Query 047927
Match_columns 1005
No_of_seqs 821 out of 5525
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 04:40:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047927.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047927hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 2.4E-68 5.1E-73 672.9 46.7 584 9-956 27-611 (968)
2 PLN00113 leucine-rich repeat r 100.0 6.6E-54 1.4E-58 541.5 40.5 513 286-953 70-585 (968)
3 KOG0472 Leucine-rich repeat pr 100.0 4.1E-38 9E-43 316.9 -12.0 481 329-929 41-541 (565)
4 KOG4194 Membrane glycoprotein 100.0 3.9E-35 8.5E-40 308.5 9.0 367 287-757 80-451 (873)
5 KOG4194 Membrane glycoprotein 100.0 1.6E-34 3.4E-39 304.0 8.0 392 54-511 52-446 (873)
6 KOG0472 Leucine-rich repeat pr 100.0 2.3E-37 5.1E-42 311.5 -13.5 469 233-784 64-541 (565)
7 KOG0618 Serine/threonine phosp 100.0 2E-34 4.3E-39 320.2 -3.8 507 242-926 3-510 (1081)
8 KOG0618 Serine/threonine phosp 100.0 3.9E-32 8.4E-37 302.0 -2.4 417 214-659 22-442 (1081)
9 KOG0444 Cytoskeletal regulator 100.0 8.8E-32 1.9E-36 284.8 -3.7 362 431-927 8-373 (1255)
10 KOG0444 Cytoskeletal regulator 100.0 7E-31 1.5E-35 278.0 -4.2 368 78-490 5-373 (1255)
11 KOG4237 Extracellular matrix p 99.9 1.3E-27 2.8E-32 241.4 -9.3 132 429-565 66-201 (498)
12 KOG4237 Extracellular matrix p 99.9 1.1E-25 2.3E-30 227.6 -4.3 416 436-926 52-498 (498)
13 PLN03210 Resistant to P. syrin 99.9 6.1E-21 1.3E-25 240.9 27.3 341 470-903 549-904 (1153)
14 PRK15387 E3 ubiquitin-protein 99.9 2.7E-21 5.8E-26 224.7 17.0 262 554-935 203-464 (788)
15 PRK15387 E3 ubiquitin-protein 99.9 3.1E-21 6.7E-26 224.2 17.4 66 845-915 403-468 (788)
16 PLN03210 Resistant to P. syrin 99.9 2.7E-20 5.8E-25 235.1 25.8 338 447-879 551-904 (1153)
17 PRK15370 E3 ubiquitin-protein 99.8 4.1E-19 8.9E-24 208.5 13.9 205 648-930 221-429 (754)
18 PRK15370 E3 ubiquitin-protein 99.8 7.7E-19 1.7E-23 206.2 12.7 202 527-784 179-380 (754)
19 cd00116 LRR_RI Leucine-rich re 99.7 6.1E-19 1.3E-23 194.1 2.1 136 621-758 21-178 (319)
20 cd00116 LRR_RI Leucine-rich re 99.7 3.4E-18 7.4E-23 188.2 2.4 257 628-931 3-293 (319)
21 KOG0617 Ras suppressor protein 99.6 7.2E-18 1.6E-22 151.2 -3.2 181 696-933 32-216 (264)
22 PLN03150 hypothetical protein; 99.6 4.5E-15 9.7E-20 174.6 11.5 117 845-961 419-538 (623)
23 KOG0617 Ras suppressor protein 99.6 5.6E-17 1.2E-21 145.6 -4.2 185 645-912 31-219 (264)
24 PLN03150 hypothetical protein; 99.4 2.1E-12 4.5E-17 152.3 12.8 128 5-141 366-502 (623)
25 KOG0532 Leucine-rich repeat (L 99.2 3.9E-13 8.5E-18 143.6 -3.2 195 626-908 78-275 (722)
26 KOG0532 Leucine-rich repeat (L 99.2 6.5E-13 1.4E-17 142.0 -2.0 158 613-783 89-246 (722)
27 KOG1909 Ran GTPase-activating 99.2 2.7E-12 5.8E-17 129.8 0.3 146 126-275 89-255 (382)
28 COG4886 Leucine-rich repeat (L 99.1 1E-10 2.3E-15 132.3 7.7 198 651-934 97-295 (394)
29 KOG1909 Ran GTPase-activating 99.1 1.3E-11 2.7E-16 125.1 -0.3 244 54-297 30-310 (382)
30 COG4886 Leucine-rich repeat (L 99.0 3.9E-10 8.4E-15 127.7 7.1 199 628-912 98-297 (394)
31 KOG3207 Beta-tubulin folding c 99.0 1.8E-10 3.8E-15 120.1 2.6 215 77-324 118-341 (505)
32 KOG1259 Nischarin, modulator o 98.9 1.8E-10 3.9E-15 113.5 1.1 88 643-735 325-413 (490)
33 KOG3207 Beta-tubulin folding c 98.9 1.4E-10 3.1E-15 120.7 -0.6 210 306-539 118-339 (505)
34 PF14580 LRR_9: Leucine-rich r 98.9 3.9E-10 8.4E-15 108.0 2.0 127 644-777 16-146 (175)
35 PF14580 LRR_9: Leucine-rich r 98.9 2.7E-09 5.8E-14 102.3 6.1 127 55-197 20-148 (175)
36 KOG4658 Apoptotic ATPase [Sign 98.9 1.5E-09 3.2E-14 130.5 4.8 107 54-172 545-653 (889)
37 PF08263 LRRNT_2: Leucine rich 98.8 2.5E-09 5.4E-14 76.4 3.8 40 10-51 2-43 (43)
38 KOG1259 Nischarin, modulator o 98.8 1.1E-09 2.5E-14 108.0 2.1 130 431-592 285-414 (490)
39 PF13855 LRR_8: Leucine rich r 98.8 4.2E-09 9.1E-14 82.7 3.3 60 869-928 2-61 (61)
40 KOG0531 Protein phosphatase 1, 98.8 1.1E-09 2.3E-14 124.0 -1.1 244 623-933 72-322 (414)
41 PF13855 LRR_8: Leucine rich r 98.7 1.2E-08 2.7E-13 80.0 3.7 59 674-732 2-60 (61)
42 KOG4658 Apoptotic ATPase [Sign 98.7 1.3E-08 2.8E-13 122.6 5.0 160 54-226 571-730 (889)
43 KOG0531 Protein phosphatase 1, 98.6 4.7E-09 1E-13 118.7 -0.9 219 645-930 70-291 (414)
44 KOG2120 SCF ubiquitin ligase, 98.6 1.9E-09 4.2E-14 106.5 -3.7 112 81-200 186-297 (419)
45 KOG2120 SCF ubiquitin ligase, 98.5 8.8E-09 1.9E-13 102.0 -3.6 158 156-319 205-373 (419)
46 KOG4579 Leucine-rich repeat (L 98.3 3.5E-08 7.6E-13 86.4 -4.5 104 845-952 54-158 (177)
47 KOG4341 F-box protein containi 98.2 6E-08 1.3E-12 101.0 -3.8 211 54-272 138-357 (483)
48 COG5238 RNA1 Ran GTPase-activa 98.2 2.8E-07 6E-12 90.4 -0.5 219 54-273 30-284 (388)
49 COG5238 RNA1 Ran GTPase-activa 98.2 4.7E-07 1E-11 88.8 0.7 168 155-322 24-227 (388)
50 KOG1859 Leucine-rich repeat pr 98.2 1.2E-07 2.6E-12 105.1 -3.9 129 431-567 165-294 (1096)
51 KOG1859 Leucine-rich repeat pr 98.1 2.7E-07 5.8E-12 102.4 -3.9 129 357-493 165-293 (1096)
52 KOG4579 Leucine-rich repeat (L 98.0 4.5E-07 9.7E-12 79.6 -1.8 61 869-931 54-115 (177)
53 KOG2982 Uncharacterized conser 98.0 1.6E-06 3.5E-11 86.3 1.3 164 377-540 93-263 (418)
54 KOG2982 Uncharacterized conser 98.0 2E-06 4.3E-11 85.7 1.8 195 553-778 72-286 (418)
55 PF12799 LRR_4: Leucine Rich r 98.0 6.3E-06 1.4E-10 58.8 3.5 36 869-905 2-37 (44)
56 PF12799 LRR_4: Leucine Rich r 97.8 1.3E-05 2.9E-10 57.2 2.9 38 892-930 1-38 (44)
57 PRK15386 type III secretion pr 97.8 6.9E-05 1.5E-09 81.1 9.4 76 667-756 48-123 (426)
58 PRK15386 type III secretion pr 97.7 0.00013 2.8E-09 79.0 8.7 135 576-731 51-187 (426)
59 KOG3665 ZYG-1-like serine/thre 97.6 2.3E-05 4.9E-10 92.5 2.2 110 160-273 121-232 (699)
60 KOG4341 F-box protein containi 97.6 4.9E-06 1.1E-10 87.1 -3.7 317 39-391 95-436 (483)
61 KOG1644 U2-associated snRNP A' 97.4 0.00028 6E-09 67.0 6.0 104 431-537 43-151 (233)
62 KOG3665 ZYG-1-like serine/thre 97.4 8.9E-05 1.9E-09 87.6 2.7 137 80-229 122-266 (699)
63 KOG1644 U2-associated snRNP A' 97.3 0.00049 1.1E-08 65.4 6.0 84 261-346 42-126 (233)
64 PF13306 LRR_5: Leucine rich r 97.0 0.0018 3.8E-08 60.1 7.3 123 617-747 6-128 (129)
65 KOG2739 Leucine-rich acidic nu 96.7 0.0019 4E-08 64.5 4.3 86 696-784 42-129 (260)
66 KOG2739 Leucine-rich acidic nu 96.7 0.0015 3.2E-08 65.2 3.6 88 101-196 61-150 (260)
67 KOG2123 Uncharacterized conser 96.4 0.00017 3.6E-09 71.6 -4.7 100 236-339 18-123 (388)
68 PF13306 LRR_5: Leucine rich r 96.3 0.0082 1.8E-07 55.5 6.3 37 232-269 30-66 (129)
69 KOG2123 Uncharacterized conser 96.2 0.00045 9.6E-09 68.7 -3.3 85 455-545 20-107 (388)
70 PF00560 LRR_1: Leucine Rich R 96.1 0.0024 5.3E-08 37.7 0.8 19 894-913 2-20 (22)
71 PF00560 LRR_1: Leucine Rich R 95.9 0.0033 7.1E-08 37.2 0.7 20 870-890 2-21 (22)
72 KOG1947 Leucine rich repeat pr 95.7 0.0023 4.9E-08 74.9 -0.8 63 211-273 241-307 (482)
73 KOG1947 Leucine rich repeat pr 95.3 0.002 4.4E-08 75.4 -3.0 36 432-467 403-440 (482)
74 KOG4308 LRR-containing protein 93.7 0.00076 1.7E-08 76.3 -11.0 173 154-346 108-303 (478)
75 KOG4308 LRR-containing protein 93.1 0.0029 6.2E-08 71.7 -7.6 192 80-275 87-304 (478)
76 KOG0473 Leucine-rich repeat pr 92.9 0.0038 8.3E-08 60.6 -5.9 84 843-929 41-124 (326)
77 PF13504 LRR_7: Leucine rich r 91.1 0.14 3E-06 28.0 1.3 12 870-881 3-14 (17)
78 KOG0473 Leucine-rich repeat pr 90.7 0.015 3.2E-07 56.7 -4.7 82 54-141 42-123 (326)
79 PF13504 LRR_7: Leucine rich r 88.7 0.25 5.5E-06 26.9 1.2 14 506-519 3-16 (17)
80 smart00369 LRR_TYP Leucine-ric 88.2 0.38 8.2E-06 29.7 1.9 14 892-905 2-15 (26)
81 smart00370 LRR Leucine-rich re 88.2 0.38 8.2E-06 29.7 1.9 14 892-905 2-15 (26)
82 PF13516 LRR_6: Leucine Rich r 85.5 0.27 5.9E-06 29.7 0.1 14 869-882 3-16 (24)
83 smart00370 LRR Leucine-rich re 85.4 0.78 1.7E-05 28.3 2.2 19 721-739 2-20 (26)
84 smart00369 LRR_TYP Leucine-ric 85.4 0.78 1.7E-05 28.3 2.2 19 721-739 2-20 (26)
85 PF13516 LRR_6: Leucine Rich r 84.6 0.17 3.8E-06 30.5 -1.0 20 892-911 2-21 (24)
86 KOG3864 Uncharacterized conser 83.1 0.19 4.2E-06 48.4 -1.8 33 239-271 103-135 (221)
87 KOG3864 Uncharacterized conser 81.6 0.37 8E-06 46.6 -0.6 41 181-221 143-184 (221)
88 smart00364 LRR_BAC Leucine-ric 72.3 2.8 6E-05 25.8 1.5 18 504-521 2-19 (26)
89 smart00365 LRR_SD22 Leucine-ri 72.1 3.1 6.7E-05 25.7 1.7 14 892-905 2-15 (26)
90 smart00368 LRR_RI Leucine rich 59.9 6.8 0.00015 24.7 1.7 13 893-905 3-15 (28)
91 TIGR00864 PCC polycystin catio 47.3 11 0.00024 51.2 2.2 32 874-905 1-32 (2740)
92 KOG4242 Predicted myosin-I-bin 44.3 58 0.0013 36.3 6.5 107 214-320 355-479 (553)
93 KOG3763 mRNA export factor TAP 42.1 7.6 0.00016 43.8 -0.3 63 674-736 219-285 (585)
94 KOG3763 mRNA export factor TAP 34.6 22 0.00047 40.4 1.6 31 506-536 220-254 (585)
95 PF10808 DUF2542: Protein of u 30.7 25 0.00055 27.7 1.0 25 980-1004 55-79 (79)
96 smart00367 LRR_CC Leucine-rich 28.4 33 0.00072 21.0 1.1 11 105-115 2-12 (26)
97 PF08693 SKG6: Transmembrane a 28.2 64 0.0014 22.4 2.4 22 981-1002 13-34 (40)
98 PRK10132 hypothetical protein; 26.7 28 0.00061 30.5 0.7 22 984-1005 87-108 (108)
99 PF04478 Mid2: Mid2 like cell 25.0 61 0.0013 30.1 2.5 23 982-1004 53-75 (154)
100 TIGR00864 PCC polycystin catio 20.7 65 0.0014 44.5 2.6 33 703-735 1-33 (2740)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2.4e-68 Score=672.92 Aligned_cols=584 Identities=37% Similarity=0.605 Sum_probs=384.2
Q ss_pred cHHHHHHHHHHhhhCCCCCCCcccccCCCCCCCCcccceeEECCCCCEEEEEcCCCCcccccCCCcccccccccceeecC
Q 047927 9 QSDQQSLLLQMKSRLTFDSSVSFRMVQWSQSNDCCTWSGVDCDEAGRVIGLDLSEESISAGIDNSSSLFSLKYLQSLNLA 88 (1005)
Q Consensus 9 ~~~~~~~ll~~k~~~~~~~~~~~~~~~w~~~~~~c~w~gv~c~~~~~v~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~Ls 88 (1005)
.++|++||++||+++. +|. +.+++|+...+||.|.||+|+..++|+.|||+++.+.+.+ +..+..+++|++|+|+
T Consensus 27 ~~~~~~~l~~~~~~~~-~~~--~~~~~w~~~~~~c~w~gv~c~~~~~v~~L~L~~~~i~~~~--~~~~~~l~~L~~L~Ls 101 (968)
T PLN00113 27 HAEELELLLSFKSSIN-DPL--KYLSNWNSSADVCLWQGITCNNSSRVVSIDLSGKNISGKI--SSAIFRLPYIQTINLS 101 (968)
T ss_pred CHHHHHHHHHHHHhCC-CCc--ccCCCCCCCCCCCcCcceecCCCCcEEEEEecCCCccccC--ChHHhCCCCCCEEECC
Confidence 5689999999999996 353 4788998788999999999987789999999999988766 6677778888888888
Q ss_pred CccCCCCCCCCccc-CCCCCcEEEcccCCCcCCCcccccCCCCCcEEeCCCcccccCccccCCCChhhhhhcCccCceee
Q 047927 89 FNMFNATEIPSGLG-NLTNLTTLNLSNAGFAGQIPIQVSGMTRLVTLDLSGMYFVRAPLKLENPNLSGLLQNLAELRELY 167 (1005)
Q Consensus 89 ~~~~~~~~lp~~l~-~l~~L~~L~Ls~n~~~~~lp~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 167 (1005)
+|.+.+. +|..+. .+++|++|++++|.+.+.+|. +.++
T Consensus 102 ~n~~~~~-ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~-------------------------------------- 140 (968)
T PLN00113 102 NNQLSGP-IPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIP-------------------------------------- 140 (968)
T ss_pred CCccCCc-CChHHhccCCCCCEEECcCCccccccCc--cccC--------------------------------------
Confidence 8777654 666544 677777777777777666653 2233
Q ss_pred cCCccCCCchhhHHHHHhccCCCccEEEccCCCCCCCCCccccCCCCCcEEECCCCCCCCCcchhccCCCCCcEEEccCC
Q 047927 168 LDGVNISAPGIEWCQALSSLVPKLQVLSLSGCFLSGPVDPSLSNLRSLSVIRLDMNDLYSPVPEFLADFSNLTSLYLSSC 247 (1005)
Q Consensus 168 l~~~~~~~~~~~~~~~l~~l~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n 247 (1005)
+|++|++++|.+.+..|..++++++|++|++++|.+.+.+|..++++++|++|++++|
T Consensus 141 ----------------------~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n 198 (968)
T PLN00113 141 ----------------------NLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASN 198 (968)
T ss_pred ----------------------CCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCC
Confidence 3444444445555555666666666777777666666666666666666666666666
Q ss_pred CCCccCccccCCCCCCCEEeCCCCCCCCCCCCcccCCCCCcEEEcccccccccCchhhccCCCCCEEeecCCccCCCCCc
Q 047927 248 GLHGAFPEKILQLPTLETLDLSYNELLQGSLPDFHQNLSLETLILSATNFSGILPDSIKNLKNLSRVEFYLCNFNGPIPT 327 (1005)
Q Consensus 248 ~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~ 327 (1005)
.+++.+|..++++++|++|++++|.+ ++.+|..++++++|++|++++|.+.+.+|.
T Consensus 199 ~l~~~~p~~l~~l~~L~~L~L~~n~l------------------------~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~ 254 (968)
T PLN00113 199 QLVGQIPRELGQMKSLKWIYLGYNNL------------------------SGEIPYEIGGLTSLNHLDLVYNNLTGPIPS 254 (968)
T ss_pred CCcCcCChHHcCcCCccEEECcCCcc------------------------CCcCChhHhcCCCCCEEECcCceeccccCh
Confidence 66666666666666666555555532 334555555555666666655555555555
Q ss_pred cCCCCCCCcEEECcCCcCccCCCcccccCcccEEECCCCcCcCCCCcccccccccccEEEcCCCcCCCccCccCCCCCCC
Q 047927 328 SMSDLSQLVYLDMSFNHFSGPIPSLHMFRNLAYLDLSYNIFTGGISSIGWEQLLNLFHVDLSHNNLGGSIPQSLFELPMV 407 (1005)
Q Consensus 328 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 407 (1005)
.++++++|++|++++|.+.+.+ |.. +..+++|++|++++|.+.+
T Consensus 255 ~l~~l~~L~~L~L~~n~l~~~~-----------------------p~~-l~~l~~L~~L~Ls~n~l~~------------ 298 (968)
T PLN00113 255 SLGNLKNLQYLFLYQNKLSGPI-----------------------PPS-IFSLQKLISLDLSDNSLSG------------ 298 (968)
T ss_pred hHhCCCCCCEEECcCCeeeccC-----------------------chh-HhhccCcCEEECcCCeecc------------
Confidence 5555555555555555443222 211 3334444444444444333
Q ss_pred CEEeCcCcccccccccccccccccCCEEeCCCCccCCCCCccccCcCCCcEEECCCCcceeccchhHHHhcCCCCeEecc
Q 047927 408 QHLLLADNQFDGHVTEISNASSSLLDTLDLSDNNLEGPIPLSFFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLS 487 (1005)
Q Consensus 408 ~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~ 487 (1005)
.+|..+..+++|+.|++++|.+.+.++. .
T Consensus 299 -------------------------------------~~p~~~~~l~~L~~L~l~~n~~~~~~~~-~------------- 327 (968)
T PLN00113 299 -------------------------------------EIPELVIQLQNLEILHLFSNNFTGKIPV-A------------- 327 (968)
T ss_pred -------------------------------------CCChhHcCCCCCcEEECCCCccCCcCCh-h-------------
Confidence 3333444445555555555544432221 1
Q ss_pred CCeeeEecCCcccccCcccceEEcCCccCcCCCCCCCCCceeEEECcCCcCCCCCChhhhhhcCCcccEEeCCCCcccCC
Q 047927 488 YNRLAVVAGSSVYCFPPLLTTLSLASCKLSAIPNLRKQTKLYHLDLSDNQISGEIPNWLWKIGKDSFNHLNLSHNLLVSL 567 (1005)
Q Consensus 488 ~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~l~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~L~~n~l~~~ 567 (1005)
+..+++|+.|++++|.+.+.+|..+..
T Consensus 328 ----------------------------------~~~l~~L~~L~L~~n~l~~~~p~~l~~------------------- 354 (968)
T PLN00113 328 ----------------------------------LTSLPRLQVLQLWSNKFSGEIPKNLGK------------------- 354 (968)
T ss_pred ----------------------------------HhcCCCCCEEECcCCCCcCcCChHHhC-------------------
Confidence 122223334444444443333332211
Q ss_pred CCCCccccCCcccEEEeccCcccccCCCCCCCcceeeCcCCcCccCCCcchhcccCceEEEEecCCcccccCChhhhccC
Q 047927 568 EQPYSISDLTSLSVLDLHSNQIQGKIPPLPPNAAYVDYSGNNFTSSIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNAT 647 (1005)
Q Consensus 568 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ls~n~~~~~~p~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~ 647 (1005)
+++|+.|++++|.+ ++.+|..++.++
T Consensus 355 --------~~~L~~L~Ls~n~l----------------------------------------------~~~~p~~~~~~~ 380 (968)
T PLN00113 355 --------HNNLTVLDLSTNNL----------------------------------------------TGEIPEGLCSSG 380 (968)
T ss_pred --------CCCCcEEECCCCee----------------------------------------------EeeCChhHhCcC
Confidence 12333333333332 223344455555
Q ss_pred CCCeEEccCccccccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCccEEeCCCCeecccCcccccCCCCCCEEE
Q 047927 648 NLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILD 727 (1005)
Q Consensus 648 ~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ 727 (1005)
+|+.|++++|++.+.+|..+..++ +|+.|++++|++++.+|..+..+++|+.|+
T Consensus 381 ~L~~L~l~~n~l~~~~p~~~~~~~--------------------------~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 434 (968)
T PLN00113 381 NLFKLILFSNSLEGEIPKSLGACR--------------------------SLRRVRLQDNSFSGELPSEFTKLPLVYFLD 434 (968)
T ss_pred CCCEEECcCCEecccCCHHHhCCC--------------------------CCCEEECcCCEeeeECChhHhcCCCCCEEE
Confidence 566666666666655555555544 444555555555555555555555555555
Q ss_pred CCCCcCCCCcchhhhcCCCCcEEecCCCcCCcccCCCCCCCCCCCccEEEccCCcccccCChHHHhhhhhhhhccCCchh
Q 047927 728 LGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQS 807 (1005)
Q Consensus 728 Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~~~~~~p~~~~~~l~~~~~~~~~~~~ 807 (1005)
+++|++++.+|.++..+++|+.|++++|++.+.+ |... ..++|+.||+++|++++.+|..+
T Consensus 435 Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~--p~~~-~~~~L~~L~ls~n~l~~~~~~~~---------------- 495 (968)
T PLN00113 435 ISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGL--PDSF-GSKRLENLDLSRNQFSGAVPRKL---------------- 495 (968)
T ss_pred CcCCcccCccChhhccCCCCcEEECcCceeeeec--Cccc-ccccceEEECcCCccCCccChhh----------------
Confidence 5555555555555555555555555555555544 3322 34677888888888887777533
Q ss_pred hhchhhheecccccccccccEEEEEcchHHHHHHhcccceEEECCCCeeeccCcccccCCCCCCEEECCCCcCcccCchh
Q 047927 808 ELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSL 887 (1005)
Q Consensus 808 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~ 887 (1005)
..++.|+.|+|++|+++|.+|+.++++++|++|+|++|.++|.+|..
T Consensus 496 ---------------------------------~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~ 542 (968)
T PLN00113 496 ---------------------------------GSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPAS 542 (968)
T ss_pred ---------------------------------hhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChh
Confidence 13567889999999999999999999999999999999999999999
Q ss_pred hhcCCCCCEEeCCCCcCcccCcccccCCCCCCeEEccCCcccccCCCCCcccccccccccCCCCCCCCC
Q 047927 888 IGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLNLSYNHLVGRIPTSTQLQSFLATSFEGNDRLWGPP 956 (1005)
Q Consensus 888 ~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~gn~~lc~~~ 956 (1005)
++++++|+.|||++|+++|.+|..+.++++|++||+++|+++|.+|..+++.++.+.+|.||+.+||++
T Consensus 543 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~ 611 (968)
T PLN00113 543 FSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGD 611 (968)
T ss_pred HhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCccccCCc
Confidence 999999999999999999999999999999999999999999999999999999999999999999865
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=6.6e-54 Score=541.54 Aligned_cols=513 Identities=36% Similarity=0.518 Sum_probs=398.4
Q ss_pred CCcEEEcccccccccCchhhccCCCCCEEeecCCccCCCCCccCC-CCCCCcEEECcCCcCccCCCcccccCcccEEECC
Q 047927 286 SLETLILSATNFSGILPDSIKNLKNLSRVEFYLCNFNGPIPTSMS-DLSQLVYLDMSFNHFSGPIPSLHMFRNLAYLDLS 364 (1005)
Q Consensus 286 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~-~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~ 364 (1005)
+++.|++++|.+++..+..+..+++|+.|++++|.+.+.+|..+. .+++|++|++++|.+.+.+|. ..+++|++|+++
T Consensus 70 ~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~-~~l~~L~~L~Ls 148 (968)
T PLN00113 70 RVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR-GSIPNLETLDLS 148 (968)
T ss_pred cEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc-cccCCCCEEECc
Confidence 455556666666666677777777777777777777776766543 677788888877777765553 335577777777
Q ss_pred CCcCcCCCCcccccccccccEEEcCCCcCCCccCccCCCCCCCCEEeCcCcccccccccccccccccCCEEeCCCCccCC
Q 047927 365 YNIFTGGISSIGWEQLLNLFHVDLSHNNLGGSIPQSLFELPMVQHLLLADNQFDGHVTEISNASSSLLDTLDLSDNNLEG 444 (1005)
Q Consensus 365 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~ 444 (1005)
+|.+++.+|.. ++.+++|++|++++|.+.+.+|..+.++++|++|++++|.+ .+
T Consensus 149 ~n~~~~~~p~~-~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l-------------------------~~ 202 (968)
T PLN00113 149 NNMLSGEIPND-IGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQL-------------------------VG 202 (968)
T ss_pred CCcccccCChH-HhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCC-------------------------cC
Confidence 77777666655 67777777777777777777777777666666666655544 34
Q ss_pred CCCccccCcCCCcEEECCCCcceeccchhHHHhcCCCCeEeccCCeeeEecCCcccccCcccceEEcCCccCcCCCC-CC
Q 047927 445 PIPLSFFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRLAVVAGSSVYCFPPLLTTLSLASCKLSAIPN-LR 523 (1005)
Q Consensus 445 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~l~~-l~ 523 (1005)
.+|..+..+++|+.|++++|++.+.+| ..+..+++|++|++++|.+... +|. +.
T Consensus 203 ~~p~~l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~------------------------~p~~l~ 257 (968)
T PLN00113 203 QIPRELGQMKSLKWIYLGYNNLSGEIP-YEIGGLTSLNHLDLVYNNLTGP------------------------IPSSLG 257 (968)
T ss_pred cCChHHcCcCCccEEECcCCccCCcCC-hhHhcCCCCCEEECcCceeccc------------------------cChhHh
Confidence 555556666666666666666654444 3355555555555555544321 121 55
Q ss_pred CCCceeEEECcCCcCCCCCChhhhhhcCCcccEEeCCCCcccCCCCCCccccCCcccEEEeccCcccccCCCCCCCccee
Q 047927 524 KQTKLYHLDLSDNQISGEIPNWLWKIGKDSFNHLNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIPPLPPNAAYV 603 (1005)
Q Consensus 524 ~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 603 (1005)
.+++|++|++++|.+.+.+|..+.. +++|++|++++|.+.+.+|.
T Consensus 258 ~l~~L~~L~L~~n~l~~~~p~~l~~---------------------------l~~L~~L~Ls~n~l~~~~p~-------- 302 (968)
T PLN00113 258 NLKNLQYLFLYQNKLSGPIPPSIFS---------------------------LQKLISLDLSDNSLSGEIPE-------- 302 (968)
T ss_pred CCCCCCEEECcCCeeeccCchhHhh---------------------------ccCcCEEECcCCeeccCCCh--------
Confidence 5566677777777766666655432 34566666666666554442
Q ss_pred eCcCCcCccCCCcchhcccCceEEEEecCCcccccCChhhhccCCCCeEEccCccccccCCchhhhcCcccccEEECCCC
Q 047927 604 DYSGNNFTSSIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRN 683 (1005)
Q Consensus 604 ~ls~n~~~~~~p~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n 683 (1005)
.+. .++.|++|++++|.+++.+|..+..+++|+.|++++|.+++.+|..+..+. +|+.|++++|
T Consensus 303 -------------~~~-~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~--~L~~L~Ls~n 366 (968)
T PLN00113 303 -------------LVI-QLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHN--NLTVLDLSTN 366 (968)
T ss_pred -------------hHc-CCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCC--CCcEEECCCC
Confidence 222 356677777778888888888899999999999999999999999999887 8999999999
Q ss_pred cCCccccCccCCCCCccEEeCCCCeecccCcccccCCCCCCEEECCCCcCCCCcchhhhcCCCCcEEecCCCcCCcccCC
Q 047927 684 NLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISC 763 (1005)
Q Consensus 684 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~ 763 (1005)
++++..|..+..+++|+.|++++|++.+.+|..+..+++|+.|++++|++++.+|..|.++++|+.|++++|++++.+
T Consensus 367 ~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-- 444 (968)
T PLN00113 367 NLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRI-- 444 (968)
T ss_pred eeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCcc--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCCCCCCCccEEEccCCcccccCChHHHhhhhhhhhccCCchhhhchhhheecccccccccccEEEEEcchHHHHHHhc
Q 047927 764 PRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKIL 843 (1005)
Q Consensus 764 ~~~~~~l~~L~~L~ls~N~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 843 (1005)
|.....+++|+.|++++|++.|.+|..+ ..
