BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047927
(1005 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 156 bits (395), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 199/738 (26%), Positives = 305/738 (41%), Gaps = 114/738 (15%)
Query: 271 NELLQGSLPDFHQNLSLETLILSATNFSGILPDSIKNLKNLSRVEFY-----LCNFNGPI 325
N + GS+ F + SL +L LS + SG + ++ +L + S ++F +F G +
Sbjct: 86 NSHINGSVSGFKCSASLTSLDLSRNSLSGPV-TTLTSLGSCSGLKFLNVSSNTLDFPGKV 144
Query: 326 PTSMSDLSQLVYLDMSFNHFSGPIPSLHMFRN----LAYLDLSYNIFTGGISSIGWEQLL 381
+ L+ L LD+S N SG + + L +L +S N +G + + +
Sbjct: 145 SGGLK-LNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD---VSRCV 200
Query: 382 NLFHVDLSHNNLGGSIPQSLFELPMVQHLLLADNQFDGHVTEIXXXXXXXXXXXXXXXXX 441
NL +D+S NN IP L + +QHL ++ N+ G +
Sbjct: 201 NLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSR------------------ 241
Query: 442 XEGPIPLSFFEXXXXXXXXXXXXXFVGTIELDAIQRLRNLFRLDLSYNRLAVVAGSSVYC 501
AI L L++S N+ V
Sbjct: 242 --------------------------------AISTCTELKLLNISSNQF-------VGP 262
Query: 502 FPPL----LTTLSLASCKLSA-IPNLRKQT--KLYHLDLSDNQISGEIPNWLWKIGKDSF 554
PPL L LSLA K + IP+ L LDLS N G +P + G S
Sbjct: 263 IPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFF---GSCSL 319
Query: 555 XXXXXXXXXXXXXEQPY-SISDLTSLSVLDLHSNQIQGKIPP----LPPNAAYVDYSGNN 609
E P ++ + L VLDL N+ G++P L + +D S NN
Sbjct: 320 LESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNN 379
Query: 610 FTSSI-PVDIGXXXXXXXXXXXXKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLI 668
F+ I P N TG IP ++ N + L+ L LS+NYLSG IP+ L
Sbjct: 380 FSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLG 439
Query: 669 NMSDSQXXXXXXXXXXXXXTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDL 728
++S + + +L TL L+ N L G +P L+NC+ L + L
Sbjct: 440 SLSKLRDLKLWLNMLEGEIPQELMYVK--TLETLILDFNDLTGEIPSGLSNCTNLNWISL 497
Query: 729 GNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLP 788
NN+ P W+ L +L L +N+F GNI P L +DL +N F+G +P
Sbjct: 498 SNNRLTGEIPKWIGRLENLAILKLSNNSFSGNI--PAELGDCRSLIWLDLNTNLFNGTIP 555
Query: 789 -----------------QKWLLNLEAMMVDEGRSQSELKHLQ-YRFLNLSQAYYQDAITV 830
++++ M E L Q R L++ ++ +
Sbjct: 556 AAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNI 615
Query: 831 TIKGLEMKLAKILNIFTS---IDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSL 887
T + + + S +D S N G IP+E+G + L LNL HN ++GSIP
Sbjct: 616 TSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDE 675
Query: 888 IGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLNLSYNHLVGRIPTSTQLQSFLATSFE 947
+G+LR + LDLS N L G IP +++L L+ ++LS N+L G IP Q ++F F
Sbjct: 676 VGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFL 735
Query: 948 GNDRLWGPPLNVC-PTNS 964
N L G PL C P+N+
Sbjct: 736 NNPGLCGYPLPRCDPSNA 753
Score = 112 bits (279), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 175/661 (26%), Positives = 253/661 (38%), Gaps = 124/661 (18%)
Query: 214 SLSVIRLDMNDLYSPVPEF--LADFSNLTSLYLSSCGLHGAFPEKI---LQLPTLETLDL 268
SL+ + L N L PV L S L L +SS L FP K+ L+L +LE LDL
Sbjct: 101 SLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD--FPGKVSGGLKLNSLEVLDL 158
Query: 269 SYNELLQGSLPDFHQNLSLETLILSATNFSG-ILPDSIKNLKNLSRVEFYLCNFNGPIPT 327
S N + S N G +L D LK+L+ +G +
Sbjct: 159 SANSI-------------------SGANVVGWVLSDGCGELKHLA--------ISGNKIS 191
Query: 328 SMSDLSQLV---YLDMSFNHFSGPIPSLHMFRNLAYLDLSYNIFTG----GISSIGWEQL 380
D+S+ V +LD+S N+FS IP L L +LD+S N +G IS+ +L
Sbjct: 192 GDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKL 251
Query: 381 LNLFHVDLSHNNLGGSIPQSLFELPMVQHLLLADNQFDGHVTEIXXXXXXXXXXXXXXXX 440
LN +S N G IP L +Q+L LA+N+F G + +
Sbjct: 252 LN-----ISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGN 304
Query: 441 XXEGPIPLSFFEXXXXXXXXXXXXXFVGTIELDAIQRLRNLFRLDLSYNRLAVVAGSSVY 500
G +P F F G + +D + ++R L LDLS+N + S+
Sbjct: 305 HFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLT 364
Query: 501 CFPPLLTTLSLASCKLSA--IPNLRKQTK--LYHLDLSDNQISGEIP------------- 543
L TL L+S S +PNL + K L L L +N +G+IP
Sbjct: 365 NLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLH 424
Query: 544 ---NWL-----WKIGKDSFXXXXXXXXXXXXXEQPYSISDLTSLSVLDLHSNQIQGKIPP 595
N+L +G S E P + + +L L L N + G+IP
Sbjct: 425 LSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPS 484
Query: 596 LPPNAA---YVDYSGNNFTSSIPVDIGXXXXXXXXXXXXKNSLTGVIPESICNATNLLVL 652
N ++ S N T IP IG NS +G IP + + +L+ L
Sbjct: 485 GLSNCTNLNWISLSNNRLTGEIPKWIG-RLENLAILKLSNNSFSGNIPAELGDCRSLIWL 543
Query: 653 DLSYNYLSGMIPTCLINMSD---------------------------SQXXXXXXXXXXX 685
DL+ N +G IP + S
Sbjct: 544 DLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQ 603
Query: 686 XXTVSATFPANCSLR--------TLDLNG---------NQLEGMVPKSLANCSVLEILDL 728
+S P N + R T D NG N L G +PK + + L IL+L
Sbjct: 604 LNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNL 663
Query: 729 GNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLP 788
G+N + P V + L++L L SN G I P+ + ML IDL++N SG +P
Sbjct: 664 GHNDISGSIPDEVGDLRGLNILDLSSNKLDGRI--PQAMSALTMLTEIDLSNNNLSGPIP 721
Query: 789 Q 789
+
Sbjct: 722 E 722
Score = 107 bits (267), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 178/673 (26%), Positives = 258/673 (38%), Gaps = 148/673 (21%)
Query: 46 SGVDCDEAGRVIGLDLSEESISAGIDNSSSLFSLKYLQSLNLAFNMFNATEIPXXXXXXX 105
SG C + + LDLS S+S + +SL S L+ LN++ N +
Sbjct: 94 SGFKC--SASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD------------ 139
Query: 106 XXXXXXXXXAGFAGQIPIQVSG---MTRLVTLDLSGMYFVRAPLKLENPNLSG--LLQNL 160
P +VSG + L LDLS A N+ G L
Sbjct: 140 ---------------FPGKVSGGLKLNSLEVLDLSANSISGA-------NVVGWVLSDGC 177
Query: 161 AELRELYLDGVNISAP-GIEWCQAL----------SSLVP------KLQVLSLSGCFLSG 203
EL+ L + G IS + C L S+ +P LQ L +SG LSG
Sbjct: 178 GELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSG 237
Query: 204 PVDPSLSN----------------------LRSLSVIRLDMNDLYSPVPEFLADFSN-LT 240
++S L+SL + L N +P+FL+ + LT
Sbjct: 238 DFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLT 297
Query: 241 SLYLSSCGLHGAFP-------------------------EKILQLPTLETLDLSYNELLQ 275
L LS +GA P + +L++ L+ LDLS+NE
Sbjct: 298 GLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNE-FS 356
Query: 276 GSLPDFHQNL--SLETLILSATNFSG-ILPDSIKNLKNLSRVEFYLCN--FNGPIPTSMS 330
G LP+ NL SL TL LS+ NFSG ILP+ +N KN + E YL N F G IP ++S
Sbjct: 357 GELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKN-TLQELYLQNNGFTGKIPPTLS 415
Query: 331 DLSQLVYLDMSFNHFSGPIPS-------------------------LHMFRNLAYLDLSY 365
+ S+LV L +SFN+ SG IPS L + L L L +
Sbjct: 416 NCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDF 475
Query: 366 NIFTGGISSIGWEQLLNLFHVDLSHNNLGGSIPQSLFELPMVQHLLLADNQFDGHVTEIX 425
N TG I S G NL + LS+N L G IP+ + L + L L++N F G++
Sbjct: 476 NDLTGEIPS-GLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPA-E 533
Query: 426 XXXXXXXXXXXXXXXXXEGPIPLSFFEXXXXXXXXXXXXXFVGTIELDAIQRLRNLFRLD 485
G IP + F+ I+ D +++ +
Sbjct: 534 LGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNL 593
Query: 486 LSYNRLAVVAGSSVYCFPPLLTTLSLASCKLSAIPNLRKQTKLYHLDLSDNQISGEIPNW 545
L + + + + P T + S P + LD+S N +SG IP
Sbjct: 594 LEFQGIRSEQLNRLSTRNPCNITSRVYGGHTS--PTFDNNGSMMFLDMSYNMLSGYIPK- 650
Query: 546 LWKIGKDSFXXXXXXXXXXXXXEQPYSISDLTSLSVLDLHSNQIQGKIPPLPPNAAY--- 602
+IG + P + DL L++LDL SN++ G+IP
Sbjct: 651 --EIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTE 708
Query: 603 VDYSGNNFTSSIP 615
+D S NN + IP
Sbjct: 709 IDLSNNNLSGPIP 721
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 92/355 (25%), Positives = 138/355 (38%), Gaps = 90/355 (25%)
Query: 49 DCDEAGRVIGLDLSEESISAGIDNSSSLFSLKYLQSLNLAFNMFNATEIPXXXXXXXXXX 108
+C E ++ L LS +S I SSL SL L+ L L NM EIP
Sbjct: 416 NCSE---LVSLHLSFNYLSGTI--PSSLGSLSKLRDLKLWLNMLEG-EIPQELMYVKTLE 469
Query: 109 XXXXXXAGFAGQIPIQVSGMTRLVTLDLSGMYFVRAPLKLENPNLSGLLQNLAELRELYL 168
G+IP +S T L + LS L E P G L+NLA
Sbjct: 470 TLILDFNDLTGEIPSGLSNCTNLNWISLS-----NNRLTGEIPKWIGRLENLA------- 517
Query: 169 DGVNISAPGIEWCQALSSLVPKLQVLSLSGCFLSGPVDPSLSNLRSLSVIRLDMNDLYSP 228
+L LS SG + L + RSL + L+ N
Sbjct: 518 ------------------------ILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGT 553
Query: 229 VP--------EFLADF-SNLTSLYLSSCGL----HGA---------FPEKILQL------ 260
+P + A+F + +Y+ + G+ HGA E++ +L
Sbjct: 554 IPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPC 613
Query: 261 ------------PTLET------LDLSYNELLQGSLPDFHQNLS-LETLILSATNFSGIL 301
PT + LD+SYN +L G +P ++ L L L + SG +
Sbjct: 614 NITSRVYGGHTSPTFDNNGSMMFLDMSYN-MLSGYIPKEIGSMPYLFILNLGHNDISGSI 672
Query: 302 PDSIKNLKNLSRVEFYLCNFNGPIPTSMSDLSQLVYLDMSFNHFSGPIPSLHMFR 356
PD + +L+ L+ ++ +G IP +MS L+ L +D+S N+ SGPIP + F
Sbjct: 673 PDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFE 727
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 155 bits (393), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 199/738 (26%), Positives = 305/738 (41%), Gaps = 114/738 (15%)
Query: 271 NELLQGSLPDFHQNLSLETLILSATNFSGILPDSIKNLKNLSRVEFY-----LCNFNGPI 325
N + GS+ F + SL +L LS + SG + ++ +L + S ++F +F G +
Sbjct: 83 NSHINGSVSGFKCSASLTSLDLSRNSLSGPV-TTLTSLGSCSGLKFLNVSSNTLDFPGKV 141
Query: 326 PTSMSDLSQLVYLDMSFNHFSGPIPSLHMFRN----LAYLDLSYNIFTGGISSIGWEQLL 381
+ L+ L LD+S N SG + + L +L +S N +G + + +
Sbjct: 142 SGGLK-LNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD---VSRCV 197
Query: 382 NLFHVDLSHNNLGGSIPQSLFELPMVQHLLLADNQFDGHVTEIXXXXXXXXXXXXXXXXX 441
NL +D+S NN IP L + +QHL ++ N+ G +
Sbjct: 198 NLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSR------------------ 238
Query: 442 XEGPIPLSFFEXXXXXXXXXXXXXFVGTIELDAIQRLRNLFRLDLSYNRLAVVAGSSVYC 501
AI L L++S N+ V
Sbjct: 239 --------------------------------AISTCTELKLLNISSNQF-------VGP 259
Query: 502 FPPL----LTTLSLASCKLSA-IPNLRKQT--KLYHLDLSDNQISGEIPNWLWKIGKDSF 554
PPL L LSLA K + IP+ L LDLS N G +P + G S
Sbjct: 260 IPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFF---GSCSL 316
Query: 555 XXXXXXXXXXXXXEQPY-SISDLTSLSVLDLHSNQIQGKIPP----LPPNAAYVDYSGNN 609
E P ++ + L VLDL N+ G++P L + +D S NN
Sbjct: 317 LESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNN 376
Query: 610 FTSSI-PVDIGXXXXXXXXXXXXKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLI 668
F+ I P N TG IP ++ N + L+ L LS+NYLSG IP+ L
Sbjct: 377 FSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLG 436
Query: 669 NMSDSQXXXXXXXXXXXXXTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDL 728
++S + + +L TL L+ N L G +P L+NC+ L + L
Sbjct: 437 SLSKLRDLKLWLNMLEGEIPQELMYVK--TLETLILDFNDLTGEIPSGLSNCTNLNWISL 494
Query: 729 GNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLP 788
NN+ P W+ L +L L +N+F GNI P L +DL +N F+G +P
Sbjct: 495 SNNRLTGEIPKWIGRLENLAILKLSNNSFSGNI--PAELGDCRSLIWLDLNTNLFNGTIP 552
Query: 789 -----------------QKWLLNLEAMMVDEGRSQSELKHLQ-YRFLNLSQAYYQDAITV 830
++++ M E L Q R L++ ++ +
Sbjct: 553 AAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNI 612
Query: 831 TIKGLEMKLAKILNIFTS---IDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSL 887
T + + + S +D S N G IP+E+G + L LNL HN ++GSIP
Sbjct: 613 TSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDE 672
Query: 888 IGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLNLSYNHLVGRIPTSTQLQSFLATSFE 947
+G+LR + LDLS N L G IP +++L L+ ++LS N+L G IP Q ++F F
Sbjct: 673 VGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFL 732
Query: 948 GNDRLWGPPLNVC-PTNS 964
N L G PL C P+N+
Sbjct: 733 NNPGLCGYPLPRCDPSNA 750
Score = 111 bits (278), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 175/661 (26%), Positives = 253/661 (38%), Gaps = 124/661 (18%)
Query: 214 SLSVIRLDMNDLYSPVPEF--LADFSNLTSLYLSSCGLHGAFPEKI---LQLPTLETLDL 268
SL+ + L N L PV L S L L +SS L FP K+ L+L +LE LDL
Sbjct: 98 SLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD--FPGKVSGGLKLNSLEVLDL 155
Query: 269 SYNELLQGSLPDFHQNLSLETLILSATNFSG-ILPDSIKNLKNLSRVEFYLCNFNGPIPT 327
S N + S N G +L D LK+L+ +G +
Sbjct: 156 SANSI-------------------SGANVVGWVLSDGCGELKHLA--------ISGNKIS 188
Query: 328 SMSDLSQLV---YLDMSFNHFSGPIPSLHMFRNLAYLDLSYNIFTG----GISSIGWEQL 380
D+S+ V +LD+S N+FS IP L L +LD+S N +G IS+ +L
Sbjct: 189 GDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKL 248
Query: 381 LNLFHVDLSHNNLGGSIPQSLFELPMVQHLLLADNQFDGHVTEIXXXXXXXXXXXXXXXX 440
LN +S N G IP L +Q+L LA+N+F G + +
Sbjct: 249 LN-----ISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGN 301
Query: 441 XXEGPIPLSFFEXXXXXXXXXXXXXFVGTIELDAIQRLRNLFRLDLSYNRLAVVAGSSVY 500
G +P F F G + +D + ++R L LDLS+N + S+
Sbjct: 302 HFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLT 361
Query: 501 CFPPLLTTLSLASCKLSA--IPNLRKQTK--LYHLDLSDNQISGEIP------------- 543
L TL L+S S +PNL + K L L L +N +G+IP
Sbjct: 362 NLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLH 421
Query: 544 ---NWL-----WKIGKDSFXXXXXXXXXXXXXEQPYSISDLTSLSVLDLHSNQIQGKIPP 595
N+L +G S E P + + +L L L N + G+IP
Sbjct: 422 LSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPS 481
Query: 596 LPPNAA---YVDYSGNNFTSSIPVDIGXXXXXXXXXXXXKNSLTGVIPESICNATNLLVL 652
N ++ S N T IP IG NS +G IP + + +L+ L
Sbjct: 482 GLSNCTNLNWISLSNNRLTGEIPKWIG-RLENLAILKLSNNSFSGNIPAELGDCRSLIWL 540
Query: 653 DLSYNYLSGMIPTCLINMSD---------------------------SQXXXXXXXXXXX 685
DL+ N +G IP + S
Sbjct: 541 DLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQ 600
Query: 686 XXTVSATFPANCSLR--------TLDLNG---------NQLEGMVPKSLANCSVLEILDL 728
+S P N + R T D NG N L G +PK + + L IL+L
Sbjct: 601 LNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNL 660
Query: 729 GNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLP 788
G+N + P V + L++L L SN G I P+ + ML IDL++N SG +P
Sbjct: 661 GHNDISGSIPDEVGDLRGLNILDLSSNKLDGRI--PQAMSALTMLTEIDLSNNNLSGPIP 718
Query: 789 Q 789
+
Sbjct: 719 E 719
Score = 107 bits (267), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 176/675 (26%), Positives = 260/675 (38%), Gaps = 152/675 (22%)
Query: 46 SGVDCDEAGRVIGLDLSEESISAGIDNSSSLFSLKYLQSLNLAFNMFNATEIPXXXXXXX 105
SG C + + LDLS S+S + +SL S L+ LN++ N +
Sbjct: 91 SGFKC--SASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD------------ 136
Query: 106 XXXXXXXXXAGFAGQIPIQVSGMTRLVTLDLSGMYFVRAPLKLENPNLSG-------LLQ 158
P +VSG +L +L++ L L ++SG L
Sbjct: 137 ---------------FPGKVSGGLKLNSLEV---------LDLSANSISGANVVGWVLSD 172
Query: 159 NLAELRELYLDGVNISAP-GIEWCQAL----------SSLVP------KLQVLSLSGCFL 201
EL+ L + G IS + C L S+ +P LQ L +SG L
Sbjct: 173 GCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKL 232
Query: 202 SGPVDPSLSN----------------------LRSLSVIRLDMNDLYSPVPEFLADFSN- 238
SG ++S L+SL + L N +P+FL+ +
Sbjct: 233 SGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDT 292
Query: 239 LTSLYLSSCGLHGAFP-------------------------EKILQLPTLETLDLSYNEL 273
LT L LS +GA P + +L++ L+ LDLS+NE
Sbjct: 293 LTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNE- 351
Query: 274 LQGSLPDFHQNL--SLETLILSATNFSG-ILPDSIKNLKNLSRVEFYLCN--FNGPIPTS 328
G LP+ NL SL TL LS+ NFSG ILP+ +N KN + E YL N F G IP +
Sbjct: 352 FSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKN-TLQELYLQNNGFTGKIPPT 410
Query: 329 MSDLSQLVYLDMSFNHFSGPIPS-------------------------LHMFRNLAYLDL 363
+S+ S+LV L +SFN+ SG IPS L + L L L
