Query 047927
Match_columns 1005
No_of_seqs 821 out of 5525
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 07:37:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047927.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047927hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 3.7E-90 1.3E-94 847.9 49.1 716 2-963 3-751 (768)
2 3rgz_A Protein brassinosteroid 100.0 5.9E-69 2E-73 659.8 46.6 639 189-936 50-700 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 1E-55 3.5E-60 538.6 51.8 595 193-934 8-627 (680)
4 1ziw_A TOLL-like receptor 3; i 100.0 4.7E-54 1.6E-58 524.0 52.2 583 261-956 25-626 (680)
5 3t6q_A CD180 antigen; protein- 100.0 7.7E-52 2.6E-56 497.6 39.9 525 189-934 33-565 (606)
6 3t6q_A CD180 antigen; protein- 100.0 1E-49 3.4E-54 479.2 43.1 485 207-795 75-571 (606)
7 3vq2_A TLR4, TOLL-like recepto 100.0 5E-50 1.7E-54 481.8 38.4 542 216-934 14-563 (606)
8 3j0a_A TOLL-like receptor 5; m 100.0 1.2E-49 4.1E-54 493.8 38.0 567 217-962 8-590 (844)
9 3vq2_A TLR4, TOLL-like recepto 100.0 3E-49 1E-53 475.1 35.1 528 189-795 32-569 (606)
10 4eco_A Uncharacterized protein 100.0 4.8E-50 1.6E-54 480.3 26.3 518 6-687 25-601 (636)
11 3j0a_A TOLL-like receptor 5; m 100.0 8E-46 2.7E-50 459.4 39.1 459 199-736 83-562 (844)
12 4ecn_A Leucine-rich repeat pro 100.0 7E-47 2.4E-51 458.1 28.5 492 4-565 262-864 (876)
13 2z63_A TOLL-like receptor 4, v 100.0 1.6E-45 5.6E-50 439.6 38.3 239 640-937 298-539 (570)
14 2z81_A CD282 antigen, TOLL-lik 100.0 1.8E-44 6E-49 428.3 33.1 475 287-935 28-516 (549)
15 2z63_A TOLL-like receptor 4, v 100.0 3.6E-44 1.2E-48 428.0 35.1 504 189-792 28-539 (570)
16 2z81_A CD282 antigen, TOLL-lik 100.0 2.5E-43 8.5E-48 418.4 36.3 493 217-909 9-514 (549)
17 4eco_A Uncharacterized protein 100.0 8.6E-44 3E-48 426.1 19.5 272 577-931 305-602 (636)
18 4g8a_A TOLL-like receptor 4; l 100.0 4.3E-41 1.5E-45 407.6 40.7 526 189-795 52-591 (635)
19 2z7x_B TOLL-like receptor 1, v 100.0 4.1E-42 1.4E-46 404.6 26.6 452 408-934 3-486 (520)
20 2z7x_B TOLL-like receptor 1, v 100.0 1.3E-41 4.5E-46 400.3 30.7 462 192-795 3-493 (520)
21 4g8a_A TOLL-like receptor 4; l 100.0 1E-40 3.6E-45 404.2 37.5 543 217-933 35-584 (635)
22 4ecn_A Leucine-rich repeat pro 100.0 1.5E-41 5E-46 411.6 29.0 391 391-930 435-865 (876)
23 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.5E-39 5E-44 385.8 24.6 435 430-934 52-515 (562)
24 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.9E-38 6.3E-43 376.3 32.3 463 189-792 31-518 (562)
25 1jl5_A Outer protein YOPM; leu 100.0 2.4E-38 8.2E-43 361.7 21.8 304 353-735 8-311 (454)
26 1jl5_A Outer protein YOPM; leu 100.0 7.9E-38 2.7E-42 357.3 25.0 378 430-936 11-418 (454)
27 3v47_A TOLL-like receptor 5B a 100.0 3.8E-37 1.3E-41 356.0 27.6 374 483-938 14-417 (455)
28 1ogq_A PGIP-2, polygalacturona 100.0 4.4E-38 1.5E-42 342.4 18.1 293 6-344 1-302 (313)
29 3v47_A TOLL-like receptor 5B a 100.0 3.8E-35 1.3E-39 339.2 30.8 374 381-795 30-420 (455)
30 3bz5_A Internalin-J, INLJ; leu 100.0 8.5E-35 2.9E-39 332.6 25.6 361 445-935 33-393 (457)
31 1ogq_A PGIP-2, polygalacturona 100.0 2.6E-35 8.7E-40 320.6 18.8 259 623-960 50-312 (313)
32 3bz5_A Internalin-J, INLJ; leu 100.0 4.5E-35 1.6E-39 334.8 20.6 128 628-793 269-396 (457)
33 2id5_A Lingo-1, leucine rich r 100.0 3.2E-34 1.1E-38 333.1 24.9 347 529-956 14-360 (477)
34 1o6v_A Internalin A; bacterial 100.0 5.7E-33 2E-37 320.8 33.1 347 452-931 44-390 (466)
35 1o6v_A Internalin A; bacterial 100.0 2.1E-32 7.3E-37 316.0 31.9 347 428-907 44-390 (466)
36 2id5_A Lingo-1, leucine rich r 100.0 1.2E-32 4.1E-37 320.0 24.6 321 580-954 14-335 (477)
37 3oja_B Anopheles plasmodium-re 100.0 2.1E-31 7.3E-36 317.1 27.7 337 452-957 49-385 (597)
38 3o6n_A APL1; leucine-rich repe 100.0 7.5E-31 2.6E-35 296.0 29.1 336 452-956 43-378 (390)
39 4fmz_A Internalin; leucine ric 100.0 3.8E-30 1.3E-34 285.6 30.7 219 643-929 128-346 (347)
40 3o6n_A APL1; leucine-rich repe 100.0 7.4E-30 2.5E-34 287.9 27.6 349 33-468 3-353 (390)
41 4fcg_A Uncharacterized protein 100.0 4.1E-31 1.4E-35 289.0 15.4 278 7-346 23-314 (328)
42 4fmz_A Internalin; leucine ric 100.0 1.3E-28 4.4E-33 273.3 30.1 307 76-443 40-346 (347)
43 3oja_B Anopheles plasmodium-re 100.0 7.4E-29 2.5E-33 295.3 29.4 347 32-468 8-359 (597)
44 2ft3_A Biglycan; proteoglycan, 100.0 3.5E-29 1.2E-33 275.5 24.3 288 578-927 34-331 (332)
45 1xku_A Decorin; proteoglycan, 100.0 8E-29 2.7E-33 272.5 26.6 248 623-930 52-307 (330)
46 1z7x_W Ribonuclease inhibitor; 100.0 2.7E-32 9.1E-37 316.0 -2.4 245 640-931 163-442 (461)
47 1xku_A Decorin; proteoglycan, 100.0 8.6E-28 3E-32 264.2 26.8 290 577-927 31-330 (330)
48 1z7x_W Ribonuclease inhibitor; 100.0 3.8E-31 1.3E-35 306.4 -1.5 240 646-931 141-413 (461)
49 2ft3_A Biglycan; proteoglycan, 100.0 5.5E-28 1.9E-32 265.9 22.1 266 599-929 34-307 (332)
50 2z80_A TOLL-like receptor 2, v 100.0 2E-28 6.9E-33 271.9 17.6 258 623-934 52-319 (353)
51 2z66_A Variable lymphocyte rec 99.9 1.8E-27 6.1E-32 258.8 19.0 233 647-933 28-265 (306)
52 1wwl_A Monocyte differentiatio 99.9 3.2E-29 1.1E-33 272.7 4.8 252 622-931 42-311 (312)
53 4fcg_A Uncharacterized protein 99.9 1.5E-27 5.1E-32 260.8 17.7 225 647-929 81-314 (328)
54 3zyi_A Leucine-rich repeat-con 99.9 9.5E-27 3.3E-31 267.6 24.2 250 627-933 58-307 (452)
55 1ozn_A Reticulon 4 receptor; N 99.9 3.4E-27 1.2E-31 253.5 18.6 210 674-934 33-243 (285)
56 3zyj_A Leucine-rich repeat-con 99.9 1.1E-26 3.6E-31 266.2 22.9 233 647-933 64-296 (440)
57 2z66_A Variable lymphocyte rec 99.9 6.2E-27 2.1E-31 254.5 18.8 259 623-935 28-293 (306)
58 3ogk_B Coronatine-insensitive 99.9 2.1E-29 7.3E-34 301.6 -2.1 438 40-493 39-527 (592)
59 1ozn_A Reticulon 4 receptor; N 99.9 1.8E-26 6.3E-31 247.8 19.6 253 626-935 14-267 (285)
60 3o53_A Protein LRIM1, AGAP0063 99.9 1.3E-27 4.4E-32 260.6 7.5 250 618-934 29-281 (317)
61 2z80_A TOLL-like receptor 2, v 99.9 9.3E-27 3.2E-31 258.5 13.3 238 621-909 74-318 (353)
62 3zyi_A Leucine-rich repeat-con 99.9 1.8E-25 6.1E-30 256.9 23.7 230 623-907 75-305 (452)
63 3zyj_A Leucine-rich repeat-con 99.9 3.2E-25 1.1E-29 253.9 23.6 229 623-906 64-293 (440)
64 1wwl_A Monocyte differentiatio 99.9 2E-27 6.7E-32 258.5 4.1 207 645-907 93-311 (312)
65 3o53_A Protein LRIM1, AGAP0063 99.9 7.3E-26 2.5E-30 246.7 14.4 243 625-933 12-255 (317)
66 3ogk_B Coronatine-insensitive 99.9 1.5E-27 5.2E-32 285.5 1.2 350 235-586 162-547 (592)
67 3g06_A SSPH2 (leucine-rich rep 99.9 2.3E-24 7.7E-29 253.1 27.7 262 553-934 41-302 (622)
68 3oja_A Leucine-rich immune mol 99.9 2E-26 6.9E-31 265.8 10.1 216 648-929 35-250 (487)
69 3g06_A SSPH2 (leucine-rich rep 99.9 3.5E-24 1.2E-28 251.5 26.6 268 527-916 41-308 (622)
70 2z62_A TOLL-like receptor 4, v 99.9 1.1E-24 3.6E-29 232.8 20.2 211 674-936 29-244 (276)
71 3oja_A Leucine-rich immune mol 99.9 2.3E-25 7.9E-30 256.9 14.9 236 622-924 33-270 (487)
72 2z62_A TOLL-like receptor 4, v 99.9 2.8E-23 9.5E-28 221.8 20.4 213 647-909 28-241 (276)
73 2o6q_A Variable lymphocyte rec 99.9 7.7E-23 2.6E-27 217.3 23.6 207 648-934 17-223 (270)
74 2p1m_B Transport inhibitor res 99.9 3.8E-27 1.3E-31 282.3 -15.4 459 40-537 32-542 (594)
75 2p1m_B Transport inhibitor res 99.9 4.7E-25 1.6E-29 264.1 2.2 387 428-929 103-519 (594)
76 3rfs_A Internalin B, repeat mo 99.9 2.8E-23 9.7E-28 220.8 14.9 183 693-935 59-241 (272)
77 4glp_A Monocyte differentiatio 99.9 2E-23 6.8E-28 226.8 12.9 230 648-930 65-308 (310)
78 3rfs_A Internalin B, repeat mo 99.9 8.2E-23 2.8E-27 217.2 17.2 210 643-916 37-246 (272)
79 3goz_A Leucine-rich repeat-con 99.9 5.1E-24 1.8E-28 236.9 5.8 260 628-933 3-301 (362)
80 1p9a_G Platelet glycoprotein I 99.9 5.2E-22 1.8E-26 212.5 21.0 206 643-932 6-211 (290)
81 1p9a_G Platelet glycoprotein I 99.9 2.2E-21 7.6E-26 207.6 21.8 214 573-795 6-219 (290)
82 2o6q_A Variable lymphocyte rec 99.9 4.6E-21 1.6E-25 203.5 23.5 206 578-788 17-222 (270)
83 2ca6_A RAN GTPase-activating p 99.9 1.4E-23 4.6E-28 236.1 3.4 248 638-933 23-320 (386)
84 3m19_A Variable lymphocyte rec 99.9 3.4E-21 1.2E-25 202.1 19.7 89 846-934 109-197 (251)
85 3goz_A Leucine-rich repeat-con 99.9 5.5E-23 1.9E-27 228.5 6.3 262 603-913 3-305 (362)
86 2ast_B S-phase kinase-associat 99.9 1.4E-22 4.7E-27 223.6 6.8 250 625-935 49-312 (336)
87 1h6u_A Internalin H; cell adhe 99.9 1.2E-20 4.1E-25 204.1 19.8 194 644-930 38-231 (308)
88 2xwt_C Thyrotropin receptor; s 99.9 1.5E-21 5E-26 203.4 11.9 196 674-926 32-236 (239)
89 2ca6_A RAN GTPase-activating p 99.8 2.2E-22 7.4E-27 226.3 5.5 238 621-909 30-320 (386)
90 2xwt_C Thyrotropin receptor; s 99.8 4.5E-21 1.5E-25 199.7 13.9 197 648-903 32-237 (239)
91 4glp_A Monocyte differentiatio 99.8 4E-21 1.4E-25 208.6 13.6 205 623-906 91-308 (310)
92 3m19_A Variable lymphocyte rec 99.8 8.8E-20 3E-24 191.3 20.6 161 623-787 35-195 (251)
93 1h6u_A Internalin H; cell adhe 99.8 7.8E-20 2.7E-24 197.7 19.8 147 622-784 40-186 (308)
94 2ast_B S-phase kinase-associat 99.8 1.4E-21 4.7E-26 215.6 5.8 234 623-914 70-315 (336)
95 3cvr_A Invasion plasmid antige 99.8 3.1E-20 1.1E-24 215.0 15.1 188 648-916 60-254 (571)
96 3cvr_A Invasion plasmid antige 99.8 7.1E-20 2.4E-24 212.0 17.2 183 674-935 60-249 (571)
97 2o6s_A Variable lymphocyte rec 99.8 1E-19 3.4E-24 185.0 14.4 135 647-785 28-162 (208)
98 4ay9_X Follicle-stimulating ho 99.8 2.7E-19 9.2E-24 197.6 17.8 239 628-927 14-257 (350)
99 2o6s_A Variable lymphocyte rec 99.8 1.8E-19 6.3E-24 183.0 14.1 181 650-917 10-190 (208)
100 2v70_A SLIT-2, SLIT homolog 2 99.8 3.5E-19 1.2E-23 182.0 13.1 89 846-934 83-171 (220)
101 4ay9_X Follicle-stimulating ho 99.8 1.2E-18 4.1E-23 192.4 15.9 225 623-904 30-258 (350)
102 2xot_A Amphoterin-induced prot 99.8 1.9E-18 6.6E-23 191.5 14.2 105 650-759 21-126 (361)
103 2v9t_B SLIT homolog 2 protein 99.8 2.4E-18 8.2E-23 175.8 13.7 72 862-933 98-169 (220)
104 1h6t_A Internalin B; cell adhe 99.8 3.3E-18 1.1E-22 183.1 15.3 187 651-930 28-214 (291)
105 2v70_A SLIT-2, SLIT homolog 2 99.8 1E-17 3.4E-22 171.2 17.2 162 627-795 15-177 (220)
106 2v9t_B SLIT homolog 2 protein 99.8 1.3E-17 4.3E-22 170.4 16.9 162 627-795 15-176 (220)
107 3e6j_A Variable lymphocyte rec 99.7 2.3E-17 7.7E-22 169.9 17.7 90 844-934 88-177 (229)
108 1m9s_A Internalin B; cell inva 99.7 6.8E-18 2.3E-22 198.0 15.0 191 648-907 22-212 (605)
109 1h6t_A Internalin B; cell adhe 99.7 1.2E-17 4.1E-22 178.8 15.2 190 627-909 28-217 (291)
110 1m9s_A Internalin B; cell inva 99.7 2.6E-17 8.9E-22 193.1 17.5 207 644-917 40-259 (605)
111 3e6j_A Variable lymphocyte rec 99.7 8.2E-17 2.8E-21 165.6 17.6 155 626-788 22-176 (229)
112 1w8a_A SLIT protein; signaling 99.7 1.9E-17 6.6E-22 165.2 10.2 116 842-957 52-167 (192)
113 1xeu_A Internalin C; cellular 99.7 3.6E-17 1.2E-21 172.1 12.8 167 675-931 21-187 (263)
114 2xot_A Amphoterin-induced prot 99.7 6.2E-17 2.1E-21 179.4 15.0 162 625-790 41-208 (361)
115 1dce_A Protein (RAB geranylger 99.7 1.5E-19 5E-24 211.0 -6.5 78 843-922 485-566 (567)
116 4ezg_A Putative uncharacterize 99.7 4.2E-17 1.4E-21 163.8 10.9 155 694-930 41-195 (197)
117 1dce_A Protein (RAB geranylger 99.7 1.3E-19 4.6E-24 211.3 -9.2 206 644-936 346-553 (567)
118 1xeu_A Internalin C; cellular 99.7 4.7E-17 1.6E-21 171.2 8.5 124 646-784 18-141 (263)
119 4b8c_D Glucose-repressible alc 99.7 9.9E-18 3.4E-22 202.1 1.8 155 623-791 173-336 (727)
120 4ezg_A Putative uncharacterize 99.7 5.4E-16 1.9E-20 155.6 13.7 153 621-785 42-195 (197)
121 1w8a_A SLIT protein; signaling 99.7 7.1E-16 2.4E-20 153.8 13.7 138 650-794 11-149 (192)
122 4b8c_D Glucose-repressible alc 99.6 5.5E-17 1.9E-21 195.6 6.1 116 640-761 217-332 (727)
123 2wfh_A SLIT homolog 2 protein 99.6 1.1E-14 3.6E-19 145.1 14.2 138 650-795 13-150 (193)
124 2ell_A Acidic leucine-rich nuc 99.6 1.4E-14 4.6E-19 141.3 12.8 83 847-929 74-160 (168)
125 2o6r_A Variable lymphocyte rec 99.6 3.7E-14 1.3E-18 139.5 15.0 133 649-788 9-141 (177)
126 3sb4_A Hypothetical leucine ri 99.5 9.9E-15 3.4E-19 159.5 11.0 103 645-751 224-327 (329)
127 2je0_A Acidic leucine-rich nuc 99.5 2.5E-14 8.4E-19 136.3 12.0 39 862-900 107-148 (149)
128 2wfh_A SLIT homolog 2 protein 99.5 3.9E-14 1.3E-18 141.0 13.9 128 627-760 14-141 (193)
129 2ell_A Acidic leucine-rich nuc 99.5 1.2E-14 4.1E-19 141.6 9.3 133 646-784 23-160 (168)
130 2je0_A Acidic leucine-rich nuc 99.5 1.2E-14 4.1E-19 138.5 7.0 127 647-779 17-148 (149)
131 2o6r_A Variable lymphocyte rec 99.5 1.3E-13 4.5E-18 135.5 14.1 131 626-761 10-140 (177)
132 3sb4_A Hypothetical leucine ri 99.5 2.3E-14 7.9E-19 156.6 7.2 247 623-930 25-311 (329)
133 3g39_A Variable lymphocyte rec 99.5 1.3E-13 4.4E-18 134.1 10.1 92 844-935 30-121 (170)
134 1ds9_A Outer arm dynein; leuci 99.5 1.2E-15 4.1E-20 153.2 -5.3 83 843-929 92-185 (198)
135 1a9n_A U2A', U2A'; complex (nu 99.4 1.9E-13 6.6E-18 134.1 8.4 134 642-784 14-153 (176)
136 2r9u_A Variable lymphocyte rec 99.4 3.6E-13 1.2E-17 131.3 10.1 91 844-934 33-123 (174)
137 1ds9_A Outer arm dynein; leuci 99.4 3.6E-15 1.2E-19 149.7 -6.1 63 842-906 113-186 (198)
138 4fdw_A Leucine rich hypothetic 99.4 6.1E-12 2.1E-16 140.0 19.4 267 454-783 113-382 (401)
139 1a9n_A U2A', U2A'; complex (nu 99.4 6.3E-13 2.1E-17 130.4 8.7 130 622-759 18-154 (176)
140 3g39_A Variable lymphocyte rec 99.4 2E-12 6.9E-17 125.6 11.9 104 649-757 11-114 (170)
141 2r9u_A Variable lymphocyte rec 99.3 4.6E-12 1.6E-16 123.4 11.9 104 650-758 15-118 (174)
142 4fdw_A Leucine rich hypothetic 99.3 2.7E-11 9.3E-16 134.8 18.6 241 624-927 136-381 (401)
143 4fs7_A Uncharacterized protein 99.3 1.4E-10 4.8E-15 129.9 20.4 306 205-530 86-392 (394)
144 3un9_A NLR family member X1; l 99.2 6.2E-13 2.1E-17 146.6 -1.1 88 843-930 182-284 (372)
145 4fs7_A Uncharacterized protein 99.2 2.7E-10 9.4E-15 127.5 20.0 66 249-316 59-124 (394)
146 3un9_A NLR family member X1; l 99.2 1.1E-12 3.9E-17 144.5 -0.2 89 843-931 154-254 (372)
147 2ifg_A High affinity nerve gro 99.1 3.3E-10 1.1E-14 124.7 12.4 102 651-757 12-115 (347)
148 2ifg_A High affinity nerve gro 99.1 3.5E-10 1.2E-14 124.5 10.8 105 627-736 12-118 (347)
149 4gt6_A Cell surface protein; l 99.0 1.6E-08 5.6E-13 113.0 22.5 133 640-783 258-390 (394)
150 4gt6_A Cell surface protein; l 98.8 1.1E-07 3.9E-12 106.2 20.6 287 189-489 64-367 (394)
151 2ra8_A Uncharacterized protein 98.7 1.4E-08 4.7E-13 110.7 6.7 59 867-927 278-341 (362)
152 2ra8_A Uncharacterized protein 98.7 2.1E-08 7.3E-13 109.1 7.6 142 737-930 164-321 (362)
153 4h09_A Hypothetical leucine ri 98.6 3.1E-06 1.1E-10 94.0 21.7 284 189-487 46-341 (379)
154 4h09_A Hypothetical leucine ri 98.5 7.1E-06 2.4E-10 91.0 23.6 87 640-730 256-342 (379)
155 3rw6_A Nuclear RNA export fact 98.4 9.4E-08 3.2E-12 98.3 3.3 84 849-934 148-238 (267)
156 3rw6_A Nuclear RNA export fact 98.4 2.5E-07 8.6E-12 95.1 5.3 80 841-922 167-257 (267)
157 1io0_A Tropomodulin; LRR prote 98.3 8.7E-08 3E-12 94.0 1.2 122 75-200 31-162 (185)
158 1io0_A Tropomodulin; LRR prote 98.2 3.4E-07 1.2E-11 89.7 3.2 15 125-139 32-46 (185)
159 3e4g_A ATP synthase subunit S, 97.8 8.1E-06 2.8E-10 77.4 2.7 84 237-320 61-150 (176)
160 3e4g_A ATP synthase subunit S, 97.7 7.2E-06 2.5E-10 77.8 1.4 36 105-140 61-96 (176)
161 1pgv_A TMD-1, tropomodulin TMD 97.0 0.00036 1.2E-08 67.5 3.8 46 157-202 37-83 (197)
162 3rfe_A Platelet glycoprotein I 97.0 0.00083 2.8E-08 60.7 6.0 58 872-931 12-70 (130)
163 1pgv_A TMD-1, tropomodulin TMD 96.9 0.00056 1.9E-08 66.1 4.4 91 104-198 40-135 (197)
164 3rfe_A Platelet glycoprotein I 96.2 0.0076 2.6E-07 54.3 6.5 37 698-734 32-68 (130)
165 2lz0_A Uncharacterized protein 45.5 20 0.00068 29.8 4.1 45 685-730 8-52 (100)
166 2lz0_A Uncharacterized protein 40.8 24 0.00083 29.3 3.9 50 706-756 5-54 (100)
167 2llm_A Amyloid beta A4 protein 21.1 30 0.001 23.2 0.0 21 985-1005 23-43 (43)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=3.7e-90 Score=847.95 Aligned_cols=716 Identities=30% Similarity=0.439 Sum_probs=480.4
Q ss_pred ccccCCCcHHHHHHHHHHhhhCCCCCCCcccccCCCCCCCCcccceeEECCCCCEEEEEcCCCCcccc---cCCCccccc
Q 047927 2 VLVSGQCQSDQQSLLLQMKSRLTFDSSVSFRMVQWSQSNDCCTWSGVDCDEAGRVIGLDLSEESISAG---IDNSSSLFS 78 (1005)
Q Consensus 2 ~~~~~~~~~~~~~~ll~~k~~~~~~~~~~~~~~~w~~~~~~c~w~gv~c~~~~~v~~L~L~~~~l~~~---~~~~~~l~~ 78 (1005)
+++.+++.++||+|||+||+++. ||. ++++|+.+.+||+|.||+|+ .+||++|||+++.+.|. + ++++.+
T Consensus 3 ~~~~~~~~~~~~~all~~k~~~~-~~~---~l~~W~~~~~~C~w~gv~C~-~~~v~~L~L~~~~l~g~~~~l--~~~l~~ 75 (768)
T 3rgz_A 3 QASPSQSLYREIHQLISFKDVLP-DKN---LLPDWSSNKNPCTFDGVTCR-DDKVTSIDLSSKPLNVGFSAV--SSSLLS 75 (768)
T ss_dssp -----CCHHHHHHHHHHHHTTCS-CTT---SSTTCCTTSCGGGSTTEEEE-TTEEEEEECTTSCCCEEHHHH--HHHTTT
T ss_pred cCccccCCHHHHHHHHHHHhhCC-Ccc---cccCCCCCCCCcCCcceEEC-CCcEEEEECCCCCcCCccCcc--ChhHhc
Confidence 45667778899999999999997 453 78999878899999999998 68999999999999887 6 678999
Q ss_pred ccccceeecCCccCCCCCCCCcccCCCCCcEEEcccCCCcCCCcc--cccCCCCCcEEeCCCcccccCccccCCCChhhh
Q 047927 79 LKYLQSLNLAFNMFNATEIPSGLGNLTNLTTLNLSNAGFAGQIPI--QVSGMTRLVTLDLSGMYFVRAPLKLENPNLSGL 156 (1005)
Q Consensus 79 l~~L~~L~Ls~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~--~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~ 156 (1005)
+++|++++++.+.+. .+|+.++++++|++|||++|.+.+.+|. .++++++|++|++++|.+..
T Consensus 76 L~~L~~l~~~~~~~~--~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~------------- 140 (768)
T 3rgz_A 76 LTGLESLFLSNSHIN--GSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDF------------- 140 (768)
T ss_dssp CTTCCEEECTTSCEE--ECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEEC-------------
T ss_pred cCcccccCCcCCCcC--CCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCC-------------
Confidence 999999999998763 3678999999999999999999988888 88999999999888876432
Q ss_pred hhcCccCceeecCCccCCCchhhHHHHHhccCCCccEEEccCCCCCCCCCccc-cCCCCCcEEECCCCCCCCCcchh---
Q 047927 157 LQNLAELRELYLDGVNISAPGIEWCQALSSLVPKLQVLSLSGCFLSGPVDPSL-SNLRSLSVIRLDMNDLYSPVPEF--- 232 (1005)
Q Consensus 157 l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~L~~L~L~~n~~~~~~~~~l-~~l~~L~~L~l~~n~~~~~~p~~--- 232 (1005)
..|..+ .++++|++|++++|.+.+..|..
T Consensus 141 -----------------------------------------------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 173 (768)
T 3rgz_A 141 -----------------------------------------------PGKVSGGLKLNSLEVLDLSANSISGANVVGWVL 173 (768)
T ss_dssp -----------------------------------------------CSSCCSCCCCTTCSEEECCSSCCEEETHHHHHH
T ss_pred -----------------------------------------------cCCHHHhccCCCCCEEECCCCccCCcCChhhhh
Confidence 222222 45556666666666665555544
Q ss_pred ccCCCCCcEEEccCCCCCccCccccCCCCCCCEEeCCCCCCCCCCCCcccCCCCCcEEEcccccccccCchhhccCCCCC
Q 047927 233 LADFSNLTSLYLSSCGLHGAFPEKILQLPTLETLDLSYNELLQGSLPDFHQNLSLETLILSATNFSGILPDSIKNLKNLS 312 (1005)
Q Consensus 233 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 312 (1005)
+.++++|++|++++|.+++..|. ..+++|++|++++|.+ ++..|. ++++++|+
T Consensus 174 ~~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~l------------------------~~~~~~-l~~l~~L~ 226 (768)
T 3rgz_A 174 SDGCGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNF------------------------STGIPF-LGDCSALQ 226 (768)
T ss_dssp TTCCTTCCEEECCSSEEESCCBC--TTCTTCCEEECCSSCC------------------------CSCCCB-CTTCCSCC
T ss_pred hccCCCCCEEECCCCcccccCCc--ccCCcCCEEECcCCcC------------------------CCCCcc-cccCCCCC
Confidence 56666666666666666654432 5556666666665543 222222 34444444
Q ss_pred EEeecCCccCCCCCccCCCCCCCcEEECcCCcCccCCCcccccCcccEEECCCCcCcCCCCcccccccccccEEEcCCCc
Q 047927 313 RVEFYLCNFNGPIPTSMSDLSQLVYLDMSFNHFSGPIPSLHMFRNLAYLDLSYNIFTGGISSIGWEQLLNLFHVDLSHNN 392 (1005)
Q Consensus 313 ~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~ 392 (1005)
+|++++|.+.+.+|..++.+++|++|++++|.+.+.++.. .+++|++|++++|.+++.+|......+++|++|++++|.
T Consensus 227 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~-~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~ 305 (768)
T 3rgz_A 227 HLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL-PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNH 305 (768)
T ss_dssp EEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC-CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSE
T ss_pred EEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc-ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCc
Confidence 4444444444444444444444444444444444433333 334555555555555555554422234667777777777
Q ss_pred CCCccCccCCCCCCCCEEeCcCcccccccccccccccccCCEEeCCCCccCCCCCcc-ccCcCCCcEEECCCCcceeccc
Q 047927 393 LGGSIPQSLFELPMVQHLLLADNQFDGHVTEISNASSSLLDTLDLSDNNLEGPIPLS-FFELKNLKILLLSSNKFVGTIE 471 (1005)
Q Consensus 393 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~L~~n~l~~~~~ 471 (1005)
+++.+|..+..+++|++|++++|.+.+ .+|.. +..+++|++|++++|++.+.++
T Consensus 306 l~~~~p~~~~~l~~L~~L~L~~n~l~~-------------------------~ip~~~l~~l~~L~~L~Ls~n~l~~~~p 360 (768)
T 3rgz_A 306 FYGAVPPFFGSCSLLESLALSSNNFSG-------------------------ELPMDTLLKMRGLKVLDLSFNEFSGELP 360 (768)
T ss_dssp EEECCCGGGGGCTTCCEEECCSSEEEE-------------------------ECCHHHHTTCTTCCEEECCSSEEEECCC
T ss_pred CCCccchHHhcCCCccEEECCCCcccC-------------------------cCCHHHHhcCCCCCEEeCcCCccCcccc
Confidence 666666666666666666666555443 33332 4445555555555555554444
Q ss_pred hhHHHhcC-CCCeEeccCCeeeEecCCcccccCcccceEEcCCccCcCCCCCCCCCceeEEECcCCcCCCCCChhhhhhc
Q 047927 472 LDAIQRLR-NLFRLDLSYNRLAVVAGSSVYCFPPLLTTLSLASCKLSAIPNLRKQTKLYHLDLSDNQISGEIPNWLWKIG 550 (1005)
Q Consensus 472 ~~~l~~l~-~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~l~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~ 550 (1005)
. .+..++ +|++|++++|.+.......+. ...+++|++|++++|.+++.+|..+..
T Consensus 361 ~-~l~~l~~~L~~L~Ls~N~l~~~~~~~~~---------------------~~~~~~L~~L~L~~n~l~~~~p~~l~~-- 416 (768)
T 3rgz_A 361 E-SLTNLSASLLTLDLSSNNFSGPILPNLC---------------------QNPKNTLQELYLQNNGFTGKIPPTLSN-- 416 (768)
T ss_dssp T-THHHHTTTCSEEECCSSEEEEECCTTTT---------------------CSTTCCCCEEECCSSEEEEECCGGGGG--
T ss_pred H-HHHhhhcCCcEEEccCCCcCCCcChhhh---------------------hcccCCccEEECCCCccccccCHHHhc--
Confidence 2 233443 555555555544432111100 011345566666666655555544322
Q ss_pred CCcccEEeCCCCcccCCCCCCccccCCcccEEEeccCcccccCCCCCCCcceeeCcCCcCccCCCcchhcccCceEEEEe
Q 047927 551 KDSFNHLNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIPPLPPNAAYVDYSGNNFTSSIPVDIGSFMSLSIFFSF 630 (1005)
Q Consensus 551 ~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ls~n~~~~~~p~~~~~~~~~L~~L~l 630 (1005)
+++|++|++++|++++.+| ..+. .++.|++|++
T Consensus 417 -------------------------l~~L~~L~Ls~N~l~~~~p---------------------~~l~-~l~~L~~L~L 449 (768)
T 3rgz_A 417 -------------------------CSELVSLHLSFNYLSGTIP---------------------SSLG-SLSKLRDLKL 449 (768)
T ss_dssp -------------------------CTTCCEEECCSSEEESCCC---------------------GGGG-GCTTCCEEEC
T ss_pred -------------------------CCCCCEEECcCCcccCccc---------------------HHHh-cCCCCCEEEC
Confidence 3445555555555544333 1222 2445555666
Q ss_pred cCCcccccCChhhhccCCCCeEEccCccccccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCccEEeCCCCeec
Q 047927 631 SKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLE 710 (1005)
Q Consensus 631 ~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 710 (1005)
++|.+++.+|..+..+++|++|++++|++++.+|..+..++ +|++|++++|++++.+|..+..+++|++|+|++|+++
T Consensus 450 ~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~--~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 527 (768)
T 3rgz_A 450 WLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCT--NLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFS 527 (768)
T ss_dssp CSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCT--TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCE
T ss_pred CCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCC--CCCEEEccCCccCCcCChHHhcCCCCCEEECCCCccc
Confidence 66666666666677777777777777777777777777766 6777777777777777777777777777777777777
Q ss_pred ccCcccccCCCCCCEEECCCCcCCCCcchhhhcCCCCcEEecCCCc----------------------CCcccCCCCCCC
Q 047927 711 GMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNN----------------------FFGNISCPRYNV 768 (1005)
Q Consensus 711 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~----------------------l~~~~~~~~~~~ 768 (1005)
+.+|..+..+++|++|++++|+++|.+|.++.....+..+++..+. +.+.. +..+.
T Consensus 528 ~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 605 (768)
T 3rgz_A 528 GNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIR--SEQLN 605 (768)
T ss_dssp EECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCC--GGGGG
T ss_pred CcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccccccccccccccc--chhhh
Confidence 7777777777777777777777777777776665555444333210 11111 22333
Q ss_pred CCCCccEEEccCCcccccCChHHHhhhhhhhhccCCchhhhchhhheecccccccccccEEEEEcchHHHHHHhcccceE
Q 047927 769 SWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTS 848 (1005)
Q Consensus 769 ~l~~L~~L~ls~N~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 848 (1005)
.++.++.++++.|.+.|.+|.. +..++.|+.
T Consensus 606 ~l~~~~~~~l~~~~~~g~~~~~-------------------------------------------------~~~l~~L~~ 636 (768)
T 3rgz_A 606 RLSTRNPCNITSRVYGGHTSPT-------------------------------------------------FDNNGSMMF 636 (768)
T ss_dssp GGGGTCCSCTTSCEEEEECCCS-------------------------------------------------CSSSBCCCE
T ss_pred ccccccccccccceecccCchh-------------------------------------------------hhccccccE
Confidence 3444445555555555555532 124678999
Q ss_pred EECCCCeeeccCcccccCCCCCCEEECCCCcCcccCchhhhcCCCCCEEeCCCCcCcccCcccccCCCCCCeEEccCCcc
Q 047927 849 IDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLNLSYNHL 928 (1005)
Q Consensus 849 L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l 928 (1005)
||||+|+++|.+|++|+++++|++|||++|+++|.||+.++++++|++||||+|+++|.||..++++++|++||+|+|+|
T Consensus 637 LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l 716 (768)
T 3rgz_A 637 LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNL 716 (768)
T ss_dssp EECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEE
T ss_pred EECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCcccccccccccCCCCCCCCCCCCCCCC
Q 047927 929 VGRIPTSTQLQSFLATSFEGNDRLWGPPLNVCPTN 963 (1005)
Q Consensus 929 ~g~ip~~~~~~~~~~~~~~gn~~lc~~~~~~c~~~ 963 (1005)
+|.||..+||.+|...+|.||++|||+|+..|...
T Consensus 717 ~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~~C~~~ 751 (768)
T 3rgz_A 717 SGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPS 751 (768)
T ss_dssp EEECCSSSSGGGSCGGGGCSCTEEESTTSCCCCSC
T ss_pred cccCCCchhhccCCHHHhcCCchhcCCCCcCCCCC
Confidence 99999999999999999999999999998889653
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=5.9e-69 Score=659.85 Aligned_cols=639 Identities=31% Similarity=0.398 Sum_probs=476.2
Q ss_pred CCccEEEccCCCCCCC---CCccccCCCCCcEEECCCCCCCCCcchhccCCCCCcEEEccCCCCCccCcc--ccCCCCCC
Q 047927 189 PKLQVLSLSGCFLSGP---VDPSLSNLRSLSVIRLDMNDLYSPVPEFLADFSNLTSLYLSSCGLHGAFPE--KILQLPTL 263 (1005)
Q Consensus 189 ~~L~~L~L~~n~~~~~---~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~--~l~~l~~L 263 (1005)
.+++.|+|+++.+.|. +++++.++++|+.++++.+.+.. +|..++.+++|++|+|++|.+++.+|. .++++++|
T Consensus 50 ~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~~-l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L 128 (768)
T 3rgz_A 50 DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHING-SVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGL 128 (768)
T ss_dssp TEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEEE-CCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTC
T ss_pred CcEEEEECCCCCcCCccCccChhHhccCcccccCCcCCCcCC-CchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCC
Confidence 5778888888888887 77888888888888888876532 456788899999999999998888887 88889999
Q ss_pred CEEeCCCCCCCCCCCCcc-cCCCCCcEEEcccccccccCchh---hccCCCCCEEeecCCccCCCCCccCCCCCCCcEEE
Q 047927 264 ETLDLSYNELLQGSLPDF-HQNLSLETLILSATNFSGILPDS---IKNLKNLSRVEFYLCNFNGPIPTSMSDLSQLVYLD 339 (1005)
Q Consensus 264 ~~L~Ls~n~~~~~~~~~~-~~~~~L~~L~L~~n~l~~~~p~~---l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~ 339 (1005)
++|++++|.+.......+ ..+++|++|++++|.+++..|.. +.++++|++|++++|.+.+..+. ..+++|++|+
T Consensus 129 ~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~ 206 (768)
T 3rgz_A 129 KFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV--SRCVNLEFLD 206 (768)
T ss_dssp CEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC--TTCTTCCEEE
T ss_pred CEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCc--ccCCcCCEEE
Confidence 999999887643332233 56788888888888888877766 67788888888888887765553 6778888888
Q ss_pred CcCCcCccCCCcccccCcccEEECCCCcCcCCCCcccccccccccEEEcCCCcCCCccCccCCCCCCCCEEeCcCccccc
Q 047927 340 MSFNHFSGPIPSLHMFRNLAYLDLSYNIFTGGISSIGWEQLLNLFHVDLSHNNLGGSIPQSLFELPMVQHLLLADNQFDG 419 (1005)
Q Consensus 340 L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 419 (1005)
+++|.+.+.++.+..+++|++|++++|.+++.++.. +..+++|++|++++|.+.+.+|.. .+++|++|++++|++.+
T Consensus 207 Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~ 283 (768)
T 3rgz_A 207 VSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRA-ISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTG 283 (768)
T ss_dssp CCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHH-TTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEE
T ss_pred CcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHH-HhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCC
Confidence 888887776666666667777777777777666555 667777777777777776655543 56666666666666655
Q ss_pred ccccccccccccCCEEeCCCCccCCCCCccccCcCCCcEEECCCCcceeccchhHHHhcCCCCeEeccCCeeeEecCCcc
Q 047927 420 HVTEISNASSSLLDTLDLSDNNLEGPIPLSFFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRLAVVAGSSV 499 (1005)
Q Consensus 420 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~ 499 (1005)
.++......+++|++|++++|.+++.+|..+..+++|++|++++|++.+.++...+.
T Consensus 284 ~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~----------------------- 340 (768)
T 3rgz_A 284 EIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLL----------------------- 340 (768)
T ss_dssp SCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHT-----------------------
T ss_pred ccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHh-----------------------
Confidence 555444444455555555555555555555555555555555555555555544333
Q ss_pred cccCcccceEEcCCccCcCCCCCCCCCceeEEECcCCcCCCCCChhhhhhcCCcccEEeCCCCcccCCCCCCccccCCcc
Q 047927 500 YCFPPLLTTLSLASCKLSAIPNLRKQTKLYHLDLSDNQISGEIPNWLWKIGKDSFNHLNLSHNLLVSLEQPYSISDLTSL 579 (1005)
Q Consensus 500 ~~~~~~L~~L~L~~n~l~~l~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L 579 (1005)
.+++|++|++++|.+++.+|..+.... ++|
T Consensus 341 ------------------------~l~~L~~L~Ls~n~l~~~~p~~l~~l~--------------------------~~L 370 (768)
T 3rgz_A 341 ------------------------KMRGLKVLDLSFNEFSGELPESLTNLS--------------------------ASL 370 (768)
T ss_dssp ------------------------TCTTCCEEECCSSEEEECCCTTHHHHT--------------------------TTC
T ss_pred ------------------------cCCCCCEEeCcCCccCccccHHHHhhh--------------------------cCC
Confidence 344555555666665555665554321 156
Q ss_pred cEEEeccCcccccCCCCCCCcceeeCcCCcCccCCCcchhcccCceEEEEecCCcccccCChhhhccCCCCeEEccCccc
Q 047927 580 SVLDLHSNQIQGKIPPLPPNAAYVDYSGNNFTSSIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYL 659 (1005)
Q Consensus 580 ~~L~l~~n~l~~~~~~~~~~l~~L~ls~n~~~~~~p~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l 659 (1005)
++|++++|.+++.+|.... ...++.|++|++++|.+++.+|..++.+++|+.|++++|++
T Consensus 371 ~~L~Ls~N~l~~~~~~~~~--------------------~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l 430 (768)
T 3rgz_A 371 LTLDLSSNNFSGPILPNLC--------------------QNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYL 430 (768)
T ss_dssp SEEECCSSEEEEECCTTTT--------------------CSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEE
T ss_pred cEEEccCCCcCCCcChhhh--------------------hcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcc
Confidence 6666666666655443210 01145677788888888888888899999999999999999
Q ss_pred cccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCccEEeCCCCeecccCcccccCCCCCCEEECCCCcCCCCcch
Q 047927 660 SGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPC 739 (1005)
Q Consensus 660 ~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~ 739 (1005)
++.+|..+..++ +|++|++++|++++.+|..+..+++|++|++++|++++.+|..+..+++|++|++++|++++.+|.
T Consensus 431 ~~~~p~~l~~l~--~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~ 508 (768)
T 3rgz_A 431 SGTIPSSLGSLS--KLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPK 508 (768)
T ss_dssp ESCCCGGGGGCT--TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCG
T ss_pred cCcccHHHhcCC--CCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCCh
Confidence 999999999988 899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCcEEecCCCcCCcccCCCCCCCCCCCccEEEccCCcccccCChHHHhhhhhhhhccCCchhhhchhhheecc-
Q 047927 740 WVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLN- 818 (1005)
Q Consensus 740 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~- 818 (1005)
+++.+++|++|+|++|+++|.+ |..+..+++|++||+++|+++|.+|..++............ ...+.+..
T Consensus 509 ~~~~l~~L~~L~L~~N~l~~~~--p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~------~~~~~~~~~ 580 (768)
T 3rgz_A 509 WIGRLENLAILKLSNNSFSGNI--PAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIA------GKRYVYIKN 580 (768)
T ss_dssp GGGGCTTCCEEECCSSCCEEEC--CGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTC------SCEEEEEEC
T ss_pred HHhcCCCCCEEECCCCcccCcC--CHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccc------ccccccccc
Confidence 9999999999999999999887 88899999999999999999999998765332211110000 00000000
Q ss_pred --cccccccccEEEEEcchHHHHHHhcccceEEECCCCeeeccCcccccCCCCCCEEECCCCcCcccCchhhhcCCCCCE
Q 047927 819 --LSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIES 896 (1005)
Q Consensus 819 --~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~ 896 (1005)
.............+.+........+..+..++++.|.++|.+|..++.+++|++||||+|+++|.||..++++++|+.
T Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~ 660 (768)
T 3rgz_A 581 DGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFI 660 (768)
T ss_dssp CSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCE
T ss_pred ccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCE
Confidence 000000001112233333333445667778899999999999999999999999999999999999999999999999
Q ss_pred EeCCCCcCcccCcccccCCCCCCeEEccCCcccccCCCCC
Q 047927 897 LDLSMNNLSGTIPAQLASLNFLSVLNLSYNHLVGRIPTST 936 (1005)
Q Consensus 897 LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~ 936 (1005)
|||++|+++|.||++++++++|++||||+|+++|.||...
T Consensus 661 L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l 700 (768)
T 3rgz_A 661 LNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAM 700 (768)
T ss_dssp EECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGG
T ss_pred EeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHH
Confidence 9999999999999999999999999999999999999753
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1e-55 Score=538.61 Aligned_cols=595 Identities=23% Similarity=0.228 Sum_probs=347.6
Q ss_pred EEEccCCCCCCCCCccccCCCCCcEEECCCCCCCCCcchhccCCCCCcEEEccCCCCCccCccccCCCCCCCEEeCCCCC
Q 047927 193 VLSLSGCFLSGPVDPSLSNLRSLSVIRLDMNDLYSPVPEFLADFSNLTSLYLSSCGLHGAFPEKILQLPTLETLDLSYNE 272 (1005)
Q Consensus 193 ~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~ 272 (1005)
.++.+++.++. +|..+. +++++|++++|.+.+..+..|+++++|++|++++|.+++..|..++++++|++|++++|.
T Consensus 8 ~~~cs~~~L~~-ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 84 (680)
T 1ziw_A 8 VADCSHLKLTQ-VPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 84 (680)
T ss_dssp EEECCSSCCSS-CCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSC
T ss_pred eeECCCCCccc-cccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCc
Confidence 45555555543 344333 567777777777666666667777777777777777776666667777777777777776
Q ss_pred CCCCCCCcccCCCCCcEEEcccccccccCchhhccCCCCCEEeecCCccCCCCCccCCCCCCCcEEECcCCcCccCCCcc
Q 047927 273 LLQGSLPDFHQNLSLETLILSATNFSGILPDSIKNLKNLSRVEFYLCNFNGPIPTSMSDLSQLVYLDMSFNHFSGPIPSL 352 (1005)
Q Consensus 273 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~ 352 (1005)
+.......|..+++|++|++++|.+++..|..|+++++|++|++++|.+.+..|..++++++|++|++++|.+++..+..
T Consensus 85 l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 164 (680)
T 1ziw_A 85 LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEE 164 (680)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHH
T ss_pred cCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHH
Confidence 65444444666667777777777776666667777777888888777777777777777778888888777776554432
Q ss_pred c---ccCcccEEECCCCcCcCCCCcccccccccccEEEcCCCcCCCccCccCC---CCCCCCEEeCcCcccccccccccc
Q 047927 353 H---MFRNLAYLDLSYNIFTGGISSIGWEQLLNLFHVDLSHNNLGGSIPQSLF---ELPMVQHLLLADNQFDGHVTEISN 426 (1005)
Q Consensus 353 ~---~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~---~l~~L~~L~l~~n~l~~~~~~~~~ 426 (1005)
. ...+|++|++++|.+++..+.. +..+++|+.+++.++.+.+.....+. ..++
T Consensus 165 ~~~~~~~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~-------------------- 223 (680)
T 1ziw_A 165 LDIFANSSLKKLELSSNQIKEFSPGC-FHAIGRLFGLFLNNVQLGPSLTEKLCLELANTS-------------------- 223 (680)
T ss_dssp HGGGTTCEESEEECTTCCCCCBCTTG-GGGSSEECEEECTTCCCHHHHHHHHHHHHTTSC--------------------
T ss_pred hhccccccccEEECCCCcccccChhh-hhhhhhhhhhhccccccChhhHHHHHHHhhhcc--------------------
Confidence 1 2345666666666665444433 55566666666655554321111100 1234
Q ss_pred cccccCCEEeCCCCccCCCCCccccCcCC--CcEEECCCCcceeccchhHHHhcCCCCeEeccCCeeeEecCCcccccCc
Q 047927 427 ASSSLLDTLDLSDNNLEGPIPLSFFELKN--LKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRLAVVAGSSVYCFPP 504 (1005)
Q Consensus 427 ~~~~~L~~L~L~~n~l~~~~~~~l~~l~~--L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ 504 (1005)
|++|++++|.+.+..|..+..++. |+.|++++|++. .++...+..+++|++|++++|.+..+....+. ..+
T Consensus 224 -----L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~ 296 (680)
T 1ziw_A 224 -----IRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLN-VVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLH-GLF 296 (680)
T ss_dssp -----CCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCC-EECTTTTTTCTTCCEEECCSCCBSEECTTTTT-TCT
T ss_pred -----ccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcC-ccCcccccCcccccEeeCCCCccCccChhhhc-CCC
Confidence 444444444444444444444432 555555555444 22233444455555555555544443322211 111
Q ss_pred ccceEEcCCccCc------CCC-----CCCCCCceeEEECcCCcCCCCCChhhhhhcCCcccEEeCCCCcccCCCCCCcc
Q 047927 505 LLTTLSLASCKLS------AIP-----NLRKQTKLYHLDLSDNQISGEIPNWLWKIGKDSFNHLNLSHNLLVSLEQPYSI 573 (1005)
Q Consensus 505 ~L~~L~L~~n~l~------~l~-----~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~ 573 (1005)
+|+.|++++|... .+| .+..+++|++|++++|.+.+..+.. +
T Consensus 297 ~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~---------------------------~ 349 (680)
T 1ziw_A 297 NVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNM---------------------------F 349 (680)
T ss_dssp TCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTT---------------------------T
T ss_pred CccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhH---------------------------h
Confidence 2222222222111 111 1445555556666655555433322 3
Q ss_pred ccCCcccEEEeccCcccccCCCCCCCcceeeCcCCcCccCCCcchhc--ccCceEEEEecCCcccccCChhhhccCCCCe
Q 047927 574 SDLTSLSVLDLHSNQIQGKIPPLPPNAAYVDYSGNNFTSSIPVDIGS--FMSLSIFFSFSKNSLTGVIPESICNATNLLV 651 (1005)
Q Consensus 574 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ls~n~~~~~~p~~~~~--~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~ 651 (1005)
..+++|++|++++|.+.... ++...+. ..+.++.|++++|++++..|..+..+++|+.
T Consensus 350 ~~l~~L~~L~Ls~n~~~~~~--------------------l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 409 (680)
T 1ziw_A 350 TGLINLKYLSLSNSFTSLRT--------------------LTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEV 409 (680)
T ss_dssp TTCTTCCEEECTTCBSCCCE--------------------ECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred ccccCCcEEECCCCchhhhh--------------------cchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCE
Confidence 33456666666666543211 0000000 0134555556666665555556666666666
Q ss_pred EEccCccccccCC-chhhhcCcccccEEECCCCcCCccccCccCCCCCccEEeCCCCeec--ccCcccccCCCCCCEEEC
Q 047927 652 LDLSYNYLSGMIP-TCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLE--GMVPKSLANCSVLEILDL 728 (1005)
Q Consensus 652 L~Ls~N~l~~~~p-~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~--~~~p~~l~~l~~L~~L~L 728 (1005)
|++++|++++.+| ..+..++ +|++|++++|++.+..+..|..+++|++|++++|.+. +..|..|..+++|+.|++
T Consensus 410 L~L~~N~l~~~~~~~~~~~l~--~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~L 487 (680)
T 1ziw_A 410 LDLGLNEIGQELTGQEWRGLE--NIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDL 487 (680)
T ss_dssp EECCSSCCEEECCSGGGTTCT--TCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEEC
T ss_pred EeCCCCcCccccCcccccCcc--cccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEEC
Confidence 6666666655444 3455554 5555666665555555555555555555555555554 344555555555555555
Q ss_pred CCCcCCCCcchhhhcCCCCcEEecCCCcCCcccCCCCCCCCCCCccEEEccCCcccccCChHHHhhhhhhhhccCCchhh
Q 047927 729 GNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSE 808 (1005)
Q Consensus 729 s~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~~~~~~p~~~~~~l~~~~~~~~~~~~~ 808 (1005)
++|++++..|.+|+.+++|++|++++|++++.. +. .+|..
T Consensus 488 s~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~--~~--------------------~~~~~------------------ 527 (680)
T 1ziw_A 488 SNNNIANINDDMLEGLEKLEILDLQHNNLARLW--KH--------------------ANPGG------------------ 527 (680)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGG--ST--------------------TSTTS------------------
T ss_pred CCCCCCcCChhhhccccccCEEeCCCCCccccc--hh--------------------hccCC------------------
Confidence 555555555555555555555555555544321 00 00100
Q ss_pred hchhhheecccccccccccEEEEEcchHHHHHHhcccceEEECCCCeeeccCcccccCCCCCCEEECCCCcCcccCchhh
Q 047927 809 LKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSLI 888 (1005)
Q Consensus 809 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~ 888 (1005)
....+..++.|+.|+|++|+++...+..|+++++|++|||++|++++..|..+
T Consensus 528 ---------------------------~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~ 580 (680)
T 1ziw_A 528 ---------------------------PIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVF 580 (680)
T ss_dssp ---------------------------CCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred ---------------------------cchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHh
Confidence 00001246778899999999985444579999999999999999997777778
Q ss_pred hcCCCCCEEeCCCCcCcccCccccc-CCCCCCeEEccCCcccccCCC
Q 047927 889 GNLREIESLDLSMNNLSGTIPAQLA-SLNFLSVLNLSYNHLVGRIPT 934 (1005)
Q Consensus 889 ~~l~~L~~LdLs~N~l~~~ip~~l~-~l~~L~~L~ls~N~l~g~ip~ 934 (1005)
.++++|+.|||++|++++.+|..+. .+++|+.+++++|++.|.++.
