Query 047923
Match_columns 190
No_of_seqs 179 out of 1795
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 04:38:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047923.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047923hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 100.0 3E-55 6.6E-60 408.1 15.4 186 2-190 38-227 (1153)
2 PLN03194 putative disease resi 100.0 1E-39 2.3E-44 242.7 10.7 122 2-140 52-180 (187)
3 PF01582 TIR: TIR domain; Int 99.8 3.8E-22 8.2E-27 145.4 1.4 108 3-110 27-140 (141)
4 smart00255 TIR Toll - interleu 99.7 2.6E-16 5.7E-21 114.0 10.1 110 2-113 28-138 (140)
5 PF13676 TIR_2: TIR domain; PD 99.2 3E-12 6.6E-17 87.9 0.2 70 2-77 22-91 (102)
6 KOG4658 Apoptotic ATPase [Sign 98.6 2.8E-08 6.1E-13 91.2 3.2 39 150-190 161-199 (889)
7 PTZ00202 tuzin; Provisional 97.8 5.1E-05 1.1E-09 64.6 5.5 46 144-189 259-305 (550)
8 PF05496 RuvB_N: Holliday junc 97.6 7.6E-05 1.7E-09 58.1 4.1 45 145-189 22-69 (233)
9 PRK00080 ruvB Holliday junctio 97.5 9E-05 2E-09 61.2 3.0 46 145-190 23-71 (328)
10 PRK00411 cdc6 cell division co 97.4 0.00011 2.3E-09 62.0 3.1 47 144-190 27-75 (394)
11 smart00763 AAA_PrkA PrkA AAA d 97.3 0.00016 3.5E-09 60.1 3.1 43 148-190 52-98 (361)
12 COG2256 MGS1 ATPase related to 97.1 0.00015 3.3E-09 60.7 0.6 42 147-190 24-68 (436)
13 KOG2028 ATPase related to the 97.0 0.00024 5.2E-09 59.0 1.1 42 147-190 138-182 (554)
14 cd01858 NGP_1 NGP-1. Autoanti 97.0 0.014 3.1E-07 42.7 10.1 50 23-74 2-51 (157)
15 PRK15455 PrkA family serine pr 96.8 0.0011 2.5E-08 58.3 3.3 44 147-190 76-123 (644)
16 PRK10416 signal recognition pa 96.8 0.0063 1.4E-07 50.2 7.5 21 169-189 113-133 (318)
17 TIGR00064 ftsY signal recognit 96.7 0.0048 1E-07 49.7 6.5 20 169-188 71-90 (272)
18 TIGR02903 spore_lon_C ATP-depe 96.7 0.0016 3.4E-08 58.3 4.0 43 145-189 152-194 (615)
19 TIGR01242 26Sp45 26S proteasom 96.7 0.0011 2.4E-08 55.6 2.9 45 146-190 121-176 (364)
20 PRK00771 signal recognition pa 96.7 0.009 2E-07 51.3 8.4 20 170-189 95-114 (437)
21 TIGR00554 panK_bact pantothena 96.7 0.0047 1E-07 50.2 6.3 21 169-189 61-81 (290)
22 COG0466 Lon ATP-dependent Lon 96.7 0.0041 8.9E-08 55.7 6.1 44 147-190 323-370 (782)
23 KOG3678 SARM protein (with ste 96.7 0.0036 7.8E-08 53.6 5.4 64 3-71 638-710 (832)
24 PRK05439 pantothenate kinase; 96.6 0.0066 1.4E-07 49.8 6.6 21 169-189 85-105 (311)
25 PRK11331 5-methylcytosine-spec 96.6 0.0022 4.7E-08 55.1 3.5 40 147-190 175-214 (459)
26 CHL00095 clpC Clp protease ATP 96.6 0.0028 6.1E-08 58.6 4.5 41 147-189 179-219 (821)
27 TIGR02639 ClpA ATP-dependent C 96.6 0.0027 5.9E-08 58.0 4.4 42 147-190 182-223 (731)
28 PRK10787 DNA-binding ATP-depen 96.5 0.0093 2E-07 54.9 7.7 44 147-190 322-369 (784)
29 PRK13341 recombination factor 96.5 0.0019 4.1E-08 58.8 3.0 43 146-190 27-72 (725)
30 TIGR03345 VI_ClpV1 type VI sec 96.5 0.0032 7E-08 58.4 4.4 41 147-189 187-227 (852)
31 COG2255 RuvB Holliday junction 96.5 0.0025 5.3E-08 51.4 3.0 45 145-189 24-71 (332)
32 PRK10865 protein disaggregatio 96.5 0.0044 9.4E-08 57.6 5.0 41 147-189 178-218 (857)
33 TIGR03015 pepcterm_ATPase puta 96.4 0.0026 5.6E-08 50.6 3.0 20 170-189 43-62 (269)
34 PTZ00112 origin recognition co 96.4 0.0037 8E-08 57.7 4.1 47 144-190 752-801 (1164)
35 PRK03992 proteasome-activating 96.4 0.0024 5.3E-08 54.0 2.8 44 147-190 131-185 (389)
36 PHA02544 44 clamp loader, smal 96.4 0.0018 3.9E-08 52.9 1.9 46 144-190 18-63 (316)
37 TIGR00763 lon ATP-dependent pr 96.3 0.016 3.5E-07 53.4 7.6 44 147-190 320-367 (775)
38 PRK08903 DnaA regulatory inact 96.3 0.0044 9.5E-08 48.3 3.4 21 170-190 42-62 (227)
39 PLN02318 phosphoribulokinase/u 96.2 0.0045 9.6E-08 54.9 3.6 31 160-190 55-85 (656)
40 PRK09435 membrane ATPase/prote 96.2 0.0082 1.8E-07 49.7 5.0 33 157-189 43-75 (332)
41 PRK11889 flhF flagellar biosyn 96.2 0.017 3.8E-07 49.0 6.6 20 170-189 241-260 (436)
42 cd01857 HSR1_MMR1 HSR1/MMR1. 96.2 0.072 1.6E-06 38.2 9.2 52 20-73 2-53 (141)
43 PRK14974 cell division protein 96.1 0.02 4.4E-07 47.5 6.9 19 170-188 140-158 (336)
44 TIGR01425 SRP54_euk signal rec 96.1 0.03 6.4E-07 48.0 8.0 20 170-189 100-119 (429)
45 TIGR03346 chaperone_ClpB ATP-d 96.1 0.008 1.7E-07 55.9 4.9 41 147-189 173-213 (852)
46 CHL00181 cbbX CbbX; Provisiona 96.1 0.0065 1.4E-07 49.3 3.6 19 172-190 61-79 (287)
47 PRK14956 DNA polymerase III su 96.0 0.0063 1.4E-07 52.7 3.4 46 144-190 15-60 (484)
48 TIGR02880 cbbX_cfxQ probable R 95.8 0.0087 1.9E-07 48.5 3.2 18 172-189 60-77 (284)
49 TIGR00602 rad24 checkpoint pro 95.7 0.0091 2E-07 53.6 3.4 47 144-190 81-130 (637)
50 PTZ00361 26 proteosome regulat 95.7 0.01 2.2E-07 51.0 3.2 44 147-190 183-237 (438)
51 PRK05703 flhF flagellar biosyn 95.6 0.026 5.6E-07 48.4 5.6 20 170-189 221-240 (424)
52 TIGR02881 spore_V_K stage V sp 95.6 0.0059 1.3E-07 48.7 1.5 22 169-190 41-62 (261)
53 PRK08099 bifunctional DNA-bind 95.6 0.0061 1.3E-07 51.8 1.6 23 168-190 217-239 (399)
54 PLN02200 adenylate kinase fami 95.6 0.0076 1.7E-07 47.5 2.0 20 170-189 43-62 (234)
55 PRK12724 flagellar biosynthesi 95.6 0.054 1.2E-06 46.3 7.1 20 170-189 223-242 (432)
56 PLN02348 phosphoribulokinase 95.5 0.014 2.9E-07 49.4 3.4 24 167-190 46-69 (395)
57 PRK11034 clpA ATP-dependent Cl 95.5 0.014 3.1E-07 53.4 3.8 41 147-189 186-226 (758)
58 PF08937 DUF1863: MTH538 TIR-l 95.5 0.026 5.5E-07 40.2 4.3 50 15-68 56-105 (130)
59 PLN02796 D-glycerate 3-kinase 95.5 0.0079 1.7E-07 50.0 1.8 22 169-190 99-120 (347)
60 KOG2004 Mitochondrial ATP-depe 95.4 0.012 2.7E-07 52.9 3.0 44 147-190 411-458 (906)
61 PTZ00454 26S protease regulato 95.4 0.015 3.3E-07 49.4 3.3 44 147-190 145-199 (398)
62 PRK09111 DNA polymerase III su 95.4 0.015 3.2E-07 51.9 3.3 46 144-190 21-66 (598)
63 PRK09376 rho transcription ter 95.4 0.0072 1.6E-07 51.1 1.3 20 171-190 170-189 (416)
64 PRK06620 hypothetical protein; 95.4 0.0087 1.9E-07 46.5 1.6 19 171-189 45-63 (214)
65 TIGR00959 ffh signal recogniti 95.3 0.072 1.6E-06 45.7 7.1 19 170-188 99-117 (428)
66 PRK06645 DNA polymerase III su 95.3 0.016 3.5E-07 50.7 3.3 46 144-190 18-63 (507)
67 PRK09087 hypothetical protein; 95.3 0.019 4.1E-07 45.0 3.3 20 170-189 44-63 (226)
68 TIGR01243 CDC48 AAA family ATP 95.3 0.015 3.2E-07 53.2 3.1 45 146-190 177-232 (733)
69 PRK10865 protein disaggregatio 95.2 0.023 5E-07 52.9 4.3 45 146-190 567-618 (857)
70 PRK05537 bifunctional sulfate 95.2 0.027 5.9E-07 50.0 4.5 43 148-190 370-412 (568)
71 TIGR03499 FlhF flagellar biosy 95.2 0.011 2.4E-07 47.9 1.9 20 170-189 194-213 (282)
72 PRK10463 hydrogenase nickel in 95.1 0.026 5.6E-07 45.9 3.7 21 169-189 103-123 (290)
73 CHL00176 ftsH cell division pr 95.1 0.014 3E-07 52.5 2.3 45 146-190 182-236 (638)
74 PRK08154 anaerobic benzoate ca 95.1 0.021 4.6E-07 46.8 3.2 22 169-190 132-153 (309)
75 TIGR01241 FtsH_fam ATP-depende 95.0 0.017 3.7E-07 50.4 2.8 45 146-190 54-108 (495)
76 PLN03046 D-glycerate 3-kinase; 94.9 0.014 3E-07 49.8 1.8 21 170-190 212-232 (460)
77 COG1703 ArgK Putative periplas 94.9 0.03 6.4E-07 45.5 3.4 32 157-188 38-69 (323)
78 PRK09183 transposase/IS protei 94.9 0.014 3.1E-07 46.6 1.7 20 171-190 103-122 (259)
79 PF08298 AAA_PrkA: PrkA AAA do 94.8 0.035 7.5E-07 46.2 3.8 43 147-189 61-107 (358)
80 TIGR02902 spore_lonB ATP-depen 94.8 0.028 6.1E-07 49.6 3.5 43 146-190 64-106 (531)
81 TIGR03689 pup_AAA proteasome A 94.8 0.024 5.2E-07 49.7 3.0 44 147-190 182-236 (512)
82 PRK08084 DNA replication initi 94.8 0.015 3.3E-07 45.8 1.6 20 170-189 45-64 (235)
83 COG1123 ATPase components of v 94.8 0.016 3.5E-07 50.7 1.8 20 171-190 318-337 (539)
84 PRK10867 signal recognition pa 94.7 0.19 4.1E-06 43.3 8.2 19 170-188 100-118 (433)
85 COG1474 CDC6 Cdc6-related prot 94.7 0.036 7.9E-07 46.6 3.8 47 144-190 14-62 (366)
86 TIGR02639 ClpA ATP-dependent C 94.6 0.06 1.3E-06 49.3 5.2 44 147-190 454-504 (731)
87 PF05673 DUF815: Protein of un 94.6 0.027 5.8E-07 44.6 2.6 47 144-190 24-72 (249)
88 cd03267 ABC_NatA_like Similar 94.6 0.02 4.4E-07 44.9 1.8 21 170-190 47-67 (236)
89 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 94.6 0.022 4.8E-07 44.4 2.0 21 170-190 48-68 (224)
90 PRK06526 transposase; Provisio 94.5 0.018 3.9E-07 46.0 1.4 20 171-190 99-118 (254)
91 PRK14238 phosphate transporter 94.5 0.021 4.6E-07 45.8 1.8 21 170-190 50-70 (271)
92 PLN02165 adenylate isopentenyl 94.5 0.021 4.5E-07 47.3 1.8 20 170-189 43-62 (334)
93 PLN00020 ribulose bisphosphate 94.5 0.021 4.5E-07 48.0 1.8 21 170-190 148-168 (413)
94 PRK14248 phosphate ABC transpo 94.5 0.022 4.7E-07 45.6 1.8 21 170-190 47-67 (268)
95 PRK05342 clpX ATP-dependent pr 94.4 0.04 8.7E-07 47.1 3.4 20 171-190 109-128 (412)
96 PRK12723 flagellar biosynthesi 94.4 0.074 1.6E-06 45.1 4.9 20 170-189 174-193 (388)
97 PRK08727 hypothetical protein; 94.4 0.053 1.2E-06 42.6 3.8 20 171-190 42-61 (233)
98 PRK12289 GTPase RsgA; Reviewed 94.3 0.28 6E-06 41.1 8.0 30 26-55 86-116 (352)
99 cd03294 ABC_Pro_Gly_Bertaine T 94.2 0.026 5.7E-07 45.2 1.8 21 170-190 50-70 (269)
100 KOG0744 AAA+-type ATPase [Post 94.2 0.026 5.6E-07 46.5 1.7 20 171-190 178-197 (423)
101 PRK12377 putative replication 94.2 0.037 8E-07 44.0 2.6 21 170-190 101-121 (248)
102 KOG0991 Replication factor C, 94.2 0.03 6.5E-07 44.2 1.9 43 144-188 24-66 (333)
103 PRK09473 oppD oligopeptide tra 94.1 0.026 5.5E-07 46.8 1.6 21 170-190 42-62 (330)
104 PRK11308 dppF dipeptide transp 94.1 0.028 6E-07 46.5 1.8 20 171-190 42-61 (327)
105 COG1245 Predicted ATPase, RNas 94.1 0.027 6E-07 48.4 1.8 20 170-189 367-386 (591)
106 PRK13546 teichoic acids export 94.1 0.031 6.6E-07 44.8 2.0 21 170-190 50-70 (264)
107 PRK07952 DNA replication prote 94.1 0.05 1.1E-06 43.2 3.2 21 170-190 99-119 (244)
108 cd01878 HflX HflX subfamily. 94.1 0.029 6.2E-07 42.7 1.7 22 168-189 39-60 (204)
109 cd01856 YlqF YlqF. Proteins o 94.1 0.66 1.4E-05 34.4 9.1 28 18-45 8-35 (171)
110 PRK14265 phosphate ABC transpo 94.1 0.032 6.9E-07 44.9 2.0 21 170-190 46-66 (274)
111 PRK09112 DNA polymerase III su 94.1 0.059 1.3E-06 45.1 3.6 45 144-189 20-64 (351)
112 PRK14235 phosphate transporter 94.0 0.031 6.6E-07 44.8 1.8 21 170-190 45-65 (267)
113 PRK14236 phosphate transporter 94.0 0.031 6.7E-07 44.9 1.8 21 170-190 51-71 (272)
114 PRK10536 hypothetical protein; 94.0 0.074 1.6E-06 42.5 3.9 39 147-189 55-93 (262)
115 PRK14722 flhF flagellar biosyn 94.0 0.029 6.3E-07 47.3 1.7 20 170-189 137-156 (374)
116 PRK12726 flagellar biosynthesi 94.0 0.1 2.2E-06 44.2 4.8 21 169-189 205-225 (407)
117 PRK14489 putative bifunctional 94.0 0.048 1E-06 45.8 3.0 21 169-189 204-224 (366)
118 cd03248 ABCC_TAP TAP, the Tran 94.0 0.032 7E-07 43.3 1.8 22 169-190 39-60 (226)
119 COG0714 MoxR-like ATPases [Gen 93.9 0.061 1.3E-06 44.4 3.5 41 146-190 23-63 (329)
120 PRK14271 phosphate ABC transpo 93.9 0.033 7.2E-07 44.9 1.8 21 170-190 47-67 (276)
121 PRK14237 phosphate transporter 93.9 0.034 7.4E-07 44.5 1.8 21 170-190 46-66 (267)
122 TIGR02928 orc1/cdc6 family rep 93.9 0.03 6.5E-07 46.6 1.5 20 171-190 41-60 (365)
123 PF06309 Torsin: Torsin; Inte 93.8 0.09 1.9E-06 37.4 3.7 43 147-189 25-72 (127)
124 TIGR03346 chaperone_ClpB ATP-d 93.8 0.098 2.1E-06 48.8 4.9 45 146-190 564-615 (852)
125 PRK15079 oligopeptide ABC tran 93.7 0.036 7.8E-07 45.9 1.8 21 170-190 47-67 (331)
126 cd03291 ABCC_CFTR1 The CFTR su 93.7 0.038 8.3E-07 44.7 1.8 21 170-190 63-83 (282)
127 PRK14275 phosphate ABC transpo 93.7 0.041 8.9E-07 44.5 2.0 20 171-190 66-85 (286)
128 PRK07471 DNA polymerase III su 93.7 0.063 1.4E-06 45.2 3.1 45 144-189 16-60 (365)
129 PRK07133 DNA polymerase III su 93.7 0.069 1.5E-06 48.6 3.5 46 144-190 15-60 (725)
130 TIGR01526 nadR_NMN_Atrans nico 93.6 0.038 8.2E-07 45.7 1.7 20 170-189 162-181 (325)
131 PF13245 AAA_19: Part of AAA d 93.6 0.039 8.5E-07 35.6 1.5 17 171-187 11-27 (76)
132 PRK14252 phosphate ABC transpo 93.6 0.04 8.7E-07 44.0 1.8 22 169-190 41-62 (265)
133 PRK11034 clpA ATP-dependent Cl 93.6 0.12 2.5E-06 47.6 5.0 44 147-190 458-508 (758)
134 KOG1969 DNA replication checkp 93.6 0.034 7.3E-07 50.2 1.4 20 170-189 326-345 (877)
135 TIGR03600 phage_DnaB phage rep 93.6 0.38 8.3E-06 41.1 7.8 40 149-189 174-213 (421)
136 PRK04220 2-phosphoglycerate ki 93.6 0.041 8.8E-07 45.0 1.8 20 171-190 93-112 (301)
137 PRK06995 flhF flagellar biosyn 93.6 0.039 8.4E-07 48.0 1.7 20 170-189 256-275 (484)
138 TIGR03156 GTP_HflX GTP-binding 93.6 0.16 3.5E-06 42.5 5.3 21 169-189 188-208 (351)
139 TIGR01243 CDC48 AAA family ATP 93.4 0.076 1.6E-06 48.7 3.5 44 147-190 453-507 (733)
140 PRK12727 flagellar biosynthesi 93.4 0.042 9E-07 48.3 1.6 20 170-189 350-369 (559)
141 PRK14721 flhF flagellar biosyn 93.3 0.046 9.9E-07 46.8 1.8 20 170-189 191-210 (420)
142 TIGR02782 TrbB_P P-type conjug 93.3 0.053 1.2E-06 44.3 2.1 19 172-190 134-152 (299)
143 TIGR01817 nifA Nif-specific re 93.3 0.064 1.4E-06 47.3 2.7 45 145-190 194-239 (534)
144 cd01854 YjeQ_engC YjeQ/EngC. 93.3 0.074 1.6E-06 43.2 2.8 19 171-189 162-180 (287)
145 PRK05642 DNA replication initi 93.2 0.047 1E-06 42.9 1.6 19 171-189 46-64 (234)
146 PRK14264 phosphate ABC transpo 93.2 0.051 1.1E-06 44.4 1.8 21 170-190 71-91 (305)
147 PRK14254 phosphate ABC transpo 93.2 0.051 1.1E-06 44.0 1.8 21 170-190 65-85 (285)
148 TIGR02788 VirB11 P-type DNA tr 93.2 0.067 1.5E-06 43.9 2.5 20 170-189 144-163 (308)
149 PRK13631 cbiO cobalt transport 93.2 0.052 1.1E-06 44.8 1.8 21 170-190 52-72 (320)
150 KOG0062 ATPase component of AB 93.2 0.036 7.9E-07 48.1 0.9 20 171-190 107-126 (582)
151 cd01855 YqeH YqeH. YqeH is an 93.1 0.076 1.6E-06 40.1 2.5 30 17-46 22-51 (190)
152 PF03193 DUF258: Protein of un 93.1 0.11 2.3E-06 38.7 3.2 31 154-189 24-54 (161)
153 COG1072 CoaA Panthothenate kin 93.1 0.09 2E-06 42.3 3.0 34 156-189 67-101 (283)
154 PF01695 IstB_IS21: IstB-like 93.1 0.047 1E-06 41.1 1.4 20 171-190 48-67 (178)
155 TIGR00382 clpX endopeptidase C 93.1 0.067 1.5E-06 45.7 2.4 20 171-190 117-136 (413)
156 PRK13409 putative ATPase RIL; 93.0 0.056 1.2E-06 48.3 2.0 21 170-190 99-119 (590)
157 PF06068 TIP49: TIP49 C-termin 93.0 0.095 2.1E-06 44.0 3.1 46 144-189 21-69 (398)
158 PF00437 T2SE: Type II/IV secr 93.0 0.065 1.4E-06 42.8 2.1 37 153-189 110-146 (270)
159 CHL00095 clpC Clp protease ATP 92.9 0.18 3.8E-06 47.0 5.1 44 147-190 509-559 (821)
160 cd01859 MJ1464 MJ1464. This f 92.9 0.14 3E-06 37.2 3.7 38 151-189 83-120 (156)
161 PRK10261 glutathione transport 92.9 0.055 1.2E-06 48.7 1.7 21 170-190 42-62 (623)
162 PLN02199 shikimate kinase 92.9 0.054 1.2E-06 44.1 1.5 19 171-189 103-121 (303)
163 KOG0739 AAA+-type ATPase [Post 92.8 0.56 1.2E-05 38.5 7.1 44 147-190 133-186 (439)
164 COG2274 SunT ABC-type bacterio 92.8 0.062 1.4E-06 49.0 2.0 20 171-190 500-519 (709)
165 PRK12422 chromosomal replicati 92.8 0.056 1.2E-06 46.7 1.6 20 171-190 142-161 (445)
166 PRK08116 hypothetical protein; 92.8 0.058 1.3E-06 43.4 1.6 19 172-190 116-134 (268)
167 cd03288 ABCC_SUR2 The SUR doma 92.8 0.064 1.4E-06 42.6 1.8 20 171-190 48-67 (257)
168 TIGR00362 DnaA chromosomal rep 92.8 0.1 2.3E-06 44.3 3.2 21 170-190 136-156 (405)
169 PRK09700 D-allose transporter 92.8 0.067 1.4E-06 46.8 2.0 21 170-190 289-309 (510)
170 COG1224 TIP49 DNA helicase TIP 92.8 0.18 3.8E-06 42.2 4.3 46 144-189 36-84 (450)
171 PRK13409 putative ATPase RIL; 92.8 0.062 1.3E-06 48.0 1.8 20 171-190 366-385 (590)
172 KOG0738 AAA+-type ATPase [Post 92.8 0.17 3.7E-06 42.8 4.2 65 122-190 191-265 (491)
173 PRK06921 hypothetical protein; 92.8 0.059 1.3E-06 43.3 1.6 21 170-190 117-137 (266)
174 PRK13549 xylose transporter AT 92.7 0.064 1.4E-06 46.9 1.9 20 171-190 289-308 (506)
175 PRK15439 autoinducer 2 ABC tra 92.7 0.067 1.5E-06 46.9 2.0 20 171-190 290-309 (510)
176 PRK10982 galactose/methyl gala 92.7 0.067 1.4E-06 46.6 1.9 20 171-190 275-294 (491)
177 PRK06835 DNA replication prote 92.7 0.061 1.3E-06 44.6 1.6 20 171-190 184-203 (329)
178 PRK13765 ATP-dependent proteas 92.6 0.11 2.5E-06 46.7 3.3 40 147-190 31-70 (637)
179 COG1134 TagH ABC-type polysacc 92.6 0.072 1.6E-06 42.1 1.8 20 170-189 53-72 (249)
180 COG0542 clpA ATP-binding subun 92.6 0.13 2.7E-06 47.2 3.5 38 147-188 170-209 (786)
181 TIGR03345 VI_ClpV1 type VI sec 92.6 0.19 4.2E-06 46.9 4.8 45 146-190 565-616 (852)
182 PF03215 Rad17: Rad17 cell cyc 92.6 0.12 2.5E-06 45.6 3.2 43 147-189 19-64 (519)
183 TIGR02868 CydC thiol reductant 92.5 0.069 1.5E-06 46.9 1.8 20 170-189 361-380 (529)
184 PRK13536 nodulation factor exp 92.5 0.072 1.6E-06 44.3 1.8 20 170-189 67-86 (340)
185 PHA02244 ATPase-like protein 92.5 0.1 2.3E-06 43.9 2.7 18 173-190 122-139 (383)
186 PRK10261 glutathione transport 92.5 0.07 1.5E-06 48.0 1.8 20 171-190 351-370 (623)
187 PRK15134 microcin C ABC transp 92.5 0.075 1.6E-06 46.7 2.0 20 171-190 313-332 (529)
188 cd01121 Sms Sms (bacterial rad 92.5 0.12 2.6E-06 43.6 3.1 33 157-189 69-101 (372)
189 PRK00149 dnaA chromosomal repl 92.4 0.12 2.5E-06 44.7 3.1 21 170-190 148-168 (450)
190 PRK11819 putative ABC transpor 92.4 0.079 1.7E-06 47.0 2.0 20 171-190 351-370 (556)
191 PRK10762 D-ribose transporter 92.4 0.077 1.7E-06 46.4 1.9 20 171-190 279-298 (501)
192 PRK05291 trmE tRNA modificatio 92.3 0.27 5.9E-06 42.5 5.1 18 172-189 217-234 (449)
193 TIGR03719 ABC_ABC_ChvD ATP-bin 92.3 0.086 1.9E-06 46.7 2.1 20 171-190 349-368 (552)
194 PRK15064 ABC transporter ATP-b 92.2 0.083 1.8E-06 46.5 2.0 20 171-190 346-365 (530)
195 PLN03073 ABC transporter F fam 92.2 0.085 1.8E-06 48.3 2.0 21 170-190 203-223 (718)
196 TIGR02012 tigrfam_recA protein 92.2 0.19 4E-06 41.6 3.8 30 159-188 43-73 (321)
197 TIGR00416 sms DNA repair prote 92.2 0.13 2.9E-06 44.5 3.1 35 155-189 79-113 (454)
198 TIGR00767 rho transcription te 92.2 0.079 1.7E-06 45.0 1.6 20 171-190 169-188 (415)
199 PRK10070 glycine betaine trans 92.1 0.079 1.7E-06 45.1 1.6 21 170-190 54-74 (400)
200 PRK14257 phosphate ABC transpo 92.1 0.093 2E-06 43.5 2.0 20 171-190 109-128 (329)
201 PRK11288 araG L-arabinose tran 92.1 0.089 1.9E-06 46.0 2.0 20 171-190 280-299 (501)
202 PRK13477 bifunctional pantoate 92.1 0.085 1.8E-06 46.3 1.8 21 170-190 284-304 (512)
203 TIGR00450 mnmE_trmE_thdF tRNA 92.1 0.43 9.3E-06 41.2 6.1 18 172-189 205-222 (442)
204 TIGR03269 met_CoM_red_A2 methy 92.0 0.087 1.9E-06 46.2 1.8 20 171-190 311-330 (520)
205 PF13555 AAA_29: P-loop contai 92.0 0.11 2.4E-06 32.1 1.8 18 172-189 25-42 (62)
206 PRK00098 GTPase RsgA; Reviewed 92.0 0.092 2E-06 42.9 1.8 19 171-189 165-183 (298)
207 COG1222 RPT1 ATP-dependent 26S 92.0 0.083 1.8E-06 44.1 1.5 43 148-190 152-205 (406)
208 PRK09866 hypothetical protein; 92.0 0.15 3.3E-06 45.9 3.3 38 153-190 52-89 (741)
209 PRK10636 putative ABC transpor 92.0 0.093 2E-06 47.4 2.0 21 170-190 338-358 (638)
210 COG4618 ArpD ABC-type protease 92.0 0.085 1.8E-06 45.9 1.6 20 171-190 363-382 (580)
211 PRK12337 2-phosphoglycerate ki 91.9 0.098 2.1E-06 45.2 2.0 21 169-189 254-274 (475)
212 PRK08181 transposase; Validate 91.9 0.082 1.8E-06 42.6 1.4 20 171-190 107-126 (269)
213 PRK10938 putative molybdenum t 91.9 0.097 2.1E-06 45.6 2.0 20 171-190 287-306 (490)
214 TIGR02239 recomb_RAD51 DNA rep 91.9 0.13 2.8E-06 42.4 2.6 35 155-189 81-115 (316)
215 cd01849 YlqF_related_GTPase Yl 91.9 0.19 4.2E-06 36.6 3.2 20 170-189 100-119 (155)
216 TIGR02633 xylG D-xylose ABC tr 91.9 0.1 2.2E-06 45.6 2.0 21 170-190 286-306 (500)
217 PRK11147 ABC transporter ATPas 91.8 0.098 2.1E-06 47.2 2.0 20 171-190 346-365 (635)
218 TIGR03815 CpaE_hom_Actino heli 91.8 0.13 2.8E-06 42.3 2.5 20 169-188 92-112 (322)
219 PTZ00035 Rad51 protein; Provis 91.8 0.15 3.3E-06 42.4 3.0 33 157-189 105-137 (337)
220 TIGR01650 PD_CobS cobaltochela 91.8 0.085 1.8E-06 43.6 1.4 31 156-190 54-84 (327)
221 PF11868 DUF3388: Protein of u 91.8 0.15 3.3E-06 37.7 2.6 27 159-187 45-71 (192)
222 TIGR00665 DnaB replicative DNA 91.7 0.73 1.6E-05 39.5 7.1 40 149-189 175-214 (434)
223 PRK08840 replicative DNA helic 91.7 1 2.2E-05 39.2 8.0 39 149-188 197-235 (464)
224 PRK13900 type IV secretion sys 91.7 0.096 2.1E-06 43.5 1.6 20 170-189 160-179 (332)
225 TIGR02236 recomb_radA DNA repa 91.7 0.22 4.8E-06 40.7 3.8 32 158-189 83-114 (310)
226 TIGR02238 recomb_DMC1 meiotic 91.7 0.17 3.8E-06 41.6 3.1 32 157-188 83-114 (313)
227 PRK13894 conjugal transfer ATP 91.6 0.12 2.6E-06 42.7 2.1 20 171-190 149-168 (319)
228 COG4240 Predicted kinase [Gene 91.6 0.098 2.1E-06 41.2 1.4 21 169-189 49-69 (300)
229 PRK06851 hypothetical protein; 91.6 0.49 1.1E-05 39.8 5.7 21 170-190 214-234 (367)
230 KOG0651 26S proteasome regulat 91.5 0.1 2.2E-06 42.9 1.6 20 171-190 167-186 (388)
231 PRK13851 type IV secretion sys 91.5 0.12 2.5E-06 43.2 2.0 21 170-190 162-182 (344)
232 cd00983 recA RecA is a bacter 91.5 0.24 5.3E-06 41.0 3.8 31 159-189 43-74 (325)
233 PRK08760 replicative DNA helic 91.5 1 2.2E-05 39.3 7.8 39 149-188 209-247 (476)
234 TIGR00390 hslU ATP-dependent p 91.5 0.1 2.2E-06 44.7 1.5 20 171-190 48-67 (441)
235 COG4172 ABC-type uncharacteriz 91.5 0.087 1.9E-06 44.8 1.1 20 171-190 314-333 (534)
236 TIGR03596 GTPase_YlqF ribosome 91.4 0.21 4.6E-06 40.2 3.3 30 18-47 10-39 (276)
237 PRK13545 tagH teichoic acids e 91.4 0.12 2.6E-06 45.6 1.9 21 170-190 50-70 (549)
238 cd01129 PulE-GspE PulE/GspE Th 91.4 0.28 6.1E-06 39.3 4.0 36 151-189 63-99 (264)
239 PLN03073 ABC transporter F fam 91.3 0.12 2.5E-06 47.4 1.9 20 171-190 536-555 (718)
240 PRK06731 flhF flagellar biosyn 91.3 0.39 8.4E-06 38.7 4.7 20 170-189 75-94 (270)
241 PRK11176 lipid transporter ATP 91.3 0.11 2.5E-06 46.1 1.8 20 171-190 370-389 (582)
242 PRK15429 formate hydrogenlyase 91.3 0.17 3.7E-06 46.1 2.9 44 147-190 376-419 (686)
243 CHL00195 ycf46 Ycf46; Provisio 91.2 0.21 4.5E-06 43.7 3.3 44 147-190 228-279 (489)
244 PRK12288 GTPase RsgA; Reviewed 91.2 0.2 4.4E-06 41.8 3.1 30 156-190 196-225 (347)
245 TIGR03415 ABC_choXWV_ATP choli 91.2 0.12 2.6E-06 43.8 1.8 21 170-190 50-70 (382)
246 TIGR02858 spore_III_AA stage I 91.2 0.27 5.9E-06 39.6 3.7 21 169-189 110-130 (270)
247 PRK05201 hslU ATP-dependent pr 91.2 0.11 2.4E-06 44.4 1.6 20 171-190 51-70 (443)
248 PRK14088 dnaA chromosomal repl 91.2 0.11 2.4E-06 44.8 1.5 21 170-190 130-150 (440)
249 PRK05022 anaerobic nitric oxid 91.2 0.18 4E-06 44.2 3.0 46 145-190 185-230 (509)
250 cd04178 Nucleostemin_like Nucl 91.2 0.26 5.7E-06 36.9 3.4 20 170-189 117-136 (172)
251 TIGR03797 NHPM_micro_ABC2 NHPM 91.1 0.12 2.6E-06 46.9 1.8 19 171-189 480-498 (686)
252 KOG2227 Pre-initiation complex 91.1 0.48 1E-05 41.0 5.2 59 127-188 133-193 (529)
253 COG1132 MdlB ABC-type multidru 91.1 0.13 2.9E-06 45.6 2.0 19 171-189 356-374 (567)
254 KOG0989 Replication factor C, 91.0 0.2 4.4E-06 41.0 2.8 42 146-189 35-76 (346)
255 PRK05973 replicative DNA helic 91.0 0.16 3.5E-06 40.1 2.2 20 170-189 64-83 (237)
256 TIGR01193 bacteriocin_ABC ABC- 91.0 0.13 2.9E-06 46.8 2.0 20 171-190 501-520 (708)
257 COG1484 DnaC DNA replication p 90.9 0.13 2.7E-06 41.1 1.5 22 169-190 104-125 (254)
258 PHA02624 large T antigen; Prov 90.9 0.3 6.5E-06 43.7 3.9 31 160-190 421-451 (647)
259 COG0488 Uup ATPase components 90.9 0.13 2.8E-06 45.4 1.7 19 171-189 349-367 (530)
260 COG1419 FlhF Flagellar GTP-bin 90.9 0.25 5.5E-06 41.9 3.3 19 170-188 203-222 (407)
261 PRK15494 era GTPase Era; Provi 90.8 0.14 3E-06 42.7 1.7 21 169-189 51-71 (339)
262 PRK11823 DNA repair protein Ra 90.7 0.23 4.9E-06 43.0 3.0 34 156-189 66-99 (446)
263 TIGR00157 ribosome small subun 90.7 0.15 3.2E-06 40.5 1.7 19 171-189 121-139 (245)
264 PRK09452 potA putrescine/sperm 90.7 0.15 3.2E-06 43.1 1.8 20 171-190 41-60 (375)
265 PRK14723 flhF flagellar biosyn 90.7 0.15 3.2E-06 46.8 1.9 20 170-189 185-204 (767)
266 PRK11607 potG putrescine trans 90.7 0.15 3.2E-06 43.1 1.8 20 171-190 46-65 (377)
267 PRK09354 recA recombinase A; P 90.7 0.33 7.2E-06 40.5 3.9 31 158-188 47-78 (349)
268 KOG1547 Septin CDC10 and relat 90.7 0.37 8E-06 38.3 3.8 41 147-188 24-64 (336)
269 TIGR03796 NHPM_micro_ABC1 NHPM 90.6 0.15 3.3E-06 46.4 2.0 20 171-190 506-525 (710)
270 TIGR03453 partition_RepA plasm 90.6 0.41 8.9E-06 40.5 4.5 20 169-188 103-123 (387)
271 COG0542 clpA ATP-binding subun 90.6 0.46 9.9E-06 43.7 4.9 44 147-190 491-541 (786)
272 PRK08006 replicative DNA helic 90.6 1.5 3.3E-05 38.2 8.0 39 149-188 204-242 (471)
273 PRK04301 radA DNA repair and r 90.5 0.3 6.6E-06 40.1 3.5 32 158-189 90-121 (317)
274 PRK08939 primosomal protein Dn 90.4 0.15 3.2E-06 41.9 1.6 21 170-190 156-176 (306)
275 TIGR02524 dot_icm_DotB Dot/Icm 90.3 0.17 3.6E-06 42.5 1.8 20 170-189 134-153 (358)
276 TIGR01842 type_I_sec_PrtD type 90.3 0.16 3.5E-06 44.8 1.8 20 170-189 344-363 (544)
277 COG1245 Predicted ATPase, RNas 90.3 0.17 3.7E-06 43.7 1.9 20 170-189 100-119 (591)
278 PLN03187 meiotic recombination 90.3 0.3 6.5E-06 40.8 3.3 31 158-188 114-144 (344)
279 PRK13657 cyclic beta-1,2-gluca 90.3 0.17 3.7E-06 45.0 2.0 20 171-190 362-381 (588)
280 COG1119 ModF ABC-type molybden 90.3 0.16 3.4E-06 40.3 1.5 18 172-189 59-76 (257)
281 PRK10923 glnG nitrogen regulat 90.2 0.28 6.2E-06 42.3 3.3 44 147-190 138-181 (469)
282 KOG0727 26S proteasome regulat 90.2 0.32 6.9E-06 39.0 3.2 43 148-190 156-209 (408)
283 PRK10820 DNA-binding transcrip 90.2 0.23 4.9E-06 43.8 2.6 45 145-190 202-247 (520)
284 TIGR01663 PNK-3'Pase polynucle 90.1 0.18 4E-06 44.4 2.0 22 168-189 367-388 (526)
285 PLN03186 DNA repair protein RA 90.1 0.31 6.8E-06 40.6 3.2 35 154-188 107-141 (342)
286 PRK11174 cysteine/glutathione 90.0 0.19 4.1E-06 44.7 2.0 20 171-190 377-396 (588)
287 PRK10522 multidrug transporter 89.9 0.18 3.9E-06 44.6 1.8 20 170-189 349-368 (547)
288 COG0464 SpoVK ATPases of the A 89.9 0.14 3E-06 44.7 1.1 21 170-190 276-296 (494)
289 PF05621 TniB: Bacterial TniB 89.9 0.29 6.2E-06 40.0 2.8 43 147-189 34-80 (302)
290 PRK13869 plasmid-partitioning 89.9 0.51 1.1E-05 40.3 4.4 20 169-188 120-140 (405)
291 PRK11388 DNA-binding transcrip 89.9 0.26 5.6E-06 44.5 2.8 44 146-190 324-368 (638)
292 PRK10789 putative multidrug tr 89.8 0.2 4.3E-06 44.6 2.0 19 171-189 342-360 (569)
293 PRK00652 lpxK tetraacyldisacch 89.8 0.17 3.7E-06 41.9 1.5 21 169-189 48-70 (325)
294 TIGR01192 chvA glucan exporter 89.8 0.2 4.3E-06 44.7 2.0 20 170-189 361-380 (585)
295 TIGR02857 CydD thiol reductant 89.8 0.2 4.4E-06 44.0 2.0 21 170-190 348-368 (529)
296 PRK08506 replicative DNA helic 89.7 0.87 1.9E-05 39.7 5.8 40 149-189 172-211 (472)
297 PTZ00322 6-phosphofructo-2-kin 89.7 0.16 3.5E-06 46.1 1.4 21 170-190 215-235 (664)
298 TIGR00368 Mg chelatase-related 89.7 0.22 4.7E-06 43.7 2.1 41 146-190 191-231 (499)
299 TIGR03375 type_I_sec_LssB type 89.6 0.19 4.2E-06 45.7 1.8 19 171-189 492-510 (694)
300 PRK11160 cysteine/glutathione 89.6 0.21 4.5E-06 44.5 2.0 19 171-189 367-385 (574)
301 COG0468 RecA RecA/RadA recombi 89.6 0.39 8.4E-06 38.9 3.3 29 160-188 50-78 (279)
302 PRK11670 antiporter inner memb 89.6 0.28 6.1E-06 41.3 2.6 19 170-188 107-126 (369)
303 PRK14087 dnaA chromosomal repl 89.5 0.35 7.7E-06 41.8 3.3 21 170-190 141-161 (450)
304 COG1223 Predicted ATPase (AAA+ 89.5 0.42 9.1E-06 38.5 3.4 45 146-190 120-171 (368)
305 KOG0734 AAA+-type ATPase conta 89.5 0.24 5.2E-06 43.6 2.2 44 147-190 304-357 (752)
306 TIGR00958 3a01208 Conjugate Tr 89.5 0.2 4.4E-06 45.8 1.8 20 170-189 507-526 (711)
307 PRK09563 rbgA GTPase YlqF; Rev 89.4 0.44 9.6E-06 38.6 3.6 29 18-46 13-41 (287)
308 PRK05506 bifunctional sulfate 89.4 0.19 4.2E-06 45.3 1.6 21 170-190 460-480 (632)
309 KOG1805 DNA replication helica 89.3 0.16 3.5E-06 47.2 1.1 14 174-187 689-702 (1100)
310 TIGR02203 MsbA_lipidA lipid A 89.3 0.22 4.7E-06 44.1 1.8 19 171-189 359-377 (571)
311 PRK03003 GTP-binding protein D 89.3 0.43 9.2E-06 41.5 3.6 20 170-189 211-230 (472)
312 KOG0730 AAA+-type ATPase [Post 89.3 0.4 8.7E-06 43.0 3.4 43 148-190 434-488 (693)
313 TIGR02655 circ_KaiC circadian 89.2 0.34 7.4E-06 42.3 3.0 34 156-189 249-282 (484)
314 COG0465 HflB ATP-dependent Zn 89.2 0.25 5.5E-06 44.0 2.2 45 146-190 149-203 (596)
315 PRK01889 GTPase RsgA; Reviewed 89.0 0.36 7.7E-06 40.5 2.9 30 156-189 185-214 (356)
316 PHA02542 41 41 helicase; Provi 89.0 0.89 1.9E-05 39.7 5.3 40 149-188 169-208 (473)
317 PRK05748 replicative DNA helic 89.0 0.96 2.1E-05 39.0 5.6 39 149-188 183-221 (448)
318 PRK09165 replicative DNA helic 88.9 1 2.3E-05 39.5 5.7 39 149-188 197-235 (497)
319 PRK15424 propionate catabolism 88.8 0.37 8.1E-06 42.6 2.9 45 146-190 218-262 (538)
320 PHA02519 plasmid partition pro 88.8 0.67 1.5E-05 39.3 4.4 20 169-188 105-125 (387)
321 PRK13833 conjugal transfer pro 88.8 0.28 6.2E-06 40.6 2.0 19 172-190 146-164 (323)
322 TIGR02329 propionate_PrpR prop 88.7 0.36 7.8E-06 42.6 2.8 45 146-190 211-255 (526)
323 smart00350 MCM minichromosome 88.7 0.44 9.6E-06 41.9 3.3 45 146-190 202-256 (509)
324 PF01057 Parvo_NS1: Parvovirus 88.6 0.49 1.1E-05 38.2 3.2 32 159-190 102-133 (271)
325 PRK13705 plasmid-partitioning 88.6 0.65 1.4E-05 39.4 4.1 20 169-188 105-125 (388)
326 TIGR00954 3a01203 Peroxysomal 88.6 0.26 5.6E-06 44.7 1.8 19 171-189 479-497 (659)
327 TIGR03594 GTPase_EngA ribosome 88.6 0.48 1E-05 40.4 3.4 20 170-189 172-191 (429)
328 PRK06904 replicative DNA helic 88.6 2.9 6.3E-05 36.5 8.2 39 149-188 201-239 (472)
329 COG0305 DnaB Replicative DNA h 88.5 2.3 5E-05 36.6 7.4 39 149-188 176-214 (435)
330 PRK10790 putative multidrug tr 88.5 0.28 6.1E-06 43.7 2.0 20 171-190 368-387 (592)
331 TIGR01194 cyc_pep_trnsptr cycl 88.4 0.27 5.8E-06 43.6 1.8 20 170-189 368-387 (555)
332 PRK11860 bifunctional 3-phosph 88.4 0.4 8.7E-06 43.5 2.9 22 169-190 441-462 (661)
333 KOG0726 26S proteasome regulat 88.4 0.27 5.9E-06 40.2 1.6 43 148-190 186-239 (440)
334 TIGR02204 MsbA_rel ABC transpo 88.4 0.27 5.9E-06 43.6 1.8 19 171-189 367-385 (576)
335 PLN03211 ABC transporter G-25; 88.2 0.32 7E-06 44.1 2.2 21 170-190 94-114 (659)
336 PRK12608 transcription termina 88.1 0.27 5.9E-06 41.4 1.5 18 172-189 135-152 (380)
337 COG2074 2-phosphoglycerate kin 88.0 0.82 1.8E-05 36.6 4.0 20 170-189 89-108 (299)
338 TIGR02729 Obg_CgtA Obg family 88.0 0.29 6.2E-06 40.6 1.6 20 170-189 157-176 (329)
339 KOG0736 Peroxisome assembly fa 88.0 0.48 1E-05 43.4 3.1 42 149-190 674-725 (953)
340 PRK15115 response regulator Gl 87.8 0.95 2.1E-05 38.7 4.8 43 148-190 135-177 (444)
341 TIGR03029 EpsG chain length de 87.7 0.88 1.9E-05 36.3 4.3 35 154-188 85-122 (274)
342 PRK07004 replicative DNA helic 87.7 2.4 5.2E-05 36.8 7.2 39 150-189 194-232 (460)
343 TIGR01846 type_I_sec_HlyB type 87.7 0.31 6.8E-06 44.3 1.8 19 171-189 484-502 (694)
344 TIGR01420 pilT_fam pilus retra 87.6 0.33 7.3E-06 40.4 1.8 19 171-189 123-141 (343)
345 KOG0733 Nuclear AAA ATPase (VC 87.6 0.52 1.1E-05 42.2 3.0 44 147-190 190-243 (802)
346 KOG0731 AAA+-type ATPase conta 87.6 0.51 1.1E-05 43.2 3.0 45 146-190 310-364 (774)
347 PRK12299 obgE GTPase CgtA; Rev 87.5 0.31 6.7E-06 40.5 1.5 20 170-189 158-177 (335)
348 PRK05636 replicative DNA helic 87.5 1.8 3.9E-05 38.1 6.3 39 149-188 245-283 (505)
349 TIGR00993 3a0901s04IAP86 chlor 87.4 3.2 7E-05 37.8 7.8 84 100-189 51-137 (763)
350 PRK09518 bifunctional cytidyla 87.3 0.57 1.2E-05 42.9 3.3 20 170-189 450-469 (712)
351 PRK10733 hflB ATP-dependent me 87.2 0.32 7E-06 44.0 1.5 43 148-190 153-205 (644)
352 TIGR03819 heli_sec_ATPase heli 87.1 0.47 1E-05 39.6 2.4 20 170-189 178-197 (340)
353 PRK12298 obgE GTPase CgtA; Rev 87.0 0.37 8E-06 40.9 1.7 19 171-189 160-178 (390)
354 PF06431 Polyoma_lg_T_C: Polyo 86.9 0.79 1.7E-05 38.6 3.5 40 151-190 136-175 (417)
355 cd01133 F1-ATPase_beta F1 ATP 86.8 0.33 7.2E-06 39.2 1.3 19 171-189 70-88 (274)
356 COG1875 NYN ribonuclease and A 86.8 0.82 1.8E-05 38.5 3.6 37 150-188 227-263 (436)
357 PF08357 SEFIR: SEFIR domain; 86.7 0.72 1.6E-05 33.3 3.0 38 4-41 30-70 (150)
358 PRK05595 replicative DNA helic 86.6 1.7 3.8E-05 37.4 5.7 39 149-188 181-219 (444)
359 KOG4181 Uncharacterized conser 86.4 0.95 2.1E-05 37.9 3.7 33 155-188 174-206 (491)
360 PRK13764 ATPase; Provisional 86.4 0.39 8.4E-06 43.1 1.6 20 171-190 258-277 (602)
361 KOG2702 Predicted panthothenat 86.4 0.58 1.3E-05 37.0 2.4 37 152-190 103-139 (323)
362 KOG0780 Signal recognition par 86.4 1.7 3.6E-05 37.0 5.1 20 169-188 100-119 (483)
363 PRK00093 GTP-binding protein D 86.1 0.78 1.7E-05 39.2 3.3 20 170-189 173-192 (435)
364 COG4962 CpaF Flp pilus assembl 86.0 0.44 9.4E-06 39.6 1.6 42 148-189 151-192 (355)
365 PRK09862 putative ATP-dependen 85.8 0.71 1.5E-05 40.6 2.9 22 169-190 209-230 (506)
366 TIGR02768 TraA_Ti Ti-type conj 85.6 0.42 9.1E-06 44.0 1.5 19 171-189 369-387 (744)
367 TIGR01448 recD_rel helicase, p 85.5 0.44 9.5E-06 43.7 1.5 20 171-190 339-358 (720)
368 TIGR02915 PEP_resp_reg putativ 85.4 0.74 1.6E-05 39.4 2.8 43 147-190 139-182 (445)
369 PRK07196 fliI flagellum-specif 85.4 0.49 1.1E-05 40.7 1.7 21 169-189 154-174 (434)
370 COG4175 ProV ABC-type proline/ 85.3 0.59 1.3E-05 38.7 2.0 21 170-190 54-74 (386)
371 PRK06002 fliI flagellum-specif 85.3 0.56 1.2E-05 40.5 2.0 20 170-189 165-184 (450)
372 TIGR03597 GTPase_YqeH ribosome 85.1 0.86 1.9E-05 38.2 3.0 19 171-189 155-173 (360)
373 COG4987 CydC ABC-type transpor 85.1 0.49 1.1E-05 41.6 1.5 19 171-189 365-383 (573)
374 COG2607 Predicted ATPase (AAA+ 85.0 1 2.2E-05 35.9 3.1 45 146-190 59-105 (287)
375 COG1162 Predicted GTPases [Gen 85.0 1.1 2.3E-05 36.7 3.4 31 155-190 154-184 (301)
376 PLN02772 guanylate kinase 84.9 0.64 1.4E-05 39.5 2.1 21 169-189 134-154 (398)
377 KOG0733 Nuclear AAA ATPase (VC 84.7 0.51 1.1E-05 42.3 1.5 18 173-190 548-565 (802)
378 PRK08972 fliI flagellum-specif 84.6 0.65 1.4E-05 40.0 2.1 21 170-190 162-182 (444)
379 COG5192 BMS1 GTP-binding prote 84.5 0.54 1.2E-05 41.7 1.6 20 170-189 69-88 (1077)
380 COG3598 RepA RecA-family ATPas 84.5 0.53 1.2E-05 38.9 1.4 14 174-187 93-106 (402)
381 COG0552 FtsY Signal recognitio 84.5 0.79 1.7E-05 38.0 2.4 18 169-186 138-155 (340)
382 PLN03140 ABC transporter G fam 84.4 0.63 1.4E-05 46.1 2.1 21 170-190 191-211 (1470)
383 COG1084 Predicted GTPase [Gene 84.3 0.64 1.4E-05 38.4 1.8 22 169-190 167-188 (346)
384 COG0606 Predicted ATPase with 84.2 1.2 2.7E-05 38.6 3.6 41 145-189 177-217 (490)
385 PTZ00265 multidrug resistance 84.0 0.6 1.3E-05 46.2 1.8 20 171-190 412-431 (1466)
386 COG1855 ATPase (PilT family) [ 83.9 0.57 1.2E-05 40.5 1.4 18 173-190 266-283 (604)
387 COG0541 Ffh Signal recognition 83.8 3.4 7.3E-05 35.6 5.9 19 170-188 100-118 (451)
388 TIGR02533 type_II_gspE general 83.5 1.5 3.3E-05 38.3 4.0 19 171-189 243-261 (486)
389 KOG1942 DNA helicase, TBP-inte 83.4 1.3 2.9E-05 36.3 3.3 46 144-189 35-83 (456)
390 KOG0058 Peptide exporter, ABC 83.4 0.69 1.5E-05 41.9 1.8 19 171-189 495-513 (716)
391 TIGR00956 3a01205 Pleiotropic 83.2 0.76 1.7E-05 45.3 2.2 21 170-190 87-107 (1394)
392 TIGR00955 3a01204 The Eye Pigm 83.2 0.8 1.7E-05 41.2 2.2 20 170-189 51-70 (617)
393 PLN03232 ABC transporter C fam 82.9 0.7 1.5E-05 45.9 1.8 20 170-189 1262-1281(1495)
394 PRK07773 replicative DNA helic 82.8 2.6 5.7E-05 39.7 5.4 40 149-189 197-236 (886)
395 TIGR02525 plasmid_TraJ plasmid 82.6 0.8 1.7E-05 38.7 1.8 18 172-189 151-168 (372)
396 COG4586 ABC-type uncharacteriz 82.6 0.76 1.7E-05 37.2 1.6 21 169-189 49-69 (325)
397 KOG0066 eIF2-interacting prote 82.5 0.69 1.5E-05 40.0 1.4 20 170-189 613-632 (807)
398 PRK08149 ATP synthase SpaL; Va 82.4 0.82 1.8E-05 39.3 1.8 20 170-189 151-170 (428)
399 COG1341 Predicted GTPase or GT 82.3 1.4 3E-05 37.4 3.0 22 168-189 71-92 (398)
400 cd01136 ATPase_flagellum-secre 82.3 0.84 1.8E-05 37.8 1.8 20 170-189 69-88 (326)
401 PRK06321 replicative DNA helic 81.6 1.7 3.7E-05 37.9 3.5 40 149-189 206-245 (472)
402 TIGR01271 CFTR_protein cystic 81.5 0.79 1.7E-05 45.5 1.6 19 171-189 1246-1264(1490)
403 KOG0066 eIF2-interacting prote 81.3 0.66 1.4E-05 40.1 0.9 19 171-189 291-309 (807)
404 PRK05922 type III secretion sy 81.3 0.9 2E-05 39.1 1.7 19 171-189 158-176 (434)
405 PRK05688 fliI flagellum-specif 81.3 0.95 2.1E-05 39.2 1.8 20 170-189 168-187 (451)
406 TIGR00957 MRP_assoc_pro multi 81.3 0.88 1.9E-05 45.3 1.8 19 171-189 1313-1331(1522)
407 PRK11361 acetoacetate metaboli 81.2 1.6 3.5E-05 37.4 3.2 43 148-190 144-186 (457)
