Query 047923
Match_columns 190
No_of_seqs 179 out of 1795
Neff 8.9
Searched_HMMs 29240
Date Mon Mar 25 07:33:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047923.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047923hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3jrn_A AT1G72930 protein; TIR 100.0 1.3E-47 4.5E-52 285.9 8.5 139 2-142 34-175 (176)
2 3ozi_A L6TR; plant TIR domain, 100.0 1E-45 3.5E-50 280.1 9.6 136 2-139 61-202 (204)
3 3h16_A TIR protein; bacteria T 99.9 1.2E-26 4E-31 170.6 2.3 90 2-91 45-135 (154)
4 3ub2_A TOLL/interleukin-1 rece 99.8 2.6E-22 9E-27 146.0 -2.0 107 3-109 37-145 (146)
5 1fyx_A TOLL-like receptor 2; b 99.7 1.7E-18 5.7E-23 126.3 -0.6 75 3-77 33-110 (149)
6 2j67_A TOLL like receptor 10; 99.7 4.7E-18 1.6E-22 127.3 0.8 74 2-75 62-138 (178)
7 1t3g_A X-linked interleukin-1 99.7 2.5E-17 8.7E-22 121.2 3.3 73 2-74 39-114 (159)
8 2js7_A Myeloid differentiation 99.6 1.4E-17 4.7E-22 122.8 0.5 72 3-74 43-117 (160)
9 3j0a_A TOLL-like receptor 5; m 99.2 4.7E-12 1.6E-16 114.6 4.5 74 2-75 700-775 (844)
10 2a5y_B CED-4; apoptosis; HET: 99.0 5.4E-10 1.8E-14 96.8 6.6 41 150-190 131-172 (549)
11 3sfz_A APAF-1, apoptotic pepti 98.8 2.6E-09 9E-14 99.2 4.5 46 144-189 121-166 (1249)
12 1z6t_A APAF-1, apoptotic prote 98.8 4.1E-09 1.4E-13 91.6 4.4 46 144-189 121-166 (591)
13 1vt4_I APAF-1 related killer D 98.6 6E-09 2E-13 95.6 1.1 40 149-189 130-169 (1221)
14 1w5s_A Origin recognition comp 98.0 3E-06 1E-10 69.9 3.2 46 144-189 19-71 (412)
15 1jbk_A CLPB protein; beta barr 97.9 4.6E-06 1.6E-10 60.9 3.3 43 145-189 20-62 (195)
16 2qby_A CDC6 homolog 1, cell di 97.9 5E-06 1.7E-10 67.7 2.6 46 144-189 17-64 (386)
17 2qby_B CDC6 homolog 3, cell di 97.8 1.2E-05 4.1E-10 65.7 3.8 45 146-190 19-65 (384)
18 2v1u_A Cell division control p 97.7 1.1E-05 3.8E-10 65.7 2.6 47 144-190 16-64 (387)
19 1njg_A DNA polymerase III subu 97.7 2.5E-05 8.5E-10 58.9 4.3 45 144-189 20-64 (250)
20 2p65_A Hypothetical protein PF 97.6 1.9E-05 6.6E-10 57.4 2.4 43 145-189 20-62 (187)
21 1fnn_A CDC6P, cell division co 97.6 3.8E-05 1.3E-09 62.6 3.9 46 144-189 14-63 (389)
22 3d8b_A Fidgetin-like protein 1 97.5 4.4E-05 1.5E-09 62.4 3.1 65 122-190 63-137 (357)
23 3b9p_A CG5977-PA, isoform A; A 97.5 5.3E-05 1.8E-09 59.9 3.3 47 144-190 18-74 (297)
24 1iqp_A RFCS; clamp loader, ext 97.5 9.3E-05 3.2E-09 58.9 4.3 44 144-189 22-65 (327)
25 1sxj_B Activator 1 37 kDa subu 97.4 0.00013 4.5E-09 57.8 4.1 44 144-189 18-61 (323)
26 3h4m_A Proteasome-activating n 97.4 9.4E-05 3.2E-09 58.0 3.1 47 144-190 14-71 (285)
27 3pfi_A Holliday junction ATP-d 97.2 0.00014 5E-09 58.4 3.0 46 145-190 27-75 (338)
28 1sxj_D Activator 1 41 kDa subu 97.2 0.00023 7.8E-09 57.3 3.6 45 144-190 34-78 (353)
29 1in4_A RUVB, holliday junction 97.1 0.00023 7.9E-09 57.6 2.9 44 147-190 25-71 (334)
30 3syl_A Protein CBBX; photosynt 97.1 0.00026 8.8E-09 56.1 3.0 42 148-189 32-86 (309)
31 2yhs_A FTSY, cell division pro 97.1 0.0013 4.3E-08 56.2 7.3 20 170-189 293-312 (503)
32 1zu4_A FTSY; GTPase, signal re 97.0 0.0018 6E-08 52.3 7.3 20 170-189 105-124 (320)
33 3uk6_A RUVB-like 2; hexameric 97.0 0.00041 1.4E-08 56.3 3.3 45 146-190 43-90 (368)
34 1sxj_A Activator 1 95 kDa subu 96.9 0.00052 1.8E-08 58.8 3.7 47 144-190 36-97 (516)
35 3eie_A Vacuolar protein sortin 96.9 0.00051 1.8E-08 55.1 3.3 47 144-190 15-71 (322)
36 2w58_A DNAI, primosome compone 96.9 0.00032 1.1E-08 52.2 1.6 45 146-190 24-74 (202)
37 3e70_C DPA, signal recognition 96.8 0.0029 1E-07 51.1 7.1 20 170-189 129-148 (328)
38 3te6_A Regulatory protein SIR3 96.8 0.00033 1.1E-08 56.5 1.4 44 147-190 20-65 (318)
39 2qp9_X Vacuolar protein sortin 96.8 0.00071 2.4E-08 55.2 3.3 47 144-190 48-104 (355)
40 3pxg_A Negative regulator of g 96.8 0.00065 2.2E-08 57.5 3.2 42 147-190 180-221 (468)
41 2r44_A Uncharacterized protein 96.8 0.0015 5.1E-08 52.4 5.0 41 146-190 26-66 (331)
42 1j8m_F SRP54, signal recogniti 96.8 0.0032 1.1E-07 50.2 6.8 20 170-189 98-117 (297)
43 4fcw_A Chaperone protein CLPB; 96.8 0.0006 2E-08 54.0 2.5 44 147-190 17-67 (311)
44 3pvs_A Replication-associated 96.7 0.00079 2.7E-08 56.8 3.2 44 145-190 24-70 (447)
45 3bos_A Putative DNA replicatio 96.7 0.0007 2.4E-08 51.1 2.2 42 146-189 27-71 (242)
46 1iy2_A ATP-dependent metallopr 96.6 0.001 3.4E-08 52.2 3.1 46 145-190 38-93 (278)
47 1vma_A Cell division protein F 96.6 0.0039 1.3E-07 49.9 6.3 20 170-189 104-123 (306)
48 1d2n_A N-ethylmaleimide-sensit 96.6 0.0019 6.6E-08 50.3 4.5 44 147-190 33-84 (272)
49 3vfd_A Spastin; ATPase, microt 96.6 0.00098 3.4E-08 54.9 2.9 46 145-190 113-168 (389)
50 3b9q_A Chloroplast SRP recepto 96.6 0.0073 2.5E-07 48.2 7.7 20 170-189 100-119 (302)
51 3dm5_A SRP54, signal recogniti 96.5 0.0095 3.2E-07 50.1 8.5 20 170-189 100-119 (443)
52 1sxj_C Activator 1 40 kDa subu 96.5 0.0018 6.3E-08 52.1 4.0 43 146-190 24-66 (340)
53 3p32_A Probable GTPase RV1496/ 96.5 0.0021 7.2E-08 52.4 4.0 33 157-189 66-98 (355)
54 3kl4_A SRP54, signal recogniti 96.5 0.009 3.1E-07 50.1 7.8 20 170-189 97-116 (433)
55 2zan_A Vacuolar protein sortin 96.4 0.0012 4.3E-08 55.4 2.6 47 144-190 131-187 (444)
56 3fwy_A Light-independent proto 96.4 0.0015 5.3E-08 52.5 2.8 21 168-188 46-66 (314)
57 3hu3_A Transitional endoplasmi 96.4 0.0019 6.5E-08 55.1 3.3 45 146-190 203-258 (489)
58 2xxa_A Signal recognition part 96.4 0.0092 3.2E-07 50.0 7.4 21 169-189 99-119 (433)
59 1ypw_A Transitional endoplasmi 96.4 0.0015 5E-08 59.1 2.7 45 146-190 203-258 (806)
60 3pxi_A Negative regulator of g 96.3 0.0018 6.1E-08 57.9 3.2 42 147-190 180-221 (758)
61 2og2_A Putative signal recogni 96.3 0.013 4.6E-07 47.9 8.1 20 170-189 157-176 (359)
62 2c9o_A RUVB-like 1; hexameric 96.3 0.0021 7.3E-08 54.1 3.4 46 145-190 35-83 (456)
63 3u61_B DNA polymerase accessor 96.3 0.0025 8.5E-08 50.8 3.3 45 145-190 24-68 (324)
64 1qvr_A CLPB protein; coiled co 96.3 0.0015 5E-08 59.3 2.2 42 146-189 169-210 (854)
65 3tqc_A Pantothenate kinase; bi 96.2 0.0055 1.9E-07 49.4 5.2 21 169-189 91-111 (321)
66 3nbx_X ATPase RAVA; AAA+ ATPas 96.2 0.0039 1.3E-07 53.3 4.4 40 147-190 22-61 (500)
67 2kjq_A DNAA-related protein; s 96.2 0.0012 4E-08 47.2 0.9 21 170-190 36-56 (149)
68 1r6b_X CLPA protein; AAA+, N-t 96.1 0.0029 9.9E-08 56.5 3.2 42 146-189 185-226 (758)
69 3aez_A Pantothenate kinase; tr 96.0 0.0022 7.4E-08 51.5 1.9 22 169-190 89-110 (312)
70 2f6r_A COA synthase, bifunctio 96.0 0.0022 7.5E-08 50.6 1.8 21 169-189 74-94 (281)
71 2x8a_A Nuclear valosin-contain 95.9 0.0022 7.4E-08 50.5 1.5 18 173-190 47-64 (274)
72 4b4t_K 26S protease regulatory 95.9 0.0056 1.9E-07 51.3 3.8 44 147-190 172-226 (428)
73 1um8_A ATP-dependent CLP prote 95.9 0.0045 1.6E-07 50.5 3.2 20 171-190 73-92 (376)
74 2v3c_C SRP54, signal recogniti 95.9 0.0069 2.4E-07 50.8 4.3 20 170-189 99-118 (432)
75 1ixz_A ATP-dependent metallopr 95.9 0.0025 8.5E-08 49.1 1.4 18 173-190 52-69 (254)
76 4b4t_L 26S protease subunit RP 95.8 0.006 2E-07 51.3 3.8 44 147-190 181-235 (437)
77 2p67_A LAO/AO transport system 95.8 0.0076 2.6E-07 48.8 4.1 27 163-189 49-75 (341)
78 3nwj_A ATSK2; P loop, shikimat 95.8 0.0025 8.6E-08 49.6 1.1 19 171-189 49-67 (250)
79 1lv7_A FTSH; alpha/beta domain 95.8 0.0028 9.7E-08 48.8 1.4 18 173-190 48-65 (257)
80 2dhr_A FTSH; AAA+ protein, hex 95.8 0.0039 1.3E-07 53.3 2.3 46 145-190 29-84 (499)
81 1sq5_A Pantothenate kinase; P- 95.7 0.0035 1.2E-07 50.0 1.8 21 169-189 79-99 (308)
82 1htw_A HI0065; nucleotide-bind 95.7 0.0088 3E-07 43.1 3.7 22 168-189 31-52 (158)
83 2qm8_A GTPase/ATPase; G protei 95.7 0.011 3.7E-07 47.9 4.5 31 159-189 44-74 (337)
84 1g8p_A Magnesium-chelatase 38 95.6 0.0038 1.3E-07 50.1 1.7 45 144-190 21-65 (350)
85 3k1j_A LON protease, ATP-depen 95.6 0.0054 1.8E-07 53.5 2.7 40 147-190 41-80 (604)
86 4b4t_J 26S protease regulatory 95.6 0.0063 2.2E-07 50.6 3.0 44 147-190 148-202 (405)
87 4b4t_M 26S protease regulatory 95.6 0.008 2.8E-07 50.4 3.6 45 146-190 180-235 (434)
88 2z4s_A Chromosomal replication 95.6 0.0058 2E-07 51.3 2.8 21 170-190 130-150 (440)
89 2px0_A Flagellar biosynthesis 95.5 0.0042 1.4E-07 49.4 1.6 20 170-189 105-124 (296)
90 3cf0_A Transitional endoplasmi 95.5 0.004 1.4E-07 49.4 1.4 21 170-190 49-69 (301)
91 1svm_A Large T antigen; AAA+ f 95.5 0.0086 2.9E-07 49.3 3.4 24 166-189 165-188 (377)
92 4b4t_H 26S protease regulatory 95.4 0.0076 2.6E-07 50.9 3.0 44 147-190 209-263 (467)
93 1rj9_A FTSY, signal recognitio 95.4 0.005 1.7E-07 49.2 1.7 20 170-189 102-121 (304)
94 3end_A Light-independent proto 95.3 0.0088 3E-07 47.3 2.7 20 169-188 40-59 (307)
95 3m6a_A ATP-dependent protease 95.1 0.012 4E-07 50.8 3.3 44 147-190 81-128 (543)
96 3pxi_A Negative regulator of g 95.1 0.012 3.9E-07 52.7 3.2 44 147-190 491-541 (758)
97 3cf2_A TER ATPase, transitiona 95.1 0.014 4.9E-07 52.6 3.7 44 147-190 204-258 (806)
98 2olj_A Amino acid ABC transpor 95.0 0.0077 2.6E-07 47.1 1.7 20 170-189 50-69 (263)
99 1ls1_A Signal recognition part 95.0 0.0085 2.9E-07 47.6 1.9 20 170-189 98-117 (295)
100 1vpl_A ABC transporter, ATP-bi 94.9 0.0086 2.9E-07 46.6 1.7 19 171-189 42-60 (256)
101 1xwi_A SKD1 protein; VPS4B, AA 94.9 0.0076 2.6E-07 48.4 1.4 20 171-190 46-65 (322)
102 2j37_W Signal recognition part 94.9 0.015 5.2E-07 49.7 3.3 21 169-189 100-120 (504)
103 2zu0_C Probable ATP-dependent 94.9 0.0087 3E-07 46.8 1.7 19 171-189 47-65 (267)
104 2ghi_A Transport protein; mult 94.9 0.009 3.1E-07 46.6 1.7 19 171-189 47-65 (260)
105 2ixe_A Antigen peptide transpo 94.8 0.0095 3.3E-07 46.7 1.7 20 170-189 45-64 (271)
106 2r62_A Cell division protease 94.8 0.005 1.7E-07 47.6 0.1 18 173-190 47-64 (268)
107 4b4t_I 26S protease regulatory 94.8 0.019 6.5E-07 48.1 3.6 44 147-190 182-236 (437)
108 2ihy_A ABC transporter, ATP-bi 94.8 0.0096 3.3E-07 46.9 1.7 19 171-189 48-66 (279)
109 2qgz_A Helicase loader, putati 94.8 0.017 5.8E-07 46.1 3.0 21 170-190 152-172 (308)
110 2vhj_A Ntpase P4, P4; non- hyd 94.7 0.012 4.1E-07 47.5 1.9 19 171-189 124-142 (331)
111 1pzn_A RAD51, DNA repair and r 94.6 0.015 5E-07 47.3 2.3 31 159-189 120-150 (349)
112 1r6b_X CLPA protein; AAA+, N-t 94.6 0.015 5.1E-07 51.9 2.5 44 147-190 458-508 (758)
113 2v9p_A Replication protein E1; 94.6 0.012 4E-07 47.1 1.6 23 168-190 124-146 (305)
114 1ofh_A ATP-dependent HSL prote 94.6 0.011 3.7E-07 46.4 1.4 19 172-190 52-70 (310)
115 1puj_A YLQF, conserved hypothe 94.6 0.43 1.5E-05 37.4 10.7 29 19-47 13-41 (282)
116 3zvl_A Bifunctional polynucleo 94.5 0.01 3.6E-07 49.3 1.3 21 169-189 257-277 (416)
117 1tue_A Replication protein E1; 94.5 0.015 5.2E-07 44.0 2.0 33 156-189 45-77 (212)
118 2r6a_A DNAB helicase, replicat 94.4 0.035 1.2E-06 46.6 4.4 39 150-189 184-222 (454)
119 1tq4_A IIGP1, interferon-induc 94.3 0.015 5.2E-07 48.4 1.8 32 158-189 57-88 (413)
120 1lw7_A Transcriptional regulat 94.2 0.016 5.4E-07 47.3 1.6 20 170-189 170-189 (365)
121 3cr8_A Sulfate adenylyltranfer 94.2 0.012 4E-07 50.9 0.9 21 170-190 369-389 (552)
122 4a1f_A DNAB helicase, replicat 94.2 0.04 1.4E-06 44.7 4.0 41 148-189 25-65 (338)
123 2ged_A SR-beta, signal recogni 94.1 0.016 5.4E-07 42.1 1.4 21 169-189 47-67 (193)
124 2bbs_A Cystic fibrosis transme 94.1 0.016 5.6E-07 45.9 1.6 19 171-189 65-83 (290)
125 1u0j_A DNA replication protein 94.1 0.031 1.1E-06 43.8 3.1 33 158-190 92-124 (267)
126 2ce7_A Cell division protein F 94.0 0.016 5.6E-07 49.1 1.4 18 173-190 52-69 (476)
127 3hws_A ATP-dependent CLP prote 94.0 0.017 5.7E-07 46.9 1.4 20 171-190 52-71 (363)
128 3nh6_A ATP-binding cassette SU 94.0 0.013 4.4E-07 46.9 0.7 20 170-189 80-99 (306)
129 3tui_C Methionine import ATP-b 93.9 0.019 6.6E-07 47.1 1.7 20 170-189 54-73 (366)
130 3bh0_A DNAB-like replicative h 93.9 0.035 1.2E-06 44.3 3.1 38 151-189 50-87 (315)
131 2www_A Methylmalonic aciduria 93.9 0.024 8.3E-07 46.0 2.2 21 169-189 73-93 (349)
132 3fkq_A NTRC-like two-domain pr 93.8 0.037 1.3E-06 45.2 3.2 21 168-188 141-162 (373)
133 1qvr_A CLPB protein; coiled co 93.8 0.027 9.1E-07 51.1 2.5 44 147-190 558-608 (854)
134 3a8t_A Adenylate isopentenyltr 93.7 0.024 8.4E-07 45.9 1.9 20 170-189 40-59 (339)
135 2ffh_A Protein (FFH); SRP54, s 93.7 0.024 8.4E-07 47.4 1.9 20 170-189 98-117 (425)
136 1g8f_A Sulfate adenylyltransfe 93.6 0.058 2E-06 46.2 4.1 21 170-190 395-415 (511)
137 3f9v_A Minichromosome maintena 93.4 0.042 1.5E-06 47.9 2.9 45 146-190 294-347 (595)
138 3ez2_A Plasmid partition prote 93.3 0.077 2.6E-06 43.5 4.3 21 168-188 106-127 (398)
139 1z47_A CYSA, putative ABC-tran 93.3 0.029 1E-06 45.8 1.7 19 171-189 42-60 (355)
140 2q6t_A DNAB replication FORK h 93.3 0.07 2.4E-06 44.6 4.1 38 151-189 182-219 (444)
141 2yv5_A YJEQ protein; hydrolase 93.2 0.03 1E-06 44.5 1.7 19 171-189 166-184 (302)
142 1x6v_B Bifunctional 3'-phospho 93.2 0.032 1.1E-06 48.9 1.9 21 170-190 52-72 (630)
143 1ypw_A Transitional endoplasmi 93.1 0.016 5.5E-07 52.3 -0.1 44 147-190 477-531 (806)
144 2pt7_A CAG-ALFA; ATPase, prote 93.1 0.029 9.9E-07 45.2 1.4 20 171-190 172-191 (330)
145 2rcn_A Probable GTPase ENGC; Y 93.1 0.032 1.1E-06 45.6 1.7 18 172-189 217-234 (358)
146 2obl_A ESCN; ATPase, hydrolase 93.0 0.032 1.1E-06 45.4 1.6 20 170-189 71-90 (347)
147 1yqt_A RNAse L inhibitor; ATP- 93.0 0.032 1.1E-06 48.0 1.7 20 171-190 313-332 (538)
148 3ozx_A RNAse L inhibitor; ATP 93.0 0.033 1.1E-06 48.0 1.7 19 171-189 295-313 (538)
149 3hr8_A Protein RECA; alpha and 93.0 0.036 1.2E-06 45.2 1.8 34 156-189 46-80 (356)
150 1m8p_A Sulfate adenylyltransfe 93.0 0.037 1.3E-06 48.1 1.9 21 170-190 396-416 (573)
151 1g41_A Heat shock protein HSLU 92.9 0.031 1.1E-06 47.0 1.4 19 172-190 52-70 (444)
152 3lda_A DNA repair protein RAD5 92.9 0.031 1.1E-06 46.4 1.3 33 156-188 164-196 (400)
153 2ewv_A Twitching motility prot 92.9 0.039 1.3E-06 45.2 1.9 20 170-189 136-155 (372)
154 2gza_A Type IV secretion syste 92.8 0.028 9.7E-07 45.8 1.0 19 171-189 176-194 (361)
155 2zr9_A Protein RECA, recombina 92.7 0.038 1.3E-06 44.9 1.6 34 156-189 46-80 (349)
156 1yqt_A RNAse L inhibitor; ATP- 92.7 0.039 1.3E-06 47.5 1.7 20 170-189 47-66 (538)
157 3bk7_A ABC transporter ATP-bin 92.5 0.041 1.4E-06 48.1 1.7 19 171-189 383-401 (607)
158 1v5w_A DMC1, meiotic recombina 92.5 0.075 2.6E-06 42.9 3.0 32 158-189 110-141 (343)
159 3j16_B RLI1P; ribosome recycli 92.4 0.043 1.5E-06 48.0 1.7 19 171-189 379-397 (608)
160 3gd7_A Fusion complex of cysti 92.4 0.044 1.5E-06 45.3 1.6 21 170-190 47-67 (390)
161 1mky_A Probable GTP-binding pr 92.3 0.1 3.6E-06 43.4 3.9 21 169-189 179-199 (439)
162 3gee_A MNME, tRNA modification 92.3 0.83 2.8E-05 38.6 9.4 21 169-190 233-253 (476)
163 3jvv_A Twitching mobility prot 92.3 0.047 1.6E-06 44.5 1.7 19 171-189 124-142 (356)
164 2gks_A Bifunctional SAT/APS ki 92.3 0.051 1.7E-06 46.9 1.9 20 170-189 372-391 (546)
165 2npi_A Protein CLP1; CLP1-PCF1 92.3 0.037 1.3E-06 46.8 1.0 20 170-189 138-157 (460)
166 2qag_B Septin-6, protein NEDD5 92.3 0.041 1.4E-06 46.0 1.3 21 169-189 41-61 (427)
167 1u0l_A Probable GTPase ENGC; p 92.3 0.049 1.7E-06 43.2 1.7 18 172-189 171-188 (301)
168 3bk7_A ABC transporter ATP-bin 92.2 0.047 1.6E-06 47.7 1.7 19 171-189 118-136 (607)
169 4a82_A Cystic fibrosis transme 92.1 0.071 2.4E-06 46.2 2.7 20 171-190 368-387 (578)
170 3j16_B RLI1P; ribosome recycli 92.0 0.052 1.8E-06 47.5 1.7 19 171-189 104-122 (608)
171 1t9h_A YLOQ, probable GTPase E 92.0 0.021 7.3E-07 45.6 -0.8 18 172-189 175-192 (307)
172 3bgw_A DNAB-like replicative h 91.7 0.15 5.1E-06 42.7 4.1 39 150-189 178-216 (444)
173 2dpy_A FLII, flagellum-specifi 91.5 0.062 2.1E-06 45.0 1.6 20 170-189 157-176 (438)
174 1p9r_A General secretion pathw 91.5 0.15 5.2E-06 42.4 3.9 21 169-189 166-186 (418)
175 2qtf_A Protein HFLX, GTP-bindi 91.5 0.056 1.9E-06 44.2 1.2 21 169-189 178-198 (364)
176 3qf4_A ABC transporter, ATP-bi 91.5 0.088 3E-06 45.7 2.5 20 171-190 370-389 (587)
177 3b5x_A Lipid A export ATP-bind 91.3 0.072 2.5E-06 46.2 1.8 19 171-189 370-388 (582)
178 2z43_A DNA repair and recombin 91.3 0.062 2.1E-06 43.0 1.3 32 158-189 95-126 (324)
179 3b60_A Lipid A export ATP-bind 91.2 0.068 2.3E-06 46.3 1.6 19 171-189 370-388 (582)
180 1u94_A RECA protein, recombina 91.2 0.075 2.6E-06 43.3 1.7 35 155-189 47-82 (356)
181 2i1q_A DNA repair and recombin 91.2 0.085 2.9E-06 42.0 2.0 32 158-189 86-117 (322)
182 3upu_A ATP-dependent DNA helic 91.1 0.092 3.1E-06 44.0 2.2 18 172-189 47-64 (459)
183 2e87_A Hypothetical protein PH 91.1 0.077 2.6E-06 43.0 1.7 21 169-189 166-186 (357)
184 1tf7_A KAIC; homohexamer, hexa 91.1 0.072 2.5E-06 45.5 1.6 20 170-189 281-300 (525)
185 2hjg_A GTP-binding protein ENG 90.8 0.18 6E-06 42.0 3.6 21 169-189 174-194 (436)
186 3o47_A ADP-ribosylation factor 90.7 0.1 3.5E-06 41.8 2.1 18 172-189 167-184 (329)
187 2j69_A Bacterial dynamin-like 90.6 0.52 1.8E-05 41.7 6.6 38 152-189 51-88 (695)
188 2oap_1 GSPE-2, type II secreti 90.5 0.082 2.8E-06 45.2 1.4 18 172-189 262-279 (511)
189 2yl4_A ATP-binding cassette SU 90.5 0.071 2.4E-06 46.3 1.0 19 171-189 371-389 (595)
190 3bfv_A CAPA1, CAPB2, membrane 90.4 0.27 9.2E-06 38.3 4.2 20 169-188 81-101 (271)
191 1udx_A The GTP-binding protein 90.3 0.063 2.2E-06 44.7 0.5 20 170-189 157-176 (416)
192 3qf4_B Uncharacterized ABC tra 90.3 0.08 2.7E-06 46.1 1.1 19 171-189 382-400 (598)
193 3cio_A ETK, tyrosine-protein k 90.2 0.27 9.3E-06 38.8 4.1 20 169-188 103-123 (299)
194 3ez9_A Para; DNA binding, wing 90.2 0.088 3E-06 43.3 1.3 21 168-188 109-130 (403)
195 2wkq_A NPH1-1, RAS-related C3 90.0 0.18 6.1E-06 39.7 2.9 19 170-188 155-173 (332)
196 3ux8_A Excinuclease ABC, A sub 89.5 0.17 5.9E-06 44.5 2.7 19 171-189 349-367 (670)
197 2iw3_A Elongation factor 3A; a 89.4 0.13 4.3E-06 47.5 1.7 19 171-189 462-480 (986)
198 3cnl_A YLQF, putative uncharac 89.3 0.12 4.1E-06 40.2 1.4 29 19-47 11-39 (262)
199 1lnz_A SPO0B-associated GTP-bi 89.2 0.17 5.7E-06 41.0 2.1 21 170-190 158-178 (342)
200 3dpu_A RAB family protein; roc 88.7 0.14 4.8E-06 43.8 1.4 19 171-189 42-60 (535)
201 2vf7_A UVRA2, excinuclease ABC 88.6 0.21 7E-06 45.4 2.5 19 171-189 524-542 (842)
202 3hyn_A Putative signal transdu 88.6 0.71 2.4E-05 33.9 4.9 50 17-69 67-116 (189)
203 3ice_A Transcription terminati 88.3 0.15 5.3E-06 42.2 1.4 20 170-189 174-193 (422)
204 2ygr_A Uvrabc system protein A 88.2 0.24 8.2E-06 45.6 2.7 20 171-190 669-688 (993)
205 3la6_A Tyrosine-protein kinase 88.1 0.42 1.4E-05 37.5 3.8 20 169-188 91-111 (286)
206 3e1s_A Exodeoxyribonuclease V, 88.1 0.17 6E-06 43.8 1.7 19 171-189 205-223 (574)
207 1sky_E F1-ATPase, F1-ATP synth 87.9 0.18 6.2E-06 42.7 1.6 18 172-189 153-170 (473)
208 2iw3_A Elongation factor 3A; a 87.7 0.12 4E-06 47.7 0.3 19 171-189 700-718 (986)
209 3szr_A Interferon-induced GTP- 87.4 0.2 7E-06 43.6 1.7 21 169-189 44-64 (608)
210 3g5u_A MCG1178, multidrug resi 86.9 0.22 7.4E-06 47.3 1.7 19 171-189 1060-1078(1284)
211 2r6f_A Excinuclease ABC subuni 86.9 0.23 7.7E-06 45.7 1.7 20 171-190 651-670 (972)
212 1xp8_A RECA protein, recombina 86.9 0.31 1.1E-05 39.8 2.4 35 155-189 58-93 (366)
213 4aby_A DNA repair protein RECN 86.4 0.099 3.4E-06 42.9 -0.8 18 172-189 62-79 (415)
214 1ny5_A Transcriptional regulat 86.3 0.4 1.4E-05 39.3 2.8 43 147-190 137-180 (387)
215 1of1_A Thymidine kinase; trans 86.1 0.27 9.3E-06 40.3 1.7 21 169-189 48-68 (376)
216 3cf2_A TER ATPase, transitiona 85.9 0.21 7.2E-06 45.1 1.0 44 147-190 477-531 (806)
217 3ux8_A Excinuclease ABC, A sub 85.8 0.36 1.2E-05 42.5 2.4 17 171-187 45-61 (670)
218 3g5u_A MCG1178, multidrug resi 85.6 0.34 1.2E-05 45.9 2.3 20 171-190 417-436 (1284)
219 4dcu_A GTP-binding protein ENG 85.6 0.5 1.7E-05 39.5 3.1 21 169-189 194-214 (456)
220 1w36_D RECD, exodeoxyribonucle 84.5 0.28 9.6E-06 42.7 1.1 19 171-189 165-183 (608)
221 3dzd_A Transcriptional regulat 84.4 0.7 2.4E-05 37.6 3.4 43 147-190 129-172 (368)
222 1ewq_A DNA mismatch repair pro 84.1 0.32 1.1E-05 43.7 1.3 19 171-189 577-595 (765)
223 3q5d_A Atlastin-1; G protein, 83.6 0.75 2.5E-05 38.6 3.3 35 155-189 49-86 (447)
224 1q57_A DNA primase/helicase; d 83.5 0.38 1.3E-05 40.7 1.5 20 170-189 242-261 (503)
225 2qpt_A EH domain-containing pr 83.4 0.37 1.3E-05 41.5 1.4 21 169-189 64-84 (550)
226 3ec1_A YQEH GTPase; atnos1, at 83.3 0.72 2.5E-05 37.5 3.0 35 150-189 147-181 (369)
227 4f4c_A Multidrug resistance pr 83.2 0.29 1E-05 46.5 0.7 19 171-189 1106-1124(1321)
228 1wb9_A DNA mismatch repair pro 83.2 0.37 1.3E-05 43.5 1.3 20 170-189 607-626 (800)
229 4b3f_X DNA-binding protein smu 83.1 1 3.5E-05 39.4 4.1 30 154-187 193-222 (646)
230 3geh_A MNME, tRNA modification 82.9 0.39 1.4E-05 40.4 1.3 19 170-189 225-243 (462)
231 1eiw_A Hypothetical protein MT 82.9 0.69 2.3E-05 31.1 2.3 32 25-56 34-65 (111)
232 3lvq_E ARF-GAP with SH3 domain 82.3 0.45 1.5E-05 40.1 1.4 19 171-189 323-341 (497)
233 1ko7_A HPR kinase/phosphatase; 81.9 0.78 2.7E-05 36.7 2.7 19 171-189 145-163 (314)
234 4f4c_A Multidrug resistance pr 81.5 0.49 1.7E-05 45.0 1.5 19 171-189 445-463 (1321)
235 4a9a_A Ribosome-interacting GT 81.2 0.48 1.6E-05 38.9 1.2 21 169-189 71-91 (376)
236 3h2y_A GTPase family protein; 81.0 0.6 2E-05 38.0 1.7 35 150-189 145-179 (368)
237 3l0o_A Transcription terminati 80.9 0.54 1.8E-05 39.0 1.4 19 171-189 176-194 (427)
238 3thx_A DNA mismatch repair pro 79.5 0.6 2E-05 42.9 1.3 20 170-189 662-681 (934)
239 1knx_A Probable HPR(Ser) kinas 79.1 0.9 3.1E-05 36.3 2.1 18 172-189 149-166 (312)
240 3cmu_A Protein RECA, recombina 79.1 0.61 2.1E-05 46.1 1.3 32 158-189 1414-1446(2050)
241 3vkw_A Replicase large subunit 78.8 1 3.4E-05 37.8 2.4 21 168-188 159-179 (446)