T Consensus 581 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 581 NNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp TTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred CCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCcc
Confidence 9999999999999999999998887 789999999999999998875
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=4.7e-54 Score=523.98 Aligned_cols=583 Identities=20% Similarity=0.198 Sum_probs=410.4
Q ss_pred CCCCEEeCCCCCCCCCCCCcccCCCCCcEEEcccccccccCchhhccCCCCCEEeecCCccCCCCCccCCCCCCCcEEEC
Q 047927 261 PTLETLDLSYNELLQGSLPDFHQNLSLETLILSATNFSGILPDSIKNLKNLSRVEFYLCNFNGPIPTSMSDLSQLVYLDM 340 (1005)
Q Consensus 261 ~~L~~L~Ls~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L 340 (1005)
+++++|++++|.+.......|..+++|++|++++|.+++..|..++++++|++|++++|.+.+..+..|+.+++|++|++
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 104 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL 104 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence 34444444444433322223444444444444444455555666666666666666666666544445666666666666
Q ss_pred cCCcCccCCCcccccCcccEEECCCCcCcCCCCcccccccccccEEEcCCCcCCCccCccCCCCCCCCEEeCcCcccccc
Q 047927 341 SFNHFSGPIPSLHMFRNLAYLDLSYNIFTGGISSIGWEQLLNLFHVDLSHNNLGGSIPQSLFELPMVQHLLLADNQFDGH 420 (1005)
Q Consensus 341 ~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~ 420 (1005)
++|.+.+..+. .+..+++|++|++++|.+++..+..+..+++|++|++++|.+++.
T Consensus 105 ~~n~l~~~~~~------------------------~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 160 (680)
T 1ziw_A 105 MSNSIQKIKNN------------------------PFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQAL 160 (680)
T ss_dssp CSSCCCCCCSC------------------------TTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCB
T ss_pred CCCccCccChh------------------------HccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCccccc
Confidence 66665533321 144555555555555555555555555566666666666665544
Q ss_pred ccccc-ccccccCCEEeCCCCccCCCCCccccCcCCCcEEECCCCcceeccchhHH--HhcCCCCeEeccCCeeeEecCC
Q 047927 421 VTEIS-NASSSLLDTLDLSDNNLEGPIPLSFFELKNLKILLLSSNKFVGTIELDAI--QRLRNLFRLDLSYNRLAVVAGS 497 (1005)
Q Consensus 421 ~~~~~-~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l--~~l~~L~~L~l~~n~l~~~~~~ 497 (1005)
.+... ....++|++|++++|.+++..|..+..+++|+.|+++++.+.+....... -..++|+.|++++|.+......
T Consensus 161 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~ 240 (680)
T 1ziw_A 161 KSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNT 240 (680)
T ss_dssp CHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTT
T ss_pred CHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChh
Confidence 33322 22346688888888888888888899999999999999887633221111 1347888899998888877655
Q ss_pred cccccC-cccceEEcCCccCcCCCC--CCCCCceeEEECcCCcCCCCCChhhhhhcCCcccEEeCCCCcccCCCCCCccc
Q 047927 498 SVYCFP-PLLTTLSLASCKLSAIPN--LRKQTKLYHLDLSDNQISGEIPNWLWKIGKDSFNHLNLSHNLLVSLEQPYSIS 574 (1005)
Q Consensus 498 ~~~~~~-~~L~~L~L~~n~l~~l~~--l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~ 574 (1005)
.+.... +.|++|++++|+++.++. +..+++|++|++++|.+.+..|.. +.
T Consensus 241 ~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~---------------------------~~ 293 (680)
T 1ziw_A 241 TFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHS---------------------------LH 293 (680)
T ss_dssp TTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTT---------------------------TT
T ss_pred HhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhh---------------------------hc
Confidence 543332 347777777777766543 667777777777777766544443 34
Q ss_pred cCCcccEEEeccCcccccCCCCCCCcceeeCcCCcCccCCCcchhcccCceEEEEecCCcccccCChhhhccCCCCeEEc
Q 047927 575 DLTSLSVLDLHSNQIQGKIPPLPPNAAYVDYSGNNFTSSIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVLDL 654 (1005)
Q Consensus 575 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ls~n~~~~~~p~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L 654 (1005)
.+++|++|++++|...+.++.. .+. .++...+..++.|++|++++|.+++..+..|..+++|++|++
T Consensus 294 ~l~~L~~L~L~~~~~~~~~~~~--~lp-----------~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 360 (680)
T 1ziw_A 294 GLFNVRYLNLKRSFTKQSISLA--SLP-----------KIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSL 360 (680)
T ss_dssp TCTTCCEEECTTCBCCC--------CC-----------EECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCccEEeccchhhhcccccc--ccc-----------ccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEEC
Confidence 4567777777766554332210 000 011112234778889999999999888888999999999999
Q ss_pred cCccccc--cCCchhhhcCcccccEEECCCCcCCccccCccCCCCCccEEeCCCCeecccCc-ccccCCCCCCEEECCCC
Q 047927 655 SYNYLSG--MIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVP-KSLANCSVLEILDLGNN 731 (1005)
Q Consensus 655 s~N~l~~--~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~Ls~N 731 (1005)
++|.++. ..+..+..+...+|+.|++++|++++..|..|..+++|++|++++|++++.+| ..|.++++|++|++++|
T Consensus 361 s~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n 440 (680)
T 1ziw_A 361 SNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYN 440 (680)
T ss_dssp TTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSC
T ss_pred CCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCC
Confidence 9998643 22333444432379999999999999999999999999999999999987665 78999999999999999
Q ss_pred cCCCCcchhhhcCCCCcEEecCCCcCCcccCCCCCCCCCCCccEEEccCCcccccCChHHHhhhhhhhhccCCchhhhch
Q 047927 732 QFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKH 811 (1005)
Q Consensus 732 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~ 811 (1005)
++++..+..|..+++|+.|++++|.+.+.-..|..+..+++|+.|++++|++++..|..+
T Consensus 441 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~-------------------- 500 (680)
T 1ziw_A 441 KYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDML-------------------- 500 (680)
T ss_dssp SEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTT--------------------
T ss_pred CcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhh--------------------
Confidence 999999999999999999999999987433348889999999999999999986554321
Q ss_pred hhheecccccccccccEEEEEcchHHHHHHhcccceEEECCCCeeeccCc--------ccccCCCCCCEEECCCCcCccc
Q 047927 812 LQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIP--------EEMGLLQSLCALNLSHNALTGS 883 (1005)
Q Consensus 812 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip--------~~~~~l~~L~~L~Ls~N~l~g~ 883 (1005)
..++.|+.|+|++|++++..+ ..++++++|++|+|++|+++..
T Consensus 501 -----------------------------~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i 551 (680)
T 1ziw_A 501 -----------------------------EGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEI 551 (680)
T ss_dssp -----------------------------TTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCC
T ss_pred -----------------------------ccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCC
Confidence 146788999999999987522 3489999999999999999954
Q ss_pred CchhhhcCCCCCEEeCCCCcCcccCcccccCCCCCCeEEccCCcccccCCCCC--cccccccccccCCCCCCCCC
Q 047927 884 IPSLIGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLNLSYNHLVGRIPTST--QLQSFLATSFEGNDRLWGPP 956 (1005)
Q Consensus 884 ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~--~~~~~~~~~~~gn~~lc~~~ 956 (1005)
.+..|+++++|+.|||++|++++..|..|.++++|+.|++++|+|++..|... .+..+....+.|||-.|..+
T Consensus 552 ~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~ 626 (680)
T 1ziw_A 552 PVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE 626 (680)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred CHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCc
Confidence 44568999999999999999998888889999999999999999999766432 34556667788999888754
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=7.7e-52 Score=497.60 Aligned_cols=525 Identities=22% Similarity=0.207 Sum_probs=328.5
Q ss_pred CCccEEEccCCCCCCCCCccccCCCCCcEEECCCCCCCCCcchhccCCCCCcEEEccCCCCCccCccccCCCCCCCEEeC
Q 047927 189 PKLQVLSLSGCFLSGPVDPSLSNLRSLSVIRLDMNDLYSPVPEFLADFSNLTSLYLSSCGLHGAFPEKILQLPTLETLDL 268 (1005)
Q Consensus 189 ~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 268 (1005)
+++++|++++|.+++..|..|+++++|++|++++|.+.+..|..|+++++|++|++++|.+++..|..++.+++|++|++
T Consensus 33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 112 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFF 112 (606)
T ss_dssp TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEEC
T ss_pred CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeec
Confidence 56788888888888777778888888888888888887777788888888888888888888777888888888888888
Q ss_pred CCCCCCCCCCCcccCCCCCcEEEcccccccccCchhhccCCCCCEEeecCCccCCCCCccCCCCCCCc--EEECcCCcCc
Q 047927 269 SYNELLQGSLPDFHQNLSLETLILSATNFSGILPDSIKNLKNLSRVEFYLCNFNGPIPTSMSDLSQLV--YLDMSFNHFS 346 (1005)
Q Consensus 269 s~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~--~L~L~~n~l~ 346 (1005)
++|.+.......+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..++.+++|+ .|++++|.+.
T Consensus 113 ~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~ 192 (606)
T 3t6q_A 113 IQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA 192 (606)
T ss_dssp TTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCC
T ss_pred cccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccC
Confidence 88877654445566677777777777777764434444477777777777777766666666777777 6777777777
Q ss_pred cCCCcccccCcccEEECCCCcCcCCCCcccccccccccEEEcCCCcCCCccCccCCCCCCCCEEeCcCcccccccccccc
Q 047927 347 GPIPSLHMFRNLAYLDLSYNIFTGGISSIGWEQLLNLFHVDLSHNNLGGSIPQSLFELPMVQHLLLADNQFDGHVTEISN 426 (1005)
Q Consensus 347 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~ 426 (1005)
+..+......+|++|++++|.. ++.. +..+.++....+....+. .+....+.
T Consensus 193 ~~~~~~~~~~~L~~L~l~~~~~---~~~~-~~~l~~~~l~~l~~~~~~-----------~~~~~~i~------------- 244 (606)
T 3t6q_A 193 GIEPGAFDSAVFQSLNFGGTQN---LLVI-FKGLKNSTIQSLWLGTFE-----------DMDDEDIS------------- 244 (606)
T ss_dssp EECTTTTTTCEEEEEECTTCSC---HHHH-HHHTTTCEEEEEECCCCT-----------TSCCCCCC-------------
T ss_pred ccChhHhhhccccccccCCchh---HHHH-hhhccccchhheechhhc-----------cccccccC-------------
Confidence 6666555555666666666541 1111 233333322222211111 00000010
Q ss_pred cccccCCEEeCCCCccCCCCCccccCcC--CCcEEECCCCcceeccchhHHHhcCCCCeEeccCCeeeEecCCcccccCc
Q 047927 427 ASSSLLDTLDLSDNNLEGPIPLSFFELK--NLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRLAVVAGSSVYCFPP 504 (1005)
Q Consensus 427 ~~~~~L~~L~L~~n~l~~~~~~~l~~l~--~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ 504 (1005)
+..+..+. +|+.|++++|.+. .++...+..+++|++|++++|.
T Consensus 245 --------------------~~~~~~l~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~-------------- 289 (606)
T 3t6q_A 245 --------------------PAVFEGLCEMSVESINLQKHYFF-NISSNTFHCFSGLQELDLTATH-------------- 289 (606)
T ss_dssp --------------------GGGGGGGGGSEEEEEECTTCCCS-SCCTTTTTTCTTCSEEECTTSC--------------
T ss_pred --------------------hhHhchhhcCceeEEEeecCccC-ccCHHHhccccCCCEEeccCCc--------------
Confidence 11111111 3444444444443 2222222222222222222222
Q ss_pred ccceEEcCCccCcCCCC-CCCCCceeEEECcCCcCCCCCChhhhhhcCCcccEEeCCCCcccCCCCCCccccCCcccEEE
Q 047927 505 LLTTLSLASCKLSAIPN-LRKQTKLYHLDLSDNQISGEIPNWLWKIGKDSFNHLNLSHNLLVSLEQPYSISDLTSLSVLD 583 (1005)
Q Consensus 505 ~L~~L~L~~n~l~~l~~-l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ 583 (1005)
++.+|. +..+++|++|++++|.+.+..|.. +..+++|++|+
T Consensus 290 -----------l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~---------------------------~~~l~~L~~L~ 331 (606)
T 3t6q_A 290 -----------LSELPSGLVGLSTLKKLVLSANKFENLCQIS---------------------------ASNFPSLTHLS 331 (606)
T ss_dssp -----------CSCCCSSCCSCTTCCEEECTTCCCSBGGGGC---------------------------GGGCTTCSEEE
T ss_pred -----------cCCCChhhcccccCCEEECccCCcCcCchhh---------------------------hhccCcCCEEE
Confidence 222222 444555666666666555332222 22234555555
Q ss_pred eccCcccccCCCCCCCcceeeCcCCcCccCCCcchhcccCceEEEEecCCcccccCChhhhccCCCCeEEccCccccccC
Q 047927 584 LHSNQIQGKIPPLPPNAAYVDYSGNNFTSSIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMI 663 (1005)
Q Consensus 584 l~~n~l~~~~~~~~~~l~~L~ls~n~~~~~~p~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~ 663 (1005)
+++|.+.+.+| +..+..+++|++|++++|.+++..
T Consensus 332 l~~n~~~~~~~---------------------------------------------~~~~~~l~~L~~L~l~~n~l~~~~ 366 (606)
T 3t6q_A 332 IKGNTKRLELG---------------------------------------------TGCLENLENLRELDLSHDDIETSD 366 (606)
T ss_dssp CCSCSSCCBCC---------------------------------------------SSTTTTCTTCCEEECCSSCCCEEE
T ss_pred CCCCCcccccc---------------------------------------------hhhhhccCcCCEEECCCCcccccc
Confidence 55554433222 122445556666666666665443
Q ss_pred --CchhhhcCcccccEEECCCCcCCccccCccCCCCCccEEeCCCCeecccCcc-cccCCCCCCEEECCCCcCCCCcchh
Q 047927 664 --PTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPK-SLANCSVLEILDLGNNQFDDTFPCW 740 (1005)
Q Consensus 664 --p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~-~l~~l~~L~~L~Ls~N~l~~~~p~~ 740 (1005)
|..+..++ +|++|++++|++.+..|..|..+++|++|++++|++++..|. .+..+++|++|++++|++++..|.+
T Consensus 367 ~~~~~~~~l~--~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 444 (606)
T 3t6q_A 367 CCNLQLRNLS--HLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQL 444 (606)
T ss_dssp ESTTTTTTCT--TCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTT
T ss_pred CcchhcccCC--CCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHH
Confidence 44555555 566666666666555555666666666666666666655443 3556666666666666666555555
Q ss_pred hhcCCCCcEEecCCCcCCcccCCCCCCCCCCCccEEEccCCcccccCChHHHhhhhhhhhccCCchhhhchhhheecccc
Q 047927 741 VKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLS 820 (1005)
Q Consensus 741 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 820 (1005)
++.+++|++|++++|++.+.. +|..
T Consensus 445 ~~~l~~L~~L~L~~n~l~~~~-------------------------~~~~------------------------------ 469 (606)
T 3t6q_A 445 FDGLPALQHLNLQGNHFPKGN-------------------------IQKT------------------------------ 469 (606)
T ss_dssp TTTCTTCCEEECTTCBCGGGE-------------------------ECSS------------------------------
T ss_pred HhCCCCCCEEECCCCCCCccc-------------------------cccc------------------------------
Confidence 555555555555555554311 1100
Q ss_pred cccccccEEEEEcchHHHHHHhcccceEEECCCCeeeccCcccccCCCCCCEEECCCCcCcccCchhhhcCCCCCEEeCC
Q 047927 821 QAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLS 900 (1005)
Q Consensus 821 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs 900 (1005)
..+..++.|+.|++++|++++.+|..|+.+++|++|+|++|++++.+|..+.++++| .|||+
T Consensus 470 -----------------~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~ 531 (606)
T 3t6q_A 470 -----------------NSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLA 531 (606)
T ss_dssp -----------------CGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECC
T ss_pred -----------------hhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECc
Confidence 001146778889999999998999999999999999999999999999999999999 99999
Q ss_pred CCcCcccCcccccCCCCCCeEEccCCcccccCCC
Q 047927 901 MNNLSGTIPAQLASLNFLSVLNLSYNHLVGRIPT 934 (1005)
Q Consensus 901 ~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~ 934 (1005)
+|++++.+|..+..+++|++|++++|+++|.++.
T Consensus 532 ~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 565 (606)
T 3t6q_A 532 SNHISIILPSLLPILSQQRTINLRQNPLDCTCSN 565 (606)
T ss_dssp SSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGG
T ss_pred CCcccccCHhhcccCCCCCEEeCCCCCccccCCc
Confidence 9999999999999999999999999999998774
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1e-49 Score=479.18 Aligned_cols=485 Identities=19% Similarity=0.171 Sum_probs=270.8
Q ss_pred ccccCCCCCcEEECCCCCCCCCcchhccCCCCCcEEEccCCCCCccCccccCCCCCCCEEeCCCCCCCCCCCCcccCCCC
Q 047927 207 PSLSNLRSLSVIRLDMNDLYSPVPEFLADFSNLTSLYLSSCGLHGAFPEKILQLPTLETLDLSYNELLQGSLPDFHQNLS 286 (1005)
Q Consensus 207 ~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~ 286 (1005)
..|+++++|++|++++|.+.+..|..|+++++|++|++++|.+++..+..++.+++|++|++++|.+.....+.+..+++
T Consensus 75 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 154 (606)
T 3t6q_A 75 DTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEK 154 (606)
T ss_dssp TTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTT
T ss_pred hhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcc
Confidence 33444444444444444444444555555666666666666666544555666666666666666665555555656677
Q ss_pred CcEEEcccccccccCchhhccCCCCC--EEeecCCccCCCCCccCCCCCCCcEEECcCCcCccCCCcccccC--cccEEE
Q 047927 287 LETLILSATNFSGILPDSIKNLKNLS--RVEFYLCNFNGPIPTSMSDLSQLVYLDMSFNHFSGPIPSLHMFR--NLAYLD 362 (1005)
Q Consensus 287 L~~L~L~~n~l~~~~p~~l~~l~~L~--~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~--~L~~L~ 362 (1005)
|++|++++|.+++..|..++.+++|+ .|++++|.+.+..|..+.. .+|+.|++++|.... .....+. .++.+.
T Consensus 155 L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~~~~~~--~~~~~l~~~~l~~l~ 231 (606)
T 3t6q_A 155 LKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDS-AVFQSLNFGGTQNLL--VIFKGLKNSTIQSLW 231 (606)
T ss_dssp CCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTT-CEEEEEECTTCSCHH--HHHHHTTTCEEEEEE
T ss_pred cCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhh-ccccccccCCchhHH--HHhhhccccchhhee
Confidence 77777777777777777788888888 7788888887766665543 578888888775211 1111122 333444
Q ss_pred CCCCcCc--CCCCcccccccc--cccEEEcCCCcCCCccCccCCCCCCCCEEeCcCcccccccccccccccccCCEEeCC
Q 047927 363 LSYNIFT--GGISSIGWEQLL--NLFHVDLSHNNLGGSIPQSLFELPMVQHLLLADNQFDGHVTEISNASSSLLDTLDLS 438 (1005)
Q Consensus 363 L~~n~l~--~~~~~~~~~~l~--~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~ 438 (1005)
+....-. ..++...+..+. +|+++++++|.+++..+..+..+++|++|++++|++......+ ..+++|++|+++
T Consensus 232 ~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l--~~l~~L~~L~l~ 309 (606)
T 3t6q_A 232 LGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGL--VGLSTLKKLVLS 309 (606)
T ss_dssp CCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSC--CSCTTCCEEECT
T ss_pred chhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhh--cccccCCEEECc
Confidence 3322100 122222244443 6788888888887666666777777777777777665221111 223455555555
Q ss_pred CCccCCCCCccccCcCCCcEEECCCCcceeccchhHHHhcCCCCeEeccCCeeeEecCCcccccCcccceEEcCCccCcC
Q 047927 439 DNNLEGPIPLSFFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRLAVVAGSSVYCFPPLLTTLSLASCKLSA 518 (1005)
Q Consensus 439 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~ 518 (1005)
+|.+.+..|..+..+++|+.|++++|.+.+.++...+..+++|++|++++|.+......
T Consensus 310 ~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~--------------------- 368 (606)
T 3t6q_A 310 ANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCC--------------------- 368 (606)
T ss_dssp TCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEES---------------------
T ss_pred cCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCc---------------------
Confidence 55555555555556666666666666555455444445555555555555444433200
Q ss_pred CC-CCCCCCceeEEECcCCcCCCCCChhhhhhcCCcccEEeCCCCcccCCCCCCccccCCcccEEEeccCcccccCCCCC
Q 047927 519 IP-NLRKQTKLYHLDLSDNQISGEIPNWLWKIGKDSFNHLNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIPPLP 597 (1005)
Q Consensus 519 l~-~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 597 (1005)
+ .+..+++|++|++++|.+.+..|.. +..+++|++|++++|++.+..+.
T Consensus 369 -~~~~~~l~~L~~L~l~~n~l~~~~~~~---------------------------~~~l~~L~~L~l~~n~l~~~~~~-- 418 (606)
T 3t6q_A 369 -NLQLRNLSHLQSLNLSYNEPLSLKTEA---------------------------FKECPQLELLDLAFTRLKVKDAQ-- 418 (606)
T ss_dssp -TTTTTTCTTCCEEECCSCSCEEECTTT---------------------------TTTCTTCSEEECTTCCEECCTTC--
T ss_pred -chhcccCCCCCEEECCCCcCCcCCHHH---------------------------hcCCccCCeEECCCCcCCCcccc--
Confidence 1 1444555555555555554333322 22334555555555555432221
Q ss_pred CCcceeeCcCCcCccCCCcchhcccCceEEEEecCCcccccCChhhhccCCCCeEEccCccccccCCchhhhcCcccccE
Q 047927 598 PNAAYVDYSGNNFTSSIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGV 677 (1005)
Q Consensus 598 ~~l~~L~ls~n~~~~~~p~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~ 677 (1005)
..+..+++|+.|++++|.+++..|..+..++ +|++
T Consensus 419 -------------------------------------------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~--~L~~ 453 (606)
T 3t6q_A 419 -------------------------------------------SPFQNLHLLKVLNLSHSLLDISSEQLFDGLP--ALQH 453 (606)
T ss_dssp -------------------------------------------CTTTTCTTCCEEECTTCCCBTTCTTTTTTCT--TCCE
T ss_pred -------------------------------------------hhhhCcccCCEEECCCCccCCcCHHHHhCCC--CCCE
Confidence 1244445555555555555544454455444 5555
Q ss_pred EECCCCcCCcc---ccCccCCCCCccEEeCCCCeecccCcccccCCCCCCEEECCCCcCCCCcchhhhcCCCCcEEecCC
Q 047927 678 LNLRRNNLNGT---VSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRS 754 (1005)
Q Consensus 678 L~L~~n~l~~~---~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~ 754 (1005)
|++++|++++. .+..+..+++|++|++++|++++..|..|..+++|+.|++++|++++..|.++.++++| +|++++
T Consensus 454 L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~ 532 (606)
T 3t6q_A 454 LNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLAS 532 (606)
T ss_dssp EECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCS
T ss_pred EECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcC
Confidence 55555555442 12345555566666666666665555666666666666666666666666666666666 666666
Q ss_pred CcCCcccCCCCCCCCCCCccEEEccCCcccccCChHHHhhh
Q 047927 755 NNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNL 795 (1005)
Q Consensus 755 N~l~~~~~~~~~~~~l~~L~~L~ls~N~~~~~~p~~~~~~l 795 (1005)
|++++.. |..+..+++|+.+++++|++.+.++..++..|
T Consensus 533 N~l~~~~--~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~w 571 (606)
T 3t6q_A 533 NHISIIL--PSLLPILSQQRTINLRQNPLDCTCSNIYFLEW 571 (606)
T ss_dssp SCCCCCC--GGGHHHHHTSSEEECTTCCEECSGGGHHHHHH
T ss_pred CcccccC--HhhcccCCCCCEEeCCCCCccccCCcHHHHHH
Confidence 6665543 44455566667777777777777776665544
No 7
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=5e-50 Score=481.80 Aligned_cols=542 Identities=22% Similarity=0.190 Sum_probs=307.6
Q ss_pred cEEECCCCCCCCCcchhccCCCCCcEEEccCCCCCccCccccCCCCCCCEEeCCCCCCCCCCCCcccCCCCCcEEEcccc
Q 047927 216 SVIRLDMNDLYSPVPEFLADFSNLTSLYLSSCGLHGAFPEKILQLPTLETLDLSYNELLQGSLPDFHQNLSLETLILSAT 295 (1005)
Q Consensus 216 ~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~L~~L~L~~n 295 (1005)
.+++.+++.+. .+|..+. +++++|++++|.+++..+..+.++++|++|++++|.+
T Consensus 14 ~~~~c~~~~l~-~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l---------------------- 68 (606)
T 3vq2_A 14 ITYQCMDQKLS-KVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEI---------------------- 68 (606)
T ss_dssp TEEECTTSCCS-SCCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCC----------------------
T ss_pred CceEccCCCcc-cCCCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcc----------------------
Confidence 34555555553 2343332 5566666666666655555555555555555555544
Q ss_pred cccccCchhhccCCCCCEEeecCCccCCCCCccCCCCCCCcEEECcCCcCccCCC-cccccCcccEEECCCCcCcC-CCC
Q 047927 296 NFSGILPDSIKNLKNLSRVEFYLCNFNGPIPTSMSDLSQLVYLDMSFNHFSGPIP-SLHMFRNLAYLDLSYNIFTG-GIS 373 (1005)
Q Consensus 296 ~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~~~~~L~~L~L~~n~l~~-~~~ 373 (1005)
++..|..|+++++|++|++++|.+.+..|..|+++++|++|++++|.+.+..+ .+..+.+|++|++++|.+++ .+|
T Consensus 69 --~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp 146 (606)
T 3vq2_A 69 --ETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLP 146 (606)
T ss_dssp --CEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCC
T ss_pred --cccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceech
Confidence 44444555555555555555555555555555555555555555555543331 22233344444444444432 233
Q ss_pred cccccccccccEEEcCCCcCCCccCccCCCCCCCCEEeCcCcccccccccccccccccCCEEeCCCCccCCCCCccccCc
Q 047927 374 SIGWEQLLNLFHVDLSHNNLGGSIPQSLFELPMVQHLLLADNQFDGHVTEISNASSSLLDTLDLSDNNLEGPIPLSFFEL 453 (1005)
Q Consensus 374 ~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l 453 (1005)
.. ++.+++|++|++++|.+++..+..+..+++|+. .+.++++++|.+++..+..+...
T Consensus 147 ~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~---------------------~l~~L~l~~n~l~~~~~~~~~~~ 204 (606)
T 3vq2_A 147 AY-FSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQ---------------------VNLSLDMSLNPIDFIQDQAFQGI 204 (606)
T ss_dssp GG-GGTCTTCCEEECCSSCCCEECTTTTHHHHHCTT---------------------CCCEEECTTCCCCEECTTTTTTC
T ss_pred Hh-HhhcCCCCEEEccCCcceecChhhhhhhhcccc---------------------ccceeeccCCCcceeCcccccCc
Confidence 33 555566666666666555444444433332220 13456666666665544444443
Q ss_pred CCCcEEECCCCcceeccchhHHHhcCCCCeEeccCCeeeEecCCcccccCcccceEEcCCccCcCCCCCCCCCceeEEEC
Q 047927 454 KNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRLAVVAGSSVYCFPPLLTTLSLASCKLSAIPNLRKQTKLYHLDL 533 (1005)
Q Consensus 454 ~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~l~~l~~l~~L~~L~L 533 (1005)
+|+.|++++|.+.+......+..+++|+.+++..+.+..... +..+ .-..++.+..+ .++.+++
T Consensus 205 -~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~---------l~~~-----~~~~~~~l~~l-~l~~l~l 268 (606)
T 3vq2_A 205 -KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERN---------LEIF-----EPSIMEGLCDV-TIDEFRL 268 (606)
T ss_dssp -EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCC---------CSCC-----CGGGGTTGGGS-EEEEEEE
T ss_pred -eeeeeeccCCccchhHHHHHhccccccccccccccccccCCc---------cccc-----ChHHhhhhhhc-cHhheec
Confidence 788888888888766666778888888887776443321110 0000 00011112222 5666666
Q ss_pred -cCCcCCCCCChhhhhhcCCcccEEeCCCCcccCCCCCCccccCCcccEEEeccCcccccCCCCCCCcceeeCcCCcCcc
Q 047927 534 -SDNQISGEIPNWLWKIGKDSFNHLNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIPPLPPNAAYVDYSGNNFTS 612 (1005)
Q Consensus 534 -s~n~l~~~~p~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ls~n~~~~ 612 (1005)
..|.+.+.+|. +.. ...++.|++++|.+..++ .+..+++|++|++++|.+ +.+
T Consensus 269 ~~~~~~~~~~~~-~~~--l~~L~~L~l~~~~~~~l~---~l~~~~~L~~L~l~~n~l-~~l------------------- 322 (606)
T 3vq2_A 269 TYTNDFSDDIVK-FHC--LANVSAMSLAGVSIKYLE---DVPKHFKWQSLSIIRCQL-KQF------------------- 322 (606)
T ss_dssp CCCTTCCGGGGS-CGG--GTTCSEEEEESCCCCCCC---CCCTTCCCSEEEEESCCC-SSC-------------------
T ss_pred cccccccccccc-ccc--CCCCCEEEecCccchhhh---hccccccCCEEEcccccC-ccc-------------------
Confidence 55666655554 222 234555555555554443 334444555555555444 222
Q ss_pred CCCcchhcccCceEEEEecCCcccccCChhhhccCCCCeEEccCcccccc--CCchhhhcCcccccEEECCCCcCCcccc
Q 047927 613 SIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGM--IPTCLINMSDSQLGVLNLRRNNLNGTVS 690 (1005)
Q Consensus 613 ~~p~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~--~p~~~~~l~~~~L~~L~L~~n~l~~~~~ 690 (1005)
| .+ .++.|++|++++|...+.+ .+..+++|+.|++++|++++. +|..+..++ +|++|++++|.+++ +|
T Consensus 323 --p-~~--~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~--~L~~L~L~~n~l~~-~~ 392 (606)
T 3vq2_A 323 --P-TL--DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTN--SLRHLDLSFNGAII-MS 392 (606)
T ss_dssp --C-CC--CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCS--CCCEEECCSCSEEE-EC
T ss_pred --c-cC--CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCC--cccEeECCCCcccc-ch
Confidence 2 11 2445555555555443332 344555555555555555543 244454444 55555555555543 22
Q ss_pred CccCCCCCccEEeCCCCeecccCc-ccccCCCCCCEEECCCCcCCCCcchhhhcCCCCcEEecCCCcCCcccCCCCCCCC
Q 047927 691 ATFPANCSLRTLDLNGNQLEGMVP-KSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVS 769 (1005)
Q Consensus 691 ~~~~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~ 769 (1005)
..|..+++|++|++++|++.+..| ..+..+++|++|++++|++++..|..+ ..
T Consensus 393 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--------------------------~~ 446 (606)
T 3vq2_A 393 ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIF--------------------------LG 446 (606)
T ss_dssp CCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTT--------------------------TT
T ss_pred hhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhh--------------------------cC
Confidence 444555555555555555554444 344555555555555555554444444 44
Q ss_pred CCCccEEEccCCccccc-CChHHHhhhhhhhhccCCchhhhchhhheecccccccccccEEEEEcchHHHHHHhcccceE
Q 047927 770 WPMLQIIDLASNKFSGR-LPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTS 848 (1005)
Q Consensus 770 l~~L~~L~ls~N~~~~~-~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 848 (1005)
+++|+.|++++|++++. +|..+ ..+++|+.
T Consensus 447 l~~L~~L~l~~n~l~~~~~~~~~-------------------------------------------------~~l~~L~~ 477 (606)
T 3vq2_A 447 LTSLNTLKMAGNSFKDNTLSNVF-------------------------------------------------ANTTNLTF 477 (606)
T ss_dssp CTTCCEEECTTCEEGGGEECSCC-------------------------------------------------TTCTTCCE
T ss_pred CCCCCEEECCCCcCCCcchHHhh-------------------------------------------------ccCCCCCE
Confidence 55555555555555442 23111 13566778
Q ss_pred EECCCCeeeccCcccccCCCCCCEEECCCCcCcccCchhhhcCCCCCEEeCCCCcCcccCcccccCCC-CCCeEEccCCc
Q 047927 849 IDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLASLN-FLSVLNLSYNH 927 (1005)
Q Consensus 849 L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~-~L~~L~ls~N~ 927 (1005)
|+|++|++++.+|..++++++|++|+|++|++++.+|..++++++|+.|||++|+++ .+|..+..++ +|++|++++|+
T Consensus 478 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~ 556 (606)
T 3vq2_A 478 LDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNS 556 (606)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCC
T ss_pred EECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCC
Confidence 888888888888899999999999999999999999999999999999999999999 6787799997 59999999999
Q ss_pred ccccCCC
Q 047927 928 LVGRIPT 934 (1005)
Q Consensus 928 l~g~ip~ 934 (1005)
+.|.+|.
T Consensus 557 ~~c~c~~ 563 (606)
T 3vq2_A 557 VACICEH 563 (606)
T ss_dssp CCCSSTT
T ss_pred cccCCcc
Confidence 9998875
No 8
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.2e-49 Score=493.75 Aligned_cols=567 Identities=21% Similarity=0.227 Sum_probs=386.3
Q ss_pred EEECCCCCCCCCcchhccCCCCCcEEEccCCCCCccCccccCCCCCCCEEeCCCCCCC-CCCCCcccCCCCCcEEEcccc
Q 047927 217 VIRLDMNDLYSPVPEFLADFSNLTSLYLSSCGLHGAFPEKILQLPTLETLDLSYNELL-QGSLPDFHQNLSLETLILSAT 295 (1005)
Q Consensus 217 ~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~-~~~~~~~~~~~~L~~L~L~~n 295 (1005)
..+.+++.+.. +|. -.+++++|+|++|.+++..|..+.++++|++|++++|... ......|..+++|++|+|++|
T Consensus 8 ~~dcs~~~L~~-vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N 83 (844)
T 3j0a_A 8 IAFYRFCNLTQ-VPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS 83 (844)
T ss_dssp EEEESCCCSSC-CCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC
T ss_pred EEEccCCCCCC-CCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC
Confidence 45666666644 454 3478999999999998888888899999999999888432 222345667777777777777
Q ss_pred cccccCchhhccCCCCCEEeecCCccCCCCCcc--CCCCCCCcEEECcCCcCccCCC--cccccCcccEEECCCCcCcCC
Q 047927 296 NFSGILPDSIKNLKNLSRVEFYLCNFNGPIPTS--MSDLSQLVYLDMSFNHFSGPIP--SLHMFRNLAYLDLSYNIFTGG 371 (1005)
Q Consensus 296 ~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~--l~~l~~L~~L~L~~n~l~~~~~--~~~~~~~L~~L~L~~n~l~~~ 371 (1005)
.+++..|..|+++++|++|++++|.+.+..|.. ++++++|++|++++|.+.+..+ .+..+++|++|++++|.+++.
T Consensus 84 ~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~ 163 (844)
T 3j0a_A 84 KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLV 163 (844)
T ss_dssp CCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCC
T ss_pred cCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCee
Confidence 777777777777777777777777777655543 7777777777777777765432 234455666666666666544
Q ss_pred CCccccccc--ccccEEEcCCCcCCCccCccCCCCCCCCEEeCcCcccccccccccccccccCCEEeCCCCccCCCCCcc
Q 047927 372 ISSIGWEQL--LNLFHVDLSHNNLGGSIPQSLFELPMVQHLLLADNQFDGHVTEISNASSSLLDTLDLSDNNLEGPIPLS 449 (1005)
Q Consensus 372 ~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 449 (1005)
.+.. +..+ ++|+.|+++.|.+.+..+..+..++..- ....|++|++++|.+++..+..
T Consensus 164 ~~~~-l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~-------------------~~~~L~~L~Ls~n~l~~~~~~~ 223 (844)
T 3j0a_A 164 CEHE-LEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPF-------------------RNMVLEILDVSGNGWTVDITGN 223 (844)
T ss_dssp CSGG-GHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTT-------------------TTCCBSEEBCSSCCSSTTTTSG
T ss_pred CHHH-cccccCCccceEECCCCccccccccchhhcCCcc-------------------ccCceeEEecCCCcCchhHHHH
Confidence 4433 4444 5566666666655554444433332200 0012444444444444444333
Q ss_pred ccCc---CCCcEEECCCCcceeccchhHHHhcCCCCeEeccCCeeeEecCCcccccCcccceEEcCCccCcCCC--CCCC
Q 047927 450 FFEL---KNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRLAVVAGSSVYCFPPLLTTLSLASCKLSAIP--NLRK 524 (1005)
Q Consensus 450 l~~l---~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~l~--~l~~ 524 (1005)
+... +.++.+.++.+..... ...+.+.... .+..
T Consensus 224 ~~~~l~~~~l~~L~l~~~~~~~~-----------------------------------------~~~~~l~~~~~~~f~~ 262 (844)
T 3j0a_A 224 FSNAISKSQAFSLILAHHIMGAG-----------------------------------------FGFHNIKDPDQNTFAG 262 (844)
T ss_dssp GGGTSCSCCBSEEECCSSCCBCS-----------------------------------------SSCSSSTTGGGTTTTT
T ss_pred HHhhcCcccccceeccccccccc-----------------------------------------ccccccCCCChhhhhc
Confidence 3221 2333333332211100 0000000000 0111
Q ss_pred --CCceeEEECcCCcCCCCCChhhhhhcCCcccEEeCCCCcccCCCCCCccccCCcccEEEeccCcccccCCCCCCCcce
Q 047927 525 --QTKLYHLDLSDNQISGEIPNWLWKIGKDSFNHLNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIPPLPPNAAY 602 (1005)
Q Consensus 525 --l~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 602 (1005)
.++|+.|++++|.+.+.. +..+..+++|+.|++++|.+.+..|.
T Consensus 263 l~~~~L~~L~Ls~n~l~~~~---------------------------~~~~~~l~~L~~L~L~~n~i~~~~~~------- 308 (844)
T 3j0a_A 263 LARSSVRHLDLSHGFVFSLN---------------------------SRVFETLKDLKVLNLAYNKINKIADE------- 308 (844)
T ss_dssp TTTSCCCEEECTTCCCCEEC---------------------------SCCSSSCCCCCEEEEESCCCCEECTT-------
T ss_pred cccCCccEEECCCCcccccC---------------------------hhhhhcCCCCCEEECCCCcCCCCChH-------
Confidence 134444455444444222 22345567788888888877754442
Q ss_pred eeCcCCcCccCCCcchhcccCceEEEEecCCcccccCChhhhccCCCCeEEccCccccccCCchhhhcCcccccEEECCC
Q 047927 603 VDYSGNNFTSSIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRR 682 (1005)
Q Consensus 603 L~ls~n~~~~~~p~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~ 682 (1005)
.+..++.|++|++++|.+++..|..+..+++|+.|++++|++.+..+..+..++ +|+.|++++
T Consensus 309 ---------------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~--~L~~L~Ls~ 371 (844)
T 3j0a_A 309 ---------------AFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLE--KLQTLDLRD 371 (844)
T ss_dssp ---------------TTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCC--CCCEEEEET
T ss_pred ---------------HhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCC--CCCEEECCC
Confidence 122467888899999998888888999999999999999999887777888887 899999999
Q ss_pred CcCCccccCccCCCCCccEEeCCCCeecccCcccccCCCCCCEEECCCCcCCCCc-chhhhcCCCCcEEecCCCcCCccc
Q 047927 683 NNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTF-PCWVKNASRLHVLILRSNNFFGNI 761 (1005)
Q Consensus 683 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~L~~N~l~~~~ 761 (1005)
|.+++. ..+++|+.|++++|+++ .+|.. ..+++.|++++|++++.. +..+.++++|++|+|++|++++..
T Consensus 372 N~l~~i-----~~~~~L~~L~l~~N~l~-~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~ 442 (844)
T 3j0a_A 372 NALTTI-----HFIPSIPDIFLSGNKLV-TLPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCS 442 (844)
T ss_dssp CCSCCC-----SSCCSCSEEEEESCCCC-CCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCC
T ss_pred CCCCcc-----cCCCCcchhccCCCCcc-ccccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccc
Confidence 999854 33778999999999998 44543 568999999999998753 345678999999999999998643
Q ss_pred CCCCCCCCCCCccEEEccCCcccccCChHHHhhhhhhhhccCCchhhhchhhheecccccccccccEEEEEcchHHHHHH
Q 047927 762 SCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAK 841 (1005)
Q Consensus 762 ~~~~~~~~l~~L~~L~ls~N~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 841 (1005)
. ......+++|+.|++++|.+++..+.... ...+.
T Consensus 443 ~-~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~--------------------------------------------~~~~~ 477 (844)
T 3j0a_A 443 G-DQTPSENPSLEQLFLGENMLQLAWETELC--------------------------------------------WDVFE 477 (844)
T ss_dssp S-SSSSCSCTTCCBCEEESCCCSSSCCSCCC--------------------------------------------SSCSS
T ss_pred c-ccccccCCccccccCCCCccccccccccc--------------------------------------------hhhhc
Confidence 1 22455689999999999999754331100 00012
Q ss_pred hcccceEEECCCCeeeccCcccccCCCCCCEEECCCCcCcccCchhhhcCCCCCEEeCCCCcCcccCcccccCCCCCCeE
Q 047927 842 ILNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLASLNFLSVL 921 (1005)
Q Consensus 842 ~~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L 921 (1005)
.+++|+.|||++|++++.+|..|+++++|+.|+|++|+|++..|..+. ++|+.|||++|++++.+|..+. +|++|
T Consensus 478 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~---~L~~l 552 (844)
T 3j0a_A 478 GLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVFV---SLSVL 552 (844)
T ss_dssp CBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCCS---SCCEE
T ss_pred CcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHhC---CcCEE
Confidence 467899999999999999999999999999999999999987777665 8999999999999999998765 68999
Q ss_pred EccCCcccccCCCCCcccccccccccCCCCCCCCCCCC-CCC
Q 047927 922 NLSYNHLVGRIPTSTQLQSFLATSFEGNDRLWGPPLNV-CPT 962 (1005)
Q Consensus 922 ~ls~N~l~g~ip~~~~~~~~~~~~~~gn~~lc~~~~~~-c~~ 962 (1005)
++++|++.|.++. .+|..+...++..+||.|... |..
T Consensus 553 ~l~~Np~~C~c~~----~~f~~~~~~~~~~~~~~~~~~~C~~ 590 (844)
T 3j0a_A 553 DITHNKFICECEL----STFINWLNHTNVTIAGPPADIYCVY 590 (844)
T ss_dssp EEEEECCCCSSSC----CSHHHHHHHTTTTTCCCGGGCCCSS
T ss_pred EecCCCccccccc----HHHHHHHHhcCcccccccccCccCC
Confidence 9999999998873 455556667788888887654 854
No 9
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=3e-49 Score=475.09 Aligned_cols=528 Identities=20% Similarity=0.185 Sum_probs=363.4
Q ss_pred CCccEEEccCCCCCCCCCccccCCCCCcEEECCCCCCCCCcchhccCCCCCcEEEccCCCCCccCccccCCCCCCCEEeC
Q 047927 189 PKLQVLSLSGCFLSGPVDPSLSNLRSLSVIRLDMNDLYSPVPEFLADFSNLTSLYLSSCGLHGAFPEKILQLPTLETLDL 268 (1005)
Q Consensus 189 ~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 268 (1005)
+++++|++++|.+++..+..|+++++|++|++++|.+.+..|..|+++++|++|++++|.+++..|..++++++|++|++
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 111 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA 111 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEc
Confidence 67888888888888887888899999999999999888877888888999999999999998877888999999999999
Q ss_pred CCCCCCCCCCCcccCCCCCcEEEcccccccc-cCchhhccCCCCCEEeecCCccCCCCCccCCCCCCCc----EEECcCC
Q 047927 269 SYNELLQGSLPDFHQNLSLETLILSATNFSG-ILPDSIKNLKNLSRVEFYLCNFNGPIPTSMSDLSQLV----YLDMSFN 343 (1005)
Q Consensus 269 s~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~----~L~L~~n 343 (1005)
++|.+.......+..+++|++|++++|.+++ .+|..++++++|++|++++|.+.+..+..++.+++|+ +|++++|
T Consensus 112 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n 191 (606)
T 3vq2_A 112 VETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLN 191 (606)
T ss_dssp TTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTC
T ss_pred cCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCC
Confidence 9988766655567778888888888888875 4688888888888888888888877777676655544 7888888
Q ss_pred cCccCCCcccccCcccEEECCCCcCcCCCCcccccccccccEEEcCCCcCCCccCccCCCCCCCCEEeCcCccccccccc
Q 047927 344 HFSGPIPSLHMFRNLAYLDLSYNIFTGGISSIGWEQLLNLFHVDLSHNNLGGSIPQSLFELPMVQHLLLADNQFDGHVTE 423 (1005)
Q Consensus 344 ~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~ 423 (1005)
.+.+..+......+|++|++++|.+++......+..+++|+.+++..+.+.+... +..+ ....
T Consensus 192 ~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~--------l~~~--~~~~------- 254 (606)
T 3vq2_A 192 PIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERN--------LEIF--EPSI------- 254 (606)
T ss_dssp CCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCC--------CSCC--CGGG-------
T ss_pred CcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCc--------cccc--ChHH-------
Confidence 8876666555555777777777776643333336667777776665444331100 0000 0000
Q ss_pred ccccccccCCEEeC-CCCccCCCCCccccCcCCCcEEECCCCcceeccchhHHHhcCCCCeEeccCCeeeEecCCccccc
Q 047927 424 ISNASSSLLDTLDL-SDNNLEGPIPLSFFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRLAVVAGSSVYCF 502 (1005)
Q Consensus 424 ~~~~~~~~L~~L~L-~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~ 502 (1005)
........++.+++ ..+.+.+.+|. +..+++|+.|++++|.+. .++ .+..+++
T Consensus 255 ~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~-~l~--~l~~~~~---------------------- 308 (606)
T 3vq2_A 255 MEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIK-YLE--DVPKHFK---------------------- 308 (606)
T ss_dssp GTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCC-CCC--CCCTTCC----------------------
T ss_pred hhhhhhccHhheeccccccccccccc-cccCCCCCEEEecCccch-hhh--hcccccc----------------------
Confidence 00000012333444 33344444333 444455555555555443 222 2333344
Q ss_pred CcccceEEcCCccCcCCCCCCCCCceeEEECcCCcCCCCCChhhhhhcCCcccEEeCCCCcccCCC-CCCccccCCcccE
Q 047927 503 PPLLTTLSLASCKLSAIPNLRKQTKLYHLDLSDNQISGEIPNWLWKIGKDSFNHLNLSHNLLVSLE-QPYSISDLTSLSV 581 (1005)
Q Consensus 503 ~~~L~~L~L~~n~l~~l~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~L~~n~l~~~~-~~~~~~~l~~L~~ 581 (1005)
|++|++++|.++.+|.+ .+++|++|++++|...+.++ + ...++|++|++++|.+.... .+..+..+++|++
T Consensus 309 ---L~~L~l~~n~l~~lp~~-~l~~L~~L~l~~n~~~~~~~--~--~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~ 380 (606)
T 3vq2_A 309 ---WQSLSIIRCQLKQFPTL-DLPFLKSLTLTMNKGSISFK--K--VALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRH 380 (606)
T ss_dssp ---CSEEEEESCCCSSCCCC-CCSSCCEEEEESCSSCEECC--C--CCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCE
T ss_pred ---CCEEEcccccCcccccC-CCCccceeeccCCcCccchh--h--ccCCCCCEEECcCCccCCCcchhhhhccCCcccE
Confidence 44444444444444444 44455555555553322211 0 12233444444444443321 1122344556666
Q ss_pred EEeccCcccccCCCCCCCcceeeCcCCcCccCCCcchhcccCceEEEEecCCcccccCC-hhhhccCCCCeEEccCcccc
Q 047927 582 LDLHSNQIQGKIPPLPPNAAYVDYSGNNFTSSIPVDIGSFMSLSIFFSFSKNSLTGVIP-ESICNATNLLVLDLSYNYLS 660 (1005)
Q Consensus 582 L~l~~n~l~~~~~~~~~~l~~L~ls~n~~~~~~p~~~~~~~~~L~~L~l~~n~l~~~~p-~~l~~l~~L~~L~Ls~N~l~ 660 (1005)
|++++|.+.+. |..+. .++.|++|++++|.+.+..| ..+..+++|+.|++++|+++
T Consensus 381 L~L~~n~l~~~----------------------~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~ 437 (606)
T 3vq2_A 381 LDLSFNGAIIM----------------------SANFM-GLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTK 437 (606)
T ss_dssp EECCSCSEEEE----------------------CCCCT-TCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCE
T ss_pred eECCCCccccc----------------------hhhcc-CCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCC
Confidence 66666665431 11111 35667777777777777766 67888999999999999999
Q ss_pred ccCCchhhhcCcccccEEECCCCcCCc-cccCccCCCCCccEEeCCCCeecccCcccccCCCCCCEEECCCCcCCCCcch
Q 047927 661 GMIPTCLINMSDSQLGVLNLRRNNLNG-TVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPC 739 (1005)
Q Consensus 661 ~~~p~~~~~l~~~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~ 739 (1005)
+..|..+..++ +|++|++++|++++ ..|..|..+++|++|++++|++++..|..|..+++|++|++++|++++..|.
T Consensus 438 ~~~~~~~~~l~--~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 515 (606)
T 3vq2_A 438 IDFDGIFLGLT--SLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSS 515 (606)
T ss_dssp ECCTTTTTTCT--TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGG
T ss_pred ccchhhhcCCC--CCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHH
Confidence 88888888888 89999999999988 4788899999999999999999998899999999999999999999999999
Q ss_pred hhhcCCCCcEEecCCCcCCcccCCCCCCCCCC-CccEEEccCCcccccCChHHHhhh
Q 047927 740 WVKNASRLHVLILRSNNFFGNISCPRYNVSWP-MLQIIDLASNKFSGRLPQKWLLNL 795 (1005)
Q Consensus 740 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~-~L~~L~ls~N~~~~~~p~~~~~~l 795 (1005)
+|+++++|++|++++|+++. + |..+..++ +|+.+++++|++.+.++..|+..|
T Consensus 516 ~~~~l~~L~~L~l~~N~l~~-~--p~~~~~l~~~L~~l~l~~N~~~c~c~~~~~~~~ 569 (606)
T 3vq2_A 516 HYNQLYSLSTLDCSFNRIET-S--KGILQHFPKSLAFFNLTNNSVACICEHQKFLQW 569 (606)
T ss_dssp GTTTCTTCCEEECTTSCCCC-E--ESCGGGSCTTCCEEECCSCCCCCSSTTHHHHTT
T ss_pred HccCCCcCCEEECCCCcCcc-c--CHhHhhhcccCcEEEccCCCcccCCccHHHHHH
Confidence 99999999999999999984 3 66678887 599999999999999998776554
No 10
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=4.8e-50 Score=480.28 Aligned_cols=518 Identities=18% Similarity=0.223 Sum_probs=319.9
Q ss_pred CCCcHHHHHHHHHHhhhCCCCCCCc------ccccCCCCCCCCccc---ceeEECCCCCEEEEEcCCCCcccccCCCccc
Q 047927 6 GQCQSDQQSLLLQMKSRLTFDSSVS------FRMVQWSQSNDCCTW---SGVDCDEAGRVIGLDLSEESISAGIDNSSSL 76 (1005)
Q Consensus 6 ~~~~~~~~~~ll~~k~~~~~~~~~~------~~~~~w~~~~~~c~w---~gv~c~~~~~v~~L~L~~~~l~~~~~~~~~l 76 (1005)
++....|++||.+||.++.. +.+. ....+|+.+.+||.| .||+|+..+||+.|+|+++++.|.+ ++++
T Consensus 25 ~~~~~~d~~aL~~~~~~~~~-~~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~~~~V~~L~L~~~~l~g~l--p~~l 101 (636)
T 4eco_A 25 TAEYIKDYLALKEIWDALNG-KNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRV--PDAI 101 (636)
T ss_dssp CCHHHHHHHHHHHHHHHTTG-GGCCCCC------CCCCCSSCGGGTTCCTTEEECTTCCEEEEECTTSCCEEEE--CGGG
T ss_pred hhhHHHHHHHHHHHHHHcCC-CCcccCCcCCccCCCCCCCCCcccccCCCCeEEcCCCCEEEEEecCcccCCcC--ChHH
Confidence 34455799999999999864 3221 123479988999999 9999988799999999999999988 8899
Q ss_pred ccccccceeecCCccCCCC-----------CCCCcccCCCCCcEEEcccCCCcCCCcccccC-CCCCcEEeCCCcccccC
Q 047927 77 FSLKYLQSLNLAFNMFNAT-----------EIPSGLGNLTNLTTLNLSNAGFAGQIPIQVSG-MTRLVTLDLSGMYFVRA 144 (1005)
Q Consensus 77 ~~l~~L~~L~Ls~~~~~~~-----------~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~l~~-l~~L~~L~ls~n~~~~~ 144 (1005)
+++++||+|+|++|.+... .+|... +.+|+ ++++++.+.+..|..++. +.++..+++....+...