408 TIGR00956 3a01205 Pleiotropic 81.2 1 2.2E-05 44.5 2.2 19 171-189 790-808 (1394)
409 PLN03130 ABC transporter C fam 81.2 0.89 1.9E-05 45.5 1.8 19 171-189 1266-1284(1622)
410 PRK09519 recA DNA recombinatio 81.2 1.9 4.1E-05 39.9 3.8 32 157-188 46-78 (790)
411 PRK08472 fliI flagellum-specif 81.1 1 2.2E-05 38.8 1.9 21 170-190 157-177 (434)
412 CHL00189 infB translation init 81.0 0.89 1.9E-05 41.8 1.7 21 169-189 243-263 (742)
413 TIGR01818 ntrC nitrogen regula 81.0 1.5 3.3E-05 37.7 3.0 44 147-190 134-177 (463)
414 PTZ00265 multidrug resistance 81.0 0.9 2E-05 45.0 1.8 19 171-189 1195-1213(1466)
415 PRK13796 GTPase YqeH; Provisio 81.0 1.8 3.9E-05 36.4 3.4 18 172-189 162-179 (365)
416 PLN03140 ABC transporter G fam 81.0 1 2.3E-05 44.6 2.2 20 170-189 906-925 (1470)
417 PTZ00243 ABC transporter; Prov 80.9 0.92 2E-05 45.3 1.8 19 171-189 1337-1355(1560)
418 PRK12297 obgE GTPase CgtA; Rev 80.8 0.92 2E-05 39.0 1.6 20 170-189 158-177 (424)
419 TIGR01447 recD exodeoxyribonuc 80.7 0.86 1.9E-05 40.9 1.4 19 171-189 161-179 (586)
420 PHA03132 thymidine kinase; Pro 80.6 1.1 2.5E-05 39.9 2.1 21 170-190 257-277 (580)
421 KOG1970 Checkpoint RAD17-RFC c 80.5 1.8 3.8E-05 38.4 3.2 36 154-189 89-129 (634)
422 KOG0927 Predicted transporter 80.3 1.1 2.3E-05 39.6 1.8 21 170-190 101-121 (614)
423 PRK14086 dnaA chromosomal repl 80.3 0.95 2E-05 40.7 1.5 20 171-190 315-334 (617)
424 PRK12296 obgE GTPase CgtA; Rev 80.2 0.97 2.1E-05 39.7 1.5 20 170-189 159-178 (500)
425 PRK07721 fliI flagellum-specif 80.2 1.1 2.4E-05 38.6 1.9 21 169-189 157-177 (438)
426 TIGR01257 rim_protein retinal- 80.1 1 2.2E-05 46.2 1.8 19 171-189 1966-1984(2272)
427 PRK11058 GTPase HflX; Provisio 79.9 1.1 2.4E-05 38.5 1.8 21 169-189 196-216 (426)
428 PRK06820 type III secretion sy 79.9 1.1 2.3E-05 38.8 1.7 19 171-189 164-182 (440)
429 PRK09518 bifunctional cytidyla 79.8 1 2.2E-05 41.3 1.7 20 170-189 275-294 (712)
430 COG3973 Superfamily I DNA and 79.7 2.1 4.5E-05 38.5 3.3 18 170-187 226-243 (747)
431 PRK08927 fliI flagellum-specif 79.5 1.2 2.5E-05 38.5 1.8 20 170-189 158-177 (442)
432 COG4988 CydD ABC-type transpor 79.4 1.2 2.6E-05 39.4 1.8 20 170-189 347-366 (559)
433 PRK06315 type III secretion sy 79.2 1.1 2.3E-05 38.8 1.4 21 170-190 164-184 (442)
434 KOG0741 AAA+-type ATPase [Post 79.0 2.2 4.7E-05 37.8 3.2 21 169-189 537-557 (744)
435 COG3854 SpoIIIAA ncharacterize 78.9 1.1 2.5E-05 35.5 1.4 16 173-188 140-155 (308)
436 PRK10875 recD exonuclease V su 78.7 1.1 2.4E-05 40.4 1.4 19 171-189 168-186 (615)
437 TIGR00487 IF-2 translation ini 78.6 1.2 2.6E-05 39.9 1.7 20 170-189 87-106 (587)
438 PRK09302 circadian clock prote 78.6 1.8 3.9E-05 38.0 2.7 34 156-189 259-292 (509)
439 KOG0057 Mitochondrial Fe/S clu 78.5 1.2 2.6E-05 39.3 1.5 19 171-189 379-397 (591)
440 COG0593 DnaA ATPase involved i 78.5 1 2.2E-05 38.5 1.1 21 170-190 113-133 (408)
441 PRK07594 type III secretion sy 78.4 1.2 2.7E-05 38.3 1.7 20 170-189 155-174 (433)
442 PRK07960 fliI flagellum-specif 78.4 1.1 2.5E-05 38.7 1.4 20 170-189 175-194 (455)
443 KOG0741 AAA+-type ATPase [Post 78.3 1.6 3.4E-05 38.7 2.2 23 168-190 254-276 (744)
444 PRK06749 replicative DNA helic 78.2 4.5 9.8E-05 34.8 5.0 40 148-188 165-204 (428)
445 PF00503 G-alpha: G-protein al 78.1 1.2 2.5E-05 37.8 1.4 18 172-189 60-77 (389)
446 TIGR02546 III_secr_ATP type II 78.0 1.4 3.1E-05 37.8 1.9 21 169-189 144-164 (422)
447 TIGR01613 primase_Cterm phage/ 77.9 2.7 5.9E-05 34.3 3.5 20 170-189 76-95 (304)
448 PRK14712 conjugal transfer nic 77.9 2.2 4.7E-05 42.6 3.3 19 171-189 853-871 (1623)
449 PF10137 TIR-like: Predicted n 77.9 3.6 7.8E-05 29.2 3.6 37 4-40 24-61 (125)
450 TIGR03498 FliI_clade3 flagella 77.8 1.5 3.2E-05 37.7 1.9 20 170-189 140-159 (418)
451 KOG2355 Predicted ABC-type tra 77.7 1.2 2.5E-05 34.9 1.1 15 175-189 45-59 (291)
452 PRK13826 Dtr system oriT relax 77.6 1.3 2.7E-05 42.6 1.6 20 170-189 397-416 (1102)
453 PLN03232 ABC transporter C fam 77.6 1.3 2.9E-05 44.0 1.8 20 171-190 644-663 (1495)
454 cd00484 PEPCK_ATP Phosphoenolp 77.5 1.6 3.6E-05 38.2 2.1 19 170-188 209-227 (508)
455 TIGR03496 FliI_clade1 flagella 77.3 1.6 3.4E-05 37.4 2.0 20 170-189 137-156 (411)
456 TIGR00376 DNA helicase, putati 77.2 1.4 3E-05 39.9 1.7 17 172-188 175-191 (637)
457 PF00154 RecA: recA bacterial 77.2 1.6 3.4E-05 36.2 1.8 19 170-188 53-71 (322)
458 KOG0054 Multidrug resistance-a 77.2 1.3 2.8E-05 43.4 1.5 21 170-190 1166-1186(1381)
459 PRK13709 conjugal transfer nic 77.2 2.4 5.1E-05 42.7 3.3 19 171-189 985-1003(1747)
460 TIGR01026 fliI_yscN ATPase Fli 77.1 1.6 3.4E-05 37.8 1.9 20 170-189 163-182 (440)
461 TIGR00630 uvra excinuclease AB 77.1 1.7 3.7E-05 41.0 2.3 18 171-188 634-651 (924)
462 KOG0781 Signal recognition par 77.1 4.4 9.5E-05 35.4 4.5 20 169-188 377-397 (587)
463 PTZ00111 DNA replication licen 77.0 5.5 0.00012 37.5 5.4 46 145-190 448-512 (915)
464 TIGR00957 MRP_assoc_pro multi 77.0 1.4 3.1E-05 43.9 1.8 20 171-190 665-684 (1522)
465 PRK09099 type III secretion sy 76.7 1.7 3.7E-05 37.6 2.0 21 169-189 162-182 (441)
466 TIGR03497 FliI_clade2 flagella 76.6 1.6 3.5E-05 37.4 1.8 21 169-189 136-156 (413)
467 TIGR01257 rim_protein retinal- 76.6 1.4 3.1E-05 45.2 1.7 19 171-189 957-975 (2272)
468 PRK06936 type III secretion sy 76.5 1.7 3.7E-05 37.5 1.9 21 169-189 161-181 (439)
469 TIGR00224 pckA phosphoenolpyru 76.5 1.8 3.8E-05 38.1 2.0 18 171-188 234-251 (532)
470 COG1066 Sms Predicted ATP-depe 76.5 2.7 5.9E-05 36.0 3.1 33 155-187 78-110 (456)
471 COG2204 AtoC Response regulato 75.7 2.8 6E-05 36.5 3.0 45 145-190 139-184 (464)
472 TIGR01271 CFTR_protein cystic 75.7 1.6 3.5E-05 43.4 1.8 20 171-190 453-472 (1490)
473 KOG0735 AAA+-type ATPase [Post 75.7 1.5 3.3E-05 40.1 1.4 19 172-190 433-451 (952)
474 PRK13889 conjugal transfer rel 75.5 2.7 5.9E-05 40.0 3.1 18 172-189 364-381 (988)
475 KOG2228 Origin recognition com 75.5 2.9 6.3E-05 35.0 2.9 41 147-187 24-66 (408)
476 PF05272 VirE: Virulence-assoc 75.5 3.5 7.6E-05 31.6 3.3 19 171-189 53-71 (198)
477 PTZ00311 phosphoenolpyruvate c 75.2 2.1 4.6E-05 37.9 2.2 19 171-189 257-275 (561)
478 PLN03126 Elongation factor Tu; 75.2 3.5 7.5E-05 36.1 3.5 21 169-189 80-100 (478)
479 PLN03130 ABC transporter C fam 74.7 1.8 3.8E-05 43.5 1.8 20 171-190 644-663 (1622)
480 cd01132 F1_ATPase_alpha F1 ATP 74.7 1.8 4E-05 34.9 1.6 17 171-187 70-86 (274)
481 PRK12597 F0F1 ATP synthase sub 74.6 1.6 3.5E-05 37.9 1.3 18 171-188 144-161 (461)
482 PRK00349 uvrA excinuclease ABC 74.4 2.2 4.8E-05 40.4 2.2 19 171-189 636-654 (943)
483 PRK09280 F0F1 ATP synthase sub 74.4 1.6 3.6E-05 37.9 1.3 19 171-189 145-163 (463)
484 KOG1514 Origin recognition com 74.3 3.1 6.7E-05 37.9 3.0 46 144-189 393-441 (767)
485 KOG0652 26S proteasome regulat 74.3 1.8 3.8E-05 35.1 1.4 42 148-189 172-224 (424)
486 cd01135 V_A-ATPase_B V/A-type 74.0 1.8 3.8E-05 35.1 1.3 18 171-188 70-87 (276)
487 KOG0729 26S proteasome regulat 73.4 2 4.3E-05 34.9 1.5 19 172-190 213-231 (435)
488 KOG3859 Septins (P-loop GTPase 73.3 5.6 0.00012 32.5 3.9 42 146-188 19-60 (406)
489 cd01134 V_A-ATPase_A V/A-type 73.0 2 4.4E-05 36.0 1.5 19 171-189 158-176 (369)
490 PF01293 PEPCK_ATP: Phosphoeno 73.0 2.7 5.9E-05 36.6 2.3 16 172-187 212-227 (466)
491 PTZ00243 ABC transporter; Prov 72.7 2.1 4.6E-05 42.8 1.8 20 171-190 687-706 (1560)
492 PLN02597 phosphoenolpyruvate c 72.7 1.8 4E-05 38.1 1.2 19 170-188 246-264 (555)
493 TIGR02688 conserved hypothetic 72.6 2.3 5E-05 36.7 1.7 18 173-190 212-229 (449)
494 COG3267 ExeA Type II secretory 72.4 3.4 7.4E-05 33.1 2.5 39 151-189 32-70 (269)
495 COG2842 Uncharacterized ATPase 72.2 6.8 0.00015 32.0 4.2 42 146-188 71-112 (297)
496 PRK12678 transcription termina 72.1 2.1 4.6E-05 38.4 1.4 18 172-189 418-435 (672)
497 CHL00206 ycf2 Ycf2; Provisiona 72.1 2 4.4E-05 43.5 1.5 19 172-190 1632-1650(2281)
498 PRK05306 infB translation init 71.9 2.2 4.8E-05 39.6 1.6 20 170-189 290-309 (787)
499 PRK06793 fliI flagellum-specif 71.6 2.5 5.5E-05 36.4 1.8 20 170-189 156-175 (432)
500 COG2401 ABC-type ATPase fused 71.6 1.9 4.2E-05 37.1 1.1 19 171-189 410-428 (593)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=3e-55 Score=408.07 Aligned_cols=186 Identities=37% Similarity=0.674 Sum_probs=175.5
Q ss_pred CCCeeEEEeCCCCCcccchHHHHHHhhcccceEEEecCCCcCchhhHHHHHHHHHhhhcCCeeEEeEEeecCCccccccC
Q 047923 2 RQNIQTFIDDQLNRGDEISESIAYAIESPAISVIIFSEGYPFSRWCLHELVKILKYKKEYAHIVIPGFYRGDPSEVRSQT 81 (190)
Q Consensus 2 ~~gi~~f~d~~~~~g~~~~~~l~~ai~~s~~~ivv~S~~y~~S~wcl~El~~i~~~~~~~~~~v~PvFy~v~ps~Vr~q~ 81 (190)
++||+||+|+++++|+.|++++++||++|+++|||||++||+|+||||||++|++|+++.+++|+||||+|+|+|||+|+
T Consensus 38 ~~~i~~f~d~~~~~g~~~~~~l~~~i~~s~~~ivv~s~~ya~s~wcl~el~~i~~~~~~~~~~v~pvfy~v~p~~v~~~~ 117 (1153)
T PLN03210 38 RKLIIAFKDNEIERSQSLDPELKQAIRDSRIAVVVFSKNYASSSWCLNELLEIVRCKEELGQLVIPVFYGLDPSHVRKQT 117 (1153)
T ss_pred HCCCeEEccCCccCCCcccHHHHHHHHhCeEEEEEecCCcccchHHHHHHHHHHHhhhhcCceEEEEEecccHHHHhhcc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhhHHHHHHHhhhhhhHHHHhHHHHHHHhhccccccCc----hhhhHHHHHHHHHhhhhhhhhccccccccccchhHH
Q 047923 82 GSFGNSFSKLEERFNENSEKLQSWRNATKEAASFMAFILP----ESELIKEVVNQILKRLAEVLLCDKENQLVGRESRVE 157 (190)
Q Consensus 82 g~~~~~f~~~~~~~~~~~e~v~kWr~AL~ev~~~~g~~~~----e~~~i~~iv~~v~~~l~~~~~~~~~~~~vG~d~~~~ 157 (190)
|.|+++|.++.... ..+++++||+||+++++++|+++. |+++|++|+++|++++...++ .+..++||++.+++
T Consensus 118 g~f~~~f~~~~~~~--~~~~~~~w~~al~~~~~~~g~~~~~~~~E~~~i~~Iv~~v~~~l~~~~~-~~~~~~vG~~~~l~ 194 (1153)
T PLN03210 118 GDFGEAFEKTCQNK--TEDEKIQWKQALTDVANILGYHSQNWPNEAKMIEEIANDVLGKLNLTPS-NDFEDFVGIEDHIA 194 (1153)
T ss_pred chHHHHHHHHhccc--chhHHHHHHHHHHHHhCcCceecCCCCCHHHHHHHHHHHHHHhhccccC-cccccccchHHHHH
Confidence 99999999987654 345799999999999999999875 999999999999999988776 78889999999999
Q ss_pred HHHHHhhhcCCCeEEEEEEcCCCCcHHHHhccC
Q 047923 158 IIESLLAAESKDVYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 158 ~~~~~l~~~~~~~~vi~i~G~gGiGKTTla~~v 190 (190)
++.++|..++++++++|||||||+||||||+++
T Consensus 195 ~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l 227 (1153)
T PLN03210 195 KMSSLLHLESEEVRMVGIWGSSGIGKTTIARAL 227 (1153)
T ss_pred HHHHHHccccCceEEEEEEcCCCCchHHHHHHH
Confidence 999999888888999999999999999999864
No 2
>PLN03194 putative disease resistance protein; Provisional
Probab=100.00 E-value=1e-39 Score=242.68 Aligned_cols=122 Identities=31% Similarity=0.506 Sum_probs=110.6
Q ss_pred CCCeeEEEeC-CCCCcccchHHHHHHhhcccceEEEecCCCcCchhhHHHHHHHHHhhhcCCeeEEeEEeecCCcccccc
Q 047923 2 RQNIQTFIDD-QLNRGDEISESIAYAIESPAISVIIFSEGYPFSRWCLHELVKILKYKKEYAHIVIPGFYRGDPSEVRSQ 80 (190)
Q Consensus 2 ~~gi~~f~d~-~~~~g~~~~~~l~~ai~~s~~~ivv~S~~y~~S~wcl~El~~i~~~~~~~~~~v~PvFy~v~ps~Vr~q 80 (190)
++||+||+|+ ++++|+.|.+.|.+||++|+++|||||++|++|+|||+||++|++|+ ..|+||||+|+|+|||+|
T Consensus 52 ~~GI~vF~D~~el~~G~~i~~~L~~AIeeSri~IvVfS~~Ya~S~WCLdEL~~I~e~~----~~ViPIFY~VdPsdVr~q 127 (187)
T PLN03194 52 RLNLRPFLDNKNMKPGDKLFDKINSAIRNCKVGVAVFSPRYCESYFCLHELALIMESK----KRVIPIFCDVKPSQLRVV 127 (187)
T ss_pred HCCCEEEEcCccccCCCcHHHHHHHHHHhCeEEEEEECCCcccchhHHHHHHHHHHcC----CEEEEEEecCCHHHhhcc
Confidence 5799999999 89999999999999999999999999999999999999999999975 479999999999999997
Q ss_pred -CCchhhHHHHHHHhhhhhhHHHHhHHHHHHHhhccccccCc-----hhhhHHHHHHHHHhhhhhh
Q 047923 81 -TGSFGNSFSKLEERFNENSEKLQSWRNATKEAASFMAFILP-----ESELIKEVVNQILKRLAEV 140 (190)
Q Consensus 81 -~g~~~~~f~~~~~~~~~~~e~v~kWr~AL~ev~~~~g~~~~-----e~~~i~~iv~~v~~~l~~~ 140 (190)
.+. .+.+++++||.||.++++++|+++. |+++|+.|+++|.++|-..
T Consensus 128 ~~~~-------------~~~e~v~~Wr~AL~~va~l~G~~~~~~~~~e~e~i~~iv~~v~k~l~~~ 180 (187)
T PLN03194 128 DNGT-------------CPDEEIRRFNWALEEAKYTVGLTFDSLKGNWSEVVTMASDAVIKNLIEL 180 (187)
T ss_pred ccCC-------------CCHHHHHHHHHHHHHHhccccccCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 432 1246899999999999999998764 8999999999999987544
No 3
>PF01582 TIR: TIR domain; InterPro: IPR000157 In Drosophila melanogaster the Toll protein is involved in establishment of dorso-ventral polarity in the embryo. In addition, members of the Toll family play a key role in innate antibacterial and antifungal immunity in insects as well as in mammals. These proteins are type-I transmembrane receptors that share an intracellular 200 residue domain with the interleukin-1 receptor (IL-1R), the Toll/IL-1R homologous region (TIR). The similarity between Toll-like receptors (LTRs) and IL-1R is not restricted to sequence homology since these proteins also share a similar signalling pathway. They both induce the activation of a Rel type transcription factor via an adaptor protein and a protein kinase []. Interestingly, MyD88, a cytoplasmic adaptor protein found in mammals, contains a TIR domain associated to a DEATH domain (see IPR000488 from INTERPRO) [, , ]. Besides the mammalian and Drosophila melanogaster proteins, a TIR domain is also found in a number of plant proteins implicated in host defence []. As MyD88, these proteins are cytoplasmic. Site directed mutagenesis and deletion analysis have shown that the TIR domain is essential for Toll and IL-1R activities. Sequence analysis have revealed the presence of three highly conserved regions among the different members of the family: box 1 (FDAFISY), box 2 (GYKLC-RD-PG), and box 3 (a conserved W surrounded by basic residues). It has been proposed that boxes 1 and 2 are involved in the binding of proteins involved in signalling, whereas box 3 is primarily involved in directing localization of receptor, perhaps through interactions with cytoskeletal elements [].; GO: 0005515 protein binding, 0007165 signal transduction, 0005622 intracellular; PDB: 3J0A_A 2J67_B 3JRN_A 1FYV_A 1O77_D 1FYX_A 1FYW_A 3OZI_B 1T3G_B 2JS7_A ....
Probab=99.84 E-value=3.8e-22 Score=145.42 Aligned_cols=108 Identities=26% Similarity=0.463 Sum_probs=93.8
Q ss_pred CCeeEEEeC-CCCCcccchHHHHHHhhcccceEEEecCCCcCchhhHHHHHHHHHhhhcCC--eeEEeEEeecCCcccc-
Q 047923 3 QNIQTFIDD-QLNRGDEISESIAYAIESPAISVIIFSEGYPFSRWCLHELVKILKYKKEYA--HIVIPGFYRGDPSEVR- 78 (190)
Q Consensus 3 ~gi~~f~d~-~~~~g~~~~~~l~~ai~~s~~~ivv~S~~y~~S~wcl~El~~i~~~~~~~~--~~v~PvFy~v~ps~Vr- 78 (190)
.|+++|+++ |+.+|..+.+++.++|++|+++|+|||++|++|.||+.||..++++....+ ..|+|+||+|.+++++
T Consensus 27 ~g~~~c~~~rD~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~s~wc~~el~~a~~~~~~~~~~~~Il~v~~~v~~~~~~~ 106 (141)
T PF01582_consen 27 YGYKLCLDERDFLPGESILDNIQEAIERSRRTIVVLSRNYLSSEWCLFELQEALERLLEEGRDKLILPVFYDVSPSDVRP 106 (141)
T ss_dssp STS-EEEHHHCTSSSSCHHHHHHHHHHTEEEEEEEESHHHHHHTHHHHHHHHHHHHHHCSTCTTEEEEESSSS-CHHCHT
T ss_pred CCeEEEEechhhcccccccchhhHhhhhceeeEEEeecccccccchhhhhhhhhhhccccccccceeeEeccCChhhcCh
Confidence 399999999 999999999999999999999999999999999999999999999986644 8999999999999999
Q ss_pred ccCCchhhHHHHHHHhhhhh--hHHHHhHHHHHH
Q 047923 79 SQTGSFGNSFSKLEERFNEN--SEKLQSWRNATK 110 (190)
Q Consensus 79 ~q~g~~~~~f~~~~~~~~~~--~e~v~kWr~AL~ 110 (190)
.+.+.|...|..+......+ .++...|+.++.
T Consensus 107 ~~~~~~~~~~~~~~~w~~~~~~~~~~~fW~~l~~ 140 (141)
T PF01582_consen 107 DQSLRFLLRFLTYLRWPDDDSREDRSWFWKKLRY 140 (141)
T ss_dssp HHHHHHHHHCTHCEETSSSGGGGGHHHHHHHHHH
T ss_pred hhhHHHHHHhhhheeCCCCCCccHHHHHHHHHhc
Confidence 68888888887776655543 467899998764
No 4
>smart00255 TIR Toll - interleukin 1 - resistance.
Probab=99.69 E-value=2.6e-16 Score=113.97 Aligned_cols=110 Identities=34% Similarity=0.540 Sum_probs=90.1
Q ss_pred CCCeeEEEeCCCCCcccchHHHHHHhhcccceEEEecCCCcCchhhHHHHHHHHHhhhc-CCeeEEeEEeecCCcccccc
Q 047923 2 RQNIQTFIDDQLNRGDEISESIAYAIESPAISVIIFSEGYPFSRWCLHELVKILKYKKE-YAHIVIPGFYRGDPSEVRSQ 80 (190)
Q Consensus 2 ~~gi~~f~d~~~~~g~~~~~~l~~ai~~s~~~ivv~S~~y~~S~wcl~El~~i~~~~~~-~~~~v~PvFy~v~ps~Vr~q 80 (190)
..|+.+|.|+....+.... +|.++|++|+..|+|+|++|..|.||..|+..+..+... ....||||+|+..|+++..+
T Consensus 28 ~~~~~v~~d~~~~~~~~~~-~i~~~i~~s~~~i~vlS~~~~~S~w~~~E~~~a~~~~~~~~~~~iIPI~~~~~~~~~~~~ 106 (140)
T smart00255 28 GYGLCVFIDDFEPGGGDLE-EIDEAIEKSRIAIVVLSPNYAESEWCLDELVAALENALEEGGLRVIPIFYEVIPSDVRKQ 106 (140)
T ss_pred cCCcEEEecCcccccchHH-HHHHHHHHCcEEEEEECcccccChhHHHHHHHHHHHHHHcCCCeEEEEEEecChHHHHhc
Confidence 4589999998544444443 999999999999999999999999999999999987754 56799999999999999999
Q ss_pred CCchhhHHHHHHHhhhhhhHHHHhHHHHHHHhh
Q 047923 81 TGSFGNSFSKLEERFNENSEKLQSWRNATKEAA 113 (190)
Q Consensus 81 ~g~~~~~f~~~~~~~~~~~e~v~kWr~AL~ev~ 113 (190)
.+.+...+..+.....++..+ ..|+.++..+.
T Consensus 107 ~~~l~~~~~~~~~~w~~~~~~-~fW~~~~~~l~ 138 (140)
T smart00255 107 PGKFRKVLKKNYLKWPEDEKE-RFWKKALYAVP 138 (140)
T ss_pred ccHHHHHHHHHHhhcCCchhH-HHHHHHHHHhc
Confidence 999998887775555554433 68999887665
No 5
>PF13676 TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_A 3UB2_A.
Probab=99.19 E-value=3e-12 Score=87.86 Aligned_cols=70 Identities=31% Similarity=0.521 Sum_probs=56.4
Q ss_pred CCCeeEEEeCCCCCcccchHHHHHHhhcccceEEEecCCCcCchhhHHHHHHHHHhhhcCCeeEEeEEeecCCccc
Q 047923 2 RQNIQTFIDDQLNRGDEISESIAYAIESPAISVIIFSEGYPFSRWCLHELVKILKYKKEYAHIVIPGFYRGDPSEV 77 (190)
Q Consensus 2 ~~gi~~f~d~~~~~g~~~~~~l~~ai~~s~~~ivv~S~~y~~S~wcl~El~~i~~~~~~~~~~v~PvFy~v~ps~V 77 (190)
++|+++|+|.++.+|+++.+.+.++|++|+..|+++|++|..|.||..|+....+ .+..|+||. +++.++
T Consensus 22 ~~g~~v~~d~~~~~g~~~~~~i~~~i~~s~~~i~~~S~~~~~s~~~~~E~~~a~~----~~~~iipv~--~~~~~~ 91 (102)
T PF13676_consen 22 SAGIRVFLDRDIPPGEDWREEIERAIERSDCVIVLLSPNYLKSPWCRFELGAAWK----RGKPIIPVR--LDPCEL 91 (102)
T ss_dssp HTT--EE-GGEE-TTS-HHCCCHHCCTTEEEEEEEEEHHHHCTHHHHHHHHHHHC----TSESEEEEE--CSGGGS
T ss_pred hcCCEEEEEEeCCCCCCHHHHHHHHHHhCCEEEEEECcccccChHHHHHHHHHHH----CCCEEEEEE--ECCcCC
Confidence 4799999999889999999999999999999999999999999999999888733 456899996 555544
No 6
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.59 E-value=2.8e-08 Score=91.22 Aligned_cols=39 Identities=41% Similarity=0.624 Sum_probs=35.2
Q ss_pred cccchhHHHHHHHhhhcCCCeEEEEEEcCCCCcHHHHhccC
Q 047923 150 VGRESRVEIIESLLAAESKDVYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 150 vG~d~~~~~~~~~l~~~~~~~~vi~i~G~gGiGKTTla~~v 190 (190)
||.+..++.+.+.|..+.+ .++||+||||+||||||+.+
T Consensus 161 VG~e~~~~kl~~~L~~d~~--~iv~i~GMGGvGKTTL~~qi 199 (889)
T KOG4658|consen 161 VGLETMLEKLWNRLMEDDV--GIVGIYGMGGVGKTTLARQI 199 (889)
T ss_pred ccHHHHHHHHHHHhccCCC--CEEEEECCCcccHHHHHHHH
Confidence 9999999999999877644 99999999999999999864
No 7
>PTZ00202 tuzin; Provisional
Probab=97.75 E-value=5.1e-05 Score=64.64 Aligned_cols=46 Identities=22% Similarity=0.288 Sum_probs=38.0
Q ss_pred cccccccccchhHHHHHHHhhhcCCC-eEEEEEEcCCCCcHHHHhcc
Q 047923 144 DKENQLVGRESRVEIIESLLAAESKD-VYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 144 ~~~~~~vG~d~~~~~~~~~l~~~~~~-~~vi~i~G~gGiGKTTla~~ 189 (190)
.....++||+.++..+...|...+.. .+++.|.|++|.|||||++.
T Consensus 259 a~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~ 305 (550)
T PTZ00202 259 AVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRS 305 (550)
T ss_pred CCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHH
Confidence 34578999999999999998754333 56999999999999999764
No 8
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=97.60 E-value=7.6e-05 Score=58.14 Aligned_cols=45 Identities=24% Similarity=0.397 Sum_probs=31.0
Q ss_pred ccccccccchhHHHHHHHhhh---cCCCeEEEEEEcCCCCcHHHHhcc
Q 047923 145 KENQLVGRESRVEIIESLLAA---ESKDVYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 145 ~~~~~vG~d~~~~~~~~~l~~---~~~~~~vi~i~G~gGiGKTTla~~ 189 (190)
..++++|.+.-+..+.-++.. ..+.+.-+=+||.+|.||||||..
T Consensus 22 ~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~I 69 (233)
T PF05496_consen 22 SLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARI 69 (233)
T ss_dssp SCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHH
T ss_pred CHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHH
Confidence 347899999888877655543 234477888999999999999974
No 9
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=97.45 E-value=9e-05 Score=61.17 Aligned_cols=46 Identities=22% Similarity=0.367 Sum_probs=35.8
Q ss_pred ccccccccchhHHHHHHHhhh---cCCCeEEEEEEcCCCCcHHHHhccC
Q 047923 145 KENQLVGRESRVEIIESLLAA---ESKDVYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 145 ~~~~~vG~d~~~~~~~~~l~~---~~~~~~vi~i~G~gGiGKTTla~~v 190 (190)
...+++|++..++.+..++.. .....+.+-++|.+|+||||||+++
T Consensus 23 ~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~i 71 (328)
T PRK00080 23 SLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANII 71 (328)
T ss_pred CHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHH
Confidence 346799999999999877753 2223556779999999999999863
No 10
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=97.42 E-value=0.00011 Score=61.98 Aligned_cols=47 Identities=23% Similarity=0.232 Sum_probs=36.7
Q ss_pred cccccccccchhHHHHHHHhhhc--CCCeEEEEEEcCCCCcHHHHhccC
Q 047923 144 DKENQLVGRESRVEIIESLLAAE--SKDVYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 144 ~~~~~~vG~d~~~~~~~~~l~~~--~~~~~vi~i~G~gGiGKTTla~~v 190 (190)
..+..++||+.+++++...|... ......+-|+|.+|+||||+++.+
T Consensus 27 ~~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v 75 (394)
T PRK00411 27 YVPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKV 75 (394)
T ss_pred CcCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHH
Confidence 45678999999999999888542 223344669999999999999853
No 11
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.33 E-value=0.00016 Score=60.13 Aligned_cols=43 Identities=19% Similarity=0.257 Sum_probs=36.3
Q ss_pred cccccchhHHHHHHHhhhc----CCCeEEEEEEcCCCCcHHHHhccC
Q 047923 148 QLVGRESRVEIIESLLAAE----SKDVYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 148 ~~vG~d~~~~~~~~~l~~~----~~~~~vi~i~G~gGiGKTTla~~v 190 (190)
+++|++..++++.+.+... ....++++++|.+|.||||||+++
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~L 98 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECL 98 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHH
Confidence 7999999999999888652 234689999999999999999864
No 12
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=97.10 E-value=0.00015 Score=60.66 Aligned_cols=42 Identities=26% Similarity=0.474 Sum_probs=27.1
Q ss_pred ccccccchhH---HHHHHHhhhcCCCeEEEEEEcCCCCcHHHHhccC
Q 047923 147 NQLVGRESRV---EIIESLLAAESKDVYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 147 ~~~vG~d~~~---~~~~~~l~~~~~~~~vi~i~G~gGiGKTTla~~v 190 (190)
.++||.+.-+ ..+..++. +..+..+-+||.+|+||||||+.+
T Consensus 24 de~vGQ~HLlg~~~~lrr~v~--~~~l~SmIl~GPPG~GKTTlA~li 68 (436)
T COG2256 24 DEVVGQEHLLGEGKPLRRAVE--AGHLHSMILWGPPGTGKTTLARLI 68 (436)
T ss_pred HHhcChHhhhCCCchHHHHHh--cCCCceeEEECCCCCCHHHHHHHH
Confidence 4566665433 12223332 345777889999999999999853
No 13
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=97.02 E-value=0.00024 Score=59.03 Aligned_cols=42 Identities=33% Similarity=0.531 Sum_probs=27.9
Q ss_pred ccccccchhHHH---HHHHhhhcCCCeEEEEEEcCCCCcHHHHhccC
Q 047923 147 NQLVGRESRVEI---IESLLAAESKDVYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 147 ~~~vG~d~~~~~---~~~~l~~~~~~~~vi~i~G~gGiGKTTla~~v 190 (190)
.++||.+.-+-+ +.+++ +.+.+..+-+||.+|.||||||+.+
T Consensus 138 ~dyvGQ~hlv~q~gllrs~i--eq~~ipSmIlWGppG~GKTtlArli 182 (554)
T KOG2028|consen 138 DDYVGQSHLVGQDGLLRSLI--EQNRIPSMILWGPPGTGKTTLARLI 182 (554)
T ss_pred HHhcchhhhcCcchHHHHHH--HcCCCCceEEecCCCCchHHHHHHH
Confidence 456666543322 22222 3356888899999999999999853
No 14
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=96.96 E-value=0.014 Score=42.69 Aligned_cols=50 Identities=14% Similarity=0.167 Sum_probs=28.9
Q ss_pred HHHHhhcccceEEEecCCCcCchhhHHHHHHHHHhhhcCCeeEEeEEeecCC
Q 047923 23 IAYAIESPAISVIIFSEGYPFSRWCLHELVKILKYKKEYAHIVIPGFYRGDP 74 (190)
Q Consensus 23 l~~ai~~s~~~ivv~S~~y~~S~wcl~El~~i~~~~~~~~~~v~PvFy~v~p 74 (190)
+.++++++++.+.|..-....+.. -.++.+.+... ..+..++-|+=++|-
T Consensus 2 ~~~~l~~aD~il~VvD~~~p~~~~-~~~i~~~l~~~-~~~~p~ilVlNKiDl 51 (157)
T cd01858 2 LYKVIDSSDVVIQVLDARDPMGTR-CKHVEEYLKKE-KPHKHLIFVLNKCDL 51 (157)
T ss_pred hhHhhhhCCEEEEEEECCCCcccc-CHHHHHHHHhc-cCCCCEEEEEEchhc
Confidence 568999999999999865543221 12344444321 223456666656553
No 15
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.78 E-value=0.0011 Score=58.29 Aligned_cols=44 Identities=25% Similarity=0.269 Sum_probs=36.4
Q ss_pred ccccccchhHHHHHHHhhh----cCCCeEEEEEEcCCCCcHHHHhccC
Q 047923 147 NQLVGRESRVEIIESLLAA----ESKDVYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 147 ~~~vG~d~~~~~~~~~l~~----~~~~~~vi~i~G~gGiGKTTla~~v 190 (190)
.+++|++..++.+.+.|.. -...-+++-++|.+|+||||||+.+
T Consensus 76 ~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~l 123 (644)
T PRK15455 76 EEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERL 123 (644)
T ss_pred hcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHH
Confidence 4689999999999888732 2345689999999999999999864
No 16
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.77 E-value=0.0063 Score=50.17 Aligned_cols=21 Identities=29% Similarity=0.504 Sum_probs=18.5
Q ss_pred CeEEEEEEcCCCCcHHHHhcc
Q 047923 169 DVYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 169 ~~~vi~i~G~gGiGKTTla~~ 189 (190)
...+++++|.+|.||||++..
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~k 133 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGK 133 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHH
Confidence 367999999999999999864
No 17
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.74 E-value=0.0048 Score=49.73 Aligned_cols=20 Identities=30% Similarity=0.400 Sum_probs=17.7
Q ss_pred CeEEEEEEcCCCCcHHHHhc
Q 047923 169 DVYILGIWGVGSIGKTTIAR 188 (190)
Q Consensus 169 ~~~vi~i~G~gGiGKTTla~ 188 (190)
+.+++.++|.+|+||||++.
T Consensus 71 ~~~vi~l~G~~G~GKTTt~a 90 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIA 90 (272)
T ss_pred CCeEEEEECCCCCcHHHHHH
Confidence 46899999999999999875
No 18
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=96.74 E-value=0.0016 Score=58.33 Aligned_cols=43 Identities=26% Similarity=0.344 Sum_probs=33.6
Q ss_pred ccccccccchhHHHHHHHhhhcCCCeEEEEEEcCCCCcHHHHhcc
Q 047923 145 KENQLVGRESRVEIIESLLAAESKDVYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 145 ~~~~~vG~d~~~~~~~~~l~~~~~~~~vi~i~G~gGiGKTTla~~ 189 (190)
...+++|.+..+..+.+.+.. .....+.|+|.+|.||||||+.
T Consensus 152 ~~~~iiGqs~~~~~l~~~ia~--~~~~~vlL~Gp~GtGKTTLAr~ 194 (615)
T TIGR02903 152 AFSEIVGQERAIKALLAKVAS--PFPQHIILYGPPGVGKTTAARL 194 (615)
T ss_pred cHHhceeCcHHHHHHHHHHhc--CCCCeEEEECCCCCCHHHHHHH
Confidence 346789999988887766543 2345689999999999999985
No 19
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=96.74 E-value=0.0011 Score=55.56 Aligned_cols=45 Identities=20% Similarity=0.231 Sum_probs=33.6
Q ss_pred cccccccchhHHHHHHHhhhc--C---------CCeEEEEEEcCCCCcHHHHhccC
Q 047923 146 ENQLVGRESRVEIIESLLAAE--S---------KDVYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 146 ~~~~vG~d~~~~~~~~~l~~~--~---------~~~~vi~i~G~gGiGKTTla~~v 190 (190)
..++.|++..++.+.+.+... . ..-+-+-++|.+|+||||||+++
T Consensus 121 ~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakai 176 (364)
T TIGR01242 121 YEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAV 176 (364)
T ss_pred HHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHH
Confidence 356889999999998776421 1 11345778999999999999864
No 20
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.74 E-value=0.009 Score=51.32 Aligned_cols=20 Identities=30% Similarity=0.285 Sum_probs=17.7
Q ss_pred eEEEEEEcCCCCcHHHHhcc
Q 047923 170 VYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~ 189 (190)
-.++-++|.+|+||||+|..
T Consensus 95 p~vI~lvG~~GsGKTTtaak 114 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAAK 114 (437)
T ss_pred CeEEEEECCCCCcHHHHHHH
Confidence 57889999999999999864
No 21
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=96.72 E-value=0.0047 Score=50.21 Aligned_cols=21 Identities=43% Similarity=0.569 Sum_probs=18.9
Q ss_pred CeEEEEEEcCCCCcHHHHhcc
Q 047923 169 DVYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 169 ~~~vi~i~G~gGiGKTTla~~ 189 (190)
...+|||.|-.|.||||+|+.
T Consensus 61 ~p~IIGIaG~~GSGKSTlar~ 81 (290)
T TIGR00554 61 IPYIISIAGSVAVGKSTTARI 81 (290)
T ss_pred CCEEEEEECCCCCCHHHHHHH
Confidence 467999999999999999974
No 22
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=96.69 E-value=0.0041 Score=55.71 Aligned_cols=44 Identities=30% Similarity=0.333 Sum_probs=36.0
Q ss_pred ccccccchhHHHHHHHhhhc--CC--CeEEEEEEcCCCCcHHHHhccC
Q 047923 147 NQLVGRESRVEIIESLLAAE--SK--DVYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 147 ~~~vG~d~~~~~~~~~l~~~--~~--~~~vi~i~G~gGiGKTTla~~v 190 (190)
.+..|.+.-++.+.+.|.-. .+ +-.++.++|.+|+|||.|++.|
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSI 370 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSI 370 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHH
Confidence 46789999999999988642 22 3579999999999999999864
No 23
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=96.66 E-value=0.0036 Score=53.61 Aligned_cols=64 Identities=20% Similarity=0.336 Sum_probs=50.4
Q ss_pred CCeeEEEeC-CCCCcccchHHHHHHhhcccceEEEecCCCcC--------chhhHHHHHHHHHhhhcCCeeEEeEEee
Q 047923 3 QNIQTFIDD-QLNRGDEISESIAYAIESPAISVIIFSEGYPF--------SRWCLHELVKILKYKKEYAHIVIPGFYR 71 (190)
Q Consensus 3 ~gi~~f~d~-~~~~g~~~~~~l~~ai~~s~~~ivv~S~~y~~--------S~wcl~El~~i~~~~~~~~~~v~PvFy~ 71 (190)
+|+++|||- ++..|+ +.+.|++.|...+-+|.|++||-.. -.|--.||...++|. ..|+|||..
T Consensus 638 ~GyrVFIDVdKL~AGK-FdssLlkni~aAkhFiLVLtP~sLDr~lnD~nCeDWVHKEl~~Afe~~----KNIiPI~D~ 710 (832)
T KOG3678|consen 638 RGYRVFIDVDKLYAGK-FDSSLLKNIQAAKHFILVLTPNSLDRLLNDDNCEDWVHKELKCAFEHQ----KNIIPIFDT 710 (832)
T ss_pred cCceEEEehhhhhccc-ccHHHHHHHHhhheeEEEeCcchHHHHhccccHHHHHHHHHHHHHHhc----CCeeeeecc
Confidence 699999998 888886 4578999999999999999998432 345555666666655 679999854
No 24
>PRK05439 pantothenate kinase; Provisional
Probab=96.63 E-value=0.0066 Score=49.84 Aligned_cols=21 Identities=43% Similarity=0.632 Sum_probs=19.2
Q ss_pred CeEEEEEEcCCCCcHHHHhcc
Q 047923 169 DVYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 169 ~~~vi~i~G~gGiGKTTla~~ 189 (190)
..-+|||-|-+|+||||+|+.
T Consensus 85 ~~~iIgIaG~~gsGKSTla~~ 105 (311)
T PRK05439 85 VPFIIGIAGSVAVGKSTTARL 105 (311)
T ss_pred CCEEEEEECCCCCCHHHHHHH
Confidence 478999999999999999975
No 25
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=96.58 E-value=0.0022 Score=55.05 Aligned_cols=40 Identities=30% Similarity=0.297 Sum_probs=30.8
Q ss_pred ccccccchhHHHHHHHhhhcCCCeEEEEEEcCCCCcHHHHhccC
Q 047923 147 NQLVGRESRVEIIESLLAAESKDVYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 147 ~~~vG~d~~~~~~~~~l~~~~~~~~vi~i~G~gGiGKTTla~~v 190 (190)
.++++.+...+.+...|... ..+-++|++|+||||+|+.+
T Consensus 175 ~d~~i~e~~le~l~~~L~~~----~~iil~GppGtGKT~lA~~l 214 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIK----KNIILQGPPGVGKTFVARRL 214 (459)
T ss_pred hcccCCHHHHHHHHHHHhcC----CCEEEECCCCCCHHHHHHHH
Confidence 45777778888887777643 34667999999999999853
No 26
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.57 E-value=0.0028 Score=58.63 Aligned_cols=41 Identities=27% Similarity=0.415 Sum_probs=32.8
Q ss_pred ccccccchhHHHHHHHhhhcCCCeEEEEEEcCCCCcHHHHhcc
Q 047923 147 NQLVGRESRVEIIESLLAAESKDVYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 147 ~~~vG~d~~~~~~~~~l~~~~~~~~vi~i~G~gGiGKTTla~~ 189 (190)
..++||+..++.+.+.|.... ..-+-++|.+|+|||++|+.
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~--~~n~lL~G~pGvGKTal~~~ 219 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRT--KNNPILIGEPGVGKTAIAEG 219 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccc--cCCeEEECCCCCCHHHHHHH
Confidence 458999999999999987542 12234899999999999975
No 27
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.56 E-value=0.0027 Score=57.98 Aligned_cols=42 Identities=29% Similarity=0.338 Sum_probs=32.9
Q ss_pred ccccccchhHHHHHHHhhhcCCCeEEEEEEcCCCCcHHHHhccC
Q 047923 147 NQLVGRESRVEIIESLLAAESKDVYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 147 ~~~vG~d~~~~~~~~~l~~~~~~~~vi~i~G~gGiGKTTla~~v 190 (190)
+.++||+..++.+...|.... ..-+-++|.+|+||||+|+.+
T Consensus 182 ~~~igr~~ei~~~~~~L~~~~--~~n~lL~G~pG~GKT~l~~~l 223 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRRK--KNNPLLVGEPGVGKTAIAEGL 223 (731)
T ss_pred CcccCcHHHHHHHHHHHhcCC--CCceEEECCCCCCHHHHHHHH
Confidence 468999999999988876542 223458999999999999753
No 28
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.55 E-value=0.0093 Score=54.88 Aligned_cols=44 Identities=25% Similarity=0.262 Sum_probs=35.4
Q ss_pred ccccccchhHHHHHHHhhhc----CCCeEEEEEEcCCCCcHHHHhccC
Q 047923 147 NQLVGRESRVEIIESLLAAE----SKDVYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 147 ~~~vG~d~~~~~~~~~l~~~----~~~~~vi~i~G~gGiGKTTla~~v 190 (190)
.+.+|.+.-++.+.++|... ...-.++.++|.+|+||||+|+.+
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~i 369 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSI 369 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHH
Confidence 46899999999998887642 224568999999999999999853
No 29
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=96.51 E-value=0.0019 Score=58.76 Aligned_cols=43 Identities=28% Similarity=0.434 Sum_probs=30.7
Q ss_pred cccccccchhHH---HHHHHhhhcCCCeEEEEEEcCCCCcHHHHhccC
Q 047923 146 ENQLVGRESRVE---IIESLLAAESKDVYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 146 ~~~~vG~d~~~~---~~~~~l~~~~~~~~vi~i~G~gGiGKTTla~~v 190 (190)
.++++|.+.-+. .+..++.. +....+-+||.+|+||||||+++
T Consensus 27 ldd~vGQe~ii~~~~~L~~~i~~--~~~~slLL~GPpGtGKTTLA~aI 72 (725)
T PRK13341 27 LEEFVGQDHILGEGRLLRRAIKA--DRVGSLILYGPPGVGKTTLARII 72 (725)
T ss_pred HHHhcCcHHHhhhhHHHHHHHhc--CCCceEEEECCCCCCHHHHHHHH
Confidence 356889887664 34444443 34556779999999999999864
No 30
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.49 E-value=0.0032 Score=58.39 Aligned_cols=41 Identities=17% Similarity=0.328 Sum_probs=32.3
Q ss_pred ccccccchhHHHHHHHhhhcCCCeEEEEEEcCCCCcHHHHhcc
Q 047923 147 NQLVGRESRVEIIESLLAAESKDVYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 147 ~~~vG~d~~~~~~~~~l~~~~~~~~vi~i~G~gGiGKTTla~~ 189 (190)
..++||+..++.+...|.... ..-+-++|-+|+||||||+.
T Consensus 187 d~~iGr~~ei~~~i~~l~r~~--~~n~lLvG~pGvGKTal~~~ 227 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRRR--QNNPILTGEAGVGKTAVVEG 227 (852)
T ss_pred CcccCCHHHHHHHHHHHhcCC--cCceeEECCCCCCHHHHHHH
Confidence 568999999999988776542 22344899999999999975
No 31
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=96.47 E-value=0.0025 Score=51.38 Aligned_cols=45 Identities=22% Similarity=0.402 Sum_probs=33.4
Q ss_pred ccccccccchhHHHHHHHhhh---cCCCeEEEEEEcCCCCcHHHHhcc
Q 047923 145 KENQLVGRESRVEIIESLLAA---ESKDVYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 145 ~~~~~vG~d~~~~~~~~~l~~---~~~~~~vi~i~G~gGiGKTTla~~ 189 (190)
...+++|.+.-++.+.=.+.. ..+.+--+=++|.+|.||||||.-
T Consensus 24 ~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~I 71 (332)
T COG2255 24 TLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHI 71 (332)
T ss_pred cHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHH
Confidence 346899999888877655543 223366677899999999999964
No 32
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.45 E-value=0.0044 Score=57.60 Aligned_cols=41 Identities=20% Similarity=0.330 Sum_probs=32.5
Q ss_pred ccccccchhHHHHHHHhhhcCCCeEEEEEEcCCCCcHHHHhcc
Q 047923 147 NQLVGRESRVEIIESLLAAESKDVYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 147 ~~~vG~d~~~~~~~~~l~~~~~~~~vi~i~G~gGiGKTTla~~ 189 (190)
..++||+..++.+...|.... ..-+-++|-+|+||||||+.
T Consensus 178 ~~vigr~~ei~~~i~iL~r~~--~~n~lL~G~pGvGKT~l~~~ 218 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRRT--KNNPVLIGEPGVGKTAIVEG 218 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcCC--cCceEEECCCCCCHHHHHHH
Confidence 468999999999998886542 22344889999999999975
No 33
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=96.42 E-value=0.0026 Score=50.64 Aligned_cols=20 Identities=35% Similarity=0.272 Sum_probs=17.6
Q ss_pred eEEEEEEcCCCCcHHHHhcc
Q 047923 170 VYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~ 189 (190)
-.++.|+|.+|+|||||++.