T Consensus 445 ~~~~~~l~~L~~L~L~~n~~~~~~p~~~--------------------------------------------------~~ 474 (968)
T PLN00113 445 NSRKWDMPSLQMLSLARNKFFGGLPDSF--------------------------------------------------GS 474 (968)
T ss_pred ChhhccCCCCcEEECcCceeeeecCccc--------------------------------------------------cc
Confidence 7788899999999999999999888532 13
Q ss_pred ccceEEECCCCeeeccCcccccCCCCCCEEECCCCcCcccCchhhhcCCCCCEEeCCCCcCcccCcccccCCCCCCeEEc
Q 047927 844 NIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLNL 923 (1005)
Q Consensus 844 ~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~l 923 (1005)
+.|+.||+++|+++|.+|..++++++|+.|+|++|+++|.+|..++++++|++|+|++|+++|.+|..++++++|+.||+
T Consensus 475 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 554 (968)
T PLN00113 475 KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDL 554 (968)
T ss_pred ccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEEC
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcccccCCCCCc-ccccccccccCCCCCC
Q 047927 924 SYNHLVGRIPTSTQ-LQSFLATSFEGNDRLW 953 (1005)
Q Consensus 924 s~N~l~g~ip~~~~-~~~~~~~~~~gn~~lc 953 (1005)
++|+++|.+|.... +..+......+|+..+
T Consensus 555 s~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~ 585 (968)
T PLN00113 555 SQNQLSGEIPKNLGNVESLVQVNISHNHLHG 585 (968)
T ss_pred CCCcccccCChhHhcCcccCEEeccCCccee
Confidence 99999999997532 2334444555665443
No 3
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=4.1e-38 Score=316.91 Aligned_cols=481 Identities=26% Similarity=0.331 Sum_probs=335.2
Q ss_pred CCCCCCCcEEECcCCcCccCCCcccccCcccEEECCCCcCcCCCCcccccccccccEEEcCCCcCCCccCccCCCCCCCC
Q 047927 329 MSDLSQLVYLDMSFNHFSGPIPSLHMFRNLAYLDLSYNIFTGGISSIGWEQLLNLFHVDLSHNNLGGSIPQSLFELPMVQ 408 (1005)
Q Consensus 329 l~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 408 (1005)
+..-.-|+.+.+++|.+....+....+..+.++++++|.++. .|.. ++.+..++.++.++|++. .+|+.+....++.
T Consensus 41 wW~qv~l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l~~-lp~a-ig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~ 117 (565)
T KOG0472|consen 41 WWEQVDLQKLILSHNDLEVLREDLKNLACLTVLNVHDNKLSQ-LPAA-IGELEALKSLNVSHNKLS-ELPEQIGSLISLV 117 (565)
T ss_pred hhhhcchhhhhhccCchhhccHhhhcccceeEEEeccchhhh-CCHH-HHHHHHHHHhhcccchHh-hccHHHhhhhhhh
Confidence 334456777788888777766777777778888888887773 4444 677788888888888887 7788888888888
Q ss_pred EEeCcCcccccccccccccccccCCEEeCCCCccCCCCCccccCcCCCcEEECCCCcceeccchhHHHhcCCCCeEeccC
Q 047927 409 HLLLADNQFDGHVTEISNASSSLLDTLDLSDNNLEGPIPLSFFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSY 488 (1005)
Q Consensus 409 ~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~ 488 (1005)
.++.+.|.+....+.+.. +..++.++..+|+++ ..|..+.++.++..+++.+|++. ..+++.+. ++.|++++...
T Consensus 118 ~l~~s~n~~~el~~~i~~--~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~-~l~~~~i~-m~~L~~ld~~~ 192 (565)
T KOG0472|consen 118 KLDCSSNELKELPDSIGR--LLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLK-ALPENHIA-MKRLKHLDCNS 192 (565)
T ss_pred hhhccccceeecCchHHH--Hhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchh-hCCHHHHH-HHHHHhcccch
Confidence 888888877655554443 345777788888887 57778888889999999999887 66666555 88899999999
Q ss_pred CeeeEecCCcccccCcccceEEcCCccCcCCCCCCCCCceeEEECcCCcCCCCCChhhhhhcCCcccEEeCCCCcccCCC
Q 047927 489 NRLAVVAGSSVYCFPPLLTTLSLASCKLSAIPNLRKQTKLYHLDLSDNQISGEIPNWLWKIGKDSFNHLNLSHNLLVSLE 568 (1005)
Q Consensus 489 n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~l~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~L~~n~l~~~~ 568 (1005)
|.+..+|... ....+|..|++++|+|..+|.|.+|..|++++++.|+|. .+|.....
T Consensus 193 N~L~tlP~~l--g~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~-~lpae~~~-------------------- 249 (565)
T KOG0472|consen 193 NLLETLPPEL--GGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIE-MLPAEHLK-------------------- 249 (565)
T ss_pred hhhhcCChhh--cchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHH-hhHHHHhc--------------------
Confidence 9888887652 445668888899999999999999999999999888887 66665432
Q ss_pred CCCccccCCcccEEEeccCcccccCCCCCCCcceeeCcCCcCccCCCcchhcccCceEEEEecCCcccccCChhhhccCC
Q 047927 569 QPYSISDLTSLSVLDLHSNQIQGKIPPLPPNAAYVDYSGNNFTSSIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNATN 648 (1005)
Q Consensus 569 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ls~n~~~~~~p~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~ 648 (1005)
+++++..||+++|++. +.|+.+. .+.+|++||+++|.++ ..|..++++ .
T Consensus 250 ------~L~~l~vLDLRdNklk----------------------e~Pde~c-lLrsL~rLDlSNN~is-~Lp~sLgnl-h 298 (565)
T KOG0472|consen 250 ------HLNSLLVLDLRDNKLK----------------------EVPDEIC-LLRSLERLDLSNNDIS-SLPYSLGNL-H 298 (565)
T ss_pred ------ccccceeeeccccccc----------------------cCchHHH-HhhhhhhhcccCCccc-cCCcccccc-e
Confidence 3455666666666665 3344443 2455666666666666 456677888 8
Q ss_pred CCeEEccCccccccCCchhhhcCc-ccccEEE-------CCCCcC----Ccc-ccCccC---CCCCccEEeCCCCeeccc
Q 047927 649 LLVLDLSYNYLSGMIPTCLINMSD-SQLGVLN-------LRRNNL----NGT-VSATFP---ANCSLRTLDLNGNQLEGM 712 (1005)
Q Consensus 649 L~~L~Ls~N~l~~~~p~~~~~l~~-~~L~~L~-------L~~n~l----~~~-~~~~~~---~l~~L~~L~L~~N~l~~~ 712 (1005)
|+.|-+.+|.+.. +-..+.+... .-|++|. ++.-.- .+. .+..|. .+.+.+.|++++-+++.
T Consensus 299 L~~L~leGNPlrT-iRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~- 376 (565)
T KOG0472|consen 299 LKFLALEGNPLRT-IRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTL- 376 (565)
T ss_pred eeehhhcCCchHH-HHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhccccccccc-
Confidence 8888888887752 2211111110 0011110 111000 000 111222 23467788888888884
Q ss_pred CcccccCCCC---CCEEECCCCcCCCCcchhhhcCCCCcE-EecCCCcCCcccCCCCCCCCCCCccEEEccCCcccccCC
Q 047927 713 VPKSLANCSV---LEILDLGNNQFDDTFPCWVKNASRLHV-LILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLP 788 (1005)
Q Consensus 713 ~p~~l~~l~~---L~~L~Ls~N~l~~~~p~~~~~l~~L~~-L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~~~~~~p 788 (1005)
+|+....... .+..+++.|++. .+|..+..+..+.+ +.+++|.+ +.+ |..+..+++|..|++++|.+. .+|
T Consensus 377 VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~i-sfv--~~~l~~l~kLt~L~L~NN~Ln-~LP 451 (565)
T KOG0472|consen 377 VPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKI-SFV--PLELSQLQKLTFLDLSNNLLN-DLP 451 (565)
T ss_pred CCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCcc-ccc--hHHHHhhhcceeeecccchhh-hcc
Confidence 4544333322 678888888887 46776666666655 44455544 334 777888888888888888765 556
Q ss_pred hHHHhhhhhhhhccCCchhhhchhhheecccccccccccEEEEEcchHHHHHHhcccceEEECCCCeeeccCcccccCCC
Q 047927 789 QKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQ 868 (1005)
Q Consensus 789 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~ 868 (1005)
.+.+ .+..|+.||+|.|+|. .+|+.+..+.
T Consensus 452 ~e~~-------------------------------------------------~lv~Lq~LnlS~NrFr-~lP~~~y~lq 481 (565)
T KOG0472|consen 452 EEMG-------------------------------------------------SLVRLQTLNLSFNRFR-MLPECLYELQ 481 (565)
T ss_pred hhhh-------------------------------------------------hhhhhheecccccccc-cchHHHhhHH
Confidence 5442 2445788899999887 7888888888
Q ss_pred CCCEEECCCCcCcccCchhhhcCCCCCEEeCCCCcCcccCcccccCCCCCCeEEccCCccc
Q 047927 869 SLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLNLSYNHLV 929 (1005)
Q Consensus 869 ~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~ 929 (1005)
.++.+--++|++...-|+.+.+|++|..|||.+|.+. .||..++++++|+.|++++|++.
T Consensus 482 ~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 482 TLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred HHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 8887777788888666666999999999999999998 78888999999999999999987
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=3.9e-35 Score=308.54 Aligned_cols=367 Identities=30% Similarity=0.369 Sum_probs=210.9
Q ss_pred CcEEEcccccccccCchhhccCCCCCEEeecCCccCCCCCccCCCCCCCcEEECcCCcCccCCCcccccCcccEEECCCC
Q 047927 287 LETLILSATNFSGILPDSIKNLKNLSRVEFYLCNFNGPIPTSMSDLSQLVYLDMSFNHFSGPIPSLHMFRNLAYLDLSYN 366 (1005)
Q Consensus 287 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n 366 (1005)
-++|++++|++...-+..|.++++|+++++..|.++ .+|.......+|+.|+|.+|.++
T Consensus 80 t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~-------------------- 138 (873)
T KOG4194|consen 80 TQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLIS-------------------- 138 (873)
T ss_pred eeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccc--------------------
Confidence 344555555555555555556666666655555554 33433333334555555555443
Q ss_pred cCcCCCCcccccccccccEEEcCCCcCCCccCccCCCCCCCCEEeCcCcccccccccccccccccCCEEeCCCCccCCCC
Q 047927 367 IFTGGISSIGWEQLLNLFHVDLSHNNLGGSIPQSLFELPMVQHLLLADNQFDGHVTEISNASSSLLDTLDLSDNNLEGPI 446 (1005)
Q Consensus 367 ~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~ 446 (1005)
.+....++.++.|+.|||+.|.++..-...+..-.+++ +|++++|.|+..-
T Consensus 139 ----sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~-------------------------~L~La~N~It~l~ 189 (873)
T KOG4194|consen 139 ----SVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIK-------------------------KLNLASNRITTLE 189 (873)
T ss_pred ----cccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCce-------------------------EEeeccccccccc
Confidence 22233355566666666666666522222233323333 4444444444444
Q ss_pred CccccCcCCCcEEECCCCcceeccchhHHHhcCCCCeEeccCCeeeEecCCcccccCcccceEEcCCccCcCCCC--CCC
Q 047927 447 PLSFFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRLAVVAGSSVYCFPPLLTTLSLASCKLSAIPN--LRK 524 (1005)
Q Consensus 447 ~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~l~~--l~~ 524 (1005)
...|.++.+|..|.|+.|+++ .+|...|+.+++|+.|++..|++..+....|.+ .++|+.|.+..|++..+.+ |..
T Consensus 190 ~~~F~~lnsL~tlkLsrNrit-tLp~r~Fk~L~~L~~LdLnrN~irive~ltFqg-L~Sl~nlklqrN~I~kL~DG~Fy~ 267 (873)
T KOG4194|consen 190 TGHFDSLNSLLTLKLSRNRIT-TLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQG-LPSLQNLKLQRNDISKLDDGAFYG 267 (873)
T ss_pred cccccccchheeeecccCccc-ccCHHHhhhcchhhhhhccccceeeehhhhhcC-chhhhhhhhhhcCcccccCcceee
Confidence 455666666666666666666 666666666666666666666666555444333 3345666666666665554 666
Q ss_pred CCceeEEECcCCcCCCCCChhhhhhcCCcccEEeCCCCcccCCCCCCccccCCcccEEEeccCcccccCCCCCCCcceee
Q 047927 525 QTKLYHLDLSDNQISGEIPNWLWKIGKDSFNHLNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIPPLPPNAAYVD 604 (1005)
Q Consensus 525 l~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 604 (1005)
+.++++|+|+.|+++..-..|++. +++|+.|++++|.+..
T Consensus 268 l~kme~l~L~~N~l~~vn~g~lfg---------------------------Lt~L~~L~lS~NaI~r------------- 307 (873)
T KOG4194|consen 268 LEKMEHLNLETNRLQAVNEGWLFG---------------------------LTSLEQLDLSYNAIQR------------- 307 (873)
T ss_pred ecccceeecccchhhhhhcccccc---------------------------cchhhhhccchhhhhe-------------
Confidence 677777777777777555555443 3445555555555442
Q ss_pred CcCCcCccCCCcchhcccCceEEEEecCCcccccCChhhhccCCCCeEEccCccccccCCchhhhcCcccccEEECCCCc
Q 047927 605 YSGNNFTSSIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNN 684 (1005)
Q Consensus 605 ls~n~~~~~~p~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~ 684 (1005)
|..+-+.+++.|++|++++|+++...+..|..+..|++|.|++|.++..--..|..++ +|++|||++|.
T Consensus 308 ---------ih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~ls--sL~~LdLr~N~ 376 (873)
T KOG4194|consen 308 ---------IHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLS--SLHKLDLRSNE 376 (873)
T ss_pred ---------eecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhh--hhhhhcCcCCe
Confidence 1112223445555555555555555566666666666666666666644444555555 66666666666
Q ss_pred CCcccc---CccCCCCCccEEeCCCCeecccCcccccCCCCCCEEECCCCcCCCCcchhhhcCCCCcEEecCCCcC
Q 047927 685 LNGTVS---ATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNF 757 (1005)
Q Consensus 685 l~~~~~---~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l 757 (1005)
++..+. ..|.++++|+.|++.+|++..+...+|.++..|+.|||.+|.|..+-|..|..+ .|++|.+..-.|
T Consensus 377 ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssf 451 (873)
T KOG4194|consen 377 LSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSF 451 (873)
T ss_pred EEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccce
Confidence 665543 346667777777777777776666677777777777777777777777777776 666666655443
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=1.6e-34 Score=304.04 Aligned_cols=392 Identities=24% Similarity=0.253 Sum_probs=285.3
Q ss_pred CCEEEEEcCCCCcccccCCCcccccc--cccceeecCCccCCCCCCCCcccCCCCCcEEEcccCCCcCCCcccccCCCCC
Q 047927 54 GRVIGLDLSEESISAGIDNSSSLFSL--KYLQSLNLAFNMFNATEIPSGLGNLTNLTTLNLSNAGFAGQIPIQVSGMTRL 131 (1005)
Q Consensus 54 ~~v~~L~L~~~~l~~~~~~~~~l~~l--~~L~~L~Ls~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~l~~l~~L 131 (1005)
.+.+.||.++..+...- ...+..+ ..-+.||+++|.+... -+..|.++++|+.+++.+|.+. .+|...+...+|
T Consensus 52 c~~~lldcs~~~lea~~--~~~l~g~lp~~t~~LdlsnNkl~~i-d~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl 127 (873)
T KOG4194|consen 52 CNTRLLDCSDRELEAID--KSRLKGFLPSQTQTLDLSNNKLSHI-DFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHL 127 (873)
T ss_pred CCceeeecCcccccccc--ccccCCcCccceeeeeccccccccC-cHHHHhcCCcceeeeeccchhh-hcccccccccce
Confidence 35666777776665311 1122221 2334577777776554 3455666777777777777665 666555555556
Q ss_pred cEEeCCCcccccCccccCCCChhhhhhcCccCceeecCCccCCCchhhHHHHHhccCCCccEEEccCCCCCCCCCccccC
Q 047927 132 VTLDLSGMYFVRAPLKLENPNLSGLLQNLAELRELYLDGVNISAPGIEWCQALSSLVPKLQVLSLSGCFLSGPVDPSLSN 211 (1005)
Q Consensus 132 ~~L~ls~n~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~L~~L~L~~n~~~~~~~~~l~~ 211 (1005)
++|+|.+|.| +....+.+..+ +.|+.|||+.|.++...-..|..
T Consensus 128 ~~L~L~~N~I--------------------------------~sv~se~L~~l----~alrslDLSrN~is~i~~~sfp~ 171 (873)
T KOG4194|consen 128 EKLDLRHNLI--------------------------------SSVTSEELSAL----PALRSLDLSRNLISEIPKPSFPA 171 (873)
T ss_pred eEEeeecccc--------------------------------ccccHHHHHhH----hhhhhhhhhhchhhcccCCCCCC
Confidence 6666666654 33333333332 78889999999888877788888
Q ss_pred CCCCcEEECCCCCCCCCcchhccCCCCCcEEEccCCCCCccCccccCCCCCCCEEeCCCCCCCCCCCCcccCCCCCcEEE
Q 047927 212 LRSLSVIRLDMNDLYSPVPEFLADFSNLTSLYLSSCGLHGAFPEKILQLPTLETLDLSYNELLQGSLPDFHQNLSLETLI 291 (1005)
Q Consensus 212 l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~L~~L~ 291 (1005)
-.++++|+|++|.++..-...|..+.+|..|.|+.|+++...+..|.++++|+.|+|..|+|.......|.++++|+.|.
T Consensus 172 ~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlk 251 (873)
T KOG4194|consen 172 KVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLK 251 (873)
T ss_pred CCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhh
Confidence 89999999999999888778899999999999999999977777888899999999999999888888999999999999
Q ss_pred cccccccccCchhhccCCCCCEEeecCCccCCCCCccCCCCCCCcEEECcCCcCccCCC-cccccCcccEEECCCCcCcC
Q 047927 292 LSATNFSGILPDSIKNLKNLSRVEFYLCNFNGPIPTSMSDLSQLVYLDMSFNHFSGPIP-SLHMFRNLAYLDLSYNIFTG 370 (1005)
Q Consensus 292 L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~~~~~L~~L~L~~n~l~~ 370 (1005)
|..|++...-...|..+.++++|++..|++...-..++.++++|+.|++++|.+...-. .|....+|++|+|++|.++.
T Consensus 252 lqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~ 331 (873)
T KOG4194|consen 252 LQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITR 331 (873)
T ss_pred hhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEecccccccc
Confidence 99999998888889999999999999999998888889999999999999999876444 44444588888888888884
Q ss_pred CCCcccccccccccEEEcCCCcCCCccCccCCCCCCCCEEeCcCcccccccccccccccccCCEEeCCCCccCCCCCccc
Q 047927 371 GISSIGWEQLLNLFHVDLSHNNLGGSIPQSLFELPMVQHLLLADNQFDGHVTEISNASSSLLDTLDLSDNNLEGPIPLSF 450 (1005)
Q Consensus 371 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l 450 (1005)
+++..|..+..|++|.|++|+++..-...|..+.+|++|+++.|.+...+.+. ...|
T Consensus 332 -l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDa----------------------a~~f 388 (873)
T KOG4194|consen 332 -LDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDA----------------------AVAF 388 (873)
T ss_pred -CChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecc----------------------hhhh
Confidence 45555888888888888888887555555667777777777777766544331 2234
Q ss_pred cCcCCCcEEECCCCcceeccchhHHHhcCCCCeEeccCCeeeEecCCcccccCcccceEEc
Q 047927 451 FELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRLAVVAGSSVYCFPPLLTTLSL 511 (1005)
Q Consensus 451 ~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L 511 (1005)
..+++|+.|.+.+|++. .|+..+|.++++|++|++.+|.+..+...+|... .|++|.+
T Consensus 389 ~gl~~LrkL~l~gNqlk-~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m--~Lk~Lv~ 446 (873)
T KOG4194|consen 389 NGLPSLRKLRLTGNQLK-SIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM--ELKELVM 446 (873)
T ss_pred ccchhhhheeecCceee-ecchhhhccCcccceecCCCCcceeecccccccc--hhhhhhh
Confidence 45566666666666665 5666666666666666666666666655554433 3555544
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=2.3e-37 Score=311.52 Aligned_cols=469 Identities=26% Similarity=0.357 Sum_probs=324.3
Q ss_pred ccCCCCCcEEEccCCCCCccCccccCCCCCCCEEeCCCCCCCCCCCCcccCCCCCcEEEcccccccccCchhhccCCCCC
Q 047927 233 LADFSNLTSLYLSSCGLHGAFPEKILQLPTLETLDLSYNELLQGSLPDFHQNLSLETLILSATNFSGILPDSIKNLKNLS 312 (1005)
Q Consensus 233 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 312 (1005)
+.++..+.+|++++|++. ..|.+++.+..++.++.++|.+ + .+|+.++.+.+|.
T Consensus 64 l~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~l------------------------s-~lp~~i~s~~~l~ 117 (565)
T KOG0472|consen 64 LKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKL------------------------S-ELPEQIGSLISLV 117 (565)
T ss_pred hhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchH------------------------h-hccHHHhhhhhhh
Confidence 445555666666666655 4555566555555555555543 2 5566667777777
Q ss_pred EEeecCCccCCCCCccCCCCCCCcEEECcCCcCccCCCcccccCcccEEECCCCcCcCCCCcccccccccccEEEcCCCc
Q 047927 313 RVEFYLCNFNGPIPTSMSDLSQLVYLDMSFNHFSGPIPSLHMFRNLAYLDLSYNIFTGGISSIGWEQLLNLFHVDLSHNN 392 (1005)
Q Consensus 313 ~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~ 392 (1005)
+++++.|.+. .+|+.++.+..|+.++..+|++...++++..+.++..+++.+|++.. .|...+ +++.|+++|..+|-
T Consensus 118 ~l~~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~-l~~~~i-~m~~L~~ld~~~N~ 194 (565)
T KOG0472|consen 118 KLDCSSNELK-ELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKA-LPENHI-AMKRLKHLDCNSNL 194 (565)
T ss_pred hhhcccccee-ecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhh-CCHHHH-HHHHHHhcccchhh
Confidence 7777777665 45556777777777777777777777777767777778888887774 333323 48888888888888
Q ss_pred CCCccCccCCCCCCCCEEeCcCcccccccccccccccccCCEEeCCCCccCCCCCccccCcCCCcEEECCCCcceeccch
Q 047927 393 LGGSIPQSLFELPMVQHLLLADNQFDGHVTEISNASSSLLDTLDLSDNNLEGPIPLSFFELKNLKILLLSSNKFVGTIEL 472 (1005)
Q Consensus 393 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 472 (1005)
++ .+|+.++.+.+|.-|++..|++. ..| .|..+..|+++.++.|++. .+|.
T Consensus 195 L~-tlP~~lg~l~~L~~LyL~~Nki~--------------------------~lP-ef~gcs~L~Elh~g~N~i~-~lpa 245 (565)
T KOG0472|consen 195 LE-TLPPELGGLESLELLYLRRNKIR--------------------------FLP-EFPGCSLLKELHVGENQIE-MLPA 245 (565)
T ss_pred hh-cCChhhcchhhhHHHHhhhcccc--------------------------cCC-CCCccHHHHHHHhcccHHH-hhHH
Confidence 77 78888888877777777777654 344 5777777778888777776 6777
Q ss_pred hHHHhcCCCCeEeccCCeeeEecCCcccccCcccceEEcCCccCcCCCC-CCCCCceeEEECcCCcCCCCCChhhhhhcC
Q 047927 473 DAIQRLRNLFRLDLSYNRLAVVAGSSVYCFPPLLTTLSLASCKLSAIPN-LRKQTKLYHLDLSDNQISGEIPNWLWKIGK 551 (1005)
Q Consensus 473 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~l~~-l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~ 551 (1005)
+...++.++.+||+..|+++.+|+. .+...+|++|++++|.|+.+|. ++++ .|+.|-+.+|.+. .+-..+...+.
T Consensus 246 e~~~~L~~l~vLDLRdNklke~Pde--~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlr-TiRr~ii~~gT 321 (565)
T KOG0472|consen 246 EHLKHLNSLLVLDLRDNKLKEVPDE--ICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLR-TIRREIISKGT 321 (565)
T ss_pred HHhcccccceeeeccccccccCchH--HHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchH-HHHHHHHcccH
Confidence 7777788888888888888777765 3555668888888888888887 8888 8899999999875 22222211111
Q ss_pred -CcccEEeC--CCCcccCCCCCCccccCCcccEEEeccCcccccCCCC--CCCcceeeCcCCcCccCCCcchhcccC--c
Q 047927 552 -DSFNHLNL--SHNLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIPPL--PPNAAYVDYSGNNFTSSIPVDIGSFMS--L 624 (1005)
Q Consensus 552 -~~L~~L~L--~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~--~~~l~~L~ls~n~~~~~~p~~~~~~~~--~ 624 (1005)
.-+++|.= ..-.++.-... +-..-+ ...+.+|.. ..+.+.|+++.-+++ .+|+..|.... -
T Consensus 322 ~~vLKyLrs~~~~dglS~se~~-------~e~~~t----~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~ 389 (565)
T KOG0472|consen 322 QEVLKYLRSKIKDDGLSQSEGG-------TETAMT----LPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEI 389 (565)
T ss_pred HHHHHHHHHhhccCCCCCCccc-------ccccCC----CCCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcc
Confidence 11222110 00000000000 000000 000111111 124566666666666 67776664322 3
Q ss_pred eEEEEecCCcccccCChhhhccCCCCe-EEccCccccccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCccEEe
Q 047927 625 SIFFSFSKNSLTGVIPESICNATNLLV-LDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLD 703 (1005)
Q Consensus 625 L~~L~l~~n~l~~~~p~~l~~l~~L~~-L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 703 (1005)
.+..++++|++. .+|..+..+..+.+ +++++|.+ +.+|..+..++ +|..|+|++|-+. .+|..++.+..||.|+
T Consensus 390 Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~i-sfv~~~l~~l~--kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~Ln 464 (565)
T KOG0472|consen 390 VTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKI-SFVPLELSQLQ--KLTFLDLSNNLLN-DLPEEMGSLVRLQTLN 464 (565)
T ss_pred eEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCcc-ccchHHHHhhh--cceeeecccchhh-hcchhhhhhhhhheec
Confidence 677889999987 56777776666554 45555555 48898899888 8999999999887 4567777788899999
Q ss_pred CCCCeecccCcccccCCCCCCEEECCCCcCCCCcchhhhcCCCCcEEecCCCcCCcccCCCCCCCCCCCccEEEccCCcc
Q 047927 704 LNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKF 783 (1005)
Q Consensus 704 L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~~ 783 (1005)
++.|++. .+|+.+..+..++.+-.++|++..+.|..+.++.+|.+|||.+|.+.. + |..++++.+|+.|++++|+|
T Consensus 465 lS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~-I--Pp~LgnmtnL~hLeL~gNpf 540 (565)
T KOG0472|consen 465 LSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQ-I--PPILGNMTNLRHLELDGNPF 540 (565)
T ss_pred ccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhh-C--ChhhccccceeEEEecCCcc
Confidence 9999999 789999999999999999999999888889999999999999999874 3 89999999999999999999
Q ss_pred c
Q 047927 784 S 784 (1005)
Q Consensus 784 ~ 784 (1005)
.
T Consensus 541 r 541 (565)
T KOG0472|consen 541 R 541 (565)
T ss_pred C
Confidence 8
No 7
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.97 E-value=2e-34 Score=320.17 Aligned_cols=507 Identities=27% Similarity=0.346 Sum_probs=280.0
Q ss_pred EEccCCCCCccCccccCCCCCCCEEeCCCCCCCCCCCCcccCCCCCcEEEcccccccccCchhhccCCCCCEEeecCCcc
Q 047927 242 LYLSSCGLHGAFPEKILQLPTLETLDLSYNELLQGSLPDFHQNLSLETLILSATNFSGILPDSIKNLKNLSRVEFYLCNF 321 (1005)
Q Consensus 242 L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~ 321 (1005)
+|++.+.+. .+|..+..-..++.|+++.|.....+.+...+.-+|+.|++++|.+. ..|..+..+.+|+.|+++.|.+
T Consensus 3 vd~s~~~l~-~ip~~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i 80 (1081)
T KOG0618|consen 3 VDASDEQLE-LIPEQILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYI 80 (1081)
T ss_pred cccccccCc-ccchhhccHHHHHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhH
Confidence 455555555 55665555555777777777655444444444445666666666654 5566666666777777766665
Q ss_pred CCCCCccCCCCCCCcEEECcCCcCccCCCcccccCcccEEECCCCcCcCCCCcccccccccccEEEcCCCcCCCccCccC
Q 047927 322 NGPIPTSMSDLSQLVYLDMSFNHFSGPIPSLHMFRNLAYLDLSYNIFTGGISSIGWEQLLNLFHVDLSHNNLGGSIPQSL 401 (1005)
Q Consensus 322 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l 401 (1005)
. ..|....++.+|+++.|.+|.+...+.. +..+++|++|+++.|.+. .+|..+
T Consensus 81 ~-~vp~s~~~~~~l~~lnL~~n~l~~lP~~-------------------------~~~lknl~~LdlS~N~f~-~~Pl~i 133 (1081)
T KOG0618|consen 81 R-SVPSSCSNMRNLQYLNLKNNRLQSLPAS-------------------------ISELKNLQYLDLSFNHFG-PIPLVI 133 (1081)
T ss_pred h-hCchhhhhhhcchhheeccchhhcCchh-------------------------HHhhhcccccccchhccC-CCchhH
Confidence 5 3445566666666666666665533333 444555555555555554 455555
Q ss_pred CCCCCCCEEeCcCcccccccccccccccccCCEEeCCCCccCCCCCccccCcCCCcEEECCCCcceeccchhHHHhcCCC
Q 047927 402 FELPMVQHLLLADNQFDGHVTEISNASSSLLDTLDLSDNNLEGPIPLSFFELKNLKILLLSSNKFVGTIELDAIQRLRNL 481 (1005)
Q Consensus 402 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L 481 (1005)
..+..+..+..++|... ..... ..++.+++..|.+.+.++..+..++. .|+|++|.+. . ..+..+.+|
T Consensus 134 ~~lt~~~~~~~s~N~~~---~~lg~---~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~---~dls~~~~l 201 (1081)
T KOG0618|consen 134 EVLTAEEELAASNNEKI---QRLGQ---TSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-V---LDLSNLANL 201 (1081)
T ss_pred HhhhHHHHHhhhcchhh---hhhcc---ccchhhhhhhhhcccchhcchhhhhe--eeecccchhh-h---hhhhhccch
Confidence 55555555555555111 11111 11566677777777777666666665 6888888875 2 346778888
Q ss_pred CeEeccCCeeeEecCCcccccCcccceEEcCCccCcCCCCCCCCCceeEEECcCCcCCCCCChhhhhhcCCcccEEeCCC
Q 047927 482 FRLDLSYNRLAVVAGSSVYCFPPLLTTLSLASCKLSAIPNLRKQTKLYHLDLSDNQISGEIPNWLWKIGKDSFNHLNLSH 561 (1005)
Q Consensus 482 ~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~l~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~L~~ 561 (1005)
+.+....|++..+.... ++++.|+..+|.++.+..-....+|+.++++.|+++ .+|+|+.
