Query 047926
Match_columns 96
No_of_seqs 96 out of 108
Neff 2.5
Searched_HMMs 29240
Date Mon Mar 25 07:34:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047926.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047926hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2rrh_A VIP peptides; peptide h 35.8 26 0.0009 18.9 2.2 22 60-81 4-25 (29)
2 1gea_A Pituitary adenylate cyc 25.9 26 0.00088 18.8 1.0 20 60-79 4-23 (26)
3 1pcf_A P15, transcriptional co 25.0 13 0.00046 23.3 -0.3 13 19-31 26-40 (66)
4 2d2p_A Pituitary adenylate cyc 23.8 53 0.0018 18.8 2.2 22 60-81 4-25 (39)
5 2ys2_A Cytoplasmic tyrosine-pr 18.3 27 0.00093 20.9 0.1 13 15-27 14-26 (50)
6 1jrj_A Exendin-4; Trp-CAGE, GL 17.6 1.1E+02 0.0038 17.7 2.7 22 60-81 4-25 (39)
7 2g49_C Glucagon preproprotein; 16.6 1.2E+02 0.0039 16.5 2.4 22 60-81 4-25 (29)
8 2e6i_A Tyrosine-protein kinase 16.0 37 0.0013 21.3 0.4 11 17-27 16-26 (64)
9 1d9j_A Cecropin A-magainin 2 h 14.4 36 0.0012 18.5 -0.0 10 25-34 1-10 (26)
10 1wq6_A AML1-ETO; NHR2, oncopro 13.2 1.4E+02 0.0049 19.4 2.6 20 66-85 33-52 (72)
No 1
>2rrh_A VIP peptides; peptide hormone, hormone; NMR {Homo sapiens} PDB: 2rri_A
Probab=35.81 E-value=26 Score=18.87 Aligned_cols=22 Identities=18% Similarity=0.392 Sum_probs=18.5
Q ss_pred cchhhHHHHHHHhhhhhhHHHH
Q 047926 60 CSFSRKCARLVREQRARFYIMR 81 (96)
Q Consensus 60 ~sf~~rc~~~vKEQRaRlYIiR 81 (96)
..|+.-..+++++++++-||-+
T Consensus 4 g~FTsdysk~l~~~~ak~fl~~ 25 (29)
T 2rrh_A 4 AVFTDNYTRLRKQMAVKKYLNS 25 (29)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHHH
Confidence 3588889999999999998753
No 2
>1gea_A Pituitary adenylate cyclase activating polypeptide; beta coil, consecutive beta turns, type-II beta turn, type- I beta turn, helix, neuropeptide; HET: LYN; NMR {Synthetic} SCOP: j.81.1.1
Probab=25.94 E-value=26 Score=18.80 Aligned_cols=20 Identities=10% Similarity=0.212 Sum_probs=15.6
Q ss_pred cchhhHHHHHHHhhhhhhHH
Q 047926 60 CSFSRKCARLVREQRARFYI 79 (96)
Q Consensus 60 ~sf~~rc~~~vKEQRaRlYI 79 (96)
..|+.-.+++++++|++-||
T Consensus 4 g~FTsdySry~~~~~~q~fl 23 (26)
T 1gea_A 4 GIFTDSYSRYRKQMAVKXXX 23 (26)
T ss_dssp SSSSSHHHHHHHHHHHCC--
T ss_pred ccchhHHHHHHHHHHHHhcc
Confidence 45888889999999999887
No 3
>1pcf_A P15, transcriptional coactivator PC4; transcriptional cofactor, ssDNA binding, nuclear protein; 1.74A {Homo sapiens} SCOP: d.18.1.1 PDB: 2c62_A 2phe_A
Probab=25.03 E-value=13 Score=23.30 Aligned_cols=13 Identities=23% Similarity=0.641 Sum_probs=10.5
Q ss_pred ccccc--hhhccccc
Q 047926 19 QFYLD--EKWKLSKK 31 (96)
Q Consensus 19 ~~y~D--eKWKlSKK 31 (96)
|+|+| |+|+.+||
T Consensus 26 e~Y~~kdG~~~PgkK 40 (66)
T 1pcf_A 26 EYWMDPEGEMKPGRK 40 (66)
T ss_dssp EEEECTTSCEEEEEE
T ss_pred EEEECCCCcCCCCcc
Confidence 56754 89999999
No 4
>2d2p_A Pituitary adenylate cyclase activating polypeptide-38; hormone/growth factor complex; NMR {Homo sapiens} PDB: 2jod_B
Probab=23.79 E-value=53 Score=18.84 Aligned_cols=22 Identities=14% Similarity=0.295 Sum_probs=19.0
Q ss_pred cchhhHHHHHHHhhhhhhHHHH
Q 047926 60 CSFSRKCARLVREQRARFYIMR 81 (96)
Q Consensus 60 ~sf~~rc~~~vKEQRaRlYIiR 81 (96)
..|+.-..+++++++++-||-+
T Consensus 4 g~FTs~yskyl~~~~ak~fl~~ 25 (39)
T 2d2p_A 4 GIFTDSYSRYRKQMAVKKYLAA 25 (39)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHH
Confidence 4588999999999999999854
No 5
>2ys2_A Cytoplasmic tyrosine-protein kinase BMX; bone marrow tyrosine kinase gene in chromosome X protein, epithelial and endothelial tyrosine kinase, ETK; NMR {Homo sapiens}
Probab=18.26 E-value=27 Score=20.95 Aligned_cols=13 Identities=23% Similarity=0.480 Sum_probs=10.5
Q ss_pred CCCCccccchhhc
Q 047926 15 SAPPQFYLDEKWK 27 (96)
Q Consensus 15 ~~~p~~y~DeKWK 27 (96)
.--|-+|++++|.
