Query 047920
Match_columns 556
No_of_seqs 145 out of 1086
Neff 6.9
Searched_HMMs 13730
Date Mon Mar 25 07:30:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047920.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/047920hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1m7ja2 b.92.1.6 (A:420-480) N 27.9 5.8 0.00042 28.2 -0.0 35 521-555 7-41 (61)
2 d1jmxb_ b.69.2.2 (B:) Quinohem 22.0 65 0.0047 27.8 6.3 62 470-542 272-333 (346)
3 d1pbyb_ b.69.2.2 (B:) Quinohem 21.2 82 0.006 26.9 6.8 64 470-544 260-323 (337)
4 d1pbyb_ b.69.2.2 (B:) Quinohem 18.4 2.3E+02 0.017 23.6 9.4 71 455-541 2-75 (337)
5 d1l0qa2 b.69.2.3 (A:1-301) Sur 17.2 1.8E+02 0.013 24.0 8.3 71 456-541 3-73 (301)
6 d1qksa2 b.70.2.1 (A:136-567) C 13.8 2.2E+02 0.016 26.2 8.5 76 454-541 73-150 (432)
7 d1qksa2 b.70.2.1 (A:136-567) C 13.2 66 0.0048 30.4 4.1 34 508-541 378-413 (432)
8 d1k91a_ b.104.1.1 (A:) Calreti 10.8 53 0.0038 20.7 1.5 12 493-504 1-12 (37)
9 d1l0qa2 b.69.2.3 (A:1-301) Sur 10.8 2.5E+02 0.018 23.0 7.1 68 470-548 224-291 (301)
10 d2madh_ b.69.2.1 (H:) Methylam 10.0 3.6E+02 0.026 23.1 8.2 70 469-547 297-366 (373)
No 1
>d1m7ja2 b.92.1.6 (A:420-480) N-acyl-D-aminoacid amidohydrolase {Alcaligenes faecalis [TaxId: 511]}
Probab=27.94 E-value=5.8 Score=28.15 Aligned_cols=35 Identities=20% Similarity=0.273 Sum_probs=29.7
Q ss_pred ceEEEEEecCCccccEEEEcCCCCCCCCCcccccC
Q 047920 521 EGFALLLDGSTFEEIARAKFPYGLPYGLHGCWVPK 555 (556)
Q Consensus 521 ~s~L~VLDA~~l~eVAr~~LP~~vP~GfHG~w~~~ 555 (556)
..+|+|||..++.+-|...-|...+-|++..|+.+
T Consensus 7 ~ADlvvfDp~~i~d~~~~~~~~~~~~Gi~~v~VnG 41 (61)
T d1m7ja2 7 YADLVVFDPATVADSATFEHPTERAAGIHSVYVNG 41 (61)
T ss_dssp BCCEEEECTTTCBCCCCSSSTTCCCBSEEEEEETT
T ss_pred CCCEEEECHHHccCcccccccccccceeEEEEECC
Confidence 46899999999988777788888899988888764
No 2
>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}
Probab=21.95 E-value=65 Score=27.76 Aligned_cols=62 Identities=18% Similarity=0.063 Sum_probs=39.0
Q ss_pred CceEEEecCCCceEEEcCCCCcCCccEEeeCCCCCCCCCeEEEEEEEcCCCceEEEEEecCCccccEEEEcCC
Q 047920 470 NTLTKLDLVGKKAKNWYEEGAVPSEPFFVARPGATEEDDGVVISIVSERNGEGFALLLDGSTFEEIARAKFPY 542 (556)
Q Consensus 470 ~~lvK~Dl~tg~~~~w~~~~~~~~EPvFVPrpg~~~EDDG~Lls~V~d~~~~s~L~VLDA~~l~eVAr~~LP~ 542 (556)
+.|..+|+.+++...-...+..+.--.|-| |.-+|.+- .. .+.+.|+|+++++.|+++++|.