Sbjct: 411 LSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLIL 470
Query: 364 SYNIFTGGISSIGWEQLLNLFHVDLSHNNLGGSIPQSLFELPMVQHLLLADNQFDGHVTE 423
+N TG I S G NL + LS+N L G IP+ + L + L L++N F G++
Sbjct: 471 DFNDLTGEIPS-GLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPA 529
Query: 424 IXXXXXXXXXXXXXXXXXXEGPIPLSFFEXXXXXXXXXXXXXFVGTIELDAIQRLRNLFR 483
G IP + F+ I+ D +++ +
Sbjct: 530 -ELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAG 588
Query: 484 LDLSYNRLAVVAGSSVYCFPPLLTTLSLASCKLSAIPNLRKQTKLYHLDLSDNQISGEIP 543
L + + + + P T + S P + LD+S N +SG IP
Sbjct: 589 NLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTS--PTFDNNGSMMFLDMSYNMLSGYIP 646
Query: 544 NWLWKIGKDSFXXXXXXXXXXXXXEQPYSISDLTSLSVLDLHSNQIQGKIPPLPPNAAY- 602
+IG + P + DL L++LDL SN++ G+IP
Sbjct: 647 K---EIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTML 703
Query: 603 --VDYSGNNFTSSIP 615
+D S NN + IP
Sbjct: 704 TEIDLSNNNLSGPIP 718
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 92/355 (25%), Positives = 138/355 (38%), Gaps = 90/355 (25%)
Query: 49 DCDEAGRVIGLDLSEESISAGIDNSSSLFSLKYLQSLNLAFNMFNATEIPXXXXXXXXXX 108
+C E ++ L LS +S I SSL SL L+ L L NM EIP
Sbjct: 413 NCSE---LVSLHLSFNYLSGTI--PSSLGSLSKLRDLKLWLNMLEG-EIPQELMYVKTLE 466
Query: 109 XXXXXXAGFAGQIPIQVSGMTRLVTLDLSGMYFVRAPLKLENPNLSGLLQNLAELRELYL 168
G+IP +S T L + LS L E P G L+NLA
Sbjct: 467 TLILDFNDLTGEIPSGLSNCTNLNWISLS-----NNRLTGEIPKWIGRLENLA------- 514
Query: 169 DGVNISAPGIEWCQALSSLVPKLQVLSLSGCFLSGPVDPSLSNLRSLSVIRLDMNDLYSP 228
+L LS SG + L + RSL + L+ N
Sbjct: 515 ------------------------ILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGT 550
Query: 229 VP--------EFLADF-SNLTSLYLSSCGL----HGA---------FPEKILQL------ 260
+P + A+F + +Y+ + G+ HGA E++ +L
Sbjct: 551 IPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPC 610
Query: 261 ------------PTLET------LDLSYNELLQGSLPDFHQNLS-LETLILSATNFSGIL 301
PT + LD+SYN +L G +P ++ L L L + SG +
Sbjct: 611 NITSRVYGGHTSPTFDNNGSMMFLDMSYN-MLSGYIPKEIGSMPYLFILNLGHNDISGSI 669
Query: 302 PDSIKNLKNLSRVEFYLCNFNGPIPTSMSDLSQLVYLDMSFNHFSGPIPSLHMFR 356
PD + +L+ L+ ++ +G IP +MS L+ L +D+S N+ SGPIP + F
Sbjct: 670 PDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFE 724
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 83.2 bits (204), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 76/262 (29%), Positives = 117/262 (44%), Gaps = 54/262 (20%)
Query: 190 KLQVLSLSGCFLSGP--VDPSLSNLRSLSVIRLD-MNDLYSPVPEFLADFSNLTSLYLSS 246
++ L LSG L P + SL+NL L+ + + +N+L P+P +A + L LY++
Sbjct: 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITH 110
Query: 247 CGLHGAFPEKILQLPTLETLDLSYNELLQGSLPDFHQNLSLETLILSATNFSGILPDSIK 306
+ GA P+ + Q+ TL TLD SYN L SG LP SI
Sbjct: 111 TNVSGAIPDFLSQIKTLVTLDFSYNAL------------------------SGTLPPSIS 146
Query: 307 NLKNLSRVEFYLCNFNGPIPTSMSDLSQL-VYLDMSFNHFSGPIPSLHMFRNLAYLDLSY 365
+L NL + F +G IP S S+L + +S N +G IP NLA++DLS
Sbjct: 147 SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSR 206
Query: 366 NIFTGGIS------------------------SIGWEQLLNLFHVDLSHNNLGGSIPQSL 401
N+ G S +G + NL +DL +N + G++PQ L
Sbjct: 207 NMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSK--NLNGLDLRNNRIYGTLPQGL 264
Query: 402 FELPMVQHLLLADNQFDGHVTE 423
+L + L ++ N G + +
Sbjct: 265 TQLKFLHSLNVSFNNLCGEIPQ 286
Score = 81.3 bits (199), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 78/273 (28%), Positives = 114/273 (41%), Gaps = 23/273 (8%)
Query: 699 LRTLDLNGNQLEGM--VPKSLANCSVLEILDLGN-NQFDDTFPCWVKNASRLHVLILRSN 755
+ LDL+G L +P SLAN L L +G N P + ++LH L +
Sbjct: 52 VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111
Query: 756 NFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKW--LLNLEAMMVDEGRSQSELKHLQ 813
N G I P + L +D + N SG LP L NL + D R +
Sbjct: 112 NVSGAI--PDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSY 169
Query: 814 YRF------LNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLL 867
F + +S+ I T L + +D SRN EG G
Sbjct: 170 GSFSKLFTSMTISRNRLTGKIPPTFANLNLAF---------VDLSRNMLEGDASVLFGSD 220
Query: 868 QSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLNLSYNH 927
++ ++L+ N+L + +G + + LDL N + GT+P L L FL LN+S+N+
Sbjct: 221 KNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNN 279
Query: 928 LVGRIPTSTQLQSFLATSFEGNDRLWGPPLNVC 960
L G IP LQ F +++ N L G PL C
Sbjct: 280 LCGEIPQGGNLQRFDVSAYANNKCLCGSPLPAC 312
Score = 52.8 bits (125), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 53/222 (23%), Positives = 84/222 (37%), Gaps = 34/222 (15%)
Query: 520 PNLRKQTKLYHLDLSDNQISGEIPNWLWKIGKDSFXXXXXXXXXXXXXEQPYSISDLTSL 579
P + K T+L++L ++ +SG IP++L S + +L
Sbjct: 95 PAIAKLTQLHYLYITHTNVSGAIPDFL---------------------------SQIKTL 127
Query: 580 SVLDLHSNQIQGKIPPLP---PNAAYVDYSGNNFTSSIPVDIGXXXXXXXXXXXXKNSLT 636
LD N + G +PP PN + + GN + +IP G +N LT
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187
Query: 637 GVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQXXXXXXXXXXXXXTVSATFPAN 696
G IP + N NL +DLS N L G + ++Q +
Sbjct: 188 GKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL---GKVGLS 243
Query: 697 CSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFP 738
+L LDL N++ G +P+ L L L++ N P
Sbjct: 244 KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 62/263 (23%), Positives = 100/263 (38%), Gaps = 52/263 (19%)
Query: 162 ELRELYLDGVNISAPGIEWCQALSSLVPKLQVLSLSGCF-LSGPVDPSLSNLRSLSVIRL 220
+ L L G+N+ P +L++L P L L + G L GP+ P+++ L L + +
Sbjct: 51 RVNNLDLSGLNLPKP-YPIPSSLANL-PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYI 108
Query: 221 DMNDLYSPVPEFLADFSNLTSLYLSSCGLHGAFPEKILQLPTLETLDLSYNEL------- 273
++ +P+FL+ L +L S L G P I LP L + N +
Sbjct: 109 THTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS 168
Query: 274 -----------------LQGSLPDFHQNLSLETLILSATNFSGILPDSIKNLKNLSRVEF 316
L G +P NL+L + LS G + KN ++
Sbjct: 169 YGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIH- 227
Query: 317 YLCNFNGPIPTSMSDLSQLVYLDMSFNHFSGPIPSLHMFRNLAYLDLSYNIFTGGISSIG 376
++ N + + + + +NL LDL N G + G
Sbjct: 228 -----------------------LAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQ-G 263
Query: 377 WEQLLNLFHVDLSHNNLGGSIPQ 399
QL L +++S NNL G IPQ
Sbjct: 264 LTQLKFLHSLNVSFNNLCGEIPQ 286
Score = 36.6 bits (83), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 45/210 (21%), Positives = 79/210 (37%), Gaps = 38/210 (18%)
Query: 608 NNFTSSIPVDIGXXXXXXXXXXXXKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCL 667
NN IP I N ++G IP+ + L+ LD SYN LSG +P +
Sbjct: 87 NNLVGPIPPAIAKLTQLHYLYITHTN-VSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI 145
Query: 668 INMSDSQXXXXXXXXXXXXXTVSATFPANCS-----LRTLDLNGNQLEGMVPKSLANCSV 722
++ + +S P + ++ ++ N+L G +P + AN +
Sbjct: 146 SSLPN------LVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN- 198
Query: 723 LEILDLGNNQFDDTFPCWV---KNASRLHV--------------------LILRSNNFFG 759
L +DL N + KN ++H+ L LR+N +G
Sbjct: 199 LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYG 258
Query: 760 NISCPRYNVSWPMLQIIDLASNKFSGRLPQ 789
+ P+ L ++++ N G +PQ
Sbjct: 259 TL--PQGLTQLKFLHSLNVSFNNLCGEIPQ 286
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 79/280 (28%), Positives = 119/280 (42%), Gaps = 18/280 (6%)
Query: 693 FPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLIL 752
F C LR + + LE VPK L + L LDL NN+ + KN LH LIL
Sbjct: 27 FRCQCHLRVVQCSDLGLE-KVPKDLPPDTAL--LDLQNNKITEIKDGDFKNLKNLHTLIL 83
Query: 753 RSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHL 812
NN IS P L+ + L+ N+ LP+K L+ + V E K +
Sbjct: 84 -INNKISKIS-PGAFAPLVKLERLYLSKNQLK-ELPEKMPKTLQELRVHENEITKVRKSV 140
Query: 813 QYRFLNLSQAYYQDAITVTIK--GLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSL 870
F L+Q + T +K G+E + + + I + N IP+ GL SL
Sbjct: 141 ---FNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQ--GLPPSL 194
Query: 871 CALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLNLSYNHLVG 930
L+L N +T + + L + L LS N++S LA+ L L+L+ N LV
Sbjct: 195 TELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV- 253
Query: 931 RIPTSTQLQSFLATSFEGNDRLWGPPLN-VCPT--NSSKA 967
++P ++ + N+ + N CP N+ KA
Sbjct: 254 KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKA 293
Score = 38.1 bits (87), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 68/263 (25%), Positives = 111/263 (42%), Gaps = 31/263 (11%)
Query: 165 ELYLDGVNISAPGIEWCQALSSLVPKLQVLSLSGCFLSGPVDPSLSNLRSLSVIRLDMND 224
+ +L V S G+E + L P +L L ++ D NL++L + L N
Sbjct: 30 QCHLRVVQCSDLGLE--KVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNK 87
Query: 225 LYSPVPEFLADFSNLTSLYLSSCGLHGAFPEKILQLPTLETLDLSYNELLQGSLPDFHQN 284
+ P A L LYLS L PEK+ + TL+ L + NE+ + F+
Sbjct: 88 ISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMPK--TLQELRVHENEITKVRKSVFN-G 143
Query: 285 LSLETLILSATN---FSGILPDSIKNLKNLSRVEFYLCNFNG---PIPTSMSDL----SQ 334
L+ ++ TN SGI + + +K LS + N +P S+++L ++
Sbjct: 144 LNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNK 203
Query: 335 LVYLDMSFNHFSGPIPSLHMFRNLAYLDLSYNIFTGGISSIGWEQLLNLFHVDLSH--NN 392
+ +D + SL NLA L LS+N IS++ L N H+ H NN
Sbjct: 204 ITKVDAA---------SLKGLNNLAKLGLSFN----SISAVDNGSLANTPHLRELHLNNN 250
Query: 393 LGGSIPQSLFELPMVQHLLLADN 415
+P L + +Q + L +N
Sbjct: 251 KLVKVPGGLADHKYIQVVYLHNN 273
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 79/280 (28%), Positives = 119/280 (42%), Gaps = 18/280 (6%)
Query: 693 FPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLIL 752
F C LR + + LE VPK L + L LDL NN+ + KN LH LIL
Sbjct: 27 FRCQCHLRVVQCSDLGLE-KVPKDLPPDTAL--LDLQNNKITEIKDGDFKNLKNLHTLIL 83
Query: 753 RSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHL 812
NN IS P L+ + L+ N+ LP+K L+ + V E K +
Sbjct: 84 -INNKISKIS-PGAFAPLVKLERLYLSKNQLK-ELPEKMPKTLQELRVHENEITKVRKSV 140
Query: 813 QYRFLNLSQAYYQDAITVTIK--GLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSL 870
F L+Q + T +K G+E + + + I + N IP+ GL SL
Sbjct: 141 ---FNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQ--GLPPSL 194
Query: 871 CALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLNLSYNHLVG 930
L+L N +T + + L + L LS N++S LA+ L L+L+ N LV
Sbjct: 195 TELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV- 253
Query: 931 RIPTSTQLQSFLATSFEGNDRLWGPPLN-VCPT--NSSKA 967
++P ++ + N+ + N CP N+ KA
Sbjct: 254 KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKA 293
Score = 38.1 bits (87), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 68/263 (25%), Positives = 111/263 (42%), Gaps = 31/263 (11%)
Query: 165 ELYLDGVNISAPGIEWCQALSSLVPKLQVLSLSGCFLSGPVDPSLSNLRSLSVIRLDMND 224
+ +L V S G+E + L P +L L ++ D NL++L + L N
Sbjct: 30 QCHLRVVQCSDLGLE--KVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNK 87
Query: 225 LYSPVPEFLADFSNLTSLYLSSCGLHGAFPEKILQLPTLETLDLSYNELLQGSLPDFHQN 284
+ P A L LYLS L PEK+ + TL+ L + NE+ + F+
Sbjct: 88 ISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMPK--TLQELRVHENEITKVRKSVFN-G 143
Query: 285 LSLETLILSATN---FSGILPDSIKNLKNLSRVEFYLCNFNG---PIPTSMSDL----SQ 334
L+ ++ TN SGI + + +K LS + N +P S+++L ++
Sbjct: 144 LNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNK 203
Query: 335 LVYLDMSFNHFSGPIPSLHMFRNLAYLDLSYNIFTGGISSIGWEQLLNLFHVDLSH--NN 392
+ +D + SL NLA L LS+N IS++ L N H+ H NN
Sbjct: 204 ITKVDAA---------SLKGLNNLAKLGLSFN----SISAVDNGSLANTPHLRELHLNNN 250
Query: 393 LGGSIPQSLFELPMVQHLLLADN 415
+P L + +Q + L +N
Sbjct: 251 KLVKVPGGLADHKYIQVVYLHNN 273
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 68/252 (26%), Positives = 116/252 (46%), Gaps = 30/252 (11%)
Query: 690 SATFPANCSLRTLDLNGNQLE-GMVPKSLANCSVLEILDLGNNQFDDTFPC--WVKNASR 746
+A+FP SLR L + GN + + + L L+ LDL ++ + + C +KN
Sbjct: 320 AASFP---SLRDLYIKGNMRKLDLGTRCLEKLENLQKLDLSHSDIEASDCCNLQLKNLRH 376
Query: 747 LHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQK--------WLLNLEAM 798
L L L N G + + P L+++D+A + P +LNL
Sbjct: 377 LQYLNLSYNEPLG-LEDQAFK-ECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVLNLSHC 434
Query: 799 MVDEGRSQSELKHLQ-YRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTS---IDFSRN 854
++D +Q L LQ R LNL +QD L+M + + I +S + +
Sbjct: 435 LLDTS-NQHLLAGLQDLRHLNLQGNSFQDGSISKTNLLQMVGSLEILILSSCNLLSIDQQ 493
Query: 855 NFEGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLAS 914
F G L+++ L+LSHN+LTG + +L+ + L+++ NN+ P L +
Sbjct: 494 AFHG--------LRNVNHLDLSHNSLTGDSMDALSHLKGL-YLNMASNNIRIIPPHLLPA 544
Query: 915 LNFLSVLNLSYN 926
L+ S++NLS+N
Sbjct: 545 LSQQSIINLSHN 556
Score = 36.2 bits (82), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 68/275 (24%), Positives = 114/275 (41%), Gaps = 46/275 (16%)
Query: 129 TRLVTLDLSGMYFVRAPLKLENPNLSGLLQNLAELRELYLDGVNISAPGIEWCQALSSLV 188
TR+ LDL+ + P +E N L++L L+ + + CQ ++
Sbjct: 277 TRVQELDLTAAHLNGLPSGIEGMN---------SLKKLVLNANSFD----QLCQINAASF 323
Query: 189 PKLQVLSLSGCFLSGPVDPSLSNLRSLSVIRLDMNDLYSPVPEFLADFSNLTSLYLSSCG 248
P L+ L + G N+R +LD+ L NL L LS
Sbjct: 324 PSLRDLYIKG------------NMR-----KLDLG------TRCLEKLENLQKLDLSHSD 360
Query: 249 LHGA--FPEKILQLPTLETLDLSYNELLQGSLPDFHQNLSLETLILSATNFSGILPDS-I 305
+ + ++ L L+ L+LSYNE L F + LE L ++ T+ P S
Sbjct: 361 IEASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPHSPF 420
Query: 306 KNLKNLSRVEFYLCNFNGPIPTSMSDLSQLVYLDMSFNHFS-GPIPSLHMFRNLAYLDL- 363
+NL L + C + ++ L L +L++ N F G I ++ + + L++
Sbjct: 421 QNLHLLRVLNLSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQDGSISKTNLLQMVGSLEIL 480
Query: 364 ---SYNIFTGGISSIGWEQLLNLFHVDLSHNNLGG 395
S N+ + I + L N+ H+DLSHN+L G
Sbjct: 481 ILSSCNLLS--IDQQAFHGLRNVNHLDLSHNSLTG 513
Score = 34.3 bits (77), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 84/197 (42%), Gaps = 19/197 (9%)
Query: 157 LQNLAELRELYLDGVNISAPGIEWCQALSSLVPKLQVLSLSGCFLSGPVDPSLSNLRSLS 216
L+ L L++L L +I A + C + LQ L+LS G D + L
Sbjct: 345 LEKLENLQKLDLSHSDIEAS--DCCNLQLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLE 402
Query: 217 VIRLDMNDLYSPVPEFLADFSNL---TSLYLSSCGLHGAFPEKILQLPTLETLDLSYNEL 273
++ + L+ P + F NL L LS C L + + L L L+L N
Sbjct: 403 LLDVAFTHLHVKAPH--SPFQNLHLLRVLNLSHCLLDTSNQHLLAGLQDLRHLNLQGNSF 460
Query: 274 LQGSLPDFHQNL-----SLETLILSATNFSGILPDSIKNLKNLSRVEFYLCNFNGPIPTS 328
GS+ NL SLE LILS+ N I + L+N++ ++ + N S
Sbjct: 461 QDGSISK--TNLLQMVGSLEILILSSCNLLSIDQQAFHGLRNVNHLDL---SHNSLTGDS 515
Query: 329 MSDLSQL--VYLDMSFN 343
M LS L +YL+M+ N
Sbjct: 516 MDALSHLKGLYLNMASN 532
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 68/249 (27%), Positives = 111/249 (44%), Gaps = 16/249 (6%)
Query: 154 SGLLQNLAELRELYLDGVNISA--PGIEWCQALSSLVPKLQVLSLSGCFLSGPVDPSLSN 211
S Q +L+EL L ++ G++ L LV + C +S PSL++
Sbjct: 268 STTFQCFTQLQELDLTATHLKGLPSGMKGLNLLKKLVLSVNHFD-QLCQISAANFPSLTH 326
Query: 212 LRSLSVIRLDMNDLYSPVPEFLADFSNLTSLYLSSCGLHGA--FPEKILQLPTLETLDLS 269
L IR ++ L+ V L NL +L LS + + ++ L L+TL+LS
Sbjct: 327 L----YIRGNVKKLHLGVG-CLEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLS 381
Query: 270 YNELLQGSLPDFHQNLSLETLILSATNFSGILPDS-IKNLKNLSRVEFYLCNFNGPIPTS 328
+NE L F + LE L L+ T P S +NL L + C +
Sbjct: 382 HNEPLGLQSQAFKECPQLELLDLAFTRLHINAPQSPFQNLHFLQVLNLTYCFLDTSNQHL 441
Query: 329 MSDLSQLVYLDMSFNHFS-GPIPSLHMFRNLAYLDLSYNIFTGGISSI---GWEQLLNLF 384