242 1ihu_A Arsenical pump-driving 78.0 1.8 6.1E-05 37.3 3.9 19 170-188 327-345 (589)
243 2o8b_B DNA mismatch repair pro 77.6 0.73 2.5E-05 42.7 1.3 21 170-190 789-809 (1022)
244 4ido_A Atlastin-1; GTPase, GTP 77.2 2.2 7.4E-05 35.9 4.0 37 152-188 46-85 (457)
245 2gk6_A Regulator of nonsense t 77.0 0.9 3.1E-05 39.6 1.7 17 172-188 197-213 (624)
246 3mca_A HBS1, elongation factor 76.8 1.3 4.3E-05 38.5 2.5 21 169-189 176-196 (592)
247 3pih_A Uvrabc system protein A 76.7 1.2 4.2E-05 40.7 2.5 17 171-187 611-627 (916)
248 3thx_B DNA mismatch repair pro 76.7 0.59 2E-05 42.8 0.4 20 170-189 673-692 (918)
249 3izq_1 HBS1P, elongation facto 75.4 0.95 3.2E-05 39.5 1.4 19 171-189 168-186 (611)
250 2ck3_D ATP synthase subunit be 74.8 1 3.4E-05 38.2 1.3 17 172-188 155-171 (482)
251 3llm_A ATP-dependent RNA helic 73.9 1.8 6.2E-05 32.4 2.5 18 171-188 77-94 (235)
252 3f8t_A Predicted ATPase involv 73.5 1.8 6.3E-05 36.7 2.6 44 145-190 212-258 (506)
253 1fx0_B ATP synthase beta chain 72.5 1.2 4.2E-05 37.8 1.3 17 172-188 167-183 (498)
254 3cmw_A Protein RECA, recombina 72.2 1.4 4.7E-05 43.1 1.7 39 151-189 712-751 (1706)
255 3cmw_A Protein RECA, recombina 72.1 1.1 3.9E-05 43.6 1.1 21 170-190 1082-1102(1706)
256 2wjy_A Regulator of nonsense t 71.8 1.4 4.9E-05 39.6 1.7 17 172-188 373-389 (800)
257 1ii2_A Phosphoenolpyruvate car 70.6 2.2 7.6E-05 36.5 2.5 18 171-188 214-231 (524)
258 1ytm_A Phosphoenolpyruvate car 70.4 2.3 7.7E-05 36.5 2.5 18 171-188 236-253 (532)
259 1r5b_A Eukaryotic peptide chai 70.2 1.1 3.6E-05 37.7 0.4 21 169-189 42-62 (467)
260 2olr_A Phosphoenolpyruvate car 69.8 2.4 8.2E-05 36.4 2.5 18 171-188 242-259 (540)
261 1xzp_A Probable tRNA modificat 69.8 0.5 1.7E-05 40.0 -1.7 19 171-189 244-262 (482)
262 1j3b_A ATP-dependent phosphoen 68.7 2.4 8.3E-05 36.3 2.3 18 171-188 226-243 (529)
263 3cmu_A Protein RECA, recombina 68.6 1.3 4.5E-05 43.9 0.7 41 149-189 361-402 (2050)
264 2r9v_A ATP synthase subunit al 67.5 2.2 7.5E-05 36.4 1.8 16 172-187 177-192 (515)
265 3vr4_A V-type sodium ATPase ca 66.4 2.1 7.1E-05 37.2 1.4 19 171-189 233-251 (600)
266 4akg_A Glutathione S-transfera 66.3 8.5 0.00029 39.4 5.9 18 172-189 1611-1628(2695)
267 2c61_A A-type ATP synthase non 66.2 1.3 4.5E-05 37.4 0.2 17 172-188 154-170 (469)
268 2qe7_A ATP synthase subunit al 66.2 2.2 7.4E-05 36.3 1.5 16 172-187 164-179 (502)
269 2ck3_A ATP synthase subunit al 65.7 2.3 7.9E-05 36.2 1.6 16 172-187 164-179 (510)
270 3vr4_D V-type sodium ATPase su 65.4 1.4 4.7E-05 37.1 0.2 17 173-189 154-170 (465)
271 2xzl_A ATP-dependent helicase 65.3 2.4 8.1E-05 38.2 1.7 30 154-188 364-393 (802)
272 3gqb_B V-type ATP synthase bet 64.9 1.2 4.3E-05 37.4 -0.2 17 173-189 150-166 (464)
273 3gqb_A V-type ATP synthase alp 64.6 2 6.8E-05 37.1 1.0 19 171-189 222-240 (578)
274 2fz4_A DNA repair protein RAD2 64.2 5.2 0.00018 30.0 3.2 32 152-188 95-126 (237)
275 1fx0_A ATP synthase alpha chai 63.5 2.2 7.5E-05 36.3 1.0 16 172-187 165-180 (507)
276 3mfy_A V-type ATP synthase alp 62.8 1.6 5.4E-05 37.8 0.0 19 171-189 228-246 (588)
277 2ius_A DNA translocase FTSK; n 62.2 2.7 9.4E-05 35.8 1.4 19 171-189 168-186 (512)
278 1azs_C GS-alpha; complex (lyas 60.8 2.5 8.4E-05 34.9 0.9 19 170-189 41-59 (402)
279 1e9r_A Conjugal transfer prote 60.7 2.9 0.0001 34.3 1.3 18 171-188 54-71 (437)
280 4ad8_A DNA repair protein RECN 60.2 1.3 4.6E-05 37.5 -0.8 19 172-190 62-80 (517)
281 3avx_A Elongation factor TS, e 59.5 8.4 0.00029 36.5 4.2 20 170-189 296-315 (1289)
282 3zvr_A Dynamin-1; hydrolase, D 59.5 5.1 0.00017 36.0 2.7 42 148-189 22-70 (772)
283 4akg_A Glutathione S-transfera 58.5 2.8 9.7E-05 42.7 1.0 16 173-188 1270-1285(2695)
284 3oaa_A ATP synthase subunit al 58.3 3.7 0.00013 35.0 1.5 16 172-187 164-179 (513)
285 2r6f_A Excinuclease ABC subuni 53.8 6.4 0.00022 36.3 2.4 17 171-187 45-61 (972)
286 2ygr_A Uvrabc system protein A 53.5 6.5 0.00022 36.3 2.4 17 171-187 47-63 (993)
287 3vkg_A Dynein heavy chain, cyt 53.0 10 0.00035 39.5 3.9 15 175-189 1651-1665(3245)
288 2pp6_A Gifsy-2 prophage ATP-bi 49.6 5.7 0.00019 26.0 1.0 23 21-43 42-64 (102)
289 3czq_A Putative polyphosphate 47.4 17 0.00057 28.8 3.6 20 170-189 86-105 (304)
290 2xau_A PRE-mRNA-splicing facto 45.2 8.1 0.00028 34.6 1.7 29 155-187 98-126 (773)
291 2d00_A V-type ATP synthase sub 43.8 55 0.0019 21.4 5.3 59 3-68 21-79 (109)
292 2iut_A DNA translocase FTSK; n 41.9 9.2 0.00031 33.1 1.4 19 171-189 215-233 (574)
293 1w78_A FOLC bifunctional prote 40.4 22 0.00074 29.1 3.4 33 155-189 34-66 (422)
294 3b6e_A Interferon-induced heli 38.1 8.7 0.0003 27.5 0.6 32 152-188 35-66 (216)
295 1byr_A Protein (endonuclease); 37.4 92 0.0031 20.8 6.8 34 5-42 5-38 (155)
296 1q2j_A MU-conotoxin SMIIIA; HE 37.2 5 0.00017 19.1 -0.5 11 39-49 7-17 (26)
297 3aon_B V-type sodium ATPase su 36.8 28 0.00095 23.2 2.9 57 3-68 20-76 (115)
298 1egw_A MADS box transcription 35.2 9.8 0.00034 23.6 0.4 29 28-56 38-66 (77)
299 3nrs_A Dihydrofolate:folylpoly 32.8 32 0.0011 28.3 3.3 32 155-188 37-68 (437)
300 2yan_A Glutaredoxin-3; oxidore 32.0 24 0.00082 22.4 2.0 30 18-49 5-34 (105)
301 1t6n_A Probable ATP-dependent 31.0 53 0.0018 23.5 4.0 15 173-187 54-68 (220)
302 3kb6_A D-lactate dehydrogenase 30.4 12 0.0004 29.9 0.3 15 171-185 142-156 (334)
303 1qde_A EIF4A, translation init 29.5 58 0.002 23.3 4.0 14 173-186 54-67 (224)
304 4h3d_A 3-dehydroquinate dehydr 28.5 45 0.0015 25.5 3.2 60 8-68 116-175 (258)
305 2wem_A Glutaredoxin-related pr 28.4 36 0.0012 22.5 2.4 37 18-56 8-46 (118)
306 3dt5_A Uncharacterized protein 27.5 42 0.0014 21.6 2.5 61 40-111 36-100 (135)
307 1o5z_A Folylpolyglutamate synt 27.2 36 0.0012 28.0 2.7 32 156-189 38-69 (442)
308 2av4_A Thioredoxin-like protei 27.1 1.2E+02 0.004 21.5 5.0 17 68-84 75-91 (160)
309 3czp_A Putative polyphosphate 27.1 52 0.0018 27.9 3.6 34 156-189 29-62 (500)
310 2fwr_A DNA repair protein RAD2 27.0 46 0.0016 27.2 3.3 32 152-188 95-126 (472)
311 1hv8_A Putative ATP-dependent 27.0 54 0.0018 25.2 3.6 15 173-187 47-61 (367)
312 3rc3_A ATP-dependent RNA helic 25.8 38 0.0013 29.8 2.7 18 170-187 155-172 (677)
313 3vkg_A Dynein heavy chain, cyt 25.3 22 0.00076 37.1 1.2 16 174-189 608-623 (3245)
314 3p57_A Myocyte-specific enhanc 24.8 19 0.00065 23.0 0.4 29 28-56 38-66 (90)
315 1s2m_A Putative ATP-dependent 24.7 74 0.0025 25.0 4.1 15 173-187 61-75 (400)
316 1rif_A DAR protein, DNA helica 24.7 26 0.0009 26.5 1.3 32 152-188 115-146 (282)
317 1dxy_A D-2-hydroxyisocaproate 24.4 18 0.0006 28.8 0.3 15 171-185 146-160 (333)
318 2vos_A Folylpolyglutamate synt 24.3 35 0.0012 28.6 2.1 33 155-189 49-81 (487)
319 3gg9_A D-3-phosphoglycerate de 23.6 17 0.00059 29.2 0.1 15 171-185 161-175 (352)
320 2g76_A 3-PGDH, D-3-phosphoglyc 23.4 19 0.00064 28.8 0.2 15 171-185 166-180 (335)
321 2oca_A DAR protein, ATP-depend 23.1 64 0.0022 26.6 3.5 32 152-188 115-146 (510)
322 1wik_A Thioredoxin-like protei 23.1 38 0.0013 21.6 1.7 37 18-56 3-41 (109)
323 2ekl_A D-3-phosphoglycerate de 22.8 18 0.00063 28.4 0.1 15 171-185 143-157 (313)
324 2pjx_C Syntaxin-4; membrane tr 22.6 29 0.00098 16.5 0.7 23 12-38 7-29 (29)
325 2pl3_A Probable ATP-dependent 21.7 48 0.0016 24.1 2.2 15 173-187 65-79 (236)
326 3ro3_B Minsc, peptide of prote 21.5 62 0.0021 14.6 1.7 12 100-111 8-19 (22)
327 3h1t_A Type I site-specific re 21.4 56 0.0019 27.6 2.9 38 149-187 177-215 (590)
328 1wwk_A Phosphoglycerate dehydr 21.4 20 0.0007 28.1 0.1 15 171-185 143-157 (307)
329 3d4o_A Dipicolinate synthase s 20.9 22 0.00077 27.4 0.2 17 171-187 156-172 (293)
330 1gdh_A D-glycerate dehydrogena 20.8 21 0.00073 28.1 0.1 16 171-186 147-162 (320)
331 2va8_A SSO2462, SKI2-type heli 20.5 47 0.0016 28.9 2.2 16 173-188 49-64 (715)
332 1j4a_A D-LDH, D-lactate dehydr 20.3 25 0.00086 27.9 0.4 15 171-185 147-161 (333)
333 1qp8_A Formate dehydrogenase; 20.3 29 0.001 27.1 0.8 15 171-185 125-139 (303)
334 3gvx_A Glycerate dehydrogenase 20.3 21 0.00071 27.9 -0.1 15 171-185 123-137 (290)
335 1vec_A ATP-dependent RNA helic 20.3 49 0.0017 23.3 2.0 15 173-187 43-57 (206)
336 4g2n_A D-isomer specific 2-hyd 20.1 24 0.00082 28.3 0.2 16 171-186 174-189 (345)
No 1
>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}
Probab=100.00 E-value=1.3e-47 Score=285.91 Aligned_cols=139 Identities=35% Similarity=0.589 Sum_probs=115.9
Q ss_pred CCCeeEEEeC-CCCCcccchHHHHHHhhcccceEEEecCCCcCchhhHHHHHHHHHhhhcCCeeEEeEEeecCCcccccc
Q 047923 2 RQNIQTFIDD-QLNRGDEISESIAYAIESPAISVIIFSEGYPFSRWCLHELVKILKYKKEYAHIVIPGFYRGDPSEVRSQ 80 (190)
Q Consensus 2 ~~gi~~f~d~-~~~~g~~~~~~l~~ai~~s~~~ivv~S~~y~~S~wcl~El~~i~~~~~~~~~~v~PvFy~v~ps~Vr~q 80 (190)
++||++|+|+ ++.+|++|.++|.+||++|+++|+|||+||++|+|||+||++|++|++.+++.|+||||+|+|++||+|
T Consensus 34 ~~gi~~f~D~~~l~~G~~i~~~l~~aIe~Sri~IvV~S~ny~~S~WCl~EL~~i~~~~~~~~~~ViPIfy~V~ps~Vr~q 113 (176)
T 3jrn_A 34 RRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASSWCLDELVTIMDFEKKGSITVMPIFYGVEPNHVRWQ 113 (176)
T ss_dssp HTTCCEECCCC--------------CCTTEEEEEEEECTTTTTCHHHHHHHHHHHHHHHTTSCEEEEEECSSCHHHHHHT
T ss_pred HCCCEEEEEcccccCCCchHHHHHHHHHhCCEEEEEecCCcCCChhHHHHHHHHHhhhccCCCEEEEEEecCCHHHhhhc
Confidence 5799999998 999999999999999999999999999999999999999999999999899999999999999999999
Q ss_pred CCchhhHHHHHHHhhhhhhHHHHhHHHHHHHhhccccccCc--hhhhHHHHHHHHHhhhhhhhh
Q 047923 81 TGSFGNSFSKLEERFNENSEKLQSWRNATKEAASFMAFILP--ESELIKEVVNQILKRLAEVLL 142 (190)
Q Consensus 81 ~g~~~~~f~~~~~~~~~~~e~v~kWr~AL~ev~~~~g~~~~--e~~~i~~iv~~v~~~l~~~~~ 142 (190)
+|.||++|.+|+.+ .+.+++++||.||+++++++|+++. |+++|++||++|+++|+.++|
T Consensus 114 ~g~fg~af~~~~~~--~~~~~~~~Wr~AL~~va~~~G~~~~~~e~~~i~~Iv~~v~~~l~~~~~ 175 (176)
T 3jrn_A 114 TGVLAEQFKKHASR--EDPEKVLKWRQALTNFAQLSGDCSGDDDSKLVDKIANEISNKKTIYAT 175 (176)
T ss_dssp CTHHHHHHHHHHTT--SCHHHHHHHHHHHHHHTTSCCEECCSCHHHHHHHHHHHHHTTCC----
T ss_pred cCcHHHHHHHHHhc--cCHHHHHHHHHHHHHHhcccceecCCCHHHHHHHHHHHHHHHhcCCCC
Confidence 99999999999887 4557899999999999999999986 999999999999999987765
No 2
>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}
Probab=100.00 E-value=1e-45 Score=280.13 Aligned_cols=136 Identities=35% Similarity=0.661 Sum_probs=128.0
Q ss_pred CCCeeEEEeC-CCCCcccchHHHHHHhhcccceEEEecCCCcCchhhHHHHHHHHHhhhc-CCeeEEeEEeecCCccccc
Q 047923 2 RQNIQTFIDD-QLNRGDEISESIAYAIESPAISVIIFSEGYPFSRWCLHELVKILKYKKE-YAHIVIPGFYRGDPSEVRS 79 (190)
Q Consensus 2 ~~gi~~f~d~-~~~~g~~~~~~l~~ai~~s~~~ivv~S~~y~~S~wcl~El~~i~~~~~~-~~~~v~PvFy~v~ps~Vr~ 79 (190)
++||++|+|+ ++++|+.|.++|++||++|+++|+|||+||++|+|||+||++|++|++. ++++|+||||+|+|++||+
T Consensus 61 ~~GI~~f~D~~el~~G~~I~~~l~~aIe~Sri~IvV~S~nYa~S~WCl~EL~~I~e~~~~~~~~~ViPIFY~VdPs~Vr~ 140 (204)
T 3ozi_A 61 RYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGYADSKWCLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRH 140 (204)
T ss_dssp HTTCCEEEEETTTCCGGGTTTTHHHHHHHCSEEEEEECTTGGGCHHHHHHHHHHHHHHHHCTTSEECCEEESSCHHHHHH
T ss_pred HCCCcEEEeCCccCCCCchHHHHHHHHHhCcEeeEEEEcccccCcHHHHHHHHHHHHHHhcCCeeeEEEEeecCHHHHHh
Confidence 5799999998 9999999999999999999999999999999999999999999999875 5789999999999999999
Q ss_pred cCCchhhHHHHHHHhhhhhhHHHHhHHHHHHHhhccccccCc----hhhhHHHHHHHHHhhhhh
Q 047923 80 QTGSFGNSFSKLEERFNENSEKLQSWRNATKEAASFMAFILP----ESELIKEVVNQILKRLAE 139 (190)
Q Consensus 80 q~g~~~~~f~~~~~~~~~~~e~v~kWr~AL~ev~~~~g~~~~----e~~~i~~iv~~v~~~l~~ 139 (190)
|+|.||++|.+|+.++.. +++++||.||+++++++||++. +.+++++|+.+|+.+|++
T Consensus 141 q~g~fg~af~~~~~~~~~--~~v~~Wr~AL~~va~lsG~~~~~~~~e~~~i~~Iv~di~~kl~~ 202 (204)
T 3ozi_A 141 QTGCYKKAFRKHANKFDG--QTIQNWKDALKKVGDLKGWHIGKNDKQGAIADKVSADIWSHISK 202 (204)
T ss_dssp TCTTHHHHHHHHTTTSCH--HHHHHHHHHHHHHHTSCBEEECTTSCHHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHhhCH--HHHHHHHHHHHHHhccCceecCCCCCHHHHHHHHHHHHHHHhcc
Confidence 999999999999887743 5799999999999999999986 778999999999999875
No 3
>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}
Probab=99.92 E-value=1.2e-26 Score=170.63 Aligned_cols=90 Identities=18% Similarity=0.313 Sum_probs=84.7
Q ss_pred CCCeeEEEeC-CCCCcccchHHHHHHhhcccceEEEecCCCcCchhhHHHHHHHHHhhhcCCeeEEeEEeecCCcccccc
Q 047923 2 RQNIQTFIDD-QLNRGDEISESIAYAIESPAISVIIFSEGYPFSRWCLHELVKILKYKKEYAHIVIPGFYRGDPSEVRSQ 80 (190)
Q Consensus 2 ~~gi~~f~d~-~~~~g~~~~~~l~~ai~~s~~~ivv~S~~y~~S~wcl~El~~i~~~~~~~~~~v~PvFy~v~ps~Vr~q 80 (190)
++||++|+|+ ++.+|+++.++|.+||++|+++|+|||++|++|.||++||..+++|...+++.|+||||+|+|++||+|
T Consensus 45 ~~gi~v~~D~~~l~~G~~~~~~i~~ai~~s~~~i~v~S~~y~~S~wc~~El~~~~~~~~~~~~~iiPV~~~v~p~~v~~~ 124 (154)
T 3h16_A 45 AAGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGIVVLSTHFFKKEWPQKELDGLFQLESSGRSRILPIWHKVSKDEVASF 124 (154)
T ss_dssp HHTCCEECGGGEECTTCCHHHHHHHHHTSEEEEEEEEEHHHHTTCCCHHHHHHHTCCCTTSCCCEEEEEESCCTGGGTTT
T ss_pred HCCCcEEEcHHhCCCccHHHHHHHHHHHhCcEEEEEeCcchhcChHHHHHHHHHHHHHhcCCCEEEEEEecCCHHHHhhC
Confidence 4699999999 899999999999999999999999999999999999999999999987788899999999999999999
Q ss_pred CCchhhHHHHH
Q 047923 81 TGSFGNSFSKL 91 (190)
Q Consensus 81 ~g~~~~~f~~~ 91 (190)
.|.|++.|...
T Consensus 125 ~~~~~~~~~~~ 135 (154)
T 3h16_A 125 SPTMADKLAFN 135 (154)
T ss_dssp CCCCCSSCCEE
T ss_pred CccHHHHHhhh
Confidence 99999877443
No 4
>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A
Probab=99.82 E-value=2.6e-22 Score=145.96 Aligned_cols=107 Identities=13% Similarity=0.211 Sum_probs=65.9
Q ss_pred CCeeEEEeC-CCCCcccchHHHHHHhhcccceEEEecCCCcCchhhHHHHHHHHHhhhcCCeeEEeEEeecCCccccccC
Q 047923 3 QNIQTFIDD-QLNRGDEISESIAYAIESPAISVIIFSEGYPFSRWCLHELVKILKYKKEYAHIVIPGFYRGDPSEVRSQT 81 (190)
Q Consensus 3 ~gi~~f~d~-~~~~g~~~~~~l~~ai~~s~~~ivv~S~~y~~S~wcl~El~~i~~~~~~~~~~v~PvFy~v~ps~Vr~q~ 81 (190)
+|+++|+|+ ++.+|+++.++|.+||++|+.+|+|||++|++|.||+.||..++.+.......||||||+|+++++....
T Consensus 37 ~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~I~VlS~~y~~S~wc~~El~~al~~~~~~~~~vIpv~~~v~~~~lp~~L 116 (146)
T 3ub2_A 37 ASLRCFLQLRDATPGGAIVSELCQALSSSHCRVLLITPGFLQDPWCKYQMLQALTEAPGAEGCTIPLLSGLSRAAYPPEL 116 (146)
T ss_dssp ----------------CCCEEECCTTCCEEEEEEEECHHHHHCHHHHHHHHHHHHTSSSSSSEEEEEECSCCGGGSCGGG
T ss_pred CCeEEEEECccccccccHHHHHHHHHHhCCEEEEEECcccccCHHHHHHHHHHHHHHhhcCCcEEEEEcCCChhhCCHHH
Confidence 699999999 9999999999999999999999999999999999999999999998633334778999999976653322
Q ss_pred Cch-hhHHHHHHHhhhhhhHHHHhHHHHH
Q 047923 82 GSF-GNSFSKLEERFNENSEKLQSWRNAT 109 (190)
Q Consensus 82 g~~-~~~f~~~~~~~~~~~e~v~kWr~AL 109 (190)
..+ ...+..+...+....+.+.+|++||
T Consensus 117 r~~~~id~~~~d~~f~~l~~~v~~~~~~~ 145 (146)
T 3ub2_A 117 RFMYYVDGRGPDGGFRQVKEAVMRYLQTL 145 (146)
T ss_dssp GGSCCEETTSGGGGHHHHHHHHHHHHTTC
T ss_pred hCeeeeeccChHhhHHHHHHHHHHHHHhc
Confidence 111 0111112223333335678887764
No 5
>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A
Probab=99.68 E-value=1.7e-18 Score=126.29 Aligned_cols=75 Identities=19% Similarity=0.194 Sum_probs=66.4
Q ss_pred CCeeEEEeC-CCCCcccchHHHHHHhhcccceEEEecCCCcCchhhHHHHHHHHH-hhhcCCeeEEeEEee-cCCccc
Q 047923 3 QNIQTFIDD-QLNRGDEISESIAYAIESPAISVIIFSEGYPFSRWCLHELVKILK-YKKEYAHIVIPGFYR-GDPSEV 77 (190)
Q Consensus 3 ~gi~~f~d~-~~~~g~~~~~~l~~ai~~s~~~ivv~S~~y~~S~wcl~El~~i~~-~~~~~~~~v~PvFy~-v~ps~V 77 (190)
.|+++|+|+ ++.+|+++.++|.+||++|++.|+|||++|++|.||+.||..++. +.+.++..||||||. +++..+
T Consensus 33 ~g~~~~~~~rd~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~S~wc~~El~~a~~~~~~~~~~~vIpv~~~~i~~~~~ 110 (149)
T 1fyx_A 33 PPFKLXLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWXKYELDFSHFRLFDENNDAAILILLEPIEKKAI 110 (149)
T ss_dssp SCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTHHHHSCCSCCTTCGGGTTCCEEEESSCCCTTTS
T ss_pred CCeEEeeccccCCCchhHHHHHHHHHHHcCEEEEEeCcchhccchHHHHHHHHHHHHHhcCCCEEEEEEecCCChhhc
Confidence 499999999 999999999999999999999999999999999999999999885 345566789999997 555444
No 6
>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A
Probab=99.67 E-value=4.7e-18 Score=127.25 Aligned_cols=74 Identities=20% Similarity=0.241 Sum_probs=61.9
Q ss_pred CCCeeEEEeC-CCCCcccchHHHHHHhhcccceEEEecCCCcCchhhHHHHHHHHHhh-hcCCeeEEeEEee-cCCc
Q 047923 2 RQNIQTFIDD-QLNRGDEISESIAYAIESPAISVIIFSEGYPFSRWCLHELVKILKYK-KEYAHIVIPGFYR-GDPS 75 (190)
Q Consensus 2 ~~gi~~f~d~-~~~~g~~~~~~l~~ai~~s~~~ivv~S~~y~~S~wcl~El~~i~~~~-~~~~~~v~PvFy~-v~ps 75 (190)
++|+++|+|+ |+.+|+++.++|.+||++|+..|+|||++|++|.||+.||..++.+. +.++..||||||. +.+.
T Consensus 62 ~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~IvVlS~~yl~S~wc~~El~~a~~~~~~~~~~~vIpV~~~~i~~~ 138 (178)
T 2j67_A 62 DGSILICLYESYFDPGKSISENIVSFIEKSYKSIFVLSPNFVQNEWCHYEFYFAHHNLFHENSDHIILILLEPIPFY 138 (178)
T ss_dssp C-CCCEEEHHHHCCTTSCHHHHHHHHHHTEEEEEEEECHHHHHHTGGGTHHHHTTCC-------CEEEEESSCCCGG
T ss_pred cCCeEEEEecccCCCCccHHHHHHHHHHhCCEEEEEecccccccchHHHHHHHHHHHHHhcCCCEEEEEEecCCChH
Confidence 3799999999 99999999999999999999999999999999999999999998643 4566789999998 4433
No 7
>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}
Probab=99.66 E-value=2.5e-17 Score=121.22 Aligned_cols=73 Identities=19% Similarity=0.187 Sum_probs=66.8
Q ss_pred CCCeeEEEeC-CCCCcccchHHHHHHhhcccceEEEecCCCc-CchhhHHHHHHHHHhh-hcCCeeEEeEEeecCC
Q 047923 2 RQNIQTFIDD-QLNRGDEISESIAYAIESPAISVIIFSEGYP-FSRWCLHELVKILKYK-KEYAHIVIPGFYRGDP 74 (190)
Q Consensus 2 ~~gi~~f~d~-~~~~g~~~~~~l~~ai~~s~~~ivv~S~~y~-~S~wcl~El~~i~~~~-~~~~~~v~PvFy~v~p 74 (190)
++|+++|+|+ |+.+|+++.++|.+||++|+..|+|||++|+ .|.||+.|+..++.+. +.++..||||||.--+
T Consensus 39 ~~g~~l~~~~rD~~~G~~i~~~i~~~I~~Sr~~IvVlS~~y~~~S~wc~~El~~a~~~~~~~~~~~vI~I~~~~~~ 114 (159)
T 1t3g_A 39 HYGYKLFIPDRDLIPTGTYIEDVARCVDQSKRLIIVMTPNYVVRRGWSIFELETRLRNMLVTGEIKVILIECSELR 114 (159)
T ss_dssp TSCCCEECHHHHCCCCTTHHHHHHHHHHTBSEEEEEECHHHHHTTTTHHHHHSHHHHHHHHTTSSEEEEEECSCCC
T ss_pred CCCeEEEEEcccccCccchHHHHHHHHHHcCEEEEEEccchhhcChHHHHHHHHHHHHHHhcCCCEEEEEEecccc
Confidence 5899999999 9999999999999999999999999999997 9999999999999876 5667899999988444
No 8
>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A
Probab=99.65 E-value=1.4e-17 Score=122.78 Aligned_cols=72 Identities=18% Similarity=0.178 Sum_probs=65.1
Q ss_pred CCeeEEEeC-CCCCcccchHHHHHHhh-cccceEEEecCCCcCchhhHHHHHHHHHhh-hcCCeeEEeEEeecCC
Q 047923 3 QNIQTFIDD-QLNRGDEISESIAYAIE-SPAISVIIFSEGYPFSRWCLHELVKILKYK-KEYAHIVIPGFYRGDP 74 (190)
Q Consensus 3 ~gi~~f~d~-~~~~g~~~~~~l~~ai~-~s~~~ivv~S~~y~~S~wcl~El~~i~~~~-~~~~~~v~PvFy~v~p 74 (190)
.|+++|+|+ ++.+|+++.++|.+||+ .|+.+|+|||++|++|.||+.||..++.+. +.++..||||||..-+
T Consensus 43 ~g~~~~~~~rd~~~G~~i~~~i~~~I~~~Sr~~IvVlS~~y~~S~wc~~El~~a~~~~~~~~~~~vIpV~~~~~~ 117 (160)
T 2js7_A 43 YRLKLCVSDRDVLPGTCVWSIASELIEKRCRRMVVVVSDDYLQSKECDFQTKFALSLSPGAHQKRLIPIKYKAMK 117 (160)
T ss_dssp SCCCCEESCCSSSSSCSCCCCCGGGHHHHEEEEEEECCHHHHHSHHHHHHHHHHHHHCTTHHHHTEEEEESSCCC
T ss_pred CceEEEEeCCCCCCCCcHHHHHHHHHHHhCCEEEEEECcchhcCHHHHHHHHHHHHHHHccCCCEEEEEEEcccc
Confidence 579999999 99999999999999999 799999999999999999999999999875 4455789999998543
No 9
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.22 E-value=4.7e-12 Score=114.56 Aligned_cols=74 Identities=14% Similarity=0.174 Sum_probs=66.4
Q ss_pred CCCeeEEEeC-CCCCcccchHHHHHHhhcccceEEEecCCCcCchhhHHHHHHHHHhh-hcCCeeEEeEEeecCCc
Q 047923 2 RQNIQTFIDD-QLNRGDEISESIAYAIESPAISVIIFSEGYPFSRWCLHELVKILKYK-KEYAHIVIPGFYRGDPS 75 (190)
Q Consensus 2 ~~gi~~f~d~-~~~~g~~~~~~l~~ai~~s~~~ivv~S~~y~~S~wcl~El~~i~~~~-~~~~~~v~PvFy~v~ps 75 (190)
++|+++|+++ |+.+|+.+.+++.+||++||..|+|+|++|+.|.||..|+..++.+. +.++..||||||+--|.
T Consensus 700 ~~~~~~~~~~rd~~~G~~~~~~i~~~i~~sr~~i~vls~~~~~s~wc~~e~~~a~~~~~~~~~~~~i~i~~~~~~~ 775 (844)
T 3j0a_A 700 QNRFNLCFEERDFVPGENRIANIQDAIWNSRKIVCLVSRHFLRDGWCLEAFSYAQGRCLSDLNSALIMVVVGSLSQ 775 (844)
T ss_dssp TTCSCEECSSSSCCSSSCHHHHHHHHHHHSSEEEEEECTTHHHHTSTTHHHHHHHSCCCCSSCTTEEEEESSCCCS
T ss_pred CCceEEEEEccccCCCchHHHHHHHHHHHhCeEEEEeccccccChHHHHHHHHHHHHHHHhcCCcEEEEEeccCCh
Confidence 5789999999 99999999999999999999999999999999999999998877654 55677899999985443
No 10
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=98.98 E-value=5.4e-10 Score=96.77 Aligned_cols=41 Identities=27% Similarity=0.285 Sum_probs=36.1
Q ss_pred cccchhHHHHHHHhhhc-CCCeEEEEEEcCCCCcHHHHhccC
Q 047923 150 VGRESRVEIIESLLAAE-SKDVYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 150 vG~d~~~~~~~~~l~~~-~~~~~vi~i~G~gGiGKTTla~~v 190 (190)
+||+.+++++.++|... ...+++++|+||||+||||||+.+
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v 172 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQA 172 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHH
Confidence 59999999999999765 335899999999999999999863
No 11
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=98.80 E-value=2.6e-09 Score=99.21 Aligned_cols=46 Identities=22% Similarity=0.282 Sum_probs=40.9
Q ss_pred cccccccccchhHHHHHHHhhhcCCCeEEEEEEcCCCCcHHHHhcc
Q 047923 144 DKENQLVGRESRVEIIESLLAAESKDVYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 144 ~~~~~~vG~d~~~~~~~~~l~~~~~~~~vi~i~G~gGiGKTTla~~ 189 (190)
.....+|||+..++++.++|....+.+++++|+||||+||||||+.
T Consensus 121 ~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~ 166 (1249)
T 3sfz_A 121 QRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAE 166 (1249)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHH
T ss_pred CCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHH
Confidence 4556799999999999999977666799999999999999999974
No 12
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=98.76 E-value=4.1e-09 Score=91.58 Aligned_cols=46 Identities=22% Similarity=0.281 Sum_probs=40.3
Q ss_pred cccccccccchhHHHHHHHhhhcCCCeEEEEEEcCCCCcHHHHhcc
Q 047923 144 DKENQLVGRESRVEIIESLLAAESKDVYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 144 ~~~~~~vG~d~~~~~~~~~l~~~~~~~~vi~i~G~gGiGKTTla~~ 189 (190)
.....+|||+..++.+.++|...+.+.++++|+||||+||||||+.