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~ 62 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRN 62 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHH
Confidence 44788999999999999985
No 34
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=96.40 E-value=0.0037 Score=57.70 Aligned_cols=47 Identities=26% Similarity=0.254 Sum_probs=37.5
Q ss_pred cccccccccchhHHHHHHHhhh---cCCCeEEEEEEcCCCCcHHHHhccC
Q 047923 144 DKENQLVGRESRVEIIESLLAA---ESKDVYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 144 ~~~~~~vG~d~~~~~~~~~l~~---~~~~~~vi~i~G~gGiGKTTla~~v 190 (190)
..++.+.|||.++++|...|.. ++..-.++=|+|.+|.|||++++.|
T Consensus 752 YVPD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~V 801 (1164)
T PTZ00112 752 VVPKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSV 801 (1164)
T ss_pred cCCCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHH
Confidence 4567899999999999888764 2222457779999999999998754
No 35
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=96.39 E-value=0.0024 Score=54.02 Aligned_cols=44 Identities=18% Similarity=0.252 Sum_probs=33.0
Q ss_pred ccccccchhHHHHHHHhhhc--C---------CCeEEEEEEcCCCCcHHHHhccC
Q 047923 147 NQLVGRESRVEIIESLLAAE--S---------KDVYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 147 ~~~vG~d~~~~~~~~~l~~~--~---------~~~~vi~i~G~gGiGKTTla~~v 190 (190)
.++.|++..++++.+.+... . ...+-+-++|.+|.|||+||+++
T Consensus 131 ~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkai 185 (389)
T PRK03992 131 EDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAV 185 (389)
T ss_pred HHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHH
Confidence 46789999999998866421 0 12345778999999999999874
No 36
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=96.38 E-value=0.0018 Score=52.93 Aligned_cols=46 Identities=20% Similarity=0.111 Sum_probs=35.3
Q ss_pred cccccccccchhHHHHHHHhhhcCCCeEEEEEEcCCCCcHHHHhccC
Q 047923 144 DKENQLVGRESRVEIIESLLAAESKDVYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 144 ~~~~~~vG~d~~~~~~~~~l~~~~~~~~vi~i~G~gGiGKTTla~~v 190 (190)
....+++|.+...+.+..++..+. --.++=++|.+|+||||+|+++
T Consensus 18 ~~~~~~~~~~~~~~~l~~~~~~~~-~~~~lll~G~~G~GKT~la~~l 63 (316)
T PHA02544 18 STIDECILPAADKETFKSIVKKGR-IPNMLLHSPSPGTGKTTVAKAL 63 (316)
T ss_pred CcHHHhcCcHHHHHHHHHHHhcCC-CCeEEEeeCcCCCCHHHHHHHH
Confidence 344678999999998888886431 2356667999999999999863
No 37
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=96.28 E-value=0.016 Score=53.40 Aligned_cols=44 Identities=25% Similarity=0.270 Sum_probs=33.4
Q ss_pred ccccccchhHHHHHHHhhhc----CCCeEEEEEEcCCCCcHHHHhccC
Q 047923 147 NQLVGRESRVEIIESLLAAE----SKDVYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 147 ~~~vG~d~~~~~~~~~l~~~----~~~~~vi~i~G~gGiGKTTla~~v 190 (190)
.+++|.+.-++.+.+++... ...-.++-++|.+|+||||+|+++
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~i 367 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSI 367 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHH
Confidence 45789998888888766421 223457889999999999999864
No 38
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=96.27 E-value=0.0044 Score=48.27 Aligned_cols=21 Identities=19% Similarity=0.447 Sum_probs=18.0
Q ss_pred eEEEEEEcCCCCcHHHHhccC
Q 047923 170 VYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~v 190 (190)
.+.+-|+|-.|+|||+||+++
T Consensus 42 ~~~~~l~G~~G~GKT~La~ai 62 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHLLQAL 62 (227)
T ss_pred CCeEEEECCCCCCHHHHHHHH
Confidence 456789999999999999863
No 39
>PLN02318 phosphoribulokinase/uridine kinase
Probab=96.25 E-value=0.0045 Score=54.88 Aligned_cols=31 Identities=26% Similarity=0.428 Sum_probs=24.5
Q ss_pred HHHhhhcCCCeEEEEEEcCCCCcHHHHhccC
Q 047923 160 ESLLAAESKDVYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 160 ~~~l~~~~~~~~vi~i~G~gGiGKTTla~~v 190 (190)
.+++....+++.+|||.|..|.||||||+.+
T Consensus 55 ~qlL~~~~~~riIIGIaGpSGSGKTTLAk~L 85 (656)
T PLN02318 55 CQLLAQKNDGIILVGVAGPSGAGKTVFTEKV 85 (656)
T ss_pred HHHHHhcCCCeEEEEEECCCCCcHHHHHHHH
Confidence 3445445556899999999999999999864
No 40
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=96.23 E-value=0.0082 Score=49.74 Aligned_cols=33 Identities=27% Similarity=0.412 Sum_probs=24.1
Q ss_pred HHHHHHhhhcCCCeEEEEEEcCCCCcHHHHhcc
Q 047923 157 EIIESLLAAESKDVYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 157 ~~~~~~l~~~~~~~~vi~i~G~gGiGKTTla~~ 189 (190)
..+.+.+.....+..+|||.|.+|.|||||+..
T Consensus 43 ~~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~ 75 (332)
T PRK09435 43 QELLDALLPHTGNALRIGITGVPGVGKSTFIEA 75 (332)
T ss_pred HHHHHHHhhcCCCcEEEEEECCCCCCHHHHHHH
Confidence 344444433334578999999999999999864
No 41
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.17 E-value=0.017 Score=48.97 Aligned_cols=20 Identities=30% Similarity=0.411 Sum_probs=18.0
Q ss_pred eEEEEEEcCCCCcHHHHhcc
Q 047923 170 VYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~ 189 (190)
.++++++|.+|+||||++..
T Consensus 241 ~~vI~LVGptGvGKTTTiaK 260 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAK 260 (436)
T ss_pred CcEEEEECCCCCcHHHHHHH
Confidence 57899999999999999864
No 42
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=96.16 E-value=0.072 Score=38.24 Aligned_cols=52 Identities=17% Similarity=0.077 Sum_probs=32.6
Q ss_pred hHHHHHHhhcccceEEEecCCCcCchhhHHHHHHHHHhhhcCCeeEEeEEeecC
Q 047923 20 SESIAYAIESPAISVIIFSEGYPFSRWCLHELVKILKYKKEYAHIVIPGFYRGD 73 (190)
Q Consensus 20 ~~~l~~ai~~s~~~ivv~S~~y~~S~wcl~El~~i~~~~~~~~~~v~PvFy~v~ 73 (190)
.-++.++|+.+++.+.|+.-....+.+.. ++...+.... .+..++-|+=+.|
T Consensus 2 ~~~~~~~i~~aD~vl~ViD~~~p~~~~~~-~l~~~l~~~~-~~k~~iivlNK~D 53 (141)
T cd01857 2 WRQLWRVVERSDIVVQIVDARNPLLFRPP-DLERYVKEVD-PRKKNILLLNKAD 53 (141)
T ss_pred HHHHHHHHhhCCEEEEEEEccCCcccCCH-HHHHHHHhcc-CCCcEEEEEechh
Confidence 35678999999999999987766655522 4444444221 2345555555544
No 43
>PRK14974 cell division protein FtsY; Provisional
Probab=96.15 E-value=0.02 Score=47.54 Aligned_cols=19 Identities=32% Similarity=0.372 Sum_probs=16.8
Q ss_pred eEEEEEEcCCCCcHHHHhc
Q 047923 170 VYILGIWGVGSIGKTTIAR 188 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~ 188 (190)
..++.++|++|+||||++.
T Consensus 140 ~~vi~~~G~~GvGKTTtia 158 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIA 158 (336)
T ss_pred CeEEEEEcCCCCCHHHHHH
Confidence 5799999999999999654
No 44
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.13 E-value=0.03 Score=47.99 Aligned_cols=20 Identities=25% Similarity=0.302 Sum_probs=17.7
Q ss_pred eEEEEEEcCCCCcHHHHhcc
Q 047923 170 VYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~ 189 (190)
-.++.++|.+|+||||+|..
T Consensus 100 ~~vi~lvG~~GvGKTTtaaK 119 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTK 119 (429)
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 57999999999999998754
No 45
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.13 E-value=0.008 Score=55.88 Aligned_cols=41 Identities=20% Similarity=0.340 Sum_probs=32.3
Q ss_pred ccccccchhHHHHHHHhhhcCCCeEEEEEEcCCCCcHHHHhcc
Q 047923 147 NQLVGRESRVEIIESLLAAESKDVYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 147 ~~~vG~d~~~~~~~~~l~~~~~~~~vi~i~G~gGiGKTTla~~ 189 (190)
..++||+..++.+...|.... -.-+-++|-+|+|||+||+.
T Consensus 173 ~~~igr~~ei~~~~~~l~r~~--~~n~lL~G~pGvGKT~l~~~ 213 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRRT--KNNPVLIGEPGVGKTAIVEG 213 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcCC--CCceEEEcCCCCCHHHHHHH
Confidence 458999999999998886542 22234799999999999975
No 46
>CHL00181 cbbX CbbX; Provisional
Probab=96.07 E-value=0.0065 Score=49.35 Aligned_cols=19 Identities=32% Similarity=0.314 Sum_probs=16.4
Q ss_pred EEEEEcCCCCcHHHHhccC
Q 047923 172 ILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 172 vi~i~G~gGiGKTTla~~v 190 (190)
.+-++|.+|.||||+|+++
T Consensus 61 ~ill~G~pGtGKT~lAr~l 79 (287)
T CHL00181 61 HMSFTGSPGTGKTTVALKM 79 (287)
T ss_pred eEEEECCCCCCHHHHHHHH
Confidence 3668999999999999864
No 47
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.00 E-value=0.0063 Score=52.72 Aligned_cols=46 Identities=20% Similarity=0.212 Sum_probs=34.9
Q ss_pred cccccccccchhHHHHHHHhhhcCCCeEEEEEEcCCCCcHHHHhccC
Q 047923 144 DKENQLVGRESRVEIIESLLAAESKDVYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 144 ~~~~~~vG~d~~~~~~~~~l~~~~~~~~vi~i~G~gGiGKTTla~~v 190 (190)
....+++|.+.-+..+..++..+. --..+=++|..|+||||+|+.+
T Consensus 15 ~~f~dvVGQe~iv~~L~~~i~~~r-i~ha~Lf~GP~GtGKTTlAriL 60 (484)
T PRK14956 15 QFFRDVIHQDLAIGALQNALKSGK-IGHAYIFFGPRGVGKTTIARIL 60 (484)
T ss_pred CCHHHHhChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHH
Confidence 344679999988888888776542 1235679999999999999853
No 48
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=95.80 E-value=0.0087 Score=48.52 Aligned_cols=18 Identities=33% Similarity=0.346 Sum_probs=15.5
Q ss_pred EEEEEcCCCCcHHHHhcc
Q 047923 172 ILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 172 vi~i~G~gGiGKTTla~~ 189 (190)
-+-++|.+|.||||+|++
T Consensus 60 ~vll~G~pGTGKT~lA~~ 77 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALR 77 (284)
T ss_pred eEEEEcCCCCCHHHHHHH
Confidence 466899999999999964
No 49
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.75 E-value=0.0091 Score=53.55 Aligned_cols=47 Identities=26% Similarity=0.330 Sum_probs=37.5
Q ss_pred cccccccccchhHHHHHHHhhhcC---CCeEEEEEEcCCCCcHHHHhccC
Q 047923 144 DKENQLVGRESRVEIIESLLAAES---KDVYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 144 ~~~~~~vG~d~~~~~~~~~l~~~~---~~~~vi~i~G~gGiGKTTla~~v 190 (190)
....+++|.+..++++..++.... ...+++.|+|..|.||||+++.+
T Consensus 81 ~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~l 130 (637)
T TIGR00602 81 ETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKIL 130 (637)
T ss_pred CCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHH
Confidence 344679999999999998887532 23578999999999999998753
No 50
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=95.66 E-value=0.01 Score=51.03 Aligned_cols=44 Identities=23% Similarity=0.277 Sum_probs=32.3
Q ss_pred ccccccchhHHHHHHHhhhc--C---------CCeEEEEEEcCCCCcHHHHhccC
Q 047923 147 NQLVGRESRVEIIESLLAAE--S---------KDVYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 147 ~~~vG~d~~~~~~~~~l~~~--~---------~~~~vi~i~G~gGiGKTTla~~v 190 (190)
.++-|.+..++++.+.+... + ..-+-+-++|.+|.|||+||+++
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraI 237 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAV 237 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHH
Confidence 45678999888888766421 1 12345668999999999999874
No 51
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.62 E-value=0.026 Score=48.40 Aligned_cols=20 Identities=25% Similarity=0.293 Sum_probs=17.0
Q ss_pred eEEEEEEcCCCCcHHHHhcc
Q 047923 170 VYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~ 189 (190)
-+++.++|.+|+||||++..
T Consensus 221 ~~~i~~vGptGvGKTTt~~k 240 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAK 240 (424)
T ss_pred CcEEEEECCCCCCHHHHHHH
Confidence 35899999999999998753
No 52
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=95.60 E-value=0.0059 Score=48.75 Aligned_cols=22 Identities=36% Similarity=0.330 Sum_probs=18.2
Q ss_pred CeEEEEEEcCCCCcHHHHhccC
Q 047923 169 DVYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 169 ~~~vi~i~G~gGiGKTTla~~v 190 (190)
...-+-++|.+|.||||+|+++
T Consensus 41 ~~~~vll~GppGtGKTtlA~~i 62 (261)
T TIGR02881 41 QVLHMIFKGNPGTGKTTVARIL 62 (261)
T ss_pred CcceEEEEcCCCCCHHHHHHHH
Confidence 3556778999999999999863
No 53
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=95.59 E-value=0.0061 Score=51.80 Aligned_cols=23 Identities=30% Similarity=0.224 Sum_probs=20.0
Q ss_pred CCeEEEEEEcCCCCcHHHHhccC
Q 047923 168 KDVYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 168 ~~~~vi~i~G~gGiGKTTla~~v 190 (190)
.-++.|+|.|..|.||||||+++
T Consensus 217 ~~~~~IvI~G~~gsGKTTL~~~L 239 (399)
T PRK08099 217 FFVRTVAILGGESSGKSTLVNKL 239 (399)
T ss_pred CCCcEEEEEcCCCCCHHHHHHHH
Confidence 34889999999999999999763
No 54
>PLN02200 adenylate kinase family protein
Probab=95.57 E-value=0.0076 Score=47.49 Aligned_cols=20 Identities=25% Similarity=0.224 Sum_probs=17.8
Q ss_pred eEEEEEEcCCCCcHHHHhcc
Q 047923 170 VYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~ 189 (190)
..++.|.|++|.||||+|+.
T Consensus 43 ~~ii~I~G~PGSGKsT~a~~ 62 (234)
T PLN02200 43 PFITFVLGGPGSGKGTQCEK 62 (234)
T ss_pred CEEEEEECCCCCCHHHHHHH
Confidence 56889999999999999874
No 55
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.55 E-value=0.054 Score=46.32 Aligned_cols=20 Identities=25% Similarity=0.127 Sum_probs=17.6
Q ss_pred eEEEEEEcCCCCcHHHHhcc
Q 047923 170 VYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~ 189 (190)
-.++.++|.+|+||||+|..
T Consensus 223 ~~vi~lvGptGvGKTTtaaK 242 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAK 242 (432)
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 46899999999999999864
No 56
>PLN02348 phosphoribulokinase
Probab=95.50 E-value=0.014 Score=49.36 Aligned_cols=24 Identities=21% Similarity=0.338 Sum_probs=20.7
Q ss_pred CCCeEEEEEEcCCCCcHHHHhccC
Q 047923 167 SKDVYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 167 ~~~~~vi~i~G~gGiGKTTla~~v 190 (190)
.+...+|||-|-.|.||||+|+.+
T Consensus 46 ~~~p~IIGIaG~SGSGKSTfA~~L 69 (395)
T PLN02348 46 DDGTVVIGLAADSGCGKSTFMRRL 69 (395)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHH
Confidence 345789999999999999999853
No 57
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=95.49 E-value=0.014 Score=53.42 Aligned_cols=41 Identities=32% Similarity=0.413 Sum_probs=32.4
Q ss_pred ccccccchhHHHHHHHhhhcCCCeEEEEEEcCCCCcHHHHhcc
Q 047923 147 NQLVGRESRVEIIESLLAAESKDVYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 147 ~~~vG~d~~~~~~~~~l~~~~~~~~vi~i~G~gGiGKTTla~~ 189 (190)
..++||+..++.+.+.|..... - -+-++|-+|+|||+||+.
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~~-~-n~LLvGppGvGKT~lae~ 226 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRRK-N-NPLLVGESGVGKTAIAEG 226 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccCC-C-CeEEECCCCCCHHHHHHH
Confidence 4589999999999998876422 1 123799999999999985
No 58
>PF08937 DUF1863: MTH538 TIR-like domain (DUF1863); InterPro: IPR015032 This protein adopts the flavodoxin fold, that is, five parallel beta-strands and four helical segments. The structure is a three-layer sandwich with alpha-1 and alpha-4 on one side of the beta-sheet, and alpha-2 and alpha-3 on the other side. Probable role in signal transduction as a phosphorylation-independent conformational switch protein []. This domain is similar to the TIR domain [].; PDB: 3HYN_A.
Probab=95.46 E-value=0.026 Score=40.24 Aligned_cols=50 Identities=18% Similarity=0.303 Sum_probs=34.7
Q ss_pred CcccchHHHHHHhhcccceEEEecCCCcCchhhHHHHHHHHHhhhcCCeeEEeE
Q 047923 15 RGDEISESIAYAIESPAISVIIFSEGYPFSRWCLHELVKILKYKKEYAHIVIPG 68 (190)
Q Consensus 15 ~g~~~~~~l~~ai~~s~~~ivv~S~~y~~S~wcl~El~~i~~~~~~~~~~v~Pv 68 (190)
..+.|...|.++|.+|.+.||+.|++-..|+|+--|+...++ .+..|+-|
T Consensus 56 ~~~~ik~~I~~~i~~s~~~IVLig~~T~~s~wV~~EI~~A~~----~~~~Ii~V 105 (130)
T PF08937_consen 56 SSEYIKRKIRERIKNSSVTIVLIGPNTAKSKWVNWEIEYALK----KGKPIIGV 105 (130)
T ss_dssp TTTTHHHHHHHHHHTEEEEEEE--TT----HHHHHHHHHHTT----T---EEEE
T ss_pred hHHHHHHHHHHHHhcCCEEEEEeCCCcccCcHHHHHHHHHHH----CCCCEEEE
Confidence 445788899999999999999999999999999999998776 33455555
No 59
>PLN02796 D-glycerate 3-kinase
Probab=95.45 E-value=0.0079 Score=49.98 Aligned_cols=22 Identities=32% Similarity=0.329 Sum_probs=19.1
Q ss_pred CeEEEEEEcCCCCcHHHHhccC
Q 047923 169 DVYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 169 ~~~vi~i~G~gGiGKTTla~~v 190 (190)
..-++||.|..|.||||||+.+
T Consensus 99 ~pliIGI~G~sGSGKSTLa~~L 120 (347)
T PLN02796 99 PPLVIGISAPQGCGKTTLVFAL 120 (347)
T ss_pred CCEEEEEECCCCCcHHHHHHHH
Confidence 3578999999999999999753
No 60
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=95.42 E-value=0.012 Score=52.85 Aligned_cols=44 Identities=32% Similarity=0.316 Sum_probs=36.2
Q ss_pred ccccccchhHHHHHHHhhh----cCCCeEEEEEEcCCCCcHHHHhccC
Q 047923 147 NQLVGRESRVEIIESLLAA----ESKDVYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 147 ~~~vG~d~~~~~~~~~l~~----~~~~~~vi~i~G~gGiGKTTla~~v 190 (190)
++..|++.-++.+.+.+.- ++.+-.++..+|.+|+|||.+|+.|
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSI 458 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSI 458 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHH
Confidence 4668999999999988763 3345689999999999999999864
No 61
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=95.37 E-value=0.015 Score=49.43 Aligned_cols=44 Identities=18% Similarity=0.201 Sum_probs=32.7
Q ss_pred ccccccchhHHHHHHHhhh--c---------CCCeEEEEEEcCCCCcHHHHhccC
Q 047923 147 NQLVGRESRVEIIESLLAA--E---------SKDVYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 147 ~~~vG~d~~~~~~~~~l~~--~---------~~~~~vi~i~G~gGiGKTTla~~v 190 (190)
.++.|.+..++++.+.+.. . -..-+-+-++|.+|.|||+||+++
T Consensus 145 ~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkal 199 (398)
T PTZ00454 145 SDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAV 199 (398)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHH
Confidence 5678999888888776542 1 112456779999999999999864
No 62
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=95.36 E-value=0.015 Score=51.94 Aligned_cols=46 Identities=26% Similarity=0.343 Sum_probs=35.7
Q ss_pred cccccccccchhHHHHHHHhhhcCCCeEEEEEEcCCCCcHHHHhccC
Q 047923 144 DKENQLVGRESRVEIIESLLAAESKDVYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 144 ~~~~~~vG~d~~~~~~~~~l~~~~~~~~vi~i~G~gGiGKTTla~~v 190 (190)
....+++|.+..++.+.+.+..+. -..-+=++|..|+||||+|+.+
T Consensus 21 ~~f~dliGq~~~v~~L~~~~~~gr-i~ha~L~~Gp~GvGKTt~Ar~l 66 (598)
T PRK09111 21 QTFDDLIGQEAMVRTLTNAFETGR-IAQAFMLTGVRGVGKTTTARIL 66 (598)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHH
Confidence 345689999999999988886542 1335668999999999999853
No 63
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=95.36 E-value=0.0072 Score=51.07 Aligned_cols=20 Identities=20% Similarity=-0.044 Sum_probs=16.8
Q ss_pred EEEEEEcCCCCcHHHHhccC
Q 047923 171 YILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~~v 190 (190)
.-.+|+|.+|+||||||+.|
T Consensus 170 QR~lIvgppGvGKTTLaK~I 189 (416)
T PRK09376 170 QRGLIVAPPKAGKTVLLQNI 189 (416)
T ss_pred ceEEEeCCCCCChhHHHHHH
Confidence 34678999999999999864
No 64
>PRK06620 hypothetical protein; Validated
Probab=95.35 E-value=0.0087 Score=46.51 Aligned_cols=19 Identities=37% Similarity=0.455 Sum_probs=17.2
Q ss_pred EEEEEEcCCCCcHHHHhcc
Q 047923 171 YILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~~ 189 (190)
+.+-|||..|+|||+|+++
T Consensus 45 ~~l~l~Gp~G~GKThLl~a 63 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKI 63 (214)
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 5688999999999999985
No 65
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.29 E-value=0.072 Score=45.75 Aligned_cols=19 Identities=26% Similarity=0.307 Sum_probs=16.9
Q ss_pred eEEEEEEcCCCCcHHHHhc
Q 047923 170 VYILGIWGVGSIGKTTIAR 188 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~ 188 (190)
..++-++|.+|+||||+|.
T Consensus 99 p~vi~~vG~~GsGKTTtaa 117 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCG 117 (428)
T ss_pred CEEEEEECCCCCcHHHHHH
Confidence 5689999999999999964
No 66
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=95.28 E-value=0.016 Score=50.70 Aligned_cols=46 Identities=24% Similarity=0.236 Sum_probs=34.5
Q ss_pred cccccccccchhHHHHHHHhhhcCCCeEEEEEEcCCCCcHHHHhccC
Q 047923 144 DKENQLVGRESRVEIIESLLAAESKDVYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 144 ~~~~~~vG~d~~~~~~~~~l~~~~~~~~vi~i~G~gGiGKTTla~~v 190 (190)
....+++|.+.-+..+...+..+. -...+=++|..|+||||+|+.+
T Consensus 18 ~~f~dliGq~~vv~~L~~ai~~~r-i~~a~Lf~Gp~G~GKTT~Aril 63 (507)
T PRK06645 18 SNFAELQGQEVLVKVLSYTILNDR-LAGGYLLTGIRGVGKTTSARII 63 (507)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHH
Confidence 344679999998888877665432 1345678999999999999853
No 67
>PRK09087 hypothetical protein; Validated
Probab=95.26 E-value=0.019 Score=44.97 Aligned_cols=20 Identities=25% Similarity=0.218 Sum_probs=17.5
Q ss_pred eEEEEEEcCCCCcHHHHhcc
Q 047923 170 VYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~ 189 (190)
-+.+.|||..|+|||+|+++
T Consensus 44 ~~~l~l~G~~GsGKThLl~~ 63 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASI 63 (226)
T ss_pred CCeEEEECCCCCCHHHHHHH
Confidence 45689999999999999985
No 68
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=95.25 E-value=0.015 Score=53.23 Aligned_cols=45 Identities=20% Similarity=0.220 Sum_probs=33.2
Q ss_pred cccccccchhHHHHHHHhhhc--------C---CCeEEEEEEcCCCCcHHHHhccC
Q 047923 146 ENQLVGRESRVEIIESLLAAE--------S---KDVYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 146 ~~~~vG~d~~~~~~~~~l~~~--------~---~~~~vi~i~G~gGiGKTTla~~v 190 (190)
.+++.|.+..++.+.+++... . ..-+-+-++|.+|.||||||+++
T Consensus 177 ~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~larai 232 (733)
T TIGR01243 177 YEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAV 232 (733)
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHH
Confidence 356889999888887776421 1 12345779999999999999864
No 69
>PRK10865 protein disaggregation chaperone; Provisional
Probab=95.25 E-value=0.023 Score=52.88 Aligned_cols=45 Identities=18% Similarity=0.361 Sum_probs=34.5
Q ss_pred cccccccchhHHHHHHHhhhc------CCC-eEEEEEEcCCCCcHHHHhccC
Q 047923 146 ENQLVGRESRVEIIESLLAAE------SKD-VYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 146 ~~~~vG~d~~~~~~~~~l~~~------~~~-~~vi~i~G~gGiGKTTla~~v 190 (190)
...++|.+.-++.+...+... .+. ...+-++|..|+||||||+++
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aL 618 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKAL 618 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHH
Confidence 457889999988887776532 121 457889999999999999864
No 70
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=95.21 E-value=0.027 Score=50.03 Aligned_cols=43 Identities=21% Similarity=0.229 Sum_probs=28.1
Q ss_pred cccccchhHHHHHHHhhhcCCCeEEEEEEcCCCCcHHHHhccC
Q 047923 148 QLVGRESRVEIIESLLAAESKDVYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 148 ~~vG~d~~~~~~~~~l~~~~~~~~vi~i~G~gGiGKTTla~~v 190 (190)
..+-+.+-.+.+.++.......-.+|-+.|+.|.||||+|+++
T Consensus 370 ~~f~rpeV~~iL~~~~~~r~~~g~~Ivl~Gl~GSGKSTia~~L 412 (568)
T PRK05537 370 EWFSFPEVVAELRRTYPPRHKQGFTVFFTGLSGAGKSTIAKAL 412 (568)
T ss_pred hhhcHHHHHHHHHHHhccccCCCeEEEEECCCCChHHHHHHHH
Confidence 3445554444444444333334457889999999999999864
No 71
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.21 E-value=0.011 Score=47.89 Aligned_cols=20 Identities=25% Similarity=0.310 Sum_probs=17.7
Q ss_pred eEEEEEEcCCCCcHHHHhcc
Q 047923 170 VYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~ 189 (190)
-++++++|.+|+||||++..
T Consensus 194 ~~vi~~vGptGvGKTTt~~k 213 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAK 213 (282)
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 46999999999999999864
No 72
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=95.08 E-value=0.026 Score=45.87 Aligned_cols=21 Identities=24% Similarity=0.308 Sum_probs=19.0
Q ss_pred CeEEEEEEcCCCCcHHHHhcc
Q 047923 169 DVYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 169 ~~~vi~i~G~gGiGKTTla~~ 189 (190)
++.+++|.|.+|.|||||...
T Consensus 103 ~~~~v~l~G~pGsGKTTLl~~ 123 (290)
T PRK10463 103 KQLVLNLVSSPGSGKTTLLTE 123 (290)
T ss_pred CCeEEEEECCCCCCHHHHHHH
Confidence 589999999999999999853
No 73
>CHL00176 ftsH cell division protein; Validated
Probab=95.08 E-value=0.014 Score=52.55 Aligned_cols=45 Identities=24% Similarity=0.161 Sum_probs=32.0
Q ss_pred cccccccchhHHHHHHHhhhcC----------CCeEEEEEEcCCCCcHHHHhccC
Q 047923 146 ENQLVGRESRVEIIESLLAAES----------KDVYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 146 ~~~~vG~d~~~~~~~~~l~~~~----------~~~~vi~i~G~gGiGKTTla~~v 190 (190)
..++.|.+..++++.+++..-. ..-+-+-++|.+|.|||+||+++
T Consensus 182 f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAral 236 (638)
T CHL00176 182 FRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAI 236 (638)
T ss_pred HHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHH
Confidence 3568899888887776653211 11335778999999999999974
No 74
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=95.07 E-value=0.021 Score=46.81 Aligned_cols=22 Identities=23% Similarity=0.348 Sum_probs=18.8
Q ss_pred CeEEEEEEcCCCCcHHHHhccC
Q 047923 169 DVYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 169 ~~~vi~i~G~gGiGKTTla~~v 190 (190)
.-..|.+.||.|.||||+|+.+
T Consensus 132 ~~~~I~l~G~~GsGKStvg~~L 153 (309)
T PRK08154 132 RRRRIALIGLRGAGKSTLGRML 153 (309)
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 3567999999999999999853
No 75
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=95.05 E-value=0.017 Score=50.41 Aligned_cols=45 Identities=20% Similarity=0.146 Sum_probs=30.4
Q ss_pred cccccccchhHHHHHHHhhh----------cCCCeEEEEEEcCCCCcHHHHhccC
Q 047923 146 ENQLVGRESRVEIIESLLAA----------ESKDVYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 146 ~~~~vG~d~~~~~~~~~l~~----------~~~~~~vi~i~G~gGiGKTTla~~v 190 (190)
.+++.|.+..++++.+++.. +...-+-+-++|.+|.|||+||+++
T Consensus 54 ~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~al 108 (495)
T TIGR01241 54 FKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAV 108 (495)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHH
Confidence 35678888777766655431 0111234668999999999999864
No 76
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=94.94 E-value=0.014 Score=49.81 Aligned_cols=21 Identities=29% Similarity=0.308 Sum_probs=18.7
Q ss_pred eEEEEEEcCCCCcHHHHhccC
Q 047923 170 VYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~v 190 (190)
--+|||.|..|.|||||++.+
T Consensus 212 PlIIGIsG~qGSGKSTLa~~L 232 (460)
T PLN03046 212 PLVIGFSAPQGCGKTTLVFAL 232 (460)
T ss_pred CEEEEEECCCCCCHHHHHHHH
Confidence 569999999999999999753
No 77
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=94.87 E-value=0.03 Score=45.54 Aligned_cols=32 Identities=25% Similarity=0.382 Sum_probs=24.7
Q ss_pred HHHHHHhhhcCCCeEEEEEEcCCCCcHHHHhc
Q 047923 157 EIIESLLAAESKDVYILGIWGVGSIGKTTIAR 188 (190)
Q Consensus 157 ~~~~~~l~~~~~~~~vi~i~G~gGiGKTTla~ 188 (190)
.++...+........+|||-|.||.||+||.-
T Consensus 38 ~~ll~~l~p~tG~a~viGITG~PGaGKSTli~ 69 (323)
T COG1703 38 RELLRALYPRTGNAHVIGITGVPGAGKSTLIE 69 (323)
T ss_pred HHHHHHHhhcCCCCcEEEecCCCCCchHHHHH
Confidence 44555555555568899999999999999964
No 78
>PRK09183 transposase/IS protein; Provisional
Probab=94.86 E-value=0.014 Score=46.61 Aligned_cols=20 Identities=30% Similarity=0.318 Sum_probs=17.1
Q ss_pred EEEEEEcCCCCcHHHHhccC
Q 047923 171 YILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~~v 190 (190)
..+.|+|..|+|||+||.++
T Consensus 103 ~~v~l~Gp~GtGKThLa~al 122 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIAL 122 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHH
Confidence 45779999999999999863
No 79
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=94.83 E-value=0.035 Score=46.23 Aligned_cols=43 Identities=21% Similarity=0.319 Sum_probs=36.4
Q ss_pred ccccccchhHHHHHHHhhhcC----CCeEEEEEEcCCCCcHHHHhcc
Q 047923 147 NQLVGRESRVEIIESLLAAES----KDVYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 147 ~~~vG~d~~~~~~~~~l~~~~----~~~~vi~i~G~gGiGKTTla~~ 189 (190)
..++|++..++.+.+.+.... ..-+++=+.|..|.||||||..
T Consensus 61 ~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~ 107 (358)
T PF08298_consen 61 DEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAEL 107 (358)
T ss_pred ccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHH
Confidence 479999999999999887532 2378999999999999999975
No 80
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=94.83 E-value=0.028 Score=49.55 Aligned_cols=43 Identities=23% Similarity=0.413 Sum_probs=32.0
Q ss_pred cccccccchhHHHHHHHhhhcCCCeEEEEEEcCCCCcHHHHhccC
Q 047923 146 ENQLVGRESRVEIIESLLAAESKDVYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 146 ~~~~vG~d~~~~~~~~~l~~~~~~~~vi~i~G~gGiGKTTla~~v 190 (190)
.++++|.+..++.+...+.... ... +=|+|-.|+||||+|+++
T Consensus 64 f~~iiGqs~~i~~l~~al~~~~-~~~-vLi~Ge~GtGKt~lAr~i 106 (531)
T TIGR02902 64 FDEIIGQEEGIKALKAALCGPN-PQH-VIIYGPPGVGKTAAARLV 106 (531)
T ss_pred HHHeeCcHHHHHHHHHHHhCCC-Cce-EEEECCCCCCHHHHHHHH
Confidence 3579999988888876654322 233 458999999999999863
No 81
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=94.80 E-value=0.024 Score=49.67 Aligned_cols=44 Identities=27% Similarity=0.294 Sum_probs=31.6
Q ss_pred ccccccchhHHHHHHHhhhc-----------CCCeEEEEEEcCCCCcHHHHhccC
Q 047923 147 NQLVGRESRVEIIESLLAAE-----------SKDVYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 147 ~~~vG~d~~~~~~~~~l~~~-----------~~~~~vi~i~G~gGiGKTTla~~v 190 (190)
.++.|.+..++.+.+.+... -...+-+-++|.+|.|||++|+++
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAl 236 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAV 236 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHH
Confidence 56778998888887765321 112344678999999999999874
No 82
>PRK08084 DNA replication initiation factor; Provisional
Probab=94.79 E-value=0.015 Score=45.75 Aligned_cols=20 Identities=15% Similarity=0.375 Sum_probs=17.7
Q ss_pred eEEEEEEcCCCCcHHHHhcc
Q 047923 170 VYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~ 189 (190)
.+.+-|||..|+|||+|+++
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a 64 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHA 64 (235)
T ss_pred CCeEEEECCCCCCHHHHHHH
Confidence 45788999999999999975
No 83
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=94.76 E-value=0.016 Score=50.72 Aligned_cols=20 Identities=40% Similarity=0.519 Sum_probs=18.1
Q ss_pred EEEEEEcCCCCcHHHHhccC
Q 047923 171 YILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~~v 190 (190)
.++||+|-.|.||||||+.+
T Consensus 318 E~lglVGeSGsGKSTlar~i 337 (539)
T COG1123 318 ETLGLVGESGSGKSTLARIL 337 (539)
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 58999999999999999864
No 84
>PRK10867 signal recognition particle protein; Provisional
Probab=94.74 E-value=0.19 Score=43.25 Aligned_cols=19 Identities=32% Similarity=0.373 Sum_probs=16.6
Q ss_pred eEEEEEEcCCCCcHHHHhc
Q 047923 170 VYILGIWGVGSIGKTTIAR 188 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~ 188 (190)
-.++-++|.+|+||||+|.
T Consensus 100 p~vI~~vG~~GsGKTTtaa 118 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAG 118 (433)
T ss_pred CEEEEEECCCCCcHHHHHH
Confidence 5789999999999999664
No 85
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=94.72 E-value=0.036 Score=46.58 Aligned_cols=47 Identities=23% Similarity=0.272 Sum_probs=35.0
Q ss_pred cccccccccchhHHHHHHHhhhc-CCC-eEEEEEEcCCCCcHHHHhccC
Q 047923 144 DKENQLVGRESRVEIIESLLAAE-SKD-VYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 144 ~~~~~~vG~d~~~~~~~~~l~~~-~~~-~~vi~i~G~gGiGKTTla~~v 190 (190)
..+..+.+||++.+++...|..- .+. -.-+-|+|-.|.|||+.++.|
T Consensus 14 ~iP~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v 62 (366)
T COG1474 14 YIPEELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFV 62 (366)
T ss_pred CCcccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHH
Confidence 44556999999999998887642 111 222788999999999998753
No 86
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=94.62 E-value=0.06 Score=49.33 Aligned_cols=44 Identities=18% Similarity=0.305 Sum_probs=33.8
Q ss_pred ccccccchhHHHHHHHhhhc------CCC-eEEEEEEcCCCCcHHHHhccC
Q 047923 147 NQLVGRESRVEIIESLLAAE------SKD-VYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 147 ~~~vG~d~~~~~~~~~l~~~------~~~-~~vi~i~G~gGiGKTTla~~v 190 (190)
..++|.+.-++.+.+.+... .+. ..++-++|..|+|||+||+++
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~l 504 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQL 504 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHH
Confidence 56889999889888776632 112 446779999999999999864
No 87
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=94.61 E-value=0.027 Score=44.59 Aligned_cols=47 Identities=19% Similarity=0.322 Sum_probs=33.0
Q ss_pred cccccccccchhHHHHHHHhhh--cCCCeEEEEEEcCCCCcHHHHhccC
Q 047923 144 DKENQLVGRESRVEIIESLLAA--ESKDVYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 144 ~~~~~~vG~d~~~~~~~~~l~~--~~~~~~vi~i~G~gGiGKTTla~~v 190 (190)
...++++|.|..++.+.+-... ......-+=+||..|.|||+|++++
T Consensus 24 ~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkal 72 (249)
T PF05673_consen 24 IRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKAL 72 (249)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHH
Confidence 3446799999999988653321 1112444557999999999999864
No 88
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=94.58 E-value=0.02 Score=44.91 Aligned_cols=21 Identities=33% Similarity=0.355 Sum_probs=18.2
Q ss_pred eEEEEEEcCCCCcHHHHhccC
Q 047923 170 VYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~v 190 (190)
=.+++|.|..|.|||||++.+
T Consensus 47 Ge~~~i~G~NGsGKSTLl~~i 67 (236)
T cd03267 47 GEIVGFIGPNGAGKTTTLKIL 67 (236)
T ss_pred CCEEEEECCCCCCHHHHHHHH
Confidence 358999999999999999853
No 89
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=94.56 E-value=0.022 Score=44.36 Aligned_cols=21 Identities=29% Similarity=0.359 Sum_probs=18.1
Q ss_pred eEEEEEEcCCCCcHHHHhccC
Q 047923 170 VYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~v 190 (190)
=.+++|.|..|.|||||++.+
T Consensus 48 Ge~~~i~G~nGsGKSTLl~~l 68 (224)
T cd03220 48 GERIGLIGRNGAGKSTLLRLL 68 (224)
T ss_pred CCEEEEECCCCCCHHHHHHHH
Confidence 357999999999999999853
No 90
>PRK06526 transposase; Provisional
Probab=94.52 E-value=0.018 Score=45.97 Aligned_cols=20 Identities=25% Similarity=0.145 Sum_probs=17.1
Q ss_pred EEEEEEcCCCCcHHHHhccC
Q 047923 171 YILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~~v 190 (190)
.-+-++|.+|.|||+||.++
T Consensus 99 ~nlll~Gp~GtGKThLa~al 118 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGL 118 (254)
T ss_pred ceEEEEeCCCCchHHHHHHH
Confidence 45789999999999999863
No 91
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=94.52 E-value=0.021 Score=45.83 Aligned_cols=21 Identities=24% Similarity=0.267 Sum_probs=18.3
Q ss_pred eEEEEEEcCCCCcHHHHhccC
Q 047923 170 VYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~v 190 (190)
=.+++|.|..|.|||||++.+
T Consensus 50 Ge~~~I~G~nGsGKSTLl~~i 70 (271)
T PRK14238 50 NEVTAIIGPSGCGKSTYIKTL 70 (271)
T ss_pred CCEEEEECCCCCCHHHHHHHH
Confidence 358999999999999999853
No 92
>PLN02165 adenylate isopentenyltransferase
Probab=94.50 E-value=0.021 Score=47.31 Aligned_cols=20 Identities=20% Similarity=0.277 Sum_probs=17.7
Q ss_pred eEEEEEEcCCCCcHHHHhcc
Q 047923 170 VYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~ 189 (190)
-.++.|+|+.|.||||||..
T Consensus 43 g~iivIiGPTGSGKStLA~~ 62 (334)
T PLN02165 43 DKVVVIMGATGSGKSRLSVD 62 (334)
T ss_pred CCEEEEECCCCCcHHHHHHH
Confidence 45899999999999999974
No 93
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=94.50 E-value=0.021 Score=48.00 Aligned_cols=21 Identities=38% Similarity=0.578 Sum_probs=19.2
Q ss_pred eEEEEEEcCCCCcHHHHhccC
Q 047923 170 VYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~v 190 (190)
-+.++|||.+|.|||.+|+++
T Consensus 148 PlgllL~GPPGcGKTllArai 168 (413)
T PLN00020 148 PLILGIWGGKGQGKSFQCELV 168 (413)
T ss_pred CeEEEeeCCCCCCHHHHHHHH
Confidence 689999999999999999864
No 94
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.48 E-value=0.022 Score=45.61 Aligned_cols=21 Identities=24% Similarity=0.322 Sum_probs=18.1
Q ss_pred eEEEEEEcCCCCcHHHHhccC
Q 047923 170 VYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~v 190 (190)
=.+++|.|..|.|||||.+.+
T Consensus 47 Ge~~~i~G~nGsGKSTLl~~l 67 (268)
T PRK14248 47 HAVTALIGPSGCGKSTFLRSI 67 (268)
T ss_pred CCEEEEECCCCCCHHHHHHHH
Confidence 357999999999999998753
No 95
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=94.42 E-value=0.04 Score=47.05 Aligned_cols=20 Identities=25% Similarity=0.207 Sum_probs=17.0
Q ss_pred EEEEEEcCCCCcHHHHhccC
Q 047923 171 YILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~~v 190 (190)
.-+-++|..|+||||||+++
T Consensus 109 ~~iLl~Gp~GtGKT~lAr~l 128 (412)
T PRK05342 109 SNILLIGPTGSGKTLLAQTL 128 (412)
T ss_pred ceEEEEcCCCCCHHHHHHHH
Confidence 45778999999999999863
No 96
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.41 E-value=0.074 Score=45.10 Aligned_cols=20 Identities=25% Similarity=0.283 Sum_probs=17.4
Q ss_pred eEEEEEEcCCCCcHHHHhcc
Q 047923 170 VYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~ 189 (190)
-+++.++|..|+||||.+..
T Consensus 174 ~~vi~lvGptGvGKTTT~aK 193 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAK 193 (388)
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 46899999999999998753
No 97
>PRK08727 hypothetical protein; Validated
Probab=94.38 E-value=0.053 Score=42.57 Aligned_cols=20 Identities=35% Similarity=0.242 Sum_probs=17.5
Q ss_pred EEEEEEcCCCCcHHHHhccC
Q 047923 171 YILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~~v 190 (190)
..+-|+|..|.|||+|++++
T Consensus 42 ~~l~l~G~~G~GKThL~~a~ 61 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALAL 61 (233)
T ss_pred CeEEEECCCCCCHHHHHHHH
Confidence 45899999999999999863
No 98
>PRK12289 GTPase RsgA; Reviewed
Probab=94.29 E-value=0.28 Score=41.12 Aligned_cols=30 Identities=13% Similarity=0.395 Sum_probs=20.7
Q ss_pred HhhcccceEEEecCCCc-CchhhHHHHHHHH
Q 047923 26 AIESPAISVIIFSEGYP-FSRWCLHELVKIL 55 (190)
Q Consensus 26 ai~~s~~~ivv~S~~y~-~S~wcl~El~~i~ 55 (190)
++.+++..++|++-.=. .+.|-++++....
T Consensus 86 ~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a 116 (352)
T PRK12289 86 PVANADQILLVFALAEPPLDPWQLSRFLVKA 116 (352)
T ss_pred hhhcCCEEEEEEECCCCCCCHHHHHHHHHHH
Confidence 58889999999996523 2566667665544
No 99
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.24 E-value=0.026 Score=45.21 Aligned_cols=21 Identities=33% Similarity=0.397 Sum_probs=18.2
Q ss_pred eEEEEEEcCCCCcHHHHhccC
Q 047923 170 VYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~v 190 (190)
-.+++|.|..|.|||||.+.+
T Consensus 50 Ge~~~l~G~nGsGKSTLl~~L 70 (269)
T cd03294 50 GEIFVIMGLSGSGKSTLLRCI 70 (269)
T ss_pred CCEEEEECCCCCCHHHHHHHH
Confidence 458999999999999998753
No 100
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.23 E-value=0.026 Score=46.52 Aligned_cols=20 Identities=25% Similarity=0.395 Sum_probs=18.0
Q ss_pred EEEEEEcCCCCcHHHHhccC
Q 047923 171 YILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~~v 190 (190)
|+|=++|.+|.|||+|+|++
T Consensus 178 RliLlhGPPGTGKTSLCKaL 197 (423)
T KOG0744|consen 178 RLILLHGPPGTGKTSLCKAL 197 (423)
T ss_pred eEEEEeCCCCCChhHHHHHH
Confidence 78889999999999999863
No 101
>PRK12377 putative replication protein; Provisional
Probab=94.20 E-value=0.037 Score=44.03 Aligned_cols=21 Identities=24% Similarity=0.145 Sum_probs=18.0
Q ss_pred eEEEEEEcCCCCcHHHHhccC
Q 047923 170 VYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~v 190 (190)
...+-++|-.|+|||+||.++
T Consensus 101 ~~~l~l~G~~GtGKThLa~AI 121 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAI 121 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHH
Confidence 356889999999999999864
No 102
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=94.18 E-value=0.03 Score=44.22 Aligned_cols=43 Identities=28% Similarity=0.253 Sum_probs=30.7
Q ss_pred cccccccccchhHHHHHHHhhhcCCCeEEEEEEcCCCCcHHHHhc
Q 047923 144 DKENQLVGRESRVEIIESLLAAESKDVYILGIWGVGSIGKTTIAR 188 (190)
Q Consensus 144 ~~~~~~vG~d~~~~~~~~~l~~~~~~~~vi~i~G~gGiGKTTla~ 188 (190)
..-.++||-+.-++.+.-.... .++.-+-|-||+|+||||-+.
T Consensus 24 ~~l~dIVGNe~tv~rl~via~~--gnmP~liisGpPG~GKTTsi~ 66 (333)
T KOG0991|consen 24 SVLQDIVGNEDTVERLSVIAKE--GNMPNLIISGPPGTGKTTSIL 66 (333)
T ss_pred hHHHHhhCCHHHHHHHHHHHHc--CCCCceEeeCCCCCchhhHHH
Confidence 3446789988777666543333 247778899999999999654
No 103
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=94.14 E-value=0.026 Score=46.80 Aligned_cols=21 Identities=38% Similarity=0.294 Sum_probs=18.4
Q ss_pred eEEEEEEcCCCCcHHHHhccC
Q 047923 170 VYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~v 190 (190)
=.+++|+|-.|.|||||++++
T Consensus 42 Ge~~~ivG~sGsGKSTL~~~l 62 (330)
T PRK09473 42 GETLGIVGESGSGKSQTAFAL 62 (330)
T ss_pred CCEEEEECCCCchHHHHHHHH
Confidence 457999999999999999864
No 104
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=94.14 E-value=0.028 Score=46.55 Aligned_cols=20 Identities=35% Similarity=0.438 Sum_probs=17.9
Q ss_pred EEEEEEcCCCCcHHHHhccC
Q 047923 171 YILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~~v 190 (190)
.+++|+|-.|.|||||++.+
T Consensus 42 e~~~IvG~sGsGKSTLl~~l 61 (327)
T PRK11308 42 KTLAVVGESGCGKSTLARLL 61 (327)
T ss_pred CEEEEECCCCCcHHHHHHHH
Confidence 57999999999999999864
No 105
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=94.14 E-value=0.027 Score=48.37 Aligned_cols=20 Identities=40% Similarity=0.614 Sum_probs=18.2
Q ss_pred eEEEEEEcCCCCcHHHHhcc
Q 047923 170 VYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~ 189 (190)
-.++|+.|..|+||||+++.
T Consensus 367 gEvigilGpNgiGKTTFvk~ 386 (591)
T COG1245 367 GEVIGILGPNGIGKTTFVKL 386 (591)
T ss_pred ceEEEEECCCCcchHHHHHH
Confidence 46999999999999999975
No 106
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=94.13 E-value=0.031 Score=44.84 Aligned_cols=21 Identities=24% Similarity=0.472 Sum_probs=18.0
Q ss_pred eEEEEEEcCCCCcHHHHhccC
Q 047923 170 VYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~v 190 (190)
=.+++|.|..|.|||||.+.+
T Consensus 50 Ge~~~liG~NGsGKSTLlk~L 70 (264)
T PRK13546 50 GDVIGLVGINGSGKSTLSNII 70 (264)
T ss_pred CCEEEEECCCCCCHHHHHHHH
Confidence 357899999999999999853
No 107
>PRK07952 DNA replication protein DnaC; Validated
Probab=94.12 E-value=0.05 Score=43.17 Aligned_cols=21 Identities=24% Similarity=0.186 Sum_probs=17.7
Q ss_pred eEEEEEEcCCCCcHHHHhccC
Q 047923 170 VYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~v 190 (190)
...+-++|-+|.|||+||.++
T Consensus 99 ~~~~~l~G~~GtGKThLa~ai 119 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAI 119 (244)
T ss_pred CceEEEECCCCCCHHHHHHHH
Confidence 446789999999999999864
No 108
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=94.11 E-value=0.029 Score=42.71 Aligned_cols=22 Identities=23% Similarity=0.359 Sum_probs=18.9
Q ss_pred CCeEEEEEEcCCCCcHHHHhcc
Q 047923 168 KDVYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 168 ~~~~vi~i~G~gGiGKTTla~~ 189 (190)
+....++|.|.+|+|||||.+.
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~ 60 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNA 60 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHH
Confidence 4567899999999999999864
No 109
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=94.11 E-value=0.66 Score=34.37 Aligned_cols=28 Identities=11% Similarity=0.141 Sum_probs=22.6
Q ss_pred cchHHHHHHhhcccceEEEecCCCcCch
Q 047923 18 EISESIAYAIESPAISVIIFSEGYPFSR 45 (190)
Q Consensus 18 ~~~~~l~~ai~~s~~~ivv~S~~y~~S~ 45 (190)
.+..++.++++++++.+.|+..+...+.
T Consensus 8 ~~~~~~~~~i~~aD~il~v~D~~~~~~~ 35 (171)
T cd01856 8 KALRQIKEKLKLVDLVIEVRDARIPLSS 35 (171)
T ss_pred HHHHHHHHHHhhCCEEEEEeeccCccCc
Confidence 4567899999999999999987765443
No 110
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.06 E-value=0.032 Score=44.88 Aligned_cols=21 Identities=29% Similarity=0.393 Sum_probs=18.2
Q ss_pred eEEEEEEcCCCCcHHHHhccC
Q 047923 170 VYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~v 190 (190)
=.+++|.|..|.|||||++.+
T Consensus 46 Ge~~~IiG~nGsGKSTLl~~l 66 (274)
T PRK14265 46 KKIIAFIGPSGCGKSTLLRCF 66 (274)
T ss_pred CCEEEEECCCCCCHHHHHHHH
Confidence 357999999999999999853
No 111
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=94.06 E-value=0.059 Score=45.08 Aligned_cols=45 Identities=22% Similarity=0.213 Sum_probs=34.4
Q ss_pred cccccccccchhHHHHHHHhhhcCCCeEEEEEEcCCCCcHHHHhcc
Q 047923 144 DKENQLVGRESRVEIIESLLAAESKDVYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 144 ~~~~~~vG~d~~~~~~~~~l~~~~~~~~vi~i~G~gGiGKTTla~~ 189 (190)
.....++|.+.-.+.+...+..+. --..+=|.|..|+||||+|..
T Consensus 20 ~~~~~l~Gh~~a~~~L~~a~~~gr-l~ha~L~~G~~G~GKttlA~~ 64 (351)
T PRK09112 20 SENTRLFGHEEAEAFLAQAYREGK-LHHALLFEGPEGIGKATLAFH 64 (351)
T ss_pred CchhhccCcHHHHHHHHHHHHcCC-CCeeEeeECCCCCCHHHHHHH
Confidence 445679999988888888776542 123567899999999999975
No 112
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=94.04 E-value=0.031 Score=44.75 Aligned_cols=21 Identities=24% Similarity=0.291 Sum_probs=18.1
Q ss_pred eEEEEEEcCCCCcHHHHhccC
Q 047923 170 VYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~v 190 (190)
=.+++|.|-.|.|||||.+.+
T Consensus 45 Ge~~~i~G~nGsGKSTLl~~l 65 (267)
T PRK14235 45 KTVTAFIGPSGCGKSTFLRCL 65 (267)
T ss_pred CCEEEEECCCCCCHHHHHHHH
Confidence 357899999999999999853
No 113
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=94.01 E-value=0.031 Score=44.86 Aligned_cols=21 Identities=24% Similarity=0.311 Sum_probs=18.2
Q ss_pred eEEEEEEcCCCCcHHHHhccC
Q 047923 170 VYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~v 190 (190)
=.+++|+|-.|.|||||++.+
T Consensus 51 Ge~~~I~G~nGsGKSTLl~~l 71 (272)
T PRK14236 51 NRVTAFIGPSGCGKSTLLRCF 71 (272)
T ss_pred CCEEEEECCCCCCHHHHHHHH
Confidence 358999999999999999853
No 114
>PRK10536 hypothetical protein; Provisional
Probab=94.01 E-value=0.074 Score=42.52 Aligned_cols=39 Identities=18% Similarity=0.169 Sum_probs=28.8
Q ss_pred ccccccchhHHHHHHHhhhcCCCeEEEEEEcCCCCcHHHHhcc
Q 047923 147 NQLVGRESRVEIIESLLAAESKDVYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 147 ~~~vG~d~~~~~~~~~l~~~~~~~~vi~i~G~gGiGKTTla~~ 189 (190)
..+.++......+..+|.. ..++-+.|..|.|||+||.+
T Consensus 55 ~~i~p~n~~Q~~~l~al~~----~~lV~i~G~aGTGKT~La~a 93 (262)
T PRK10536 55 SPILARNEAQAHYLKAIES----KQLIFATGEAGCGKTWISAA 93 (262)
T ss_pred ccccCCCHHHHHHHHHHhc----CCeEEEECCCCCCHHHHHHH
Confidence 4456676666666666643 23788999999999999975
No 115
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.00 E-value=0.029 Score=47.25 Aligned_cols=20 Identities=25% Similarity=0.353 Sum_probs=17.7
Q ss_pred eEEEEEEcCCCCcHHHHhcc
Q 047923 170 VYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~ 189 (190)
-.++.++|..|+||||++..