T Consensus 102 ~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 178 (636)
T 4eco_A 102 GQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKS 178 (636)
T ss_dssp GGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCC
T ss_pred hcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhhHHHHHHHHhhcCccccccccc
Confidence 9999999999999975211 234333 55666 777777776666655542 22222222221110000
Q ss_pred ccccCCCChhhhhhcCccCceeecCCccCCCchhhHHHHHhccCCCccEEEcc--CCCCCCCCCccccCCCCCcEEECCC
Q 047927 145 PLKLENPNLSGLLQNLAELRELYLDGVNISAPGIEWCQALSSLVPKLQVLSLS--GCFLSGPVDPSLSNLRSLSVIRLDM 222 (1005)
Q Consensus 145 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~L~~L~L~--~n~~~~~~~~~l~~l~~L~~L~l~~ 222 (1005)
.. ..++.+.+. .|.+++ +|..++++++|++|++++
T Consensus 179 --------------~~----------------------------~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~ 215 (636)
T 4eco_A 179 --------------SR----------------------------ITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGN 215 (636)
T ss_dssp --------------CC----------------------------CCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEES
T ss_pred --------------cc----------------------------cchhhhhhccccCCCcc-CCHHHhcccCCCEEECcC
Confidence 00 111111111 345555 566666666666666666
Q ss_pred CCCCCC-----------------cchhcc--CCCCCcEEEccCCCCCccCccccCCCCCCCEEeCCCCCCCCCCCCcccC
Q 047927 223 NDLYSP-----------------VPEFLA--DFSNLTSLYLSSCGLHGAFPEKILQLPTLETLDLSYNELLQGSLPDFHQ 283 (1005)
Q Consensus 223 n~~~~~-----------------~p~~l~--~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~ 283 (1005)
|.+.+. +|..++ ++++|++|++++|.+.+.+|..++++++|++|++++|..
T Consensus 216 n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~---------- 285 (636)
T 4eco_A 216 SPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRG---------- 285 (636)
T ss_dssp CCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTT----------
T ss_pred CccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCC----------
Confidence 666553 555555 666666666666666656665555555555555555531
Q ss_pred CCCCcEEEcccccccc-cCchhhccC------CCCCEEeecCCccCCCCCc--cCCCCCCCcEEECcCCcCccCCCcccc
Q 047927 284 NLSLETLILSATNFSG-ILPDSIKNL------KNLSRVEFYLCNFNGPIPT--SMSDLSQLVYLDMSFNHFSGPIPSLHM 354 (1005)
Q Consensus 284 ~~~L~~L~L~~n~l~~-~~p~~l~~l------~~L~~L~l~~n~~~~~~~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~ 354 (1005)
+++ .+|..++.+ ++|++|++++|.+. .+|. .++.+++|++|++++|.+.|.+|.+..
T Consensus 286 -------------l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~ 351 (636)
T 4eco_A 286 -------------ISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLPAFGS 351 (636)
T ss_dssp -------------SCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECCCCEE
T ss_pred -------------CccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchhhhCC
Confidence 556 677777765 88888888888888 7777 788888888888888888866665555
Q ss_pred cCcccEEECCCCcCcCCCCccccccccc-ccEEEcCCCcCCCccCccCCCCCCCCEEeCcCcccccccccccccccccCC
Q 047927 355 FRNLAYLDLSYNIFTGGISSIGWEQLLN-LFHVDLSHNNLGGSIPQSLFELPMVQHLLLADNQFDGHVTEISNASSSLLD 433 (1005)
Q Consensus 355 ~~~L~~L~L~~n~l~~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~ 433 (1005)
+++|++|++++|.++ .+|.. +..+++ |++|++++|.++ .+|..+..++ .++|+
T Consensus 352 l~~L~~L~L~~N~l~-~lp~~-l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~-----------------------l~~L~ 405 (636)
T 4eco_A 352 EIKLASLNLAYNQIT-EIPAN-FCGFTEQVENLSFAHNKLK-YIPNIFDAKS-----------------------VSVMS 405 (636)
T ss_dssp EEEESEEECCSSEEE-ECCTT-SEEECTTCCEEECCSSCCS-SCCSCCCTTC-----------------------SSCEE
T ss_pred CCCCCEEECCCCccc-cccHh-hhhhcccCcEEEccCCcCc-ccchhhhhcc-----------------------cCccC
Confidence 667777777777776 55555 667777 777777777776 5665554332 22355
Q ss_pred EEeCCCCccCCCCCcccc-------CcCCCcEEECCCCcceeccchhHHHhcCCCCeEeccCCeeeEecCCcccccCccc
Q 047927 434 TLDLSDNNLEGPIPLSFF-------ELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRLAVVAGSSVYCFPPLL 506 (1005)
Q Consensus 434 ~L~L~~n~l~~~~~~~l~-------~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L 506 (1005)
+|++++|.+++..|..+. .+++|+.|++++|++. .++...+..+++|++|++++|+++.++...+....+
T Consensus 406 ~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~-- 482 (636)
T 4eco_A 406 AIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENE-- 482 (636)
T ss_dssp EEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTE--
T ss_pred EEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccc--
Confidence 555566666666666666 6778999999999988 778777888899999999998888666544332211
Q ss_pred ceEEcCCccCcCCCCCCCCCceeEEECcCCcCCCCCChhhhhhcCCcccEEeCCCCcccCCCCCCccccCCcccEEEecc
Q 047927 507 TTLSLASCKLSAIPNLRKQTKLYHLDLSDNQISGEIPNWLWKIGKDSFNHLNLSHNLLVSLEQPYSISDLTSLSVLDLHS 586 (1005)
Q Consensus 507 ~~L~L~~n~l~~l~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~ 586 (1005)
.+..+++|++|++++|+++ .+|..+.....++|+.|++++|++..+ +..+..+++|++|++++
T Consensus 483 --------------~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~i--p~~~~~l~~L~~L~Ls~ 545 (636)
T 4eco_A 483 --------------NFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSKF--PTQPLNSSTLKGFGIRN 545 (636)
T ss_dssp --------------ECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSSC--CCGGGGCSSCCEEECCS
T ss_pred --------------cccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCCc--ChhhhcCCCCCEEECCC
Confidence 0222335555555555555 344333211111222222222222221 11122334555555554
Q ss_pred CcccccCCCCCCCcceeeCcCCcCccCCCcchhcccCceEEEEecCCcccccCChhhhccCCCCeEEccCccccccCCch
Q 047927 587 NQIQGKIPPLPPNAAYVDYSGNNFTSSIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTC 666 (1005)
Q Consensus 587 n~l~~~~~~~~~~l~~L~ls~n~~~~~~p~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~ 666 (1005)
|+. +++|++.+.+|..+..+++|+.|+|++|++ +.+|..
T Consensus 546 N~~----------------------------------------ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~ 584 (636)
T 4eco_A 546 QRD----------------------------------------AQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEK 584 (636)
T ss_dssp CBC----------------------------------------TTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSC
T ss_pred Ccc----------------------------------------cccCcccccChHHHhcCCCCCEEECCCCcC-CccCHh
Confidence 441 123444555566666666677777777766 355555
Q ss_pred hhhcCcccccEEECCCCcCCc
Q 047927 667 LINMSDSQLGVLNLRRNNLNG 687 (1005)
Q Consensus 667 ~~~l~~~~L~~L~L~~n~l~~ 687 (1005)
+. + +|+.|++++|++..
T Consensus 585 ~~--~--~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 585 IT--P--NISVLDIKDNPNIS 601 (636)
T ss_dssp CC--T--TCCEEECCSCTTCE
T ss_pred Hh--C--cCCEEECcCCCCcc
Confidence 43 2 56666666665553
No 11
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=8e-46 Score=459.44 Aligned_cols=459 Identities=21% Similarity=0.226 Sum_probs=267.4
Q ss_pred CCCCCCCCccccCCCCCcEEECCCCCCCCCcchh--ccCCCCCcEEEccCCCCCccCc-cccCCCCCCCEEeCCCCCCCC
Q 047927 199 CFLSGPVDPSLSNLRSLSVIRLDMNDLYSPVPEF--LADFSNLTSLYLSSCGLHGAFP-EKILQLPTLETLDLSYNELLQ 275 (1005)
Q Consensus 199 n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~--l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~Ls~n~~~~ 275 (1005)
|.+.+..|..|+++++|++|++++|.+.+.+|.. ++++++|++|++++|.+++..+ ..++++++|++|++++|.+..
T Consensus 83 N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~ 162 (844)
T 3j0a_A 83 SKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL 162 (844)
T ss_dssp CCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCC
T ss_pred CcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCe
Confidence 3444445666777777777777777776655543 6677777777777777765543 456667777777777666544
Q ss_pred CCCCcccCC--CCCcEEEcccccccccCchhhccCCC------CCEEeecCCccCCCCCccCCC---CCCCcEEECcCCc
Q 047927 276 GSLPDFHQN--LSLETLILSATNFSGILPDSIKNLKN------LSRVEFYLCNFNGPIPTSMSD---LSQLVYLDMSFNH 344 (1005)
Q Consensus 276 ~~~~~~~~~--~~L~~L~L~~n~l~~~~p~~l~~l~~------L~~L~l~~n~~~~~~~~~l~~---l~~L~~L~L~~n~ 344 (1005)
.....+..+ ++|+.|++++|.+.+..|..++.+++ |+.|++++|.+.+..+..+.. ..+++.+.++.+.
T Consensus 163 ~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~ 242 (844)
T 3j0a_A 163 VCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHI 242 (844)
T ss_dssp CCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSC
T ss_pred eCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccc
Confidence 333344333 45555555555555554444444333 555555555444444433322 1334444443222
Q ss_pred CccCCCcccccCcccEEECCCCcCcCCCCcccccc--cccccEEEcCCCcCCCccCccCCCCCCCCEEeCcCcccccccc
Q 047927 345 FSGPIPSLHMFRNLAYLDLSYNIFTGGISSIGWEQ--LLNLFHVDLSHNNLGGSIPQSLFELPMVQHLLLADNQFDGHVT 422 (1005)
Q Consensus 345 l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~--l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 422 (1005)
.... ...+.+.+.. ...+.. .++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+
T Consensus 243 ~~~~--------------~~~~~l~~~~-~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~ 307 (844)
T 3j0a_A 243 MGAG--------------FGFHNIKDPD-QNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIAD 307 (844)
T ss_dssp CBCS--------------SSCSSSTTGG-GTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECT
T ss_pred cccc--------------ccccccCCCC-hhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCCh
Confidence 1100 0011111111 111222 2567777777777776666667777777777777776664433
Q ss_pred cccccccccCCEEeCCCCccCCCCCccccCcCCCcEEECCCCcceeccchhHHHhcCCCCeEeccCCeeeEecCCccccc
Q 047927 423 EISNASSSLLDTLDLSDNNLEGPIPLSFFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRLAVVAGSSVYCF 502 (1005)
Q Consensus 423 ~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~ 502 (1005)
.. ...+++|++|++++|.+++..+..|..+++|+.|++++|++. .++...+..+++|++|++++|.++.++.
T Consensus 308 ~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~i~~------ 379 (844)
T 3j0a_A 308 EA-FYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIA-IIQDQTFKFLEKLQTLDLRDNALTTIHF------ 379 (844)
T ss_dssp TT-TTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCC-CCCSSCSCSCCCCCEEEEETCCSCCCSS------
T ss_pred HH-hcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCC-ccChhhhcCCCCCCEEECCCCCCCcccC------
Confidence 22 223556777777777777666777777788888888887775 4555566777777777777777664432
Q ss_pred CcccceEEcCCccCcCCCCCCCCCceeEEECcCCcCCCCCChhhhhhcCCcccEEeCCCCcccCCCCCCccccCCcccEE
Q 047927 503 PPLLTTLSLASCKLSAIPNLRKQTKLYHLDLSDNQISGEIPNWLWKIGKDSFNHLNLSHNLLVSLEQPYSISDLTSLSVL 582 (1005)
Q Consensus 503 ~~~L~~L~L~~n~l~~l~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L 582 (1005)
.++|+.|++++|+++.+|.. ..+++.|++++|.+. .++....+..+++|++|
T Consensus 380 ~~~L~~L~l~~N~l~~l~~~--~~~l~~L~ls~N~l~--------------------------~l~~~~~~~~l~~L~~L 431 (844)
T 3j0a_A 380 IPSIPDIFLSGNKLVTLPKI--NLTANLIHLSENRLE--------------------------NLDILYFLLRVPHLQIL 431 (844)
T ss_dssp CCSCSEEEEESCCCCCCCCC--CTTCCEEECCSCCCC--------------------------SSTTHHHHTTCTTCCEE
T ss_pred CCCcchhccCCCCccccccc--ccccceeecccCccc--------------------------cCchhhhhhcCCcccee
Confidence 34466666666666655542 234555555555555 33222223345566666
Q ss_pred EeccCcccccCCCCCCCcceeeCcCCcCccCCCcchhcccCceEEEEecCCccc-----ccCChhhhccCCCCeEEccCc
Q 047927 583 DLHSNQIQGKIPPLPPNAAYVDYSGNNFTSSIPVDIGSFMSLSIFFSFSKNSLT-----GVIPESICNATNLLVLDLSYN 657 (1005)
Q Consensus 583 ~l~~n~l~~~~~~~~~~l~~L~ls~n~~~~~~p~~~~~~~~~L~~L~l~~n~l~-----~~~p~~l~~l~~L~~L~Ls~N 657 (1005)
++++|++++..+.. ....++.|+.|++++|.++ +..+..|..+++|+.|+|++|
T Consensus 432 ~Ls~N~l~~~~~~~---------------------~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N 490 (844)
T 3j0a_A 432 ILNQNRFSSCSGDQ---------------------TPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHN 490 (844)
T ss_dssp EEESCCCCCCCSSS---------------------SSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHH
T ss_pred eCCCCccccccccc---------------------ccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCC
Confidence 66666665322210 0001223333333333333 233455667777777777777
Q ss_pred cccccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCccEEeCCCCeecccCcccccCCCCCCEEECCCCcCCCC
Q 047927 658 YLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDT 736 (1005)
Q Consensus 658 ~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 736 (1005)
++++..|..+..++ +|+.|+|++|++++..+..+. ++|++|+|++|++++..|+.|. +|+.|++++|++.+.
T Consensus 491 ~l~~~~~~~~~~l~--~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~---~L~~l~l~~Np~~C~ 562 (844)
T 3j0a_A 491 YLNSLPPGVFSHLT--ALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVFV---SLSVLDITHNKFICE 562 (844)
T ss_dssp HHTTCCTTSSSSCC--SCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCCS---SCCEEEEEEECCCCS
T ss_pred cccccChhHccchh--hhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHhC---CcCEEEecCCCcccc
Confidence 77777777777776 777777777777777666665 6788888888888877776653 677788888877653
No 12
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=7e-47 Score=458.11 Aligned_cols=492 Identities=18% Similarity=0.223 Sum_probs=339.2
Q ss_pred ccCCCcHHHHHHHHHHhhhCCCCCCCcccccCCCCCC-----CC--ccc------------ceeEECCCCCEEEEEcCCC
Q 047927 4 VSGQCQSDQQSLLLQMKSRLTFDSSVSFRMVQWSQSN-----DC--CTW------------SGVDCDEAGRVIGLDLSEE 64 (1005)
Q Consensus 4 ~~~~~~~~~~~~ll~~k~~~~~~~~~~~~~~~w~~~~-----~~--c~w------------~gv~c~~~~~v~~L~L~~~ 64 (1005)
..+++..+|++||++||+++.+ | +|+.+. +| |.| .||.|+..+||+.|+|+++
T Consensus 262 ~~~~~~~~d~~ALl~~k~~l~~-~-------~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~~~~V~~L~Ls~~ 333 (876)
T 4ecn_A 262 KETAEYIKDYKALKAIWEALDG-K-------NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGF 333 (876)
T ss_dssp CCCCHHHHHHHHHHHHHHHTTG-G-------GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECTTSCEEEEECTTT
T ss_pred cccccchHHHHHHHHHHHHcCC-C-------CCCcCCCcccccCCccccccccccccccCcCceEecCCCCEEEEECccC
Confidence 3455667899999999999953 3 575543 55 999 9999998899999999999
Q ss_pred CcccccCCCcccccccccceeec-CCccCCCCCCCCc-c-----------------------------------------
Q 047927 65 SISAGIDNSSSLFSLKYLQSLNL-AFNMFNATEIPSG-L----------------------------------------- 101 (1005)
Q Consensus 65 ~l~~~~~~~~~l~~l~~L~~L~L-s~~~~~~~~lp~~-l----------------------------------------- 101 (1005)
++.|.+ ++.++++++|++|+| ++|.+.+. .|-. .
T Consensus 334 ~L~G~i--p~~l~~L~~L~~LdLss~N~lsG~-~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~ 410 (876)
T 4ecn_A 334 GAKGRV--PDAIGQLTELKVLSFGTHSETVSG-RLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINR 410 (876)
T ss_dssp CCEEEE--CGGGGGCTTCCEEESCCTTHHHHT-TCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHT
T ss_pred CCCCcC--chHHhccccceEeeeccccccccc-ccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhh
Confidence 999998 899999999999999 88876544 1211 0
Q ss_pred ---------cCCCCCcEEEccc--CCCcCCCcccccCCCCCcEEeCCCcccccCccccCCCChhhhhhcCccCceeecCC
Q 047927 102 ---------GNLTNLTTLNLSN--AGFAGQIPIQVSGMTRLVTLDLSGMYFVRAPLKLENPNLSGLLQNLAELRELYLDG 170 (1005)
Q Consensus 102 ---------~~l~~L~~L~Ls~--n~~~~~lp~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 170 (1005)
.....++.+.+.. |.+.+ +|..++++++|++|++++|.++......... ..+.
T Consensus 411 ~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~---------------~~s~ 474 (876)
T 4ecn_A 411 NPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWE---------------DANS 474 (876)
T ss_dssp CTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCS---------------CTTS
T ss_pred CccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCccccccc---------------cccc
Confidence 1112222233332 55665 7777777777777777777765410000000 0000
Q ss_pred ccCCC-chhhHHHHHh-ccCCCccEEEccCCCCCCCCCccccCCCCCcEEECCCCC-CCC-CcchhccCCC-------CC
Q 047927 171 VNISA-PGIEWCQALS-SLVPKLQVLSLSGCFLSGPVDPSLSNLRSLSVIRLDMND-LYS-PVPEFLADFS-------NL 239 (1005)
Q Consensus 171 ~~~~~-~~~~~~~~l~-~l~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~-~~~-~~p~~l~~l~-------~L 239 (1005)
+.... .+ ..+. ..+++|++|+|++|.+.+.+|..++++++|+.|++++|. +.+ .+|..+++++ +|
T Consensus 475 n~~~g~iP----~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L 550 (876)
T 4ecn_A 475 DYAKQYEN----EELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKI 550 (876)
T ss_dssp HHHHHHTT----SCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTC
T ss_pred ccccccCC----hhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCc
Confidence 00000 00 0011 012788888888888889999999999999999999998 777 7787666554 99
Q ss_pred cEEEccCCCCCccCcc--ccCCCCCCCEEeCCCCCCCCCCCCcccCCCCCcEEEcccccccccCchhhccCCC-CCEEee
Q 047927 240 TSLYLSSCGLHGAFPE--KILQLPTLETLDLSYNELLQGSLPDFHQNLSLETLILSATNFSGILPDSIKNLKN-LSRVEF 316 (1005)
Q Consensus 240 ~~L~L~~n~l~~~~p~--~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~-L~~L~l 316 (1005)
++|++++|.++ .+|. .++++++|++|++++|.+. .++.+..+++|+.|++++|.++ .+|..+..+++ |+.|++
T Consensus 551 ~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~--~lp~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~L 626 (876)
T 4ecn_A 551 QIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR--HLEAFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGF 626 (876)
T ss_dssp CEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC--BCCCCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEEC
T ss_pred cEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc--cchhhcCCCcceEEECcCCccc-cchHHHhhccccCCEEEC
Confidence 99999999999 7888 8999999999999999876 5557888999999999999988 78888899988 999999
Q ss_pred cCCccCCCCCccCCCCCC--CcEEECcCCcCccCCCccc------ccCcccEEECCCCcCcCCCCcccccccccccEEEc
Q 047927 317 YLCNFNGPIPTSMSDLSQ--LVYLDMSFNHFSGPIPSLH------MFRNLAYLDLSYNIFTGGISSIGWEQLLNLFHVDL 388 (1005)
Q Consensus 317 ~~n~~~~~~~~~l~~l~~--L~~L~L~~n~l~~~~~~~~------~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L 388 (1005)
++|.+. .+|..+..++. |+.|++++|.+.+.++.+. ...+|+.|++++|.++ .+|...+..+++|+.|++
T Consensus 627 s~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~L 704 (876)
T 4ecn_A 627 SHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIIL 704 (876)
T ss_dssp CSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEEC
T ss_pred cCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEEC
Confidence 999988 77877776654 9999999999887665433 3347889999999888 566654567888999999
Q ss_pred CCCcCCCccCccCCCC--------CCCCEEeCcCcccccccccccc-cccccCCEEeCCCCccCCCCCccccCcCCCcEE
Q 047927 389 SHNNLGGSIPQSLFEL--------PMVQHLLLADNQFDGHVTEISN-ASSSLLDTLDLSDNNLEGPIPLSFFELKNLKIL 459 (1005)
Q Consensus 389 ~~n~l~~~~~~~l~~l--------~~L~~L~l~~n~l~~~~~~~~~-~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 459 (1005)
++|.++ .+|..+... ++|+.|++++|++.. ++.... ..+++|+.|++++|.+++ +|..+..+++|+.|
T Consensus 705 s~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~-lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L 781 (876)
T 4ecn_A 705 SNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS-LSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAF 781 (876)
T ss_dssp CSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCCC-CCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEE
T ss_pred CCCcCC-ccChHHhccccccccccCCccEEECCCCCCcc-chHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEE
Confidence 988888 666655432 267777777777663 332222 345667777777777765 56666677777777
Q ss_pred ECCC------CcceeccchhHHHhcCCCCeEeccCCeeeEecCCcccccCcccceEEcCCccCcCCCC-CCCCCceeEEE
Q 047927 460 LLSS------NKFVGTIELDAIQRLRNLFRLDLSYNRLAVVAGSSVYCFPPLLTTLSLASCKLSAIPN-LRKQTKLYHLD 532 (1005)
Q Consensus 460 ~L~~------n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~l~~-l~~l~~L~~L~ 532 (1005)
++++ |++.+.+| ..+..+++ |+.|++++|+++.+|. +. ++|+.|+
T Consensus 782 ~Ls~N~~ls~N~l~~~ip-~~l~~L~~-------------------------L~~L~Ls~N~L~~Ip~~l~--~~L~~Ld 833 (876)
T 4ecn_A 782 GIRHQRDAEGNRILRQWP-TGITTCPS-------------------------LIQLQIGSNDIRKVDEKLT--PQLYILD 833 (876)
T ss_dssp ECCCCBCTTCCBCCCCCC-TTGGGCSS-------------------------CCEEECCSSCCCBCCSCCC--SSSCEEE
T ss_pred ECCCCCCcccccccccCh-HHHhcCCC-------------------------CCEEECCCCCCCccCHhhc--CCCCEEE
Confidence 7755 44443333 23444444 4555555555555554 22 5777888
Q ss_pred CcCCcCCCCCChhhhhhcCCcccEEeCCCCccc
Q 047927 533 LSDNQISGEIPNWLWKIGKDSFNHLNLSHNLLV 565 (1005)
Q Consensus 533 Ls~n~l~~~~p~~~~~~~~~~L~~L~L~~n~l~ 565 (1005)
|++|++....+..+.... ....+.+.+|+..
T Consensus 834 Ls~N~l~~i~~~~~~~~~--~~~~~~L~~n~~~ 864 (876)
T 4ecn_A 834 IADNPNISIDVTSVCPYI--EAGMYVLLYDKTQ 864 (876)
T ss_dssp CCSCTTCEEECGGGHHHH--HTTCCEEECCTTS
T ss_pred CCCCCCCccChHHccccc--cchheeecCCCcc
Confidence 888877655444443321 2334445555443
No 13
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.6e-45 Score=439.63 Aligned_cols=239 Identities=20% Similarity=0.177 Sum_probs=170.1
Q ss_pred ChhhhccCCCCeEEccCccccccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCccEEeCCCCeecccC--cccc
Q 047927 640 PESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMV--PKSL 717 (1005)
Q Consensus 640 p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--p~~l 717 (1005)
|..+..+ +|+.|++++|.+. .+|. ..++ +|+.|++++|.+.+..+. ..+++|++|++++|++++.. |..+
T Consensus 298 ~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~--~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~ 369 (570)
T 2z63_A 298 KDFSYNF-GWQHLELVNCKFG-QFPT--LKLK--SLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSD 369 (570)
T ss_dssp CBCCSCC-CCSEEEEESCBCS-SCCB--CBCS--SCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHH
T ss_pred hhhhccC-CccEEeeccCccc-ccCc--cccc--ccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccc
Confidence 3334444 5555555555555 3333 2333 555666666555544443 45556666666666666443 5556
Q ss_pred cCCCCCCEEECCCCcCCCCcchhhhcCCCCcEEecCCCcCCcccCCCCCCCCCCCccEEEccCCcccccCChHHHhhhhh
Q 047927 718 ANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEA 797 (1005)
Q Consensus 718 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~~~~~~p~~~~~~l~~ 797 (1005)
..+++|++|++++|++++..+. +..+++|++|++++|++.+... +..+..+++|+.|++++|++.+..|..+
T Consensus 370 ~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~------ 441 (570)
T 2z63_A 370 FGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSE-FSVFLSLRNLIYLDISHTHTRVAFNGIF------ 441 (570)
T ss_dssp HTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTT-SCTTTTCTTCCEEECTTSCCEECCTTTT------
T ss_pred cccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccc-hhhhhcCCCCCEEeCcCCcccccchhhh------
Confidence 6666666666666666654443 6666666666666666655431 1345667777777777777766555321
Q ss_pred hhhccCCchhhhchhhheecccccccccccEEEEEcchHHHHHHhcccceEEECCCCeee-ccCcccccCCCCCCEEECC
Q 047927 798 MMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFE-GPIPEEMGLLQSLCALNLS 876 (1005)
Q Consensus 798 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~-g~ip~~~~~l~~L~~L~Ls 876 (1005)
..+++|+.|++++|+++ +.+|..++.+++|++|+|+
T Consensus 442 -------------------------------------------~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~ 478 (570)
T 2z63_A 442 -------------------------------------------NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 478 (570)
T ss_dssp -------------------------------------------TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECT
T ss_pred -------------------------------------------hcCCcCcEEECcCCcCccccchhhhhcccCCCEEECC
Confidence 13567888999999987 6799999999999999999
Q ss_pred CCcCcccCchhhhcCCCCCEEeCCCCcCcccCcccccCCCCCCeEEccCCcccccCCCCCc
Q 047927 877 HNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLNLSYNHLVGRIPTSTQ 937 (1005)
Q Consensus 877 ~N~l~g~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~~ 937 (1005)
+|++++.+|..++++++|+.|++++|++++.+|..+.++++|++|++++|+++|.+|....
T Consensus 479 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~ 539 (570)
T 2z63_A 479 QCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDY 539 (570)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHH
T ss_pred CCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcchHH
Confidence 9999999999999999999999999999999999999999999999999999999997543
No 14
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.8e-44 Score=428.27 Aligned_cols=475 Identities=20% Similarity=0.198 Sum_probs=277.0
Q ss_pred CcEEEcccccccccCchhhccCCCCCEEeecCCccCCCCCccCCCCCCCcEEECcCCcCccCCCc-ccccCcccEEECCC
Q 047927 287 LETLILSATNFSGILPDSIKNLKNLSRVEFYLCNFNGPIPTSMSDLSQLVYLDMSFNHFSGPIPS-LHMFRNLAYLDLSY 365 (1005)
Q Consensus 287 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~-~~~~~~L~~L~L~~ 365 (1005)
|++|++++|.+++..|..|.++++|++|++++|.+.+..|..|+.+++|++|++++|.+.+..+. +..+++|++|++++
T Consensus 28 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 107 (549)
T 2z81_A 28 MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMG 107 (549)
T ss_dssp CCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTT
T ss_pred ccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCC
Confidence 33333333444444444555555555555555555554445555555555555555555543332 23333444444444
Q ss_pred CcCcCC-CCcccccccccccEEEcCCCcCCCccC-ccCCCCCCCCEEeCcCcccccccccccccccccCCEEeCCCCccC
Q 047927 366 NIFTGG-ISSIGWEQLLNLFHVDLSHNNLGGSIP-QSLFELPMVQHLLLADNQFDGHVTEISNASSSLLDTLDLSDNNLE 443 (1005)
Q Consensus 366 n~l~~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~ 443 (1005)
|.+++. ++.. +..+++|++|++++|.+.+.++ ..+..+++ |++|++++|.++
T Consensus 108 n~l~~~~~~~~-~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~-------------------------L~~L~L~~n~l~ 161 (549)
T 2z81_A 108 NPYQTLGVTSL-FPNLTNLQTLRIGNVETFSEIRRIDFAGLTS-------------------------LNELEIKALSLR 161 (549)
T ss_dssp CCCSSSCSSCS-CTTCTTCCEEEEEESSSCCEECTTTTTTCCE-------------------------EEEEEEEETTCC
T ss_pred Ccccccchhhh-hhccCCccEEECCCCccccccCHhhhhcccc-------------------------cCeeeccCCccc
Confidence 444321 2222 5566666666666666333333 34444444 555555555666
Q ss_pred CCCCccccCcCCCcEEECCCCcceeccchhHHHhcCCCCeEeccCCeeeEecCCcccccCcccceEEcCCccCcCCCCCC
Q 047927 444 GPIPLSFFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRLAVVAGSSVYCFPPLLTTLSLASCKLSAIPNLR 523 (1005)
Q Consensus 444 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~l~~l~ 523 (1005)
+..|..+..+++|+.|++++|.+. .++...+..+++|++|++++|+++..+... .+...
T Consensus 162 ~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--------------------~~~~~ 220 (549)
T 2z81_A 162 NYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSP--------------------LPVDE 220 (549)
T ss_dssp EECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCC--------------------CSSCC
T ss_pred ccChhhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCccccccccc--------------------cchhh
Confidence 677788888899999999998875 555555667888888888888766432110 01134
Q ss_pred CCCceeEEECcCCcCCCCCChhhhhhcCCcccEEeCCCCcccCCCCCCccccCCcccEEEeccCcccccCCCCCCCccee
Q 047927 524 KQTKLYHLDLSDNQISGEIPNWLWKIGKDSFNHLNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIPPLPPNAAYV 603 (1005)
Q Consensus 524 ~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 603 (1005)
.+++|+.|++++|.+.+..+..+... +..+++|+.+++++|.+.+.........
T Consensus 221 ~~~~L~~L~l~~n~l~~~~~~~l~~~-----------------------~~~~~~L~~l~l~~~~~~~~~~~~~~~~--- 274 (549)
T 2z81_A 221 VSSPMKKLAFRGSVLTDESFNELLKL-----------------------LRYILELSEVEFDDCTLNGLGDFNPSES--- 274 (549)
T ss_dssp CCCCCCEEEEESCEEEHHHHHHHHGG-----------------------GGGCTTCCEEEEESCEEECCSCCCCCTT---
T ss_pred hhhcccceeccccccchhHHHHHHHH-----------------------hhhhccccccccccccccccccccccch---
Confidence 46678888888887775555444321 2234556666666666654211000000
Q ss_pred eCcCCcCccCCCcchhcccCceEEEEecCCcccc-----cCChhhhccCCCCeEEccCccccccCCchh-hhcCcccccE
Q 047927 604 DYSGNNFTSSIPVDIGSFMSLSIFFSFSKNSLTG-----VIPESICNATNLLVLDLSYNYLSGMIPTCL-INMSDSQLGV 677 (1005)
Q Consensus 604 ~ls~n~~~~~~p~~~~~~~~~L~~L~l~~n~l~~-----~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~-~~l~~~~L~~ 677 (1005)
.....+..++.+++.++.+.. .++..+....+|+.|++++|.+. .+|..+ ..++ +|++
T Consensus 275 -------------~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~--~L~~ 338 (549)
T 2z81_A 275 -------------DVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLK--SLEF 338 (549)
T ss_dssp -------------TCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCT--TCCE
T ss_pred -------------hhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCc--cccE
Confidence 000012333444444433321 12223344556666777766665 455554 3454 5666
Q ss_pred EECCCCcCCcccc---CccCCCCCccEEeCCCCeecccCc--ccccCCCCCCEEECCCCcCCCCcchhhhcCCCCcEEec
Q 047927 678 LNLRRNNLNGTVS---ATFPANCSLRTLDLNGNQLEGMVP--KSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLIL 752 (1005)
Q Consensus 678 L~L~~n~l~~~~~---~~~~~l~~L~~L~L~~N~l~~~~p--~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 752 (1005)
|++++|++++..| ..+..+++|++|++++|++++..+ ..+..+++|++|++++|+++ .+|.+
T Consensus 339 L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~------------ 405 (549)
T 2z81_A 339 LDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDS------------ 405 (549)
T ss_dssp EECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSC------------
T ss_pred EEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChh------------
Confidence 6666666665442 234455555555555555554321 33455555555555555554 23444
Q ss_pred CCCcCCcccCCCCCCCCCCCccEEEccCCcccccCChHHHhhhhhhhhccCCchhhhchhhheecccccccccccEEEEE
Q 047927 753 RSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTI 832 (1005)
Q Consensus 753 ~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 832 (1005)
+..+++|++|++++|++++ +|..
T Consensus 406 --------------~~~~~~L~~L~Ls~N~l~~-l~~~------------------------------------------ 428 (549)
T 2z81_A 406 --------------CQWPEKMRFLNLSSTGIRV-VKTC------------------------------------------ 428 (549)
T ss_dssp --------------CCCCTTCCEEECTTSCCSC-CCTT------------------------------------------
T ss_pred --------------hcccccccEEECCCCCccc-ccch------------------------------------------
Confidence 4444555555555555442 1210
Q ss_pred cchHHHHHHhcccceEEECCCCeeeccCcccccCCCCCCEEECCCCcCcccCchhhhcCCCCCEEeCCCCcCcccCcccc
Q 047927 833 KGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQL 912 (1005)
Q Consensus 833 ~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l 912 (1005)
..+.|+.|||++|++++.+ +.+++|++|+|++|+++ .||. .+.+++|++|||++|++++.+|..+
T Consensus 429 ---------~~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~ 493 (549)
T 2z81_A 429 ---------IPQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIF 493 (549)
T ss_dssp ---------SCTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGG
T ss_pred ---------hcCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHH
Confidence 1235778888888888753 57899999999999999 7887 5789999999999999999999999
Q ss_pred cCCCCCCeEEccCCcccccCCCC
Q 047927 913 ASLNFLSVLNLSYNHLVGRIPTS 935 (1005)
Q Consensus 913 ~~l~~L~~L~ls~N~l~g~ip~~ 935 (1005)
..+++|++|++++|+++|.+|..
T Consensus 494 ~~l~~L~~L~l~~N~~~~~~~~~ 516 (549)
T 2z81_A 494 DRLTSLQKIWLHTNPWDCSCPRI 516 (549)
T ss_dssp GGCTTCCEEECCSSCBCCCHHHH
T ss_pred hcCcccCEEEecCCCccCCCccH
Confidence 99999999999999999998843
No 15
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=3.6e-44 Score=428.03 Aligned_cols=504 Identities=20% Similarity=0.171 Sum_probs=352.3
Q ss_pred CCccEEEccCCCCCCCCCccccCCCCCcEEECCCCCCCCCcchhccCCCCCcEEEccCCCCCccCccccCCCCCCCEEeC
Q 047927 189 PKLQVLSLSGCFLSGPVDPSLSNLRSLSVIRLDMNDLYSPVPEFLADFSNLTSLYLSSCGLHGAFPEKILQLPTLETLDL 268 (1005)
Q Consensus 189 ~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 268 (1005)
+++++|++++|.+++..+.+|.++++|++|++++|.+.+..+..|+++++|++|++++|.+++..|..|..+++|++|++
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence 67888888888888877788889999999999999888777778888999999999999988777788889999999999
Q ss_pred CCCCCCCCCCCcccCCCCCcEEEcccccccc-cCchhhccCCCCCEEeecCCccCCCCCccCCCCCCC----cEEECcCC
Q 047927 269 SYNELLQGSLPDFHQNLSLETLILSATNFSG-ILPDSIKNLKNLSRVEFYLCNFNGPIPTSMSDLSQL----VYLDMSFN 343 (1005)
Q Consensus 269 s~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L----~~L~L~~n 343 (1005)
++|.+.......+..+++|++|++++|.+++ .+|..++++++|++|++++|.+.+..+..++.+++| +.+++++|
T Consensus 108 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n 187 (570)
T 2z63_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (570)
T ss_dssp TTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred cccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCC
Confidence 9988766554457778888888888888876 468888888888888888888877777777777777 78888888
Q ss_pred cCccCCCcccccCcccEEECCCCcCcCCCCcccccccccccEEEcCCCcCCCccCccCCCCCCCCEEeCcCccccccccc
Q 047927 344 HFSGPIPSLHMFRNLAYLDLSYNIFTGGISSIGWEQLLNLFHVDLSHNNLGGSIPQSLFELPMVQHLLLADNQFDGHVTE 423 (1005)
Q Consensus 344 ~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~ 423 (1005)
.+.+..+......+|++|++++|..........+..+++++...+....+.. ...++.+ ....+.
T Consensus 188 ~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~--------~~~l~~~--~~~~~~----- 252 (570)
T 2z63_A 188 PMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN--------EGNLEKF--DKSALE----- 252 (570)
T ss_dssp CCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCC--------CSSCEEC--CTTTTG-----
T ss_pred CceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccC--------chhhhhc--chhhhc-----
Confidence 8777666555555777777777643322211224445555544443222110 0111100 000000
Q ss_pred ccccccccCCEEeCCCC-ccCCCCCccccCcCCCcEEECCCCcceeccchhHHHhcCCCCeEeccCCeeeEecCCccccc
Q 047927 424 ISNASSSLLDTLDLSDN-NLEGPIPLSFFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRLAVVAGSSVYCF 502 (1005)
Q Consensus 424 ~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~ 502 (1005)
....-.++.++++++ .+.+..+..+. .+++|++|++++|.+..++... ..
T Consensus 253 --~l~~l~l~~l~l~~~~~~~~~~~~~~~-------------------------~l~~L~~L~l~~~~l~~l~~~~--~~ 303 (570)
T 2z63_A 253 --GLCNLTIEEFRLAYLDYYLDDIIDLFN-------------------------CLTNVSSFSLVSVTIERVKDFS--YN 303 (570)
T ss_dssp --GGGGSEEEEEEEEETTEEESCSTTTTG-------------------------GGTTCSEEEEESCEECSCCBCC--SC
T ss_pred --cccccchhhhhhhcchhhhhhchhhhc-------------------------CcCcccEEEecCccchhhhhhh--cc
Confidence 000011333333333 33334444444 4444455555444444333221 11
Q ss_pred CcccceEEcCCccCcCCCCCCCCCceeEEECcCCcCCCCCChhhhhhcCCcccEEeCCCCcccCCCCCCccccCCcccEE
Q 047927 503 PPLLTTLSLASCKLSAIPNLRKQTKLYHLDLSDNQISGEIPNWLWKIGKDSFNHLNLSHNLLVSLEQPYSISDLTSLSVL 582 (1005)
Q Consensus 503 ~~~L~~L~L~~n~l~~l~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L 582 (1005)
. .|++|++++|.+..+|. ..+++|+.|++++|.+.+..+. ..+++|++|
T Consensus 304 ~-~L~~L~l~~n~~~~l~~-~~l~~L~~L~l~~n~~~~~~~~-----------------------------~~~~~L~~L 352 (570)
T 2z63_A 304 F-GWQHLELVNCKFGQFPT-LKLKSLKRLTFTSNKGGNAFSE-----------------------------VDLPSLEFL 352 (570)
T ss_dssp C-CCSEEEEESCBCSSCCB-CBCSSCCEEEEESCBSCCBCCC-----------------------------CBCTTCCEE
T ss_pred C-CccEEeeccCcccccCc-ccccccCEEeCcCCcccccccc-----------------------------ccCCCCCEE
Confidence 2 46777777777666664 4667888888888877644432 123455555
Q ss_pred EeccCcccccCCCCCCCcceeeCcCCcCccCCCcchhcccCceEEEEecCCcccccCChhhhccCCCCeEEccCcccccc
Q 047927 583 DLHSNQIQGKIPPLPPNAAYVDYSGNNFTSSIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGM 662 (1005)
Q Consensus 583 ~l~~n~l~~~~~~~~~~l~~L~ls~n~~~~~~p~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 662 (1005)
++++|.+++.. ..|..+ ..++.|++|++++|.+++..+. +..+++|+.|++++|.+.+.
T Consensus 353 ~l~~n~l~~~~-------------------~~~~~~-~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~ 411 (570)
T 2z63_A 353 DLSRNGLSFKG-------------------CCSQSD-FGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQM 411 (570)
T ss_dssp ECCSSCCBEEE-------------------EEEHHH-HTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESC
T ss_pred eCcCCccCccc-------------------cccccc-cccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccc
Confidence 55555544211 001111 1345566666666666654444 77888999999999998876
Q ss_pred CC-chhhhcCcccccEEECCCCcCCccccCccCCCCCccEEeCCCCeec-ccCcccccCCCCCCEEECCCCcCCCCcchh
Q 047927 663 IP-TCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLE-GMVPKSLANCSVLEILDLGNNQFDDTFPCW 740 (1005)
Q Consensus 663 ~p-~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~ 740 (1005)
.| ..+..++ +|++|++++|.+.+..|..|..+++|++|++++|+++ +.+|..+..+++|++|++++|++++..|.+
T Consensus 412 ~~~~~~~~l~--~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~ 489 (570)
T 2z63_A 412 SEFSVFLSLR--NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA 489 (570)
T ss_dssp TTSCTTTTCT--TCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTT
T ss_pred cchhhhhcCC--CCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhh
Confidence 66 4677777 8999999999999988999999999999999999998 578899999999999999999999988999
Q ss_pred hhcCCCCcEEecCCCcCCcccCCCCCCCCCCCccEEEccCCcccccCChHHH
Q 047927 741 VKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWL 792 (1005)
Q Consensus 741 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~~~~~~p~~~~ 792 (1005)
|..+++|++|++++|++++.. |..+..+++|+.|++++|+++|.+|..++
T Consensus 490 ~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~N~~~~~~~~~~~ 539 (570)
T 2z63_A 490 FNSLSSLQVLNMASNQLKSVP--DGIFDRLTSLQKIWLHTNPWDCSCPRIDY 539 (570)
T ss_dssp TTTCTTCCEEECCSSCCSCCC--TTTTTTCTTCCEEECCSSCBCCCTTTTHH
T ss_pred hhcccCCCEEeCCCCcCCCCC--HHHhhcccCCcEEEecCCcccCCCcchHH
Confidence 999999999999999998765 66788999999999999999999997554
No 16
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=2.5e-43 Score=418.39 Aligned_cols=493 Identities=18% Similarity=0.170 Sum_probs=319.5
Q ss_pred EEECCCCCCCCCcchhccCCCCCcEEEccCCCCCccCccccCCCCCCCEEeCCCCCCCCCCCCcccCCCCCcEEEccccc
Q 047927 217 VIRLDMNDLYSPVPEFLADFSNLTSLYLSSCGLHGAFPEKILQLPTLETLDLSYNELLQGSLPDFHQNLSLETLILSATN 296 (1005)
Q Consensus 217 ~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~L~~L~L~~n~ 296 (1005)
+.+.+++.+. .+|..+. ++|++|++++|++++..|..+.++++|++|++++|.+.......|..+++|++|++++|.
T Consensus 9 ~c~~~~~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~ 85 (549)
T 2z81_A 9 VCDGRSRSFT-SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNH 85 (549)
T ss_dssp EEECTTSCCS-SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC
T ss_pred eEECCCCccc-cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCc
Confidence 3456666664 3455443 678888888888887777777888888888888877655444456666677777777777
Q ss_pred ccccCchhhccCCCCCEEeecCCccCC-CCCccCCCCCCCcEEECcCCcCccCCCcccccCcccEEECCCCcCcCCCCcc
Q 047927 297 FSGILPDSIKNLKNLSRVEFYLCNFNG-PIPTSMSDLSQLVYLDMSFNHFSGPIPSLHMFRNLAYLDLSYNIFTGGISSI 375 (1005)
Q Consensus 297 l~~~~p~~l~~l~~L~~L~l~~n~~~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 375 (1005)
+++..|..|+++++|++|++++|.+.+ ..|..++.+++|++|++++|.+. +.++..
T Consensus 86 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~-----------------------~~~~~~ 142 (549)
T 2z81_A 86 LSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETF-----------------------SEIRRI 142 (549)
T ss_dssp CCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSC-----------------------CEECTT
T ss_pred cCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccc-----------------------cccCHh
Confidence 666666666666666666666666654 23455666666666666666532 233322
Q ss_pred cccccccccEEEcCCCcCCCccCccCCCCCCCCEEeCcCcccccccccccccccccCCEEeCCCCccCCCC--C-ccccC
Q 047927 376 GWEQLLNLFHVDLSHNNLGGSIPQSLFELPMVQHLLLADNQFDGHVTEISNASSSLLDTLDLSDNNLEGPI--P-LSFFE 452 (1005)
Q Consensus 376 ~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~--~-~~l~~ 452 (1005)
.+..+++|++|++++|.+++..|..+..+++|++|+++.|.+.. ++......+++|++|++++|.+++.. + .....
T Consensus 143 ~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~ 221 (549)
T 2z81_A 143 DFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAF-LLEIFADILSSVRYLELRDTNLARFQFSPLPVDEV 221 (549)
T ss_dssp TTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTT-HHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCC
T ss_pred hhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccc-cchhhHhhcccccEEEccCCccccccccccchhhh
Confidence 35566666677777776666666666667777777776666542 22222333566777777777776532 1 12245
Q ss_pred cCCCcEEECCCCcceeccchh---HHHhcCCCCeEeccCCeeeEecCCcccccCcccceEEcCCccCcCCCCCCCCCcee
Q 047927 453 LKNLKILLLSSNKFVGTIELD---AIQRLRNLFRLDLSYNRLAVVAGSSVYCFPPLLTTLSLASCKLSAIPNLRKQTKLY 529 (1005)
Q Consensus 453 l~~L~~L~L~~n~l~~~~~~~---~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~l~~l~~l~~L~ 529 (1005)
+++|+.|++++|.+.+..+.. .+..+++|+.+++++|.+..+...... ..+.+..++
T Consensus 222 ~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~-----------------~~~~~~~l~--- 281 (549)
T 2z81_A 222 SSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPS-----------------ESDVVSELG--- 281 (549)
T ss_dssp CCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCC-----------------TTTCCCCCT---
T ss_pred hhcccceeccccccchhHHHHHHHHhhhhcccccccccccccccccccccc-----------------chhhhhhhc---
Confidence 678888888888877543322 123445566666665555433211000 000122233
Q ss_pred EEECcCCcCCCCCChhhhhhcCCcccEEeCCCCcccCCCCCCccccCCcccEEEeccCcccccCCCCCCCcceeeCcCCc
Q 047927 530 HLDLSDNQISGEIPNWLWKIGKDSFNHLNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIPPLPPNAAYVDYSGNN 609 (1005)
Q Consensus 530 ~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ls~n~ 609 (1005)
+++.++++++.+.....
T Consensus 282 ------------------------------------------------~L~~L~l~~~~i~~~~~--------------- 298 (549)
T 2z81_A 282 ------------------------------------------------KVETVTIRRLHIPQFYL--------------- 298 (549)
T ss_dssp ------------------------------------------------TCCEEEEESCBCSCGGG---------------
T ss_pred ------------------------------------------------ccccccccccccchhhh---------------
Confidence 34444444433321000
Q ss_pred CccCCCcchhcccCceEEEEecCCcccccCChhh-hccCCCCeEEccCccccccCCc---hhhhcCcccccEEECCCCcC
Q 047927 610 FTSSIPVDIGSFMSLSIFFSFSKNSLTGVIPESI-CNATNLLVLDLSYNYLSGMIPT---CLINMSDSQLGVLNLRRNNL 685 (1005)
Q Consensus 610 ~~~~~p~~~~~~~~~L~~L~l~~n~l~~~~p~~l-~~l~~L~~L~Ls~N~l~~~~p~---~~~~l~~~~L~~L~L~~n~l 685 (1005)
...++ .+......++.+++++|.+. .+|..+ ..+++|++|++++|++++.+|. .+..++ +|++|++++|++
T Consensus 299 -~~~l~-~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~--~L~~L~Ls~N~l 373 (549)
T 2z81_A 299 -FYDLS-TVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWP--SLQTLVLSQNHL 373 (549)
T ss_dssp -SCCCC-HHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSST--TCCEEECTTSCC
T ss_pred -cccch-hhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccc--cCcEEEccCCcc
Confidence 00000 11123455667777777765 556655 5799999999999999987653 366677 899999999999
Q ss_pred Ccccc--CccCCCCCccEEeCCCCeecccCcccccCCCCCCEEECCCCcCCCCcchhhhcCCCCcEEecCCCcCCcccCC
Q 047927 686 NGTVS--ATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISC 763 (1005)
Q Consensus 686 ~~~~~--~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~ 763 (1005)
++..+ ..+..+++|++|++++|+++ .+|..+..+++|++|++++|++++. |..+ .++|++|++++|++++.+
T Consensus 374 ~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~l-~~~~--~~~L~~L~Ls~N~l~~~~-- 447 (549)
T 2z81_A 374 RSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVV-KTCI--PQTLEVLDVSNNNLDSFS-- 447 (549)
T ss_dssp CCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSCC-CTTS--CTTCSEEECCSSCCSCCC--
T ss_pred cccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcccc-cchh--cCCceEEECCCCChhhhc--
Confidence 98754 56889999999999999999 6788999999999999999998753 3222 145666666666554321
Q ss_pred CCCCCCCCCccEEEccCCcccccCChHHHhhhhhhhhccCCchhhhchhhheecccccccccccEEEEEcchHHHHHHhc
Q 047927 764 PRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKIL 843 (1005)
Q Consensus 764 ~~~~~~l~~L~~L~ls~N~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 843 (1005)
.. +
T Consensus 448 ----~~-------------------------------------------------------------------------l 450 (549)
T 2z81_A 448 ----LF-------------------------------------------------------------------------L 450 (549)
T ss_dssp ----CC-------------------------------------------------------------------------C
T ss_pred ----cc-------------------------------------------------------------------------C
Confidence 12 3
Q ss_pred ccceEEECCCCeeeccCcccccCCCCCCEEECCCCcCcccCchhhhcCCCCCEEeCCCCcCcccCc
Q 047927 844 NIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIP 909 (1005)
Q Consensus 844 ~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~~~ip 909 (1005)
+.|+.|||++|+++ .+|+ .+.+++|++|||++|++++.+|..++++++|+.||+++|.+++..|
T Consensus 451 ~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 451 PRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp TTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred ChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 45566666666666 5665 4568888999999999998888888889999999999999988877
No 17
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=8.6e-44 Score=426.09 Aligned_cols=272 Identities=21% Similarity=0.319 Sum_probs=224.7
Q ss_pred CcccEEEeccCcccccCCCCCCCcceeeCcCCcCccCCCc--chhcccCceEEEEecCCcccccCChhhhccCCCCeEEc
Q 047927 577 TSLSVLDLHSNQIQGKIPPLPPNAAYVDYSGNNFTSSIPV--DIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVLDL 654 (1005)
Q Consensus 577 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~ls~n~~~~~~p~--~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L 654 (1005)
++|++|++++|+++ .+|. .+. .++.|++|++++|+++|.+| .+..+++|+.|++
T Consensus 305 ~~L~~L~L~~n~l~----------------------~ip~~~~l~-~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L 360 (636)
T 4eco_A 305 EKIQIIYIGYNNLK----------------------TFPVETSLQ-KMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNL 360 (636)
T ss_dssp GTCCEEECCSSCCS----------------------SCCCHHHHT-TCTTCCEEECCSCCCEEECC-CCEEEEEESEEEC
T ss_pred CCCCEEECCCCcCC----------------------ccCchhhhc-cCCCCCEEeCcCCcCccchh-hhCCCCCCCEEEC
Confidence 56666666666665 4444 333 47788999999999998888 8889999999999
Q ss_pred cCccccccCCchhhhcCccc-ccEEECCCCcCCccccCccCCCC--CccEEeCCCCeecccCccccc-------CCCCCC
Q 047927 655 SYNYLSGMIPTCLINMSDSQ-LGVLNLRRNNLNGTVSATFPANC--SLRTLDLNGNQLEGMVPKSLA-------NCSVLE 724 (1005)
Q Consensus 655 s~N~l~~~~p~~~~~l~~~~-L~~L~L~~n~l~~~~~~~~~~l~--~L~~L~L~~N~l~~~~p~~l~-------~l~~L~ 724 (1005)
++|+++ .+|..+..++ + |++|++++|+++ .+|..+.... +|++|++++|++++.+|..+. .+++|+
T Consensus 361 ~~N~l~-~lp~~l~~l~--~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~ 436 (636)
T 4eco_A 361 AYNQIT-EIPANFCGFT--EQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVS 436 (636)
T ss_dssp CSSEEE-ECCTTSEEEC--TTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEE
T ss_pred CCCccc-cccHhhhhhc--ccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCC
Confidence 999998 7888888887 7 999999999998 6677777654 899999999999998888888 788999
Q ss_pred EEECCCCcCCCCcchhhhcCCCCcEEecCCCcCCcccCCCCCCCC--------CCCccEEEccCCcccccCChHHHhhhh
Q 047927 725 ILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVS--------WPMLQIIDLASNKFSGRLPQKWLLNLE 796 (1005)
Q Consensus 725 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~--------l~~L~~L~ls~N~~~~~~p~~~~~~l~ 796 (1005)
+|++++|+++...+..+..+++|++|+|++|+++ .+ |..... +++|+.|++++|+++ .+|..+..