++ L L +L++ NHF G I ++ + + L++ + + G+ SI + L +
Sbjct: 442 LAGLPVLRHLNLKGNHFQDGTITKTNLLQTVGSLEVLI-LSSCGLLSIDQQAFHSLGKMS 500
Query: 385 HVDLSHNNL 393
HVDLSHN+L
Sbjct: 501 HVDLSHNSL 509
Score = 37.0 bits (84), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 60/220 (27%), Positives = 95/220 (43%), Gaps = 30/220 (13%)
Query: 723 LEILDLGNNQFDDTFPC--WVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLAS 780
L+ LDL +N + + C +KN S L L L N G S + P L+++DLA
Sbjct: 349 LQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQS--QAFKECPQLELLDLAF 406
Query: 781 NKFSGRLPQKWLLNLEAMMVD-------EGRSQSELKHLQY-RFLNLSQAYYQDAITV-- 830
+ PQ NL + V + +Q L L R LNL ++QD
Sbjct: 407 TRLHINAPQSPFQNLHFLQVLNLTYCFLDTSNQHLLAGLPVLRHLNLKGNHFQDGTITKT 466
Query: 831 ----TIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPS 886
T+ LE+ + + SID + L + ++LSHN+LT
Sbjct: 467 NLLQTVGSLEVLILSSCGLL-SID----------QQAFHSLGKMSHVDLSHNSLTCDSID 515
Query: 887 LIGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLNLSYN 926
+ +L+ I L+L+ N+++ P L L+ S +NLS+N
Sbjct: 516 SLSHLKGI-YLNLAANSINIISPRLLPILSQQSTINLSHN 554
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 67/154 (43%), Gaps = 14/154 (9%)
Query: 123 IQVSGMTRLVTLDLSGMYFVRAPLKLENPNLSGLLQNLAELRELYLDGVNISAPGIEWCQ 182
+Q+ ++ L TL+LS PL L++ Q EL +L ++I+AP Q
Sbjct: 367 LQLKNLSHLQTLNLSH----NEPLGLQSQAFKECPQ--LELLDLAFTRLHINAP-----Q 415
Query: 183 ALSSLVPKLQVLSLSGCFLSGPVDPSLSNLRSLSVIRLDMNDLYSPV---PEFLADFSNL 239
+ + LQVL+L+ CFL L+ L L + L N L +L
Sbjct: 416 SPFQNLHFLQVLNLTYCFLDTSNQHLLAGLPVLRHLNLKGNHFQDGTITKTNLLQTVGSL 475
Query: 240 TSLYLSSCGLHGAFPEKILQLPTLETLDLSYNEL 273
L LSSCGL + L + +DLS+N L
Sbjct: 476 EVLILSSCGLLSIDQQAFHSLGKMSHVDLSHNSL 509
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 80/195 (41%), Gaps = 20/195 (10%)
Query: 758 FGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQY-RF 816
F +IS + + LQ +DL + G LNL +V +L + F
Sbjct: 263 FSDISSTTFQC-FTQLQELDLTATHLKGLPSGMKGLNLLKKLVLSVNHFDQLCQISAANF 321
Query: 817 LNLSQAYYQDAITVTIKGLEMK---LAKILNIFTSIDFSRNNFEGPIPEEMGL--LQSLC 871
+L+ Y I +K L + L K+ N+ T +D S N+ E + L L L
Sbjct: 322 PSLTHLY----IRGNVKKLHLGVGCLEKLGNLQT-LDLSHNDIEASDCCSLQLKNLSHLQ 376
Query: 872 ALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQ-LASLNFLSVLNLSY----- 925
LNLSHN G ++E LDL+ L P +L+FL VLNL+Y
Sbjct: 377 TLNLSHNEPLGLQSQAFKECPQLELLDLAFTRLHINAPQSPFQNLHFLQVLNLTYCFLDT 436
Query: 926 --NHLVGRIPTSTQL 938
HL+ +P L
Sbjct: 437 SNQHLLAGLPVLRHL 451
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 75/195 (38%), Gaps = 10/195 (5%)
Query: 226 YSPVPEFLADFSNLTSLYLSSCGLHGAFPEKILQLPTLETLDLSYNELLQGSLPDFHQNL 285
Y P F NLT L+L S L G L LE LDLS N L+ P + L
Sbjct: 45 YVPAASF-QSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGL 103
Query: 286 S-LETLILSATNFSGILPDSIKNLKNLSRVEFYLCNFNGPIPTSMSDLSQLVYLDMSFNH 344
L TL L + P + L L + N + DL L +L + N
Sbjct: 104 GHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNR 163
Query: 345 FSGPIPSL--HMFRNLAYLD--LSYNIFTGGISSIGWEQLLNLFHVDLSHNNLGGSIPQS 400
IPS+ H FR L LD L + + + L L + L NNL +
Sbjct: 164 ----IPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLSMLPAEV 219
Query: 401 LFELPMVQHLLLADN 415
L L +Q+L L DN
Sbjct: 220 LVPLRSLQYLRLNDN 234
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 79/208 (37%), Gaps = 10/208 (4%)
Query: 633 NSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQXXXXXXXXXXXXXTVSAT 692
NS+ + N NL+ LDLS+N LS + + + Q +
Sbjct: 107 NSIHKIKSNPFKNQKNLIKLDLSHNGLSSTKLGTGVQLENLQELLLAKNKILALRSEELE 166
Query: 693 FPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFP---CWVKNASRLHV 749
F N SLR LDL+ N L+ P L L L N Q + CW + + +
Sbjct: 167 FLGNSSLRKLDLSSNPLKEFSPGCFQTIGKLFALLLNNAQLNPHLTEKLCWELSNTSIQN 226
Query: 750 LILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFS-------GRLPQKWLLNLEAMMVDE 802
L L +N + W L +DL+ N LP L+LE +
Sbjct: 227 LSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQR 286
Query: 803 GRSQSELKHLQYRFLNLSQAYYQDAITV 830
+S R+L+L +A+ + ++++
Sbjct: 287 LSPRSFYGLSNLRYLSLKRAFTKQSVSL 314
Score = 31.2 bits (69), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 46/102 (45%)
Query: 214 SLSVIRLDMNDLYSPVPEFLADFSNLTSLYLSSCGLHGAFPEKILQLPTLETLDLSYNEL 273
+++V+ L N L P +S L L + PE LP L+ L+L +NEL
Sbjct: 26 NITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQHNEL 85
Query: 274 LQGSLPDFHQNLSLETLILSATNFSGILPDSIKNLKNLSRVE 315
Q S F +L L L + + I + KN KNL +++
Sbjct: 86 SQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLD 127
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 860 IPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLASLNFLS 919
IP+++ ++ LNL+HN L P+ ++ LD N++S P L L
Sbjct: 19 IPDDLP--SNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLK 76
Query: 920 VLNLSYNHL 928
VLNL +N L
Sbjct: 77 VLNLQHNEL 85
Score = 30.0 bits (66), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 84/326 (25%), Positives = 125/326 (38%), Gaps = 73/326 (22%)
Query: 127 GMTRLVTLDLSGMYFVRAPLKLENPNLSGLLQNLAELRELYLDGVNISAPGIE-WCQALS 185
G + L LDLS PLK +P G Q + +L L L+ ++ E C LS
Sbjct: 169 GNSSLRKLDLSS-----NPLKEFSP---GCFQTIGKLFALLLNNAQLNPHLTEKLCWELS 220
Query: 186 SLVPKLQVLSLSGCFLSGPVDPSLSNLRSLSVIRLDMNDLYSPVPEFLADFSNLTSLYLS 245
+ +Q LSL+ L + + S L+ ++NLT L LS
Sbjct: 221 N--TSIQNLSLANNQLLATSESTFSGLK----------------------WTNLTQLDLS 256
Query: 246 SCGLHGAFPEKILQLPTLETLDLSYNELLQGSLPDFH--QNLSLETLILSATNFSGILPD 303
LH LP+L L L YN + + S F+ NL +L + T S L
Sbjct: 257 YNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSLKRAFTKQSVSLA- 315
Query: 304 SIKNLKNLS----RVEFYLCNFNGPIPTSMSD----LSQLVYLDMSFNHFS--------- 346
S N+ + S + YL + IP++ S+ L L YL +S S
Sbjct: 316 SHPNIDDFSFQWLKYLEYLNMDDNNIPSTKSNTFTGLVSLKYLSLSKTFTSLQTLTNETF 375
Query: 347 -----GPIPSLHMFRN---------------LAYLDLSYNIFTGGISSIGWEQLLNLFHV 386
P+ +L++ +N L LDL N +S W L N+F +
Sbjct: 376 VSLAHSPLLTLNLTKNHISKIANGTFSWLGQLRILDLGLNEIEQKLSGQEWRGLRNIFEI 435
Query: 387 DLSHNNLGGSIPQSLFELPMVQHLLL 412
LS+N S +P +Q L+L
Sbjct: 436 YLSYNKYLQLSTSSFALVPSLQRLML 461
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 63/213 (29%), Positives = 97/213 (45%), Gaps = 27/213 (12%)
Query: 154 SGLLQNLAELRELYLDGVNISAPGIEWCQALSSLVPKLQVLSLSGCFLSGPVD------- 206
+G L+NL LREL L +I + C + LQ L+LS + P+
Sbjct: 343 TGCLENLENLRELDLSHDDIETS--DCCNLQLRNLSHLQSLNLS---YNEPLSLKTEAFK 397
Query: 207 --PSLSNLRSLSVIRLDMNDLYSPVPEFLADFSNLTSLYLSSCGLHGAFPEKILQLPTLE 264
P L L L+ RL + D SP + L L LS L + + LP L+
Sbjct: 398 ECPQLE-LLDLAFTRLKVKDAQSP----FQNLHLLKVLNLSHSLLDISSEQLFDGLPALQ 452
Query: 265 TLDLSYNELLQGSLPDFH--QNLS-LETLILSATNFSGILPDSIKNLKNLSRVEFYLCNF 321
L+L N +G++ + Q L LE L+LS + S I + +LK ++ V+ +
Sbjct: 453 HLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDL---SH 509
Query: 322 NGPIPTSMSDLSQL--VYLDMSFNHFSGPIPSL 352
N +S+ LS L +YL+++ NH S +PSL
Sbjct: 510 NRLTSSSIEALSHLKGIYLNLASNHISIILPSL 542
Score = 37.0 bits (84), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 84/293 (28%), Positives = 119/293 (40%), Gaps = 45/293 (15%)
Query: 131 LVTLDLSGMYFVRAPLKLENPNLSGLLQNLAELRELYLDGVNISAPGIE-WCQALSSLVP 189
L LDL+ + P SGL+ L+ L++L L SA E CQ +S P
Sbjct: 280 LQELDLTATHLSELP--------SGLV-GLSTLKKLVL-----SANKFENLCQISASNFP 325
Query: 190 KLQVLSLSGCFLSGPVDPS-LSNLRSLSVIRLDMNDLYSP--VPEFLADFSNLTSLYLSS 246
L LS+ G + L NL +L + L +D+ + L + S+L SL LS
Sbjct: 326 SLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSY 385
Query: 247 CGLHGAFPEKILQLPTLETLDLSYNELLQGSLPDFHQNLSLETLILSATNFSGILPDSIK 306
E + P LE LDL++ L QNL L L N S L D
Sbjct: 386 NEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHL----LKVLNLSHSLLD--- 438
Query: 307 NLKNLSRVEFYLCNFNGPIPTSMSDLSQLVYLDMSFNHF-SGPIPSLHMFRNLAYLDLSY 365
+S + F+G L L +L++ NHF G I + + L L++
Sbjct: 439 ----ISSEQL----FDG--------LPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILV 482
Query: 366 NIFT--GGISSIGWEQLLNLFHVDLSHNNLGGSIPQSLFELPMVQHLLLADNQ 416
F I + L + HVDLSHN L S ++L L + +L LA N
Sbjct: 483 LSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNH 534
Score = 31.6 bits (70), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 57/203 (28%), Positives = 86/203 (42%), Gaps = 39/203 (19%)
Query: 236 FSNLTSLYLSSCGLHGAFPEKILQLPTLETLDLSYNELLQGSLPDFHQNLSLETLILSAT 295
FS L L L++ L P ++ L TL+ L LS N+ +NL +SA+
Sbjct: 277 FSGLQELDLTATHL-SELPSGLVGLSTLKKLVLSANKF---------ENLCQ----ISAS 322
Query: 296 NFSGILPDSIK--------------NLKNLSRVEFYLCNFNGPIPTS------MSDLSQL 335
NF + SIK NL+NL ++ + I TS + +LS L
Sbjct: 323 NFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLS----HDDIETSDCCNLQLRNLSHL 378
Query: 336 VYLDMSFNH-FSGPIPSLHMFRNLAYLDLSYNIFTGGISSIGWEQLLNLFHVDLSHNNLG 394
L++S+N S + L LDL++ + ++ L L ++LSH+ L
Sbjct: 379 QSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLD 438
Query: 395 GSIPQSLFELPMVQHLLLADNQF 417
S Q LP +QHL L N F
Sbjct: 439 ISSEQLFDGLPALQHLNLQGNHF 461
Score = 30.4 bits (67), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 92/214 (42%), Gaps = 34/214 (15%)
Query: 699 LRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNAS----RLHVL-ILR 753
L++L+L+ N+ + ++ C LE+LDL + VK+A LH+L +L
Sbjct: 378 LQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLK------VKDAQSPFQNLHLLKVLN 431
Query: 754 SNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQ 813
++ +IS + P LQ ++L N F QK + ++ L+ L
Sbjct: 432 LSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQK---------TNSLQTLGRLEILV 482
Query: 814 YRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSLCAL 873
F +LS + Q A T L + +D S N E + L+ + L
Sbjct: 483 LSFCDLS-SIDQHAFTS------------LKMMNHVDLSHNRLTSSSIEALSHLKGI-YL 528
Query: 874 NLSHNALTGSIPSLIGNLREIESLDLSMNNLSGT 907
NL+ N ++ +PSL+ L + +++L N L T
Sbjct: 529 NLASNHISIILPSLLPILSQQRTINLRQNPLDCT 562
>pdb|3TSR|E Chain E, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
pdb|3TSR|F Chain F, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
pdb|3TSR|G Chain G, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
pdb|3TSR|H Chain H, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
Length = 457
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 66/135 (48%), Gaps = 14/135 (10%)
Query: 153 LSGLLQNLAELRELYLDGVNISAPGIE-WCQALSSLVPKLQVLSLSGCFLSGP-VDPSLS 210
L G+L++L+ LREL+L+ + G++ C+ L +L+ L L C L+ +P S
Sbjct: 101 LPGMLRSLSTLRELHLNDNPMGDAGLKLLCEGLQDPQCRLEKLQLEYCNLTATSCEPLAS 160
Query: 211 NLRSLSVIR---LDMNDLYSPVPEFLAD-----FSNLTSLYLSSCGLHGAFPEKILQL-- 260
LR + + L NDL+ P L L SL L +CG+ A + + +
Sbjct: 161 VLRVKADFKELVLSNNDLHEPGVRILCQGLKDSACQLESLKLENCGITAANCKDLCDVVA 220
Query: 261 --PTLETLDLSYNEL 273
+L+ LDLS N+L
Sbjct: 221 SKASLQELDLSSNKL 235
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 38.5 bits (88), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 73/184 (39%), Gaps = 25/184 (13%)
Query: 136 LSGMYFVRAPLKLENPNLSGLLQNLAELRELYLDGVNISAPGIEWCQALSSLVPKLQVLS 195
L + R PL+ L + +L LREL I C L+ L L
Sbjct: 129 LETLTLARNPLRA----LPASIASLNRLREL----------SIRACPELTELPEPLASTD 174
Query: 196 LSGCFLSGPVDPSLSNLRSLSVIRLDMNDLYSPVPEFLADFSNLTSLYLSSCGLHGAFPE 255
SG L NL+SL RL+ + S +P +A+ NL SL + + L P
Sbjct: 175 ASGEHQG------LVNLQSL---RLEWTGIRS-LPASIANLQNLKSLKIRNSPLSALGP- 223
Query: 256 KILQLPTLETLDLSYNELLQGSLPDFHQNLSLETLILSATNFSGILPDSIKNLKNLSRVE 315
I LP LE LDL L+ P F L+ LIL + LP I L L +++
Sbjct: 224 AIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLD 283
Query: 316 FYLC 319
C
Sbjct: 284 LRGC 287
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 38.1 bits (87), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 57/183 (31%), Positives = 80/183 (43%), Gaps = 35/183 (19%)
Query: 252 AFPEKILQLPTLETLDLSYNEL-LQG--SLPDF------HQNLSLETLILSATNFSGI-- 300
AF E + LP+LE LDLS N L +G S DF + +LS +I ++NF G+
Sbjct: 340 AFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQ 397
Query: 301 ---LPDSIKNLKNLSRVEFYLCNFNGPIPTSMSDLSQLVYLDMSFNH----FSGPIPSLH 353
L NLK +S +L L L+YLD+S H F+G L
Sbjct: 398 LEHLDFQHSNLKQMSEFSVFL------------SLRNLIYLDISHTHTRVAFNGIFNGL- 444
Query: 354 MFRNLAYLDLSYNIFTGGISSIGWEQLLNLFHVDLSHNNLGGSIPQSLFELPMVQHLLLA 413
+L L ++ N F + +L NL +DLS L P + L +Q L +A
Sbjct: 445 --SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMA 502
Query: 414 DNQ 416
NQ
Sbjct: 503 SNQ 505
Score = 37.7 bits (86), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 57/124 (45%), Gaps = 1/124 (0%)
Query: 189 PKLQVLSLSGCFLSGPVDPSLSNLRSLSVIRLDMNDLYSPVPEFLADFSNLTSLYLSSCG 248
P+LQVL LS C + D + +L LS + L N + S + S+L L
Sbjct: 52 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN 111
Query: 249 LHGAFPEKILQLPTLETLDLSYNELLQGSLPDFHQNLS-LETLILSATNFSGILPDSIKN 307
L I L TL+ L++++N + LP++ NL+ LE L LS+ I ++
Sbjct: 112 LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV 171
Query: 308 LKNL 311
L +
Sbjct: 172 LHQM 175
Score = 33.1 bits (74), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 66/149 (44%), Gaps = 26/149 (17%)
Query: 769 SWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAI 828
S+P LQ++DL+ E +++G QS L HL L L+ Q
Sbjct: 50 SFPELQVLDLS--------------RCEIQTIEDGAYQS-LSHLST--LILTGNPIQSLA 92
Query: 829 TVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTG-SIPSL 887
GL L K++ + T++ S NF PI G L++L LN++HN + +P
Sbjct: 93 LGAFSGLS-SLQKLVAVETNLA-SLENF--PI----GHLKTLKELNVAHNLIQSFKLPEY 144
Query: 888 IGNLREIESLDLSMNNLSGTIPAQLASLN 916
NL +E LDLS N + L L+
Sbjct: 145 FSNLTNLEHLDLSSNKIQSIYCTDLRVLH 173
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Query: 212 LRSLSVIRLDMNDLYSP-VPEFLADFSNLTSLYLSSCGLHGAFPEKILQLPTLETLDLSY 270
L SL V+++ N +P+ + NLT L LS C L P L +L+ L+++
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMAS 503
Query: 271 NELLQGSLPD 280
N+L S+PD
Sbjct: 504 NQL--KSVPD 511
Score = 31.2 bits (69), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 70/175 (40%), Gaps = 26/175 (14%)
Query: 768 VSWPMLQIIDLASNKFS----------GRLPQKWL---LNLEAMMVDEGRSQSELKHLQY 814
V P L+ +DL+ N S G K+L N M +L+HL +
Sbjct: 344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDF 403
Query: 815 RFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSLCALN 874
+ NL Q +V + + I + T + F+ F G L SL L
Sbjct: 404 QHSNLKQM---SEFSVFLSLRNLIYLDISHTHTRVAFN-GIFNG--------LSSLEVLK 451
Query: 875 LSHNALTGS-IPSLIGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLNLSYNHL 928
++ N+ + +P + LR + LDLS L P SL+ L VLN++ N L
Sbjct: 452 MAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQL 506
Score = 29.6 bits (65), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 698 SLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNF 757
+L LDL+ QLE + P + + S L++L++ +NQ + L + L +N +
Sbjct: 471 NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPW 530
Query: 758 FGNISCPR 765
+ SCPR
Sbjct: 531 --DCSCPR 536
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 37.7 bits (86), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 57/124 (45%), Gaps = 1/124 (0%)
Query: 189 PKLQVLSLSGCFLSGPVDPSLSNLRSLSVIRLDMNDLYSPVPEFLADFSNLTSLYLSSCG 248
P+LQVL LS C + D + +L LS + L N + S + S+L L
Sbjct: 53 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN 112
Query: 249 LHGAFPEKILQLPTLETLDLSYNELLQGSLPDFHQNLS-LETLILSATNFSGILPDSIKN 307
L I L TL+ L++++N + LP++ NL+ LE L LS+ I ++