T Consensus 137 g~ii~lvGptGvGKTTtiak 156 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAK 156 (374)
T ss_pred CcEEEEECCCCCCHHHHHHH
Confidence 46899999999999999864
No 116
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.99 E-value=0.1 Score=44.18 Aligned_cols=21 Identities=29% Similarity=0.393 Sum_probs=18.2
Q ss_pred CeEEEEEEcCCCCcHHHHhcc
Q 047923 169 DVYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 169 ~~~vi~i~G~gGiGKTTla~~ 189 (190)
.-+++.++|..|+||||++..
T Consensus 205 ~~~ii~lvGptGvGKTTt~ak 225 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVK 225 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHH
Confidence 367999999999999999754
No 117
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=93.98 E-value=0.048 Score=45.85 Aligned_cols=21 Identities=33% Similarity=0.490 Sum_probs=18.7
Q ss_pred CeEEEEEEcCCCCcHHHHhcc
Q 047923 169 DVYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 169 ~~~vi~i~G~gGiGKTTla~~ 189 (190)
..++++|.|..|.|||||...
T Consensus 204 ~~~~~~~~g~~~~GKtt~~~~ 224 (366)
T PRK14489 204 APPLLGVVGYSGTGKTTLLEK 224 (366)
T ss_pred CccEEEEecCCCCCHHHHHHH
Confidence 477999999999999999764
No 118
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=93.98 E-value=0.032 Score=43.30 Aligned_cols=22 Identities=18% Similarity=0.181 Sum_probs=18.5
Q ss_pred CeEEEEEEcCCCCcHHHHhccC
Q 047923 169 DVYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 169 ~~~vi~i~G~gGiGKTTla~~v 190 (190)
.-.+++|.|-.|.|||||++.+
T Consensus 39 ~Ge~~~i~G~nGsGKSTLl~~l 60 (226)
T cd03248 39 PGEVTALVGPSGSGKSTVVALL 60 (226)
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 3457999999999999999853
No 119
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=93.95 E-value=0.061 Score=44.40 Aligned_cols=41 Identities=34% Similarity=0.362 Sum_probs=27.7
Q ss_pred cccccccchhHHHHHHHhhhcCCCeEEEEEEcCCCCcHHHHhccC
Q 047923 146 ENQLVGRESRVEIIESLLAAESKDVYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 146 ~~~~vG~d~~~~~~~~~l~~~~~~~~vi~i~G~gGiGKTTla~~v 190 (190)
...++|.+.....+...+..+. -+=+.|.+|+|||+||+.+
T Consensus 23 ~~~~~g~~~~~~~~l~a~~~~~----~vll~G~PG~gKT~la~~l 63 (329)
T COG0714 23 EKVVVGDEEVIELALLALLAGG----HVLLEGPPGVGKTLLARAL 63 (329)
T ss_pred CCeeeccHHHHHHHHHHHHcCC----CEEEECCCCccHHHHHHHH
Confidence 3448887766666554443331 2457799999999999863
No 120
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.92 E-value=0.033 Score=44.85 Aligned_cols=21 Identities=29% Similarity=0.303 Sum_probs=18.2
Q ss_pred eEEEEEEcCCCCcHHHHhccC
Q 047923 170 VYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~v 190 (190)
=.+++|.|..|.|||||++.+
T Consensus 47 Ge~~~I~G~nGsGKSTLl~~l 67 (276)
T PRK14271 47 RAVTSLMGPTGSGKTTFLRTL 67 (276)
T ss_pred CcEEEEECCCCCCHHHHHHHH
Confidence 457999999999999999853
No 121
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=93.88 E-value=0.034 Score=44.48 Aligned_cols=21 Identities=29% Similarity=0.294 Sum_probs=18.2
Q ss_pred eEEEEEEcCCCCcHHHHhccC
Q 047923 170 VYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~v 190 (190)
=.+++|.|-.|.|||||.+.+
T Consensus 46 Ge~~~I~G~nGsGKSTLl~~l 66 (267)
T PRK14237 46 NKITALIGPSGSGKSTYLRSL 66 (267)
T ss_pred CCEEEEECCCCCCHHHHHHHH
Confidence 357999999999999999853
No 122
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=93.86 E-value=0.03 Score=46.60 Aligned_cols=20 Identities=25% Similarity=0.310 Sum_probs=16.8
Q ss_pred EEEEEEcCCCCcHHHHhccC
Q 047923 171 YILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~~v 190 (190)
..+-|+|.+|+||||+++++
T Consensus 41 ~~i~I~G~~GtGKT~l~~~~ 60 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAVTKYV 60 (365)
T ss_pred CcEEEECCCCCCHHHHHHHH
Confidence 34778999999999999853
No 123
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=93.83 E-value=0.09 Score=37.40 Aligned_cols=43 Identities=21% Similarity=0.417 Sum_probs=31.3
Q ss_pred ccccccchhHHHHHHHhhh-----cCCCeEEEEEEcCCCCcHHHHhcc
Q 047923 147 NQLVGRESRVEIIESLLAA-----ESKDVYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 147 ~~~vG~d~~~~~~~~~l~~-----~~~~~~vi~i~G~gGiGKTTla~~ 189 (190)
.+++|..--.+.+.+.+.. ..++--|+...|-.|+|||.+|+.
T Consensus 25 ~~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~l 72 (127)
T PF06309_consen 25 RNLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRL 72 (127)
T ss_pred HHccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHH
Confidence 3577777666666555542 234578999999999999998875
No 124
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=93.82 E-value=0.098 Score=48.81 Aligned_cols=45 Identities=22% Similarity=0.385 Sum_probs=34.9
Q ss_pred cccccccchhHHHHHHHhhhc------CCC-eEEEEEEcCCCCcHHHHhccC
Q 047923 146 ENQLVGRESRVEIIESLLAAE------SKD-VYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 146 ~~~~vG~d~~~~~~~~~l~~~------~~~-~~vi~i~G~gGiGKTTla~~v 190 (190)
...++|.+.-++.+...+... .+. ...+-+.|..|+|||++|+++
T Consensus 564 ~~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~L 615 (852)
T TIGR03346 564 HERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKAL 615 (852)
T ss_pred hcccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHH
Confidence 356899999999998877642 111 456779999999999999864
No 125
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=93.75 E-value=0.036 Score=45.94 Aligned_cols=21 Identities=43% Similarity=0.484 Sum_probs=18.4
Q ss_pred eEEEEEEcCCCCcHHHHhccC
Q 047923 170 VYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~v 190 (190)
-.+++|+|-.|.|||||++.+
T Consensus 47 Ge~~~lvG~sGsGKSTLlk~i 67 (331)
T PRK15079 47 GETLGVVGESGCGKSTFARAI 67 (331)
T ss_pred CCEEEEECCCCCCHHHHHHHH
Confidence 458999999999999999864
No 126
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=93.70 E-value=0.038 Score=44.75 Aligned_cols=21 Identities=29% Similarity=0.229 Sum_probs=18.2
Q ss_pred eEEEEEEcCCCCcHHHHhccC
Q 047923 170 VYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~v 190 (190)
=.+++|.|-.|.|||||++.+
T Consensus 63 Ge~~~liG~NGsGKSTLl~~I 83 (282)
T cd03291 63 GEMLAITGSTGSGKTSLLMLI 83 (282)
T ss_pred CCEEEEECCCCCCHHHHHHHH
Confidence 357999999999999999853
No 127
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.68 E-value=0.041 Score=44.54 Aligned_cols=20 Identities=40% Similarity=0.579 Sum_probs=17.8
Q ss_pred EEEEEEcCCCCcHHHHhccC
Q 047923 171 YILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~~v 190 (190)
.+++|.|..|.|||||.+.+
T Consensus 66 e~~~l~G~nGsGKSTLl~~L 85 (286)
T PRK14275 66 YVTAIIGPSGCGKSTFLRAI 85 (286)
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 58999999999999998753
No 128
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=93.68 E-value=0.063 Score=45.16 Aligned_cols=45 Identities=20% Similarity=0.141 Sum_probs=33.9
Q ss_pred cccccccccchhHHHHHHHhhhcCCCeEEEEEEcCCCCcHHHHhcc
Q 047923 144 DKENQLVGRESRVEIIESLLAAESKDVYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 144 ~~~~~~vG~d~~~~~~~~~l~~~~~~~~vi~i~G~gGiGKTTla~~ 189 (190)
....+++|.+.-.+.+.+.+..+. --.-+=++|..|+||||+|.+
T Consensus 16 ~~~~~iiGq~~~~~~L~~~~~~~r-l~HA~Lf~Gp~G~GK~~lA~~ 60 (365)
T PRK07471 16 RETTALFGHAAAEAALLDAYRSGR-LHHAWLIGGPQGIGKATLAYR 60 (365)
T ss_pred CchhhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHH
Confidence 344679999988888887776542 123466899999999999975
No 129
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=93.67 E-value=0.069 Score=48.64 Aligned_cols=46 Identities=17% Similarity=0.278 Sum_probs=34.9
Q ss_pred cccccccccchhHHHHHHHhhhcCCCeEEEEEEcCCCCcHHHHhccC
Q 047923 144 DKENQLVGRESRVEIIESLLAAESKDVYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 144 ~~~~~~vG~d~~~~~~~~~l~~~~~~~~vi~i~G~gGiGKTTla~~v 190 (190)
....+++|.+.-++.+...+..+. -....=++|..|+||||+|+.+
T Consensus 15 ~~f~dIiGQe~~v~~L~~aI~~~r-l~HAYLF~GP~GtGKTt~AriL 60 (725)
T PRK07133 15 KTFDDIVGQDHIVQTLKNIIKSNK-ISHAYLFSGPRGTGKTSVAKIF 60 (725)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCcHHHHHHHH
Confidence 344679999998888888886542 1344558999999999999853
No 130
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=93.64 E-value=0.038 Score=45.71 Aligned_cols=20 Identities=35% Similarity=0.451 Sum_probs=17.6
Q ss_pred eEEEEEEcCCCCcHHHHhcc
Q 047923 170 VYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~ 189 (190)
...+.|.|..|.|||||++.
T Consensus 162 ~~~~~~~G~~~~gkstl~~~ 181 (325)
T TIGR01526 162 VKTVAILGGESTGKSTLVNK 181 (325)
T ss_pred CcEEEEECCCCCCHHHHHHH
Confidence 45789999999999999985
No 131
>PF13245 AAA_19: Part of AAA domain
Probab=93.63 E-value=0.039 Score=35.59 Aligned_cols=17 Identities=29% Similarity=0.292 Sum_probs=13.3
Q ss_pred EEEEEEcCCCCcHHHHh
Q 047923 171 YILGIWGVGSIGKTTIA 187 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla 187 (190)
+++-|.|.+|.||||++
T Consensus 11 ~~~vv~g~pGtGKT~~~ 27 (76)
T PF13245_consen 11 PLFVVQGPPGTGKTTTL 27 (76)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 35667899999999554
No 132
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.63 E-value=0.04 Score=43.96 Aligned_cols=22 Identities=23% Similarity=0.347 Sum_probs=18.5
Q ss_pred CeEEEEEEcCCCCcHHHHhccC
Q 047923 169 DVYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 169 ~~~vi~i~G~gGiGKTTla~~v 190 (190)
.=.+++|.|..|.|||||.+.+
T Consensus 41 ~Ge~~~i~G~nGsGKSTLl~~l 62 (265)
T PRK14252 41 EKQVTALIGPSGCGKSTFLRCF 62 (265)
T ss_pred CCcEEEEECCCCCCHHHHHHHH
Confidence 3457999999999999998753
No 133
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=93.61 E-value=0.12 Score=47.60 Aligned_cols=44 Identities=16% Similarity=0.227 Sum_probs=33.9
Q ss_pred ccccccchhHHHHHHHhhhc------CCC-eEEEEEEcCCCCcHHHHhccC
Q 047923 147 NQLVGRESRVEIIESLLAAE------SKD-VYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 147 ~~~vG~d~~~~~~~~~l~~~------~~~-~~vi~i~G~gGiGKTTla~~v 190 (190)
..++|.+.-++.+.+.+... .++ ...+-++|..|+|||+||+++
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~L 508 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQL 508 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHH
Confidence 46889999999988877632 122 456778999999999999863
No 134
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=93.61 E-value=0.034 Score=50.24 Aligned_cols=20 Identities=40% Similarity=0.479 Sum_probs=18.0
Q ss_pred eEEEEEEcCCCCcHHHHhcc
Q 047923 170 VYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~ 189 (190)
-+++-++|.+|+||||||..
T Consensus 326 kKilLL~GppGlGKTTLAHV 345 (877)
T KOG1969|consen 326 KKILLLCGPPGLGKTTLAHV 345 (877)
T ss_pred cceEEeecCCCCChhHHHHH
Confidence 67888999999999999964
No 135
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=93.58 E-value=0.38 Score=41.10 Aligned_cols=40 Identities=25% Similarity=0.228 Sum_probs=27.0
Q ss_pred ccccchhHHHHHHHhhhcCCCeEEEEEEcCCCCcHHHHhcc
Q 047923 149 LVGRESRVEIIESLLAAESKDVYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 149 ~vG~d~~~~~~~~~l~~~~~~~~vi~i~G~gGiGKTTla~~ 189 (190)
..|.......+.+++. +-..-.++-|-|.+|+||||+|-.
T Consensus 174 ~~gi~tG~~~LD~~~~-G~~~g~liviag~pg~GKT~~al~ 213 (421)
T TIGR03600 174 LTGLSTGLPKLDRLTN-GLVKGDLIVIGARPSMGKTTLALN 213 (421)
T ss_pred CcceeCCChhHHHHhc-CCCCCceEEEEeCCCCCHHHHHHH
Confidence 4566666666666654 222244677889999999999853
No 136
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=93.58 E-value=0.041 Score=44.96 Aligned_cols=20 Identities=35% Similarity=0.388 Sum_probs=17.4
Q ss_pred EEEEEEcCCCCcHHHHhccC
Q 047923 171 YILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~~v 190 (190)
-++.|.|..|+||||+|+.+
T Consensus 93 ~iIlI~G~sgsGKStlA~~L 112 (301)
T PRK04220 93 IIILIGGASGVGTSTIAFEL 112 (301)
T ss_pred EEEEEECCCCCCHHHHHHHH
Confidence 47889999999999999753
No 137
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.56 E-value=0.039 Score=48.03 Aligned_cols=20 Identities=25% Similarity=0.353 Sum_probs=17.7
Q ss_pred eEEEEEEcCCCCcHHHHhcc
Q 047923 170 VYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~ 189 (190)
-.+++++|..|+||||++..
T Consensus 256 g~Vi~LvGpnGvGKTTTiaK 275 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAK 275 (484)
T ss_pred CcEEEEECCCCccHHHHHHH
Confidence 36999999999999998764
No 138
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=93.55 E-value=0.16 Score=42.48 Aligned_cols=21 Identities=33% Similarity=0.452 Sum_probs=18.0
Q ss_pred CeEEEEEEcCCCCcHHHHhcc
Q 047923 169 DVYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 169 ~~~vi~i~G~gGiGKTTla~~ 189 (190)
+...++|+|.+++|||||-.+
T Consensus 188 ~~~~ValvG~~NvGKSSLln~ 208 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNA 208 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHH
Confidence 456799999999999999764
No 139
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=93.45 E-value=0.076 Score=48.68 Aligned_cols=44 Identities=18% Similarity=0.169 Sum_probs=30.7
Q ss_pred ccccccchhHHHHHHHhhh-----------cCCCeEEEEEEcCCCCcHHHHhccC
Q 047923 147 NQLVGRESRVEIIESLLAA-----------ESKDVYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 147 ~~~vG~d~~~~~~~~~l~~-----------~~~~~~vi~i~G~gGiGKTTla~~v 190 (190)
.++.|.+.-++.+.+.+.. +-..-+-+-++|.+|.|||+||+++
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakal 507 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAV 507 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHH
Confidence 4567888887777665542 1111344678999999999999874
No 140
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.36 E-value=0.042 Score=48.31 Aligned_cols=20 Identities=25% Similarity=0.252 Sum_probs=17.8
Q ss_pred eEEEEEEcCCCCcHHHHhcc
Q 047923 170 VYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~ 189 (190)
-.+++|+|.+|+||||++..
T Consensus 350 G~vIaLVGPtGvGKTTtaak 369 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAK 369 (559)
T ss_pred CCEEEEECCCCCCHHHHHHH
Confidence 47999999999999999864
No 141
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.33 E-value=0.046 Score=46.79 Aligned_cols=20 Identities=25% Similarity=0.307 Sum_probs=17.7
Q ss_pred eEEEEEEcCCCCcHHHHhcc
Q 047923 170 VYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~ 189 (190)
-.+++++|..|+||||+...
T Consensus 191 g~vi~lvGpnG~GKTTtlak 210 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAK 210 (420)
T ss_pred CcEEEEECCCCCCHHHHHHH
Confidence 47899999999999999863
No 142
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=93.32 E-value=0.053 Score=44.32 Aligned_cols=19 Identities=37% Similarity=0.293 Sum_probs=16.2
Q ss_pred EEEEEcCCCCcHHHHhccC
Q 047923 172 ILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 172 vi~i~G~gGiGKTTla~~v 190 (190)
.+-|.|..|.||||+++++
T Consensus 134 ~ilI~G~tGSGKTTll~al 152 (299)
T TIGR02782 134 NILVVGGTGSGKTTLANAL 152 (299)
T ss_pred eEEEECCCCCCHHHHHHHH
Confidence 4569999999999999763
No 143
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=93.31 E-value=0.064 Score=47.31 Aligned_cols=45 Identities=20% Similarity=0.324 Sum_probs=34.6
Q ss_pred ccccccccchhHHHHHHHhhhcCC-CeEEEEEEcCCCCcHHHHhccC
Q 047923 145 KENQLVGRESRVEIIESLLAAESK-DVYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 145 ~~~~~vG~d~~~~~~~~~l~~~~~-~~~vi~i~G~gGiGKTTla~~v 190 (190)
....++|....++++.+.+..-.. +.. |-|+|-.|.|||++|+++
T Consensus 194 ~~~~liG~s~~~~~~~~~~~~~a~~~~p-vli~Ge~GtGK~~lA~~i 239 (534)
T TIGR01817 194 KEDGIIGKSPAMRQVVDQARVVARSNST-VLLRGESGTGKELIAKAI 239 (534)
T ss_pred ccCceEECCHHHHHHHHHHHHHhCcCCC-EEEECCCCccHHHHHHHH
Confidence 346789999999999887765322 333 449999999999999864
No 144
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=93.28 E-value=0.074 Score=43.18 Aligned_cols=19 Identities=26% Similarity=0.345 Sum_probs=17.0
Q ss_pred EEEEEEcCCCCcHHHHhcc
Q 047923 171 YILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~~ 189 (190)
.++++.|..|+|||||.+.
T Consensus 162 k~~~~~G~sg~GKSTlin~ 180 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINA 180 (287)
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 5789999999999999864
No 145
>PRK05642 DNA replication initiation factor; Validated
Probab=93.24 E-value=0.047 Score=42.95 Aligned_cols=19 Identities=21% Similarity=0.723 Sum_probs=17.1
Q ss_pred EEEEEEcCCCCcHHHHhcc
Q 047923 171 YILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~~ 189 (190)
+.+-|||-.|+|||.|+++
T Consensus 46 ~~l~l~G~~G~GKTHLl~a 64 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQA 64 (234)
T ss_pred CeEEEECCCCCCHHHHHHH
Confidence 5678999999999999986
No 146
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.22 E-value=0.051 Score=44.44 Aligned_cols=21 Identities=24% Similarity=0.319 Sum_probs=18.2
Q ss_pred eEEEEEEcCCCCcHHHHhccC
Q 047923 170 VYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~v 190 (190)
=.+++|+|..|.|||||.+.+
T Consensus 71 Ge~~~IvG~nGsGKSTLl~~L 91 (305)
T PRK14264 71 KSVTALIGPSGCGKSTFLRCL 91 (305)
T ss_pred CCEEEEECCCCCCHHHHHHHH
Confidence 458999999999999999753
No 147
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.21 E-value=0.051 Score=44.00 Aligned_cols=21 Identities=24% Similarity=0.313 Sum_probs=18.1
Q ss_pred eEEEEEEcCCCCcHHHHhccC
Q 047923 170 VYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~v 190 (190)
=.+++|.|-.|.|||||.+.+
T Consensus 65 Ge~~~I~G~nGsGKSTLl~~l 85 (285)
T PRK14254 65 NQVTAMIGPSGCGKSTFLRCI 85 (285)
T ss_pred CCEEEEECCCCCCHHHHHHHH
Confidence 357999999999999998753
No 148
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=93.21 E-value=0.067 Score=43.85 Aligned_cols=20 Identities=30% Similarity=0.190 Sum_probs=17.7
Q ss_pred eEEEEEEcCCCCcHHHHhcc
Q 047923 170 VYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~ 189 (190)
-..+.|.|-.|.|||||+++
T Consensus 144 ~~~ili~G~tGsGKTTll~a 163 (308)
T TIGR02788 144 RKNIIISGGTGSGKTTFLKS 163 (308)
T ss_pred CCEEEEECCCCCCHHHHHHH
Confidence 46789999999999999875
No 149
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.18 E-value=0.052 Score=44.78 Aligned_cols=21 Identities=29% Similarity=0.203 Sum_probs=18.2
Q ss_pred eEEEEEEcCCCCcHHHHhccC
Q 047923 170 VYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~v 190 (190)
=.+++|+|-.|.|||||.+.+
T Consensus 52 Ge~~~I~G~nGsGKSTLl~~L 72 (320)
T PRK13631 52 NKIYFIIGNSGSGKSTLVTHF 72 (320)
T ss_pred CCEEEEECCCCCCHHHHHHHH
Confidence 357999999999999998753
No 150
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=93.17 E-value=0.036 Score=48.13 Aligned_cols=20 Identities=40% Similarity=0.529 Sum_probs=17.6
Q ss_pred EEEEEEcCCCCcHHHHhccC
Q 047923 171 YILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~~v 190 (190)
|--|+||..|+|||||-+++
T Consensus 107 rRYGLvGrNG~GKsTLLRai 126 (582)
T KOG0062|consen 107 RRYGLVGRNGIGKSTLLRAI 126 (582)
T ss_pred cccceeCCCCCcHHHHHHHH
Confidence 55799999999999998874
No 151
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=93.12 E-value=0.076 Score=40.08 Aligned_cols=30 Identities=13% Similarity=-0.106 Sum_probs=21.8
Q ss_pred ccchHHHHHHhhcccceEEEecCCCcCchh
Q 047923 17 DEISESIAYAIESPAISVIIFSEGYPFSRW 46 (190)
Q Consensus 17 ~~~~~~l~~ai~~s~~~ivv~S~~y~~S~w 46 (190)
+.|...+...++.+++.+.|+.-.-....|
T Consensus 22 ~~~~~~l~~~~~~ad~il~VvD~~~~~~~~ 51 (190)
T cd01855 22 DFILNLLSSISPKKALVVHVVDIFDFPGSL 51 (190)
T ss_pred HHHHHHHHhcccCCcEEEEEEECccCCCcc
Confidence 344566777889999999999976554444
No 152
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=93.12 E-value=0.11 Score=38.68 Aligned_cols=31 Identities=23% Similarity=0.388 Sum_probs=23.2
Q ss_pred hhHHHHHHHhhhcCCCeEEEEEEcCCCCcHHHHhcc
Q 047923 154 SRVEIIESLLAAESKDVYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 154 ~~~~~~~~~l~~~~~~~~vi~i~G~gGiGKTTla~~ 189 (190)
..++++.++|.. +++.+.|..|+|||||..+
T Consensus 24 ~g~~~l~~~l~~-----k~~vl~G~SGvGKSSLiN~ 54 (161)
T PF03193_consen 24 EGIEELKELLKG-----KTSVLLGQSGVGKSSLINA 54 (161)
T ss_dssp TTHHHHHHHHTT-----SEEEEECSTTSSHHHHHHH
T ss_pred cCHHHHHHHhcC-----CEEEEECCCCCCHHHHHHH
Confidence 345666666643 4788899999999999864
No 153
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=93.11 E-value=0.09 Score=42.27 Aligned_cols=34 Identities=29% Similarity=0.495 Sum_probs=23.9
Q ss_pred HHHHHHHhhhcCC-CeEEEEEEcCCCCcHHHHhcc
Q 047923 156 VEIIESLLAAESK-DVYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 156 ~~~~~~~l~~~~~-~~~vi~i~G~gGiGKTTla~~ 189 (190)
...+...|..... ..-+|||.|-.|+||+|+|+.
T Consensus 67 ~~~~~~~l~~~~~~~pfIIgiaGsvavGKST~ar~ 101 (283)
T COG1072 67 FAELLRFLGTNNQQRPFIIGIAGSVAVGKSTTARI 101 (283)
T ss_pred HHHHHHHhccCCCCCCEEEEeccCccccHHHHHHH
Confidence 3344444443333 367999999999999999974
No 154
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=93.08 E-value=0.047 Score=41.13 Aligned_cols=20 Identities=35% Similarity=0.313 Sum_probs=16.6
Q ss_pred EEEEEEcCCCCcHHHHhccC
Q 047923 171 YILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~~v 190 (190)
.-+-++|..|+|||.||.++
T Consensus 48 ~~l~l~G~~G~GKThLa~ai 67 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVAI 67 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHH
T ss_pred eEEEEEhhHhHHHHHHHHHH
Confidence 45889999999999999753
No 155
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=93.06 E-value=0.067 Score=45.68 Aligned_cols=20 Identities=25% Similarity=0.207 Sum_probs=17.1
Q ss_pred EEEEEEcCCCCcHHHHhccC
Q 047923 171 YILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~~v 190 (190)
..+-++|..|+|||+||+++
T Consensus 117 ~~iLL~GP~GsGKT~lAraL 136 (413)
T TIGR00382 117 SNILLIGPTGSGKTLLAQTL 136 (413)
T ss_pred ceEEEECCCCcCHHHHHHHH
Confidence 35778999999999999864
No 156
>PRK13409 putative ATPase RIL; Provisional
Probab=93.04 E-value=0.056 Score=48.31 Aligned_cols=21 Identities=38% Similarity=0.460 Sum_probs=18.3
Q ss_pred eEEEEEEcCCCCcHHHHhccC
Q 047923 170 VYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~v 190 (190)
=.++||+|..|.|||||.+.+
T Consensus 99 Gev~gLvG~NGaGKSTLlkiL 119 (590)
T PRK13409 99 GKVTGILGPNGIGKTTAVKIL 119 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHH
Confidence 468999999999999998753
No 157
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=92.98 E-value=0.095 Score=44.01 Aligned_cols=46 Identities=26% Similarity=0.221 Sum_probs=29.2
Q ss_pred cccccccccchhHHHH---HHHhhhcCCCeEEEEEEcCCCCcHHHHhcc
Q 047923 144 DKENQLVGRESRVEII---ESLLAAESKDVYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 144 ~~~~~~vG~d~~~~~~---~~~l~~~~~~~~vi~i~G~gGiGKTTla~~ 189 (190)
..+.++||...-.+.. .+++....=.=+.+=|.|.+|.|||+||-+
T Consensus 21 ~~~~GlVGQ~~AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ 69 (398)
T PF06068_consen 21 YIADGLVGQEKAREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMA 69 (398)
T ss_dssp SEETTEES-HHHHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHH
T ss_pred eccccccChHHHHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHH
Confidence 4567899998766665 344443321235666999999999999964
No 158
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=92.97 E-value=0.065 Score=42.81 Aligned_cols=37 Identities=30% Similarity=0.203 Sum_probs=25.9
Q ss_pred chhHHHHHHHhhhcCCCeEEEEEEcCCCCcHHHHhcc
Q 047923 153 ESRVEIIESLLAAESKDVYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 153 d~~~~~~~~~l~~~~~~~~vi~i~G~gGiGKTTla~~ 189 (190)
....+.+.++|......-..+-|.|..|.||||++++
T Consensus 110 ~~~~~~~~~~l~~~v~~~~~ili~G~tGSGKTT~l~a 146 (270)
T PF00437_consen 110 GSIPEEIAEFLRSAVRGRGNILISGPTGSGKTTLLNA 146 (270)
T ss_dssp HHCHHHHHHHHHHCHHTTEEEEEEESTTSSHHHHHHH
T ss_pred hhhHHHHHHHHhhccccceEEEEECCCccccchHHHH
Confidence 3344556666654322356788999999999999875
No 159
>CHL00095 clpC Clp protease ATP binding subunit
Probab=92.95 E-value=0.18 Score=46.97 Aligned_cols=44 Identities=16% Similarity=0.329 Sum_probs=33.1
Q ss_pred ccccccchhHHHHHHHhhhc------CCC-eEEEEEEcCCCCcHHHHhccC
Q 047923 147 NQLVGRESRVEIIESLLAAE------SKD-VYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 147 ~~~vG~d~~~~~~~~~l~~~------~~~-~~vi~i~G~gGiGKTTla~~v 190 (190)
..++|.+.-++.+...+... .+. ...+-++|..|+|||+||+++
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~L 559 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKAL 559 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHH
Confidence 57889999999987766531 111 445668999999999999863
No 160
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=92.94 E-value=0.14 Score=37.22 Aligned_cols=38 Identities=26% Similarity=0.418 Sum_probs=24.7
Q ss_pred ccchhHHHHHHHhhhcCCCeEEEEEEcCCCCcHHHHhcc
Q 047923 151 GRESRVEIIESLLAAESKDVYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 151 G~d~~~~~~~~~l~~~~~~~~vi~i~G~gGiGKTTla~~ 189 (190)
|.+.-.+.+.+.+.......+ +.++|.+|+|||||...
T Consensus 83 gi~~L~~~l~~~~~~~~~~~~-~~~ig~~~~Gkssl~~~ 120 (156)
T cd01859 83 GTKILRRTIKELAKIDGKEGK-VGVVGYPNVGKSSIINA 120 (156)
T ss_pred cHHHHHHHHHHHHhhcCCCcE-EEEECCCCCCHHHHHHH
Confidence 555555555555543322344 48999999999999754
No 161
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=92.92 E-value=0.055 Score=48.66 Aligned_cols=21 Identities=33% Similarity=0.213 Sum_probs=18.3
Q ss_pred eEEEEEEcCCCCcHHHHhccC
Q 047923 170 VYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~v 190 (190)
=.+++|+|..|.|||||++++
T Consensus 42 Ge~~~lvG~nGsGKSTLl~~l 62 (623)
T PRK10261 42 GETLAIVGESGSGKSVTALAL 62 (623)
T ss_pred CCEEEEECCCCChHHHHHHHH
Confidence 357999999999999999864
No 162
>PLN02199 shikimate kinase
Probab=92.91 E-value=0.054 Score=44.15 Aligned_cols=19 Identities=26% Similarity=0.328 Sum_probs=16.6
Q ss_pred EEEEEEcCCCCcHHHHhcc
Q 047923 171 YILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~~ 189 (190)
+.|.++||.|.||||+++.
T Consensus 103 ~~I~LIG~~GSGKSTVgr~ 121 (303)
T PLN02199 103 RSMYLVGMMGSGKTTVGKL 121 (303)
T ss_pred CEEEEECCCCCCHHHHHHH
Confidence 3578999999999999975
No 163
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.83 E-value=0.56 Score=38.55 Aligned_cols=44 Identities=20% Similarity=0.273 Sum_probs=32.5
Q ss_pred ccccccchhHHHHHHHhhh----------cCCCeEEEEEEcCCCCcHHHHhccC
Q 047923 147 NQLVGRESRVEIIESLLAA----------ESKDVYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 147 ~~~vG~d~~~~~~~~~l~~----------~~~~~~vi~i~G~gGiGKTTla~~v 190 (190)
+++-|.|.-++.+.+..-. .....+-|-++|.+|.||+.||++|
T Consensus 133 sDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAV 186 (439)
T KOG0739|consen 133 SDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAV 186 (439)
T ss_pred hhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHH
Confidence 3556999888888764221 1223777888999999999999986
No 164
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=92.82 E-value=0.062 Score=48.98 Aligned_cols=20 Identities=25% Similarity=0.275 Sum_probs=17.8
Q ss_pred EEEEEEcCCCCcHHHHhccC
Q 047923 171 YILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~~v 190 (190)
..++|+|-.|.|||||+|.+
T Consensus 500 e~vaIvG~SGsGKSTL~KLL 519 (709)
T COG2274 500 EKVAIVGRSGSGKSTLLKLL 519 (709)
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 56999999999999999853
No 165
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=92.81 E-value=0.056 Score=46.67 Aligned_cols=20 Identities=25% Similarity=0.360 Sum_probs=17.2
Q ss_pred EEEEEEcCCCCcHHHHhccC
Q 047923 171 YILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~~v 190 (190)
.-+-|||..|+|||+|++++
T Consensus 142 npl~L~G~~G~GKTHLl~Ai 161 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAA 161 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHH
Confidence 45779999999999999864
No 166
>PRK08116 hypothetical protein; Validated
Probab=92.81 E-value=0.058 Score=43.39 Aligned_cols=19 Identities=37% Similarity=0.473 Sum_probs=16.6
Q ss_pred EEEEEcCCCCcHHHHhccC
Q 047923 172 ILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 172 vi~i~G~gGiGKTTla~~v 190 (190)
-+-+||-.|.|||.||.++
T Consensus 116 gl~l~G~~GtGKThLa~ai 134 (268)
T PRK08116 116 GLLLWGSVGTGKTYLAACI 134 (268)
T ss_pred eEEEECCCCCCHHHHHHHH
Confidence 4779999999999999864
No 167
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=92.80 E-value=0.064 Score=42.63 Aligned_cols=20 Identities=30% Similarity=0.393 Sum_probs=17.7
Q ss_pred EEEEEEcCCCCcHHHHhccC
Q 047923 171 YILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~~v 190 (190)
.+++|.|-.|.|||||.+.+
T Consensus 48 e~~~i~G~nGsGKSTLl~~l 67 (257)
T cd03288 48 QKVGICGRTGSGKSSLSLAF 67 (257)
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 57999999999999999853
No 168
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=92.78 E-value=0.1 Score=44.30 Aligned_cols=21 Identities=33% Similarity=0.300 Sum_probs=17.7
Q ss_pred eEEEEEEcCCCCcHHHHhccC
Q 047923 170 VYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~v 190 (190)
...+-|+|..|.|||+|++++
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai 156 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAI 156 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHH
Confidence 345789999999999999864
No 169
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=92.76 E-value=0.067 Score=46.84 Aligned_cols=21 Identities=29% Similarity=0.340 Sum_probs=18.3
Q ss_pred eEEEEEEcCCCCcHHHHhccC
Q 047923 170 VYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~v 190 (190)
=.+++|.|..|.|||||.+.+
T Consensus 289 Ge~~~l~G~NGsGKSTLlk~i 309 (510)
T PRK09700 289 GEILGFAGLVGSGRTELMNCL 309 (510)
T ss_pred CcEEEEECCCCCCHHHHHHHH
Confidence 358899999999999999854
No 170
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=92.76 E-value=0.18 Score=42.25 Aligned_cols=46 Identities=26% Similarity=0.206 Sum_probs=32.9
Q ss_pred cccccccccchhHHH---HHHHhhhcCCCeEEEEEEcCCCCcHHHHhcc
Q 047923 144 DKENQLVGRESRVEI---IESLLAAESKDVYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 144 ~~~~~~vG~d~~~~~---~~~~l~~~~~~~~vi~i~G~gGiGKTTla~~ 189 (190)
....++||...-.+. +.++...+.-.-+-|=|.|.+|.|||+||-.
T Consensus 36 ~~~dG~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~g 84 (450)
T COG1224 36 FIGDGLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMG 84 (450)
T ss_pred EcCCcccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHH
Confidence 355789998866554 3556655433356777899999999999953
No 171
>PRK13409 putative ATPase RIL; Provisional
Probab=92.76 E-value=0.062 Score=48.05 Aligned_cols=20 Identities=45% Similarity=0.625 Sum_probs=17.7
Q ss_pred EEEEEEcCCCCcHHHHhccC
Q 047923 171 YILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~~v 190 (190)
.+++|.|..|.|||||++.+
T Consensus 366 eiv~l~G~NGsGKSTLlk~L 385 (590)
T PRK13409 366 EVIGIVGPNGIGKTTFAKLL 385 (590)
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 47999999999999999853
No 172
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.75 E-value=0.17 Score=42.80 Aligned_cols=65 Identities=18% Similarity=0.265 Sum_probs=38.0
Q ss_pred hhhhHHHHHHHHHhhhhhhhhccccccccccchhHHHHHHHhhhc----------CCCeEEEEEEcCCCCcHHHHhccC
Q 047923 122 ESELIKEVVNQILKRLAEVLLCDKENQLVGRESRVEIIESLLAAE----------SKDVYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 122 e~~~i~~iv~~v~~~l~~~~~~~~~~~~vG~d~~~~~~~~~l~~~----------~~~~~vi~i~G~gGiGKTTla~~v 190 (190)
+..+++.+-.+|.+.-+. ..=+++.|...-++-+.+..... ....+-+-.+|.+|.|||-|||+|
T Consensus 191 d~~Lve~lerdIl~~np~----ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAv 265 (491)
T KOG0738|consen 191 DADLVEALERDILQRNPN----IKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAV 265 (491)
T ss_pred hHHHHHHHHHHHhccCCC----cChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHH
Confidence 445555555555433211 12245677776655554432211 112566678899999999999985
No 173
>PRK06921 hypothetical protein; Provisional
Probab=92.75 E-value=0.059 Score=43.29 Aligned_cols=21 Identities=24% Similarity=0.289 Sum_probs=18.0
Q ss_pred eEEEEEEcCCCCcHHHHhccC
Q 047923 170 VYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~v 190 (190)
-.-+-++|-.|+|||+||.++
T Consensus 117 ~~~l~l~G~~G~GKThLa~ai 137 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAA 137 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHH
Confidence 456789999999999999864
No 174
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=92.74 E-value=0.064 Score=46.92 Aligned_cols=20 Identities=35% Similarity=0.511 Sum_probs=17.9
Q ss_pred EEEEEEcCCCCcHHHHhccC
Q 047923 171 YILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~~v 190 (190)
.+++|+|..|.|||||.+.+
T Consensus 289 e~~~l~G~NGsGKSTLlk~i 308 (506)
T PRK13549 289 EILGIAGLVGAGRTELVQCL 308 (506)
T ss_pred cEEEEeCCCCCCHHHHHHHH
Confidence 58999999999999999864
No 175
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=92.73 E-value=0.067 Score=46.86 Aligned_cols=20 Identities=40% Similarity=0.539 Sum_probs=18.0
Q ss_pred EEEEEEcCCCCcHHHHhccC
Q 047923 171 YILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~~v 190 (190)
.+++|.|..|.|||||.+.+
T Consensus 290 e~~~l~G~NGsGKSTLl~~i 309 (510)
T PRK15439 290 EILGLAGVVGAGRTELAETL 309 (510)
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 58999999999999999864
No 176
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=92.71 E-value=0.067 Score=46.60 Aligned_cols=20 Identities=35% Similarity=0.388 Sum_probs=17.9
Q ss_pred EEEEEEcCCCCcHHHHhccC
Q 047923 171 YILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~~v 190 (190)
.+++|+|..|.|||||.+.+
T Consensus 275 e~~~l~G~nGsGKSTLl~~l 294 (491)
T PRK10982 275 EILGIAGLVGAKRTDIVETL 294 (491)
T ss_pred cEEEEecCCCCCHHHHHHHH
Confidence 58999999999999998864
No 177
>PRK06835 DNA replication protein DnaC; Validated
Probab=92.67 E-value=0.061 Score=44.59 Aligned_cols=20 Identities=25% Similarity=0.240 Sum_probs=17.6
Q ss_pred EEEEEEcCCCCcHHHHhccC
Q 047923 171 YILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~~v 190 (190)
.-+-++|-.|+|||.||.++
T Consensus 184 ~~Lll~G~~GtGKThLa~aI 203 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCI 203 (329)
T ss_pred CcEEEECCCCCcHHHHHHHH
Confidence 56889999999999999864
No 178
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=92.63 E-value=0.11 Score=46.74 Aligned_cols=40 Identities=28% Similarity=0.427 Sum_probs=31.3
Q ss_pred ccccccchhHHHHHHHhhhcCCCeEEEEEEcCCCCcHHHHhccC
Q 047923 147 NQLVGRESRVEIIESLLAAESKDVYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 147 ~~~vG~d~~~~~~~~~l~~~~~~~~vi~i~G~gGiGKTTla~~v 190 (190)
+.++|.+.-++.+...+... +.+-++|-+|.||||+|+++
T Consensus 31 ~~vigq~~a~~~L~~~~~~~----~~~l~~G~~G~GKttla~~l 70 (637)
T PRK13765 31 DQVIGQEHAVEVIKKAAKQR----RHVMMIGSPGTGKSMLAKAM 70 (637)
T ss_pred HHcCChHHHHHHHHHHHHhC----CeEEEECCCCCcHHHHHHHH
Confidence 46889888888777666544 35778999999999999863
No 179
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=92.60 E-value=0.072 Score=42.08 Aligned_cols=20 Identities=30% Similarity=0.396 Sum_probs=17.4
Q ss_pred eEEEEEEcCCCCcHHHHhcc
Q 047923 170 VYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~ 189 (190)
=..+||+|..|.|||||-|.
T Consensus 53 Ge~vGiiG~NGaGKSTLlkl 72 (249)
T COG1134 53 GERVGIIGHNGAGKSTLLKL 72 (249)
T ss_pred CCEEEEECCCCCcHHHHHHH
Confidence 34699999999999999874
No 180
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=92.58 E-value=0.13 Score=47.21 Aligned_cols=38 Identities=24% Similarity=0.496 Sum_probs=29.7
Q ss_pred ccccccchhHHHHHHHhhhcC--CCeEEEEEEcCCCCcHHHHhc
Q 047923 147 NQLVGRESRVEIIESLLAAES--KDVYILGIWGVGSIGKTTIAR 188 (190)
Q Consensus 147 ~~~vG~d~~~~~~~~~l~~~~--~~~~vi~i~G~gGiGKTTla~ 188 (190)
.-++|||.+.+.+.+.|.... |.+ ++|-+|+|||+++.
T Consensus 170 DPvIGRd~EI~r~iqIL~RR~KNNPv----LiGEpGVGKTAIvE 209 (786)
T COG0542 170 DPVIGRDEEIRRTIQILSRRTKNNPV----LVGEPGVGKTAIVE 209 (786)
T ss_pred CCCcChHHHHHHHHHHHhccCCCCCe----EecCCCCCHHHHHH
Confidence 347899999999999887532 324 34999999999875
No 181
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=92.57 E-value=0.19 Score=46.88 Aligned_cols=45 Identities=20% Similarity=0.355 Sum_probs=34.6
Q ss_pred cccccccchhHHHHHHHhhhc------CC-CeEEEEEEcCCCCcHHHHhccC
Q 047923 146 ENQLVGRESRVEIIESLLAAE------SK-DVYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 146 ~~~~vG~d~~~~~~~~~l~~~------~~-~~~vi~i~G~gGiGKTTla~~v 190 (190)
...++|.+.-++.+.+.+... .+ ...++-++|..|+|||.||+++
T Consensus 565 ~~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~L 616 (852)
T TIGR03345 565 AERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALAL 616 (852)
T ss_pred cCeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHH
Confidence 357899999999998776431 11 2557889999999999999863
No 182
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=92.55 E-value=0.12 Score=45.58 Aligned_cols=43 Identities=30% Similarity=0.336 Sum_probs=32.3
Q ss_pred ccccccchhHHHHHHHhhhc---CCCeEEEEEEcCCCCcHHHHhcc
Q 047923 147 NQLVGRESRVEIIESLLAAE---SKDVYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 147 ~~~vG~d~~~~~~~~~l~~~---~~~~~vi~i~G~gGiGKTTla~~ 189 (190)
.++.--...++++..||... ....+++-+.|.+|.||||..+.
T Consensus 19 ~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~ 64 (519)
T PF03215_consen 19 DELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKV 64 (519)
T ss_pred HHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHH
Confidence 34555566788888888752 22367999999999999999875
No 183
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=92.53 E-value=0.069 Score=46.88 Aligned_cols=20 Identities=25% Similarity=0.227 Sum_probs=17.7
Q ss_pred eEEEEEEcCCCCcHHHHhcc
Q 047923 170 VYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~ 189 (190)
=..++|+|..|.|||||++.
T Consensus 361 G~~vaIvG~SGsGKSTLl~l 380 (529)
T TIGR02868 361 GERVAILGPSGSGKSTLLML 380 (529)
T ss_pred CCEEEEECCCCCCHHHHHHH
Confidence 35789999999999999985
No 184
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=92.52 E-value=0.072 Score=44.33 Aligned_cols=20 Identities=40% Similarity=0.544 Sum_probs=17.9
Q ss_pred eEEEEEEcCCCCcHHHHhcc
Q 047923 170 VYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~ 189 (190)
=.++||.|..|.|||||.+.
T Consensus 67 Gei~gLlGpNGaGKSTLl~~ 86 (340)
T PRK13536 67 GECFGLLGPNGAGKSTIARM 86 (340)
T ss_pred CCEEEEECCCCCCHHHHHHH
Confidence 46899999999999999875
No 185
>PHA02244 ATPase-like protein
Probab=92.48 E-value=0.1 Score=43.86 Aligned_cols=18 Identities=28% Similarity=0.226 Sum_probs=15.3
Q ss_pred EEEEcCCCCcHHHHhccC
Q 047923 173 LGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 173 i~i~G~gGiGKTTla~~v 190 (190)
+-|+|..|+|||+||+++
T Consensus 122 VLL~GppGtGKTtLA~aL 139 (383)
T PHA02244 122 VFLKGGAGSGKNHIAEQI 139 (383)
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 446899999999999864
No 186
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=92.47 E-value=0.07 Score=47.97 Aligned_cols=20 Identities=35% Similarity=0.381 Sum_probs=17.8
Q ss_pred EEEEEEcCCCCcHHHHhccC
Q 047923 171 YILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~~v 190 (190)
.+++|+|-.|.|||||++.+
T Consensus 351 e~~~lvG~nGsGKSTLlk~i 370 (623)
T PRK10261 351 ETLSLVGESGSGKSTTGRAL 370 (623)
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 57899999999999999863
No 187
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=92.47 E-value=0.075 Score=46.75 Aligned_cols=20 Identities=35% Similarity=0.370 Sum_probs=17.8
Q ss_pred EEEEEEcCCCCcHHHHhccC
Q 047923 171 YILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~~v 190 (190)
.+++|.|..|.|||||.+.+
T Consensus 313 e~~~i~G~nGsGKSTLlk~l 332 (529)
T PRK15134 313 ETLGLVGESGSGKSTTGLAL 332 (529)
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 57999999999999999853
No 188
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=92.46 E-value=0.12 Score=43.58 Aligned_cols=33 Identities=24% Similarity=0.239 Sum_probs=23.6
Q ss_pred HHHHHHhhhcCCCeEEEEEEcCCCCcHHHHhcc
Q 047923 157 EIIESLLAAESKDVYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 157 ~~~~~~l~~~~~~~~vi~i~G~gGiGKTTla~~ 189 (190)
.++.++|..+-..-.++-|.|-+|+|||||+.+
T Consensus 69 ~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq 101 (372)
T cd01121 69 EELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQ 101 (372)
T ss_pred HHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHH
Confidence 344455654333456889999999999999864
No 189
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=92.44 E-value=0.12 Score=44.66 Aligned_cols=21 Identities=33% Similarity=0.300 Sum_probs=17.9
Q ss_pred eEEEEEEcCCCCcHHHHhccC
Q 047923 170 VYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~v 190 (190)
..-+-|+|..|.|||+|++++
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai 168 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAI 168 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHH
Confidence 456789999999999999864
No 190
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=92.37 E-value=0.079 Score=46.95 Aligned_cols=20 Identities=35% Similarity=0.483 Sum_probs=17.7
Q ss_pred EEEEEEcCCCCcHHHHhccC
Q 047923 171 YILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~~v 190 (190)
.+++|.|..|.|||||.+.+
T Consensus 351 e~~~l~G~NGsGKSTLl~~i 370 (556)
T PRK11819 351 GIVGIIGPNGAGKSTLFKMI 370 (556)
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 57999999999999998853
No 191
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=92.36 E-value=0.077 Score=46.36 Aligned_cols=20 Identities=30% Similarity=0.497 Sum_probs=17.7
Q ss_pred EEEEEEcCCCCcHHHHhccC
Q 047923 171 YILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~~v 190 (190)
.+++|+|..|.|||||.+.+
T Consensus 279 e~~~liG~NGsGKSTLl~~l 298 (501)
T PRK10762 279 EILGVSGLMGAGRTELMKVL 298 (501)
T ss_pred cEEEEecCCCCCHHHHHHHH
Confidence 48999999999999998853
No 192
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=92.26 E-value=0.27 Score=42.48 Aligned_cols=18 Identities=28% Similarity=0.388 Sum_probs=15.9
Q ss_pred EEEEEcCCCCcHHHHhcc
Q 047923 172 ILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 172 vi~i~G~gGiGKTTla~~ 189 (190)
.++|+|.+++|||||..+
T Consensus 217 kV~ivG~~nvGKSSLln~ 234 (449)
T PRK05291 217 KVVIAGRPNVGKSSLLNA 234 (449)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 578999999999999764
No 193
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=92.25 E-value=0.086 Score=46.67 Aligned_cols=20 Identities=35% Similarity=0.501 Sum_probs=17.8
Q ss_pred EEEEEEcCCCCcHHHHhccC
Q 047923 171 YILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~~v 190 (190)
.+++|.|..|.|||||.+.+
T Consensus 349 e~~~l~G~NGsGKSTLl~~l 368 (552)
T TIGR03719 349 GIVGVIGPNGAGKSTLFRMI 368 (552)
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 58999999999999999853
No 194
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=92.25 E-value=0.083 Score=46.48 Aligned_cols=20 Identities=40% Similarity=0.483 Sum_probs=17.8
Q ss_pred EEEEEEcCCCCcHHHHhccC
Q 047923 171 YILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~~v 190 (190)
.+++|.|..|.|||||.+.+
T Consensus 346 e~~~l~G~NGsGKSTLl~~i 365 (530)
T PRK15064 346 ERLAIIGENGVGKTTLLRTL 365 (530)
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 58999999999999999853
No 195
>PLN03073 ABC transporter F family; Provisional
Probab=92.23 E-value=0.085 Score=48.28 Aligned_cols=21 Identities=33% Similarity=0.306 Sum_probs=18.2
Q ss_pred eEEEEEEcCCCCcHHHHhccC
Q 047923 170 VYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~v 190 (190)
=..+||+|-.|.|||||.+.+
T Consensus 203 Ge~~gLvG~NGsGKSTLLr~l 223 (718)
T PLN03073 203 GRHYGLVGRNGTGKTTFLRYM 223 (718)
T ss_pred CCEEEEECCCCCCHHHHHHHH
Confidence 357999999999999998864
No 196
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=92.20 E-value=0.19 Score=41.58 Aligned_cols=30 Identities=33% Similarity=0.386 Sum_probs=21.8
Q ss_pred HHHHhh-hcCCCeEEEEEEcCCCCcHHHHhc
Q 047923 159 IESLLA-AESKDVYILGIWGVGSIGKTTIAR 188 (190)
Q Consensus 159 ~~~~l~-~~~~~~~vi~i~G~gGiGKTTla~ 188 (190)
+..+|. .+=..-+++-|+|.+|.||||||-
T Consensus 43 LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL 73 (321)
T TIGR02012 43 LDLALGVGGLPRGRIIEIYGPESSGKTTLAL 73 (321)
T ss_pred HHHHhcCCCCcCCeEEEEECCCCCCHHHHHH
Confidence 335554 332346788899999999999985
No 197
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=92.20 E-value=0.13 Score=44.48 Aligned_cols=35 Identities=20% Similarity=0.175 Sum_probs=25.3
Q ss_pred hHHHHHHHhhhcCCCeEEEEEEcCCCCcHHHHhcc
Q 047923 155 RVEIIESLLAAESKDVYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 155 ~~~~~~~~l~~~~~~~~vi~i~G~gGiGKTTla~~ 189 (190)
-..++..+|..+-..-.++-|.|-+|+|||||+..