T Consensus 202 ~~l~c~rn~ls~l~~~g-----~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~-~lp~wi~-------------- 261 (1081)
T KOG0618|consen 202 EVLHCERNQLSELEISG-----PSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLS-NLPEWIG-------------- 261 (1081)
T ss_pred hhhhhhhcccceEEecC-----cchheeeeccCcceeeccccccccceeeecchhhhh-cchHHHH--------------
Confidence 88888888877655321 335555555555553322222335555555555555 3444443
Q ss_pred CcccCCCCCCccccCCcccEEEeccCcccccCCCCCCCcceeeCcCCcCccCCCcchhcccCceEEEEecCCcccccCCh
Q 047927 562 NLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIPPLPPNAAYVDYSGNNFTSSIPVDIGSFMSLSIFFSFSKNSLTGVIPE 641 (1005)
Q Consensus 562 n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ls~n~~~~~~p~~~~~~~~~L~~L~l~~n~l~~~~p~ 641 (1005)
.|.+|+.++..+|++. .+|..++ ..++|+++.+..|.+. .+|.
T Consensus 262 -------------~~~nle~l~~n~N~l~----------------------~lp~ri~-~~~~L~~l~~~~nel~-yip~ 304 (1081)
T KOG0618|consen 262 -------------ACANLEALNANHNRLV----------------------ALPLRIS-RITSLVSLSAAYNELE-YIPP 304 (1081)
T ss_pred -------------hcccceEecccchhHH----------------------hhHHHHh-hhhhHHHHHhhhhhhh-hCCC
Confidence 3345555555555553 1122222 1333444444444444 3444
Q ss_pred hhhccCCCCeEEccCccccccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCccEEeCCCCeecccCcccccCCC
Q 047927 642 SICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCS 721 (1005)
Q Consensus 642 ~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 721 (1005)
.....++|++|||..|++. ..|+.+......+|..|+.+.|++.....-.-...+.|+.|++.+|.++...-..+.+..
T Consensus 305 ~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~ 383 (1081)
T KOG0618|consen 305 FLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFK 383 (1081)
T ss_pred cccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhcccc
Confidence 5555666666666666665 444433332222355555555655544322223344556666666666655444555555
Q ss_pred CCCEEECCCCcCCCCcchhhhcCCCCcEEecCCCcCCcccCCCCCCCCCCCccEEEccCCcccccCChHHHhhhhhhhhc
Q 047927 722 VLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVD 801 (1005)
Q Consensus 722 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~~~~~~p~~~~~~l~~~~~~ 801 (1005)
+|+.|+|++|++.......+.++..|+.|+|+||+++. +|.+..
T Consensus 384 hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~---------------------------Lp~tva--------- 427 (1081)
T KOG0618|consen 384 HLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTT---------------------------LPDTVA--------- 427 (1081)
T ss_pred ceeeeeecccccccCCHHHHhchHHhHHHhcccchhhh---------------------------hhHHHH---------
Confidence 66666666666554333445555555555555555432 221111
Q ss_pred cCCchhhhchhhheecccccccccccEEEEEcchHHHHHHhcccceEEECCCCeeeccCcccccCCCCCCEEECCCCcCc
Q 047927 802 EGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALT 881 (1005)
Q Consensus 802 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~ 881 (1005)
.+..|..|...+|++. ..| ++..++.|+++|+|+|+|+
T Consensus 428 ----------------------------------------~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~ 465 (1081)
T KOG0618|consen 428 ----------------------------------------NLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLS 465 (1081)
T ss_pred ----------------------------------------hhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhh
Confidence 2233444555555555 455 6777888888888888877
Q ss_pred c-cCchhhhcCCCCCEEeCCCCcCcccCcccccCCCCCCeEEccCC
Q 047927 882 G-SIPSLIGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLNLSYN 926 (1005)
Q Consensus 882 g-~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N 926 (1005)
- .+|... .-++|++|||++|.=...--..|..+..+..+++.-|
T Consensus 466 ~~~l~~~~-p~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 466 EVTLPEAL-PSPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred hhhhhhhC-CCcccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence 4 333332 2278888888888743344455666677777777766
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.96 E-value=3.9e-32 Score=302.01 Aligned_cols=417 Identities=27% Similarity=0.279 Sum_probs=250.3
Q ss_pred CCcEEECCCCCCCCCcchhccCCCCCcEEEccCCCCCccCccccCCCCCCCEEeCCCCCCCCCCCCcccCCCCCcEEEcc
Q 047927 214 SLSVIRLDMNDLYSPVPEFLADFSNLTSLYLSSCGLHGAFPEKILQLPTLETLDLSYNELLQGSLPDFHQNLSLETLILS 293 (1005)
Q Consensus 214 ~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~L~~L~L~ 293 (1005)
.++.|+++.|.+....-+.+.+.-+|+.|++++|.+. .+|..+..+.+|+.|.++.|.+...+ .....+.+|+++.|.
T Consensus 22 ~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~~vp-~s~~~~~~l~~lnL~ 99 (1081)
T KOG0618|consen 22 ALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIRSVP-SSCSNMRNLQYLNLK 99 (1081)
T ss_pred HHHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHhhCc-hhhhhhhcchhheec
Confidence 3555566555443322223333344666777666665 56666666667777777766654433 334446667777776
Q ss_pred cccccccCchhhccCCCCCEEeecCCccCCCCCccCCCCCCCcEEECcCCcCccCCCcccccCcccEEECCCCcCcCCCC
Q 047927 294 ATNFSGILPDSIKNLKNLSRVEFYLCNFNGPIPTSMSDLSQLVYLDMSFNHFSGPIPSLHMFRNLAYLDLSYNIFTGGIS 373 (1005)
Q Consensus 294 ~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 373 (1005)
+|.+. ..|..+..+++|+.|+++.|.+. .+|..+..+..+..+..++|......+. ..++.+++..|.+.+.+.
T Consensus 100 ~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~lg~----~~ik~~~l~~n~l~~~~~ 173 (1081)
T KOG0618|consen 100 NNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQRLGQ----TSIKKLDLRLNVLGGSFL 173 (1081)
T ss_pred cchhh-cCchhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhhhhcc----ccchhhhhhhhhcccchh
Confidence 66655 66777777777777887777775 5666677777777777777722111111 126666666666666555
Q ss_pred cccccccccccEEEcCCCcCCCccCccCCCCCCCCEEeCcCcccccccccccccccccCCEEeCCCCccCCCCCccccCc
Q 047927 374 SIGWEQLLNLFHVDLSHNNLGGSIPQSLFELPMVQHLLLADNQFDGHVTEISNASSSLLDTLDLSDNNLEGPIPLSFFEL 453 (1005)
Q Consensus 374 ~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l 453 (1005)
.. +..++. .+++++|.+. ...+..++.|+.+....|++.... ..-++++.|+.++|.++...+. ..-
T Consensus 174 ~~-i~~l~~--~ldLr~N~~~---~~dls~~~~l~~l~c~rn~ls~l~-----~~g~~l~~L~a~~n~l~~~~~~--p~p 240 (1081)
T KOG0618|consen 174 ID-IYNLTH--QLDLRYNEME---VLDLSNLANLEVLHCERNQLSELE-----ISGPSLTALYADHNPLTTLDVH--PVP 240 (1081)
T ss_pred cc-hhhhhe--eeecccchhh---hhhhhhccchhhhhhhhcccceEE-----ecCcchheeeeccCcceeeccc--ccc
Confidence 44 444444 5777777765 234556666677666666554211 1234577888888877732221 123
Q ss_pred CCCcEEECCCCcceeccchhHHHhcCCCCeEeccCCeeeEecCCcccccCcccceEEcCCccCcCCCC-CCCCCceeEEE
Q 047927 454 KNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRLAVVAGSSVYCFPPLLTTLSLASCKLSAIPN-LRKQTKLYHLD 532 (1005)
Q Consensus 454 ~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~l~~-l~~l~~L~~L~ 532 (1005)
.+|+.++++.|+++ .+| +++..+.+|+.++..+|.+..++...+ ...+|+.|.+..|.+..+|. +...+.|+.|+
T Consensus 241 ~nl~~~dis~n~l~-~lp-~wi~~~~nle~l~~n~N~l~~lp~ri~--~~~~L~~l~~~~nel~yip~~le~~~sL~tLd 316 (1081)
T KOG0618|consen 241 LNLQYLDISHNNLS-NLP-EWIGACANLEALNANHNRLVALPLRIS--RITSLVSLSAAYNELEYIPPFLEGLKSLRTLD 316 (1081)
T ss_pred ccceeeecchhhhh-cch-HHHHhcccceEecccchhHHhhHHHHh--hhhhHHHHHhhhhhhhhCCCcccccceeeeee
Confidence 57888888888887 566 778888888888888888866654432 23458888999999999988 66799999999
Q ss_pred CcCCcCCCCCChhhhhhcCCcccEEeCCCCcccCCCCCCccccCCcccEEEeccCcccccCCC---CCCCcceeeCcCCc
Q 047927 533 LSDNQISGEIPNWLWKIGKDSFNHLNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIPP---LPPNAAYVDYSGNN 609 (1005)
Q Consensus 533 Ls~n~l~~~~p~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~l~~L~ls~n~ 609 (1005)
|..|++. ..|+.+......++..++.+.|++...+.. .-...+.|+.|.+.+|.++....+ ....++.|++++|+
T Consensus 317 L~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~-~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNr 394 (1081)
T KOG0618|consen 317 LQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSY-EENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNR 394 (1081)
T ss_pred ehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccc-cchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccc
Confidence 9999997 777777666666677888888887776421 112235567777777777654322 12234444444444
Q ss_pred CccCCCcchhcccCceEEEEecCCcccccCChhhhccCCCCeEEccCccc
Q 047927 610 FTSSIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYL 659 (1005)
Q Consensus 610 ~~~~~p~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l 659 (1005)
+. ++|......+..|+.|++|+|+++ .+|..+..+..|++|...+|++
T Consensus 395 L~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l 442 (1081)
T KOG0618|consen 395 LN-SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQL 442 (1081)
T ss_pred cc-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCce
Confidence 33 333333333333333333333333 2233333333333333333333
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.96 E-value=8.8e-32 Score=284.77 Aligned_cols=362 Identities=25% Similarity=0.374 Sum_probs=205.0
Q ss_pred cCCEEeCCCCccC-CCCCccccCcCCCcEEECCCCcceeccchhHHHhcCCCCeEeccCCeeeEecCCcccccCcccceE
Q 047927 431 LLDTLDLSDNNLE-GPIPLSFFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRLAVVAGSSVYCFPPLLTTL 509 (1005)
Q Consensus 431 ~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L 509 (1005)
-.+-+|+++|.++ +..|..+..+++++.|.|...++. .+| +.++.+.+|++|.+++|++..+.+.
T Consensus 8 FVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vP-eEL~~lqkLEHLs~~HN~L~~vhGE------------ 73 (1255)
T KOG0444|consen 8 FVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVP-EELSRLQKLEHLSMAHNQLISVHGE------------ 73 (1255)
T ss_pred eeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hCh-HHHHHHhhhhhhhhhhhhhHhhhhh------------
Confidence 3455677777777 457888888999999999998886 555 5688888888888888888766543
Q ss_pred EcCCccCcCCCCCCCCCceeEEECcCCcCCC-CCChhhhhhcCCcccEEeCCCCcccCCCCCCccccCCcccEEEeccCc
Q 047927 510 SLASCKLSAIPNLRKQTKLYHLDLSDNQISG-EIPNWLWKIGKDSFNHLNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQ 588 (1005)
Q Consensus 510 ~L~~n~l~~l~~l~~l~~L~~L~Ls~n~l~~-~~p~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~ 588 (1005)
+..++.|+.+++..|++.. -+|..++.+ ..|..||||+|+++..+. .+..-.++-+|++++|+
T Consensus 74 ------------Ls~Lp~LRsv~~R~N~LKnsGiP~diF~l--~dLt~lDLShNqL~EvP~--~LE~AKn~iVLNLS~N~ 137 (1255)
T KOG0444|consen 74 ------------LSDLPRLRSVIVRDNNLKNSGIPTDIFRL--KDLTILDLSHNQLREVPT--NLEYAKNSIVLNLSYNN 137 (1255)
T ss_pred ------------hccchhhHHHhhhccccccCCCCchhccc--ccceeeecchhhhhhcch--hhhhhcCcEEEEcccCc
Confidence 4444555555555555432 234444332 234444444444444322 12222455556666666
Q ss_pred ccccCCCCCCCcceeeCcCCcCccCCCcchhcccCceEEEEecCCcccccCChhhhccCCCCeEEccCccccccCCchhh
Q 047927 589 IQGKIPPLPPNAAYVDYSGNNFTSSIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLI 668 (1005)
Q Consensus 589 l~~~~~~~~~~l~~L~ls~n~~~~~~p~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~ 668 (1005)
+. .||..++-.++.|-+|++++|++. .+|+.+..+..|++|+|++|.+.
T Consensus 138 Ie----------------------tIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~-------- 186 (1255)
T KOG0444|consen 138 IE----------------------TIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLN-------- 186 (1255)
T ss_pred cc----------------------cCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhh--------
Confidence 54 344444444445555555555554 44555566666666666666554
Q ss_pred hcCcccccEEECCCCcCCccccCccCCCCCccEEeCCCCeec-ccCcccccCCCCCCEEECCCCcCCCCcchhhhcCCCC
Q 047927 669 NMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLE-GMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRL 747 (1005)
Q Consensus 669 ~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 747 (1005)
-.--..++.+++|+.|++++.+-+ .-+|.++..+.+|..+|+|.|.+. ..|+.+-++.+|
T Consensus 187 ------------------hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~L 247 (1255)
T KOG0444|consen 187 ------------------HFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNL 247 (1255)
T ss_pred ------------------HHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhh
Confidence 222223334444444554444322 124444555555555555555544 345555555555
Q ss_pred cEEecCCCcCCcccCCCCCCCCCCCccEEEccCCcccccCChHHHhhhhhhhhccCCchhhhchhhheeccccccccccc
Q 047927 748 HVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDA 827 (1005)
Q Consensus 748 ~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 827 (1005)
+.|+|++|+++.. ....+.+.+|+.|++|+|+++ .+|....
T Consensus 248 rrLNLS~N~iteL---~~~~~~W~~lEtLNlSrNQLt-~LP~avc----------------------------------- 288 (1255)
T KOG0444|consen 248 RRLNLSGNKITEL---NMTEGEWENLETLNLSRNQLT-VLPDAVC----------------------------------- 288 (1255)
T ss_pred heeccCcCceeee---eccHHHHhhhhhhccccchhc-cchHHHh-----------------------------------
Confidence 5555555554421 223334445555555555554 2332221
Q ss_pred EEEEEcchHHHHHHhcccceEEECCCCeee-ccCcccccCCCCCCEEECCCCcCcccCchhhhcCCCCCEEeCCCCcCcc
Q 047927 828 ITVTIKGLEMKLAKILNIFTSIDFSRNNFE-GPIPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSG 906 (1005)
Q Consensus 828 ~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~-g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~~ 906 (1005)
.++.|+.|.+.+|+++ .-||..||.|..|+++..++|.+. ..|+.+..+..|+.|.|++|++-
T Consensus 289 --------------KL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi- 352 (1255)
T KOG0444|consen 289 --------------KLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI- 352 (1255)
T ss_pred --------------hhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-
Confidence 1233344444444443 236777777777777777777777 67777777777777777777776
Q ss_pred cCcccccCCCCCCeEEccCCc
Q 047927 907 TIPAQLASLNFLSVLNLSYNH 927 (1005)
Q Consensus 907 ~ip~~l~~l~~L~~L~ls~N~ 927 (1005)
..|+.+.-|+.|++||+..|+
T Consensus 353 TLPeaIHlL~~l~vLDlreNp 373 (1255)
T KOG0444|consen 353 TLPEAIHLLPDLKVLDLRENP 373 (1255)
T ss_pred echhhhhhcCCcceeeccCCc
Confidence 567777777777777777774
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.95 E-value=7e-31 Score=277.99 Aligned_cols=368 Identities=26% Similarity=0.358 Sum_probs=237.7
Q ss_pred cccccceeecCCccCCCCCCCCcccCCCCCcEEEcccCCCcCCCcccccCCCCCcEEeCCCcccccCccccCCCChhhhh
Q 047927 78 SLKYLQSLNLAFNMFNATEIPSGLGNLTNLTTLNLSNAGFAGQIPIQVSGMTRLVTLDLSGMYFVRAPLKLENPNLSGLL 157 (1005)
Q Consensus 78 ~l~~L~~L~Ls~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~l 157 (1005)
-++..|-.|+++|.++|..+|+.+..++.++.|.|...++. .+|..++.|.+|+||.+++|++..+ .+.+
T Consensus 5 VLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~~v---------hGEL 74 (1255)
T KOG0444|consen 5 VLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLISV---------HGEL 74 (1255)
T ss_pred ccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhHhh---------hhhh
Confidence 35566777777788877778888888888888888888775 7888888888888888888876443 3447
Q ss_pred hcCccCceeecCCccCCCchhhHHHHHhccCCCccEEEccCCCCCCCCCccccCCCCCcEEECCCCCCCCCcchhccCCC
Q 047927 158 QNLAELRELYLDGVNISAPGIEWCQALSSLVPKLQVLSLSGCFLSGPVDPSLSNLRSLSVIRLDMNDLYSPVPEFLADFS 237 (1005)
Q Consensus 158 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~ 237 (1005)
..++.|+.+.++.|++...++. ..+..+ ..|+.|||++|++. +.|..+..-+++-+|+|++|++.......|.+++
T Consensus 75 s~Lp~LRsv~~R~N~LKnsGiP--~diF~l-~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLt 150 (1255)
T KOG0444|consen 75 SDLPRLRSVIVRDNNLKNSGIP--TDIFRL-KDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLT 150 (1255)
T ss_pred ccchhhHHHhhhccccccCCCC--chhccc-ccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhH
Confidence 7777888888877766544332 123333 67888888888877 4677788888888888888888665555677788
Q ss_pred CCcEEEccCCCCCccCccccCCCCCCCEEeCCCCCCCCCCCCcccCCCCCcEEEccccccc-ccCchhhccCCCCCEEee
Q 047927 238 NLTSLYLSSCGLHGAFPEKILQLPTLETLDLSYNELLQGSLPDFHQNLSLETLILSATNFS-GILPDSIKNLKNLSRVEF 316 (1005)
Q Consensus 238 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~l 316 (1005)
.|-.|||++|++. .+|+.+..+.+|++|+|++|++....+..+..+++|++|.+++.+-+ ..+|.++..+.+|..+++
T Consensus 151 DLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDl 229 (1255)
T KOG0444|consen 151 DLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDL 229 (1255)
T ss_pred hHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccc
Confidence 8888888888887 66777888888888888888776555556666667777777766543 345666666666666666
Q ss_pred cCCccCCCCCccCCCCCCCcEEECcCCcCccCCCcccccCcccEEECCCCcCcCCCCcccccccccccEEEcCCCcCCCc
Q 047927 317 YLCNFNGPIPTSMSDLSQLVYLDMSFNHFSGPIPSLHMFRNLAYLDLSYNIFTGGISSIGWEQLLNLFHVDLSHNNLGGS 396 (1005)
Q Consensus 317 ~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 396 (1005)
+.|++. ..|+.+.++++|+.|++++|.++..--. .+...+|+.|+++.|+++ .
T Consensus 230 S~N~Lp-~vPecly~l~~LrrLNLS~N~iteL~~~-------------------------~~~W~~lEtLNlSrNQLt-~ 282 (1255)
T KOG0444|consen 230 SENNLP-IVPECLYKLRNLRRLNLSGNKITELNMT-------------------------EGEWENLETLNLSRNQLT-V 282 (1255)
T ss_pred cccCCC-cchHHHhhhhhhheeccCcCceeeeecc-------------------------HHHHhhhhhhccccchhc-c
Confidence 666655 4566666666666666666666532221 223345555555666555 5
Q ss_pred cCccCCCCCCCCEEeCcCcccccccccccccccccCCEEeCCCCccCCCCCccccCcCCCcEEECCCCcceeccchhHHH
Q 047927 397 IPQSLFELPMVQHLLLADNQFDGHVTEISNASSSLLDTLDLSDNNLEGPIPLSFFELKNLKILLLSSNKFVGTIELDAIQ 476 (1005)
Q Consensus 397 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~ 476 (1005)
+|..+..+++|+.|...+|+++-.........+..|+.+..++|.+. ..|..++.|..|+.|.|+.|++. ++| +++.
T Consensus 283 LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLP-eaIH 359 (1255)
T KOG0444|consen 283 LPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLP-EAIH 359 (1255)
T ss_pred chHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-ech-hhhh
Confidence 56666666666666666655442211111112233344444444443 45555555555555555555554 333 3455
Q ss_pred hcCCCCeEeccCCe
Q 047927 477 RLRNLFRLDLSYNR 490 (1005)
Q Consensus 477 ~l~~L~~L~l~~n~ 490 (1005)
-++.|+.||+..|.
T Consensus 360 lL~~l~vLDlreNp 373 (1255)
T KOG0444|consen 360 LLPDLKVLDLRENP 373 (1255)
T ss_pred hcCCcceeeccCCc
Confidence 55555555555553
No 11
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.91 E-value=1.3e-27 Score=241.40 Aligned_cols=132 Identities=27% Similarity=0.299 Sum_probs=94.3
Q ss_pred cccCCEEeCCCCccCCCCCccccCcCCCcEEECCCCcceeccchhHHHhcCCCCeEeccC-CeeeEecCCcccccCcccc
Q 047927 429 SSLLDTLDLSDNNLEGPIPLSFFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSY-NRLAVVAGSSVYCFPPLLT 507 (1005)
Q Consensus 429 ~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~-n~l~~~~~~~~~~~~~~L~ 507 (1005)
++...+++|..|.|+...+.+|..+++|+.|+|++|.|+ .|.+++|+++++|.+|.+.+ |+|+.++...|.. ...++
T Consensus 66 P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is-~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~g-L~slq 143 (498)
T KOG4237|consen 66 PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNIS-FIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGG-LSSLQ 143 (498)
T ss_pred CCcceEEEeccCCcccCChhhccchhhhceecccccchh-hcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhh-HHHHH
Confidence 455677888888888777888888888888888888887 77888888888888777766 7888887766443 34477
Q ss_pred eEEcCCccCcCCCC--CCCCCceeEEECcCCcCCCCCCh-hhhhhcCCcccEEeCCCCccc
Q 047927 508 TLSLASCKLSAIPN--LRKQTKLYHLDLSDNQISGEIPN-WLWKIGKDSFNHLNLSHNLLV 565 (1005)
Q Consensus 508 ~L~L~~n~l~~l~~--l~~l~~L~~L~Ls~n~l~~~~p~-~~~~~~~~~L~~L~L~~n~l~ 565 (1005)
.|.+.-|++..++. +..++++..|.+.+|.+. .++. .+. +..+++.+.+..|.+.
T Consensus 144 rLllNan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~--~l~~i~tlhlA~np~i 201 (498)
T KOG4237|consen 144 RLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQ--GLAAIKTLHLAQNPFI 201 (498)
T ss_pred HHhcChhhhcchhHHHHHHhhhcchhcccchhhh-hhcccccc--chhccchHhhhcCccc
Confidence 77777777777765 777778888888887776 3333 222 2344556666655543
No 12
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.89 E-value=1.1e-25 Score=227.64 Aligned_cols=416 Identities=24% Similarity=0.279 Sum_probs=258.3
Q ss_pred eCCCCccCCCCCccccCcCCCcEEECCCCcceeccchhHHHhcCCCCeEeccCCeeeEecCCcccccCcccceEEcCCcc
Q 047927 436 DLSDNNLEGPIPLSFFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRLAVVAGSSVYCFPPLLTTLSLASCK 515 (1005)
Q Consensus 436 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~ 515 (1005)
+-++-.++ .+|..+. +.-..+.|..|+|+ .+|..+|+.+++|++|+|++|.|+.+...+|.+....++-+...+|+
T Consensus 52 dCr~~GL~-eVP~~LP--~~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~Nk 127 (498)
T KOG4237|consen 52 DCRGKGLT-EVPANLP--PETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNK 127 (498)
T ss_pred EccCCCcc-cCcccCC--CcceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCc
Confidence 33333444 4555443 45678999999998 89999999999999999999999999999887776655555666699
Q ss_pred CcCCCC--CCCCCceeEEECcCCcCCCCCChhhhhhcCCcccEEeCCCCcccCCCCCCccccCCcccEEEeccCcccccC
Q 047927 516 LSAIPN--LRKQTKLYHLDLSDNQISGEIPNWLWKIGKDSFNHLNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQGKI 593 (1005)
Q Consensus 516 l~~l~~--l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 593 (1005)
|+++|. |.++..|+.|.+.-|++...-.+.++++ +++..|.+..|.+..+... .+..+..++.+.+..|++...
T Consensus 128 I~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL--~~l~lLslyDn~~q~i~~~-tf~~l~~i~tlhlA~np~icd- 203 (498)
T KOG4237|consen 128 ITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDL--PSLSLLSLYDNKIQSICKG-TFQGLAAIKTLHLAQNPFICD- 203 (498)
T ss_pred hhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHh--hhcchhcccchhhhhhccc-cccchhccchHhhhcCccccc-
Confidence 999998 9999999999999999998777777765 5578888888888877543 466677888888888775311
Q ss_pred CCCCCCccee--eCcCCcCccCCCcchhcccCceEEEEecCCcccccCChhhhc-cCCCCeEEccCccccccCC-chhhh
Q 047927 594 PPLPPNAAYV--DYSGNNFTSSIPVDIGSFMSLSIFFSFSKNSLTGVIPESICN-ATNLLVLDLSYNYLSGMIP-TCLIN 669 (1005)
Q Consensus 594 ~~~~~~l~~L--~ls~n~~~~~~p~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~-l~~L~~L~Ls~N~l~~~~p-~~~~~ 669 (1005)
.+++.+ ++..+ |..++ .........+.+.++...-+..|.. +..+..-..+.+...+..| .+|..
T Consensus 204 ----CnL~wla~~~a~~------~iets-garc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~ 272 (498)
T KOG4237|consen 204 ----CNLPWLADDLAMN------PIETS-GARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKK 272 (498)
T ss_pred ----cccchhhhHHhhc------hhhcc-cceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhh
Confidence 111111 00111 11110 1111122223333333232222221 1122221222332333333 45666
Q ss_pred cCcccccEEECCCCcCCccccCccCCCCCccEEeCCCCeecccCcccccCCCCCCEEECCCCcCCCCcchhhhcCCCCcE
Q 047927 670 MSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHV 749 (1005)
Q Consensus 670 l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 749 (1005)
++ +|+.|+|++|+++++.+.+|.+..++++|+|..|++..+....|.++..|+.|+|.+|+|+...|..|..+.+|.+
T Consensus 273 L~--~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~ 350 (498)
T KOG4237|consen 273 LP--NLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLST 350 (498)
T ss_pred cc--cceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeee
Confidence 76 7888888888888887888888888888888888887776777778888888888888888777777777777777
Q ss_pred EecCCCcCCcccCCCCCCCCCCCccEEEccCCcccccCChHHHhhhhhhhhccCC-------------------------
Q 047927 750 LILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGR------------------------- 804 (1005)
Q Consensus 750 L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~~~~~~p~~~~~~l~~~~~~~~~------------------------- 804 (1005)
|+|-+|.+.... --.|+..|-.-......
T Consensus 351 l~l~~Np~~CnC--------------------------~l~wl~~Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~ 404 (498)
T KOG4237|consen 351 LNLLSNPFNCNC--------------------------RLAWLGEWLRKKSVVGNPRCQSPGFVRQIPISDVAFGDFRCG 404 (498)
T ss_pred eehccCcccCcc--------------------------chHHHHHHHhhCCCCCCCCCCCCchhccccchhccccccccC
Confidence 777777765432 22333333111000000
Q ss_pred chhhhchhhheecccccccccccEEEEEcchHHHHHHhcccceEEECCCCeeeccCcccccCCCCCCEEECCCCcCcccC
Q 047927 805 SQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSI 884 (1005)
Q Consensus 805 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~i 884 (1005)
..++..+.+....+.+.......+. -|++.+. .+|..+- ...++|++.+|.++ .+
T Consensus 405 ~~ee~~~~~s~~cP~~c~c~~tVvR---------------------cSnk~lk-~lp~~iP--~d~telyl~gn~~~-~v 459 (498)
T KOG4237|consen 405 GPEELGCLTSSPCPPPCTCLDTVVR---------------------CSNKLLK-LLPRGIP--VDVTELYLDGNAIT-SV 459 (498)
T ss_pred CccccCCCCCCCCCCCcchhhhhHh---------------------hcccchh-hcCCCCC--chhHHHhcccchhc-cc
Confidence 0011111111111111111111112 2333332 3443332 34566778888887 67
Q ss_pred chhhhcCCCCCEEeCCCCcCcccCcccccCCCCCCeEEccCC
Q 047927 885 PSLIGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLNLSYN 926 (1005)
Q Consensus 885 p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N 926 (1005)
|.+ .+++| .+|||+|+++..--..|.++++|.+|-+|||
T Consensus 460 p~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 460 PDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred CHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence 776 66777 7888888887766777888888888888876
No 13
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.87 E-value=6.1e-21 Score=240.86 Aligned_cols=341 Identities=19% Similarity=0.247 Sum_probs=221.3
Q ss_pred cchhHHHhcCCCCeEeccCCeee------EecCCcccccCcccceEEcCCccCcCCCCCCCCCceeEEECcCCcCCCCCC
Q 047927 470 IELDAIQRLRNLFRLDLSYNRLA------VVAGSSVYCFPPLLTTLSLASCKLSAIPNLRKQTKLYHLDLSDNQISGEIP 543 (1005)
Q Consensus 470 ~~~~~l~~l~~L~~L~l~~n~l~------~~~~~~~~~~~~~L~~L~L~~n~l~~l~~l~~l~~L~~L~Ls~n~l~~~~p 543 (1005)
+...+|.++++|+.|.+..+... ......+..+++.|+.|.+.++.++.+|.-....+|++|++++|++. .++
T Consensus 549 i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~-~L~ 627 (1153)
T PLN03210 549 IHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLE-KLW 627 (1153)
T ss_pred ecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCcccc-ccc
Confidence 45567888888888888655321 11112334455667777777777777776335567777777777765 333
Q ss_pred hhhhhhcCCcccEEeCCCCc-ccCCCCCCccccCCcccEEEeccCcccccCCCCCCCcceeeCcCCcCccCCCcchhccc
Q 047927 544 NWLWKIGKDSFNHLNLSHNL-LVSLEQPYSISDLTSLSVLDLHSNQIQGKIPPLPPNAAYVDYSGNNFTSSIPVDIGSFM 622 (1005)
Q Consensus 544 ~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ls~n~~~~~~p~~~~~~~ 622 (1005)
..+. ....|+.++++++. +..++ .+..+++|+.|++++|. ....+|..+. .+
T Consensus 628 ~~~~--~l~~Lk~L~Ls~~~~l~~ip---~ls~l~~Le~L~L~~c~---------------------~L~~lp~si~-~L 680 (1153)
T PLN03210 628 DGVH--SLTGLRNIDLRGSKNLKEIP---DLSMATNLETLKLSDCS---------------------SLVELPSSIQ-YL 680 (1153)
T ss_pred cccc--cCCCCCEEECCCCCCcCcCC---ccccCCcccEEEecCCC---------------------Cccccchhhh-cc
Confidence 3221 22344555554432 22222 13334444444444443 3334454444 36
Q ss_pred CceEEEEecCCcccccCChhhhccCCCCeEEccCccccccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCccEE
Q 047927 623 SLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTL 702 (1005)
Q Consensus 623 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 702 (1005)
..|+.|++++|...+.+|..+ ++++|+.|++++|...+.+|.. .. +|+.|++++|.+.. +|..+ .+++|++|
T Consensus 681 ~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~--nL~~L~L~~n~i~~-lP~~~-~l~~L~~L 752 (1153)
T PLN03210 681 NKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---ST--NISWLDLDETAIEE-FPSNL-RLENLDEL 752 (1153)
T ss_pred CCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cC--CcCeeecCCCcccc-ccccc-cccccccc
Confidence 778888888876666777665 6888888888888765555543 12 78888888888764 34433 46778888
Q ss_pred eCCCCeec-------ccCcccccCCCCCCEEECCCCcCCCCcchhhhcCCCCcEEecCCCcCCcccCCCCCCCCCCCccE
Q 047927 703 DLNGNQLE-------GMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQI 775 (1005)
Q Consensus 703 ~L~~N~l~-------~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~ 775 (1005)
++.++... ...+..+...++|+.|++++|+..+.+|.+++++++|+.|++++|...+.+ |... .+++|+.