Sbjct: 113 LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV 172
Query: 308 LKNL 311
L +
Sbjct: 173 LHQM 176
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 66/149 (44%), Gaps = 26/149 (17%)
Query: 769 SWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAI 828
S+P LQ++DL+ E +++G QS L HL L L+ Q
Sbjct: 51 SFPELQVLDLS--------------RCEIQTIEDGAYQS-LSHLST--LILTGNPIQSLA 93
Query: 829 TVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTG-SIPSL 887
GL L K++ + T++ S NF PI G L++L LN++HN + +P
Sbjct: 94 LGAFSGLS-SLQKLVAVETNLA-SLENF--PI----GHLKTLKELNVAHNLIQSFKLPEY 145
Query: 888 IGNLREIESLDLSMNNLSGTIPAQLASLN 916
NL +E LDLS N + L L+
Sbjct: 146 FSNLTNLEHLDLSSNKIQSIYCTDLRVLH 174
>pdb|1WWL|A Chain A, Crystal Structure Of Cd14
pdb|1WWL|B Chain B, Crystal Structure Of Cd14
Length = 312
Score = 37.7 bits (86), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 58/238 (24%), Positives = 92/238 (38%), Gaps = 59/238 (24%)
Query: 745 SRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGR 804
S L L L + G P + P L I++L + ++ R WL L+ +
Sbjct: 95 SGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR--DAWLAELQQWL----- 147
Query: 805 SQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEM 864
+ L+++QA+ + + ++ +++D S N G E
Sbjct: 148 ------KPGLKVLSIAQAHSLN--------FSCEQVRVFPALSTLDLSDNPELG----ER 189
Query: 865 GLLQSLCAL-----------NLSHNALTGSIPSLIGNLREIESLDLSMNNL-------SG 906
GL+ +LC L N +G +L +++ LDLS N+L S
Sbjct: 190 GLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSC 249
Query: 907 TIPAQLASLNF---------------LSVLNLSYNHLVGRIPTSTQLQSFLATSFEGN 949
P+QL SLN LSVL+LSYN L R P+ +L S +GN
Sbjct: 250 DWPSQLNSLNLSFTGLKQVPKGLPAKLSVLDLSYNRL-DRNPSPDELPQVGNLSLKGN 306
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 37.7 bits (86), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 57/124 (45%), Gaps = 1/124 (0%)
Query: 189 PKLQVLSLSGCFLSGPVDPSLSNLRSLSVIRLDMNDLYSPVPEFLADFSNLTSLYLSSCG 248
P+LQVL LS C + D + +L LS + L N + S + S+L L
Sbjct: 54 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN 113
Query: 249 LHGAFPEKILQLPTLETLDLSYNELLQGSLPDFHQNLS-LETLILSATNFSGILPDSIKN 307
L I L TL+ L++++N + LP++ NL+ LE L LS+ I ++
Sbjct: 114 LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV 173
Query: 308 LKNL 311
L +
Sbjct: 174 LHQM 177
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 66/149 (44%), Gaps = 26/149 (17%)
Query: 769 SWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAI 828
S+P LQ++DL+ E +++G QS L HL L L+ Q
Sbjct: 52 SFPELQVLDLS--------------RCEIQTIEDGAYQS-LSHLST--LILTGNPIQSLA 94
Query: 829 TVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTG-SIPSL 887
GL L K++ + T++ S NF PI G L++L LN++HN + +P
Sbjct: 95 LGAFSGLS-SLQKLVAVETNLA-SLENF--PI----GHLKTLKELNVAHNLIQSFKLPEY 146
Query: 888 IGNLREIESLDLSMNNLSGTIPAQLASLN 916
NL +E LDLS N + L L+
Sbjct: 147 FSNLTNLEHLDLSSNKIQSIYCTDLRVLH 175
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 37.7 bits (86), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 57/124 (45%), Gaps = 1/124 (0%)
Query: 189 PKLQVLSLSGCFLSGPVDPSLSNLRSLSVIRLDMNDLYSPVPEFLADFSNLTSLYLSSCG 248
P+LQVL LS C + D + +L LS + L N + S + S+L L
Sbjct: 76 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN 135
Query: 249 LHGAFPEKILQLPTLETLDLSYNELLQGSLPDFHQNLS-LETLILSATNFSGILPDSIKN 307
L I L TL+ L++++N + LP++ NL+ LE L LS+ I ++
Sbjct: 136 LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV 195
Query: 308 LKNL 311
L +
Sbjct: 196 LHQM 199
Score = 36.2 bits (82), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 80/184 (43%), Gaps = 35/184 (19%)
Query: 252 AFPEKILQLPTLETLDLSYNEL-LQG--SLPDF------HQNLSLETLILSATNFSGI-- 300
AF E + LP+LE LDLS N L +G S DF + +LS +I ++NF G+
Sbjct: 364 AFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQ 421
Query: 301 ---LPDSIKNLKNLSRVEFYLCNFNGPIPTSMSDLSQLVYLDMSFNH----FSGPIPSLH 353
L NLK +S +L L L+YLD+S H F+G L
Sbjct: 422 LEHLDFQHSNLKQMSEFSVFL------------SLRNLIYLDISHTHTRVAFNGIFNGL- 468
Query: 354 MFRNLAYLDLSYNIFTGGISSIGWEQLLNLFHVDLSHNNLGGSIPQSLFELPMVQHLLLA 413
+L L ++ N F + +L NL +DLS L P + L +Q L ++
Sbjct: 469 --SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMS 526
Query: 414 DNQF 417
N F
Sbjct: 527 HNNF 530
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 85/200 (42%), Gaps = 28/200 (14%)
Query: 768 VSWPMLQIIDLASNKFS----------GRLPQKWL---LNLEAMMVDEGRSQSELKHLQY 814
V P L+ +DL+ N S G + K+L N M +L+HL +
Sbjct: 368 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDF 427
Query: 815 RFLNLSQAY-------YQDAITVTIKGLEMKLA--KILNIFTSIDFSR---NNF-EGPIP 861
+ NL Q ++ I + I ++A I N +S++ + N+F E +P
Sbjct: 428 QHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP 487
Query: 862 EEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLASLNFLSVL 921
+ L++L L+LS L P+ +L ++ L++S NN LN L VL
Sbjct: 488 DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVL 547
Query: 922 NLSYNHLVGRIPTSTQLQSF 941
+ S NH++ +LQ F
Sbjct: 548 DYSLNHIM--TSKKQELQHF 565
Score = 32.7 bits (73), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 66/149 (44%), Gaps = 26/149 (17%)
Query: 769 SWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAI 828
S+P LQ++DL+ E +++G QS L HL L L+ Q
Sbjct: 74 SFPELQVLDLS--------------RCEIQTIEDGAYQS-LSHLST--LILTGNPIQSLA 116
Query: 829 TVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTG-SIPSL 887
GL L K++ + T++ S NF PI G L++L LN++HN + +P
Sbjct: 117 LGAFSGLS-SLQKLVAVETNLA-SLENF--PI----GHLKTLKELNVAHNLIQSFKLPEY 168
Query: 888 IGNLREIESLDLSMNNLSGTIPAQLASLN 916
NL +E LDLS N + L L+
Sbjct: 169 FSNLTNLEHLDLSSNKIQSIYCTDLRVLH 197
Score = 30.8 bits (68), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 37/85 (43%), Gaps = 3/85 (3%)
Query: 698 SLRTLDLNGNQL-EGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNN 756
SL L + GN E +P L LDL Q + P + S L VL + NN
Sbjct: 470 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN 529
Query: 757 FFGNISCPRYNVSWPMLQIIDLASN 781
FF + P ++ LQ++D + N
Sbjct: 530 FFSLDTFPYKCLN--SLQVLDYSLN 552
Score = 29.6 bits (65), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 50/123 (40%), Gaps = 12/123 (9%)
Query: 639 IPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQXXXXXXXXXXXXXTVSATFPANC- 697
+P+ NL LDLS L + PT ++S Q TFP C
Sbjct: 486 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL----DTFPYKCL 541
Query: 698 -SLRTLDLNGNQLEGMVPKSLANC-SVLEILDLGNNQF-----DDTFPCWVKNASRLHVL 750
SL+ LD + N + + L + S L L+L N F +F W+K+ +L V
Sbjct: 542 NSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVE 601
Query: 751 ILR 753
+ R
Sbjct: 602 VER 604
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 37.4 bits (85), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 69/261 (26%), Positives = 116/261 (44%), Gaps = 44/261 (16%)
Query: 704 LNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSN-------- 755
+N NQ+ + P LAN + L L L NNQ D P +KN + L+ L L SN
Sbjct: 92 MNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISAL 147
Query: 756 ---------NFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQ 806
NF ++ + + L+ +D++SNK S L NLE+++ +
Sbjct: 148 SGLTSLQQLNFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQI- 206
Query: 807 SELKHLQYRFLNLSQAYYQDAITVTIKGLEMK----LAKILNIFTSIDFSRNNFEGPIPE 862
S++ L NL + +++ G ++K LA + N+ T +D + N P
Sbjct: 207 SDITPLGI-LTNLDE--------LSLNGNQLKDIGTLASLTNL-TDLDLANNQISNLAP- 255
Query: 863 EMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLN 922
+ L L L L N ++ P + L + +L+L+ N L P +++L L+ L
Sbjct: 256 -LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLT 310
Query: 923 LSYNHLVGRIPTS--TQLQSF 941
L +N++ P S T+LQ
Sbjct: 311 LYFNNISDISPVSSLTKLQRL 331
Score = 33.1 bits (74), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 84/335 (25%), Positives = 126/335 (37%), Gaps = 98/335 (29%)
Query: 471 ELDAIQRLRNLFRLDLSYNRLAVVA-------------GSSVYCFPPL--LTTLS---LA 512
++D ++ L NL RL+LS N ++ ++ G+ V PL LTTL ++
Sbjct: 121 DIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFGNQVTDLKPLANLTTLERLDIS 180
Query: 513 SCKLSAIPNLRKQTKLYHLDLSDNQISGEIP--------------NWLWKIGKDSFXXXX 558
S K+S I L K T L L ++NQIS P N L IG
Sbjct: 181 SNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG-------- 232
Query: 559 XXXXXXXXXEQPYSISDLTSLSVLDLHSNQIQGKIPPLPPNAAYVDYS-GNNFTSSIPVD 617
+++ LT+L+ LDL +NQI + PL + G N S+I
Sbjct: 233 -------------TLASLTNLTDLDLANNQI-SNLAPLSGLTKLTELKLGANQISNISPL 278
Query: 618 IGXXXXXXXXXXXXKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQXXX 677
G +N L + P I N NL L L +N +S + P +
Sbjct: 279 AGLTALTNLELN--ENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSSL--------- 325
Query: 678 XXXXXXXXXXTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTF 737
L+ L N++ + SLAN + + L G+NQ D
Sbjct: 326 -------------------TKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLT 364
Query: 738 PCWVKNASRLHVLILRSN-------NFFGNISCPR 765
P + N +R+ L L N+ N+S P
Sbjct: 365 P--LANLTRITQLGLNDQAWTNAPVNYKANVSIPN 397
Score = 29.6 bits (65), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 73/163 (44%), Gaps = 15/163 (9%)
Query: 205 VDPSLSNLRSLSVIRLDMNDLYSPVPEFLADFSNLTSLYLSSCGLHGAFPEKILQLPTLE 264
+DP L NL +L+ + L N + ++ S LTSL + G + + L TLE
Sbjct: 122 IDP-LKNLTNLNRLELSSNTISD-----ISALSGLTSLQQLNFGNQVTDLKPLANLTTLE 175
Query: 265 TLDLSYNELLQGSLPDFHQNLSLETLILSATNFSGILPDSI-KNLKNLSRVEFYLCNFNG 323
LD+S N++ S+ + +LE+LI + S I P I NL LS L +
Sbjct: 176 RLDISSNKVSDISV--LAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG- 232
Query: 324 PIPTSMSDLSQLVYLDMSFNHFSGPIPSLHMFRNLAYLDLSYN 366
+++ L+ L LD++ N S P L L L L N
Sbjct: 233 ----TLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGAN 270
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 37.4 bits (85), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 69/261 (26%), Positives = 116/261 (44%), Gaps = 44/261 (16%)
Query: 704 LNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSN-------- 755
+N NQ+ + P LAN + L L L NNQ D P +KN + L+ L L SN
Sbjct: 92 MNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISAL 147
Query: 756 ---------NFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQ 806
NF ++ + + L+ +D++SNK S L NLE+++ +
Sbjct: 148 SGLTSLQQLNFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQI- 206
Query: 807 SELKHLQYRFLNLSQAYYQDAITVTIKGLEMK----LAKILNIFTSIDFSRNNFEGPIPE 862
S++ L NL + +++ G ++K LA + N+ T +D + N P
Sbjct: 207 SDITPLGI-LTNLDE--------LSLNGNQLKDIGTLASLTNL-TDLDLANNQISNLAP- 255
Query: 863 EMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLN 922
+ L L L L N ++ P + L + +L+L+ N L P +++L L+ L
Sbjct: 256 -LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLT 310
Query: 923 LSYNHLVGRIPTS--TQLQSF 941
L +N++ P S T+LQ
Sbjct: 311 LYFNNISDISPVSSLTKLQRL 331
Score = 34.3 bits (77), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 84/335 (25%), Positives = 127/335 (37%), Gaps = 98/335 (29%)
Query: 471 ELDAIQRLRNLFRLDLSYNRLAVVA-------------GSSVYCFPPL--LTTLS---LA 512
++D ++ L NL RL+LS N ++ ++ G+ V PL LTTL ++
Sbjct: 121 DIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFGNQVTDLKPLANLTTLERLDIS 180
Query: 513 SCKLSAIPNLRKQTKLYHLDLSDNQISGEIP--------------NWLWKIGKDSFXXXX 558
S K+S I L K T L L ++NQIS P N L IG
Sbjct: 181 SNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG-------- 232
Query: 559 XXXXXXXXXEQPYSISDLTSLSVLDLHSNQIQGKIPPLPPNAAYVDYS-GNNFTSSIPVD 617
+++ LT+L+ LDL +NQI + PL + G N S+I
Sbjct: 233 -------------TLASLTNLTDLDLANNQI-SNLAPLSGLTKLTELKLGANQISNISPL 278
Query: 618 IGXXXXXXXXXXXXKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQXXX 677
G +N L + P I N NL L L +N +S + P +
Sbjct: 279 AGLTALTNLELN--ENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSSL--------- 325
Query: 678 XXXXXXXXXXTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTF 737
L+ L + N++ + SLAN + + L G+NQ D
Sbjct: 326 -------------------TKLQRLFFSNNKVSDV--SSLANLTNINWLSAGHNQISDLT 364
Query: 738 PCWVKNASRLHVLILRSN-------NFFGNISCPR 765
P + N +R+ L L N+ N+S P
Sbjct: 365 P--LANLTRITQLGLNDQAWTNAPVNYKANVSIPN 397
Score = 29.6 bits (65), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 73/163 (44%), Gaps = 15/163 (9%)
Query: 205 VDPSLSNLRSLSVIRLDMNDLYSPVPEFLADFSNLTSLYLSSCGLHGAFPEKILQLPTLE 264
+DP L NL +L+ + L N + ++ S LTSL + G + + L TLE
Sbjct: 122 IDP-LKNLTNLNRLELSSNTISD-----ISALSGLTSLQQLNFGNQVTDLKPLANLTTLE 175
Query: 265 TLDLSYNELLQGSLPDFHQNLSLETLILSATNFSGILPDSI-KNLKNLSRVEFYLCNFNG 323
LD+S N++ S+ + +LE+LI + S I P I NL LS L +
Sbjct: 176 RLDISSNKVSDISV--LAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG- 232
Query: 324 PIPTSMSDLSQLVYLDMSFNHFSGPIPSLHMFRNLAYLDLSYN 366
+++ L+ L LD++ N S P L L L L N
Sbjct: 233 ----TLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGAN 270
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 37.4 bits (85), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 57/124 (45%), Gaps = 1/124 (0%)
Query: 189 PKLQVLSLSGCFLSGPVDPSLSNLRSLSVIRLDMNDLYSPVPEFLADFSNLTSLYLSSCG 248
P+LQVL LS C + D + +L LS + L N + S + S+L L
Sbjct: 53 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN 112
Query: 249 LHGAFPEKILQLPTLETLDLSYNELLQGSLPDFHQNLS-LETLILSATNFSGILPDSIKN 307
L I L TL+ L++++N + LP++ NL+ LE L LS+ I ++
Sbjct: 113 LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV 172
Query: 308 LKNL 311
L +
Sbjct: 173 LHQM 176
Score = 32.7 bits (73), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 66/149 (44%), Gaps = 26/149 (17%)
Query: 769 SWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAI 828
S+P LQ++DL+ E +++G QS L HL L L+ Q
Sbjct: 51 SFPELQVLDLS--------------RCEIQTIEDGAYQS-LSHLST--LILTGNPIQSLA 93
Query: 829 TVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTG-SIPSL 887
GL L K++ + T++ S NF PI G L++L LN++HN + +P
Sbjct: 94 LGAFSGLS-SLQKLVAVETNLA-SLENF--PI----GHLKTLKELNVAHNLIQSFKLPEY 145
Query: 888 IGNLREIESLDLSMNNLSGTIPAQLASLN 916
NL +E LDLS N + L L+
Sbjct: 146 FSNLTNLEHLDLSSNKIQSIYCTDLRVLH 174
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 37.4 bits (85), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 59/204 (28%), Positives = 93/204 (45%), Gaps = 20/204 (9%)
Query: 208 SLSNLRSLSVIRLDMNDLYSPVPEFLADFSNLTSLYLSSCGL----HGAFPEKILQLPTL 263
S +LR L +++L N + + +NL +L L L +GAF + L L
Sbjct: 83 SFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAF----VYLSKL 138
Query: 264 ETLDLSYNELLQGSLPDFHQNL--SLETLILSA-TNFSGILPDSIKNLKNLSRVEFYLCN 320
+ L L N + S+P + N SL L L S I + + L NL + +CN
Sbjct: 139 KELWLRNNPI--ESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN 196
Query: 321 FNGPIPTSMSDLSQLVYLDMSFNHFSGPIPSLHMFRNLAYLDLSYNIFTG--GISSIGWE 378
IP +++ L +L LD+S NH S P F+ L +L + I + I ++
Sbjct: 197 LR-EIP-NLTPLIKLDELDLSGNHLSAIRPG--SFQGLMHLQKLWMIQSQIQVIERNAFD 252
Query: 379 QLLNLFHVDLSHNNLGGSIPQSLF 402
L +L ++L+HNNL +P LF
Sbjct: 253 NLQSLVEINLAHNNL-TLLPHDLF 275
Score = 36.2 bits (82), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 38/73 (52%), Gaps = 6/73 (8%)
Query: 474 AIQRLRNLFRLDL-SYNRLAVVAGSSVYCFPPL--LTTLSLASCKLSAIPNLRKQTKLYH 530
A R+ +L RLDL RL+ ++ + F L L L+LA C L IPNL KL