T Consensus 79 Gi~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq 113 (454)
T TIGR00416 79 GFGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQ 113 (454)
T ss_pred CcHHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHH
Confidence 34555566654434456888999999999999864
No 198
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=92.17 E-value=0.079 Score=45.03 Aligned_cols=20 Identities=20% Similarity=-0.046 Sum_probs=17.1
Q ss_pred EEEEEEcCCCCcHHHHhccC
Q 047923 171 YILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~~v 190 (190)
..++|+|.+|.|||||++.+
T Consensus 169 q~~~IvG~~g~GKTtL~~~i 188 (415)
T TIGR00767 169 QRGLIVAPPKAGKTVLLQKI 188 (415)
T ss_pred CEEEEECCCCCChhHHHHHH
Confidence 45789999999999999853
No 199
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=92.12 E-value=0.079 Score=45.13 Aligned_cols=21 Identities=33% Similarity=0.382 Sum_probs=18.1
Q ss_pred eEEEEEEcCCCCcHHHHhccC
Q 047923 170 VYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~v 190 (190)
=.+++|.|..|.|||||.+.+
T Consensus 54 Gei~~LvG~NGsGKSTLLr~I 74 (400)
T PRK10070 54 GEIFVIMGLSGSGKSTMVRLL 74 (400)
T ss_pred CCEEEEECCCCchHHHHHHHH
Confidence 357999999999999998853
No 200
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.11 E-value=0.093 Score=43.48 Aligned_cols=20 Identities=25% Similarity=0.317 Sum_probs=17.8
Q ss_pred EEEEEEcCCCCcHHHHhccC
Q 047923 171 YILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~~v 190 (190)
.+++|+|..|.|||||.+++
T Consensus 109 e~v~IvG~~GsGKSTLl~~L 128 (329)
T PRK14257 109 KVTAFIGPSGCGKSTFLRNL 128 (329)
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 57999999999999999864
No 201
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=92.11 E-value=0.089 Score=45.96 Aligned_cols=20 Identities=20% Similarity=0.536 Sum_probs=17.8
Q ss_pred EEEEEEcCCCCcHHHHhccC
Q 047923 171 YILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~~v 190 (190)
.+++|+|..|.|||||.+.+
T Consensus 280 e~~~iiG~NGsGKSTLlk~l 299 (501)
T PRK11288 280 EIVGLFGLVGAGRSELMKLL 299 (501)
T ss_pred cEEEEEcCCCCCHHHHHHHH
Confidence 58999999999999998853
No 202
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=92.08 E-value=0.085 Score=46.27 Aligned_cols=21 Identities=38% Similarity=0.458 Sum_probs=18.3
Q ss_pred eEEEEEEcCCCCcHHHHhccC
Q 047923 170 VYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~v 190 (190)
..+|+|-|..|.||||+|+.+
T Consensus 284 ~~ii~i~G~sgsGKst~a~~l 304 (512)
T PRK13477 284 QPIIAIDGPAGAGKSTVTRAV 304 (512)
T ss_pred CcEEEEECCCCCCHHHHHHHH
Confidence 357899999999999999863
No 203
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=92.08 E-value=0.43 Score=41.24 Aligned_cols=18 Identities=33% Similarity=0.536 Sum_probs=15.7
Q ss_pred EEEEEcCCCCcHHHHhcc
Q 047923 172 ILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 172 vi~i~G~gGiGKTTla~~ 189 (190)
-+.|+|.+|+|||||..+
T Consensus 205 kVvIvG~~nvGKSSLiN~ 222 (442)
T TIGR00450 205 KLAIVGSPNVGKSSLLNA 222 (442)
T ss_pred EEEEECCCCCcHHHHHHH
Confidence 467999999999999864
No 204
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=92.03 E-value=0.087 Score=46.23 Aligned_cols=20 Identities=40% Similarity=0.596 Sum_probs=17.6
Q ss_pred EEEEEEcCCCCcHHHHhccC
Q 047923 171 YILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~~v 190 (190)
.+++|.|..|.|||||.+.+
T Consensus 311 e~~~l~G~NGsGKSTLl~~l 330 (520)
T TIGR03269 311 EIFGIVGTSGAGKTTLSKII 330 (520)
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 47899999999999999853
No 205
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=92.01 E-value=0.11 Score=32.14 Aligned_cols=18 Identities=33% Similarity=0.357 Sum_probs=15.8
Q ss_pred EEEEEcCCCCcHHHHhcc
Q 047923 172 ILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 172 vi~i~G~gGiGKTTla~~ 189 (190)
+..|.|-.|.|||||..+
T Consensus 25 ~tli~G~nGsGKSTllDA 42 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDA 42 (62)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 678999999999999765
No 206
>PRK00098 GTPase RsgA; Reviewed
Probab=92.01 E-value=0.092 Score=42.86 Aligned_cols=19 Identities=26% Similarity=0.400 Sum_probs=16.6
Q ss_pred EEEEEEcCCCCcHHHHhcc
Q 047923 171 YILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~~ 189 (190)
.+++++|..|+|||||.++
T Consensus 165 k~~~~~G~sgvGKStlin~ 183 (298)
T PRK00098 165 KVTVLAGQSGVGKSTLLNA 183 (298)
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 4788999999999999764
No 207
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=92.01 E-value=0.083 Score=44.08 Aligned_cols=43 Identities=19% Similarity=0.285 Sum_probs=29.7
Q ss_pred cccccchhHHHHHHHhhhc--C---------CCeEEEEEEcCCCCcHHHHhccC
Q 047923 148 QLVGRESRVEIIESLLAAE--S---------KDVYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 148 ~~vG~d~~~~~~~~~l~~~--~---------~~~~vi~i~G~gGiGKTTla~~v 190 (190)
++=|.+.+.+++.+-.... + +.-.=+=+||.+|.|||-|||+|
T Consensus 152 dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAV 205 (406)
T COG1222 152 DIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAV 205 (406)
T ss_pred hccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHH
Confidence 3447888888887765431 1 11233447999999999999986
No 208
>PRK09866 hypothetical protein; Provisional
Probab=92.00 E-value=0.15 Score=45.86 Aligned_cols=38 Identities=26% Similarity=0.265 Sum_probs=27.8
Q ss_pred chhHHHHHHHhhhcCCCeEEEEEEcCCCCcHHHHhccC
Q 047923 153 ESRVEIIESLLAAESKDVYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 153 d~~~~~~~~~l~~~~~~~~vi~i~G~gGiGKTTla~~v 190 (190)
..+++.+.+.|..-.....+++|+|..|.|||||.+++
T Consensus 52 ~~ri~~L~~~L~Kv~~~~~~valvG~sgaGKSTLiNaL 89 (741)
T PRK09866 52 AERHAMLNNELRKISRLEMVLAIVGTMKAGKSTTINAI 89 (741)
T ss_pred HHHHHHHHHHHHHHhccceEEEEECCCCCCHHHHHHHH
Confidence 44566666666543334588999999999999998763
No 209
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=92.00 E-value=0.093 Score=47.38 Aligned_cols=21 Identities=24% Similarity=0.363 Sum_probs=18.3
Q ss_pred eEEEEEEcCCCCcHHHHhccC
Q 047923 170 VYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~v 190 (190)
=.+++|+|..|.|||||.+.+
T Consensus 338 Ge~~~l~G~NGsGKSTLlk~l 358 (638)
T PRK10636 338 GSRIGLLGRNGAGKSTLIKLL 358 (638)
T ss_pred CCEEEEECCCCCCHHHHHHHH
Confidence 358999999999999998853
No 210
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=91.95 E-value=0.085 Score=45.91 Aligned_cols=20 Identities=45% Similarity=0.544 Sum_probs=17.8
Q ss_pred EEEEEEcCCCCcHHHHhccC
Q 047923 171 YILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~~v 190 (190)
..+||+|..|.|||||||.+
T Consensus 363 ~~lgIIGPSgSGKSTLaR~l 382 (580)
T COG4618 363 EALGIIGPSGSGKSTLARLL 382 (580)
T ss_pred ceEEEECCCCccHHHHHHHH
Confidence 57899999999999999863
No 211
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=91.95 E-value=0.098 Score=45.22 Aligned_cols=21 Identities=33% Similarity=0.409 Sum_probs=18.6
Q ss_pred CeEEEEEEcCCCCcHHHHhcc
Q 047923 169 DVYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 169 ~~~vi~i~G~gGiGKTTla~~ 189 (190)
.-.++-+.|.+|+||||+|..
T Consensus 254 ~p~vil~~G~~G~GKSt~a~~ 274 (475)
T PRK12337 254 RPLHVLIGGVSGVGKSVLASA 274 (475)
T ss_pred CCeEEEEECCCCCCHHHHHHH
Confidence 368899999999999999975
No 212
>PRK08181 transposase; Validated
Probab=91.92 E-value=0.082 Score=42.58 Aligned_cols=20 Identities=30% Similarity=0.257 Sum_probs=17.1
Q ss_pred EEEEEEcCCCCcHHHHhccC
Q 047923 171 YILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~~v 190 (190)
.-+-++|.+|.|||.||.++
T Consensus 107 ~nlll~Gp~GtGKTHLa~Ai 126 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAI 126 (269)
T ss_pred ceEEEEecCCCcHHHHHHHH
Confidence 34789999999999999864
No 213
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=91.90 E-value=0.097 Score=45.55 Aligned_cols=20 Identities=25% Similarity=0.182 Sum_probs=17.6
Q ss_pred EEEEEEcCCCCcHHHHhccC
Q 047923 171 YILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~~v 190 (190)
.+++|.|-.|.|||||.+.+
T Consensus 287 e~~~i~G~NGsGKSTLl~~l 306 (490)
T PRK10938 287 EHWQIVGPNGAGKSTLLSLI 306 (490)
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 47899999999999998853
No 214
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=91.90 E-value=0.13 Score=42.42 Aligned_cols=35 Identities=23% Similarity=0.283 Sum_probs=25.8
Q ss_pred hHHHHHHHhhhcCCCeEEEEEEcCCCCcHHHHhcc
Q 047923 155 RVEIIESLLAAESKDVYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 155 ~~~~~~~~l~~~~~~~~vi~i~G~gGiGKTTla~~ 189 (190)
-...+..+|..+-..-.++-|+|-+|.||||||..
T Consensus 81 g~~~lD~ll~gGi~~g~i~~i~G~~g~GKT~l~~~ 115 (316)
T TIGR02239 81 GSKELDKLLGGGIETGSITEIFGEFRTGKTQLCHT 115 (316)
T ss_pred CCHHHHHHhcCCCCCCeEEEEECCCCCCcCHHHHH
Confidence 34455566655444578899999999999999863
No 215
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=91.86 E-value=0.19 Score=36.60 Aligned_cols=20 Identities=25% Similarity=0.552 Sum_probs=16.9
Q ss_pred eEEEEEEcCCCCcHHHHhcc
Q 047923 170 VYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~ 189 (190)
...++++|.+|+||+||..+
T Consensus 100 ~~~~~~~G~~~~GKstlin~ 119 (155)
T cd01849 100 SITVGVIGYPNVGKSSVINA 119 (155)
T ss_pred CcEEEEEccCCCCHHHHHHH
Confidence 45688999999999998754
No 216
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=91.86 E-value=0.1 Score=45.61 Aligned_cols=21 Identities=33% Similarity=0.450 Sum_probs=18.2
Q ss_pred eEEEEEEcCCCCcHHHHhccC
Q 047923 170 VYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~v 190 (190)
-.+++|.|..|.|||||.+.+
T Consensus 286 Ge~~~l~G~NGsGKSTLl~~l 306 (500)
T TIGR02633 286 GEILGVAGLVGAGRTELVQAL 306 (500)
T ss_pred CcEEEEeCCCCCCHHHHHHHH
Confidence 358999999999999998753
No 217
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=91.83 E-value=0.098 Score=47.16 Aligned_cols=20 Identities=25% Similarity=0.328 Sum_probs=17.6
Q ss_pred EEEEEEcCCCCcHHHHhccC
Q 047923 171 YILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~~v 190 (190)
.+++|+|..|.|||||.+.+
T Consensus 346 e~~~l~G~NGsGKSTLlk~l 365 (635)
T PRK11147 346 DKIALIGPNGCGKTTLLKLM 365 (635)
T ss_pred CEEEEECCCCCcHHHHHHHH
Confidence 47999999999999998853
No 218
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=91.82 E-value=0.13 Score=42.32 Aligned_cols=20 Identities=25% Similarity=0.461 Sum_probs=17.0
Q ss_pred CeEEEEEEc-CCCCcHHHHhc
Q 047923 169 DVYILGIWG-VGSIGKTTIAR 188 (190)
Q Consensus 169 ~~~vi~i~G-~gGiGKTTla~ 188 (190)
..++|+++| -||+||||+|-
T Consensus 92 ~~~vIav~~~KGGvGkTT~a~ 112 (322)
T TIGR03815 92 RGVVVAVIGGRGGAGASTLAA 112 (322)
T ss_pred CceEEEEEcCCCCCcHHHHHH
Confidence 368999995 79999999985
No 219
>PTZ00035 Rad51 protein; Provisional
Probab=91.82 E-value=0.15 Score=42.37 Aligned_cols=33 Identities=21% Similarity=0.303 Sum_probs=24.6
Q ss_pred HHHHHHhhhcCCCeEEEEEEcCCCCcHHHHhcc
Q 047923 157 EIIESLLAAESKDVYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 157 ~~~~~~l~~~~~~~~vi~i~G~gGiGKTTla~~ 189 (190)
..+.++|..+-..-.++-|+|-.|.|||||+..
T Consensus 105 ~~LD~lLgGGi~~G~iteI~G~~GsGKT~l~~~ 137 (337)
T PTZ00035 105 TQLDKLLGGGIETGSITELFGEFRTGKTQLCHT 137 (337)
T ss_pred HHHHHHhCCCCCCCeEEEEECCCCCchhHHHHH
Confidence 445566654434467899999999999999863
No 220
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=91.81 E-value=0.085 Score=43.61 Aligned_cols=31 Identities=19% Similarity=0.105 Sum_probs=21.3
Q ss_pred HHHHHHHhhhcCCCeEEEEEEcCCCCcHHHHhccC
Q 047923 156 VEIIESLLAAESKDVYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 156 ~~~~~~~l~~~~~~~~vi~i~G~gGiGKTTla~~v 190 (190)
...+...|..+ +-|-|.|.+|.||||+|+++
T Consensus 54 ~~~vl~~l~~~----~~ilL~G~pGtGKTtla~~l 84 (327)
T TIGR01650 54 TKAICAGFAYD----RRVMVQGYHGTGKSTHIEQI 84 (327)
T ss_pred HHHHHHHHhcC----CcEEEEeCCCChHHHHHHHH
Confidence 34444445332 24778999999999999853
No 221
>PF11868 DUF3388: Protein of unknown function (DUF3388); InterPro: IPR024514 This domain is found in a family of bacterial proteins that are functionally uncharacterised. Proteins in this family are typically between 261 to 275 amino acids in length and have a N-terminal ACT domain.
Probab=91.80 E-value=0.15 Score=37.70 Aligned_cols=27 Identities=26% Similarity=0.485 Sum_probs=19.6
Q ss_pred HHHHhhhcCCCeEEEEEEcCCCCcHHHHh
Q 047923 159 IESLLAAESKDVYILGIWGVGSIGKTTIA 187 (190)
Q Consensus 159 ~~~~l~~~~~~~~vi~i~G~gGiGKTTla 187 (190)
+.+++.. ++-.+|||.||+-+|||--+
T Consensus 45 maEl~K~--~Gh~lIGiRGmPRVGKTEsi 71 (192)
T PF11868_consen 45 MAELFKE--EGHKLIGIRGMPRVGKTESI 71 (192)
T ss_pred HHHHHHh--cCceEEeecCCCccCchhHH
Confidence 3344443 35789999999999999643
No 222
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=91.73 E-value=0.73 Score=39.52 Aligned_cols=40 Identities=18% Similarity=0.192 Sum_probs=26.2
Q ss_pred ccccchhHHHHHHHhhhcCCCeEEEEEEcCCCCcHHHHhcc
Q 047923 149 LVGRESRVEIIESLLAAESKDVYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 149 ~vG~d~~~~~~~~~l~~~~~~~~vi~i~G~gGiGKTTla~~ 189 (190)
..|.......+.+++. +-..-.++-|-|.+|+||||+|..
T Consensus 175 ~~gi~tG~~~LD~~~~-G~~~G~l~vi~g~pg~GKT~~~l~ 214 (434)
T TIGR00665 175 ITGVPTGFTDLDKLTS-GLQPSDLIILAARPSMGKTAFALN 214 (434)
T ss_pred CCcccCCchhhHhhcC-CCCCCeEEEEEeCCCCChHHHHHH
Confidence 4455555555655553 222345777889999999999853
No 223
>PRK08840 replicative DNA helicase; Provisional
Probab=91.72 E-value=1 Score=39.21 Aligned_cols=39 Identities=21% Similarity=0.203 Sum_probs=24.5
Q ss_pred ccccchhHHHHHHHhhhcCCCeEEEEEEcCCCCcHHHHhc
Q 047923 149 LVGRESRVEIIESLLAAESKDVYILGIWGVGSIGKTTIAR 188 (190)
Q Consensus 149 ~vG~d~~~~~~~~~l~~~~~~~~vi~i~G~gGiGKTTla~ 188 (190)
+.|...-...+.+++.. -..-.++-|-|.+|+||||+|-
T Consensus 197 ~~gi~TG~~~LD~~~~G-~~~g~LiviaarPg~GKTafal 235 (464)
T PRK08840 197 VTGVDTGFTDLNKKTAG-LQGSDLIIVAARPSMGKTTFAM 235 (464)
T ss_pred CCCcCCCcHHHHHhhcC-CCCCceEEEEeCCCCchHHHHH
Confidence 45666555555554421 1123456677999999999973
No 224
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=91.71 E-value=0.096 Score=43.49 Aligned_cols=20 Identities=40% Similarity=0.257 Sum_probs=17.2
Q ss_pred eEEEEEEcCCCCcHHHHhcc
Q 047923 170 VYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~ 189 (190)
-..|-|.|..|.||||+.++
T Consensus 160 ~~nili~G~tgSGKTTll~a 179 (332)
T PRK13900 160 KKNIIISGGTSTGKTTFTNA 179 (332)
T ss_pred CCcEEEECCCCCCHHHHHHH
Confidence 34588999999999999875
No 225
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=91.69 E-value=0.22 Score=40.68 Aligned_cols=32 Identities=25% Similarity=0.322 Sum_probs=22.6
Q ss_pred HHHHHhhhcCCCeEEEEEEcCCCCcHHHHhcc
Q 047923 158 IIESLLAAESKDVYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 158 ~~~~~l~~~~~~~~vi~i~G~gGiGKTTla~~ 189 (190)
.+..+|..+-..-.++-|+|.+|.||||||-.
T Consensus 83 ~lD~~l~GGi~~g~i~ei~G~~g~GKT~l~~~ 114 (310)
T TIGR02236 83 ELDELLGGGIETQAITEVFGEFGSGKTQICHQ 114 (310)
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHH
Confidence 34455553323357888999999999999853
No 226
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=91.68 E-value=0.17 Score=41.61 Aligned_cols=32 Identities=19% Similarity=0.387 Sum_probs=23.4
Q ss_pred HHHHHHhhhcCCCeEEEEEEcCCCCcHHHHhc
Q 047923 157 EIIESLLAAESKDVYILGIWGVGSIGKTTIAR 188 (190)
Q Consensus 157 ~~~~~~l~~~~~~~~vi~i~G~gGiGKTTla~ 188 (190)
..+.++|..+-..-++.=|+|.+|.||||||-
T Consensus 83 ~~LD~lLgGGi~~G~iteI~G~~GsGKTql~l 114 (313)
T TIGR02238 83 QALDGILGGGIESMSITEVFGEFRCGKTQLSH 114 (313)
T ss_pred HHHHHHhCCCCcCCeEEEEECCCCCCcCHHHH
Confidence 34445665443446788899999999999985
No 227
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=91.63 E-value=0.12 Score=42.71 Aligned_cols=20 Identities=30% Similarity=0.227 Sum_probs=17.0
Q ss_pred EEEEEEcCCCCcHHHHhccC
Q 047923 171 YILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~~v 190 (190)
..+-|.|..|.||||+++++
T Consensus 149 ~~ilI~G~tGSGKTTll~aL 168 (319)
T PRK13894 149 RNILVIGGTGSGKTTLVNAI 168 (319)
T ss_pred CeEEEECCCCCCHHHHHHHH
Confidence 45778899999999998753
No 228
>COG4240 Predicted kinase [General function prediction only]
Probab=91.59 E-value=0.098 Score=41.18 Aligned_cols=21 Identities=33% Similarity=0.466 Sum_probs=18.3
Q ss_pred CeEEEEEEcCCCCcHHHHhcc
Q 047923 169 DVYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 169 ~~~vi~i~G~gGiGKTTla~~ 189 (190)
.--++||.|.-|.|||||+-+
T Consensus 49 rPli~gisGpQGSGKStls~~ 69 (300)
T COG4240 49 RPLIVGISGPQGSGKSTLSAL 69 (300)
T ss_pred CceEEEeecCCCCchhhHHHH
Confidence 356899999999999999864
No 229
>PRK06851 hypothetical protein; Provisional
Probab=91.57 E-value=0.49 Score=39.84 Aligned_cols=21 Identities=19% Similarity=0.098 Sum_probs=18.1
Q ss_pred eEEEEEEcCCCCcHHHHhccC
Q 047923 170 VYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~v 190 (190)
-+++-|-|.+|+|||||++.+
T Consensus 214 ~~~~~i~G~pG~GKstl~~~i 234 (367)
T PRK06851 214 KNRYFLKGRPGTGKSTMLKKI 234 (367)
T ss_pred ceEEEEeCCCCCcHHHHHHHH
Confidence 467889999999999998753
No 230
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=91.54 E-value=0.1 Score=42.86 Aligned_cols=20 Identities=40% Similarity=0.401 Sum_probs=18.1
Q ss_pred EEEEEEcCCCCcHHHHhccC
Q 047923 171 YILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~~v 190 (190)
..++|||.+|.|||-||++|
T Consensus 167 kg~ll~GppGtGKTlla~~V 186 (388)
T KOG0651|consen 167 KGLLLYGPPGTGKTLLARAV 186 (388)
T ss_pred ceeEEeCCCCCchhHHHHHH
Confidence 57899999999999999875
No 231
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=91.53 E-value=0.12 Score=43.19 Aligned_cols=21 Identities=24% Similarity=0.297 Sum_probs=17.7
Q ss_pred eEEEEEEcCCCCcHHHHhccC
Q 047923 170 VYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~v 190 (190)
-..+-|.|-.|.||||+++++
T Consensus 162 ~~nilI~G~tGSGKTTll~aL 182 (344)
T PRK13851 162 RLTMLLCGPTGSGKTTMSKTL 182 (344)
T ss_pred CCeEEEECCCCccHHHHHHHH
Confidence 345889999999999999863
No 232
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=91.48 E-value=0.24 Score=40.95 Aligned_cols=31 Identities=32% Similarity=0.379 Sum_probs=22.0
Q ss_pred HHHHhh-hcCCCeEEEEEEcCCCCcHHHHhcc
Q 047923 159 IESLLA-AESKDVYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 159 ~~~~l~-~~~~~~~vi~i~G~gGiGKTTla~~ 189 (190)
+..+|. .+=..-+++=|+|.+|.||||||-.
T Consensus 43 LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~ 74 (325)
T cd00983 43 LDIALGIGGYPKGRIIEIYGPESSGKTTLALH 74 (325)
T ss_pred HHHHhcCCCccCCeEEEEECCCCCCHHHHHHH
Confidence 345555 3323356788999999999999853
No 233
>PRK08760 replicative DNA helicase; Provisional
Probab=91.47 E-value=1 Score=39.33 Aligned_cols=39 Identities=18% Similarity=0.205 Sum_probs=25.6
Q ss_pred ccccchhHHHHHHHhhhcCCCeEEEEEEcCCCCcHHHHhc
Q 047923 149 LVGRESRVEIIESLLAAESKDVYILGIWGVGSIGKTTIAR 188 (190)
Q Consensus 149 ~vG~d~~~~~~~~~l~~~~~~~~vi~i~G~gGiGKTTla~ 188 (190)
..|...-...+.+++. +-..-.++-|-|.+|+||||+|-
T Consensus 209 ~~Gi~TG~~~LD~~t~-G~~~G~LivIaarPg~GKTafal 247 (476)
T PRK08760 209 ITGLPTGYNDFDAMTA-GLQPTDLIILAARPAMGKTTFAL 247 (476)
T ss_pred CCcccCCcHHHHHHhc-CCCCCceEEEEeCCCCChhHHHH
Confidence 4455555666655442 21224567788999999999985
No 234
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=91.47 E-value=0.1 Score=44.68 Aligned_cols=20 Identities=35% Similarity=0.353 Sum_probs=16.7
Q ss_pred EEEEEEcCCCCcHHHHhccC
Q 047923 171 YILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~~v 190 (190)
+-+-++|.+|+||||||+++
T Consensus 48 ~~ILLiGppG~GKT~lAraL 67 (441)
T TIGR00390 48 KNILMIGPTGVGKTEIARRL 67 (441)
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 34668999999999999864
No 235
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=91.47 E-value=0.087 Score=44.81 Aligned_cols=20 Identities=35% Similarity=0.443 Sum_probs=17.9
Q ss_pred EEEEEEcCCCCcHHHHhccC
Q 047923 171 YILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~~v 190 (190)
..+||+|-.|.|||||++++
T Consensus 314 qTlGlVGESGSGKsTlG~al 333 (534)
T COG4172 314 QTLGLVGESGSGKSTLGLAL 333 (534)
T ss_pred CeEEEEecCCCCcchHHHHH
Confidence 57999999999999999863
No 236
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=91.45 E-value=0.21 Score=40.23 Aligned_cols=30 Identities=10% Similarity=0.176 Sum_probs=23.2
Q ss_pred cchHHHHHHhhcccceEEEecCCCcCchhh
Q 047923 18 EISESIAYAIESPAISVIIFSEGYPFSRWC 47 (190)
Q Consensus 18 ~~~~~l~~ai~~s~~~ivv~S~~y~~S~wc 47 (190)
....++.++++++++.+.|+.-....+..+
T Consensus 10 k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~ 39 (276)
T TIGR03596 10 KARREIKEKLKLVDVVIEVLDARIPLSSRN 39 (276)
T ss_pred HHHHHHHHHHhhCCEEEEEEeCCCCCCCCC
Confidence 345788999999999999998765555444
No 237
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=91.40 E-value=0.12 Score=45.58 Aligned_cols=21 Identities=33% Similarity=0.477 Sum_probs=18.3
Q ss_pred eEEEEEEcCCCCcHHHHhccC
Q 047923 170 VYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~v 190 (190)
-.+++|.|..|.|||||.+.+
T Consensus 50 GEivgIiGpNGSGKSTLLkiL 70 (549)
T PRK13545 50 GEIVGIIGLNGSGKSTLSNLI 70 (549)
T ss_pred CCEEEEEcCCCCCHHHHHHHH
Confidence 358999999999999999853
No 238
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=91.36 E-value=0.28 Score=39.32 Aligned_cols=36 Identities=31% Similarity=0.325 Sum_probs=23.4
Q ss_pred ccch-hHHHHHHHhhhcCCCeEEEEEEcCCCCcHHHHhcc
Q 047923 151 GRES-RVEIIESLLAAESKDVYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 151 G~d~-~~~~~~~~l~~~~~~~~vi~i~G~gGiGKTTla~~ 189 (190)
|... ..+.+..++... -.++.|.|..|.||||+.++
T Consensus 63 g~~~~~~~~l~~~~~~~---~GlilisG~tGSGKTT~l~a 99 (264)
T cd01129 63 GLKPENLEIFRKLLEKP---HGIILVTGPTGSGKTTTLYS 99 (264)
T ss_pred CCCHHHHHHHHHHHhcC---CCEEEEECCCCCcHHHHHHH
Confidence 4443 333444444322 34688999999999999874
No 239
>PLN03073 ABC transporter F family; Provisional
Probab=91.34 E-value=0.12 Score=47.38 Aligned_cols=20 Identities=30% Similarity=0.398 Sum_probs=17.7
Q ss_pred EEEEEEcCCCCcHHHHhccC
Q 047923 171 YILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~~v 190 (190)
.+++|+|..|.|||||.+.+
T Consensus 536 e~i~LvG~NGsGKSTLLk~L 555 (718)
T PLN03073 536 SRIAMVGPNGIGKSTILKLI 555 (718)
T ss_pred CEEEEECCCCCcHHHHHHHH
Confidence 47999999999999998853
No 240
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=91.32 E-value=0.39 Score=38.74 Aligned_cols=20 Identities=30% Similarity=0.411 Sum_probs=17.6
Q ss_pred eEEEEEEcCCCCcHHHHhcc
Q 047923 170 VYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~ 189 (190)
...+.++|-+|.||||+++.
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~ 94 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAK 94 (270)
T ss_pred CCEEEEECCCCCcHHHHHHH
Confidence 46899999999999998864
No 241
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=91.32 E-value=0.11 Score=46.05 Aligned_cols=20 Identities=30% Similarity=0.330 Sum_probs=17.6
Q ss_pred EEEEEEcCCCCcHHHHhccC
Q 047923 171 YILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~~v 190 (190)
..++|+|..|.|||||++.+
T Consensus 370 ~~~aIvG~sGsGKSTLl~ll 389 (582)
T PRK11176 370 KTVALVGRSGSGKSTIANLL 389 (582)
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 56899999999999999853
No 242
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=91.29 E-value=0.17 Score=46.09 Aligned_cols=44 Identities=23% Similarity=0.268 Sum_probs=32.9
Q ss_pred ccccccchhHHHHHHHhhhcCCCeEEEEEEcCCCCcHHHHhccC
Q 047923 147 NQLVGRESRVEIIESLLAAESKDVYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 147 ~~~vG~d~~~~~~~~~l~~~~~~~~vi~i~G~gGiGKTTla~~v 190 (190)
..++|....++.+.+.+..-...-.-|=|.|-.|.|||++|+++
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~i 419 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAI 419 (686)
T ss_pred cceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHH
Confidence 46999998888887766542222234568899999999999864
No 243
>CHL00195 ycf46 Ycf46; Provisional
Probab=91.25 E-value=0.21 Score=43.70 Aligned_cols=44 Identities=16% Similarity=0.132 Sum_probs=28.2
Q ss_pred ccccccchhHHHHHHHhh---h-----cCCCeEEEEEEcCCCCcHHHHhccC
Q 047923 147 NQLVGRESRVEIIESLLA---A-----ESKDVYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 147 ~~~vG~d~~~~~~~~~l~---~-----~~~~~~vi~i~G~gGiGKTTla~~v 190 (190)
.++-|.+.-++.+.+... . +-..-+-+=++|.+|.|||.+|+++
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkai 279 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAI 279 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHH
Confidence 456687766665544211 1 1112345668999999999999874
No 244
>PRK12288 GTPase RsgA; Reviewed
Probab=91.24 E-value=0.2 Score=41.81 Aligned_cols=30 Identities=27% Similarity=0.352 Sum_probs=21.0
Q ss_pred HHHHHHHhhhcCCCeEEEEEEcCCCCcHHHHhccC
Q 047923 156 VEIIESLLAAESKDVYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 156 ~~~~~~~l~~~~~~~~vi~i~G~gGiGKTTla~~v 190 (190)
++++.++|.. .++.++|..|+|||||..++
T Consensus 196 ideL~~~L~~-----ki~~~vG~sgVGKSTLiN~L 225 (347)
T PRK12288 196 LEELEAALTG-----RISIFVGQSGVGKSSLINAL 225 (347)
T ss_pred HHHHHHHHhh-----CCEEEECCCCCCHHHHHHHh
Confidence 4455555542 24679999999999998653
No 245
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=91.24 E-value=0.12 Score=43.76 Aligned_cols=21 Identities=29% Similarity=0.346 Sum_probs=18.1
Q ss_pred eEEEEEEcCCCCcHHHHhccC
Q 047923 170 VYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~v 190 (190)
=.+++|.|..|.|||||.+.+
T Consensus 50 Gei~~I~G~nGsGKSTLlr~L 70 (382)
T TIGR03415 50 GEICVLMGLSGSGKSSLLRAV 70 (382)
T ss_pred CCEEEEECCCCCcHHHHHHHH
Confidence 357999999999999999853
No 246
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=91.22 E-value=0.27 Score=39.63 Aligned_cols=21 Identities=33% Similarity=0.219 Sum_probs=18.6
Q ss_pred CeEEEEEEcCCCCcHHHHhcc
Q 047923 169 DVYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 169 ~~~vi~i~G~gGiGKTTla~~ 189 (190)
+..-++|+|..|.|||||.+.
T Consensus 110 ~~~~~~i~g~~g~GKttl~~~ 130 (270)
T TIGR02858 110 RVLNTLIISPPQCGKTTLLRD 130 (270)
T ss_pred CeeEEEEEcCCCCCHHHHHHH
Confidence 467899999999999999875
No 247
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=91.20 E-value=0.11 Score=44.44 Aligned_cols=20 Identities=35% Similarity=0.353 Sum_probs=16.8
Q ss_pred EEEEEEcCCCCcHHHHhccC
Q 047923 171 YILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~~v 190 (190)
.-+-++|..|+||||||+++
T Consensus 51 ~~ILliGp~G~GKT~LAr~L 70 (443)
T PRK05201 51 KNILMIGPTGVGKTEIARRL 70 (443)
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 34678999999999999863
No 248
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=91.19 E-value=0.11 Score=44.81 Aligned_cols=21 Identities=29% Similarity=0.294 Sum_probs=17.8
Q ss_pred eEEEEEEcCCCCcHHHHhccC
Q 047923 170 VYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~v 190 (190)
..-+-|||-.|.|||+|++++
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai 150 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSI 150 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHH
Confidence 345889999999999999864
No 249
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=91.19 E-value=0.18 Score=44.20 Aligned_cols=46 Identities=22% Similarity=0.350 Sum_probs=34.9
Q ss_pred ccccccccchhHHHHHHHhhhcCCCeEEEEEEcCCCCcHHHHhccC
Q 047923 145 KENQLVGRESRVEIIESLLAAESKDVYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 145 ~~~~~vG~d~~~~~~~~~l~~~~~~~~vi~i~G~gGiGKTTla~~v 190 (190)
....++|....++.+.+.+..-...-.-|=|.|-.|.|||++|+++
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~i 230 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAI 230 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHH
Confidence 3457999999999888877653322234558999999999999864
No 250
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=91.17 E-value=0.26 Score=36.86 Aligned_cols=20 Identities=20% Similarity=0.532 Sum_probs=16.7
Q ss_pred eEEEEEEcCCCCcHHHHhcc
Q 047923 170 VYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~ 189 (190)
.-.++++|++++||+||-.+
T Consensus 117 ~~~~~~vG~pnvGKSslin~ 136 (172)
T cd04178 117 SITVGVVGFPNVGKSSLINS 136 (172)
T ss_pred CcEEEEEcCCCCCHHHHHHH
Confidence 34688999999999999754
No 251
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=91.12 E-value=0.12 Score=46.89 Aligned_cols=19 Identities=32% Similarity=0.435 Sum_probs=17.2
Q ss_pred EEEEEEcCCCCcHHHHhcc
Q 047923 171 YILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~~ 189 (190)
..++|+|..|.|||||++.
T Consensus 480 e~vaIvG~sGsGKSTLlkl 498 (686)
T TIGR03797 480 EFVAIVGPSGSGKSTLLRL 498 (686)
T ss_pred CEEEEECCCCCCHHHHHHH
Confidence 5789999999999999985
No 252
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=91.08 E-value=0.48 Score=40.97 Aligned_cols=59 Identities=25% Similarity=0.318 Sum_probs=43.5
Q ss_pred HHHHHHHHhhhhhhhhccccccccccchhHHHHHHHhhh--cCCCeEEEEEEcCCCCcHHHHhc
Q 047923 127 KEVVNQILKRLAEVLLCDKENQLVGRESRVEIIESLLAA--ESKDVYILGIWGVGSIGKTTIAR 188 (190)
Q Consensus 127 ~~iv~~v~~~l~~~~~~~~~~~~vG~d~~~~~~~~~l~~--~~~~~~vi~i~G~gGiGKTTla~ 188 (190)
+++..+....+..+ ..+..++||+.++..+.+++.. +.+.-..+-+.|.+|.|||.+-.
T Consensus 133 ke~~~~~~~~l~~t---~~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~ 193 (529)
T KOG2227|consen 133 KEISEQRSESLLNT---APPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLS 193 (529)
T ss_pred HHHHHHHHHHHHhc---CCCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHH
Confidence 33444445455444 4567899999999999999875 34457778889999999998753
No 253
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=91.05 E-value=0.13 Score=45.55 Aligned_cols=19 Identities=26% Similarity=0.352 Sum_probs=17.1
Q ss_pred EEEEEEcCCCCcHHHHhcc
Q 047923 171 YILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~~ 189 (190)
..++|+|..|.|||||++.
T Consensus 356 e~vaiVG~sGsGKSTl~~L 374 (567)
T COG1132 356 EKVAIVGPSGSGKSTLIKL 374 (567)
T ss_pred CEEEEECCCCCCHHHHHHH
Confidence 5688999999999999975
No 254
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=91.04 E-value=0.2 Score=40.97 Aligned_cols=42 Identities=26% Similarity=0.339 Sum_probs=34.0
Q ss_pred cccccccchhHHHHHHHhhhcCCCeEEEEEEcCCCCcHHHHhcc
Q 047923 146 ENQLVGRESRVEIIESLLAAESKDVYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 146 ~~~~vG~d~~~~~~~~~l~~~~~~~~vi~i~G~gGiGKTTla~~ 189 (190)
..+++|.+.-+..+.+-+.. ......-.||.+|.|||+-|.+
T Consensus 35 ~de~~gQe~vV~~L~~a~~~--~~lp~~LFyGPpGTGKTStala 76 (346)
T KOG0989|consen 35 FDELAGQEHVVQVLKNALLR--RILPHYLFYGPPGTGKTSTALA 76 (346)
T ss_pred HHhhcchHHHHHHHHHHHhh--cCCceEEeeCCCCCcHhHHHHH
Confidence 45788999888888777655 3577788999999999998864
No 255
>PRK05973 replicative DNA helicase; Provisional
Probab=91.02 E-value=0.16 Score=40.13 Aligned_cols=20 Identities=15% Similarity=0.004 Sum_probs=16.7
Q ss_pred eEEEEEEcCCCCcHHHHhcc
Q 047923 170 VYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~ 189 (190)
-.++-|.|.+|.||||+|-.
T Consensus 64 Gsl~LIaG~PG~GKT~lalq 83 (237)
T PRK05973 64 GDLVLLGARPGHGKTLLGLE 83 (237)
T ss_pred CCEEEEEeCCCCCHHHHHHH
Confidence 45677899999999999853
No 256
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=91.00 E-value=0.13 Score=46.81 Aligned_cols=20 Identities=30% Similarity=0.330 Sum_probs=17.6
Q ss_pred EEEEEEcCCCCcHHHHhccC
Q 047923 171 YILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~~v 190 (190)
..++|+|..|.|||||++.+
T Consensus 501 ~~vaIvG~SGsGKSTLlklL 520 (708)
T TIGR01193 501 SKTTIVGMSGSGKSTLAKLL 520 (708)
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 57899999999999999853
No 257
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=90.91 E-value=0.13 Score=41.12 Aligned_cols=22 Identities=32% Similarity=0.226 Sum_probs=18.2
Q ss_pred CeEEEEEEcCCCCcHHHHhccC
Q 047923 169 DVYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 169 ~~~vi~i~G~gGiGKTTla~~v 190 (190)
...-+-++|-+|+|||.||.++
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai 125 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAI 125 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHH
Confidence 3456789999999999999764
No 258
>PHA02624 large T antigen; Provisional
Probab=90.88 E-value=0.3 Score=43.68 Aligned_cols=31 Identities=26% Similarity=0.124 Sum_probs=23.7
Q ss_pred HHHhhhcCCCeEEEEEEcCCCCcHHHHhccC
Q 047923 160 ESLLAAESKDVYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 160 ~~~l~~~~~~~~vi~i~G~gGiGKTTla~~v 190 (190)
.+.+..+-.+-+++-++|..|.||||+|.++
T Consensus 421 lk~~l~giPKk~~il~~GPpnTGKTtf~~sL 451 (647)
T PHA02624 421 LKLIVENVPKRRYWLFKGPVNSGKTTLAAAL 451 (647)
T ss_pred HHHHHhcCCCCeEEEEECCCCCCHHHHHHHH
Confidence 3334344456789999999999999999864
No 259
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=90.87 E-value=0.13 Score=45.38 Aligned_cols=19 Identities=26% Similarity=0.373 Sum_probs=16.8
Q ss_pred EEEEEEcCCCCcHHHHhcc
Q 047923 171 YILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~~ 189 (190)
.-|+|+|..|+|||||.+.
T Consensus 349 ~riaiiG~NG~GKSTLlk~ 367 (530)
T COG0488 349 DRIAIVGPNGAGKSTLLKL 367 (530)
T ss_pred CEEEEECCCCCCHHHHHHH
Confidence 4589999999999999875
No 260
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=90.86 E-value=0.25 Score=41.89 Aligned_cols=19 Identities=32% Similarity=0.580 Sum_probs=16.3
Q ss_pred eEEEEEEcCCCCcHHH-Hhc
Q 047923 170 VYILGIWGVGSIGKTT-IAR 188 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTT-la~ 188 (190)
-+++.++|..|+|||| |||
T Consensus 203 ~~vi~LVGPTGVGKTTTlAK 222 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAK 222 (407)
T ss_pred CcEEEEECCCCCcHHHHHHH
Confidence 6899999999999986 454
No 261
>PRK15494 era GTPase Era; Provisional
Probab=90.78 E-value=0.14 Score=42.66 Aligned_cols=21 Identities=24% Similarity=0.268 Sum_probs=17.6
Q ss_pred CeEEEEEEcCCCCcHHHHhcc
Q 047923 169 DVYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 169 ~~~vi~i~G~gGiGKTTla~~ 189 (190)
...-+.|+|.+|+|||||...
T Consensus 51 k~~kV~ivG~~nvGKSTLin~ 71 (339)
T PRK15494 51 KTVSVCIIGRPNSGKSTLLNR 71 (339)
T ss_pred ceeEEEEEcCCCCCHHHHHHH
Confidence 345689999999999999864
No 262
>PRK11823 DNA repair protein RadA; Provisional
Probab=90.73 E-value=0.23 Score=42.98 Aligned_cols=34 Identities=21% Similarity=0.210 Sum_probs=24.3
Q ss_pred HHHHHHHhhhcCCCeEEEEEEcCCCCcHHHHhcc
Q 047923 156 VEIIESLLAAESKDVYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 156 ~~~~~~~l~~~~~~~~vi~i~G~gGiGKTTla~~ 189 (190)
..++.++|..+-..-.++-|.|-+|+|||||+.+
T Consensus 66 i~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq 99 (446)
T PRK11823 66 IGELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQ 99 (446)
T ss_pred cHHHHHHhcCCccCCEEEEEECCCCCCHHHHHHH
Confidence 3455566654333456888999999999999864
No 263
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=90.72 E-value=0.15 Score=40.47 Aligned_cols=19 Identities=26% Similarity=0.365 Sum_probs=16.3
Q ss_pred EEEEEEcCCCCcHHHHhcc
Q 047923 171 YILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~~ 189 (190)
.+..+.|+.|+|||||..+
T Consensus 121 ~~~~~~G~sgvGKStLiN~ 139 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINA 139 (245)
T ss_pred CEEEEECCCCCCHHHHHHH
Confidence 3678999999999999764
No 264
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=90.70 E-value=0.15 Score=43.13 Aligned_cols=20 Identities=35% Similarity=0.421 Sum_probs=17.6
Q ss_pred EEEEEEcCCCCcHHHHhccC
Q 047923 171 YILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~~v 190 (190)
.+++|.|..|.|||||.+.+
T Consensus 41 e~~~LlGpsGsGKSTLLr~I 60 (375)
T PRK09452 41 EFLTLLGPSGCGKTTVLRLI 60 (375)
T ss_pred CEEEEECCCCCcHHHHHHHH
Confidence 47999999999999998753
No 265
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=90.70 E-value=0.15 Score=46.82 Aligned_cols=20 Identities=30% Similarity=0.360 Sum_probs=17.2
Q ss_pred eEEEEEEcCCCCcHHHHhcc
Q 047923 170 VYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~ 189 (190)
-.+++++|..|+||||++..
T Consensus 185 g~Vi~lVGpnGvGKTTTiaK 204 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAK 204 (767)
T ss_pred CeEEEEECCCCCcHHHHHHH
Confidence 36999999999999998753
No 266
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=90.69 E-value=0.15 Score=43.14 Aligned_cols=20 Identities=30% Similarity=0.479 Sum_probs=17.6
Q ss_pred EEEEEEcCCCCcHHHHhccC
Q 047923 171 YILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~~v 190 (190)
.+++|.|..|.|||||.+.+
T Consensus 46 e~~~llGpsGsGKSTLLr~I 65 (377)
T PRK11607 46 EIFALLGASGCGKSTLLRML 65 (377)
T ss_pred CEEEEECCCCCcHHHHHHHH
Confidence 58999999999999998753
No 267
>PRK09354 recA recombinase A; Provisional
Probab=90.68 E-value=0.33 Score=40.54 Aligned_cols=31 Identities=32% Similarity=0.357 Sum_probs=22.3
Q ss_pred HHHHHhh-hcCCCeEEEEEEcCCCCcHHHHhc
Q 047923 158 IIESLLA-AESKDVYILGIWGVGSIGKTTIAR 188 (190)
Q Consensus 158 ~~~~~l~-~~~~~~~vi~i~G~gGiGKTTla~ 188 (190)
.+..+|. .+=..-+++=|+|..|.||||||-
T Consensus 47 ~LD~~LG~GGip~G~IteI~G~~GsGKTtLal 78 (349)
T PRK09354 47 ALDIALGIGGLPRGRIVEIYGPESSGKTTLAL 78 (349)
T ss_pred HHHHHhcCCCCcCCeEEEEECCCCCCHHHHHH
Confidence 3445565 332346788899999999999985
No 268
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=90.66 E-value=0.37 Score=38.28 Aligned_cols=41 Identities=20% Similarity=0.276 Sum_probs=31.0
Q ss_pred ccccccchhHHHHHHHhhhcCCCeEEEEEEcCCCCcHHHHhc
Q 047923 147 NQLVGRESRVEIIESLLAAESKDVYILGIWGVGSIGKTTIAR 188 (190)
Q Consensus 147 ~~~vG~d~~~~~~~~~l~~~~~~~~vi~i~G~gGiGKTTla~ 188 (190)
-++||+|.-.+++...+....-+.. |-++|-.|.|||||..
T Consensus 24 lgyvGidtI~~Qm~~k~mk~GF~FN-IMVVgqSglgkstlin 64 (336)
T KOG1547|consen 24 LGYVGIDTIIEQMRKKTMKTGFDFN-IMVVGQSGLGKSTLIN 64 (336)
T ss_pred cccccHHHHHHHHHHHHHhccCceE-EEEEecCCCCchhhHH
Confidence 3789999999999777665433333 4467999999999964
No 269
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=90.62 E-value=0.15 Score=46.45 Aligned_cols=20 Identities=30% Similarity=0.338 Sum_probs=17.7
Q ss_pred EEEEEEcCCCCcHHHHhccC
Q 047923 171 YILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~~v 190 (190)
..++|+|..|.|||||++.+
T Consensus 506 e~vaIvG~sGsGKSTLlklL 525 (710)
T TIGR03796 506 QRVALVGGSGSGKSTIAKLV 525 (710)
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 57899999999999999853
No 270
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=90.62 E-value=0.41 Score=40.48 Aligned_cols=20 Identities=30% Similarity=0.348 Sum_probs=16.7
Q ss_pred CeEEEEEE-cCCCCcHHHHhc
Q 047923 169 DVYILGIW-GVGSIGKTTIAR 188 (190)
Q Consensus 169 ~~~vi~i~-G~gGiGKTTla~ 188 (190)
..++|+|. .=||+||||+|-
T Consensus 103 ~~~vI~v~n~KGGvGKTT~a~ 123 (387)
T TIGR03453 103 HLQVIAVTNFKGGSGKTTTAA 123 (387)
T ss_pred CceEEEEEccCCCcCHHHHHH
Confidence 46888887 679999999875
No 271
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=90.60 E-value=0.46 Score=43.71 Aligned_cols=44 Identities=20% Similarity=0.383 Sum_probs=34.3
Q ss_pred ccccccchhHHHHHHHhhhc------CC-CeEEEEEEcCCCCcHHHHhccC
Q 047923 147 NQLVGRESRVEIIESLLAAE------SK-DVYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 147 ~~~vG~d~~~~~~~~~l~~~------~~-~~~vi~i~G~gGiGKTTla~~v 190 (190)
..++|.|.-++.+.+-+... .+ .+.+.=..|..|+|||-||+++
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaL 541 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKAL 541 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHH
Confidence 57899999999887776542 12 2667778899999999999864
No 272
>PRK08006 replicative DNA helicase; Provisional
Probab=90.58 E-value=1.5 Score=38.23 Aligned_cols=39 Identities=21% Similarity=0.183 Sum_probs=24.3
Q ss_pred ccccchhHHHHHHHhhhcCCCeEEEEEEcCCCCcHHHHhc
Q 047923 149 LVGRESRVEIIESLLAAESKDVYILGIWGVGSIGKTTIAR 188 (190)
Q Consensus 149 ~vG~d~~~~~~~~~l~~~~~~~~vi~i~G~gGiGKTTla~ 188 (190)
+.|...-...+.+++. +-..-.++-|-|.+|+||||+|-
T Consensus 204 ~~Gi~TG~~~LD~~~~-Gl~~G~LiiIaarPgmGKTafal 242 (471)
T PRK08006 204 VTGVNTGYDDLNKKTA-GLQPSDLIIVAARPSMGKTTFAM 242 (471)
T ss_pred CCcccCCCHHHHHhhc-CCCCCcEEEEEeCCCCCHHHHHH
Confidence 4455555555555432 11123566677999999999974
No 273
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=90.54 E-value=0.3 Score=40.12 Aligned_cols=32 Identities=25% Similarity=0.309 Sum_probs=22.3
Q ss_pred HHHHHhhhcCCCeEEEEEEcCCCCcHHHHhcc
Q 047923 158 IIESLLAAESKDVYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 158 ~~~~~l~~~~~~~~vi~i~G~gGiGKTTla~~ 189 (190)
.+..+|..+-..-.++=|+|.+|.||||||-.
T Consensus 90 ~lD~~l~GGi~~g~vtei~G~~GsGKT~l~~~ 121 (317)
T PRK04301 90 ELDELLGGGIETQSITEFYGEFGSGKTQICHQ 121 (317)
T ss_pred HHHHHhcCCccCCcEEEEECCCCCCHhHHHHH
Confidence 34445543323456788999999999999853
No 274
>PRK08939 primosomal protein DnaI; Reviewed
Probab=90.44 E-value=0.15 Score=41.88 Aligned_cols=21 Identities=29% Similarity=0.251 Sum_probs=17.6
Q ss_pred eEEEEEEcCCCCcHHHHhccC
Q 047923 170 VYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~v 190 (190)
..-+-++|-.|+|||.||.++
T Consensus 156 ~~gl~L~G~~G~GKThLa~Ai 176 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAI 176 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHH
Confidence 455779999999999999864
No 275
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=90.34 E-value=0.17 Score=42.53 Aligned_cols=20 Identities=35% Similarity=0.278 Sum_probs=17.7
Q ss_pred eEEEEEEcCCCCcHHHHhcc
Q 047923 170 VYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~ 189 (190)
-.++.|.|..|.||||+.++
T Consensus 134 ~glilI~GpTGSGKTTtL~a 153 (358)
T TIGR02524 134 EGIVFITGATGSGKSTLLAA 153 (358)
T ss_pred CCEEEEECCCCCCHHHHHHH
Confidence 36899999999999999875
No 276
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=90.33 E-value=0.16 Score=44.83 Aligned_cols=20 Identities=40% Similarity=0.438 Sum_probs=17.7
Q ss_pred eEEEEEEcCCCCcHHHHhcc
Q 047923 170 VYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~ 189 (190)
=..++|+|..|.|||||++.