T Consensus 272 ~~v~v~d~~~~~~~~~~~~~~~~~~va~s~-------DG~~l~v~--~~--d~~v~v~D~~t~~~i~~i~~p~ 333 (346)
T d1jmxb_ 272 NRLAKYDLKQRKLIKAANLDHTYYCVAFDK-------KGDKLYLG--GT--FNDLAVFNPDTLEKVKNIKLPG 333 (346)
T ss_dssp SEEEEEETTTTEEEEEEECSSCCCEEEECS-------SSSCEEEE--SB--SSEEEEEETTTTEEEEEEECSS
T ss_pred CeEEEEECCCCcEEEEEcCCCCEEEEEEcC-------CCCEEEEE--eC--CCcEEEEECccCCEEEEEECCC
Confidence 567888999887554333232233333432 33344322 22 2479999999999999999984
No 3
>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}
Probab=21.21 E-value=82 Score=26.88 Aligned_cols=64 Identities=17% Similarity=0.080 Sum_probs=38.7
Q ss_pred CceEEEecCCCceEEEcCCCCcCCccEEeeCCCCCCCCCeEEEEEEEcCCCceEEEEEecCCccccEEEEcCCCC
Q 047920 470 NTLTKLDLVGKKAKNWYEEGAVPSEPFFVARPGATEEDDGVVISIVSERNGEGFALLLDGSTFEEIARAKFPYGL 544 (556)
Q Consensus 470 ~~lvK~Dl~tg~~~~w~~~~~~~~EPvFVPrpg~~~EDDG~Lls~V~d~~~~s~L~VLDA~~l~eVAr~~LP~~v 544 (556)
+.|..+|+++++...-...+..+.-..|- .|.-+|.+ ... .+.+.|+|++++++|+++.+|..=
T Consensus 260 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~s-------~dG~~l~v--~~~--~~~i~v~D~~t~~~v~~i~~~g~~ 323 (337)
T d1pbyb_ 260 NVLESFDLEKNASIKRVPLPHSYYSVNVS-------TDGSTVWL--GGA--LGDLAAYDAETLEKKGQVDLPGNA 323 (337)
T ss_dssp SEEEEEETTTTEEEEEEECSSCCCEEEEC-------TTSCEEEE--ESB--SSEEEEEETTTCCEEEEEECGGGC
T ss_pred ccEEEEECCCCcEEEEEcCCCCEEEEEEC-------CCCCEEEE--EeC--CCcEEEEECCCCcEEEEEECCCCC
Confidence 46788899998765443222211112222 23334432 222 245999999999999999998543
No 4
>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}
Probab=18.37 E-value=2.3e+02 Score=23.62 Aligned_cols=71 Identities=15% Similarity=0.191 Sum_probs=45.1
Q ss_pred cEEEEecccCCCCCCCceEEEecCCCceEE-Ec--CCCCcCCccEEeeCCCCCCCCCeEEEEEEEcCCCceEEEEEecCC
Q 047920 455 RYAYACGAKRPCNFPNTLTKLDLVGKKAKN-WY--EEGAVPSEPFFVARPGATEEDDGVVISIVSERNGEGFALLLDGST 531 (556)
Q Consensus 455 ry~Y~~~~~~~~~~~~~lvK~Dl~tg~~~~-w~--~~~~~~~EPvFVPrpg~~~EDDG~Lls~V~d~~~~s~L~VLDA~~ 531 (556)
+|.+.++.+ +.|.-+|+++++... .. ..+..+....|-| |.-+|++. .. ....|.|+|..+
T Consensus 2 ~~~vt~~~d------~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~sp-------Dg~~l~v~--~~-~~~~v~v~D~~t 65 (337)
T d1pbyb_ 2 DYILAPARP------DKLVVIDTEKMAVDKVITIADAGPTPMVPMVAP-------GGRIAYAT--VN-KSESLVKIDLVT 65 (337)
T ss_dssp EEEEEEETT------TEEEEEETTTTEEEEEEECTTCTTCCCCEEECT-------TSSEEEEE--ET-TTTEEEEEETTT
T ss_pred eEEEEEcCC------CEEEEEECCCCeEEEEEECCCCCCCccEEEECC-------CCCEEEEE--EC-CCCeEEEEECCC
Confidence 355555432 789999999998644 32 2344555555544 22355432 21 235799999999
Q ss_pred ccccEEEEcC
Q 047920 532 FEEIARAKFP 541 (556)
Q Consensus 532 l~eVAr~~LP 541 (556)
.+.+.++.++
T Consensus 66 ~~~~~~~~~~ 75 (337)
T d1pbyb_ 66 GETLGRIDLS 75 (337)
T ss_dssp CCEEEEEECC
T ss_pred CcEEEEEecC
Confidence 8889988876
No 5
>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}
Probab=17.22 E-value=1.8e+02 Score=23.95 Aligned_cols=71 Identities=18% Similarity=0.229 Sum_probs=42.3
Q ss_pred EEEEecccCCCCCCCceEEEecCCCceEEEcCCCCcCCccEEeeCCCCCCCCCeEEEEEEEcCCCceEEEEEecCCcccc
Q 047920 456 YAYACGAKRPCNFPNTLTKLDLVGKKAKNWYEEGAVPSEPFFVARPGATEEDDGVVISIVSERNGEGFALLLDGSTFEEI 535 (556)