Sbjct: 155 AFNRIPSLRRLDLGELKRLSYISEGA---FEGLSNLRYLNLAMCNLREIPNLTPLIKLDE 211
Query: 531 LDLSDNQISGEIP 543
LDLS N +S P
Sbjct: 212 LDLSGNHLSAIRP 224
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 37.4 bits (85), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 57/124 (45%), Gaps = 1/124 (0%)
Query: 189 PKLQVLSLSGCFLSGPVDPSLSNLRSLSVIRLDMNDLYSPVPEFLADFSNLTSLYLSSCG 248
P+LQVL LS C + D + +L LS + L N + S + S+L L
Sbjct: 52 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN 111
Query: 249 LHGAFPEKILQLPTLETLDLSYNELLQGSLPDFHQNLS-LETLILSATNFSGILPDSIKN 307
L I L TL+ L++++N + LP++ NL+ LE L LS+ I ++
Sbjct: 112 LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV 171
Query: 308 LKNL 311
L +
Sbjct: 172 LHQM 175
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 66/149 (44%), Gaps = 26/149 (17%)
Query: 769 SWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAI 828
S+P LQ++DL+ E +++G QS L HL L L+ Q
Sbjct: 50 SFPELQVLDLS--------------RCEIQTIEDGAYQS-LSHLST--LILTGNPIQSLA 92
Query: 829 TVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTG-SIPSL 887
GL L K++ + T++ S NF PI G L++L LN++HN + +P
Sbjct: 93 LGAFSGLS-SLQKLVAVETNLA-SLENF--PI----GHLKTLKELNVAHNLIQSFKLPEY 144
Query: 888 IGNLREIESLDLSMNNLSGTIPAQLASLN 916
NL +E LDLS N + L L+
Sbjct: 145 FSNLTNLEHLDLSSNKIQSIYCTDLRVLH 173
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 37.0 bits (84), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 57/124 (45%), Gaps = 1/124 (0%)
Query: 189 PKLQVLSLSGCFLSGPVDPSLSNLRSLSVIRLDMNDLYSPVPEFLADFSNLTSLYLSSCG 248
P+LQVL LS C + D + +L LS + L N + S + S+L L
Sbjct: 52 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN 111
Query: 249 LHGAFPEKILQLPTLETLDLSYNELLQGSLPDFHQNLS-LETLILSATNFSGILPDSIKN 307
L I L TL+ L++++N + LP++ NL+ LE L LS+ I ++
Sbjct: 112 LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV 171
Query: 308 LKNL 311
L +
Sbjct: 172 LHQM 175
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 80/184 (43%), Gaps = 35/184 (19%)
Query: 252 AFPEKILQLPTLETLDLSYNEL-LQG--SLPDF------HQNLSLETLILSATNFSGI-- 300
AF E + LP+LE LDLS N L +G S DF + +LS +I ++NF G+
Sbjct: 340 AFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQ 397
Query: 301 ---LPDSIKNLKNLSRVEFYLCNFNGPIPTSMSDLSQLVYLDMSFNH----FSGPIPSLH 353
L NLK +S +L L L+YLD+S H F+G L
Sbjct: 398 LEHLDFQHSNLKQMSEFSVFL------------SLRNLIYLDISHTHTRVAFNGIFNGL- 444
Query: 354 MFRNLAYLDLSYNIFTGGISSIGWEQLLNLFHVDLSHNNLGGSIPQSLFELPMVQHLLLA 413
+L L ++ N F + +L NL +DLS L P + L +Q L ++
Sbjct: 445 --SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMS 502
Query: 414 DNQF 417
N F
Sbjct: 503 HNNF 506
Score = 33.9 bits (76), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 84/200 (42%), Gaps = 28/200 (14%)
Query: 768 VSWPMLQIIDLASNKFS----------GRLPQKWL---LNLEAMMVDEGRSQSELKHLQY 814
V P L+ +DL+ N S G K+L N M +L+HL +
Sbjct: 344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDF 403
Query: 815 RFLNLSQAY-------YQDAITVTIKGLEMKLA--KILNIFTSIDFSR---NNF-EGPIP 861
+ NL Q ++ I + I ++A I N +S++ + N+F E +P
Sbjct: 404 QHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP 463
Query: 862 EEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLASLNFLSVL 921
+ L++L L+LS L P+ +L ++ L++S NN LN L VL
Sbjct: 464 DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVL 523
Query: 922 NLSYNHLVGRIPTSTQLQSF 941
+ S NH++ +LQ F
Sbjct: 524 DYSLNHIM--TSKKQELQHF 541
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 66/149 (44%), Gaps = 26/149 (17%)
Query: 769 SWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAI 828
S+P LQ++DL+ E +++G QS L HL L L+ Q
Sbjct: 50 SFPELQVLDLS--------------RCEIQTIEDGAYQS-LSHLST--LILTGNPIQSLA 92
Query: 829 TVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTG-SIPSL 887
GL L K++ + T++ S NF PI G L++L LN++HN + +P
Sbjct: 93 LGAFSGLS-SLQKLVAVETNLA-SLENF--PI----GHLKTLKELNVAHNLIQSFKLPEY 144
Query: 888 IGNLREIESLDLSMNNLSGTIPAQLASLN 916
NL +E LDLS N + L L+
Sbjct: 145 FSNLTNLEHLDLSSNKIQSIYCTDLRVLH 173
Score = 30.4 bits (67), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 37/85 (43%), Gaps = 3/85 (3%)
Query: 698 SLRTLDLNGNQL-EGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNN 756
SL L + GN E +P L LDL Q + P + S L VL + NN
Sbjct: 446 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN 505
Query: 757 FFGNISCPRYNVSWPMLQIIDLASN 781
FF + P ++ LQ++D + N
Sbjct: 506 FFSLDTFPYKCLNS--LQVLDYSLN 528
Score = 29.6 bits (65), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 50/123 (40%), Gaps = 12/123 (9%)
Query: 639 IPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQXXXXXXXXXXXXXTVSATFPANC- 697
+P+ NL LDLS L + PT ++S Q TFP C
Sbjct: 462 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL----DTFPYKCL 517
Query: 698 -SLRTLDLNGNQLEGMVPKSLANC-SVLEILDLGNNQF-----DDTFPCWVKNASRLHVL 750
SL+ LD + N + + L + S L L+L N F +F W+K+ +L V
Sbjct: 518 NSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVE 577
Query: 751 ILR 753
+ R
Sbjct: 578 VER 580
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 37.0 bits (84), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 57/124 (45%), Gaps = 1/124 (0%)
Query: 189 PKLQVLSLSGCFLSGPVDPSLSNLRSLSVIRLDMNDLYSPVPEFLADFSNLTSLYLSSCG 248
P+LQVL LS C + D + +L LS + L N + S + S+L L
Sbjct: 54 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVALETN 113
Query: 249 LHGAFPEKILQLPTLETLDLSYNELLQGSLPDFHQNLS-LETLILSATNFSGILPDSIKN 307
L I L TL+ L++++N + LP++ NL+ LE L LS+ I ++
Sbjct: 114 LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV 173
Query: 308 LKNL 311
L +
Sbjct: 174 LHQM 177
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 66/149 (44%), Gaps = 26/149 (17%)
Query: 769 SWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAI 828
S+P LQ++DL+ E +++G QS L HL L L+ Q
Sbjct: 52 SFPELQVLDLS--------------RCEIQTIEDGAYQS-LSHLST--LILTGNPIQSLA 94
Query: 829 TVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTG-SIPSL 887
GL L K++ + T++ S NF PI G L++L LN++HN + +P
Sbjct: 95 LGAFSGLS-SLQKLVALETNLA-SLENF--PI----GHLKTLKELNVAHNLIQSFKLPEY 146
Query: 888 IGNLREIESLDLSMNNLSGTIPAQLASLN 916
NL +E LDLS N + L L+
Sbjct: 147 FSNLTNLEHLDLSSNKIQSIYCTDLRVLH 175
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 36.6 bits (83), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 85/325 (26%), Positives = 130/325 (40%), Gaps = 54/325 (16%)
Query: 127 GMTRLVTLDLSGMYFVRAPLKLENPNLSGLLQ-NLAELRELYLDGVNISAPGIEWCQALS 185
G++ L+ L L F L+LE +GL + L + LDG +S + +L
Sbjct: 77 GLSSLIILKLDYNQF----LQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLE 132
Query: 186 SLVPK---LQVLSLSGCFLSGPVDPSLSNLRSLSVIRLDMNDLYSPVPEFLADF--SNLT 240
LV + ++ + + FL N+R V+ L N + S E L +F + T
Sbjct: 133 MLVLRDNNIKKIQPASFFL---------NMRRFHVLDLTFNKVKSICEEDLLNFQGKHFT 183
Query: 241 SLYLSSCGLHGAFP-----EKI---LQLPTLETLDLSYNELLQGSLPDFHQNLS---LET 289
L LSS L EK + ++ TLDLS N + F ++ +++
Sbjct: 184 LLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQS 243
Query: 290 LILS----------ATNFSGILPDSIKNLKNLSRVEFYLCNFNGP--------IPTSMSD 331
LILS TNF PD+ K L C+ + + + +D
Sbjct: 244 LILSNSYNMGSSFGHTNFKD--PDNF-TFKGLEASGVKTCDLSKSKIFALLKSVFSHFTD 300
Query: 332 LSQLVYLDMSFNHFSGPIPSLHMFRNLAYLDLSYNIFTGGISSIGWEQLLNLFHVDLSHN 391
L QL N + +L L+LS N F G I S +E L L +DLS+N
Sbjct: 301 LEQLTLAQNEINKIDDN--AFWGLTHLLKLNLSQN-FLGSIDSRMFENLDKLEVLDLSYN 357
Query: 392 NLGGSIPQSLFELPMVQHLLLADNQ 416
++ QS LP ++ L L NQ
Sbjct: 358 HIRALGDQSFLGLPNLKELALDTNQ 382
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 68/351 (19%), Positives = 119/351 (33%), Gaps = 29/351 (8%)
Query: 592 KIPPLPPNAAYVDYSGNNFTSSIPVDIGXXXXXXXXXXXXKNSLTGVIPESICNATNLLV 651
++P LP + YVD S N+ + + + ++L++
Sbjct: 24 QVPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLII 83
Query: 652 LDLSYNYLSGMIPTCLINMSDSQXXXXXXXXXXXXXTVSATFPANCSLRTLDLNGNQLEG 711
L L YN + +++ + F SL L L N ++
Sbjct: 84 LKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKK 143
Query: 712 MVPKSL-ANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSW 770
+ P S N +LDL N+ + N H +LR +I+ N W
Sbjct: 144 IQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLR----LSSITLQDMNEYW 199
Query: 771 ------------PMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRF-L 817
+ +DL+ N F + +++ + + QS + Y
Sbjct: 200 LGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKI-----QSLILSNSYNMGS 254
Query: 818 NLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSH 877
+ ++D T KGLE K + D S++ + L L L+
Sbjct: 255 SFGHTNFKDPDNFTFKGLEASGVK------TCDLSKSKIFALLKSVFSHFTDLEQLTLAQ 308
Query: 878 NALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLNLSYNHL 928
N + + L + L+LS N L +L+ L VL+LSYNH+
Sbjct: 309 NEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHI 359
Score = 30.4 bits (67), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 466 FVGTIELDAIQRLRNLFRLDLSYNRLAVVAGSSVYCFPPLLTTLSLASCKLSAIPN 521
F+G+I+ + L L LDLSYN + + S P L L+L + +L ++P+
Sbjct: 334 FLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPN-LKELALDTNQLKSVPD 388
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 286 SLETLILSATNF-SGILPDSIKNLKNLSRVEFYLCNFNGPIPTSMSDLSQLVYLDMSFNH 344
SLE L ++ +F LPD L+NL+ ++ C PT+ + LS L L+MS N+
Sbjct: 151 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN 210
Query: 345 F 345
F
Sbjct: 211 F 211
Score = 33.9 bits (76), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 57/215 (26%), Positives = 84/215 (39%), Gaps = 43/215 (20%)
Query: 214 SLSVIRLDMNDLYSPVPEFLADFSNLTSLYLSSCGL--HGAFPEKILQLPTLETLDLSYN 271
S + + L+ N L S + LT L LSS GL G + +L+ LDLS+N
Sbjct: 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88
Query: 272 ELLQGSLPDFHQNLSLETLILSATNFSGI-----LPDSIKNLKNLSRVEFYLCNFNGPIP 326
+I ++NF G+ L NLK +S +L
Sbjct: 89 -----------------GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL-------- 123
Query: 327 TSMSDLSQLVYLDMSFNH----FSGPIPSLHMFRNLAYLDLSYNIFTGGISSIGWEQLLN 382
L L+YLD+S H F+G L +L L ++ N F + +L N
Sbjct: 124 ----SLRNLIYLDISHTHTRVAFNGIFNGL---SSLEVLKMAGNSFQENFLPDIFTELRN 176
Query: 383 LFHVDLSHNNLGGSIPQSLFELPMVQHLLLADNQF 417
L +DLS L P + L +Q L ++ N F
Sbjct: 177 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 211
Score = 32.7 bits (73), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 68/147 (46%), Gaps = 15/147 (10%)
Query: 808 ELKHLQYRFLNLSQAY-------YQDAITVTIKGLEMKLA--KILNIFTSIDFSR---NN 855
+L+HL ++ NL Q ++ I + I ++A I N +S++ + N+
Sbjct: 102 QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS 161
Query: 856 F-EGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLAS 914
F E +P+ L++L L+LS L P+ +L ++ L++S NN
Sbjct: 162 FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKC 221
Query: 915 LNFLSVLNLSYNHLVGRIPTSTQLQSF 941
LN L VL+ S NH++ +LQ F
Sbjct: 222 LNSLQVLDYSLNHIM--TSKKQELQHF 246
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 55/224 (24%), Positives = 94/224 (41%), Gaps = 5/224 (2%)
Query: 189 PKLQVLSLSGCFLSGPVDPSLSNLRSLSVIRLDMNDLYSPVPEFLADFSNLTSLYLSSCG 248
P L+ L L+ +S + +NL +L + L N L SNLT L +S
Sbjct: 56 PHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENK 115
Query: 249 LHGAFPEKILQLPTLETLDLSYNELLQGSLPDFHQNLSLETLILSATNFSGILPDSIKNL 308
+ L L++L++ N+L+ S F SLE L L N + I +++ +L
Sbjct: 116 IVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHL 175
Query: 309 KNLSRVEFYLCNFNGPIPTSMSDLSQLVYLDMS-FNHFSGPIPSLHMFRNLAYLDLSYNI 367
L + N N S L +L L++S + + P+ NL L +++
Sbjct: 176 HGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCN 235
Query: 368 FTGGISSIGWEQLLNLFHVDLSHN---NLGGSIPQSLFELPMVQ 408
T + + L+ L ++LS+N + GS+ L L +Q
Sbjct: 236 LT-AVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQ 278
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 68/155 (43%), Gaps = 10/155 (6%)
Query: 160 LAELRELYLDGVNISAPGIEWCQALSSLVPKLQVLSLSGCFLSGPVDPSLSNLRSLSVIR 219
L L +L L+ N+++ E L L+ VL L ++ D S L L V+
Sbjct: 151 LNSLEQLTLEKCNLTSIPTEALSHLHGLI----VLRLRHLNINAIRDYSFKRLYRLKVLE 206
Query: 220 LDM-NDLYSPVPEFLADFSNLTSLYLSSCGLHGAFPEKILQLPTLETLDLSYNEL--LQG 276
+ L + P L NLTSL ++ C L + L L L+LSYN + ++G
Sbjct: 207 ISHWPYLDTMTPNCLYGL-NLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEG 265
Query: 277 SLPDFHQNLSLETLILSATNFSGILPDSIKNLKNL 311
S+ H+ L L+ + L + + P + + L L
Sbjct: 266 SM--LHELLRLQEIQLVGGQLAVVEPYAFRGLNYL 298
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 60/139 (43%), Gaps = 10/139 (7%)
Query: 792 LLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVT-IKGLEMKLAKILNIFTSID 850
+L L + ++ R S + + + L +S Y D +T + GL + TS+
Sbjct: 180 VLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNL---------TSLS 230
Query: 851 FSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPA 910
+ N + L L LNLS+N ++ S++ L ++ + L L+ P
Sbjct: 231 ITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPY 290
Query: 911 QLASLNFLSVLNLSYNHLV 929
LN+L VLN+S N L
Sbjct: 291 AFRGLNYLRVLNVSGNQLT 309
Score = 30.4 bits (67), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 11/89 (12%)
Query: 506 LTTLSLASCKLSAIPNL--RKQTKLYHLDLSDNQIS---GEIPNWLWKIGKDSFXXXXXX 560
LT+LS+ C L+A+P L R L L+LS N IS G + + L ++ +
Sbjct: 226 LTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLA 285
Query: 561 XXXXXXXEQPYSISDLTSLSVLDLHSNQI 589
+PY+ L L VL++ NQ+
Sbjct: 286 VV------EPYAFRGLNYLRVLNVSGNQL 308
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 46/208 (22%), Positives = 80/208 (38%), Gaps = 10/208 (4%)
Query: 633 NSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQXXXXXXXXXXXXXTVSAT 692
NS+ + NL+ LDLS+N LS + + + Q +
Sbjct: 117 NSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELD 176
Query: 693 FPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFP---CWVKNASRLHV 749
AN SL+ L+L+ NQ++ P L L L N Q + C + +
Sbjct: 177 IFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRN 236
Query: 750 LILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFS--GRLPQKWLLNLEAMMVDEGRSQS 807
L L ++ + + W L ++DL+ N + G WL LE ++ Q
Sbjct: 237 LSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQH 296
Query: 808 ELKH-----LQYRFLNLSQAYYQDAITV 830
H R+LNL +++ + +I++
Sbjct: 297 LFSHSLHGLFNVRYLNLKRSFTKQSISL 324
Score = 32.7 bits (73), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 77/183 (42%), Gaps = 18/183 (9%)
Query: 207 PSLSNL--RSLSVIRLDMNDLYSPVPEFLADFSNLTSLYLSSCGLHGAFPEKILQLPTLE 264
PSL L R +++ +D SP P NLT L LS+ + + + L LE
Sbjct: 464 PSLQRLMLRRVALKNVDS----SPSP--FQPLRNLTILDLSNNNIANINDDMLEGLEKLE 517
Query: 265 TLDLSYNELLQ-------GSLPDFHQNLS-LETLILSATNFSGILPDSIKNLKNLSRVEF 316
LDL +N L + G F + LS L L L + F I + K+L L ++
Sbjct: 518 ILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDL 577
Query: 317 YLCNFNGPIPTSMSDLSQLVYLDMSFNHFSGPIPSLH--MFRNLAYLDLSYNIFTGGISS 374
L N N + ++ L L++ N + + FRNL LD+ +N F S
Sbjct: 578 GLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES 637
Query: 375 IGW 377
I W
Sbjct: 638 IAW 640
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 29/60 (48%)
Query: 869 SLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLNLSYNHL 928
++ LNL+HN L + ++ SLD+ N +S P L L VLNL +N L
Sbjct: 36 NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL 95