T Consensus 437 ~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i--~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~--- 509 (636)
T 4eco_A 437 SINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EI--PKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRA--- 509 (636)
T ss_dssp EEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BC--CSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGST---
T ss_pred EEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-Cc--CHHHhccccccccccCCccEEECcCCcCC-ccChhhhh---
Confidence 9999999999665566777999999999999998 44 554433 228999999999998 67743310
Q ss_pred hhhhccCCchhhhchhhheecccccccccccEEEEEcchHHHHHHhcccceEEECCCCeeeccCcccccCCCCCCEEEC-
Q 047927 797 AMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNL- 875 (1005)
Q Consensus 797 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~L- 875 (1005)
..+++|+.|+|++|++++ +|..++++++|++|+|
T Consensus 510 --------------------------------------------~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls 544 (636)
T 4eco_A 510 --------------------------------------------TTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIR 544 (636)
T ss_dssp --------------------------------------------TTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECC
T ss_pred --------------------------------------------ccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECC
Confidence 136788999999999998 8999999999999999
Q ss_pred -----CCCcCcccCchhhhcCCCCCEEeCCCCcCcccCcccccCCCCCCeEEccCCccccc
Q 047927 876 -----SHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLNLSYNHLVGR 931 (1005)
Q Consensus 876 -----s~N~l~g~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ 931 (1005)
++|++.+.+|..++++++|+.|||++|++ +.+|..+. ++|++||+++|++...
T Consensus 545 ~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~~~ 602 (636)
T 4eco_A 545 NQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNISI 602 (636)
T ss_dssp SCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTCEE
T ss_pred CCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCccc
Confidence 56889999999999999999999999999 68898876 7999999999988753
No 18
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=4.3e-41 Score=407.58 Aligned_cols=526 Identities=20% Similarity=0.144 Sum_probs=361.6
Q ss_pred CCccEEEccCCCCCCCCCccccCCCCCcEEECCCCCCCCCcchhccCCCCCcEEEccCCCCCccCccccCCCCCCCEEeC
Q 047927 189 PKLQVLSLSGCFLSGPVDPSLSNLRSLSVIRLDMNDLYSPVPEFLADFSNLTSLYLSSCGLHGAFPEKILQLPTLETLDL 268 (1005)
Q Consensus 189 ~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 268 (1005)
+++++|+|++|.+++..+.+|.++++|++|++++|.+.+..|.+|.++++|++|+|++|++++..+..|.++++|++|++
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence 67888899999988877788999999999999999988777778899999999999999998777778899999999999
Q ss_pred CCCCCCCCCCCcccCCCCCcEEEcccccccc-cCchhhccCCCCCEEeecCCccCCCCCccCCCCCC----CcEEECcCC
Q 047927 269 SYNELLQGSLPDFHQNLSLETLILSATNFSG-ILPDSIKNLKNLSRVEFYLCNFNGPIPTSMSDLSQ----LVYLDMSFN 343 (1005)
Q Consensus 269 s~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~----L~~L~L~~n 343 (1005)
++|.+.......|..+++|++|++++|.+++ ..|..++.+++|++|++++|.+.+..+..+..+.+ ...++++.|
T Consensus 132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n 211 (635)
T 4g8a_A 132 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 211 (635)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred CCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccC
Confidence 9998866555567888899999999998875 35778888899999999999888777776655443 346788888
Q ss_pred cCccCCCcccccCcccEEECCCCcCcCCCCcccccccccccEEEcCCCcCCC------ccCccCCCCCCCCEEeCcCccc
Q 047927 344 HFSGPIPSLHMFRNLAYLDLSYNIFTGGISSIGWEQLLNLFHVDLSHNNLGG------SIPQSLFELPMVQHLLLADNQF 417 (1005)
Q Consensus 344 ~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~------~~~~~l~~l~~L~~L~l~~n~l 417 (1005)
.+....+.......++.+++.+|.....+....+..+..++...+..+.... .....+.....+....+..+..
T Consensus 212 ~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~ 291 (635)
T 4g8a_A 212 PMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYL 291 (635)
T ss_dssp CCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECC
T ss_pred cccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhh
Confidence 8876666665556777888877765543433335566666655554332221 1111111122222222111110
Q ss_pred ccccccccccccccCCEEeCCCCccCCCCCccccCcCCCcEEECCCCcceeccchhHHHhcCCCCeEeccCCeeeEecCC
Q 047927 418 DGHVTEISNASSSLLDTLDLSDNNLEGPIPLSFFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRLAVVAGS 497 (1005)
Q Consensus 418 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~ 497 (1005)
. ......+..+..+.+++.+.+.++.+.. +. .+....+++.|++.+|.+..+...
T Consensus 292 ~----------------------~~~~~~~~~~~~~~~l~~l~~~~~~~~~-~~--~~~~~~~L~~L~l~~~~~~~~~~~ 346 (635)
T 4g8a_A 292 D----------------------YYLDGIIDLFNCLTNVSSFSLVSVTIER-VK--DFSYNFGWQHLELVNCKFGQFPTL 346 (635)
T ss_dssp C----------------------SCEEECTTTTGGGTTCSEEEEESCEEEE-CG--GGGSCCCCSEEEEESCEESSCCCC
T ss_pred c----------------------ccccchhhhhhhhccccccccccccccc-cc--ccccchhhhhhhcccccccCcCcc
Confidence 0 0011223345556777778877777653 22 355567777888877776655432
Q ss_pred cccccCcccceEEcCCccCcCCCCCCCCCceeEEECcCCcCCCCCChhhhhhcCCcccEEeCCCCcccCCCCCCccccCC
Q 047927 498 SVYCFPPLLTTLSLASCKLSAIPNLRKQTKLYHLDLSDNQISGEIPNWLWKIGKDSFNHLNLSHNLLVSLEQPYSISDLT 577 (1005)
Q Consensus 498 ~~~~~~~~L~~L~L~~n~l~~l~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~ 577 (1005)
....|+.+++..|.+...+....+++|+.++++.|.+....+.........+++.+++..|.+..... .+..++
T Consensus 347 ----~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~--~~~~l~ 420 (635)
T 4g8a_A 347 ----KLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSS--NFLGLE 420 (635)
T ss_dssp ----BCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECS--CCTTCT
T ss_pred ----cchhhhhcccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccc--cccccc
Confidence 23447777777777666666666777777787777765322111111223334444444443333211 122333
Q ss_pred cccEEEeccCcccccCCCCCCCcceeeCcCCcCccCCCcchhcccCceEEEEecCCcccccC-ChhhhccCCCCeEEccC
Q 047927 578 SLSVLDLHSNQIQGKIPPLPPNAAYVDYSGNNFTSSIPVDIGSFMSLSIFFSFSKNSLTGVI-PESICNATNLLVLDLSY 656 (1005)
Q Consensus 578 ~L~~L~l~~n~l~~~~~~~~~~l~~L~ls~n~~~~~~p~~~~~~~~~L~~L~l~~n~l~~~~-p~~l~~l~~L~~L~Ls~ 656 (1005)
+|+ .+++..+...... +..+..+++++.+++++
T Consensus 421 ~L~----------------------------------------------~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~ 454 (635)
T 4g8a_A 421 QLE----------------------------------------------HLDFQHSNLKQMSEFSVFLSLRNLIYLDISH 454 (635)
T ss_dssp TCC----------------------------------------------EEECTTSEEESTTSSCTTTTCTTCCEEECTT
T ss_pred ccc----------------------------------------------chhhhhccccccccccccccccccccccccc
Confidence 344 4444433333222 23466677788888888
Q ss_pred ccccccCCchhhhcCcccccEEECCCCcC-CccccCccCCCCCccEEeCCCCeecccCcccccCCCCCCEEECCCCcCCC
Q 047927 657 NYLSGMIPTCLINMSDSQLGVLNLRRNNL-NGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDD 735 (1005)
Q Consensus 657 N~l~~~~p~~~~~l~~~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 735 (1005)
|.+.+..+..+..++ +|+.|++++|++ .+..|..|..+++|++|+|++|++++..|..|.++++|++|+|++|++++
T Consensus 455 n~l~~~~~~~~~~~~--~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~ 532 (635)
T 4g8a_A 455 THTRVAFNGIFNGLS--SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS 532 (635)
T ss_dssp SCCEECCTTTTTTCT--TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCB
T ss_pred cccccccccccccch--hhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCC
Confidence 888877777777776 788888888874 44567788888888888888888888888888888888888888888888
Q ss_pred CcchhhhcCCCCcEEecCCCcCCcccCCCCCCCCC-CCccEEEccCCcccccCChHHHhhh
Q 047927 736 TFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSW-PMLQIIDLASNKFSGRLPQKWLLNL 795 (1005)
Q Consensus 736 ~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l-~~L~~L~ls~N~~~~~~p~~~~~~l 795 (1005)
..|..|+++++|++|+|++|++++.. |..+..+ ++|+.|++++|+|++.+...|+..|
T Consensus 533 l~~~~~~~l~~L~~L~Ls~N~l~~~~--~~~l~~l~~~L~~L~L~~Np~~C~C~~~~~~~w 591 (635)
T 4g8a_A 533 LDTFPYKCLNSLQVLDYSLNHIMTSK--KQELQHFPSSLAFLNLTQNDFACTCEHQSFLQW 591 (635)
T ss_dssp CCCGGGTTCTTCCEEECTTSCCCBCC--SSCTTCCCTTCCEEECTTCCBCCSGGGHHHHHH
T ss_pred CChhHHhCCCCCCEEECCCCcCCCCC--HHHHHhhhCcCCEEEeeCCCCcccCCcHHHHHH
Confidence 88888888888888999988888776 7777777 5899999999999998887777665
No 19
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=4.1e-42 Score=404.63 Aligned_cols=452 Identities=18% Similarity=0.175 Sum_probs=326.6
Q ss_pred CEEeCcCcccccccccccccccccCCEEeCCCCccCCCCCccccCcCCCcEEECCCCcceeccchhHHHhcCCCCeEecc
Q 047927 408 QHLLLADNQFDGHVTEISNASSSLLDTLDLSDNNLEGPIPLSFFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLS 487 (1005)
Q Consensus 408 ~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~ 487 (1005)
+++++++|.++.....+ .+++++|++++|.+++..|..|..+++|++|++++|+++ .+++..|..+++|++|+++
T Consensus 3 ~~l~ls~n~l~~ip~~~----~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls 77 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDL----SQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQ-YLDISVFKFNQELEYLDLS 77 (520)
T ss_dssp CEEECTTSCCSSCCCSC----CTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCC-EEEGGGGTTCTTCCEEECC
T ss_pred ceEecCCCCcccccccc----cccccEEECCCCcccccChhhccccccccEEecCCCccC-CcChHHhhcccCCCEEecC
Confidence 57888888887433222 277899999999988777778888999999999999887 4555678888999999999
Q ss_pred CCeeeEecCCcccccCcccceEEcCCccCcCC--CC-CCCCCceeEEECcCCcCCCCCChhhhhhcCCcc--cEEeCCCC
Q 047927 488 YNRLAVVAGSSVYCFPPLLTTLSLASCKLSAI--PN-LRKQTKLYHLDLSDNQISGEIPNWLWKIGKDSF--NHLNLSHN 562 (1005)
Q Consensus 488 ~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~l--~~-l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L--~~L~L~~n 562 (1005)
+|+++.++.. ..++|++|++++|+++.+ |. ++.+++|++|++++|.+.+. .+... ..+ +.|++++|
T Consensus 78 ~N~l~~lp~~----~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l--~~L~L~~L~l~~n 148 (520)
T 2z7x_B 78 HNKLVKISCH----PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS---SVLPI--AHLNISKVLLVLG 148 (520)
T ss_dssp SSCCCEEECC----CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGG---GGGGG--TTSCEEEEEEEEC
T ss_pred CCceeecCcc----ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccchh---hcccc--ccceeeEEEeecc
Confidence 9988887765 456688888888888763 44 77888888888888887642 22222 234 77777777
Q ss_pred cc--cCCCCCCccccCC-cccEEEeccCcccccCCCC----CCCcceeeCcCCc-------CccCCCcchhcccCceEEE
Q 047927 563 LL--VSLEQPYSISDLT-SLSVLDLHSNQIQGKIPPL----PPNAAYVDYSGNN-------FTSSIPVDIGSFMSLSIFF 628 (1005)
Q Consensus 563 ~l--~~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~----~~~l~~L~ls~n~-------~~~~~p~~~~~~~~~L~~L 628 (1005)
.+ ... .+..+..+. ....+++++|.+.+.++.. ..+++.+++++|. +.+.+| .+. .++.++.|
T Consensus 149 ~l~~~~~-~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~-~l~~L~~L 225 (520)
T 2z7x_B 149 ETYGEKE-DPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQ-TNPKLSNL 225 (520)
T ss_dssp TTTTSSC-CTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGG-GCTTCCEE
T ss_pred ccccccc-ccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhc-cccchhhc
Confidence 66 222 112222222 2334566666666655542 3456666666665 444443 222 35666777
Q ss_pred EecCCcccccCChhhh---ccCCCCeEEccCccccccCCchh-----hhcCcccccEEECCCCcCCcccc-CccCCC---
Q 047927 629 SFSKNSLTGVIPESIC---NATNLLVLDLSYNYLSGMIPTCL-----INMSDSQLGVLNLRRNNLNGTVS-ATFPAN--- 696 (1005)
Q Consensus 629 ~l~~n~l~~~~p~~l~---~l~~L~~L~Ls~N~l~~~~p~~~-----~~l~~~~L~~L~L~~n~l~~~~~-~~~~~l--- 696 (1005)
++++|.+++..+..+. ..++|+.|++++|+++|.+|..+ ..++ +|+.+++++|.+ .+| ..+..+
T Consensus 226 ~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~--~L~~l~l~~n~~--~~p~~~~~~~~~~ 301 (520)
T 2z7x_B 226 TLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLK--ALSIHQVVSDVF--GFPQSYIYEIFSN 301 (520)
T ss_dssp EEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCC--EEEEEEEEECCC--CSCTHHHHHHHHT
T ss_pred cccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCc--eeEeccccccce--ecchhhhhccccc
Confidence 7776666643322221 13567777777777777777766 6666 677777777777 233 233332
Q ss_pred CCccEEeCCCCeecccCcccccCCCCCCEEECCCCcCCCCcchhhhcCCCCcEEecCCCcCCcccCCCCCCCCCCCccEE
Q 047927 697 CSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQII 776 (1005)
Q Consensus 697 ~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L 776 (1005)
.+|++|++++|.+.... .+..+++|++|++++|++++..|.+++++++|++|++++|++.+....|..+..+++|++|
T Consensus 302 ~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L 379 (520)
T 2z7x_B 302 MNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQL 379 (520)
T ss_dssp CCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEE
T ss_pred CceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEE
Confidence 46788888888776432 1267889999999999999988999999999999999999998622225667888999999
Q ss_pred EccCCcccccCChHHHhhhhhhhhccCCchhhhchhhheecccccccccccEEEEEcchHHHHHHhcccceEEECCCCee
Q 047927 777 DLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNF 856 (1005)
Q Consensus 777 ~ls~N~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l 856 (1005)
|+++|++.+.+|...+ ..++.|+.|++++|++
T Consensus 380 ~Ls~N~l~~~l~~~~~------------------------------------------------~~l~~L~~L~Ls~N~l 411 (520)
T 2z7x_B 380 DISQNSVSYDEKKGDC------------------------------------------------SWTKSLLSLNMSSNIL 411 (520)
T ss_dssp ECCSSCCBCCGGGCSC------------------------------------------------CCCTTCCEEECCSSCC
T ss_pred ECCCCcCCcccccchh------------------------------------------------ccCccCCEEECcCCCC
Confidence 9999999876664211 1357889999999999
Q ss_pred eccCcccccCCCCCCEEECCCCcCcccCchhhhcCCCCCEEeCCCCcCcccCccc-ccCCCCCCeEEccCCcccccCCC
Q 047927 857 EGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQ-LASLNFLSVLNLSYNHLVGRIPT 934 (1005)
Q Consensus 857 ~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~~~ip~~-l~~l~~L~~L~ls~N~l~g~ip~ 934 (1005)
++.+|..+. ++|++|||++|+++ .+|..+..+++|+.|||++|++++ +|.. +..+++|++|++++|+++|.++.
T Consensus 412 ~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~c~~ 486 (520)
T 2z7x_B 412 TDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCPR 486 (520)
T ss_dssp CGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred Ccchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCc-cCHHHhccCCcccEEECcCCCCcccCCc
Confidence 999988775 79999999999999 899989999999999999999995 5554 99999999999999999998763
No 20
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.3e-41 Score=400.27 Aligned_cols=462 Identities=20% Similarity=0.170 Sum_probs=314.1
Q ss_pred cEEEccCCCCCCCCCccccCCCCCcEEECCCCCCCCCcchhccCCCCCcEEEccCCCCCccCccccCCCCCCCEEeCCCC
Q 047927 192 QVLSLSGCFLSGPVDPSLSNLRSLSVIRLDMNDLYSPVPEFLADFSNLTSLYLSSCGLHGAFPEKILQLPTLETLDLSYN 271 (1005)
Q Consensus 192 ~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n 271 (1005)
+++++++|.++. +|..+. ++|++|++++|.+.+..|..|.++++|++|++++|++++..|..++++++|++|++++|
T Consensus 3 ~~l~ls~n~l~~-ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 3 FLVDRSKNGLIH-VPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp CEEECTTSCCSS-CCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred ceEecCCCCccc-cccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence 467777777774 565555 78888888888888777778888888888888888888777888888888888888888
Q ss_pred CCCCCCCCcccCCCCCcEEEcccccccc-cCchhhccCCCCCEEeecCCccCCCCCccCCCCCCC--cEEECcCCcC--c
Q 047927 272 ELLQGSLPDFHQNLSLETLILSATNFSG-ILPDSIKNLKNLSRVEFYLCNFNGPIPTSMSDLSQL--VYLDMSFNHF--S 346 (1005)
Q Consensus 272 ~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L--~~L~L~~n~l--~ 346 (1005)
.+. .++.. .+++|++|++++|.+++ ..|..++++++|++|++++|.+.+ ..+..+++| ++|++++|.+ .
T Consensus 80 ~l~--~lp~~-~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~ 153 (520)
T 2z7x_B 80 KLV--KISCH-PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGE 153 (520)
T ss_dssp CCC--EEECC-CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTS
T ss_pred cee--ecCcc-ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeeccccccc
Confidence 775 34444 78888888888888887 467888888899999998888765 346666777 8899988888 5
Q ss_pred cCCCccc-ccC-cccEEECCCCcCcCCCCcccccccccccEEEcCCCc-------CCCccCccCCCCCCCCEEeCcCccc
Q 047927 347 GPIPSLH-MFR-NLAYLDLSYNIFTGGISSIGWEQLLNLFHVDLSHNN-------LGGSIPQSLFELPMVQHLLLADNQF 417 (1005)
Q Consensus 347 ~~~~~~~-~~~-~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~-------l~~~~~~~l~~l~~L~~L~l~~n~l 417 (1005)
+..+... .+. +...+++++|.+.+.++...+..+++|+.+++++|. +.+.++ .+..+++|+.|++.+|.+
T Consensus 154 ~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l 232 (520)
T 2z7x_B 154 KEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIET 232 (520)
T ss_dssp SCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEE
T ss_pred ccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhcccccccc
Confidence 4444322 222 344678888888887777778889999999999887 555554 678889999999988877
Q ss_pred cccccccc--ccccccCCEEeCCCCccCCCCCccc-----cCcCCCcEEECCCCcceeccchhHHHhc---CCCCeEecc
Q 047927 418 DGHVTEIS--NASSSLLDTLDLSDNNLEGPIPLSF-----FELKNLKILLLSSNKFVGTIELDAIQRL---RNLFRLDLS 487 (1005)
Q Consensus 418 ~~~~~~~~--~~~~~~L~~L~L~~n~l~~~~~~~l-----~~l~~L~~L~L~~n~l~~~~~~~~l~~l---~~L~~L~l~ 487 (1005)
.+...... ....++|++|++++|.+++.+|..+ ..+++|+.+++++|.+ .+|...+..+ .+|+.|+++
T Consensus 233 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~ 310 (520)
T 2z7x_B 233 TWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVS 310 (520)
T ss_dssp EHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEE
T ss_pred CHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcC
Confidence 64322111 1113478888888888887888777 7778888888888777 4553334333 334444444
Q ss_pred CCeeeEecCCcccccCcccceEEcCCccCcCCCCCCCCCceeEEECcCCcCCCCCChhhhhhcCCcccEEeCCCCcccCC
Q 047927 488 YNRLAVVAGSSVYCFPPLLTTLSLASCKLSAIPNLRKQTKLYHLDLSDNQISGEIPNWLWKIGKDSFNHLNLSHNLLVSL 567 (1005)
Q Consensus 488 ~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~l~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~L~~n~l~~~ 567 (1005)
+|.+.. ++....+++|++|++++|++++
T Consensus 311 ~n~l~~-------------------------~~~~~~l~~L~~L~Ls~n~l~~--------------------------- 338 (520)
T 2z7x_B 311 GTRMVH-------------------------MLCPSKISPFLHLDFSNNLLTD--------------------------- 338 (520)
T ss_dssp SSCCCC-------------------------CCCCSSCCCCCEEECCSSCCCT---------------------------
T ss_pred CCcccc-------------------------ccchhhCCcccEEEeECCccCh---------------------------
Confidence 433221 1111223333344444433332
Q ss_pred CCCCccccCCcccEEEeccCcccccCCCCCCCcceeeCcCCcCccCCCcchhcccCceEEEEecCCcccccCChhhhccC
Q 047927 568 EQPYSISDLTSLSVLDLHSNQIQGKIPPLPPNAAYVDYSGNNFTSSIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNAT 647 (1005)
Q Consensus 568 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ls~n~~~~~~p~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~ 647 (1005)
.+|..+..++
T Consensus 339 ----------------------------------------------------------------------~~~~~~~~l~ 348 (520)
T 2z7x_B 339 ----------------------------------------------------------------------TVFENCGHLT 348 (520)
T ss_dssp ----------------------------------------------------------------------TTTTTCCCCS
T ss_pred ----------------------------------------------------------------------hhhhhhccCC
Confidence 2233334444
Q ss_pred CCCeEEccCccccc--cCCchhhhcCcccccEEECCCCcCCcccc-CccCCCCCccEEeCCCCeecccCcccccCCCCCC
Q 047927 648 NLLVLDLSYNYLSG--MIPTCLINMSDSQLGVLNLRRNNLNGTVS-ATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLE 724 (1005)
Q Consensus 648 ~L~~L~Ls~N~l~~--~~p~~~~~l~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~ 724 (1005)
+|+.|++++|++++ .+|..+..++ +|++|++++|++++.+| ..+..+++|++|++++|++++..|..+. ++|+
T Consensus 349 ~L~~L~L~~N~l~~l~~~~~~~~~l~--~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~ 424 (520)
T 2z7x_B 349 ELETLILQMNQLKELSKIAEMTTQMK--SLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIK 424 (520)
T ss_dssp SCCEEECCSSCCCBHHHHHHHHTTCT--TCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCC
T ss_pred CCCEEEccCCccCccccchHHHhhCC--CCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCC
Confidence 55555555555543 3334455554 55555555555555233 3456666777777777777766666554 6788
Q ss_pred EEECCCCcCCCCcchhhhcCCCCcEEecCCCcCCcccCCCCC-CCCCCCccEEEccCCcccccCChHHH-hhh
Q 047927 725 ILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRY-NVSWPMLQIIDLASNKFSGRLPQKWL-LNL 795 (1005)
Q Consensus 725 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~-~~~l~~L~~L~ls~N~~~~~~p~~~~-~~l 795 (1005)
.|++++|+++ .+|.++..+++|++|++++|++++ + |.. +..+++|+.|++++|++++.++..|+ ..|
T Consensus 425 ~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l--~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~~~ 493 (520)
T 2z7x_B 425 VLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKS-V--PDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRW 493 (520)
T ss_dssp EEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-C--CTTTTTTCTTCCEEECCSSCBCCCHHHHHHHHHH
T ss_pred EEECCCCccc-ccchhhhcCCCCCEEECCCCcCCc-c--CHHHhccCCcccEEECcCCCCcccCCchHHHHHH
Confidence 8888888877 566666688888888888888774 3 443 77788899999999999988887666 444
No 21
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=1e-40 Score=404.20 Aligned_cols=543 Identities=22% Similarity=0.175 Sum_probs=351.4
Q ss_pred EEECCCCCCCCCcchhccCCCCCcEEEccCCCCCccCccccCCCCCCCEEeCCCCCCCCCCCCcccCCCCCcEEEccccc
Q 047927 217 VIRLDMNDLYSPVPEFLADFSNLTSLYLSSCGLHGAFPEKILQLPTLETLDLSYNELLQGSLPDFHQNLSLETLILSATN 296 (1005)
Q Consensus 217 ~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~L~~L~L~~n~ 296 (1005)
+.+.++-.+ ..+|..+. +++++|+|++|+|++..+.+|.++++|++|+|++|.+.......|.++++|++|+|++|+
T Consensus 35 ~~~c~~~~l-~~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~ 111 (635)
T 4g8a_A 35 TYQCMELNF-YKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 111 (635)
T ss_dssp EEECTTSCC-SSCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred EEECCCCCc-CccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCc
Confidence 344444444 34565543 478889999998887777788888888888888888766555567778888888888888
Q ss_pred ccccCchhhccCCCCCEEeecCCccCCCCCccCCCCCCCcEEECcCCcCccCCCcccccCcccEEECCCCcCcCCCCccc
Q 047927 297 FSGILPDSIKNLKNLSRVEFYLCNFNGPIPTSMSDLSQLVYLDMSFNHFSGPIPSLHMFRNLAYLDLSYNIFTGGISSIG 376 (1005)
Q Consensus 297 l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~ 376 (1005)
+++..+..|.++++|++|++++|.+.+..+..|+++++|++|++++|.+.+.. ++..
T Consensus 112 l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~----------------------~~~~- 168 (635)
T 4g8a_A 112 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK----------------------LPEY- 168 (635)
T ss_dssp CCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCC----------------------CCGG-
T ss_pred CCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCC----------------------Cchh-
Confidence 77776677777788888888877777666666777777777777777765421 1111
Q ss_pred ccccccccEEEcCCCcCCCccCccCCCCCCCCEEeCcCcccccccccccccccccCCEEeCCCCccCCCCCccccCcCCC
Q 047927 377 WEQLLNLFHVDLSHNNLGGSIPQSLFELPMVQHLLLADNQFDGHVTEISNASSSLLDTLDLSDNNLEGPIPLSFFELKNL 456 (1005)
Q Consensus 377 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L 456 (1005)
+..+++|++|++++|++++..+..+..+.+++. ....++++.|.+....+..+ ....+
T Consensus 169 ~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~---------------------~~~~~~ls~n~l~~i~~~~~-~~~~~ 226 (635)
T 4g8a_A 169 FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPL---------------------LNLSLDLSLNPMNFIQPGAF-KEIRL 226 (635)
T ss_dssp GGGCTTCCEEECCSSCCCEECGGGGHHHHTCTT---------------------CCCEEECTTCCCCEECTTTT-TTCEE
T ss_pred hccchhhhhhcccCccccccccccccchhhhhh---------------------hhhhhhcccCcccccCcccc-cchhh
Confidence 344445555555555544333333322221111 12234444444443333222 23345
Q ss_pred cEEECCCCcceeccchhHHHhcCCCCeEeccCCeeeEecCCcccccCcccceEEcCCccCcCCCCCCCCCceeEEECcCC
Q 047927 457 KILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRLAVVAGSSVYCFPPLLTTLSLASCKLSAIPNLRKQTKLYHLDLSDN 536 (1005)
Q Consensus 457 ~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~l~~l~~l~~L~~L~Ls~n 536 (1005)
+.+++.+|.....+....+..+..++...+..+........ +. .....+.....+...++..+
T Consensus 227 ~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l---------~~--------~~~~~~~~~~~l~~~~l~~~ 289 (635)
T 4g8a_A 227 HKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNL---------EK--------FDKSALEGLCNLTIEEFRLA 289 (635)
T ss_dssp EEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCC---------SC--------CCTTTTGGGGGSEEEEEEEE
T ss_pred hhhhhhcccccccccchhhcCCccccccccccccccccccc---------cc--------ccccccccccchhhhhhhhh
Confidence 66666666554445555666666666555433221100000 00 00000222223333333222
Q ss_pred cCCCCC---ChhhhhhcCCcccEEeCCCCcccCCCCCCccccCCcccEEEeccCcccccCCCCCCCcceeeCcCCcCccC
Q 047927 537 QISGEI---PNWLWKIGKDSFNHLNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIPPLPPNAAYVDYSGNNFTSS 613 (1005)
Q Consensus 537 ~l~~~~---p~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ls~n~~~~~ 613 (1005)
...... +..+. ....++.+++.++.+..+.. +.....++.|++.+|.+.+..+.
T Consensus 290 ~~~~~~~~~~~~~~--~~~~l~~l~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~~------------------ 346 (635)
T 4g8a_A 290 YLDYYLDGIIDLFN--CLTNVSSFSLVSVTIERVKD---FSYNFGWQHLELVNCKFGQFPTL------------------ 346 (635)
T ss_dssp CCCSCEEECTTTTG--GGTTCSEEEEESCEEEECGG---GGSCCCCSEEEEESCEESSCCCC------------------
T ss_pred hhcccccchhhhhh--hhcccccccccccccccccc---cccchhhhhhhcccccccCcCcc------------------
Confidence 221110 11111 11234444444444433221 22234566666666665533222
Q ss_pred CCcchhcccCceEEEEecCCcccccCChhhhccCCCCeEEccCccccc--cCCchhhhcCcccccEEECCCCcCCccccC
Q 047927 614 IPVDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSG--MIPTCLINMSDSQLGVLNLRRNNLNGTVSA 691 (1005)
Q Consensus 614 ~p~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~ 691 (1005)
.+..++.+++..|...... ....+++|+.|++++|.+.. ..+..+..+. +|+.+++..|.+... +.
T Consensus 347 -------~l~~L~~l~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~--~L~~L~~~~~~~~~~-~~ 414 (635)
T 4g8a_A 347 -------KLKSLKRLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTI--SLKYLDLSFNGVITM-SS 414 (635)
T ss_dssp -------BCTTCCEEEEESCCSCCBC--CCCBCTTCCEEECCSSCCBEEEECCHHHHSCS--CCCEEECCSCSEEEE-CS
T ss_pred -------cchhhhhcccccccCCCCc--ccccccccccchhhccccccccccccchhhhh--hhhhhhccccccccc-cc
Confidence 2344556666666655432 34467889999999988753 4555666665 899999999887754 45
Q ss_pred ccCCCCCccEEeCCCCeecccCc-ccccCCCCCCEEECCCCcCCCCcchhhhcCCCCcEEecCCCcCCcccCCCCCCCCC
Q 047927 692 TFPANCSLRTLDLNGNQLEGMVP-KSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSW 770 (1005)
Q Consensus 692 ~~~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l 770 (1005)
.+..+++|+.+++.+|+.....+ ..+..+++++.+++++|.+.+..|..+..+++|++|++++|++...+. |..+.
T Consensus 415 ~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~-~~~~~-- 491 (635)
T 4g8a_A 415 NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL-PDIFT-- 491 (635)
T ss_dssp CCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEE-CSCCT--
T ss_pred cccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccC-chhhh--
Confidence 67888999999999988876654 568889999999999999999999999999999999999987543220 22222
Q ss_pred CCccEEEccCCcccccCChHHHhhhhhhhhccCCchhhhchhhheecccccccccccEEEEEcchHHHHHHhcccceEEE
Q 047927 771 PMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSID 850 (1005)
Q Consensus 771 ~~L~~L~ls~N~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 850 (1005)
.+++|+.||
T Consensus 492 -----------------------------------------------------------------------~l~~L~~L~ 500 (635)
T 4g8a_A 492 -----------------------------------------------------------------------ELRNLTFLD 500 (635)
T ss_dssp -----------------------------------------------------------------------TCTTCCEEE
T ss_pred -----------------------------------------------------------------------hccccCEEE
Confidence 245567777
Q ss_pred CCCCeeeccCcccccCCCCCCEEECCCCcCcccCchhhhcCCCCCEEeCCCCcCcccCcccccCC-CCCCeEEccCCccc
Q 047927 851 FSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLASL-NFLSVLNLSYNHLV 929 (1005)
Q Consensus 851 Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l-~~L~~L~ls~N~l~ 929 (1005)
|++|++++.+|..|+++++|++|+|++|+|++..|..++++++|++|||++|+|++.+|..+..+ ++|++|++++|+++
T Consensus 501 Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~ 580 (635)
T 4g8a_A 501 LSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 580 (635)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBC
T ss_pred CCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCc
Confidence 88888888888999999999999999999999999999999999999999999999999999998 68999999999999
Q ss_pred ccCC
Q 047927 930 GRIP 933 (1005)
Q Consensus 930 g~ip 933 (1005)
|.+.
T Consensus 581 C~C~ 584 (635)
T 4g8a_A 581 CTCE 584 (635)
T ss_dssp CSGG
T ss_pred ccCC
Confidence 9764
No 22
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.5e-41 Score=411.56 Aligned_cols=391 Identities=21% Similarity=0.250 Sum_probs=234.5
Q ss_pred CcCCCccCccCCCCCCCCEEeCcCccccc-----------------cccccc-ccccccCCEEeCCCCccCCCCCccccC
Q 047927 391 NNLGGSIPQSLFELPMVQHLLLADNQFDG-----------------HVTEIS-NASSSLLDTLDLSDNNLEGPIPLSFFE 452 (1005)
Q Consensus 391 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~-----------------~~~~~~-~~~~~~L~~L~L~~n~l~~~~~~~l~~ 452 (1005)
|.+++ +|..+.++++|+.|++++|++++ .++... +..+++|++|++++|.+.+.+|..+.+
T Consensus 435 N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~ 513 (876)
T 4ecn_A 435 NRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYD 513 (876)
T ss_dssp CEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGG
T ss_pred Ccccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhC
Confidence 44443 45555555555555555555554 133222 234566777777777777888888888
Q ss_pred cCCCcEEECCCCc-cee-ccchhHHHhcC-------CCCeEeccCCeeeEecCCcccccCcccceEEcCCccCcCCCCCC
Q 047927 453 LKNLKILLLSSNK-FVG-TIELDAIQRLR-------NLFRLDLSYNRLAVVAGSSVYCFPPLLTTLSLASCKLSAIPNLR 523 (1005)
Q Consensus 453 l~~L~~L~L~~n~-l~~-~~~~~~l~~l~-------~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~l~~l~ 523 (1005)
+++|+.|++++|+ +++ .+|. .+..++ +|++|++++|.+..++........++|+.|++++|+++.+|.+.
T Consensus 514 L~~L~~L~Ls~N~~lsg~~iP~-~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp~~~ 592 (876)
T 4ecn_A 514 LPELQSLNIACNRGISAAQLKA-DWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEAFG 592 (876)
T ss_dssp CSSCCEEECTTCTTSCHHHHHH-HHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCCCCC
T ss_pred CCCCCEEECcCCCCcccccchH-HHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccchhhc
Confidence 9999999999987 776 5553 355554 88888888888775554112334456777777777777777777
Q ss_pred CCCceeEEECcCCcCCCCCChhhhhhcCCc-ccEEeCCCCcccCCCCCCccccCCcccEEEeccCcccccCCCCCCCcce
Q 047927 524 KQTKLYHLDLSDNQISGEIPNWLWKIGKDS-FNHLNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIPPLPPNAAY 602 (1005)
Q Consensus 524 ~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~~-L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 602 (1005)
.+++|++|++++|.+. .+|..+... .. |+.|++++|.+..++........++|+.|++++|++.+.+|..+
T Consensus 593 ~L~~L~~L~Ls~N~l~-~lp~~l~~l--~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~----- 664 (876)
T 4ecn_A 593 TNVKLTDLKLDYNQIE-EIPEDFCAF--TDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNIS----- 664 (876)
T ss_dssp TTSEESEEECCSSCCS-CCCTTSCEE--CTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCS-----
T ss_pred CCCcceEEECcCCccc-cchHHHhhc--cccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccch-----
Confidence 7778888888888777 666554332 23 44555555544433322111112224444444444443332111
Q ss_pred eeCcCCcCccCCCcchhcccCceEEEEecCCcccccCChhhh--ccCCCCeEEccCccccccCCchhh-hcCcccccEEE
Q 047927 603 VDYSGNNFTSSIPVDIGSFMSLSIFFSFSKNSLTGVIPESIC--NATNLLVLDLSYNYLSGMIPTCLI-NMSDSQLGVLN 679 (1005)
Q Consensus 603 L~ls~n~~~~~~p~~~~~~~~~L~~L~l~~n~l~~~~p~~l~--~l~~L~~L~Ls~N~l~~~~p~~~~-~l~~~~L~~L~ 679 (1005)
..+. .+++|+.|++++|+++ .+|..+. .++ +|+.|+
T Consensus 665 --------------------------------------~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~--~L~~L~ 703 (876)
T 4ecn_A 665 --------------------------------------CSMDDYKGINASTVTLSYNEIQ-KFPTELFATGS--PISTII 703 (876)
T ss_dssp --------------------------------------SCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTC--CCSEEE
T ss_pred --------------------------------------hhhccccCCCcCEEEccCCcCC-ccCHHHHccCC--CCCEEE
Confidence 0111 2235555666666555 3444433 344 555555
Q ss_pred CCCCcCCccccCccC-------CCCCccEEeCCCCeecccCccccc--CCCCCCEEECCCCcCCCCcchhhhcCCCCcEE
Q 047927 680 LRRNNLNGTVSATFP-------ANCSLRTLDLNGNQLEGMVPKSLA--NCSVLEILDLGNNQFDDTFPCWVKNASRLHVL 750 (1005)
Q Consensus 680 L~~n~l~~~~~~~~~-------~l~~L~~L~L~~N~l~~~~p~~l~--~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 750 (1005)
|++|+++...+..+. ++++|++|+|++|+++ .+|..+. .+++|+.|+|++|++++ +|.++..+++|+.|
T Consensus 704 Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L 781 (876)
T 4ecn_A 704 LSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAF 781 (876)
T ss_dssp CCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEE
T ss_pred CCCCcCCccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEE
Confidence 555555532222222 2235666666666665 4455554 55556666666655554 45455555555544
Q ss_pred ecCCCcCCcccCCCCCCCCCCCccEEEccCCcccccCChHHHhhhhhhhhccCCchhhhchhhheecccccccccccEEE
Q 047927 751 ILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITV 830 (1005)
Q Consensus 751 ~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 830 (1005)
+|++|+
T Consensus 782 ~Ls~N~-------------------------------------------------------------------------- 787 (876)
T 4ecn_A 782 GIRHQR-------------------------------------------------------------------------- 787 (876)
T ss_dssp ECCCCB--------------------------------------------------------------------------
T ss_pred ECCCCC--------------------------------------------------------------------------
Confidence 444442
Q ss_pred EEcchHHHHHHhcccceEEECCCCeeeccCcccccCCCCCCEEECCCCcCcccCchhhhcCCCCCEEeCCCCcCcccCcc
Q 047927 831 TIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPA 910 (1005)
Q Consensus 831 ~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~~~ip~ 910 (1005)
++++|++.+.+|..|+++++|+.|+|++|++ +.||..+. ++|+.|||++|++....+.
T Consensus 788 -------------------~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~ 845 (876)
T 4ecn_A 788 -------------------DAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVT 845 (876)
T ss_dssp -------------------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECG
T ss_pred -------------------CcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChH
Confidence 2456777778888888888999999999998 68888766 6889999999988877777
Q ss_pred cccCCCCCCeEEccCCcccc
Q 047927 911 QLASLNFLSVLNLSYNHLVG 930 (1005)
Q Consensus 911 ~l~~l~~L~~L~ls~N~l~g 930 (1005)
.+.....+..+.|++|++..
T Consensus 846 ~~~~~~~~~~~~L~~n~~~~ 865 (876)
T 4ecn_A 846 SVCPYIEAGMYVLLYDKTQD 865 (876)
T ss_dssp GGHHHHHTTCCEEECCTTSE
T ss_pred HccccccchheeecCCCccc
Confidence 77666667777888877653
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.5e-39 Score=385.80 Aligned_cols=435 Identities=17% Similarity=0.171 Sum_probs=293.8
Q ss_pred ccCCEEeCCCCccCCCCCccccCcCCCcEEECCCCcceeccchhHHHhcCCCCeEeccCCeeeEecCCcccccCcccceE
Q 047927 430 SLLDTLDLSDNNLEGPIPLSFFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRLAVVAGSSVYCFPPLLTTL 509 (1005)
Q Consensus 430 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L 509 (1005)
+++++|++++|.+++..+..|..+++|++|++++|+++ .+++..|.++++|++|++++|+++.++.. ..++|++|
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~----~l~~L~~L 126 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNRLQNISCC----PMASLRHL 126 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCC-EECTTTTTTCTTCCEEECTTSCCCEECSC----CCTTCSEE
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCC-cCCHHHhCCCCCCCEEECCCCcCCccCcc----ccccCCEE
Confidence 44666666666666666667778888888888888877 45556677788888888888887777654 35567777
Q ss_pred EcCCccCcCCC--C-CCCCCceeEEECcCCcCCCCCChhhhhhcCCcccEEeCCCCcc--cCCCCCCccccCC-cccEEE
Q 047927 510 SLASCKLSAIP--N-LRKQTKLYHLDLSDNQISGEIPNWLWKIGKDSFNHLNLSHNLL--VSLEQPYSISDLT-SLSVLD 583 (1005)
Q Consensus 510 ~L~~n~l~~l~--~-l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~L~~n~l--~~~~~~~~~~~l~-~L~~L~ 583 (1005)
++++|+++.++ . +..+++|++|++++|.+.+... .....-.|+.|++++|.+ .... +..+..+. ..-.++
T Consensus 127 ~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~---~~l~~L~L~~L~L~~n~l~~~~~~-~~~l~~l~~~~l~l~ 202 (562)
T 3a79_B 127 DLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDL---LPVAHLHLSCILLDLVSYHIKGGE-TESLQIPNTTVLHLV 202 (562)
T ss_dssp ECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTT---GGGTTSCEEEEEEEESSCCCCSSS-CCEEEECCEEEEEEE
T ss_pred ECCCCCccccCchHhhcccCcccEEecCCCccccCch---hhhhhceeeEEEeecccccccccC-cccccccCcceEEEE
Confidence 77777777654 2 7777788888888887764222 121111236666666655 3221 11222221 111345
Q ss_pred eccCcccccCCCC----CCCcceeeCcCCcC-----ccCCCcchhcccCceEEEEecCCcccccC----ChhhhccCCCC
Q 047927 584 LHSNQIQGKIPPL----PPNAAYVDYSGNNF-----TSSIPVDIGSFMSLSIFFSFSKNSLTGVI----PESICNATNLL 650 (1005)
Q Consensus 584 l~~n~l~~~~~~~----~~~l~~L~ls~n~~-----~~~~p~~~~~~~~~L~~L~l~~n~l~~~~----p~~l~~l~~L~ 650 (1005)
+++|.+.+.++.. ..+++.+++++|.. .+.+ .. ....+.++.+++.++.+.+.. +..+ ..++|+
T Consensus 203 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~-~~-l~~l~~L~~L~L~~~~l~~~~~~~~~~~~-~~~~L~ 279 (562)
T 3a79_B 203 FHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFL-SE-LTRGPTLLNVTLQHIETTWKCSVKLFQFF-WPRPVE 279 (562)
T ss_dssp ECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHH-HH-HHSCSSCEEEEEEEEEECHHHHHHHHHHH-TTSSEE
T ss_pred ecCccchhhhhhhcccccceEEEecccccccccchHHHHH-HH-HhccCcceEEEecCCcCcHHHHHHHHHhh-hccccc
Confidence 5556555544321 22445555555431 1100 01 112344455555544443211 1111 223677
Q ss_pred eEEccCccccccCCchh-----hhcCcccccEEECCCCcCCcccc-CccCC---CCCccEEeCCCCeecccCcccccCCC
Q 047927 651 VLDLSYNYLSGMIPTCL-----INMSDSQLGVLNLRRNNLNGTVS-ATFPA---NCSLRTLDLNGNQLEGMVPKSLANCS 721 (1005)
Q Consensus 651 ~L~Ls~N~l~~~~p~~~-----~~l~~~~L~~L~L~~n~l~~~~~-~~~~~---l~~L~~L~L~~N~l~~~~p~~l~~l~ 721 (1005)
+|++++|.++|.+|..+ ..+. .|+.++++.|.+ .+| ..+.. ..+|++|++++|.+.... ....++
T Consensus 280 ~L~l~~n~l~~~ip~~~~~~~~~~L~--~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~ 353 (562)
T 3a79_B 280 YLNIYNLTITERIDREEFTYSETALK--SLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPS 353 (562)
T ss_dssp EEEEEEEEECSCCCCCCCCCCSCSCC--EEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCC
T ss_pred EEEEeccEeeccccchhhhcccccch--heehhhccccee--ecChhhhhhhhccCcceEEEccCCCccccc--CccCCC
Confidence 77777777776666665 3343 444444455544 122 11111 146888999998886432 127889
Q ss_pred CCCEEECCCCcCCCCcchhhhcCCCCcEEecCCCcCCcccCCCCCCCCCCCccEEEccCCcccccCChHHHhhhhhhhhc
Q 047927 722 VLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVD 801 (1005)
Q Consensus 722 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~~~~~~p~~~~~~l~~~~~~ 801 (1005)
+|++|++++|++++..|.+++++++|++|++++|++++....|..+..+++|+.|++++|++++.+|...+
T Consensus 354 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~--------- 424 (562)
T 3a79_B 354 SFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTC--------- 424 (562)
T ss_dssp CCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCC---------
T ss_pred CceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhh---------
Confidence 99999999999999999999999999999999999987332256788999999999999999987774321
Q ss_pred cCCchhhhchhhheecccccccccccEEEEEcchHHHHHHhcccceEEECCCCeeeccCcccccCCCCCCEEECCCCcCc
Q 047927 802 EGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALT 881 (1005)
Q Consensus 802 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~ 881 (1005)
..++.|+.|++++|++++.+|..+. ++|++|+|++|+++
T Consensus 425 ---------------------------------------~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~ 463 (562)
T 3a79_B 425 ---------------------------------------AWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM 463 (562)
T ss_dssp ---------------------------------------CCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC
T ss_pred ---------------------------------------cCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc
Confidence 1357899999999999999888765 79999999999999
Q ss_pred ccCchhhhcCCCCCEEeCCCCcCcccCccc-ccCCCCCCeEEccCCcccccCCC
Q 047927 882 GSIPSLIGNLREIESLDLSMNNLSGTIPAQ-LASLNFLSVLNLSYNHLVGRIPT 934 (1005)
Q Consensus 882 g~ip~~~~~l~~L~~LdLs~N~l~~~ip~~-l~~l~~L~~L~ls~N~l~g~ip~ 934 (1005)
.||..+.++++|+.|||++|++++ +|.. +..+++|++|++++|+++|.+|.
T Consensus 464 -~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~c~~ 515 (562)
T 3a79_B 464 -SIPKDVTHLQALQELNVASNQLKS-VPDGVFDRLTSLQYIWLHDNPWDCTCPG 515 (562)
T ss_dssp -CCCTTTTSSCCCSEEECCSSCCCC-CCTTSTTTCTTCCCEECCSCCBCCCHHH
T ss_pred -ccChhhcCCCCCCEEECCCCCCCC-CCHHHHhcCCCCCEEEecCCCcCCCcch
Confidence 799989999999999999999995 5655 99999999999999999998874
No 24
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.9e-38 Score=376.33 Aligned_cols=463 Identities=20% Similarity=0.170 Sum_probs=298.1
Q ss_pred CCccEEEccCCCCCCCCCccccCCCCCcEEECCCCCCCCCcchhccCCCCCcEEEccCCCCCccCccccCCCCCCCEEeC
Q 047927 189 PKLQVLSLSGCFLSGPVDPSLSNLRSLSVIRLDMNDLYSPVPEFLADFSNLTSLYLSSCGLHGAFPEKILQLPTLETLDL 268 (1005)
Q Consensus 189 ~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 268 (1005)
...+++++++|.+++ +|..+. ++|++|++++|.+.+..|..|.++++|++|++++|.+++..|..+..+++|++|++
T Consensus 31 ~~~~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 107 (562)
T 3a79_B 31 ELESMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDV 107 (562)
T ss_dssp --CCEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEEC
Confidence 344788888888886 555554 78899999999988877788889999999999999998887888889999999999
Q ss_pred CCCCCCCCCCCcccCCCCCcEEEccccccccc-CchhhccCCCCCEEeecCCccCCCCCccCCCCCCC--cEEECcCCcC
Q 047927 269 SYNELLQGSLPDFHQNLSLETLILSATNFSGI-LPDSIKNLKNLSRVEFYLCNFNGPIPTSMSDLSQL--VYLDMSFNHF 345 (1005)
Q Consensus 269 s~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L--~~L~L~~n~l 345 (1005)
++|.+.. ++.. .+++|++|++++|.+++. .|..|+++++|++|++++|.+.+. .+..+++| ++|++++|.+
T Consensus 108 s~N~l~~--lp~~-~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 108 SHNRLQN--ISCC-PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp TTSCCCE--ECSC-CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSC
T ss_pred CCCcCCc--cCcc-ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccc
Confidence 9998753 4444 788999999999998874 468899999999999999988763 34445555 9999999988
Q ss_pred --ccCCCccccc-C-cccEEECCCCcCcCCCCcccccccccccEEEcCCCcCC----CccCccCCCCCCCCEEeCcCccc
Q 047927 346 --SGPIPSLHMF-R-NLAYLDLSYNIFTGGISSIGWEQLLNLFHVDLSHNNLG----GSIPQSLFELPMVQHLLLADNQF 417 (1005)
Q Consensus 346 --~~~~~~~~~~-~-~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~----~~~~~~l~~l~~L~~L~l~~n~l 417 (1005)
.+..+..... . ..-.++++.|.+.+.++...+..+++|+.+++++|... ......+..++.++.+++.++.+
T Consensus 182 ~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l 261 (562)
T 3a79_B 182 HIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIET 261 (562)
T ss_dssp CCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEE
T ss_pred cccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcC
Confidence 6655543322 2 22356788888888777777888999999999988521 01223456778888888887766
Q ss_pred ccccccc--cccccccCCEEeCCCCccCCCCCccc-----cCcCCCcEEECCCCcceeccchhHHHhc---CCCCeEecc
Q 047927 418 DGHVTEI--SNASSSLLDTLDLSDNNLEGPIPLSF-----FELKNLKILLLSSNKFVGTIELDAIQRL---RNLFRLDLS 487 (1005)
Q Consensus 418 ~~~~~~~--~~~~~~~L~~L~L~~n~l~~~~~~~l-----~~l~~L~~L~L~~n~l~~~~~~~~l~~l---~~L~~L~l~ 487 (1005)
.+..... .....++|++|++++|.+++.+|..+ ..++.|+.+++..+.+ .+|...+..+ .+|++|+++
T Consensus 262 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~ 339 (562)
T 3a79_B 262 TWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSIS 339 (562)
T ss_dssp CHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEE
T ss_pred cHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEcc
Confidence 5322111 01112367888888888877777766 5555555555555554 3343322221 223333333
Q ss_pred CCeeeEecCCcccccCcccceEEcCCccCcCCCCCCCCCceeEEECcCCcCCCCCChhhhhhcCCcccEEeCCCCcccCC
Q 047927 488 YNRLAVVAGSSVYCFPPLLTTLSLASCKLSAIPNLRKQTKLYHLDLSDNQISGEIPNWLWKIGKDSFNHLNLSHNLLVSL 567 (1005)
Q Consensus 488 ~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~l~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~L~~n~l~~~ 567 (1005)
+|.+ ..++....+++|++|++++|.+++
T Consensus 340 ~n~~-------------------------~~~~~~~~l~~L~~L~l~~n~l~~--------------------------- 367 (562)
T 3a79_B 340 DTPF-------------------------IHMVCPPSPSSFTFLNFTQNVFTD--------------------------- 367 (562)
T ss_dssp SSCC-------------------------CCCCCCSSCCCCCEEECCSSCCCT---------------------------
T ss_pred CCCc-------------------------ccccCccCCCCceEEECCCCcccc---------------------------
Confidence 3222 111111223333333333333332
Q ss_pred CCCCccccCCcccEEEeccCcccccCCCCCCCcceeeCcCCcCccCCCcchhcccCceEEEEecCCcccccCChhhhccC
Q 047927 568 EQPYSISDLTSLSVLDLHSNQIQGKIPPLPPNAAYVDYSGNNFTSSIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNAT 647 (1005)
Q Consensus 568 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ls~n~~~~~~p~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~ 647 (1005)
.+|..+..++
T Consensus 368 ----------------------------------------------------------------------~~~~~~~~l~ 377 (562)
T 3a79_B 368 ----------------------------------------------------------------------SVFQGCSTLK 377 (562)
T ss_dssp ----------------------------------------------------------------------TTTTTCCSCS
T ss_pred ----------------------------------------------------------------------chhhhhcccC
Confidence 2233334444
Q ss_pred CCCeEEccCccccc--cCCchhhhcCcccccEEECCCCcCCc-cccCccCCCCCccEEeCCCCeecccCcccccCCCCCC
Q 047927 648 NLLVLDLSYNYLSG--MIPTCLINMSDSQLGVLNLRRNNLNG-TVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLE 724 (1005)
Q Consensus 648 ~L~~L~Ls~N~l~~--~~p~~~~~l~~~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~ 724 (1005)
+|+.|++++|++++ .+|..+..++ +|++|++++|++++ ..+..+..+++|++|++++|++++..|..+. ++|+
T Consensus 378 ~L~~L~L~~N~l~~~~~~~~~~~~l~--~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~ 453 (562)
T 3a79_B 378 RLQTLILQRNGLKNFFKVALMTKNMS--SLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVK 453 (562)
T ss_dssp SCCEEECCSSCCCBTTHHHHTTTTCT--TCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCS
T ss_pred CCCEEECCCCCcCCcccchhhhcCCC--CCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCC
Confidence 45555555555443 1223344444 55555555555555 2223455666666677777766665555443 5677
Q ss_pred EEECCCCcCCCCcchhhhcCCCCcEEecCCCcCCcccCCCCC-CCCCCCccEEEccCCcccccCChHHH
Q 047927 725 ILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRY-NVSWPMLQIIDLASNKFSGRLPQKWL 792 (1005)
Q Consensus 725 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~-~~~l~~L~~L~ls~N~~~~~~p~~~~ 792 (1005)
+|++++|+++ .+|.++..+++|++|+|++|++++ + |.. +..+++|+.|++++|++.|.+|..++
T Consensus 454 ~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l--~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~ 518 (562)
T 3a79_B 454 VLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKS-V--PDGVFDRLTSLQYIWLHDNPWDCTCPGIRY 518 (562)
T ss_dssp EEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCC-C--CTTSTTTCTTCCCEECCSCCBCCCHHHHHH
T ss_pred EEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCC-C--CHHHHhcCCCCCEEEecCCCcCCCcchHHH
Confidence 7777777776 455555577777777777777763 2 443 67788888888888888888887665
No 25
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=2.4e-38 Score=361.66 Aligned_cols=304 Identities=21% Similarity=0.237 Sum_probs=187.6
Q ss_pred cccCcccEEECCCCcCcCCCCcccccccccccEEEcCCCcCCCccCccCCCCCCCCEEeCcCcccccccccccccccccC
Q 047927 353 HMFRNLAYLDLSYNIFTGGISSIGWEQLLNLFHVDLSHNNLGGSIPQSLFELPMVQHLLLADNQFDGHVTEISNASSSLL 432 (1005)
Q Consensus 353 ~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L 432 (1005)
.....|++|++++|.+ +.+|.. ++++++|++|++++|.+.+.+|..++.+.+|+.+++.+|. ...+
T Consensus 8 ~~~~~L~~L~l~~n~l-~~iP~~-i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~------------~~~l 73 (454)
T 1jl5_A 8 VSNTFLQEPLRHSSNL-TEMPVE-AENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCL------------DRQA 73 (454)
T ss_dssp ----------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHH------------HHTC
T ss_pred cccccchhhhcccCch-hhCChh-HhcccchhhhhccCCcccccCCcccccchhcchhhhhhhh------------ccCC
Confidence 3445777777777777 577766 7888899999999988888888888888887777666653 2457
Q ss_pred CEEeCCCCccCCCCCccccCcCCCcEEECCCCcceeccchhHHHhcCCCCeEeccCCeeeEecCCcccccCcccceEEcC
Q 047927 433 DTLDLSDNNLEGPIPLSFFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRLAVVAGSSVYCFPPLLTTLSLA 512 (1005)
Q Consensus 433 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~ 512 (1005)
++|++++|.+++ +|.. .++|+.|++++|.+++ ++. .+++|++|++++|+++.++. .++.|++|+++
T Consensus 74 ~~L~l~~~~l~~-lp~~---~~~L~~L~l~~n~l~~-lp~----~~~~L~~L~l~~n~l~~l~~-----~~~~L~~L~L~ 139 (454)
T 1jl5_A 74 HELELNNLGLSS-LPEL---PPHLESLVASCNSLTE-LPE----LPQSLKSLLVDNNNLKALSD-----LPPLLEYLGVS 139 (454)
T ss_dssp SEEECTTSCCSC-CCSC---CTTCSEEECCSSCCSS-CCC----CCTTCCEEECCSSCCSCCCS-----CCTTCCEEECC
T ss_pred CEEEecCCcccc-CCCC---cCCCCEEEccCCcCCc-ccc----ccCCCcEEECCCCccCcccC-----CCCCCCEEECc
Confidence 888888888875 3331 3688899999988874 553 24788888888888876543 34679999999
Q ss_pred CccCcCCCCCCCCCceeEEECcCCcCCCCCChhhhhhcCCcccEEeCCCCcccCCCCCCccccCCcccEEEeccCccccc
Q 047927 513 SCKLSAIPNLRKQTKLYHLDLSDNQISGEIPNWLWKIGKDSFNHLNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQGK 592 (1005)
Q Consensus 513 ~n~l~~l~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 592 (1005)
+|+++.+|.+..+++|++|++++|++++ +|... .+|++|++++|++..++ .+..+++|++|++++|.+++
T Consensus 140 ~n~l~~lp~~~~l~~L~~L~l~~N~l~~-lp~~~-----~~L~~L~L~~n~l~~l~---~~~~l~~L~~L~l~~N~l~~- 209 (454)
T 1jl5_A 140 NNQLEKLPELQNSSFLKIIDVDNNSLKK-LPDLP-----PSLEFIAAGNNQLEELP---ELQNLPFLTAIYADNNSLKK- 209 (454)
T ss_dssp SSCCSSCCCCTTCTTCCEEECCSSCCSC-CCCCC-----TTCCEEECCSSCCSSCC---CCTTCTTCCEEECCSSCCSS-
T ss_pred CCCCCCCcccCCCCCCCEEECCCCcCcc-cCCCc-----ccccEEECcCCcCCcCc---cccCCCCCCEEECCCCcCCc-
Confidence 9999999889999999999999999885 55432 36888888888887764 36677788888888877764
Q ss_pred CCCCCCCcceeeCcCCcCccCCCcchhcccCceEEEEecCCcccccCChhhhccCCCCeEEccCccccccCCchhhhcCc
Q 047927 593 IPPLPPNAAYVDYSGNNFTSSIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSD 672 (1005)
Q Consensus 593 ~~~~~~~l~~L~ls~n~~~~~~p~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 672 (1005)
+|..+ ..|++|++++|.++ .+| .+..+++|+.|++++|++++ +|... .