T Consensus 344 G~~~~ivG~sGsGKSTL~~l 363 (544)
T TIGR01842 344 GEALAIIGPSGSGKSTLARL 363 (544)
T ss_pred CCEEEEECCCCCCHHHHHHH
Confidence 35789999999999999975
No 277
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=90.30 E-value=0.17 Score=43.68 Aligned_cols=20 Identities=35% Similarity=0.546 Sum_probs=17.6
Q ss_pred eEEEEEEcCCCCcHHHHhcc
Q 047923 170 VYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~ 189 (190)
-.|+||.|..|+||||.++-
T Consensus 100 G~V~GilG~NGiGKsTalkI 119 (591)
T COG1245 100 GKVVGILGPNGIGKSTALKI 119 (591)
T ss_pred CcEEEEEcCCCccHHHHHHH
Confidence 46899999999999998763
No 278
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=90.29 E-value=0.3 Score=40.76 Aligned_cols=31 Identities=26% Similarity=0.327 Sum_probs=22.5
Q ss_pred HHHHHhhhcCCCeEEEEEEcCCCCcHHHHhc
Q 047923 158 IIESLLAAESKDVYILGIWGVGSIGKTTIAR 188 (190)
Q Consensus 158 ~~~~~l~~~~~~~~vi~i~G~gGiGKTTla~ 188 (190)
.+.++|..+-..-.+.=|+|.+|.||||||-
T Consensus 114 ~LD~lLgGGi~~G~ItEI~G~~GsGKTql~l 144 (344)
T PLN03187 114 ALDELLGGGIETRCITEAFGEFRSGKTQLAH 144 (344)
T ss_pred hHHhhcCCCCCCCeEEEEecCCCCChhHHHH
Confidence 3445565433345778899999999999985
No 279
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=90.26 E-value=0.17 Score=45.05 Aligned_cols=20 Identities=25% Similarity=0.278 Sum_probs=17.7
Q ss_pred EEEEEEcCCCCcHHHHhccC
Q 047923 171 YILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~~v 190 (190)
..++|+|-.|.|||||++.+
T Consensus 362 ~~v~IvG~sGsGKSTLl~lL 381 (588)
T PRK13657 362 QTVAIVGPTGAGKSTLINLL 381 (588)
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 57899999999999999853
No 280
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=90.25 E-value=0.16 Score=40.26 Aligned_cols=18 Identities=33% Similarity=0.350 Sum_probs=15.4
Q ss_pred EEEEEcCCCCcHHHHhcc
Q 047923 172 ILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 172 vi~i~G~gGiGKTTla~~ 189 (190)
-..|+|..|.|||||.+.
T Consensus 59 ~W~I~G~NGsGKTTLL~l 76 (257)
T COG1119 59 HWAIVGPNGAGKTTLLSL 76 (257)
T ss_pred cEEEECCCCCCHHHHHHH
Confidence 367889999999999874
No 281
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=90.25 E-value=0.28 Score=42.30 Aligned_cols=44 Identities=18% Similarity=0.258 Sum_probs=32.8
Q ss_pred ccccccchhHHHHHHHhhhcCCCeEEEEEEcCCCCcHHHHhccC
Q 047923 147 NQLVGRESRVEIIESLLAAESKDVYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 147 ~~~vG~d~~~~~~~~~l~~~~~~~~vi~i~G~gGiGKTTla~~v 190 (190)
..++|....+..+...+..-...-.-+-|.|-.|.|||++|+++
T Consensus 138 ~~lig~s~~~~~l~~~~~~~~~~~~~vli~Ge~GtGK~~lA~~i 181 (469)
T PRK10923 138 TDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHAL 181 (469)
T ss_pred ccceecCHHHHHHHHHHHHHhccCCeEEEEeCCCCcHHHHHHHH
Confidence 46889988888887777543333333569999999999999863
No 282
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=90.19 E-value=0.32 Score=39.03 Aligned_cols=43 Identities=19% Similarity=0.200 Sum_probs=29.7
Q ss_pred cccccchhHHHHHHHhhh-----------cCCCeEEEEEEcCCCCcHHHHhccC
Q 047923 148 QLVGRESRVEIIESLLAA-----------ESKDVYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 148 ~~vG~d~~~~~~~~~l~~-----------~~~~~~vi~i~G~gGiGKTTla~~v 190 (190)
++=|.|-.++++.+.... +-+.-|=+-+||.+|.|||.||++|
T Consensus 156 diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kav 209 (408)
T KOG0727|consen 156 DIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAV 209 (408)
T ss_pred ccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHH
Confidence 445778777777664332 1123455668999999999999975
No 283
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=90.19 E-value=0.23 Score=43.78 Aligned_cols=45 Identities=22% Similarity=0.137 Sum_probs=33.8
Q ss_pred ccccccccchhHHHHHHHhhh-cCCCeEEEEEEcCCCCcHHHHhccC
Q 047923 145 KENQLVGRESRVEIIESLLAA-ESKDVYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 145 ~~~~~vG~d~~~~~~~~~l~~-~~~~~~vi~i~G~gGiGKTTla~~v 190 (190)
...+++|....+..+.+.+.. ...+.. +=|+|-.|.||++||+++
T Consensus 202 ~f~~~ig~s~~~~~~~~~~~~~A~~~~p-vlI~GE~GtGK~~lA~ai 247 (520)
T PRK10820 202 AFSQIVAVSPKMRQVVEQARKLAMLDAP-LLITGDTGTGKDLLAYAC 247 (520)
T ss_pred cccceeECCHHHHHHHHHHHHHhCCCCC-EEEECCCCccHHHHHHHH
Confidence 456899999888888777653 222344 449999999999999864
No 284
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=90.13 E-value=0.18 Score=44.38 Aligned_cols=22 Identities=14% Similarity=0.185 Sum_probs=19.3
Q ss_pred CCeEEEEEEcCCCCcHHHHhcc
Q 047923 168 KDVYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 168 ~~~~vi~i~G~gGiGKTTla~~ 189 (190)
..-.++-++|.+|.||||+|+.
T Consensus 367 ~~p~LVil~G~pGSGKST~A~~ 388 (526)
T TIGR01663 367 APCEMVIAVGFPGAGKSHFCKK 388 (526)
T ss_pred CCceEEEEECCCCCCHHHHHHH
Confidence 3478999999999999999974
No 285
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=90.10 E-value=0.31 Score=40.64 Aligned_cols=35 Identities=20% Similarity=0.272 Sum_probs=25.2
Q ss_pred hhHHHHHHHhhhcCCCeEEEEEEcCCCCcHHHHhc
Q 047923 154 SRVEIIESLLAAESKDVYILGIWGVGSIGKTTIAR 188 (190)
Q Consensus 154 ~~~~~~~~~l~~~~~~~~vi~i~G~gGiGKTTla~ 188 (190)
.-...+.++|..+-..-.++=|+|.+|+|||+||-
T Consensus 107 tG~~~LD~lL~GG~~~g~i~~i~G~~g~GKT~l~~ 141 (342)
T PLN03186 107 TGSRELDKILEGGIETGSITEIYGEFRTGKTQLCH 141 (342)
T ss_pred CCCHHHHHhhcCCCcCceEEEEECCCCCCccHHHH
Confidence 33445556665443446788899999999999985
No 286
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=89.95 E-value=0.19 Score=44.74 Aligned_cols=20 Identities=25% Similarity=0.323 Sum_probs=17.7
Q ss_pred EEEEEEcCCCCcHHHHhccC
Q 047923 171 YILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~~v 190 (190)
..++|+|-.|.|||||++.+
T Consensus 377 ~~vaIvG~SGsGKSTL~~lL 396 (588)
T PRK11174 377 QRIALVGPSGAGKTSLLNAL 396 (588)
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 67899999999999999753
No 287
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=89.94 E-value=0.18 Score=44.57 Aligned_cols=20 Identities=30% Similarity=0.252 Sum_probs=17.7
Q ss_pred eEEEEEEcCCCCcHHHHhcc
Q 047923 170 VYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~ 189 (190)
-..++|+|..|.|||||++.
T Consensus 349 G~~~aivG~sGsGKSTL~~l 368 (547)
T PRK10522 349 GELLFLIGGNGSGKSTLAML 368 (547)
T ss_pred CCEEEEECCCCCCHHHHHHH
Confidence 35789999999999999975
No 288
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=89.91 E-value=0.14 Score=44.68 Aligned_cols=21 Identities=29% Similarity=0.287 Sum_probs=18.0
Q ss_pred eEEEEEEcCCCCcHHHHhccC
Q 047923 170 VYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~v 190 (190)
.+.+=++|.+|.|||+||+++
T Consensus 276 ~~giLl~GpPGtGKT~lAkav 296 (494)
T COG0464 276 PKGVLLYGPPGTGKTLLAKAV 296 (494)
T ss_pred CCeeEEECCCCCCHHHHHHHH
Confidence 456778999999999999974
No 289
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=89.86 E-value=0.29 Score=40.01 Aligned_cols=43 Identities=26% Similarity=0.291 Sum_probs=28.6
Q ss_pred ccccccch---hHHHHHHHhhhc-CCCeEEEEEEcCCCCcHHHHhcc
Q 047923 147 NQLVGRES---RVEIIESLLAAE-SKDVYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 147 ~~~vG~d~---~~~~~~~~l~~~-~~~~~vi~i~G~gGiGKTTla~~ 189 (190)
...+|-.. -++.+.++|... .....-+-|+|-.|.||||+++.
T Consensus 34 ~rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~r 80 (302)
T PF05621_consen 34 DRWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIER 80 (302)
T ss_pred CCeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHH
Confidence 34566543 344445555543 23467788999999999999874
No 290
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=89.86 E-value=0.51 Score=40.27 Aligned_cols=20 Identities=25% Similarity=0.327 Sum_probs=16.7
Q ss_pred CeEEEEEE-cCCCCcHHHHhc
Q 047923 169 DVYILGIW-GVGSIGKTTIAR 188 (190)
Q Consensus 169 ~~~vi~i~-G~gGiGKTTla~ 188 (190)
+.++|+|. .-||+||||+|-
T Consensus 120 ~~~vIav~n~KGGvGKTTta~ 140 (405)
T PRK13869 120 HLQVIAVTNFKGGSGKTTTSA 140 (405)
T ss_pred CceEEEEEcCCCCCCHHHHHH
Confidence 46899998 569999999874
No 291
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=89.85 E-value=0.26 Score=44.46 Aligned_cols=44 Identities=11% Similarity=0.141 Sum_probs=32.6
Q ss_pred cccccccchhHHHHHHHhhhcC-CCeEEEEEEcCCCCcHHHHhccC
Q 047923 146 ENQLVGRESRVEIIESLLAAES-KDVYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 146 ~~~~vG~d~~~~~~~~~l~~~~-~~~~vi~i~G~gGiGKTTla~~v 190 (190)
...++|....+..+.+.+..-. .+.. |=|+|-.|.||+++|+++
T Consensus 324 ~~~l~g~s~~~~~~~~~~~~~a~~~~p-vli~Ge~GtGK~~~A~~i 368 (638)
T PRK11388 324 FDHMPQDSPQMRRLIHFGRQAAKSSFP-VLLCGEEGVGKALLAQAI 368 (638)
T ss_pred ccceEECCHHHHHHHHHHHHHhCcCCC-EEEECCCCcCHHHHHHHH
Confidence 4568888888888877665422 2344 459999999999999864
No 292
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=89.82 E-value=0.2 Score=44.56 Aligned_cols=19 Identities=37% Similarity=0.539 Sum_probs=17.2
Q ss_pred EEEEEEcCCCCcHHHHhcc
Q 047923 171 YILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~~ 189 (190)
..++|+|..|.|||||++.
T Consensus 342 ~~~~ivG~sGsGKSTLl~l 360 (569)
T PRK10789 342 QMLGICGPTGSGKSTLLSL 360 (569)
T ss_pred CEEEEECCCCCCHHHHHHH
Confidence 5789999999999999975
No 293
>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed
Probab=89.81 E-value=0.17 Score=41.88 Aligned_cols=21 Identities=33% Similarity=0.442 Sum_probs=18.0
Q ss_pred CeEEEEE--EcCCCCcHHHHhcc
Q 047923 169 DVYILGI--WGVGSIGKTTIARA 189 (190)
Q Consensus 169 ~~~vi~i--~G~gGiGKTTla~~ 189 (190)
.+.||+| .++||.|||+++.+
T Consensus 48 ~~pvIsVGNi~vGGtGKTP~v~~ 70 (325)
T PRK00652 48 PVPVIVVGNITVGGTGKTPVVIA 70 (325)
T ss_pred CCCEEEEcCeeCCCCChHHHHHH
Confidence 4778888 99999999999864
No 294
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=89.81 E-value=0.2 Score=44.75 Aligned_cols=20 Identities=30% Similarity=0.290 Sum_probs=17.7
Q ss_pred eEEEEEEcCCCCcHHHHhcc
Q 047923 170 VYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~ 189 (190)
-..++|+|..|.|||||++.
T Consensus 361 G~~~~ivG~sGsGKSTL~~l 380 (585)
T TIGR01192 361 GQTVAIVGPTGAGKTTLINL 380 (585)
T ss_pred CCEEEEECCCCCCHHHHHHH
Confidence 36789999999999999975
No 295
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=89.77 E-value=0.2 Score=43.97 Aligned_cols=21 Identities=19% Similarity=0.167 Sum_probs=18.0
Q ss_pred eEEEEEEcCCCCcHHHHhccC
Q 047923 170 VYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~v 190 (190)
-..++|+|..|.|||||++.+
T Consensus 348 G~~~~ivG~sGsGKSTL~~ll 368 (529)
T TIGR02857 348 GERVALVGPSGAGKSTLLNLL 368 (529)
T ss_pred CCEEEEECCCCCCHHHHHHHH
Confidence 357899999999999999853
No 296
>PRK08506 replicative DNA helicase; Provisional
Probab=89.72 E-value=0.87 Score=39.69 Aligned_cols=40 Identities=18% Similarity=0.204 Sum_probs=26.8
Q ss_pred ccccchhHHHHHHHhhhcCCCeEEEEEEcCCCCcHHHHhcc
Q 047923 149 LVGRESRVEIIESLLAAESKDVYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 149 ~vG~d~~~~~~~~~l~~~~~~~~vi~i~G~gGiGKTTla~~ 189 (190)
..|...-...+.+++. +-..-.++-|-|.+|+||||+|-.
T Consensus 172 ~~Gi~TG~~~LD~~~~-G~~~G~LivIaarpg~GKT~fal~ 211 (472)
T PRK08506 172 IIGLDTGFVELNKMTK-GFNKGDLIIIAARPSMGKTTLCLN 211 (472)
T ss_pred CCcccCChHHHHhhcC-CCCCCceEEEEcCCCCChHHHHHH
Confidence 5566666666666542 212234677789999999999853
No 297
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=89.71 E-value=0.16 Score=46.06 Aligned_cols=21 Identities=33% Similarity=0.360 Sum_probs=18.3
Q ss_pred eEEEEEEcCCCCcHHHHhccC
Q 047923 170 VYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~v 190 (190)
..++.++|++|.||||+|+.+
T Consensus 215 ~~~~~~vglp~~GKStia~~L 235 (664)
T PTZ00322 215 SLIVIMVGLPGRGKTYVARQI 235 (664)
T ss_pred ceeEEecccCCCChhHHHHHH
Confidence 468889999999999999853
No 298
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=89.71 E-value=0.22 Score=43.71 Aligned_cols=41 Identities=20% Similarity=0.176 Sum_probs=26.6
Q ss_pred cccccccchhHHHHHHHhhhcCCCeEEEEEEcCCCCcHHHHhccC
Q 047923 146 ENQLVGRESRVEIIESLLAAESKDVYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 146 ~~~~vG~d~~~~~~~~~l~~~~~~~~vi~i~G~gGiGKTTla~~v 190 (190)
..+++|.+.-++.+.-.+ ..-..+.+.|.+|.||||||+.+
T Consensus 191 ~~dv~Gq~~~~~al~~aa----~~g~~vlliG~pGsGKTtlar~l 231 (499)
T TIGR00368 191 LKDIKGQQHAKRALEIAA----AGGHNLLLFGPPGSGKTMLASRL 231 (499)
T ss_pred HHHhcCcHHHHhhhhhhc----cCCCEEEEEecCCCCHHHHHHHH
Confidence 345666655544433222 12346888999999999999853
No 299
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=89.64 E-value=0.19 Score=45.66 Aligned_cols=19 Identities=26% Similarity=0.270 Sum_probs=17.2
Q ss_pred EEEEEEcCCCCcHHHHhcc
Q 047923 171 YILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~~ 189 (190)
..++|+|..|.|||||++.
T Consensus 492 ~~iaIvG~sGsGKSTLlkl 510 (694)
T TIGR03375 492 EKVAIIGRIGSGKSTLLKL 510 (694)
T ss_pred CEEEEECCCCCCHHHHHHH
Confidence 5789999999999999985
No 300
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=89.64 E-value=0.21 Score=44.48 Aligned_cols=19 Identities=21% Similarity=0.319 Sum_probs=17.2
Q ss_pred EEEEEEcCCCCcHHHHhcc
Q 047923 171 YILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~~ 189 (190)
..++|+|..|.|||||++.
T Consensus 367 ~~~aivG~sGsGKSTL~~l 385 (574)
T PRK11160 367 EKVALLGRTGCGKSTLLQL 385 (574)
T ss_pred CEEEEECCCCCCHHHHHHH
Confidence 5789999999999999975
No 301
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=89.61 E-value=0.39 Score=38.92 Aligned_cols=29 Identities=34% Similarity=0.346 Sum_probs=22.1
Q ss_pred HHHhhhcCCCeEEEEEEcCCCCcHHHHhc
Q 047923 160 ESLLAAESKDVYILGIWGVGSIGKTTIAR 188 (190)
Q Consensus 160 ~~~l~~~~~~~~vi~i~G~gGiGKTTla~ 188 (190)
.++|..+-..-+++=|+|..|.||||||-
T Consensus 50 D~~LGGGl~~g~ItEiyG~~gsGKT~lal 78 (279)
T COG0468 50 DEALGGGLPRGRITEIYGPESSGKTTLAL 78 (279)
T ss_pred HHHhcCCcccceEEEEecCCCcchhhHHH
Confidence 35555333447899999999999999984
No 302
>PRK11670 antiporter inner membrane protein; Provisional
Probab=89.58 E-value=0.28 Score=41.30 Aligned_cols=19 Identities=32% Similarity=0.555 Sum_probs=16.0
Q ss_pred eEEEEEE-cCCCCcHHHHhc
Q 047923 170 VYILGIW-GVGSIGKTTIAR 188 (190)
Q Consensus 170 ~~vi~i~-G~gGiGKTTla~ 188 (190)
.++|+|. |-||+||||+|-
T Consensus 107 ~~vIaV~S~KGGVGKTT~av 126 (369)
T PRK11670 107 KNIIAVSSGKGGVGKSSTAV 126 (369)
T ss_pred CEEEEEeCCCCCCCHHHHHH
Confidence 5777776 999999999974
No 303
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=89.55 E-value=0.35 Score=41.83 Aligned_cols=21 Identities=33% Similarity=0.449 Sum_probs=17.5
Q ss_pred eEEEEEEcCCCCcHHHHhccC
Q 047923 170 VYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~v 190 (190)
..-+-|||-.|.|||+|++++
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai 161 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAA 161 (450)
T ss_pred cCceEEECCCCCcHHHHHHHH
Confidence 345779999999999999864
No 304
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=89.55 E-value=0.42 Score=38.54 Aligned_cols=45 Identities=22% Similarity=0.242 Sum_probs=31.4
Q ss_pred cccccccchhHHH---HHHHhhh----cCCCeEEEEEEcCCCCcHHHHhccC
Q 047923 146 ENQLVGRESRVEI---IESLLAA----ESKDVYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 146 ~~~~vG~d~~~~~---~~~~l~~----~~~~~~vi~i~G~gGiGKTTla~~v 190 (190)
.++++|.+.-+.+ +++.|.. +.+--+-+-.+|.+|.|||.+|+++
T Consensus 120 ~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akal 171 (368)
T COG1223 120 LDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKAL 171 (368)
T ss_pred HhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHH
Confidence 3578898865443 3444543 2233567779999999999999974
No 305
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=89.53 E-value=0.24 Score=43.62 Aligned_cols=44 Identities=23% Similarity=0.242 Sum_probs=28.7
Q ss_pred ccccccchhHHHHHH---HhhhcC------CC-eEEEEEEcCCCCcHHHHhccC
Q 047923 147 NQLVGRESRVEIIES---LLAAES------KD-VYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 147 ~~~vG~d~~~~~~~~---~l~~~~------~~-~~vi~i~G~gGiGKTTla~~v 190 (190)
++.-|.|+-++++++ .|.... .+ -+=|=++|.+|.|||-||++|
T Consensus 304 ~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAv 357 (752)
T KOG0734|consen 304 EDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAV 357 (752)
T ss_pred ccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHh
Confidence 456688865555544 454321 11 223447899999999999985
No 306
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=89.48 E-value=0.2 Score=45.76 Aligned_cols=20 Identities=25% Similarity=0.350 Sum_probs=17.7
Q ss_pred eEEEEEEcCCCCcHHHHhcc
Q 047923 170 VYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~ 189 (190)
=..++|+|..|.|||||++.
T Consensus 507 Ge~vaIvG~SGsGKSTLl~l 526 (711)
T TIGR00958 507 GEVVALVGPSGSGKSTVAAL 526 (711)
T ss_pred CCEEEEECCCCCCHHHHHHH
Confidence 35789999999999999985
No 307
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=89.42 E-value=0.44 Score=38.60 Aligned_cols=29 Identities=10% Similarity=0.173 Sum_probs=22.0
Q ss_pred cchHHHHHHhhcccceEEEecCCCcCchh
Q 047923 18 EISESIAYAIESPAISVIIFSEGYPFSRW 46 (190)
Q Consensus 18 ~~~~~l~~ai~~s~~~ivv~S~~y~~S~w 46 (190)
....++.++++++++.+.|+.-.-..+..
T Consensus 13 k~~~~l~~~l~~aDvIL~VvDar~p~~~~ 41 (287)
T PRK09563 13 KARREIKENLKLVDVVIEVLDARIPLSSE 41 (287)
T ss_pred HHHHHHHHHhhhCCEEEEEEECCCCCCCC
Confidence 34578899999999999999865544443
No 308
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=89.39 E-value=0.19 Score=45.27 Aligned_cols=21 Identities=29% Similarity=0.243 Sum_probs=18.3
Q ss_pred eEEEEEEcCCCCcHHHHhccC
Q 047923 170 VYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~v 190 (190)
-.++-+.|++|.||||+|+++
T Consensus 460 ~~~i~~~G~~gsGKst~a~~l 480 (632)
T PRK05506 460 PATVWFTGLSGSGKSTIANLV 480 (632)
T ss_pred cEEEEecCCCCchHHHHHHHH
Confidence 578889999999999999753
No 309
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=89.31 E-value=0.16 Score=47.20 Aligned_cols=14 Identities=43% Similarity=0.446 Sum_probs=12.0
Q ss_pred EEEcCCCCcHHHHh
Q 047923 174 GIWGVGSIGKTTIA 187 (190)
Q Consensus 174 ~i~G~gGiGKTTla 187 (190)
=|.||+|.||||+-
T Consensus 689 LI~GMPGTGKTTtI 702 (1100)
T KOG1805|consen 689 LILGMPGTGKTTTI 702 (1100)
T ss_pred eeecCCCCCchhhH
Confidence 36899999999974
No 310
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=89.30 E-value=0.22 Score=44.14 Aligned_cols=19 Identities=21% Similarity=0.328 Sum_probs=17.1
Q ss_pred EEEEEEcCCCCcHHHHhcc
Q 047923 171 YILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~~ 189 (190)
..++|+|..|.|||||++.
T Consensus 359 ~~v~IvG~sGsGKSTLl~l 377 (571)
T TIGR02203 359 ETVALVGRSGSGKSTLVNL 377 (571)
T ss_pred CEEEEECCCCCCHHHHHHH
Confidence 5689999999999999875
No 311
>PRK03003 GTP-binding protein Der; Reviewed
Probab=89.28 E-value=0.43 Score=41.52 Aligned_cols=20 Identities=15% Similarity=0.303 Sum_probs=17.6
Q ss_pred eEEEEEEcCCCCcHHHHhcc
Q 047923 170 VYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~ 189 (190)
..-++|+|-+++|||||..+
T Consensus 211 ~~kI~iiG~~nvGKSSLin~ 230 (472)
T PRK03003 211 PRRVALVGKPNVGKSSLLNK 230 (472)
T ss_pred ceEEEEECCCCCCHHHHHHH
Confidence 56789999999999999864
No 312
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=89.28 E-value=0.4 Score=42.97 Aligned_cols=43 Identities=19% Similarity=0.135 Sum_probs=29.2
Q ss_pred ccc-ccchhHHHHHHHhhh-----------cCCCeEEEEEEcCCCCcHHHHhccC
Q 047923 148 QLV-GRESRVEIIESLLAA-----------ESKDVYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 148 ~~v-G~d~~~~~~~~~l~~-----------~~~~~~vi~i~G~gGiGKTTla~~v 190 (190)
+-+ |.|+-++++.+.... +.+.-+=|=.||.+|.||||+|+++
T Consensus 434 ~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkal 488 (693)
T KOG0730|consen 434 DDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKAL 488 (693)
T ss_pred hhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHH
Confidence 334 578777777654432 1223445568999999999999975
No 313
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=89.25 E-value=0.34 Score=42.28 Aligned_cols=34 Identities=18% Similarity=0.127 Sum_probs=24.5
Q ss_pred HHHHHHHhhhcCCCeEEEEEEcCCCCcHHHHhcc
Q 047923 156 VEIIESLLAAESKDVYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 156 ~~~~~~~l~~~~~~~~vi~i~G~gGiGKTTla~~ 189 (190)
...+.++|..+=..-.++-|.|.+|+||||||.+
T Consensus 249 i~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~ 282 (484)
T TIGR02655 249 VVRLDEMCGGGFFKDSIILATGATGTGKTLLVSK 282 (484)
T ss_pred hHhHHHHhcCCccCCcEEEEECCCCCCHHHHHHH
Confidence 4455566655434456778899999999999864
No 314
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=89.23 E-value=0.25 Score=44.00 Aligned_cols=45 Identities=22% Similarity=0.175 Sum_probs=33.1
Q ss_pred cccccccchhHHHHHHHhhhcC--C-------C-eEEEEEEcCCCCcHHHHhccC
Q 047923 146 ENQLVGRESRVEIIESLLAAES--K-------D-VYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 146 ~~~~vG~d~~~~~~~~~l~~~~--~-------~-~~vi~i~G~gGiGKTTla~~v 190 (190)
..+.-|.|+.++++.+.+..-. . . -+=+.++|.+|.|||.||+++
T Consensus 149 F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAv 203 (596)
T COG0465 149 FADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAV 203 (596)
T ss_pred hhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHH
Confidence 4567799988888877765311 1 1 345678899999999999975
No 315
>PRK01889 GTPase RsgA; Reviewed
Probab=89.05 E-value=0.36 Score=40.49 Aligned_cols=30 Identities=20% Similarity=0.487 Sum_probs=22.7
Q ss_pred HHHHHHHhhhcCCCeEEEEEEcCCCCcHHHHhcc
Q 047923 156 VEIIESLLAAESKDVYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 156 ~~~~~~~l~~~~~~~~vi~i~G~gGiGKTTla~~ 189 (190)
++++..+|.. -..++++|..|+|||||.+.
T Consensus 185 l~~L~~~L~~----g~~~~lvG~sgvGKStLin~ 214 (356)
T PRK01889 185 LDVLAAWLSG----GKTVALLGSSGVGKSTLVNA 214 (356)
T ss_pred HHHHHHHhhc----CCEEEEECCCCccHHHHHHH
Confidence 5566666643 24789999999999999764
No 316
>PHA02542 41 41 helicase; Provisional
Probab=89.00 E-value=0.89 Score=39.65 Aligned_cols=40 Identities=10% Similarity=0.032 Sum_probs=26.7
Q ss_pred ccccchhHHHHHHHhhhcCCCeEEEEEEcCCCCcHHHHhc
Q 047923 149 LVGRESRVEIIESLLAAESKDVYILGIWGVGSIGKTTIAR 188 (190)
Q Consensus 149 ~vG~d~~~~~~~~~l~~~~~~~~vi~i~G~gGiGKTTla~ 188 (190)
..|...-...+.+++..+-..-.++-|-|.+|+||||+|-
T Consensus 169 ~~gi~TG~~~LD~~t~gGl~~G~LiiIaarPgmGKTtfal 208 (473)
T PHA02542 169 ANKIPFKLEILNKITKGGAERKTLNVLLAGVNVGKSLGLC 208 (473)
T ss_pred CCccCCCcHHHHHhccCCCCCCcEEEEEcCCCccHHHHHH
Confidence 5566666777777663222223355566999999999985
No 317
>PRK05748 replicative DNA helicase; Provisional
Probab=89.00 E-value=0.96 Score=39.04 Aligned_cols=39 Identities=15% Similarity=0.183 Sum_probs=24.6
Q ss_pred ccccchhHHHHHHHhhhcCCCeEEEEEEcCCCCcHHHHhc
Q 047923 149 LVGRESRVEIIESLLAAESKDVYILGIWGVGSIGKTTIAR 188 (190)
Q Consensus 149 ~vG~d~~~~~~~~~l~~~~~~~~vi~i~G~gGiGKTTla~ 188 (190)
..|...-...+.+++. +-..-.++-|-|.+|+||||+|-
T Consensus 183 ~~gi~TG~~~LD~~~~-G~~~G~livIaarpg~GKT~~al 221 (448)
T PRK05748 183 ITGIPTGFTDLDKMTS-GLQPNDLIIVAARPSVGKTAFAL 221 (448)
T ss_pred CCCccCChHHHHHhcC-CCCCCceEEEEeCCCCCchHHHH
Confidence 3345555555555443 21223567788999999999985
No 318
>PRK09165 replicative DNA helicase; Provisional
Probab=88.91 E-value=1 Score=39.48 Aligned_cols=39 Identities=26% Similarity=0.305 Sum_probs=24.9
Q ss_pred ccccchhHHHHHHHhhhcCCCeEEEEEEcCCCCcHHHHhc
Q 047923 149 LVGRESRVEIIESLLAAESKDVYILGIWGVGSIGKTTIAR 188 (190)
Q Consensus 149 ~vG~d~~~~~~~~~l~~~~~~~~vi~i~G~gGiGKTTla~ 188 (190)
+.|...-...+.+++. +-..-.++-|-|.+|+||||+|-
T Consensus 197 ~~gi~TG~~~LD~~~g-G~~~g~livIaarpg~GKT~~al 235 (497)
T PRK09165 197 LSGISTGLRDLDSKLG-GLHPSDLIILAGRPSMGKTALAT 235 (497)
T ss_pred CCcccCChHHHhhhcC-CCCCCceEEEEeCCCCChHHHHH
Confidence 3455555555555542 22223567778999999999984
No 319
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=88.80 E-value=0.37 Score=42.65 Aligned_cols=45 Identities=20% Similarity=0.234 Sum_probs=33.6
Q ss_pred cccccccchhHHHHHHHhhhcCCCeEEEEEEcCCCCcHHHHhccC
Q 047923 146 ENQLVGRESRVEIIESLLAAESKDVYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 146 ~~~~vG~d~~~~~~~~~l~~~~~~~~vi~i~G~gGiGKTTla~~v 190 (190)
..+++|....++.+.+.+..-...-.-|=|.|-.|.||+++|+++
T Consensus 218 f~~iiG~S~~m~~~~~~i~~~A~s~~pVLI~GE~GTGKe~~A~~I 262 (538)
T PRK15424 218 LGDLLGQSPQMEQVRQTILLYARSSAAVLIQGETGTGKELAAQAI 262 (538)
T ss_pred hhheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHHHH
Confidence 345899999898888877642222234558999999999999864
No 320
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=88.78 E-value=0.67 Score=39.32 Aligned_cols=20 Identities=25% Similarity=0.298 Sum_probs=16.5
Q ss_pred CeEEEEEE-cCCCCcHHHHhc
Q 047923 169 DVYILGIW-GVGSIGKTTIAR 188 (190)
Q Consensus 169 ~~~vi~i~-G~gGiGKTTla~ 188 (190)
+..+|+|. .-||+||||+|-
T Consensus 105 ~~~vIav~n~KGGVGKTTta~ 125 (387)
T PHA02519 105 NPVVLAVMSHKGGVYKTSSAV 125 (387)
T ss_pred CceEEEEecCCCCCcHHHHHH
Confidence 37899988 559999999874
No 321
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=88.76 E-value=0.28 Score=40.55 Aligned_cols=19 Identities=42% Similarity=0.329 Sum_probs=16.0
Q ss_pred EEEEEcCCCCcHHHHhccC
Q 047923 172 ILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 172 vi~i~G~gGiGKTTla~~v 190 (190)
-+-|.|-.|.||||+++++
T Consensus 146 nilI~G~tGSGKTTll~aL 164 (323)
T PRK13833 146 NIVISGGTGSGKTTLANAV 164 (323)
T ss_pred eEEEECCCCCCHHHHHHHH
Confidence 3569999999999998763
No 322
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=88.74 E-value=0.36 Score=42.62 Aligned_cols=45 Identities=22% Similarity=0.305 Sum_probs=33.8
Q ss_pred cccccccchhHHHHHHHhhhcCCCeEEEEEEcCCCCcHHHHhccC
Q 047923 146 ENQLVGRESRVEIIESLLAAESKDVYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 146 ~~~~vG~d~~~~~~~~~l~~~~~~~~vi~i~G~gGiGKTTla~~v 190 (190)
..+++|....++.+.+.+..-...-.-|=|.|-.|.||+++|+++
T Consensus 211 f~~iiG~S~~m~~~~~~i~~~A~~~~pVLI~GE~GTGKe~lA~~I 255 (526)
T TIGR02329 211 LDDLLGASAPMEQVRALVRLYARSDATVLILGESGTGKELVAQAI 255 (526)
T ss_pred hhheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCcCHHHHHHHH
Confidence 356899999898888877543222234558999999999999864
No 323
>smart00350 MCM minichromosome maintenance proteins.
Probab=88.70 E-value=0.44 Score=41.87 Aligned_cols=45 Identities=16% Similarity=0.127 Sum_probs=30.3
Q ss_pred cccccccchhHHHHHHHhhhcC-----CCeE-----EEEEEcCCCCcHHHHhccC
Q 047923 146 ENQLVGRESRVEIIESLLAAES-----KDVY-----ILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 146 ~~~~vG~d~~~~~~~~~l~~~~-----~~~~-----vi~i~G~gGiGKTTla~~v 190 (190)
...++|.+.-+..+.-.|..+. ++.+ -+=|+|-+|.|||+||+++
T Consensus 202 ~p~i~G~~~~k~~l~l~l~gg~~~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l 256 (509)
T smart00350 202 APSIYGHEDIKKAILLLLFGGVHKNLPDGMKIRGDINILLLGDPGTAKSQLLKYV 256 (509)
T ss_pred CccccCcHHHHHHHHHHHhCCCccccCCCccccccceEEEeCCCChhHHHHHHHH
Confidence 4578999887666654443321 1111 3668999999999999864
No 324
>PF01057 Parvo_NS1: Parvovirus non-structural protein NS1; InterPro: IPR001257 Parvoviruses are some of the smallest viruses containing linear, non-segmented single-stranded DNA genomes, with an average genome size of 5000 nucleotides. Parvoviruses have been described that infect a wide range of invertebrates and vertebrates and are well known for causing enteric disease in mammals. Genomes contains two large ORFs: NS1 and VP1; other ORFs are found in some sub-types and different gene products can arise from splice variants and the use of different start codons []. This entry represents the helicase domain of the Parvovirus NS1 protein; which is required for viral DNA replication []. This domain contains the ATP/GTP-binding site motif A (P-loop). Parvoviral NS1 also regulates host gene expression through histone acetylation []. ; GO: 0019079 viral genome replication; PDB: 3P0S_A 1S9H_A 1U0J_A.
Probab=88.61 E-value=0.49 Score=38.19 Aligned_cols=32 Identities=25% Similarity=0.273 Sum_probs=24.1
Q ss_pred HHHHhhhcCCCeEEEEEEcCCCCcHHHHhccC
Q 047923 159 IESLLAAESKDVYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 159 ~~~~l~~~~~~~~vi~i~G~gGiGKTTla~~v 190 (190)
+..++.....+...+.++|.++.|||.||++|
T Consensus 102 l~~~~~k~~~krNti~~~Gp~~tGKt~la~aI 133 (271)
T PF01057_consen 102 LYCWLSKQWGKRNTIWFYGPASTGKTNLADAI 133 (271)
T ss_dssp HHHHHTTTSTT--EEEEESTTTSSHCHCHHCC
T ss_pred HHHHHhCcccCccEEEEEcCCCCCHHHHHHHH
Confidence 44555555566899999999999999999875
No 325
>PRK13705 plasmid-partitioning protein SopA; Provisional
Probab=88.60 E-value=0.65 Score=39.42 Aligned_cols=20 Identities=20% Similarity=0.278 Sum_probs=16.5
Q ss_pred CeEEEEEEcC-CCCcHHHHhc
Q 047923 169 DVYILGIWGV-GSIGKTTIAR 188 (190)
Q Consensus 169 ~~~vi~i~G~-gGiGKTTla~ 188 (190)
..++|+|... ||+||||+|-
T Consensus 105 ~~~vIai~n~KGGVGKTT~a~ 125 (388)
T PRK13705 105 FPPVIGVAAHKGGVYKTSVSV 125 (388)
T ss_pred CCeEEEEECCCCCchHHHHHH
Confidence 4789999854 9999999874
No 326
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=88.56 E-value=0.26 Score=44.72 Aligned_cols=19 Identities=32% Similarity=0.364 Sum_probs=17.1
Q ss_pred EEEEEEcCCCCcHHHHhcc
Q 047923 171 YILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~~ 189 (190)
..++|+|..|.|||||++.
T Consensus 479 e~~~IvG~nGsGKSTLl~l 497 (659)
T TIGR00954 479 NHLLICGPNGCGKSSLFRI 497 (659)
T ss_pred CEEEEECCCCCCHHHHHHH
Confidence 4789999999999999875
No 327
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=88.55 E-value=0.48 Score=40.39 Aligned_cols=20 Identities=30% Similarity=0.456 Sum_probs=16.9
Q ss_pred eEEEEEEcCCCCcHHHHhcc
Q 047923 170 VYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~ 189 (190)
.--++++|.+|+|||||..+
T Consensus 172 ~~~v~ivG~~~~GKSsLin~ 191 (429)
T TIGR03594 172 PIKIAIIGRPNVGKSTLVNA 191 (429)
T ss_pred ceEEEEECCCCCCHHHHHHH
Confidence 34588999999999999864
No 328
>PRK06904 replicative DNA helicase; Validated
Probab=88.55 E-value=2.9 Score=36.47 Aligned_cols=39 Identities=21% Similarity=0.176 Sum_probs=25.1
Q ss_pred ccccchhHHHHHHHhhhcCCCeEEEEEEcCCCCcHHHHhc
Q 047923 149 LVGRESRVEIIESLLAAESKDVYILGIWGVGSIGKTTIAR 188 (190)
Q Consensus 149 ~vG~d~~~~~~~~~l~~~~~~~~vi~i~G~gGiGKTTla~ 188 (190)
+.|...-...+.+++. +-..-.++-|-|.+|+||||+|-
T Consensus 201 ~~Gi~TG~~~LD~~t~-Gl~~G~LiiIaarPg~GKTafal 239 (472)
T PRK06904 201 VTGVTTGFTDLDKKTA-GLQPSDLIIVAARPSMGKTTFAM 239 (472)
T ss_pred CCCccCChHHHHHHHh-ccCCCcEEEEEeCCCCChHHHHH
Confidence 4566666666665542 11223456677999999999973
No 329
>COG0305 DnaB Replicative DNA helicase [DNA replication, recombination, and repair]
Probab=88.49 E-value=2.3 Score=36.63 Aligned_cols=39 Identities=15% Similarity=0.225 Sum_probs=26.0
Q ss_pred ccccchhHHHHHHHhhhcCCCeEEEEEEcCCCCcHHHHhc
Q 047923 149 LVGRESRVEIIESLLAAESKDVYILGIWGVGSIGKTTIAR 188 (190)
Q Consensus 149 ~vG~d~~~~~~~~~l~~~~~~~~vi~i~G~gGiGKTTla~ 188 (190)
+.|.......+.++... -..-.++.+-|-+|+||||+|=
T Consensus 176 ~~Gi~tgf~~LD~~t~G-~~~~dLii~AaRP~mGKTafal 214 (435)
T COG0305 176 LIGVPTGFTDLDEITSG-FRPGDLIIVAARPGMGKTALAL 214 (435)
T ss_pred CcccccCchhhHHHhcC-CccCCEEEEccCCCCChHHHHH
Confidence 56666666666554432 1224567788999999999983
No 330
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=88.47 E-value=0.28 Score=43.72 Aligned_cols=20 Identities=25% Similarity=0.272 Sum_probs=17.6
Q ss_pred EEEEEEcCCCCcHHHHhccC
Q 047923 171 YILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~~v 190 (190)
..++|+|-.|.|||||++.+
T Consensus 368 e~iaIvG~SGsGKSTLl~lL 387 (592)
T PRK10790 368 GFVALVGHTGSGKSTLASLL 387 (592)
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 57899999999999999853
No 331
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=88.44 E-value=0.27 Score=43.60 Aligned_cols=20 Identities=35% Similarity=0.348 Sum_probs=17.7
Q ss_pred eEEEEEEcCCCCcHHHHhcc
Q 047923 170 VYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~ 189 (190)
-..++|+|..|.|||||++.
T Consensus 368 G~~~aivG~sGsGKSTl~~l 387 (555)
T TIGR01194 368 GDIVFIVGENGCGKSTLAKL 387 (555)
T ss_pred CcEEEEECCCCCCHHHHHHH
Confidence 35899999999999999875
No 332
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=88.36 E-value=0.4 Score=43.52 Aligned_cols=22 Identities=32% Similarity=0.290 Sum_probs=19.1
Q ss_pred CeEEEEEEcCCCCcHHHHhccC
Q 047923 169 DVYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 169 ~~~vi~i~G~gGiGKTTla~~v 190 (190)
...+|.|-|..|.||||+|+.+
T Consensus 441 ~~~~i~i~g~~~~gks~~~~~l 462 (661)
T PRK11860 441 RVPVICIDGPTASGKGTVAARV 462 (661)
T ss_pred CcceEEeeCCCCCCHHHHHHHH
Confidence 3668999999999999999863
No 333
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=88.36 E-value=0.27 Score=40.20 Aligned_cols=43 Identities=26% Similarity=0.294 Sum_probs=30.2
Q ss_pred cccccchhHHHHHHHhhhc--C---------CCeEEEEEEcCCCCcHHHHhccC
Q 047923 148 QLVGRESRVEIIESLLAAE--S---------KDVYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 148 ~~vG~d~~~~~~~~~l~~~--~---------~~~~vi~i~G~gGiGKTTla~~v 190 (190)
++=|.|+..+++.+-.... . ..-.=+-+||.+|.|||-||++|
T Consensus 186 diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAV 239 (440)
T KOG0726|consen 186 DIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAV 239 (440)
T ss_pred ccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHH
Confidence 4557888888887764431 1 01233457999999999999986
No 334
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=88.36 E-value=0.27 Score=43.57 Aligned_cols=19 Identities=21% Similarity=0.328 Sum_probs=17.1
Q ss_pred EEEEEEcCCCCcHHHHhcc
Q 047923 171 YILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~~ 189 (190)
..++|+|-.|.|||||++.
T Consensus 367 e~i~IvG~sGsGKSTLlkl 385 (576)
T TIGR02204 367 ETVALVGPSGAGKSTLFQL 385 (576)
T ss_pred CEEEEECCCCCCHHHHHHH
Confidence 4689999999999999985
No 335
>PLN03211 ABC transporter G-25; Provisional
Probab=88.21 E-value=0.32 Score=44.14 Aligned_cols=21 Identities=33% Similarity=0.379 Sum_probs=18.3
Q ss_pred eEEEEEEcCCCCcHHHHhccC
Q 047923 170 VYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~v 190 (190)
-.+++|.|..|.|||||.+.+
T Consensus 94 Ge~~aI~GpnGaGKSTLL~iL 114 (659)
T PLN03211 94 GEILAVLGPSGSGKSTLLNAL 114 (659)
T ss_pred CEEEEEECCCCCCHHHHHHHH
Confidence 468999999999999998753
No 336
>PRK12608 transcription termination factor Rho; Provisional
Probab=88.06 E-value=0.27 Score=41.44 Aligned_cols=18 Identities=22% Similarity=0.030 Sum_probs=15.7
Q ss_pred EEEEEcCCCCcHHHHhcc
Q 047923 172 ILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 172 vi~i~G~gGiGKTTla~~ 189 (190)
-..|.|-.|.|||||++.
T Consensus 135 R~LIvG~pGtGKTTLl~~ 152 (380)
T PRK12608 135 RGLIVAPPRAGKTVLLQQ 152 (380)
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 348999999999999975
No 337
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=88.04 E-value=0.82 Score=36.59 Aligned_cols=20 Identities=40% Similarity=0.507 Sum_probs=16.1
Q ss_pred eEEEEEEcCCCCcHHHHhcc
Q 047923 170 VYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~ 189 (190)
-.+|=|=|..|+||||+|..
T Consensus 89 p~IILIGGasGVGkStIA~E 108 (299)
T COG2074 89 PLIILIGGASGVGKSTIAGE 108 (299)
T ss_pred CeEEEecCCCCCChhHHHHH
Confidence 35666779999999999964
No 338
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=88.02 E-value=0.29 Score=40.61 Aligned_cols=20 Identities=30% Similarity=0.489 Sum_probs=17.2
Q ss_pred eEEEEEEcCCCCcHHHHhcc
Q 047923 170 VYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~ 189 (190)
+.-|+|+|.+++|||||..+
T Consensus 157 ~adV~lvG~pnaGKSTLl~~ 176 (329)
T TIGR02729 157 LADVGLVGLPNAGKSTLISA 176 (329)
T ss_pred cccEEEEcCCCCCHHHHHHH
Confidence 45589999999999999865
No 339
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=88.02 E-value=0.48 Score=43.41 Aligned_cols=42 Identities=24% Similarity=0.184 Sum_probs=30.0
Q ss_pred ccccchhHHHHHHHhhhc-------CCC---eEEEEEEcCCCCcHHHHhccC
Q 047923 149 LVGRESRVEIIESLLAAE-------SKD---VYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 149 ~vG~d~~~~~~~~~l~~~-------~~~---~~vi~i~G~gGiGKTTla~~v 190 (190)
+=|.+.-+.+|.+-+... +.+ ..=|=+||.+|.|||-|||||
T Consensus 674 VGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAV 725 (953)
T KOG0736|consen 674 VGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAV 725 (953)
T ss_pred ccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHH
Confidence 347788888887765541 122 334557999999999999986
No 340
>PRK15115 response regulator GlrR; Provisional
Probab=87.79 E-value=0.95 Score=38.72 Aligned_cols=43 Identities=19% Similarity=0.114 Sum_probs=28.1
Q ss_pred cccccchhHHHHHHHhhhcCCCeEEEEEEcCCCCcHHHHhccC
Q 047923 148 QLVGRESRVEIIESLLAAESKDVYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 148 ~~vG~d~~~~~~~~~l~~~~~~~~vi~i~G~gGiGKTTla~~v 190 (190)
.++|....+..+.+....-...-..+-|.|..|.|||++|+++
T Consensus 135 ~lig~s~~~~~~~~~~~~~a~~~~~vli~Ge~GtGk~~lA~~i 177 (444)
T PRK15115 135 AIVTRSPLMLRLLEQARMVAQSDVSVLINGQSGTGKEILAQAI 177 (444)
T ss_pred cccccCHHHHHHHHHHHhhccCCCeEEEEcCCcchHHHHHHHH
Confidence 4677776666665544332222223458999999999999863
No 341
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=87.73 E-value=0.88 Score=36.34 Aligned_cols=35 Identities=20% Similarity=0.123 Sum_probs=23.1
Q ss_pred hhHHHHHHHhhh--cCCCeEEEEEE-cCCCCcHHHHhc
Q 047923 154 SRVEIIESLLAA--ESKDVYILGIW-GVGSIGKTTIAR 188 (190)
Q Consensus 154 ~~~~~~~~~l~~--~~~~~~vi~i~-G~gGiGKTTla~ 188 (190)
+.++.+..-|.. ...+.++|+|. +-||.||||+|-
T Consensus 85 e~~~~l~~~l~~~~~~~~~~vi~vts~~~g~Gktt~a~ 122 (274)
T TIGR03029 85 EALRALRSQLMLRWFSEGRKALAVVSAKSGEGCSYIAA 122 (274)
T ss_pred HHHHHHHHHhhhhccCCCCeEEEEECCCCCCCHHHHHH
Confidence 344445444432 23357888888 779999999885
No 342
>PRK07004 replicative DNA helicase; Provisional
Probab=87.70 E-value=2.4 Score=36.84 Aligned_cols=39 Identities=15% Similarity=0.194 Sum_probs=23.7
Q ss_pred cccchhHHHHHHHhhhcCCCeEEEEEEcCCCCcHHHHhcc
Q 047923 150 VGRESRVEIIESLLAAESKDVYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 150 vG~d~~~~~~~~~l~~~~~~~~vi~i~G~gGiGKTTla~~ 189 (190)
.|...-...+.+++. +-..-.++-|-|-+|+||||+|..
T Consensus 194 ~gi~TG~~~LD~~t~-G~~~g~liviaarpg~GKT~~al~ 232 (460)
T PRK07004 194 TGTPTGFVDLDRMTS-GMHGGELIIVAGRPSMGKTAFSMN 232 (460)
T ss_pred CCccCCcHHhccccc-CCCCCceEEEEeCCCCCccHHHHH
Confidence 344444444444432 212234677789999999999853
No 343
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=87.68 E-value=0.31 Score=44.33 Aligned_cols=19 Identities=32% Similarity=0.555 Sum_probs=17.1
Q ss_pred EEEEEEcCCCCcHHHHhcc
Q 047923 171 YILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~~ 189 (190)
..++|+|-.|.|||||++.
T Consensus 484 ~~vaivG~sGsGKSTL~~l 502 (694)
T TIGR01846 484 EFIGIVGPSGSGKSTLTKL 502 (694)
T ss_pred CEEEEECCCCCCHHHHHHH
Confidence 4789999999999999985
No 344
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=87.63 E-value=0.33 Score=40.39 Aligned_cols=19 Identities=21% Similarity=0.205 Sum_probs=16.9
Q ss_pred EEEEEEcCCCCcHHHHhcc
Q 047923 171 YILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~~ 189 (190)
.++.|.|..|.||||+.++
T Consensus 123 g~ili~G~tGSGKTT~l~a 141 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLAS 141 (343)
T ss_pred cEEEEECCCCCCHHHHHHH
Confidence 5688999999999999875
No 345
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=87.63 E-value=0.52 Score=42.17 Aligned_cols=44 Identities=18% Similarity=0.173 Sum_probs=32.4
Q ss_pred ccccccchhHHHHHHHhhhcCC----------CeEEEEEEcCCCCcHHHHhccC
Q 047923 147 NQLVGRESRVEIIESLLAAESK----------DVYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 147 ~~~vG~d~~~~~~~~~l~~~~~----------~~~vi~i~G~gGiGKTTla~~v 190 (190)
.++=|+|..+.++.+++..-.. .-|=+=++|.+|.|||.||+++
T Consensus 190 ~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~Ai 243 (802)
T KOG0733|consen 190 SDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAI 243 (802)
T ss_pred hhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHH
Confidence 4566899999999887654211 1244557899999999999875
No 346
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=87.59 E-value=0.51 Score=43.24 Aligned_cols=45 Identities=18% Similarity=0.135 Sum_probs=32.1
Q ss_pred cccccccchhHHHHHHHhhh--cC-----CC---eEEEEEEcCCCCcHHHHhccC
Q 047923 146 ENQLVGRESRVEIIESLLAA--ES-----KD---VYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 146 ~~~~vG~d~~~~~~~~~l~~--~~-----~~---~~vi~i~G~gGiGKTTla~~v 190 (190)
..++-|.|+-+++|.+.... +. -+ -+=+=++|.+|.|||=|||++
T Consensus 310 FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAi 364 (774)
T KOG0731|consen 310 FKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAI 364 (774)
T ss_pred cccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHH
Confidence 46788999888888776442 11 01 233457899999999999985
No 347
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=87.52 E-value=0.31 Score=40.52 Aligned_cols=20 Identities=30% Similarity=0.489 Sum_probs=16.9
Q ss_pred eEEEEEEcCCCCcHHHHhcc
Q 047923 170 VYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~ 189 (190)
+.-|+|+|.+++|||||..+
T Consensus 158 ~adVglVG~PNaGKSTLln~ 177 (335)
T PRK12299 158 LADVGLVGLPNAGKSTLISA 177 (335)
T ss_pred cCCEEEEcCCCCCHHHHHHH
Confidence 34589999999999999764
No 348
>PRK05636 replicative DNA helicase; Provisional
Probab=87.52 E-value=1.8 Score=38.12 Aligned_cols=39 Identities=15% Similarity=0.184 Sum_probs=24.8
Q ss_pred ccccchhHHHHHHHhhhcCCCeEEEEEEcCCCCcHHHHhc
Q 047923 149 LVGRESRVEIIESLLAAESKDVYILGIWGVGSIGKTTIAR 188 (190)
Q Consensus 149 ~vG~d~~~~~~~~~l~~~~~~~~vi~i~G~gGiGKTTla~ 188 (190)
..|...-...+.+++. +-..-.++-|-|.+|+||||+|-
T Consensus 245 ~~Gi~TG~~~LD~~t~-Gl~~G~Liiiaarpg~GKT~~al 283 (505)
T PRK05636 245 ATGIPTGFKDLDDLTN-GLRGGQMIIVAARPGVGKSTLAL 283 (505)
T ss_pred CCceecChHHHhhhcC-CCCCCceEEEEeCCCCCHHHHHH
Confidence 3455555555555432 11224567788999999999975
No 349
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=87.44 E-value=3.2 Score=37.85 Aligned_cols=84 Identities=19% Similarity=0.168 Sum_probs=44.0
Q ss_pred HHHHhHHHHHHHhhccccccCchhhhHHHHHHHHHhhhhhhhhccccccccccchhHHHHHHHhhhcCCC---eEEEEEE
Q 047923 100 EKLQSWRNATKEAASFMAFILPESELIKEVVNQILKRLAEVLLCDKENQLVGRESRVEIIESLLAAESKD---VYILGIW 176 (190)
Q Consensus 100 e~v~kWr~AL~ev~~~~g~~~~e~~~i~~iv~~v~~~l~~~~~~~~~~~~vG~d~~~~~~~~~l~~~~~~---~~vi~i~ 176 (190)
++++..|-..-.+...-|..-. +.+|.+|+.+|....- .........|.......++-....++ ...|.++
T Consensus 51 ~k~~~~rvkflrl~~Rlg~s~~-----~~vvaqVlyrl~l~~~-~~~~~~~s~d~a~~~a~~~ea~g~~~LdfslrIvLV 124 (763)
T TIGR00993 51 EKLQLIRVKFLRLAQRLGQTPE-----NSIAAQVLYRLGLLAG-RQGGGAFSLDAAKAMAEQLEAEGQDPLDFSLNILVL 124 (763)
T ss_pred HHHHHHHHHHHHHHHHhCCCcc-----cchHHHHHHHHHHhhc-cCccccccchhhHHHHhhhhhhhccccCcceEEEEE
Confidence 4566666666666666664432 2245556666543221 11111112333232222222222222 4568899
Q ss_pred cCCCCcHHHHhcc
Q 047923 177 GVGSIGKTTIARA 189 (190)
Q Consensus 177 G~gGiGKTTla~~ 189 (190)
|..|+||||+...