Score = 30.8 bits (68), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 67/290 (23%), Positives = 113/290 (38%), Gaps = 49/290 (16%)
Query: 155 GLLQNLAELRELYLDGVNISAPGIEWCQALSSLVPKLQVLSLSGCFLSGPVDPSLSNLRS 214
G + L L+L+ V + P + L ++ LSLS LS + + L+
Sbjct: 199 GCFHAIGRLFGLFLNNVQL-GPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKW 257
Query: 215 LSVIRLDM---------NDLYSPVPE---FLADFSNLTSLYLSSCGLHGAFPEKILQLPT 262
++ LD+ ND ++ +P+ F +++N+ L+ S LHG F + L L
Sbjct: 258 TNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLF--SHSLHGLFNVRYLNLKR 315
Query: 263 LETLDLSYNELLQGSLPD-----FHQNLSLETLILSATNFSGILPDSIKNLKNLSRVEFY 317
+ + SLP F LE L + + GI + L NL Y
Sbjct: 316 ----SFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLK----Y 367
Query: 318 LCNFNGPIPTSMSDLSQLVYLDMSFNHFSGPIPSLHMFRN---------------LAYLD 362
L N TS+ L+ ++ ++ P+ L++ +N L LD
Sbjct: 368 LSLSNSF--TSLRTLTNETFVSLA----HSPLHILNLTKNKISKIESDAFSWLGHLEVLD 421
Query: 363 LSYNIFTGGISSIGWEQLLNLFHVDLSHNNLGGSIPQSLFELPMVQHLLL 412
L N ++ W L N+F + LS+N S +P +Q L+L
Sbjct: 422 LGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLML 471
Score = 29.6 bits (65), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 44/98 (44%)
Query: 214 SLSVIRLDMNDLYSPVPEFLADFSNLTSLYLSSCGLHGAFPEKILQLPTLETLDLSYNEL 273
+++V+ L N L +S LTSL + + PE +LP L+ L+L +NEL
Sbjct: 36 NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL 95
Query: 274 LQGSLPDFHQNLSLETLILSATNFSGILPDSIKNLKNL 311
Q S F +L L L + + I + KNL
Sbjct: 96 SQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNL 133
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 46/208 (22%), Positives = 80/208 (38%), Gaps = 10/208 (4%)
Query: 633 NSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQXXXXXXXXXXXXXTVSAT 692
NS+ + NL+ LDLS+N LS + + + Q +
Sbjct: 112 NSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELD 171
Query: 693 FPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFP---CWVKNASRLHV 749
AN SL+ L+L+ NQ++ P L L L N Q + C + +
Sbjct: 172 IFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRN 231
Query: 750 LILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFS--GRLPQKWLLNLEAMMVDEGRSQS 807
L L ++ + + W L ++DL+ N + G WL LE ++ Q
Sbjct: 232 LSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQH 291
Query: 808 ELKH-----LQYRFLNLSQAYYQDAITV 830
H R+LNL +++ + +I++
Sbjct: 292 LFSHSLHGLFNVRYLNLKRSFTKQSISL 319
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 77/183 (42%), Gaps = 18/183 (9%)
Query: 207 PSLSNL--RSLSVIRLDMNDLYSPVPEFLADFSNLTSLYLSSCGLHGAFPEKILQLPTLE 264
PSL L R +++ +D SP P NLT L LS+ + + + L LE
Sbjct: 459 PSLQRLMLRRVALKNVDS----SPSP--FQPLRNLTILDLSNNNIANINDDMLEGLEKLE 512
Query: 265 TLDLSYNELLQ-------GSLPDFHQNLS-LETLILSATNFSGILPDSIKNLKNLSRVEF 316
LDL +N L + G F + LS L L L + F I + K+L L ++
Sbjct: 513 ILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDL 572
Query: 317 YLCNFNGPIPTSMSDLSQLVYLDMSFNHFSGPIPSLH--MFRNLAYLDLSYNIFTGGISS 374
L N N + ++ L L++ N + + FRNL LD+ +N F S
Sbjct: 573 GLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES 632
Query: 375 IGW 377
I W
Sbjct: 633 IAW 635
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 29/60 (48%)
Query: 869 SLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLNLSYNHL 928
++ LNL+HN L + ++ SLD+ N +S P L L VLNL +N L
Sbjct: 31 NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL 90
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 67/290 (23%), Positives = 113/290 (38%), Gaps = 49/290 (16%)
Query: 155 GLLQNLAELRELYLDGVNISAPGIEWCQALSSLVPKLQVLSLSGCFLSGPVDPSLSNLRS 214
G + L L+L+ V + P + L ++ LSLS LS + + L+
Sbjct: 194 GCFHAIGRLFGLFLNNVQL-GPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKW 252
Query: 215 LSVIRLDM---------NDLYSPVPE---FLADFSNLTSLYLSSCGLHGAFPEKILQLPT 262
++ LD+ ND ++ +P+ F +++N+ L+ S LHG F + L L
Sbjct: 253 TNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLF--SHSLHGLFNVRYLNLKR 310
Query: 263 LETLDLSYNELLQGSLPD-----FHQNLSLETLILSATNFSGILPDSIKNLKNLSRVEFY 317
+ + SLP F LE L + + GI + L NL Y
Sbjct: 311 ----SFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLK----Y 362
Query: 318 LCNFNGPIPTSMSDLSQLVYLDMSFNHFSGPIPSLHMFRN---------------LAYLD 362
L N TS+ L+ ++ ++ P+ L++ +N L LD
Sbjct: 363 LSLSNSF--TSLRTLTNETFVSLA----HSPLHILNLTKNKISKIESDAFSWLGHLEVLD 416
Query: 363 LSYNIFTGGISSIGWEQLLNLFHVDLSHNNLGGSIPQSLFELPMVQHLLL 412
L N ++ W L N+F + LS+N S +P +Q L+L
Sbjct: 417 LGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLML 466
Score = 29.6 bits (65), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 44/98 (44%)
Query: 214 SLSVIRLDMNDLYSPVPEFLADFSNLTSLYLSSCGLHGAFPEKILQLPTLETLDLSYNEL 273
+++V+ L N L +S LTSL + + PE +LP L+ L+L +NEL
Sbjct: 31 NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL 90
Query: 274 LQGSLPDFHQNLSLETLILSATNFSGILPDSIKNLKNL 311
Q S F +L L L + + I + KNL
Sbjct: 91 SQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNL 128
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 46/208 (22%), Positives = 80/208 (38%), Gaps = 10/208 (4%)
Query: 633 NSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQXXXXXXXXXXXXXTVSAT 692
NS+ + NL+ LDLS+N LS + + + Q +
Sbjct: 107 NSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELD 166
Query: 693 FPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFP---CWVKNASRLHV 749
AN SL+ L+L+ NQ++ P L L L N Q + C + +
Sbjct: 167 IFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRN 226
Query: 750 LILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFS--GRLPQKWLLNLEAMMVDEGRSQS 807
L L ++ + + W L ++DL+ N + G WL LE ++ Q
Sbjct: 227 LSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQH 286
Query: 808 ELKH-----LQYRFLNLSQAYYQDAITV 830
H R+LNL +++ + +I++
Sbjct: 287 LFSHSLHGLFNVRYLNLKRSFTKQSISL 314
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 77/183 (42%), Gaps = 18/183 (9%)
Query: 207 PSLSNL--RSLSVIRLDMNDLYSPVPEFLADFSNLTSLYLSSCGLHGAFPEKILQLPTLE 264
PSL L R +++ +D SP P NLT L LS+ + + + L LE
Sbjct: 454 PSLQRLMLRRVALKNVDS----SPSP--FQPLRNLTILDLSNNNIANINDDMLEGLEKLE 507
Query: 265 TLDLSYNELLQ-------GSLPDFHQNLS-LETLILSATNFSGILPDSIKNLKNLSRVEF 316
LDL +N L + G F + LS L L L + F I + K+L L ++
Sbjct: 508 ILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDL 567
Query: 317 YLCNFNGPIPTSMSDLSQLVYLDMSFNHFSGPIPSLH--MFRNLAYLDLSYNIFTGGISS 374
L N N + ++ L L++ N + + FRNL LD+ +N F S
Sbjct: 568 GLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES 627
Query: 375 IGW 377
I W
Sbjct: 628 IAW 630
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 29/60 (48%)
Query: 869 SLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLNLSYNHL 928
++ LNL+HN L + ++ SLD+ N +S P L L VLNL +N L
Sbjct: 26 NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL 85
Score = 30.8 bits (68), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 67/290 (23%), Positives = 113/290 (38%), Gaps = 49/290 (16%)
Query: 155 GLLQNLAELRELYLDGVNISAPGIEWCQALSSLVPKLQVLSLSGCFLSGPVDPSLSNLRS 214
G + L L+L+ V + P + L ++ LSLS LS + + L+
Sbjct: 189 GCFHAIGRLFGLFLNNVQL-GPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKW 247
Query: 215 LSVIRLDM---------NDLYSPVPE---FLADFSNLTSLYLSSCGLHGAFPEKILQLPT 262
++ LD+ ND ++ +P+ F +++N+ L+ S LHG F + L L
Sbjct: 248 TNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLF--SHSLHGLFNVRYLNLKR 305
Query: 263 LETLDLSYNELLQGSLPD-----FHQNLSLETLILSATNFSGILPDSIKNLKNLSRVEFY 317
+ + SLP F LE L + + GI + L NL Y
Sbjct: 306 ----SFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLK----Y 357
Query: 318 LCNFNGPIPTSMSDLSQLVYLDMSFNHFSGPIPSLHMFRN---------------LAYLD 362
L N TS+ L+ ++ ++ P+ L++ +N L LD
Sbjct: 358 LSLSNSF--TSLRTLTNETFVSLA----HSPLHILNLTKNKISKIESDAFSWLGHLEVLD 411
Query: 363 LSYNIFTGGISSIGWEQLLNLFHVDLSHNNLGGSIPQSLFELPMVQHLLL 412
L N ++ W L N+F + LS+N S +P +Q L+L
Sbjct: 412 LGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLML 461
Score = 29.6 bits (65), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 44/98 (44%)
Query: 214 SLSVIRLDMNDLYSPVPEFLADFSNLTSLYLSSCGLHGAFPEKILQLPTLETLDLSYNEL 273
+++V+ L N L +S LTSL + + PE +LP L+ L+L +NEL
Sbjct: 26 NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL 85
Query: 274 LQGSLPDFHQNLSLETLILSATNFSGILPDSIKNLKNL 311
Q S F +L L L + + I + KNL
Sbjct: 86 SQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNL 123
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 34.3 bits (77), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 467 VGTIELDAIQRLRNLFRLDLSYNRLAVVAGSSVYCFPPLLTTLSLASCKLSAIP 520
+ IEL+ + R L+RL L +N++ ++ S+ F P L L L + KLS +P
Sbjct: 205 IQAIELEDLLRYSKLYRLGLGHNQIRMIENGSL-SFLPTLRELHLDNNKLSRVP 257
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 33.9 bits (76), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 48/100 (48%), Gaps = 5/100 (5%)
Query: 188 VPKLQVLSLSGCFLSGPVDPSLSNLRSLSVIRLDMNDLYSPVPEFLADFSNLTSLYLSSC 247
VP L+ L LS L + S+L++L V+ L N + D + L LYLS
Sbjct: 87 VPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQN 146
Query: 248 GLHGAFPEKILQ----LPTLETLDLSYNELLQGSLPDFHQ 283
+ FP ++++ LP L LDLS N+L + L D +
Sbjct: 147 QI-SRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQK 185
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 60/229 (26%), Positives = 93/229 (40%), Gaps = 32/229 (13%)
Query: 639 IPESICNATNLLVLDLSYNYLSGM----IPTCLINMSDSQXXXXXXXXXXXXXTVSATFP 694
+P+S+ + T LL DLS+N LS + PT L N+ S F
Sbjct: 33 VPQSLPSYTALL--DLSHNNLSRLRAEWTPTRLTNLH-----SLLLSHNHLNFISSEAFV 85
Query: 695 ANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRS 754
+LR LDL+ N L + ++ LE+L L NN ++ ++L L L
Sbjct: 86 PVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQ 145
Query: 755 NNFFG-NISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVD-----------E 802
N + + P L ++DL+SNK +LP L L A + + +
Sbjct: 146 NQISRFPVELIKDGNKLPKLMLLDLSSNKLK-KLPLTDLQKLPAWVKNGLYLHNNPLECD 204
Query: 803 GRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDF 851
+ H QYR L+ + +D + K K+ NIF S+DF
Sbjct: 205 CKLYQLFSHWQYRQLSSVMDFQEDLYCMHSK-------KLHNIF-SLDF 245
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 33.9 bits (76), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 84/335 (25%), Positives = 126/335 (37%), Gaps = 98/335 (29%)
Query: 471 ELDAIQRLRNLFRLDLSYNRLAVVA-------------GSSVYCFPPL--LTTLS---LA 512
++D ++ L NL RL+LS N ++ ++ G+ V PL LTTL ++
Sbjct: 125 DIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDIS 184
Query: 513 SCKLSAIPNLRKQTKLYHLDLSDNQISGEIP--------------NWLWKIGKDSFXXXX 558
S K+S I L K T L L ++NQIS P N L IG
Sbjct: 185 SNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG-------- 236
Query: 559 XXXXXXXXXEQPYSISDLTSLSVLDLHSNQIQGKIPPLPPNAAYVDYS-GNNFTSSIPVD 617
+++ LT+L+ LDL +NQI + PL + G N S+I
Sbjct: 237 -------------TLASLTNLTDLDLANNQI-SNLAPLSGLTKLTELKLGANQISNISPL 282
Query: 618 IGXXXXXXXXXXXXKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQXXX 677
G +N L + P I N NL L L +N +S + P +
Sbjct: 283 AGLTALTNLELN--ENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSSL--------- 329
Query: 678 XXXXXXXXXXTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTF 737
L+ L N++ + SLAN + + L G+NQ D
Sbjct: 330 -------------------TKLQRLFFANNKVSDV--SSLANLTNINWLSAGHNQISDLT 368
Query: 738 PCWVKNASRLHVLILRSN-------NFFGNISCPR 765
P + N +R+ L L N+ N+S P
Sbjct: 369 P--LANLTRITQLGLNDQAWTNAPVNYKANVSIPN 401
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 66/247 (26%), Positives = 103/247 (41%), Gaps = 58/247 (23%)
Query: 704 LNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNF------ 757
+N NQ+ + P LAN + L L L NNQ D P +KN + L+ L L SN
Sbjct: 96 MNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISAL 151
Query: 758 ----------FGN-ISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQ 806
FGN ++ + + L+ +D++SNK S L NLE+++ +
Sbjct: 152 SGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQI- 210
Query: 807 SELKHLQYRFLNLSQAYYQDAITVTIKGLEMK----LAKILNIFTSIDFSRNNFEGPIP- 861
S++ L NL + +++ G ++K LA + N+ T +D + N P
Sbjct: 211 SDITPLGI-LTNLDE--------LSLNGNQLKDIGTLASLTNL-TDLDLANNQISNLAPL 260
Query: 862 ------EEMGL-------------LQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMN 902
E+ L L +L L L+ N L P I NL+ + L L N
Sbjct: 261 SGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFN 318
Query: 903 NLSGTIP 909
N+S P
Sbjct: 319 NISDISP 325
Score = 31.6 bits (70), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 73/163 (44%), Gaps = 15/163 (9%)
Query: 205 VDPSLSNLRSLSVIRLDMNDLYSPVPEFLADFSNLTSLYLSSCGLHGAFPEKILQLPTLE 264
+DP L NL +L+ + L N + ++ S LTSL S G + + L TLE
Sbjct: 126 IDP-LKNLTNLNRLELSSNTISD-----ISALSGLTSLQQLSFGNQVTDLKPLANLTTLE 179
Query: 265 TLDLSYNELLQGSLPDFHQNLSLETLILSATNFSGILPDSI-KNLKNLSRVEFYLCNFNG 323
LD+S N++ S+ + +LE+LI + S I P I NL LS L +
Sbjct: 180 RLDISSNKVSDISV--LAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG- 236
Query: 324 PIPTSMSDLSQLVYLDMSFNHFSGPIPSLHMFRNLAYLDLSYN 366
+++ L+ L LD++ N S P L L L L N
Sbjct: 237 ----TLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGAN 274
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 33.5 bits (75), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 69/244 (28%), Positives = 108/244 (44%), Gaps = 66/244 (27%)
Query: 182 QALSSLVPKLQVLSLSGCFLSGPVDPSLSNLRSLSVIRLDMNDLYS-----PVPEFLADF 236
+ALS L P L+ L +S L P L N L +I +D N L P EF+A
Sbjct: 124 KALSDLPPLLEYLGVSNNQLEK--LPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAG 181
Query: 237 SN-------------LTSLYLSSCGLHGAFPEKILQLP-TLETLDLSYNELLQGSLPDFH 282
+N LT++Y + L +K+ LP +LE++ ++ N +L+ LP+
Sbjct: 182 NNQLEELPELQNLPFLTAIYADNNSL-----KKLPDLPLSLESI-VAGNNILE-ELPEL- 233
Query: 283 QNLSLETLILSATNFSGILPDSIKNLKNLSRVEFYLCNFNGPIPTSMSDLSQLVYLDMSF 342
QNL T I + N LPD +L+ L+ + YL T + +L Q
Sbjct: 234 QNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYL--------TDLPELPQ-------- 277
Query: 343 NHFSGPIPSLHMFRNLAYLDLSYNIFTGGISSIGWEQLLNLFHVDLSHNNLGG--SIPQS 400
+L +LD+S NIF+ G+S + NL++++ S N + +P S
Sbjct: 278 --------------SLTFLDVSENIFS-GLSELPP----NLYYLNASSNEIRSLCDLPPS 318
Query: 401 LFEL 404
L EL
Sbjct: 319 LEEL 322
Score = 29.6 bits (65), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 67/143 (46%), Gaps = 15/143 (10%)
Query: 474 AIQRLRNLFRLDLSYNRLAVVAGSSVYCFPPLLTTLSLASCK-LSAIPNLRKQTKLYHLD 532
A+ RLR+ L + SS+ PP L +L +ASC L+ +P L + K +D
Sbjct: 61 AVSRLRDCLDRQAHELELNNLGLSSLPELPPHLESL-VASCNSLTELPELPQSLKSLLVD 119
Query: 533 LSDNQISGEIPNWLWKIGKDSFXXXXXXXXXXXXXEQPYSISDLTSLSVLDLHSNQIQGK 592
++ + ++P L +G E+ + + + L ++D+ +N ++ K
Sbjct: 120 NNNLKALSDLPPLLEYLG-----------VSNNQLEKLPELQNSSFLKIIDVDNNSLK-K 167
Query: 593 IPPLPPNAAYVDYSGNNFTSSIP 615
+P LPP+ ++ +GNN +P
Sbjct: 168 LPDLPPSLEFI-AAGNNQLEELP 189
>pdb|3HAM|A Chain A, Structure Of The Gentamicin-Aph(2")-Iia Complex
pdb|3HAM|B Chain B, Structure Of The Gentamicin-Aph(2")-Iia Complex
pdb|3HAV|A Chain A, Structure Of The Streptomycin-Atp-Aph(2")-Iia Ternary
Complex
pdb|3HAV|B Chain B, Structure Of The Streptomycin-Atp-Aph(2")-Iia Ternary
Complex
pdb|3HAV|C Chain C, Structure Of The Streptomycin-Atp-Aph(2")-Iia Ternary
Complex
Length = 299
Score = 33.5 bits (75), Expect = 0.60, Method: Composition-based stats.