T Consensus 210 l~~~~-------------------------~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~~~---~- 257 (454)
T 1jl5_A 210 LPDLP-------------------------LSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPDLP---P- 257 (454)
T ss_dssp CCCCC-------------------------TTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCSCC---T-
T ss_pred CCCCc-------------------------CcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-ccccc---c-
Confidence 33221 24445555555554 344 25666667777777776663 33321 2
Q ss_pred ccccEEECCCCcCCccccCccCCCCCccEEeCCCCeecccCcccccCCCCCCEEECCCCcCCC
Q 047927 673 SQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDD 735 (1005)
Q Consensus 673 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 735 (1005)
+|+.|++++|++++. |.. .++|++|++++|++++. |.. .++|++|++++|++++
T Consensus 258 -~L~~L~l~~N~l~~l-~~~---~~~L~~L~ls~N~l~~l-~~~---~~~L~~L~l~~N~l~~ 311 (454)
T 1jl5_A 258 -SLEALNVRDNYLTDL-PEL---PQSLTFLDVSENIFSGL-SEL---PPNLYYLNASSNEIRS 311 (454)
T ss_dssp -TCCEEECCSSCCSCC-CCC---CTTCCEEECCSSCCSEE-SCC---CTTCCEEECCSSCCSE
T ss_pred -ccCEEECCCCccccc-Ccc---cCcCCEEECcCCccCcc-cCc---CCcCCEEECcCCcCCc
Confidence 566666666666652 222 24556666666665542 110 1455555555555543
No 26
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=7.9e-38 Score=357.34 Aligned_cols=378 Identities=22% Similarity=0.313 Sum_probs=192.3
Q ss_pred ccCCEEeCCCCccCCCCCccccCcCCCcEEECCCCcceeccchhHHHhcC-------------CCCeEeccCCeeeEecC
Q 047927 430 SLLDTLDLSDNNLEGPIPLSFFELKNLKILLLSSNKFVGTIELDAIQRLR-------------NLFRLDLSYNRLAVVAG 496 (1005)
Q Consensus 430 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~-------------~L~~L~l~~n~l~~~~~ 496 (1005)
..|++|++++|.+ +.+|..++++++|++|++++|.+.|.+|. .+..++ ++++|++++|.++.++.
T Consensus 11 ~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~-~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~ 88 (454)
T 1jl5_A 11 TFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPP-GNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPE 88 (454)
T ss_dssp ------------------------CCHHHHHHHHHHHHHTSCT-TSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCS
T ss_pred ccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCc-ccccchhcchhhhhhhhccCCCEEEecCCccccCCC
Confidence 3456666666666 46666677777777777777776655543 233333 45777777777666543
Q ss_pred CcccccCcccceEEcCCccCcCCCCCCCCCceeEEECcCCcCCCCCChhhhhhcCCcccEEeCCCCcccCCCCCCccccC
Q 047927 497 SSVYCFPPLLTTLSLASCKLSAIPNLRKQTKLYHLDLSDNQISGEIPNWLWKIGKDSFNHLNLSHNLLVSLEQPYSISDL 576 (1005)
Q Consensus 497 ~~~~~~~~~L~~L~L~~n~l~~l~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l 576 (1005)
.++.|++|++++|.++.+|.. .++|++|++++|++++ +|.. ...+++|++++|++..++ .+..+
T Consensus 89 -----~~~~L~~L~l~~n~l~~lp~~--~~~L~~L~l~~n~l~~-l~~~-----~~~L~~L~L~~n~l~~lp---~~~~l 152 (454)
T 1jl5_A 89 -----LPPHLESLVASCNSLTELPEL--PQSLKSLLVDNNNLKA-LSDL-----PPLLEYLGVSNNQLEKLP---ELQNS 152 (454)
T ss_dssp -----CCTTCSEEECCSSCCSSCCCC--CTTCCEEECCSSCCSC-CCSC-----CTTCCEEECCSSCCSSCC---CCTTC
T ss_pred -----CcCCCCEEEccCCcCCccccc--cCCCcEEECCCCccCc-ccCC-----CCCCCEEECcCCCCCCCc---ccCCC
Confidence 345677777777777776652 3677777777777764 2221 145777777777777654 36667
Q ss_pred CcccEEEeccCcccccCCCCCCCcceeeCcCCcCccCCCcchhcccCceEEEEecCCcccccCChhhhccCCCCeEEccC
Q 047927 577 TSLSVLDLHSNQIQGKIPPLPPNAAYVDYSGNNFTSSIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVLDLSY 656 (1005)
Q Consensus 577 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~ls~n~~~~~~p~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~ 656 (1005)
++|++|++++|++++ +|..+.+ |++|++++|.+++ +| .++.+++|+.|++++
T Consensus 153 ~~L~~L~l~~N~l~~-lp~~~~~-------------------------L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~ 204 (454)
T 1jl5_A 153 SFLKIIDVDNNSLKK-LPDLPPS-------------------------LEFIAAGNNQLEE-LP-ELQNLPFLTAIYADN 204 (454)
T ss_dssp TTCCEEECCSSCCSC-CCCCCTT-------------------------CCEEECCSSCCSS-CC-CCTTCTTCCEEECCS
T ss_pred CCCCEEECCCCcCcc-cCCCccc-------------------------ccEEECcCCcCCc-Cc-cccCCCCCCEEECCC
Confidence 777777777777664 4444344 4555555555554 33 355566666666666
Q ss_pred ccccccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCccEEeCCCCeecccCcccccCCCCCCEEECCCCcCCCC
Q 047927 657 NYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDT 736 (1005)
Q Consensus 657 N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 736 (1005)
|++++ +|... . +|++|++++|+++ .+| .+..+++|++|++++|++++ +|.. .++|+.|++++|++++
T Consensus 205 N~l~~-l~~~~---~--~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~- 271 (454)
T 1jl5_A 205 NSLKK-LPDLP---L--SLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD- 271 (454)
T ss_dssp SCCSS-CCCCC---T--TCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-
T ss_pred CcCCc-CCCCc---C--cccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-
Confidence 66653 33221 1 5666666666665 333 25566666666666666664 3322 2566666666666665
Q ss_pred cchhhhcCCCCcEEecCCCcCCcccCCCCCCCCCCCccEEEccCCcccccCChHHHhhhhhhhhccCCchhhhchhhhee
Q 047927 737 FPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRF 816 (1005)
Q Consensus 737 ~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 816 (1005)
+|.. .++|++|++++|++++. |.. .++|+.|++++|++++. |.
T Consensus 272 l~~~---~~~L~~L~ls~N~l~~l---~~~---~~~L~~L~l~~N~l~~i-~~--------------------------- 314 (454)
T 1jl5_A 272 LPEL---PQSLTFLDVSENIFSGL---SEL---PPNLYYLNASSNEIRSL-CD--------------------------- 314 (454)
T ss_dssp CCCC---CTTCCEEECCSSCCSEE---SCC---CTTCCEEECCSSCCSEE-CC---------------------------
T ss_pred cCcc---cCcCCEEECcCCccCcc---cCc---CCcCCEEECcCCcCCcc-cC---------------------------
Confidence 3332 25566666666666542 110 14566666666665531 10
Q ss_pred cccccccccccEEEEEcchHHHHHHhcccceEEECCCCeeeccCcccccCCCCCCEEECCCCcCcccCchhhhcCCCCCE
Q 047927 817 LNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIES 896 (1005)
Q Consensus 817 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~ 896 (1005)
..+.|+.|++++|++++ +|.. +++|++|++++|+++ .+|. .+++|++
T Consensus 315 -------------------------~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~ 361 (454)
T 1jl5_A 315 -------------------------LPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQ 361 (454)
T ss_dssp -------------------------CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCE
T ss_pred -------------------------CcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhhhccE
Confidence 01245666666666664 4543 356666666666666 3554 3566666
Q ss_pred EeCCCCcCcc--cCcccccCC-------------CCCCeEEccCCcccc--cCCCCC
Q 047927 897 LDLSMNNLSG--TIPAQLASL-------------NFLSVLNLSYNHLVG--RIPTST 936 (1005)
Q Consensus 897 LdLs~N~l~~--~ip~~l~~l-------------~~L~~L~ls~N~l~g--~ip~~~ 936 (1005)
||+++|++++ .+|.++.+| ++|++||+++|+++| .||...
T Consensus 362 L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~sl 418 (454)
T 1jl5_A 362 LHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPESV 418 (454)
T ss_dssp EECCSSCCSSCCCCCTTCCEEECCC--------------------------------
T ss_pred EECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccchhhH
Confidence 6666666666 566666555 789999999999998 888654
No 27
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=3.8e-37 Score=356.04 Aligned_cols=374 Identities=19% Similarity=0.186 Sum_probs=282.1
Q ss_pred eEeccCCeeeEecCCcccccCcccceEEcCCccCcCCCC--CCCCCceeEEECcCCcCCCCCChhhhhhcCCcccEEeCC
Q 047927 483 RLDLSYNRLAVVAGSSVYCFPPLLTTLSLASCKLSAIPN--LRKQTKLYHLDLSDNQISGEIPNWLWKIGKDSFNHLNLS 560 (1005)
Q Consensus 483 ~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~l~~--l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~L~ 560 (1005)
.++.++++++.++. .++.|++|++++|.++.++. +..+++|++|++++|.+.+.++
T Consensus 14 ~~~c~~~~l~~lp~-----l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~----------------- 71 (455)
T 3v47_A 14 NAICINRGLHQVPE-----LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIR----------------- 71 (455)
T ss_dssp EEECCSSCCSSCCC-----CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEEC-----------------
T ss_pred ccCcCCCCcccCCC-----CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceEC-----------------
Confidence 34444444444442 23445555555555554422 5555555555555555543332
Q ss_pred CCcccCCCCCCccccCCcccEEEeccCcccccCCCC---CCCcceeeCcCCcCccCCCcc-hhcccCceEEEEecCCccc
Q 047927 561 HNLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIPPL---PPNAAYVDYSGNNFTSSIPVD-IGSFMSLSIFFSFSKNSLT 636 (1005)
Q Consensus 561 ~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~---~~~l~~L~ls~n~~~~~~p~~-~~~~~~~L~~L~l~~n~l~ 636 (1005)
+..+..+++|++|++++|++++..|.. ..++++|++++|++++.+|.. ....++.|++|++++|.++
T Consensus 72 ---------~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~ 142 (455)
T 3v47_A 72 ---------NNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIK 142 (455)
T ss_dssp ---------TTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCC
T ss_pred ---------cccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccC
Confidence 223444555555555555555544432 235555556666555433332 2335788999999999999
Q ss_pred ccCChh-hhccCCCCeEEccCccccccCCchhhhcCcccccEEECCCCcCCccccCcc--------CCCCCccEEeCCCC
Q 047927 637 GVIPES-ICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATF--------PANCSLRTLDLNGN 707 (1005)
Q Consensus 637 ~~~p~~-l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~--------~~l~~L~~L~L~~N 707 (1005)
+..|.. +..+++|++|++++|++++..|..+..+...+|+.|++++|.+.+..+..+ ..+++|++|++++|
T Consensus 143 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n 222 (455)
T 3v47_A 143 KIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGN 222 (455)
T ss_dssp SCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTS
T ss_pred ccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCC
Confidence 887876 889999999999999999888888888754489999999999988766543 36689999999999
Q ss_pred eecccCcccccCC---CCCCEEECCCCcCCCC----------cchhhhc--CCCCcEEecCCCcCCcccCCCCCCCCCCC
Q 047927 708 QLEGMVPKSLANC---SVLEILDLGNNQFDDT----------FPCWVKN--ASRLHVLILRSNNFFGNISCPRYNVSWPM 772 (1005)
Q Consensus 708 ~l~~~~p~~l~~l---~~L~~L~Ls~N~l~~~----------~p~~~~~--l~~L~~L~L~~N~l~~~~~~~~~~~~l~~ 772 (1005)
++++..|..+... ++|+.|++++|.+.+. .+..+.. .++|++|++++|++.+.. |..+..+++
T Consensus 223 ~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~~~l~~ 300 (455)
T 3v47_A 223 GFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALL--KSVFSHFTD 300 (455)
T ss_dssp CCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEEC--TTTTTTCTT
T ss_pred cccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccc--hhhcccCCC
Confidence 9998888777654 8999999999865542 2223333 368999999999999876 888999999
Q ss_pred ccEEEccCCcccccCChHHHhhhhhhhhccCCchhhhchhhheecccccccccccEEEEEcchHHHHHHhcccceEEECC
Q 047927 773 LQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFS 852 (1005)
Q Consensus 773 L~~L~ls~N~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls 852 (1005)
|+.|++++|++.+..|..+ ..++.|+.|+|+
T Consensus 301 L~~L~Ls~n~l~~~~~~~~-------------------------------------------------~~l~~L~~L~Ls 331 (455)
T 3v47_A 301 LEQLTLAQNEINKIDDNAF-------------------------------------------------WGLTHLLKLNLS 331 (455)
T ss_dssp CCEEECTTSCCCEECTTTT-------------------------------------------------TTCTTCCEEECC
T ss_pred CCEEECCCCcccccChhHh-------------------------------------------------cCcccCCEEECC
Confidence 9999999999997766432 146789999999
Q ss_pred CCeeeccCcccccCCCCCCEEECCCCcCcccCchhhhcCCCCCEEeCCCCcCcccCcccccCCCCCCeEEccCCcccccC
Q 047927 853 RNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLNLSYNHLVGRI 932 (1005)
Q Consensus 853 ~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~i 932 (1005)
+|++++..|..++++++|++|+|++|++++.+|..++++++|++|||++|++++..+..+..+++|++|++++|+++|.+
T Consensus 332 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 411 (455)
T 3v47_A 332 QNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 411 (455)
T ss_dssp SSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCT
T ss_pred CCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCC
Confidence 99999999999999999999999999999999999999999999999999999888888899999999999999999999
Q ss_pred CCCCcc
Q 047927 933 PTSTQL 938 (1005)
Q Consensus 933 p~~~~~ 938 (1005)
|....+
T Consensus 412 ~~~~~l 417 (455)
T 3v47_A 412 PRIDYL 417 (455)
T ss_dssp TTTHHH
T ss_pred CcchHH
Confidence 965444
No 28
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=4.4e-38 Score=342.37 Aligned_cols=293 Identities=28% Similarity=0.404 Sum_probs=209.3
Q ss_pred CCCcHHHHHHHHHHhhhCCCCCCCcccccCCCCCCCCcc--cceeEECCC---CCEEEEEcCCCCccc--ccCCCccccc
Q 047927 6 GQCQSDQQSLLLQMKSRLTFDSSVSFRMVQWSQSNDCCT--WSGVDCDEA---GRVIGLDLSEESISA--GIDNSSSLFS 78 (1005)
Q Consensus 6 ~~~~~~~~~~ll~~k~~~~~~~~~~~~~~~w~~~~~~c~--w~gv~c~~~---~~v~~L~L~~~~l~~--~~~~~~~l~~ 78 (1005)
+.|.++|++||++||+++.+ |. .+++|..+.+||. |.||.|+.. ++|++|+++++.+.+ .+ +..+.+
T Consensus 1 ~~c~~~~~~aL~~~k~~~~~-~~---~l~~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~--~~~l~~ 74 (313)
T 1ogq_A 1 ELCNPQDKQALLQIKKDLGN-PT---TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPI--PSSLAN 74 (313)
T ss_dssp CCSCHHHHHHHHHHHHHTTC-CG---GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEEC--CGGGGG
T ss_pred CCCCHHHHHHHHHHHHhcCC-cc---cccCCCCCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCccc--ChhHhC
Confidence 46999999999999999964 42 6899988889998 999999864 799999999999988 66 788999
Q ss_pred ccccceeecCC-ccCCCCCCCCcccCCCCCcEEEcccCCCcCCCcccccCCCCCcEEeCCCcccccCccccCCCChhhhh
Q 047927 79 LKYLQSLNLAF-NMFNATEIPSGLGNLTNLTTLNLSNAGFAGQIPIQVSGMTRLVTLDLSGMYFVRAPLKLENPNLSGLL 157 (1005)
Q Consensus 79 l~~L~~L~Ls~-~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~l 157 (1005)
+++|++|++++ |.+.+. +|..++.+++|++|++++|.+.+.+|..++++++|++|++++|.++.... ..+
T Consensus 75 l~~L~~L~L~~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p--------~~~ 145 (313)
T 1ogq_A 75 LPYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLP--------PSI 145 (313)
T ss_dssp CTTCSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCC--------GGG
T ss_pred CCCCCeeeCCCCCccccc-CChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCC--------hHH
Confidence 99999999995 888766 89999999999999999999998899999999999999999887653110 001
Q ss_pred hcCccCceeecCCccCCCchhhHHHHHhccCCCccEEEccCCCCCCCCCccccCCC-CCcEEECCCCCCCCCcchhccCC
Q 047927 158 QNLAELRELYLDGVNISAPGIEWCQALSSLVPKLQVLSLSGCFLSGPVDPSLSNLR-SLSVIRLDMNDLYSPVPEFLADF 236 (1005)
Q Consensus 158 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~L~~L~L~~n~~~~~~~~~l~~l~-~L~~L~l~~n~~~~~~p~~l~~l 236 (1005)
.++ ++|++|++++|.+++.+|..+.+++ +|++|++++|.+.+.+|..+..+
T Consensus 146 ~~l----------------------------~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l 197 (313)
T 1ogq_A 146 SSL----------------------------PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL 197 (313)
T ss_dssp GGC----------------------------TTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGC
T ss_pred hcC----------------------------CCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCC
Confidence 111 5555666666666666666677766 77777777777766666666666
Q ss_pred CCCcEEEccCCCCCccCccccCCCCCCCEEeCCCCCCCCCCCCcccCCCCCcEEEcccccccccCchhhccCCCCCEEee
Q 047927 237 SNLTSLYLSSCGLHGAFPEKILQLPTLETLDLSYNELLQGSLPDFHQNLSLETLILSATNFSGILPDSIKNLKNLSRVEF 316 (1005)
Q Consensus 237 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l 316 (1005)
+ |++|++++|.+++..|..+..+++|++|++++|.+. ...+.+..+++|++|++++|.+++.+|..+..+++|++|++
T Consensus 198 ~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 275 (313)
T 1ogq_A 198 N-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA-FDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNV 275 (313)
T ss_dssp C-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEEC-CBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEEC
T ss_pred c-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCcee-eecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEEC
Confidence 5 777777777777666666677777777777766542 22333444555555555555555555555555555555555
Q ss_pred cCCccCCCCCccCCCCCCCcEEECcCCc
Q 047927 317 YLCNFNGPIPTSMSDLSQLVYLDMSFNH 344 (1005)
Q Consensus 317 ~~n~~~~~~~~~l~~l~~L~~L~L~~n~ 344 (1005)
++|.+++.+|.. ..+++|+.+++++|.
T Consensus 276 s~N~l~~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 276 SFNNLCGEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp CSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred cCCcccccCCCC-ccccccChHHhcCCC
Confidence 555555444443 444555555555544
No 29
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=3.8e-35 Score=339.18 Aligned_cols=374 Identities=21% Similarity=0.174 Sum_probs=243.1
Q ss_pred ccccEEEcCCCcCCCccCccCCCCCCCCEEeCcCcccccccccccccccccCCEEeCCCCccCCCCCccccCcCCCcEEE
Q 047927 381 LNLFHVDLSHNNLGGSIPQSLFELPMVQHLLLADNQFDGHVTEISNASSSLLDTLDLSDNNLEGPIPLSFFELKNLKILL 460 (1005)
Q Consensus 381 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 460 (1005)
++|++|++++|.+++..|..+.++++|++|++++|.+.+.++......+++|++|++++|.+++..|..|..+++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 34555555555555444445555555555555555444333333333345556666666666666677777777777777
Q ss_pred CCCCcceeccc-hhHHHhcCCCCeEeccCCeeeEecCCcccccCcccceEEcCCccCcCCCCCCCCCceeEEECcCCcCC
Q 047927 461 LSSNKFVGTIE-LDAIQRLRNLFRLDLSYNRLAVVAGSSVYCFPPLLTTLSLASCKLSAIPNLRKQTKLYHLDLSDNQIS 539 (1005)
Q Consensus 461 L~~n~l~~~~~-~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~l~~l~~l~~L~~L~Ls~n~l~ 539 (1005)
+++|++.+.++ ...+..+++|++|++++|.+..+....+ +..+++|++|++++|.+.
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~----------------------~~~l~~L~~L~L~~n~l~ 167 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASF----------------------FLNMRRFHVLDLTFNKVK 167 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGG----------------------GGGCTTCCEEECTTCCBS
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccc----------------------cCCCCcccEEeCCCCccc
Confidence 77777764332 1235566666666666666554433222 344455555555555555
Q ss_pred CCCChhhhhhcCCcccEEeCCCCcccCCCCCC-------ccccCCcccEEEeccCcccccCCCC------CCCcceeeCc
Q 047927 540 GEIPNWLWKIGKDSFNHLNLSHNLLVSLEQPY-------SISDLTSLSVLDLHSNQIQGKIPPL------PPNAAYVDYS 606 (1005)
Q Consensus 540 ~~~p~~~~~~~~~~L~~L~L~~n~l~~~~~~~-------~~~~l~~L~~L~l~~n~l~~~~~~~------~~~l~~L~ls 606 (1005)
+..|..+.......++.|++++|.+..++... .+..+++|++|++++|++.+.+|.. ..+++.++++
T Consensus 168 ~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~ 247 (455)
T 3v47_A 168 SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILS 247 (455)
T ss_dssp CCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECT
T ss_pred ccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeec
Confidence 55555444444445555555555554442211 1223456666666666665443321 1233344444
Q ss_pred CCcCccCCCcchhcccCceEEEEecCCcccccCChhhhc--cCCCCeEEccCccccccCCchhhhcCcccccEEECCCCc
Q 047927 607 GNNFTSSIPVDIGSFMSLSIFFSFSKNSLTGVIPESICN--ATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNN 684 (1005)
Q Consensus 607 ~n~~~~~~p~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~--l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~ 684 (1005)
+|...+... ..+.+.+..+..+.. .++|+.|++++|++++..|..+..++ +|++|++++|+
T Consensus 248 ~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~--~L~~L~Ls~n~ 310 (455)
T 3v47_A 248 NSYNMGSSF---------------GHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFT--DLEQLTLAQNE 310 (455)
T ss_dssp TCTTTSCCT---------------TCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCT--TCCEEECTTSC
T ss_pred ccccccccc---------------chhhhccCcccccccccccCceEEEecCccccccchhhcccCC--CCCEEECCCCc
Confidence 333322110 011122222223333 36899999999999988899999888 89999999999
Q ss_pred CCccccCccCCCCCccEEeCCCCeecccCcccccCCCCCCEEECCCCcCCCCcchhhhcCCCCcEEecCCCcCCcccCCC
Q 047927 685 LNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCP 764 (1005)
Q Consensus 685 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~ 764 (1005)
+++..|..|..+++|++|+|++|++++..|..|..+++|++|++++|++++..|.+|..+++|++|++++|++++.. +
T Consensus 311 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~ 388 (455)
T 3v47_A 311 INKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVP--D 388 (455)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCC--T
T ss_pred ccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCC--H
Confidence 99999999999999999999999999888999999999999999999999998999999999999999999998754 5
Q ss_pred CCCCCCCCccEEEccCCcccccCCh-HHHhhh
Q 047927 765 RYNVSWPMLQIIDLASNKFSGRLPQ-KWLLNL 795 (1005)
Q Consensus 765 ~~~~~l~~L~~L~ls~N~~~~~~p~-~~~~~l 795 (1005)
..+..+++|+.|++++|++++.+|. .++..|
T Consensus 389 ~~~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~ 420 (455)
T 3v47_A 389 GIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRW 420 (455)
T ss_dssp TTTTTCTTCCEEECCSSCBCCCTTTTHHHHHH
T ss_pred hHhccCCcccEEEccCCCcccCCCcchHHHHH
Confidence 5678899999999999999999993 444333
No 30
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=8.5e-35 Score=332.58 Aligned_cols=361 Identities=18% Similarity=0.159 Sum_probs=228.0
Q ss_pred CCCccccCcCCCcEEECCCCcceeccchhHHHhcCCCCeEeccCCeeeEecCCcccccCcccceEEcCCccCcCCCCCCC
Q 047927 445 PIPLSFFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRLAVVAGSSVYCFPPLLTTLSLASCKLSAIPNLRK 524 (1005)
Q Consensus 445 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~l~~l~~ 524 (1005)
..+..++.+++|++|++++|.+.+ ++ .+..+++|++|++++|+++.++ ....+.|++|++++|+++.++ +..
T Consensus 33 ~~~~~~~~l~~L~~L~Ls~n~l~~-~~--~l~~l~~L~~L~Ls~n~l~~~~----~~~l~~L~~L~Ls~N~l~~~~-~~~ 104 (457)
T 3bz5_A 33 TDTISEEQLATLTSLDCHNSSITD-MT--GIEKLTGLTKLICTSNNITTLD----LSQNTNLTYLACDSNKLTNLD-VTP 104 (457)
T ss_dssp TSEEEHHHHTTCCEEECCSSCCCC-CT--TGGGCTTCSEEECCSSCCSCCC----CTTCTTCSEEECCSSCCSCCC-CTT
T ss_pred ccccChhHcCCCCEEEccCCCccc-Ch--hhcccCCCCEEEccCCcCCeEc----cccCCCCCEEECcCCCCceee-cCC
Confidence 334456666677777777776663 33 4566666666666666665543 223345666666666666654 666
Q ss_pred CCceeEEECcCCcCCCCCChhhhhhcCCcccEEeCCCCcccCCCCCCccccCCcccEEEeccCcccccCCCCCCCcceee
Q 047927 525 QTKLYHLDLSDNQISGEIPNWLWKIGKDSFNHLNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIPPLPPNAAYVD 604 (1005)
Q Consensus 525 l~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 604 (1005)
+++|++|++++|++++ +| +. ...+|++|++++|+++.++ +..+++|++|++++|+..+.++
T Consensus 105 l~~L~~L~L~~N~l~~-l~--~~--~l~~L~~L~l~~N~l~~l~----l~~l~~L~~L~l~~n~~~~~~~---------- 165 (457)
T 3bz5_A 105 LTKLTYLNCDTNKLTK-LD--VS--QNPLLTYLNCARNTLTEID----VSHNTQLTELDCHLNKKITKLD---------- 165 (457)
T ss_dssp CTTCCEEECCSSCCSC-CC--CT--TCTTCCEEECTTSCCSCCC----CTTCTTCCEEECTTCSCCCCCC----------
T ss_pred CCcCCEEECCCCcCCe-ec--CC--CCCcCCEEECCCCccceec----cccCCcCCEEECCCCCcccccc----------
Confidence 6677777777776664 22 21 2244555555555555541 3445566666666664433221
Q ss_pred CcCCcCccCCCcchhcccCceEEEEecCCcccccCChhhhccCCCCeEEccCccccccCCchhhhcCcccccEEECCCCc
Q 047927 605 YSGNNFTSSIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNN 684 (1005)
Q Consensus 605 ls~n~~~~~~p~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~ 684 (1005)
+ ..++.|++|++++|++++. | +..+++|+.|++++|++++. .+..++ +|++|++++|+
T Consensus 166 -------------~-~~l~~L~~L~ls~n~l~~l-~--l~~l~~L~~L~l~~N~l~~~---~l~~l~--~L~~L~Ls~N~ 223 (457)
T 3bz5_A 166 -------------V-TPQTQLTTLDCSFNKITEL-D--VSQNKLLNRLNCDTNNITKL---DLNQNI--QLTFLDCSSNK 223 (457)
T ss_dssp -------------C-TTCTTCCEEECCSSCCCCC-C--CTTCTTCCEEECCSSCCSCC---CCTTCT--TCSEEECCSSC
T ss_pred -------------c-ccCCcCCEEECCCCcccee-c--cccCCCCCEEECcCCcCCee---ccccCC--CCCEEECcCCc
Confidence 1 1245556666666666552 3 55566666666666666643 244554 66666666666
Q ss_pred CCccccCccCCCCCccEEeCCCCeecccCcccccCCCCCCEEECCCCcCCCCcchhhhcCCCCcEEecCCCcCCcccCCC
Q 047927 685 LNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCP 764 (1005)
Q Consensus 685 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~ 764 (1005)
+++. | +..+++|++|++++|++++.. +..+++|+.|++++| +|+.|++++|++.+.+ |
T Consensus 224 l~~i-p--~~~l~~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~--~ 281 (457)
T 3bz5_A 224 LTEI-D--VTPLTQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYF--Q 281 (457)
T ss_dssp CSCC-C--CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEE--E
T ss_pred cccc-C--ccccCCCCEEEeeCCcCCCcC---HHHCCCCCEEeccCC--------------CCCEEECCCCccCCcc--c
Confidence 6652 3 555666666666666666542 334555556655554 3456777777777765 3
Q ss_pred CCCCCCCCccEEEccCCcccccCChHHHhhhhhhhhccCCchhhhchhhheecccccccccccEEEEEcchHHHHHHhcc
Q 047927 765 RYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILN 844 (1005)
Q Consensus 765 ~~~~~l~~L~~L~ls~N~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 844 (1005)
...+++|+.|++++|++.+.+|... ..+ .. +. ....+
T Consensus 282 --~~~l~~L~~L~Ls~n~~l~~l~~~~-~~L--------------~~-----L~---------------------l~~~~ 318 (457)
T 3bz5_A 282 --AEGCRKIKELDVTHNTQLYLLDCQA-AGI--------------TE-----LD---------------------LSQNP 318 (457)
T ss_dssp --CTTCTTCCCCCCTTCTTCCEEECTT-CCC--------------SC-----CC---------------------CTTCT
T ss_pred --ccccccCCEEECCCCcccceeccCC-Ccc--------------eE-----ec---------------------hhhcc
Confidence 3567888888888888877776311 000 00 00 01346
Q ss_pred cceEEECCCCeeeccCcccccCCCCCCEEECCCCcCcccCchhhhcCCCCCEEeCCCCcCcccCcccccCCCCCCeEEcc
Q 047927 845 IFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLNLS 924 (1005)
Q Consensus 845 ~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls 924 (1005)
.|+.|++++|+++|. | ++++++|+.||+++|++++ ++.|+.|++++|+++|. +++..|..++++
T Consensus 319 ~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~ 382 (457)
T 3bz5_A 319 KLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLT 382 (457)
T ss_dssp TCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCB
T ss_pred cCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCccccc
Confidence 789999999999984 4 9999999999999999996 24667788999999987 355678899999
Q ss_pred CCcccccCCCC
Q 047927 925 YNHLVGRIPTS 935 (1005)
Q Consensus 925 ~N~l~g~ip~~ 935 (1005)
+|+++|.||..
T Consensus 383 ~N~l~g~ip~~ 393 (457)
T 3bz5_A 383 NNSLTIAVSPD 393 (457)
T ss_dssp TTBEEEECCTT
T ss_pred cCcEEEEcChh
Confidence 99999999975
No 31
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=2.6e-35 Score=320.56 Aligned_cols=259 Identities=29% Similarity=0.473 Sum_probs=192.3
Q ss_pred CceEEEEecCCcccc--cCChhhhccCCCCeEEccC-ccccccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCc
Q 047927 623 SLSIFFSFSKNSLTG--VIPESICNATNLLVLDLSY-NYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSL 699 (1005)
Q Consensus 623 ~~L~~L~l~~n~l~~--~~p~~l~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L 699 (1005)
..++.|++++|.+++ .+|..+.++++|++|++++ |.+.+.+|..+..++ +|++|++++|++++.+|..|..+++|
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~--~L~~L~Ls~n~l~~~~p~~~~~l~~L 127 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLT--QLHYLYITHTNVSGAIPDFLSQIKTL 127 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCT--TCSEEEEEEECCEEECCGGGGGCTTC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCC--CCCEEECcCCeeCCcCCHHHhCCCCC
Confidence 356666666666666 6666666666666666663 666666666666655 55555555555555555555555555
Q ss_pred cEEeCCCCeecccCcccccCCCCCCEEECCCCcCCCCcchhhhcCCCCcEEecCCCcCCcccCCCCCCCCCC-CccEEEc
Q 047927 700 RTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWP-MLQIIDL 778 (1005)
Q Consensus 700 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~-~L~~L~l 778 (1005)
++|++++|.+++.+|..+..+++|++|++++|++++.+|.. +..++ .|+.|++
T Consensus 128 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~--------------------------l~~l~~~L~~L~L 181 (313)
T 1ogq_A 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS--------------------------YGSFSKLFTSMTI 181 (313)
T ss_dssp CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGG--------------------------GGCCCTTCCEEEC
T ss_pred CEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHH--------------------------HhhhhhcCcEEEC
Confidence 55555555555555555555555555555555555444444 44444 5666666
Q ss_pred cCCcccccCChHHHhhhhhhhhccCCchhhhchhhheecccccccccccEEEEEcchHHHHHHhcccceEEECCCCeeec
Q 047927 779 ASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEG 858 (1005)
Q Consensus 779 s~N~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g 858 (1005)
++|++++.+|..+. .++ |+.|++++|++++
T Consensus 182 ~~N~l~~~~~~~~~-------------------------------------------------~l~-L~~L~Ls~N~l~~ 211 (313)
T 1ogq_A 182 SRNRLTGKIPPTFA-------------------------------------------------NLN-LAFVDLSRNMLEG 211 (313)
T ss_dssp CSSEEEEECCGGGG-------------------------------------------------GCC-CSEEECCSSEEEE
T ss_pred cCCeeeccCChHHh-------------------------------------------------CCc-ccEEECcCCcccC
Confidence 66666666664321 233 7899999999999
Q ss_pred cCcccccCCCCCCEEECCCCcCcccCchhhhcCCCCCEEeCCCCcCcccCcccccCCCCCCeEEccCCcccccCCCCCcc
Q 047927 859 PIPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLNLSYNHLVGRIPTSTQL 938 (1005)
Q Consensus 859 ~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~~~ 938 (1005)
.+|..++.+++|++|+|++|++++.+|. ++.+++|++|||++|+++|.+|..+..+++|++||+++|+++|.+|...++
T Consensus 212 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l 290 (313)
T 1ogq_A 212 DASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNL 290 (313)
T ss_dssp CCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTG
T ss_pred cCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccc
Confidence 9999999999999999999999988777 889999999999999999999999999999999999999999999998888
Q ss_pred cccccccccCCCCCCCCCCCCC
Q 047927 939 QSFLATSFEGNDRLWGPPLNVC 960 (1005)
Q Consensus 939 ~~~~~~~~~gn~~lc~~~~~~c 960 (1005)
..+....+.||+.+||.|...|
T Consensus 291 ~~L~~l~l~~N~~lc~~p~~~C 312 (313)
T 1ogq_A 291 QRFDVSAYANNKCLCGSPLPAC 312 (313)
T ss_dssp GGSCGGGTCSSSEEESTTSSCC
T ss_pred cccChHHhcCCCCccCCCCCCC
Confidence 8888899999999999998777
No 32
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=4.5e-35 Score=334.84 Aligned_cols=128 Identities=18% Similarity=0.149 Sum_probs=96.9
Q ss_pred EEecCCcccccCChhhhccCCCCeEEccCccccccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCccEEeCCCC
Q 047927 628 FSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGN 707 (1005)
Q Consensus 628 L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 707 (1005)
+++++|.+.+.+| +..+++|+.|++++|...+.+|.. .. +|+.|++++| ++|++|++++|
T Consensus 269 L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~---~~--~L~~L~l~~~-------------~~L~~L~L~~N 328 (457)
T 3bz5_A 269 IDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQ---AA--GITELDLSQN-------------PKLVYLYLNNT 328 (457)
T ss_dssp CCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECT---TC--CCSCCCCTTC-------------TTCCEEECTTC
T ss_pred EECCCCccCCccc--ccccccCCEEECCCCcccceeccC---CC--cceEechhhc-------------ccCCEEECCCC
Confidence 3444455444554 356788888889888887777742 22 6667766655 58999999999
Q ss_pred eecccCcccccCCCCCCEEECCCCcCCCCcchhhhcCCCCcEEecCCCcCCcccCCCCCCCCCCCccEEEccCCcccccC
Q 047927 708 QLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRL 787 (1005)
Q Consensus 708 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~~~~~~ 787 (1005)
++++. + +..+++|+.|++++|++++ ++.|..|++++|+++|. ..+..|+.+++++|+++|.+
T Consensus 329 ~l~~l-~--l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-------~~~~~l~~l~l~~N~l~g~i 390 (457)
T 3bz5_A 329 ELTEL-D--VSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-------GQTITMPKETLTNNSLTIAV 390 (457)
T ss_dssp CCSCC-C--CTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-------EEEEECCCBCCBTTBEEEEC
T ss_pred ccccc-c--cccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec-------ceeeecCccccccCcEEEEc
Confidence 99984 3 8899999999999999986 35677778999999875 24566788899999999999
Q ss_pred ChHHHh
Q 047927 788 PQKWLL 793 (1005)
Q Consensus 788 p~~~~~ 793 (1005)
|..++.
T Consensus 391 p~~~~~ 396 (457)
T 3bz5_A 391 SPDLLD 396 (457)
T ss_dssp CTTCBC
T ss_pred ChhHhc
Confidence 977654
No 33
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=3.2e-34 Score=333.13 Aligned_cols=347 Identities=17% Similarity=0.161 Sum_probs=279.7
Q ss_pred eEEECcCCcCCCCCChhhhhhcCCcccEEeCCCCcccCCCCCCccccCCcccEEEeccCcccccCCCCCCCcceeeCcCC
Q 047927 529 YHLDLSDNQISGEIPNWLWKIGKDSFNHLNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIPPLPPNAAYVDYSGN 608 (1005)
Q Consensus 529 ~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ls~n 608 (1005)
+.++.+++.++ .+|..+ ...++.|++++|.+..+. +..+..+++|++|++++|.+++..|
T Consensus 14 ~~v~c~~~~l~-~ip~~~----~~~l~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~i~~~~~-------------- 73 (477)
T 2id5_A 14 RAVLCHRKRFV-AVPEGI----PTETRLLDLGKNRIKTLN-QDEFASFPHLEELELNENIVSAVEP-------------- 73 (477)
T ss_dssp TEEECCSCCCS-SCCSCC----CTTCSEEECCSSCCCEEC-TTTTTTCTTCCEEECTTSCCCEECT--------------
T ss_pred CEEEeCCCCcC-cCCCCC----CCCCcEEECCCCccceEC-HhHccCCCCCCEEECCCCccCEeCh--------------
Confidence 46777777776 556543 245777777777776653 2345666777777777777664433
Q ss_pred cCccCCCcchhcccCceEEEEecCCcccccCChhhhccCCCCeEEccCccccccCCchhhhcCcccccEEECCCCcCCcc
Q 047927 609 NFTSSIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGT 688 (1005)
Q Consensus 609 ~~~~~~p~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~ 688 (1005)
..+. .++.|++|++++|.+++..+..|.++++|++|+|++|++++..|..+..++ +|++|++++|.+++.
T Consensus 74 -------~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~--~L~~L~l~~n~l~~~ 143 (477)
T 2id5_A 74 -------GAFN-NLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLY--NLKSLEVGDNDLVYI 143 (477)
T ss_dssp -------TTTT-TCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCT--TCCEEEECCTTCCEE
T ss_pred -------hhhh-CCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccc--cCCEEECCCCcccee
Confidence 2222 467888888888888877777788899999999999999888888888887 899999999999988
Q ss_pred ccCccCCCCCccEEeCCCCeecccCcccccCCCCCCEEECCCCcCCCCcchhhhcCCCCcEEecCCCcCCcccCCCCCCC
Q 047927 689 VSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNV 768 (1005)
Q Consensus 689 ~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~ 768 (1005)
.+..|..+++|++|++++|++++..+..+..+++|+.|++++|.+++..+..|..+++|+.|++++|.+.+.+ |....
T Consensus 144 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~--~~~~~ 221 (477)
T 2id5_A 144 SHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTM--TPNCL 221 (477)
T ss_dssp CTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEE--CTTTT
T ss_pred ChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCcccccc--Ccccc
Confidence 8888999999999999999999877788899999999999999999888888999999999999999887776 66666
Q ss_pred CCCCccEEEccCCcccccCChHHHhhhhhhhhccCCchhhhchhhheecccccccccccEEEEEcchHHHHHHhcccceE
Q 047927 769 SWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTS 848 (1005)
Q Consensus 769 ~l~~L~~L~ls~N~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 848 (1005)
...+|+.|++++|++++ +|...+ ..+++|+.
T Consensus 222 ~~~~L~~L~l~~n~l~~-~~~~~~------------------------------------------------~~l~~L~~ 252 (477)
T 2id5_A 222 YGLNLTSLSITHCNLTA-VPYLAV------------------------------------------------RHLVYLRF 252 (477)
T ss_dssp TTCCCSEEEEESSCCCS-CCHHHH------------------------------------------------TTCTTCCE
T ss_pred cCccccEEECcCCcccc-cCHHHh------------------------------------------------cCccccCe
Confidence 77789999999998874 443222 24678999
Q ss_pred EECCCCeeeccCcccccCCCCCCEEECCCCcCcccCchhhhcCCCCCEEeCCCCcCcccCcccccCCCCCCeEEccCCcc
Q 047927 849 IDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLNLSYNHL 928 (1005)
Q Consensus 849 L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l 928 (1005)
|+|++|++++..+..|.++++|+.|+|++|++++..|..+.++++|+.|||++|++++..+..|..+++|++|++++|++
T Consensus 253 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 332 (477)
T 2id5_A 253 LNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPL 332 (477)
T ss_dssp EECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCE
T ss_pred eECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCc
Confidence 99999999999999999999999999999999999999999999999999999999998888999999999999999999
Q ss_pred cccCCCCCcccccccccccCCCCCCCCC
Q 047927 929 VGRIPTSTQLQSFLATSFEGNDRLWGPP 956 (1005)
Q Consensus 929 ~g~ip~~~~~~~~~~~~~~gn~~lc~~~ 956 (1005)
+|.++....+.......+.++...|+.|
T Consensus 333 ~c~c~~~~~~~~~~~~~~~~~~~~C~~p 360 (477)
T 2id5_A 333 ACDCRLLWVFRRRWRLNFNRQQPTCATP 360 (477)
T ss_dssp ECSGGGHHHHTTTTSSCCTTCCCBEEES
T ss_pred cCccchHhHHhhhhccccCccCceeCCc
Confidence 9876532222222334566777777544
No 34
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=5.7e-33 Score=320.81 Aligned_cols=347 Identities=27% Similarity=0.350 Sum_probs=247.9
Q ss_pred CcCCCcEEECCCCcceeccchhHHHhcCCCCeEeccCCeeeEecCCcccccCcccceEEcCCccCcCCCCCCCCCceeEE
Q 047927 452 ELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRLAVVAGSSVYCFPPLLTTLSLASCKLSAIPNLRKQTKLYHL 531 (1005)
Q Consensus 452 ~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~l~~l~~l~~L~~L 531 (1005)
.+++++.|+++++.+. .++ .+..+++|++|++++|.++.+ +.+..+++|++|
T Consensus 44 ~l~~l~~L~l~~~~i~-~l~--~~~~l~~L~~L~Ls~n~l~~~-------------------------~~~~~l~~L~~L 95 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIK-SID--GVEYLNNLTQINFSNNQLTDI-------------------------TPLKNLTKLVDI 95 (466)
T ss_dssp HHHTCCEEECCSSCCC-CCT--TGGGCTTCCEEECCSSCCCCC-------------------------GGGTTCTTCCEE
T ss_pred HhccccEEecCCCCCc-cCc--chhhhcCCCEEECCCCccCCc-------------------------hhhhccccCCEE
Confidence 3456666666666655 333 245555555555555555444 334444555555
Q ss_pred ECcCCcCCCCCChhhhhhcCCcccEEeCCCCcccCCCCCCccccCCcccEEEeccCcccccCCCCCCCcceeeCcCCcCc
Q 047927 532 DLSDNQISGEIPNWLWKIGKDSFNHLNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIPPLPPNAAYVDYSGNNFT 611 (1005)
Q Consensus 532 ~Ls~n~l~~~~p~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ls~n~~~ 611 (1005)
++++|.+.+..+ +. ....|++|++++|.+..++. +..+++|++|++++|.+.+. +
T Consensus 96 ~l~~n~l~~~~~--~~--~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~-~----------------- 150 (466)
T 1o6v_A 96 LMNNNQIADITP--LA--NLTNLTGLTLFNNQITDIDP---LKNLTNLNRLELSSNTISDI-S----------------- 150 (466)
T ss_dssp ECCSSCCCCCGG--GT--TCTTCCEEECCSSCCCCCGG---GTTCTTCSEEEEEEEEECCC-G-----------------
T ss_pred ECCCCccccChh--hc--CCCCCCEEECCCCCCCCChH---HcCCCCCCEEECCCCccCCC-h-----------------
Confidence 555555543322 21 22345555555555444421 45566777777777766531 1
Q ss_pred cCCCcchhcccCceEEEEecCCcccccCChhhhccCCCCeEEccCccccccCCchhhhcCcccccEEECCCCcCCccccC
Q 047927 612 SSIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSA 691 (1005)
Q Consensus 612 ~~~p~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~ 691 (1005)
. ...++.|++|+++ |.+.+.. .+..+++|+.|++++|.+++. ..+..++ +|++|++++|.+.+..+
T Consensus 151 -----~-~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n~l~~~--~~l~~l~--~L~~L~l~~n~l~~~~~- 216 (466)
T 1o6v_A 151 -----A-LSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISSNKVSDI--SVLAKLT--NLESLIATNNQISDITP- 216 (466)
T ss_dssp -----G-GTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSSCCCCC--GGGGGCT--TCSEEECCSSCCCCCGG-
T ss_pred -----h-hccCCcccEeecC-CcccCch--hhccCCCCCEEECcCCcCCCC--hhhccCC--CCCEEEecCCccccccc-
Confidence 1 1135566666665 3444332 377888888888888888743 3467776 88888888888887766
Q ss_pred ccCCCCCccEEeCCCCeecccCcccccCCCCCCEEECCCCcCCCCcchhhhcCCCCcEEecCCCcCCcccCCCCCCCCCC
Q 047927 692 TFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWP 771 (1005)
Q Consensus 692 ~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~ 771 (1005)
+..+++|++|++++|++++. ..+..+++|+.|++++|++++..| +..+++|+.|++++|++.+.. . +..++
T Consensus 217 -~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~---~-~~~l~ 287 (466)
T 1o6v_A 217 -LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNIS---P-LAGLT 287 (466)
T ss_dssp -GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCG---G-GTTCT
T ss_pred -ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCccc---c-ccCCC
Confidence 66788899999999988864 467888999999999999987765 788899999999999888643 2 77889
Q ss_pred CccEEEccCCcccccCChHHHhhhhhhhhccCCchhhhchhhheecccccccccccEEEEEcchHHHHHHhcccceEEEC
Q 047927 772 MLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDF 851 (1005)
Q Consensus 772 ~L~~L~ls~N~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~L 851 (1005)
+|+.|++++|++.+..|. ..+++|+.|+|
T Consensus 288 ~L~~L~L~~n~l~~~~~~---------------------------------------------------~~l~~L~~L~L 316 (466)
T 1o6v_A 288 ALTNLELNENQLEDISPI---------------------------------------------------SNLKNLTYLTL 316 (466)
T ss_dssp TCSEEECCSSCCSCCGGG---------------------------------------------------GGCTTCSEEEC
T ss_pred ccCeEEcCCCcccCchhh---------------------------------------------------cCCCCCCEEEC
Confidence 999999999988764331 14678899999
Q ss_pred CCCeeeccCcccccCCCCCCEEECCCCcCcccCchhhhcCCCCCEEeCCCCcCcccCcccccCCCCCCeEEccCCccccc
Q 047927 852 SRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLNLSYNHLVGR 931 (1005)
Q Consensus 852 s~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ 931 (1005)
++|++++..| ++.+++|+.|++++|++++. ..++++++|+.|++++|++++.+| +..+++|+.|++++|++++.