T Consensus 753 ~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~L--P~~~-~L~sL~~ 829 (1153)
T PLN03210 753 ILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETL--PTGI-NLESLES 829 (1153)
T ss_pred cccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCee--CCCC-CccccCE
Confidence 88764422 112222334568888888888877788888888888888888887655554 5544 6788888
Q ss_pred EEccCCcccccCChHHHhhhhhhhhccCCchhhhchhhheecccccccccccEEEEEcchHHHHHHhcccceEEECCCCe
Q 047927 776 IDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNN 855 (1005)
Q Consensus 776 L~ls~N~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~ 855 (1005)
|++++|.....+|. ..++++.|+|++|.
T Consensus 830 L~Ls~c~~L~~~p~----------------------------------------------------~~~nL~~L~Ls~n~ 857 (1153)
T PLN03210 830 LDLSGCSRLRTFPD----------------------------------------------------ISTNISDLNLSRTG 857 (1153)
T ss_pred EECCCCCccccccc----------------------------------------------------cccccCEeECCCCC
Confidence 88888765444442 13457788888888
Q ss_pred eeccCcccccCCCCCCEEECCC-CcCcccCchhhhcCCCCCEEeCCCCc
Q 047927 856 FEGPIPEEMGLLQSLCALNLSH-NALTGSIPSLIGNLREIESLDLSMNN 903 (1005)
Q Consensus 856 l~g~ip~~~~~l~~L~~L~Ls~-N~l~g~ip~~~~~l~~L~~LdLs~N~ 903 (1005)
++ .+|..++.+++|++|+|++ |+++ .+|..+..+++|+.|++++|.
T Consensus 858 i~-~iP~si~~l~~L~~L~L~~C~~L~-~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 858 IE-EVPWWIEKFSNLSFLDMNGCNNLQ-RVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred Cc-cChHHHhcCCCCCEEECCCCCCcC-ccCcccccccCCCeeecCCCc
Confidence 87 5788888888888888887 4455 577778888888888888874
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.86 E-value=2.7e-21 Score=224.74 Aligned_cols=262 Identities=27% Similarity=0.296 Sum_probs=158.2
Q ss_pred ccEEeCCCCcccCCCCCCccccCCcccEEEeccCcccccCCCCCCCcceeeCcCCcCccCCCcchhcccCceEEEEecCC
Q 047927 554 FNHLNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIPPLPPNAAYVDYSGNNFTSSIPVDIGSFMSLSIFFSFSKN 633 (1005)
Q Consensus 554 L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ls~n~~~~~~p~~~~~~~~~L~~L~l~~n 633 (1005)
-..|+++.+.++.++... . ++|+.|++.+|+++. +|..+ +.|++|++++|
T Consensus 203 ~~~LdLs~~~LtsLP~~l--~--~~L~~L~L~~N~Lt~-LP~lp-------------------------~~Lk~LdLs~N 252 (788)
T PRK15387 203 NAVLNVGESGLTTLPDCL--P--AHITTLVIPDNNLTS-LPALP-------------------------PELRTLEVSGN 252 (788)
T ss_pred CcEEEcCCCCCCcCCcch--h--cCCCEEEccCCcCCC-CCCCC-------------------------CCCcEEEecCC
Confidence 445566666665554321 1 245566666665552 34333 44555555555
Q ss_pred cccccCChhhhccCCCCeEEccCccccccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCccEEeCCCCeecccC
Q 047927 634 SLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMV 713 (1005)
Q Consensus 634 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 713 (1005)
+++. +|.. .++|+.|++++|.++ .+|... . +|+.|++++|+++.. |. ..++|+.|++++|++++ +
T Consensus 253 ~Lts-LP~l---p~sL~~L~Ls~N~L~-~Lp~lp---~--~L~~L~Ls~N~Lt~L-P~---~p~~L~~LdLS~N~L~~-L 317 (788)
T PRK15387 253 QLTS-LPVL---PPGLLELSIFSNPLT-HLPALP---S--GLCKLWIFGNQLTSL-PV---LPPGLQELSVSDNQLAS-L 317 (788)
T ss_pred ccCc-ccCc---ccccceeeccCCchh-hhhhch---h--hcCEEECcCCccccc-cc---cccccceeECCCCcccc-C
Confidence 5553 2322 345666666666665 333321 1 566666666666643 22 12456677777776664 3
Q ss_pred cccccCCCCCCEEECCCCcCCCCcchhhhcCCCCcEEecCCCcCCcccCCCCCCCCCCCccEEEccCCcccccCChHHHh
Q 047927 714 PKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLL 793 (1005)
Q Consensus 714 p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~~~~~~p~~~~~ 793 (1005)
|.. ..+|+.|++++|++++ +|.. ..+|+.|+|++|++++. |.. .++|+.|++++|++++ +|.
T Consensus 318 p~l---p~~L~~L~Ls~N~L~~-LP~l---p~~Lq~LdLS~N~Ls~L---P~l---p~~L~~L~Ls~N~L~~-LP~---- 379 (788)
T PRK15387 318 PAL---PSELCKLWAYNNQLTS-LPTL---PSGLQELSVSDNQLASL---PTL---PSELYKLWAYNNRLTS-LPA---- 379 (788)
T ss_pred CCC---cccccccccccCcccc-cccc---ccccceEecCCCccCCC---CCC---Ccccceehhhcccccc-Ccc----
Confidence 332 1346666677777664 3431 13566777777776642 322 2456667777777663 442
Q ss_pred hhhhhhhccCCchhhhchhhheecccccccccccEEEEEcchHHHHHHhcccceEEECCCCeeeccCcccccCCCCCCEE
Q 047927 794 NLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSLCAL 873 (1005)
Q Consensus 794 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L 873 (1005)
....|+.|++++|+|++ +|... ++|+.|
T Consensus 380 ------------------------------------------------l~~~L~~LdLs~N~Lt~-LP~l~---s~L~~L 407 (788)
T PRK15387 380 ------------------------------------------------LPSGLKELIVSGNRLTS-LPVLP---SELKEL 407 (788)
T ss_pred ------------------------------------------------cccccceEEecCCcccC-CCCcc---cCCCEE
Confidence 12346778888888884 56433 568888
Q ss_pred ECCCCcCcccCchhhhcCCCCCEEeCCCCcCcccCcccccCCCCCCeEEccCCcccccCCCC
Q 047927 874 NLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLNLSYNHLVGRIPTS 935 (1005)
Q Consensus 874 ~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~ 935 (1005)
++++|+|++ +|... .+|+.|+|++|+|+ .+|..+.+++.|+.|+|++|+|+|.+|..
T Consensus 408 dLS~N~Lss-IP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~ 464 (788)
T PRK15387 408 MVSGNRLTS-LPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQA 464 (788)
T ss_pred EccCCcCCC-CCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHH
Confidence 888888884 67543 46778888888887 67888888888888888888888887753
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.86 E-value=3.1e-21 Score=224.24 Aligned_cols=66 Identities=23% Similarity=0.286 Sum_probs=48.1
Q ss_pred cceEEECCCCeeeccCcccccCCCCCCEEECCCCcCcccCchhhhcCCCCCEEeCCCCcCcccCcccccCC
Q 047927 845 IFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLASL 915 (1005)
Q Consensus 845 ~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l 915 (1005)
.|+.|++++|++++ +|... .+|+.|+|++|+|+ .+|..++++++|+.|+|++|.|+|.+|..+..+
T Consensus 403 ~L~~LdLS~N~Lss-IP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~l 468 (788)
T PRK15387 403 ELKELMVSGNRLTS-LPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREI 468 (788)
T ss_pred CCCEEEccCCcCCC-CCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHHH
Confidence 45677777777774 56532 45677888888887 678888888888888888888888877776443
No 16
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.86 E-value=2.7e-20 Score=235.08 Aligned_cols=338 Identities=22% Similarity=0.219 Sum_probs=254.4
Q ss_pred CccccCcCCCcEEECCCCcc------eeccchhHHHhc-CCCCeEeccCCeeeEecCCcccccCcccceEEcCCccCcCC
Q 047927 447 PLSFFELKNLKILLLSSNKF------VGTIELDAIQRL-RNLFRLDLSYNRLAVVAGSSVYCFPPLLTTLSLASCKLSAI 519 (1005)
Q Consensus 447 ~~~l~~l~~L~~L~L~~n~l------~~~~~~~~l~~l-~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~l 519 (1005)
+.+|..+++|+.|.+..+.. ...+| ..+..+ .+|+.|++.++.+..++... .+.+|+.|++.+|++..+
T Consensus 551 ~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp-~~~~~lp~~Lr~L~~~~~~l~~lP~~f---~~~~L~~L~L~~s~l~~L 626 (1153)
T PLN03210 551 ENAFKGMRNLLFLKFYTKKWDQKKEVRWHLP-EGFDYLPPKLRLLRWDKYPLRCMPSNF---RPENLVKLQMQGSKLEKL 626 (1153)
T ss_pred HHHHhcCccccEEEEecccccccccceeecC-cchhhcCcccEEEEecCCCCCCCCCcC---CccCCcEEECcCcccccc
Confidence 45677888899888866532 22233 345555 46899999998888877543 356799999999999888
Q ss_pred CC-CCCCCceeEEECcCCcCCCCCChhhhhhcCCcccEEeCCCCc-ccCCCCCCccccCCcccEEEeccCcccccCCCCC
Q 047927 520 PN-LRKQTKLYHLDLSDNQISGEIPNWLWKIGKDSFNHLNLSHNL-LVSLEQPYSISDLTSLSVLDLHSNQIQGKIPPLP 597 (1005)
Q Consensus 520 ~~-l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 597 (1005)
+. +..+++|+.|+++++.....+|. +. ....|+.|++++|. +..++ ..+..+++|+.|++++|...+.+|.
T Consensus 627 ~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls--~l~~Le~L~L~~c~~L~~lp--~si~~L~~L~~L~L~~c~~L~~Lp~-- 699 (1153)
T PLN03210 627 WDGVHSLTGLRNIDLRGSKNLKEIPD-LS--MATNLETLKLSDCSSLVELP--SSIQYLNKLEDLDMSRCENLEILPT-- 699 (1153)
T ss_pred ccccccCCCCCEEECCCCCCcCcCCc-cc--cCCcccEEEecCCCCccccc--hhhhccCCCCEEeCCCCCCcCccCC--
Confidence 76 88889999999998876567774 22 34679999999874 44443 3467788999999988776554442
Q ss_pred CCcceeeCcCCcCccCCCcchhcccCceEEEEecCCcccccCChhhhccCCCCeEEccCccccccCCchhhhcCcccccE
Q 047927 598 PNAAYVDYSGNNFTSSIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGV 677 (1005)
Q Consensus 598 ~~l~~L~ls~n~~~~~~p~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~ 677 (1005)
.+ .+++|+.|++++|...+.+|.. .++|+.|++++|.+. .+|..+ .+. +|+.
T Consensus 700 -------------------~i--~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~--~L~~ 751 (1153)
T PLN03210 700 -------------------GI--NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-RLE--NLDE 751 (1153)
T ss_pred -------------------cC--CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc-ccc--cccc
Confidence 22 3678899999999877677653 568999999999987 677655 345 8888
Q ss_pred EECCCCcCC-------ccccCccCCCCCccEEeCCCCeecccCcccccCCCCCCEEECCCCcCCCCcchhhhcCCCCcEE
Q 047927 678 LNLRRNNLN-------GTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVL 750 (1005)
Q Consensus 678 L~L~~n~l~-------~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 750 (1005)
|++.++... ...+..+...++|+.|+|++|...+.+|.+++++++|+.|++++|...+.+|..+ ++++|+.|
T Consensus 752 L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L 830 (1153)
T PLN03210 752 LILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESL 830 (1153)
T ss_pred ccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEE
Confidence 988875422 2222233345789999999999888899999999999999999997666788776 79999999
Q ss_pred ecCCCcCCcccCCCCCCCCCCCccEEEccCCcccccCChHHHhhhhhhhhccCCchhhhchhhheecccccccccccEEE
Q 047927 751 ILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITV 830 (1005)
Q Consensus 751 ~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 830 (1005)
++++|.....+ |. ..++|+.|++++|.+. .+|..+
T Consensus 831 ~Ls~c~~L~~~--p~---~~~nL~~L~Ls~n~i~-~iP~si--------------------------------------- 865 (1153)
T PLN03210 831 DLSGCSRLRTF--PD---ISTNISDLNLSRTGIE-EVPWWI--------------------------------------- 865 (1153)
T ss_pred ECCCCCccccc--cc---cccccCEeECCCCCCc-cChHHH---------------------------------------
Confidence 99998755443 33 2468999999999987 456422
Q ss_pred EEcchHHHHHHhcccceEEECCCCeeeccCcccccCCCCCCEEECCCCc
Q 047927 831 TIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNA 879 (1005)
Q Consensus 831 ~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~ 879 (1005)
..+++|+.|+|++|+--..+|..+..+++|+.++++++.
T Consensus 866 ----------~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 866 ----------EKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred ----------hcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 146788999999855444688899999999999999885
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.79 E-value=4.1e-19 Score=208.47 Aligned_cols=205 Identities=25% Similarity=0.402 Sum_probs=111.4
Q ss_pred CCCeEEccCccccccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCccEEeCCCCeecccCcccccCCCCCCEEE
Q 047927 648 NLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILD 727 (1005)
Q Consensus 648 ~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ 727 (1005)
+|+.|++++|+++ .+|..+.. +|+.|+|++|.+.. +|..+. .+|++|++++|+++ .+|..+. ++|+.|+
T Consensus 221 nL~~L~Ls~N~Lt-sLP~~l~~----~L~~L~Ls~N~L~~-LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~ 289 (754)
T PRK15370 221 NIKTLYANSNQLT-SIPATLPD----TIQEMELSINRITE-LPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLS 289 (754)
T ss_pred CCCEEECCCCccc-cCChhhhc----cccEEECcCCccCc-CChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEE
Confidence 4555555555554 33433321 45555555555542 233332 24555555555555 2344332 3555555
Q ss_pred CCCCcCCCCcchhhhcCCCCcEEecCCCcCCcccCCCCCCCCCCCccEEEccCCcccccCChHHHhhhhhhhhccCCchh
Q 047927 728 LGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQS 807 (1005)
Q Consensus 728 Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~~~~~~p~~~~~~l~~~~~~~~~~~~ 807 (1005)
+++|++++ +|..+. ++|+.|++++|+++.. |..+ .++|+.|++++|.+++ +|..+
T Consensus 290 Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~L---P~~l--~~sL~~L~Ls~N~Lt~-LP~~l---------------- 344 (754)
T PRK15370 290 VYDNSIRT-LPAHLP--SGITHLNVQSNSLTAL---PETL--PPGLKTLEAGENALTS-LPASL---------------- 344 (754)
T ss_pred CCCCcccc-Ccccch--hhHHHHHhcCCccccC---Cccc--cccceeccccCCcccc-CChhh----------------
Confidence 55555553 233221 3455566666665531 2222 2456666666666654 34211
Q ss_pred hhchhhheecccccccccccEEEEEcchHHHHHHhcccceEEECCCCeeeccCcccccCCCCCCEEECCCCcCcccCchh
Q 047927 808 ELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSL 887 (1005)
Q Consensus 808 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~ 887 (1005)
.+.|+.|++++|+|+ .+|..+. +.|+.|+|++|+|+ .+|..
T Consensus 345 -----------------------------------~~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~ 385 (754)
T PRK15370 345 -----------------------------------PPELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPEN 385 (754)
T ss_pred -----------------------------------cCcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHh
Confidence 234667777777776 4565543 57777777777777 46665
Q ss_pred hhcCCCCCEEeCCCCcCcccCcccc----cCCCCCCeEEccCCcccc
Q 047927 888 IGNLREIESLDLSMNNLSGTIPAQL----ASLNFLSVLNLSYNHLVG 930 (1005)
Q Consensus 888 ~~~l~~L~~LdLs~N~l~~~ip~~l----~~l~~L~~L~ls~N~l~g 930 (1005)
+. ..|+.||+++|+|+ .+|..+ ..++.+..+++.+|+++.
T Consensus 386 l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls~ 429 (754)
T PRK15370 386 LP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFSE 429 (754)
T ss_pred HH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCccH
Confidence 54 35777778888777 445443 334667778888887763
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.78 E-value=7.7e-19 Score=206.18 Aligned_cols=202 Identities=26% Similarity=0.378 Sum_probs=91.7
Q ss_pred ceeEEECcCCcCCCCCChhhhhhcCCcccEEeCCCCcccCCCCCCccccCCcccEEEeccCcccccCCCCCCCcceeeCc
Q 047927 527 KLYHLDLSDNQISGEIPNWLWKIGKDSFNHLNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIPPLPPNAAYVDYS 606 (1005)
Q Consensus 527 ~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ls 606 (1005)
+...|+++++.++ .+|..+. ..++.|++++|+++.++... .++|+.|++++|.++. +|
T Consensus 179 ~~~~L~L~~~~Lt-sLP~~Ip----~~L~~L~Ls~N~LtsLP~~l----~~nL~~L~Ls~N~Lts-LP------------ 236 (754)
T PRK15370 179 NKTELRLKILGLT-TIPACIP----EQITTLILDNNELKSLPENL----QGNIKTLYANSNQLTS-IP------------ 236 (754)
T ss_pred CceEEEeCCCCcC-cCCcccc----cCCcEEEecCCCCCcCChhh----ccCCCEEECCCCcccc-CC------------
Confidence 4567777777776 4555432 34666666666666554321 1355666666655542 22
Q ss_pred CCcCccCCCcchhcccCceEEEEecCCcccccCChhhhccCCCCeEEccCccccccCCchhhhcCcccccEEECCCCcCC
Q 047927 607 GNNFTSSIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLN 686 (1005)
Q Consensus 607 ~n~~~~~~p~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~ 686 (1005)
..+ ...|+.|++++|.+. .+|..+. .+|+.|++++|+++ .+|..+. . +|+.|++++|+++
T Consensus 237 ---------~~l---~~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~--sL~~L~Ls~N~Lt 296 (754)
T PRK15370 237 ---------ATL---PDTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--E--ELRYLSVYDNSIR 296 (754)
T ss_pred ---------hhh---hccccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--C--CCcEEECCCCccc
Confidence 111 123344444444443 2333332 24555555555554 2343332 1 4555555555554
Q ss_pred ccccCccCCCCCccEEeCCCCeecccCcccccCCCCCCEEECCCCcCCCCcchhhhcCCCCcEEecCCCcCCcccCCCCC
Q 047927 687 GTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRY 766 (1005)
Q Consensus 687 ~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 766 (1005)
+. |..+. ++|+.|++++|+++. +|..+. ++|+.|++++|.+++ +|..+. ++|+.|++++|++.. + |..
T Consensus 297 ~L-P~~lp--~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~~-L--P~~ 364 (754)
T PRK15370 297 TL-PAHLP--SGITHLNVQSNSLTA-LPETLP--PGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQITV-L--PET 364 (754)
T ss_pred cC-cccch--hhHHHHHhcCCcccc-CCcccc--ccceeccccCCcccc-CChhhc--CcccEEECCCCCCCc-C--Chh
Confidence 32 22221 244555555555542 232221 345555555555543 333321 345555555554432 1 222
Q ss_pred CCCCCCccEEEccCCccc
Q 047927 767 NVSWPMLQIIDLASNKFS 784 (1005)
Q Consensus 767 ~~~l~~L~~L~ls~N~~~ 784 (1005)
+ .+.|+.|++++|+++
T Consensus 365 l--p~~L~~LdLs~N~Lt 380 (754)
T PRK15370 365 L--PPTITTLDVSRNALT 380 (754)
T ss_pred h--cCCcCEEECCCCcCC
Confidence 1 134555555555544
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.73 E-value=6.1e-19 Score=194.11 Aligned_cols=136 Identities=23% Similarity=0.237 Sum_probs=65.7
Q ss_pred ccCceEEEEecCCcccc----cCChhhhccCCCCeEEccCccccc------cCCchhhhcCcccccEEECCCCcCCcccc
Q 047927 621 FMSLSIFFSFSKNSLTG----VIPESICNATNLLVLDLSYNYLSG------MIPTCLINMSDSQLGVLNLRRNNLNGTVS 690 (1005)
Q Consensus 621 ~~~~L~~L~l~~n~l~~----~~p~~l~~l~~L~~L~Ls~N~l~~------~~p~~~~~l~~~~L~~L~L~~n~l~~~~~ 690 (1005)
.+..++.++++++.++. .++..+...++++.++++++.+.+ .++..+..++ +|+.|++++|.+.+..+
T Consensus 21 ~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~--~L~~L~l~~~~~~~~~~ 98 (319)
T cd00116 21 KLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC--GLQELDLSDNALGPDGC 98 (319)
T ss_pred HHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC--ceeEEEccCCCCChhHH
Confidence 34446666666666532 234445555566666666665541 1222333333 55555555555554333
Q ss_pred CccCCCCC---ccEEeCCCCeecc----cCcccccCC-CCCCEEECCCCcCCCC----cchhhhcCCCCcEEecCCCcCC
Q 047927 691 ATFPANCS---LRTLDLNGNQLEG----MVPKSLANC-SVLEILDLGNNQFDDT----FPCWVKNASRLHVLILRSNNFF 758 (1005)
Q Consensus 691 ~~~~~l~~---L~~L~L~~N~l~~----~~p~~l~~l-~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~ 758 (1005)
..+..+.. |++|++++|++++ .+...+..+ ++|+.|++++|.+++. ++..+..+++|++|++++|.+.
T Consensus 99 ~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 178 (319)
T cd00116 99 GVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIG 178 (319)
T ss_pred HHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCc
Confidence 33333333 5555555555542 122333444 5555555555555522 2223444445555555555544
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.70 E-value=3.4e-18 Score=188.20 Aligned_cols=257 Identities=24% Similarity=0.224 Sum_probs=188.0
Q ss_pred EEecCCccc-ccCChhhhccCCCCeEEccCcccccc----CCchhhhcCcccccEEECCCCcCCc------cccCccCCC
Q 047927 628 FSFSKNSLT-GVIPESICNATNLLVLDLSYNYLSGM----IPTCLINMSDSQLGVLNLRRNNLNG------TVSATFPAN 696 (1005)
Q Consensus 628 L~l~~n~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~~~L~~L~L~~n~l~~------~~~~~~~~l 696 (1005)
|+|..+.++ +..+..+..+.+|+.|+++++.+++. ++..+...+ .++.++++++.+.+ .++..+..+
T Consensus 3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~--~l~~l~l~~~~~~~~~~~~~~~~~~l~~~ 80 (319)
T cd00116 3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQP--SLKELCLSLNETGRIPRGLQSLLQGLTKG 80 (319)
T ss_pred cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCC--CceEEeccccccCCcchHHHHHHHHHHhc
Confidence 445555555 34456677788899999999998542 444555554 69999999998873 334567778
Q ss_pred CCccEEeCCCCeecccCcccccCCCC---CCEEECCCCcCCC----CcchhhhcC-CCCcEEecCCCcCCccc--CCCCC
Q 047927 697 CSLRTLDLNGNQLEGMVPKSLANCSV---LEILDLGNNQFDD----TFPCWVKNA-SRLHVLILRSNNFFGNI--SCPRY 766 (1005)
Q Consensus 697 ~~L~~L~L~~N~l~~~~p~~l~~l~~---L~~L~Ls~N~l~~----~~p~~~~~l-~~L~~L~L~~N~l~~~~--~~~~~ 766 (1005)
++|++|++++|.+.+..+..+..+.. |++|++++|++++ .+...+..+ ++|+.|++++|.+++.. ..+..
T Consensus 81 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~ 160 (319)
T cd00116 81 CGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKA 160 (319)
T ss_pred CceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHH
Confidence 89999999999998766666666655 9999999999884 233455667 89999999999988432 11334
Q ss_pred CCCCCCccEEEccCCcccccCChHHHhhhhhhhhccCCchhhhchhhheecccccccccccEEEEEcchHHHHHHhcccc
Q 047927 767 NVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIF 846 (1005)
Q Consensus 767 ~~~l~~L~~L~ls~N~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 846 (1005)
+..++.|+.|++++|.+++.....+.. .....+.|
T Consensus 161 ~~~~~~L~~L~l~~n~l~~~~~~~l~~---------------------------------------------~l~~~~~L 195 (319)
T cd00116 161 LRANRDLKELNLANNGIGDAGIRALAE---------------------------------------------GLKANCNL 195 (319)
T ss_pred HHhCCCcCEEECcCCCCchHHHHHHHH---------------------------------------------HHHhCCCC
Confidence 566788999999999987522111110 01124678
Q ss_pred eEEECCCCeeecc----CcccccCCCCCCEEECCCCcCcccCchhhhc-----CCCCCEEeCCCCcCc----ccCccccc
Q 047927 847 TSIDFSRNNFEGP----IPEEMGLLQSLCALNLSHNALTGSIPSLIGN-----LREIESLDLSMNNLS----GTIPAQLA 913 (1005)
Q Consensus 847 ~~L~Ls~N~l~g~----ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~-----l~~L~~LdLs~N~l~----~~ip~~l~ 913 (1005)
+.|++++|.+++. ++..+..+++|++|++++|.+++..+..+.. .+.|++|++++|.++ ..++..+.
T Consensus 196 ~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~ 275 (319)
T cd00116 196 EVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLA 275 (319)
T ss_pred CEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHh
Confidence 9999999999754 4456677899999999999999744444433 379999999999997 34556677
Q ss_pred CCCCCCeEEccCCccccc
Q 047927 914 SLNFLSVLNLSYNHLVGR 931 (1005)
Q Consensus 914 ~l~~L~~L~ls~N~l~g~ 931 (1005)
.++.|+++|+++|+++..
T Consensus 276 ~~~~L~~l~l~~N~l~~~ 293 (319)
T cd00116 276 EKESLLELDLRGNKFGEE 293 (319)
T ss_pred cCCCccEEECCCCCCcHH
Confidence 889999999999999854
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.64 E-value=7.2e-18 Score=151.24 Aligned_cols=181 Identities=30% Similarity=0.540 Sum_probs=127.2
Q ss_pred CCCccEEeCCCCeecccCcccccCCCCCCEEECCCCcCCCCcchhhhcCCCCcEEecCCCcCCcccCCCCCCCCCCCccE
Q 047927 696 NCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQI 775 (1005)
Q Consensus 696 l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~ 775 (1005)
+...+.|.|++|+++ .+|..+..+.+|+.|++++|+++ .+|..++.+++|+.|+++-|++.- .|..++.+|.|+.
T Consensus 32 ~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~~---lprgfgs~p~lev 106 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLNI---LPRGFGSFPALEV 106 (264)
T ss_pred hhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhhc---CccccCCCchhhh
Confidence 334455555555555 34445555666666666666665 355556666666666666666542 2666777777777
Q ss_pred EEccCCcccc-cCChHHHhhhhhhhhccCCchhhhchhhheecccccccccccEEEEEcchHHHHHHhcccceEEECCCC
Q 047927 776 IDLASNKFSG-RLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRN 854 (1005)
Q Consensus 776 L~ls~N~~~~-~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N 854 (1005)
||+++|+++. .+|..+| .++.|+.|+|+.|
T Consensus 107 ldltynnl~e~~lpgnff-------------------------------------------------~m~tlralyl~dn 137 (264)
T KOG0617|consen 107 LDLTYNNLNENSLPGNFF-------------------------------------------------YMTTLRALYLGDN 137 (264)
T ss_pred hhccccccccccCCcchh-------------------------------------------------HHHHHHHHHhcCC
Confidence 7777777653 2343222 3566778899999
Q ss_pred eeeccCcccccCCCCCCEEECCCCcCcccCchhhhcCCCCCEEeCCCCcCcccCcccccCCCCC---CeEEccCCccccc
Q 047927 855 NFEGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLASLNFL---SVLNLSYNHLVGR 931 (1005)
Q Consensus 855 ~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L---~~L~ls~N~l~g~ 931 (1005)
.|. .+|..++++++||.|.+..|.+- ..|.++|.+++|+.|++.+|+++ .+|..++++.-. +++.+.+|+..-.
T Consensus 138 dfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l~l~~~k~v~r~E~NPwv~p 214 (264)
T KOG0617|consen 138 DFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANLDLVGNKQVMRMEENPWVNP 214 (264)
T ss_pred Ccc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhhhhhhhHHHHhhhhCCCCCh
Confidence 997 78999999999999999999998 78999999999999999999999 677778776543 4566778887654
Q ss_pred CC
Q 047927 932 IP 933 (1005)
Q Consensus 932 ip 933 (1005)
|.
T Consensus 215 Ia 216 (264)
T KOG0617|consen 215 IA 216 (264)
T ss_pred HH
Confidence 43
No 22
>PLN03150 hypothetical protein; Provisional
Probab=99.58 E-value=4.5e-15 Score=174.65 Aligned_cols=117 Identities=34% Similarity=0.607 Sum_probs=104.8
Q ss_pred cceEEECCCCeeeccCcccccCCCCCCEEECCCCcCcccCchhhhcCCCCCEEeCCCCcCcccCcccccCCCCCCeEEcc
Q 047927 845 IFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLNLS 924 (1005)
Q Consensus 845 ~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls 924 (1005)
.++.|+|++|.++|.+|..++.+++|+.|+|++|+++|.+|..++++++|+.|||++|+++|.+|+.++++++|++|||+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccCCCCCc--ccccccccccCCCCCCCCCC-CCCC
Q 047927 925 YNHLVGRIPTSTQ--LQSFLATSFEGNDRLWGPPL-NVCP 961 (1005)
Q Consensus 925 ~N~l~g~ip~~~~--~~~~~~~~~~gn~~lc~~~~-~~c~ 961 (1005)
+|+++|.+|.... +.......+.||+.+||.|. ..|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~ 538 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG 538 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence 9999999997532 22334567899999999764 3474
No 23
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.57 E-value=5.6e-17 Score=145.58 Aligned_cols=185 Identities=28% Similarity=0.439 Sum_probs=111.8
Q ss_pred ccCCCCeEEccCccccccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCccEEeCCCCeecccCcccccCCCCCC
Q 047927 645 NATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLE 724 (1005)
Q Consensus 645 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~ 724 (1005)
++.+.+.|.||+|+++ .+|..+..+. +|++|++++|++.. .|..++.+++|+.|+++-|++. ..|..|+.++.|+
T Consensus 31 ~~s~ITrLtLSHNKl~-~vppnia~l~--nlevln~~nnqie~-lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~le 105 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLT-VVPPNIAELK--NLEVLNLSNNQIEE-LPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALE 105 (264)
T ss_pred chhhhhhhhcccCcee-ecCCcHHHhh--hhhhhhcccchhhh-cChhhhhchhhhheecchhhhh-cCccccCCCchhh
Confidence 4445555666666665 4555555555 56666666666552 3445555556666666666655 5566666666666
Q ss_pred EEECCCCcCC-CCcchhhhcCCCCcEEecCCCcCCcccCCCCCCCCCCCccEEEccCCcccccCChHHHhhhhhhhhccC
Q 047927 725 ILDLGNNQFD-DTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEG 803 (1005)
Q Consensus 725 ~L~Ls~N~l~-~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~~~~~~p~~~~~~l~~~~~~~~ 803 (1005)
.||+.+|.+. ..+|.-|..++.|+.|+|+.|.|.- .|..++.+++|++
T Consensus 106 vldltynnl~e~~lpgnff~m~tlralyl~dndfe~---lp~dvg~lt~lqi---------------------------- 154 (264)
T KOG0617|consen 106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEI---LPPDVGKLTNLQI---------------------------- 154 (264)
T ss_pred hhhccccccccccCCcchhHHHHHHHHHhcCCCccc---CChhhhhhcceeE----------------------------
Confidence 6666666554 3455555555555556665555531 1444444444444
Q ss_pred CchhhhchhhheecccccccccccEEEEEcchHHHHHHhcccceEEECCCCeeeccCcccccCCCCCCEEECCCCcCccc
Q 047927 804 RSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGS 883 (1005)
Q Consensus 804 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ 883 (1005)
|.+..|.+- .+|.++|.++.|++|.+.+|+++ .