Identities = 26/112 (23%), Positives = 47/112 (41%), Gaps = 3/112 (2%)
Query: 738 PCWVKNASRLHVLILRSNNFFGNISCPRYNVSWP---MLQIIDLASNKFSGRLPQKWLLN 794
PC V N + +I R+N FG I +NV P L ++D +++ F +K L
Sbjct: 186 PCLVHNDFSANNMIFRNNRLFGVIDFGDFNVGDPDNDFLCLLDCSTDDFGKEFGRKVLKY 245
Query: 795 LEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIF 846
+ + ++EL + + + Y + + IKG+ L +F
Sbjct: 246 YQHKAPEVAERKAELNDVYWSIDQIIYGYERKDREMLIKGVSELLQTQAEMF 297
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 33.5 bits (75), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 84/335 (25%), Positives = 126/335 (37%), Gaps = 98/335 (29%)
Query: 471 ELDAIQRLRNLFRLDLSYNRLAVVA-------------GSSVYCFPPL--LTTLS---LA 512
++D ++ L NL RL+LS N ++ ++ G+ V PL LTTL ++
Sbjct: 126 DIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDIS 185
Query: 513 SCKLSAIPNLRKQTKLYHLDLSDNQISGEIP--------------NWLWKIGKDSFXXXX 558
S K+S I L K T L L ++NQIS P N L IG
Sbjct: 186 SNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG-------- 237
Query: 559 XXXXXXXXXEQPYSISDLTSLSVLDLHSNQIQGKIPPLPPNAAYVDYS-GNNFTSSIPVD 617
+++ LT+L+ LDL +NQI + PL + G N S+I
Sbjct: 238 -------------TLASLTNLTDLDLANNQI-SNLAPLSGLTKLTELKLGANQISNISPL 283
Query: 618 IGXXXXXXXXXXXXKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQXXX 677
G +N L + P I N NL L L +N +S + P +
Sbjct: 284 AGLTALTNLELN--ENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSSL--------- 330
Query: 678 XXXXXXXXXXTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTF 737
L+ L N++ + SLAN + + L G+NQ D
Sbjct: 331 -------------------TKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLT 369
Query: 738 PCWVKNASRLHVLILRSN-------NFFGNISCPR 765
P + N +R+ L L N+ N+S P
Sbjct: 370 P--LANLTRITQLGLNDQAWTNAPVNYKANVSIPN 402
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 66/247 (26%), Positives = 103/247 (41%), Gaps = 58/247 (23%)
Query: 704 LNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNF------ 757
+N NQ+ + P LAN + L L L NNQ D P +KN + L+ L L SN
Sbjct: 97 MNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISAL 152
Query: 758 ----------FGN-ISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQ 806
FGN ++ + + L+ +D++SNK S L NLE+++ +
Sbjct: 153 SGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQI- 211
Query: 807 SELKHLQYRFLNLSQAYYQDAITVTIKGLEMK----LAKILNIFTSIDFSRNNFEGPIP- 861
S++ L NL + +++ G ++K LA + N+ T +D + N P
Sbjct: 212 SDITPLGI-LTNLDE--------LSLNGNQLKDIGTLASLTNL-TDLDLANNQISNLAPL 261
Query: 862 ------EEMGL-------------LQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMN 902
E+ L L +L L L+ N L P I NL+ + L L N
Sbjct: 262 SGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFN 319
Query: 903 NLSGTIP 909
N+S P
Sbjct: 320 NISDISP 326
Score = 31.2 bits (69), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 73/163 (44%), Gaps = 15/163 (9%)
Query: 205 VDPSLSNLRSLSVIRLDMNDLYSPVPEFLADFSNLTSLYLSSCGLHGAFPEKILQLPTLE 264
+DP L NL +L+ + L N + ++ S LTSL S G + + L TLE
Sbjct: 127 IDP-LKNLTNLNRLELSSNTISD-----ISALSGLTSLQQLSFGNQVTDLKPLANLTTLE 180
Query: 265 TLDLSYNELLQGSLPDFHQNLSLETLILSATNFSGILPDSI-KNLKNLSRVEFYLCNFNG 323
LD+S N++ S+ + +LE+LI + S I P I NL LS L +
Sbjct: 181 RLDISSNKVSDISV--LAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG- 237
Query: 324 PIPTSMSDLSQLVYLDMSFNHFSGPIPSLHMFRNLAYLDLSYN 366
+++ L+ L LD++ N S P L L L L N
Sbjct: 238 ----TLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGAN 275
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 77/161 (47%), Gaps = 12/161 (7%)
Query: 263 LETLDLSYNELLQGSLPDFHQNLSLETLILSATNFSGILPDSIKNLKNLSRVEF---YLC 319
+++LDLS N + S D + ++L+ L+L++ + I DS +L +L ++ YL
Sbjct: 54 VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 113
Query: 320 NFNGPIPTSMSDLSQLVYLDMSFNHFSGPIPSLHMFRNLAYLDL----SYNIFTGGISSI 375
N + + LS L +L++ N + + +F +L L + + + FT I
Sbjct: 114 NLSS---SWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFT-KIQRK 168
Query: 376 GWEQLLNLFHVDLSHNNLGGSIPQSLFELPMVQHLLLADNQ 416
+ L L +++ ++L P+SL + V HL+L Q
Sbjct: 169 DFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQ 209
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 77/161 (47%), Gaps = 12/161 (7%)
Query: 263 LETLDLSYNELLQGSLPDFHQNLSLETLILSATNFSGILPDSIKNLKNLSRVEF---YLC 319
+++LDLS N + S D + ++L+ L+L++ + I DS +L +L ++ YL
Sbjct: 28 VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 87
Query: 320 NFNGPIPTSMSDLSQLVYLDMSFNHFSGPIPSLHMFRNLAYLDL----SYNIFTGGISSI 375
N + + LS L +L++ N + + +F +L L + + + FT I
Sbjct: 88 NLSS---SWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFT-KIQRK 142
Query: 376 GWEQLLNLFHVDLSHNNLGGSIPQSLFELPMVQHLLLADNQ 416
+ L L +++ ++L P+SL + V HL+L Q
Sbjct: 143 DFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQ 183
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 49/109 (44%), Gaps = 16/109 (14%)
Query: 121 IPIQVSGMTRLVTLDLSGMYFVRAPLKLENPNLSGLLQNLAELRELYLDGVNISA--PGI 178
+P+ + L LD+S PL G L+ L EL+ELYL G + PG
Sbjct: 92 LPLLGQTLPALTVLDVSFNRLTSLPL--------GALRGLGELQELYLKGNELKTLPPG- 142
Query: 179 EWCQALSSLVPKLQVLSLSGCFLSGPVDPSLSNLRSLSVIRLDMNDLYS 227
L + PKL+ LSL+ L+ L+ L +L + L N LY+
Sbjct: 143 -----LLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT 186
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 49/109 (44%), Gaps = 16/109 (14%)
Query: 121 IPIQVSGMTRLVTLDLSGMYFVRAPLKLENPNLSGLLQNLAELRELYLDGVNISA--PGI 178
+P+ + L LD+S PL G L+ L EL+ELYL G + PG
Sbjct: 92 LPLLGQTLPALTVLDVSFNRLTSLPL--------GALRGLGELQELYLKGNELKTLPPG- 142
Query: 179 EWCQALSSLVPKLQVLSLSGCFLSGPVDPSLSNLRSLSVIRLDMNDLYS 227
L + PKL+ LSL+ L+ L+ L +L + L N LY+
Sbjct: 143 -----LLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYT 186
Score = 30.4 bits (67), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 29/61 (47%)
Query: 698 SLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNF 757
L+ L L GN+L+ + P L LE L L NNQ + + L L+L+ N+
Sbjct: 125 ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSL 184
Query: 758 F 758
+
Sbjct: 185 Y 185
Score = 29.6 bits (65), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 51/107 (47%), Gaps = 7/107 (6%)
Query: 213 RSLSVIRLDMNDLYSPVPEFLADFSNLTSLYLSSCGLHGAFPEKILQLPTLETLDLSYNE 272
+ +++ L N LY+ L ++ LT L L C L + L P L TLDLS+N+
Sbjct: 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTL--PVLGTLDLSHNQ 88
Query: 273 LLQGSLPDFHQNL-SLETLILSATNFSGILPDSIKNLKNLSRVEFYL 318
L SLP Q L +L L +S + + +++ L L E YL
Sbjct: 89 L--QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQ--ELYL 131
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 49/109 (44%), Gaps = 16/109 (14%)
Query: 121 IPIQVSGMTRLVTLDLSGMYFVRAPLKLENPNLSGLLQNLAELRELYLDGVNISA--PGI 178
+P+ + L LD+S PL G L+ L EL+ELYL G + PG
Sbjct: 92 LPLLGQTLPALTVLDVSFNRLTSLPL--------GALRGLGELQELYLKGNELKTLPPG- 142
Query: 179 EWCQALSSLVPKLQVLSLSGCFLSGPVDPSLSNLRSLSVIRLDMNDLYS 227
L + PKL+ LSL+ L+ L+ L +L + L N LY+
Sbjct: 143 -----LLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT 186
Score = 30.0 bits (66), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 51/107 (47%), Gaps = 7/107 (6%)
Query: 213 RSLSVIRLDMNDLYSPVPEFLADFSNLTSLYLSSCGLHGAFPEKILQLPTLETLDLSYNE 272
+ +++ L N LY+ L ++ LT L L C L + L P L TLDLS+N+
Sbjct: 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTL--PVLGTLDLSHNQ 88
Query: 273 LLQGSLPDFHQNL-SLETLILSATNFSGILPDSIKNLKNLSRVEFYL 318
L SLP Q L +L L +S + + +++ L L E YL
Sbjct: 89 L--QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQ--ELYL 131
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 49/109 (44%), Gaps = 16/109 (14%)
Query: 121 IPIQVSGMTRLVTLDLSGMYFVRAPLKLENPNLSGLLQNLAELRELYLDGVNISA--PGI 178
+P+ + L LD+S PL G L+ L EL+ELYL G + PG
Sbjct: 92 LPLLGQTLPALTVLDVSFNRLTSLPL--------GALRGLGELQELYLKGNELKTLPPG- 142
Query: 179 EWCQALSSLVPKLQVLSLSGCFLSGPVDPSLSNLRSLSVIRLDMNDLYS 227
L + PKL+ LSL+ L+ L+ L +L + L N LY+
Sbjct: 143 -----LLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT 186
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 49/109 (44%), Gaps = 16/109 (14%)
Query: 121 IPIQVSGMTRLVTLDLSGMYFVRAPLKLENPNLSGLLQNLAELRELYLDGVNISA--PGI 178
+P+ + L LD+S PL G L+ L EL+ELYL G + PG
Sbjct: 92 LPLLGQTLPALTVLDVSFNRLTSLPL--------GALRGLGELQELYLKGNELKTLPPG- 142
Query: 179 EWCQALSSLVPKLQVLSLSGCFLSGPVDPSLSNLRSLSVIRLDMNDLYS 227
L + PKL+ LSL+ L+ L+ L +L + L N LY+
Sbjct: 143 -----LLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT 186
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 47/91 (51%), Gaps = 5/91 (5%)
Query: 328 SMSDLSQLVYLDMSFNHFSGPIPSLHMFRNLAYLDLSYNIFTGGISSIGWEQLLNLFHVD 387
+++L +LV ++ P NL YL+L++N + +++L NL +D
Sbjct: 107 KLTNLKELVLVENQLQSL--PDGVFDKLTNLTYLNLAHNQLQSLPKGV-FDKLTNLTELD 163
Query: 388 LSHNNLGGSIPQSLFE-LPMVQHLLLADNQF 417
LS+N L S+P+ +F+ L ++ L L NQ
Sbjct: 164 LSYNQL-QSLPEGVFDKLTQLKDLRLYQNQL 193
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 49/109 (44%), Gaps = 16/109 (14%)
Query: 121 IPIQVSGMTRLVTLDLSGMYFVRAPLKLENPNLSGLLQNLAELRELYLDGVNISA--PGI 178
+P+ + L LD+S PL G L+ L EL+ELYL G + PG
Sbjct: 93 LPLLGQTLPALTVLDVSFNRLTSLPL--------GALRGLGELQELYLKGNELKTLPPG- 143
Query: 179 EWCQALSSLVPKLQVLSLSGCFLSGPVDPSLSNLRSLSVIRLDMNDLYS 227
L + PKL+ LSL+ L+ L+ L +L + L N LY+
Sbjct: 144 -----LLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT 187
Score = 29.6 bits (65), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 51/107 (47%), Gaps = 7/107 (6%)
Query: 213 RSLSVIRLDMNDLYSPVPEFLADFSNLTSLYLSSCGLHGAFPEKILQLPTLETLDLSYNE 272
+ +++ L N LY+ L ++ LT L L C L + L P L TLDLS+N+
Sbjct: 32 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTL--PVLGTLDLSHNQ 89
Query: 273 LLQGSLPDFHQNL-SLETLILSATNFSGILPDSIKNLKNLSRVEFYL 318
L SLP Q L +L L +S + + +++ L L E YL
Sbjct: 90 L--QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQ--ELYL 132
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 49/109 (44%), Gaps = 16/109 (14%)
Query: 121 IPIQVSGMTRLVTLDLSGMYFVRAPLKLENPNLSGLLQNLAELRELYLDGVNISA--PGI 178
+P+ + L LD+S PL G L+ L EL+ELYL G + PG
Sbjct: 92 LPLLGQTLPALTVLDVSFNRLTSLPL--------GALRGLGELQELYLKGNELKTLPPG- 142
Query: 179 EWCQALSSLVPKLQVLSLSGCFLSGPVDPSLSNLRSLSVIRLDMNDLYS 227
L + PKL+ LSL+ L+ L+ L +L + L N LY+
Sbjct: 143 -----LLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYT 186
Score = 30.0 bits (66), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 29/61 (47%)
Query: 698 SLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNF 757
L+ L L GN+L+ + P L LE L L NNQ + + L L+L+ N+
Sbjct: 125 ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSL 184
Query: 758 F 758
+
Sbjct: 185 Y 185
Score = 30.0 bits (66), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 51/107 (47%), Gaps = 7/107 (6%)
Query: 213 RSLSVIRLDMNDLYSPVPEFLADFSNLTSLYLSSCGLHGAFPEKILQLPTLETLDLSYNE 272
+ +++ L N LY+ L ++ LT L L C L + L P L TLDLS+N+
Sbjct: 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTL--PVLGTLDLSHNQ 88
Query: 273 LLQGSLPDFHQNL-SLETLILSATNFSGILPDSIKNLKNLSRVEFYL 318
L SLP Q L +L L +S + + +++ L L E YL
Sbjct: 89 L--QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQ--ELYL 131
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 49/109 (44%), Gaps = 16/109 (14%)
Query: 121 IPIQVSGMTRLVTLDLSGMYFVRAPLKLENPNLSGLLQNLAELRELYLDGVNISA--PGI 178
+P+ + L LD+S PL G L+ L EL+ELYL G + PG
Sbjct: 92 LPLLGQTLPALTVLDVSFNRLTSLPL--------GALRGLGELQELYLKGNELKTLPPG- 142
Query: 179 EWCQALSSLVPKLQVLSLSGCFLSGPVDPSLSNLRSLSVIRLDMNDLYS 227
L + PKL+ LSL+ L+ L+ L +L + L N LY+
Sbjct: 143 -----LLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYT 186
Score = 30.0 bits (66), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 29/61 (47%)
Query: 698 SLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNF 757
L+ L L GN+L+ + P L LE L L NNQ + + L L+L+ N+
Sbjct: 125 ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSL 184
Query: 758 F 758
+
Sbjct: 185 Y 185
Score = 29.6 bits (65), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 51/107 (47%), Gaps = 7/107 (6%)
Query: 213 RSLSVIRLDMNDLYSPVPEFLADFSNLTSLYLSSCGLHGAFPEKILQLPTLETLDLSYNE 272
+ +++ L N LY+ L ++ LT L L C L + L P L TLDLS+N+
Sbjct: 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTL--PVLGTLDLSHNQ 88
Query: 273 LLQGSLPDFHQNL-SLETLILSATNFSGILPDSIKNLKNLSRVEFYL 318
L SLP Q L +L L +S + + +++ L L E YL
Sbjct: 89 L--QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQ--ELYL 131
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 49/109 (44%), Gaps = 16/109 (14%)
Query: 121 IPIQVSGMTRLVTLDLSGMYFVRAPLKLENPNLSGLLQNLAELRELYLDGVNISA--PGI 178
+P+ + L LD+S PL G L+ L EL+ELYL G + PG
Sbjct: 92 LPLLGQTLPALTVLDVSFNRLTSLPL--------GALRGLGELQELYLKGNELKTLPPG- 142
Query: 179 EWCQALSSLVPKLQVLSLSGCFLSGPVDPSLSNLRSLSVIRLDMNDLYS 227
L + PKL+ LSL+ L+ L+ L +L + L N LY+
Sbjct: 143 -----LLTPTPKLEKLSLANNDLTELPAGLLNGLENLDTLLLQENSLYT 186
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 49/109 (44%), Gaps = 16/109 (14%)
Query: 121 IPIQVSGMTRLVTLDLSGMYFVRAPLKLENPNLSGLLQNLAELRELYLDGVNISA--PGI 178
+P+ + L LD+S PL G L+ L EL+ELYL G + PG
Sbjct: 92 LPLLGQTLPALTVLDVSFNRLTSLPL--------GALRGLGELQELYLKGNELKTLPPG- 142
Query: 179 EWCQALSSLVPKLQVLSLSGCFLSGPVDPSLSNLRSLSVIRLDMNDLYS 227
L + PKL+ LSL+ L+ L+ L +L + L N LY+
Sbjct: 143 -----LLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYT 186
Score = 30.4 bits (67), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 29/61 (47%)
Query: 698 SLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNF 757
L+ L L GN+L+ + P L LE L L NNQ + + L L+L+ N+
Sbjct: 125 ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSL 184
Query: 758 F 758
+
Sbjct: 185 Y 185
Score = 30.0 bits (66), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 51/107 (47%), Gaps = 7/107 (6%)
Query: 213 RSLSVIRLDMNDLYSPVPEFLADFSNLTSLYLSSCGLHGAFPEKILQLPTLETLDLSYNE 272
+ +++ L N LY+ L ++ LT L L C L + L P L TLDLS+N+
Sbjct: 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTL--PVLGTLDLSHNQ 88
Query: 273 LLQGSLPDFHQNL-SLETLILSATNFSGILPDSIKNLKNLSRVEFYL 318
L SLP Q L +L L +S + + +++ L L E YL
Sbjct: 89 L--QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQ--ELYL 131
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 84/336 (25%), Positives = 126/336 (37%), Gaps = 99/336 (29%)
Query: 471 ELDAIQRLRNLFRLDLSYNRLAVVAGSS--------------VYCFPPL--LTTLS---L 511
++D ++ L NL RL+LS N ++ ++ S V PL LTTL +
Sbjct: 121 DIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFSSNQVTDLKPLANLTTLERLDI 180
Query: 512 ASCKLSAIPNLRKQTKLYHLDLSDNQISGEIP--------------NWLWKIGKDSFXXX 557
+S K+S I L K T L L ++NQIS P N L IG
Sbjct: 181 SSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG------- 233
Query: 558 XXXXXXXXXXEQPYSISDLTSLSVLDLHSNQIQGKIPPLPPNAAYVDYS-GNNFTSSIPV 616
+++ LT+L+ LDL +NQI + PL + G N S+I
Sbjct: 234 --------------TLASLTNLTDLDLANNQI-SNLAPLSGLTKLTELKLGANQISNISP 278
Query: 617 DIGXXXXXXXXXXXXKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQXX 676
G +N L + P I N NL L L +N +S + P +
Sbjct: 279 LAGLTALTNLELN--ENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSSL-------- 326
Query: 677 XXXXXXXXXXXTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDT 736
L+ L + N++ + SLAN + + L G+NQ D
Sbjct: 327 --------------------TKLQRLFFSNNKVSDV--SSLANLTNINWLSAGHNQISDL 364
Query: 737 FPCWVKNASRLHVLILRSN-------NFFGNISCPR 765
P + N +R+ L L N+ N+S P
Sbjct: 365 TP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPN 398
Score = 29.6 bits (65), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 67/251 (26%), Positives = 103/251 (41%), Gaps = 65/251 (25%)
Query: 704 LNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISC 763
+N NQ+ + P LAN + L L L NNQ D P +KN + L+ L L SN +IS
Sbjct: 92 MNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSN-TISDISA 146
Query: 764 ---------------------PRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDE 802
P N++ L+ +D++SNK S L NLE+++
Sbjct: 147 LSGLTSLQQLSFSSNQVTDLKPLANLT--TLERLDISSNKVSDISVLAKLTNLESLIATN 204
Query: 803 GRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMK----LAKILNIFTSIDFSRNNFEG 858
+ S++ L NL + +++ G ++K LA + N+ T +D + N
Sbjct: 205 NQI-SDITPLGI-LTNLDE--------LSLNGNQLKDIGTLASLTNL-TDLDLANNQISN 253
Query: 859 PIP-------EEMGL-------------LQSLCALNLSHNALTGSIPSLIGNLREIESLD 898
P E+ L L +L L L+ N L P I NL+ + L
Sbjct: 254 LAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLT 311
Query: 899 LSMNNLSGTIP 909
L NN+S P
Sbjct: 312 LYFNNISDISP 322
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 62/134 (46%), Gaps = 22/134 (16%)
Query: 814 YRFLNLSQAYYQDAI---TVTIKGLE------------MKLA---KILNIFTSIDFSRNN 855
+ FLN +Q + D++ T+K L+ K+A K ++ ++D S N+
Sbjct: 355 FTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNS 414
Query: 856 FEGPIPEEM-GLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLAS 914
+ +S+ LNLS N LTGS+ + +++ LDL NN +IP +
Sbjct: 415 LNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLH-NNRIMSIPKDVTH 471
Query: 915 LNFLSVLNLSYNHL 928
L L LN++ N L
Sbjct: 472 LQALQELNVASNQL 485