T Consensus 317 ~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~ 390 (466)
T 1o6v_A 317 YFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNA 390 (466)
T ss_dssp CSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEECC
T ss_pred cCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccCC
Confidence 9999998776 78999999999999999975 468999999999999999999888 89999999999999999983
No 35
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=2.1e-32 Score=316.01 Aligned_cols=347 Identities=25% Similarity=0.316 Sum_probs=258.5
Q ss_pred ccccCCEEeCCCCccCCCCCccccCcCCCcEEECCCCcceeccchhHHHhcCCCCeEeccCCeeeEecCCcccccCcccc
Q 047927 428 SSSLLDTLDLSDNNLEGPIPLSFFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRLAVVAGSSVYCFPPLLT 507 (1005)
Q Consensus 428 ~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~ 507 (1005)
.++.++.|++.++.+.. +| .+..+++|++|++++|.+.+ ++. +..+++|++|++++|.+..++. ....+.|+
T Consensus 44 ~l~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~-~~~--~~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~ 115 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTD-ITP--LKNLTKLVDILMNNNQIADITP---LANLTNLT 115 (466)
T ss_dssp HHHTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CGG--GTTCTTCCEEECCSSCCCCCGG---GTTCTTCC
T ss_pred HhccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCC-chh--hhccccCCEEECCCCccccChh---hcCCCCCC
Confidence 35679999999999885 45 48889999999999999984 443 8888999999998888876654 33345566
Q ss_pred eEEcCCccCcCCCCCCCCCceeEEECcCCcCCCCCChhhhhhcCCcccEEeCCCCcccCCCCCCccccCCcccEEEeccC
Q 047927 508 TLSLASCKLSAIPNLRKQTKLYHLDLSDNQISGEIPNWLWKIGKDSFNHLNLSHNLLVSLEQPYSISDLTSLSVLDLHSN 587 (1005)
Q Consensus 508 ~L~L~~n~l~~l~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n 587 (1005)
+|++++|+++.++.+..+++|++|++++|.+.+ ++ .+..+++|++|+++ |
T Consensus 116 ~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~--------------------------~~---~~~~l~~L~~L~l~-~ 165 (466)
T 1o6v_A 116 GLTLFNNQITDIDPLKNLTNLNRLELSSNTISD--------------------------IS---ALSGLTSLQQLSFG-N 165 (466)
T ss_dssp EEECCSSCCCCCGGGTTCTTCSEEEEEEEEECC--------------------------CG---GGTTCTTCSEEEEE-E
T ss_pred EEECCCCCCCCChHHcCCCCCCEEECCCCccCC--------------------------Ch---hhccCCcccEeecC-C
Confidence 666666666666556666666666666665553 21 13445667777764 2
Q ss_pred cccccCCCCCCCcceeeCcCCcCccCCCcchhcccCceEEEEecCCcccccCChhhhccCCCCeEEccCccccccCCchh
Q 047927 588 QIQGKIPPLPPNAAYVDYSGNNFTSSIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCL 667 (1005)
Q Consensus 588 ~l~~~~~~~~~~l~~L~ls~n~~~~~~p~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~ 667 (1005)
.+.+.. . ...++.|++|++++|.+++. ..+..+++|+.|++++|.+++..| +
T Consensus 166 ~~~~~~-----------------------~-~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~ 217 (466)
T 1o6v_A 166 QVTDLK-----------------------P-LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--L 217 (466)
T ss_dssp SCCCCG-----------------------G-GTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--G
T ss_pred cccCch-----------------------h-hccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--c
Confidence 222110 0 11355666666666666543 347778888888888888876555 5
Q ss_pred hhcCcccccEEECCCCcCCccccCccCCCCCccEEeCCCCeecccCcccccCCCCCCEEECCCCcCCCCcchhhhcCCCC
Q 047927 668 INMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRL 747 (1005)
Q Consensus 668 ~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 747 (1005)
..++ +|+.|++++|++++. ..+..+++|++|++++|.+++..| +..+++|+.|++++|++++..+ +..+++|
T Consensus 218 ~~l~--~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L 289 (466)
T 1o6v_A 218 GILT--NLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTAL 289 (466)
T ss_dssp GGCT--TCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTC
T ss_pred cccC--CCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCcc
Confidence 5566 788888888888765 357778888888888888886654 7888888888888888887655 7788888
Q ss_pred cEEecCCCcCCcccCCCCCCCCCCCccEEEccCCcccccCChHHHhhhhhhhhccCCchhhhchhhheeccccccccccc
Q 047927 748 HVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDA 827 (1005)
Q Consensus 748 ~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 827 (1005)
+.|++++|++.+.. .+..+++|+.|++++|++++..|.
T Consensus 290 ~~L~L~~n~l~~~~----~~~~l~~L~~L~L~~n~l~~~~~~-------------------------------------- 327 (466)
T 1o6v_A 290 TNLELNENQLEDIS----PISNLKNLTYLTLYFNNISDISPV-------------------------------------- 327 (466)
T ss_dssp SEEECCSSCCSCCG----GGGGCTTCSEEECCSSCCSCCGGG--------------------------------------
T ss_pred CeEEcCCCcccCch----hhcCCCCCCEEECcCCcCCCchhh--------------------------------------
Confidence 88888888887643 267788899999999988875541
Q ss_pred EEEEEcchHHHHHHhcccceEEECCCCeeeccCcccccCCCCCCEEECCCCcCcccCchhhhcCCCCCEEeCCCCcCccc
Q 047927 828 ITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGT 907 (1005)
Q Consensus 828 ~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~~~ 907 (1005)
..++.|+.|++++|++++. ..++++++|+.|++++|++++.+| ++.+++|+.|++++|++++.
T Consensus 328 -------------~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~ 390 (466)
T 1o6v_A 328 -------------SSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNA 390 (466)
T ss_dssp -------------GGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEECC
T ss_pred -------------ccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccCC
Confidence 1367789999999999875 468999999999999999998877 89999999999999999973
No 36
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.2e-32 Score=319.96 Aligned_cols=321 Identities=19% Similarity=0.180 Sum_probs=274.5
Q ss_pred cEEEeccCcccccCCCCCCCcceeeCcCCcCccCCCcchhcccCceEEEEecCCcccccCChhhhccCCCCeEEccCccc
Q 047927 580 SVLDLHSNQIQGKIPPLPPNAAYVDYSGNNFTSSIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYL 659 (1005)
Q Consensus 580 ~~L~l~~n~l~~~~~~~~~~l~~L~ls~n~~~~~~p~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l 659 (1005)
+.++.+++.++......+.+++.|++++|++++..|..+. .++.|++|++++|.+++..|..|.++++|++|+|++|++
T Consensus 14 ~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l 92 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFA-SFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL 92 (477)
T ss_dssp TEEECCSCCCSSCCSCCCTTCSEEECCSSCCCEECTTTTT-TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEeCCCCcCcCCCCCCCCCcEEECCCCccceECHhHcc-CCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcC
Confidence 3555555555533333455677777777777655554444 588999999999999999999999999999999999999
Q ss_pred cccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCccEEeCCCCeecccCcccccCCCCCCEEECCCCcCCCCcch
Q 047927 660 SGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPC 739 (1005)
Q Consensus 660 ~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~ 739 (1005)
++..+..+..++ +|++|+|++|++.+..+..|..+++|++|++++|.+++..+..|..+++|+.|++++|++++..+.
T Consensus 93 ~~~~~~~~~~l~--~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 170 (477)
T 2id5_A 93 KLIPLGVFTGLS--NLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTE 170 (477)
T ss_dssp CSCCTTSSTTCT--TCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHH
T ss_pred CccCcccccCCC--CCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChh
Confidence 976666788888 999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred hhhcCCCCcEEecCCCcCCcccCCCCCCCCCCCccEEEccCCcccccCChHHHhhhhhhhhccCCchhhhchhhheeccc
Q 047927 740 WVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNL 819 (1005)
Q Consensus 740 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 819 (1005)
+|.++++|+.|++++|++.+.. +..+..+++|+.|++++|++.+.+|...+
T Consensus 171 ~l~~l~~L~~L~l~~n~i~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~~~--------------------------- 221 (477)
T 2id5_A 171 ALSHLHGLIVLRLRHLNINAIR--DYSFKRLYRLKVLEISHWPYLDTMTPNCL--------------------------- 221 (477)
T ss_dssp HHTTCTTCCEEEEESCCCCEEC--TTCSCSCTTCCEEEEECCTTCCEECTTTT---------------------------
T ss_pred HhcccCCCcEEeCCCCcCcEeC--hhhcccCcccceeeCCCCccccccCcccc---------------------------
Confidence 9999999999999999998765 67888999999999999999887775432
Q ss_pred ccccccccEEEEEcchHHHHHHhcccceEEECCCCeeeccCcccccCCCCCCEEECCCCcCcccCchhhhcCCCCCEEeC
Q 047927 820 SQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDL 899 (1005)
Q Consensus 820 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdL 899 (1005)
...+|+.|+|++|++++..+..++.+++|+.|+|++|++++..+..+.++++|+.|+|
T Consensus 222 ----------------------~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 279 (477)
T 2id5_A 222 ----------------------YGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQL 279 (477)
T ss_dssp ----------------------TTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEEC
T ss_pred ----------------------cCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEEC
Confidence 1246899999999999665578999999999999999999988889999999999999
Q ss_pred CCCcCcccCcccccCCCCCCeEEccCCcccccCCCC-CcccccccccccCCCCCCC
Q 047927 900 SMNNLSGTIPAQLASLNFLSVLNLSYNHLVGRIPTS-TQLQSFLATSFEGNDRLWG 954 (1005)
Q Consensus 900 s~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~-~~~~~~~~~~~~gn~~lc~ 954 (1005)
++|++++..|..|.++++|++||+++|+|++..|.. ..+..+....+.+|+--|.
T Consensus 280 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~ 335 (477)
T 2id5_A 280 VGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACD 335 (477)
T ss_dssp CSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECS
T ss_pred CCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCc
Confidence 999999999999999999999999999999855432 2334455566778876664
No 37
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.98 E-value=2.1e-31 Score=317.15 Aligned_cols=337 Identities=20% Similarity=0.207 Sum_probs=215.7
Q ss_pred CcCCCcEEECCCCcceeccchhHHHhcCCCCeEeccCCeeeEecCCcccccCcccceEEcCCccCcCCCCCCCCCceeEE
Q 047927 452 ELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRLAVVAGSSVYCFPPLLTTLSLASCKLSAIPNLRKQTKLYHL 531 (1005)
Q Consensus 452 ~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~l~~l~~l~~L~~L 531 (1005)
.+++++.+++++|.+. .+|...+..+++|++|++++|.+..++... +..+++|++|
T Consensus 49 ~l~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~-----------------------~~~l~~L~~L 104 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYA-----------------------FAYAHTIQKL 104 (597)
T ss_dssp GGCCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTT-----------------------TTTCTTCCEE
T ss_pred cCCCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHH-----------------------hcCCCCCCEE
Confidence 3567888888888876 677777888888888888888777655332 5566777777
Q ss_pred ECcCCcCCCCCChhhhhhcCCcccEEeCCCCcccCCCCCCccccCCcccEEEeccCcccccCCCCCCCcceeeCcCCcCc
Q 047927 532 DLSDNQISGEIPNWLWKIGKDSFNHLNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIPPLPPNAAYVDYSGNNFT 611 (1005)
Q Consensus 532 ~Ls~n~l~~~~p~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ls~n~~~ 611 (1005)
++++|.+++..|..+ ..+++|++|++++|.+++
T Consensus 105 ~L~~n~l~~~~~~~~---------------------------~~l~~L~~L~L~~n~l~~-------------------- 137 (597)
T 3oja_B 105 YMGFNAIRYLPPHVF---------------------------QNVPLLTVLVLERNDLSS-------------------- 137 (597)
T ss_dssp ECCSSCCCCCCTTTT---------------------------TTCTTCCEEECCSSCCCC--------------------
T ss_pred ECCCCcCCCCCHHHH---------------------------cCCCCCCEEEeeCCCCCC--------------------
Confidence 777777775444332 334566666666666552
Q ss_pred cCCCcchhcccCceEEEEecCCcccccCChhhhccCCCCeEEccCccccccCCchhhhcCcccccEEECCCCcCCccccC
Q 047927 612 SSIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSA 691 (1005)
Q Consensus 612 ~~~p~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~ 691 (1005)
+|..++..++.|++|++++|.+++..|..|..+++|+.|++++|.+++.. +..++ +|+.|++++|.+++.
T Consensus 138 --l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~--~L~~L~l~~n~l~~l--- 207 (597)
T 3oja_B 138 --LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIP--SLFHANVSYNLLSTL--- 207 (597)
T ss_dssp --CCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCT--TCSEEECCSSCCSEE---
T ss_pred --CCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhh--hhhhhhcccCccccc---
Confidence 11222223444555555555555555555666666666666666655431 22233 455555555555432
Q ss_pred ccCCCCCccEEeCCCCeecccCcccccCCCCCCEEECCCCcCCCCcchhhhcCCCCcEEecCCCcCCcccCCCCCCCCCC
Q 047927 692 TFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWP 771 (1005)
Q Consensus 692 ~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~ 771 (1005)
...++|++|++++|.+... .+.. .++|+.|+|++|.+++ +..+..++
T Consensus 208 --~~~~~L~~L~ls~n~l~~~------------------------~~~~---~~~L~~L~L~~n~l~~----~~~l~~l~ 254 (597)
T 3oja_B 208 --AIPIAVEELDASHNSINVV------------------------RGPV---NVELTILKLQHNNLTD----TAWLLNYP 254 (597)
T ss_dssp --ECCTTCSEEECCSSCCCEE------------------------ECSC---CSCCCEEECCSSCCCC----CGGGGGCT
T ss_pred --cCCchhheeeccCCccccc------------------------cccc---CCCCCEEECCCCCCCC----ChhhccCC
Confidence 1223455555555554432 2211 1344455555554443 23444555
Q ss_pred CccEEEccCCcccccCChHHHhhhhhhhhccCCchhhhchhhheecccccccccccEEEEEcchHHHHHHhcccceEEEC
Q 047927 772 MLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDF 851 (1005)
Q Consensus 772 ~L~~L~ls~N~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~L 851 (1005)
+|+.|++++|.+.+..|..+ ..+++|+.|+|
T Consensus 255 ~L~~L~Ls~N~l~~~~~~~~-------------------------------------------------~~l~~L~~L~L 285 (597)
T 3oja_B 255 GLVEVDLSYNELEKIMYHPF-------------------------------------------------VKMQRLERLYI 285 (597)
T ss_dssp TCSEEECCSSCCCEEESGGG-------------------------------------------------TTCSSCCEEEC
T ss_pred CCCEEECCCCccCCCCHHHh-------------------------------------------------cCccCCCEEEC
Confidence 55555555555555444322 13556777777
Q ss_pred CCCeeeccCcccccCCCCCCEEECCCCcCcccCchhhhcCCCCCEEeCCCCcCcccCcccccCCCCCCeEEccCCccccc
Q 047927 852 SRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLNLSYNHLVGR 931 (1005)
Q Consensus 852 s~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ 931 (1005)
++|++++ +|..++.+++|+.|+|++|.++ .+|..++.+++|+.|||++|++++.. +..++.|++|++++|+++|.
T Consensus 286 s~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~~ 360 (597)
T 3oja_B 286 SNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCN 360 (597)
T ss_dssp TTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHH
T ss_pred CCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCCCh
Confidence 7777776 5777788999999999999999 68989999999999999999998653 67788999999999999997
Q ss_pred CCCCCcccccccccccCCCCCCCCCC
Q 047927 932 IPTSTQLQSFLATSFEGNDRLWGPPL 957 (1005)
Q Consensus 932 ip~~~~~~~~~~~~~~gn~~lc~~~~ 957 (1005)
.+. ..+..+....+.+++..|+.+.
T Consensus 361 ~~~-~~~~~~~~~~~~~~~~~C~~~~ 385 (597)
T 3oja_B 361 SLR-ALFRNVARPAVDDADQHCKIDY 385 (597)
T ss_dssp HHH-HHTTTCCTTTBCCCCCCCCTTC
T ss_pred hHH-HHHHHHhhhccccccccCCcch
Confidence 543 2355666777889999998753
No 38
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.98 E-value=7.5e-31 Score=296.02 Aligned_cols=336 Identities=21% Similarity=0.209 Sum_probs=208.4
Q ss_pred CcCCCcEEECCCCcceeccchhHHHhcCCCCeEeccCCeeeEecCCcccccCcccceEEcCCccCcCCCCCCCCCceeEE
Q 047927 452 ELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRLAVVAGSSVYCFPPLLTTLSLASCKLSAIPNLRKQTKLYHL 531 (1005)
Q Consensus 452 ~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~l~~l~~l~~L~~L 531 (1005)
.+++++.|++++|.+. .+|...+..+++|++|++++|.+..++... +..+++|++|
T Consensus 43 ~l~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~-----------------------~~~l~~L~~L 98 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYA-----------------------FAYAHTIQKL 98 (390)
T ss_dssp GGCCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTT-----------------------TTTCTTCCEE
T ss_pred ccCCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhh-----------------------ccCCCCcCEE
Confidence 4578888888888876 677777888888888888888877665433 4555666777
Q ss_pred ECcCCcCCCCCChhhhhhcCCcccEEeCCCCcccCCCCCCccccCCcccEEEeccCcccccCCCCCCCcceeeCcCCcCc
Q 047927 532 DLSDNQISGEIPNWLWKIGKDSFNHLNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIPPLPPNAAYVDYSGNNFT 611 (1005)
Q Consensus 532 ~Ls~n~l~~~~p~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ls~n~~~ 611 (1005)
++++|.+.+..|..+ ..+++|++|++++|.++.
T Consensus 99 ~L~~n~l~~~~~~~~---------------------------~~l~~L~~L~L~~n~l~~-------------------- 131 (390)
T 3o6n_A 99 YMGFNAIRYLPPHVF---------------------------QNVPLLTVLVLERNDLSS-------------------- 131 (390)
T ss_dssp ECCSSCCCCCCTTTT---------------------------TTCTTCCEEECCSSCCCC--------------------
T ss_pred ECCCCCCCcCCHHHh---------------------------cCCCCCCEEECCCCccCc--------------------
Confidence 777776664443322 223445555555554431
Q ss_pred cCCCcchhcccCceEEEEecCCcccccCChhhhccCCCCeEEccCccccccCCchhhhcCcccccEEECCCCcCCccccC
Q 047927 612 SSIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSA 691 (1005)
Q Consensus 612 ~~~p~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~ 691 (1005)
+|..++..++.|++|++++|.+++..|..+..+++|+.|++++|++++. + +..++ +|+.|++++|.+++.
T Consensus 132 --l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~--~~~l~--~L~~L~l~~n~l~~~--- 201 (390)
T 3o6n_A 132 --LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-D--LSLIP--SLFHANVSYNLLSTL--- 201 (390)
T ss_dssp --CCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC-C--GGGCT--TCSEEECCSSCCSEE---
T ss_pred --CCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc-c--ccccc--ccceeeccccccccc---
Confidence 1112222234444444444444444455566666666666666666543 1 33333 566666666665542
Q ss_pred ccCCCCCccEEeCCCCeecccCcccccCCCCCCEEECCCCcCCCCcchhhhcCCCCcEEecCCCcCCcccCCCCCCCCCC
Q 047927 692 TFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWP 771 (1005)
Q Consensus 692 ~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~ 771 (1005)
...++|++|++++|.+... |.. ..++|+.|++++|.+++. .++..+++|++|++++|++.+.. |..+..
T Consensus 202 --~~~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~--~~~~~~-- 270 (390)
T 3o6n_A 202 --AIPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIM--YHPFVK-- 270 (390)
T ss_dssp --ECCSSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEE--SGGGTT--
T ss_pred --CCCCcceEEECCCCeeeec-ccc--ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcC--hhHccc--
Confidence 1223566666666665543 221 234556666666655542 34555555555555555444332 222222
Q ss_pred CccEEEccCCcccccCChHHHhhhhhhhhccCCchhhhchhhheecccccccccccEEEEEcchHHHHHHhcccceEEEC
Q 047927 772 MLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDF 851 (1005)
Q Consensus 772 ~L~~L~ls~N~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~L 851 (1005)
+++|+.|+|
T Consensus 271 -----------------------------------------------------------------------l~~L~~L~L 279 (390)
T 3o6n_A 271 -----------------------------------------------------------------------MQRLERLYI 279 (390)
T ss_dssp -----------------------------------------------------------------------CSSCCEEEC
T ss_pred -----------------------------------------------------------------------cccCCEEEC
Confidence 445666666
Q ss_pred CCCeeeccCcccccCCCCCCEEECCCCcCcccCchhhhcCCCCCEEeCCCCcCcccCcccccCCCCCCeEEccCCccccc
Q 047927 852 SRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLNLSYNHLVGR 931 (1005)
Q Consensus 852 s~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ 931 (1005)
++|++++ +|..++.+++|++|+|++|+++ .+|..++.+++|+.|+|++|++++. | +..+++|++|++++|+++|.
T Consensus 280 ~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~ 354 (390)
T 3o6n_A 280 SNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCN 354 (390)
T ss_dssp CSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHH
T ss_pred CCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccch
Confidence 6666664 4666678899999999999999 6788899999999999999999865 3 77889999999999999986
Q ss_pred CCCCCcccccccccccCCCCCCCCC
Q 047927 932 IPTSTQLQSFLATSFEGNDRLWGPP 956 (1005)
Q Consensus 932 ip~~~~~~~~~~~~~~gn~~lc~~~ 956 (1005)
... ..+..+....+.+++..|+.+
T Consensus 355 ~~~-~~~~~~~~~~~~~~~~~c~~~ 378 (390)
T 3o6n_A 355 SLR-ALFRNVARPAVDDADQHCKID 378 (390)
T ss_dssp HHH-HHTTTCCTTTBCCCCSCCCTT
T ss_pred hHH-HHHHHHHhhcccccCceeccc
Confidence 432 224445556677777777654
No 39
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.97 E-value=3.8e-30 Score=285.59 Aligned_cols=219 Identities=25% Similarity=0.316 Sum_probs=143.9
Q ss_pred hhccCCCCeEEccCccccccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCccEEeCCCCeecccCcccccCCCC
Q 047927 643 ICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSV 722 (1005)
Q Consensus 643 l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 722 (1005)
+..+++|+.|++++|.....++ .+..++ +|++|++++|.+.+..+ +..+++|++|++++|.+.+..+ +..+++
T Consensus 128 ~~~l~~L~~L~l~~n~~~~~~~-~~~~l~--~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~ 200 (347)
T 4fmz_A 128 LANLTKMYSLNLGANHNLSDLS-PLSNMT--GLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTS 200 (347)
T ss_dssp GTTCTTCCEEECTTCTTCCCCG-GGTTCT--TCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTT
T ss_pred hccCCceeEEECCCCCCccccc-chhhCC--CCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccccc--ccCCCc
Confidence 4445555555555554432222 244444 55556665555554433 5555666666666666654322 556666
Q ss_pred CCEEECCCCcCCCCcchhhhcCCCCcEEecCCCcCCcccCCCCCCCCCCCccEEEccCCcccccCChHHHhhhhhhhhcc
Q 047927 723 LEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDE 802 (1005)
Q Consensus 723 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~~~~~~p~~~~~~l~~~~~~~ 802 (1005)
|+.|++++|.+++..+ +..+++|++|++++|++++.. . +..+++|+.|++++|.+++. +.
T Consensus 201 L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~---~-~~~l~~L~~L~l~~n~l~~~-~~------------- 260 (347)
T 4fmz_A 201 LHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLS---P-LANLSQLTWLEIGTNQISDI-NA------------- 260 (347)
T ss_dssp CCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG---G-GTTCTTCCEEECCSSCCCCC-GG-------------
T ss_pred cceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCc---c-hhcCCCCCEEECCCCccCCC-hh-------------
Confidence 6666666666665444 566666666666666665432 1 55666677777777766542 10
Q ss_pred CCchhhhchhhheecccccccccccEEEEEcchHHHHHHhcccceEEECCCCeeeccCcccccCCCCCCEEECCCCcCcc
Q 047927 803 GRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTG 882 (1005)
Q Consensus 803 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g 882 (1005)
+..+++|+.|++++|++++. +.++.+++|+.|+|++|++++
T Consensus 261 -------------------------------------~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~ 301 (347)
T 4fmz_A 261 -------------------------------------VKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGN 301 (347)
T ss_dssp -------------------------------------GTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCG
T ss_pred -------------------------------------HhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCC
Confidence 01356778888888888764 357888999999999999998
Q ss_pred cCchhhhcCCCCCEEeCCCCcCcccCcccccCCCCCCeEEccCCccc
Q 047927 883 SIPSLIGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLNLSYNHLV 929 (1005)
Q Consensus 883 ~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~ 929 (1005)
..|..++.+++|+.|++++|++++..| +..+++|++||+++|+++
T Consensus 302 ~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 302 EDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp GGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred cChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 888889999999999999999998777 888999999999999875
No 40
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.97 E-value=7.4e-30 Score=287.91 Aligned_cols=349 Identities=18% Similarity=0.153 Sum_probs=176.8
Q ss_pred ccCCCCCCCCcc-cceeEECCCCCEEEEEcCCCCcccccCCCcccccccccceeecCCccCCCCCCCCc-ccCCCCCcEE
Q 047927 33 MVQWSQSNDCCT-WSGVDCDEAGRVIGLDLSEESISAGIDNSSSLFSLKYLQSLNLAFNMFNATEIPSG-LGNLTNLTTL 110 (1005)
Q Consensus 33 ~~~w~~~~~~c~-w~gv~c~~~~~v~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~lp~~-l~~l~~L~~L 110 (1005)
+++|..+.+||. |.++.|.. +.+.+......... ...-..++++++|+++++.+.. +|.. +..+++|++|
T Consensus 3 ~~~~~~~~~C~~~~~~~~c~~----~~~~i~~~~~~~~~--~~~~~~l~~l~~l~l~~~~l~~--l~~~~~~~l~~L~~L 74 (390)
T 3o6n_A 3 VKPRQPEYKCIDSNLQYDCVF----YDVHIDMQTQDVYF--GFEDITLNNQKIVTFKNSTMRK--LPAALLDSFRQVELL 74 (390)
T ss_dssp ----CCEECBCC------EEE----ESCEECSSCCCCEE--SCSSGGGCCCSEEEEESCEESE--ECTHHHHHCCCCSEE
T ss_pred cCCCCCccceehhhhhhccce----eeeeeecccccccc--cccccccCCceEEEecCCchhh--CChhHhcccccCcEE
Confidence 567988778875 44444421 11111111111101 1122356778888888877643 5654 5677888888
Q ss_pred EcccCCCcCCCcccccCCCCCcEEeCCCcccccCccccCCCChhhhhhcCccCceeecCCccCCCchhhHHHHHhccCCC
Q 047927 111 NLSNAGFAGQIPIQVSGMTRLVTLDLSGMYFVRAPLKLENPNLSGLLQNLAELRELYLDGVNISAPGIEWCQALSSLVPK 190 (1005)
Q Consensus 111 ~Ls~n~~~~~lp~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~ 190 (1005)
++++|.+.+..|..++++++|++|++++|.++..
T Consensus 75 ~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~---------------------------------------------- 108 (390)
T 3o6n_A 75 NLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYL---------------------------------------------- 108 (390)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCC----------------------------------------------
T ss_pred ECCCCcccccChhhccCCCCcCEEECCCCCCCcC----------------------------------------------
Confidence 8888877655555677777777777776654433
Q ss_pred ccEEEccCCCCCCCCCccccCCCCCcEEECCCCCCCCCcchhccCCCCCcEEEccCCCCCccCccccCCCCCCCEEeCCC
Q 047927 191 LQVLSLSGCFLSGPVDPSLSNLRSLSVIRLDMNDLYSPVPEFLADFSNLTSLYLSSCGLHGAFPEKILQLPTLETLDLSY 270 (1005)
Q Consensus 191 L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~ 270 (1005)
.|..++++++|++|++++|.+....+..|.++++|++|++++|.+++..|..+..+++|++|++++
T Consensus 109 --------------~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 174 (390)
T 3o6n_A 109 --------------PPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSS 174 (390)
T ss_dssp --------------CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCS
T ss_pred --------------CHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCC
Confidence 233334444444444444444332222234444444444444444443344444444444444444
Q ss_pred CCCCCCCCCcccCCCCCcEEEcccccccccCchhhccCCCCCEEeecCCccCCCCCccCCCCCCCcEEECcCCcCccCCC
Q 047927 271 NELLQGSLPDFHQNLSLETLILSATNFSGILPDSIKNLKNLSRVEFYLCNFNGPIPTSMSDLSQLVYLDMSFNHFSGPIP 350 (1005)
Q Consensus 271 n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 350 (1005)
|.+... .+..+++|+.|++++|.+++. ...++|++|++++|.+... |. ...++|+.|++++|.+.+. +
T Consensus 175 n~l~~~---~~~~l~~L~~L~l~~n~l~~~-----~~~~~L~~L~l~~n~l~~~-~~--~~~~~L~~L~l~~n~l~~~-~ 242 (390)
T 3o6n_A 175 NRLTHV---DLSLIPSLFHANVSYNLLSTL-----AIPIAVEELDASHNSINVV-RG--PVNVELTILKLQHNNLTDT-A 242 (390)
T ss_dssp SCCSBC---CGGGCTTCSEEECCSSCCSEE-----ECCSSCSEEECCSSCCCEE-EC--CCCSSCCEEECCSSCCCCC-G
T ss_pred CcCCcc---ccccccccceeeccccccccc-----CCCCcceEEECCCCeeeec-cc--cccccccEEECCCCCCccc-H
Confidence 443222 122234444444444443321 2223455555555544432 11 1134566666666665542 3
Q ss_pred cccccCcccEEECCCCcCcCCCCcccccccccccEEEcCCCcCCCccCccCCCCCCCCEEeCcCcccccccccccccccc
Q 047927 351 SLHMFRNLAYLDLSYNIFTGGISSIGWEQLLNLFHVDLSHNNLGGSIPQSLFELPMVQHLLLADNQFDGHVTEISNASSS 430 (1005)
Q Consensus 351 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ 430 (1005)
.+..+++|++|++++|.+++..+.. +..+++|++|++++|.++ .++..+..+++|++|++++|++.+....+ ..++
T Consensus 243 ~l~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--~~l~ 318 (390)
T 3o6n_A 243 WLLNYPGLVEVDLSYNELEKIMYHP-FVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLLHVERNQ--PQFD 318 (390)
T ss_dssp GGGGCTTCSEEECCSSCCCEEESGG-GTTCSSCCEEECCSSCCC-EEECSSSCCTTCCEEECCSSCCCCCGGGH--HHHT
T ss_pred HHcCCCCccEEECCCCcCCCcChhH-ccccccCCEEECCCCcCc-ccCcccCCCCCCCEEECCCCcceecCccc--cccC
Confidence 4444556666666666655444433 666666777777776666 34455556666666666666665332222 2345
Q ss_pred cCCEEeCCCCccCCCCCccccCcCCCcEEECCCCccee
Q 047927 431 LLDTLDLSDNNLEGPIPLSFFELKNLKILLLSSNKFVG 468 (1005)
Q Consensus 431 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 468 (1005)
+|++|++++|.++.. + +..+++|+.|++++|++.+
T Consensus 319 ~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 319 RLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDC 353 (390)
T ss_dssp TCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEH
T ss_pred cCCEEECCCCcccee-C--chhhccCCEEEcCCCCccc
Confidence 566666666666543 2 4556677777777777654
No 41
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.97 E-value=4.1e-31 Score=288.97 Aligned_cols=278 Identities=21% Similarity=0.296 Sum_probs=188.3
Q ss_pred CCcHHHHHHHHHHhhhCCCCCCCcccccCC----CCCCCCcccceeEECC---------CCCEEEEEcCCCCcccccCCC
Q 047927 7 QCQSDQQSLLLQMKSRLTFDSSVSFRMVQW----SQSNDCCTWSGVDCDE---------AGRVIGLDLSEESISAGIDNS 73 (1005)
Q Consensus 7 ~~~~~~~~~ll~~k~~~~~~~~~~~~~~~w----~~~~~~c~w~gv~c~~---------~~~v~~L~L~~~~l~~~~~~~ 73 (1005)
++..+|++||++||+++..|+. ++.++| ....++|.|.|+.|+. ..+|+.|+|+++.+. .+ +
T Consensus 23 ~~~~~~~~aLl~~k~~~~~~~~--~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~l--p 97 (328)
T 4fcg_A 23 TALRPYHDVLSQWQRHYNADRN--RWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QF--P 97 (328)
T ss_dssp CCCCCHHHHHHHHHHHHHHCCT--THHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SC--C
T ss_pred ccCchHHHHHHHHHHhccCCch--hhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hc--C
Confidence 4566899999999999966664 478899 3467899999999952 278999999999887 44 6
Q ss_pred cccccccccceeecCCccCCCCCCCCcccCCCCCcEEEcccCCCcCCCcccccCCCCCcEEeCCCccccc-CccccCCCC
Q 047927 74 SSLFSLKYLQSLNLAFNMFNATEIPSGLGNLTNLTTLNLSNAGFAGQIPIQVSGMTRLVTLDLSGMYFVR-APLKLENPN 152 (1005)
Q Consensus 74 ~~l~~l~~L~~L~Ls~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~l~~l~~L~~L~ls~n~~~~-~~~~~~~~~ 152 (1005)
..+.++++|++|+|++|.+. .+|..++.+++|++|++++|.+. .+|..++++++|++|++++|.+.. .|..
T Consensus 98 ~~l~~l~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~----- 169 (328)
T 4fcg_A 98 DQAFRLSHLQHMTIDAAGLM--ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEP----- 169 (328)
T ss_dssp SCGGGGTTCSEEEEESSCCC--CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSC-----
T ss_pred hhhhhCCCCCEEECCCCCcc--chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChh-----
Confidence 77888999999999999887 48888999999999999999887 888888889999999988865322 1110
Q ss_pred hhhhhhcCccCceeecCCccCCCchhhHHHHHhccCCCccEEEccCCCCCCCCCccccCCCCCcEEECCCCCCCCCcchh
Q 047927 153 LSGLLQNLAELRELYLDGVNISAPGIEWCQALSSLVPKLQVLSLSGCFLSGPVDPSLSNLRSLSVIRLDMNDLYSPVPEF 232 (1005)
Q Consensus 153 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~ 232 (1005)
+... ..+..+.++++|++|++++|.+. .+|..
T Consensus 170 --------------------------------------~~~~---------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~ 201 (328)
T 4fcg_A 170 --------------------------------------LAST---------DASGEHQGLVNLQSLRLEWTGIR-SLPAS 201 (328)
T ss_dssp --------------------------------------SEEE---------C-CCCEEESTTCCEEEEEEECCC-CCCGG
T ss_pred --------------------------------------Hhhc---------cchhhhccCCCCCEEECcCCCcC-cchHh
Confidence 0000 00112333455555555555443 44444
Q ss_pred ccCCCCCcEEEccCCCCCccCccccCCCCCCCEEeCCCCCCCCCCCCcccCCCCCcEEEcccccccccCchhhccCCCCC
Q 047927 233 LADFSNLTSLYLSSCGLHGAFPEKILQLPTLETLDLSYNELLQGSLPDFHQNLSLETLILSATNFSGILPDSIKNLKNLS 312 (1005)
Q Consensus 233 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 312 (1005)
++++++|++|++++|.+++ +|..++.+++|++|++++|.+.......+..+++|++|++++|.+.+.+|..+.++++|+
T Consensus 202 l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~ 280 (328)
T 4fcg_A 202 IANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLE 280 (328)
T ss_dssp GGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCC
T ss_pred hcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCC
Confidence 5555555555555555552 334455555555555555544333333344455555555555555667777777788888
Q ss_pred EEeecCCccCCCCCccCCCCCCCcEEECcCCcCc
Q 047927 313 RVEFYLCNFNGPIPTSMSDLSQLVYLDMSFNHFS 346 (1005)
Q Consensus 313 ~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~ 346 (1005)
+|++++|.+.+.+|..++++++|+.+++..+.+.
T Consensus 281 ~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 281 KLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp EEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred EEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 8888888777778877888888888777765443
No 42
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.97 E-value=1.3e-28 Score=273.32 Aligned_cols=307 Identities=24% Similarity=0.330 Sum_probs=142.5
Q ss_pred cccccccceeecCCccCCCCCCCCcccCCCCCcEEEcccCCCcCCCcccccCCCCCcEEeCCCcccccCccccCCCChhh
Q 047927 76 LFSLKYLQSLNLAFNMFNATEIPSGLGNLTNLTTLNLSNAGFAGQIPIQVSGMTRLVTLDLSGMYFVRAPLKLENPNLSG 155 (1005)
Q Consensus 76 l~~l~~L~~L~Ls~~~~~~~~lp~~l~~l~~L~~L~Ls~n~~~~~lp~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~ 155 (1005)
+..+++|++|+++++.+.. +| .+..+++|++|++++|.+. .+|. +.++++|++|++++|.++..+
T Consensus 40 ~~~l~~L~~L~l~~~~i~~--~~-~~~~~~~L~~L~l~~n~i~-~~~~-~~~l~~L~~L~L~~n~i~~~~---------- 104 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVAS--IQ-GIEYLTNLEYLNLNGNQIT-DISP-LSNLVKLTNLYIGTNKITDIS---------- 104 (347)
T ss_dssp HHHHTTCSEEECCSSCCCC--CT-TGGGCTTCCEEECCSSCCC-CCGG-GTTCTTCCEEECCSSCCCCCG----------
T ss_pred chhcccccEEEEeCCcccc--ch-hhhhcCCccEEEccCCccc-cchh-hhcCCcCCEEEccCCcccCch----------
Confidence 3455556666666555532 33 2555666666666666554 2333 555666666666665543321
Q ss_pred hhhcCccCceeecCCccCCCchhhHHHHHhccCCCccEEEccCCCCCCCCCccccCCCCCcEEECCCCCCCCCcchhccC
Q 047927 156 LLQNLAELRELYLDGVNISAPGIEWCQALSSLVPKLQVLSLSGCFLSGPVDPSLSNLRSLSVIRLDMNDLYSPVPEFLAD 235 (1005)
Q Consensus 156 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~ 235 (1005)
.+.++++|++|+++++.+..... +.. +++|++|++++|......+ .+..+++|++|++++|.+.+..+ +..
T Consensus 105 ~~~~l~~L~~L~l~~n~i~~~~~-----~~~-l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~ 175 (347)
T 4fmz_A 105 ALQNLTNLRELYLNEDNISDISP-----LAN-LTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IAN 175 (347)
T ss_dssp GGTTCTTCSEEECTTSCCCCCGG-----GTT-CTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGG
T ss_pred HHcCCCcCCEEECcCCcccCchh-----hcc-CCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hcc
Confidence 13334444444444433332211 111 1444444454443332222 24555555555555555443322 445
Q ss_pred CCCCcEEEccCCCCCccCccccCCCCCCCEEeCCCCCCCCCCCCcccCCCCCcEEEcccccccccCchhhccCCCCCEEe
Q 047927 236 FSNLTSLYLSSCGLHGAFPEKILQLPTLETLDLSYNELLQGSLPDFHQNLSLETLILSATNFSGILPDSIKNLKNLSRVE 315 (1005)
Q Consensus 236 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 315 (1005)
+++|++|++++|.+++..+ +..+++|++|++++|.+.. .+.+..+++|++|++++|.+++..+ +..+++|++|+
T Consensus 176 l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~--~~~~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~ 249 (347)
T 4fmz_A 176 LTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITD--ITPVANMTRLNSLKIGNNKITDLSP--LANLSQLTWLE 249 (347)
T ss_dssp CTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC--CGGGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEE
T ss_pred CCCCCEEEccCCccccccc--ccCCCccceeecccCCCCC--CchhhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEE
Confidence 5555555555555543221 4455555555555554322 1224444445555555544443322 44444555555
Q ss_pred ecCCccCCCCCccCCCCCCCcEEECcCCcCccCCCcccccCcccEEECCCCcCcCCCCcccccccccccEEEcCCCcCCC
Q 047927 316 FYLCNFNGPIPTSMSDLSQLVYLDMSFNHFSGPIPSLHMFRNLAYLDLSYNIFTGGISSIGWEQLLNLFHVDLSHNNLGG 395 (1005)
Q Consensus 316 l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~ 395 (1005)
+++|.+.+. ..+..+++|++|++++|.+.+. +. +..+++|++|++++|.+++
T Consensus 250 l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~-~~-------------------------~~~l~~L~~L~L~~n~l~~ 301 (347)
T 4fmz_A 250 IGTNQISDI--NAVKDLTKLKMLNVGSNQISDI-SV-------------------------LNNLSQLNSLFLNNNQLGN 301 (347)
T ss_dssp CCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC-GG-------------------------GGGCTTCSEEECCSSCCCG
T ss_pred CCCCccCCC--hhHhcCCCcCEEEccCCccCCC-hh-------------------------hcCCCCCCEEECcCCcCCC
Confidence 554444432 2344444444444444444432 22 4445555555555555554
Q ss_pred ccCccCCCCCCCCEEeCcCcccccccccccccccccCCEEeCCCCccC
Q 047927 396 SIPQSLFELPMVQHLLLADNQFDGHVTEISNASSSLLDTLDLSDNNLE 443 (1005)
Q Consensus 396 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~ 443 (1005)
..+..+..+++|++|++++|++++..+ ...+++|++|++++|.++
T Consensus 302 ~~~~~l~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 302 EDMEVIGGLTNLTTLFLSQNHITDIRP---LASLSKMDSADFANQVIK 346 (347)
T ss_dssp GGHHHHHTCTTCSEEECCSSSCCCCGG---GGGCTTCSEESSSCC---
T ss_pred cChhHhhccccCCEEEccCCccccccC---hhhhhccceeehhhhccc
Confidence 444445555555555555555544333 223455555555555543
No 43
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=7.4e-29 Score=295.25 Aligned_cols=347 Identities=18% Similarity=0.166 Sum_probs=179.2
Q ss_pred cccCCCCCCCCcc----cceeEECCCCCEEEEEcCCCCcccccCCCcccccccccceeecCCccCCCCCCCCc-ccCCCC
Q 047927 32 RMVQWSQSNDCCT----WSGVDCDEAGRVIGLDLSEESISAGIDNSSSLFSLKYLQSLNLAFNMFNATEIPSG-LGNLTN 106 (1005)
Q Consensus 32 ~~~~w~~~~~~c~----w~gv~c~~~~~v~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~lp~~-l~~l~~ 106 (1005)
.+++|..+.+||. |.++.|+. .++........ ...-..++++++|+++++.+.. +|.. +..+++
T Consensus 8 ~l~~~~~~~~C~~~~~~~~c~~~~~-----~i~~~~~~~~~----~~~~l~l~~l~~l~l~~~~l~~--lp~~~~~~l~~ 76 (597)
T 3oja_B 8 NVKPRQPEYKCIDSNLQYDCVFYDV-----HIDMQTQDVYF----GFEDITLNNQKIVTFKNSTMRK--LPAALLDSFRQ 76 (597)
T ss_dssp ---CCCSEECCCCC--CCSEEECSC-----EECSSCCCCEE----SCSSGGGCCCSEEEESSCEESE--ECTHHHHHCCC
T ss_pred cccCCCCCCcCcccCcCceeEecCc-----eeccccccccc----CcccccCCCceEEEeeCCCCCC--cCHHHHccCCC
Confidence 5778988778874 77766642 12222211111 1112246778888888887754 5543 567888
Q ss_pred CcEEEcccCCCcCCCcccccCCCCCcEEeCCCcccccCccccCCCChhhhhhcCccCceeecCCccCCCchhhHHHHHhc
Q 047927 107 LTTLNLSNAGFAGQIPIQVSGMTRLVTLDLSGMYFVRAPLKLENPNLSGLLQNLAELRELYLDGVNISAPGIEWCQALSS 186 (1005)
Q Consensus 107 L~~L~Ls~n~~~~~lp~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~ 186 (1005)
|++|++++|.+.+..|..++.+++|++|++++|.++..
T Consensus 77 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~------------------------------------------ 114 (597)
T 3oja_B 77 VELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYL------------------------------------------ 114 (597)
T ss_dssp CSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCC------------------------------------------
T ss_pred CcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCC------------------------------------------
Confidence 88888888887766666777777777777776654433
Q ss_pred cCCCccEEEccCCCCCCCCCccccCCCCCcEEECCCCCCCCCcchhccCCCCCcEEEccCCCCCccCccccCCCCCCCEE
Q 047927 187 LVPKLQVLSLSGCFLSGPVDPSLSNLRSLSVIRLDMNDLYSPVPEFLADFSNLTSLYLSSCGLHGAFPEKILQLPTLETL 266 (1005)
Q Consensus 187 l~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 266 (1005)
.|..|+++++|++|++++|.+.+..+..|+++++|++|++++|.+++..|..++.+++|++|
T Consensus 115 ------------------~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 176 (597)
T 3oja_B 115 ------------------PPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNL 176 (597)
T ss_dssp ------------------CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEE
T ss_pred ------------------CHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEE
Confidence 33334444444444444444443333334444444444444444444444444444444444
Q ss_pred eCCCCCCCCCCCCcccCCCCCcEEEcccccccccCchhhccCCCCCEEeecCCccCCCCCccCCCCCCCcEEECcCCcCc
Q 047927 267 DLSYNELLQGSLPDFHQNLSLETLILSATNFSGILPDSIKNLKNLSRVEFYLCNFNGPIPTSMSDLSQLVYLDMSFNHFS 346 (1005)
Q Consensus 267 ~Ls~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~ 346 (1005)
++++|.+... .+..+++|+.|++++|.+++. ...++|+.|++++|.+....+. + .++|+.|++++|.++
T Consensus 177 ~L~~N~l~~~---~~~~l~~L~~L~l~~n~l~~l-----~~~~~L~~L~ls~n~l~~~~~~-~--~~~L~~L~L~~n~l~ 245 (597)
T 3oja_B 177 QLSSNRLTHV---DLSLIPSLFHANVSYNLLSTL-----AIPIAVEELDASHNSINVVRGP-V--NVELTILKLQHNNLT 245 (597)
T ss_dssp ECTTSCCSBC---CGGGCTTCSEEECCSSCCSEE-----ECCTTCSEEECCSSCCCEEECS-C--CSCCCEEECCSSCCC
T ss_pred ECcCCCCCCc---ChhhhhhhhhhhcccCccccc-----cCCchhheeeccCCcccccccc-c--CCCCCEEECCCCCCC
Confidence 4444443222 122234444444444443321 2233455555555544322111 1 135556666666555
Q ss_pred cCCCcccccCcccEEECCCCcCcCCCCcccccccccccEEEcCCCcCCCccCccCCCCCCCCEEeCcCcccccccccccc
Q 047927 347 GPIPSLHMFRNLAYLDLSYNIFTGGISSIGWEQLLNLFHVDLSHNNLGGSIPQSLFELPMVQHLLLADNQFDGHVTEISN 426 (1005)
Q Consensus 347 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~ 426 (1005)
+. +.+..+++|++|++++|.+++.++.. +..+++|++|++++|.+++ +|..+..+++|+.|++++|.+.+....+
T Consensus 246 ~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~~i~~~~-- 320 (597)
T 3oja_B 246 DT-AWLLNYPGLVEVDLSYNELEKIMYHP-FVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLHVERNQ-- 320 (597)
T ss_dssp CC-GGGGGCTTCSEEECCSSCCCEEESGG-GTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCCCCGGGH--
T ss_pred CC-hhhccCCCCCEEECCCCccCCCCHHH-hcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCCccCccc--
Confidence 42 33444445555555555555444443 5566666666666666653 4444555566666666666555322221
Q ss_pred cccccCCEEeCCCCccCCCCCccccCcCCCcEEECCCCccee
Q 047927 427 ASSSLLDTLDLSDNNLEGPIPLSFFELKNLKILLLSSNKFVG 468 (1005)
Q Consensus 427 ~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 468 (1005)
..+++|+.|++++|.+++. + +..+++|+.|++++|++.+
T Consensus 321 ~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~ 359 (597)
T 3oja_B 321 PQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDC 359 (597)
T ss_dssp HHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEH
T ss_pred ccCCCCCEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCCC
Confidence 2345555666666655533 1 4455566666666666554
No 44
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=3.5e-29 Score=275.50 Aligned_cols=288 Identities=17% Similarity=0.205 Sum_probs=175.4
Q ss_pred cccEEEeccCcccccCCCCCCCcceeeCcCCcCccCCCcchhcccCceEEEEecCCcccccCChhhhccCCCCeEEccCc
Q 047927 578 SLSVLDLHSNQIQGKIPPLPPNAAYVDYSGNNFTSSIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYN 657 (1005)
Q Consensus 578 ~L~~L~l~~n~l~~~~~~~~~~l~~L~ls~n~~~~~~p~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N 657 (1005)
+++.++++++.++......+.+++.|++++|.+++..|..+. .++.|++|++++|.+++..|..+..+++|++|++++|
T Consensus 34 ~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 112 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFK-GLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN 112 (332)
T ss_dssp ETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTT-TCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS
T ss_pred cCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhh-CCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC
Confidence 466666666665532222334455555555555433333332 3566777777777777666777777777777777777
Q ss_pred cccccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCccEEeCCCCeec--ccCcccccCCCCCCEEECCCCcCCC
Q 047927 658 YLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLE--GMVPKSLANCSVLEILDLGNNQFDD 735 (1005)
Q Consensus 658 ~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~--~~~p~~l~~l~~L~~L~Ls~N~l~~ 735 (1005)
+++ .+|..+. + +|++|++++|++++..+..|..+++|++|++++|.++ +..|..+..+ +|+.|++++|++++
T Consensus 113 ~l~-~l~~~~~--~--~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~ 186 (332)
T 2ft3_A 113 HLV-EIPPNLP--S--SLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG 186 (332)
T ss_dssp CCC-SCCSSCC--T--TCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS
T ss_pred cCC-ccCcccc--c--cCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc
Confidence 776 4454443 2 6777777777777666666777777777777777774 3556666666 67777777777765
Q ss_pred CcchhhhcCCCCcEEecCCCcCCcccCCCCCCCCCCCccEEEccCCcccccCChHHHhhhhhhhhccCCchhhhchhhhe
Q 047927 736 TFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYR 815 (1005)
Q Consensus 736 ~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~ 815 (1005)
+|..+. ++|++|++++|++.+.. +..+..+++|+.|++++|++++..|..+
T Consensus 187 -l~~~~~--~~L~~L~l~~n~i~~~~--~~~l~~l~~L~~L~L~~N~l~~~~~~~~------------------------ 237 (332)
T 2ft3_A 187 -IPKDLP--ETLNELHLDHNKIQAIE--LEDLLRYSKLYRLGLGHNQIRMIENGSL------------------------ 237 (332)
T ss_dssp -CCSSSC--SSCSCCBCCSSCCCCCC--TTSSTTCTTCSCCBCCSSCCCCCCTTGG------------------------
T ss_pred -cCcccc--CCCCEEECCCCcCCccC--HHHhcCCCCCCEEECCCCcCCcCChhHh------------------------
Confidence 343332 56677777777766544 4566666677777777776665444211
Q ss_pred ecccccccccccEEEEEcchHHHHHHhcccceEEECCCCeeeccCcccccCCCCCCEEECCCCcCcccCchhhhcC----
Q 047927 816 FLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGNL---- 891 (1005)
Q Consensus 816 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l---- 891 (1005)
..++.|+.|+|++|+++ .+|..++.+++|++|+|++|++++..+..+...
T Consensus 238 -------------------------~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~ 291 (332)
T 2ft3_A 238 -------------------------SFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGV 291 (332)
T ss_dssp -------------------------GGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCS
T ss_pred -------------------------hCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHcccccccc
Confidence 12455666777777666 566666666677777777777665555555432
Q ss_pred --CCCCEEeCCCCcCc--ccCcccccCCCCCCeEEccCCc
Q 047927 892 --REIESLDLSMNNLS--GTIPAQLASLNFLSVLNLSYNH 927 (1005)
Q Consensus 892 --~~L~~LdLs~N~l~--~~ip~~l~~l~~L~~L~ls~N~ 927 (1005)
.+|+.|++++|.+. +..|..|..++.|+.+++++|+
T Consensus 292 ~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 292 KRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp SSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred ccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 45666677776665 5556666666666667666663
No 45
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=8e-29 Score=272.49 Aligned_cols=248 Identities=20% Similarity=0.232 Sum_probs=174.5
Q ss_pred CceEEEEecCCcccccCChhhhccCCCCeEEccCccccccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCccEE
Q 047927 623 SLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTL 702 (1005)
Q Consensus 623 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 702 (1005)
+.+++|++++|.+++..+..|.++++|++|++++|++++..|..+..++ +|++|++++|+++.. |..+. ++|++|
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~--~L~~L~Ls~n~l~~l-~~~~~--~~L~~L 126 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLV--KLERLYLSKNQLKEL-PEKMP--KTLQEL 126 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCT--TCCEEECCSSCCSBC-CSSCC--TTCCEE
T ss_pred CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCC--CCCEEECCCCcCCcc-Chhhc--ccccEE
Confidence 3455666666666666556677777777777777777766677777766 777777777777643 33332 577777
Q ss_pred eCCCCeecccCcccccCCCCCCEEECCCCcCCC--CcchhhhcCCCCcEEecCCCcCCcccCCCCCCCCCCCccEEEccC
Q 047927 703 DLNGNQLEGMVPKSLANCSVLEILDLGNNQFDD--TFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLAS 780 (1005)
Q Consensus 703 ~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~ 780 (1005)
++++|++++..+..|..+++|+.|++++|+++. ..+..+..+++|++|++++|++... |..+. ++|+.|++++
T Consensus 127 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l---~~~~~--~~L~~L~l~~ 201 (330)
T 1xku_A 127 RVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTI---PQGLP--PSLTELHLDG 201 (330)
T ss_dssp ECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSC---CSSCC--TTCSEEECTT
T ss_pred ECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccC---Ccccc--ccCCEEECCC
Confidence 777777777766777777777777777777753 5667777777777777777777642 43332 6777888888
Q ss_pred CcccccCChHHHhhhhhhhhccCCchhhhchhhheecccccccccccEEEEEcchHHHHHHhcccceEEECCCCeeeccC
Q 047927 781 NKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPI 860 (1005)
Q Consensus 781 N~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~i 860 (1005)
|++++..|..+ ..+++|+.|+|++|++++..
T Consensus 202 n~l~~~~~~~~-------------------------------------------------~~l~~L~~L~Ls~n~l~~~~ 232 (330)
T 1xku_A 202 NKITKVDAASL-------------------------------------------------KGLNNLAKLGLSFNSISAVD 232 (330)
T ss_dssp SCCCEECTGGG-------------------------------------------------TTCTTCCEEECCSSCCCEEC
T ss_pred CcCCccCHHHh-------------------------------------------------cCCCCCCEEECCCCcCceeC
Confidence 87776544322 13566777888888887777
Q ss_pred cccccCCCCCCEEECCCCcCcccCchhhhcCCCCCEEeCCCCcCcccCcccccCC------CCCCeEEccCCcccc
Q 047927 861 PEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLASL------NFLSVLNLSYNHLVG 930 (1005)
Q Consensus 861 p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l------~~L~~L~ls~N~l~g 930 (1005)
|..++.+++|++|+|++|+++ .+|..+..+++|++|++++|++++..+..|... ..++.+++++|++..