T Consensus 155 ---------------------------------------------l~lrdndll-~lpkeig~lt~lrelhiqgnrl~-v 187 (264)
T KOG0617|consen 155 ---------------------------------------------LSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-V 187 (264)
T ss_pred ---------------------------------------------EeeccCchh-hCcHHHHHHHHHHHHhcccceee-e
Confidence 444444443 57888888888888888888888 6
Q ss_pred CchhhhcCCC---CCEEeCCCCcCcccCcccc
Q 047927 884 IPSLIGNLRE---IESLDLSMNNLSGTIPAQL 912 (1005)
Q Consensus 884 ip~~~~~l~~---L~~LdLs~N~l~~~ip~~l 912 (1005)
+|.+++++.- =+.+.+.+|..-..|.++|
T Consensus 188 lppel~~l~l~~~k~v~r~E~NPwv~pIaeQf 219 (264)
T KOG0617|consen 188 LPPELANLDLVGNKQVMRMEENPWVNPIAEQF 219 (264)
T ss_pred cChhhhhhhhhhhHHHHhhhhCCCCChHHHHH
Confidence 7777877643 2456677787776776665
No 24
>PLN03150 hypothetical protein; Provisional
Probab=99.38 E-value=2.1e-12 Score=152.26 Aligned_cols=128 Identities=32% Similarity=0.536 Sum_probs=101.6
Q ss_pred cCCCcHHHHHHHHHHhhhCCCCCCCcccccCCCCCCCCc----ccceeEECCC-----CCEEEEEcCCCCcccccCCCcc
Q 047927 5 SGQCQSDQQSLLLQMKSRLTFDSSVSFRMVQWSQSNDCC----TWSGVDCDEA-----GRVIGLDLSEESISAGIDNSSS 75 (1005)
Q Consensus 5 ~~~~~~~~~~~ll~~k~~~~~~~~~~~~~~~w~~~~~~c----~w~gv~c~~~-----~~v~~L~L~~~~l~~~~~~~~~ 75 (1005)
...+.++|.+||++||+.+.. +. ..+|+. ..|| .|.||.|... .+|+.|+|+++.+.+.+ +..
T Consensus 366 ~~~t~~~~~~aL~~~k~~~~~-~~----~~~W~g-~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~i--p~~ 437 (623)
T PLN03150 366 ESKTLLEEVSALQTLKSSLGL-PL----RFGWNG-DPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFI--PND 437 (623)
T ss_pred ccccCchHHHHHHHHHHhcCC-cc----cCCCCC-CCCCCcccccccceeeccCCCCceEEEEEECCCCCccccC--CHH
Confidence 345677899999999999854 31 247963 3442 7999999521 25899999999998877 778
Q ss_pred cccccccceeecCCccCCCCCCCCcccCCCCCcEEEcccCCCcCCCcccccCCCCCcEEeCCCccc
Q 047927 76 LFSLKYLQSLNLAFNMFNATEIPSGLGNLTNLTTLNLSNAGFAGQIPIQVSGMTRLVTLDLSGMYF 141 (1005)
Q Consensus 76 l~~l~~L~~L~Ls~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~l~~l~~L~~L~ls~n~~ 141 (1005)
++++++|++|+|++|.+.+. +|..++.+++|++|+|++|.+.+.+|..++++++|++|++++|.+
T Consensus 438 i~~L~~L~~L~Ls~N~l~g~-iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l 502 (623)
T PLN03150 438 ISKLRHLQSINLSGNSIRGN-IPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSL 502 (623)
T ss_pred HhCCCCCCEEECCCCcccCc-CChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcc
Confidence 88888889999988888776 888888888888888888888888888888888888888877654
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.24 E-value=3.9e-13 Score=143.60 Aligned_cols=195 Identities=26% Similarity=0.401 Sum_probs=120.8
Q ss_pred EEEEecCCcccccCChhhhccCCCCeEEccCccccccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCccEEeCC
Q 047927 626 IFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLN 705 (1005)
Q Consensus 626 ~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 705 (1005)
...+++.|++. .+|..++.+..|+.+.+..|.+. .+|..+.++. .|+.|||+.|+++. .|..+..+ -|+.|-++
T Consensus 78 ~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~--~lt~l~ls~NqlS~-lp~~lC~l-pLkvli~s 151 (722)
T KOG0532|consen 78 VFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLE--ALTFLDLSSNQLSH-LPDGLCDL-PLKVLIVS 151 (722)
T ss_pred hhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhh--HHHHhhhccchhhc-CChhhhcC-cceeEEEe
Confidence 44555555555 45566666666666666666665 5666666665 56666666666652 33333333 36666666
Q ss_pred CCeecccCcccccCCCCCCEEECCCCcCCCCcchhhhcCCCCcEEecCCCcCCcccCCCCCCCCCCCccEEEccCCcccc
Q 047927 706 GNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSG 785 (1005)
Q Consensus 706 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~~~~ 785 (1005)
+|+++ .+|+.++.+..|..||.+.|.+. .+|..++++.+|+.|.++.|++..
T Consensus 152 NNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~-------------------------- 203 (722)
T KOG0532|consen 152 NNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLED-------------------------- 203 (722)
T ss_pred cCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhh--------------------------
Confidence 66666 55666666666666666666665 345555566666666555555431
Q ss_pred cCChHHHhhhhhhhhccCCchhhhchhhheecccccccccccEEEEEcchHHHHHHhcccceEEECCCCeeeccCccccc
Q 047927 786 RLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMG 865 (1005)
Q Consensus 786 ~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~ 865 (1005)
+|.+.. + -.|..||+|+|+++ .||-.|.
T Consensus 204 -lp~El~-~-------------------------------------------------LpLi~lDfScNkis-~iPv~fr 231 (722)
T KOG0532|consen 204 -LPEELC-S-------------------------------------------------LPLIRLDFSCNKIS-YLPVDFR 231 (722)
T ss_pred -CCHHHh-C-------------------------------------------------CceeeeecccCcee-ecchhhh
Confidence 222211 0 12567888888888 7999999
Q ss_pred CCCCCCEEECCCCcCcccCchhhh---cCCCCCEEeCCCCcCcccC
Q 047927 866 LLQSLCALNLSHNALTGSIPSLIG---NLREIESLDLSMNNLSGTI 908 (1005)
Q Consensus 866 ~l~~L~~L~Ls~N~l~g~ip~~~~---~l~~L~~LdLs~N~l~~~i 908 (1005)
+|+.|++|-|.+|.|. ..|..|- ..-=.++|+..-++ +|.-
T Consensus 232 ~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q-~~~a 275 (722)
T KOG0532|consen 232 KMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ-SGGA 275 (722)
T ss_pred hhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhcc-ccCC
Confidence 9999999999999999 5676663 33345677777775 4433
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.23 E-value=6.5e-13 Score=141.97 Aligned_cols=158 Identities=27% Similarity=0.358 Sum_probs=122.9
Q ss_pred CCCcchhcccCceEEEEecCCcccccCChhhhccCCCCeEEccCccccccCCchhhhcCcccccEEECCCCcCCccccCc
Q 047927 613 SIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSAT 692 (1005)
Q Consensus 613 ~~p~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~ 692 (1005)
.+|..+.. +..|+.+.++.|.+. .+|..++++..|..+||+.|+++ .+|..++.++ |+.|.+++|+++ .+|+.
T Consensus 89 elp~~~~~-f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp---Lkvli~sNNkl~-~lp~~ 161 (722)
T KOG0532|consen 89 ELPEEACA-FVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP---LKVLIVSNNKLT-SLPEE 161 (722)
T ss_pred cCchHHHH-HHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc---ceeEEEecCccc-cCCcc
Confidence 55655553 556777888888877 78899999999999999999998 8899999985 999999999998 56777
Q ss_pred cCCCCCccEEeCCCCeecccCcccccCCCCCCEEECCCCcCCCCcchhhhcCCCCcEEecCCCcCCcccCCCCCCCCCCC
Q 047927 693 FPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPM 772 (1005)
Q Consensus 693 ~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~ 772 (1005)
++.+..|..||.+.|.+. .+|..++++.+|+.|.+..|++.. +|+.+..+ .|..||+++|++... |..+..+..
T Consensus 162 ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~-lp~El~~L-pLi~lDfScNkis~i---Pv~fr~m~~ 235 (722)
T KOG0532|consen 162 IGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLED-LPEELCSL-PLIRLDFSCNKISYL---PVDFRKMRH 235 (722)
T ss_pred cccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhh-CCHHHhCC-ceeeeecccCceeec---chhhhhhhh
Confidence 788899999999999999 678899999999999999999985 56666644 466777777776521 444444444
Q ss_pred ccEEEccCCcc
Q 047927 773 LQIIDLASNKF 783 (1005)
Q Consensus 773 L~~L~ls~N~~ 783 (1005)
|++|-|.+|++
T Consensus 236 Lq~l~LenNPL 246 (722)
T KOG0532|consen 236 LQVLQLENNPL 246 (722)
T ss_pred heeeeeccCCC
Confidence 44444444433
No 27
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.20 E-value=2.7e-12 Score=129.84 Aligned_cols=146 Identities=23% Similarity=0.260 Sum_probs=72.4
Q ss_pred cCCCCCcEEeCCCcccccCccccCCCChhhhhhcCccCceeecCCccCCCchhhHHHH---------HhccCCCccEEEc
Q 047927 126 SGMTRLVTLDLSGMYFVRAPLKLENPNLSGLLQNLAELRELYLDGVNISAPGIEWCQA---------LSSLVPKLQVLSL 196 (1005)
Q Consensus 126 ~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~---------l~~l~~~L~~L~L 196 (1005)
-++++|++||||+|.+... ....+...+..+..|++|++.+|.+...+-..+.. .....+.|+++..
T Consensus 89 ~~~~~L~~ldLSDNA~G~~----g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~ 164 (382)
T KOG1909|consen 89 LGCPKLQKLDLSDNAFGPK----GIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFIC 164 (382)
T ss_pred hcCCceeEeeccccccCcc----chHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEe
Confidence 3445666666666654221 12334555666777777777777665544433221 1122356666666
Q ss_pred cCCCCCCCCC----ccccCCCCCcEEECCCCCCCCC----cchhccCCCCCcEEEccCCCCCcc----CccccCCCCCCC
Q 047927 197 SGCFLSGPVD----PSLSNLRSLSVIRLDMNDLYSP----VPEFLADFSNLTSLYLSSCGLHGA----FPEKILQLPTLE 264 (1005)
Q Consensus 197 ~~n~~~~~~~----~~l~~l~~L~~L~l~~n~~~~~----~p~~l~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~ 264 (1005)
.+|++..... ..|...+.|+.+.+..|.+... +...+..+++|++|||.+|-++.. +...+..+++|+
T Consensus 165 ~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~ 244 (382)
T KOG1909|consen 165 GRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLR 244 (382)
T ss_pred eccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchhe
Confidence 6665543322 2234445555555555544321 123344555555555555554422 222333445555
Q ss_pred EEeCCCCCCCC
Q 047927 265 TLDLSYNELLQ 275 (1005)
Q Consensus 265 ~L~Ls~n~~~~ 275 (1005)
.|++++|.+..
T Consensus 245 El~l~dcll~~ 255 (382)
T KOG1909|consen 245 ELNLGDCLLEN 255 (382)
T ss_pred eeccccccccc
Confidence 55555554433
No 28
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.10 E-value=1e-10 Score=132.33 Aligned_cols=198 Identities=33% Similarity=0.453 Sum_probs=104.9
Q ss_pred eEEccCccccccCCchhhhcCcccccEEECCCCcCCccccCccCCC-CCccEEeCCCCeecccCcccccCCCCCCEEECC
Q 047927 651 VLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPAN-CSLRTLDLNGNQLEGMVPKSLANCSVLEILDLG 729 (1005)
Q Consensus 651 ~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls 729 (1005)
.++++.|.+... ...+...+ .++.|++.+|.++.+.+. ...+ .+|+.|++++|++. .+|..+..+++|+.|+++
T Consensus 97 ~l~~~~~~~~~~-~~~~~~~~--~l~~L~l~~n~i~~i~~~-~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~ 171 (394)
T COG4886 97 SLDLNLNRLRSN-ISELLELT--NLTSLDLDNNNITDIPPL-IGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLS 171 (394)
T ss_pred eeeccccccccC-chhhhccc--ceeEEecCCcccccCccc-cccchhhcccccccccchh-hhhhhhhccccccccccC
Confidence 456666655322 12222323 566666666666644332 2222 25666666666666 344556666666666666
Q ss_pred CCcCCCCcchhhhcCCCCcEEecCCCcCCcccCCCCCCCCCCCccEEEccCCcccccCChHHHhhhhhhhhccCCchhhh
Q 047927 730 NNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSEL 809 (1005)
Q Consensus 730 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~~~~~~p~~~~~~l~~~~~~~~~~~~~~ 809 (1005)
+|+++. +|...+..+.|+.|++++|++... |.......
T Consensus 172 ~N~l~~-l~~~~~~~~~L~~L~ls~N~i~~l---~~~~~~~~-------------------------------------- 209 (394)
T COG4886 172 FNDLSD-LPKLLSNLSNLNNLDLSGNKISDL---PPEIELLS-------------------------------------- 209 (394)
T ss_pred Cchhhh-hhhhhhhhhhhhheeccCCccccC---chhhhhhh--------------------------------------
Confidence 666663 333333555555555555555421 22222222
Q ss_pred chhhheecccccccccccEEEEEcchHHHHHHhcccceEEECCCCeeeccCcccccCCCCCCEEECCCCcCcccCchhhh
Q 047927 810 KHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSLIG 889 (1005)
Q Consensus 810 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~ 889 (1005)
.+.++++++|+.. .++..++++..+..+.+++|++. .+|..++
T Consensus 210 -----------------------------------~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~ 252 (394)
T COG4886 210 -----------------------------------ALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIG 252 (394)
T ss_pred -----------------------------------hhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhc
Confidence 2444555555322 34455556666666666666665 3355566
Q ss_pred cCCCCCEEeCCCCcCcccCcccccCCCCCCeEEccCCcccccCCC
Q 047927 890 NLREIESLDLSMNNLSGTIPAQLASLNFLSVLNLSYNHLVGRIPT 934 (1005)
Q Consensus 890 ~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~ 934 (1005)
.+++++.|++++|+++.. +. ++.+..++.||+++|.++...|.
T Consensus 253 ~l~~l~~L~~s~n~i~~i-~~-~~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 253 NLSNLETLDLSNNQISSI-SS-LGSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred cccccceecccccccccc-cc-ccccCccCEEeccCccccccchh
Confidence 666666666666666633 22 66666666666666666655443
No 29
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.10 E-value=1.3e-11 Score=125.06 Aligned_cols=244 Identities=22% Similarity=0.197 Sum_probs=170.3
Q ss_pred CCEEEEEcCCCCccccc--CCCcccccccccceeecCCccC--CCCCCCCc-------ccCCCCCcEEEcccCCCcCCCc
Q 047927 54 GRVIGLDLSEESISAGI--DNSSSLFSLKYLQSLNLAFNMF--NATEIPSG-------LGNLTNLTTLNLSNAGFAGQIP 122 (1005)
Q Consensus 54 ~~v~~L~L~~~~l~~~~--~~~~~l~~l~~L~~L~Ls~~~~--~~~~lp~~-------l~~l~~L~~L~Ls~n~~~~~lp 122 (1005)
..++.++|+|+.+...- .....+.+.+.||.-++|.-.. ...++|+. +-.+++|++||||+|.+....+
T Consensus 30 ~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~ 109 (382)
T KOG1909|consen 30 DSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGI 109 (382)
T ss_pred CceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccch
Confidence 56999999999886321 0034567788999999985321 11235543 3456799999999999875555
Q ss_pred cc----ccCCCCCcEEeCCCcccccCccccC-----CCChhhhhhcCccCceeecCCccCCCchhhHHHHHhccCCCccE
Q 047927 123 IQ----VSGMTRLVTLDLSGMYFVRAPLKLE-----NPNLSGLLQNLAELRELYLDGVNISAPGIEWCQALSSLVPKLQV 193 (1005)
Q Consensus 123 ~~----l~~l~~L~~L~ls~n~~~~~~~~~~-----~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~L~~ 193 (1005)
.. +..++.|++|.+.+|.+.......- .-.....+..-+.|+.+.+..|.+...+...+.......+.|+.
T Consensus 110 ~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~lee 189 (382)
T KOG1909|consen 110 RGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEE 189 (382)
T ss_pred HHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccce
Confidence 43 4678999999999997643221110 00122345677899999999999988888777776665599999
Q ss_pred EEccCCCCCCCC----CccccCCCCCcEEECCCCCCCCC----cchhccCCCCCcEEEccCCCCCccCcccc-----CCC
Q 047927 194 LSLSGCFLSGPV----DPSLSNLRSLSVIRLDMNDLYSP----VPEFLADFSNLTSLYLSSCGLHGAFPEKI-----LQL 260 (1005)
Q Consensus 194 L~L~~n~~~~~~----~~~l~~l~~L~~L~l~~n~~~~~----~p~~l~~l~~L~~L~L~~n~l~~~~p~~l-----~~l 260 (1005)
+.++.|.+.... ..++..+++|++|++..|.++.. +...+..++.|++|++++|.+.......+ ...
T Consensus 190 vr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~ 269 (382)
T KOG1909|consen 190 VRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESA 269 (382)
T ss_pred EEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccC
Confidence 999999876432 35678999999999999988654 34567778999999999998876544433 236
Q ss_pred CCCCEEeCCCCCCCCCCCCc----ccCCCCCcEEEcccccc
Q 047927 261 PTLETLDLSYNELLQGSLPD----FHQNLSLETLILSATNF 297 (1005)
Q Consensus 261 ~~L~~L~Ls~n~~~~~~~~~----~~~~~~L~~L~L~~n~l 297 (1005)
|.|++|.+.+|.|....... ....+.|++|+|++|.+
T Consensus 270 p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 270 PSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred CCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 88888888888765433221 12245555555555555
No 30
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.01 E-value=3.9e-10 Score=127.70 Aligned_cols=199 Identities=33% Similarity=0.444 Sum_probs=123.4
Q ss_pred EEecCCcccccCChhhhccCCCCeEEccCccccccCCchhhhc-CcccccEEECCCCcCCccccCccCCCCCccEEeCCC
Q 047927 628 FSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINM-SDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNG 706 (1005)
Q Consensus 628 L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 706 (1005)
+..+.|.+...+ ..+...+.++.|++.+|.++ .+|...... . +|+.|++++|++... |..+..+++|+.|++++
T Consensus 98 l~~~~~~~~~~~-~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~--nL~~L~l~~N~i~~l-~~~~~~l~~L~~L~l~~ 172 (394)
T COG4886 98 LDLNLNRLRSNI-SELLELTNLTSLDLDNNNIT-DIPPLIGLLKS--NLKELDLSDNKIESL-PSPLRNLPNLKNLDLSF 172 (394)
T ss_pred eeccccccccCc-hhhhcccceeEEecCCcccc-cCccccccchh--hcccccccccchhhh-hhhhhccccccccccCC
Confidence 444444443222 23344567777777777777 445444443 2 577888888887743 34567777888888888
Q ss_pred CeecccCcccccCCCCCCEEECCCCcCCCCcchhhhcCCCCcEEecCCCcCCcccCCCCCCCCCCCccEEEccCCccccc
Q 047927 707 NQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGR 786 (1005)
Q Consensus 707 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~~~~~ 786 (1005)
|+++ .+|...+.++.|+.|++++|+++. +|...+....|++|.+++|+... .+..+..+.++.
T Consensus 173 N~l~-~l~~~~~~~~~L~~L~ls~N~i~~-l~~~~~~~~~L~~l~~~~N~~~~---~~~~~~~~~~l~------------ 235 (394)
T COG4886 173 NDLS-DLPKLLSNLSNLNNLDLSGNKISD-LPPEIELLSALEELDLSNNSIIE---LLSSLSNLKNLS------------ 235 (394)
T ss_pred chhh-hhhhhhhhhhhhhheeccCCcccc-CchhhhhhhhhhhhhhcCCccee---cchhhhhccccc------------
Confidence 8888 455555577888888888888874 55555566668888888885221 133333333333
Q ss_pred CChHHHhhhhhhhhccCCchhhhchhhheecccccccccccEEEEEcchHHHHHHhcccceEEECCCCeeeccCcccccC
Q 047927 787 LPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGL 866 (1005)
Q Consensus 787 ~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~ 866 (1005)
.+.+++|++. .+|..++.
T Consensus 236 -------------------------------------------------------------~l~l~~n~~~-~~~~~~~~ 253 (394)
T COG4886 236 -------------------------------------------------------------GLELSNNKLE-DLPESIGN 253 (394)
T ss_pred -------------------------------------------------------------ccccCCceee-eccchhcc
Confidence 3444444444 22555666
Q ss_pred CCCCCEEECCCCcCcccCchhhhcCCCCCEEeCCCCcCcccCcccc
Q 047927 867 LQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQL 912 (1005)
Q Consensus 867 l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l 912 (1005)
+..++.|++++|.++ .++. ++.+.+++.||+++|.++...|...
T Consensus 254 l~~l~~L~~s~n~i~-~i~~-~~~~~~l~~L~~s~n~~~~~~~~~~ 297 (394)
T COG4886 254 LSNLETLDLSNNQIS-SISS-LGSLTNLRELDLSGNSLSNALPLIA 297 (394)
T ss_pred ccccceecccccccc-cccc-ccccCccCEEeccCccccccchhhh
Confidence 666777777777777 3444 6677777777777777776555443
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=1.8e-10 Score=120.07 Aligned_cols=215 Identities=25% Similarity=0.257 Sum_probs=108.9
Q ss_pred ccccccceeecCCccCCCCCCCCcccCCCCCcEEEcccCCCcCCCc--ccccCCCCCcEEeCCCcccccCccccCCCChh
Q 047927 77 FSLKYLQSLNLAFNMFNATEIPSGLGNLTNLTTLNLSNAGFAGQIP--IQVSGMTRLVTLDLSGMYFVRAPLKLENPNLS 154 (1005)
Q Consensus 77 ~~l~~L~~L~Ls~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp--~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~ 154 (1005)
++++.||...|.++.+.....-+....|++++.||||.|-+...-| .-..+|++|+.|+++.|++..... .
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~-------s 190 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFIS-------S 190 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCcc-------c
Confidence 3566777777777666432111355667777777777776553322 223457777777777776533211 1
Q ss_pred hhhhcCccCceeecCCccCCCchhhHHHHHhccCCCccEEEccCCCCCCCCCccccCCCCCcEEECCCCCCCCCcchhcc
Q 047927 155 GLLQNLAELRELYLDGVNISAPGIEWCQALSSLVPKLQVLSLSGCFLSGPVDPSLSNLRSLSVIRLDMNDLYSPVPEFLA 234 (1005)
Q Consensus 155 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~ 234 (1005)
..-.-+++|+.|.++++.++...+.++. ..+|+|+.|+|..|.....-.....-+..|+.|+|++|++....
T Consensus 191 ~~~~~l~~lK~L~l~~CGls~k~V~~~~---~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~----- 262 (505)
T KOG3207|consen 191 NTTLLLSHLKQLVLNSCGLSWKDVQWIL---LTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFD----- 262 (505)
T ss_pred cchhhhhhhheEEeccCCCCHHHHHHHH---HhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccc-----
Confidence 1122455566666666655543333332 12355666666555422222222233344444444444443221
Q ss_pred CCCCCcEEEccCCCCCccCccccCCCCCCCEEeCCCCCCCCCCCCcc------cCCCCCcEEEccccccccc-Cchhhcc
Q 047927 235 DFSNLTSLYLSSCGLHGAFPEKILQLPTLETLDLSYNELLQGSLPDF------HQNLSLETLILSATNFSGI-LPDSIKN 307 (1005)
Q Consensus 235 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~------~~~~~L~~L~L~~n~l~~~-~p~~l~~ 307 (1005)
.-...+.++.|+.|.++.+.+.+...++. ..+++|+.|++..|++... .-..+..
T Consensus 263 ------------------~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~ 324 (505)
T KOG3207|consen 263 ------------------QGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRT 324 (505)
T ss_pred ------------------cccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhc
Confidence 01223445555555555555444444433 2356666666666665321 1134455
Q ss_pred CCCCCEEeecCCccCCC
Q 047927 308 LKNLSRVEFYLCNFNGP 324 (1005)
Q Consensus 308 l~~L~~L~l~~n~~~~~ 324 (1005)
+++|+.|.+..|.+..+
T Consensus 325 l~nlk~l~~~~n~ln~e 341 (505)
T KOG3207|consen 325 LENLKHLRITLNYLNKE 341 (505)
T ss_pred cchhhhhhccccccccc
Confidence 66777777777766643
No 32
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.95 E-value=1.8e-10 Score=113.53 Aligned_cols=88 Identities=27% Similarity=0.369 Sum_probs=51.4
Q ss_pred hhccCCCCeEEccCccccccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCccEEeCCCCeecccCc-ccccCCC
Q 047927 643 ICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVP-KSLANCS 721 (1005)
Q Consensus 643 l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p-~~l~~l~ 721 (1005)
+..+++|+.||||+|.++ .+..+-..+. +.+.|.|+.|.+... .++..+.+|.+||+++|+|..... ..+++++
T Consensus 325 La~L~~L~~LDLS~N~Ls-~~~Gwh~KLG--NIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LP 399 (490)
T KOG1259|consen 325 LAELPQLQLLDLSGNLLA-ECVGWHLKLG--NIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLP 399 (490)
T ss_pred hhhcccceEeecccchhH-hhhhhHhhhc--CEeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhccccccc
Confidence 566777788888888776 4444444444 566666666665432 234555566666666666654321 3455555
Q ss_pred CCCEEECCCCcCCC
Q 047927 722 VLEILDLGNNQFDD 735 (1005)
Q Consensus 722 ~L~~L~Ls~N~l~~ 735 (1005)
-|+.+.|.+|++.+
T Consensus 400 CLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 400 CLETLRLTGNPLAG 413 (490)
T ss_pred HHHHHhhcCCCccc
Confidence 55555555555553
No 33
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=1.4e-10 Score=120.73 Aligned_cols=210 Identities=24% Similarity=0.182 Sum_probs=109.1
Q ss_pred ccCCCCCEEeecCCccCCCCC-ccCCCCCCCcEEECcCCcCccCCC---cccccCcccEEECCCCcCcCCCCcccccccc
Q 047927 306 KNLKNLSRVEFYLCNFNGPIP-TSMSDLSQLVYLDMSFNHFSGPIP---SLHMFRNLAYLDLSYNIFTGGISSIGWEQLL 381 (1005)
Q Consensus 306 ~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~---~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~ 381 (1005)
.++.+|+++.+.++....... .....|++++.||++.|-+....+ -...+++|+.|+++.|.+........-..++
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 467788888888876653221 245567888888888886653211 1233445666666666554322222122334
Q ss_pred cccEEEcCCCcCCCccCccCCCCCCCCEEeCcCcccccccccccccccccCCEEeCCCCccCCCCCccccCcCCCcEEEC
Q 047927 382 NLFHVDLSHNNLGGSIPQSLFELPMVQHLLLADNQFDGHVTEISNASSSLLDTLDLSDNNLEGPIPLSFFELKNLKILLL 461 (1005)
Q Consensus 382 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 461 (1005)
+|+.|.++.|.++..--......+|+++.|++..|.....-......+..|+.|+|
T Consensus 198 ------------------------~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdL 253 (505)
T KOG3207|consen 198 ------------------------HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDL 253 (505)
T ss_pred ------------------------hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccc
Confidence 44444444444431111112223445555555555322122222334455666666
Q ss_pred CCCcceeccchhHHHhcCCCCeEeccCCeeeEecCCcc-----cccCcccceEEcCCccCcCCCC---CCCCCceeEEEC
Q 047927 462 SSNKFVGTIELDAIQRLRNLFRLDLSYNRLAVVAGSSV-----YCFPPLLTTLSLASCKLSAIPN---LRKQTKLYHLDL 533 (1005)
Q Consensus 462 ~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~-----~~~~~~L~~L~L~~n~l~~l~~---l~~l~~L~~L~L 533 (1005)
++|++...-.......++.|..|+++.+.++.+..... ....++|+.|++..|++..++. +..+++|+.|.+
T Consensus 254 s~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~ 333 (505)
T KOG3207|consen 254 SNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRI 333 (505)
T ss_pred cCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhc
Confidence 66665432222344556666666666666655543332 2334456667776666655554 444556666666
Q ss_pred cCCcCC
Q 047927 534 SDNQIS 539 (1005)
Q Consensus 534 s~n~l~ 539 (1005)
..|.+.