T Consensus 121 ~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~ 166 (591)
T 1z6t_A 121 QRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAE 166 (591)
T ss_dssp CCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHH
T ss_pred CCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHH
Confidence 4556899999999999999986556689999999999999999974
No 13
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=98.62 E-value=6e-09 Score=95.56 Aligned_cols=40 Identities=25% Similarity=0.066 Sum_probs=35.4
Q ss_pred ccccchhHHHHHHHhhhcCCCeEEEEEEcCCCCcHHHHhcc
Q 047923 149 LVGRESRVEIIESLLAAESKDVYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 149 ~vG~d~~~~~~~~~l~~~~~~~~vi~i~G~gGiGKTTla~~ 189 (190)
.|||+..++.+.++|... +.+++++|+||||+||||||++
T Consensus 130 ~VGRe~eLeeL~elL~~~-d~~RVV~IvGmGGIGKTTLAk~ 169 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLEL-RPAKNVLIDGVLGSGKTWVALD 169 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHC-CSSCEEEECCSTTSSHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhcc-CCCeEEEEEcCCCccHHHHHHH
Confidence 499999999999998753 3489999999999999999985
No 14
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=97.99 E-value=3e-06 Score=69.92 Aligned_cols=46 Identities=28% Similarity=0.270 Sum_probs=35.4
Q ss_pred cccccccccchhHHHHHHHh-hh---c---CCCeEEEEEEcCCCCcHHHHhcc
Q 047923 144 DKENQLVGRESRVEIIESLL-AA---E---SKDVYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 144 ~~~~~~vG~d~~~~~~~~~l-~~---~---~~~~~vi~i~G~gGiGKTTla~~ 189 (190)
..+..++||+.+++.+..+| .. + ....-+|||+|++|+||||||++
T Consensus 19 ~~p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~ 71 (412)
T 1w5s_A 19 YIPPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKF 71 (412)
T ss_dssp CCCSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHH
T ss_pred cCCCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHH
Confidence 34578999999999999888 53 1 22345556699999999999985
No 15
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.95 E-value=4.6e-06 Score=60.91 Aligned_cols=43 Identities=21% Similarity=0.306 Sum_probs=34.7
Q ss_pred ccccccccchhHHHHHHHhhhcCCCeEEEEEEcCCCCcHHHHhcc
Q 047923 145 KENQLVGRESRVEIIESLLAAESKDVYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 145 ~~~~~vG~d~~~~~~~~~l~~~~~~~~vi~i~G~gGiGKTTla~~ 189 (190)
....++|++..++.+.+.+... ..+.+-|+|.+|+||||||++
T Consensus 20 ~~~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKT~l~~~ 62 (195)
T 1jbk_A 20 KLDPVIGRDEEIRRTIQVLQRR--TKNNPVLIGEPGVGKTAIVEG 62 (195)
T ss_dssp CSCCCCSCHHHHHHHHHHHTSS--SSCEEEEECCTTSCHHHHHHH
T ss_pred cccccccchHHHHHHHHHHhcC--CCCceEEECCCCCCHHHHHHH
Confidence 4467999999999998888653 234467999999999999975
No 16
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.87 E-value=5e-06 Score=67.66 Aligned_cols=46 Identities=26% Similarity=0.357 Sum_probs=37.8
Q ss_pred cccccccccchhHHHHHHHhhhc--CCCeEEEEEEcCCCCcHHHHhcc
Q 047923 144 DKENQLVGRESRVEIIESLLAAE--SKDVYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 144 ~~~~~~vG~d~~~~~~~~~l~~~--~~~~~vi~i~G~gGiGKTTla~~ 189 (190)
..+..++||+..++.+.+++... ....+.+.|+|.+|+||||||++
T Consensus 17 ~~p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~ 64 (386)
T 2qby_A 17 YIPDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKF 64 (386)
T ss_dssp CCCSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHH
T ss_pred cCCCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHH
Confidence 34578999999999999988742 33456788999999999999985
No 17
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.80 E-value=1.2e-05 Score=65.66 Aligned_cols=45 Identities=13% Similarity=0.072 Sum_probs=36.8
Q ss_pred cccccccchhHHHHHHHhhh--cCCCeEEEEEEcCCCCcHHHHhccC
Q 047923 146 ENQLVGRESRVEIIESLLAA--ESKDVYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 146 ~~~~vG~d~~~~~~~~~l~~--~~~~~~vi~i~G~gGiGKTTla~~v 190 (190)
+..++|++..++.+..++.. .....+.+-|+|.+|+||||||+++
T Consensus 19 p~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l 65 (384)
T 2qby_B 19 FKEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYI 65 (384)
T ss_dssp CSSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHH
Confidence 46899999999999988764 2333568899999999999999853
No 18
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=97.74 E-value=1.1e-05 Score=65.67 Aligned_cols=47 Identities=23% Similarity=0.294 Sum_probs=37.9
Q ss_pred cccccccccchhHHHHHHHhhhc--CCCeEEEEEEcCCCCcHHHHhccC
Q 047923 144 DKENQLVGRESRVEIIESLLAAE--SKDVYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 144 ~~~~~~vG~d~~~~~~~~~l~~~--~~~~~vi~i~G~gGiGKTTla~~v 190 (190)
..+..++|++..++.+..++... ....+.+-|+|.+|+||||||+++
T Consensus 16 ~~p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~ 64 (387)
T 2v1u_A 16 YVPDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLV 64 (387)
T ss_dssp CCCSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHH
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHH
Confidence 34578999999999999988543 334567889999999999999853
No 19
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.73 E-value=2.5e-05 Score=58.91 Aligned_cols=45 Identities=24% Similarity=0.257 Sum_probs=36.0
Q ss_pred cccccccccchhHHHHHHHhhhcCCCeEEEEEEcCCCCcHHHHhcc
Q 047923 144 DKENQLVGRESRVEIIESLLAAESKDVYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 144 ~~~~~~vG~d~~~~~~~~~l~~~~~~~~vi~i~G~gGiGKTTla~~ 189 (190)
....+++|++..++.+..++..... -+.+-|+|.+|+||||||++
T Consensus 20 ~~~~~~~g~~~~~~~l~~~l~~~~~-~~~~ll~G~~G~GKT~l~~~ 64 (250)
T 1njg_A 20 QTFADVVGQEHVLTALANGLSLGRI-HHAYLFSGTRGVGKTSIARL 64 (250)
T ss_dssp CSGGGCCSCHHHHHHHHHHHHHTCC-CSEEEEECSTTSCHHHHHHH
T ss_pred ccHHHHhCcHHHHHHHHHHHHcCCC-CeEEEEECCCCCCHHHHHHH
Confidence 3446799999999999988876421 23678999999999999975
No 20
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.64 E-value=1.9e-05 Score=57.43 Aligned_cols=43 Identities=21% Similarity=0.324 Sum_probs=34.1
Q ss_pred ccccccccchhHHHHHHHhhhcCCCeEEEEEEcCCCCcHHHHhcc
Q 047923 145 KENQLVGRESRVEIIESLLAAESKDVYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 145 ~~~~~vG~d~~~~~~~~~l~~~~~~~~vi~i~G~gGiGKTTla~~ 189 (190)
...+++|++..++.+.+.+... ..+.+-|+|.+|+||||||++
T Consensus 20 ~~~~~~g~~~~~~~l~~~l~~~--~~~~vll~G~~G~GKT~la~~ 62 (187)
T 2p65_A 20 KLDPVIGRDTEIRRAIQILSRR--TKNNPILLGDPGVGKTAIVEG 62 (187)
T ss_dssp CSCCCCSCHHHHHHHHHHHTSS--SSCEEEEESCGGGCHHHHHHH
T ss_pred ccchhhcchHHHHHHHHHHhCC--CCCceEEECCCCCCHHHHHHH
Confidence 3467999999999998887653 233456999999999999975
No 21
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.60 E-value=3.8e-05 Score=62.61 Aligned_cols=46 Identities=22% Similarity=0.216 Sum_probs=36.7
Q ss_pred cccccccccchhHHHHHHHhhhc----CCCeEEEEEEcCCCCcHHHHhcc
Q 047923 144 DKENQLVGRESRVEIIESLLAAE----SKDVYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 144 ~~~~~~vG~d~~~~~~~~~l~~~----~~~~~vi~i~G~gGiGKTTla~~ 189 (190)
..+..++|++..++.+..++... ....+.+.|+|.+|+||||||++
T Consensus 14 ~~p~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~ 63 (389)
T 1fnn_A 14 YVPKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRK 63 (389)
T ss_dssp CCCSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHH
T ss_pred cCCCCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHH
Confidence 34468999999999998888652 22245788999999999999975
No 22
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.51 E-value=4.4e-05 Score=62.42 Aligned_cols=65 Identities=18% Similarity=0.207 Sum_probs=43.3
Q ss_pred hhhhHHHHHHHHHhhhhhhhhccccccccccchhHHHHHHHhhh----------cCCCeEEEEEEcCCCCcHHHHhccC
Q 047923 122 ESELIKEVVNQILKRLAEVLLCDKENQLVGRESRVEIIESLLAA----------ESKDVYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 122 e~~~i~~iv~~v~~~l~~~~~~~~~~~~vG~d~~~~~~~~~l~~----------~~~~~~vi~i~G~gGiGKTTla~~v 190 (190)
+..+++.+...+....+ + ....+++|.+..++.+.+.+.. .....+-+-|+|.+|+||||||+++
T Consensus 63 ~~~~~~~i~~~i~~~~~---~-~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~ai 137 (357)
T 3d8b_A 63 EPKMIELIMNEIMDHGP---P-VNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCI 137 (357)
T ss_dssp CHHHHHHHHHHTBCCSC---C-CCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHH
T ss_pred ChHHHHHHHhhcccCCC---C-CCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHH
Confidence 44555555554433322 2 3446799999999999887653 1112456779999999999999864
No 23
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.50 E-value=5.3e-05 Score=59.91 Aligned_cols=47 Identities=19% Similarity=0.240 Sum_probs=35.5
Q ss_pred cccccccccchhHHHHHHHhhhc----------CCCeEEEEEEcCCCCcHHHHhccC
Q 047923 144 DKENQLVGRESRVEIIESLLAAE----------SKDVYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 144 ~~~~~~vG~d~~~~~~~~~l~~~----------~~~~~vi~i~G~gGiGKTTla~~v 190 (190)
....+++|.+..++.+.+++... ....+.+-|+|.+|.||||||+++
T Consensus 18 ~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~l 74 (297)
T 3b9p_A 18 VEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAV 74 (297)
T ss_dssp CCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHH
T ss_pred CCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHH
Confidence 34568999999999998876431 112356789999999999999863
No 24
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=97.46 E-value=9.3e-05 Score=58.85 Aligned_cols=44 Identities=30% Similarity=0.344 Sum_probs=35.7
Q ss_pred cccccccccchhHHHHHHHhhhcCCCeEEEEEEcCCCCcHHHHhcc
Q 047923 144 DKENQLVGRESRVEIIESLLAAESKDVYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 144 ~~~~~~vG~d~~~~~~~~~l~~~~~~~~vi~i~G~gGiGKTTla~~ 189 (190)
....+++|++..++.+..++..+. ...+-++|.+|+||||+|++
T Consensus 22 ~~~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~la~~ 65 (327)
T 1iqp_A 22 QRLDDIVGQEHIVKRLKHYVKTGS--MPHLLFAGPPGVGKTTAALA 65 (327)
T ss_dssp CSTTTCCSCHHHHHHHHHHHHHTC--CCEEEEESCTTSSHHHHHHH
T ss_pred CCHHHhhCCHHHHHHHHHHHHcCC--CCeEEEECcCCCCHHHHHHH
Confidence 344679999999999998887653 33378999999999999985
No 25
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.36 E-value=0.00013 Score=57.85 Aligned_cols=44 Identities=20% Similarity=0.320 Sum_probs=35.3
Q ss_pred cccccccccchhHHHHHHHhhhcCCCeEEEEEEcCCCCcHHHHhcc
Q 047923 144 DKENQLVGRESRVEIIESLLAAESKDVYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 144 ~~~~~~vG~d~~~~~~~~~l~~~~~~~~vi~i~G~gGiGKTTla~~ 189 (190)
....+++|++..++.+.+++..+. ...+-++|.+|+||||+|++
T Consensus 18 ~~~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKt~la~~ 61 (323)
T 1sxj_B 18 QVLSDIVGNKETIDRLQQIAKDGN--MPHMIISGMPGIGKTTSVHC 61 (323)
T ss_dssp SSGGGCCSCTHHHHHHHHHHHSCC--CCCEEEECSTTSSHHHHHHH
T ss_pred CCHHHHHCCHHHHHHHHHHHHcCC--CCeEEEECcCCCCHHHHHHH
Confidence 334679999999999998886543 23378999999999999975
No 26
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.35 E-value=9.4e-05 Score=58.04 Aligned_cols=47 Identities=19% Similarity=0.234 Sum_probs=35.6
Q ss_pred cccccccccchhHHHHHHHhhhc-----------CCCeEEEEEEcCCCCcHHHHhccC
Q 047923 144 DKENQLVGRESRVEIIESLLAAE-----------SKDVYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 144 ~~~~~~vG~d~~~~~~~~~l~~~-----------~~~~~vi~i~G~gGiGKTTla~~v 190 (190)
....+++|.+..++.+.+.+... ....+-+-|+|.+|+||||||+++
T Consensus 14 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~l 71 (285)
T 3h4m_A 14 VRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAV 71 (285)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHH
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHH
Confidence 44567999999999988876431 122345779999999999999864
No 27
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=97.24 E-value=0.00014 Score=58.42 Aligned_cols=46 Identities=24% Similarity=0.282 Sum_probs=36.1
Q ss_pred ccccccccchhHHHHHHHhhhc---CCCeEEEEEEcCCCCcHHHHhccC
Q 047923 145 KENQLVGRESRVEIIESLLAAE---SKDVYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 145 ~~~~~vG~d~~~~~~~~~l~~~---~~~~~vi~i~G~gGiGKTTla~~v 190 (190)
...+++|++..++.+..++... ......+-|+|.+|+||||||+++
T Consensus 27 ~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i 75 (338)
T 3pfi_A 27 NFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANII 75 (338)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHH
T ss_pred CHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHH
Confidence 3467999999999998888652 223445779999999999999863
No 28
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.18 E-value=0.00023 Score=57.31 Aligned_cols=45 Identities=16% Similarity=0.265 Sum_probs=35.3
Q ss_pred cccccccccchhHHHHHHHhhhcCCCeEEEEEEcCCCCcHHHHhccC
Q 047923 144 DKENQLVGRESRVEIIESLLAAESKDVYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 144 ~~~~~~vG~d~~~~~~~~~l~~~~~~~~vi~i~G~gGiGKTTla~~v 190 (190)
....+++|.+..++.+..++.... ...+-++|.+|+||||+|+++
T Consensus 34 ~~~~~i~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~la~~l 78 (353)
T 1sxj_D 34 KNLDEVTAQDHAVTVLKKTLKSAN--LPHMLFYGPPGTGKTSTILAL 78 (353)
T ss_dssp SSTTTCCSCCTTHHHHHHHTTCTT--CCCEEEECSTTSSHHHHHHHH
T ss_pred CCHHHhhCCHHHHHHHHHHHhcCC--CCEEEEECCCCCCHHHHHHHH
Confidence 344679999999999988886542 222789999999999999863
No 29
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.10 E-value=0.00023 Score=57.56 Aligned_cols=44 Identities=23% Similarity=0.294 Sum_probs=32.2
Q ss_pred ccccccchhHHHHHHHhhhc---CCCeEEEEEEcCCCCcHHHHhccC
Q 047923 147 NQLVGRESRVEIIESLLAAE---SKDVYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 147 ~~~vG~d~~~~~~~~~l~~~---~~~~~vi~i~G~gGiGKTTla~~v 190 (190)
+.++|.+.-++.+...+... ......+.++|.+|.||||||+++
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~i 71 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHII 71 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHH
T ss_pred HHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHH
Confidence 46788877777776655432 223466899999999999999863
No 30
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.09 E-value=0.00026 Score=56.11 Aligned_cols=42 Identities=24% Similarity=0.242 Sum_probs=30.7
Q ss_pred cccccchhHHHHHHHhhhc-------------CCCeEEEEEEcCCCCcHHHHhcc
Q 047923 148 QLVGRESRVEIIESLLAAE-------------SKDVYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 148 ~~vG~d~~~~~~~~~l~~~-------------~~~~~vi~i~G~gGiGKTTla~~ 189 (190)
.++|.+..++.+.+++..- .....-+-|+|.+|+||||||++
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~ 86 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALK 86 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHH
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHH
Confidence 4788888877777655421 22344677999999999999975
No 31
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.08 E-value=0.0013 Score=56.18 Aligned_cols=20 Identities=30% Similarity=0.511 Sum_probs=18.1
Q ss_pred eEEEEEEcCCCCcHHHHhcc
Q 047923 170 VYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~ 189 (190)
-.+++|+|..|.|||||++.
T Consensus 293 GeVI~LVGpNGSGKTTLl~~ 312 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGK 312 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHH
T ss_pred CeEEEEECCCcccHHHHHHH
Confidence 46999999999999999875
No 32
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.01 E-value=0.0018 Score=52.27 Aligned_cols=20 Identities=35% Similarity=0.403 Sum_probs=18.0
Q ss_pred eEEEEEEcCCCCcHHHHhcc
Q 047923 170 VYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~ 189 (190)
-.+++|+|.+|.||||++..
T Consensus 105 ~~vI~ivG~~G~GKTT~~~~ 124 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSLAK 124 (320)
T ss_dssp CEEEEEESSTTSSHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 67999999999999999864
No 33
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.98 E-value=0.00041 Score=56.30 Aligned_cols=45 Identities=22% Similarity=0.155 Sum_probs=32.6
Q ss_pred cccccccchhHHHHHHHhh---hcCCCeEEEEEEcCCCCcHHHHhccC
Q 047923 146 ENQLVGRESRVEIIESLLA---AESKDVYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 146 ~~~~vG~d~~~~~~~~~l~---~~~~~~~vi~i~G~gGiGKTTla~~v 190 (190)
..+++|.+..++.+..++. .....-+.+-|+|.+|+||||||+++
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~l 90 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGM 90 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHH
T ss_pred hhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHH
Confidence 5689999988777654443 22222246779999999999999863
No 34
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.92 E-value=0.00052 Score=58.78 Aligned_cols=47 Identities=26% Similarity=0.242 Sum_probs=36.5
Q ss_pred cccccccccchhHHHHHHHhhhcC---------------CCeEEEEEEcCCCCcHHHHhccC
Q 047923 144 DKENQLVGRESRVEIIESLLAAES---------------KDVYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 144 ~~~~~~vG~d~~~~~~~~~l~~~~---------------~~~~vi~i~G~gGiGKTTla~~v 190 (190)
....+++|++..++.+.+++.... ...+.+-|+|.+|+||||||+++
T Consensus 36 ~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~l 97 (516)
T 1sxj_A 36 TNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLV 97 (516)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHH
T ss_pred CCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHH
Confidence 344679999999999999886410 12467889999999999999863
No 35
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.91 E-value=0.00051 Score=55.14 Aligned_cols=47 Identities=21% Similarity=0.243 Sum_probs=34.7
Q ss_pred cccccccccchhHHHHHHHhhh----------cCCCeEEEEEEcCCCCcHHHHhccC
Q 047923 144 DKENQLVGRESRVEIIESLLAA----------ESKDVYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 144 ~~~~~~vG~d~~~~~~~~~l~~----------~~~~~~vi~i~G~gGiGKTTla~~v 190 (190)
....+++|.+..++.+.+++.. ....-+-+-++|.+|.|||+||+++
T Consensus 15 ~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~ai 71 (322)
T 3eie_A 15 VKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAV 71 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHH
T ss_pred CCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHH
Confidence 3446799999999998887631 1111345779999999999999864
No 36
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.86 E-value=0.00032 Score=52.15 Aligned_cols=45 Identities=18% Similarity=0.052 Sum_probs=27.7
Q ss_pred cccccccchhHH----HHHHHhhhcCCCe--EEEEEEcCCCCcHHHHhccC
Q 047923 146 ENQLVGRESRVE----IIESLLAAESKDV--YILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 146 ~~~~vG~d~~~~----~~~~~l~~~~~~~--~vi~i~G~gGiGKTTla~~v 190 (190)
.+++++.+.... .+.+++....... +.+-|+|.+|+||||||+++
T Consensus 24 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i 74 (202)
T 2w58_A 24 LSDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAI 74 (202)
T ss_dssp TTSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHH
T ss_pred HhhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHH
Confidence 356776553333 3334443322211 57789999999999999863
No 37
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.81 E-value=0.0029 Score=51.14 Aligned_cols=20 Identities=30% Similarity=0.416 Sum_probs=18.2
Q ss_pred eEEEEEEcCCCCcHHHHhcc
Q 047923 170 VYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~ 189 (190)
-.+++|+|..|.|||||++.
T Consensus 129 g~vi~lvG~nGaGKTTll~~ 148 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTIAK 148 (328)
T ss_dssp SEEEEEECCTTSSHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 57999999999999999874
No 38
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.81 E-value=0.00033 Score=56.54 Aligned_cols=44 Identities=11% Similarity=-0.049 Sum_probs=34.9
Q ss_pred ccccccchhHHHHHHHhhh--cCCCeEEEEEEcCCCCcHHHHhccC
Q 047923 147 NQLVGRESRVEIIESLLAA--ESKDVYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 147 ~~~vG~d~~~~~~~~~l~~--~~~~~~vi~i~G~gGiGKTTla~~v 190 (190)
.-+.|||.+.+.+...|.. ....-..+=|+|.+|.|||+++++|
T Consensus 20 ~~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v 65 (318)
T 3te6_A 20 ELLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDV 65 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHH
Confidence 3488999999999887764 2334566789999999999999864
No 39
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=96.79 E-value=0.00071 Score=55.22 Aligned_cols=47 Identities=21% Similarity=0.233 Sum_probs=34.1
Q ss_pred cccccccccchhHHHHHHHhhhc----------CCCeEEEEEEcCCCCcHHHHhccC
Q 047923 144 DKENQLVGRESRVEIIESLLAAE----------SKDVYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 144 ~~~~~~vG~d~~~~~~~~~l~~~----------~~~~~vi~i~G~gGiGKTTla~~v 190 (190)
....+++|.+..++.+.+.+... ....+-+-|+|.+|+||||||+++
T Consensus 48 ~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~al 104 (355)
T 2qp9_X 48 VKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAV 104 (355)
T ss_dssp CCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHH
Confidence 34467999999999888776321 111234678999999999999864
No 40
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=96.79 E-value=0.00065 Score=57.54 Aligned_cols=42 Identities=24% Similarity=0.378 Sum_probs=33.2
Q ss_pred ccccccchhHHHHHHHhhhcCCCeEEEEEEcCCCCcHHHHhccC
Q 047923 147 NQLVGRESRVEIIESLLAAESKDVYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 147 ~~~vG~d~~~~~~~~~l~~~~~~~~vi~i~G~gGiGKTTla~~v 190 (190)
..++|++..++.+...|..... - -+-|+|.+|+||||||+++
T Consensus 180 d~iiGr~~~i~~l~~~l~r~~~-~-~~LL~G~pG~GKT~la~~l 221 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRRTK-N-NPVLIGEPGVGKTAIAEGL 221 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCSSS-C-EEEEESCTTTTTHHHHHHH
T ss_pred CCccCcHHHHHHHHHHHhccCC-C-CeEEECCCCCCHHHHHHHH
Confidence 5689999999999988865322 2 2358999999999999863
No 41
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.78 E-value=0.0015 Score=52.36 Aligned_cols=41 Identities=15% Similarity=0.130 Sum_probs=31.9
Q ss_pred cccccccchhHHHHHHHhhhcCCCeEEEEEEcCCCCcHHHHhccC
Q 047923 146 ENQLVGRESRVEIIESLLAAESKDVYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 146 ~~~~vG~d~~~~~~~~~l~~~~~~~~vi~i~G~gGiGKTTla~~v 190 (190)
...++|.+..++.+...+.... -+-++|.+|+|||+||+++
T Consensus 26 ~~~i~g~~~~~~~l~~~l~~~~----~vll~G~pGtGKT~la~~l 66 (331)
T 2r44_A 26 GKVVVGQKYMINRLLIGICTGG----HILLEGVPGLAKTLSVNTL 66 (331)
T ss_dssp TTTCCSCHHHHHHHHHHHHHTC----CEEEESCCCHHHHHHHHHH
T ss_pred ccceeCcHHHHHHHHHHHHcCC----eEEEECCCCCcHHHHHHHH
Confidence 3578999988888877665532 3668999999999999863
No 42
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.75 E-value=0.0032 Score=50.16 Aligned_cols=20 Identities=40% Similarity=0.544 Sum_probs=17.7
Q ss_pred eEEEEEEcCCCCcHHHHhcc
Q 047923 170 VYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~ 189 (190)
-.++++.|.+|+||||++..
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~ 117 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGK 117 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 57899999999999999864
No 43
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.75 E-value=0.0006 Score=53.96 Aligned_cols=44 Identities=16% Similarity=0.339 Sum_probs=33.4
Q ss_pred ccccccchhHHHHHHHhhhcC------C-CeEEEEEEcCCCCcHHHHhccC
Q 047923 147 NQLVGRESRVEIIESLLAAES------K-DVYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 147 ~~~vG~d~~~~~~~~~l~~~~------~-~~~vi~i~G~gGiGKTTla~~v 190 (190)
..++|.+..++.+...+.... . ....+.++|.+|+||||+|+++
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~l 67 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTL 67 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHH
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHH
Confidence 458899888888877765421 1 1457889999999999999863
No 44
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=96.72 E-value=0.00079 Score=56.77 Aligned_cols=44 Identities=23% Similarity=0.386 Sum_probs=33.8
Q ss_pred ccccccccchhH---HHHHHHhhhcCCCeEEEEEEcCCCCcHHHHhccC
Q 047923 145 KENQLVGRESRV---EIIESLLAAESKDVYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 145 ~~~~~vG~d~~~---~~~~~~l~~~~~~~~vi~i~G~gGiGKTTla~~v 190 (190)
...+++|.+..+ ..+...+... ....+-|||.+|+||||||+++
T Consensus 24 ~l~~ivGq~~~~~~~~~L~~~i~~~--~~~~vLL~GppGtGKTtlAr~i 70 (447)
T 3pvs_A 24 NLAQYIGQQHLLAAGKPLPRAIEAG--HLHSMILWGPPGTGKTTLAEVI 70 (447)
T ss_dssp STTTCCSCHHHHSTTSHHHHHHHHT--CCCEEEEECSTTSSHHHHHHHH
T ss_pred CHHHhCCcHHHHhchHHHHHHHHcC--CCcEEEEECCCCCcHHHHHHHH
Confidence 346789998777 6666666654 3467889999999999999863
No 45
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.65 E-value=0.0007 Score=51.10 Aligned_cols=42 Identities=17% Similarity=0.273 Sum_probs=26.3
Q ss_pred cccccccc---hhHHHHHHHhhhcCCCeEEEEEEcCCCCcHHHHhcc
Q 047923 146 ENQLVGRE---SRVEIIESLLAAESKDVYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 146 ~~~~vG~d---~~~~~~~~~l~~~~~~~~vi~i~G~gGiGKTTla~~ 189 (190)
.++++|.+ ..++.+..++... ..+.+-|+|.+|+||||||++
T Consensus 27 ~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ll~G~~G~GKT~la~~ 71 (242)
T 3bos_A 27 FTSYYPAAGNDELIGALKSAASGD--GVQAIYLWGPVKSGRTHLIHA 71 (242)
T ss_dssp TTTSCC--CCHHHHHHHHHHHHTC--SCSEEEEECSTTSSHHHHHHH
T ss_pred hhhccCCCCCHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHH
Confidence 35677743 3333444443332 345677999999999999975
No 46
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.65 E-value=0.001 Score=52.16 Aligned_cols=46 Identities=22% Similarity=0.216 Sum_probs=30.5
Q ss_pred ccccccccchhHHHHHHHhhhc---------CCC-eEEEEEEcCCCCcHHHHhccC
Q 047923 145 KENQLVGRESRVEIIESLLAAE---------SKD-VYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 145 ~~~~~vG~d~~~~~~~~~l~~~---------~~~-~~vi~i~G~gGiGKTTla~~v 190 (190)
..++++|.+..++++.++...- +-. -+-+.|+|..|.||||||+++
T Consensus 38 ~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i 93 (278)
T 1iy2_A 38 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAV 93 (278)
T ss_dssp CGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHH
T ss_pred CHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHH
Confidence 3456788887777666554321 001 112889999999999999863
No 47
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.60 E-value=0.0039 Score=49.92 Aligned_cols=20 Identities=30% Similarity=0.476 Sum_probs=18.1
Q ss_pred eEEEEEEcCCCCcHHHHhcc
Q 047923 170 VYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~ 189 (190)
-.++.|+|.+|.||||++..
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~ 123 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGK 123 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHH
Confidence 57999999999999999864
No 48
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.60 E-value=0.0019 Score=50.26 Aligned_cols=44 Identities=16% Similarity=0.098 Sum_probs=29.8
Q ss_pred ccccccchhHHHHHH-------Hhhhc-CCCeEEEEEEcCCCCcHHHHhccC
Q 047923 147 NQLVGRESRVEIIES-------LLAAE-SKDVYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 147 ~~~vG~d~~~~~~~~-------~l~~~-~~~~~vi~i~G~gGiGKTTla~~v 190 (190)
.+++|.+...+.+.. .+... .....-+-|+|.+|+||||||+++
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~i 84 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKI 84 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHH
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHH
Confidence 457777766655554 22211 234667789999999999999863
No 49
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=96.60 E-value=0.00098 Score=54.88 Aligned_cols=46 Identities=20% Similarity=0.281 Sum_probs=34.8
Q ss_pred ccccccccchhHHHHHHHhhhc----------CCCeEEEEEEcCCCCcHHHHhccC
Q 047923 145 KENQLVGRESRVEIIESLLAAE----------SKDVYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 145 ~~~~~vG~d~~~~~~~~~l~~~----------~~~~~vi~i~G~gGiGKTTla~~v 190 (190)
...+++|.+..++.+.+++... ....+-+-|+|.+|+|||+||+++
T Consensus 113 ~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ai 168 (389)
T 3vfd_A 113 KFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAV 168 (389)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHH
T ss_pred ChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHH
Confidence 3467999999999998876321 011356779999999999999864
No 50
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.56 E-value=0.0073 Score=48.19 Aligned_cols=20 Identities=35% Similarity=0.277 Sum_probs=18.0
Q ss_pred eEEEEEEcCCCCcHHHHhcc
Q 047923 170 VYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~ 189 (190)
-.+++|+|..|.|||||++.
T Consensus 100 g~vi~lvG~nGsGKTTll~~ 119 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGK 119 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHH
Confidence 46999999999999999875
No 51
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.54 E-value=0.0095 Score=50.12 Aligned_cols=20 Identities=35% Similarity=0.341 Sum_probs=17.8
Q ss_pred eEEEEEEcCCCCcHHHHhcc
Q 047923 170 VYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~ 189 (190)
-.++.++|.+|+||||++..
T Consensus 100 p~vIlivG~~G~GKTTt~~k 119 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAK 119 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHH
Confidence 67999999999999998753
No 52
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.52 E-value=0.0018 Score=52.14 Aligned_cols=43 Identities=16% Similarity=0.251 Sum_probs=32.6
Q ss_pred cccccccchhHHHHHHHhhhcCCCeEEEEEEcCCCCcHHHHhccC
Q 047923 146 ENQLVGRESRVEIIESLLAAESKDVYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 146 ~~~~vG~d~~~~~~~~~l~~~~~~~~vi~i~G~gGiGKTTla~~v 190 (190)
...++|.+.-++.+...+..+ .+..+.++|..|.||||+|+++
T Consensus 24 ~~~~~g~~~~~~~L~~~i~~g--~~~~~ll~Gp~G~GKTtla~~l 66 (340)
T 1sxj_C 24 LDEVYGQNEVITTVRKFVDEG--KLPHLLFYGPPGTGKTSTIVAL 66 (340)
T ss_dssp GGGCCSCHHHHHHHHHHHHTT--CCCCEEEECSSSSSHHHHHHHH
T ss_pred HHHhcCcHHHHHHHHHHHhcC--CCceEEEECCCCCCHHHHHHHH
Confidence 356789888788777777654 3333789999999999999863
No 53
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=96.47 E-value=0.0021 Score=52.37 Aligned_cols=33 Identities=30% Similarity=0.364 Sum_probs=23.9
Q ss_pred HHHHHHhhhcCCCeEEEEEEcCCCCcHHHHhcc
Q 047923 157 EIIESLLAAESKDVYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 157 ~~~~~~l~~~~~~~~vi~i~G~gGiGKTTla~~ 189 (190)
..+...+........+|+|.|.+|+|||||+..
T Consensus 66 ~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~ 98 (355)
T 3p32_A 66 QQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEA 98 (355)
T ss_dssp HHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHH
T ss_pred HHHHHHhHhhcCCceEEEEECCCCCCHHHHHHH
Confidence 334444443445678999999999999999864
No 54
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.45 E-value=0.009 Score=50.13 Aligned_cols=20 Identities=40% Similarity=0.494 Sum_probs=17.9
Q ss_pred eEEEEEEcCCCCcHHHHhcc
Q 047923 170 VYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~ 189 (190)
-+++.++|.+|+||||++..
T Consensus 97 ~~vI~lvG~~GsGKTTt~~k 116 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGK 116 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 58999999999999999753
No 55
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=96.44 E-value=0.0012 Score=55.41 Aligned_cols=47 Identities=19% Similarity=0.202 Sum_probs=34.7
Q ss_pred cccccccccchhHHHHHHHhhh----------cCCCeEEEEEEcCCCCcHHHHhccC
Q 047923 144 DKENQLVGRESRVEIIESLLAA----------ESKDVYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 144 ~~~~~~vG~d~~~~~~~~~l~~----------~~~~~~vi~i~G~gGiGKTTla~~v 190 (190)
....+++|.+..++.+.+.+.. .....+-+-|+|.+|+|||+||+++
T Consensus 131 ~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~ai 187 (444)
T 2zan_A 131 VKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAV 187 (444)
T ss_dssp CCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHH
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHH
Confidence 3446799999999888876631 0112356779999999999999864
No 56
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=96.41 E-value=0.0015 Score=52.47 Aligned_cols=21 Identities=29% Similarity=0.651 Sum_probs=18.2
Q ss_pred CCeEEEEEEcCCCCcHHHHhc
Q 047923 168 KDVYILGIWGVGSIGKTTIAR 188 (190)
Q Consensus 168 ~~~~vi~i~G~gGiGKTTla~ 188 (190)
++.++|+|.|=||+||||.|-
T Consensus 46 ~~aKVIAIaGKGGVGKTTtav 66 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSS 66 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHH
T ss_pred CCceEEEEECCCccCHHHHHH
Confidence 358999999999999999873
No 57
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=96.38 E-value=0.0019 Score=55.06 Aligned_cols=45 Identities=24% Similarity=0.287 Sum_probs=34.5
Q ss_pred cccccccchhHHHHHHHhhhc-----------CCCeEEEEEEcCCCCcHHHHhccC
Q 047923 146 ENQLVGRESRVEIIESLLAAE-----------SKDVYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 146 ~~~~vG~d~~~~~~~~~l~~~-----------~~~~~vi~i~G~gGiGKTTla~~v 190 (190)
..+++|.+..++.+.+++... ...-+-+-|+|.+|.|||+||+++
T Consensus 203 ~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lArai 258 (489)
T 3hu3_A 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAV 258 (489)
T ss_dssp GGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHH
Confidence 356899999999998877532 222345679999999999999864
No 58
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=96.36 E-value=0.0092 Score=50.05 Aligned_cols=21 Identities=24% Similarity=0.215 Sum_probs=18.2
Q ss_pred CeEEEEEEcCCCCcHHHHhcc
Q 047923 169 DVYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 169 ~~~vi~i~G~gGiGKTTla~~ 189 (190)
..++|.++|.||+||||+|-.
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~ 119 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGK 119 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHH
Confidence 368999999999999999853
No 59
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.36 E-value=0.0015 Score=59.06 Aligned_cols=45 Identities=24% Similarity=0.277 Sum_probs=34.8
Q ss_pred cccccccchhHHHHHHHhhh-----------cCCCeEEEEEEcCCCCcHHHHhccC
Q 047923 146 ENQLVGRESRVEIIESLLAA-----------ESKDVYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 146 ~~~~vG~d~~~~~~~~~l~~-----------~~~~~~vi~i~G~gGiGKTTla~~v 190 (190)
..+++|.+..++.+.+++.. .-..-+-+.|+|.+|.||||||+++
T Consensus 203 ~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLaral 258 (806)
T 1ypw_A 203 YDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAV 258 (806)
T ss_dssp GGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHH
T ss_pred HHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHH
Confidence 36789999999998887753 1122346889999999999999864
No 60
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.35 E-value=0.0018 Score=57.95 Aligned_cols=42 Identities=24% Similarity=0.378 Sum_probs=33.4
Q ss_pred ccccccchhHHHHHHHhhhcCCCeEEEEEEcCCCCcHHHHhccC
Q 047923 147 NQLVGRESRVEIIESLLAAESKDVYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 147 ~~~vG~d~~~~~~~~~l~~~~~~~~vi~i~G~gGiGKTTla~~v 190 (190)
..++|++..++.+...|..... - -+-++|.+|+||||+|+++
T Consensus 180 d~iiG~~~~i~~l~~~l~~~~~-~-~vLL~G~pGtGKT~la~~l 221 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSRRTK-N-NPVLIGEPGVGKTAIAEGL 221 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHCSSS-C-EEEEESCTTTTTHHHHHHH
T ss_pred CCccCchHHHHHHHHHHhCCCC-C-CeEEECCCCCCHHHHHHHH
Confidence 5689999999999988865321 2 2458999999999999863
No 61
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.34 E-value=0.013 Score=47.86 Aligned_cols=20 Identities=35% Similarity=0.277 Sum_probs=18.0
Q ss_pred eEEEEEEcCCCCcHHHHhcc
Q 047923 170 VYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~ 189 (190)
-.+++|+|..|.|||||++.
T Consensus 157 g~vi~lvG~nGsGKTTll~~ 176 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGK 176 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHH
Confidence 46999999999999999875
No 62
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=96.34 E-value=0.0021 Score=54.11 Aligned_cols=46 Identities=24% Similarity=0.212 Sum_probs=32.8
Q ss_pred ccccccccchhHHHHHHHhhh---cCCCeEEEEEEcCCCCcHHHHhccC
Q 047923 145 KENQLVGRESRVEIIESLLAA---ESKDVYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 145 ~~~~~vG~d~~~~~~~~~l~~---~~~~~~vi~i~G~gGiGKTTla~~v 190 (190)
...+++|.+..++.+..++.. +...-+-+-++|.+|.||||||+++
T Consensus 35 ~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~al 83 (456)
T 2c9o_A 35 AASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAI 83 (456)
T ss_dssp EETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHH
T ss_pred chhhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHH
Confidence 346899999888876655442 2212244668999999999999863
No 63
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.27 E-value=0.0025 Score=50.82 Aligned_cols=45 Identities=20% Similarity=0.080 Sum_probs=34.6
Q ss_pred ccccccccchhHHHHHHHhhhcCCCeEEEEEEcCCCCcHHHHhccC
Q 047923 145 KENQLVGRESRVEIIESLLAAESKDVYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 145 ~~~~~vG~d~~~~~~~~~l~~~~~~~~vi~i~G~gGiGKTTla~~v 190 (190)
...+++|.+..++.+.+++..+.. -.++=+.|.+|+||||+|+++
T Consensus 24 ~~~~ivg~~~~~~~l~~~l~~~~~-~~~~L~~G~~G~GKT~la~~l 68 (324)
T 3u61_B 24 TIDECILPAFDKETFKSITSKGKI-PHIILHSPSPGTGKTTVAKAL 68 (324)
T ss_dssp STTTSCCCHHHHHHHHHHHHTTCC-CSEEEECSSTTSSHHHHHHHH
T ss_pred CHHHHhCcHHHHHHHHHHHHcCCC-CeEEEeeCcCCCCHHHHHHHH
Confidence 346799999999999988875421 245567788999999999863
No 64
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.27 E-value=0.0015 Score=59.35 Aligned_cols=42 Identities=19% Similarity=0.329 Sum_probs=33.6
Q ss_pred cccccccchhHHHHHHHhhhcCCCeEEEEEEcCCCCcHHHHhcc
Q 047923 146 ENQLVGRESRVEIIESLLAAESKDVYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 146 ~~~~vG~d~~~~~~~~~l~~~~~~~~vi~i~G~gGiGKTTla~~ 189 (190)
...++|++..++.+...|.... .+-+-++|-+|+||||||+.
T Consensus 169 ld~viGr~~~i~~l~~~l~~~~--~~~vlL~G~pG~GKT~la~~ 210 (854)
T 1qvr_A 169 LDPVIGRDEEIRRVIQILLRRT--KNNPVLIGEPGVGKTAIVEG 210 (854)
T ss_dssp SCCCCSCHHHHHHHHHHHHCSS--CCCCEEEECTTSCHHHHHHH
T ss_pred CcccCCcHHHHHHHHHHHhcCC--CCceEEEcCCCCCHHHHHHH
Confidence 3568999999999998886532 23356899999999999985
No 65
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.25 E-value=0.0055 Score=49.43 Aligned_cols=21 Identities=43% Similarity=0.675 Sum_probs=19.0
Q ss_pred CeEEEEEEcCCCCcHHHHhcc
Q 047923 169 DVYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 169 ~~~vi~i~G~gGiGKTTla~~ 189 (190)
...++||.|..|.||||||+.
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~ 111 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRV 111 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHH
Confidence 467999999999999999975
No 66
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=96.22 E-value=0.0039 Score=53.29 Aligned_cols=40 Identities=20% Similarity=0.161 Sum_probs=31.3
Q ss_pred ccccccchhHHHHHHHhhhcCCCeEEEEEEcCCCCcHHHHhccC
Q 047923 147 NQLVGRESRVEIIESLLAAESKDVYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 147 ~~~vG~d~~~~~~~~~l~~~~~~~~vi~i~G~gGiGKTTla~~v 190 (190)
..++|.+..++.+...+..+. -+-++|.+|+|||+||+++
T Consensus 22 ~~ivGq~~~i~~l~~al~~~~----~VLL~GpPGtGKT~LAraL 61 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSGE----SVFLLGPPGIAKSLIARRL 61 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHTC----EEEEECCSSSSHHHHHHHG
T ss_pred hhhHHHHHHHHHHHHHHhcCC----eeEeecCchHHHHHHHHHH
Confidence 468999988887776665432 3568999999999999864
No 67
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.21 E-value=0.0012 Score=47.24 Aligned_cols=21 Identities=24% Similarity=0.453 Sum_probs=18.1
Q ss_pred eEEEEEEcCCCCcHHHHhccC
Q 047923 170 VYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~v 190 (190)
-..++|+|..|.|||||++++
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i 56 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAW 56 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHH
Confidence 457899999999999999863
No 68
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.11 E-value=0.0029 Score=56.51 Aligned_cols=42 Identities=29% Similarity=0.349 Sum_probs=33.4
Q ss_pred cccccccchhHHHHHHHhhhcCCCeEEEEEEcCCCCcHHHHhcc
Q 047923 146 ENQLVGRESRVEIIESLLAAESKDVYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 146 ~~~~vG~d~~~~~~~~~l~~~~~~~~vi~i~G~gGiGKTTla~~ 189 (190)
...++|++..++.+.+.|.... -.-+-++|-+|+||||||++
T Consensus 185 ~d~~iGr~~~i~~l~~~l~~~~--~~~vlL~G~~GtGKT~la~~ 226 (758)
T 1r6b_X 185 IDPLIGREKELERAIQVLCRRR--KNNPLLVGESGVGKTAIAEG 226 (758)
T ss_dssp SCCCCSCHHHHHHHHHHHTSSS--SCEEEEECCTTSSHHHHHHH
T ss_pred CCCccCCHHHHHHHHHHHhccC--CCCeEEEcCCCCCHHHHHHH
Confidence 3568999999999988886542 22346899999999999985
No 69
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.05 E-value=0.0022 Score=51.53 Aligned_cols=22 Identities=36% Similarity=0.564 Sum_probs=19.4
Q ss_pred CeEEEEEEcCCCCcHHHHhccC
Q 047923 169 DVYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 169 ~~~vi~i~G~gGiGKTTla~~v 190 (190)
.-.++||.|..|.|||||++.+
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L 110 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVL 110 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHH
Confidence 4679999999999999999853
No 70
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.03 E-value=0.0022 Score=50.59 Aligned_cols=21 Identities=33% Similarity=0.803 Sum_probs=18.9
Q ss_pred CeEEEEEEcCCCCcHHHHhcc
Q 047923 169 DVYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 169 ~~~vi~i~G~gGiGKTTla~~ 189 (190)
...+|+|.|+.|.||||+|+.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~ 94 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQR 94 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHH
Confidence 467899999999999999985
No 71
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=95.95 E-value=0.0022 Score=50.46 Aligned_cols=18 Identities=33% Similarity=0.338 Sum_probs=16.6
Q ss_pred EEEEcCCCCcHHHHhccC
Q 047923 173 LGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 173 i~i~G~gGiGKTTla~~v 190 (190)
+.++|.+|.||||||+++
T Consensus 47 vlL~Gp~GtGKTtLakal 64 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAV 64 (274)
T ss_dssp EEEESSTTSCHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHH
Confidence 899999999999999864
No 72
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.89 E-value=0.0056 Score=51.31 Aligned_cols=44 Identities=16% Similarity=0.165 Sum_probs=32.6
Q ss_pred ccccccchhHHHHHHHhhh-----------cCCCeEEEEEEcCCCCcHHHHhccC
Q 047923 147 NQLVGRESRVEIIESLLAA-----------ESKDVYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 147 ~~~vG~d~~~~~~~~~l~~-----------~~~~~~vi~i~G~gGiGKTTla~~v 190 (190)
.++.|.+..++++.+.+.. +-..-+=+=++|.+|.|||+||+++
T Consensus 172 ~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAi 226 (428)
T 4b4t_K 172 ADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAV 226 (428)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHH
Confidence 5678999988888776542 1122345668999999999999974
No 73
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=95.88 E-value=0.0045 Score=50.51 Aligned_cols=20 Identities=25% Similarity=0.202 Sum_probs=16.8
Q ss_pred EEEEEEcCCCCcHHHHhccC
Q 047923 171 YILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~~v 190 (190)
..+-++|.+|+||||||+++
T Consensus 73 ~~ill~Gp~GtGKT~la~~l 92 (376)
T 1um8_A 73 SNILLIGPTGSGKTLMAQTL 92 (376)
T ss_dssp CCEEEECCTTSSHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHH
Confidence 34668999999999999863
No 74
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.87 E-value=0.0069 Score=50.80 Aligned_cols=20 Identities=30% Similarity=0.363 Sum_probs=17.6
Q ss_pred eEEEEEEcCCCCcHHHHhcc
Q 047923 170 VYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~ 189 (190)
.++|.|+|.+|+||||+|..