T Consensus 233 ~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~ 307 (330)
T 1xku_A 233 NGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY 307 (330)
T ss_dssp TTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCG
T ss_pred hhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccc
Confidence 777777888888888888887 677777788888888888888887766666433 667778888887753
No 46
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.96 E-value=2.7e-32 Score=316.04 Aligned_cols=245 Identities=19% Similarity=0.120 Sum_probs=148.1
Q ss_pred ChhhhccCCCCeEEccCccccccCCchhhh-----cCcccccEEECCCCcCCcc----ccCccCCCCCccEEeCCCCeec
Q 047927 640 PESICNATNLLVLDLSYNYLSGMIPTCLIN-----MSDSQLGVLNLRRNNLNGT----VSATFPANCSLRTLDLNGNQLE 710 (1005)
Q Consensus 640 p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~-----l~~~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~N~l~ 710 (1005)
+..+..+++|+.|++++|.+++..+..+.. .+ +|++|++++|.+++. ++..+..+++|++|++++|+++
T Consensus 163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~--~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 240 (461)
T 1z7x_W 163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPC--QLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLG 240 (461)
T ss_dssp HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCC--CCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCH
T ss_pred HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCC--CceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCC
Confidence 344555666667777666665443333322 22 566777777766653 3445556667777777777666
Q ss_pred ccC-----cccccCCCCCCEEECCCCcCCCC----cchhhhcCCCCcEEecCCCcCCcccC--CCCCC-CCCCCccEEEc
Q 047927 711 GMV-----PKSLANCSVLEILDLGNNQFDDT----FPCWVKNASRLHVLILRSNNFFGNIS--CPRYN-VSWPMLQIIDL 778 (1005)
Q Consensus 711 ~~~-----p~~l~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~~~--~~~~~-~~l~~L~~L~l 778 (1005)
+.. +..+..+++|++|++++|++++. ++..+..+++|++|++++|++.+... ....+ ...++|+.|++
T Consensus 241 ~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L 320 (461)
T 1z7x_W 241 DVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWV 320 (461)
T ss_dssp HHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEEC
T ss_pred hHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEc
Confidence 432 22233567777777777777654 45666667777777777776643210 00111 12357777777
Q ss_pred cCCcccccCChHHHhhhhhhhhccCCchhhhchhhheecccccccccccEEEEEcchHHHHHHhcccceEEECCCCeeec
Q 047927 779 ASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEG 858 (1005)
Q Consensus 779 s~N~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g 858 (1005)
++|.+++.....+. ..+..++.|+.|||++|++++
T Consensus 321 ~~n~l~~~~~~~l~---------------------------------------------~~l~~~~~L~~L~Ls~n~i~~ 355 (461)
T 1z7x_W 321 KSCSFTAACCSHFS---------------------------------------------SVLAQNRFLLELQISNNRLED 355 (461)
T ss_dssp TTSCCBGGGHHHHH---------------------------------------------HHHHHCSSCCEEECCSSBCHH
T ss_pred CCCCCchHHHHHHH---------------------------------------------HHHhhCCCccEEEccCCcccc
Confidence 77777654221111 111245677888888888876
Q ss_pred cCcccccC-----CCCCCEEECCCCcCcc----cCchhhhcCCCCCEEeCCCCcCcccCccccc-----CCCCCCeEEcc
Q 047927 859 PIPEEMGL-----LQSLCALNLSHNALTG----SIPSLIGNLREIESLDLSMNNLSGTIPAQLA-----SLNFLSVLNLS 924 (1005)
Q Consensus 859 ~ip~~~~~-----l~~L~~L~Ls~N~l~g----~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~-----~l~~L~~L~ls 924 (1005)
..+..+.. .++|++|+|++|++++ .+|..+..+++|++|||++|++++.-...+. ....|+.|++.
T Consensus 356 ~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~ 435 (461)
T 1z7x_W 356 AGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLY 435 (461)
T ss_dssp HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred ccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeec
Confidence 65554442 5688888888888886 7788888888888888888888765222221 23356666666
Q ss_pred CCccccc
Q 047927 925 YNHLVGR 931 (1005)
Q Consensus 925 ~N~l~g~ 931 (1005)
++.+...
T Consensus 436 ~~~~~~~ 442 (461)
T 1z7x_W 436 DIYWSEE 442 (461)
T ss_dssp TCCCCHH
T ss_pred ccccCHH
Confidence 6665543
No 47
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=8.6e-28 Score=264.23 Aligned_cols=290 Identities=15% Similarity=0.162 Sum_probs=209.9
Q ss_pred CcccEEEeccCcccccCCCCCCCcceeeCcCCcCccCCCcchhcccCceEEEEecCCcccccCChhhhccCCCCeEEccC
Q 047927 577 TSLSVLDLHSNQIQGKIPPLPPNAAYVDYSGNNFTSSIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVLDLSY 656 (1005)
Q Consensus 577 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~ls~n~~~~~~p~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~ 656 (1005)
.+++.++++++.++......++.++.|++++|++++..+..+. .++.|++|++++|.+++..|..+..+++|++|++++
T Consensus 31 c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 109 (330)
T 1xku_A 31 CHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFK-NLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 109 (330)
T ss_dssp EETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTT-TCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhc-cCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCC
Confidence 4688888888887754334566788888888887765444443 467788888888888877778888888888888888
Q ss_pred ccccccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCccEEeCCCCeecc--cCcccccCCCCCCEEECCCCcCC
Q 047927 657 NYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEG--MVPKSLANCSVLEILDLGNNQFD 734 (1005)
Q Consensus 657 N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~--~~p~~l~~l~~L~~L~Ls~N~l~ 734 (1005)
|+++ .+|..+. + +|++|++++|++++..+..|..+++|++|++++|.+.. ..+..+..+++|++|++++|+++
T Consensus 110 n~l~-~l~~~~~--~--~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~ 184 (330)
T 1xku_A 110 NQLK-ELPEKMP--K--TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT 184 (330)
T ss_dssp SCCS-BCCSSCC--T--TCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC
T ss_pred CcCC-ccChhhc--c--cccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc
Confidence 8877 4555443 3 78888888888887777777888888888888888753 66777888888888888888887
Q ss_pred CCcchhhhcCCCCcEEecCCCcCCcccCCCCCCCCCCCccEEEccCCcccccCChHHHhhhhhhhhccCCchhhhchhhh
Q 047927 735 DTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQY 814 (1005)
Q Consensus 735 ~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~ 814 (1005)
. +|..+. ++|++|++++|++.+.. |..+..+++|+.|++++|++++..|..+
T Consensus 185 ~-l~~~~~--~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~Ls~n~l~~~~~~~~----------------------- 236 (330)
T 1xku_A 185 T-IPQGLP--PSLTELHLDGNKITKVD--AASLKGLNNLAKLGLSFNSISAVDNGSL----------------------- 236 (330)
T ss_dssp S-CCSSCC--TTCSEEECTTSCCCEEC--TGGGTTCTTCCEEECCSSCCCEECTTTG-----------------------
T ss_pred c-CCcccc--ccCCEEECCCCcCCccC--HHHhcCCCCCCEEECCCCcCceeChhhc-----------------------
Confidence 5 444332 67888888888877654 6677778888888888888776544221
Q ss_pred eecccccccccccEEEEEcchHHHHHHhcccceEEECCCCeeeccCcccccCCCCCCEEECCCCcCcccCchhhhc----
Q 047927 815 RFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGN---- 890 (1005)
Q Consensus 815 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~---- 890 (1005)
..++.|+.|+|++|+++ .+|..+..+++|++|+|++|++++..+..+..
T Consensus 237 --------------------------~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~ 289 (330)
T 1xku_A 237 --------------------------ANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYN 289 (330)
T ss_dssp --------------------------GGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCC
T ss_pred --------------------------cCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccc
Confidence 13566788888888887 67777888888888888888888665555543
Q ss_pred --CCCCCEEeCCCCcCcc--cCcccccCCCCCCeEEccCCc
Q 047927 891 --LREIESLDLSMNNLSG--TIPAQLASLNFLSVLNLSYNH 927 (1005)
Q Consensus 891 --l~~L~~LdLs~N~l~~--~ip~~l~~l~~L~~L~ls~N~ 927 (1005)
...++.|++++|.+.. ..|..+..+..++.+++++|+
T Consensus 290 ~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 290 TKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp TTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred cccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 3677788888888753 556777778888888888774
No 48
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.96 E-value=3.8e-31 Score=306.35 Aligned_cols=240 Identities=21% Similarity=0.183 Sum_probs=192.2
Q ss_pred cCCCCeEEccCccccccC----CchhhhcCcccccEEECCCCcCCccccCccC-----CCCCccEEeCCCCeeccc----
Q 047927 646 ATNLLVLDLSYNYLSGMI----PTCLINMSDSQLGVLNLRRNNLNGTVSATFP-----ANCSLRTLDLNGNQLEGM---- 712 (1005)
Q Consensus 646 l~~L~~L~Ls~N~l~~~~----p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~-----~l~~L~~L~L~~N~l~~~---- 712 (1005)
.++|++|++++|++++.. +..+..++ +|++|++++|.+++..+..+. ..++|++|++++|.+++.
T Consensus 141 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~--~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 218 (461)
T 1z7x_W 141 QCRLEKLQLEYCSLSAASCEPLASVLRAKP--DFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRD 218 (461)
T ss_dssp TCCCCEEECTTSCCBGGGHHHHHHHHHHCT--TCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHH
T ss_pred CCcceEEECCCCCCCHHHHHHHHHHHhhCC--CCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHH
Confidence 567999999999998643 55666667 899999999999876554443 356999999999999974
Q ss_pred CcccccCCCCCCEEECCCCcCCCCc-----chhhhcCCCCcEEecCCCcCCccc--CCCCCCCCCCCccEEEccCCcccc
Q 047927 713 VPKSLANCSVLEILDLGNNQFDDTF-----PCWVKNASRLHVLILRSNNFFGNI--SCPRYNVSWPMLQIIDLASNKFSG 785 (1005)
Q Consensus 713 ~p~~l~~l~~L~~L~Ls~N~l~~~~-----p~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~~~l~~L~~L~ls~N~~~~ 785 (1005)
++..+..+++|++|++++|++++.. +..+..+++|++|++++|++++.- ..+..+..+++|+.||+++|++.+
T Consensus 219 l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~ 298 (461)
T 1z7x_W 219 LCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGD 298 (461)
T ss_dssp HHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHH
T ss_pred HHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCch
Confidence 5778889999999999999988643 334446899999999999987631 014556668999999999999875
Q ss_pred cCChHHHhhhhhhhhccCCchhhhchhhheecccccccccccEEEEEcchHHHHHHhcccceEEECCCCeeecc----Cc
Q 047927 786 RLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGP----IP 861 (1005)
Q Consensus 786 ~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~----ip 861 (1005)
..+..+...+ ....+.|+.|+|++|.+++. +|
T Consensus 299 ~~~~~l~~~l--------------------------------------------~~~~~~L~~L~L~~n~l~~~~~~~l~ 334 (461)
T 1z7x_W 299 EGARLLCETL--------------------------------------------LEPGCQLESLWVKSCSFTAACCSHFS 334 (461)
T ss_dssp HHHHHHHHHH--------------------------------------------TSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred HHHHHHHHHh--------------------------------------------ccCCccceeeEcCCCCCchHHHHHHH
Confidence 4333221100 01235799999999999976 67
Q ss_pred ccccCCCCCCEEECCCCcCcccCchhhhc-----CCCCCEEeCCCCcCcc----cCcccccCCCCCCeEEccCCccccc
Q 047927 862 EEMGLLQSLCALNLSHNALTGSIPSLIGN-----LREIESLDLSMNNLSG----TIPAQLASLNFLSVLNLSYNHLVGR 931 (1005)
Q Consensus 862 ~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~-----l~~L~~LdLs~N~l~~----~ip~~l~~l~~L~~L~ls~N~l~g~ 931 (1005)
..+..+++|++|||++|++++..+..+.. .++|+.|+|++|++++ .+|..+..+++|++||+++|++++.
T Consensus 335 ~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~ 413 (461)
T 1z7x_W 335 SVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA 413 (461)
T ss_dssp HHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred HHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHH
Confidence 77888999999999999999877776664 6799999999999997 8999999999999999999999865
No 49
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=5.5e-28 Score=265.92 Aligned_cols=266 Identities=17% Similarity=0.257 Sum_probs=191.3
Q ss_pred CcceeeCcCCcCccCCCcchhcccCceEEEEecCCcccccCChhhhccCCCCeEEccCccccccCCchhhhcCcccccEE
Q 047927 599 NAAYVDYSGNNFTSSIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVL 678 (1005)
Q Consensus 599 ~l~~L~ls~n~~~~~~p~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L 678 (1005)
.++.++++++.++ .+|..+ .+.+++|++++|.+++..|..|.++++|++|++++|++++..|..+..++ +|++|
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~--~L~~L 107 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLR--KLQKL 107 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCT--TCCEE
T ss_pred cCCEEECCCCCcc-ccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcC--CCCEE
Confidence 5677888887776 566554 35677788888888777777788888888888888888777777777776 78888
Q ss_pred ECCCCcCCccccCccCCCCCccEEeCCCCeecccCcccccCCCCCCEEECCCCcCC--CCcchhhhcCCCCcEEecCCCc
Q 047927 679 NLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFD--DTFPCWVKNASRLHVLILRSNN 756 (1005)
Q Consensus 679 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~--~~~p~~~~~l~~L~~L~L~~N~ 756 (1005)
++++|+++...+. +. ++|++|++++|++++..+..|..+++|+.|++++|+++ +..|..+..+ +|++|++++|+
T Consensus 108 ~L~~n~l~~l~~~-~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~ 183 (332)
T 2ft3_A 108 YISKNHLVEIPPN-LP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAK 183 (332)
T ss_dssp ECCSSCCCSCCSS-CC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSB
T ss_pred ECCCCcCCccCcc-cc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCC
Confidence 8888887744333 32 57888888888887766667777888888888888775 3666777777 77888888887
Q ss_pred CCcccCCCCCCCCCCCccEEEccCCcccccCChHHHhhhhhhhhccCCchhhhchhhheecccccccccccEEEEEcchH
Q 047927 757 FFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLE 836 (1005)
Q Consensus 757 l~~~~~~~~~~~~l~~L~~L~ls~N~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 836 (1005)
+++. |..+. ++|+.|++++|++++..|..+
T Consensus 184 l~~l---~~~~~--~~L~~L~l~~n~i~~~~~~~l--------------------------------------------- 213 (332)
T 2ft3_A 184 LTGI---PKDLP--ETLNELHLDHNKIQAIELEDL--------------------------------------------- 213 (332)
T ss_dssp CSSC---CSSSC--SSCSCCBCCSSCCCCCCTTSS---------------------------------------------
T ss_pred CCcc---Ccccc--CCCCEEECCCCcCCccCHHHh---------------------------------------------
Confidence 7652 44333 677777777777776544221
Q ss_pred HHHHHhcccceEEECCCCeeeccCcccccCCCCCCEEECCCCcCcccCchhhhcCCCCCEEeCCCCcCcccCcccccCC-
Q 047927 837 MKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLASL- 915 (1005)
Q Consensus 837 ~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l- 915 (1005)
..+++|+.|+|++|++++..|..++.+++|++|+|++|+++ .+|..++.+++|+.||+++|++++..+..|...
T Consensus 214 ----~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~ 288 (332)
T 2ft3_A 214 ----LRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVG 288 (332)
T ss_dssp ----TTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSS
T ss_pred ----cCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccc
Confidence 13456777777888777777777777777888888888777 677777777778888888887777666666543
Q ss_pred -----CCCCeEEccCCccc
Q 047927 916 -----NFLSVLNLSYNHLV 929 (1005)
Q Consensus 916 -----~~L~~L~ls~N~l~ 929 (1005)
..|+.+++++|++.
T Consensus 289 ~~~~~~~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 289 FGVKRAYYNGISLFNNPVP 307 (332)
T ss_dssp CCSSSCCBSEEECCSSSSC
T ss_pred cccccccccceEeecCccc
Confidence 45777777777776
No 50
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=2e-28 Score=271.95 Aligned_cols=258 Identities=18% Similarity=0.203 Sum_probs=215.6
Q ss_pred CceEEEEecCCcccccCChhhhccCCCCeEEccCccccccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCccEE
Q 047927 623 SLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTL 702 (1005)
Q Consensus 623 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 702 (1005)
+.+++|++++|.+++..+..+..+++|++|++++|++++..|..+..++ +|++|++++|++++..+..|..+++|++|
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~--~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 129 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLG--SLEHLDLSYNYLSNLSSSWFKPLSSLTFL 129 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCT--TCCEEECCSSCCSSCCHHHHTTCTTCSEE
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCC--CCCEEECCCCcCCcCCHhHhCCCccCCEE
Confidence 4677888888888877777888899999999999999887788888887 89999999999988777778889999999
Q ss_pred eCCCCeecccCc-ccccCCCCCCEEECCCC-cCCCCcchhhhcCCCCcEEecCCCcCCcccCCCCCCCCCCCccEEEccC
Q 047927 703 DLNGNQLEGMVP-KSLANCSVLEILDLGNN-QFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLAS 780 (1005)
Q Consensus 703 ~L~~N~l~~~~p-~~l~~l~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~ 780 (1005)
++++|++++..+ ..+..+++|++|++++| .+++..|..|+++++|++|++++|++.+.. |..+..+++|+.|++++
T Consensus 130 ~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~~l~~L~~L~l~~ 207 (353)
T 2z80_A 130 NLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYE--PKSLKSIQNVSHLILHM 207 (353)
T ss_dssp ECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEEC--TTTTTTCSEEEEEEEEC
T ss_pred ECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccC--HHHHhccccCCeecCCC
Confidence 999999986544 47889999999999998 577777788999999999999999998766 78888999999999999
Q ss_pred CcccccCChHHHhhhhhhhhccCCchhhhchhhheecccccccccccEEEEEcchHHHHHHhcccceEEECCCCeeeccC
Q 047927 781 NKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPI 860 (1005)
Q Consensus 781 N~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~i 860 (1005)
|++. .+|..+ ...+++|+.|++++|++++..
T Consensus 208 n~l~-~~~~~~------------------------------------------------~~~~~~L~~L~L~~n~l~~~~ 238 (353)
T 2z80_A 208 KQHI-LLLEIF------------------------------------------------VDVTSSVECLELRDTDLDTFH 238 (353)
T ss_dssp SCST-THHHHH------------------------------------------------HHHTTTEEEEEEESCBCTTCC
T ss_pred Cccc-cchhhh------------------------------------------------hhhcccccEEECCCCcccccc
Confidence 9874 333222 124678999999999999876
Q ss_pred ccccc---CCCCCCEEECCCCcCcc----cCchhhhcCCCCCEEeCCCCcCcccCccc-ccCCCCCCeEEccCCcccccC
Q 047927 861 PEEMG---LLQSLCALNLSHNALTG----SIPSLIGNLREIESLDLSMNNLSGTIPAQ-LASLNFLSVLNLSYNHLVGRI 932 (1005)
Q Consensus 861 p~~~~---~l~~L~~L~Ls~N~l~g----~ip~~~~~l~~L~~LdLs~N~l~~~ip~~-l~~l~~L~~L~ls~N~l~g~i 932 (1005)
+..+. ....++.++|++|.+++ .+|+.++++++|+.|||++|+++ .+|.. |.++++|++|++++|+++|.+
T Consensus 239 ~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~ 317 (353)
T 2z80_A 239 FSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSC 317 (353)
T ss_dssp CC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred ccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcC
Confidence 65543 46778999999999987 58999999999999999999999 55655 699999999999999999988
Q ss_pred CC
Q 047927 933 PT 934 (1005)
Q Consensus 933 p~ 934 (1005)
|.
T Consensus 318 ~~ 319 (353)
T 2z80_A 318 PR 319 (353)
T ss_dssp HH
T ss_pred CC
Confidence 74
No 51
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=1.8e-27 Score=258.77 Aligned_cols=233 Identities=23% Similarity=0.243 Sum_probs=160.7
Q ss_pred CCCCeEEccCccccccCCchhhhcCcccccEEECCCCcCCcc--ccCccCCCCCccEEeCCCCeecccCcccccCCCCCC
Q 047927 647 TNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGT--VSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLE 724 (1005)
Q Consensus 647 ~~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~ 724 (1005)
++|++|++++|+++...+..+..++ +|++|++++|+++.. .+..+..+++|++|++++|.+++ +|..+..+++|+
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~--~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~-l~~~~~~l~~L~ 104 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLT--QLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLE 104 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCT--TCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEE-EEEEEETCTTCC
T ss_pred CCCCEEECCCCccCccCHhHhhccc--cCCEEECCCCccCcccCcccccccccccCEEECCCCcccc-ChhhcCCCCCCC
Confidence 3555555555555533333344554 556666666555532 23344455566666666666663 445566666666
Q ss_pred EEECCCCcCCCCcc-hhhhcCCCCcEEecCCCcCCcccCCCCCCCCCCCccEEEccCCcccc-cCChHHHhhhhhhhhcc
Q 047927 725 ILDLGNNQFDDTFP-CWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSG-RLPQKWLLNLEAMMVDE 802 (1005)
Q Consensus 725 ~L~Ls~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~~~~-~~p~~~~~~l~~~~~~~ 802 (1005)
+|++++|++++..+ ..+..+++|++|++++|++.+.. +..+..+++|+.|++++|.+.+ .+|..+
T Consensus 105 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~----------- 171 (306)
T 2z66_A 105 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF--NGIFNGLSSLEVLKMAGNSFQENFLPDIF----------- 171 (306)
T ss_dssp EEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECS--TTTTTTCTTCCEEECTTCEEGGGEECSCC-----------
T ss_pred EEECCCCcccccccchhhhhccCCCEEECCCCcCCccc--hhhcccCcCCCEEECCCCccccccchhHH-----------
Confidence 66666666665444 45666666666666666665544 5556666667777777776654 233211
Q ss_pred CCchhhhchhhheecccccccccccEEEEEcchHHHHHHhcccceEEECCCCeeeccCcccccCCCCCCEEECCCCcCcc
Q 047927 803 GRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTG 882 (1005)
Q Consensus 803 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g 882 (1005)
..+++|+.|+|++|++++..|..++.+++|++|+|++|++++
T Consensus 172 --------------------------------------~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 213 (306)
T 2z66_A 172 --------------------------------------TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS 213 (306)
T ss_dssp --------------------------------------TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSB
T ss_pred --------------------------------------hhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCc
Confidence 135677888888888888888899999999999999999998
Q ss_pred cCchhhhcCCCCCEEeCCCCcCcccCcccccCCC-CCCeEEccCCcccccCC
Q 047927 883 SIPSLIGNLREIESLDLSMNNLSGTIPAQLASLN-FLSVLNLSYNHLVGRIP 933 (1005)
Q Consensus 883 ~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~-~L~~L~ls~N~l~g~ip 933 (1005)
..+..+..+++|+.|||++|++++.+|..+..++ +|++|++++|+++|.++
T Consensus 214 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~ 265 (306)
T 2z66_A 214 LDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 265 (306)
T ss_dssp CCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGG
T ss_pred cChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccC
Confidence 8787899999999999999999999999999984 89999999999998754
No 52
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.95 E-value=3.2e-29 Score=272.69 Aligned_cols=252 Identities=20% Similarity=0.204 Sum_probs=196.0
Q ss_pred cCceEEEEecCCcccccCChhhhccCCCCeEEccCccc-cccCCchhh-------hcCcccccEEECCCCcCCccccCcc
Q 047927 622 MSLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYL-SGMIPTCLI-------NMSDSQLGVLNLRRNNLNGTVSATF 693 (1005)
Q Consensus 622 ~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~~~p~~~~-------~l~~~~L~~L~L~~n~l~~~~~~~~ 693 (1005)
...++++++++|.+ .+|..+... |+.|++++|++ ...+|..+. .++ +|++|++++|++++..|..+
T Consensus 42 ~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~--~L~~L~L~~n~l~~~~~~~~ 115 (312)
T 1wwl_A 42 GRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGIS--GLQELTLENLEVTGTAPPPL 115 (312)
T ss_dssp EEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTS--CCCEEEEEEEBCBSCCCCCS
T ss_pred CCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcC--CccEEEccCCcccchhHHHH
Confidence 34455666666666 556655554 77778888877 345565554 455 78888888888887777765
Q ss_pred --CCCCCccEEeCCCCeecccCcccccCC-----CCCCEEECCCCcCCCCcchhhhcCCCCcEEecCCCcCCcccCCCCC
Q 047927 694 --PANCSLRTLDLNGNQLEGMVPKSLANC-----SVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRY 766 (1005)
Q Consensus 694 --~~l~~L~~L~L~~N~l~~~~p~~l~~l-----~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 766 (1005)
..+++|++|+|++|++++. |..+..+ ++|++|++++|++++..|..|+.+++|++|++++|++.+.+..+..
T Consensus 116 ~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 194 (312)
T 1wwl_A 116 LEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISA 194 (312)
T ss_dssp SSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHH
T ss_pred HHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHH
Confidence 7788888888888888876 7777766 8888888888888888888888888888888888888765322333
Q ss_pred C--CCCCCccEEEccCCcccccCChHHHhhhhhhhhccCCchhhhchhhheecccccccccccEEEEEcchHHHHHHhcc
Q 047927 767 N--VSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILN 844 (1005)
Q Consensus 767 ~--~~l~~L~~L~ls~N~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 844 (1005)
+ ..+++|+.|++++|++++. |.. ....+..++
T Consensus 195 ~~~~~l~~L~~L~L~~N~l~~~-~~~---------------------------------------------~~~~~~~l~ 228 (312)
T 1wwl_A 195 LCPLKFPTLQVLALRNAGMETP-SGV---------------------------------------------CSALAAARV 228 (312)
T ss_dssp SCTTSCTTCCEEECTTSCCCCH-HHH---------------------------------------------HHHHHHTTC
T ss_pred HHhccCCCCCEEECCCCcCcch-HHH---------------------------------------------HHHHHhcCC
Confidence 3 7888999999999988731 100 011123467
Q ss_pred cceEEECCCCeeeccCc-ccccCCCCCCEEECCCCcCcccCchhhhcCCCCCEEeCCCCcCcccCcccccCCCCCCeEEc
Q 047927 845 IFTSIDFSRNNFEGPIP-EEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLNL 923 (1005)
Q Consensus 845 ~l~~L~Ls~N~l~g~ip-~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~l 923 (1005)
+|+.|||++|++++.+| ..+..+++|++|+|++|+|+ .+|..+. ++|+.|||++|+|++. |. +..+++|++|++
T Consensus 229 ~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L 303 (312)
T 1wwl_A 229 QLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSL 303 (312)
T ss_dssp CCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEEC
T ss_pred CCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEec
Confidence 89999999999999886 56778999999999999999 8898887 8999999999999987 66 999999999999
Q ss_pred cCCccccc
Q 047927 924 SYNHLVGR 931 (1005)
Q Consensus 924 s~N~l~g~ 931 (1005)
++|++++.
T Consensus 304 ~~N~l~~~ 311 (312)
T 1wwl_A 304 KGNPFLDS 311 (312)
T ss_dssp TTCTTTCC
T ss_pred cCCCCCCC
Confidence 99999863
No 53
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=1.5e-27 Score=260.75 Aligned_cols=225 Identities=20% Similarity=0.192 Sum_probs=167.3
Q ss_pred CCCCeEEccCccccccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCccEEeCCCCeecccCcccccCCCCCCEE
Q 047927 647 TNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEIL 726 (1005)
Q Consensus 647 ~~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L 726 (1005)
+.++.|++++|.++ .+|..+..++ +|++|++++|.++ .+|..+..+++|++|+|++|+++ .+|..+..+++|++|
T Consensus 81 ~~l~~L~L~~n~l~-~lp~~l~~l~--~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L 155 (328)
T 4fcg_A 81 PGRVALELRSVPLP-QFPDQAFRLS--HLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLREL 155 (328)
T ss_dssp TTCCEEEEESSCCS-SCCSCGGGGT--TCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEE
T ss_pred cceeEEEccCCCch-hcChhhhhCC--CCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEE
Confidence 45566666666665 4555555555 5666666666666 55555666666666666666666 456666666666666
Q ss_pred ECCCCcCCCCcchhhhc---------CCCCcEEecCCCcCCcccCCCCCCCCCCCccEEEccCCcccccCChHHHhhhhh
Q 047927 727 DLGNNQFDDTFPCWVKN---------ASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEA 797 (1005)
Q Consensus 727 ~Ls~N~l~~~~p~~~~~---------l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~~~~~~p~~~~~~l~~ 797 (1005)
++++|++.+.+|..+.. +++|++|++++|+++ .+ |..+..+++|+.|++++|++++ +|..+
T Consensus 156 ~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~l--p~~l~~l~~L~~L~L~~N~l~~-l~~~l------ 225 (328)
T 4fcg_A 156 SIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SL--PASIANLQNLKSLKIRNSPLSA-LGPAI------ 225 (328)
T ss_dssp EEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CC--CGGGGGCTTCCEEEEESSCCCC-CCGGG------
T ss_pred ECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cc--hHhhcCCCCCCEEEccCCCCCc-Cchhh------
Confidence 66666666666655543 777777777777776 33 6667777777777777777774 33221
Q ss_pred hhhccCCchhhhchhhheecccccccccccEEEEEcchHHHHHHhcccceEEECCCCeeeccCcccccCCCCCCEEECCC
Q 047927 798 MMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSH 877 (1005)
Q Consensus 798 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~ 877 (1005)
..+++|+.|+|++|++.+.+|..++.+++|++|+|++
T Consensus 226 -------------------------------------------~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~ 262 (328)
T 4fcg_A 226 -------------------------------------------HHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKD 262 (328)
T ss_dssp -------------------------------------------GGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTT
T ss_pred -------------------------------------------ccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCC
Confidence 1357788899999999999999999999999999999
Q ss_pred CcCcccCchhhhcCCCCCEEeCCCCcCcccCcccccCCCCCCeEEccCCccc
Q 047927 878 NALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLNLSYNHLV 929 (1005)
Q Consensus 878 N~l~g~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~ 929 (1005)
|++.+.+|..++++++|+.|||++|++.+.+|+.+++|++|+.+++..|.+.
T Consensus 263 n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 263 CSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp CTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred CCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 9999999999999999999999999999999999999999999999987664
No 54
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=9.5e-27 Score=267.56 Aligned_cols=250 Identities=22% Similarity=0.207 Sum_probs=188.6
Q ss_pred EEEecCCcccccCChhhhccCCCCeEEccCccccccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCccEEeCCC
Q 047927 627 FFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNG 706 (1005)
Q Consensus 627 ~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 706 (1005)
.++.++..++ .+|..+ .++++.|+|++|++++..|..|..++ +|++|+|++|++++..+..|.++++|++|+|++
T Consensus 58 ~v~c~~~~l~-~iP~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~--~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 58 KVVCTRRGLS-EVPQGI--PSNTRYLNLMENNIQMIQADTFRHLH--HLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp EEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCEECTTTTTTCT--TCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred EEEECCCCcC-ccCCCC--CCCccEEECcCCcCceECHHHcCCCC--CCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 3444444444 234333 24677777777777766666677666 677777777777777677777777777777777
Q ss_pred CeecccCcccccCCCCCCEEECCCCcCCCCcchhhhcCCCCcEEecCCCcCCcccCCCCCCCCCCCccEEEccCCccccc
Q 047927 707 NQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGR 786 (1005)
Q Consensus 707 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~~~~~ 786 (1005)
|++++..+..|..+++|++|++++|+++...+..|.++++|++|++++|...+.+. +..+..+++|+.|++++|++++.
T Consensus 133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~-~~~~~~l~~L~~L~L~~n~l~~~ 211 (452)
T 3zyi_A 133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYIS-EGAFEGLFNLKYLNLGMCNIKDM 211 (452)
T ss_dssp SCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEEC-TTTTTTCTTCCEEECTTSCCSSC
T ss_pred CcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccC-hhhccCCCCCCEEECCCCccccc
Confidence 77776666667777777777777777776666677777777777777754444331 33566777788888888877642
Q ss_pred CChHHHhhhhhhhhccCCchhhhchhhheecccccccccccEEEEEcchHHHHHHhcccceEEECCCCeeeccCcccccC
Q 047927 787 LPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGL 866 (1005)
Q Consensus 787 ~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~ 866 (1005)
|. +..+++|+.|+|++|++++..|..|.+
T Consensus 212 -~~--------------------------------------------------~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 240 (452)
T 3zyi_A 212 -PN--------------------------------------------------LTPLVGLEELEMSGNHFPEIRPGSFHG 240 (452)
T ss_dssp -CC--------------------------------------------------CTTCTTCCEEECTTSCCSEECGGGGTT
T ss_pred -cc--------------------------------------------------ccccccccEEECcCCcCcccCcccccC
Confidence 31 013567899999999999999999999
Q ss_pred CCCCCEEECCCCcCcccCchhhhcCCCCCEEeCCCCcCcccCcccccCCCCCCeEEccCCcccccCC
Q 047927 867 LQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLNLSYNHLVGRIP 933 (1005)
Q Consensus 867 l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip 933 (1005)
+++|+.|+|++|++++..|..+..+++|+.|||++|++++..+..+..+++|+.|++++|++.|.+.
T Consensus 241 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~ 307 (452)
T 3zyi_A 241 LSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCD 307 (452)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTT
T ss_pred ccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCC
Confidence 9999999999999999999999999999999999999998888889999999999999999988754
No 55
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=3.4e-27 Score=253.55 Aligned_cols=210 Identities=25% Similarity=0.234 Sum_probs=130.5
Q ss_pred cccEEECCCCcCCccccCccCCCCCccEEeCCCCeecccCcccccCCCCCCEEECCCCc-CCCCcchhhhcCCCCcEEec
Q 047927 674 QLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQ-FDDTFPCWVKNASRLHVLIL 752 (1005)
Q Consensus 674 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~L 752 (1005)
+|++|++++|++++..+..|..+++|++|++++|.+++..|..|..+++|++|++++|+ ++...|..|..+++|++|++
T Consensus 33 ~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l 112 (285)
T 1ozn_A 33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL 112 (285)
T ss_dssp TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEEC
T ss_pred CceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEEC
Confidence 45555555555555544555555555555555555555555555555555555555554 44444555555555555555
Q ss_pred CCCcCCcccCCCCCCCCCCCccEEEccCCcccccCChHHHhhhhhhhhccCCchhhhchhhheecccccccccccEEEEE
Q 047927 753 RSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTI 832 (1005)
Q Consensus 753 ~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 832 (1005)
++|++.+.. |..+..+++|+.|++++|++++..+..+
T Consensus 113 ~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~----------------------------------------- 149 (285)
T 1ozn_A 113 DRCGLQELG--PGLFRGLAALQYLYLQDNALQALPDDTF----------------------------------------- 149 (285)
T ss_dssp TTSCCCCCC--TTTTTTCTTCCEEECCSSCCCCCCTTTT-----------------------------------------
T ss_pred CCCcCCEEC--HhHhhCCcCCCEEECCCCcccccCHhHh-----------------------------------------
Confidence 555555433 4445555555555555555553322111
Q ss_pred cchHHHHHHhcccceEEECCCCeeeccCcccccCCCCCCEEECCCCcCcccCchhhhcCCCCCEEeCCCCcCcccCcccc
Q 047927 833 KGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQL 912 (1005)
Q Consensus 833 ~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l 912 (1005)
..+++|+.|+|++|++++..+..+..+++|++|+|++|++++..|..++++++|+.||+++|++++..|..+
T Consensus 150 --------~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 221 (285)
T 1ozn_A 150 --------RDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEAL 221 (285)
T ss_dssp --------TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHH
T ss_pred --------ccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHc
Confidence 124556677777777776666667777888888888888887777778888888888888888887766777
Q ss_pred cCCCCCCeEEccCCcccccCCC
Q 047927 913 ASLNFLSVLNLSYNHLVGRIPT 934 (1005)
Q Consensus 913 ~~l~~L~~L~ls~N~l~g~ip~ 934 (1005)
..+++|++|++++|+++|.++.
T Consensus 222 ~~l~~L~~L~l~~N~~~c~~~~ 243 (285)
T 1ozn_A 222 APLRALQYLRLNDNPWVCDCRA 243 (285)
T ss_dssp TTCTTCCEEECCSSCEECSGGG
T ss_pred ccCcccCEEeccCCCccCCCCc
Confidence 7788888888888888776654
No 56
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=1.1e-26 Score=266.20 Aligned_cols=233 Identities=21% Similarity=0.214 Sum_probs=172.6
Q ss_pred CCCCeEEccCccccccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCccEEeCCCCeecccCcccccCCCCCCEE
Q 047927 647 TNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEIL 726 (1005)
Q Consensus 647 ~~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L 726 (1005)
++++.|+|++|++++..+..|..++ +|++|+|++|++++..+..|.++++|++|+|++|++++..+..|..+++|++|
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~--~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 141 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLR--HLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKEL 141 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCS--SCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEE
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCC--CCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCcee
Confidence 4566666666666655556666665 66666666666666666666666666666666666665555566666666666
Q ss_pred ECCCCcCCCCcchhhhcCCCCcEEecCCCcCCcccCCCCCCCCCCCccEEEccCCcccccCChHHHhhhhhhhhccCCch
Q 047927 727 DLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQ 806 (1005)
Q Consensus 727 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~~~~~~p~~~~~~l~~~~~~~~~~~ 806 (1005)
++++|+++...+..|.++++|++|++++|+..+.+. +..+..+++|+.|++++|+++. +|.
T Consensus 142 ~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~-~~~~~~l~~L~~L~L~~n~l~~-~~~----------------- 202 (440)
T 3zyj_A 142 WLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYIS-EGAFEGLSNLRYLNLAMCNLRE-IPN----------------- 202 (440)
T ss_dssp ECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEEC-TTTTTTCSSCCEEECTTSCCSS-CCC-----------------
T ss_pred eCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeC-cchhhcccccCeecCCCCcCcc-ccc-----------------
Confidence 666666666666666666677777776644433331 3355667777777777777652 231
Q ss_pred hhhchhhheecccccccccccEEEEEcchHHHHHHhcccceEEECCCCeeeccCcccccCCCCCCEEECCCCcCcccCch
Q 047927 807 SELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPS 886 (1005)
Q Consensus 807 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~ 886 (1005)
+..+++|+.|||++|++++..|..|.++++|+.|+|++|++++..|.
T Consensus 203 ---------------------------------~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 249 (440)
T 3zyj_A 203 ---------------------------------LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERN 249 (440)
T ss_dssp ---------------------------------CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTT
T ss_pred ---------------------------------cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChh
Confidence 01356788999999999998899999999999999999999999999
Q ss_pred hhhcCCCCCEEeCCCCcCcccCcccccCCCCCCeEEccCCcccccCC
Q 047927 887 LIGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLNLSYNHLVGRIP 933 (1005)
Q Consensus 887 ~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip 933 (1005)
.|.++++|+.|||++|++++..+..+..+++|+.|+|++|++.|.+.
T Consensus 250 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~ 296 (440)
T 3zyj_A 250 AFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCD 296 (440)
T ss_dssp SSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSST
T ss_pred hhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCC
Confidence 99999999999999999998888889999999999999999988654
No 57
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.94 E-value=6.2e-27 Score=254.49 Aligned_cols=259 Identities=22% Similarity=0.215 Sum_probs=193.2
Q ss_pred CceEEEEecCCcccccCChhhhccCCCCeEEccCccccc--cCCchhhhcCcccccEEECCCCcCCccccCccCCCCCcc
Q 047927 623 SLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSG--MIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLR 700 (1005)
Q Consensus 623 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 700 (1005)
+.+++|++++|.++...+..|..+++|++|++++|+++. ..|..+..++ +|++|++++|.+.+ +|..+..+++|+
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~--~L~~L~Ls~n~i~~-l~~~~~~l~~L~ 104 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTT--SLKYLDLSFNGVIT-MSSNFLGLEQLE 104 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCS--CCCEEECCSCSEEE-EEEEEETCTTCC
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCccccccccc--ccCEEECCCCcccc-ChhhcCCCCCCC
Confidence 345556666666664444456777778888888887763 2355566665 78888888887774 444577778888
Q ss_pred EEeCCCCeecccCc-ccccCCCCCCEEECCCCcCCCCcchhhhcCCCCcEEecCCCcCCc-ccCCCCCCCCCCCccEEEc
Q 047927 701 TLDLNGNQLEGMVP-KSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFG-NISCPRYNVSWPMLQIIDL 778 (1005)
Q Consensus 701 ~L~L~~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~~~l~~L~~L~l 778 (1005)
+|++++|++++..+ ..+..+++|++|++++|++++..|..+..+++|++|++++|++.+ .+ |..+..+++|+.|++
T Consensus 105 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~~l~~L~~L~L 182 (306)
T 2z66_A 105 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL--PDIFTELRNLTFLDL 182 (306)
T ss_dssp EEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEE--CSCCTTCTTCCEEEC
T ss_pred EEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccc--hhHHhhCcCCCEEEC
Confidence 88888888886654 577888888888888888887788888888888888888888775 33 677788888888888
Q ss_pred cCCcccccCChHHHhhhhhhhhccCCchhhhchhhheecccccccccccEEEEEcchHHHHHHhcccceEEECCCCeeec
Q 047927 779 ASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEG 858 (1005)
Q Consensus 779 s~N~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g 858 (1005)
++|++++..|..+ ..+++|+.|+|++|++++
T Consensus 183 s~n~l~~~~~~~~-------------------------------------------------~~l~~L~~L~L~~N~l~~ 213 (306)
T 2z66_A 183 SQCQLEQLSPTAF-------------------------------------------------NSLSSLQVLNMSHNNFFS 213 (306)
T ss_dssp TTSCCCEECTTTT-------------------------------------------------TTCTTCCEEECTTSCCSB
T ss_pred CCCCcCCcCHHHh-------------------------------------------------cCCCCCCEEECCCCccCc
Confidence 8888876555322 135678889999999988
Q ss_pred cCcccccCCCCCCEEECCCCcCcccCchhhhcC-CCCCEEeCCCCcCcccCc--ccccCCCCCCeEEccCCcccccCCCC
Q 047927 859 PIPEEMGLLQSLCALNLSHNALTGSIPSLIGNL-REIESLDLSMNNLSGTIP--AQLASLNFLSVLNLSYNHLVGRIPTS 935 (1005)
Q Consensus 859 ~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l-~~L~~LdLs~N~l~~~ip--~~l~~l~~L~~L~ls~N~l~g~ip~~ 935 (1005)
..+..++.+++|++|||++|++++.+|..+..+ ++|++|||++|.+++..+ .-...+...+.+.+..+++.|..|..
T Consensus 214 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~ 293 (306)
T 2z66_A 214 LDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSD 293 (306)
T ss_dssp CCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGG
T ss_pred cChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCchh
Confidence 777788999999999999999999999989888 489999999999987643 11223344556677788888888864
No 58
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.94 E-value=2.1e-29 Score=301.61 Aligned_cols=438 Identities=16% Similarity=0.109 Sum_probs=289.2
Q ss_pred CCCcccceeEECCCCCEEEEEcCCCCcccccCCCcccccccccceeecCCccCCC--CCCCCccc------------CCC
Q 047927 40 NDCCTWSGVDCDEAGRVIGLDLSEESISAGIDNSSSLFSLKYLQSLNLAFNMFNA--TEIPSGLG------------NLT 105 (1005)
Q Consensus 40 ~~~c~w~gv~c~~~~~v~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~Ls~~~~~~--~~lp~~l~------------~l~ 105 (1005)
.-|++|.++.+.... .+.+..+ ..... ...+.++++|++|+|+++.... ..+|..++ .++
T Consensus 39 ~vck~W~~~~~~~~~---~l~~~~~-~~~~~--~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 112 (592)
T 3ogk_B 39 LVCRRWFKIDSETRE---HVTMALC-YTATP--DRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLR 112 (592)
T ss_dssp TSCHHHHHHHHHHCC---EEEESCG-GGSCH--HHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCT
T ss_pred HHhHHHHHhhhcccc---EEEEeec-cccCh--HHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCC
Confidence 345689998643222 2333322 11111 3446688999999998753210 11333333 789
Q ss_pred CCcEEEcccCCCcCCCcccccCC--CCCcEEeCCCcccccCccccCCCChhhhhhcCccCceeecCCccCCCchhhHHHH
Q 047927 106 NLTTLNLSNAGFAGQIPIQVSGM--TRLVTLDLSGMYFVRAPLKLENPNLSGLLQNLAELRELYLDGVNISAPGIEWCQA 183 (1005)
Q Consensus 106 ~L~~L~Ls~n~~~~~lp~~l~~l--~~L~~L~ls~n~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 183 (1005)
+|++|+|++|.+.+..+..+++. .+|++|++++|.- .....+.....++++|++|+++++.+.+.+..|+..
T Consensus 113 ~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~------~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~ 186 (592)
T 3ogk_B 113 QLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSG------FTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHE 186 (592)
T ss_dssp TCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEE------EEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHH
T ss_pred CCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCC------cCHHHHHHHHhhCCCCCEEECccccccCcchhHHHH
Confidence 99999999998877767667663 4499999998751 111223445668999999999999988887777777
Q ss_pred HhccCCCccEEEccCCCCCCC----CCccccCCCCCcEEECCCCCCCCCcchhccCCCCCcEEEccCCCCC---ccCccc
Q 047927 184 LSSLVPKLQVLSLSGCFLSGP----VDPSLSNLRSLSVIRLDMNDLYSPVPEFLADFSNLTSLYLSSCGLH---GAFPEK 256 (1005)
Q Consensus 184 l~~l~~~L~~L~L~~n~~~~~----~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~---~~~p~~ 256 (1005)
+...+++|++|++++|.+++. ++..+.++++|++|++++|.+.+ +|..+..+++|++|+++.+... ...+..
T Consensus 187 ~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 265 (592)
T 3ogk_B 187 LAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMN 265 (592)
T ss_dssp HHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSC
T ss_pred HHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHH
Confidence 766669999999999988743 33345678999999999988765 6778888999999999864332 344556
Q ss_pred cCCCCCCCEEeCCCCCCCCCCCCc-ccCCCCCcEEEcccccccccCc-hhhccCCCCCEEeecCCccCCCCCccCCCCCC
Q 047927 257 ILQLPTLETLDLSYNELLQGSLPD-FHQNLSLETLILSATNFSGILP-DSIKNLKNLSRVEFYLCNFNGPIPTSMSDLSQ 334 (1005)
Q Consensus 257 l~~l~~L~~L~Ls~n~~~~~~~~~-~~~~~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~ 334 (1005)
+..+++|+.|+++++. ...++. +..+++|++|++++|.+++... ..+..+++|++|+++++...+.++.....+++
T Consensus 266 l~~~~~L~~L~l~~~~--~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~ 343 (592)
T 3ogk_B 266 LVFPRKLCRLGLSYMG--PNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQ 343 (592)
T ss_dssp CCCCTTCCEEEETTCC--TTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTT
T ss_pred hhccccccccCccccc--hhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCC
Confidence 7788899999998753 344444 3458889999999988765433 44678899999998843322223333456788
Q ss_pred CcEEECcC-----------CcCccC-CCc-ccccCcccEEECCCCcCcCCCCccccc-ccccccEEEcC----CCcCCCc
Q 047927 335 LVYLDMSF-----------NHFSGP-IPS-LHMFRNLAYLDLSYNIFTGGISSIGWE-QLLNLFHVDLS----HNNLGGS 396 (1005)
Q Consensus 335 L~~L~L~~-----------n~l~~~-~~~-~~~~~~L~~L~L~~n~l~~~~~~~~~~-~l~~L~~L~L~----~n~l~~~ 396 (1005)
|++|++++ +.+++. +.. ...+++|++|+++.+.+++..... +. .+++|++|+++ .|.+++.
T Consensus 344 L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~-l~~~~~~L~~L~l~~~~~~n~l~~~ 422 (592)
T 3ogk_B 344 LKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLES-IGTYLKNLCDFRLVLLDREERITDL 422 (592)
T ss_dssp CCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHH-HHHHCCSCCEEEEEECSCCSCCSSC
T ss_pred CCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHH-HHhhCCCCcEEEEeecCCCccccCc
Confidence 99999883 344321 111 234668888888777776544443 33 37788888885 5556542
Q ss_pred -----cCccCCCCCCCCEEeCcCcc--cccccccccccccccCCEEeCCCCccCCC-CCccccCcCCCcEEECCCCccee
Q 047927 397 -----IPQSLFELPMVQHLLLADNQ--FDGHVTEISNASSSLLDTLDLSDNNLEGP-IPLSFFELKNLKILLLSSNKFVG 468 (1005)
Q Consensus 397 -----~~~~l~~l~~L~~L~l~~n~--l~~~~~~~~~~~~~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~ 468 (1005)
++..+..+++|++|+++.|. +++.........+++|++|++++|.+++. ++..+..+++|++|++++|++++
T Consensus 423 p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~ 502 (592)
T 3ogk_B 423 PLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSE 502 (592)
T ss_dssp CCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBH
T ss_pred hHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcH
Confidence 22335567788888886543 44433333334456777777777777653 23344567777777777777654
Q ss_pred ccchhHHHhcCCCCeEeccCCeeeE
Q 047927 469 TIELDAIQRLRNLFRLDLSYNRLAV 493 (1005)
Q Consensus 469 ~~~~~~l~~l~~L~~L~l~~n~l~~ 493 (1005)
.........+++|++|++++|+++.
T Consensus 503 ~~~~~~~~~l~~L~~L~ls~n~it~ 527 (592)
T 3ogk_B 503 RAIAAAVTKLPSLRYLWVQGYRASM 527 (592)
T ss_dssp HHHHHHHHHCSSCCEEEEESCBCCT
T ss_pred HHHHHHHHhcCccCeeECcCCcCCH
Confidence 4334445667777777777777543
No 59
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=1.8e-26 Score=247.83 Aligned_cols=253 Identities=20% Similarity=0.202 Sum_probs=191.8
Q ss_pred EEEEecCCcccccCChhhhccCCCCeEEccCccccccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCccEEeCC
Q 047927 626 IFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLN 705 (1005)
Q Consensus 626 ~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 705 (1005)
..++.+++.++. +|..+ .++|+.|++++|.+++..+..+..++ +|++|++++|.+++..+..|..+++|++|+++
T Consensus 14 ~~~~c~~~~l~~-ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~--~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 88 (285)
T 1ozn_A 14 VTTSCPQQGLQA-VPVGI--PAASQRIFLHGNRISHVPAASFRACR--NLTILWLHSNVLARIDAAAFTGLALLEQLDLS 88 (285)
T ss_dssp CEEECCSSCCSS-CCTTC--CTTCSEEECTTSCCCEECTTTTTTCT--TCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred eEEEcCcCCccc-CCcCC--CCCceEEEeeCCcCCccCHHHcccCC--CCCEEECCCCccceeCHhhcCCccCCCEEeCC
Confidence 345555655553 34332 45777888888887766666777776 78888888888877777777778888888888
Q ss_pred CCe-ecccCcccccCCCCCCEEECCCCcCCCCcchhhhcCCCCcEEecCCCcCCcccCCCCCCCCCCCccEEEccCCccc
Q 047927 706 GNQ-LEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFS 784 (1005)
Q Consensus 706 ~N~-l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~~~ 784 (1005)
+|+ +....|..|..+++|++|++++|++++..|..|.++++|++|++++|++.+.. +..+..+++|+.|++++|+++
T Consensus 89 ~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~ 166 (285)
T 1ozn_A 89 DNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALP--DDTFRDLGNLTHLFLHGNRIS 166 (285)
T ss_dssp SCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC--TTTTTTCTTCCEEECCSSCCC
T ss_pred CCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccC--HhHhccCCCccEEECCCCccc
Confidence 886 77666777888888888888888888777777888888888888888877543 455677888888888888877
Q ss_pred ccCChHHHhhhhhhhhccCCchhhhchhhheecccccccccccEEEEEcchHHHHHHhcccceEEECCCCeeeccCcccc
Q 047927 785 GRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEM 864 (1005)
Q Consensus 785 ~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~ 864 (1005)
+..+..+ ..++.|+.|++++|++++..|..+
T Consensus 167 ~~~~~~~-------------------------------------------------~~l~~L~~L~l~~n~l~~~~~~~~ 197 (285)
T 1ozn_A 167 SVPERAF-------------------------------------------------RGLHSLDRLLLHQNRVAHVHPHAF 197 (285)
T ss_dssp EECTTTT-------------------------------------------------TTCTTCCEEECCSSCCCEECTTTT
T ss_pred ccCHHHh-------------------------------------------------cCccccCEEECCCCcccccCHhHc
Confidence 5333211 135778899999999999999999
Q ss_pred cCCCCCCEEECCCCcCcccCchhhhcCCCCCEEeCCCCcCcccCcccccCCCCCCeEEccCCcccccCCCC
Q 047927 865 GLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLNLSYNHLVGRIPTS 935 (1005)
Q Consensus 865 ~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~ 935 (1005)
+.+++|+.|+|++|++++..|..+..+++|+.|++++|.+++..+.. .-...++.++.+.|.+.|..|..