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 83/333 (24%), Positives = 125/333 (37%), Gaps = 52/333 (15%)
Query: 633 NSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQXXXXXXXXXXXXXTVSAT 692
N + + E+ NL VL+LSYN L + + + + T
Sbjct: 300 NKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLP--KVAYIDLQKNHIAIIQDQT 357
Query: 693 FPANCSLRTLDLNGNQLEGM--VPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVL 750
F L+TLDL N L + +P S+ +I GN T P A+ +H+
Sbjct: 358 FKFLEKLQTLDLRDNALTTIHFIP------SIPDIFLSGNKLV--TLPKINLTANLIHL- 408
Query: 751 ILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELK 810
S N N+ + + P LQI+ L N+FS ++ SE
Sbjct: 409 ---SENRLENLDILYFLLRVPHLQILILNQNRFSS--------------CSGDQTPSENP 451
Query: 811 HLQYRFLN---LSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLL 867
L+ FL L A+ + +GL LN N P L
Sbjct: 452 SLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLN--------HNYLNSLPPGVFSHL 503
Query: 868 QSLCALNLSHNALTG-SIPSLIGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLNLSYN 926
+L L+L+ N LT S L NL E LD+S N L P S LSVL++++N
Sbjct: 504 TALRGLSLNSNRLTVLSHNDLPANL---EILDISRNQLLAPNPDVFVS---LSVLDITHN 557
Query: 927 HLVGRIPTSTQLQSFLATSFEGNDRLWGPPLNV 959
+ +L +F+ N + GPP ++
Sbjct: 558 KFI----CECELSTFINWLNHTNVTIAGPPADI 586
Score = 30.4 bits (67), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 869 SLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLNLSYNHL 928
S+ L+LSH + + L++++ L+L+ N ++ L+ L VLNLSYN L
Sbjct: 267 SVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYN-L 325
Query: 929 VGRIPTS 935
+G + +S
Sbjct: 326 LGELYSS 332
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 49/117 (41%), Gaps = 14/117 (11%)
Query: 257 ILQLPTLETLDLSYNELLQGSLPDFHQNLSLETLILSATNFSGILPDSIKNLKNLSRVEF 316
IL L L L +S+N + + F N LE L LS I NLK+L
Sbjct: 41 ILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCHPTVNLKHLD---- 96
Query: 317 YLCNFNG----PIPTSMSDLSQLVYLDMSFNHFSG----PIPSLHMFRNLAYLDLSY 365
+FN PI ++SQL +L +S H PI L++ + L L +Y
Sbjct: 97 --LSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETY 151
Score = 31.2 bits (69), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 77/297 (25%), Positives = 119/297 (40%), Gaps = 43/297 (14%)
Query: 130 RLVTLDLSGMYFVRAPLKLE-NPNLSGL-LQNLAELRELYLDGVNISAPGIEWCQALSSL 187
+ V D YF+ KL+ NP LS L L N+ ++ + + W ++S++
Sbjct: 198 KCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNV 257
Query: 188 VPKLQVLSLSGCFLSGPVDPSLSNLRSLSVIRLDMNDLYSPVPEFLADFSNLTSLYLSSC 247
L G D S ++L++LS+ ++ + P FSN+ +
Sbjct: 258 -------KLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVS 310
Query: 248 G---LHGAFPEKILQLPTLETLDLSYNELLQGSLPDFHQNLSLETLILSATNFSGILPDS 304
G +H P KI P L LD S N L + LETLIL
Sbjct: 311 GTRMVHMLCPSKIS--PFLH-LDFSNNLLTDTVFENCGHLTELETLILQ----------- 356
Query: 305 IKNLKNLSRVEFYLCNFNGPIPTSMSDLSQLVYLDMSFNH--FSGPIPSLHMFRNLAYLD 362
+ LK LS++ + T M L QL D+S N + ++L L+
Sbjct: 357 MNQLKELSKI--------AEMTTQMKSLQQL---DISQNSVSYDEKKGDCSWTKSLLSLN 405
Query: 363 LSYNIFTGGISSIGWEQLLNLFHVDLSHNNLGGSIPQSLFELPMVQHLLLADNQFDG 419
+S NI T I ++ L DL H+N SIP+ + +L +Q L +A NQ
Sbjct: 406 MSSNILTDTIFRCLPPRIKVL---DL-HSNKIKSIPKQVVKLEALQELNVASNQLKS 458
Score = 30.4 bits (67), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Query: 868 QSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLNLSYNH 927
+SL +LN+S N LT +I + I+ LDL N + +IP Q+ L L LN++ N
Sbjct: 399 KSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQ 455
Query: 928 L 928
L
Sbjct: 456 L 456
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 31.2 bits (69), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 24/46 (52%)
Query: 324 PIPTSMSDLSQLVYLDMSFNHFSGPIPSLHMFRNLAYLDLSYNIFT 369
P+ TS+ +L L+ +N G +P+ LA L+L+YN T
Sbjct: 321 PVETSLQKXKKLGXLECLYNQLEGKLPAFGSEIKLASLNLAYNQIT 366
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 30.8 bits (68), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 24/40 (60%)
Query: 504 PLLTTLSLASCKLSAIPNLRKQTKLYHLDLSDNQISGEIP 543
P L +L L + K++ I L + TKL L L DNQIS +P
Sbjct: 134 PQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP 173
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 30.8 bits (68), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 68/250 (27%), Positives = 103/250 (41%), Gaps = 63/250 (25%)
Query: 704 LNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSN-------- 755
+N NQ+ + P LAN + L L L NNQ D P +KN + L+ L L SN
Sbjct: 92 MNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISAL 147
Query: 756 ---------NFFGNISC---PRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEG 803
NF N P N++ L+ +D++SNK S L NLE+++
Sbjct: 148 SGLTSLQQLNFSSNQVTDLKPLANLT--TLERLDISSNKVSDISVLAKLTNLESLIATNN 205
Query: 804 RSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMK----LAKILNIFTSIDFSRNNFEGP 859
+ S++ L NL + +++ G ++K LA + N+ T +D + N
Sbjct: 206 QI-SDITPLGI-LTNLDE--------LSLNGNQLKDIGTLASLTNL-TDLDLANNQISNL 254
Query: 860 IP-------EEMGL-------------LQSLCALNLSHNALTGSIPSLIGNLREIESLDL 899
P E+ L L +L L L+ N L P I NL+ + L L
Sbjct: 255 APLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTL 312
Query: 900 SMNNLSGTIP 909
NN+S P
Sbjct: 313 YFNNISDISP 322
Score = 30.8 bits (68), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 84/336 (25%), Positives = 125/336 (37%), Gaps = 99/336 (29%)
Query: 471 ELDAIQRLRNLFRLDLSYNRLAVVAGSS--------------VYCFPPL--LTTLS---L 511
++D ++ L NL RL+LS N ++ ++ S V PL LTTL +
Sbjct: 121 DIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDI 180
Query: 512 ASCKLSAIPNLRKQTKLYHLDLSDNQISGEIP--------------NWLWKIGKDSFXXX 557
+S K+S I L K T L L ++NQIS P N L IG
Sbjct: 181 SSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG------- 233
Query: 558 XXXXXXXXXXEQPYSISDLTSLSVLDLHSNQIQGKIPPLPPNAAYVDYS-GNNFTSSIPV 616
+++ LT+L+ LDL +NQI + PL + G N S+I
Sbjct: 234 --------------TLASLTNLTDLDLANNQI-SNLAPLSGLTKLTELKLGANQISNISP 278
Query: 617 DIGXXXXXXXXXXXXKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQXX 676
G +N L + P I N NL L L +N +S + P +
Sbjct: 279 LAGLTALTNLELN--ENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSSL-------- 326
Query: 677 XXXXXXXXXXXTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDT 736
L+ L N++ + SLAN + + L G+NQ D
Sbjct: 327 --------------------TKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDL 364
Query: 737 FPCWVKNASRLHVLILRSN-------NFFGNISCPR 765
P + N +R+ L L N+ N+S P
Sbjct: 365 TP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPN 398
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 30.8 bits (68), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 84/336 (25%), Positives = 125/336 (37%), Gaps = 99/336 (29%)
Query: 471 ELDAIQRLRNLFRLDLSYNRLAVVAGSS--------------VYCFPPL--LTTLS---L 511
++D ++ L NL RL+LS N ++ ++ S V PL LTTL +
Sbjct: 121 DIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFSSNQVTDLKPLANLTTLERLDI 180
Query: 512 ASCKLSAIPNLRKQTKLYHLDLSDNQISGEIP--------------NWLWKIGKDSFXXX 557
+S K+S I L K T L L ++NQIS P N L IG
Sbjct: 181 SSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG------- 233
Query: 558 XXXXXXXXXXEQPYSISDLTSLSVLDLHSNQIQGKIPPLPPNAAYVDYS-GNNFTSSIPV 616
+++ LT+L+ LDL +NQI + PL + G N S+I
Sbjct: 234 --------------TLASLTNLTDLDLANNQI-SNLAPLSGLTKLTELKLGANQISNISP 278
Query: 617 DIGXXXXXXXXXXXXKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQXX 676
G +N L + P I N NL L L +N +S + P +
Sbjct: 279 LAGLTALTNLELN--ENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSSL-------- 326
Query: 677 XXXXXXXXXXXTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDT 736
L+ L N++ + SLAN + + L G+NQ D
Sbjct: 327 --------------------TKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDL 364
Query: 737 FPCWVKNASRLHVLILRSN-------NFFGNISCPR 765
P + N +R+ L L N+ N+S P
Sbjct: 365 TP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPN 398
Score = 29.6 bits (65), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 67/251 (26%), Positives = 103/251 (41%), Gaps = 65/251 (25%)
Query: 704 LNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISC 763
+N NQ+ + P LAN + L L L NNQ D P +KN + L+ L L SN +IS
Sbjct: 92 MNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSN-TISDISA 146
Query: 764 ---------------------PRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDE 802
P N++ L+ +D++SNK S L NLE+++
Sbjct: 147 LSGLTSLQQLSFSSNQVTDLKPLANLT--TLERLDISSNKVSDISVLAKLTNLESLIATN 204
Query: 803 GRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMK----LAKILNIFTSIDFSRNNFEG 858
+ S++ L NL + +++ G ++K LA + N+ T +D + N
Sbjct: 205 NQI-SDITPLGI-LTNLDE--------LSLNGNQLKDIGTLASLTNL-TDLDLANNQISN 253
Query: 859 PIP-------EEMGL-------------LQSLCALNLSHNALTGSIPSLIGNLREIESLD 898
P E+ L L +L L L+ N L P I NL+ + L
Sbjct: 254 LAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLT 311
Query: 899 LSMNNLSGTIP 909
L NN+S P
Sbjct: 312 LYFNNISDISP 322
>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZX|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZY|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2UZY|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2WQU|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|C Chain C, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|D Chain D, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|E Chain E, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|F Chain F, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQV|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
pdb|2WQV|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
Length = 289
Score = 30.8 bits (68), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 24/40 (60%)
Query: 504 PLLTTLSLASCKLSAIPNLRKQTKLYHLDLSDNQISGEIP 543
P L +L L + K++ I L + TKL L L DNQIS +P
Sbjct: 132 PQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP 171
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 30.8 bits (68), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 24/40 (60%)
Query: 504 PLLTTLSLASCKLSAIPNLRKQTKLYHLDLSDNQISGEIP 543
P L +L L + K++ I L + TKL L L DNQIS +P
Sbjct: 131 PQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP 170
>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal
Domains
Length = 291
Score = 30.8 bits (68), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 24/40 (60%)
Query: 504 PLLTTLSLASCKLSAIPNLRKQTKLYHLDLSDNQISGEIP 543
P L +L L + K++ I L + TKL L L DNQIS +P
Sbjct: 134 PQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP 173
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 30.8 bits (68), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 24/40 (60%)
Query: 504 PLLTTLSLASCKLSAIPNLRKQTKLYHLDLSDNQISGEIP 543
P L +L L + K++ I L + TKL L L DNQIS +P
Sbjct: 154 PQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP 193
>pdb|1OTN|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 30.8 bits (68), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 24/40 (60%)
Query: 504 PLLTTLSLASCKLSAIPNLRKQTKLYHLDLSDNQISGEIP 543
P L +L L + K++ I L + TKL L L DNQIS +P
Sbjct: 152 PQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP 191
>pdb|1OTO|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 30.8 bits (68), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 24/40 (60%)
Query: 504 PLLTTLSLASCKLSAIPNLRKQTKLYHLDLSDNQISGEIP 543
P L +L L + K++ I L + TKL L L DNQIS +P
Sbjct: 152 PQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP 191
>pdb|1D0B|A Chain A, Internalin B Leucine Rich Repeat Domain
Length = 213
Score = 30.8 bits (68), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 24/40 (60%)
Query: 504 PLLTTLSLASCKLSAIPNLRKQTKLYHLDLSDNQISGEIP 543
P L +L L + K++ I L + TKL L L DNQIS +P
Sbjct: 129 PQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP 168
>pdb|1OTM|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 30.4 bits (67), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 24/40 (60%)
Query: 504 PLLTTLSLASCKLSAIPNLRKQTKLYHLDLSDNQISGEIP 543
P L +L L + K++ I L + TKL L L DNQIS +P
Sbjct: 152 PQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP 191
>pdb|2WQW|A Chain A, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQW|B Chain B, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
Length = 286
Score = 30.4 bits (67), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 24/40 (60%)
Query: 504 PLLTTLSLASCKLSAIPNLRKQTKLYHLDLSDNQISGEIP 543
P L +L L + K++ I L + TKL L L DNQIS +P
Sbjct: 129 PQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP 168
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 30.4 bits (67), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 43/96 (44%), Gaps = 6/96 (6%)
Query: 446 IPLSFFEXXXXXXXXXXXXXFVGTIELDAIQRLRNLFRLDL-SYNRLAVVAGSSVYCFPP 504
+P FE + +I A R+ +L RLDL RL ++ ++ F
Sbjct: 98 VPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAA---FEG 154
Query: 505 L--LTTLSLASCKLSAIPNLRKQTKLYHLDLSDNQI 538
L L L+L C L IPNL +L L+LS N++
Sbjct: 155 LVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRL 190
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 30.4 bits (67), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Query: 860 IPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLASLNFLS 919
+P E+ L +L L+LSHN LT S+P+ +G+ +++ +N+ T+P + +L L
Sbjct: 262 LPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYF-FDNMVTTLPWEFGNLCNLQ 319
Query: 920 VLNLSYNHL 928
L + N L
Sbjct: 320 FLGVEGNPL 328
Score = 30.0 bits (66), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 41/93 (44%), Gaps = 11/93 (11%)
Query: 633 NSLTGVIPESICNATNLLVLDLSYNYLSGM---IPTCLINMSDSQXXXXXXXXXXXXXTV 689
NSLT +P I N +NL VLDLS+N L+ + + +C T+
Sbjct: 257 NSLTE-LPAEIKNLSNLRVLDLSHNRLTSLPAELGSCF-------QLKYFYFFDNMVTTL 308
Query: 690 SATFPANCSLRTLDLNGNQLEGMVPKSLANCSV 722
F C+L+ L + GN LE K L SV
Sbjct: 309 PWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSV 341
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 30.0 bits (66), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 44/97 (45%), Gaps = 8/97 (8%)
Query: 699 LRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFF 758
L L+L NQL G+ P + S ++ L LG N+ + + N L + L++ N +
Sbjct: 56 LVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKE-----ISNKMFLGLHQLKTLNLY 110
Query: 759 GN-ISC--PRYNVSWPMLQIIDLASNKFSGRLPQKWL 792
N ISC P L ++LASN F+ W
Sbjct: 111 DNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWF 147
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 30.0 bits (66), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 43/96 (44%), Gaps = 6/96 (6%)
Query: 446 IPLSFFEXXXXXXXXXXXXXFVGTIELDAIQRLRNLFRLDL-SYNRLAVVAGSSVYCFPP 504
+P FE + +I A R+ +L RLDL RL ++ ++ F
Sbjct: 98 VPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAA---FEG 154
Query: 505 L--LTTLSLASCKLSAIPNLRKQTKLYHLDLSDNQI 538
L L L+L C L IPNL +L L+LS N++
Sbjct: 155 LVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRL 190
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 30.0 bits (66), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 45/97 (46%)
Query: 190 KLQVLSLSGCFLSGPVDPSLSNLRSLSVIRLDMNDLYSPVPEFLADFSNLTSLYLSSCGL 249
+LQ L LS C + D + L LS + L N + S P + ++L +L L
Sbjct: 57 ELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKL 116
Query: 250 HGAFPEKILQLPTLETLDLSYNELLQGSLPDFHQNLS 286
I QL TL+ L++++N + LP + NL+
Sbjct: 117 ASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLT 153
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 30.0 bits (66), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 48/99 (48%), Gaps = 4/99 (4%)
Query: 190 KLQVLSLSGCFLSGPVDPSLSNLRSLSVIRLDMNDLYSPVPEFLADFSNLTSLYLSSCGL 249
+LQ L LS C + D + L LS + L N + S P + ++L +L L
Sbjct: 52 ELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKL 111
Query: 250 HG--AFPEKILQLPTLETLDLSYNELLQGSLPDFHQNLS 286
+FP I QL TL+ L++++N + LP + NL+
Sbjct: 112 ASLESFP--IGQLITLKKLNVAHNFIHSCKLPAYFSNLT 148
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 30.0 bits (66), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 5/91 (5%)
Query: 328 SMSDLSQLVYLDMSFNHFSGPIPSLHMFRNLAYLDLSYNIFTGGISSIGWEQLLNLFHVD 387
+++L +LV ++ S P NL YL L +N + +++L NL +D
Sbjct: 107 KLTNLKELVLVENQLQ--SLPDGVFDKLTNLTYLYLYHNQLQSLPKGV-FDKLTNLTRLD 163
Query: 388 LSHNNLGGSIPQSLFE-LPMVQHLLLADNQF 417
L +N L S+P+ +F+ L ++ L L DNQ
Sbjct: 164 LDNNQL-QSLPEGVFDKLTQLKQLSLNDNQL 193
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,385,718
Number of Sequences: 62578
Number of extensions: 961078
Number of successful extensions: 2882
Number of sequences better than 100.0: 100
Number of HSP's better than 100.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 46
Number of HSP's that attempted gapping in prelim test: 1826
Number of HSP's gapped (non-prelim): 648
length of query: 1005
length of database: 14,973,337
effective HSP length: 108
effective length of query: 897
effective length of database: 8,214,913
effective search space: 7368776961
effective search space used: 7368776961
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)