T Consensus 99 ~~vI~ivG~~GvGKTTla~~ 118 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAK 118 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 46899999999999999864
No 75
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=95.86 E-value=0.0025 Score=49.07 Aligned_cols=18 Identities=39% Similarity=0.490 Sum_probs=16.4
Q ss_pred EEEEcCCCCcHHHHhccC
Q 047923 173 LGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 173 i~i~G~gGiGKTTla~~v 190 (190)
+.|+|..|.||||||+++
T Consensus 52 ~ll~G~~G~GKTtl~~~i 69 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAV 69 (254)
T ss_dssp EEEECCTTSSHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 889999999999999863
No 76
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.85 E-value=0.006 Score=51.26 Aligned_cols=44 Identities=18% Similarity=0.246 Sum_probs=32.7
Q ss_pred ccccccchhHHHHHHHhhh-----------cCCCeEEEEEEcCCCCcHHHHhccC
Q 047923 147 NQLVGRESRVEIIESLLAA-----------ESKDVYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 147 ~~~vG~d~~~~~~~~~l~~-----------~~~~~~vi~i~G~gGiGKTTla~~v 190 (190)
.++.|.+..++++.+.+.. +-...+=+=++|.+|.|||+||++|
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAi 235 (437)
T 4b4t_L 181 DGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAV 235 (437)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHH
T ss_pred hHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHH
Confidence 5677999988888776542 1112355668999999999999974
No 77
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=95.79 E-value=0.0076 Score=48.79 Aligned_cols=27 Identities=26% Similarity=0.368 Sum_probs=21.3
Q ss_pred hhhcCCCeEEEEEEcCCCCcHHHHhcc
Q 047923 163 LAAESKDVYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 163 l~~~~~~~~vi~i~G~gGiGKTTla~~ 189 (190)
+........+++|.|.+|.|||||+..
T Consensus 49 l~~~~~~~~~i~i~G~~g~GKSTl~~~ 75 (341)
T 2p67_A 49 IMPYCGNTLRLGVTGTPGAGKSTFLEA 75 (341)
T ss_dssp HGGGCSCSEEEEEEECTTSCHHHHHHH
T ss_pred CCcccCCCEEEEEEcCCCCCHHHHHHH
Confidence 333344678999999999999999864
No 78
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.77 E-value=0.0025 Score=49.57 Aligned_cols=19 Identities=26% Similarity=0.335 Sum_probs=17.0
Q ss_pred EEEEEEcCCCCcHHHHhcc
Q 047923 171 YILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~~ 189 (190)
..|.|.|+.|.||||+++.
T Consensus 49 ~~i~l~G~~GsGKSTl~~~ 67 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKI 67 (250)
T ss_dssp CCEEEECSTTSCHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHH
Confidence 3689999999999999985
No 79
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=95.77 E-value=0.0028 Score=48.82 Aligned_cols=18 Identities=33% Similarity=0.350 Sum_probs=16.2
Q ss_pred EEEEcCCCCcHHHHhccC
Q 047923 173 LGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 173 i~i~G~gGiGKTTla~~v 190 (190)
+.|+|.+|.||||||+++
T Consensus 48 vll~G~~GtGKT~la~~l 65 (257)
T 1lv7_A 48 VLMVGPPGTGKTLLAKAI 65 (257)
T ss_dssp EEEECCTTSCHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHH
Confidence 679999999999999864
No 80
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=95.75 E-value=0.0039 Score=53.27 Aligned_cols=46 Identities=22% Similarity=0.220 Sum_probs=32.0
Q ss_pred ccccccccchhHHHHHHHhhhc-C--------CC-eEEEEEEcCCCCcHHHHhccC
Q 047923 145 KENQLVGRESRVEIIESLLAAE-S--------KD-VYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 145 ~~~~~vG~d~~~~~~~~~l~~~-~--------~~-~~vi~i~G~gGiGKTTla~~v 190 (190)
...+++|.+..++++.++...- . -. -+-+.|+|.+|.||||||+++
T Consensus 29 ~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraI 84 (499)
T 2dhr_A 29 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAV 84 (499)
T ss_dssp CTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHH
T ss_pred CHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHH
Confidence 3467889988877777654321 0 01 123789999999999999864
No 81
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=95.72 E-value=0.0035 Score=50.03 Aligned_cols=21 Identities=43% Similarity=0.583 Sum_probs=18.9
Q ss_pred CeEEEEEEcCCCCcHHHHhcc
Q 047923 169 DVYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 169 ~~~vi~i~G~gGiGKTTla~~ 189 (190)
.-.++||.|..|.|||||++.
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~ 99 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARV 99 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHH
Confidence 467999999999999999985
No 82
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.68 E-value=0.0088 Score=43.09 Aligned_cols=22 Identities=27% Similarity=0.348 Sum_probs=18.9
Q ss_pred CCeEEEEEEcCCCCcHHHHhcc
Q 047923 168 KDVYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 168 ~~~~vi~i~G~gGiGKTTla~~ 189 (190)
..-.+++|.|..|.|||||.+.
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~ 52 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRG 52 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHH
Confidence 3456899999999999999885
No 83
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=95.66 E-value=0.011 Score=47.86 Aligned_cols=31 Identities=26% Similarity=0.371 Sum_probs=23.1
Q ss_pred HHHHhhhcCCCeEEEEEEcCCCCcHHHHhcc
Q 047923 159 IESLLAAESKDVYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 159 ~~~~l~~~~~~~~vi~i~G~gGiGKTTla~~ 189 (190)
+.+-+...-..-.+++|.|.+|.|||||.+.
T Consensus 44 ~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~ 74 (337)
T 2qm8_A 44 LIDAVLPQTGRAIRVGITGVPGVGKSTTIDA 74 (337)
T ss_dssp HHHHHGGGCCCSEEEEEECCTTSCHHHHHHH
T ss_pred HHHhCCcccCCCeEEEEECCCCCCHHHHHHH
Confidence 3333444444578999999999999999864
No 84
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=95.62 E-value=0.0038 Score=50.05 Aligned_cols=45 Identities=20% Similarity=0.125 Sum_probs=28.8
Q ss_pred cccccccccchhHHHHHHHhhhcCCCeEEEEEEcCCCCcHHHHhccC
Q 047923 144 DKENQLVGRESRVEIIESLLAAESKDVYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 144 ~~~~~~vG~d~~~~~~~~~l~~~~~~~~vi~i~G~gGiGKTTla~~v 190 (190)
....+++|.+..++.+...+.... ..-+=|+|-+|+|||+||+++
T Consensus 21 ~~f~~i~G~~~~~~~l~~~~~~~~--~~~vLl~G~~GtGKT~la~~l 65 (350)
T 1g8p_A 21 FPFSAIVGQEDMKLALLLTAVDPG--IGGVLVFGDRGTGKSTAVRAL 65 (350)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHCGG--GCCEEEECCGGGCTTHHHHHH
T ss_pred CCchhccChHHHHHHHHHHhhCCC--CceEEEECCCCccHHHHHHHH
Confidence 344678999875554432222111 112668999999999999863
No 85
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=95.61 E-value=0.0054 Score=53.51 Aligned_cols=40 Identities=25% Similarity=0.408 Sum_probs=32.1
Q ss_pred ccccccchhHHHHHHHhhhcCCCeEEEEEEcCCCCcHHHHhccC
Q 047923 147 NQLVGRESRVEIIESLLAAESKDVYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 147 ~~~vG~d~~~~~~~~~l~~~~~~~~vi~i~G~gGiGKTTla~~v 190 (190)
..++|.+.-++.+...+..+ ..+.|+|..|.||||||+++
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g----~~vll~Gp~GtGKTtlar~i 80 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQK----RHVLLIGEPGTGKSMLGQAM 80 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTT----CCEEEECCTTSSHHHHHHHH
T ss_pred ceEECchhhHhhccccccCC----CEEEEEeCCCCCHHHHHHHH
Confidence 56889988887777666554 36889999999999999863
No 86
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.60 E-value=0.0063 Score=50.57 Aligned_cols=44 Identities=20% Similarity=0.258 Sum_probs=32.2
Q ss_pred ccccccchhHHHHHHHhhh-----------cCCCeEEEEEEcCCCCcHHHHhccC
Q 047923 147 NQLVGRESRVEIIESLLAA-----------ESKDVYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 147 ~~~vG~d~~~~~~~~~l~~-----------~~~~~~vi~i~G~gGiGKTTla~~v 190 (190)
+++-|.+..++++.+.+.. +-..-+=+=++|.+|.|||+||+++
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAi 202 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAV 202 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHH
Confidence 5677999999888776542 1112344568999999999999974
No 87
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.59 E-value=0.008 Score=50.43 Aligned_cols=45 Identities=20% Similarity=0.215 Sum_probs=32.9
Q ss_pred cccccccchhHHHHHHHhhh-----------cCCCeEEEEEEcCCCCcHHHHhccC
Q 047923 146 ENQLVGRESRVEIIESLLAA-----------ESKDVYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 146 ~~~~vG~d~~~~~~~~~l~~-----------~~~~~~vi~i~G~gGiGKTTla~~v 190 (190)
..++.|.+..++++.+.+.. +-..-+=+=+||.+|.|||+||+++
T Consensus 180 ~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAi 235 (434)
T 4b4t_M 180 YSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARAC 235 (434)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHH
T ss_pred hHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHH
Confidence 35778999999888775432 1112455668999999999999974
No 88
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.59 E-value=0.0058 Score=51.27 Aligned_cols=21 Identities=29% Similarity=0.294 Sum_probs=18.3
Q ss_pred eEEEEEEcCCCCcHHHHhccC
Q 047923 170 VYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~v 190 (190)
...+-|+|.+|+||||||+++
T Consensus 130 ~~~lll~Gp~G~GKTtLa~ai 150 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSI 150 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHH
Confidence 566889999999999999863
No 89
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.53 E-value=0.0042 Score=49.45 Aligned_cols=20 Identities=25% Similarity=0.305 Sum_probs=17.7
Q ss_pred eEEEEEEcCCCCcHHHHhcc
Q 047923 170 VYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~ 189 (190)
-.+++++|.+|.||||++..
T Consensus 105 g~vi~lvG~~GsGKTTl~~~ 124 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAK 124 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHH
Confidence 46899999999999999864
No 90
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=95.50 E-value=0.004 Score=49.39 Aligned_cols=21 Identities=29% Similarity=0.254 Sum_probs=17.8
Q ss_pred eEEEEEEcCCCCcHHHHhccC
Q 047923 170 VYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~v 190 (190)
-+.+-|+|.+|.||||||+++
T Consensus 49 ~~~vLL~Gp~GtGKT~la~al 69 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLAKAI 69 (301)
T ss_dssp CSEEEEECSSSSSHHHHHHHH
T ss_pred CceEEEECCCCcCHHHHHHHH
Confidence 346789999999999999864
No 91
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=95.50 E-value=0.0086 Score=49.35 Aligned_cols=24 Identities=29% Similarity=0.113 Sum_probs=19.8
Q ss_pred cCCCeEEEEEEcCCCCcHHHHhcc
Q 047923 166 ESKDVYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 166 ~~~~~~vi~i~G~gGiGKTTla~~ 189 (190)
.-..-++++|+|..|.|||||+++
T Consensus 165 ~i~~~~~i~l~G~~GsGKSTl~~~ 188 (377)
T 1svm_A 165 NIPKKRYWLFKGPIDSGKTTLAAA 188 (377)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHH
T ss_pred ccCCCCEEEEECCCCCCHHHHHHH
Confidence 333456899999999999999985
No 92
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.45 E-value=0.0076 Score=50.92 Aligned_cols=44 Identities=20% Similarity=0.249 Sum_probs=32.4
Q ss_pred ccccccchhHHHHHHHhhh-----------cCCCeEEEEEEcCCCCcHHHHhccC
Q 047923 147 NQLVGRESRVEIIESLLAA-----------ESKDVYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 147 ~~~vG~d~~~~~~~~~l~~-----------~~~~~~vi~i~G~gGiGKTTla~~v 190 (190)
.++.|.+..++++.+.+.. +-...+=+=++|.+|.|||+||++|
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAi 263 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAV 263 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHH
Confidence 4678999999988775432 1122445568999999999999974
No 93
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=95.41 E-value=0.005 Score=49.22 Aligned_cols=20 Identities=30% Similarity=0.371 Sum_probs=17.9
Q ss_pred eEEEEEEcCCCCcHHHHhcc
Q 047923 170 VYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~ 189 (190)
-.+++|+|.+|.|||||++.
T Consensus 102 g~vi~lvG~nGsGKTTll~~ 121 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAK 121 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHH
Confidence 56899999999999999875
No 94
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=95.29 E-value=0.0088 Score=47.34 Aligned_cols=20 Identities=30% Similarity=0.682 Sum_probs=17.9
Q ss_pred CeEEEEEEcCCCCcHHHHhc
Q 047923 169 DVYILGIWGVGSIGKTTIAR 188 (190)
Q Consensus 169 ~~~vi~i~G~gGiGKTTla~ 188 (190)
..++|.|+|-||+||||+|-
T Consensus 40 ~~~vI~v~~KGGvGKTT~a~ 59 (307)
T 3end_A 40 GAKVFAVYGKGGIGKSTTSS 59 (307)
T ss_dssp CCEEEEEECSTTSSHHHHHH
T ss_pred CceEEEEECCCCccHHHHHH
Confidence 57889999999999999985
No 95
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=95.14 E-value=0.012 Score=50.77 Aligned_cols=44 Identities=32% Similarity=0.305 Sum_probs=31.1
Q ss_pred ccccccchhHHHHHHHhhhc----CCCeEEEEEEcCCCCcHHHHhccC
Q 047923 147 NQLVGRESRVEIIESLLAAE----SKDVYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 147 ~~~vG~d~~~~~~~~~l~~~----~~~~~vi~i~G~gGiGKTTla~~v 190 (190)
.+++|.+.-.+.+.+.+... ...-..+.++|.+|+||||||+++
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~i 128 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSI 128 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHH
Confidence 34788887777765543321 113457899999999999999863
No 96
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=95.11 E-value=0.012 Score=52.71 Aligned_cols=44 Identities=20% Similarity=0.354 Sum_probs=33.5
Q ss_pred ccccccchhHHHHHHHhhhcC-------CCeEEEEEEcCCCCcHHHHhccC
Q 047923 147 NQLVGRESRVEIIESLLAAES-------KDVYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 147 ~~~vG~d~~~~~~~~~l~~~~-------~~~~vi~i~G~gGiGKTTla~~v 190 (190)
..++|.+..++.+...+.... .....+-++|.+|+|||+||+++
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~al 541 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARAL 541 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHH
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHH
Confidence 568899998888877765421 11346789999999999999864
No 97
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=95.09 E-value=0.014 Score=52.58 Aligned_cols=44 Identities=25% Similarity=0.336 Sum_probs=32.7
Q ss_pred ccccccchhHHHHHHHhhh---c-----C---CCeEEEEEEcCCCCcHHHHhccC
Q 047923 147 NQLVGRESRVEIIESLLAA---E-----S---KDVYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 147 ~~~vG~d~~~~~~~~~l~~---~-----~---~~~~vi~i~G~gGiGKTTla~~v 190 (190)
+++.|.+..++++.+++.. . . ...+-|=++|.+|.|||+||++|
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LArai 258 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAV 258 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHH
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHH
Confidence 5678999999888876542 1 1 12355678999999999999974
No 98
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=95.04 E-value=0.0077 Score=47.13 Aligned_cols=20 Identities=25% Similarity=0.327 Sum_probs=17.7
Q ss_pred eEEEEEEcCCCCcHHHHhcc
Q 047923 170 VYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~ 189 (190)
=.+++|+|..|.|||||.+.
T Consensus 50 Gei~~liG~NGsGKSTLlk~ 69 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRC 69 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHH
T ss_pred CCEEEEEcCCCCcHHHHHHH
Confidence 35799999999999999875
No 99
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.03 E-value=0.0085 Score=47.58 Aligned_cols=20 Identities=30% Similarity=0.257 Sum_probs=17.8
Q ss_pred eEEEEEEcCCCCcHHHHhcc
Q 047923 170 VYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~ 189 (190)
-.+++++|.+|.||||++..
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~ 117 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAK 117 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 47899999999999999864
No 100
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.93 E-value=0.0086 Score=46.64 Aligned_cols=19 Identities=42% Similarity=0.573 Sum_probs=17.2
Q ss_pred EEEEEEcCCCCcHHHHhcc
Q 047923 171 YILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~~ 189 (190)
.+++|.|..|.|||||.+.
T Consensus 42 ei~~l~G~NGsGKSTLlk~ 60 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRI 60 (256)
T ss_dssp CEEEEECCTTSSHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHH
Confidence 4799999999999999875
No 101
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=94.93 E-value=0.0076 Score=48.37 Aligned_cols=20 Identities=25% Similarity=0.318 Sum_probs=17.2
Q ss_pred EEEEEEcCCCCcHHHHhccC
Q 047923 171 YILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~~v 190 (190)
+-+-++|.+|.|||+||+++
T Consensus 46 ~~iLL~GppGtGKT~la~al 65 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAV 65 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHH
T ss_pred ceEEEECCCCccHHHHHHHH
Confidence 45778999999999999864
No 102
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=94.92 E-value=0.015 Score=49.68 Aligned_cols=21 Identities=24% Similarity=0.295 Sum_probs=17.4
Q ss_pred CeEEEEEEcCCCCcHHHHhcc
Q 047923 169 DVYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 169 ~~~vi~i~G~gGiGKTTla~~ 189 (190)
..++|.|+|.+|+||||++..
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~k 120 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSK 120 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHH
Confidence 367999999999999999864
No 103
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=94.91 E-value=0.0087 Score=46.83 Aligned_cols=19 Identities=26% Similarity=0.414 Sum_probs=17.3
Q ss_pred EEEEEEcCCCCcHHHHhcc
Q 047923 171 YILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~~ 189 (190)
.+++|+|..|.|||||.+.
T Consensus 47 e~~~l~G~NGsGKSTLlk~ 65 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSAT 65 (267)
T ss_dssp CEEEEECCTTSSHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHH
Confidence 5799999999999999875
No 104
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=94.90 E-value=0.009 Score=46.58 Aligned_cols=19 Identities=32% Similarity=0.361 Sum_probs=17.3
Q ss_pred EEEEEEcCCCCcHHHHhcc
Q 047923 171 YILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~~ 189 (190)
.+++|+|..|.|||||.+.
T Consensus 47 e~~~i~G~nGsGKSTLl~~ 65 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKL 65 (260)
T ss_dssp CEEEEECSTTSSHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHH
Confidence 4799999999999999875
No 105
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=94.83 E-value=0.0095 Score=46.74 Aligned_cols=20 Identities=25% Similarity=0.308 Sum_probs=17.7
Q ss_pred eEEEEEEcCCCCcHHHHhcc
Q 047923 170 VYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~ 189 (190)
=.+++|+|..|.|||||.+.
T Consensus 45 Ge~~~i~G~nGsGKSTLlk~ 64 (271)
T 2ixe_A 45 GKVTALVGPNGSGKSTVAAL 64 (271)
T ss_dssp TCEEEEECSTTSSHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHH
Confidence 35799999999999999875
No 106
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=94.83 E-value=0.005 Score=47.63 Aligned_cols=18 Identities=33% Similarity=0.366 Sum_probs=15.7
Q ss_pred EEEEcCCCCcHHHHhccC
Q 047923 173 LGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 173 i~i~G~gGiGKTTla~~v 190 (190)
+-|+|.+|+||||||+++
T Consensus 47 vll~G~~GtGKT~la~~l 64 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAV 64 (268)
T ss_dssp CCCBCSSCSSHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHH
Confidence 558999999999999864
No 107
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.83 E-value=0.019 Score=48.08 Aligned_cols=44 Identities=25% Similarity=0.304 Sum_probs=32.3
Q ss_pred ccccccchhHHHHHHHhhh---c--------CCCeEEEEEEcCCCCcHHHHhccC
Q 047923 147 NQLVGRESRVEIIESLLAA---E--------SKDVYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 147 ~~~vG~d~~~~~~~~~l~~---~--------~~~~~vi~i~G~gGiGKTTla~~v 190 (190)
.++-|.+..++++.+.+.. . -..-+=+=++|.+|.|||.||+++
T Consensus 182 ~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAi 236 (437)
T 4b4t_I 182 SDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAV 236 (437)
T ss_dssp GGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHH
T ss_pred eecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHH
Confidence 4677899988888776542 1 112345668999999999999874
No 108
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=94.80 E-value=0.0096 Score=46.95 Aligned_cols=19 Identities=26% Similarity=0.371 Sum_probs=17.2
Q ss_pred EEEEEEcCCCCcHHHHhcc
Q 047923 171 YILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~~ 189 (190)
.+++|+|..|.|||||.+.
T Consensus 48 e~~~liG~NGsGKSTLlk~ 66 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNI 66 (279)
T ss_dssp CEEEEECCTTSSHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHH
Confidence 4799999999999999875
No 109
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=94.75 E-value=0.017 Score=46.10 Aligned_cols=21 Identities=29% Similarity=0.224 Sum_probs=17.6
Q ss_pred eEEEEEEcCCCCcHHHHhccC
Q 047923 170 VYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~v 190 (190)
-.-+-|||..|+|||+||+++
T Consensus 152 ~~~lll~G~~GtGKT~La~ai 172 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAM 172 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHH
Confidence 356779999999999999763
No 110
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=94.68 E-value=0.012 Score=47.53 Aligned_cols=19 Identities=32% Similarity=0.427 Sum_probs=16.4
Q ss_pred EEEEEEcCCCCcHHHHhcc
Q 047923 171 YILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~~ 189 (190)
+++-|+|.+|+||||||.+
T Consensus 124 sviLI~GpPGsGKTtLAlq 142 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHA 142 (331)
T ss_dssp EEEEEECSCSSSHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHH
Confidence 4567999999999999975
No 111
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=94.60 E-value=0.015 Score=47.33 Aligned_cols=31 Identities=26% Similarity=0.377 Sum_probs=22.4
Q ss_pred HHHHhhhcCCCeEEEEEEcCCCCcHHHHhcc
Q 047923 159 IESLLAAESKDVYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 159 ~~~~l~~~~~~~~vi~i~G~gGiGKTTla~~ 189 (190)
+..+|..+-..-.++.|+|..|.|||||+..
T Consensus 120 LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~ 150 (349)
T 1pzn_A 120 LDKLLGGGIETQAITEVFGEFGSGKTQLAHT 150 (349)
T ss_dssp HHHHHTSSEESSEEEEEEESTTSSHHHHHHH
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHH
Confidence 3345543222357999999999999999874
No 112
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=94.59 E-value=0.015 Score=51.89 Aligned_cols=44 Identities=16% Similarity=0.213 Sum_probs=32.8
Q ss_pred ccccccchhHHHHHHHhhhcC------C-CeEEEEEEcCCCCcHHHHhccC
Q 047923 147 NQLVGRESRVEIIESLLAAES------K-DVYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 147 ~~~vG~d~~~~~~~~~l~~~~------~-~~~vi~i~G~gGiGKTTla~~v 190 (190)
..++|.+..++.+...+.... + ....+-++|.+|+|||+||+++
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~l 508 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQL 508 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHH
Confidence 468899988888877665321 1 2446789999999999999863
No 113
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=94.57 E-value=0.012 Score=47.15 Aligned_cols=23 Identities=17% Similarity=0.224 Sum_probs=19.1
Q ss_pred CCeEEEEEEcCCCCcHHHHhccC
Q 047923 168 KDVYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 168 ~~~~vi~i~G~gGiGKTTla~~v 190 (190)
..-.+++|+|..|.|||||++.+
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL 146 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSL 146 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHH
Confidence 34467999999999999999753
No 114
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=94.57 E-value=0.011 Score=46.39 Aligned_cols=19 Identities=37% Similarity=0.408 Sum_probs=16.0
Q ss_pred EEEEEcCCCCcHHHHhccC
Q 047923 172 ILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 172 vi~i~G~gGiGKTTla~~v 190 (190)
-+-++|.+|+||||||+++
T Consensus 52 ~vll~G~~GtGKT~la~~l 70 (310)
T 1ofh_A 52 NILMIGPTGVGKTEIARRL 70 (310)
T ss_dssp CEEEECCTTSSHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHH
Confidence 3558999999999999863
No 115
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=94.56 E-value=0.43 Score=37.37 Aligned_cols=29 Identities=10% Similarity=0.093 Sum_probs=23.3
Q ss_pred chHHHHHHhhcccceEEEecCCCcCchhh
Q 047923 19 ISESIAYAIESPAISVIIFSEGYPFSRWC 47 (190)
Q Consensus 19 ~~~~l~~ai~~s~~~ivv~S~~y~~S~wc 47 (190)
...++.+.++++++.+.|+.-.-..+..|
T Consensus 13 a~~~~~~~l~~aDvVl~VvDAr~p~~~~~ 41 (282)
T 1puj_A 13 ARREVTEKLKLIDIVYELVDARIPMSSRN 41 (282)
T ss_dssp HHHHHHHHGGGCSEEEEEEETTSTTTTSC
T ss_pred HHHHHHHHHhhCCEEEEEEeCCCCCccCC
Confidence 45688899999999999998766666665
No 116
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=94.53 E-value=0.01 Score=49.33 Aligned_cols=21 Identities=19% Similarity=0.257 Sum_probs=18.6
Q ss_pred CeEEEEEEcCCCCcHHHHhcc
Q 047923 169 DVYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 169 ~~~vi~i~G~gGiGKTTla~~ 189 (190)
.-.+|-|+|++|.||||+|+.
T Consensus 257 ~~~lIil~G~pGSGKSTla~~ 277 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQE 277 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHH
Confidence 357889999999999999985
No 117
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=94.51 E-value=0.015 Score=43.95 Aligned_cols=33 Identities=18% Similarity=0.267 Sum_probs=22.9
Q ss_pred HHHHHHHhhhcCCCeEEEEEEcCCCCcHHHHhcc
Q 047923 156 VEIIESLLAAESKDVYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 156 ~~~~~~~l~~~~~~~~vi~i~G~gGiGKTTla~~ 189 (190)
+..+..++.. -.+-+.+-|+|.+|.||||+|.+
T Consensus 45 ~~~l~~~~~~-iPkkn~ili~GPPGtGKTt~a~a 77 (212)
T 1tue_A 45 LGALKSFLKG-TPKKNCLVFCGPANTGKSYFGMS 77 (212)
T ss_dssp HHHHHHHHHT-CTTCSEEEEESCGGGCHHHHHHH
T ss_pred HHHHHHHHhc-CCcccEEEEECCCCCCHHHHHHH
Confidence 5555555543 22334688999999999999864
No 118
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=94.44 E-value=0.035 Score=46.61 Aligned_cols=39 Identities=15% Similarity=0.171 Sum_probs=24.8
Q ss_pred cccchhHHHHHHHhhhcCCCeEEEEEEcCCCCcHHHHhcc
Q 047923 150 VGRESRVEIIESLLAAESKDVYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 150 vG~d~~~~~~~~~l~~~~~~~~vi~i~G~gGiGKTTla~~ 189 (190)
.|.......+..++. +-..-.++.|.|-+|+||||||..
T Consensus 184 ~~i~tG~~~LD~~~g-Gl~~G~liiI~G~pG~GKTtl~l~ 222 (454)
T 2r6a_A 184 TGIPTGFTELDRMTS-GFQRSDLIIVAARPSVGKTAFALN 222 (454)
T ss_dssp CSBCCSCHHHHHHHS-SBCTTCEEEEECCTTSCHHHHHHH
T ss_pred CCCCCCcHHHHhhcC-CCCCCCEEEEECCCCCCHHHHHHH
Confidence 344444445555542 211235788999999999999864
No 119
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=94.32 E-value=0.015 Score=48.44 Aligned_cols=32 Identities=19% Similarity=0.245 Sum_probs=22.9
Q ss_pred HHHHHhhhcCCCeEEEEEEcCCCCcHHHHhcc
Q 047923 158 IIESLLAAESKDVYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 158 ~~~~~l~~~~~~~~vi~i~G~gGiGKTTla~~ 189 (190)
.+.+.|..-.+...+++|+|..|.|||||.++
T Consensus 57 ~i~~~L~~~~~~~~~valvG~nGaGKSTLln~ 88 (413)
T 1tq4_A 57 AISDALKEIDSSVLNVAVTGETGSGKSSFINT 88 (413)
T ss_dssp HHHHHHHHHHHCCEEEEEEECTTSSHHHHHHH
T ss_pred hhhhhhhhcccCCeEEEEECCCCCcHHHHHHH
Confidence 34444443333466899999999999999875
No 120
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=94.18 E-value=0.016 Score=47.25 Aligned_cols=20 Identities=25% Similarity=0.335 Sum_probs=18.2
Q ss_pred eEEEEEEcCCCCcHHHHhcc
Q 047923 170 VYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~ 189 (190)
...++|+|..|.|||||++.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~ 189 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNK 189 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHH
Confidence 57899999999999999985
No 121
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=94.17 E-value=0.012 Score=50.95 Aligned_cols=21 Identities=33% Similarity=0.427 Sum_probs=18.5
Q ss_pred eEEEEEEcCCCCcHHHHhccC
Q 047923 170 VYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~v 190 (190)
-.+++|.|+.|.|||||++++
T Consensus 369 G~iI~LiG~sGSGKSTLar~L 389 (552)
T 3cr8_A 369 GFTVFFTGLSGAGKSTLARAL 389 (552)
T ss_dssp CEEEEEEESSCHHHHHHHHHH
T ss_pred ceEEEEECCCCChHHHHHHHH
Confidence 468999999999999999863
No 122
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=94.16 E-value=0.04 Score=44.68 Aligned_cols=41 Identities=15% Similarity=0.151 Sum_probs=27.4
Q ss_pred cccccchhHHHHHHHhhhcCCCeEEEEEEcCCCCcHHHHhcc
Q 047923 148 QLVGRESRVEIIESLLAAESKDVYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 148 ~~vG~d~~~~~~~~~l~~~~~~~~vi~i~G~gGiGKTTla~~ 189 (190)
.+.|...-...+..++. +-..-.++-|.|.+|+||||||..
T Consensus 25 ~~~gi~TG~~~LD~~~g-Gl~~G~LiiIaG~pG~GKTt~al~ 65 (338)
T 4a1f_A 25 EVTGIPTGFVQLDNYTS-GFNKGSLVIIGARPSMGKTSLMMN 65 (338)
T ss_dssp CCCSBCCSCHHHHHHHC-SBCTTCEEEEEECTTSCHHHHHHH
T ss_pred CcCcccCCChHHHHHhc-CCCCCcEEEEEeCCCCCHHHHHHH
Confidence 45566655666666663 211234677899999999999853
No 123
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=94.14 E-value=0.016 Score=42.11 Aligned_cols=21 Identities=24% Similarity=0.104 Sum_probs=17.5
Q ss_pred CeEEEEEEcCCCCcHHHHhcc
Q 047923 169 DVYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 169 ~~~vi~i~G~gGiGKTTla~~ 189 (190)
....+.++|.+|+|||||..+
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~ 67 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTL 67 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 345688999999999999864
No 124
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=94.13 E-value=0.016 Score=45.90 Aligned_cols=19 Identities=26% Similarity=0.391 Sum_probs=17.3
Q ss_pred EEEEEEcCCCCcHHHHhcc
Q 047923 171 YILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~~ 189 (190)
.+++|+|..|.|||||.+.
T Consensus 65 e~~~i~G~NGsGKSTLlk~ 83 (290)
T 2bbs_A 65 QLLAVAGSTGAGKTSLLMM 83 (290)
T ss_dssp CEEEEEESTTSSHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHH
Confidence 5799999999999999875
No 125
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=94.09 E-value=0.031 Score=43.78 Aligned_cols=33 Identities=21% Similarity=0.248 Sum_probs=23.7
Q ss_pred HHHHHhhhcCCCeEEEEEEcCCCCcHHHHhccC
Q 047923 158 IIESLLAAESKDVYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 158 ~~~~~l~~~~~~~~vi~i~G~gGiGKTTla~~v 190 (190)
.+..+|.....+...+-++|.+|.|||++|.++
T Consensus 92 ~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~al 124 (267)
T 1u0j_A 92 VFLGWATKKFGKRNTIWLFGPATTGKTNIAEAI 124 (267)
T ss_dssp HHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHH
T ss_pred HHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHH
Confidence 345555543233556889999999999999863
No 126
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=94.00 E-value=0.016 Score=49.15 Aligned_cols=18 Identities=39% Similarity=0.422 Sum_probs=16.1
Q ss_pred EEEEcCCCCcHHHHhccC
Q 047923 173 LGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 173 i~i~G~gGiGKTTla~~v 190 (190)
+-|+|.+|.||||||+++
T Consensus 52 vLL~GppGtGKT~Larai 69 (476)
T 2ce7_A 52 ILLVGPPGTGKTLLARAV 69 (476)
T ss_dssp EEEECCTTSSHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 669999999999999864
No 127
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=94.00 E-value=0.017 Score=46.94 Aligned_cols=20 Identities=25% Similarity=0.189 Sum_probs=17.0
Q ss_pred EEEEEEcCCCCcHHHHhccC
Q 047923 171 YILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~~v 190 (190)
..+-++|.+|+||||+|+++
T Consensus 52 ~~vll~GppGtGKT~la~~i 71 (363)
T 3hws_A 52 SNILLIGPTGSGKTLLAETL 71 (363)
T ss_dssp CCEEEECCTTSSHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHH
Confidence 35678999999999999864
No 128
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=93.99 E-value=0.013 Score=46.90 Aligned_cols=20 Identities=35% Similarity=0.401 Sum_probs=17.7
Q ss_pred eEEEEEEcCCCCcHHHHhcc
Q 047923 170 VYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~ 189 (190)
-.+++|+|..|.|||||++.
T Consensus 80 Ge~vaivG~sGsGKSTLl~l 99 (306)
T 3nh6_A 80 GQTLALVGPSGAGKSTILRL 99 (306)
T ss_dssp TCEEEEESSSCHHHHHHHHH
T ss_pred CCEEEEECCCCchHHHHHHH
Confidence 35799999999999999975
No 129
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=93.93 E-value=0.019 Score=47.06 Aligned_cols=20 Identities=35% Similarity=0.577 Sum_probs=17.8
Q ss_pred eEEEEEEcCCCCcHHHHhcc
Q 047923 170 VYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~ 189 (190)
=.+++|+|..|.|||||.+.
T Consensus 54 Gei~~IiGpnGaGKSTLlr~ 73 (366)
T 3tui_C 54 GQIYGVIGASGAGKSTLIRC 73 (366)
T ss_dssp TCEEEEECCTTSSHHHHHHH
T ss_pred CCEEEEEcCCCchHHHHHHH
Confidence 35799999999999999875
No 130
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=93.89 E-value=0.035 Score=44.31 Aligned_cols=38 Identities=24% Similarity=0.161 Sum_probs=24.5
Q ss_pred ccchhHHHHHHHhhhcCCCeEEEEEEcCCCCcHHHHhcc
Q 047923 151 GRESRVEIIESLLAAESKDVYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 151 G~d~~~~~~~~~l~~~~~~~~vi~i~G~gGiGKTTla~~ 189 (190)
|...-...+..++ .+-..-.++-|.|.+|+||||||..