Q Consensus 456 y~Y~~~~~~~~~~~~~lvK~Dl~tg~~~~w~~~~~~~~EPvFVPrpg~~~EDDG~Lls~V~d~~~~s~L~VLDA~~l~eV 535 (556)
|+|-+... -+.|..+|+++++...=..-+ ..|.=|. -..|..+|++... ....+.|+|.++.+.+
T Consensus 3 ~~yV~~~~-----~~~v~v~D~~t~~~~~~i~~g---~~p~~va----~spdG~~l~v~~~---~~~~i~v~d~~t~~~~ 67 (301)
T d1l0qa2 3 FAYIANSE-----SDNISVIDVTSNKVTATIPVG---SNPMGAV----ISPDGTKVYVANA---HSNDVSIIDTATNNVI 67 (301)
T ss_dssp EEEEEETT-----TTEEEEEETTTTEEEEEEECS---SSEEEEE----ECTTSSEEEEEEG---GGTEEEEEETTTTEEE
T ss_pred EEEEEECC-----CCEEEEEECCCCeEEEEEECC---CCceEEE----EeCCCCEEEEEEC---CCCEEEEEECCCCcee
Confidence 77765432 268999999999854322211 2332121 1234556653322 2347899999998888
Q ss_pred EEEEcC
Q 047920 536 ARAKFP 541 (556)
Q Consensus 536 Ar~~LP 541 (556)
+++...
T Consensus 68 ~~~~~~ 73 (301)
T d1l0qa2 68 ATVPAG 73 (301)
T ss_dssp EEEECS
T ss_pred eeeecc
Confidence 887764
No 6
>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}
Probab=13.77 E-value=2.2e+02 Score=26.23 Aligned_cols=76 Identities=17% Similarity=0.108 Sum_probs=45.0
Q ss_pred ccEEEEecccCCCCCCCceEEEecCCCceEEEc--CCCCcCCccEEeeCCCCCCCCCeEEEEEEEcCCCceEEEEEecCC
Q 047920 454 YRYAYACGAKRPCNFPNTLTKLDLVGKKAKNWY--EEGAVPSEPFFVARPGATEEDDGVVISIVSERNGEGFALLLDGST 531 (556)
Q Consensus 454 yry~Y~~~~~~~~~~~~~lvK~Dl~tg~~~~w~--~~~~~~~EPvFVPrpg~~~EDDG~Lls~V~d~~~~s~L~VLDA~~ 531 (556)
-||.|.++.+ +.|..+|+.+++.+.-. ..+..+...++-|. -..|.-+|++...+ ...+.|+|+.+
T Consensus 73 G~~l~~~s~d------g~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~---~SpDG~~l~vs~~~---~~~v~i~d~~t 140 (432)
T d1qksa2 73 GRYLFVIGRD------GKVNMIDLWMKEPTTVAEIKIGSEARSIETSKM---EGWEDKYAIAGAYW---PPQYVIMDGET 140 (432)
T ss_dssp SCEEEEEETT------SEEEEEETTSSSCCEEEEEECCSEEEEEEECCS---TTCTTTEEEEEEEE---TTEEEEEETTT
T ss_pred CCEEEEEcCC------CCEEEEEeeCCCceEEEEEecCCCCCCeEEecc---cCCCCCEEEEEcCC---CCeEEEEeCcc
Confidence 3788876533 57888999988754332 22222222333332 12344477665443 34688999998
Q ss_pred ccccEEEEcC
Q 047920 532 FEEIARAKFP 541 (556)
Q Consensus 532 l~eVAr~~LP 541 (556)
.+.++.+...
T Consensus 141 ~~~~~~~~~~ 150 (432)
T d1qksa2 141 LEPKKIQSTR 150 (432)
T ss_dssp CCEEEEEECC
T ss_pred ccceeeeccC
Confidence 8877777654
No 7
>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}
Probab=13.18 E-value=66 Score=30.37 Aligned_cols=34 Identities=26% Similarity=0.197 Sum_probs=24.9
Q ss_pred Ce-EEEEEEEc-CCCceEEEEEecCCccccEEEEcC
Q 047920 508 DG-VVISIVSE-RNGEGFALLLDGSTFEEIARAKFP 541 (556)
Q Consensus 508 DG-~Lls~V~d-~~~~s~L~VLDA~~l~eVAr~~LP 541 (556)
|| +|++.++. .+..+.++|+|++++++++++.-|
T Consensus 378 DG~~v~~S~~~~~~~~g~i~i~D~~T~k~~~~i~~~ 413 (432)
T d1qksa2 378 DGTEVWFSVWNGKDQESALVVVDDKTLELKHVIKDE 413 (432)
T ss_dssp TSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECCT
T ss_pred CCCEEEEEEecCCCCCCcEEEEECCCceEEeEecCC
Confidence 44 55444444 455688999999999999988775
No 8
>d1k91a_ b.104.1.1 (A:) Calreticulin {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=10.85 E-value=53 Score=20.75 Aligned_cols=12 Identities=25% Similarity=0.515 Sum_probs=10.3
Q ss_pred CccEEeeCCCCC
Q 047920 493 SEPFFVARPGAT 504 (556)
Q Consensus 493 ~EPvFVPrpg~~ 504 (556)
+||-|||.|.+.