T Consensus 334 ~~n~ln 339 (505)
T KOG3207|consen 334 TLNYLN 339 (505)
T ss_pred cccccc
Confidence 666665
No 34
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.91 E-value=3.9e-10 Score=108.01 Aligned_cols=127 Identities=28% Similarity=0.333 Sum_probs=38.9
Q ss_pred hccCCCCeEEccCccccccCCchhh-hcCcccccEEECCCCcCCccccCccCCCCCccEEeCCCCeecccCcccc-cCCC
Q 047927 644 CNATNLLVLDLSYNYLSGMIPTCLI-NMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSL-ANCS 721 (1005)
Q Consensus 644 ~~l~~L~~L~Ls~N~l~~~~p~~~~-~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l-~~l~ 721 (1005)
-++..++.|+|++|.|+. + +.+. .+. +|+.|++++|.++... .+..++.|++|++++|+|+.. ++.+ ..++
T Consensus 16 ~n~~~~~~L~L~~n~I~~-I-e~L~~~l~--~L~~L~Ls~N~I~~l~--~l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp 88 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQIST-I-ENLGATLD--KLEVLDLSNNQITKLE--GLPGLPRLKTLDLSNNRISSI-SEGLDKNLP 88 (175)
T ss_dssp ----------------------S--TT-T--T--EEE-TTS--S--T--T----TT--EEE--SS---S--CHHHHHH-T
T ss_pred cccccccccccccccccc-c-cchhhhhc--CCCEEECCCCCCcccc--CccChhhhhhcccCCCCCCcc-ccchHHhCC
Confidence 345567777777777763 2 2233 344 6777777777776542 466677777777777777743 3333 3567
Q ss_pred CCCEEECCCCcCCCCcc-hhhhcCCCCcEEecCCCcCCcccC-CCCCCCCCCCccEEE
Q 047927 722 VLEILDLGNNQFDDTFP-CWVKNASRLHVLILRSNNFFGNIS-CPRYNVSWPMLQIID 777 (1005)
Q Consensus 722 ~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~~~l~~L~~L~ 777 (1005)
+|+.|++++|+|....- ..++.+++|+.|+|.+|+++..-. -...+..+|+|+.||
T Consensus 89 ~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD 146 (175)
T PF14580_consen 89 NLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLD 146 (175)
T ss_dssp T--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEET
T ss_pred cCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeC
Confidence 77777777777764322 345566777777777776653210 011234456666655
No 35
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.87 E-value=2.7e-09 Score=102.28 Aligned_cols=127 Identities=28% Similarity=0.320 Sum_probs=46.7
Q ss_pred CEEEEEcCCCCcccccCCCcccc-cccccceeecCCccCCCCCCCCcccCCCCCcEEEcccCCCcCCCcccc-cCCCCCc
Q 047927 55 RVIGLDLSEESISAGIDNSSSLF-SLKYLQSLNLAFNMFNATEIPSGLGNLTNLTTLNLSNAGFAGQIPIQV-SGMTRLV 132 (1005)
Q Consensus 55 ~v~~L~L~~~~l~~~~~~~~~l~-~l~~L~~L~Ls~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~l-~~l~~L~ 132 (1005)
+++.|+|.|+.+.. ...+. .+.+|+.|||++|.+.. + +.+..+++|++|++++|+++ .++..+ ..+++|+
T Consensus 20 ~~~~L~L~~n~I~~----Ie~L~~~l~~L~~L~Ls~N~I~~--l-~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~ 91 (175)
T PF14580_consen 20 KLRELNLRGNQIST----IENLGATLDKLEVLDLSNNQITK--L-EGLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQ 91 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S-----TT----TT--EEE--SS----S-CHHHHHH-TT--
T ss_pred cccccccccccccc----ccchhhhhcCCCEEECCCCCCcc--c-cCccChhhhhhcccCCCCCC-ccccchHHhCCcCC
Confidence 57778888887764 34455 56788888888887754 3 35667788888888888876 444444 3578888
Q ss_pred EEeCCCcccccCccccCCCChhhhhhcCccCceeecCCccCCCchhhHHHHHhccCCCccEEEcc
Q 047927 133 TLDLSGMYFVRAPLKLENPNLSGLLQNLAELRELYLDGVNISAPGIEWCQALSSLVPKLQVLSLS 197 (1005)
Q Consensus 133 ~L~ls~n~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~L~~L~L~ 197 (1005)
+|++++|++.+... ...+..+++|++|++.+|.+..........+..+ |+|+.||-.
T Consensus 92 ~L~L~~N~I~~l~~-------l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~l-P~Lk~LD~~ 148 (175)
T PF14580_consen 92 ELYLSNNKISDLNE-------LEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKL-PSLKVLDGQ 148 (175)
T ss_dssp EEE-TTS---SCCC-------CGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH--TT-SEETTE
T ss_pred EEECcCCcCCChHH-------hHHHHcCCCcceeeccCCcccchhhHHHHHHHHc-ChhheeCCE
Confidence 88888887755321 2346677777788887777765543333333333 777777654
No 36
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.86 E-value=1.5e-09 Score=130.52 Aligned_cols=107 Identities=27% Similarity=0.366 Sum_probs=79.8
Q ss_pred CCEEEEEcCCCC--cccccCCCcccccccccceeecCCccCCCCCCCCcccCCCCCcEEEcccCCCcCCCcccccCCCCC
Q 047927 54 GRVIGLDLSEES--ISAGIDNSSSLFSLKYLQSLNLAFNMFNATEIPSGLGNLTNLTTLNLSNAGFAGQIPIQVSGMTRL 131 (1005)
Q Consensus 54 ~~v~~L~L~~~~--l~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~l~~l~~L 131 (1005)
..++.|=+.++. +.... ...|..+++||+|||++|.-. .++|+.|+.+.+||||+++++.+. .+|.++++|++|
T Consensus 545 ~~L~tLll~~n~~~l~~is--~~ff~~m~~LrVLDLs~~~~l-~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L 620 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLLEIS--GEFFRSLPLLRVLDLSGNSSL-SKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKL 620 (889)
T ss_pred CccceEEEeecchhhhhcC--HHHHhhCcceEEEECCCCCcc-CcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhh
Confidence 356677776664 22211 234778999999999986543 449999999999999999999987 899999999999
Q ss_pred cEEeCCCcccccCccccCCCChhhhhhcCccCceeecCCcc
Q 047927 132 VTLDLSGMYFVRAPLKLENPNLSGLLQNLAELRELYLDGVN 172 (1005)
Q Consensus 132 ~~L~ls~n~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 172 (1005)
.+|++..+...... ......+++||+|.+....
T Consensus 621 ~~Lnl~~~~~l~~~--------~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 621 IYLNLEVTGRLESI--------PGILLELQSLRVLRLPRSA 653 (889)
T ss_pred heeccccccccccc--------cchhhhcccccEEEeeccc
Confidence 99999976532211 3346668889988887654
No 37
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.85 E-value=2.5e-09 Score=76.37 Aligned_cols=40 Identities=40% Similarity=0.787 Sum_probs=30.8
Q ss_pred HHHHHHHHHHhhhCCCCCCCcccccCCCCC--CCCcccceeEEC
Q 047927 10 SDQQSLLLQMKSRLTFDSSVSFRMVQWSQS--NDCCTWSGVDCD 51 (1005)
Q Consensus 10 ~~~~~~ll~~k~~~~~~~~~~~~~~~w~~~--~~~c~w~gv~c~ 51 (1005)
++|++||++||+++..++. +.+.+|+.+ .+||+|.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~--~~l~~W~~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPS--GVLSSWNPSSDSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC---CCCTT--TT--S-CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccC--cccccCCCcCCCCCeeeccEEeC
Confidence 6899999999999986563 589999886 799999999996
No 38
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.83 E-value=1.1e-09 Score=107.97 Aligned_cols=130 Identities=37% Similarity=0.419 Sum_probs=98.5
Q ss_pred cCCEEeCCCCccCCCCCccccCcCCCcEEECCCCcceeccchhHHHhcCCCCeEeccCCeeeEecCCcccccCcccceEE
Q 047927 431 LLDTLDLSDNNLEGPIPLSFFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRLAVVAGSSVYCFPPLLTTLS 510 (1005)
Q Consensus 431 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ 510 (1005)
.|+++|+++|.|+ .+..++.-.|.++.|++++|.+. .+. .++.+++|+.||+++|.++.+.++. .-..++++|.
T Consensus 285 ~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~--nLa~L~~L~~LDLS~N~Ls~~~Gwh--~KLGNIKtL~ 358 (490)
T KOG1259|consen 285 ELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQ--NLAELPQLQLLDLSGNLLAECVGWH--LKLGNIKTLK 358 (490)
T ss_pred hhhhccccccchh-hhhhhhhhccceeEEecccccee-eeh--hhhhcccceEeecccchhHhhhhhH--hhhcCEeeee
Confidence 3777888888777 56667777889999999999987 443 4888999999999999888776553 2234578888
Q ss_pred cCCccCcCCCCCCCCCceeEEECcCCcCCCCCChhhhhhcCCcccEEeCCCCcccCCCCCCccccCCcccEEEeccCccc
Q 047927 511 LASCKLSAIPNLRKQTKLYHLDLSDNQISGEIPNWLWKIGKDSFNHLNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQ 590 (1005)
Q Consensus 511 L~~n~l~~l~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~ 590 (1005)
+++|.|.++.+++.+-+|..||+++|+|.. +..-..++++|.|+.+.+.+|++.
T Consensus 359 La~N~iE~LSGL~KLYSLvnLDl~~N~Ie~--------------------------ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 359 LAQNKIETLSGLRKLYSLVNLDLSSNQIEE--------------------------LDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred hhhhhHhhhhhhHhhhhheeccccccchhh--------------------------HHHhcccccccHHHHHhhcCCCcc
Confidence 888888888888888888888888887752 111224667788999999998887
Q ss_pred cc
Q 047927 591 GK 592 (1005)
Q Consensus 591 ~~ 592 (1005)
+.
T Consensus 413 ~~ 414 (490)
T KOG1259|consen 413 GS 414 (490)
T ss_pred cc
Confidence 53
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.78 E-value=4.2e-09 Score=82.72 Aligned_cols=60 Identities=43% Similarity=0.563 Sum_probs=40.4
Q ss_pred CCCEEECCCCcCcccCchhhhcCCCCCEEeCCCCcCcccCcccccCCCCCCeEEccCCcc
Q 047927 869 SLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLNLSYNHL 928 (1005)
Q Consensus 869 ~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l 928 (1005)
+|++|++++|+++...+..|..+++|++||+++|+++...|..|.++++|++|++++|+|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 466666777766654445666677777777777777666666677777777777777664
No 40
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.75 E-value=1.1e-09 Score=123.95 Aligned_cols=244 Identities=22% Similarity=0.215 Sum_probs=143.3
Q ss_pred CceEEEEecCCcccccCChhhhccCCCCeEEccCccccccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCccEE
Q 047927 623 SLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTL 702 (1005)
Q Consensus 623 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 702 (1005)
..+..+.+..|.+.. +-..++.+++|+.|++.+|+|... ...+..+. +|++|++++|.|+.+.+ +..++.|+.|
T Consensus 72 ~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~--~L~~L~ls~N~I~~i~~--l~~l~~L~~L 145 (414)
T KOG0531|consen 72 TSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLV--NLQVLDLSFNKITKLEG--LSTLTLLKEL 145 (414)
T ss_pred HhHHhhccchhhhhh-hhcccccccceeeeeccccchhhc-ccchhhhh--cchheeccccccccccc--hhhccchhhh
Confidence 334444455555543 223355666777777777777632 22244444 67777777777765533 4445557777
Q ss_pred eCCCCeecccCcccccCCCCCCEEECCCCcCCCCcc-hhhhcCCCCcEEecCCCcCCcccCCCCCCCCCCCccEEEccCC
Q 047927 703 DLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFP-CWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASN 781 (1005)
Q Consensus 703 ~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N 781 (1005)
++++|.|+.. ..+..++.|+.+++++|++...-+ . ...+.+++.+.+.+|.+.. ...+..+..+..+++..|
T Consensus 146 ~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~----i~~~~~~~~l~~~~l~~n 218 (414)
T KOG0531|consen 146 NLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIRE----IEGLDLLKKLVLLSLLDN 218 (414)
T ss_pred eeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhc----ccchHHHHHHHHhhcccc
Confidence 7777777743 345556777777777777765544 2 4566666666666666542 222333333333344444
Q ss_pred cccccCChHHHhhhhhhhhccCCchhhhchhhheecccccccccccEEEEEcchHHHHHHhcc--cceEEECCCCeeecc
Q 047927 782 KFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILN--IFTSIDFSRNNFEGP 859 (1005)
Q Consensus 782 ~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~L~Ls~N~l~g~ 859 (1005)
.++-.-+.. ... +++.+++++|.+. .
T Consensus 219 ~i~~~~~l~---------------------------------------------------~~~~~~L~~l~l~~n~i~-~ 246 (414)
T KOG0531|consen 219 KISKLEGLN---------------------------------------------------ELVMLHLRELYLSGNRIS-R 246 (414)
T ss_pred cceeccCcc---------------------------------------------------cchhHHHHHHhcccCccc-c
Confidence 443111100 011 2567788888887 4
Q ss_pred CcccccCCCCCCEEECCCCcCcccCchhhhcCCCCCEEeCCCCcCccc---Cccc-ccCCCCCCeEEccCCcccccCC
Q 047927 860 IPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGT---IPAQ-LASLNFLSVLNLSYNHLVGRIP 933 (1005)
Q Consensus 860 ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~~~---ip~~-l~~l~~L~~L~ls~N~l~g~ip 933 (1005)
+|+.+..+..+..|++++|++... ..+.....+..+.++.|.+... .... ......+....+.+|+.....+
T Consensus 247 ~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (414)
T KOG0531|consen 247 SPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKISS 322 (414)
T ss_pred ccccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhccccccccccccccccccCccccccc
Confidence 446677788888888888888753 2345566677777777776522 1221 5666778888888888877655
No 41
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.70 E-value=1.2e-08 Score=80.04 Aligned_cols=59 Identities=36% Similarity=0.514 Sum_probs=33.3
Q ss_pred cccEEECCCCcCCccccCccCCCCCccEEeCCCCeecccCcccccCCCCCCEEECCCCc
Q 047927 674 QLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQ 732 (1005)
Q Consensus 674 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 732 (1005)
+|++|++++|+++...+..|.++++|++|++++|+++...|+.|.++++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 45555555555555555555555555555555555555555555555555555555554
No 42
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.68 E-value=1.3e-08 Score=122.63 Aligned_cols=160 Identities=29% Similarity=0.296 Sum_probs=101.5
Q ss_pred CCEEEEEcCCCCcccccCCCcccccccccceeecCCccCCCCCCCCcccCCCCCcEEEcccCCCcCCCcccccCCCCCcE
Q 047927 54 GRVIGLDLSEESISAGIDNSSSLFSLKYLQSLNLAFNMFNATEIPSGLGNLTNLTTLNLSNAGFAGQIPIQVSGMTRLVT 133 (1005)
Q Consensus 54 ~~v~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~l~~l~~L~~ 133 (1005)
..+++|||+++.-.+.+ |.+++.+-|||||+|+++.+. ++|..+++|+.|.|||+..+.....+|..+..|.+||+
T Consensus 571 ~~LrVLDLs~~~~l~~L--P~~I~~Li~LryL~L~~t~I~--~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~ 646 (889)
T KOG4658|consen 571 PLLRVLDLSGNSSLSKL--PSSIGELVHLRYLDLSDTGIS--HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRV 646 (889)
T ss_pred cceEEEECCCCCccCcC--ChHHhhhhhhhcccccCCCcc--ccchHHHHHHhhheeccccccccccccchhhhcccccE
Confidence 67999999987655555 899999999999999999986 49999999999999999999876666766677999999
Q ss_pred EeCCCcccccCccccCCCChhhhhhcCccCceeecCCccCCCchhhHHHHHhccCCCccEEEccCCCCCCCCCccccCCC
Q 047927 134 LDLSGMYFVRAPLKLENPNLSGLLQNLAELRELYLDGVNISAPGIEWCQALSSLVPKLQVLSLSGCFLSGPVDPSLSNLR 213 (1005)
Q Consensus 134 L~ls~n~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~L~~L~L~~n~~~~~~~~~l~~l~ 213 (1005)
|.+...... ........+.++.+|+.+....... ...+.+..+..+....+.+.+.++. ....+..+..+.
T Consensus 647 L~l~~s~~~------~~~~~l~el~~Le~L~~ls~~~~s~--~~~e~l~~~~~L~~~~~~l~~~~~~-~~~~~~~~~~l~ 717 (889)
T KOG4658|consen 647 LRLPRSALS------NDKLLLKELENLEHLENLSITISSV--LLLEDLLGMTRLRSLLQSLSIEGCS-KRTLISSLGSLG 717 (889)
T ss_pred EEeeccccc------cchhhHHhhhcccchhhheeecchh--HhHhhhhhhHHHHHHhHhhhhcccc-cceeeccccccc
Confidence 999865411 1122233455566666555533211 0011111111111112222222221 112334556666
Q ss_pred CCcEEECCCCCCC
Q 047927 214 SLSVIRLDMNDLY 226 (1005)
Q Consensus 214 ~L~~L~l~~n~~~ 226 (1005)
+|+.|.+.++.+.
T Consensus 718 ~L~~L~i~~~~~~ 730 (889)
T KOG4658|consen 718 NLEELSILDCGIS 730 (889)
T ss_pred CcceEEEEcCCCc
Confidence 7777776666554
No 43
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.62 E-value=4.7e-09 Score=118.71 Aligned_cols=219 Identities=25% Similarity=0.275 Sum_probs=133.3
Q ss_pred ccCCCCeEEccCccccccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCccEEeCCCCeecccCcccccCCCCCC
Q 047927 645 NATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLE 724 (1005)
Q Consensus 645 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~ 724 (1005)
.+..++.+.+..|.+.. +-..+..+. +|+.|++.+|+|..+... +..+++|++|++++|.|+.+ ..+..++.|+
T Consensus 70 ~l~~l~~l~l~~n~i~~-~~~~l~~~~--~l~~l~l~~n~i~~i~~~-l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~ 143 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAK-ILNHLSKLK--SLEALDLYDNKIEKIENL-LSSLVNLQVLDLSFNKITKL--EGLSTLTLLK 143 (414)
T ss_pred HhHhHHhhccchhhhhh-hhccccccc--ceeeeeccccchhhcccc-hhhhhcchheeccccccccc--cchhhccchh
Confidence 45566666677777653 222344444 667777777776644321 45566677777777777654 2355555666
Q ss_pred EEECCCCcCCCCcchhhhcCCCCcEEecCCCcCCcccCCC-CCCCCCCCccEEEccCCcccccCChHHHhhhhhhhhccC
Q 047927 725 ILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCP-RYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEG 803 (1005)
Q Consensus 725 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~-~~~~~l~~L~~L~ls~N~~~~~~p~~~~~~l~~~~~~~~ 803 (1005)
.|++++|+++.. ..+..++.|+.+++++|++...- + . ...+.+++.+++++|.+.-.-...
T Consensus 144 ~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie--~~~-~~~~~~l~~l~l~~n~i~~i~~~~------------- 205 (414)
T KOG0531|consen 144 ELNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIE--NDE-LSELISLEELDLGGNSIREIEGLD------------- 205 (414)
T ss_pred hheeccCcchhc--cCCccchhhhcccCCcchhhhhh--hhh-hhhccchHHHhccCCchhcccchH-------------
Confidence 677777766532 33444666666666666665321 1 1 345556666666666554211110
Q ss_pred CchhhhchhhheecccccccccccEEEEEcchHHHHHHhcccceEEECCCCeeeccCcccccCCC--CCCEEECCCCcCc
Q 047927 804 RSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQ--SLCALNLSHNALT 881 (1005)
Q Consensus 804 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~--~L~~L~Ls~N~l~ 881 (1005)
.+..+..+++..|.++-.-+ +..+. .|+.+++++|++.
T Consensus 206 --------------------------------------~~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~ 245 (414)
T KOG0531|consen 206 --------------------------------------LLKKLVLLSLLDNKISKLEG--LNELVMLHLRELYLSGNRIS 245 (414)
T ss_pred --------------------------------------HHHHHHHhhcccccceeccC--cccchhHHHHHHhcccCccc
Confidence 12223344778888774322 22233 3889999999998
Q ss_pred ccCchhhhcCCCCCEEeCCCCcCcccCcccccCCCCCCeEEccCCcccc
Q 047927 882 GSIPSLIGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLNLSYNHLVG 930 (1005)
Q Consensus 882 g~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g 930 (1005)
.+|..+..+..+..||+++|+++..- .+.....+..+..+.|.+..
T Consensus 246 -~~~~~~~~~~~l~~l~~~~n~~~~~~--~~~~~~~~~~~~~~~~~~~~ 291 (414)
T KOG0531|consen 246 -RSPEGLENLKNLPVLDLSSNRISNLE--GLERLPKLSELWLNDNKLAL 291 (414)
T ss_pred -cccccccccccccccchhhccccccc--cccccchHHHhccCcchhcc
Confidence 56577788999999999999998553 34556677788888888763
No 44
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=1.9e-09 Score=106.52 Aligned_cols=112 Identities=23% Similarity=0.264 Sum_probs=80.0
Q ss_pred ccceeecCCccCCCCCCCCcccCCCCCcEEEcccCCCcCCCcccccCCCCCcEEeCCCcccccCccccCCCChhhhhhcC
Q 047927 81 YLQSLNLAFNMFNATEIPSGLGNLTNLTTLNLSNAGFAGQIPIQVSGMTRLVTLDLSGMYFVRAPLKLENPNLSGLLQNL 160 (1005)
Q Consensus 81 ~L~~L~Ls~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~l~~l 160 (1005)
.|++||||...++...+...+..|.+|+.|.|.++++++.+-..+++-.+|+.|+++.+. ++......-.+.++
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~s------G~t~n~~~ll~~sc 259 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCS------GFTENALQLLLSSC 259 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeecccccc------ccchhHHHHHHHhh
Confidence 588899988887765555667788889999999998888787888888889999988763 23334455567888
Q ss_pred ccCceeecCCccCCCchhhHHHHHhccCCCccEEEccCCC
Q 047927 161 AELRELYLDGVNISAPGIEWCQALSSLVPKLQVLSLSGCF 200 (1005)
Q Consensus 161 ~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~L~~L~L~~n~ 200 (1005)
+.|.+|+++.+......+... .....++|+.|+++++.
T Consensus 260 s~L~~LNlsWc~l~~~~Vtv~--V~hise~l~~LNlsG~r 297 (419)
T KOG2120|consen 260 SRLDELNLSWCFLFTEKVTVA--VAHISETLTQLNLSGYR 297 (419)
T ss_pred hhHhhcCchHhhccchhhhHH--HhhhchhhhhhhhhhhH
Confidence 888888888876655433221 22334677777777653
No 45
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.47 E-value=8.8e-09 Score=101.97 Aligned_cols=158 Identities=25% Similarity=0.379 Sum_probs=78.3
Q ss_pred hhhcCccCceeecCCccCCCchhhHHHHHhccCCCccEEEccCCC-CCCCC-CccccCCCCCcEEECCCCCCCCCcchh-
Q 047927 156 LLQNLAELRELYLDGVNISAPGIEWCQALSSLVPKLQVLSLSGCF-LSGPV-DPSLSNLRSLSVIRLDMNDLYSPVPEF- 232 (1005)
Q Consensus 156 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~L~~L~L~~n~-~~~~~-~~~l~~l~~L~~L~l~~n~~~~~~p~~- 232 (1005)
.+..+++|+.|.+.|+.+.+.-... +... .+|+.++++.|. ++... .--+.+++.|+.|+++++.+....-..
T Consensus 205 iLs~C~kLk~lSlEg~~LdD~I~~~---iAkN-~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~ 280 (419)
T KOG2120|consen 205 ILSQCSKLKNLSLEGLRLDDPIVNT---IAKN-SNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVA 280 (419)
T ss_pred HHHHHHhhhhccccccccCcHHHHH---Hhcc-ccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHH
Confidence 3444455555555554444332221 2222 455555555542 11110 012445666666666666554322111
Q ss_pred ccC-CCCCcEEEccCCC--CCc-cCccccCCCCCCCEEeCCCCCCCCC-CCCcccCCCCCcEEEcccccccccCchh---
Q 047927 233 LAD-FSNLTSLYLSSCG--LHG-AFPEKILQLPTLETLDLSYNELLQG-SLPDFHQNLSLETLILSATNFSGILPDS--- 304 (1005)
Q Consensus 233 l~~-l~~L~~L~L~~n~--l~~-~~p~~l~~l~~L~~L~Ls~n~~~~~-~~~~~~~~~~L~~L~L~~n~l~~~~p~~--- 304 (1005)
+.. -++|+.|+++++. +.. .+..--.++++|.+||||+|..... -+..|.+++.|++|.++.|. ++.|..
T Consensus 281 V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY--~i~p~~~~~ 358 (419)
T KOG2120|consen 281 VAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCY--DIIPETLLE 358 (419)
T ss_pred HhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhc--CCChHHeee
Confidence 111 2566677777663 111 1112224577777777777643332 22345667777777777764 344443
Q ss_pred hccCCCCCEEeecCC
Q 047927 305 IKNLKNLSRVEFYLC 319 (1005)
Q Consensus 305 l~~l~~L~~L~l~~n 319 (1005)
+...+.|.+|++.++
T Consensus 359 l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 359 LNSKPSLVYLDVFGC 373 (419)
T ss_pred eccCcceEEEEeccc
Confidence 455677788877665
No 46
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.25 E-value=3.5e-08 Score=86.35 Aligned_cols=104 Identities=27% Similarity=0.390 Sum_probs=55.1
Q ss_pred cceEEECCCCeeeccCccccc-CCCCCCEEECCCCcCcccCchhhhcCCCCCEEeCCCCcCcccCcccccCCCCCCeEEc
Q 047927 845 IFTSIDFSRNNFEGPIPEEMG-LLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLNL 923 (1005)
Q Consensus 845 ~l~~L~Ls~N~l~g~ip~~~~-~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~l 923 (1005)
.++.++||+|.|.. .|+.|. ..+..+.|||++|.|+ .+|+++..++.|+.|+++.|.+. ..|..+..|.+|-+||.
T Consensus 54 el~~i~ls~N~fk~-fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds 130 (177)
T KOG4579|consen 54 ELTKISLSDNGFKK-FPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDS 130 (177)
T ss_pred eEEEEecccchhhh-CCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcC
Confidence 34555666666653 233332 3345566666666666 56666666666666666666665 44555555666666666
Q ss_pred cCCcccccCCCCCcccccccccccCCCCC
Q 047927 924 SYNHLVGRIPTSTQLQSFLATSFEGNDRL 952 (1005)
Q Consensus 924 s~N~l~g~ip~~~~~~~~~~~~~~gn~~l 952 (1005)
-+|.+. +||...-+.+..+..-.||.++
T Consensus 131 ~~na~~-eid~dl~~s~~~al~~lgnepl 158 (177)
T KOG4579|consen 131 PENARA-EIDVDLFYSSLPALIKLGNEPL 158 (177)
T ss_pred CCCccc-cCcHHHhccccHHHHHhcCCcc
Confidence 655542 4554432333333333455443
No 47
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.25 E-value=6e-08 Score=101.01 Aligned_cols=211 Identities=19% Similarity=0.105 Sum_probs=92.9
Q ss_pred CCEEEEEcCCCCcccccCCCcccccccccceeecCCcc-CCCCCCCCcccCCCCCcEEEcccCC-CcCCCcccc-cCCCC
Q 047927 54 GRVIGLDLSEESISAGIDNSSSLFSLKYLQSLNLAFNM-FNATEIPSGLGNLTNLTTLNLSNAG-FAGQIPIQV-SGMTR 130 (1005)
Q Consensus 54 ~~v~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~Ls~~~-~~~~~lp~~l~~l~~L~~L~Ls~n~-~~~~lp~~l-~~l~~ 130 (1005)
++++.|++.|+.-.+.-..-.....+++++.|++.++. +++..+-..-..|.+|++|++..|. ++...-..+ ..+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 45555666554433211101122345566666665553 2222111112345666666666642 222222222 24666
Q ss_pred CcEEeCCCcccccCccccCCCChhhhhhcCccCceeecCCccCCCchhhHHHHHhccCCCccEEEccCCC-CCCCCCc-c
Q 047927 131 LVTLDLSGMYFVRAPLKLENPNLSGLLQNLAELRELYLDGVNISAPGIEWCQALSSLVPKLQVLSLSGCF-LSGPVDP-S 208 (1005)
Q Consensus 131 L~~L~ls~n~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~L~~L~L~~n~-~~~~~~~-~ 208 (1005)
|++++++++.- +....+....+++..++.+.+.|+ ...+.+.+..+...++.+.++++..|. ++++.-. .
T Consensus 218 L~~lNlSwc~q------i~~~gv~~~~rG~~~l~~~~~kGC--~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i 289 (483)
T KOG4341|consen 218 LKYLNLSWCPQ------ISGNGVQALQRGCKELEKLSLKGC--LELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLI 289 (483)
T ss_pred HHHhhhccCch------hhcCcchHHhccchhhhhhhhccc--ccccHHHHHHHhccChHhhccchhhhccccchHHHHH
Confidence 66666666531 122223334455555555555543 222333343343333455556655543 2221110 1
Q ss_pred ccCCCCCcEEECCCCCCCCCcc-hh-ccCCCCCcEEEccCCC-CCccCccccC-CCCCCCEEeCCCCC
Q 047927 209 LSNLRSLSVIRLDMNDLYSPVP-EF-LADFSNLTSLYLSSCG-LHGAFPEKIL-QLPTLETLDLSYNE 272 (1005)
Q Consensus 209 l~~l~~L~~L~l~~n~~~~~~p-~~-l~~l~~L~~L~L~~n~-l~~~~p~~l~-~l~~L~~L~Ls~n~ 272 (1005)
-..+..|++++.+++...+..+ .. -.+..+|++|.++.|+ +++.-...++ +++.|+.+++..+.
T Consensus 290 ~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~ 357 (483)
T KOG4341|consen 290 ACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECG 357 (483)
T ss_pred hhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccc
Confidence 1235566666666554322211 11 2335666666666663 3332222222 34556666665553
No 48
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.18 E-value=2.8e-07 Score=90.35 Aligned_cols=219 Identities=19% Similarity=0.196 Sum_probs=127.0
Q ss_pred CCEEEEEcCCCCcccccC--CCcccccccccceeecCCccCC--CCCCC-------CcccCCCCCcEEEcccCCCcCCCc
Q 047927 54 GRVIGLDLSEESISAGID--NSSSLFSLKYLQSLNLAFNMFN--ATEIP-------SGLGNLTNLTTLNLSNAGFAGQIP 122 (1005)
Q Consensus 54 ~~v~~L~L~~~~l~~~~~--~~~~l~~l~~L~~L~Ls~~~~~--~~~lp-------~~l~~l~~L~~L~Ls~n~~~~~lp 122 (1005)
..++.+|||||.+..... ....+.+-++|+..+++.-... ..++| +.+-+|++|+..+||+|.|....|
T Consensus 30 d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~ 109 (388)
T COG5238 30 DELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFP 109 (388)
T ss_pred cceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccc
Confidence 457888888888763220 0234556677888888753221 11233 335567888888888888876666
Q ss_pred cc----ccCCCCCcEEeCCCcccccCccccCCC------ChhhhhhcCccCceeecCCccCCCchhhHHHHHhccCCCcc
Q 047927 123 IQ----VSGMTRLVTLDLSGMYFVRAPLKLENP------NLSGLLQNLAELRELYLDGVNISAPGIEWCQALSSLVPKLQ 192 (1005)
Q Consensus 123 ~~----l~~l~~L~~L~ls~n~~~~~~~~~~~~------~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~L~ 192 (1005)
.. |++-+.|+||.+++|.+...... .+. ........-+.|+...+..|.+...+..........-.+|+
T Consensus 110 e~L~d~is~~t~l~HL~l~NnGlGp~aG~-rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk 188 (388)
T COG5238 110 EELGDLISSSTDLVHLKLNNNGLGPIAGG-RIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLK 188 (388)
T ss_pred hHHHHHHhcCCCceeEEeecCCCCccchh-HHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCce
Confidence 43 45667888888888865332111 000 11122445677777777777776555544444332225777
Q ss_pred EEEccCCCCCCCCC-----ccccCCCCCcEEECCCCCCCCC----cchhccCCCCCcEEEccCCCCCccCcccc----C-
Q 047927 193 VLSLSGCFLSGPVD-----PSLSNLRSLSVIRLDMNDLYSP----VPEFLADFSNLTSLYLSSCGLHGAFPEKI----L- 258 (1005)
Q Consensus 193 ~L~L~~n~~~~~~~-----~~l~~l~~L~~L~l~~n~~~~~----~p~~l~~l~~L~~L~L~~n~l~~~~p~~l----~- 258 (1005)
.+.+..|.|....- ..+..+.+|++|++..|.++-. +...+..++.|++|.+.+|-++.....++ .