T Consensus 50 ~i~TG~~~LD~~l-gGl~~G~l~li~G~pG~GKTtl~l~ 87 (315)
T 3bh0_A 50 GVPSGFTELDRMT-YGYKRRNFVLIAARPSMGKTAFALK 87 (315)
T ss_dssp SBCCSCHHHHHHH-SSBCTTCEEEEECCTTSSHHHHHHH
T ss_pred CccCChHHHHhhc-CCCCCCcEEEEEeCCCCCHHHHHHH
Confidence 4444445555555 2212235677899999999999864
No 131
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=93.86 E-value=0.024 Score=45.99 Aligned_cols=21 Identities=24% Similarity=0.346 Sum_probs=18.7
Q ss_pred CeEEEEEEcCCCCcHHHHhcc
Q 047923 169 DVYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 169 ~~~vi~i~G~gGiGKTTla~~ 189 (190)
...+++|.|.+|.|||||..+
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~ 93 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEY 93 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHH
Confidence 478999999999999999764
No 132
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=93.82 E-value=0.037 Score=45.22 Aligned_cols=21 Identities=19% Similarity=0.352 Sum_probs=18.1
Q ss_pred CCeEEEEEEc-CCCCcHHHHhc
Q 047923 168 KDVYILGIWG-VGSIGKTTIAR 188 (190)
Q Consensus 168 ~~~~vi~i~G-~gGiGKTTla~ 188 (190)
...++|+|++ -||+||||+|-
T Consensus 141 ~~~kvIav~s~KGGvGKTT~a~ 162 (373)
T 3fkq_A 141 DKSSVVIFTSPCGGVGTSTVAA 162 (373)
T ss_dssp TSCEEEEEECSSTTSSHHHHHH
T ss_pred CCceEEEEECCCCCChHHHHHH
Confidence 3589999995 99999999985
No 133
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=93.80 E-value=0.027 Score=51.12 Aligned_cols=44 Identities=16% Similarity=0.342 Sum_probs=33.3
Q ss_pred ccccccchhHHHHHHHhhhc----C--C-CeEEEEEEcCCCCcHHHHhccC
Q 047923 147 NQLVGRESRVEIIESLLAAE----S--K-DVYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 147 ~~~vG~d~~~~~~~~~l~~~----~--~-~~~vi~i~G~gGiGKTTla~~v 190 (190)
..++|.+..++.+...+... . + ....+-|+|-.|+|||+||+++
T Consensus 558 ~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~l 608 (854)
T 1qvr_A 558 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTL 608 (854)
T ss_dssp HHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHH
T ss_pred cccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHH
Confidence 45789998888887776532 1 1 1457889999999999999863
No 134
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=93.73 E-value=0.024 Score=45.93 Aligned_cols=20 Identities=20% Similarity=0.318 Sum_probs=17.6
Q ss_pred eEEEEEEcCCCCcHHHHhcc
Q 047923 170 VYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~ 189 (190)
-.+|.|.|+.|+||||||..
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~ 59 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSID 59 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 35789999999999999874
No 135
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=93.68 E-value=0.024 Score=47.37 Aligned_cols=20 Identities=30% Similarity=0.257 Sum_probs=17.7
Q ss_pred eEEEEEEcCCCCcHHHHhcc
Q 047923 170 VYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~ 189 (190)
-.++.++|.+|.||||++..
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~ 117 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAK 117 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 57899999999999999864
No 136
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=93.57 E-value=0.058 Score=46.17 Aligned_cols=21 Identities=5% Similarity=0.031 Sum_probs=18.2
Q ss_pred eEEEEEEcCCCCcHHHHhccC
Q 047923 170 VYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~v 190 (190)
-.+|-+.|+.|.||||+|+++
T Consensus 395 ~~~I~l~GlsGsGKSTIa~~L 415 (511)
T 1g8f_A 395 GFSIVLGNSLTVSREQLSIAL 415 (511)
T ss_dssp CEEEEECTTCCSCHHHHHHHH
T ss_pred ceEEEecccCCCCHHHHHHHH
Confidence 467888999999999999863
No 137
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=93.35 E-value=0.042 Score=47.85 Aligned_cols=45 Identities=13% Similarity=0.065 Sum_probs=29.3
Q ss_pred cccccccchhHHHHHHHhhhcCCC------e---EEEEEEcCCCCcHHHHhccC
Q 047923 146 ENQLVGRESRVEIIESLLAAESKD------V---YILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 146 ~~~~vG~d~~~~~~~~~l~~~~~~------~---~vi~i~G~gGiGKTTla~~v 190 (190)
...++|.+.-++.+...|..+... . .-+=++|-+|+|||+||+++
T Consensus 294 ~~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~l 347 (595)
T 3f9v_A 294 APSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFI 347 (595)
T ss_dssp SSTTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSS
T ss_pred cchhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHH
Confidence 356889987666554333322100 0 03568999999999999975
No 138
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=93.30 E-value=0.077 Score=43.55 Aligned_cols=21 Identities=24% Similarity=0.303 Sum_probs=17.9
Q ss_pred CCeEEEEEE-cCCCCcHHHHhc
Q 047923 168 KDVYILGIW-GVGSIGKTTIAR 188 (190)
Q Consensus 168 ~~~~vi~i~-G~gGiGKTTla~ 188 (190)
...++|.|+ |-||+||||+|-
T Consensus 106 ~~~~vIav~s~KGGvGKTT~a~ 127 (398)
T 3ez2_A 106 SEAYVIFISNLKGGVSKTVSTV 127 (398)
T ss_dssp CSCEEEEECCSSSSSSHHHHHH
T ss_pred CCCeEEEEEeCCCCccHHHHHH
Confidence 347899998 889999999885
No 139
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=93.27 E-value=0.029 Score=45.77 Aligned_cols=19 Identities=42% Similarity=0.618 Sum_probs=17.1
Q ss_pred EEEEEEcCCCCcHHHHhcc
Q 047923 171 YILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~~ 189 (190)
.+++|.|..|.|||||.+.
T Consensus 42 e~~~llGpnGsGKSTLLr~ 60 (355)
T 1z47_A 42 EMVGLLGPSGSGKTTILRL 60 (355)
T ss_dssp CEEEEECSTTSSHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHH
Confidence 4789999999999999875
No 140
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=93.26 E-value=0.07 Score=44.60 Aligned_cols=38 Identities=18% Similarity=0.167 Sum_probs=23.9
Q ss_pred ccchhHHHHHHHhhhcCCCeEEEEEEcCCCCcHHHHhcc
Q 047923 151 GRESRVEIIESLLAAESKDVYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 151 G~d~~~~~~~~~l~~~~~~~~vi~i~G~gGiGKTTla~~ 189 (190)
|...-...+..++ .+-..-.++-|.|.+|+||||||..
T Consensus 182 ~i~tG~~~LD~~l-gGl~~G~l~ii~G~pg~GKT~lal~ 219 (444)
T 2q6t_A 182 GVRTGFKELDQLI-GTLGPGSLNIIAARPAMGKTAFALT 219 (444)
T ss_dssp -CCCSCHHHHHHH-CCCCTTCEEEEEECTTSCHHHHHHH
T ss_pred cccCCCHhhhhhc-CCcCCCcEEEEEeCCCCCHHHHHHH
Confidence 4444444555555 2222234778899999999999853
No 141
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=93.22 E-value=0.03 Score=44.46 Aligned_cols=19 Identities=26% Similarity=0.454 Sum_probs=16.9
Q ss_pred EEEEEEcCCCCcHHHHhcc
Q 047923 171 YILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~~ 189 (190)
.++++.|..|+|||||.++
T Consensus 166 ~i~~l~G~sG~GKSTLln~ 184 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSR 184 (302)
T ss_dssp CEEEEECSTTSSHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHH
Confidence 3789999999999999875
No 142
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=93.19 E-value=0.032 Score=48.92 Aligned_cols=21 Identities=29% Similarity=0.284 Sum_probs=18.4
Q ss_pred eEEEEEEcCCCCcHHHHhccC
Q 047923 170 VYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~v 190 (190)
-.+|-+.|+.|.||||+|+++
T Consensus 52 g~lIvLtGlsGSGKSTlAr~L 72 (630)
T 1x6v_B 52 GCTVWLTGLSGAGKTTVSMAL 72 (630)
T ss_dssp CEEEEEECSTTSSHHHHHHHH
T ss_pred CCEEEEEeCCCCCHHHHHHHH
Confidence 568899999999999999863
No 143
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=93.12 E-value=0.016 Score=52.28 Aligned_cols=44 Identities=20% Similarity=0.205 Sum_probs=32.0
Q ss_pred ccccccchhHHHHHHHhhhc--------C---CCeEEEEEEcCCCCcHHHHhccC
Q 047923 147 NQLVGRESRVEIIESLLAAE--------S---KDVYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 147 ~~~vG~d~~~~~~~~~l~~~--------~---~~~~vi~i~G~gGiGKTTla~~v 190 (190)
.++.|.+.-++.+.+.+... . ..-..+.++|.+|.||||||+++
T Consensus 477 ~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakal 531 (806)
T 1ypw_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAI 531 (806)
T ss_dssp CSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHH
T ss_pred cccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHH
Confidence 46778888888887766421 0 11345678999999999999864
No 144
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=93.11 E-value=0.029 Score=45.23 Aligned_cols=20 Identities=25% Similarity=0.162 Sum_probs=17.4
Q ss_pred EEEEEEcCCCCcHHHHhccC
Q 047923 171 YILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~~v 190 (190)
.+++|+|..|.|||||.+++
T Consensus 172 ~~v~i~G~~GsGKTTll~~l 191 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSI 191 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHG
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 36899999999999998863
No 145
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=93.08 E-value=0.032 Score=45.58 Aligned_cols=18 Identities=28% Similarity=0.388 Sum_probs=16.4
Q ss_pred EEEEEcCCCCcHHHHhcc
Q 047923 172 ILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 172 vi~i~G~gGiGKTTla~~ 189 (190)
+++|+|..|+|||||.+.
T Consensus 217 ~~~lvG~sG~GKSTLln~ 234 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNA 234 (358)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEECCCCccHHHHHHH
Confidence 689999999999999875
No 146
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=93.03 E-value=0.032 Score=45.35 Aligned_cols=20 Identities=25% Similarity=0.408 Sum_probs=17.5
Q ss_pred eEEEEEEcCCCCcHHHHhcc
Q 047923 170 VYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~ 189 (190)
=.+++|.|-.|.|||||.+.
T Consensus 71 Gq~~gIiG~nGaGKTTLl~~ 90 (347)
T 2obl_A 71 GQRIGIFAGSGVGKSTLLGM 90 (347)
T ss_dssp TCEEEEEECTTSSHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHH
Confidence 35799999999999999875
No 147
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=93.02 E-value=0.032 Score=48.01 Aligned_cols=20 Identities=40% Similarity=0.596 Sum_probs=17.6
Q ss_pred EEEEEEcCCCCcHHHHhccC
Q 047923 171 YILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~~v 190 (190)
.+++|+|..|.|||||++.+
T Consensus 313 e~~~i~G~NGsGKSTLlk~l 332 (538)
T 1yqt_A 313 EVIGIVGPNGIGKTTFVKML 332 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 47899999999999999853
No 148
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=93.00 E-value=0.033 Score=48.00 Aligned_cols=19 Identities=58% Similarity=0.802 Sum_probs=17.1
Q ss_pred EEEEEEcCCCCcHHHHhcc
Q 047923 171 YILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~~ 189 (190)
.+++|+|..|.|||||++.
T Consensus 295 ei~~i~G~nGsGKSTLl~~ 313 (538)
T 3ozx_A 295 EIIGILGPNGIGKTTFARI 313 (538)
T ss_dssp CEEEEECCTTSSHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHH
Confidence 3789999999999999985
No 149
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=92.99 E-value=0.036 Score=45.25 Aligned_cols=34 Identities=29% Similarity=0.241 Sum_probs=24.0
Q ss_pred HHHHHHHhh-hcCCCeEEEEEEcCCCCcHHHHhcc
Q 047923 156 VEIIESLLA-AESKDVYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 156 ~~~~~~~l~-~~~~~~~vi~i~G~gGiGKTTla~~ 189 (190)
...+..+|. .+-..-+++.|+|-+|+||||||..
T Consensus 46 ~~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~ 80 (356)
T 3hr8_A 46 SLAIDIATGVGGYPRGRIVEIFGQESSGKTTLALH 80 (356)
T ss_dssp CHHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHH
T ss_pred CHHHHHHhccCCccCCcEEEEECCCCCCHHHHHHH
Confidence 345556665 2222346899999999999999864
No 150
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=92.96 E-value=0.037 Score=48.06 Aligned_cols=21 Identities=33% Similarity=0.321 Sum_probs=18.3
Q ss_pred eEEEEEEcCCCCcHHHHhccC
Q 047923 170 VYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~v 190 (190)
-.+|-|.|+.|.||||+|+++
T Consensus 396 ~~~I~l~GlsGSGKSTiA~~L 416 (573)
T 1m8p_A 396 GFTIFLTGYMNSGKDAIARAL 416 (573)
T ss_dssp CEEEEEECSTTSSHHHHHHHH
T ss_pred ceEEEeecCCCCCHHHHHHHH
Confidence 468899999999999999863
No 151
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=92.94 E-value=0.031 Score=46.97 Aligned_cols=19 Identities=37% Similarity=0.408 Sum_probs=16.2
Q ss_pred EEEEEcCCCCcHHHHhccC
Q 047923 172 ILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 172 vi~i~G~gGiGKTTla~~v 190 (190)
-+-++|.+|.||||+|+++
T Consensus 52 ~iLl~GppGtGKT~lar~l 70 (444)
T 1g41_A 52 NILMIGPTGVGKTEIARRL 70 (444)
T ss_dssp CEEEECCTTSSHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHH
Confidence 3668999999999999863
No 152
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=92.88 E-value=0.031 Score=46.37 Aligned_cols=33 Identities=18% Similarity=0.303 Sum_probs=23.0
Q ss_pred HHHHHHHhhhcCCCeEEEEEEcCCCCcHHHHhc
Q 047923 156 VEIIESLLAAESKDVYILGIWGVGSIGKTTIAR 188 (190)
Q Consensus 156 ~~~~~~~l~~~~~~~~vi~i~G~gGiGKTTla~ 188 (190)
...+..+|..+-..-.++.|+|-.|.|||||+.
T Consensus 164 ~~~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~ 196 (400)
T 3lda_A 164 SKNLDTLLGGGVETGSITELFGEFRTGKSQLCH 196 (400)
T ss_dssp CHHHHHHTTTSEETTSEEEEEESTTSSHHHHHH
T ss_pred ChhHHHHhcCCcCCCcEEEEEcCCCCChHHHHH
Confidence 344555564322223589999999999999997
No 153
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=92.87 E-value=0.039 Score=45.22 Aligned_cols=20 Identities=20% Similarity=0.229 Sum_probs=17.8
Q ss_pred eEEEEEEcCCCCcHHHHhcc
Q 047923 170 VYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~ 189 (190)
-.+++|+|..|.|||||.++
T Consensus 136 g~~i~ivG~~GsGKTTll~~ 155 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTIAS 155 (372)
T ss_dssp SEEEEEECSSSSSHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHH
Confidence 46899999999999999875
No 154
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=92.80 E-value=0.028 Score=45.81 Aligned_cols=19 Identities=32% Similarity=0.431 Sum_probs=17.0
Q ss_pred EEEEEEcCCCCcHHHHhcc
Q 047923 171 YILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~~ 189 (190)
.+++|+|..|.|||||+++
T Consensus 176 ~~i~ivG~sGsGKSTll~~ 194 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKA 194 (361)
T ss_dssp CCEEEEESSSSCHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHH
Confidence 4689999999999999875
No 155
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=92.73 E-value=0.038 Score=44.94 Aligned_cols=34 Identities=26% Similarity=0.284 Sum_probs=23.1
Q ss_pred HHHHHHHhh-hcCCCeEEEEEEcCCCCcHHHHhcc
Q 047923 156 VEIIESLLA-AESKDVYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 156 ~~~~~~~l~-~~~~~~~vi~i~G~gGiGKTTla~~ 189 (190)
...+..+|. .+-..-+++.|+|-+|.||||||..
T Consensus 46 ~~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~ 80 (349)
T 2zr9_A 46 SISLDVALGIGGLPRGRVIEIYGPESSGKTTVALH 80 (349)
T ss_dssp CHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHH
T ss_pred CHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHH
Confidence 334455565 2212245789999999999999864
No 156
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=92.67 E-value=0.039 Score=47.51 Aligned_cols=20 Identities=30% Similarity=0.491 Sum_probs=17.7
Q ss_pred eEEEEEEcCCCCcHHHHhcc
Q 047923 170 VYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~ 189 (190)
=.+++|+|..|.|||||.+.
T Consensus 47 Ge~~~LvG~NGaGKSTLlk~ 66 (538)
T 1yqt_A 47 GMVVGIVGPNGTGKSTAVKI 66 (538)
T ss_dssp TSEEEEECCTTSSHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHH
Confidence 35799999999999999985
No 157
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=92.54 E-value=0.041 Score=48.09 Aligned_cols=19 Identities=42% Similarity=0.679 Sum_probs=17.2
Q ss_pred EEEEEEcCCCCcHHHHhcc
Q 047923 171 YILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~~ 189 (190)
.+++|.|..|.|||||.+.
T Consensus 383 ei~~i~G~NGsGKSTLlk~ 401 (607)
T 3bk7_A 383 EVIGIVGPNGIGKTTFVKM 401 (607)
T ss_dssp CEEEEECCTTSSHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHH
Confidence 3789999999999999985
No 158
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=92.46 E-value=0.075 Score=42.93 Aligned_cols=32 Identities=22% Similarity=0.308 Sum_probs=23.0
Q ss_pred HHHHHhhhcCCCeEEEEEEcCCCCcHHHHhcc
Q 047923 158 IIESLLAAESKDVYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 158 ~~~~~l~~~~~~~~vi~i~G~gGiGKTTla~~ 189 (190)
.+..+|..+-..-.++-|+|-+|.||||||..
T Consensus 110 ~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~ 141 (343)
T 1v5w_A 110 EFDKLLGGGIESMAITEAFGEFRTGKTQLSHT 141 (343)
T ss_dssp HHHHHTTSSBCSSEEEEEECCTTCTHHHHHHH
T ss_pred hHHHHhcCCCCCCeEEEEECCCCCCHHHHHHH
Confidence 44455643323357889999999999999864
No 159
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=92.42 E-value=0.043 Score=47.95 Aligned_cols=19 Identities=37% Similarity=0.469 Sum_probs=17.1
Q ss_pred EEEEEEcCCCCcHHHHhcc
Q 047923 171 YILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~~ 189 (190)
.+++|.|..|.|||||++.
T Consensus 379 Eiv~iiG~NGsGKSTLlk~ 397 (608)
T 3j16_B 379 EILVMMGENGTGKTTLIKL 397 (608)
T ss_dssp CEEEEESCTTSSHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHH
Confidence 4689999999999999985
No 160
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=92.40 E-value=0.044 Score=45.30 Aligned_cols=21 Identities=29% Similarity=0.314 Sum_probs=18.0
Q ss_pred eEEEEEEcCCCCcHHHHhccC
Q 047923 170 VYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~v 190 (190)
=.+++|.|..|.|||||.+.+
T Consensus 47 Ge~~~llGpsGsGKSTLLr~i 67 (390)
T 3gd7_A 47 GQRVGLLGRTGSGKSTLLSAF 67 (390)
T ss_dssp TCEEEEEESTTSSHHHHHHHH
T ss_pred CCEEEEECCCCChHHHHHHHH
Confidence 357999999999999998753
No 161
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=92.33 E-value=0.1 Score=43.45 Aligned_cols=21 Identities=33% Similarity=0.472 Sum_probs=17.9
Q ss_pred CeEEEEEEcCCCCcHHHHhcc
Q 047923 169 DVYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 169 ~~~vi~i~G~gGiGKTTla~~ 189 (190)
+..-++|+|.+|+|||||.+.
T Consensus 179 ~~~kvaivG~~gvGKSTLln~ 199 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNA 199 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHH
T ss_pred cCceEEEECCCCCCHHHHHHH
Confidence 356789999999999999864
No 162
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=92.32 E-value=0.83 Score=38.61 Aligned_cols=21 Identities=29% Similarity=0.226 Sum_probs=17.3
Q ss_pred CeEEEEEEcCCCCcHHHHhccC
Q 047923 169 DVYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 169 ~~~vi~i~G~gGiGKTTla~~v 190 (190)
+++ +.|+|.+|+|||||..++
T Consensus 233 ~~k-V~ivG~~nvGKSSLln~L 253 (476)
T 3gee_A 233 GVS-TVIAGKPNAGKSTLLNTL 253 (476)
T ss_dssp CEE-EEEECCTTSSHHHHHHHC
T ss_pred CCE-EEEECCCCCCHHHHHHHH
Confidence 354 889999999999998653
No 163
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=92.32 E-value=0.047 Score=44.50 Aligned_cols=19 Identities=26% Similarity=0.211 Sum_probs=17.2
Q ss_pred EEEEEEcCCCCcHHHHhcc
Q 047923 171 YILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~~ 189 (190)
.+++|.|..|.|||||.++
T Consensus 124 g~i~I~GptGSGKTTlL~~ 142 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAA 142 (356)
T ss_dssp EEEEEECSTTSCHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHH
Confidence 4899999999999999875
No 164
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=92.31 E-value=0.051 Score=46.90 Aligned_cols=20 Identities=30% Similarity=0.396 Sum_probs=18.1
Q ss_pred eEEEEEEcCCCCcHHHHhcc
Q 047923 170 VYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~ 189 (190)
..+|.+.|+.|.||||+|+.
T Consensus 372 ~~~I~l~G~~GsGKSTia~~ 391 (546)
T 2gks_A 372 GFCVWLTGLPCAGKSTIAEI 391 (546)
T ss_dssp CEEEEEECSTTSSHHHHHHH
T ss_pred ceEEEccCCCCCCHHHHHHH
Confidence 56899999999999999985
No 165
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=92.29 E-value=0.037 Score=46.76 Aligned_cols=20 Identities=30% Similarity=0.292 Sum_probs=17.6
Q ss_pred eEEEEEEcCCCCcHHHHhcc
Q 047923 170 VYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~ 189 (190)
=.+++|+|..|.|||||++.
T Consensus 138 Ge~v~IvGpnGsGKSTLlr~ 157 (460)
T 2npi_A 138 GPRVVIVGGSQTGKTSLSRT 157 (460)
T ss_dssp CCCEEEEESTTSSHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHH
Confidence 35789999999999999985
No 166
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=92.28 E-value=0.041 Score=46.00 Aligned_cols=21 Identities=19% Similarity=0.248 Sum_probs=17.8
Q ss_pred CeEEEEEEcCCCCcHHHHhcc
Q 047923 169 DVYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 169 ~~~vi~i~G~gGiGKTTla~~ 189 (190)
.+--++|+|..|.|||||.+.
T Consensus 41 ei~~vaLvG~nGaGKSTLln~ 61 (427)
T 2qag_B 41 FCFNILCVGETGLGKSTLMDT 61 (427)
T ss_dssp CEEEEEEECSTTSSSHHHHHH
T ss_pred CeeEEEEECCCCCCHHHHHHH
Confidence 344599999999999999875
No 167
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=92.27 E-value=0.049 Score=43.17 Aligned_cols=18 Identities=28% Similarity=0.540 Sum_probs=16.4
Q ss_pred EEEEEcCCCCcHHHHhcc
Q 047923 172 ILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 172 vi~i~G~gGiGKTTla~~ 189 (190)
+++|+|..|.|||||.++
T Consensus 171 iv~l~G~sG~GKSTll~~ 188 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNA 188 (301)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHH
Confidence 689999999999999875
No 168
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=92.23 E-value=0.047 Score=47.70 Aligned_cols=19 Identities=37% Similarity=0.592 Sum_probs=17.4
Q ss_pred EEEEEEcCCCCcHHHHhcc
Q 047923 171 YILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~~ 189 (190)
.+++|+|..|.|||||.+.
T Consensus 118 e~~~LiG~NGsGKSTLlki 136 (607)
T 3bk7_A 118 MVVGIVGPNGTGKTTAVKI 136 (607)
T ss_dssp SEEEEECCTTSSHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHH
Confidence 5799999999999999875
No 169
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=92.14 E-value=0.071 Score=46.16 Aligned_cols=20 Identities=20% Similarity=0.235 Sum_probs=17.9
Q ss_pred EEEEEEcCCCCcHHHHhccC
Q 047923 171 YILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~~v 190 (190)
.+++|+|..|.|||||++.+
T Consensus 368 ~~~~ivG~sGsGKSTll~~l 387 (578)
T 4a82_A 368 ETVAFVGMSGGGKSTLINLI 387 (578)
T ss_dssp CEEEEECSTTSSHHHHHTTT
T ss_pred CEEEEECCCCChHHHHHHHH
Confidence 57899999999999999864
No 170
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=92.01 E-value=0.052 Score=47.45 Aligned_cols=19 Identities=37% Similarity=0.655 Sum_probs=17.3
Q ss_pred EEEEEEcCCCCcHHHHhcc
Q 047923 171 YILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~~ 189 (190)
.+++|+|..|.|||||.+.
T Consensus 104 ei~~LvGpNGaGKSTLLki 122 (608)
T 3j16_B 104 QVLGLVGTNGIGKSTALKI 122 (608)
T ss_dssp SEEEEECCTTSSHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHH
Confidence 4799999999999999875
No 171
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=91.96 E-value=0.021 Score=45.65 Aligned_cols=18 Identities=22% Similarity=0.340 Sum_probs=16.5
Q ss_pred EEEEEcCCCCcHHHHhcc
Q 047923 172 ILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 172 vi~i~G~gGiGKTTla~~ 189 (190)
+++|+|..|+|||||.++
T Consensus 175 ~~~lvG~sG~GKSTLln~ 192 (307)
T 1t9h_A 175 TTVFAGQSGVGKSSLLNA 192 (307)
T ss_dssp EEEEEESHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 789999999999999875
No 172
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=91.70 E-value=0.15 Score=42.74 Aligned_cols=39 Identities=23% Similarity=0.157 Sum_probs=24.6
Q ss_pred cccchhHHHHHHHhhhcCCCeEEEEEEcCCCCcHHHHhcc
Q 047923 150 VGRESRVEIIESLLAAESKDVYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 150 vG~d~~~~~~~~~l~~~~~~~~vi~i~G~gGiGKTTla~~ 189 (190)
.|.......+.+++. +-..-.++-|.|.+|+||||||-.
T Consensus 178 ~gi~TG~~~LD~~lg-Gl~~G~liiIaG~pG~GKTtlal~ 216 (444)
T 3bgw_A 178 TGVPSGFTELDRMTY-GYKRRNFVLIAARPSMGKTAFALK 216 (444)
T ss_dssp CSBCCSCHHHHHHHS-SBCSSCEEEEEECSSSSHHHHHHH
T ss_pred CCcCCCcHHHHhhcC-CCCCCcEEEEEeCCCCChHHHHHH
Confidence 344444455555552 212235677899999999999853
No 173
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=91.52 E-value=0.062 Score=45.05 Aligned_cols=20 Identities=15% Similarity=0.346 Sum_probs=17.5
Q ss_pred eEEEEEEcCCCCcHHHHhcc
Q 047923 170 VYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~ 189 (190)
=..++|.|-.|.|||||.+.
T Consensus 157 Gq~~~IvG~sGsGKSTLl~~ 176 (438)
T 2dpy_A 157 GQRMGLFAGSGVGKSVLLGM 176 (438)
T ss_dssp TCEEEEEECTTSSHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHH
Confidence 35789999999999999875
No 174
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=91.49 E-value=0.15 Score=42.42 Aligned_cols=21 Identities=29% Similarity=0.164 Sum_probs=18.2
Q ss_pred CeEEEEEEcCCCCcHHHHhcc
Q 047923 169 DVYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 169 ~~~vi~i~G~gGiGKTTla~~ 189 (190)
.-.+++|.|..|.|||||.++
T Consensus 166 ~ggii~I~GpnGSGKTTlL~a 186 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYA 186 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHH
T ss_pred cCCeEEEECCCCCCHHHHHHH
Confidence 346899999999999999875
No 175
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=91.47 E-value=0.056 Score=44.15 Aligned_cols=21 Identities=29% Similarity=0.483 Sum_probs=17.9
Q ss_pred CeEEEEEEcCCCCcHHHHhcc
Q 047923 169 DVYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 169 ~~~vi~i~G~gGiGKTTla~~ 189 (190)
++++++|+|.+|+|||||.++
T Consensus 178 ~~~~V~lvG~~naGKSTLln~ 198 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNS 198 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHH
Confidence 467799999999999999764
No 176
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=91.45 E-value=0.088 Score=45.72 Aligned_cols=20 Identities=20% Similarity=0.335 Sum_probs=17.8
Q ss_pred EEEEEEcCCCCcHHHHhccC
Q 047923 171 YILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~~v 190 (190)
.+++|+|..|.|||||++.+
T Consensus 370 e~~~ivG~sGsGKSTll~~l 389 (587)
T 3qf4_A 370 SLVAVLGETGSGKSTLMNLI 389 (587)
T ss_dssp CEEEEECSSSSSHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 57899999999999999864
No 177
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=91.32 E-value=0.072 Score=46.16 Aligned_cols=19 Identities=32% Similarity=0.400 Sum_probs=17.3
Q ss_pred EEEEEEcCCCCcHHHHhcc
Q 047923 171 YILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~~ 189 (190)
.+++|+|..|.|||||++.
T Consensus 370 ~~~~ivG~sGsGKSTll~~ 388 (582)
T 3b5x_A 370 KTVALVGRSGSGKSTIANL 388 (582)
T ss_pred CEEEEECCCCCCHHHHHHH
Confidence 5799999999999999975
No 178
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=91.30 E-value=0.062 Score=42.98 Aligned_cols=32 Identities=22% Similarity=0.312 Sum_probs=21.6
Q ss_pred HHHHHhhhcCCCeEEEEEEcCCCCcHHHHhcc
Q 047923 158 IIESLLAAESKDVYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 158 ~~~~~l~~~~~~~~vi~i~G~gGiGKTTla~~ 189 (190)
.+..+|..+-..-.++-|+|.+|.||||||..
T Consensus 95 ~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~ 126 (324)
T 2z43_A 95 ALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQ 126 (324)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHH
T ss_pred hHHHhcCCCCCCCcEEEEECCCCCCHhHHHHH
Confidence 34455542211235788999999999999864
No 179
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=91.23 E-value=0.068 Score=46.30 Aligned_cols=19 Identities=32% Similarity=0.391 Sum_probs=17.2
Q ss_pred EEEEEEcCCCCcHHHHhcc
Q 047923 171 YILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~~ 189 (190)
.+++|+|..|.|||||++.
T Consensus 370 ~~~~ivG~sGsGKSTLl~~ 388 (582)
T 3b60_A 370 KTVALVGRSGSGKSTIASL 388 (582)
T ss_dssp CEEEEEECTTSSHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHH
Confidence 5789999999999999875
No 180
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=91.20 E-value=0.075 Score=43.33 Aligned_cols=35 Identities=26% Similarity=0.217 Sum_probs=23.0
Q ss_pred hHHHHHHHhh-hcCCCeEEEEEEcCCCCcHHHHhcc
Q 047923 155 RVEIIESLLA-AESKDVYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 155 ~~~~~~~~l~-~~~~~~~vi~i~G~gGiGKTTla~~ 189 (190)
-...+..+|. .+-..-+++-|.|-+|+||||||..
T Consensus 47 G~~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~ 82 (356)
T 1u94_A 47 GSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQ 82 (356)
T ss_dssp SCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHH
T ss_pred CCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHH
Confidence 3344555564 2111235788999999999999864
No 181
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=91.19 E-value=0.085 Score=41.96 Aligned_cols=32 Identities=25% Similarity=0.262 Sum_probs=22.1
Q ss_pred HHHHHhhhcCCCeEEEEEEcCCCCcHHHHhcc
Q 047923 158 IIESLLAAESKDVYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 158 ~~~~~l~~~~~~~~vi~i~G~gGiGKTTla~~ 189 (190)
.+..+|..+-..-.++-|+|-+|+||||||..
T Consensus 86 ~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~ 117 (322)
T 2i1q_A 86 ELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQ 117 (322)
T ss_dssp HHHHHTTSSEETTEEEEEEESTTSSHHHHHHH
T ss_pred hHHHhcCCCccCCeEEEEECCCCCCHHHHHHH
Confidence 34455542212246889999999999999863
No 182
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=91.15 E-value=0.092 Score=44.05 Aligned_cols=18 Identities=28% Similarity=0.353 Sum_probs=16.1
Q ss_pred EEEEEcCCCCcHHHHhcc
Q 047923 172 ILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 172 vi~i~G~gGiGKTTla~~ 189 (190)
.+-|.|.+|.||||++.+
T Consensus 47 ~~li~G~aGTGKT~ll~~ 64 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKF 64 (459)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHH
Confidence 788999999999999864
No 183
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=91.12 E-value=0.077 Score=43.00 Aligned_cols=21 Identities=29% Similarity=0.453 Sum_probs=18.2
Q ss_pred CeEEEEEEcCCCCcHHHHhcc
Q 047923 169 DVYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 169 ~~~vi~i~G~gGiGKTTla~~ 189 (190)
....++++|.+|+|||||...
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~ 186 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKA 186 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 467899999999999999764
No 184
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=91.10 E-value=0.072 Score=45.54 Aligned_cols=20 Identities=25% Similarity=0.199 Sum_probs=17.7
Q ss_pred eEEEEEEcCCCCcHHHHhcc
Q 047923 170 VYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~ 189 (190)
=.+++|.|..|.|||||++.
T Consensus 281 G~i~~i~G~~GsGKSTLl~~ 300 (525)
T 1tf7_A 281 DSIILATGATGTGKTLLVSR 300 (525)
T ss_dssp SCEEEEEECTTSSHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHH
Confidence 35899999999999999875
No 185
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=90.76 E-value=0.18 Score=42.03 Aligned_cols=21 Identities=24% Similarity=0.476 Sum_probs=17.7
Q ss_pred CeEEEEEEcCCCCcHHHHhcc
Q 047923 169 DVYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 169 ~~~vi~i~G~gGiGKTTla~~ 189 (190)
+..-++++|.+|+|||||..+
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~ 194 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNA 194 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHH
T ss_pred cCcEEEEEcCCCCCHHHHHHH
Confidence 456788999999999999764
No 186
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=90.69 E-value=0.1 Score=41.82 Aligned_cols=18 Identities=33% Similarity=0.373 Sum_probs=15.9
Q ss_pred EEEEEcCCCCcHHHHhcc
Q 047923 172 ILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 172 vi~i~G~gGiGKTTla~~ 189 (190)
-|.|+|.+|+|||||...
T Consensus 167 kI~ivG~~~vGKSsLl~~ 184 (329)
T 3o47_A 167 RILMVGLDAAGKTTILYK 184 (329)
T ss_dssp EEEEEESTTSSHHHHHHH
T ss_pred eEEEECCCCccHHHHHHH
Confidence 478999999999999865
No 187
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=90.55 E-value=0.52 Score=41.74 Aligned_cols=38 Identities=26% Similarity=0.205 Sum_probs=23.8
Q ss_pred cchhHHHHHHHhhhcCCCeEEEEEEcCCCCcHHHHhcc
Q 047923 152 RESRVEIIESLLAAESKDVYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 152 ~d~~~~~~~~~l~~~~~~~~vi~i~G~gGiGKTTla~~ 189 (190)
....++.+...+..-......|+|+|..|.|||||..+
T Consensus 51 l~~~l~~L~~~~~~l~~~~~~V~VvG~~naGKSSLlNa 88 (695)
T 2j69_A 51 LERDIEDITIASKNLQQGVFRLLVLGDMKRGKSTFLNA 88 (695)
T ss_dssp CHHHHHHHHHHHHHHHHCCEEEEEECCTTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCEEEEECCCCCCHHHHHHH
Confidence 33444445443332112345688999999999999764
No 188
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=90.48 E-value=0.082 Score=45.21 Aligned_cols=18 Identities=33% Similarity=0.217 Sum_probs=16.2
Q ss_pred EEEEEcCCCCcHHHHhcc
Q 047923 172 ILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 172 vi~i~G~gGiGKTTla~~ 189 (190)
.++|.|..|.|||||.++
T Consensus 262 ~i~I~GptGSGKTTlL~a 279 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNA 279 (511)
T ss_dssp CEEEEESTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 489999999999999875
No 189
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=90.46 E-value=0.071 Score=46.32 Aligned_cols=19 Identities=21% Similarity=0.330 Sum_probs=17.2
Q ss_pred EEEEEEcCCCCcHHHHhcc
Q 047923 171 YILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~~ 189 (190)
.+++|+|..|.|||||.+.
T Consensus 371 ~~~~ivG~sGsGKSTLl~~ 389 (595)
T 2yl4_A 371 SVTALVGPSGSGKSTVLSL 389 (595)
T ss_dssp CEEEEECCTTSSSTHHHHH
T ss_pred CEEEEECCCCCCHHHHHHH
Confidence 4789999999999999875
No 190
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=90.42 E-value=0.27 Score=38.28 Aligned_cols=20 Identities=35% Similarity=0.297 Sum_probs=16.9
Q ss_pred CeEEEEEEc-CCCCcHHHHhc
Q 047923 169 DVYILGIWG-VGSIGKTTIAR 188 (190)
Q Consensus 169 ~~~vi~i~G-~gGiGKTTla~ 188 (190)
..++|.|.+ .||+||||+|-
T Consensus 81 ~~kvI~vts~kgG~GKTt~a~ 101 (271)
T 3bfv_A 81 AVQSIVITSEAPGAGKSTIAA 101 (271)
T ss_dssp CCCEEEEECSSTTSSHHHHHH
T ss_pred CCeEEEEECCCCCCcHHHHHH
Confidence 468899996 59999999985
No 191
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=90.34 E-value=0.063 Score=44.72 Aligned_cols=20 Identities=25% Similarity=0.433 Sum_probs=17.4
Q ss_pred eEEEEEEcCCCCcHHHHhcc
Q 047923 170 VYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~ 189 (190)
...++|+|.+|.|||||.++
T Consensus 157 g~~VgLVG~~gAGKSTLL~~ 176 (416)
T 1udx_A 157 IADVGLVGYPNAGKSSLLAA 176 (416)
T ss_dssp SCSEEEECCGGGCHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHH
Confidence 45689999999999999875
No 192
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=90.26 E-value=0.08 Score=46.05 Aligned_cols=19 Identities=32% Similarity=0.335 Sum_probs=17.4
Q ss_pred EEEEEEcCCCCcHHHHhcc
Q 047923 171 YILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~~ 189 (190)
.+++|+|..|.|||||++.