T Consensus 1 ~eP~~IpDp~A~ 12 (37)
T d1k91a_ 1 GKPEHIPDPDAK 12 (37)
T ss_dssp CCCSEEECSSCC
T ss_pred CCccccCCCCCC
Confidence 699999999874
No 9
>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}
Probab=10.80 E-value=2.5e+02 Score=23.03 Aligned_cols=68 Identities=22% Similarity=0.147 Sum_probs=41.0
Q ss_pred CceEEEecCCCceEEEcCCCCcCCccEEeeCCCCCCCCCeEEEEEEEcCCCceEEEEEecCCccccEEEEcCCCCCCCC
Q 047920 470 NTLTKLDLVGKKAKNWYEEGAVPSEPFFVARPGATEEDDGVVISIVSERNGEGFALLLDGSTFEEIARAKFPYGLPYGL 548 (556)
Q Consensus 470 ~~lvK~Dl~tg~~~~w~~~~~~~~EPvFVPrpg~~~EDDG~Lls~V~d~~~~s~L~VLDA~~l~eVAr~~LP~~vP~Gf 548 (556)
+.|..+|+.+++...-...+ .+|.-|.= ..|.-+|++... ....+.|+|.++.+.++++.+-. -|++.
T Consensus 224 ~~v~v~D~~t~~~~~~~~~~---~~~~~va~----spdg~~l~va~~---~~~~i~v~D~~t~~~~~~~~vg~-~P~~~ 291 (301)
T d1l0qa2 224 NTVSMIDTGTNKITARIPVG---PDPAGIAV----TPDGKKVYVALS---FCNTVSVIDTATNTITATMAVGK-NPYAS 291 (301)
T ss_dssp CEEEEEETTTTEEEEEEECC---SSEEEEEE----CTTSSEEEEEET---TTTEEEEEETTTTEEEEEEECSS-SEECC
T ss_pred eeeeeeecCCCeEEEEEcCC---CCEEEEEE----eCCCCEEEEEEC---CCCeEEEEECCCCeEEEEEeCCC-CCcEe
Confidence 57888999998754322222 23332221 224446654332 23479999999998899887643 36665
No 10
>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}
Probab=10.04 E-value=3.6e+02 Score=23.08 Aligned_cols=70 Identities=11% Similarity=-0.005 Sum_probs=42.4
Q ss_pred CCceEEEecCCCceEEEcCCCCcCCccEEeeCCCCCCCCCeEEEEEEEcCCCceEEEEEecCCccccEEEEcCCCCCCC
Q 047920 469 PNTLTKLDLVGKKAKNWYEEGAVPSEPFFVARPGATEEDDGVVISIVSERNGEGFALLLDGSTFEEIARAKFPYGLPYG 547 (556)
Q Consensus 469 ~~~lvK~Dl~tg~~~~w~~~~~~~~EPvFVPrpg~~~EDDG~Lls~V~d~~~~s~L~VLDA~~l~eVAr~~LP~~vP~G 547 (556)
.+.+..+|+.+++...-...+..+....|-| |.-.+|.+... ....+.|+|.++-+++.++..+.+-|.+
T Consensus 297 ~~~v~~~d~~t~~~~~~~~~~~~~~~~a~sp-------DG~~~l~vt~~--~d~~v~v~D~~tg~~~~~~~~~g~~P~~ 366 (373)
T d2madh_ 297 AKEVTSVTGLVGQTSSQISLGHDVDAISVAQ-------DGGPDLYALSA--GTEVLHIYDAGAGDQDQSTVELGSGPQV 366 (373)
T ss_pred CCeEEEEECCCCcEEEEecCCCCeeEEEECC-------CCCEEEEEEeC--CCCeEEEEECCCCCEEEEECCCCCCCcE
Confidence 4678889999987654333333333334432 22244433222 2357999999999999998866555543
Done!