T Consensus 189 ~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e 268 (388)
T COG5238 189 EVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNE 268 (388)
T ss_pred eEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhh
Confidence 77777776553211 1234567777777777766432 23345556667777777776553322222 1
Q ss_pred -CCCCCCEEeCCCCCC
Q 047927 259 -QLPTLETLDLSYNEL 273 (1005)
Q Consensus 259 -~l~~L~~L~Ls~n~~ 273 (1005)
..++|+.|...+|.+
T Consensus 269 ~~~p~l~~L~~~Yne~ 284 (388)
T COG5238 269 KFVPNLMPLPGDYNER 284 (388)
T ss_pred hcCCCccccccchhhh
Confidence 246666666666654
No 49
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.17 E-value=4.7e-07 Score=88.80 Aligned_cols=168 Identities=21% Similarity=0.212 Sum_probs=96.2
Q ss_pred hhhhcCccCceeecCCccCCCchhhHHHHHhccCCCccEEEccCCCC---CCCCC-------ccccCCCCCcEEECCCCC
Q 047927 155 GLLQNLAELRELYLDGVNISAPGIEWCQALSSLVPKLQVLSLSGCFL---SGPVD-------PSLSNLRSLSVIRLDMND 224 (1005)
Q Consensus 155 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~L~~L~L~~n~~---~~~~~-------~~l~~l~~L~~L~l~~n~ 224 (1005)
..+..+..+++++++||.|.....+|+........+|+..+++.-.. .+.++ .++-+|++|+..+++.|.
T Consensus 24 eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNA 103 (388)
T COG5238 24 EELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNA 103 (388)
T ss_pred HHHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccc
Confidence 34555777778888888887777777655444447788777775321 12222 245678888888888888
Q ss_pred CCCCcch----hccCCCCCcEEEccCCCCCccCcccc-------------CCCCCCCEEeCCCCCCCCCCCCcc----cC
Q 047927 225 LYSPVPE----FLADFSNLTSLYLSSCGLHGAFPEKI-------------LQLPTLETLDLSYNELLQGSLPDF----HQ 283 (1005)
Q Consensus 225 ~~~~~p~----~l~~l~~L~~L~L~~n~l~~~~p~~l-------------~~l~~L~~L~Ls~n~~~~~~~~~~----~~ 283 (1005)
+....|. .+++-+.|++|.+++|++.-.--..+ ..-|.|++.....|++..++...+ ..
T Consensus 104 fg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~s 183 (388)
T COG5238 104 FGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLES 183 (388)
T ss_pred cCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHh
Confidence 8766554 34566888888888887642211112 234566666666666544333211 11
Q ss_pred CCCCcEEEcccccccccC-----chhhccCCCCCEEeecCCccC
Q 047927 284 NLSLETLILSATNFSGIL-----PDSIKNLKNLSRVEFYLCNFN 322 (1005)
Q Consensus 284 ~~~L~~L~L~~n~l~~~~-----p~~l~~l~~L~~L~l~~n~~~ 322 (1005)
-..|+++.+..|.|.-.. -..+..+.+|+.|++.+|.++
T Consensus 184 h~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft 227 (388)
T COG5238 184 HENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFT 227 (388)
T ss_pred hcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchh
Confidence 235555555555443110 111233455555555555544
No 50
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.16 E-value=1.2e-07 Score=105.05 Aligned_cols=129 Identities=36% Similarity=0.382 Sum_probs=103.0
Q ss_pred cCCEEeCCCCccCCCCCccccCcCCCcEEECCCCcceeccchhHHHhcCCCCeEeccCCeeeEecCCcccccCcccceEE
Q 047927 431 LLDTLDLSDNNLEGPIPLSFFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRLAVVAGSSVYCFPPLLTTLS 510 (1005)
Q Consensus 431 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ 510 (1005)
.|...+.++|.+. ....++.-++.++.|+|++|+++ .+ +.+..++.|++||+++|.+..++....... .|+.|.
T Consensus 165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~-~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc--~L~~L~ 238 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFT-KV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGC--KLQLLN 238 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhh-hh--HHHHhcccccccccccchhccccccchhhh--hheeee
Confidence 4777888888887 56677888899999999999997 33 478999999999999999999887654332 399999
Q ss_pred cCCccCcCCCCCCCCCceeEEECcCCcCCCCCC-hhhhhhcCCcccEEeCCCCcccCC
Q 047927 511 LASCKLSAIPNLRKQTKLYHLDLSDNQISGEIP-NWLWKIGKDSFNHLNLSHNLLVSL 567 (1005)
Q Consensus 511 L~~n~l~~l~~l~~l~~L~~L~Ls~n~l~~~~p-~~~~~~~~~~L~~L~L~~n~l~~~ 567 (1005)
+++|.++++-++.++.+|+.||+++|-+.+--- .-+|. ...|+.|.|.+|.+-.-
T Consensus 239 lrnN~l~tL~gie~LksL~~LDlsyNll~~hseL~pLws--Ls~L~~L~LeGNPl~c~ 294 (1096)
T KOG1859|consen 239 LRNNALTTLRGIENLKSLYGLDLSYNLLSEHSELEPLWS--LSSLIVLWLEGNPLCCA 294 (1096)
T ss_pred ecccHHHhhhhHHhhhhhhccchhHhhhhcchhhhHHHH--HHHHHHHhhcCCccccC
Confidence 999999999999999999999999998764211 11222 24588889999988553
No 51
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.06 E-value=2.7e-07 Score=102.41 Aligned_cols=129 Identities=32% Similarity=0.338 Sum_probs=81.0
Q ss_pred cccEEECCCCcCcCCCCcccccccccccEEEcCCCcCCCccCccCCCCCCCCEEeCcCcccccccccccccccccCCEEe
Q 047927 357 NLAYLDLSYNIFTGGISSIGWEQLLNLFHVDLSHNNLGGSIPQSLFELPMVQHLLLADNQFDGHVTEISNASSSLLDTLD 436 (1005)
Q Consensus 357 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ 436 (1005)
.|...+.++|.+. ..... +.-++.++.|+|++|+++.. ..+..++.|++|+|+.|.+. .++.+....+. |..|.
T Consensus 165 ~L~~a~fsyN~L~-~mD~S-Lqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~ 238 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDES-LQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLN 238 (1096)
T ss_pred hHhhhhcchhhHH-hHHHH-HHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhhh-heeee
Confidence 5666677777665 22222 66677788888888887632 26677777788887777765 33333333333 66777
Q ss_pred CCCCccCCCCCccccCcCCCcEEECCCCcceeccchhHHHhcCCCCeEeccCCeeeE
Q 047927 437 LSDNNLEGPIPLSFFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRLAV 493 (1005)
Q Consensus 437 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~ 493 (1005)
+++|.++.. ..+.++.+|+.||+++|-+.+.-....+..+..|+.|+|.+|.+..
T Consensus 239 lrnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 239 LRNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC 293 (1096)
T ss_pred ecccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence 777766532 2355667777777777766655555556666667777777766543
No 52
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.05 E-value=4.5e-07 Score=79.60 Aligned_cols=61 Identities=30% Similarity=0.463 Sum_probs=28.7
Q ss_pred CCCEEECCCCcCcccCchhhhcC-CCCCEEeCCCCcCcccCcccccCCCCCCeEEccCCccccc
Q 047927 869 SLCALNLSHNALTGSIPSLIGNL-REIESLDLSMNNLSGTIPAQLASLNFLSVLNLSYNHLVGR 931 (1005)
Q Consensus 869 ~L~~L~Ls~N~l~g~ip~~~~~l-~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ 931 (1005)
.|+..+||+|.+. ..|..|... +.++.|+|++|.|+ .+|+.++.++.|+.+|+++|+|...
T Consensus 54 el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~~~ 115 (177)
T KOG4579|consen 54 ELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLNAE 115 (177)
T ss_pred eEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccccc
Confidence 3344455555554 233333322 24455555555554 3444455555555555555555443
No 53
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.03 E-value=1.6e-06 Score=86.32 Aligned_cols=164 Identities=19% Similarity=0.108 Sum_probs=76.6
Q ss_pred ccccccccEEEcCCCcCCCccCccCCCCCCCCEEeCcCcccccccccccccccccCCEEeCCCCccCCCC--Ccccc-Cc
Q 047927 377 WEQLLNLFHVDLSHNNLGGSIPQSLFELPMVQHLLLADNQFDGHVTEISNASSSLLDTLDLSDNNLEGPI--PLSFF-EL 453 (1005)
Q Consensus 377 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~--~~~l~-~l 453 (1005)
+.++|.|+.|+++.|++...+...-....+|+.+.+.+..+.-..........+.+++|.++.|.+.... ..... --
T Consensus 93 le~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s 172 (418)
T KOG2982|consen 93 LEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWS 172 (418)
T ss_pred HhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccc
Confidence 3455555555555555543222111233445555555444332222222223334444444444221100 00000 11
Q ss_pred CCCcEEECCCCcceeccc-hhHHHhcCCCCeEeccCCeeeEecCCcccccCcccceEEcCCccCcCCCC---CCCCCcee
Q 047927 454 KNLKILLLSSNKFVGTIE-LDAIQRLRNLFRLDLSYNRLAVVAGSSVYCFPPLLTTLSLASCKLSAIPN---LRKQTKLY 529 (1005)
Q Consensus 454 ~~L~~L~L~~n~l~~~~~-~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~l~~---l~~l~~L~ 529 (1005)
+.++.|....|...-... ...-.-++++..+-+..|.+.+.....-..-.+.+.-|.++.++|.++.. +..+++|.
T Consensus 173 ~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~ 252 (418)
T KOG2982|consen 173 TEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLV 252 (418)
T ss_pred hhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhh
Confidence 345555555554321111 11123456777777777766655544333334445566777776665443 66677777
Q ss_pred EEECcCCcCCC
Q 047927 530 HLDLSDNQISG 540 (1005)
Q Consensus 530 ~L~Ls~n~l~~ 540 (1005)
.|.++++++..
T Consensus 253 dlRv~~~Pl~d 263 (418)
T KOG2982|consen 253 DLRVSENPLSD 263 (418)
T ss_pred eeeccCCcccc
Confidence 77777776653
No 54
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.02 E-value=2e-06 Score=85.70 Aligned_cols=195 Identities=19% Similarity=0.231 Sum_probs=105.1
Q ss_pred cccEEeCCCCcccCCCCCCc-cccCCcccEEEeccCcccccCCCCC---CCcceeeCcCCcCccCCCcchhcccCceEEE
Q 047927 553 SFNHLNLSHNLLVSLEQPYS-ISDLTSLSVLDLHSNQIQGKIPPLP---PNAAYVDYSGNNFTSSIPVDIGSFMSLSIFF 628 (1005)
Q Consensus 553 ~L~~L~L~~n~l~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~---~~l~~L~ls~n~~~~~~p~~~~~~~~~L~~L 628 (1005)
.++.+||.+|.|++.....+ +.++|.|+.|+++.|++...|-..| .+++.+.+.+..+.-.
T Consensus 72 ~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~--------------- 136 (418)
T KOG2982|consen 72 DVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWT--------------- 136 (418)
T ss_pred hhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChh---------------
Confidence 34444444444444322211 4567888888888888875554332 2444444444333211
Q ss_pred EecCCcccccCChhhhccCCCCeEEccCccccc--cCCchhhhcCc--------ccccEEECCCCcCCccccCccCCCCC
Q 047927 629 SFSKNSLTGVIPESICNATNLLVLDLSYNYLSG--MIPTCLINMSD--------SQLGVLNLRRNNLNGTVSATFPANCS 698 (1005)
Q Consensus 629 ~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~--------~~L~~L~L~~n~l~~~~~~~~~~l~~ 698 (1005)
.....+..++.++.|++|.|.+.. .-..+...... +.+..+.++-|++... +++
T Consensus 137 ---------~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~-------Fpn 200 (418)
T KOG2982|consen 137 ---------QSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRI-------FPN 200 (418)
T ss_pred ---------hhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhh-------ccc
Confidence 122344555666666666663321 00111111110 0222233333444433 346
Q ss_pred ccEEeCCCCeecccC-cccccCCCCCCEEECCCCcCCCCcc-hhhhcCCCCcEEecCCCcCCcccCCC----CCCCCCCC
Q 047927 699 LRTLDLNGNQLEGMV-PKSLANCSVLEILDLGNNQFDDTFP-CWVKNASRLHVLILRSNNFFGNISCP----RYNVSWPM 772 (1005)
Q Consensus 699 L~~L~L~~N~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~~~~----~~~~~l~~ 772 (1005)
+..+.+..|.+.... ...+..++.+--|+|+.|+|..... +.+..+++|..|.+++|++...+.+. -.+..+++
T Consensus 201 v~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~ 280 (418)
T KOG2982|consen 201 VNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTK 280 (418)
T ss_pred chheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccc
Confidence 777778888776432 2456666777788888888875533 55777888888888888876554321 13567777
Q ss_pred ccEEEc
Q 047927 773 LQIIDL 778 (1005)
Q Consensus 773 L~~L~l 778 (1005)
++.|+=
T Consensus 281 v~vLNG 286 (418)
T KOG2982|consen 281 VQVLNG 286 (418)
T ss_pred eEEecC
Confidence 777753
No 55
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.99 E-value=6.3e-06 Score=58.85 Aligned_cols=36 Identities=42% Similarity=0.648 Sum_probs=19.6
Q ss_pred CCCEEECCCCcCcccCchhhhcCCCCCEEeCCCCcCc
Q 047927 869 SLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLS 905 (1005)
Q Consensus 869 ~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~ 905 (1005)
+|++|++++|+|+ .+|..+++|++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4555666666665 34555556666666666666555
No 56
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.84 E-value=1.3e-05 Score=57.18 Aligned_cols=38 Identities=39% Similarity=0.628 Sum_probs=32.7
Q ss_pred CCCCEEeCCCCcCcccCcccccCCCCCCeEEccCCcccc
Q 047927 892 REIESLDLSMNNLSGTIPAQLASLNFLSVLNLSYNHLVG 930 (1005)
Q Consensus 892 ~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g 930 (1005)
++|++|++++|+|+ .+|..+++|++|++||+++|+++.
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence 57999999999999 567789999999999999999973
No 57
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.82 E-value=6.9e-05 Score=81.07 Aligned_cols=76 Identities=14% Similarity=0.222 Sum_probs=44.1
Q ss_pred hhhcCcccccEEECCCCcCCccccCccCCCCCccEEeCCCCeecccCcccccCCCCCCEEECCCCcCCCCcchhhhcCCC
Q 047927 667 LINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASR 746 (1005)
Q Consensus 667 ~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 746 (1005)
+..+. +++.|++++|.++.. | .++ .+|++|.++++.-...+|+.+. ++|+.|++++|.-...+|. +
T Consensus 48 ~~~~~--~l~~L~Is~c~L~sL-P-~LP--~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~------s 113 (426)
T PRK15386 48 IEEAR--ASGRLYIKDCDIESL-P-VLP--NELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPE------S 113 (426)
T ss_pred HHHhc--CCCEEEeCCCCCccc-C-CCC--CCCcEEEccCCCCcccCCchhh--hhhhheEccCccccccccc------c
Confidence 34454 788888888877654 3 222 2688888877544445665442 5677777777732223443 3
Q ss_pred CcEEecCCCc
Q 047927 747 LHVLILRSNN 756 (1005)
Q Consensus 747 L~~L~L~~N~ 756 (1005)
|+.|++.++.
T Consensus 114 Le~L~L~~n~ 123 (426)
T PRK15386 114 VRSLEIKGSA 123 (426)
T ss_pred cceEEeCCCC
Confidence 5555555444
No 58
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.68 E-value=0.00013 Score=79.02 Aligned_cols=135 Identities=19% Similarity=0.246 Sum_probs=64.7
Q ss_pred CCcccEEEeccCcccccCCCCCCCcceeeCcCCcCccCCCcchhcccCceEEEEecCCcccccCChhhhccCCCCeEEcc
Q 047927 576 LTSLSVLDLHSNQIQGKIPPLPPNAAYVDYSGNNFTSSIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVLDLS 655 (1005)
Q Consensus 576 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ls~n~~~~~~p~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls 655 (1005)
+.+++.|++++|.++ .+|..|.+++.|.++++.-...+|..+ ...|++|++++|.....+| .+|+.|+++
T Consensus 51 ~~~l~~L~Is~c~L~-sLP~LP~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~Cs~L~sLP------~sLe~L~L~ 120 (426)
T PRK15386 51 ARASGRLYIKDCDIE-SLPVLPNELTEITIENCNNLTTLPGSI---PEGLEKLTVCHCPEISGLP------ESVRSLEIK 120 (426)
T ss_pred hcCCCEEEeCCCCCc-ccCCCCCCCcEEEccCCCCcccCCchh---hhhhhheEccCcccccccc------cccceEEeC
Confidence 345666666666444 334555556666665544333444322 3456666666663222333 245666666
Q ss_pred CccccccCCchhhhcCcccccEEECCCCc-CC-ccccCccCCCCCccEEeCCCCeecccCcccccCCCCCCEEECCCC
Q 047927 656 YNYLSGMIPTCLINMSDSQLGVLNLRRNN-LN-GTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNN 731 (1005)
Q Consensus 656 ~N~l~~~~p~~~~~l~~~~L~~L~L~~n~-l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N 731 (1005)
.+.... +..++. +|+.|.+.+++ .. ...|..++ ++|++|++++|... ..|..+. .+|+.|+++.|
T Consensus 121 ~n~~~~-----L~~LPs-sLk~L~I~~~n~~~~~~lp~~LP--sSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 121 GSATDS-----IKNVPN-GLTSLSINSYNPENQARIDNLIS--PSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE 187 (426)
T ss_pred CCCCcc-----cccCcc-hHhheeccccccccccccccccC--CcccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence 554321 112222 45555554322 11 01111111 36777777776655 3343333 46677776665
No 59
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.62 E-value=2.3e-05 Score=92.49 Aligned_cols=110 Identities=16% Similarity=0.278 Sum_probs=70.4
Q ss_pred CccCceeecCCccCCCchhhHHHHHhccCCCccEEEccCCCCCCC-CCccccCCCCCcEEECCCCCCCCCcchhccCCCC
Q 047927 160 LAELRELYLDGVNISAPGIEWCQALSSLVPKLQVLSLSGCFLSGP-VDPSLSNLRSLSVIRLDMNDLYSPVPEFLADFSN 238 (1005)
Q Consensus 160 l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~L~~L~L~~n~~~~~-~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~ 238 (1005)
-.+|++|+++|.. .....|...+...+|+|+.|.+.+-.+... ......++++|..||+++.++... ..++++++
T Consensus 121 r~nL~~LdI~G~~--~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~Lkn 196 (699)
T KOG3665|consen 121 RQNLQHLDISGSE--LFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKN 196 (699)
T ss_pred HHhhhhcCccccc--hhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhcccc
Confidence 3567777777743 335567777777778888888877554322 122344667777777777766544 55667777
Q ss_pred CcEEEccCCCCCc-cCccccCCCCCCCEEeCCCCCC
Q 047927 239 LTSLYLSSCGLHG-AFPEKILQLPTLETLDLSYNEL 273 (1005)
Q Consensus 239 L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~Ls~n~~ 273 (1005)
|++|.+.+=.+.. ..-..+.++++|++||+|....
T Consensus 197 Lq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~ 232 (699)
T KOG3665|consen 197 LQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKN 232 (699)
T ss_pred HHHHhccCCCCCchhhHHHHhcccCCCeeecccccc
Confidence 7777776665542 2223566777777777776643
No 60
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.57 E-value=4.9e-06 Score=87.13 Aligned_cols=317 Identities=19% Similarity=0.170 Sum_probs=138.4
Q ss_pred CCCCcc-cceeEECCCCCEEEEEcCCCCc--ccccCCCcccccc-cccceeecCCccCC-CCCCCCcccCCCCCcEEEcc
Q 047927 39 SNDCCT-WSGVDCDEAGRVIGLDLSEESI--SAGIDNSSSLFSL-KYLQSLNLAFNMFN-ATEIPSGLGNLTNLTTLNLS 113 (1005)
Q Consensus 39 ~~~~c~-w~gv~c~~~~~v~~L~L~~~~l--~~~~~~~~~l~~l-~~L~~L~Ls~~~~~-~~~lp~~l~~l~~L~~L~Ls 113 (1005)
...||. |++-+-|. +-=.++||..... .+.+. ...+.++ ..||.|.+.++.-. ...+-..-.+++++++|++.
T Consensus 95 ~a~~c~~~n~~AlD~-~~~q~idL~t~~rDv~g~VV-~~~~~Rcgg~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~ 172 (483)
T KOG4341|consen 95 AAQCCTMWNKLALDG-SCWQHIDLFTFQRDVDGGVV-ENMISRCGGFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALY 172 (483)
T ss_pred HHHHHHHhhhhhhcc-ccceeeehhcchhcCCCcce-ehHhhhhccccccccccccccCCcchhhHHhhhCCchhhhhhh
Confidence 456674 88755543 2234455543322 12110 1111112 45777777776432 22222334567777777777
Q ss_pred cCC-CcCCCccccc-CCCCCcEEeCCCcccccCccccCCCChhhhhhcCccCceeecCCccCCCchhhHHHHHhccCCCc
Q 047927 114 NAG-FAGQIPIQVS-GMTRLVTLDLSGMYFVRAPLKLENPNLSGLLQNLAELRELYLDGVNISAPGIEWCQALSSLVPKL 191 (1005)
Q Consensus 114 ~n~-~~~~lp~~l~-~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~L 191 (1005)
+|. +++..-..++ .+++|++|++..|. .++.. .+..+..-+++|
T Consensus 173 gc~~iTd~s~~sla~~C~~l~~l~L~~c~-------------------------------~iT~~---~Lk~la~gC~kL 218 (483)
T KOG4341|consen 173 GCKKITDSSLLSLARYCRKLRHLNLHSCS-------------------------------SITDV---SLKYLAEGCRKL 218 (483)
T ss_pred cceeccHHHHHHHHHhcchhhhhhhcccc-------------------------------hhHHH---HHHHHHHhhhhH
Confidence 774 3322223332 46677777766542 11111 122222333555
Q ss_pred cEEEccCCC-CCCC-CCccccCCCCCcEEECCCCCCCCC--cchhccCCCCCcEEEccCCC-CCccCccc-cCCCCCCCE
Q 047927 192 QVLSLSGCF-LSGP-VDPSLSNLRSLSVIRLDMNDLYSP--VPEFLADFSNLTSLYLSSCG-LHGAFPEK-ILQLPTLET 265 (1005)
Q Consensus 192 ~~L~L~~n~-~~~~-~~~~l~~l~~L~~L~l~~n~~~~~--~p~~l~~l~~L~~L~L~~n~-l~~~~p~~-l~~l~~L~~ 265 (1005)
+++++++|. +++. +..-..+++.++.+.+.++.-.+. +-..=+.+..+.++++..|. +++.--.. -..+..|++
T Consensus 219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~ 298 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQV 298 (483)
T ss_pred HHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhh
Confidence 555555553 2221 111223444455554444321110 00011223445555555552 33221111 123556666
Q ss_pred EeCCCCCCCC-CCCCccc-CCCCCcEEEccccc-ccccCchhh-ccCCCCCEEeecCCccCCC--CCccCCCCCCCcEEE
Q 047927 266 LDLSYNELLQ-GSLPDFH-QNLSLETLILSATN-FSGILPDSI-KNLKNLSRVEFYLCNFNGP--IPTSMSDLSQLVYLD 339 (1005)
Q Consensus 266 L~Ls~n~~~~-~~~~~~~-~~~~L~~L~L~~n~-l~~~~p~~l-~~l~~L~~L~l~~n~~~~~--~~~~l~~l~~L~~L~ 339 (1005)
|+.+++.... ..+..+. +..+|+.|.++.++ ++..--..+ .+++.|+.+++..+..... +...-.+++.|+++.
T Consensus 299 l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~ls 378 (483)
T KOG4341|consen 299 LCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLS 378 (483)
T ss_pred hcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCC
Confidence 6666553211 1111121 25566666666654 232222222 2566677777766654321 222223466777777
Q ss_pred CcCCcCccCC------CcccccCcccEEECCCCcCcCCCCcccccccccccEEEcCCC
Q 047927 340 MSFNHFSGPI------PSLHMFRNLAYLDLSYNIFTGGISSIGWEQLLNLFHVDLSHN 391 (1005)
Q Consensus 340 L~~n~l~~~~------~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n 391 (1005)
+++|...... ........|+.+.++++.......-..+..+++|+.+++..+
T Consensus 379 lshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~ 436 (483)
T KOG4341|consen 379 LSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDC 436 (483)
T ss_pred hhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeech
Confidence 7766532211 011223355566666655432222222444555555555444
No 61
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.41 E-value=0.00028 Score=67.04 Aligned_cols=104 Identities=29% Similarity=0.310 Sum_probs=68.0
Q ss_pred cCCEEeCCCCccCCCCCccccCcCCCcEEECCCCcceeccchhHHHhcCCCCeEeccCCeeeEecCCcccccCcccceEE
Q 047927 431 LLDTLDLSDNNLEGPIPLSFFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRLAVVAGSSVYCFPPLLTTLS 510 (1005)
Q Consensus 431 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ 510 (1005)
....+|+++|.+... ..|..++.|..|.+.+|+++ .|.+..-..+++|+.|.+.+|.+..+.+..-...++.|++|.
T Consensus 43 ~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred ccceecccccchhhc--ccCCCccccceEEecCCcce-eeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 355667777766522 24666777888888888877 666665666677777777777776665544444455677777
Q ss_pred cCCccCcCCCC-----CCCCCceeEEECcCCc
Q 047927 511 LASCKLSAIPN-----LRKQTKLYHLDLSDNQ 537 (1005)
Q Consensus 511 L~~n~l~~l~~-----l~~l~~L~~L~Ls~n~ 537 (1005)
+-+|.++.-+. +..+++|+.||...-.
T Consensus 120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred ecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 77776665554 5566777777766543
No 62
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.36 E-value=8.9e-05 Score=87.60 Aligned_cols=137 Identities=20% Similarity=0.238 Sum_probs=75.2
Q ss_pred cccceeecCCccCCCCCCCCccc-CCCCCcEEEcccCCCcCC-CcccccCCCCCcEEeCCCcccccCccccCCCChhhhh
Q 047927 80 KYLQSLNLAFNMFNATEIPSGLG-NLTNLTTLNLSNAGFAGQ-IPIQVSGMTRLVTLDLSGMYFVRAPLKLENPNLSGLL 157 (1005)
Q Consensus 80 ~~L~~L~Ls~~~~~~~~lp~~l~-~l~~L~~L~Ls~n~~~~~-lp~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~l 157 (1005)
.+||+||+++...-....|..++ .||.|++|.+++-.+... .-....++++|+.||+|++.++.. ..+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl----------~GI 191 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL----------SGI 191 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc----------HHH
Confidence 46666666665432222344443 456777776666544322 122224566677777776654432 236
Q ss_pred hcCccCceeecCCccCCCchhhHHHHHhccCCCccEEEccCCCCCCCC--C----ccccCCCCCcEEECCCCCCCCCc
Q 047927 158 QNLAELRELYLDGVNISAPGIEWCQALSSLVPKLQVLSLSGCFLSGPV--D----PSLSNLRSLSVIRLDMNDLYSPV 229 (1005)
Q Consensus 158 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~L~~L~L~~n~~~~~~--~----~~l~~l~~L~~L~l~~n~~~~~~ 229 (1005)
+++++|+.|.+.+-.+.. ...+..+..+ .+|+.||+|........ . +.-..+++|+.||.++..+...+
T Consensus 192 S~LknLq~L~mrnLe~e~--~~~l~~LF~L-~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~ 266 (699)
T KOG3665|consen 192 SRLKNLQVLSMRNLEFES--YQDLIDLFNL-KKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEI 266 (699)
T ss_pred hccccHHHHhccCCCCCc--hhhHHHHhcc-cCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHH
Confidence 666677776666655543 2334445555 77777777765433221 1 11234778888888877665543
No 63
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.29 E-value=0.00049 Score=65.44 Aligned_cols=84 Identities=23% Similarity=0.265 Sum_probs=50.2
Q ss_pred CCCCEEeCCCCCCCCCCCCcccCCCCCcEEEcccccccccCchhhccCCCCCEEeecCCccCCCC-CccCCCCCCCcEEE
Q 047927 261 PTLETLDLSYNELLQGSLPDFHQNLSLETLILSATNFSGILPDSIKNLKNLSRVEFYLCNFNGPI-PTSMSDLSQLVYLD 339 (1005)
Q Consensus 261 ~~L~~L~Ls~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~-~~~l~~l~~L~~L~ 339 (1005)
.+...+||++|.+ ...+.|..++.|.+|.+.+|+|+.+-|.--..+++|+.|.+.+|++.... -.-+..+++|++|.
T Consensus 42 d~~d~iDLtdNdl--~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 42 DQFDAIDLTDNDL--RKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred cccceecccccch--hhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 3455666666655 34455666666777777777776665555455666677777666654211 12255566777777
Q ss_pred CcCCcCc
Q 047927 340 MSFNHFS 346 (1005)
Q Consensus 340 L~~n~l~ 346 (1005)
+-+|..+
T Consensus 120 ll~Npv~ 126 (233)
T KOG1644|consen 120 LLGNPVE 126 (233)
T ss_pred ecCCchh
Confidence 6666654
No 64
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.04 E-value=0.0018 Score=60.06 Aligned_cols=123 Identities=18% Similarity=0.272 Sum_probs=50.9
Q ss_pred chhcccCceEEEEecCCcccccCChhhhccCCCCeEEccCccccccCCchhhhcCcccccEEECCCCcCCccccCccCCC
Q 047927 617 DIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPAN 696 (1005)
Q Consensus 617 ~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l 696 (1005)
..+..++.++.+.+.. .+...-...|..+++|+.+++.++ +.......|..+. +++.+.+.+ .+.......|..+
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~--~l~~i~~~~-~~~~i~~~~F~~~ 80 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCK--SLESITFPN-NLKSIGDNAFSNC 80 (129)
T ss_dssp TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-T--T-EEEEETS-TT-EE-TTTTTT-
T ss_pred HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeeccc--ccccccccc-ccccccccccccc
Confidence 3344455666666653 344444555666666666666654 4433334455554 566666654 4444444556666
Q ss_pred CCccEEeCCCCeecccCcccccCCCCCCEEECCCCcCCCCcchhhhcCCCC
Q 047927 697 CSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRL 747 (1005)
Q Consensus 697 ~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 747 (1005)
++|+.+++..+ +..+....|.++ .|+.+.+.. .++.+....|.++++|
T Consensus 81 ~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 81 TNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred ccccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 66666666554 443444555555 666666554 3333444455555444
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.67 E-value=0.0019 Score=64.51 Aligned_cols=86 Identities=21% Similarity=0.236 Sum_probs=47.8
Q ss_pred CCCccEEeCCCCeecccCcccccCCCCCCEEECCCC--cCCCCcchhhhcCCCCcEEecCCCcCCcccCCCCCCCCCCCc
Q 047927 696 NCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNN--QFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPML 773 (1005)
Q Consensus 696 l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N--~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L 773 (1005)
+..|+.|++.+..++.. ..|-.+++|+.|++|.| ++.+-.+.....+++|+++++++|++.- +..-..+..+.+|
T Consensus 42 ~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~-lstl~pl~~l~nL 118 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD-LSTLRPLKELENL 118 (260)
T ss_pred ccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc-ccccchhhhhcch
Confidence 34455555555555532 33455566666666666 5555455555555666666666666642 2222334455666
Q ss_pred cEEEccCCccc
Q 047927 774 QIIDLASNKFS 784 (1005)
Q Consensus 774 ~~L~ls~N~~~ 784 (1005)
..||+.+|.-+
T Consensus 119 ~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 119 KSLDLFNCSVT 129 (260)
T ss_pred hhhhcccCCcc
Confidence 67777666554
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.66 E-value=0.0015 Score=65.23 Aligned_cols=88 Identities=23% Similarity=0.295 Sum_probs=41.1
Q ss_pred ccCCCCCcEEEcccC--CCcCCCcccccCCCCCcEEeCCCcccccCccccCCCChhhhhhcCccCceeecCCccCCCchh
Q 047927 101 LGNLTNLTTLNLSNA--GFAGQIPIQVSGMTRLVTLDLSGMYFVRAPLKLENPNLSGLLQNLAELRELYLDGVNISAPGI 178 (1005)
Q Consensus 101 l~~l~~L~~L~Ls~n--~~~~~lp~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 178 (1005)
+-.+++|++|.++.| ++.+.++.-..++++|++|+++.|+++.+ .-...+..+.+|..|++.++..+....