T Consensus 382 ~~~~ivG~sGsGKSTll~~ 400 (598)
T 3qf4_B 382 QKVALVGPTGSGKTTIVNL 400 (598)
T ss_dssp CEEEEECCTTSSTTHHHHH
T ss_pred CEEEEECCCCCcHHHHHHH
Confidence 5899999999999999875
No 193
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=90.20 E-value=0.27 Score=38.83 Aligned_cols=20 Identities=35% Similarity=0.368 Sum_probs=17.0
Q ss_pred CeEEEEEEcC-CCCcHHHHhc
Q 047923 169 DVYILGIWGV-GSIGKTTIAR 188 (190)
Q Consensus 169 ~~~vi~i~G~-gGiGKTTla~ 188 (190)
..++|.|.|. ||+||||+|.
T Consensus 103 ~~kvI~vts~kgG~GKTtva~ 123 (299)
T 3cio_A 103 ENNILMITGATPDSGKTFVSS 123 (299)
T ss_dssp SCCEEEEEESSSSSCHHHHHH
T ss_pred CCeEEEEECCCCCCChHHHHH
Confidence 4678999985 8999999985
No 194
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=90.17 E-value=0.088 Score=43.31 Aligned_cols=21 Identities=24% Similarity=0.284 Sum_probs=10.1
Q ss_pred CCeEEEEEE-cCCCCcHHHHhc
Q 047923 168 KDVYILGIW-GVGSIGKTTIAR 188 (190)
Q Consensus 168 ~~~~vi~i~-G~gGiGKTTla~ 188 (190)
...++|.|+ |-||+||||+|-
T Consensus 109 ~~~~vIav~s~KGGvGKTT~a~ 130 (403)
T 3ez9_A 109 KSPYVIFVVNLKGGVSKTVSTV 130 (403)
T ss_dssp CSCEEEEECCC--------CHH
T ss_pred CCceEEEEEcCCCCchHHHHHH
Confidence 457899998 889999999874
No 195
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=90.00 E-value=0.18 Score=39.66 Aligned_cols=19 Identities=26% Similarity=0.356 Sum_probs=16.1
Q ss_pred eEEEEEEcCCCCcHHHHhc
Q 047923 170 VYILGIWGVGSIGKTTIAR 188 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~ 188 (190)
.--+.++|.+|+|||||..
T Consensus 155 ~~~i~i~G~~~~GKssli~ 173 (332)
T 2wkq_A 155 LIKCVVVGDGAVGKTCLLI 173 (332)
T ss_dssp CEEEEEEESTTSSHHHHHH
T ss_pred eeEEEEECCCCCChHHHHH
Confidence 4457899999999999984
No 196
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=89.52 E-value=0.17 Score=44.48 Aligned_cols=19 Identities=26% Similarity=0.475 Sum_probs=16.8
Q ss_pred EEEEEEcCCCCcHHHHhcc
Q 047923 171 YILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~~ 189 (190)
.+++|+|..|.|||||++.
T Consensus 349 e~vaIiGpnGsGKSTLl~~ 367 (670)
T 3ux8_A 349 TFVAVTGVSGSGKSTLVNE 367 (670)
T ss_dssp SEEEEECSTTSSHHHHHTT
T ss_pred CEEEEEeeCCCCHHHHHHH
Confidence 4789999999999999864
No 197
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=89.36 E-value=0.13 Score=47.47 Aligned_cols=19 Identities=42% Similarity=0.578 Sum_probs=17.0
Q ss_pred EEEEEEcCCCCcHHHHhcc
Q 047923 171 YILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~~ 189 (190)
.+++|+|..|.|||||.+.
T Consensus 462 e~v~LiGpNGsGKSTLLk~ 480 (986)
T 2iw3_A 462 RRYGICGPNGCGKSTLMRA 480 (986)
T ss_dssp CEEEEECSTTSSHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHH
Confidence 4689999999999999875
No 198
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=89.33 E-value=0.12 Score=40.16 Aligned_cols=29 Identities=14% Similarity=0.088 Sum_probs=23.1
Q ss_pred chHHHHHHhhcccceEEEecCCCcCchhh
Q 047923 19 ISESIAYAIESPAISVIIFSEGYPFSRWC 47 (190)
Q Consensus 19 ~~~~l~~ai~~s~~~ivv~S~~y~~S~wc 47 (190)
...++.+.++++++.+.|++-.-..+..|
T Consensus 11 a~~~~~~~l~~~D~vl~VvDar~P~~~~~ 39 (262)
T 3cnl_A 11 AKRQIKDLLRLVNTVVEVRDARAPFATSA 39 (262)
T ss_dssp TTHHHHHHHTTCSEEEEEEETTSTTTTSC
T ss_pred HHHHHHHHHhhCCEEEEEeeCCCCCcCcC
Confidence 45688999999999999998765555554
No 199
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=89.15 E-value=0.17 Score=41.00 Aligned_cols=21 Identities=29% Similarity=0.444 Sum_probs=17.4
Q ss_pred eEEEEEEcCCCCcHHHHhccC
Q 047923 170 VYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~v 190 (190)
+.-|+++|.+++|||||..++
T Consensus 158 la~V~lvG~~nvGKSTLln~L 178 (342)
T 1lnz_A 158 LADVGLVGFPSVGKSTLLSVV 178 (342)
T ss_dssp CCCEEEESSTTSSHHHHHHHS
T ss_pred cCeeeeeCCCCCCHHHHHHHH
Confidence 345899999999999998653
No 200
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=88.71 E-value=0.14 Score=43.80 Aligned_cols=19 Identities=26% Similarity=0.433 Sum_probs=16.2
Q ss_pred EEEEEEcCCCCcHHHHhcc
Q 047923 171 YILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~~ 189 (190)
--|+++|.+|+|||||...
T Consensus 42 ~kV~lvG~~~vGKSSLl~~ 60 (535)
T 3dpu_A 42 IKVHLIGDGMAGKTSLLKQ 60 (535)
T ss_dssp EEEEEESSSCSSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4477999999999999864
No 201
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=88.58 E-value=0.21 Score=45.35 Aligned_cols=19 Identities=26% Similarity=0.447 Sum_probs=17.2
Q ss_pred EEEEEEcCCCCcHHHHhcc
Q 047923 171 YILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~~ 189 (190)
.+++|.|..|.|||||++.
T Consensus 524 eiv~I~G~nGSGKSTLl~~ 542 (842)
T 2vf7_A 524 VMTSVTGVSGSGKSTLVSQ 542 (842)
T ss_dssp SEEEEECCTTSSHHHHCCC
T ss_pred CEEEEEcCCCcCHHHHHHH
Confidence 3789999999999999985
No 202
>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}
Probab=88.56 E-value=0.71 Score=33.91 Aligned_cols=50 Identities=12% Similarity=0.038 Sum_probs=40.7
Q ss_pred ccchHHHHHHhhcccceEEEecCCCcCchhhHHHHHHHHHhhhcCCeeEEeEE
Q 047923 17 DEISESIAYAIESPAISVIIFSEGYPFSRWCLHELVKILKYKKEYAHIVIPGF 69 (190)
Q Consensus 17 ~~~~~~l~~ai~~s~~~ivv~S~~y~~S~wcl~El~~i~~~~~~~~~~v~PvF 69 (190)
..|-+.|.+.|..|+..|+++|++...|.|-.-|+....+ ..+..||=|+
T Consensus 67 ~tIKrrLReRI~~Sk~vIllIs~~T~~s~~v~wEIe~Ai~---~~~~PII~Vy 116 (189)
T 3hyn_A 67 KTLKPRLHTRLDNSKNIILFLSSITANSRALREEMNYGIG---TKGLPVIVIY 116 (189)
T ss_dssp TTHHHHHHHHHHTEEEEEEECCTTCCCCHHHHHHHHHHTT---TTCCCEEEEE
T ss_pred HHHHHHHHHHHHhcCcEEEEEecCccccchhHHHHHHHHH---hcCCcEEEEE
Confidence 3577899999999999999999999999998888877662 2345666664
No 203
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=88.27 E-value=0.15 Score=42.22 Aligned_cols=20 Identities=20% Similarity=-0.062 Sum_probs=17.2
Q ss_pred eEEEEEEcCCCCcHHHHhcc
Q 047923 170 VYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~ 189 (190)
-..++|+|-.|.|||||++.
T Consensus 174 GQr~~IvG~sG~GKTtLl~~ 193 (422)
T 3ice_A 174 GQRGLIVAPPKAGKTMLLQN 193 (422)
T ss_dssp TCEEEEECCSSSSHHHHHHH
T ss_pred CcEEEEecCCCCChhHHHHH
Confidence 34689999999999999964
No 204
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=88.19 E-value=0.24 Score=45.61 Aligned_cols=20 Identities=25% Similarity=0.390 Sum_probs=17.6
Q ss_pred EEEEEEcCCCCcHHHHhccC
Q 047923 171 YILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~~v 190 (190)
.+++|.|..|.|||||++.+
T Consensus 669 eivaI~G~nGSGKSTLl~~i 688 (993)
T 2ygr_A 669 VLTSVTGVSGSGKSTLVNDI 688 (993)
T ss_dssp SEEEEECSTTSSHHHHHTTT
T ss_pred CEEEEEcCCCCCHHHHHHHH
Confidence 37899999999999999863
No 205
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=88.10 E-value=0.42 Score=37.53 Aligned_cols=20 Identities=30% Similarity=0.311 Sum_probs=16.6
Q ss_pred CeEEEEEEc-CCCCcHHHHhc
Q 047923 169 DVYILGIWG-VGSIGKTTIAR 188 (190)
Q Consensus 169 ~~~vi~i~G-~gGiGKTTla~ 188 (190)
..++|.|.+ -||+||||+|-
T Consensus 91 ~~kvI~vts~kgG~GKTtva~ 111 (286)
T 3la6_A 91 QNNVLMMTGVSPSIGMTFVCA 111 (286)
T ss_dssp TCCEEEEEESSSSSSHHHHHH
T ss_pred CCeEEEEECCCCCCcHHHHHH
Confidence 467888886 59999999985
No 206
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=88.10 E-value=0.17 Score=43.79 Aligned_cols=19 Identities=26% Similarity=0.338 Sum_probs=16.3
Q ss_pred EEEEEEcCCCCcHHHHhcc
Q 047923 171 YILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~~ 189 (190)
+++-|.|.+|.||||++.+
T Consensus 205 ~~~~I~G~pGTGKTt~i~~ 223 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKA 223 (574)
T ss_dssp SEEEEECCTTSCHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHH
Confidence 4677899999999999864
No 207
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=87.94 E-value=0.18 Score=42.66 Aligned_cols=18 Identities=28% Similarity=0.682 Sum_probs=16.1
Q ss_pred EEEEEcCCCCcHHHHhcc
Q 047923 172 ILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 172 vi~i~G~gGiGKTTla~~ 189 (190)
.++|+|-.|+|||||++.
T Consensus 153 ~~~i~G~sGvGKTtL~~~ 170 (473)
T 1sky_E 153 KIGLFGGAGVGKTVLIQE 170 (473)
T ss_dssp EEEEECCSSSCHHHHHHH
T ss_pred EEEEECCCCCCccHHHHH
Confidence 478999999999999874
No 208
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=87.73 E-value=0.12 Score=47.70 Aligned_cols=19 Identities=21% Similarity=0.375 Sum_probs=17.2
Q ss_pred EEEEEEcCCCCcHHHHhcc
Q 047923 171 YILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~~ 189 (190)
.+++|+|..|.|||||.+.
T Consensus 700 eivaIiGpNGSGKSTLLkl 718 (986)
T 2iw3_A 700 SRIAVIGPNGAGKSTLINV 718 (986)
T ss_dssp CEEEECSCCCHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHH
Confidence 4789999999999999875
No 209
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=87.43 E-value=0.2 Score=43.64 Aligned_cols=21 Identities=24% Similarity=0.363 Sum_probs=18.5
Q ss_pred CeEEEEEEcCCCCcHHHHhcc
Q 047923 169 DVYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 169 ~~~vi~i~G~gGiGKTTla~~ 189 (190)
.+..++|+|-.|.|||||.++
T Consensus 44 ~lp~iaIvG~nGsGKSTLL~~ 64 (608)
T 3szr_A 44 ALPAIAVIGDQSSGKSSVLEA 64 (608)
T ss_dssp CCCCEECCCCTTSCHHHHHHH
T ss_pred cCCeEEEECCCCChHHHHHHH
Confidence 367799999999999999875
No 210
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=86.90 E-value=0.22 Score=47.28 Aligned_cols=19 Identities=26% Similarity=0.440 Sum_probs=17.3
Q ss_pred EEEEEEcCCCCcHHHHhcc
Q 047923 171 YILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~~ 189 (190)
.++||+|..|.|||||++.
T Consensus 1060 e~v~ivG~sGsGKSTl~~~ 1078 (1284)
T 3g5u_A 1060 QTLALVGSSGCGKSTVVQL 1078 (1284)
T ss_dssp SEEEEECSSSTTHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHH
Confidence 4799999999999999975
No 211
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=86.87 E-value=0.23 Score=45.67 Aligned_cols=20 Identities=25% Similarity=0.415 Sum_probs=17.5
Q ss_pred EEEEEEcCCCCcHHHHhccC
Q 047923 171 YILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~~v 190 (190)
.+++|.|..|.|||||++.+
T Consensus 651 eiv~I~G~nGSGKSTLl~~l 670 (972)
T 2r6f_A 651 TFVAVTGVSGSGKSTLVNEV 670 (972)
T ss_dssp SEEECCBCTTSSHHHHHTTT
T ss_pred CEEEEEcCCCCCHHHHHHHH
Confidence 37899999999999999863
No 212
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=86.86 E-value=0.31 Score=39.78 Aligned_cols=35 Identities=31% Similarity=0.229 Sum_probs=22.3
Q ss_pred hHHHHHHHhh-hcCCCeEEEEEEcCCCCcHHHHhcc
Q 047923 155 RVEIIESLLA-AESKDVYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 155 ~~~~~~~~l~-~~~~~~~vi~i~G~gGiGKTTla~~ 189 (190)
-...+..+|. .+-..-+++-|+|-+|+||||||..
T Consensus 58 G~~~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~ 93 (366)
T 1xp8_A 58 GSLSLDLALGVGGIPRGRITEIYGPESGGKTTLALA 93 (366)
T ss_dssp SCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHH
T ss_pred CCHHHHHHhCCCCccCCcEEEEEcCCCCChHHHHHH
Confidence 3444555564 1111234677899999999999853
No 213
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=86.38 E-value=0.099 Score=42.93 Aligned_cols=18 Identities=28% Similarity=0.327 Sum_probs=16.6
Q ss_pred EEEEEcCCCCcHHHHhcc
Q 047923 172 ILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 172 vi~i~G~gGiGKTTla~~ 189 (190)
+.+|+|-.|.|||||.++
T Consensus 62 ~~~lvG~NGaGKStLl~a 79 (415)
T 4aby_A 62 FCAFTGETGAGKSIIVDA 79 (415)
T ss_dssp EEEEEESHHHHHHHHTHH
T ss_pred cEEEECCCCCCHHHHHHH
Confidence 889999999999999865
No 214
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=86.30 E-value=0.4 Score=39.29 Aligned_cols=43 Identities=21% Similarity=0.221 Sum_probs=31.3
Q ss_pred ccccccchhHHHHHHHhhhcC-CCeEEEEEEcCCCCcHHHHhccC
Q 047923 147 NQLVGRESRVEIIESLLAAES-KDVYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 147 ~~~vG~d~~~~~~~~~l~~~~-~~~~vi~i~G~gGiGKTTla~~v 190 (190)
..++|....++++.+.+..-. .+..+ -|.|-.|.|||++|+++
T Consensus 137 ~~~ig~s~~m~~l~~~i~~~a~~~~~v-li~Ge~GtGK~~lAr~i 180 (387)
T 1ny5_A 137 EEYVFESPKMKEILEKIKKISCAECPV-LITGESGVGKEVVARLI 180 (387)
T ss_dssp CCCCCCSHHHHHHHHHHHHHTTCCSCE-EEECSTTSSHHHHHHHH
T ss_pred hhhhhccHHhhHHHHHHHHhcCCCCCe-EEecCCCcCHHHHHHHH
Confidence 357888877888877665422 23444 68999999999999863
No 215
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1
Probab=86.15 E-value=0.27 Score=40.34 Aligned_cols=21 Identities=29% Similarity=0.278 Sum_probs=18.4
Q ss_pred CeEEEEEEcCCCCcHHHHhcc
Q 047923 169 DVYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 169 ~~~vi~i~G~gGiGKTTla~~ 189 (190)
....|.|-|.=|+||||+++.
T Consensus 48 ~~~fIt~EG~dGsGKTT~~~~ 68 (376)
T 1of1_A 48 TLLRVYIDGPHGMGKTTTTQL 68 (376)
T ss_dssp EEEEEEECSSTTSSHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHH
Confidence 467889999999999999875
No 216
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=85.91 E-value=0.21 Score=45.07 Aligned_cols=44 Identities=20% Similarity=0.205 Sum_probs=30.1
Q ss_pred ccccccchhHHHHHHHhhhc--------C---CCeEEEEEEcCCCCcHHHHhccC
Q 047923 147 NQLVGRESRVEIIESLLAAE--------S---KDVYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 147 ~~~vG~d~~~~~~~~~l~~~--------~---~~~~vi~i~G~gGiGKTTla~~v 190 (190)
.++.|.+..++++.+.+... . ...+-+=++|.+|.|||.||+++
T Consensus 477 ~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkai 531 (806)
T 3cf2_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAI 531 (806)
T ss_dssp TTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHH
Confidence 35568888888877654421 0 11233558999999999999874
No 217
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=85.81 E-value=0.36 Score=42.46 Aligned_cols=17 Identities=24% Similarity=0.470 Sum_probs=15.6
Q ss_pred EEEEEEcCCCCcHHHHh
Q 047923 171 YILGIWGVGSIGKTTIA 187 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla 187 (190)
.+++|+|..|.|||||+
T Consensus 45 e~~~liGpNGaGKSTLl 61 (670)
T 3ux8_A 45 KLVVLTGLSGSGKSSLA 61 (670)
T ss_dssp SEEEEECSTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHh
Confidence 47999999999999995
No 218
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=85.62 E-value=0.34 Score=45.91 Aligned_cols=20 Identities=20% Similarity=0.263 Sum_probs=17.8
Q ss_pred EEEEEEcCCCCcHHHHhccC
Q 047923 171 YILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~~v 190 (190)
.+++|+|..|.|||||++.+
T Consensus 417 ~~~~ivG~sGsGKSTl~~ll 436 (1284)
T 3g5u_A 417 QTVALVGNSGCGKSTTVQLM 436 (1284)
T ss_dssp CEEEEECCSSSSHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 57899999999999999864
No 219
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=85.61 E-value=0.5 Score=39.52 Aligned_cols=21 Identities=24% Similarity=0.476 Sum_probs=17.7
Q ss_pred CeEEEEEEcCCCCcHHHHhcc
Q 047923 169 DVYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 169 ~~~vi~i~G~gGiGKTTla~~ 189 (190)
...-+.++|.+|+|||||..+
T Consensus 194 ~~~ki~ivG~~~vGKSslin~ 214 (456)
T 4dcu_A 194 EVIQFCLIGRPNVGKSSLVNA 214 (456)
T ss_dssp TCEEEEEECSTTSSHHHHHHH
T ss_pred ccceeEEecCCCCCHHHHHHH
Confidence 356788999999999999764
No 220
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=84.52 E-value=0.28 Score=42.74 Aligned_cols=19 Identities=37% Similarity=0.218 Sum_probs=16.0
Q ss_pred EEEEEEcCCCCcHHHHhcc
Q 047923 171 YILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~~ 189 (190)
+.+-|.|.+|.||||++..
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ 183 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAK 183 (608)
T ss_dssp SEEEEECCTTSTHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHH
Confidence 4678899999999998753
No 221
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=84.45 E-value=0.7 Score=37.56 Aligned_cols=43 Identities=23% Similarity=0.290 Sum_probs=30.4
Q ss_pred ccccccchhHHHHHHHhhhc-CCCeEEEEEEcCCCCcHHHHhccC
Q 047923 147 NQLVGRESRVEIIESLLAAE-SKDVYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 147 ~~~vG~d~~~~~~~~~l~~~-~~~~~vi~i~G~gGiGKTTla~~v 190 (190)
..++|....+..+...+..- ..+.. +-|+|-.|.||+++|+++
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~a~~~~~-vli~GesGtGKe~lAr~i 172 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKIAKSKAP-VLITGESGTGKEIVARLI 172 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHHHTSCSC-EEEECCTTSSHHHHHHHH
T ss_pred ccccccchHHHHHHhhhhhhhccchh-heEEeCCCchHHHHHHHH
Confidence 45788888777777766532 22333 348899999999999863
No 222
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=84.12 E-value=0.32 Score=43.67 Aligned_cols=19 Identities=32% Similarity=0.337 Sum_probs=17.4
Q ss_pred EEEEEEcCCCCcHHHHhcc
Q 047923 171 YILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~~ 189 (190)
.+++|.|..|.|||||.+.
T Consensus 577 ~i~~I~GpNGsGKSTlLr~ 595 (765)
T 1ewq_A 577 ELVLITGPNMAGKSTFLRQ 595 (765)
T ss_dssp CEEEEESCSSSSHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHH
Confidence 5899999999999999875
No 223
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=83.60 E-value=0.75 Score=38.62 Aligned_cols=35 Identities=17% Similarity=0.239 Sum_probs=25.5
Q ss_pred hHHHHHHHhhh---cCCCeEEEEEEcCCCCcHHHHhcc
Q 047923 155 RVEIIESLLAA---ESKDVYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 155 ~~~~~~~~l~~---~~~~~~vi~i~G~gGiGKTTla~~ 189 (190)
..+.+..+|.. ....+.+|+|+|....||+||...
T Consensus 49 ~~eal~~iL~~~~~~~~~v~vVsV~G~~~~GKStLLN~ 86 (447)
T 3q5d_A 49 DETALNRILLSEAVRDKEVVAVSVAGAFRKGKSFLMDF 86 (447)
T ss_dssp CHHHHHHHHCCTTTTTSBEEEEEEEESTTSSHHHHHHH
T ss_pred CHHHHHHHHhccccCCCceEEEEEECCCCCcHHHHHHH
Confidence 34555556553 234599999999999999999653
No 224
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=83.48 E-value=0.38 Score=40.71 Aligned_cols=20 Identities=10% Similarity=0.024 Sum_probs=16.6
Q ss_pred eEEEEEEcCCCCcHHHHhcc
Q 047923 170 VYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~ 189 (190)
-.++-|.|.+|+||||||-.
T Consensus 242 G~l~li~G~pG~GKT~lal~ 261 (503)
T 1q57_A 242 GEVIMVTSGSGMVMSTFVRQ 261 (503)
T ss_dssp TCEEEEEESSCHHHHHHHHH
T ss_pred CeEEEEeecCCCCchHHHHH
Confidence 35677899999999999853
No 225
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=83.39 E-value=0.37 Score=41.49 Aligned_cols=21 Identities=24% Similarity=0.172 Sum_probs=18.4
Q ss_pred CeEEEEEEcCCCCcHHHHhcc
Q 047923 169 DVYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 169 ~~~vi~i~G~gGiGKTTla~~ 189 (190)
....|.|+|..|+|||||..+
T Consensus 64 ~~~~V~vvG~~n~GKSTLIN~ 84 (550)
T 2qpt_A 64 GKPMVLVAGQYSTGKTSFIQY 84 (550)
T ss_dssp SCCEEEEEEBTTSCHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHH
Confidence 467899999999999999764
No 226
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=83.31 E-value=0.72 Score=37.53 Aligned_cols=35 Identities=20% Similarity=0.261 Sum_probs=23.5
Q ss_pred cccchhHHHHHHHhhhcCCCeEEEEEEcCCCCcHHHHhcc
Q 047923 150 VGRESRVEIIESLLAAESKDVYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 150 vG~d~~~~~~~~~l~~~~~~~~vi~i~G~gGiGKTTla~~ 189 (190)
.|.+.-++.+.+++.. +.+.++|..|+|||||..+
T Consensus 147 ~gi~~L~~~I~~~~~~-----~~i~~vG~~nvGKStliN~ 181 (369)
T 3ec1_A 147 IGMAKVMEAINRYREG-----GDVYVVGCTNVGKSTFINR 181 (369)
T ss_dssp BTHHHHHHHHHHHHTT-----SCEEEECCTTSSHHHHHHH
T ss_pred CCHHHHHHHHHhhccc-----CcEEEEcCCCCchHHHHHH
Confidence 3555555555554422 2478899999999999754
No 227
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=83.21 E-value=0.29 Score=46.53 Aligned_cols=19 Identities=26% Similarity=0.389 Sum_probs=17.0
Q ss_pred EEEEEEcCCCCcHHHHhcc
Q 047923 171 YILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~~ 189 (190)
..+||+|..|.|||||++.
T Consensus 1106 e~vaIVG~SGsGKSTL~~l 1124 (1321)
T 4f4c_A 1106 QTLALVGPSGCGKSTVVAL 1124 (1321)
T ss_dssp CEEEEECSTTSSTTSHHHH
T ss_pred CEEEEECCCCChHHHHHHH
Confidence 4689999999999999975
No 228
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=83.19 E-value=0.37 Score=43.45 Aligned_cols=20 Identities=35% Similarity=0.250 Sum_probs=18.0
Q ss_pred eEEEEEEcCCCCcHHHHhcc
Q 047923 170 VYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~ 189 (190)
-++++|.|..|.|||||.+.
T Consensus 607 g~i~~ItGpNGsGKSTlLr~ 626 (800)
T 1wb9_A 607 RRMLIITGPNMGGKSTYMRQ 626 (800)
T ss_dssp SCEEEEECCTTSSHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHH
Confidence 46899999999999999875
No 229
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=83.14 E-value=1 Score=39.35 Aligned_cols=30 Identities=33% Similarity=0.329 Sum_probs=19.5
Q ss_pred hhHHHHHHHhhhcCCCeEEEEEEcCCCCcHHHHh
Q 047923 154 SRVEIIESLLAAESKDVYILGIWGVGSIGKTTIA 187 (190)
Q Consensus 154 ~~~~~~~~~l~~~~~~~~vi~i~G~gGiGKTTla 187 (190)
++.+.+...|.. .+ +.-|+|++|.||||..
T Consensus 193 ~Q~~AV~~al~~--~~--~~lI~GPPGTGKT~ti 222 (646)
T 4b3f_X 193 SQKEAVLFALSQ--KE--LAIIHGPPGTGKTTTV 222 (646)
T ss_dssp HHHHHHHHHHHC--SS--EEEEECCTTSCHHHHH
T ss_pred HHHHHHHHHhcC--CC--ceEEECCCCCCHHHHH
Confidence 445556555542 22 3458999999999754
No 230
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=82.94 E-value=0.39 Score=40.43 Aligned_cols=19 Identities=26% Similarity=0.483 Sum_probs=16.2
Q ss_pred eEEEEEEcCCCCcHHHHhcc
Q 047923 170 VYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~ 189 (190)
++ +.|+|.+|+|||||..+
T Consensus 225 ~k-V~ivG~~nvGKSSLln~ 243 (462)
T 3geh_A 225 LK-VAIVGRPNVGKSSLLNA 243 (462)
T ss_dssp EE-EEEEECTTSSHHHHHHH
T ss_pred CE-EEEEcCCCCCHHHHHHH
Confidence 44 78999999999999764
No 231
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=82.90 E-value=0.69 Score=31.14 Aligned_cols=32 Identities=9% Similarity=-0.153 Sum_probs=26.4
Q ss_pred HHhhcccceEEEecCCCcCchhhHHHHHHHHH
Q 047923 25 YAIESPAISVIIFSEGYPFSRWCLHELVKILK 56 (190)
Q Consensus 25 ~ai~~s~~~ivv~S~~y~~S~wcl~El~~i~~ 56 (190)
..|+.|.+.||+.+++-..|+||..|+....+
T Consensus 34 ~~I~~~~~vIvL~G~~t~~s~wv~~EI~~A~~ 65 (111)
T 1eiw_A 34 ATPEDADAVIVLAGLWGTRRDEILGAVDLARK 65 (111)
T ss_dssp CCSSSCSEEEEEGGGTTTSHHHHHHHHHHHTT
T ss_pred CccccCCEEEEEeCCCcCCChHHHHHHHHHHH
Confidence 35788999999999999999999999865443
No 232
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=82.34 E-value=0.45 Score=40.08 Aligned_cols=19 Identities=32% Similarity=0.384 Sum_probs=16.0
Q ss_pred EEEEEEcCCCCcHHHHhcc
Q 047923 171 YILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~~ 189 (190)
--+.|+|.+|+|||||..+
T Consensus 323 ~ki~lvG~~nvGKSsLl~~ 341 (497)
T 3lvq_E 323 MRILMLGLDAAGKTTILYK 341 (497)
T ss_dssp EEEEEECSTTSSHHHHHHH
T ss_pred eeEEEEcCCCCCHHHHHHH
Confidence 4567999999999999764
No 233
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=81.93 E-value=0.78 Score=36.65 Aligned_cols=19 Identities=32% Similarity=0.205 Sum_probs=16.1
Q ss_pred EEEEEEcCCCCcHHHHhcc
Q 047923 171 YILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~~ 189 (190)
+-+.|.|..|+||||||.+
T Consensus 145 ~~vl~~G~sG~GKSt~a~~ 163 (314)
T 1ko7_A 145 VGVLITGDSGIGKSETALE 163 (314)
T ss_dssp EEEEEEESTTSSHHHHHHH
T ss_pred EEEEEEeCCCCCHHHHHHH
Confidence 4577899999999999864
No 234
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=81.55 E-value=0.49 Score=45.02 Aligned_cols=19 Identities=26% Similarity=0.372 Sum_probs=17.1
Q ss_pred EEEEEEcCCCCcHHHHhcc
Q 047923 171 YILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~~ 189 (190)
..++|+|..|.|||||++.
T Consensus 445 ~~vaivG~sGsGKSTll~l 463 (1321)
T 4f4c_A 445 QTVALVGSSGCGKSTIISL 463 (1321)
T ss_dssp CEEEEEECSSSCHHHHHHH
T ss_pred cEEEEEecCCCcHHHHHHH
Confidence 4789999999999999975
No 235
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=81.25 E-value=0.48 Score=38.88 Aligned_cols=21 Identities=33% Similarity=0.501 Sum_probs=18.2
Q ss_pred CeEEEEEEcCCCCcHHHHhcc
Q 047923 169 DVYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 169 ~~~vi~i~G~gGiGKTTla~~ 189 (190)
+..-|||+|.+.+|||||-.+
T Consensus 71 g~a~V~ivG~PNvGKSTL~n~ 91 (376)
T 4a9a_A 71 GVASVGFVGFPSVGKSTLLSK 91 (376)
T ss_dssp SSEEEEEECCCCHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHH
Confidence 467899999999999999754
No 236
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=80.99 E-value=0.6 Score=38.02 Aligned_cols=35 Identities=20% Similarity=0.219 Sum_probs=23.0
Q ss_pred cccchhHHHHHHHhhhcCCCeEEEEEEcCCCCcHHHHhcc
Q 047923 150 VGRESRVEIIESLLAAESKDVYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 150 vG~d~~~~~~~~~l~~~~~~~~vi~i~G~gGiGKTTla~~ 189 (190)
.|.+.-++.+.+++.. ..+.++|..|+|||||..+
T Consensus 145 ~gi~~L~~~l~~~~~~-----~~i~~vG~~nvGKStliN~ 179 (368)
T 3h2y_A 145 QGIAELADAIEYYRGG-----KDVYVVGCTNVGKSTFINR 179 (368)
T ss_dssp TTHHHHHHHHHHHHTT-----SCEEEEEBTTSSHHHHHHH
T ss_pred cCHHHHHhhhhhhccc-----ceEEEecCCCCChhHHHHH
Confidence 3555555555444321 2478899999999999754
No 237
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=80.92 E-value=0.54 Score=39.01 Aligned_cols=19 Identities=32% Similarity=0.109 Sum_probs=16.2
Q ss_pred EEEEEEcCCCCcHHHHhcc
Q 047923 171 YILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~~ 189 (190)
.-++|.|-.|+|||||++.
T Consensus 176 QR~lIfg~~g~GKT~Ll~~ 194 (427)
T 3l0o_A 176 QRGMIVAPPKAGKTTILKE 194 (427)
T ss_dssp CEEEEEECTTCCHHHHHHH
T ss_pred ceEEEecCCCCChhHHHHH
Confidence 3578999999999999864
No 238
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=79.50 E-value=0.6 Score=42.85 Aligned_cols=20 Identities=30% Similarity=0.160 Sum_probs=18.0
Q ss_pred eEEEEEEcCCCCcHHHHhcc
Q 047923 170 VYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~ 189 (190)
-++++|.|..|.||||+.+.
T Consensus 662 g~i~~ItGpNGsGKSTlLr~ 681 (934)
T 3thx_A 662 QMFHIITGPNMGGKSTYIRQ 681 (934)
T ss_dssp BCEEEEECCTTSSHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 47899999999999999875
No 239
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=79.14 E-value=0.9 Score=36.28 Aligned_cols=18 Identities=28% Similarity=0.217 Sum_probs=14.9
Q ss_pred EEEEEcCCCCcHHHHhcc
Q 047923 172 ILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 172 vi~i~G~gGiGKTTla~~ 189 (190)
-+-|.|-.|+||||+|-.
T Consensus 149 gvli~G~sG~GKStlal~ 166 (312)
T 1knx_A 149 GVLLTGRSGIGKSECALD 166 (312)
T ss_dssp EEEEEESSSSSHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHH
Confidence 356889999999999853
No 240
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=79.09 E-value=0.61 Score=46.13 Aligned_cols=32 Identities=28% Similarity=0.287 Sum_probs=22.6
Q ss_pred HHHHHhh-hcCCCeEEEEEEcCCCCcHHHHhcc
Q 047923 158 IIESLLA-AESKDVYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 158 ~~~~~l~-~~~~~~~vi~i~G~gGiGKTTla~~ 189 (190)
.+..+|. ..-..-+.+-|+|.+|+||||||.+
T Consensus 1414 ~LD~lLG~GGi~~g~~vll~GppGtGKT~LA~a 1446 (2050)
T 3cmu_A 1414 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQ 1446 (2050)
T ss_dssp HHHHHHSSSSEETTSEEEEECCTTSSHHHHHHH
T ss_pred HHHHhcCCCCccCCeEEEEECCCCCCHHHHHHH
Confidence 3556665 2212345788999999999999975
No 241
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=78.84 E-value=1 Score=37.82 Aligned_cols=21 Identities=24% Similarity=0.183 Sum_probs=18.4
Q ss_pred CCeEEEEEEcCCCCcHHHHhc
Q 047923 168 KDVYILGIWGVGSIGKTTIAR 188 (190)
Q Consensus 168 ~~~~vi~i~G~gGiGKTTla~ 188 (190)
...++..|.|.+|.||||+.+
T Consensus 159 ~~~~v~~I~G~aGsGKTt~I~ 179 (446)
T 3vkw_A 159 SSAKVVLVDGVPGCGKTKEIL 179 (446)
T ss_dssp CCSEEEEEEECTTSCHHHHHH
T ss_pred ccccEEEEEcCCCCCHHHHHH
Confidence 358899999999999999875
No 242
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=78.04 E-value=1.8 Score=37.29 Aligned_cols=19 Identities=37% Similarity=0.562 Sum_probs=14.8
Q ss_pred eEEEEEEcCCCCcHHHHhc
Q 047923 170 VYILGIWGVGSIGKTTIAR 188 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~ 188 (190)
-.++-+-|.||+||||+|-
T Consensus 327 ~~~~~~~~~~g~Gktt~a~ 345 (589)
T 1ihu_A 327 HGLIMLMGKGGVGKTTMAA 345 (589)
T ss_dssp CEEEEEECSTTSSHHHHHH
T ss_pred CeEEEEecCCCCChhhHHH
Confidence 3455567999999999975
No 243
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=77.61 E-value=0.73 Score=42.69 Aligned_cols=21 Identities=29% Similarity=0.370 Sum_probs=18.4
Q ss_pred eEEEEEEcCCCCcHHHHhccC
Q 047923 170 VYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~v 190 (190)
-++++|.|..|.|||||.+.+
T Consensus 789 g~i~~ItGpNgsGKSTlLr~i 809 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQA 809 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHH
Confidence 378999999999999998753
No 244
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=77.20 E-value=2.2 Score=35.92 Aligned_cols=37 Identities=19% Similarity=0.231 Sum_probs=26.9
Q ss_pred cchhHHHHHHHhhh---cCCCeEEEEEEcCCCCcHHHHhc
Q 047923 152 RESRVEIIESLLAA---ESKDVYILGIWGVGSIGKTTIAR 188 (190)
Q Consensus 152 ~d~~~~~~~~~l~~---~~~~~~vi~i~G~gGiGKTTla~ 188 (190)
..-..+.+..+|.. ....+.||+|+|..+.||+||..
T Consensus 46 l~ln~eAl~~iL~~~~i~~~~v~vvsv~G~~~~gks~l~N 85 (457)
T 4ido_A 46 FELDETALNRILLSEAVRDKEVVAVSVAGAFRKGKSFLMD 85 (457)
T ss_dssp EEECHHHHHHHHSSTTTTTSBEEEEEEEEBTTSSHHHHHH
T ss_pred EEECHHHHHHHHhccccCCCceEEEEEECCCCCchhHHHH
Confidence 33445556656644 23459999999999999999875
No 245
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=76.96 E-value=0.9 Score=39.59 Aligned_cols=17 Identities=29% Similarity=0.253 Sum_probs=14.2
Q ss_pred EEEEEcCCCCcHHHHhc
Q 047923 172 ILGIWGVGSIGKTTIAR 188 (190)
Q Consensus 172 vi~i~G~gGiGKTTla~ 188 (190)
+.-|.|.+|.||||++.