T Consensus 125 GKTGVGKSSLINS 137 (763)
T TIGR00993 125 GKSGVGKSATINS 137 (763)
T ss_pred CCCCCCHHHHHHH
Confidence 9999999999864
No 350
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=87.35 E-value=0.57 Score=42.94 Aligned_cols=20 Identities=15% Similarity=0.361 Sum_probs=17.6
Q ss_pred eEEEEEEcCCCCcHHHHhcc
Q 047923 170 VYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~ 189 (190)
..-++|+|.+|+|||||..+
T Consensus 450 ~~kI~ivG~~nvGKSSLin~ 469 (712)
T PRK09518 450 LRRVALVGRPNVGKSSLLNQ 469 (712)
T ss_pred CcEEEEECCCCCCHHHHHHH
Confidence 56789999999999999864
No 351
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=87.17 E-value=0.32 Score=44.02 Aligned_cols=43 Identities=23% Similarity=0.176 Sum_probs=27.0
Q ss_pred cccccchhHHHHHHHhhhcC----------CCeEEEEEEcCCCCcHHHHhccC
Q 047923 148 QLVGRESRVEIIESLLAAES----------KDVYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 148 ~~vG~d~~~~~~~~~l~~~~----------~~~~vi~i~G~gGiGKTTla~~v 190 (190)
++.|.+..++.+.+++.... .--+-+-++|.+|.||||+|+++
T Consensus 153 di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~ 205 (644)
T PRK10733 153 DVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAI 205 (644)
T ss_pred HHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHH
Confidence 45566665555555433210 00223779999999999999863
No 352
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=87.11 E-value=0.47 Score=39.56 Aligned_cols=20 Identities=35% Similarity=0.250 Sum_probs=17.3
Q ss_pred eEEEEEEcCCCCcHHHHhcc
Q 047923 170 VYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~ 189 (190)
-..+.|.|..|.||||+.++
T Consensus 178 ~~~ili~G~tGsGKTTll~a 197 (340)
T TIGR03819 178 RLAFLISGGTGSGKTTLLSA 197 (340)
T ss_pred CCeEEEECCCCCCHHHHHHH
Confidence 35788999999999999874
No 353
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=86.97 E-value=0.37 Score=40.95 Aligned_cols=19 Identities=37% Similarity=0.571 Sum_probs=16.6
Q ss_pred EEEEEEcCCCCcHHHHhcc
Q 047923 171 YILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~~ 189 (190)
.-|+|+|.+++|||||..+
T Consensus 160 adValVG~PNaGKSTLln~ 178 (390)
T PRK12298 160 ADVGLLGLPNAGKSTFIRA 178 (390)
T ss_pred ccEEEEcCCCCCHHHHHHH
Confidence 3489999999999999765
No 354
>PF06431 Polyoma_lg_T_C: Polyomavirus large T antigen C-terminus; InterPro: IPR010932 The group of polyomaviruses is formed by the homonymous murine virus (Py) as well as other representative members such as the simian virus 40 (SV40) and the human BK and JC viruses []. Their large T antigen (T-ag) protein binds to and activates DNA replication from the origin of DNA replication (ori). Insofar as is known, the T-ag binds to the origin first as a monomer to its pentanucleotide recognition element. The monomers are then thought to assemble into hexamers and double hexamers, which constitute the form that is active in initiation of DNA replication. When bound to the ori, T-ag double hexamers encircle DNA []. T-ag is a multidomain protein that contains an N-terminal J domain, which mediates protein interactions (see PDOC00553 from PROSITEDOC, IPR001623 from INTERPRO), a central origin-binding domain (OBD), and a C-terminal superfamily 3 helicase domain (see PDOC51206 from PROSITEDOC, IPR010932 from INTERPRO) []. This entry represents the helicase domain of LTag, which assembles into a hexameric structure containing a positively charged central channel that can bind both single- and double-stranded DNA []. ATP binding and hydrolysis trigger large conformational changes which are thought to be coupled to the melting of origin DNA and the unwinding of duplex DNA []. These conformational changes cause the angles and orientations between regions of a monomer to alter, creating what was described as an "iris"-like motion in the hexamer. In addition to this, six beta hairpins on the channel surface move longitudinally along the central channel, possibly serving as a motor for pulling DNA into the LTag double hexamer for unwinding.; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 2H1L_H 1SVO_A 1SVM_E 1SVL_B 1N25_A 4E2I_K.
Probab=86.87 E-value=0.79 Score=38.55 Aligned_cols=40 Identities=23% Similarity=0.057 Sum_probs=31.7
Q ss_pred ccchhHHHHHHHhhhcCCCeEEEEEEcCCCCcHHHHhccC
Q 047923 151 GRESRVEIIESLLAAESKDVYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 151 G~d~~~~~~~~~l~~~~~~~~vi~i~G~gGiGKTTla~~v 190 (190)
+++.-+-++.+++..+-.+-|-+-.-|.--.||||||.++
T Consensus 136 ~~~~~i~~iL~~lv~N~PKkRy~lFkGPvNsGKTTlAAAl 175 (417)
T PF06431_consen 136 NFDDVILEILKCLVENIPKKRYWLFKGPVNSGKTTLAAAL 175 (417)
T ss_dssp THHHHHHHHHHHHHHTBTTB-EEEEE-STTSSHHHHHHHH
T ss_pred chHHHHHHHHHHHhcCCCcceeEEEecCcCCchHHHHHHH
Confidence 5666777788888777778899999999999999999864
No 355
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=86.79 E-value=0.33 Score=39.19 Aligned_cols=19 Identities=26% Similarity=0.520 Sum_probs=16.6
Q ss_pred EEEEEEcCCCCcHHHHhcc
Q 047923 171 YILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~~ 189 (190)
.-++|.|-.|.||||||+.
T Consensus 70 Qr~~If~~~G~GKTtLa~~ 88 (274)
T cd01133 70 GKIGLFGGAGVGKTVLIME 88 (274)
T ss_pred CEEEEecCCCCChhHHHHH
Confidence 4578999999999999975
No 356
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=86.78 E-value=0.82 Score=38.50 Aligned_cols=37 Identities=24% Similarity=0.338 Sum_probs=24.7
Q ss_pred cccchhHHHHHHHhhhcCCCeEEEEEEcCCCCcHHHHhc
Q 047923 150 VGRESRVEIIESLLAAESKDVYILGIWGVGSIGKTTIAR 188 (190)
Q Consensus 150 vG~d~~~~~~~~~l~~~~~~~~vi~i~G~gGiGKTTla~ 188 (190)
-++.....--..+|.. +++.++.+.|-.|.|||-||=
T Consensus 227 ~prn~eQ~~ALdlLld--~dI~lV~L~G~AGtGKTlLAL 263 (436)
T COG1875 227 RPRNAEQRVALDLLLD--DDIDLVSLGGKAGTGKTLLAL 263 (436)
T ss_pred CcccHHHHHHHHHhcC--CCCCeEEeeccCCccHhHHHH
Confidence 3444333333444433 468889999999999999984
No 357
>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e.g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].
Probab=86.73 E-value=0.72 Score=33.33 Aligned_cols=38 Identities=24% Similarity=0.394 Sum_probs=32.8
Q ss_pred CeeEEEeC-CCCC--cccchHHHHHHhhcccceEEEecCCC
Q 047923 4 NIQTFIDD-QLNR--GDEISESIAYAIESPAISVIIFSEGY 41 (190)
Q Consensus 4 gi~~f~d~-~~~~--g~~~~~~l~~ai~~s~~~ivv~S~~y 41 (190)
|+.|.+|. +... +.....-+.++|+++...|+|+|+.|
T Consensus 30 g~~V~lD~~~~~~i~~~g~~~W~~~~~~~ad~Vliv~S~~~ 70 (150)
T PF08357_consen 30 GIDVILDQWELNEIARQGPPRWMERQIREADKVLIVCSPGY 70 (150)
T ss_pred CCceeecHHhhcccccCCHHHHHHHHHhcCCEEEEEeccch
Confidence 99999998 7744 66788899999999999999999644
No 358
>PRK05595 replicative DNA helicase; Provisional
Probab=86.59 E-value=1.7 Score=37.45 Aligned_cols=39 Identities=23% Similarity=0.154 Sum_probs=26.1
Q ss_pred ccccchhHHHHHHHhhhcCCCeEEEEEEcCCCCcHHHHhc
Q 047923 149 LVGRESRVEIIESLLAAESKDVYILGIWGVGSIGKTTIAR 188 (190)
Q Consensus 149 ~vG~d~~~~~~~~~l~~~~~~~~vi~i~G~gGiGKTTla~ 188 (190)
+.|.......+.+++. +-..-.++-|-|.+|+||||+|-
T Consensus 181 ~~gi~tg~~~ld~~~~-G~~~g~liviaarpg~GKT~~al 219 (444)
T PRK05595 181 TTGVASGFRELDAKTS-GFQKGDMILIAARPSMGKTTFAL 219 (444)
T ss_pred CCcccCChHHHHHhcC-CCCCCcEEEEEecCCCChHHHHH
Confidence 4566666666666553 21223466677999999999975
No 359
>KOG4181 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.40 E-value=0.95 Score=37.88 Aligned_cols=33 Identities=24% Similarity=0.354 Sum_probs=25.8
Q ss_pred hHHHHHHHhhhcCCCeEEEEEEcCCCCcHHHHhc
Q 047923 155 RVEIIESLLAAESKDVYILGIWGVGSIGKTTIAR 188 (190)
Q Consensus 155 ~~~~~~~~l~~~~~~~~vi~i~G~gGiGKTTla~ 188 (190)
-.+...++|... .++.|||+.|.-|.||+||..
T Consensus 174 ~~d~a~~ll~~~-tdf~VIgvlG~QgsGKStlls 206 (491)
T KOG4181|consen 174 FNDNARKLLHKT-TDFTVIGVLGGQGSGKSTLLS 206 (491)
T ss_pred hhhHHHHHhhcC-CCeeEEEeecCCCccHHHHHH
Confidence 345566666554 579999999999999999864
No 360
>PRK13764 ATPase; Provisional
Probab=86.39 E-value=0.39 Score=43.05 Aligned_cols=20 Identities=35% Similarity=0.242 Sum_probs=16.8
Q ss_pred EEEEEEcCCCCcHHHHhccC
Q 047923 171 YILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~~v 190 (190)
..+-|.|..|.||||+++++
T Consensus 258 ~~ILIsG~TGSGKTTll~AL 277 (602)
T PRK13764 258 EGILIAGAPGAGKSTFAQAL 277 (602)
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 34779999999999999863
No 361
>KOG2702 consensus Predicted panthothenate kinase/uridine kinase-related protein [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=86.37 E-value=0.58 Score=37.02 Aligned_cols=37 Identities=22% Similarity=0.188 Sum_probs=26.0
Q ss_pred cchhHHHHHHHhhhcCCCeEEEEEEcCCCCcHHHHhccC
Q 047923 152 RESRVEIIESLLAAESKDVYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 152 ~d~~~~~~~~~l~~~~~~~~vi~i~G~gGiGKTTla~~v 190 (190)
.++-.....+.|. ++.-+.+|+.|-||.||+|++.+|
T Consensus 103 ~de~y~~~~e~L~--~n~~~l~glag~pGtgkst~~a~v 139 (323)
T KOG2702|consen 103 DDEFYPVKYEALT--SNNEELTGLAGRPGTGKSTRIAAV 139 (323)
T ss_pred hhhhhHHHHHHhc--ccchheeeeecCCCCcchhHHHHH
Confidence 3333444455554 445678999999999999998753
No 362
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.36 E-value=1.7 Score=36.97 Aligned_cols=20 Identities=25% Similarity=0.303 Sum_probs=17.3
Q ss_pred CeEEEEEEcCCCCcHHHHhc
Q 047923 169 DVYILGIWGVGSIGKTTIAR 188 (190)
Q Consensus 169 ~~~vi~i~G~gGiGKTTla~ 188 (190)
+-.||-++|.-|.||||.+.
T Consensus 100 kpsVimfVGLqG~GKTTtc~ 119 (483)
T KOG0780|consen 100 KPSVIMFVGLQGSGKTTTCT 119 (483)
T ss_pred CCcEEEEEeccCCCcceeHH
Confidence 36799999999999999764
No 363
>PRK00093 GTP-binding protein Der; Reviewed
Probab=86.08 E-value=0.78 Score=39.25 Aligned_cols=20 Identities=25% Similarity=0.424 Sum_probs=17.4
Q ss_pred eEEEEEEcCCCCcHHHHhcc
Q 047923 170 VYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~ 189 (190)
..-++|+|.+|+|||||..+
T Consensus 173 ~~~v~ivG~~n~GKStlin~ 192 (435)
T PRK00093 173 PIKIAIIGRPNVGKSSLINA 192 (435)
T ss_pred ceEEEEECCCCCCHHHHHHH
Confidence 45689999999999999865
No 364
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=86.02 E-value=0.44 Score=39.64 Aligned_cols=42 Identities=21% Similarity=0.100 Sum_probs=26.0
Q ss_pred cccccchhHHHHHHHhhhcCCCeEEEEEEcCCCCcHHHHhcc
Q 047923 148 QLVGRESRVEIIESLLAAESKDVYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 148 ~~vG~d~~~~~~~~~l~~~~~~~~vi~i~G~gGiGKTTla~~ 189 (190)
+++.....-..+.+.|..--...+-+-|.|-.|.|||||+.+
T Consensus 151 dli~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTTlLNa 192 (355)
T COG4962 151 DLIIFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTTLLNA 192 (355)
T ss_pred HHHHcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHHHHHH
Confidence 344444434444444443323345677899999999999865
No 365
>PRK09862 putative ATP-dependent protease; Provisional
Probab=85.75 E-value=0.71 Score=40.60 Aligned_cols=22 Identities=27% Similarity=0.134 Sum_probs=18.9
Q ss_pred CeEEEEEEcCCCCcHHHHhccC
Q 047923 169 DVYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 169 ~~~vi~i~G~gGiGKTTla~~v 190 (190)
+-..+.+.|-.|.||||||+.+
T Consensus 209 ~G~~llliG~~GsGKTtLak~L 230 (506)
T PRK09862 209 GGHNLLLIGPPGTGKTMLASRI 230 (506)
T ss_pred CCcEEEEECCCCCcHHHHHHHH
Confidence 4568999999999999999853
No 366
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=85.62 E-value=0.42 Score=44.03 Aligned_cols=19 Identities=32% Similarity=0.393 Sum_probs=16.7
Q ss_pred EEEEEEcCCCCcHHHHhcc
Q 047923 171 YILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~~ 189 (190)
++..|.|.+|.||||++++
T Consensus 369 ~~~il~G~aGTGKTtll~~ 387 (744)
T TIGR02768 369 DIAVVVGRAGTGKSTMLKA 387 (744)
T ss_pred CEEEEEecCCCCHHHHHHH
Confidence 4678999999999999875
No 367
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=85.49 E-value=0.44 Score=43.72 Aligned_cols=20 Identities=40% Similarity=0.381 Sum_probs=17.0
Q ss_pred EEEEEEcCCCCcHHHHhccC
Q 047923 171 YILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~~v 190 (190)
+++.|.|.+|.||||+++++
T Consensus 339 ~~~iitGgpGTGKTt~l~~i 358 (720)
T TIGR01448 339 KVVILTGGPGTGKTTITRAI 358 (720)
T ss_pred CeEEEECCCCCCHHHHHHHH
Confidence 47788999999999998753
No 368
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=85.43 E-value=0.74 Score=39.42 Aligned_cols=43 Identities=23% Similarity=0.347 Sum_probs=31.5
Q ss_pred ccccccchhHHHHHHHhhhc-CCCeEEEEEEcCCCCcHHHHhccC
Q 047923 147 NQLVGRESRVEIIESLLAAE-SKDVYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 147 ~~~vG~d~~~~~~~~~l~~~-~~~~~vi~i~G~gGiGKTTla~~v 190 (190)
..++|....++.+...+..- ..+..++ |.|-.|.||+++|+++
T Consensus 139 ~~lig~s~~~~~l~~~i~~~a~~~~~vl-i~Ge~GtGK~~lA~~i 182 (445)
T TIGR02915 139 RGLITSSPGMQKICRTIEKIAPSDITVL-LLGESGTGKEVLARAL 182 (445)
T ss_pred cceeecCHHHHHHHHHHHHHhCCCCCEE-EECCCCcCHHHHHHHH
Confidence 45888888888887766542 2234444 8999999999999863
No 369
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=85.42 E-value=0.49 Score=40.71 Aligned_cols=21 Identities=14% Similarity=0.249 Sum_probs=18.1
Q ss_pred CeEEEEEEcCCCCcHHHHhcc
Q 047923 169 DVYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 169 ~~~vi~i~G~gGiGKTTla~~ 189 (190)
.-..++|.|-.|.|||||++.
T Consensus 154 ~GQ~igI~G~sGaGKSTLl~~ 174 (434)
T PRK07196 154 KGQRVGLMAGSGVGKSVLLGM 174 (434)
T ss_pred cceEEEEECCCCCCccHHHHH
Confidence 346799999999999999875
No 370
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=85.34 E-value=0.59 Score=38.67 Aligned_cols=21 Identities=33% Similarity=0.387 Sum_probs=17.9
Q ss_pred eEEEEEEcCCCCcHHHHhccC
Q 047923 170 VYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~v 190 (190)
-.+.-|-|+.|.||+||.+++
T Consensus 54 GeIfViMGLSGSGKSTLvR~~ 74 (386)
T COG4175 54 GEIFVIMGLSGSGKSTLVRLL 74 (386)
T ss_pred CeEEEEEecCCCCHHHHHHHH
Confidence 457778999999999999864
No 371
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=85.28 E-value=0.56 Score=40.52 Aligned_cols=20 Identities=25% Similarity=0.415 Sum_probs=17.4
Q ss_pred eEEEEEEcCCCCcHHHHhcc
Q 047923 170 VYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~ 189 (190)
-..++|+|-.|.|||||++.
T Consensus 165 Gqri~I~G~SGsGKTTLL~~ 184 (450)
T PRK06002 165 GQRIGIFAGSGVGKSTLLAM 184 (450)
T ss_pred CcEEEEECCCCCCHHHHHHH
Confidence 45789999999999999875
No 372
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=85.15 E-value=0.86 Score=38.23 Aligned_cols=19 Identities=21% Similarity=0.352 Sum_probs=16.2
Q ss_pred EEEEEEcCCCCcHHHHhcc
Q 047923 171 YILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~~ 189 (190)
+-+.++|+.|+|||||-.+
T Consensus 155 ~~v~~vG~~nvGKStliN~ 173 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINK 173 (360)
T ss_pred CeEEEECCCCCCHHHHHHH
Confidence 4678999999999999754
No 373
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=85.07 E-value=0.49 Score=41.57 Aligned_cols=19 Identities=26% Similarity=0.354 Sum_probs=16.7
Q ss_pred EEEEEEcCCCCcHHHHhcc
Q 047923 171 YILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~~ 189 (190)
.-++|+|-.|.|||||.+.
T Consensus 365 EkvAIlG~SGsGKSTllqL 383 (573)
T COG4987 365 EKVAILGRSGSGKSTLLQL 383 (573)
T ss_pred CeEEEECCCCCCHHHHHHH
Confidence 4578999999999999875
No 374
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=85.02 E-value=1 Score=35.90 Aligned_cols=45 Identities=22% Similarity=0.326 Sum_probs=31.5
Q ss_pred cccccccchhHHHHHHHhh-h-cCCCeEEEEEEcCCCCcHHHHhccC
Q 047923 146 ENQLVGRESRVEIIESLLA-A-ESKDVYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 146 ~~~~vG~d~~~~~~~~~l~-~-~~~~~~vi~i~G~gGiGKTTla~~v 190 (190)
-..++|.|..++.+.+--. . ..-...-+=+||.-|.||+.|.|++
T Consensus 59 L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~ 105 (287)
T COG2607 59 LADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKAL 105 (287)
T ss_pred HHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHH
Confidence 3578999998888865322 1 1112444568999999999999874
No 375
>COG1162 Predicted GTPases [General function prediction only]
Probab=84.98 E-value=1.1 Score=36.71 Aligned_cols=31 Identities=32% Similarity=0.461 Sum_probs=22.6
Q ss_pred hHHHHHHHhhhcCCCeEEEEEEcCCCCcHHHHhccC
Q 047923 155 RVEIIESLLAAESKDVYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 155 ~~~~~~~~l~~~~~~~~vi~i~G~gGiGKTTla~~v 190 (190)
.++++..+|... +..+.|..|+|||||..++
T Consensus 154 ~~~~l~~~l~~~-----~svl~GqSGVGKSSLiN~L 184 (301)
T COG1162 154 GLEELAELLAGK-----ITVLLGQSGVGKSTLINAL 184 (301)
T ss_pred cHHHHHHHhcCC-----eEEEECCCCCcHHHHHHhh
Confidence 456666666432 5678899999999997653
No 376
>PLN02772 guanylate kinase
Probab=84.90 E-value=0.64 Score=39.49 Aligned_cols=21 Identities=24% Similarity=0.229 Sum_probs=18.7
Q ss_pred CeEEEEEEcCCCCcHHHHhcc
Q 047923 169 DVYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 169 ~~~vi~i~G~gGiGKTTla~~ 189 (190)
..+++-|.|..|+||+||++.
T Consensus 134 ~~k~iVlsGPSGvGKsTL~~~ 154 (398)
T PLN02772 134 AEKPIVISGPSGVGKGTLISM 154 (398)
T ss_pred CCcEEEEECCCCCCHHHHHHH
Confidence 467899999999999999875
No 377
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=84.75 E-value=0.51 Score=42.25 Aligned_cols=18 Identities=33% Similarity=0.386 Sum_probs=15.8
Q ss_pred EEEEcCCCCcHHHHhccC
Q 047923 173 LGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 173 i~i~G~gGiGKTTla~~v 190 (190)
+=+||.+|.|||-|||+|
T Consensus 548 vLL~GPPGCGKTLlAKAV 565 (802)
T KOG0733|consen 548 VLLCGPPGCGKTLLAKAV 565 (802)
T ss_pred eEEeCCCCccHHHHHHHH
Confidence 347999999999999985
No 378
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=84.57 E-value=0.65 Score=40.03 Aligned_cols=21 Identities=14% Similarity=0.295 Sum_probs=17.7
Q ss_pred eEEEEEEcCCCCcHHHHhccC
Q 047923 170 VYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~v 190 (190)
-..++|.|-.|.|||||++.+
T Consensus 162 GqrigI~G~sG~GKSTLL~~I 182 (444)
T PRK08972 162 GQRMGLFAGSGVGKSVLLGMM 182 (444)
T ss_pred CCEEEEECCCCCChhHHHHHh
Confidence 356899999999999998753
No 379
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=84.53 E-value=0.54 Score=41.74 Aligned_cols=20 Identities=30% Similarity=0.579 Sum_probs=17.1
Q ss_pred eEEEEEEcCCCCcHHHHhcc
Q 047923 170 VYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~ 189 (190)
--+++++|.+|.|||||.+.
T Consensus 69 PfIvavvGPpGtGKsTLirS 88 (1077)
T COG5192 69 PFIVAVVGPPGTGKSTLIRS 88 (1077)
T ss_pred CeEEEeecCCCCChhHHHHH
Confidence 45778999999999999874
No 380
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=84.51 E-value=0.53 Score=38.95 Aligned_cols=14 Identities=36% Similarity=0.629 Sum_probs=12.2
Q ss_pred EEEcCCCCcHHHHh
Q 047923 174 GIWGVGSIGKTTIA 187 (190)
Q Consensus 174 ~i~G~gGiGKTTla 187 (190)
=|+|-||+|||||+
T Consensus 93 ~~~gdsg~GKttll 106 (402)
T COG3598 93 ILYGDSGVGKTTLL 106 (402)
T ss_pred EEecCCcccHhHHH
Confidence 35699999999997
No 381
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=84.48 E-value=0.79 Score=37.96 Aligned_cols=18 Identities=33% Similarity=0.589 Sum_probs=15.9
Q ss_pred CeEEEEEEcCCCCcHHHH
Q 047923 169 DVYILGIWGVGSIGKTTI 186 (190)
Q Consensus 169 ~~~vi~i~G~gGiGKTTl 186 (190)
+.-|+-++|..|+||||-
T Consensus 138 ~p~Vil~vGVNG~GKTTT 155 (340)
T COG0552 138 KPFVILFVGVNGVGKTTT 155 (340)
T ss_pred CcEEEEEEecCCCchHhH
Confidence 478999999999999984
No 382
>PLN03140 ABC transporter G family member; Provisional
Probab=84.38 E-value=0.63 Score=46.06 Aligned_cols=21 Identities=33% Similarity=0.213 Sum_probs=18.6
Q ss_pred eEEEEEEcCCCCcHHHHhccC
Q 047923 170 VYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~v 190 (190)
-++++|.|.+|.|||||.+.+
T Consensus 191 Ge~~~llGpnGSGKSTLLk~L 211 (1470)
T PLN03140 191 SRMTLLLGPPSSGKTTLLLAL 211 (1470)
T ss_pred CeEEEEEcCCCCCHHHHHHHH
Confidence 578999999999999998753
No 383
>COG1084 Predicted GTPase [General function prediction only]
Probab=84.30 E-value=0.64 Score=38.38 Aligned_cols=22 Identities=23% Similarity=0.406 Sum_probs=19.8
Q ss_pred CeEEEEEEcCCCCcHHHHhccC
Q 047923 169 DVYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 169 ~~~vi~i~G~gGiGKTTla~~v 190 (190)
+.+.+-|.|++-+|||||.++|
T Consensus 167 ~~pTivVaG~PNVGKSSlv~~l 188 (346)
T COG1084 167 DLPTIVVAGYPNVGKSSLVRKL 188 (346)
T ss_pred CCCeEEEecCCCCcHHHHHHHH
Confidence 5899999999999999998764
No 384
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=84.18 E-value=1.2 Score=38.56 Aligned_cols=41 Identities=24% Similarity=0.257 Sum_probs=29.6
Q ss_pred ccccccccchhHHHHHHHhhhcCCCeEEEEEEcCCCCcHHHHhcc
Q 047923 145 KENQLVGRESRVEIIESLLAAESKDVYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 145 ~~~~~vG~d~~~~~~~~~l~~~~~~~~vi~i~G~gGiGKTTla~~ 189 (190)
+..+++|.+.-++.++---..+.+ +=++|.+|.|||-||+.
T Consensus 177 D~~DV~GQ~~AKrAleiAAAGgHn----Ll~~GpPGtGKTmla~R 217 (490)
T COG0606 177 DFKDVKGQEQAKRALEIAAAGGHN----LLLVGPPGTGKTMLASR 217 (490)
T ss_pred chhhhcCcHHHHHHHHHHHhcCCc----EEEecCCCCchHHhhhh
Confidence 345678988888877644433332 55779999999999974
No 385
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=83.98 E-value=0.6 Score=46.22 Aligned_cols=20 Identities=25% Similarity=0.267 Sum_probs=17.7
Q ss_pred EEEEEEcCCCCcHHHHhccC
Q 047923 171 YILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~~v 190 (190)
.+++|+|..|.|||||++.+
T Consensus 412 e~vaIvG~SGsGKSTLl~lL 431 (1466)
T PTZ00265 412 KTYAFVGESGCGKSTILKLI 431 (1466)
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 57899999999999999753
No 386
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=83.89 E-value=0.57 Score=40.52 Aligned_cols=18 Identities=39% Similarity=0.401 Sum_probs=15.5
Q ss_pred EEEEcCCCCcHHHHhccC
Q 047923 173 LGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 173 i~i~G~gGiGKTTla~~v 190 (190)
|=|-|.+|.||||.|+++
T Consensus 266 ILIAG~PGaGKsTFaqAl 283 (604)
T COG1855 266 ILIAGAPGAGKSTFAQAL 283 (604)
T ss_pred eEEecCCCCChhHHHHHH
Confidence 556799999999999974
No 387
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=83.82 E-value=3.4 Score=35.55 Aligned_cols=19 Identities=32% Similarity=0.340 Sum_probs=16.5
Q ss_pred eEEEEEEcCCCCcHHHHhc
Q 047923 170 VYILGIWGVGSIGKTTIAR 188 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~ 188 (190)
-.+|=.+|.-|.||||.|-
T Consensus 100 P~vImmvGLQGsGKTTt~~ 118 (451)
T COG0541 100 PTVILMVGLQGSGKTTTAG 118 (451)
T ss_pred CeEEEEEeccCCChHhHHH
Confidence 4678899999999999874
No 388
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=83.48 E-value=1.5 Score=38.33 Aligned_cols=19 Identities=37% Similarity=0.246 Sum_probs=16.4
Q ss_pred EEEEEEcCCCCcHHHHhcc
Q 047923 171 YILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~~ 189 (190)
.++.|.|..|.||||+..+
T Consensus 243 GlilitGptGSGKTTtL~a 261 (486)
T TIGR02533 243 GIILVTGPTGSGKTTTLYA 261 (486)
T ss_pred CEEEEEcCCCCCHHHHHHH
Confidence 4788999999999999764
No 389
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=83.44 E-value=1.3 Score=36.31 Aligned_cols=46 Identities=26% Similarity=0.289 Sum_probs=30.7
Q ss_pred cccccccccchhHHH---HHHHhhhcCCCeEEEEEEcCCCCcHHHHhcc
Q 047923 144 DKENQLVGRESRVEI---IESLLAAESKDVYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 144 ~~~~~~vG~d~~~~~---~~~~l~~~~~~~~vi~i~G~gGiGKTTla~~ 189 (190)
..+..+||.+.-.+. +.+++....-.-|-+-+-|.+|.|||+||-+
T Consensus 35 ~~~~g~vGQ~~AReAagiivdlik~KkmaGravLlaGppgtGKTAlAla 83 (456)
T KOG1942|consen 35 EVAAGFVGQENAREAAGIIVDLIKSKKMAGRAVLLAGPPGTGKTALALA 83 (456)
T ss_pred ecccccccchhhhhhhhHHHHHHHhhhccCcEEEEecCCCCchhHHHHH
Confidence 345688998765553 3455544322245566889999999999854
No 390
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.41 E-value=0.69 Score=41.94 Aligned_cols=19 Identities=32% Similarity=0.448 Sum_probs=17.2
Q ss_pred EEEEEEcCCCCcHHHHhcc
Q 047923 171 YILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~~ 189 (190)
.+++++|..|.||||+|..
T Consensus 495 e~vALVGPSGsGKSTiasL 513 (716)
T KOG0058|consen 495 EVVALVGPSGSGKSTIASL 513 (716)
T ss_pred CEEEEECCCCCCHHHHHHH
Confidence 4899999999999999974
No 391
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=83.24 E-value=0.76 Score=45.30 Aligned_cols=21 Identities=14% Similarity=0.099 Sum_probs=18.4
Q ss_pred eEEEEEEcCCCCcHHHHhccC
Q 047923 170 VYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~v 190 (190)
-.+++|.|..|.|||||.+.+
T Consensus 87 Ge~~aIlG~nGsGKSTLLk~L 107 (1394)
T TIGR00956 87 GELTVVLGRPGSGCSTLLKTI 107 (1394)
T ss_pred CEEEEEECCCCCCHHHHHHHH
Confidence 468999999999999998753
No 392
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=83.20 E-value=0.8 Score=41.24 Aligned_cols=20 Identities=35% Similarity=0.478 Sum_probs=17.7
Q ss_pred eEEEEEEcCCCCcHHHHhcc
Q 047923 170 VYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~ 189 (190)
=.+++|.|-.|.|||||-+.
T Consensus 51 Ge~~aI~G~sGsGKSTLL~~ 70 (617)
T TIGR00955 51 GELLAVMGSSGAGKTTLMNA 70 (617)
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 46899999999999999775
No 393
>PLN03232 ABC transporter C family member; Provisional
Probab=82.94 E-value=0.7 Score=45.88 Aligned_cols=20 Identities=25% Similarity=0.385 Sum_probs=17.7
Q ss_pred eEEEEEEcCCCCcHHHHhcc
Q 047923 170 VYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~ 189 (190)
-..+||+|..|.|||||++.
T Consensus 1262 GekvaIVG~SGSGKSTL~~l 1281 (1495)
T PLN03232 1262 SEKVGVVGRTGAGKSSMLNA 1281 (1495)
T ss_pred CCEEEEECCCCCCHHHHHHH
Confidence 35799999999999999975
No 394
>PRK07773 replicative DNA helicase; Validated
Probab=82.80 E-value=2.6 Score=39.68 Aligned_cols=40 Identities=15% Similarity=0.123 Sum_probs=24.8
Q ss_pred ccccchhHHHHHHHhhhcCCCeEEEEEEcCCCCcHHHHhcc
Q 047923 149 LVGRESRVEIIESLLAAESKDVYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 149 ~vG~d~~~~~~~~~l~~~~~~~~vi~i~G~gGiGKTTla~~ 189 (190)
..|...-...+.+++ .+-..-.++-|-|-+|+||||+|-.
T Consensus 197 ~~Gi~TG~~~LD~l~-~Gl~~G~livIagrPg~GKT~fal~ 236 (886)
T PRK07773 197 ARGVPTGFTELDAMT-NGLHPGQLIIVAARPSMGKTTFGLD 236 (886)
T ss_pred CCCccCChhHhcccc-CCCCCCcEEEEEeCCCCCcHHHHHH
Confidence 445555555554444 1112235677889999999999853
No 395
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=82.57 E-value=0.8 Score=38.68 Aligned_cols=18 Identities=33% Similarity=0.348 Sum_probs=15.7
Q ss_pred EEEEEcCCCCcHHHHhcc
Q 047923 172 ILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 172 vi~i~G~gGiGKTTla~~ 189 (190)
.+-|.|..|.||||+.++
T Consensus 151 lilI~G~TGSGKTT~l~a 168 (372)
T TIGR02525 151 LGLICGETGSGKSTLAAS 168 (372)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 467899999999999875
No 396
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=82.56 E-value=0.76 Score=37.24 Aligned_cols=21 Identities=29% Similarity=0.444 Sum_probs=18.0
Q ss_pred CeEEEEEEcCCCCcHHHHhcc
Q 047923 169 DVYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 169 ~~~vi~i~G~gGiGKTTla~~ 189 (190)
.-.++|.+|..|.||||+-|.
T Consensus 49 ~G~ivgflGaNGAGKSTtLKm 69 (325)
T COG4586 49 KGEIVGFLGANGAGKSTTLKM 69 (325)
T ss_pred CCcEEEEEcCCCCcchhhHHH
Confidence 346899999999999999774
No 397
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=82.46 E-value=0.69 Score=40.03 Aligned_cols=20 Identities=25% Similarity=0.386 Sum_probs=16.9
Q ss_pred eEEEEEEcCCCCcHHHHhcc
Q 047923 170 VYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~ 189 (190)
-.-|+|+|..|+||+||.+.
T Consensus 613 dSRiaIVGPNGVGKSTlLkL 632 (807)
T KOG0066|consen 613 DSRIAIVGPNGVGKSTLLKL 632 (807)
T ss_pred cceeEEECCCCccHHHHHHH
Confidence 34589999999999999764
No 398
>PRK08149 ATP synthase SpaL; Validated
Probab=82.43 E-value=0.82 Score=39.31 Aligned_cols=20 Identities=25% Similarity=0.408 Sum_probs=17.3
Q ss_pred eEEEEEEcCCCCcHHHHhcc
Q 047923 170 VYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~ 189 (190)
-..++|.|-.|.|||||.+.
T Consensus 151 Gq~i~I~G~sG~GKTTLl~~ 170 (428)
T PRK08149 151 GQRMGIFASAGCGKTSLMNM 170 (428)
T ss_pred CCEEEEECCCCCChhHHHHH
Confidence 45689999999999999864
No 399
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=82.30 E-value=1.4 Score=37.43 Aligned_cols=22 Identities=23% Similarity=0.240 Sum_probs=19.3
Q ss_pred CCeEEEEEEcCCCCcHHHHhcc
Q 047923 168 KDVYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 168 ~~~~vi~i~G~gGiGKTTla~~ 189 (190)
....++-|+|+-+.|||||+..
T Consensus 71 ~~~~~vmvvG~vDSGKSTLt~~ 92 (398)
T COG1341 71 GKVGVVMVVGPVDSGKSTLTTY 92 (398)
T ss_pred cCCcEEEEECCcCcCHHHHHHH
Confidence 3578899999999999999875
No 400
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=82.30 E-value=0.84 Score=37.83 Aligned_cols=20 Identities=30% Similarity=0.428 Sum_probs=17.1
Q ss_pred eEEEEEEcCCCCcHHHHhcc
Q 047923 170 VYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~ 189 (190)
-..++|.|-.|.|||||.+.
T Consensus 69 Gqri~I~G~sG~GKTtLl~~ 88 (326)
T cd01136 69 GQRLGIFAGSGVGKSTLLGM 88 (326)
T ss_pred CcEEEEECCCCCChHHHHHH
Confidence 45689999999999999764
No 401
>PRK06321 replicative DNA helicase; Provisional
Probab=81.64 E-value=1.7 Score=37.91 Aligned_cols=40 Identities=13% Similarity=0.184 Sum_probs=26.4
Q ss_pred ccccchhHHHHHHHhhhcCCCeEEEEEEcCCCCcHHHHhcc
Q 047923 149 LVGRESRVEIIESLLAAESKDVYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 149 ~vG~d~~~~~~~~~l~~~~~~~~vi~i~G~gGiGKTTla~~ 189 (190)
+.|.......+.+++. +-..-.++-|-|-+|+||||+|-.
T Consensus 206 ~~Gi~tG~~~LD~~t~-Gl~~G~LiiiaarPgmGKTafal~ 245 (472)
T PRK06321 206 ISGIPTHFIDLDKMIN-GFSPSNLMILAARPAMGKTALALN 245 (472)
T ss_pred CCccccCcHHHHHHhc-CCCCCcEEEEEeCCCCChHHHHHH
Confidence 4566666666666554 222234667789999999999853
No 402
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=81.52 E-value=0.79 Score=45.51 Aligned_cols=19 Identities=32% Similarity=0.459 Sum_probs=17.0
Q ss_pred EEEEEEcCCCCcHHHHhcc
Q 047923 171 YILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~~ 189 (190)
..+||+|-.|.|||||+++
T Consensus 1246 ekvaIvGrSGsGKSTLl~l 1264 (1490)
T TIGR01271 1246 QRVGLLGRTGSGKSTLLSA 1264 (1490)
T ss_pred CEEEEECCCCCCHHHHHHH
Confidence 4689999999999999875
No 403
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=81.31 E-value=0.66 Score=40.12 Aligned_cols=19 Identities=32% Similarity=0.510 Sum_probs=16.3
Q ss_pred EEEEEEcCCCCcHHHHhcc
Q 047923 171 YILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~~ 189 (190)
|--|++|..|.|||||.+.
T Consensus 291 RRYGLVGPNG~GKTTLLkH 309 (807)
T KOG0066|consen 291 RRYGLVGPNGMGKTTLLKH 309 (807)
T ss_pred ceecccCCCCCchHHHHHH
Confidence 5568999999999999874
No 404
>PRK05922 type III secretion system ATPase; Validated
Probab=81.30 E-value=0.9 Score=39.13 Aligned_cols=19 Identities=16% Similarity=0.392 Sum_probs=16.6
Q ss_pred EEEEEEcCCCCcHHHHhcc
Q 047923 171 YILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~~ 189 (190)
..++|.|-.|.|||||.+.
T Consensus 158 qrigI~G~nG~GKSTLL~~ 176 (434)
T PRK05922 158 QRIGVFSEPGSGKSSLLST 176 (434)
T ss_pred cEEEEECCCCCChHHHHHH
Confidence 4589999999999999874
No 405
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=81.29 E-value=0.95 Score=39.17 Aligned_cols=20 Identities=20% Similarity=0.341 Sum_probs=17.4
Q ss_pred eEEEEEEcCCCCcHHHHhcc
Q 047923 170 VYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~ 189 (190)
-..++|.|-.|.|||||++.
T Consensus 168 GqrigI~G~sG~GKSTLl~~ 187 (451)
T PRK05688 168 GQRLGLFAGTGVGKSVLLGM 187 (451)
T ss_pred CcEEEEECCCCCCHHHHHHH
Confidence 45689999999999999875
No 406
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=81.27 E-value=0.88 Score=45.29 Aligned_cols=19 Identities=26% Similarity=0.398 Sum_probs=17.3
Q ss_pred EEEEEEcCCCCcHHHHhcc
Q 047923 171 YILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~~ 189 (190)
..+||+|..|.|||||+++
T Consensus 1313 ekiaIVGrTGsGKSTL~~l 1331 (1522)
T TIGR00957 1313 EKVGIVGRTGAGKSSLTLG 1331 (1522)
T ss_pred CEEEEECCCCCCHHHHHHH
Confidence 5799999999999999875
No 407
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=81.21 E-value=1.6 Score=37.43 Aligned_cols=43 Identities=23% Similarity=0.095 Sum_probs=29.4
Q ss_pred cccccchhHHHHHHHhhhcCCCeEEEEEEcCCCCcHHHHhccC
Q 047923 148 QLVGRESRVEIIESLLAAESKDVYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 148 ~~vG~d~~~~~~~~~l~~~~~~~~vi~i~G~gGiGKTTla~~v 190 (190)
.++|....+..+.+.+..-...-.-+-|.|-.|.||+++|+++
T Consensus 144 ~ii~~S~~~~~~~~~~~~~a~~~~~vli~Ge~GtGK~~lA~~i 186 (457)
T PRK11361 144 HILTNSPAMMDICKDTAKIALSQASVLISGESGTGKELIARAI 186 (457)
T ss_pred ceecccHHHhHHHHHHHHHcCCCcEEEEEcCCCccHHHHHHHH
Confidence 4777777777776655443222233458899999999999863
No 408
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=81.18 E-value=1 Score=44.48 Aligned_cols=19 Identities=26% Similarity=0.447 Sum_probs=17.3
Q ss_pred EEEEEEcCCCCcHHHHhcc
Q 047923 171 YILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~~ 189 (190)
.+++|.|..|.|||||.+.
T Consensus 790 e~~aI~G~sGaGKSTLL~~ 808 (1394)
T TIGR00956 790 TLTALMGASGAGKTTLLNV 808 (1394)
T ss_pred EEEEEECCCCCCHHHHHHH
Confidence 5899999999999999875
No 409
>PLN03130 ABC transporter C family member; Provisional
Probab=81.18 E-value=0.89 Score=45.53 Aligned_cols=19 Identities=32% Similarity=0.438 Sum_probs=17.3
Q ss_pred EEEEEEcCCCCcHHHHhcc
Q 047923 171 YILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~~ 189 (190)
..+||+|..|.|||||++.
T Consensus 1266 ekVaIVGrSGSGKSTLl~l 1284 (1622)
T PLN03130 1266 EKVGIVGRTGAGKSSMLNA 1284 (1622)
T ss_pred CEEEEECCCCCCHHHHHHH
Confidence 5799999999999999875
No 410
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=81.17 E-value=1.9 Score=39.92 Aligned_cols=32 Identities=28% Similarity=0.331 Sum_probs=22.7
Q ss_pred HHHHHHhh-hcCCCeEEEEEEcCCCCcHHHHhc
Q 047923 157 EIIESLLA-AESKDVYILGIWGVGSIGKTTIAR 188 (190)
Q Consensus 157 ~~~~~~l~-~~~~~~~vi~i~G~gGiGKTTla~ 188 (190)
..+..+|. .+=..-+++=|+|..|+||||||-
T Consensus 46 ~~LD~lLg~GGip~GsiteI~G~~GsGKTtLal 78 (790)
T PRK09519 46 IALDVALGIGGLPRGRVIEIYGPESSGKTTVAL 78 (790)
T ss_pred HHHHHhhcCCCccCCeEEEEECCCCCCHHHHHH
Confidence 34556665 332335677799999999999984
No 411
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=81.13 E-value=1 Score=38.85 Aligned_cols=21 Identities=29% Similarity=0.376 Sum_probs=17.8
Q ss_pred eEEEEEEcCCCCcHHHHhccC
Q 047923 170 VYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~v 190 (190)
-..++|.|-.|.|||||++.+
T Consensus 157 Gq~~~i~G~sG~GKStLl~~i 177 (434)
T PRK08472 157 GQKLGIFAGSGVGKSTLMGMI 177 (434)
T ss_pred CCEEEEECCCCCCHHHHHHHH
Confidence 457899999999999998753
No 412
>CHL00189 infB translation initiation factor 2; Provisional
Probab=81.05 E-value=0.89 Score=41.81 Aligned_cols=21 Identities=33% Similarity=0.289 Sum_probs=18.5
Q ss_pred CeEEEEEEcCCCCcHHHHhcc
Q 047923 169 DVYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 169 ~~~vi~i~G~gGiGKTTla~~ 189 (190)
..++++|+|..|.|||||..+
T Consensus 243 r~p~V~IvGhvdvGKTSLld~ 263 (742)
T CHL00189 243 RPPIVTILGHVDHGKTTLLDK 263 (742)
T ss_pred cCCEEEEECCCCCCHHHHHHH
Confidence 367999999999999999864
No 413
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=81.03 E-value=1.5 Score=37.65 Aligned_cols=44 Identities=23% Similarity=0.271 Sum_probs=31.5
Q ss_pred ccccccchhHHHHHHHhhhcCCCeEEEEEEcCCCCcHHHHhccC
Q 047923 147 NQLVGRESRVEIIESLLAAESKDVYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 147 ~~~vG~d~~~~~~~~~l~~~~~~~~vi~i~G~gGiGKTTla~~v 190 (190)
..++|....+.++...+..-...-..+-|.|-.|.|||++|+++
T Consensus 134 ~~lig~s~~~~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~i 177 (463)
T TIGR01818 134 AELIGEAPAMQEVFRAIGRLSRSDITVLINGESGTGKELVARAL 177 (463)
T ss_pred cceeecCHHHHHHHHHHHHHhCcCCeEEEECCCCCCHHHHHHHH
Confidence 35788888788877766543333234568899999999999863
No 414
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=81.01 E-value=0.9 Score=45.03 Aligned_cols=19 Identities=26% Similarity=0.263 Sum_probs=17.3
Q ss_pred EEEEEEcCCCCcHHHHhcc
Q 047923 171 YILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~~ 189 (190)
..++|+|..|.|||||++.
T Consensus 1195 ~~vAIVG~SGsGKSTl~~L 1213 (1466)
T PTZ00265 1195 KTTAIVGETGSGKSTVMSL 1213 (1466)
T ss_pred CEEEEECCCCCCHHHHHHH
Confidence 5789999999999999975
No 415
>PRK13796 GTPase YqeH; Provisional
Probab=80.98 E-value=1.8 Score=36.40 Aligned_cols=18 Identities=28% Similarity=0.425 Sum_probs=15.4
Q ss_pred EEEEEcCCCCcHHHHhcc
Q 047923 172 ILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 172 vi~i~G~gGiGKTTla~~ 189 (190)
-+.++|+.++||+||-.+
T Consensus 162 ~v~vvG~~NvGKSTLiN~ 179 (365)
T PRK13796 162 DVYVVGVTNVGKSTLINR 179 (365)
T ss_pred eEEEEcCCCCcHHHHHHH
Confidence 467899999999999764
No 416
>PLN03140 ABC transporter G family member; Provisional
Probab=80.96 E-value=1 Score=44.60 Aligned_cols=20 Identities=30% Similarity=0.436 Sum_probs=17.7
Q ss_pred eEEEEEEcCCCCcHHHHhcc
Q 047923 170 VYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~ 189 (190)
=.+++|.|..|.|||||.+.
T Consensus 906 Gel~aL~G~sGaGKTTLL~~ 925 (1470)
T PLN03140 906 GVLTALMGVSGAGKTTLMDV 925 (1470)
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 36899999999999999875
No 417
>PTZ00243 ABC transporter; Provisional
Probab=80.95 E-value=0.92 Score=45.27 Aligned_cols=19 Identities=32% Similarity=0.368 Sum_probs=17.2
Q ss_pred EEEEEEcCCCCcHHHHhcc
Q 047923 171 YILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~~ 189 (190)
..+||+|-.|.|||||++.
T Consensus 1337 ekVaIVGrTGSGKSTLl~l 1355 (1560)
T PTZ00243 1337 EKVGIVGRTGSGKSTLLLT 1355 (1560)
T ss_pred CEEEEECCCCCCHHHHHHH
Confidence 5689999999999999975
No 418
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=80.85 E-value=0.92 Score=39.01 Aligned_cols=20 Identities=25% Similarity=0.481 Sum_probs=17.0
Q ss_pred eEEEEEEcCCCCcHHHHhcc
Q 047923 170 VYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~ 189 (190)
+.-|+++|.+.+|||||-.+
T Consensus 158 ~adVglVG~pNaGKSTLLn~ 177 (424)
T PRK12297 158 LADVGLVGFPNVGKSTLLSV 177 (424)
T ss_pred cCcEEEEcCCCCCHHHHHHH
Confidence 44589999999999999764
No 419
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=80.72 E-value=0.86 Score=40.85 Aligned_cols=19 Identities=32% Similarity=0.146 Sum_probs=15.7
Q ss_pred EEEEEEcCCCCcHHHHhcc
Q 047923 171 YILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~~ 189 (190)
++.-|.|.+|.||||+...
T Consensus 161 ~~~vitGgpGTGKTt~v~~ 179 (586)
T TIGR01447 161 NFSLITGGPGTGKTTTVAR 179 (586)
T ss_pred CeEEEEcCCCCCHHHHHHH
Confidence 4677899999999997653
No 420
>PHA03132 thymidine kinase; Provisional
Probab=80.65 E-value=1.1 Score=39.89 Aligned_cols=21 Identities=33% Similarity=0.344 Sum_probs=18.4
Q ss_pred eEEEEEEcCCCCcHHHHhccC
Q 047923 170 VYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~v 190 (190)
...|.|-|.=|+||||+++.+
T Consensus 257 ~~fIv~EGidGsGKTTlik~L 277 (580)
T PHA03132 257 ACFLFLEGVMGVGKTTLLNHM 277 (580)
T ss_pred eEEEEEECCCCCCHHHHHHHH
Confidence 678889999999999998753
No 421
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=80.52 E-value=1.8 Score=38.37 Aligned_cols=36 Identities=19% Similarity=0.277 Sum_probs=26.2
Q ss_pred hhHHHHHHHhh-----hcCCCeEEEEEEcCCCCcHHHHhcc
Q 047923 154 SRVEIIESLLA-----AESKDVYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 154 ~~~~~~~~~l~-----~~~~~~~vi~i~G~gGiGKTTla~~ 189 (190)
..+.++..||. ...-+-+++=|.|..|.||||..+.