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~l-------stl~pl~~l~nL~~Ldl~n~~~~~l~d 133 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDL-------STLRPLKELENLKSLDLFNCSVTNLDD 133 (260)
T ss_pred CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccc-------cccchhhhhcchhhhhcccCCcccccc
Confidence 334556666666666 44444444444556666666666654321 111224445555555555554433211
Q ss_pred hHHHHHhccCCCccEEEc
Q 047927 179 EWCQALSSLVPKLQVLSL 196 (1005)
Q Consensus 179 ~~~~~l~~l~~~L~~L~L 196 (1005)
.-..+..+.++|++|+-
T Consensus 134 -yre~vf~ll~~L~~LD~ 150 (260)
T KOG2739|consen 134 -YREKVFLLLPSLKYLDG 150 (260)
T ss_pred -HHHHHHHHhhhhccccc
Confidence 11222223355555544
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.40 E-value=0.00017 Score=71.64 Aligned_cols=100 Identities=26% Similarity=0.333 Sum_probs=70.6
Q ss_pred CCCCcEEEccCCCCCccCccccCCCCCCCEEeCCCCCCCCCCCCcccCCCCCcEEEcccccccccC-chhhccCCCCCEE
Q 047927 236 FSNLTSLYLSSCGLHGAFPEKILQLPTLETLDLSYNELLQGSLPDFHQNLSLETLILSATNFSGIL-PDSIKNLKNLSRV 314 (1005)
Q Consensus 236 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L 314 (1005)
+.+.+.|+..+|+++++ ....+++.|++|.||-|.| ..+..+..+++|++|+|..|.|...- -..+.++++|+.|
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkI--ssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKI--SSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeecccc--ccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 45677788888888754 3456788888888888876 44566777888888888888877432 2345678888888
Q ss_pred eecCCccCCCCCcc-----CCCCCCCcEEE
Q 047927 315 EFYLCNFNGPIPTS-----MSDLSQLVYLD 339 (1005)
Q Consensus 315 ~l~~n~~~~~~~~~-----l~~l~~L~~L~ 339 (1005)
.|..|...+.-+.. +.-+++|+.||
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhcc
Confidence 88888777655432 34467777665
No 68
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.32 E-value=0.0082 Score=55.53 Aligned_cols=37 Identities=14% Similarity=0.227 Sum_probs=12.6
Q ss_pred hccCCCCCcEEEccCCCCCccCccccCCCCCCCEEeCC
Q 047927 232 FLADFSNLTSLYLSSCGLHGAFPEKILQLPTLETLDLS 269 (1005)
Q Consensus 232 ~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls 269 (1005)
.|..+++|+.+.+..+ +.......+.++++++.+.+.
T Consensus 30 ~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~ 66 (129)
T PF13306_consen 30 AFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFP 66 (129)
T ss_dssp TTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEET
T ss_pred hccccccccccccccc-ccccceeeeeccccccccccc
Confidence 3444444444444432 322222333344444444443
No 69
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.15 E-value=0.00045 Score=68.74 Aligned_cols=85 Identities=24% Similarity=0.190 Sum_probs=43.7
Q ss_pred CCcEEECCCCcceeccchhHHHhcCCCCeEeccCCeeeEecCCcccccCcccceEEcCCccCcCCCC---CCCCCceeEE
Q 047927 455 NLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRLAVVAGSSVYCFPPLLTTLSLASCKLSAIPN---LRKQTKLYHL 531 (1005)
Q Consensus 455 ~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~l~~---l~~l~~L~~L 531 (1005)
+.+.|++.+|.+. .| .....++.|++|.|+-|+|+++.. ...+..|++|+|+.|.|.++.. +.++++|+.|
T Consensus 20 ~vkKLNcwg~~L~-DI--sic~kMp~lEVLsLSvNkIssL~p---l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 20 NVKKLNCWGCGLD-DI--SICEKMPLLEVLSLSVNKISSLAP---LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HhhhhcccCCCcc-HH--HHHHhcccceeEEeeccccccchh---HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 3444444444443 11 233444444444444444444332 1223335555555555555444 6777888888
Q ss_pred ECcCCcCCCCCChh
Q 047927 532 DLSDNQISGEIPNW 545 (1005)
Q Consensus 532 ~Ls~n~l~~~~p~~ 545 (1005)
.|..|.-.+.-+..
T Consensus 94 WL~ENPCc~~ag~n 107 (388)
T KOG2123|consen 94 WLDENPCCGEAGQN 107 (388)
T ss_pred hhccCCcccccchh
Confidence 88888766655543
No 70
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.07 E-value=0.0024 Score=37.74 Aligned_cols=19 Identities=53% Similarity=0.815 Sum_probs=8.3
Q ss_pred CCEEeCCCCcCcccCccccc
Q 047927 894 IESLDLSMNNLSGTIPAQLA 913 (1005)
Q Consensus 894 L~~LdLs~N~l~~~ip~~l~ 913 (1005)
|++|||++|+|+ .+|++|+
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 344444444444 3444333
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.86 E-value=0.0033 Score=37.19 Aligned_cols=20 Identities=60% Similarity=0.649 Sum_probs=10.8
Q ss_pred CCEEECCCCcCcccCchhhhc
Q 047927 870 LCALNLSHNALTGSIPSLIGN 890 (1005)
Q Consensus 870 L~~L~Ls~N~l~g~ip~~~~~ 890 (1005)
|++|||++|+|+ .||++|++
T Consensus 2 L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp ESEEEETSSEES-EEGTTTTT
T ss_pred ccEEECCCCcCE-eCChhhcC
Confidence 455555555555 55555443
No 72
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.69 E-value=0.0023 Score=74.95 Aligned_cols=63 Identities=29% Similarity=0.222 Sum_probs=30.5
Q ss_pred CCCCCcEEECCCCC-CCCCcchhccC-CCCCcEEEccCCC-CCccCccc-cCCCCCCCEEeCCCCCC
Q 047927 211 NLRSLSVIRLDMND-LYSPVPEFLAD-FSNLTSLYLSSCG-LHGAFPEK-ILQLPTLETLDLSYNEL 273 (1005)
Q Consensus 211 ~l~~L~~L~l~~n~-~~~~~p~~l~~-l~~L~~L~L~~n~-l~~~~p~~-l~~l~~L~~L~Ls~n~~ 273 (1005)
.+++|+.++++++. ++...-..++. +++|++|.+.+|. +++..-.. ...++.|++|+++++..
T Consensus 241 ~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 241 ICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred hcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 34555666665554 33222223332 5566666655554 34322222 23455666666666543
No 73
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.31 E-value=0.002 Score=75.37 Aligned_cols=36 Identities=33% Similarity=0.276 Sum_probs=19.2
Q ss_pred CCEEeCCCCccCCC-CCccccC-cCCCcEEECCCCcce
Q 047927 432 LDTLDLSDNNLEGP-IPLSFFE-LKNLKILLLSSNKFV 467 (1005)
Q Consensus 432 L~~L~L~~n~l~~~-~~~~l~~-l~~L~~L~L~~n~l~ 467 (1005)
++.|+++.+..... .-..... +..++.+++.++...
T Consensus 403 l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~ 440 (482)
T KOG1947|consen 403 LRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVI 440 (482)
T ss_pred cceEecccCccccccchHHHhhhhhccccCCccCcccc
Confidence 66666666653311 1111111 566777888777654
No 74
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.70 E-value=0.00076 Score=76.31 Aligned_cols=173 Identities=25% Similarity=0.284 Sum_probs=80.1
Q ss_pred hhhhhcCccCceeecCCccCCCchhhHHHHHhccC-CCccEEEccCCCCCCCC----CccccCCCCCcEEECCCCCCCC-
Q 047927 154 SGLLQNLAELRELYLDGVNISAPGIEWCQALSSLV-PKLQVLSLSGCFLSGPV----DPSLSNLRSLSVIRLDMNDLYS- 227 (1005)
Q Consensus 154 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~-~~L~~L~L~~n~~~~~~----~~~l~~l~~L~~L~l~~n~~~~- 227 (1005)
...+.....|+.|++++|.+.+.+...+....... ..+++|++..|.++... ...+.....++.++++.|.+..
T Consensus 108 ~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~ 187 (478)
T KOG4308|consen 108 AQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIEL 187 (478)
T ss_pred HHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchh
Confidence 34455555666666666666544444443332221 44555566555555432 2233344555555555554421
Q ss_pred ---Ccchhc----cCCCCCcEEEccCCCCCccC----ccccCCCCC-CCEEeCCCCCCCCCCCCcccCCCCCcEEEcccc
Q 047927 228 ---PVPEFL----ADFSNLTSLYLSSCGLHGAF----PEKILQLPT-LETLDLSYNELLQGSLPDFHQNLSLETLILSAT 295 (1005)
Q Consensus 228 ---~~p~~l----~~l~~L~~L~L~~n~l~~~~----p~~l~~l~~-L~~L~Ls~n~~~~~~~~~~~~~~~L~~L~L~~n 295 (1005)
.++..+ ....++++|.+++|.++... ...+...+. +..|++..|.+.+....
T Consensus 188 g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~---------------- 251 (478)
T KOG4308|consen 188 GLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVE---------------- 251 (478)
T ss_pred hhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHH----------------
Confidence 011112 23445555555555544211 112222333 34445544443222111
Q ss_pred cccccCchhhccC-CCCCEEeecCCccCCCCC----ccCCCCCCCcEEECcCCcCc
Q 047927 296 NFSGILPDSIKNL-KNLSRVEFYLCNFNGPIP----TSMSDLSQLVYLDMSFNHFS 346 (1005)
Q Consensus 296 ~l~~~~p~~l~~l-~~L~~L~l~~n~~~~~~~----~~l~~l~~L~~L~L~~n~l~ 346 (1005)
...+.+..+ ..+++++++.|.++..-. ..+..++.++++.++.|.+.
T Consensus 252 ----~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 252 ----KLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred ----HHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 112233333 455666666666654332 23445667777777777664
No 75
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.15 E-value=0.0029 Score=71.73 Aligned_cols=192 Identities=26% Similarity=0.239 Sum_probs=114.3
Q ss_pred cccceeecCCccCCCCC---CCCcccCCCCCcEEEcccCCCcCCCcccc----cCC-CCCcEEeCCCcccccCccccCCC
Q 047927 80 KYLQSLNLAFNMFNATE---IPSGLGNLTNLTTLNLSNAGFAGQIPIQV----SGM-TRLVTLDLSGMYFVRAPLKLENP 151 (1005)
Q Consensus 80 ~~L~~L~Ls~~~~~~~~---lp~~l~~l~~L~~L~Ls~n~~~~~lp~~l----~~l-~~L~~L~ls~n~~~~~~~~~~~~ 151 (1005)
..++.|.|.+|.+.... +...+....+|..|++++|.+.+.--..+ ... ..|++|++..|.++... ..
T Consensus 87 ~~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g----~~ 162 (478)
T KOG4308|consen 87 ASLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEG----AA 162 (478)
T ss_pred hhHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccc----hH
Confidence 33677777777765441 22445666777777887777753322222 222 34666777766654432 22
Q ss_pred ChhhhhhcCccCceeecCCccCCCchhhHHH-HHhc---cCCCccEEEccCCCCCCCCC----ccccCCCC-CcEEECCC
Q 047927 152 NLSGLLQNLAELRELYLDGVNISAPGIEWCQ-ALSS---LVPKLQVLSLSGCFLSGPVD----PSLSNLRS-LSVIRLDM 222 (1005)
Q Consensus 152 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~l~~---l~~~L~~L~L~~n~~~~~~~----~~l~~l~~-L~~L~l~~ 222 (1005)
.+.+.+.....+++++++.|.+...+..... .+.. ...++++|.+++|.++...- ..+...+. +..+++..
T Consensus 163 ~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~ 242 (478)
T KOG4308|consen 163 PLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLAS 242 (478)
T ss_pred HHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHh
Confidence 3445566677777788777766543333222 2222 23677788888777663211 22344444 66678887
Q ss_pred CCCCCC----cchhccCC-CCCcEEEccCCCCCccC----ccccCCCCCCCEEeCCCCCCCC
Q 047927 223 NDLYSP----VPEFLADF-SNLTSLYLSSCGLHGAF----PEKILQLPTLETLDLSYNELLQ 275 (1005)
Q Consensus 223 n~~~~~----~p~~l~~l-~~L~~L~L~~n~l~~~~----p~~l~~l~~L~~L~Ls~n~~~~ 275 (1005)
|.+... ....+..+ ..+++++++.|.++..- ...+..++.++++.++.|.+..
T Consensus 243 n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 243 NKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred cCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 776543 22334444 67789999999887543 3445567899999999987654
No 76
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.90 E-value=0.0038 Score=60.62 Aligned_cols=84 Identities=20% Similarity=0.220 Sum_probs=73.9
Q ss_pred cccceEEECCCCeeeccCcccccCCCCCCEEECCCCcCcccCchhhhcCCCCCEEeCCCCcCcccCcccccCCCCCCeEE
Q 047927 843 LNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLN 922 (1005)
Q Consensus 843 ~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ 922 (1005)
....+.||++.|++. .....|.-++.|..||+|.|.+. ..|..++++..+..+++.+|..+ ..|-++..++.+++++
T Consensus 41 ~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e 117 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNE 117 (326)
T ss_pred cceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhh
Confidence 355688999999987 45566777889999999999998 78999999999999999999998 7899999999999999
Q ss_pred ccCCccc
Q 047927 923 LSYNHLV 929 (1005)
Q Consensus 923 ls~N~l~ 929 (1005)
+-.|.+.
T Consensus 118 ~k~~~~~ 124 (326)
T KOG0473|consen 118 QKKTEFF 124 (326)
T ss_pred hccCcch
Confidence 9999875
No 77
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=91.06 E-value=0.14 Score=27.98 Aligned_cols=12 Identities=58% Similarity=0.714 Sum_probs=4.0
Q ss_pred CCEEECCCCcCc
Q 047927 870 LCALNLSHNALT 881 (1005)
Q Consensus 870 L~~L~Ls~N~l~ 881 (1005)
|+.|+|++|+|+
T Consensus 3 L~~L~l~~n~L~ 14 (17)
T PF13504_consen 3 LRTLDLSNNRLT 14 (17)
T ss_dssp -SEEEETSS--S
T ss_pred cCEEECCCCCCC
Confidence 444444444443
No 78
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=90.67 E-value=0.015 Score=56.72 Aligned_cols=82 Identities=18% Similarity=0.137 Sum_probs=68.2
Q ss_pred CCEEEEEcCCCCcccccCCCcccccccccceeecCCccCCCCCCCCcccCCCCCcEEEcccCCCcCCCcccccCCCCCcE
Q 047927 54 GRVIGLDLSEESISAGIDNSSSLFSLKYLQSLNLAFNMFNATEIPSGLGNLTNLTTLNLSNAGFAGQIPIQVSGMTRLVT 133 (1005)
Q Consensus 54 ~~v~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~l~~l~~L~~ 133 (1005)
.||++||++.+.+... -..++.++.|..||++.|.+. -+|..++....++++++..|..+ ..|.+.++++++++
T Consensus 42 kr~tvld~~s~r~vn~---~~n~s~~t~~~rl~~sknq~~--~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~ 115 (326)
T KOG0473|consen 42 KRVTVLDLSSNRLVNL---GKNFSILTRLVRLDLSKNQIK--FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKK 115 (326)
T ss_pred ceeeeehhhhhHHHhh---ccchHHHHHHHHHhccHhhHh--hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcch
Confidence 6899999999877642 356788889999999988774 37889999999999999888775 88999999999999
Q ss_pred EeCCCccc
Q 047927 134 LDLSGMYF 141 (1005)
Q Consensus 134 L~ls~n~~ 141 (1005)
+++..+.+
T Consensus 116 ~e~k~~~~ 123 (326)
T KOG0473|consen 116 NEQKKTEF 123 (326)
T ss_pred hhhccCcc
Confidence 99888764
No 79
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=88.75 E-value=0.25 Score=26.95 Aligned_cols=14 Identities=36% Similarity=0.646 Sum_probs=5.1
Q ss_pred cceEEcCCccCcCC
Q 047927 506 LTTLSLASCKLSAI 519 (1005)
Q Consensus 506 L~~L~L~~n~l~~l 519 (1005)
|+.|++++|+++++
T Consensus 3 L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 3 LRTLDLSNNRLTSL 16 (17)
T ss_dssp -SEEEETSS--SSE
T ss_pred cCEEECCCCCCCCC
Confidence 44444444444443
No 80
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=88.21 E-value=0.38 Score=29.70 Aligned_cols=14 Identities=50% Similarity=0.639 Sum_probs=7.1
Q ss_pred CCCCEEeCCCCcCc
Q 047927 892 REIESLDLSMNNLS 905 (1005)
Q Consensus 892 ~~L~~LdLs~N~l~ 905 (1005)
++|++|+|++|+|+
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 34455555555555
No 81
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=88.21 E-value=0.38 Score=29.70 Aligned_cols=14 Identities=50% Similarity=0.639 Sum_probs=7.1
Q ss_pred CCCCEEeCCCCcCc
Q 047927 892 REIESLDLSMNNLS 905 (1005)
Q Consensus 892 ~~L~~LdLs~N~l~ 905 (1005)
++|++|+|++|+|+
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 34455555555555
No 82
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=85.45 E-value=0.27 Score=29.66 Aligned_cols=14 Identities=43% Similarity=0.598 Sum_probs=5.1
Q ss_pred CCCEEECCCCcCcc
Q 047927 869 SLCALNLSHNALTG 882 (1005)
Q Consensus 869 ~L~~L~Ls~N~l~g 882 (1005)
+|++|+|++|+|+.
T Consensus 3 ~L~~L~l~~n~i~~ 16 (24)
T PF13516_consen 3 NLETLDLSNNQITD 16 (24)
T ss_dssp T-SEEE-TSSBEHH
T ss_pred CCCEEEccCCcCCH
Confidence 34444444444443
No 83
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=85.40 E-value=0.78 Score=28.25 Aligned_cols=19 Identities=42% Similarity=0.471 Sum_probs=10.4
Q ss_pred CCCCEEECCCCcCCCCcch
Q 047927 721 SVLEILDLGNNQFDDTFPC 739 (1005)
Q Consensus 721 ~~L~~L~Ls~N~l~~~~p~ 739 (1005)
++|+.|+|++|+++...+.
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4556666666666544333
No 84
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=85.40 E-value=0.78 Score=28.25 Aligned_cols=19 Identities=42% Similarity=0.471 Sum_probs=10.4
Q ss_pred CCCCEEECCCCcCCCCcch
Q 047927 721 SVLEILDLGNNQFDDTFPC 739 (1005)
Q Consensus 721 ~~L~~L~Ls~N~l~~~~p~ 739 (1005)
++|+.|+|++|+++...+.
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4556666666666544333
No 85
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=84.64 E-value=0.17 Score=30.52 Aligned_cols=20 Identities=30% Similarity=0.436 Sum_probs=10.5
Q ss_pred CCCCEEeCCCCcCcccCccc
Q 047927 892 REIESLDLSMNNLSGTIPAQ 911 (1005)
Q Consensus 892 ~~L~~LdLs~N~l~~~ip~~ 911 (1005)
++|+.|||++|+|++..+..
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~ 21 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASA 21 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHH
Confidence 45666666666666554433
No 86
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.14 E-value=0.19 Score=48.41 Aligned_cols=33 Identities=15% Similarity=0.174 Sum_probs=14.5
Q ss_pred CcEEEccCCCCCccCccccCCCCCCCEEeCCCC
Q 047927 239 LTSLYLSSCGLHGAFPEKILQLPTLETLDLSYN 271 (1005)
Q Consensus 239 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n 271 (1005)
++.++-+++.|..+.-+.+..++.++.|.+.+|
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~c 135 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANC 135 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccc
Confidence 344444444444333334444444444444444
No 87
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.56 E-value=0.37 Score=46.56 Aligned_cols=41 Identities=34% Similarity=0.469 Sum_probs=22.3
Q ss_pred HHHHhccCCCccEEEccCCC-CCCCCCccccCCCCCcEEECC
Q 047927 181 CQALSSLVPKLQVLSLSGCF-LSGPVDPSLSNLRSLSVIRLD 221 (1005)
Q Consensus 181 ~~~l~~l~~~L~~L~L~~n~-~~~~~~~~l~~l~~L~~L~l~ 221 (1005)
+..+....++|+.|++++|. |++..-..+.++++|+.|.+.
T Consensus 143 L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~ 184 (221)
T KOG3864|consen 143 LERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLY 184 (221)
T ss_pred HHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhc
Confidence 44444455777777777664 444333444455555555443
No 88
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=72.27 E-value=2.8 Score=25.81 Aligned_cols=18 Identities=28% Similarity=0.663 Sum_probs=12.1
Q ss_pred cccceEEcCCccCcCCCC
Q 047927 504 PLLTTLSLASCKLSAIPN 521 (1005)
Q Consensus 504 ~~L~~L~L~~n~l~~l~~ 521 (1005)
+.|+.|++++|+++++|.
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 346677777777777765
No 89
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=72.12 E-value=3.1 Score=25.72 Aligned_cols=14 Identities=43% Similarity=0.684 Sum_probs=8.8
Q ss_pred CCCCEEeCCCCcCc
Q 047927 892 REIESLDLSMNNLS 905 (1005)
Q Consensus 892 ~~L~~LdLs~N~l~ 905 (1005)
++|+.|+|++|+|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 45666666666664
No 90
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=59.90 E-value=6.8 Score=24.66 Aligned_cols=13 Identities=46% Similarity=0.649 Sum_probs=7.0
Q ss_pred CCCEEeCCCCcCc
Q 047927 893 EIESLDLSMNNLS 905 (1005)
Q Consensus 893 ~L~~LdLs~N~l~ 905 (1005)
+|++|||++|.+.
T Consensus 3 ~L~~LdL~~N~i~ 15 (28)
T smart00368 3 SLRELDLSNNKLG 15 (28)
T ss_pred ccCEEECCCCCCC
Confidence 4555555555553
No 91
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=47.31 E-value=11 Score=51.17 Aligned_cols=32 Identities=25% Similarity=0.393 Sum_probs=17.8
Q ss_pred ECCCCcCcccCchhhhcCCCCCEEeCCCCcCc
Q 047927 874 NLSHNALTGSIPSLIGNLREIESLDLSMNNLS 905 (1005)
Q Consensus 874 ~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~ 905 (1005)
||++|+|+..-+..|..+++|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 45566666444445555555666666655554
No 92
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=44.31 E-value=58 Score=36.33 Aligned_cols=107 Identities=17% Similarity=0.082 Sum_probs=50.9
Q ss_pred CCcEEECCCCCCCCCcchh--ccCCCCCcEEEccCCCCCc-cCcccc--------CCCCCCCEEeCCCCCCCCCC---CC
Q 047927 214 SLSVIRLDMNDLYSPVPEF--LADFSNLTSLYLSSCGLHG-AFPEKI--------LQLPTLETLDLSYNELLQGS---LP 279 (1005)
Q Consensus 214 ~L~~L~l~~n~~~~~~p~~--l~~l~~L~~L~L~~n~l~~-~~p~~l--------~~l~~L~~L~Ls~n~~~~~~---~~ 279 (1005)
.+++|....|...+..... +..-+..+.+++..-.-.. ..+... ...--+..+.++.+...... +.
T Consensus 355 R~q~l~~rdnnldgeg~~vgk~~~s~s~r~l~agrs~~kqvm~s~~~a~~v~k~~~~~g~l~el~ls~~~lka~l~s~in 434 (553)
T KOG4242|consen 355 RVQVLLQRDNNLDGEGGAVGKRKQSKSGRILKAGRSGDKQVMDSSTEAPPVSKKSRTHGVLAELSLSPGPLKAGLESAIN 434 (553)
T ss_pred eeeEeeccccccccccccccceeeccccccccccccCCceeccccccchhhhhhhcccccccCcccCCCcccccHHHHHH
Confidence 4777777777665554332 2233556666554432100 000000 01123555666666542211 11
Q ss_pred cccCCCCCcEEEcccccccc----cCchhhccCCCCCEEeecCCc
Q 047927 280 DFHQNLSLETLILSATNFSG----ILPDSIKNLKNLSRVEFYLCN 320 (1005)
Q Consensus 280 ~~~~~~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~l~~n~ 320 (1005)
....-+.+.+|++++|.... .+|.....-..++.+..+.|.
T Consensus 435 ~l~stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n~ 479 (553)
T KOG4242|consen 435 KLLSTQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNL 479 (553)
T ss_pred hhccCcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCCC
Confidence 23345678888888886652 234444444455555544443
No 93
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=42.09 E-value=7.6 Score=43.80 Aligned_cols=63 Identities=27% Similarity=0.187 Sum_probs=31.3
Q ss_pred cccEEECCCCcCCcccc--CccCCCCCccEEeCCCCeecccCcccccCC--CCCCEEECCCCcCCCC
Q 047927 674 QLGVLNLRRNNLNGTVS--ATFPANCSLRTLDLNGNQLEGMVPKSLANC--SVLEILDLGNNQFDDT 736 (1005)
Q Consensus 674 ~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l--~~L~~L~Ls~N~l~~~ 736 (1005)
.+..++|++|++..+.. .--...++|..|+|++|...-....++... ..|++|.+.+|++...
T Consensus 219 ~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 219 EILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTT 285 (585)
T ss_pred ceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccc
Confidence 56667777777654321 111223566677777762111122233322 2355666666666543
No 94
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=34.57 E-value=22 Score=40.38 Aligned_cols=31 Identities=35% Similarity=0.434 Sum_probs=17.2
Q ss_pred cceEEcCCccCcCCCC----CCCCCceeEEECcCC
Q 047927 506 LTTLSLASCKLSAIPN----LRKQTKLYHLDLSDN 536 (1005)
Q Consensus 506 L~~L~L~~n~l~~l~~----l~~l~~L~~L~Ls~n 536 (1005)
+..+++++|++..+.. -...|+|+.|+|++|
T Consensus 220 i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 220 ILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred eeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 4444555554444443 233467777777777
No 95
>PF10808 DUF2542: Protein of unknown function (DUF2542) ; InterPro: IPR020155 This entry represents transmembrane proteins with no known function.; GO: 0016021 integral to membrane
Probab=30.70 E-value=25 Score=27.71 Aligned_cols=25 Identities=20% Similarity=0.406 Sum_probs=21.0
Q ss_pred ceeeeehhHHHHHHHHHhheeeeec
Q 047927 980 WFFMAMAIGFAVGFGSVVAPLMFSR 1004 (1005)
Q Consensus 980 ~~~~~~~~~~~~~~~~~~~~~~~~~ 1004 (1005)
|+|+.+.+|+++++...+++++|+|
T Consensus 55 wsYi~~Y~G~gil~~gm~IyllFyR 79 (79)
T PF10808_consen 55 WSYIFAYFGCGILSLGMIIYLLFYR 79 (79)
T ss_pred HHHHHHHHHHHHHHHHHhheeEEeC
Confidence 4788888899998888888888887
No 96
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=28.44 E-value=33 Score=20.96 Aligned_cols=11 Identities=45% Similarity=0.634 Sum_probs=5.4
Q ss_pred CCCcEEEcccC
Q 047927 105 TNLTTLNLSNA 115 (1005)
Q Consensus 105 ~~L~~L~Ls~n 115 (1005)
++|++|+|++|
T Consensus 2 ~~L~~L~l~~C 12 (26)
T smart00367 2 PNLRELDLSGC 12 (26)
T ss_pred CCCCEeCCCCC
Confidence 34455555544
No 97
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=28.20 E-value=64 Score=22.41 Aligned_cols=22 Identities=18% Similarity=0.134 Sum_probs=9.9
Q ss_pred eeeeehhHHHHHHHHHhheeee
Q 047927 981 FFMAMAIGFAVGFGSVVAPLMF 1002 (1005)
Q Consensus 981 ~~~~~~~~~~~~~~~~~~~~~~ 1002 (1005)
...++++..++...+..+++++
T Consensus 13 Ia~~VvVPV~vI~~vl~~~l~~ 34 (40)
T PF08693_consen 13 IAVGVVVPVGVIIIVLGAFLFF 34 (40)
T ss_pred EEEEEEechHHHHHHHHHHhhe
Confidence 4444555544444444334443
No 98
>PRK10132 hypothetical protein; Provisional
Probab=26.67 E-value=28 Score=30.53 Aligned_cols=22 Identities=27% Similarity=0.392 Sum_probs=13.1
Q ss_pred eehhHHHHHHHHHhheeeeecC
Q 047927 984 AMAIGFAVGFGSVVAPLMFSRK 1005 (1005)
Q Consensus 984 ~~~~~~~~~~~~~~~~~~~~~~ 1005 (1005)
|..+|++.|+++++|+++.+||
T Consensus 87 w~svgiaagvG~llG~Ll~RR~ 108 (108)
T PRK10132 87 WCSVGTAAAVGIFIGALLSLRK 108 (108)
T ss_pred HHHHHHHHHHHHHHHHHHhccC
Confidence 4455555555666666677765
No 99
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=25.05 E-value=61 Score=30.12 Aligned_cols=23 Identities=13% Similarity=0.248 Sum_probs=9.5
Q ss_pred eeeehhHHHHHHHHHhheeeeec
Q 047927 982 FMAMAIGFAVGFGSVVAPLMFSR 1004 (1005)
Q Consensus 982 ~~~~~~~~~~~~~~~~~~~~~~~ 1004 (1005)
.+++|+|.++.+++++++++||+
T Consensus 53 GvVVGVGg~ill~il~lvf~~c~ 75 (154)
T PF04478_consen 53 GVVVGVGGPILLGILALVFIFCI 75 (154)
T ss_pred EEEecccHHHHHHHHHhheeEEE
Confidence 33344444444333333444443
No 100
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=20.75 E-value=65 Score=44.46 Aligned_cols=33 Identities=27% Similarity=0.387 Sum_probs=29.2
Q ss_pred eCCCCeecccCcccccCCCCCCEEECCCCcCCC
Q 047927 703 DLNGNQLEGMVPKSLANCSVLEILDLGNNQFDD 735 (1005)
Q Consensus 703 ~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 735 (1005)
||++|+|+.+.+..|..+++|+.|+|++|++..
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~C 33 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFEC 33 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcccc
Confidence 588999998888889999999999999999874
Done!