T Consensus 197 ~~li~GppGTGKT~~~~ 213 (624)
T 2gk6_A 197 LSLIQGPPGTGKTVTSA 213 (624)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred CeEEECCCCCCHHHHHH
Confidence 45689999999999764
No 246
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=76.77 E-value=1.3 Score=38.52 Aligned_cols=21 Identities=29% Similarity=0.211 Sum_probs=18.1
Q ss_pred CeEEEEEEcCCCCcHHHHhcc
Q 047923 169 DVYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 169 ~~~vi~i~G~gGiGKTTla~~ 189 (190)
...-|+|+|..+.|||||...
T Consensus 176 ~~~~I~iiG~~d~GKSTLi~~ 196 (592)
T 3mca_A 176 PVVHLVVTGHVDSGKSTMLGR 196 (592)
T ss_dssp CEEEEEEECCSSSTHHHHHHH
T ss_pred CccEEEEEcCCCCCHHHHHHH
Confidence 467789999999999999753
No 247
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=76.70 E-value=1.2 Score=40.71 Aligned_cols=17 Identities=24% Similarity=0.472 Sum_probs=15.4
Q ss_pred EEEEEEcCCCCcHHHHh
Q 047923 171 YILGIWGVGSIGKTTIA 187 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla 187 (190)
.+++|.|..|.|||||+
T Consensus 611 eiv~I~G~SGSGKSTLl 627 (916)
T 3pih_A 611 VFVCVTGVSGSGKSSLV 627 (916)
T ss_dssp SEEEEECSTTSSHHHHH
T ss_pred cEEEEEccCCCChhhhH
Confidence 37889999999999996
No 248
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=76.65 E-value=0.59 Score=42.80 Aligned_cols=20 Identities=20% Similarity=0.190 Sum_probs=17.9
Q ss_pred eEEEEEEcCCCCcHHHHhcc
Q 047923 170 VYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~ 189 (190)
-++++|.|..|.|||||.+.
T Consensus 673 g~i~~ItGPNGaGKSTlLr~ 692 (918)
T 3thx_B 673 ERVMIITGPNMGGKSSYIKQ 692 (918)
T ss_dssp CCEEEEESCCCHHHHHHHHH
T ss_pred CeEEEEECCCCCchHHHHHH
Confidence 46899999999999999875
No 249
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=75.42 E-value=0.95 Score=39.49 Aligned_cols=19 Identities=21% Similarity=0.258 Sum_probs=15.7
Q ss_pred EEEEEEcCCCCcHHHHhcc
Q 047923 171 YILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~~ 189 (190)
--|+|+|..|.|||||...
T Consensus 168 lkV~ivG~~n~GKSTLin~ 186 (611)
T 3izq_1 168 LSFVVLGHVDAGKSTLMGR 186 (611)
T ss_dssp CEEEEECCSSSCHHHHHHH
T ss_pred eEEEEEECCCCCHHHHHHH
Confidence 3467999999999999753
No 250
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=74.83 E-value=1 Score=38.17 Aligned_cols=17 Identities=29% Similarity=0.659 Sum_probs=15.3
Q ss_pred EEEEEcCCCCcHHHHhc
Q 047923 172 ILGIWGVGSIGKTTIAR 188 (190)
Q Consensus 172 vi~i~G~gGiGKTTla~ 188 (190)
-++|.|-.|+|||||++
T Consensus 155 r~~Ifgg~G~GKT~L~~ 171 (482)
T 2ck3_D 155 KIGLFGGAGVGKTVLIM 171 (482)
T ss_dssp EEEEEECTTSSHHHHHH
T ss_pred eeeeecCCCCChHHHHH
Confidence 47899999999999985
No 251
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=73.86 E-value=1.8 Score=32.38 Aligned_cols=18 Identities=33% Similarity=0.333 Sum_probs=14.8
Q ss_pred EEEEEEcCCCCcHHHHhc
Q 047923 171 YILGIWGVGSIGKTTIAR 188 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~ 188 (190)
+.+.+.|-.|.||||+..
T Consensus 77 ~~~~i~g~TGsGKTt~~~ 94 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVP 94 (235)
T ss_dssp SEEEEECCTTSSHHHHHH
T ss_pred CEEEEEeCCCCCcHHhHH
Confidence 357889999999999653
No 252
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=73.45 E-value=1.8 Score=36.72 Aligned_cols=44 Identities=14% Similarity=0.003 Sum_probs=28.6
Q ss_pred ccccccccchhHHHHHHHhhhcCCCeE---EEEEEcCCCCcHHHHhccC
Q 047923 145 KENQLVGRESRVEIIESLLAAESKDVY---ILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 145 ~~~~~vG~d~~~~~~~~~l~~~~~~~~---vi~i~G~gGiGKTTla~~v 190 (190)
... ++|.+.-+..+.-.|..+..+.+ -+=|.|-+|. ||+||+++
T Consensus 212 Iap-I~G~e~vK~aLll~L~GG~~k~rgdihVLL~G~PGt-KS~Lar~i 258 (506)
T 3f8t_A 212 IAP-LPGAEEVGKMLALQLFSCVGKNSERLHVLLAGYPVV-CSEILHHV 258 (506)
T ss_dssp HCC-STTCHHHHHHHHHHHTTCCSSGGGCCCEEEESCHHH-HHHHHHHH
T ss_pred hcc-cCCCHHHHHHHHHHHcCCccccCCceeEEEECCCCh-HHHHHHHH
Confidence 345 88998866666544444321111 2557899999 99999863
No 253
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=72.47 E-value=1.2 Score=37.83 Aligned_cols=17 Identities=29% Similarity=0.659 Sum_probs=15.2
Q ss_pred EEEEEcCCCCcHHHHhc
Q 047923 172 ILGIWGVGSIGKTTIAR 188 (190)
Q Consensus 172 vi~i~G~gGiGKTTla~ 188 (190)
-++|.|-.|+|||+|+.
T Consensus 167 r~gIfgg~GvGKT~L~~ 183 (498)
T 1fx0_B 167 KIGLFGGAGVGKTVLIM 183 (498)
T ss_dssp CEEEEECSSSSHHHHHH
T ss_pred eEEeecCCCCCchHHHH
Confidence 47899999999999985
No 254
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=72.22 E-value=1.4 Score=43.05 Aligned_cols=39 Identities=23% Similarity=0.180 Sum_probs=25.4
Q ss_pred ccchhHHHHHHHhh-hcCCCeEEEEEEcCCCCcHHHHhcc
Q 047923 151 GRESRVEIIESLLA-AESKDVYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 151 G~d~~~~~~~~~l~-~~~~~~~vi~i~G~gGiGKTTla~~ 189 (190)
+...-..++..+|. .+-..-.++-|.|-+|+||||||..
T Consensus 712 ~i~TG~~eLD~lLg~GGl~~G~lVlI~G~PG~GKTtLal~ 751 (1706)
T 3cmw_A 712 TISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQ 751 (1706)
T ss_dssp EECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHH
T ss_pred ccccCcHHHHHHhccCCcCCCceEEEECCCCCCcHHHHHH
Confidence 44444555666664 2111234788899999999999864
No 255
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=72.10 E-value=1.1 Score=43.60 Aligned_cols=21 Identities=38% Similarity=0.414 Sum_probs=17.7
Q ss_pred eEEEEEEcCCCCcHHHHhccC
Q 047923 170 VYILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~v 190 (190)
-|++=++|.+|.|||+||+++
T Consensus 1082 g~~~l~~G~~g~GKT~la~~~ 1102 (1706)
T 3cmw_A 1082 GRIVEIYGPESSGKTTLTLQV 1102 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHH
T ss_pred CCEEEEEcCCCCChHHHHHHH
Confidence 356779999999999999863
No 256
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=71.84 E-value=1.4 Score=39.65 Aligned_cols=17 Identities=29% Similarity=0.253 Sum_probs=14.3
Q ss_pred EEEEEcCCCCcHHHHhc
Q 047923 172 ILGIWGVGSIGKTTIAR 188 (190)
Q Consensus 172 vi~i~G~gGiGKTTla~ 188 (190)
+.-|.|.+|.||||++.
T Consensus 373 ~~lI~GppGTGKT~ti~ 389 (800)
T 2wjy_A 373 LSLIQGPPGTGKTVTSA 389 (800)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred eEEEEcCCCCCHHHHHH
Confidence 45689999999998764
No 257
>1ii2_A Phosphoenolpyruvate carboxykinase; phosphate binding loop, lyase; 2.00A {Trypanosoma cruzi} SCOP: c.91.1.1 c.109.1.1
Probab=70.57 E-value=2.2 Score=36.47 Aligned_cols=18 Identities=28% Similarity=0.501 Sum_probs=15.6
Q ss_pred EEEEEEcCCCCcHHHHhc
Q 047923 171 YILGIWGVGSIGKTTIAR 188 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~ 188 (190)
.++-+.|..|.|||||+.
T Consensus 214 ~~~~ffGlSGtGKTTLs~ 231 (524)
T 1ii2_A 214 DVTVFFGLSGTGKTTLSA 231 (524)
T ss_dssp CEEEEECCTTSSHHHHHC
T ss_pred CEEEEEccCCcchhhhhh
Confidence 477789999999999974
No 258
>1ytm_A Phosphoenolpyruvate carboxykinase [ATP], phosphoenolpyruvate; domain closure, nucleotide binding; HET: ATP; 2.20A {Anaerobiospirillum succiniciproducens} PDB: 1yvy_A
Probab=70.41 E-value=2.3 Score=36.50 Aligned_cols=18 Identities=28% Similarity=0.446 Sum_probs=15.5
Q ss_pred EEEEEEcCCCCcHHHHhc
Q 047923 171 YILGIWGVGSIGKTTIAR 188 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~ 188 (190)
.++-+.|..|.|||||+.
T Consensus 236 ~~~~ffGlSGtGKTTLs~ 253 (532)
T 1ytm_A 236 NTAIFFGLSGTGKTTLST 253 (532)
T ss_dssp SEEEEECCTTSSHHHHHC
T ss_pred eEEEEEecCCCCHHHHhh
Confidence 367788999999999984
No 259
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=70.20 E-value=1.1 Score=37.73 Aligned_cols=21 Identities=19% Similarity=0.197 Sum_probs=17.7
Q ss_pred CeEEEEEEcCCCCcHHHHhcc
Q 047923 169 DVYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 169 ~~~vi~i~G~gGiGKTTla~~ 189 (190)
....++|+|..+.|||||...
T Consensus 42 ~~~~i~iiG~vd~GKSTLi~~ 62 (467)
T 1r5b_A 42 EHVNIVFIGHVDAGKSTLGGN 62 (467)
T ss_dssp EEEEEEEEECGGGTHHHHHHH
T ss_pred CeeEEEEEECCCCCHHHHHHH
Confidence 456789999999999999753
No 260
>2olr_A Phosphoenolpyruvate carboxykinase; carbon dioxide, lyase; HET: ATP; 1.60A {Escherichia coli K12} SCOP: c.91.1.1 c.109.1.1 PDB: 1k3c_A* 1k3d_A* 1aq2_A* 2olq_A* 1os1_A* 2pxz_X* 1ayl_A* 2py7_X* 1oen_A 1ylh_A* 1ygg_A*
Probab=69.83 E-value=2.4 Score=36.36 Aligned_cols=18 Identities=28% Similarity=0.510 Sum_probs=15.5
Q ss_pred EEEEEEcCCCCcHHHHhc
Q 047923 171 YILGIWGVGSIGKTTIAR 188 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~ 188 (190)
.+.-+.|..|.|||||+.
T Consensus 242 ~~~lffGlSGtGKTTLs~ 259 (540)
T 2olr_A 242 DVAVFFGLSGTGKTTLST 259 (540)
T ss_dssp CEEEEECSTTSSHHHHHC
T ss_pred CEEEEEccCCCCHHHHhc
Confidence 467788999999999974
No 261
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=69.77 E-value=0.5 Score=40.03 Aligned_cols=19 Identities=26% Similarity=0.368 Sum_probs=16.1
Q ss_pred EEEEEEcCCCCcHHHHhcc
Q 047923 171 YILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~~ 189 (190)
-.++|+|.+|+|||||..+
T Consensus 244 ~kV~ivG~pnvGKSSLln~ 262 (482)
T 1xzp_A 244 LRMVIVGKPNVGKSTLLNR 262 (482)
T ss_dssp EEEEEECCHHHHTCHHHHH
T ss_pred CEEEEECcCCCcHHHHHHH
Confidence 3578999999999999754
No 262
>1j3b_A ATP-dependent phosphoenolpyruvate carboxykinase; adenosine triphosphate, T thermophilus; 2.00A {Thermus thermophilus} SCOP: c.91.1.1 c.109.1.1 PDB: 1xkv_A* 2pc9_A*
Probab=68.66 E-value=2.4 Score=36.26 Aligned_cols=18 Identities=28% Similarity=0.510 Sum_probs=15.5
Q ss_pred EEEEEEcCCCCcHHHHhc
Q 047923 171 YILGIWGVGSIGKTTIAR 188 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~ 188 (190)
.+..+.|..|.|||||+.
T Consensus 226 ~~~~ffGlSGtGKTtLs~ 243 (529)
T 1j3b_A 226 DVAVFFGLSGTGKTTLST 243 (529)
T ss_dssp CEEEEEECTTSCHHHHTC
T ss_pred cEEEEEccccCChhhHhh
Confidence 467788999999999985
No 263
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=68.63 E-value=1.3 Score=43.86 Aligned_cols=41 Identities=22% Similarity=0.170 Sum_probs=27.8
Q ss_pred ccccchhHHHHHHHhh-hcCCCeEEEEEEcCCCCcHHHHhcc
Q 047923 149 LVGRESRVEIIESLLA-AESKDVYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 149 ~vG~d~~~~~~~~~l~-~~~~~~~vi~i~G~gGiGKTTla~~ 189 (190)
..+...-...+..+|. .+-..-+++-|+|.+|+||||||-.
T Consensus 361 ~~~I~TG~~~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLq 402 (2050)
T 3cmu_A 361 VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQ 402 (2050)
T ss_dssp CCEECCSCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHH
T ss_pred CceeeCCCHHHHHHhccCCccCCcEEEEEeCCCCCHHHHHHH
Confidence 4455555666777775 2111235788999999999999864
No 264
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=67.46 E-value=2.2 Score=36.42 Aligned_cols=16 Identities=44% Similarity=0.297 Sum_probs=14.3
Q ss_pred EEEEEcCCCCcHHHHh
Q 047923 172 ILGIWGVGSIGKTTIA 187 (190)
Q Consensus 172 vi~i~G~gGiGKTTla 187 (190)
-++|.|-.|+||||||
T Consensus 177 R~~I~g~~g~GKT~La 192 (515)
T 2r9v_A 177 RELIIGDRQTGKTAIA 192 (515)
T ss_dssp BEEEEEETTSSHHHHH
T ss_pred EEEEEcCCCCCccHHH
Confidence 3789999999999996
No 265
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=66.37 E-value=2.1 Score=37.18 Aligned_cols=19 Identities=21% Similarity=0.132 Sum_probs=16.3
Q ss_pred EEEEEEcCCCCcHHHHhcc
Q 047923 171 YILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~~ 189 (190)
.-++|.|-.|+|||+|+..
T Consensus 233 qr~~Ifgg~g~GKT~L~~~ 251 (600)
T 3vr4_A 233 GAAAVPGPFGAGKTVVQHQ 251 (600)
T ss_dssp CEEEEECCTTSCHHHHHHH
T ss_pred CEEeeecCCCccHHHHHHH
Confidence 3578999999999999864
No 266
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=66.32 E-value=8.5 Score=39.40 Aligned_cols=18 Identities=28% Similarity=0.407 Sum_probs=15.1
Q ss_pred EEEEEcCCCCcHHHHhcc
Q 047923 172 ILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 172 vi~i~G~gGiGKTTla~~ 189 (190)
-.=++|.||.|||||++.
T Consensus 1611 ~~LLvGvgGsGkqSltrL 1628 (2695)
T 4akg_A 1611 HMMLIGASRTGKTILTRF 1628 (2695)
T ss_dssp EEEEECTTTSCHHHHHHH
T ss_pred CEEEECCCCCcHHHHHHH
Confidence 345789999999999984
No 267
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=66.22 E-value=1.3 Score=37.37 Aligned_cols=17 Identities=24% Similarity=0.307 Sum_probs=14.1
Q ss_pred EEEEEcCCCCcHHHHhc
Q 047923 172 ILGIWGVGSIGKTTIAR 188 (190)
Q Consensus 172 vi~i~G~gGiGKTTla~ 188 (190)
-++|.|-.|+|||||+.
T Consensus 154 r~~Ifgg~G~GKt~Ll~ 170 (469)
T 2c61_A 154 KLPIFSASGLPHNEIAL 170 (469)
T ss_dssp BCCEEECTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 36788999999999765
No 268
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=66.15 E-value=2.2 Score=36.32 Aligned_cols=16 Identities=50% Similarity=0.337 Sum_probs=14.3
Q ss_pred EEEEEcCCCCcHHHHh
Q 047923 172 ILGIWGVGSIGKTTIA 187 (190)
Q Consensus 172 vi~i~G~gGiGKTTla 187 (190)
-++|.|-.|+||||||
T Consensus 164 R~~Ifg~~g~GKT~La 179 (502)
T 2qe7_A 164 RELIIGDRQTGKTTIA 179 (502)
T ss_dssp BCEEEECSSSCHHHHH
T ss_pred EEEEECCCCCCchHHH
Confidence 4789999999999996
No 269
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=65.67 E-value=2.3 Score=36.23 Aligned_cols=16 Identities=44% Similarity=0.316 Sum_probs=14.2
Q ss_pred EEEEEcCCCCcHHHHh
Q 047923 172 ILGIWGVGSIGKTTIA 187 (190)
Q Consensus 172 vi~i~G~gGiGKTTla 187 (190)
-++|.|-.|+||||||
T Consensus 164 R~~I~g~~g~GKT~La 179 (510)
T 2ck3_A 164 RELIIGDRQTGKTSIA 179 (510)
T ss_dssp BCEEEESTTSSHHHHH
T ss_pred EEEEecCCCCCchHHH
Confidence 3688999999999995
No 270
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=65.42 E-value=1.4 Score=37.15 Aligned_cols=17 Identities=12% Similarity=0.261 Sum_probs=14.7
Q ss_pred EEEEcCCCCcHHHHhcc
Q 047923 173 LGIWGVGSIGKTTIARA 189 (190)
Q Consensus 173 i~i~G~gGiGKTTla~~ 189 (190)
++|.|-.|+|||||+..
T Consensus 154 ~~Ifgg~G~GKt~L~~~ 170 (465)
T 3vr4_D 154 LPVFSGSGLPHKELAAQ 170 (465)
T ss_dssp CCEEECTTSCHHHHHHH
T ss_pred EEEeCCCCcChHHHHHH
Confidence 67889999999999753
No 271
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=65.30 E-value=2.4 Score=38.22 Aligned_cols=30 Identities=23% Similarity=0.267 Sum_probs=19.5
Q ss_pred hhHHHHHHHhhhcCCCeEEEEEEcCCCCcHHHHhc
Q 047923 154 SRVEIIESLLAAESKDVYILGIWGVGSIGKTTIAR 188 (190)
Q Consensus 154 ~~~~~~~~~l~~~~~~~~vi~i~G~gGiGKTTla~ 188 (190)
.+.+.+...+. . .+.-|.|.+|.||||++.
T Consensus 364 ~Q~~Av~~~l~---~--~~~lI~GppGTGKT~~i~ 393 (802)
T 2xzl_A 364 SQSNAVSHVLQ---R--PLSLIQGPPGTGKTVTSA 393 (802)
T ss_dssp HHHHHHHHHTT---C--SEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHHhc---C--CCEEEECCCCCCHHHHHH
Confidence 44444544442 2 245689999999998754
No 272
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=64.93 E-value=1.2 Score=37.42 Aligned_cols=17 Identities=24% Similarity=0.290 Sum_probs=14.5
Q ss_pred EEEEcCCCCcHHHHhcc
Q 047923 173 LGIWGVGSIGKTTIARA 189 (190)
Q Consensus 173 i~i~G~gGiGKTTla~~ 189 (190)
++|.|-.|+|||||+..
T Consensus 150 ~~Ifgg~G~GKt~L~~~ 166 (464)
T 3gqb_B 150 LPIFSGSGLPANEIAAQ 166 (464)
T ss_dssp CCEEEETTSCHHHHHHH
T ss_pred EEEecCCCCCchHHHHH
Confidence 67889999999999753
No 273
>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A 3j0j_A* 1um2_C
Probab=64.56 E-value=2 Score=37.10 Aligned_cols=19 Identities=21% Similarity=0.090 Sum_probs=16.2
Q ss_pred EEEEEEcCCCCcHHHHhcc
Q 047923 171 YILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~~ 189 (190)
.-++|.|-.|+|||+|+..
T Consensus 222 qr~~Ifg~~g~GKT~l~~~ 240 (578)
T 3gqb_A 222 GTAAIPGPFGSGKSVTQQS 240 (578)
T ss_dssp CEEEECCCTTSCHHHHHHH
T ss_pred CEEeeeCCCCccHHHHHHH
Confidence 3578999999999999864
No 274
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=64.15 E-value=5.2 Score=30.04 Aligned_cols=32 Identities=25% Similarity=0.172 Sum_probs=20.5
Q ss_pred cchhHHHHHHHhhhcCCCeEEEEEEcCCCCcHHHHhc
Q 047923 152 RESRVEIIESLLAAESKDVYILGIWGVGSIGKTTIAR 188 (190)
Q Consensus 152 ~d~~~~~~~~~l~~~~~~~~vi~i~G~gGiGKTTla~ 188 (190)
++.+.+.+..++... + +-++|-.|.|||.+|.
T Consensus 95 ~~~Q~~ai~~~~~~~----~-~ll~~~tG~GKT~~a~ 126 (237)
T 2fz4_A 95 RDYQEKALERWLVDK----R-GCIVLPTGSGKTHVAM 126 (237)
T ss_dssp CHHHHHHHHHHTTTS----E-EEEEESSSTTHHHHHH
T ss_pred CHHHHHHHHHHHhCC----C-EEEEeCCCCCHHHHHH
Confidence 344455555555332 2 5577899999999885
No 275
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=63.48 E-value=2.2 Score=36.34 Aligned_cols=16 Identities=38% Similarity=0.279 Sum_probs=14.3
Q ss_pred EEEEEcCCCCcHHHHh
Q 047923 172 ILGIWGVGSIGKTTIA 187 (190)
Q Consensus 172 vi~i~G~gGiGKTTla 187 (190)
-++|.|-.|+||||||
T Consensus 165 R~~Ifg~~g~GKT~La 180 (507)
T 1fx0_A 165 RELIIGDRQTGKTAVA 180 (507)
T ss_dssp BCBEEESSSSSHHHHH
T ss_pred EEEEecCCCCCccHHH
Confidence 4689999999999996
No 276
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=62.85 E-value=1.6 Score=37.80 Aligned_cols=19 Identities=26% Similarity=0.169 Sum_probs=16.3
Q ss_pred EEEEEEcCCCCcHHHHhcc
Q 047923 171 YILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~~ 189 (190)
.-++|.|-.|+|||+|++.
T Consensus 228 qr~~I~g~~g~GKT~L~~~ 246 (588)
T 3mfy_A 228 GTAAIPGPAGSGKTVTQHQ 246 (588)
T ss_dssp CEEEECSCCSHHHHHHHHH
T ss_pred CeEEeecCCCCCHHHHHHH
Confidence 3478999999999999864
No 277
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=62.17 E-value=2.7 Score=35.82 Aligned_cols=19 Identities=21% Similarity=0.071 Sum_probs=15.9
Q ss_pred EEEEEEcCCCCcHHHHhcc
Q 047923 171 YILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~~ 189 (190)
.-+.|.|..|.||||+.+.
T Consensus 168 pHlLIaG~TGSGKSt~L~~ 186 (512)
T 2ius_A 168 PHLLVAGTTGSGASVGVNA 186 (512)
T ss_dssp CSEEEECCTTSSHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 4577889999999998764
No 278
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=60.80 E-value=2.5 Score=34.93 Aligned_cols=19 Identities=32% Similarity=0.506 Sum_probs=15.4
Q ss_pred eEEEEEEcCCCCcHHHHhcc
Q 047923 170 VYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~ 189 (190)
+++ =+.|.|..||||+.|+
T Consensus 41 ~kl-LLLG~geSGKSTi~KQ 59 (402)
T 1azs_C 41 HRL-LLLGAGESGKSTIVKQ 59 (402)
T ss_dssp EEE-EEEESTTSSHHHHHHH
T ss_pred ceE-EEecCCCCchhhHHHH
Confidence 444 4779999999999885
No 279
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=60.68 E-value=2.9 Score=34.33 Aligned_cols=18 Identities=28% Similarity=0.337 Sum_probs=15.0
Q ss_pred EEEEEEcCCCCcHHHHhc
Q 047923 171 YILGIWGVGSIGKTTIAR 188 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~ 188 (190)
+-+.|+|..|.||||+.+
T Consensus 54 ~h~~i~G~tGsGKs~~~~ 71 (437)
T 1e9r_A 54 RHLLVNGATGTGKSVLLR 71 (437)
T ss_dssp GCEEEEECTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 346788999999999874
No 280
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=60.23 E-value=1.3 Score=37.50 Aligned_cols=19 Identities=26% Similarity=0.258 Sum_probs=16.5
Q ss_pred EEEEEcCCCCcHHHHhccC
Q 047923 172 ILGIWGVGSIGKTTIARAN 190 (190)
Q Consensus 172 vi~i~G~gGiGKTTla~~v 190 (190)
+..|+|-.|.|||||..++
T Consensus 62 ~n~i~G~NGaGKS~lleAl 80 (517)
T 4ad8_A 62 FCAFTGETGAGKSIIVDAL 80 (517)
T ss_dssp EEEEEESHHHHHHHHTHHH
T ss_pred eEEEEcCCCCCHHHHHHHH
Confidence 7789999999999998753
No 281
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=59.48 E-value=8.4 Score=36.48 Aligned_cols=20 Identities=35% Similarity=0.330 Sum_probs=17.5
Q ss_pred eEEEEEEcCCCCcHHHHhcc
Q 047923 170 VYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~ 189 (190)
...|+|+|..+.|||||..+
T Consensus 296 ~lnIvIIGhvDvGKSTLInr 315 (1289)
T 3avx_A 296 HVNVGTIGHVDHGKTTLTAA 315 (1289)
T ss_dssp EEEEEEEESTTSSHHHHHHH
T ss_pred eeEEEEEcCCCCCHHHHHHH
Confidence 56789999999999999764
No 282
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=59.45 E-value=5.1 Score=35.96 Aligned_cols=42 Identities=21% Similarity=0.284 Sum_probs=27.8
Q ss_pred cccccchhHHHHHHHhhh----cC---CCeEEEEEEcCCCCcHHHHhcc
Q 047923 148 QLVGRESRVEIIESLLAA----ES---KDVYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 148 ~~vG~d~~~~~~~~~l~~----~~---~~~~vi~i~G~gGiGKTTla~~ 189 (190)
...|++.....+.++... +. -.+..|+++|..+.|||||..+
T Consensus 22 ~~~~~~~li~~inkl~d~l~~lg~~~~i~lp~I~vvG~~saGKSSllna 70 (772)
T 3zvr_A 22 GNRGMEDLIPLVNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLEN 70 (772)
T ss_dssp ---CGGGHHHHHHHHHHHHHTTTCCGGGCCSEEEEEECTTTCHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHhcCccccCCCCEEEEECCCCCcHHHHHHH
Confidence 455777666666655431 11 2478899999999999999764
No 283
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=58.47 E-value=2.8 Score=42.75 Aligned_cols=16 Identities=31% Similarity=0.360 Sum_probs=14.1
Q ss_pred EEEEcCCCCcHHHHhc
Q 047923 173 LGIWGVGSIGKTTIAR 188 (190)
Q Consensus 173 i~i~G~gGiGKTTla~ 188 (190)
+=++|.+|.|||+||+
T Consensus 1270 vLL~GPpGtGKT~la~ 1285 (2695)
T 4akg_A 1270 IILCGPPGSGKTMIMN 1285 (2695)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 4588999999999995
No 284
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=58.25 E-value=3.7 Score=34.96 Aligned_cols=16 Identities=38% Similarity=0.272 Sum_probs=14.2
Q ss_pred EEEEEcCCCCcHHHHh
Q 047923 172 ILGIWGVGSIGKTTIA 187 (190)
Q Consensus 172 vi~i~G~gGiGKTTla 187 (190)
-++|.|-.|+||||||
T Consensus 164 R~~Ifg~~g~GKT~l~ 179 (513)
T 3oaa_A 164 RELIIGDRQTGKTALA 179 (513)
T ss_dssp BCEEEESSSSSHHHHH
T ss_pred EEEeecCCCCCcchHH
Confidence 3688999999999996
No 285
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=53.83 E-value=6.4 Score=36.25 Aligned_cols=17 Identities=24% Similarity=0.470 Sum_probs=15.2
Q ss_pred EEEEEEcCCCCcHHHHh
Q 047923 171 YILGIWGVGSIGKTTIA 187 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla 187 (190)
+++.|.|..|.||++||
T Consensus 45 ~lvv~tG~SGSGKSSLa 61 (972)
T 2r6f_A 45 KLVVLTGLSGSGKSSLA 61 (972)
T ss_dssp SEEEEEESTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 46778999999999998
No 286
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=53.50 E-value=6.5 Score=36.30 Aligned_cols=17 Identities=24% Similarity=0.452 Sum_probs=15.3
Q ss_pred EEEEEEcCCCCcHHHHh
Q 047923 171 YILGIWGVGSIGKTTIA 187 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla 187 (190)
+++.|.|..|.||++||
T Consensus 47 ~lvv~tG~SGSGKSSLa 63 (993)
T 2ygr_A 47 ALIVFTGLSGSGKSSLA 63 (993)
T ss_dssp SEEEEEESTTSSHHHHH
T ss_pred CEEEEECCCCCcHHHHH
Confidence 46778999999999998
No 287
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=53.02 E-value=10 Score=39.45 Aligned_cols=15 Identities=33% Similarity=0.554 Sum_probs=13.5
Q ss_pred EEcCCCCcHHHHhcc
Q 047923 175 IWGVGSIGKTTIARA 189 (190)
Q Consensus 175 i~G~gGiGKTTla~~ 189 (190)
++|.||.||++|++.
T Consensus 1651 LVGvgGSGkqSLtrL 1665 (3245)
T 3vkg_A 1651 LIGVSGGGKSVLSRF 1665 (3245)
T ss_dssp EEESTTSSHHHHHHH
T ss_pred EecCCCCcHHHHHHH
Confidence 679999999999974
No 288
>2pp6_A Gifsy-2 prophage ATP-binding sugar transporter-LI protein; beta barrel, 4 helix bundle, structural genomics, PSI-2; 2.70A {Salmonella typhimurium LT2} SCOP: b.106.1.2
Probab=49.64 E-value=5.7 Score=26.04 Aligned_cols=23 Identities=17% Similarity=0.105 Sum_probs=13.0
Q ss_pred HHHHHHhhcccceEEEecCCCcC
Q 047923 21 ESIAYAIESPAISVIIFSEGYPF 43 (190)
Q Consensus 21 ~~l~~ai~~s~~~ivv~S~~y~~ 43 (190)
+..+.++..+.++++|||..|--
T Consensus 42 ~~emg~lsG~~rsLvvFSsgYrP 64 (102)
T 2pp6_A 42 LAELGPVEGNGKNVVVFSGNVIP 64 (102)
T ss_dssp TC--------CEEEEECCSSCCC
T ss_pred HHHhCCccCCceEEEEecCCccc
Confidence 34567799999999999999966
No 289
>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}
Probab=47.39 E-value=17 Score=28.79 Aligned_cols=20 Identities=20% Similarity=0.096 Sum_probs=16.5
Q ss_pred eEEEEEEcCCCCcHHHHhcc
Q 047923 170 VYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla~~ 189 (190)
--+|.+=|+-|.||+|..+.
T Consensus 86 ~vlIvfEG~DgAGKgt~Ik~ 105 (304)
T 3czq_A 86 RVMAVFEGRDAAGKGGAIHA 105 (304)
T ss_dssp CEEEEEEESTTSSHHHHHHH
T ss_pred CeEEEEeCCCCCCHHHHHHH
Confidence 34777889999999998764
No 290
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=45.24 E-value=8.1 Score=34.58 Aligned_cols=29 Identities=24% Similarity=0.194 Sum_probs=21.0
Q ss_pred hHHHHHHHhhhcCCCeEEEEEEcCCCCcHHHHh
Q 047923 155 RVEIIESLLAAESKDVYILGIWGVGSIGKTTIA 187 (190)
Q Consensus 155 ~~~~~~~~l~~~~~~~~vi~i~G~gGiGKTTla 187 (190)
..+.+...+..+ ..+.|.|..|.||||+.
T Consensus 98 q~~~i~~~l~~~----~~vii~gpTGSGKTtll 126 (773)
T 2xau_A 98 QRDEFLKLYQNN----QIMVFVGETGSGKTTQI 126 (773)
T ss_dssp GHHHHHHHHHHC----SEEEEECCTTSSHHHHH
T ss_pred HHHHHHHHHhCC----CeEEEECCCCCCHHHHH
Confidence 456666666543 35778999999999954
No 291
>2d00_A V-type ATP synthase subunit F; V-ATPase, CHEY, FRET, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.149.1.1 PDB: 3a5c_H* 3a5d_H 3j0j_H*
Probab=43.82 E-value=55 Score=21.44 Aligned_cols=59 Identities=10% Similarity=0.108 Sum_probs=36.2
Q ss_pred CCeeEEEeCCCCCcccchHHHHHHhhcccceEEEecCCCcCchhhHHHHHHHHHhhhcCCeeEEeE
Q 047923 3 QNIQTFIDDQLNRGDEISESIAYAIESPAISVIIFSEGYPFSRWCLHELVKILKYKKEYAHIVIPG 68 (190)
Q Consensus 3 ~gi~~f~d~~~~~g~~~~~~l~~ai~~s~~~ivv~S~~y~~S~wcl~El~~i~~~~~~~~~~v~Pv 68 (190)
.|+.+|... ..+++...+.+.+++..++|++++++.+. .+.+...-+.. +.....|+||
T Consensus 21 aGi~~~~v~---~~ee~~~~~~~l~~~~digIIlIte~~a~---~i~~~i~~~~~-~~~~P~Il~I 79 (109)
T 2d00_A 21 AGLEGYGAS---SAEEAQSLLETLVERGGYALVAVDEALLP---DPERAVERLMR-GRDLPVLLPI 79 (109)
T ss_dssp TTSEEEECS---SHHHHHHHHHHHHHHCCCSEEEEETTTCS---CHHHHHHHHTT-CCCCCEEEEE
T ss_pred cCCeEEEeC---CHHHHHHHHHHHhhCCCeEEEEEeHHHHH---hhHHHHHHHHh-CCCCeEEEEE
Confidence 477777442 23566666677777779999999999998 34443332211 1223456666
No 292
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=41.93 E-value=9.2 Score=33.10 Aligned_cols=19 Identities=26% Similarity=0.134 Sum_probs=15.6
Q ss_pred EEEEEEcCCCCcHHHHhcc
Q 047923 171 YILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla~~ 189 (190)
.-+.|.|..|.|||++.+.
T Consensus 215 pHlLIaG~TGSGKS~~L~t 233 (574)
T 2iut_A 215 PHLLVAGTTGSGKSVGVNA 233 (574)
T ss_dssp CCEEEECCTTSSHHHHHHH
T ss_pred CeeEEECCCCCCHHHHHHH
Confidence 3467899999999998764
No 293
>1w78_A FOLC bifunctional protein; DHFS, dihydrofolate synthase, synthase, ATP-binding, folate biosynthesis, ligase, multifunctional enzyme; HET: KCX PD8 ADP; 1.82A {Escherichia coli} PDB: 1w7k_A*
Probab=40.43 E-value=22 Score=29.06 Aligned_cols=33 Identities=24% Similarity=0.416 Sum_probs=23.2
Q ss_pred hHHHHHHHhhhcCCCeEEEEEEcCCCCcHHHHhcc
Q 047923 155 RVEIIESLLAAESKDVYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 155 ~~~~~~~~l~~~~~~~~vi~i~G~gGiGKTTla~~ 189 (190)
++..+.+.|.....+.++|+|-|- -||||.+..
T Consensus 34 r~~~~l~~lg~p~~~~~vI~VTGT--nGKtTT~~~ 66 (422)
T 1w78_A 34 RVSLVAARLGVLKPAPFVFTVAGT--NGKGTTCRT 66 (422)
T ss_dssp HHHHHHHHHTCSSCSSEEEEEECS--SCHHHHHHH
T ss_pred HHHHHHHHcCCcccCCcEEEEeCC--cChHHHHHH
Confidence 355555666555556899999888 579998753
No 294
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=38.05 E-value=8.7 Score=27.52 Aligned_cols=32 Identities=25% Similarity=0.244 Sum_probs=20.2
Q ss_pred cchhHHHHHHHhhhcCCCeEEEEEEcCCCCcHHHHhc
Q 047923 152 RESRVEIIESLLAAESKDVYILGIWGVGSIGKTTIAR 188 (190)
Q Consensus 152 ~d~~~~~~~~~l~~~~~~~~vi~i~G~gGiGKTTla~ 188 (190)
++.+.+.+..++... -+-+++..|.|||.++-
T Consensus 35 ~~~Q~~~i~~~~~~~-----~~li~~~tGsGKT~~~~ 66 (216)
T 3b6e_A 35 RPYQMEVAQPALEGK-----NIIICLPTGSGKTRVAV 66 (216)
T ss_dssp CHHHHHHHHHHHTTC-----CEEEECSCHHHHHHHHH
T ss_pred hHHHHHHHHHHhcCC-----CEEEEcCCCCCHHHHHH
Confidence 344455555554321 25578999999999874
No 295
>1byr_A Protein (endonuclease); phosphodiesterase,; 2.00A {Salmonella typhimurium} SCOP: d.136.1.1 PDB: 1bys_A
Probab=37.38 E-value=92 Score=20.84 Aligned_cols=34 Identities=15% Similarity=0.155 Sum_probs=26.8
Q ss_pred eeEEEeCCCCCcccchHHHHHHhhcccceEEEecCCCc
Q 047923 5 IQTFIDDQLNRGDEISESIAYAIESPAISVIIFSEGYP 42 (190)
Q Consensus 5 i~~f~d~~~~~g~~~~~~l~~ai~~s~~~ivv~S~~y~ 42 (190)
+.+++. +++.+.+.+.++|++++-.|.+.++.+.