T Consensus 14 ~YHPg~~~~g~W~ 26 (50)
T 2ys2_A 14 KYHSGFFVDGKFL 26 (50)
T ss_dssp CCCSSCEETTEES
T ss_pred hcCCCcccCCeEC
Confidence 3458899999994
No 6
>1jrj_A Exendin-4; Trp-CAGE, GLP-1, poly-proii, hydrophobic cluster, hormone/growth factor complex; NMR {Synthetic} SCOP: j.6.1.1
Probab=17.58 E-value=1.1e+02 Score=17.68 Aligned_cols=22 Identities=18% Similarity=0.425 Sum_probs=18.8
Q ss_pred cchhhHHHHHHHhhhhhhHHHH
Q 047926 60 CSFSRKCARLVREQRARFYIMR 81 (96)
Q Consensus 60 ~sf~~rc~~~vKEQRaRlYIiR 81 (96)
..|+.-..++++++.++=||-+
T Consensus 4 GtFTsdyS~~l~~~aak~fv~w 25 (39)
T 1jrj_A 4 GTFTSDLSKQMEEEAVRLFIEW 25 (39)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHH
Confidence 4689999999999999988754
No 7
>2g49_C Glucagon preproprotein; protein-peptide complex, hydrolase; 2.50A {Homo sapiens} PDB: 1kx6_A 1gcn_A 1bh0_A 1nau_A
Probab=16.58 E-value=1.2e+02 Score=16.51 Aligned_cols=22 Identities=14% Similarity=0.373 Sum_probs=18.7
Q ss_pred cchhhHHHHHHHhhhhhhHHHH
Q 047926 60 CSFSRKCARLVREQRARFYIMR 81 (96)
Q Consensus 60 ~sf~~rc~~~vKEQRaRlYIiR 81 (96)
..|+.-..+++.++.++=||-+
T Consensus 4 GtFTsdysk~l~~~aak~fv~w 25 (29)
T 2g49_C 4 GTFTSDYSKYLDSRRAQDFVQW 25 (29)
T ss_pred ccchHHHHHHHHHHHHHHHHHH
Confidence 4688999999999999988754
No 8
>2e6i_A Tyrosine-protein kinase ITK/TSK; BTK, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=16.02 E-value=37 Score=21.30 Aligned_cols=11 Identities=45% Similarity=1.365 Sum_probs=9.4
Q ss_pred CCccccchhhc
Q 047926 17 PPQFYLDEKWK 27 (96)
Q Consensus 17 ~p~~y~DeKWK 27 (96)
-|-+|++++|.
T Consensus 16 HPg~~~~GkW~ 26 (64)
T 2e6i_A 16 HPNFWMDGKWR 26 (64)
T ss_dssp CSSCBCSSSBS
T ss_pred CCCceeCCeEC
Confidence 47899999994
No 9
>1d9j_A Cecropin A-magainin 2 hybrid peptide; helix-hinge-helix, antimicrobial protein; NMR {Synthetic} SCOP: j.4.1.1 PDB: 1f0d_A 1d9p_A 1f0g_A 1d9o_A 1f0h_A
Probab=14.37 E-value=36 Score=18.46 Aligned_cols=10 Identities=70% Similarity=1.009 Sum_probs=8.1
Q ss_pred hhccccccCC
Q 047926 25 KWKLSKKEGS 34 (96)
Q Consensus 25 KWKlSKKeg~ 34 (96)
||||=||-|-
T Consensus 1 kwklfkkigi 10 (26)
T 1d9j_A 1 KWKLFKKIGI 10 (26)
T ss_pred CccHHhhhch
Confidence 7999998773
No 10
>1wq6_A AML1-ETO; NHR2, oncoprotein; 2.00A {Homo sapiens}
Probab=13.24 E-value=1.4e+02 Score=19.45 Aligned_cols=20 Identities=25% Similarity=0.582 Sum_probs=15.2
Q ss_pred HHHHHHhhhhhhHHHHHHHH
Q 047926 66 CARLVREQRARFYIMRRCVT 85 (96)
Q Consensus 66 c~~~vKEQRaRlYIiRRCv~ 85 (96)
...+|..-|--+-|+|||.-
T Consensus 33 I~~MVEKTrRsltvLrRcQe 52 (72)
T 1wq6_A 33 IMDMVEKTRRSLTVLRRCQE 52 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34677778888888888876
Done!