T Consensus 89 kKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkv 129 (634)
T KOG1970|consen 89 KKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKV 129 (634)
T ss_pred HhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHH
Confidence 34566677776 2223467999999999999997663
No 422
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=80.31 E-value=1.1 Score=39.62 Aligned_cols=21 Identities=33% Similarity=0.347 Sum_probs=17.7
Q ss_pred eEEEEEEcCCCCcHHHHhccC
Q 047923 170 VYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~v 190 (190)
=+-.||||.+|.||||+-+++
T Consensus 101 g~rygLiG~nG~Gkst~L~~i 121 (614)
T KOG0927|consen 101 GRRYGLIGPNGSGKSTFLRAI 121 (614)
T ss_pred CceEEEEcCCCCcHhHHHHHH
Confidence 356899999999999997753
No 423
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=80.26 E-value=0.95 Score=40.69 Aligned_cols=20 Identities=35% Similarity=0.418 Sum_probs=17.2
Q ss_pred EEEEEEcCCCCcHHHHhccC
Q 047923 171 YILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~~v 190 (190)
.-+-|||-.|.|||.|++++
T Consensus 315 NpL~LyG~sGsGKTHLL~AI 334 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAI 334 (617)
T ss_pred CcEEEECCCCCCHHHHHHHH
Confidence 44789999999999999864
No 424
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=80.22 E-value=0.97 Score=39.67 Aligned_cols=20 Identities=35% Similarity=0.493 Sum_probs=17.3
Q ss_pred eEEEEEEcCCCCcHHHHhcc
Q 047923 170 VYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~ 189 (190)
+.-|+|+|.+++|||||..+
T Consensus 159 ~adV~LVG~PNAGKSTLln~ 178 (500)
T PRK12296 159 VADVGLVGFPSAGKSSLISA 178 (500)
T ss_pred cceEEEEEcCCCCHHHHHHH
Confidence 45689999999999999764
No 425
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=80.19 E-value=1.1 Score=38.64 Aligned_cols=21 Identities=24% Similarity=0.389 Sum_probs=18.1
Q ss_pred CeEEEEEEcCCCCcHHHHhcc
Q 047923 169 DVYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 169 ~~~vi~i~G~gGiGKTTla~~ 189 (190)
.-..++|.|-.|.|||||++.
T Consensus 157 ~Gq~i~I~G~sG~GKStLl~~ 177 (438)
T PRK07721 157 KGQRVGIFAGSGVGKSTLMGM 177 (438)
T ss_pred CCcEEEEECCCCCCHHHHHHH
Confidence 456889999999999999874
No 426
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=80.12 E-value=1 Score=46.25 Aligned_cols=19 Identities=37% Similarity=0.541 Sum_probs=17.2
Q ss_pred EEEEEEcCCCCcHHHHhcc
Q 047923 171 YILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~~ 189 (190)
.++||.|..|.|||||.+.
T Consensus 1966 Ei~gLLG~NGAGKTTLlkm 1984 (2272)
T TIGR01257 1966 ECFGLLGVNGAGKTTTFKM 1984 (2272)
T ss_pred cEEEEECCCCCcHHHHHHH
Confidence 4789999999999999875
No 427
>PRK11058 GTPase HflX; Provisional
Probab=79.93 E-value=1.1 Score=38.49 Aligned_cols=21 Identities=29% Similarity=0.403 Sum_probs=17.8
Q ss_pred CeEEEEEEcCCCCcHHHHhcc
Q 047923 169 DVYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 169 ~~~vi~i~G~gGiGKTTla~~ 189 (190)
+...++|+|.+++|||||..+
T Consensus 196 ~~p~ValVG~~NaGKSSLlN~ 216 (426)
T PRK11058 196 DVPTVSLVGYTNAGKSTLFNR 216 (426)
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 356789999999999999764
No 428
>PRK06820 type III secretion system ATPase; Validated
Probab=79.90 E-value=1.1 Score=38.77 Aligned_cols=19 Identities=26% Similarity=0.548 Sum_probs=16.7
Q ss_pred EEEEEEcCCCCcHHHHhcc
Q 047923 171 YILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~~ 189 (190)
..++|.|-.|.|||||++.
T Consensus 164 qri~I~G~sG~GKStLl~~ 182 (440)
T PRK06820 164 QRIGIFAAAGVGKSTLLGM 182 (440)
T ss_pred CEEEEECCCCCChHHHHHH
Confidence 4679999999999999874
No 429
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=79.84 E-value=1 Score=41.28 Aligned_cols=20 Identities=30% Similarity=0.494 Sum_probs=18.0
Q ss_pred eEEEEEEcCCCCcHHHHhcc
Q 047923 170 VYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~ 189 (190)
...|+|+|.+++|||||..+
T Consensus 275 ~~~V~IvG~~nvGKSSL~n~ 294 (712)
T PRK09518 275 VGVVAIVGRPNVGKSTLVNR 294 (712)
T ss_pred CcEEEEECCCCCCHHHHHHH
Confidence 57899999999999999864
No 430
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=79.68 E-value=2.1 Score=38.46 Aligned_cols=18 Identities=50% Similarity=0.516 Sum_probs=15.0
Q ss_pred eEEEEEEcCCCCcHHHHh
Q 047923 170 VYILGIWGVGSIGKTTIA 187 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla 187 (190)
-.++-+-|-+|.||||+|
T Consensus 226 ~~ilVVQGaAGSGKTtiA 243 (747)
T COG3973 226 NKILVVQGAAGSGKTTIA 243 (747)
T ss_pred CCeEEEecCCCCCchhHH
Confidence 445667799999999998
No 431
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=79.47 E-value=1.2 Score=38.54 Aligned_cols=20 Identities=20% Similarity=0.380 Sum_probs=17.3
Q ss_pred eEEEEEEcCCCCcHHHHhcc
Q 047923 170 VYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~ 189 (190)
-..++|.|-.|.|||||++.
T Consensus 158 Gqri~I~G~sG~GKTtLL~~ 177 (442)
T PRK08927 158 GQRMGIFAGSGVGKSVLLSM 177 (442)
T ss_pred CCEEEEECCCCCCHHHHHHH
Confidence 45689999999999999864
No 432
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=79.39 E-value=1.2 Score=39.41 Aligned_cols=20 Identities=20% Similarity=0.308 Sum_probs=17.4
Q ss_pred eEEEEEEcCCCCcHHHHhcc
Q 047923 170 VYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~ 189 (190)
-..++|+|-.|.|||||...
T Consensus 347 g~~talvG~SGaGKSTLl~l 366 (559)
T COG4988 347 GQLTALVGASGAGKSTLLNL 366 (559)
T ss_pred CcEEEEECCCCCCHHHHHHH
Confidence 36789999999999999864
No 433
>PRK06315 type III secretion system ATPase; Provisional
Probab=79.22 E-value=1.1 Score=38.83 Aligned_cols=21 Identities=19% Similarity=0.330 Sum_probs=17.7
Q ss_pred eEEEEEEcCCCCcHHHHhccC
Q 047923 170 VYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~v 190 (190)
-..++|+|-.|.|||||++.+
T Consensus 164 Gq~i~I~G~sG~GKStLl~~I 184 (442)
T PRK06315 164 GQRIGIFAGAGVGKSSLLGMI 184 (442)
T ss_pred CcEEEEECCCCCCcchHHHHh
Confidence 356799999999999998753
No 434
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=78.99 E-value=2.2 Score=37.84 Aligned_cols=21 Identities=24% Similarity=0.208 Sum_probs=17.3
Q ss_pred CeEEEEEEcCCCCcHHHHhcc
Q 047923 169 DVYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 169 ~~~vi~i~G~gGiGKTTla~~ 189 (190)
.+..+-+.|.+|.|||+||..
T Consensus 537 ~lvSvLl~Gp~~sGKTaLAA~ 557 (744)
T KOG0741|consen 537 PLVSVLLEGPPGSGKTALAAK 557 (744)
T ss_pred cceEEEEecCCCCChHHHHHH
Confidence 356666889999999999964
No 435
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=78.87 E-value=1.1 Score=35.47 Aligned_cols=16 Identities=44% Similarity=0.503 Sum_probs=13.6
Q ss_pred EEEEcCCCCcHHHHhc
Q 047923 173 LGIWGVGSIGKTTIAR 188 (190)
Q Consensus 173 i~i~G~gGiGKTTla~ 188 (190)
.=|.|.+|+|||||-+
T Consensus 140 tLiigpP~~GKTTlLR 155 (308)
T COG3854 140 TLIIGPPQVGKTTLLR 155 (308)
T ss_pred eEEecCCCCChHHHHH
Confidence 4577999999999865
No 436
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=78.69 E-value=1.1 Score=40.41 Aligned_cols=19 Identities=37% Similarity=0.218 Sum_probs=16.0
Q ss_pred EEEEEEcCCCCcHHHHhcc
Q 047923 171 YILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~~ 189 (190)
++.-|.|-+|.||||+.+.
T Consensus 168 ~~~vItGgpGTGKTt~v~~ 186 (615)
T PRK10875 168 RISVISGGPGTGKTTTVAK 186 (615)
T ss_pred CeEEEEeCCCCCHHHHHHH
Confidence 4677899999999998754
No 437
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=78.62 E-value=1.2 Score=39.92 Aligned_cols=20 Identities=25% Similarity=0.297 Sum_probs=17.9
Q ss_pred eEEEEEEcCCCCcHHHHhcc
Q 047923 170 VYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~ 189 (190)
.++++|.|..+.|||||..+
T Consensus 87 ~p~V~I~Ghvd~GKTSLl~~ 106 (587)
T TIGR00487 87 PPVVTIMGHVDHGKTSLLDS 106 (587)
T ss_pred CCEEEEECCCCCCHHHHHHH
Confidence 57899999999999999864
No 438
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=78.60 E-value=1.8 Score=38.00 Aligned_cols=34 Identities=24% Similarity=0.231 Sum_probs=22.4
Q ss_pred HHHHHHHhhhcCCCeEEEEEEcCCCCcHHHHhcc
Q 047923 156 VEIIESLLAAESKDVYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 156 ~~~~~~~l~~~~~~~~vi~i~G~gGiGKTTla~~ 189 (190)
...+.++|..+-..-.++-|.|-+|.|||+||..
T Consensus 259 i~~lD~~l~GG~~~g~~~li~G~~G~GKT~l~~~ 292 (509)
T PRK09302 259 VPDLDEMLGGGFFRGSIILVSGATGTGKTLLASK 292 (509)
T ss_pred cHHHHHhhcCCCCCCcEEEEEcCCCCCHHHHHHH
Confidence 3344455543322345777899999999999854
No 439
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.53 E-value=1.2 Score=39.34 Aligned_cols=19 Identities=37% Similarity=0.415 Sum_probs=16.6
Q ss_pred EEEEEEcCCCCcHHHHhcc
Q 047923 171 YILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~~ 189 (190)
.-+||+|-.|.||||+-++
T Consensus 379 ekVaIvG~nGsGKSTilr~ 397 (591)
T KOG0057|consen 379 EKVAIVGSNGSGKSTILRL 397 (591)
T ss_pred CEEEEECCCCCCHHHHHHH
Confidence 3579999999999999875
No 440
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=78.48 E-value=1 Score=38.48 Aligned_cols=21 Identities=33% Similarity=0.314 Sum_probs=18.4
Q ss_pred eEEEEEEcCCCCcHHHHhccC
Q 047923 170 VYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~v 190 (190)
-.-+=|||-.|.|||-|++++
T Consensus 113 ~nplfi~G~~GlGKTHLl~Ai 133 (408)
T COG0593 113 YNPLFIYGGVGLGKTHLLQAI 133 (408)
T ss_pred CCcEEEECCCCCCHHHHHHHH
Confidence 567889999999999999864
No 441
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=78.45 E-value=1.2 Score=38.28 Aligned_cols=20 Identities=25% Similarity=0.419 Sum_probs=17.5
Q ss_pred eEEEEEEcCCCCcHHHHhcc
Q 047923 170 VYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~ 189 (190)
-..++|.|-.|.|||||.+.
T Consensus 155 GqrigI~G~sG~GKSTLL~~ 174 (433)
T PRK07594 155 GQRVGIFSAPGVGKSTLLAM 174 (433)
T ss_pred CCEEEEECCCCCCccHHHHH
Confidence 45789999999999999875
No 442
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=78.37 E-value=1.1 Score=38.71 Aligned_cols=20 Identities=15% Similarity=0.346 Sum_probs=17.2
Q ss_pred eEEEEEEcCCCCcHHHHhcc
Q 047923 170 VYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~ 189 (190)
-..++|.|-.|.|||||.+.
T Consensus 175 Gqri~I~G~sG~GKTTLL~~ 194 (455)
T PRK07960 175 GQRMGLFAGSGVGKSVLLGM 194 (455)
T ss_pred CcEEEEECCCCCCccHHHHH
Confidence 45689999999999999864
No 443
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=78.27 E-value=1.6 Score=38.66 Aligned_cols=23 Identities=39% Similarity=0.404 Sum_probs=19.9
Q ss_pred CCeEEEEEEcCCCCcHHHHhccC
Q 047923 168 KDVYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 168 ~~~~vi~i~G~gGiGKTTla~~v 190 (190)
.+|+=|=+||.+|.|||-+|+++
T Consensus 254 ~HVKGiLLyGPPGTGKTLiARqI 276 (744)
T KOG0741|consen 254 KHVKGILLYGPPGTGKTLIARQI 276 (744)
T ss_pred cceeeEEEECCCCCChhHHHHHH
Confidence 45787888999999999999864
No 444
>PRK06749 replicative DNA helicase; Provisional
Probab=78.15 E-value=4.5 Score=34.84 Aligned_cols=40 Identities=18% Similarity=0.209 Sum_probs=26.0
Q ss_pred cccccchhHHHHHHHhhhcCCCeEEEEEEcCCCCcHHHHhc
Q 047923 148 QLVGRESRVEIIESLLAAESKDVYILGIWGVGSIGKTTIAR 188 (190)
Q Consensus 148 ~~vG~d~~~~~~~~~l~~~~~~~~vi~i~G~gGiGKTTla~ 188 (190)
...|.......+.+++. +-..-.++-|-|.+|+||||+|-
T Consensus 165 ~~~Gi~TG~~~LD~~t~-Gl~~G~LiiIaarPgmGKTafal 204 (428)
T PRK06749 165 EITGIETGYTSLNKMTC-GLQEGDFVVLGARPSMGKTAFAL 204 (428)
T ss_pred CCCCccCCcHHHHHHhC-CCCCCcEEEEEeCCCCCchHHHH
Confidence 34566666666666543 21223466677999999999985
No 445
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=78.11 E-value=1.2 Score=37.77 Aligned_cols=18 Identities=33% Similarity=0.521 Sum_probs=15.3
Q ss_pred EEEEEcCCCCcHHHHhcc
Q 047923 172 ILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 172 vi~i~G~gGiGKTTla~~ 189 (190)
-|=+.|-|+.||||+.|+
T Consensus 60 kiLLLG~geSGKSTi~KQ 77 (389)
T PF00503_consen 60 KILLLGSGESGKSTILKQ 77 (389)
T ss_dssp EEEEEESTTSSHHHHHHH
T ss_pred eEEEECCCCcchhhHHHH
Confidence 455889999999999885
No 446
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=77.99 E-value=1.4 Score=37.80 Aligned_cols=21 Identities=24% Similarity=0.433 Sum_probs=17.5
Q ss_pred CeEEEEEEcCCCCcHHHHhcc
Q 047923 169 DVYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 169 ~~~vi~i~G~gGiGKTTla~~ 189 (190)
.-..++|.|-.|.|||||.+.
T Consensus 144 ~Gq~~~I~G~sG~GKStLl~~ 164 (422)
T TIGR02546 144 EGQRIGIFAGAGVGKSTLLGM 164 (422)
T ss_pred CCCEEEEECCCCCChHHHHHH
Confidence 345679999999999999864
No 447
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.
Probab=77.94 E-value=2.7 Score=34.25 Aligned_cols=20 Identities=25% Similarity=0.421 Sum_probs=16.7
Q ss_pred eEEEEEEcCCCCcHHHHhcc
Q 047923 170 VYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~ 189 (190)
-..+=++|-||.||||+.+.
T Consensus 76 ~~~~~l~G~g~nGKStl~~~ 95 (304)
T TIGR01613 76 QKLFFLYGNGGNGKSTFQNL 95 (304)
T ss_pred eEEEEEECCCCCcHHHHHHH
Confidence 45677889999999999864
No 448
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=77.91 E-value=2.2 Score=42.56 Aligned_cols=19 Identities=37% Similarity=0.391 Sum_probs=16.7
Q ss_pred EEEEEEcCCCCcHHHHhcc
Q 047923 171 YILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~~ 189 (190)
+++.|-|.+|.||||+.+.
T Consensus 853 r~~~IqG~AGTGKTT~l~~ 871 (1623)
T PRK14712 853 RFTVVQGYAGVGKTTQFRA 871 (1623)
T ss_pred ceEEEEeCCCCCHHHHHHH
Confidence 6899999999999999653
No 449
>PF10137 TIR-like: Predicted nucleotide-binding protein containing TIR-like domain; InterPro: IPR019302 This entry represents a TIR-like domain found in a family of prokaryotic predicted nucleotide-binding proteins. Their exact function has not, as yet, been defined.
Probab=77.86 E-value=3.6 Score=29.19 Aligned_cols=37 Identities=24% Similarity=0.399 Sum_probs=27.0
Q ss_pred CeeEEEeC-CCCCcccchHHHHHHhhcccceEEEecCC
Q 047923 4 NIQTFIDD-QLNRGDEISESIAYAIESPAISVIIFSEG 40 (190)
Q Consensus 4 gi~~f~d~-~~~~g~~~~~~l~~ai~~s~~~ivv~S~~ 40 (190)
|+.+.+-. ....|..+.+.|.+++.++..+|++|+|+
T Consensus 24 ~~ep~i~~~~~~~g~tiie~le~~~~~~~faIvl~TpD 61 (125)
T PF10137_consen 24 GLEPIIWHEQPNLGQTIIEKLEEAADSVDFAIVLFTPD 61 (125)
T ss_pred CCceEEeecCCCCCCchHHHHHHHhccCCEEEEEEccc
Confidence 55555554 45677777788888888888888888874
No 450
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=77.83 E-value=1.5 Score=37.68 Aligned_cols=20 Identities=30% Similarity=0.441 Sum_probs=17.2
Q ss_pred eEEEEEEcCCCCcHHHHhcc
Q 047923 170 VYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~ 189 (190)
-..++|.|-.|.|||||.+.
T Consensus 140 Gq~i~I~G~sG~GKTtLl~~ 159 (418)
T TIGR03498 140 GQRLGIFAGSGVGKSTLLSM 159 (418)
T ss_pred CcEEEEECCCCCChHHHHHH
Confidence 35689999999999999864
No 451
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=77.65 E-value=1.2 Score=34.89 Aligned_cols=15 Identities=33% Similarity=0.561 Sum_probs=13.2
Q ss_pred EEcCCCCcHHHHhcc
Q 047923 175 IWGVGSIGKTTIARA 189 (190)
Q Consensus 175 i~G~gGiGKTTla~~ 189 (190)
++|..|.|||||-|.
T Consensus 45 lVGaNGaGKtTlLKi 59 (291)
T KOG2355|consen 45 LVGANGAGKTTLLKI 59 (291)
T ss_pred EEecCCCchhhhHHH
Confidence 579999999999874
No 452
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=77.65 E-value=1.3 Score=42.59 Aligned_cols=20 Identities=35% Similarity=0.476 Sum_probs=17.3
Q ss_pred eEEEEEEcCCCCcHHHHhcc
Q 047923 170 VYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~ 189 (190)
-++..|.|.+|.||||+.+.
T Consensus 397 ~r~~~v~G~AGTGKTt~l~~ 416 (1102)
T PRK13826 397 ARIAAVVGRAGAGKTTMMKA 416 (1102)
T ss_pred CCeEEEEeCCCCCHHHHHHH
Confidence 36788999999999999875
No 453
>PLN03232 ABC transporter C family member; Provisional
Probab=77.62 E-value=1.3 Score=43.98 Aligned_cols=20 Identities=30% Similarity=0.340 Sum_probs=17.6
Q ss_pred EEEEEEcCCCCcHHHHhccC
Q 047923 171 YILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~~v 190 (190)
..++|+|..|.|||||++++
T Consensus 644 e~vaIvG~sGSGKSTLl~lL 663 (1495)
T PLN03232 644 SLVAIVGGTGEGKTSLISAM 663 (1495)
T ss_pred CEEEEECCCCCcHHHHHHHH
Confidence 47899999999999999853
No 454
>cd00484 PEPCK_ATP Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity, this model describes the ATP-dependent groups.
Probab=77.54 E-value=1.6 Score=38.16 Aligned_cols=19 Identities=26% Similarity=0.399 Sum_probs=16.4
Q ss_pred eEEEEEEcCCCCcHHHHhc
Q 047923 170 VYILGIWGVGSIGKTTIAR 188 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~ 188 (190)
-.+..+.|..|.|||||+.
T Consensus 209 ~~~~~ffGlSGtGKtTLsa 227 (508)
T cd00484 209 GDVALFFGLSGTGKTTLSA 227 (508)
T ss_pred CCEEEEEecCCCCHHHhcc
Confidence 3568889999999999985
No 455
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=77.29 E-value=1.6 Score=37.41 Aligned_cols=20 Identities=25% Similarity=0.408 Sum_probs=17.1
Q ss_pred eEEEEEEcCCCCcHHHHhcc
Q 047923 170 VYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~ 189 (190)
-..++|.|-.|.|||||.+.
T Consensus 137 Gq~~~I~G~sG~GKTtLl~~ 156 (411)
T TIGR03496 137 GQRMGIFAGSGVGKSTLLGM 156 (411)
T ss_pred CcEEEEECCCCCCHHHHHHH
Confidence 45689999999999999764
No 456
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=77.25 E-value=1.4 Score=39.93 Aligned_cols=17 Identities=29% Similarity=0.294 Sum_probs=14.0
Q ss_pred EEEEEcCCCCcHHHHhc
Q 047923 172 ILGIWGVGSIGKTTIAR 188 (190)
Q Consensus 172 vi~i~G~gGiGKTTla~ 188 (190)
..-|.|.+|.||||++.
T Consensus 175 ~~lI~GpPGTGKT~t~~ 191 (637)
T TIGR00376 175 LFLIHGPPGTGKTRTLV 191 (637)
T ss_pred eEEEEcCCCCCHHHHHH
Confidence 34499999999998764
No 457
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=77.23 E-value=1.6 Score=36.18 Aligned_cols=19 Identities=47% Similarity=0.531 Sum_probs=16.9
Q ss_pred eEEEEEEcCCCCcHHHHhc
Q 047923 170 VYILGIWGVGSIGKTTIAR 188 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~ 188 (190)
-+++-|+|..|.||||||-
T Consensus 53 G~ivEi~G~~ssGKttLaL 71 (322)
T PF00154_consen 53 GRIVEIYGPESSGKTTLAL 71 (322)
T ss_dssp TSEEEEEESTTSSHHHHHH
T ss_pred CceEEEeCCCCCchhhhHH
Confidence 4689999999999999984
No 458
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=77.21 E-value=1.3 Score=43.42 Aligned_cols=21 Identities=29% Similarity=0.268 Sum_probs=18.1
Q ss_pred eEEEEEEcCCCCcHHHHhccC
Q 047923 170 VYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~v 190 (190)
-.-|||+|--|.||+||+.++
T Consensus 1166 ~eKVGIVGRTGaGKSSL~~aL 1186 (1381)
T KOG0054|consen 1166 GEKVGIVGRTGAGKSSLILAL 1186 (1381)
T ss_pred CceEEEeCCCCCCHHHHHHHH
Confidence 456899999999999998763
No 459
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=77.20 E-value=2.4 Score=42.73 Aligned_cols=19 Identities=37% Similarity=0.391 Sum_probs=17.1
Q ss_pred EEEEEEcCCCCcHHHHhcc
Q 047923 171 YILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~~ 189 (190)
+++.|.|.+|.||||+.+.
T Consensus 985 r~~~I~G~AGTGKTT~l~~ 1003 (1747)
T PRK13709 985 RFTVVQGYAGVGKTTQFRA 1003 (1747)
T ss_pred cEEEEEeCCCCCHHHHHHH
Confidence 6899999999999999764
No 460
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=77.14 E-value=1.6 Score=37.76 Aligned_cols=20 Identities=25% Similarity=0.408 Sum_probs=17.1
Q ss_pred eEEEEEEcCCCCcHHHHhcc
Q 047923 170 VYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~ 189 (190)
-..++|.|-.|.|||||.+.
T Consensus 163 Gq~~~I~G~sG~GKStLl~~ 182 (440)
T TIGR01026 163 GQRIGIFAGSGVGKSTLLGM 182 (440)
T ss_pred CcEEEEECCCCCCHHHHHHH
Confidence 45679999999999999864
No 461
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=77.08 E-value=1.7 Score=41.03 Aligned_cols=18 Identities=33% Similarity=0.433 Sum_probs=16.5
Q ss_pred EEEEEEcCCCCcHHHHhc
Q 047923 171 YILGIWGVGSIGKTTIAR 188 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~ 188 (190)
.+++|.|..|.|||||++
T Consensus 634 eiv~VtGvsGSGKSTLl~ 651 (924)
T TIGR00630 634 LFTCITGVSGSGKSTLIN 651 (924)
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 478999999999999986
No 462
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.05 E-value=4.4 Score=35.43 Aligned_cols=20 Identities=35% Similarity=0.767 Sum_probs=16.7
Q ss_pred CeEEEEEEcCCCCcHHH-Hhc
Q 047923 169 DVYILGIWGVGSIGKTT-IAR 188 (190)
Q Consensus 169 ~~~vi~i~G~gGiGKTT-la~ 188 (190)
+.-+|.++|..|+||+| ||+
T Consensus 377 rPYVi~fvGVNGVGKSTNLAK 397 (587)
T KOG0781|consen 377 RPYVISFVGVNGVGKSTNLAK 397 (587)
T ss_pred CCeEEEEEeecCccccchHHH
Confidence 46799999999999976 554
No 463
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=76.99 E-value=5.5 Score=37.53 Aligned_cols=46 Identities=11% Similarity=0.005 Sum_probs=30.7
Q ss_pred ccccccccchhHHHHHHHhhhcCC-----C---------e-----EEEEEEcCCCCcHHHHhccC
Q 047923 145 KENQLVGRESRVEIIESLLAAESK-----D---------V-----YILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 145 ~~~~~vG~d~~~~~~~~~l~~~~~-----~---------~-----~vi~i~G~gGiGKTTla~~v 190 (190)
....+.|.+.-++.+.-.|-.+.. + . .-|=|+|-+|+|||+||+++
T Consensus 448 iaP~I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~I 512 (915)
T PTZ00111 448 FAPSIKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYT 512 (915)
T ss_pred hCCeEECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHH
Confidence 345789999877777544432210 0 1 14558999999999999864
No 464
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=76.98 E-value=1.4 Score=43.86 Aligned_cols=20 Identities=20% Similarity=0.303 Sum_probs=17.5
Q ss_pred EEEEEEcCCCCcHHHHhccC
Q 047923 171 YILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~~v 190 (190)
..++|+|..|.|||||.+++
T Consensus 665 ~~v~IvG~~GsGKSTLl~~l 684 (1522)
T TIGR00957 665 ALVAVVGQVGCGKSSLLSAL 684 (1522)
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999853
No 465
>PRK09099 type III secretion system ATPase; Provisional
Probab=76.66 E-value=1.7 Score=37.57 Aligned_cols=21 Identities=24% Similarity=0.465 Sum_probs=17.8
Q ss_pred CeEEEEEEcCCCCcHHHHhcc
Q 047923 169 DVYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 169 ~~~vi~i~G~gGiGKTTla~~ 189 (190)
.-..++|.|-.|.|||||.+.
T Consensus 162 ~Gq~~~I~G~sG~GKTtLl~~ 182 (441)
T PRK09099 162 EGQRMGIFAPAGVGKSTLMGM 182 (441)
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 345789999999999999875
No 466
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=76.60 E-value=1.6 Score=37.42 Aligned_cols=21 Identities=24% Similarity=0.381 Sum_probs=17.8
Q ss_pred CeEEEEEEcCCCCcHHHHhcc
Q 047923 169 DVYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 169 ~~~vi~i~G~gGiGKTTla~~ 189 (190)
.-..++|.|-.|.|||||.+.
T Consensus 136 ~Gqri~I~G~sG~GKTtLl~~ 156 (413)
T TIGR03497 136 KGQRVGIFAGSGVGKSTLLGM 156 (413)
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 346789999999999999864
No 467
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=76.60 E-value=1.4 Score=45.17 Aligned_cols=19 Identities=32% Similarity=0.324 Sum_probs=17.2
Q ss_pred EEEEEEcCCCCcHHHHhcc
Q 047923 171 YILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~~ 189 (190)
.+++|.|..|.|||||.+.
T Consensus 957 ei~aLLG~NGAGKSTLLki 975 (2272)
T TIGR01257 957 QITAFLGHNGAGKTTTLSI 975 (2272)
T ss_pred cEEEEECCCCChHHHHHHH
Confidence 5789999999999999875
No 468
>PRK06936 type III secretion system ATPase; Provisional
Probab=76.52 E-value=1.7 Score=37.53 Aligned_cols=21 Identities=24% Similarity=0.401 Sum_probs=17.8
Q ss_pred CeEEEEEEcCCCCcHHHHhcc
Q 047923 169 DVYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 169 ~~~vi~i~G~gGiGKTTla~~ 189 (190)
+-..++|.|-.|.|||||.+.
T Consensus 161 ~Gq~~~I~G~sG~GKStLl~~ 181 (439)
T PRK06936 161 EGQRMGIFAAAGGGKSTLLAS 181 (439)
T ss_pred CCCEEEEECCCCCChHHHHHH
Confidence 345789999999999999875
No 469
>TIGR00224 pckA phosphoenolpyruvate carboxykinase (ATP). Involved in the gluconeogenesis pathway. It converts oxaloacetic acid to phosphoenolpyruvate using ATP. Enzyme is a monomer. The reaction is also catalysed by phosphoenolpyruvate carboxykinase (GTP) (EC 4.1.1.32) using GTP instead of ATP, described in PROSITE:PDOC00421
Probab=76.46 E-value=1.8 Score=38.06 Aligned_cols=18 Identities=28% Similarity=0.490 Sum_probs=15.8
Q ss_pred EEEEEEcCCCCcHHHHhc
Q 047923 171 YILGIWGVGSIGKTTIAR 188 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~ 188 (190)
.+..+.|..|.|||||+.
T Consensus 234 ~~~~ffGlSGtGKTTLsa 251 (532)
T TIGR00224 234 DVALFFGLSGTGKTTLST 251 (532)
T ss_pred CEEEEEecCCCChhhhhc
Confidence 467889999999999985
No 470
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=76.46 E-value=2.7 Score=35.96 Aligned_cols=33 Identities=24% Similarity=0.284 Sum_probs=23.2
Q ss_pred hHHHHHHHhhhcCCCeEEEEEEcCCCCcHHHHh
Q 047923 155 RVEIIESLLAAESKDVYILGIWGVGSIGKTTIA 187 (190)
Q Consensus 155 ~~~~~~~~l~~~~~~~~vi~i~G~gGiGKTTla 187 (190)
...++...|..+-..-.++-|=|-+||||+||.
T Consensus 78 g~~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLL 110 (456)
T COG1066 78 GIEELDRVLGGGLVPGSVILIGGDPGIGKSTLL 110 (456)
T ss_pred ChHHHHhhhcCCcccccEEEEccCCCCCHHHHH
Confidence 345555656544334467888899999999985
No 471
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=75.72 E-value=2.8 Score=36.47 Aligned_cols=45 Identities=29% Similarity=0.381 Sum_probs=35.4
Q ss_pred ccccccccchhHHHHHHHhhhcC-CCeEEEEEEcCCCCcHHHHhccC
Q 047923 145 KENQLVGRESRVEIIESLLAAES-KDVYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 145 ~~~~~vG~d~~~~~~~~~l~~~~-~~~~vi~i~G~gGiGKTTla~~v 190 (190)
....++|+..-++++...+..-. .+..| =|.|-.|.||-.+|++|
T Consensus 139 ~~~~liG~S~am~~l~~~i~kvA~s~a~V-LI~GESGtGKElvAr~I 184 (464)
T COG2204 139 LGGELVGESPAMQQLRRLIAKVAPSDASV-LITGESGTGKELVARAI 184 (464)
T ss_pred ccCCceecCHHHHHHHHHHHHHhCCCCCE-EEECCCCCcHHHHHHHH
Confidence 45679999999999988886532 23444 48999999999999874
No 472
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=75.71 E-value=1.6 Score=43.37 Aligned_cols=20 Identities=20% Similarity=0.292 Sum_probs=17.6
Q ss_pred EEEEEEcCCCCcHHHHhccC
Q 047923 171 YILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~~v 190 (190)
.+++|.|..|.|||||.+++
T Consensus 453 ~~~~I~G~~GsGKSTLl~~l 472 (1490)
T TIGR01271 453 QLLAVAGSTGSGKSSLLMMI 472 (1490)
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 57899999999999998753
No 473
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=75.71 E-value=1.5 Score=40.07 Aligned_cols=19 Identities=26% Similarity=0.263 Sum_probs=16.0
Q ss_pred EEEEEcCCCCcHHHHhccC
Q 047923 172 ILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 172 vi~i~G~gGiGKTTla~~v 190 (190)
-|=|.|-.|+|||+||+++
T Consensus 433 ~Ill~G~~GsGKT~L~kal 451 (952)
T KOG0735|consen 433 NILLNGPKGSGKTNLVKAL 451 (952)
T ss_pred cEEEeCCCCCCHhHHHHHH
Confidence 3558899999999999863
No 474
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=75.53 E-value=2.7 Score=40.00 Aligned_cols=18 Identities=17% Similarity=0.255 Sum_probs=14.8
Q ss_pred EEEEEcCCCCcHHHHhcc
Q 047923 172 ILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 172 vi~i~G~gGiGKTTla~~ 189 (190)
+..|.|.+|.||||+.+.
T Consensus 364 v~vv~G~AGTGKTT~l~~ 381 (988)
T PRK13889 364 LGVVVGYAGTGKSAMLGV 381 (988)
T ss_pred eEEEEeCCCCCHHHHHHH
Confidence 445999999999998653
No 475
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=75.51 E-value=2.9 Score=34.98 Aligned_cols=41 Identities=22% Similarity=0.246 Sum_probs=30.4
Q ss_pred ccccccchhHHHHHHHhhhc--CCCeEEEEEEcCCCCcHHHHh
Q 047923 147 NQLVGRESRVEIIESLLAAE--SKDVYILGIWGVGSIGKTTIA 187 (190)
Q Consensus 147 ~~~vG~d~~~~~~~~~l~~~--~~~~~vi~i~G~gGiGKTTla 187 (190)
..++|......++..|+... ...-..+-|+|..|.|||+|.
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li 66 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILI 66 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEee
Confidence 46889888888888888752 112344667799999999985
No 476
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=75.46 E-value=3.5 Score=31.60 Aligned_cols=19 Identities=37% Similarity=0.478 Sum_probs=16.2
Q ss_pred EEEEEEcCCCCcHHHHhcc
Q 047923 171 YILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~~ 189 (190)
.++-+.|-.|+||||..+.
T Consensus 53 ~~lvl~G~QG~GKStf~~~ 71 (198)
T PF05272_consen 53 TVLVLVGKQGIGKSTFFRK 71 (198)
T ss_pred eeeeEecCCcccHHHHHHH
Confidence 4677899999999998764
No 477
>PTZ00311 phosphoenolpyruvate carboxykinase; Provisional
Probab=75.20 E-value=2.1 Score=37.88 Aligned_cols=19 Identities=26% Similarity=0.450 Sum_probs=16.1
Q ss_pred EEEEEEcCCCCcHHHHhcc
Q 047923 171 YILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~~ 189 (190)
.+..+.|..|.|||||+..
T Consensus 257 ~~~~ffGlSGtGKtTLsa~ 275 (561)
T PTZ00311 257 DVTLFFGLSGTGKTTLSAD 275 (561)
T ss_pred CEEEEEccCCCCHHHhccC
Confidence 4677899999999999853
No 478
>PLN03126 Elongation factor Tu; Provisional
Probab=75.16 E-value=3.5 Score=36.09 Aligned_cols=21 Identities=33% Similarity=0.319 Sum_probs=18.4
Q ss_pred CeEEEEEEcCCCCcHHHHhcc
Q 047923 169 DVYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 169 ~~~vi~i~G~gGiGKTTla~~ 189 (190)
....++|+|..+.|||||+.+
T Consensus 80 ~~~ni~iiGhvd~GKSTLi~~ 100 (478)
T PLN03126 80 PHVNIGTIGHVDHGKTTLTAA 100 (478)
T ss_pred CeeEEEEECCCCCCHHHHHHH
Confidence 367799999999999999875
No 479
>PLN03130 ABC transporter C family member; Provisional
Probab=74.74 E-value=1.8 Score=43.52 Aligned_cols=20 Identities=30% Similarity=0.378 Sum_probs=17.6
Q ss_pred EEEEEEcCCCCcHHHHhccC
Q 047923 171 YILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~~v 190 (190)
..++|+|..|.|||||++++
T Consensus 644 e~vaIvG~sGSGKSTLl~lL 663 (1622)
T PLN03130 644 SLVAIVGSTGEGKTSLISAM 663 (1622)
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 57899999999999999863
No 480
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=74.66 E-value=1.8 Score=34.95 Aligned_cols=17 Identities=41% Similarity=0.247 Sum_probs=14.9
Q ss_pred EEEEEEcCCCCcHHHHh
Q 047923 171 YILGIWGVGSIGKTTIA 187 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla 187 (190)
.-++|.|-.|.||||||
T Consensus 70 Qr~~Ifg~~g~GKt~L~ 86 (274)
T cd01132 70 QRELIIGDRQTGKTAIA 86 (274)
T ss_pred CEEEeeCCCCCCccHHH
Confidence 35789999999999996
No 481
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=74.55 E-value=1.6 Score=37.90 Aligned_cols=18 Identities=28% Similarity=0.475 Sum_probs=15.8
Q ss_pred EEEEEEcCCCCcHHHHhc
Q 047923 171 YILGIWGVGSIGKTTIAR 188 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~ 188 (190)
.-+||.|-.|+|||||+.
T Consensus 144 QR~gIfa~~G~GKt~Ll~ 161 (461)
T PRK12597 144 GKTGLFGGAGVGKTVLMM 161 (461)
T ss_pred CEEEeecCCCCChhHHHH
Confidence 458999999999999974
No 482
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=74.42 E-value=2.2 Score=40.43 Aligned_cols=19 Identities=26% Similarity=0.358 Sum_probs=16.9
Q ss_pred EEEEEEcCCCCcHHHHhcc
Q 047923 171 YILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~~ 189 (190)
.+++|.|..|.|||||++.
T Consensus 636 eivgVtGvsGSGKSTLl~~ 654 (943)
T PRK00349 636 KFTCVTGVSGSGKSTLINE 654 (943)
T ss_pred CEEEEEcCCCCCHHHHHHH
Confidence 4799999999999999863
No 483
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=74.36 E-value=1.6 Score=37.87 Aligned_cols=19 Identities=26% Similarity=0.576 Sum_probs=16.1
Q ss_pred EEEEEEcCCCCcHHHHhcc
Q 047923 171 YILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~~ 189 (190)
.-++|.|-.|+|||||+..
T Consensus 145 QR~gIfa~~GvGKt~Ll~~ 163 (463)
T PRK09280 145 GKIGLFGGAGVGKTVLIQE 163 (463)
T ss_pred CEEEeecCCCCChhHHHHH
Confidence 4578999999999998753
No 484
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=74.31 E-value=3.1 Score=37.90 Aligned_cols=46 Identities=26% Similarity=0.252 Sum_probs=35.8
Q ss_pred cccccccccchhHHHHHHHhhh--cCCC-eEEEEEEcCCCCcHHHHhcc
Q 047923 144 DKENQLVGRESRVEIIESLLAA--ESKD-VYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 144 ~~~~~~vG~d~~~~~~~~~l~~--~~~~-~~vi~i~G~gGiGKTTla~~ 189 (190)
.++..+-+||.+..+|...+.. ...+ -..+-|-|.+|.|||.....
T Consensus 393 ~vp~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~ 441 (767)
T KOG1514|consen 393 AVPESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLE 441 (767)
T ss_pred hccccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHH
Confidence 3556788999999999998864 2223 45888999999999988654
No 485
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=74.30 E-value=1.8 Score=35.06 Aligned_cols=42 Identities=19% Similarity=0.273 Sum_probs=27.4
Q ss_pred cccccchhHHHHHHHhhhcC---CC--------eEEEEEEcCCCCcHHHHhcc
Q 047923 148 QLVGRESRVEIIESLLAAES---KD--------VYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 148 ~~vG~d~~~~~~~~~l~~~~---~~--------~~vi~i~G~gGiGKTTla~~ 189 (190)
++=|.|...+++.+.+-... ++ -.=+-.||.+|.|||-+|++
T Consensus 172 DiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARA 224 (424)
T KOG0652|consen 172 DIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARA 224 (424)
T ss_pred ccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHH
Confidence 45577777777766543211 00 12234689999999999985
No 486
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=73.99 E-value=1.8 Score=35.07 Aligned_cols=18 Identities=11% Similarity=0.182 Sum_probs=15.3
Q ss_pred EEEEEEcCCCCcHHHHhc
Q 047923 171 YILGIWGVGSIGKTTIAR 188 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~ 188 (190)
.-++|.|-.|+|||||+.
T Consensus 70 QR~gIfgg~GvGKt~L~~ 87 (276)
T cd01135 70 QKIPIFSGSGLPHNELAA 87 (276)
T ss_pred CEEEeecCCCCChhHHHH
Confidence 346899999999999875
No 487
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=73.45 E-value=2 Score=34.87 Aligned_cols=19 Identities=37% Similarity=0.352 Sum_probs=16.2
Q ss_pred EEEEEcCCCCcHHHHhccC
Q 047923 172 ILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 172 vi~i~G~gGiGKTTla~~v 190 (190)
=+-+||.+|.|||-+|++|
T Consensus 213 gvllygppgtgktl~arav 231 (435)
T KOG0729|consen 213 GVLLYGPPGTGKTLCARAV 231 (435)
T ss_pred ceEEeCCCCCchhHHHHHH
Confidence 3557999999999999975
No 488
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=73.32 E-value=5.6 Score=32.49 Aligned_cols=42 Identities=17% Similarity=0.103 Sum_probs=28.0
Q ss_pred cccccccchhHHHHHHHhhhcCCCeEEEEEEcCCCCcHHHHhc
Q 047923 146 ENQLVGRESRVEIIESLLAAESKDVYILGIWGVGSIGKTTIAR 188 (190)
Q Consensus 146 ~~~~vG~d~~~~~~~~~l~~~~~~~~vi~i~G~gGiGKTTla~ 188 (190)
..+-||.|+.-.++.+.--...-... |--+|-.|+|||||..
T Consensus 19 l~GHvGFdsLPdQLV~ksv~~GF~FN-ilCvGETg~GKsTLmd 60 (406)
T KOG3859|consen 19 LAGHVGFDSLPDQLVNKSVSQGFCFN-ILCVGETGLGKSTLMD 60 (406)
T ss_pred ecCccCcccChHHHHHHHHhcCceEE-EEEeccCCccHHHHHH
Confidence 35789999877777665433322222 3345999999999964
No 489
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=73.04 E-value=2 Score=36.04 Aligned_cols=19 Identities=32% Similarity=0.200 Sum_probs=16.6
Q ss_pred EEEEEEcCCCCcHHHHhcc
Q 047923 171 YILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~~ 189 (190)
..++|.|-.|.|||+|+++
T Consensus 158 qr~~I~G~~G~GKT~L~~~ 176 (369)
T cd01134 158 GTAAIPGPFGCGKTVIQQS 176 (369)
T ss_pred CEEEEECCCCCChHHHHHH
Confidence 4688999999999999875
No 490
>PF01293 PEPCK_ATP: Phosphoenolpyruvate carboxykinase The Prosite pattern is specific to the ATP binding region; InterPro: IPR001272 Phosphoenolpyruvate carboxykinase (PEPCK) catalyses the first committed (rate-limiting) step in hepatic gluconeogenesis, namely the reversible decarboxylation of oxaloacetate to phosphoenolpyruvate (PEP) and carbon dioxide, using either ATP or GTP as a source of phosphate. The ATP-utilising (4.1.1.49 from EC) and GTP-utilising (4.1.1.32 from EC) enzymes form two divergent subfamilies, which have little sequence similarity but which retain conserved active site residues. ATP-utilising PEPCKs are monomers or oligomers of identical subunits found in certain bacteria, yeast, trypanosomatids, and plants, while GTP-utilising PEPCKs are mainly monomers found in animals and some bacteria []. Both require divalent cations for activity, such as magnesium or manganese. One cation interacts with the enzyme at metal binding site 1 to elicit activation, while the second cation interacts at metal binding site 2 to serve as a metal-nucleotide substrate. In bacteria, fungi and plants, PEPCK is involved in the glyoxylate bypass, an alternative to the tricarboxylic acid cycle. PEPCK helps to regulate blood glucose levels. The rate of gluconeogenesis can be controlled through transcriptional regulation of the PEPCK gene by cAMP (the mediator of glucagon and catecholamines), glucocorticoids and insulin. In general, PEPCK expression is induced by glucagon, catecholamines and glucocorticoids during periods of fasting and in response to stress, but is inhibited by (glucose-induced) insulin upon feeding []. With type II diabetes, this regulation system can fail, resulting in increased gluconeogenesis that in turn raises glucose levels []. PEPCK consists of an N-terminal and a catalytic C-terminal domain, with the active site and metal ions located in a cleft between them. Both domains have an alpha/beta topology that is partly similar to one another [, ]. Substrate binding causes PEPCK to undergo a conformational change, which accelerates catalysis by forcing bulk solvent molecules out of the active site []. PCK uses an alpha/beta/alpha motif for nucleotide binding, this motif differing from other kinase domains. GTP-utilising PEPCK has a PEP-binding domain and two kinase motifs to bind GTP and magnesium. This entry represents ATP-utilising phosphoenolpyruvate carboxykinase enzymes.; GO: 0004612 phosphoenolpyruvate carboxykinase (ATP) activity, 0005524 ATP binding, 0006094 gluconeogenesis; PDB: 2PY7_X 2OLR_A 1AYL_A 1K3D_A 1OEN_A 1AQ2_A 1OS1_A 2OLQ_A 1K3C_A 2PXZ_X ....
Probab=73.01 E-value=2.7 Score=36.57 Aligned_cols=16 Identities=31% Similarity=0.536 Sum_probs=14.2
Q ss_pred EEEEEcCCCCcHHHHh
Q 047923 172 ILGIWGVGSIGKTTIA 187 (190)
Q Consensus 172 vi~i~G~gGiGKTTla 187 (190)
+..+.|+.|.|||||.
T Consensus 212 ~alfFGLSGTGKTTLs 227 (466)
T PF01293_consen 212 TALFFGLSGTGKTTLS 227 (466)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred eEEEEecCCCCccccc
Confidence 4778999999999996
No 491
>PTZ00243 ABC transporter; Provisional
Probab=72.75 E-value=2.1 Score=42.80 Aligned_cols=20 Identities=20% Similarity=0.297 Sum_probs=17.5
Q ss_pred EEEEEEcCCCCcHHHHhccC
Q 047923 171 YILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~~v 190 (190)
.+++|.|..|.|||||.+.+
T Consensus 687 ~~~~IiG~nGsGKSTLL~~i 706 (1560)
T PTZ00243 687 KLTVVLGATGSGKSTLLQSL 706 (1560)
T ss_pred CEEEEECCCCCcHHHHHHHH
Confidence 47999999999999998753
No 492
>PLN02597 phosphoenolpyruvate carboxykinase [ATP]
Probab=72.69 E-value=1.8 Score=38.10 Aligned_cols=19 Identities=26% Similarity=0.406 Sum_probs=16.2
Q ss_pred eEEEEEEcCCCCcHHHHhc
Q 047923 170 VYILGIWGVGSIGKTTIAR 188 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~ 188 (190)
-.+..+.|..|.|||||+.
T Consensus 246 g~~~lffGlSGtGKTTLsa 264 (555)
T PLN02597 246 GDVALFFGLSGTGKTTLST 264 (555)
T ss_pred CcEEEEEecCCCCccceec
Confidence 3567889999999999984
No 493
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=72.64 E-value=2.3 Score=36.66 Aligned_cols=18 Identities=28% Similarity=0.147 Sum_probs=14.8
Q ss_pred EEEEcCCCCcHHHHhccC
Q 047923 173 LGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 173 i~i~G~gGiGKTTla~~v 190 (190)
+-+.|..|.|||.||.++
T Consensus 212 li~lGp~GTGKThla~~l 229 (449)
T TIGR02688 212 LIELGPKGTGKSYIYNNL 229 (449)
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 446799999999999763
No 494
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=72.40 E-value=3.4 Score=33.07 Aligned_cols=39 Identities=31% Similarity=0.222 Sum_probs=27.2
Q ss_pred ccchhHHHHHHHhhhcCCCeEEEEEEcCCCCcHHHHhcc
Q 047923 151 GRESRVEIIESLLAAESKDVYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 151 G~d~~~~~~~~~l~~~~~~~~vi~i~G~gGiGKTTla~~ 189 (190)
....+.+.+..+...-+++-+++.++|--|.|||+++|+
T Consensus 32 ~~a~h~e~l~~l~~~i~d~qg~~~vtGevGsGKTv~~Ra 70 (269)
T COG3267 32 WAADHNEALLMLHAAIADGQGILAVTGEVGSGKTVLRRA 70 (269)
T ss_pred hhhhhhHHHHHHHHHHhcCCceEEEEecCCCchhHHHHH
Confidence 344455555544444445677899999999999999884
No 495
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=72.15 E-value=6.8 Score=31.97 Aligned_cols=42 Identities=19% Similarity=0.236 Sum_probs=26.7
Q ss_pred cccccccchhHHHHHHHhhhcCCCeEEEEEEcCCCCcHHHHhc
Q 047923 146 ENQLVGRESRVEIIESLLAAESKDVYILGIWGVGSIGKTTIAR 188 (190)
Q Consensus 146 ~~~~vG~d~~~~~~~~~l~~~~~~~~vi~i~G~gGiGKTTla~ 188 (190)
...+++-..- +.+..++......-+...++|+.|+|||+-++
T Consensus 71 ~~~~l~tkt~-r~~~~~~~~A~k~g~l~~vyg~~g~gKt~a~~ 112 (297)
T COG2842 71 APDFLETKTV-RRIFFRTRPASKTGSLVVVYGYAGLGKTQAAK 112 (297)
T ss_pred cccccccchh-HhHhhhhhhhhhcCceEEEeccccchhHHHHH
Confidence 3466766543 23344444433333478899999999999876
No 496
>PRK12678 transcription termination factor Rho; Provisional
Probab=72.13 E-value=2.1 Score=38.39 Aligned_cols=18 Identities=33% Similarity=0.100 Sum_probs=15.5
Q ss_pred EEEEEcCCCCcHHHHhcc
Q 047923 172 ILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 172 vi~i~G~gGiGKTTla~~ 189 (190)
-.+|+|-+|.|||||++.
T Consensus 418 R~LIvgpp~aGKTtLL~~ 435 (672)
T PRK12678 418 RGLIVSPPKAGKTTILQN 435 (672)
T ss_pred EeEEeCCCCCCHHHHHHH
Confidence 467999999999999874
No 497
>CHL00206 ycf2 Ycf2; Provisional
Probab=72.13 E-value=2 Score=43.47 Aligned_cols=19 Identities=11% Similarity=0.097 Sum_probs=16.0
Q ss_pred EEEEEcCCCCcHHHHhccC
Q 047923 172 ILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 172 vi~i~G~gGiGKTTla~~v 190 (190)
=|=++|.+|.|||.|||++
T Consensus 1632 GILLiGPPGTGKTlLAKAL 1650 (2281)
T CHL00206 1632 GILVIGSIGTGRSYLVKYL 1650 (2281)
T ss_pred ceEEECCCCCCHHHHHHHH
Confidence 3447899999999999975
No 498
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=71.94 E-value=2.2 Score=39.61 Aligned_cols=20 Identities=30% Similarity=0.318 Sum_probs=18.0
Q ss_pred eEEEEEEcCCCCcHHHHhcc
Q 047923 170 VYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~ 189 (190)
..+|+|+|..+.|||||..+
T Consensus 290 ~pvV~ImGhvd~GKTSLl~~ 309 (787)
T PRK05306 290 PPVVTIMGHVDHGKTSLLDA 309 (787)
T ss_pred CCEEEEECCCCCCHHHHHHH
Confidence 57999999999999999864
No 499
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=71.64 E-value=2.5 Score=36.43 Aligned_cols=20 Identities=25% Similarity=0.413 Sum_probs=17.1
Q ss_pred eEEEEEEcCCCCcHHHHhcc
Q 047923 170 VYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~ 189 (190)
-..++|.|-.|.|||||.+.
T Consensus 156 Gqri~I~G~sG~GKTtLl~~ 175 (432)
T PRK06793 156 GQKIGIFAGSGVGKSTLLGM 175 (432)
T ss_pred CcEEEEECCCCCChHHHHHH
Confidence 45679999999999999864
No 500
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=71.59 E-value=1.9 Score=37.10 Aligned_cols=19 Identities=32% Similarity=0.503 Sum_probs=16.4
Q ss_pred EEEEEEcCCCCcHHHHhcc
Q 047923 171 YILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~~ 189 (190)
-++.|+|..|.||||+-+.
T Consensus 410 dvvaVvGqSGaGKttllRm 428 (593)
T COG2401 410 DVVAVVGQSGAGKTTLLRM 428 (593)
T ss_pred CeEEEEecCCCCcchHHHH
Confidence 4678999999999999764
Done!