T Consensus 5 v~~~f~----p~~~~~~~~~~~i~~A~~~I~i~~~~~~ 38 (155)
T 1byr_A 5 VQVGYS----PEGSARVLVLSAIDSAKTSIRMMAYSFT 38 (155)
T ss_dssp EEEEEE----TTTHHHHHHHHHHHHCSSEEEEEESSBC
T ss_pred eEEEEC----CCCcHHHHHHHHHHHHhhEEEEEEEEeC
Confidence 455555 5667788999999999999999987663
No 296
>1q2j_A MU-conotoxin SMIIIA; HET: PCA; NMR {Synthetic} SCOP: j.30.1.1 PDB: 2yen_A*
Probab=37.16 E-value=5 Score=19.13 Aligned_cols=11 Identities=36% Similarity=0.616 Sum_probs=8.5
Q ss_pred CCCcCchhhHH
Q 047923 39 EGYPFSRWCLH 49 (190)
Q Consensus 39 ~~y~~S~wcl~ 49 (190)
||--+|.||.+
T Consensus 7 pngCs~rWCrd 17 (26)
T 1q2j_A 7 RRGCSSRWCRD 17 (26)
T ss_dssp SSCCCSSSSSS
T ss_pred CCcccchhhcc
Confidence 56678899976
No 297
>3aon_B V-type sodium ATPase subunit G; V-ATPase, coiled-coil, alpha/beta fold, hydrol Na(+)-ATPase, NTPA3-NTPB3, NTPC, central AXIS; HET: MSE; 2.00A {Enterococcus hirae}
Probab=36.85 E-value=28 Score=23.23 Aligned_cols=57 Identities=14% Similarity=0.095 Sum_probs=35.5
Q ss_pred CCeeEEEeCCCCCcccchHHHHHHhhcccceEEEecCCCcCchhhHHHHHHHHHhhhcCCeeEEeE
Q 047923 3 QNIQTFIDDQLNRGDEISESIAYAIESPAISVIIFSEGYPFSRWCLHELVKILKYKKEYAHIVIPG 68 (190)
Q Consensus 3 ~gi~~f~d~~~~~g~~~~~~l~~ai~~s~~~ivv~S~~y~~S~wcl~El~~i~~~~~~~~~~v~Pv 68 (190)
.|+.+|... .-+++...+.+.+++ .++|+++++..+.. +.+++.. ++ +.....|++|
T Consensus 20 aGie~~~v~---~~ee~~~~~~~l~~~-digIIlIte~ia~~--i~~~i~~-~~--~~~~P~IveI 76 (115)
T 3aon_B 20 FGFDVQHGT---TKTEIRKTIDEMAKN-EYGVIYITEQCANL--VPETIER-YK--GQLTPAIILI 76 (115)
T ss_dssp GTCEEECCC---SHHHHHHHHHHHHHT-TEEEEEEEHHHHTT--CHHHHHH-HH--TSSSCEEEEE
T ss_pred cCCeEEEeC---CHHHHHHHHHHHHhc-CceEEEEeHHHHHH--hHHHHHH-Hh--CCCCCEEEEE
Confidence 467776442 225565666667777 99999999998873 3444333 32 3334567776
No 298
>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A*
Probab=35.18 E-value=9.8 Score=23.62 Aligned_cols=29 Identities=21% Similarity=0.340 Sum_probs=17.5
Q ss_pred hcccceEEEecCCCcCchhhHHHHHHHHH
Q 047923 28 ESPAISVIIFSEGYPFSRWCLHELVKILK 56 (190)
Q Consensus 28 ~~s~~~ivv~S~~y~~S~wcl~El~~i~~ 56 (190)
=++.++++|||++---..||-..+..+++
T Consensus 38 CdaeV~livfs~~gk~~~~~s~~~~~il~ 66 (77)
T 1egw_A 38 CDCEIALIIFNSSNKLFQYASTDMDKVLL 66 (77)
T ss_dssp TTCEEEEEEECTTCCEEEEESSCHHHHHH
T ss_pred cCCeEEEEEECCCCCEeeCCCCCHHHHHH
Confidence 47889999999974333343333334443
No 299
>3nrs_A Dihydrofolate:folylpolyglutamate synthetase; structural genomics, center for structural genomics of infec diseases, csgid; HET: TLA MES; 1.80A {Yersinia pestis} PDB: 3n2a_A* 3pyz_A* 3qcz_A*
Probab=32.77 E-value=32 Score=28.32 Aligned_cols=32 Identities=25% Similarity=0.250 Sum_probs=21.8
Q ss_pred hHHHHHHHhhhcCCCeEEEEEEcCCCCcHHHHhc
Q 047923 155 RVEIIESLLAAESKDVYILGIWGVGSIGKTTIAR 188 (190)
Q Consensus 155 ~~~~~~~~l~~~~~~~~vi~i~G~gGiGKTTla~ 188 (190)
+++.+.+.|.......++|+|-|-. ||||.+.
T Consensus 37 r~~~ll~~lg~p~~~~~vI~VtGTN--GKgSt~~ 68 (437)
T 3nrs_A 37 RVKQVAERLDLLKPAPKIFTVAGTN--GKGTTCC 68 (437)
T ss_dssp HHHHHHHHTTCSCSSSEEEEEECSS--SHHHHHH
T ss_pred HHHHHHHHcCCccccCCEEEEECCc--ChHHHHH
Confidence 4555555554444468999999885 6998765
No 300
>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}
Probab=32.04 E-value=24 Score=22.42 Aligned_cols=30 Identities=17% Similarity=0.336 Sum_probs=17.7
Q ss_pred cchHHHHHHhhcccceEEEecCCCcCchhhHH
Q 047923 18 EISESIAYAIESPAISVIIFSEGYPFSRWCLH 49 (190)
Q Consensus 18 ~~~~~l~~ai~~s~~~ivv~S~~y~~S~wcl~ 49 (190)
.....+.+.|.... |+||+......+||-.
T Consensus 5 ~~~~~~~~~i~~~~--vvvf~~g~~~~~~C~~ 34 (105)
T 2yan_A 5 KLEERLKVLTNKAS--VMLFMKGNKQEAKCGF 34 (105)
T ss_dssp HHHHHHHHHHTSSS--EEEEESBCSSSBCTTH
T ss_pred HHHHHHHHHhccCC--EEEEEecCCCCCCCcc
Confidence 34445566666554 6778875555566653
No 301
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=30.96 E-value=53 Score=23.50 Aligned_cols=15 Identities=20% Similarity=0.211 Sum_probs=11.8
Q ss_pred EEEEcCCCCcHHHHh
Q 047923 173 LGIWGVGSIGKTTIA 187 (190)
Q Consensus 173 i~i~G~gGiGKTTla 187 (190)
+-+.+-.|.|||..+
T Consensus 54 ~li~~~TGsGKT~~~ 68 (220)
T 1t6n_A 54 VLCQAKSGMGKTAVF 68 (220)
T ss_dssp EEEECCTTSCHHHHH
T ss_pred EEEECCCCCchhhhh
Confidence 556788999999754
No 302
>3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus}
Probab=30.35 E-value=12 Score=29.91 Aligned_cols=15 Identities=40% Similarity=0.773 Sum_probs=13.2
Q ss_pred EEEEEEcCCCCcHHH
Q 047923 171 YILGIWGVGSIGKTT 185 (190)
Q Consensus 171 ~vi~i~G~gGiGKTT 185 (190)
+.+||+|+|.||+..
T Consensus 142 ~tvGIiG~G~IG~~v 156 (334)
T 3kb6_A 142 LTLGVIGTGRIGSRV 156 (334)
T ss_dssp SEEEEECCSHHHHHH
T ss_pred cEEEEECcchHHHHH
Confidence 479999999999865
No 303
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=29.49 E-value=58 Score=23.32 Aligned_cols=14 Identities=21% Similarity=0.090 Sum_probs=11.7
Q ss_pred EEEEcCCCCcHHHH
Q 047923 173 LGIWGVGSIGKTTI 186 (190)
Q Consensus 173 i~i~G~gGiGKTTl 186 (190)
+-+.+-.|.|||..
T Consensus 54 ~lv~~pTGsGKT~~ 67 (224)
T 1qde_A 54 VLAQAQSGTGKTGT 67 (224)
T ss_dssp EEEECCTTSSHHHH
T ss_pred EEEECCCCCcHHHH
Confidence 55779999999976
No 304
>4h3d_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, aldolase class I; HET: PGE SHL; 1.95A {Clostridium difficile} PDB: 3js3_A*
Probab=28.46 E-value=45 Score=25.48 Aligned_cols=60 Identities=22% Similarity=0.119 Sum_probs=37.5
Q ss_pred EEeCCCCCcccchHHHHHHhhcccceEEEecCCCcCchhhHHHHHHHHHhhhcCCeeEEeE
Q 047923 8 FIDDQLNRGDEISESIAYAIESPAISVIIFSEGYPFSRWCLHELVKILKYKKEYAHIVIPG 68 (190)
Q Consensus 8 f~d~~~~~g~~~~~~l~~ai~~s~~~ivv~S~~y~~S~wcl~El~~i~~~~~~~~~~v~Pv 68 (190)
|+|-++..++++..++.+......+-| |.|--.++.+|-.+||..++......+.-|+=|
T Consensus 116 ~iDvEl~~~~~~~~~l~~~a~~~~~ki-I~S~Hdf~~TP~~~el~~~~~~~~~~gaDIvKi 175 (258)
T 4h3d_A 116 LIDVELFMGDEVIDEVVNFAHKKEVKV-IISNHDFNKTPKKEEIVSRLCRMQELGADLPKI 175 (258)
T ss_dssp EEEEEGGGCHHHHHHHHHHHHHTTCEE-EEEEEESSCCCCHHHHHHHHHHHHHTTCSEEEE
T ss_pred hhHHhhhccHHHHHHHHHHHHhCCCEE-EEEEecCCCCCCHHHHHHHHHHHHHhCCCEEEE
Confidence 555566666666667776666655544 456555566777888888887665555434433
No 305
>2wem_A Glutaredoxin-related protein 5; chromosome 14 open reading frame 87, Fe/S cluster, oxidoreductase, thioredoxin family, GLRX5, FLB4739, C14ORF87; HET: GTT; 2.40A {Homo sapiens} PDB: 2wul_A*
Probab=28.43 E-value=36 Score=22.54 Aligned_cols=37 Identities=24% Similarity=0.450 Sum_probs=21.9
Q ss_pred cchHHHHHHhhcccceEEEecCCCcCchhhHH--HHHHHHH
Q 047923 18 EISESIAYAIESPAISVIIFSEGYPFSRWCLH--ELVKILK 56 (190)
Q Consensus 18 ~~~~~l~~ai~~s~~~ivv~S~~y~~S~wcl~--El~~i~~ 56 (190)
.+...+.+.|.+.+ |+|||+...+-+||-. ....+++
T Consensus 8 ~~~~~v~~~i~~~~--Vvvfsk~t~~~p~Cp~C~~ak~lL~ 46 (118)
T 2wem_A 8 GSAEQLDALVKKDK--VVVFLKGTPEQPQCGFSNAVVQILR 46 (118)
T ss_dssp -CHHHHHHHHHHSS--EEEEESBCSSSBSSHHHHHHHHHHH
T ss_pred cHHHHHHHHhccCC--EEEEEecCCCCCccHHHHHHHHHHH
Confidence 44456667777665 6778887655555653 2344443
No 306
>3dt5_A Uncharacterized protein AF_0924; structural genomics, APC7732, unknown function, PSI-2, prote structure initiative; HET: MSE; 1.94A {Archaeoglobus fulgidus}
Probab=27.52 E-value=42 Score=21.65 Aligned_cols=61 Identities=18% Similarity=0.411 Sum_probs=35.1
Q ss_pred CCcCchhhHHHHHHHHHhhhcC----CeeEEeEEeecCCccccccCCchhhHHHHHHHhhhhhhHHHHhHHHHHHH
Q 047923 40 GYPFSRWCLHELVKILKYKKEY----AHIVIPGFYRGDPSEVRSQTGSFGNSFSKLEERFNENSEKLQSWRNATKE 111 (190)
Q Consensus 40 ~y~~S~wcl~El~~i~~~~~~~----~~~v~PvFy~v~ps~Vr~q~g~~~~~f~~~~~~~~~~~e~v~kWr~AL~e 111 (190)
.|+-..---||...|+.|++-. -.+|+|.-|+.....+- |+-.=.| + ..+..+.|++||.-
T Consensus 36 syvytaqtedeietiitcrrylagnnllrvlpmhfkfkadkia---gsanwtf------y--akedfeqwkealdv 100 (135)
T 3dt5_A 36 SYVYTAQTEDEIETIITCRRYLAGNNLLRVLPMHFKFKADKIA---GSANWTF------Y--AKEDFEQWKEALDV 100 (135)
T ss_dssp SSCCCTTHHHHHHHHHHTTGGGSCHHHHHHCCSCCGGGEECCT---TCSSEEE------S--SHHHHHHHHHHHHH
T ss_pred hHheeccchhHHHHHHHHHHHhcccchhhhcchheeeecchhc---cccceeE------E--eHhhHHHHHHHHHH
Confidence 3444455789999999998632 13788886665444321 2110001 0 12457889998853
No 307
>1o5z_A Folylpolyglutamate synthase/dihydrofolate synthas; TM0166, structural genomics, JC protein structure initiative; 2.10A {Thermotoga maritima} SCOP: c.59.1.2 c.72.2.2
Probab=27.19 E-value=36 Score=28.05 Aligned_cols=32 Identities=22% Similarity=0.280 Sum_probs=20.0
Q ss_pred HHHHHHHhhhcCCCeEEEEEEcCCCCcHHHHhcc
Q 047923 156 VEIIESLLAAESKDVYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 156 ~~~~~~~l~~~~~~~~vi~i~G~gGiGKTTla~~ 189 (190)
+..+.+.|.....+.++|+|-|- -||||.+..
T Consensus 38 ~~~~l~~lg~p~~~~~vI~VTGT--nGKtTT~~~ 69 (442)
T 1o5z_A 38 ISMLLSKLGNPHLEYKTIHIGGT--NGKGSVANM 69 (442)
T ss_dssp HHHHHHHTTCGGGSSEEEEEECS--SSHHHHHHH
T ss_pred HHHHHHHcCCchhcCCEEEEECC--cCHHHHHHH
Confidence 33333444333335789999887 579998753
No 308
>2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii}
Probab=27.14 E-value=1.2e+02 Score=21.47 Aligned_cols=17 Identities=24% Similarity=0.212 Sum_probs=11.7
Q ss_pred EEeecCCccccccCCch
Q 047923 68 GFYRGDPSEVRSQTGSF 84 (190)
Q Consensus 68 vFy~v~ps~Vr~q~g~~ 84 (190)
+||+||-.++......|
T Consensus 75 ~f~kVDVDe~~e~a~~y 91 (160)
T 2av4_A 75 VIYLVDITEVPDFNTMY 91 (160)
T ss_dssp EEEEEETTTCCTTTTTT
T ss_pred EEEEEECCCCHHHHHHc
Confidence 38999988776654444
No 309
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=27.07 E-value=52 Score=27.86 Aligned_cols=34 Identities=18% Similarity=0.139 Sum_probs=22.1
Q ss_pred HHHHHHHhhhcCCCeEEEEEEcCCCCcHHHHhcc
Q 047923 156 VEIIESLLAAESKDVYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 156 ~~~~~~~l~~~~~~~~vi~i~G~gGiGKTTla~~ 189 (190)
+-++-.++..+...--+|-+=||-|.||+|..+.
T Consensus 29 L~~lQ~~~~~~~~~~vlIvfEG~D~AGKg~~Ik~ 62 (500)
T 3czp_A 29 LLEAQFELKQQARFPVIILINGIEGAGKGETVKL 62 (500)
T ss_dssp HHHHHHHHHHHCCCCEEEEEEECTTSSHHHHHHH
T ss_pred HHHHHHHHHhcCCCCEEEEEeCcCCCCHHHHHHH
Confidence 3444444544233345667789999999998864
No 310
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=26.99 E-value=46 Score=27.17 Aligned_cols=32 Identities=25% Similarity=0.172 Sum_probs=20.9
Q ss_pred cchhHHHHHHHhhhcCCCeEEEEEEcCCCCcHHHHhc
Q 047923 152 RESRVEIIESLLAAESKDVYILGIWGVGSIGKTTIAR 188 (190)
Q Consensus 152 ~d~~~~~~~~~l~~~~~~~~vi~i~G~gGiGKTTla~ 188 (190)
++.+.+.+..++... + .-+++--|.|||..|-
T Consensus 95 ~~~Q~~ai~~i~~~~----~-~ll~~~TGsGKT~~~l 126 (472)
T 2fwr_A 95 RDYQEKALERWLVDK----R-GCIVLPTGSGKTHVAM 126 (472)
T ss_dssp CHHHHHHHHHHTTTT----E-EEEECCTTSCHHHHHH
T ss_pred CHHHHHHHHHHHhcC----C-EEEEeCCCCCHHHHHH
Confidence 445555666555432 1 5567999999998763
No 311
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=26.99 E-value=54 Score=25.21 Aligned_cols=15 Identities=20% Similarity=0.020 Sum_probs=12.2
Q ss_pred EEEEcCCCCcHHHHh
Q 047923 173 LGIWGVGSIGKTTIA 187 (190)
Q Consensus 173 i~i~G~gGiGKTTla 187 (190)
+-+.+..|.|||+.+
T Consensus 47 ~l~~~~TGsGKT~~~ 61 (367)
T 1hv8_A 47 IVAQARTGSGKTASF 61 (367)
T ss_dssp EEEECCSSSSHHHHH
T ss_pred EEEECCCCChHHHHH
Confidence 456799999999875
No 312
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=25.84 E-value=38 Score=29.76 Aligned_cols=18 Identities=33% Similarity=0.102 Sum_probs=15.4
Q ss_pred eEEEEEEcCCCCcHHHHh
Q 047923 170 VYILGIWGVGSIGKTTIA 187 (190)
Q Consensus 170 ~~vi~i~G~gGiGKTTla 187 (190)
-+.+-+.|-.|.|||+.|
T Consensus 155 rk~vlv~apTGSGKT~~a 172 (677)
T 3rc3_A 155 RKIIFHSGPTNSGKTYHA 172 (677)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred CCEEEEEcCCCCCHHHHH
Confidence 467889999999999965
No 313
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=25.26 E-value=22 Score=37.11 Aligned_cols=16 Identities=31% Similarity=0.486 Sum_probs=14.0
Q ss_pred EEEcCCCCcHHHHhcc
Q 047923 174 GIWGVGSIGKTTIARA 189 (190)
Q Consensus 174 ~i~G~gGiGKTTla~~ 189 (190)
.+.|.+|.|||++++.
T Consensus 608 ~~~GPaGtGKTet~k~ 623 (3245)
T 3vkg_A 608 NPFGPAGTGKTETVKA 623 (3245)
T ss_dssp EEECSTTSSHHHHHHH
T ss_pred CCCCCCCCCHHHHHHH
Confidence 4789999999999874
No 314
>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A
Probab=24.75 E-value=19 Score=23.05 Aligned_cols=29 Identities=21% Similarity=0.340 Sum_probs=17.0
Q ss_pred hcccceEEEecCCCcCchhhHHHHHHHHH
Q 047923 28 ESPAISVIIFSEGYPFSRWCLHELVKILK 56 (190)
Q Consensus 28 ~~s~~~ivv~S~~y~~S~wcl~El~~i~~ 56 (190)
=++.++++|||++=--..||--.+..+++
T Consensus 38 Cda~Valiifs~~gk~~~f~s~~~~~il~ 66 (90)
T 3p57_A 38 CDCEIALIIFNSSNKLFQYASTDMDKVLL 66 (90)
T ss_dssp HTCEEEEEEECTTCCEEEEESSCHHHHHH
T ss_pred cCCceEEEEECCCCCEEEeCCCCHHHHHH
Confidence 37889999999973333333223334444
No 315
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=24.74 E-value=74 Score=24.97 Aligned_cols=15 Identities=20% Similarity=0.109 Sum_probs=12.0
Q ss_pred EEEEcCCCCcHHHHh
Q 047923 173 LGIWGVGSIGKTTIA 187 (190)
Q Consensus 173 i~i~G~gGiGKTTla 187 (190)
+-+.+..|.|||+.+
T Consensus 61 ~li~a~TGsGKT~~~ 75 (400)
T 1s2m_A 61 ILARAKNGTGKTAAF 75 (400)
T ss_dssp EEEECCTTSCHHHHH
T ss_pred EEEECCCCcHHHHHH
Confidence 456789999999754
No 316
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=24.67 E-value=26 Score=26.51 Aligned_cols=32 Identities=13% Similarity=-0.070 Sum_probs=20.5
Q ss_pred cchhHHHHHHHhhhcCCCeEEEEEEcCCCCcHHHHhc
Q 047923 152 RESRVEIIESLLAAESKDVYILGIWGVGSIGKTTIAR 188 (190)
Q Consensus 152 ~d~~~~~~~~~l~~~~~~~~vi~i~G~gGiGKTTla~ 188 (190)
++.+.+.+..++... -. -+.+-.|.|||..|-
T Consensus 115 ~~~Q~~ai~~~l~~~---~~--ll~~~tGsGKT~~~~ 146 (282)
T 1rif_A 115 HWYQKDAVFEGLVNR---RR--ILNLPTSAGRSLIQA 146 (282)
T ss_dssp CHHHHHHHHHHHHHS---EE--EECCCTTSCHHHHHH
T ss_pred cHHHHHHHHHHHhcC---Ce--EEEcCCCCCcHHHHH
Confidence 444566666566542 12 248999999999873
No 317
>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1
Probab=24.43 E-value=18 Score=28.83 Aligned_cols=15 Identities=33% Similarity=0.753 Sum_probs=13.0
Q ss_pred EEEEEEcCCCCcHHH
Q 047923 171 YILGIWGVGSIGKTT 185 (190)
Q Consensus 171 ~vi~i~G~gGiGKTT 185 (190)
+.+||+|+|.||+..
T Consensus 146 ~~vgIiG~G~IG~~~ 160 (333)
T 1dxy_A 146 QTVGVMGTGHIGQVA 160 (333)
T ss_dssp SEEEEECCSHHHHHH
T ss_pred CEEEEECcCHHHHHH
Confidence 469999999999875
No 318
>2vos_A Folylpolyglutamate synthase protein FOLC; ligase, peptidoglycan synthesis, cell division; HET: ADP; 2.0A {Mycobacterium tuberculosis} PDB: 2vor_A*
Probab=24.27 E-value=35 Score=28.59 Aligned_cols=33 Identities=30% Similarity=0.477 Sum_probs=21.2
Q ss_pred hHHHHHHHhhhcCCCeEEEEEEcCCCCcHHHHhcc
Q 047923 155 RVEIIESLLAAESKDVYILGIWGVGSIGKTTIARA 189 (190)
Q Consensus 155 ~~~~~~~~l~~~~~~~~vi~i~G~gGiGKTTla~~ 189 (190)
+++.+.+.|.......++|+|-|-. ||||.+..
T Consensus 49 r~~~ll~~lg~p~~~~~vI~VtGTN--GKtST~~~ 81 (487)
T 2vos_A 49 RISALMDLLGSPQRSYPSIHIAGTN--GKTSVARM 81 (487)
T ss_dssp HHHHHHHHTTCGGGSSCEEEEECSS--SHHHHHHH
T ss_pred HHHHHHHHcCCchhcCeEEEEeCCC--CcHHHHHH
Confidence 4444555454333457899998885 79997753
No 319
>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum}
Probab=23.63 E-value=17 Score=29.20 Aligned_cols=15 Identities=47% Similarity=0.864 Sum_probs=13.1
Q ss_pred EEEEEEcCCCCcHHH
Q 047923 171 YILGIWGVGSIGKTT 185 (190)
Q Consensus 171 ~vi~i~G~gGiGKTT 185 (190)
+.+||+|+|.||+..
T Consensus 161 ~tvGIIGlG~IG~~v 175 (352)
T 3gg9_A 161 QTLGIFGYGKIGQLV 175 (352)
T ss_dssp CEEEEECCSHHHHHH
T ss_pred CEEEEEeECHHHHHH
Confidence 469999999999875
No 320
>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}
Probab=23.37 E-value=19 Score=28.76 Aligned_cols=15 Identities=47% Similarity=0.871 Sum_probs=13.0
Q ss_pred EEEEEEcCCCCcHHH
Q 047923 171 YILGIWGVGSIGKTT 185 (190)
Q Consensus 171 ~vi~i~G~gGiGKTT 185 (190)
+.+||+|+|.||+..
T Consensus 166 ~tvgIIGlG~IG~~v 180 (335)
T 2g76_A 166 KTLGILGLGRIGREV 180 (335)
T ss_dssp CEEEEECCSHHHHHH
T ss_pred CEEEEEeECHHHHHH
Confidence 469999999999874
No 321
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=23.12 E-value=64 Score=26.57 Aligned_cols=32 Identities=13% Similarity=-0.078 Sum_probs=21.5
Q ss_pred cchhHHHHHHHhhhcCCCeEEEEEEcCCCCcHHHHhc
Q 047923 152 RESRVEIIESLLAAESKDVYILGIWGVGSIGKTTIAR 188 (190)
Q Consensus 152 ~d~~~~~~~~~l~~~~~~~~vi~i~G~gGiGKTTla~ 188 (190)
++.+.+.+..++... -.-++|--|.|||..|-
T Consensus 115 ~~~Q~~ai~~~~~~~-----~~ll~~~tGsGKT~~~~ 146 (510)
T 2oca_A 115 HWYQKDAVFEGLVNR-----RRILNLPTSAGRSLIQA 146 (510)
T ss_dssp CHHHHHHHHHHHHHS-----EEEEECCSTTTHHHHHH
T ss_pred CHHHHHHHHHHHhcC-----CcEEEeCCCCCHHHHHH
Confidence 445566666666431 24578999999999863
No 322
>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1
Probab=23.08 E-value=38 Score=21.64 Aligned_cols=37 Identities=19% Similarity=0.344 Sum_probs=20.2
Q ss_pred cchHHHHHHhhcccceEEEecCCCcCchhhH--HHHHHHHH
Q 047923 18 EISESIAYAIESPAISVIIFSEGYPFSRWCL--HELVKILK 56 (190)
Q Consensus 18 ~~~~~l~~ai~~s~~~ivv~S~~y~~S~wcl--~El~~i~~ 56 (190)
++...+.+.|...+ |+||+......+||- .....+++
T Consensus 3 ~~~~~~~~~i~~~~--vvvy~~g~~~~~~Cp~C~~ak~~L~ 41 (109)
T 1wik_A 3 SGSSGLKVLTNKAS--VMLFMKGNKQEAKCGFSKQILEILN 41 (109)
T ss_dssp SSCCCHHHHHTTSS--EEEEESSTTTCCCSSTHHHHHHHHH
T ss_pred hHHHHHHHHhccCC--EEEEEecCCCCCCCchHHHHHHHHH
Confidence 34445666776665 678887544334553 23444554
No 323
>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}
Probab=22.76 E-value=18 Score=28.40 Aligned_cols=15 Identities=40% Similarity=0.711 Sum_probs=13.0
Q ss_pred EEEEEEcCCCCcHHH
Q 047923 171 YILGIWGVGSIGKTT 185 (190)
Q Consensus 171 ~vi~i~G~gGiGKTT 185 (190)
..+||+|+|.+|+..
T Consensus 143 ~~vgIIG~G~IG~~~ 157 (313)
T 2ekl_A 143 KTIGIVGFGRIGTKV 157 (313)
T ss_dssp CEEEEESCSHHHHHH
T ss_pred CEEEEEeeCHHHHHH
Confidence 469999999999875
No 324
>2pjx_C Syntaxin-4; membrane trafficking, SM protein, snare proteins, endocytosis/exocytosis complex; 3.15A {Mus musculus}
Probab=22.60 E-value=29 Score=16.52 Aligned_cols=23 Identities=26% Similarity=0.598 Sum_probs=16.0
Q ss_pred CCCCcccchHHHHHHhhcccceEEEec
Q 047923 12 QLNRGDEISESIAYAIESPAISVIIFS 38 (190)
Q Consensus 12 ~~~~g~~~~~~l~~ai~~s~~~ivv~S 38 (190)
+++.|++|++.- .+-++++||-|
T Consensus 7 elrqgdnisdde----devrvalvvhs 29 (29)
T 2pjx_C 7 ELRQGDNISDDE----DEVRVALVVHS 29 (29)
T ss_pred hhhcCCCCCCcc----ceeEEEEEeeC
Confidence 677888886542 45778888754
No 325
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=21.72 E-value=48 Score=24.08 Aligned_cols=15 Identities=20% Similarity=-0.141 Sum_probs=11.9
Q ss_pred EEEEcCCCCcHHHHh
Q 047923 173 LGIWGVGSIGKTTIA 187 (190)
Q Consensus 173 i~i~G~gGiGKTTla 187 (190)
+-+.+-.|.|||+.+
T Consensus 65 ~li~a~TGsGKT~~~ 79 (236)
T 2pl3_A 65 VLGAAKTGSGKTLAF 79 (236)
T ss_dssp EEEECCTTSCHHHHH
T ss_pred EEEEeCCCCcHHHHH
Confidence 456789999999853
No 326
>3ro3_B Minsc, peptide of protein inscuteable homolog; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=21.51 E-value=62 Score=14.63 Aligned_cols=12 Identities=25% Similarity=0.537 Sum_probs=9.1
Q ss_pred HHHHhHHHHHHH
Q 047923 100 EKLQSWRNATKE 111 (190)
Q Consensus 100 e~v~kWr~AL~e 111 (190)
|.+++|.+.|.-
T Consensus 8 DSV~rWmeDLr~ 19 (22)
T 3ro3_B 8 DSVQRWMEDLKL 19 (26)
T ss_pred HHHHHHHHHHHh
Confidence 458999987753
No 327
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=21.41 E-value=56 Score=27.64 Aligned_cols=38 Identities=18% Similarity=0.008 Sum_probs=21.8
Q ss_pred ccccchhHHHHHHHhhh-cCCCeEEEEEEcCCCCcHHHHh
Q 047923 149 LVGRESRVEIIESLLAA-ESKDVYILGIWGVGSIGKTTIA 187 (190)
Q Consensus 149 ~vG~d~~~~~~~~~l~~-~~~~~~vi~i~G~gGiGKTTla 187 (190)
..-+..+.+.+..++.. ...+-+ +-+++--|.|||..|
T Consensus 177 ~~lr~~Q~~ai~~~~~~~~~~~~~-~ll~~~TGsGKT~~~ 215 (590)
T 3h1t_A 177 YSPRYYQQIAINRAVQSVLQGKKR-SLITMATGTGKTVVA 215 (590)
T ss_dssp --CCHHHHHHHHHHHHHHHTTCSE-EEEEECTTSCHHHHH
T ss_pred CCchHHHHHHHHHHHHHHhcCCCc-eEEEecCCCChHHHH
Confidence 44566666666665542 111222 345678899999875
No 328
>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}
Probab=21.37 E-value=20 Score=28.05 Aligned_cols=15 Identities=40% Similarity=0.678 Sum_probs=12.9
Q ss_pred EEEEEEcCCCCcHHH
Q 047923 171 YILGIWGVGSIGKTT 185 (190)
Q Consensus 171 ~vi~i~G~gGiGKTT 185 (190)
+.+||+|+|.||+..
T Consensus 143 ~~vgIiG~G~IG~~~ 157 (307)
T 1wwk_A 143 KTIGIIGFGRIGYQV 157 (307)
T ss_dssp CEEEEECCSHHHHHH
T ss_pred ceEEEEccCHHHHHH
Confidence 469999999999864
No 329
>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}
Probab=20.89 E-value=22 Score=27.40 Aligned_cols=17 Identities=18% Similarity=0.450 Sum_probs=14.0
Q ss_pred EEEEEEcCCCCcHHHHh
Q 047923 171 YILGIWGVGSIGKTTIA 187 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTla 187 (190)
..++|+|+|++|+....
T Consensus 156 ~~v~IiG~G~iG~~~a~ 172 (293)
T 3d4o_A 156 ANVAVLGLGRVGMSVAR 172 (293)
T ss_dssp CEEEEECCSHHHHHHHH
T ss_pred CEEEEEeeCHHHHHHHH
Confidence 46899999999997643
No 330
>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1
Probab=20.83 E-value=21 Score=28.13 Aligned_cols=16 Identities=50% Similarity=0.877 Sum_probs=13.4
Q ss_pred EEEEEEcCCCCcHHHH
Q 047923 171 YILGIWGVGSIGKTTI 186 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTl 186 (190)
+.+||+|+|.||+...
T Consensus 147 ~~vgIIG~G~IG~~~A 162 (320)
T 1gdh_A 147 KTLGIYGFGSIGQALA 162 (320)
T ss_dssp CEEEEECCSHHHHHHH
T ss_pred CEEEEECcCHHHHHHH
Confidence 4699999999998753
No 331
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=20.46 E-value=47 Score=28.92 Aligned_cols=16 Identities=38% Similarity=0.268 Sum_probs=13.5
Q ss_pred EEEEcCCCCcHHHHhc
Q 047923 173 LGIWGVGSIGKTTIAR 188 (190)
Q Consensus 173 i~i~G~gGiGKTTla~ 188 (190)
+-+.|-.|.|||+.|.
T Consensus 49 ~lv~apTGsGKT~~~~ 64 (715)
T 2va8_A 49 LLLTSPTGSGKTLIAE 64 (715)
T ss_dssp EEEECCTTSCHHHHHH
T ss_pred EEEEcCCCCcHHHHHH
Confidence 5578999999999873
No 332
>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*
Probab=20.35 E-value=25 Score=27.87 Aligned_cols=15 Identities=33% Similarity=0.738 Sum_probs=12.9
Q ss_pred EEEEEEcCCCCcHHH
Q 047923 171 YILGIWGVGSIGKTT 185 (190)
Q Consensus 171 ~vi~i~G~gGiGKTT 185 (190)
+.+||+|+|.||+..
T Consensus 147 ~~vgIiG~G~IG~~~ 161 (333)
T 1j4a_A 147 QVVGVVGTGHIGQVF 161 (333)
T ss_dssp SEEEEECCSHHHHHH
T ss_pred CEEEEEccCHHHHHH
Confidence 469999999999864
No 333
>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1
Probab=20.32 E-value=29 Score=27.12 Aligned_cols=15 Identities=27% Similarity=0.570 Sum_probs=12.9
Q ss_pred EEEEEEcCCCCcHHH
Q 047923 171 YILGIWGVGSIGKTT 185 (190)
Q Consensus 171 ~vi~i~G~gGiGKTT 185 (190)
+.+||+|+|.||+..
T Consensus 125 ~~vgIIG~G~IG~~~ 139 (303)
T 1qp8_A 125 EKVAVLGLGEIGTRV 139 (303)
T ss_dssp CEEEEESCSTHHHHH
T ss_pred CEEEEEccCHHHHHH
Confidence 469999999999974
No 334
>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}
Probab=20.28 E-value=21 Score=27.88 Aligned_cols=15 Identities=47% Similarity=0.813 Sum_probs=12.9
Q ss_pred EEEEEEcCCCCcHHH
Q 047923 171 YILGIWGVGSIGKTT 185 (190)
Q Consensus 171 ~vi~i~G~gGiGKTT 185 (190)
+.+||+|+|.||+..
T Consensus 123 ~tvGIIGlG~IG~~v 137 (290)
T 3gvx_A 123 KALGILGYGGIGRRV 137 (290)
T ss_dssp CEEEEECCSHHHHHH
T ss_pred chheeeccCchhHHH
Confidence 469999999999864
No 335
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=20.27 E-value=49 Score=23.33 Aligned_cols=15 Identities=13% Similarity=0.051 Sum_probs=11.8
Q ss_pred EEEEcCCCCcHHHHh
Q 047923 173 LGIWGVGSIGKTTIA 187 (190)
Q Consensus 173 i~i~G~gGiGKTTla 187 (190)
+-+.+-.|.|||..+
T Consensus 43 ~lv~apTGsGKT~~~ 57 (206)
T 1vec_A 43 ILARAKNGTGKSGAY 57 (206)
T ss_dssp EEEECCSSSTTHHHH
T ss_pred EEEECCCCCchHHHH
Confidence 557789999999643
No 336
>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}
Probab=20.10 E-value=24 Score=28.31 Aligned_cols=16 Identities=44% Similarity=0.856 Sum_probs=13.5
Q ss_pred EEEEEEcCCCCcHHHH
Q 047923 171 YILGIWGVGSIGKTTI 186 (190)
Q Consensus 171 ~vi~i~G~gGiGKTTl 186 (190)
+.+||+|+|.||+..-
T Consensus 174 ktvGIIGlG~IG~~vA 189 (345)
T 4g2n_A 174 RRLGIFGMGRIGRAIA 189 (345)
T ss_dssp CEEEEESCSHHHHHHH
T ss_pred CEEEEEEeChhHHHHH
Confidence 4799999999998743
Done!