T Consensus 198 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~ 267 (285)
T 1ozn_A 198 RDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQR 267 (285)
T ss_dssp TTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESGG
T ss_pred cCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHHHHHhcccccCccccCCchH
Confidence 99999999999999999877788999999999999999998765532 11123455668889999999864
No 60
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=1.3e-27 Score=260.63 Aligned_cols=250 Identities=20% Similarity=0.152 Sum_probs=149.5
Q ss_pred hhcccCceEEEEecCCcccccCChhhhccCCCCeEEccCccccccCCchhhhcCcccccEEECCCCcCCccccCccCCCC
Q 047927 618 IGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANC 697 (1005)
Q Consensus 618 ~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~ 697 (1005)
++..++.+++|++++|.+++..|..+..+++|++|++++|++++..+ +..++ +|++|++++|++++..+ .+
T Consensus 29 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~--~L~~L~Ls~n~l~~l~~-----~~ 99 (317)
T 3o53_A 29 LRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLS--TLRTLDLNNNYVQELLV-----GP 99 (317)
T ss_dssp HHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCT--TCCEEECCSSEEEEEEE-----CT
T ss_pred HhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcC--CCCEEECcCCccccccC-----CC
Confidence 33345566666666666666666666666777777777776665443 55555 66666776666665432 25
Q ss_pred CccEEeCCCCeecccCcccccCCCCCCEEECCCCcCCCCcchhhhcCCCCcEEecCCCcCCcccCCCCCC-CCCCCccEE
Q 047927 698 SLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYN-VSWPMLQII 776 (1005)
Q Consensus 698 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~-~~l~~L~~L 776 (1005)
+|++|++++|++++..+.. +++|++|++++|++++..|..++.+++|++|++++|++.+.. +..+ ..+++|+.|
T Consensus 100 ~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~--~~~~~~~l~~L~~L 174 (317)
T 3o53_A 100 SIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN--FAELAASSDTLEHL 174 (317)
T ss_dssp TCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEE--GGGGGGGTTTCCEE
T ss_pred CcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCccc--HHHHhhccCcCCEE
Confidence 6666666666666554433 455666666666666666666666666666666666665543 3333 245666666
Q ss_pred EccCCcccccCChHHHhhhhhhhhccCCchhhhchhhheecccccccccccEEEEEcchHHHHHHhcccceEEECCCCee
Q 047927 777 DLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNF 856 (1005)
Q Consensus 777 ~ls~N~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l 856 (1005)
++++|++++..+. ..++.|+.|+|++|++
T Consensus 175 ~L~~N~l~~~~~~---------------------------------------------------~~l~~L~~L~Ls~N~l 203 (317)
T 3o53_A 175 NLQYNFIYDVKGQ---------------------------------------------------VVFAKLKTLDLSSNKL 203 (317)
T ss_dssp ECTTSCCCEEECC---------------------------------------------------CCCTTCCEEECCSSCC
T ss_pred ECCCCcCcccccc---------------------------------------------------cccccCCEEECCCCcC
Confidence 6666665532110 0134566666666666
Q ss_pred eccCcccccCCCCCCEEECCCCcCcccCchhhhcCCCCCEEeCCCCcCc-ccCcccccCCCCCCeEEcc-CCcccccCCC
Q 047927 857 EGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLS-GTIPAQLASLNFLSVLNLS-YNHLVGRIPT 934 (1005)
Q Consensus 857 ~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~-~~ip~~l~~l~~L~~L~ls-~N~l~g~ip~ 934 (1005)
++. |..+..+++|++|+|++|+++ .+|..+..+++|+.|++++|.++ +.+|..+..++.|+.++++ .+.++|..|.
T Consensus 204 ~~l-~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~ 281 (317)
T 3o53_A 204 AFM-GPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE 281 (317)
T ss_dssp CEE-CGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSC
T ss_pred Ccc-hhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchh
Confidence 643 333666666666666666666 35666666666666666666666 5566666666666666666 3345555443
No 61
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.94 E-value=9.3e-27 Score=258.52 Aligned_cols=238 Identities=18% Similarity=0.234 Sum_probs=180.2
Q ss_pred ccCceEEEEecCCcccccCChhhhccCCCCeEEccCccccccCCchhhhcCcccccEEECCCCcCCcccc-CccCCCCCc
Q 047927 621 FMSLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVS-ATFPANCSL 699 (1005)
Q Consensus 621 ~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L 699 (1005)
.++.|++|++++|.+++..|..|..+++|++|++++|++++..+..+..++ +|++|++++|++++..+ ..|..+++|
T Consensus 74 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~--~L~~L~L~~n~l~~l~~~~~~~~l~~L 151 (353)
T 2z80_A 74 RCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLS--SLTFLNLLGNPYKTLGETSLFSHLTKL 151 (353)
T ss_dssp TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCT--TCSEEECTTCCCSSSCSSCSCTTCTTC
T ss_pred cCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCc--cCCEEECCCCCCcccCchhhhccCCCC
Confidence 466777777777777777777788888888888888888754444577776 78888888888886555 577788888
Q ss_pred cEEeCCCC-eecccCcccccCCCCCCEEECCCCcCCCCcchhhhcCCCCcEEecCCCcCCcccCCCCCCCCCCCccEEEc
Q 047927 700 RTLDLNGN-QLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDL 778 (1005)
Q Consensus 700 ~~L~L~~N-~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l 778 (1005)
++|++++| .+.+..+..|..+++|++|++++|++++..|.+++.+++|++|++++|++.... +.....+++|+.|++
T Consensus 152 ~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~--~~~~~~~~~L~~L~L 229 (353)
T 2z80_A 152 QILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLL--EIFVDVTSSVECLEL 229 (353)
T ss_dssp CEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHH--HHHHHHTTTEEEEEE
T ss_pred cEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccch--hhhhhhcccccEEEC
Confidence 88888888 466666777888888888888888888877888888888888888888875432 222334778888888
Q ss_pred cCCcccccCChHHHhhhhhhhhccCCchhhhchhhheecccccccccccEEEEEcchHHHHHHhcccceEEECCCCeeec
Q 047927 779 ASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEG 858 (1005)
Q Consensus 779 s~N~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g 858 (1005)
++|++++..+..+.. ......++.++|+++.+++
T Consensus 230 ~~n~l~~~~~~~l~~----------------------------------------------~~~~~~l~~l~L~~~~l~~ 263 (353)
T 2z80_A 230 RDTDLDTFHFSELST----------------------------------------------GETNSLIKKFTFRNVKITD 263 (353)
T ss_dssp ESCBCTTCCCC----------------------------------------------------CCCCCCEEEEESCBCCH
T ss_pred CCCcccccccccccc----------------------------------------------ccccchhhccccccccccC
Confidence 888887654422110 0123456777888888776
Q ss_pred ----cCcccccCCCCCCEEECCCCcCcccCchh-hhcCCCCCEEeCCCCcCcccCc
Q 047927 859 ----PIPEEMGLLQSLCALNLSHNALTGSIPSL-IGNLREIESLDLSMNNLSGTIP 909 (1005)
Q Consensus 859 ----~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~-~~~l~~L~~LdLs~N~l~~~ip 909 (1005)
.+|+.++.+++|++|||++|+++ .+|.. ++++++|++|+|++|.+++..|
T Consensus 264 ~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 264 ESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp HHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred cchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 47889999999999999999999 67776 4899999999999999998766
No 62
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=1.8e-25 Score=256.95 Aligned_cols=230 Identities=21% Similarity=0.207 Sum_probs=204.1
Q ss_pred CceEEEEecCCcccccCChhhhccCCCCeEEccCccccccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCccEE
Q 047927 623 SLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTL 702 (1005)
Q Consensus 623 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 702 (1005)
+.+++|++++|.+++..|..|.++++|+.|+|++|++++..|..+.+++ +|++|+|++|++++..+..|..+++|++|
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~--~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 152 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLA--SLNTLELFDNWLTVIPSGAFEYLSKLREL 152 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT--TCCEEECCSSCCSBCCTTTSSSCTTCCEE
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcc--cCCEEECCCCcCCccChhhhcccCCCCEE
Confidence 5678888888888888888999999999999999999988888999988 99999999999999888889999999999
Q ss_pred eCCCCeecccCcccccCCCCCCEEECCCC-cCCCCcchhhhcCCCCcEEecCCCcCCcccCCCCCCCCCCCccEEEccCC
Q 047927 703 DLNGNQLEGMVPKSLANCSVLEILDLGNN-QFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASN 781 (1005)
Q Consensus 703 ~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N 781 (1005)
+|++|++++..+..|..+++|+.|++++| .+....+..|.++++|++|+|++|++++. ..+..+++|+.|++++|
T Consensus 153 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~l~~L~~L~Ls~N 228 (452)
T 3zyi_A 153 WLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM----PNLTPLVGLEELEMSGN 228 (452)
T ss_dssp ECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC----CCCTTCTTCCEEECTTS
T ss_pred ECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc----ccccccccccEEECcCC
Confidence 99999999888889999999999999995 55544556799999999999999999863 35788999999999999
Q ss_pred cccccCChHHHhhhhhhhhccCCchhhhchhhheecccccccccccEEEEEcchHHHHHHhcccceEEECCCCeeeccCc
Q 047927 782 KFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIP 861 (1005)
Q Consensus 782 ~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip 861 (1005)
++++..|..+ ..+++|+.|+|++|++++..|
T Consensus 229 ~l~~~~~~~~-------------------------------------------------~~l~~L~~L~L~~n~l~~~~~ 259 (452)
T 3zyi_A 229 HFPEIRPGSF-------------------------------------------------HGLSSLKKLWVMNSQVSLIER 259 (452)
T ss_dssp CCSEECGGGG-------------------------------------------------TTCTTCCEEECTTSCCCEECT
T ss_pred cCcccCcccc-------------------------------------------------cCccCCCEEEeCCCcCceECH
Confidence 9987666432 146789999999999999999
Q ss_pred ccccCCCCCCEEECCCCcCcccCchhhhcCCCCCEEeCCCCcCccc
Q 047927 862 EEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGT 907 (1005)
Q Consensus 862 ~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~~~ 907 (1005)
..|.++++|+.|+|++|++++..+..+..+++|+.|+|++|.+...
T Consensus 260 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~Cd 305 (452)
T 3zyi_A 260 NAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCD 305 (452)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECS
T ss_pred HHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCC
Confidence 9999999999999999999988888889999999999999998643
No 63
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.93 E-value=3.2e-25 Score=253.91 Aligned_cols=229 Identities=22% Similarity=0.228 Sum_probs=201.9
Q ss_pred CceEEEEecCCcccccCChhhhccCCCCeEEccCccccccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCccEE
Q 047927 623 SLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTL 702 (1005)
Q Consensus 623 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 702 (1005)
+.++.|++++|++++..+..|.++++|++|+|++|++++..+..|.+++ +|++|+|++|++++..+..|..+++|++|
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~--~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 141 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLA--NLNTLELFDNRLTTIPNGAFVYLSKLKEL 141 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCS--SCCEEECCSSCCSSCCTTTSCSCSSCCEE
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCc--cCCEEECCCCcCCeeCHhHhhccccCcee
Confidence 5677888888888888888999999999999999999988888898888 89999999999998888899999999999
Q ss_pred eCCCCeecccCcccccCCCCCCEEECCCC-cCCCCcchhhhcCCCCcEEecCCCcCCcccCCCCCCCCCCCccEEEccCC
Q 047927 703 DLNGNQLEGMVPKSLANCSVLEILDLGNN-QFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASN 781 (1005)
Q Consensus 703 ~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N 781 (1005)
+|++|++++..+..|..+++|++|++++| .+....+..|.++++|++|++++|+++.. | .+..+++|+.||+++|
T Consensus 142 ~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~---~-~~~~l~~L~~L~Ls~N 217 (440)
T 3zyj_A 142 WLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI---P-NLTPLIKLDELDLSGN 217 (440)
T ss_dssp ECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC---C-CCTTCSSCCEEECTTS
T ss_pred eCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc---c-ccCCCcccCEEECCCC
Confidence 99999999888889999999999999995 45544556799999999999999999742 3 4788999999999999
Q ss_pred cccccCChHHHhhhhhhhhccCCchhhhchhhheecccccccccccEEEEEcchHHHHHHhcccceEEECCCCeeeccCc
Q 047927 782 KFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIP 861 (1005)
Q Consensus 782 ~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip 861 (1005)
++++..|..+ ..+++|+.|+|++|++++..|
T Consensus 218 ~l~~~~~~~~-------------------------------------------------~~l~~L~~L~L~~n~l~~~~~ 248 (440)
T 3zyj_A 218 HLSAIRPGSF-------------------------------------------------QGLMHLQKLWMIQSQIQVIER 248 (440)
T ss_dssp CCCEECTTTT-------------------------------------------------TTCTTCCEEECTTCCCCEECT
T ss_pred ccCccChhhh-------------------------------------------------ccCccCCEEECCCCceeEECh
Confidence 9987666432 146789999999999999999
Q ss_pred ccccCCCCCCEEECCCCcCcccCchhhhcCCCCCEEeCCCCcCcc
Q 047927 862 EEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSG 906 (1005)
Q Consensus 862 ~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~~ 906 (1005)
..|.++++|+.|||++|++++..+..+..+++|+.|+|++|.+..
T Consensus 249 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C 293 (440)
T 3zyj_A 249 NAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNC 293 (440)
T ss_dssp TSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEEC
T ss_pred hhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccC
Confidence 999999999999999999998888888999999999999999864
No 64
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=2e-27 Score=258.55 Aligned_cols=207 Identities=21% Similarity=0.226 Sum_probs=114.1
Q ss_pred ccCCCCeEEccCccccccCCchh--hhcCcccccEEECCCCcCCccccCccCCC-----CCccEEeCCCCeecccCcccc
Q 047927 645 NATNLLVLDLSYNYLSGMIPTCL--INMSDSQLGVLNLRRNNLNGTVSATFPAN-----CSLRTLDLNGNQLEGMVPKSL 717 (1005)
Q Consensus 645 ~l~~L~~L~Ls~N~l~~~~p~~~--~~l~~~~L~~L~L~~n~l~~~~~~~~~~l-----~~L~~L~L~~N~l~~~~p~~l 717 (1005)
++++|++|++++|++++.+|..+ ..++ +|++|++++|++++. |..+..+ ++|++|++++|++++..|..|
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~--~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~ 169 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGP--DLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQV 169 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSC--CCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCC--CccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHh
Confidence 34445555555555444444443 3333 445555555554444 4434333 455555555555554444555
Q ss_pred cCCCCCCEEECCCCcCCCC--cchhh--hcCCCCcEEecCCCcCCcccCCC-CCCCCCCCccEEEccCCcccccCChHHH
Q 047927 718 ANCSVLEILDLGNNQFDDT--FPCWV--KNASRLHVLILRSNNFFGNISCP-RYNVSWPMLQIIDLASNKFSGRLPQKWL 792 (1005)
Q Consensus 718 ~~l~~L~~L~Ls~N~l~~~--~p~~~--~~l~~L~~L~L~~N~l~~~~~~~-~~~~~l~~L~~L~ls~N~~~~~~p~~~~ 792 (1005)
..+++|++|++++|++.+. .|..+ +.+++|++|++++|++++....+ ..+..+++|+.||+++|++++..|...+
T Consensus 170 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 249 (312)
T 1wwl_A 170 RVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSC 249 (312)
T ss_dssp CCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCC
T ss_pred ccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhh
Confidence 5555555555555554433 12222 44555555555555554211001 1122445555566666655554431110
Q ss_pred hhhhhhhhccCCchhhhchhhheecccccccccccEEEEEcchHHHHHHhcccceEEECCCCeeeccCcccccCCCCCCE
Q 047927 793 LNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSLCA 872 (1005)
Q Consensus 793 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~ 872 (1005)
..++.|+.|+|++|+++ .+|..+. ++|++
T Consensus 250 ------------------------------------------------~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~ 278 (312)
T 1wwl_A 250 ------------------------------------------------DWPSQLNSLNLSFTGLK-QVPKGLP--AKLSV 278 (312)
T ss_dssp ------------------------------------------------CCCTTCCEEECTTSCCS-SCCSSCC--SEEEE
T ss_pred ------------------------------------------------hhcCCCCEEECCCCccC-hhhhhcc--CCceE
Confidence 02456777788888877 6777766 78888
Q ss_pred EECCCCcCcccCchhhhcCCCCCEEeCCCCcCccc
Q 047927 873 LNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGT 907 (1005)
Q Consensus 873 L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~~~ 907 (1005)
|||++|+|++. |. +..+++|+.|+|++|++++.
T Consensus 279 L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 279 LDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp EECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTCC
T ss_pred EECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCCC
Confidence 88888888865 66 88888888999999888763
No 65
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=7.3e-26 Score=246.74 Aligned_cols=243 Identities=22% Similarity=0.175 Sum_probs=206.9
Q ss_pred eEEEEecCCcccccCChhhhccCCCCeEEccCccccccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCccEEeC
Q 047927 625 SIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDL 704 (1005)
Q Consensus 625 L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 704 (1005)
++..+++.+.+....+..+..+++|++|++++|++++..|..+..++ +|++|++++|++++..+ |..+++|++|++
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~--~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~L 87 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFT--KLELLNLSSNVLYETLD--LESLSTLRTLDL 87 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCT--TCCEEECTTSCCEEEEE--ETTCTTCCEEEC
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCC--cCCEEECCCCcCCcchh--hhhcCCCCEEEC
Confidence 45566777777666666677788999999999999988888999998 99999999999998776 899999999999
Q ss_pred CCCeecccCcccccCCCCCCEEECCCCcCCCCcchhhhcCCCCcEEecCCCcCCcccCCCCCCCCCCCccEEEccCCccc
Q 047927 705 NGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFS 784 (1005)
Q Consensus 705 ~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~~~ 784 (1005)
++|++++.. ..++|++|++++|++++..+.. +++|++|++++|++++.. +..+..+++|+.|++++|+++
T Consensus 88 s~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~--~~~~~~l~~L~~L~Ls~N~l~ 157 (317)
T 3o53_A 88 NNNYVQELL-----VGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLR--DLDEGCRSRVQYLDLKLNEID 157 (317)
T ss_dssp CSSEEEEEE-----ECTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGG--GBCTGGGSSEEEEECTTSCCC
T ss_pred cCCcccccc-----CCCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCcc--chhhhccCCCCEEECCCCCCC
Confidence 999999643 3489999999999999876654 678999999999998865 667888999999999999998
Q ss_pred ccCChHHHhhhhhhhhccCCchhhhchhhheecccccccccccEEEEEcchHHHHHHhcccceEEECCCCeeeccCcccc
Q 047927 785 GRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEM 864 (1005)
Q Consensus 785 ~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~ 864 (1005)
+..|..+. ..++.|+.|+|++|++++. |. .
T Consensus 158 ~~~~~~~~------------------------------------------------~~l~~L~~L~L~~N~l~~~-~~-~ 187 (317)
T 3o53_A 158 TVNFAELA------------------------------------------------ASSDTLEHLNLQYNFIYDV-KG-Q 187 (317)
T ss_dssp EEEGGGGG------------------------------------------------GGTTTCCEEECTTSCCCEE-EC-C
T ss_pred cccHHHHh------------------------------------------------hccCcCCEEECCCCcCccc-cc-c
Confidence 76554321 1357899999999999976 33 3
Q ss_pred cCCCCCCEEECCCCcCcccCchhhhcCCCCCEEeCCCCcCcccCcccccCCCCCCeEEccCCccc-ccCC
Q 047927 865 GLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLNLSYNHLV-GRIP 933 (1005)
Q Consensus 865 ~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~-g~ip 933 (1005)
..+++|++|+|++|++++ +|..+..+++|+.|||++|+++ .+|..+..+++|+.|++++|+++ +.+|
T Consensus 188 ~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~ 255 (317)
T 3o53_A 188 VVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLR 255 (317)
T ss_dssp CCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHH
T ss_pred cccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHH
Confidence 459999999999999996 5566999999999999999999 57888999999999999999999 4444
No 66
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.93 E-value=1.5e-27 Score=285.52 Aligned_cols=350 Identities=13% Similarity=0.018 Sum_probs=199.1
Q ss_pred CCCCCcEEEccCCCCCcc----CccccCCCCCCCEEeCCCCCCCCCCCCc----ccCCCCCcEEEcccccccccCchhhc
Q 047927 235 DFSNLTSLYLSSCGLHGA----FPEKILQLPTLETLDLSYNELLQGSLPD----FHQNLSLETLILSATNFSGILPDSIK 306 (1005)
Q Consensus 235 ~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~n~~~~~~~~~----~~~~~~L~~L~L~~n~l~~~~p~~l~ 306 (1005)
.+++|++|++++|.+++. ++..+..+++|++|++++|.+....... +..+++|++|++++|.+.+ +|..+.
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~ 240 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFK 240 (592)
T ss_dssp HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHH
T ss_pred hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHh
Confidence 455555555555554433 2222334555666666655543211111 2235666666666666654 456677
Q ss_pred cCCCCCEEeecCCccC---CCCCccCCCCCCCcEEECcCCcCccCCCcccccCcccEEECCCCcCcCCCCcccccccccc
Q 047927 307 NLKNLSRVEFYLCNFN---GPIPTSMSDLSQLVYLDMSFNHFSGPIPSLHMFRNLAYLDLSYNIFTGGISSIGWEQLLNL 383 (1005)
Q Consensus 307 ~l~~L~~L~l~~n~~~---~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L 383 (1005)
.+++|++|+++.+... ...+..+..+++|+.|+++++...........+++|++|++++|.+++......+..+++|
T Consensus 241 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L 320 (592)
T 3ogk_B 241 AAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNL 320 (592)
T ss_dssp HCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTC
T ss_pred hhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCC
Confidence 7777777777653322 2333456667777777777654333222333455777788777775543322224667778
Q ss_pred cEEEcCCCcCCCccCccCCCCCCCCEEeCcC-----------cccccccccccccccccCCEEeCCCCccCCCCCccccC
Q 047927 384 FHVDLSHNNLGGSIPQSLFELPMVQHLLLAD-----------NQFDGHVTEISNASSSLLDTLDLSDNNLEGPIPLSFFE 452 (1005)
Q Consensus 384 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~-----------n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~ 452 (1005)
++|+++++...+.++.....+++|++|++.+ +.+++.........+++|++|+++.+.+++..+..+..
T Consensus 321 ~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~ 400 (592)
T 3ogk_B 321 EVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGT 400 (592)
T ss_dssp CEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHH
T ss_pred CEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHh
Confidence 8887773322222333335567788888773 34443222222334677888888777777665555554
Q ss_pred -cCCCcEEECC----CCcceecc----chhHHHhcCCCCeEeccCCe--eeEecCCcccccCcccceEEcCCccCcC--C
Q 047927 453 -LKNLKILLLS----SNKFVGTI----ELDAIQRLRNLFRLDLSYNR--LAVVAGSSVYCFPPLLTTLSLASCKLSA--I 519 (1005)
Q Consensus 453 -l~~L~~L~L~----~n~l~~~~----~~~~l~~l~~L~~L~l~~n~--l~~~~~~~~~~~~~~L~~L~L~~n~l~~--l 519 (1005)
+++|+.|+++ .|.+++.. -...+.++++|++|++++|. ++......+....++|++|++++|+++. +
T Consensus 401 ~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 480 (592)
T 3ogk_B 401 YLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGL 480 (592)
T ss_dssp HCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHH
T ss_pred hCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHH
Confidence 7788888885 45555320 11235667888888886543 3322222222335668888888887763 3
Q ss_pred CC-CCCCCceeEEECcCCcCCCCCChhhhhhcCCcccEEeCCCCcccCCCCCCccccCCcccEEEecc
Q 047927 520 PN-LRKQTKLYHLDLSDNQISGEIPNWLWKIGKDSFNHLNLSHNLLVSLEQPYSISDLTSLSVLDLHS 586 (1005)
Q Consensus 520 ~~-l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~ 586 (1005)
+. +..+++|++|++++|.+++.....+.. ..++|++|++++|+++......-...++.+....+..
T Consensus 481 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~-~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~ 547 (592)
T 3ogk_B 481 MEFSRGCPNLQKLEMRGCCFSERAIAAAVT-KLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPS 547 (592)
T ss_dssp HHHHTCCTTCCEEEEESCCCBHHHHHHHHH-HCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECC
T ss_pred HHHHhcCcccCeeeccCCCCcHHHHHHHHH-hcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecC
Confidence 43 567788888888888876443333322 3467888888888876543222233456665555543
No 67
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=2.3e-24 Score=253.11 Aligned_cols=262 Identities=27% Similarity=0.272 Sum_probs=161.6
Q ss_pred cccEEeCCCCcccCCCCCCccccCCcccEEEeccCcccccCCCCCCCcceeeCcCCcCccCCCcchhcccCceEEEEecC
Q 047927 553 SFNHLNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIPPLPPNAAYVDYSGNNFTSSIPVDIGSFMSLSIFFSFSK 632 (1005)
Q Consensus 553 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ls~n~~~~~~p~~~~~~~~~L~~L~l~~ 632 (1005)
.++.|++++|.++.++.... ++|++|++++|.++ .+|.. +++|++|++++
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~----~~L~~L~L~~N~l~-~lp~~-------------------------l~~L~~L~Ls~ 90 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLP----AHITTLVIPDNNLT-SLPAL-------------------------PPELRTLEVSG 90 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCC----TTCSEEEECSCCCS-CCCCC-------------------------CTTCCEEEECS
T ss_pred CCcEEEecCCCcCccChhhC----CCCcEEEecCCCCC-CCCCc-------------------------CCCCCEEEcCC
Confidence 36667777777766543221 56666677666665 23333 34555555555
Q ss_pred CcccccCChhhhccCCCCeEEccCccccccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCccEEeCCCCeeccc
Q 047927 633 NSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGM 712 (1005)
Q Consensus 633 n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 712 (1005)
|++++ +|. .+++|++|++++|++++ +|. .+. +|+.|++++|+++++ |.. +++|++|++++|++++
T Consensus 91 N~l~~-lp~---~l~~L~~L~Ls~N~l~~-l~~---~l~--~L~~L~L~~N~l~~l-p~~---l~~L~~L~Ls~N~l~~- 155 (622)
T 3g06_A 91 NQLTS-LPV---LPPGLLELSIFSNPLTH-LPA---LPS--GLCKLWIFGNQLTSL-PVL---PPGLQELSVSDNQLAS- 155 (622)
T ss_dssp CCCSC-CCC---CCTTCCEEEECSCCCCC-CCC---CCT--TCCEEECCSSCCSCC-CCC---CTTCCEEECCSSCCSC-
T ss_pred CcCCc-CCC---CCCCCCEEECcCCcCCC-CCC---CCC--CcCEEECCCCCCCcC-CCC---CCCCCEEECcCCcCCC-
Confidence 55553 333 45666666666666663 333 222 566666666666653 222 2566666777666664
Q ss_pred CcccccCCCCCCEEECCCCcCCCCcchhhhcCCCCcEEecCCCcCCcccCCCCCCCCCCCccEEEccCCcccccCChHHH
Q 047927 713 VPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWL 792 (1005)
Q Consensus 713 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~~~~~~p~~~~ 792 (1005)
+|. .+++|+.|++++|++++ +| ..+++|+.|++++|++++. |. ..++|+.|++++|.++. +|.
T Consensus 156 l~~---~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~l---~~---~~~~L~~L~L~~N~l~~-l~~--- 218 (622)
T 3g06_A 156 LPA---LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLASL---PT---LPSELYKLWAYNNRLTS-LPA--- 218 (622)
T ss_dssp CCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSCC---CC---CCTTCCEEECCSSCCSS-CCC---
T ss_pred cCC---ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCCC---CC---ccchhhEEECcCCcccc-cCC---
Confidence 232 23566667777776665 33 3456667777777766542 22 23566777777776652 221
Q ss_pred hhhhhhhhccCCchhhhchhhheecccccccccccEEEEEcchHHHHHHhcccceEEECCCCeeeccCcccccCCCCCCE
Q 047927 793 LNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSLCA 872 (1005)
Q Consensus 793 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~ 872 (1005)
.+++|+.|+|++|++++ +| ..+++|+.
T Consensus 219 -------------------------------------------------~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~ 245 (622)
T 3g06_A 219 -------------------------------------------------LPSGLKELIVSGNRLTS-LP---VLPSELKE 245 (622)
T ss_dssp -------------------------------------------------CCTTCCEEECCSSCCSC-CC---CCCTTCCE
T ss_pred -------------------------------------------------CCCCCCEEEccCCccCc-CC---CCCCcCcE
Confidence 12456777777777775 55 44577778
Q ss_pred EECCCCcCcccCchhhhcCCCCCEEeCCCCcCcccCcccccCCCCCCeEEccCCcccccCCC
Q 047927 873 LNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLNLSYNHLVGRIPT 934 (1005)
Q Consensus 873 L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~ 934 (1005)
|+|++|+|+ .+|. .+++|+.|+|++|+|+ .+|..+.++++|+.|+|++|+++|.+|.
T Consensus 246 L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~ 302 (622)
T 3g06_A 246 LMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 302 (622)
T ss_dssp EECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHH
T ss_pred EECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHH
Confidence 888888877 4665 5677778888888887 6677777888888888888888777664
No 68
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=2e-26 Score=265.77 Aligned_cols=216 Identities=23% Similarity=0.176 Sum_probs=134.1
Q ss_pred CCCeEEccCccccccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCccEEeCCCCeecccCcccccCCCCCCEEE
Q 047927 648 NLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILD 727 (1005)
Q Consensus 648 ~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ 727 (1005)
+|+.|+|++|.+++..|..+..++ +|++|+|++|.+++..| |..+++|++|+|++|.+++..+ .++|+.|+
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~--~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~ 105 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFT--KLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLH 105 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCT--TCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEE
T ss_pred CccEEEeeCCcCCCCCHHHHhCCC--CCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEE
Confidence 556666666666555555555555 56666666666655444 5556666666666666664322 25666666
Q ss_pred CCCCcCCCCcchhhhcCCCCcEEecCCCcCCcccCCCCCCCCCCCccEEEccCCcccccCChHHHhhhhhhhhccCCchh
Q 047927 728 LGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQS 807 (1005)
Q Consensus 728 Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~~~~~~p~~~~~~l~~~~~~~~~~~~ 807 (1005)
+++|.+++..+. .+++|+.|++++|++++.. |..+..+++|+.|++++|.+++..|..+.
T Consensus 106 L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--------------- 165 (487)
T 3oja_A 106 AANNNISRVSCS---RGQGKKNIYLANNKITMLR--DLDEGCRSRVQYLDLKLNEIDTVNFAELA--------------- 165 (487)
T ss_dssp CCSSCCCCEEEC---CCSSCEEEECCSSCCCSGG--GBCGGGGSSEEEEECTTSCCCEEEGGGGG---------------
T ss_pred CcCCcCCCCCcc---ccCCCCEEECCCCCCCCCC--chhhcCCCCCCEEECCCCCCCCcChHHHh---------------
Confidence 666666655443 2455666666666666544 44555666666666666666665543221
Q ss_pred hhchhhheecccccccccccEEEEEcchHHHHHHhcccceEEECCCCeeeccCcccccCCCCCCEEECCCCcCcccCchh
Q 047927 808 ELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSL 887 (1005)
Q Consensus 808 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~ 887 (1005)
..++.|+.|+|++|.+++..+ +..+++|+.|+|++|++++. |..
T Consensus 166 ---------------------------------~~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~-~~~ 209 (487)
T 3oja_A 166 ---------------------------------ASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFM-GPE 209 (487)
T ss_dssp ---------------------------------GGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEE-CGG
T ss_pred ---------------------------------hhCCcccEEecCCCccccccc--cccCCCCCEEECCCCCCCCC-CHh
Confidence 124566777777777776522 33477777777777777753 344
Q ss_pred hhcCCCCCEEeCCCCcCcccCcccccCCCCCCeEEccCCccc
Q 047927 888 IGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLNLSYNHLV 929 (1005)
Q Consensus 888 ~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~ 929 (1005)
++.+++|+.|||++|++++ +|..+..+++|+.|++++|+++
T Consensus 210 ~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 210 FQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp GGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBC
T ss_pred HcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCc
Confidence 7777777777777777775 5666777777777777777777
No 69
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.92 E-value=3.5e-24 Score=251.49 Aligned_cols=268 Identities=25% Similarity=0.285 Sum_probs=203.7
Q ss_pred ceeEEECcCCcCCCCCChhhhhhcCCcccEEeCCCCcccCCCCCCccccCCcccEEEeccCcccccCCCCCCCcceeeCc
Q 047927 527 KLYHLDLSDNQISGEIPNWLWKIGKDSFNHLNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIPPLPPNAAYVDYS 606 (1005)
Q Consensus 527 ~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ls 606 (1005)
.++.|++++|.++ .+|..+. ..++.|++++|.++.++. .+++|++|++++|.+++ +|..
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~----~~L~~L~L~~N~l~~lp~-----~l~~L~~L~Ls~N~l~~-lp~~---------- 99 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP----AHITTLVIPDNNLTSLPA-----LPPELRTLEVSGNQLTS-LPVL---------- 99 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC----TTCSEEEECSCCCSCCCC-----CCTTCCEEEECSCCCSC-CCCC----------
T ss_pred CCcEEEecCCCcC-ccChhhC----CCCcEEEecCCCCCCCCC-----cCCCCCEEEcCCCcCCc-CCCC----------
Confidence 5899999999998 7777553 679999999999998765 46899999999999873 4433
Q ss_pred CCcCccCCCcchhcccCceEEEEecCCcccccCChhhhccCCCCeEEccCccccccCCchhhhcCcccccEEECCCCcCC
Q 047927 607 GNNFTSSIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLN 686 (1005)
Q Consensus 607 ~n~~~~~~p~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~ 686 (1005)
+++|++|++++|.+++. |. .+++|+.|++++|++++ +|..+ + +|++|++++|+++
T Consensus 100 ---------------l~~L~~L~Ls~N~l~~l-~~---~l~~L~~L~L~~N~l~~-lp~~l---~--~L~~L~Ls~N~l~ 154 (622)
T 3g06_A 100 ---------------PPGLLELSIFSNPLTHL-PA---LPSGLCKLWIFGNQLTS-LPVLP---P--GLQELSVSDNQLA 154 (622)
T ss_dssp ---------------CTTCCEEEECSCCCCCC-CC---CCTTCCEEECCSSCCSC-CCCCC---T--TCCEEECCSSCCS
T ss_pred ---------------CCCCCEEECcCCcCCCC-CC---CCCCcCEEECCCCCCCc-CCCCC---C--CCCEEECcCCcCC
Confidence 34555666666666543 32 45677788888887774 45432 3 7888888888877
Q ss_pred ccccCccCCCCCccEEeCCCCeecccCcccccCCCCCCEEECCCCcCCCCcchhhhcCCCCcEEecCCCcCCcccCCCCC
Q 047927 687 GTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRY 766 (1005)
Q Consensus 687 ~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 766 (1005)
+. |. ...+|+.|++++|++++ +| ..+++|+.|++++|++++ +|. .+++|+.|++++|.++.. |.
T Consensus 155 ~l-~~---~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~l---~~- 218 (622)
T 3g06_A 155 SL-PA---LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLTSL---PA- 218 (622)
T ss_dssp CC-CC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSC---CC-
T ss_pred Cc-CC---ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCccccc---CC-
Confidence 54 22 23578888888888885 44 456788888888888876 333 246788888888888742 32
Q ss_pred CCCCCCccEEEccCCcccccCChHHHhhhhhhhhccCCchhhhchhhheecccccccccccEEEEEcchHHHHHHhcccc
Q 047927 767 NVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIF 846 (1005)
Q Consensus 767 ~~~l~~L~~L~ls~N~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 846 (1005)
.+++|+.|++++|++++ +|. .+++|
T Consensus 219 --~~~~L~~L~Ls~N~L~~-lp~----------------------------------------------------~l~~L 243 (622)
T 3g06_A 219 --LPSGLKELIVSGNRLTS-LPV----------------------------------------------------LPSEL 243 (622)
T ss_dssp --CCTTCCEEECCSSCCSC-CCC----------------------------------------------------CCTTC
T ss_pred --CCCCCCEEEccCCccCc-CCC----------------------------------------------------CCCcC
Confidence 24788899999998875 341 24678
Q ss_pred eEEECCCCeeeccCcccccCCCCCCEEECCCCcCcccCchhhhcCCCCCEEeCCCCcCcccCcccccCCC
Q 047927 847 TSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLASLN 916 (1005)
Q Consensus 847 ~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~ 916 (1005)
+.|+|++|+++ .+|. .+++|+.|+|++|+|+ .+|..++++++|+.|+|++|.+++.+|..+..++
T Consensus 244 ~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 244 KELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT 308 (622)
T ss_dssp CEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred cEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence 89999999998 5666 5789999999999999 7899999999999999999999999999887765
No 70
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.92 E-value=1.1e-24 Score=232.84 Aligned_cols=211 Identities=20% Similarity=0.162 Sum_probs=138.2
Q ss_pred cccEEECCCCcCCccccCccCCCCCccEEeCCCCeecccCcccccCCCCCCEEECCCCcCCCCcchhhhcCCCCcEEecC
Q 047927 674 QLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILR 753 (1005)
Q Consensus 674 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~ 753 (1005)
+|++|++++|++++..+..|..+++|++|++++|++++..+..|..+++|++|++++|++++..+..|.++++|++|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 45555555555555444455555555555555555555544555555555555555555555555555555555555555
Q ss_pred CCcCCcccCCCCCCCCCCCccEEEccCCccccc-CChHHHhhhhhhhhccCCchhhhchhhheecccccccccccEEEEE
Q 047927 754 SNNFFGNISCPRYNVSWPMLQIIDLASNKFSGR-LPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTI 832 (1005)
Q Consensus 754 ~N~l~~~~~~~~~~~~l~~L~~L~ls~N~~~~~-~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 832 (1005)
+|++.+.. +..+..+++|+.|++++|++.+. +|..+
T Consensus 109 ~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~l~~~~----------------------------------------- 145 (276)
T 2z62_A 109 ETNLASLE--NFPIGHLKTLKELNVAHNLIQSFKLPEYF----------------------------------------- 145 (276)
T ss_dssp TSCCCCST--TCCCTTCTTCCEEECCSSCCCCCCCCGGG-----------------------------------------
T ss_pred CCCccccC--chhcccCCCCCEEECcCCccceecCchhh-----------------------------------------
Confidence 55555432 33455556666666666665542 34221
Q ss_pred cchHHHHHHhcccceEEECCCCeeeccCcccccCCCCCC----EEECCCCcCcccCchhhhcCCCCCEEeCCCCcCcccC
Q 047927 833 KGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSLC----ALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTI 908 (1005)
Q Consensus 833 ~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~----~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~~~i 908 (1005)
..+++|+.|+|++|++++..+..+..++.|+ .|++++|++++..+.. ....+|+.|+|++|++++..
T Consensus 146 --------~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~-~~~~~L~~L~L~~n~l~~~~ 216 (276)
T 2z62_A 146 --------SNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA-FKEIRLKELALDTNQLKSVP 216 (276)
T ss_dssp --------GGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTS-SCSCCEEEEECCSSCCSCCC
T ss_pred --------ccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccc-cCCCcccEEECCCCceeecC
Confidence 1356677788888888777777777666666 8999999999655544 44558999999999999887
Q ss_pred cccccCCCCCCeEEccCCcccccCCCCC
Q 047927 909 PAQLASLNFLSVLNLSYNHLVGRIPTST 936 (1005)
Q Consensus 909 p~~l~~l~~L~~L~ls~N~l~g~ip~~~ 936 (1005)
+..+.++++|++|++++|+++|.+|.-.
T Consensus 217 ~~~~~~l~~L~~L~l~~N~~~c~c~~l~ 244 (276)
T 2z62_A 217 DGIFDRLTSLQKIWLHTNPWDCSCPRID 244 (276)
T ss_dssp TTTTTTCCSCCEEECCSSCBCCCTTTTH
T ss_pred HhHhcccccccEEEccCCcccccCCchH
Confidence 7888999999999999999999988543
No 71
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=2.3e-25 Score=256.93 Aligned_cols=236 Identities=20% Similarity=0.155 Sum_probs=210.1
Q ss_pred cCceEEEEecCCcccccCChhhhccCCCCeEEccCccccccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCccE
Q 047927 622 MSLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRT 701 (1005)
Q Consensus 622 ~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 701 (1005)
++.+++|++++|.+++..|..|..+++|+.|+|++|.+++..| +..++ +|++|+|++|.+++..+. ++|++
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~--~L~~L~Ls~N~l~~l~~~-----~~L~~ 103 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLS--TLRTLDLNNNYVQELLVG-----PSIET 103 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCT--TCCEEECCSSEEEEEEEC-----TTCCE
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCC--CCCEEEecCCcCCCCCCC-----CCcCE
Confidence 4589999999999999989999999999999999999997666 78887 999999999999976543 79999
Q ss_pred EeCCCCeecccCcccccCCCCCCEEECCCCcCCCCcchhhhcCCCCcEEecCCCcCCcccCCCCCCC-CCCCccEEEccC
Q 047927 702 LDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNV-SWPMLQIIDLAS 780 (1005)
Q Consensus 702 L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~-~l~~L~~L~ls~ 780 (1005)
|++++|.+++..+. .+++|+.|++++|.+++..|..++.+++|++|+|++|.+++.+ |..+. .+++|+.|++++
T Consensus 104 L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~--~~~l~~~l~~L~~L~Ls~ 178 (487)
T 3oja_A 104 LHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN--FAELAASSDTLEHLNLQY 178 (487)
T ss_dssp EECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEE--GGGGGGGTTTCCEEECTT
T ss_pred EECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcC--hHHHhhhCCcccEEecCC
Confidence 99999999987665 4588999999999999999999999999999999999999876 66665 789999999999
Q ss_pred CcccccCChHHHhhhhhhhhccCCchhhhchhhheecccccccccccEEEEEcchHHHHHHhcccceEEECCCCeeeccC
Q 047927 781 NKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPI 860 (1005)
Q Consensus 781 N~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~i 860 (1005)
|.+++..+.. .++.|+.|+|++|++++.+
T Consensus 179 N~l~~~~~~~---------------------------------------------------~l~~L~~L~Ls~N~l~~~~ 207 (487)
T 3oja_A 179 NFIYDVKGQV---------------------------------------------------VFAKLKTLDLSSNKLAFMG 207 (487)
T ss_dssp SCCCEEECCC---------------------------------------------------CCTTCCEEECCSSCCCEEC
T ss_pred Cccccccccc---------------------------------------------------cCCCCCEEECCCCCCCCCC
Confidence 9998653210 2578999999999999855
Q ss_pred cccccCCCCCCEEECCCCcCcccCchhhhcCCCCCEEeCCCCcCc-ccCcccccCCCCCCeEEcc
Q 047927 861 PEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLS-GTIPAQLASLNFLSVLNLS 924 (1005)
Q Consensus 861 p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~-~~ip~~l~~l~~L~~L~ls 924 (1005)
| .++.+++|+.|+|++|.+++ +|..++.+++|+.|++++|.++ +.+|..+..++.|+.++++
T Consensus 208 ~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 208 P-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp G-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred H-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 5 59999999999999999996 8888999999999999999998 7888999999999998887
No 72
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.90 E-value=2.8e-23 Score=221.83 Aligned_cols=213 Identities=22% Similarity=0.239 Sum_probs=155.0
Q ss_pred CCCCeEEccCccccccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCccEEeCCCCeecccCcccccCCCCCCEE
Q 047927 647 TNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEIL 726 (1005)
Q Consensus 647 ~~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L 726 (1005)
++|++|++++|++++..+..+..++ +|++|++++|++++..+..|..+++|++|++++|++++..+..|..+++|++|
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~--~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFP--ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 105 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCT--TCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred CCccEEECCCCcccccCHhHhcccc--CCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEE
Confidence 4577777777777765555666666 67777777777777666677777777777777777777766777777777777
Q ss_pred ECCCCcCCCCcchhhhcCCCCcEEecCCCcCCcccCCCCCCCCCCCccEEEccCCcccccCChHHHhhhhhhhhccCCch
Q 047927 727 DLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQ 806 (1005)
Q Consensus 727 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~~~~~~p~~~~~~l~~~~~~~~~~~ 806 (1005)
++++|++++..+..++.+++|++|++++|++.+. ..|..+..+++|+.|++++|++++..+..+ ..+
T Consensus 106 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~l----------- 172 (276)
T 2z62_A 106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSF-KLPEYFSNLTNLEHLDLSSNKIQSIYCTDL-RVL----------- 172 (276)
T ss_dssp ECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCC-CCCGGGGGCTTCCEEECCSSCCCEECGGGG-HHH-----------
T ss_pred ECCCCCccccCchhcccCCCCCEEECcCCcccee-cCchhhccCCCCCEEECCCCCCCcCCHHHh-hhh-----------
Confidence 7777777776666677777777777777777642 126667777778888888887776443221 111
Q ss_pred hhhchhhheecccccccccccEEEEEcchHHHHHHhcccce-EEECCCCeeeccCcccccCCCCCCEEECCCCcCcccCc
Q 047927 807 SELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFT-SIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIP 885 (1005)
Q Consensus 807 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip 885 (1005)
..++.+. .|++++|++++..|..+.. .+|+.|+|++|++++..+
T Consensus 173 ----------------------------------~~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~ 217 (276)
T 2z62_A 173 ----------------------------------HQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPD 217 (276)
T ss_dssp ----------------------------------HTCTTCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCT
T ss_pred ----------------------------------hhccccceeeecCCCcccccCccccCC-CcccEEECCCCceeecCH
Confidence 1122233 7999999999776665554 489999999999997777
Q ss_pred hhhhcCCCCCEEeCCCCcCcccCc
Q 047927 886 SLIGNLREIESLDLSMNNLSGTIP 909 (1005)
Q Consensus 886 ~~~~~l~~L~~LdLs~N~l~~~ip 909 (1005)
..++++++|+.|+|++|.+++..|
T Consensus 218 ~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 218 GIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp TTTTTCCSCCEEECCSSCBCCCTT
T ss_pred hHhcccccccEEEccCCcccccCC
Confidence 778999999999999999997654
No 73
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.90 E-value=7.7e-23 Score=217.30 Aligned_cols=207 Identities=25% Similarity=0.229 Sum_probs=159.9
Q ss_pred CCCeEEccCccccccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCccEEeCCCCeecccCcccccCCCCCCEEE
Q 047927 648 NLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILD 727 (1005)
Q Consensus 648 ~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ 727 (1005)
..+.++++++.++ .+|..+. . ++++|++++|++++..+..|..+++|++|++++|+++...+..|..+++|++|+
T Consensus 17 ~~~~l~~~~~~l~-~ip~~~~--~--~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~ 91 (270)
T 2o6q_A 17 NKNSVDCSSKKLT-AIPSNIP--A--DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLW 91 (270)
T ss_dssp TTTEEECTTSCCS-SCCSCCC--T--TCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEE
T ss_pred CCCEEEccCCCCC-ccCCCCC--C--CCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEE
Confidence 4667888888877 4665443 2 678888888888777777788888888888888888766666677788888888
Q ss_pred CCCCcCCCCcchhhhcCCCCcEEecCCCcCCcccCCCCCCCCCCCccEEEccCCcccccCChHHHhhhhhhhhccCCchh
Q 047927 728 LGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQS 807 (1005)
Q Consensus 728 Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~~~~~~p~~~~~~l~~~~~~~~~~~~ 807 (1005)
+++|++++..+..|..+++|++|++++|++++.. +..+..
T Consensus 92 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~-------------------------------------- 131 (270)
T 2o6q_A 92 VTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLP--PRVFDS-------------------------------------- 131 (270)
T ss_dssp CCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCC--TTTTTT--------------------------------------
T ss_pred CCCCcCCcCCHhHcccccCCCEEECCCCccCeeC--HHHhCc--------------------------------------
Confidence 8888887766666777777777777777665432 222223
Q ss_pred hhchhhheecccccccccccEEEEEcchHHHHHHhcccceEEECCCCeeeccCcccccCCCCCCEEECCCCcCcccCchh
Q 047927 808 ELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSL 887 (1005)
Q Consensus 808 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~ 887 (1005)
+++|+.|+|++|++++..+..|+.+++|++|+|++|++++..|..
T Consensus 132 -----------------------------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 176 (270)
T 2o6q_A 132 -----------------------------------LTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGA 176 (270)
T ss_dssp -----------------------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTT
T ss_pred -----------------------------------CcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhH
Confidence 445666666677666655666888999999999999999877778
Q ss_pred hhcCCCCCEEeCCCCcCcccCcccccCCCCCCeEEccCCcccccCCC
Q 047927 888 IGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLNLSYNHLVGRIPT 934 (1005)
Q Consensus 888 ~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~ 934 (1005)
+.++++|+.|+|++|++++..+..+..+++|+.|++++|++.+.++.
T Consensus 177 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 223 (270)
T 2o6q_A 177 FDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNG 223 (270)
T ss_dssp TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSSS
T ss_pred hccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCcc
Confidence 99999999999999999988888899999999999999999998764
No 74
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.90 E-value=3.8e-27 Score=282.34 Aligned_cols=459 Identities=15% Similarity=0.072 Sum_probs=228.9
Q ss_pred CCCcccceeEECCCCCEEEEEcCCCCcccccCCCcccccccccceeecCCccCCC-CC-CCC------------cccCCC
Q 047927 40 NDCCTWSGVDCDEAGRVIGLDLSEESISAGIDNSSSLFSLKYLQSLNLAFNMFNA-TE-IPS------------GLGNLT 105 (1005)
Q Consensus 40 ~~~c~w~gv~c~~~~~v~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~Ls~~~~~~-~~-lp~------------~l~~l~ 105 (1005)
.-|++|.++.. ...+.+++..+..... ...+.++++|++|+++++.... .. .|. ....++
T Consensus 32 ~vck~W~~~~~---~~~~~l~~~~~~~~~~---~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~ 105 (594)
T 2p1m_B 32 LVCKSWYEIER---WCRRKVFIGNCYAVSP---ATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYT 105 (594)
T ss_dssp TSCHHHHHHHH---HHCCEEEESSTTSSCH---HHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCT
T ss_pred HHHHHHHHhhh---hhceEEeeccccccCH---HHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCC
Confidence 34668998832 2344566655432211 2346678899999999864211 00 111 124578
Q ss_pred CCcEEEcccCCCcCCCccccc-CCCCCcEEeCCCcc-cccCccccCCCChhhhhhcCccCceeecCCccCCCchhhHHHH
Q 047927 106 NLTTLNLSNAGFAGQIPIQVS-GMTRLVTLDLSGMY-FVRAPLKLENPNLSGLLQNLAELRELYLDGVNISAPGIEWCQA 183 (1005)
Q Consensus 106 ~L~~L~Ls~n~~~~~lp~~l~-~l~~L~~L~ls~n~-~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 183 (1005)
+|++|++++|.+.+..+..+. .+++|++|++++|. ++. ..+.....++++|++|+++++.+++.+..++..
T Consensus 106 ~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~-------~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~ 178 (594)
T 2p1m_B 106 WLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFST-------DGLAAIAATCRNLKELDLRESDVDDVSGHWLSH 178 (594)
T ss_dssp TCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEH-------HHHHHHHHHCTTCCEEECTTCEEECCCGGGGGG
T ss_pred CCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCH-------HHHHHHHHhCCCCCEEeCcCCccCCcchHHHHH
Confidence 899999998888766666665 68888888888873 221 112334557778888888877766655555554
Q ss_pred HhccCCCccEEEccCCCCCCCCCcc----ccCCCCCcEEECCCCCCCCCcchhccCCCCCcEEEccCCC-------CCcc
Q 047927 184 LSSLVPKLQVLSLSGCFLSGPVDPS----LSNLRSLSVIRLDMNDLYSPVPEFLADFSNLTSLYLSSCG-------LHGA 252 (1005)
Q Consensus 184 l~~l~~~L~~L~L~~n~~~~~~~~~----l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~-------l~~~ 252 (1005)
+...+++|++|++++|. ....... ..++++|++|++++|...+.++..+..+++|++|++..+. +. .
T Consensus 179 ~~~~~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~ 256 (594)
T 2p1m_B 179 FPDTYTSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYS-G 256 (594)
T ss_dssp SCTTCCCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHH-H
T ss_pred HhhcCCcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHH-H
Confidence 44444677777777665 1111111 2345677777777663333355666666777777755442 22 2
Q ss_pred CccccCCCCCCCEE-eCCCCCCCCCCCCcc-cCCCCCcEEEcccccccccC-chhhccCCCCCEEeecCCccCCC-CCcc
Q 047927 253 FPEKILQLPTLETL-DLSYNELLQGSLPDF-HQNLSLETLILSATNFSGIL-PDSIKNLKNLSRVEFYLCNFNGP-IPTS 328 (1005)
Q Consensus 253 ~p~~l~~l~~L~~L-~Ls~n~~~~~~~~~~-~~~~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~l~~n~~~~~-~~~~ 328 (1005)
++..+.++++|+.| .+.+.. ...++.+ ..+++|++|++++|.+++.. +..+..+++|++|++++| +... ++..
T Consensus 257 l~~~l~~~~~L~~Ls~~~~~~--~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l 333 (594)
T 2p1m_B 257 LSVALSGCKELRCLSGFWDAV--PAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVL 333 (594)
T ss_dssp HHHHHHTCTTCCEEECCBTCC--GGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHH
T ss_pred HHHHHhcCCCcccccCCcccc--hhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHH
Confidence 33355666667766 333221 1122222 13566666666666654332 222445666666666655 2211 1111
Q ss_pred CCCCCCCcEEECcCC---------cCccC-CCcc-cccCcccEEECCCCcCcCCCCcccccccccccEEEcC--C----C
Q 047927 329 MSDLSQLVYLDMSFN---------HFSGP-IPSL-HMFRNLAYLDLSYNIFTGGISSIGWEQLLNLFHVDLS--H----N 391 (1005)
Q Consensus 329 l~~l~~L~~L~L~~n---------~l~~~-~~~~-~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~--~----n 391 (1005)
...+++|++|++.++ .+++. +..+ ..+++|++|.+..+.+++.........+++|++|+++ + +
T Consensus 334 ~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~ 413 (594)
T 2p1m_B 334 ASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPD 413 (594)
T ss_dssp HHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCC
T ss_pred HHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcc
Confidence 223556666666332 12110 0000 1134455554444444432222111234455555554 1 2
Q ss_pred cCCCccCccCCCCCCCCEEeCcCcccccccccccccccccCCEEeCCCCccCCCCCccccC-cCCCcEEECCCCcceecc
Q 047927 392 NLGGSIPQSLFELPMVQHLLLADNQFDGHVTEISNASSSLLDTLDLSDNNLEGPIPLSFFE-LKNLKILLLSSNKFVGTI 470 (1005)
Q Consensus 392 ~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~-l~~L~~L~L~~n~l~~~~ 470 (1005)
.++. .|.. ..+. .....+++|++|++++ .+++..+..+.. +++|+.|++++|.+++..
T Consensus 414 ~l~~-~~~~------------------~~~~-~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~ 472 (594)
T 2p1m_B 414 YLTL-EPLD------------------IGFG-AIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLG 472 (594)
T ss_dssp TTTC-CCTH------------------HHHH-HHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHH
T ss_pred cccC-Cchh------------------hHHH-HHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHH
Confidence 2221 0000 0000 0012234555555544 333333333333 556666666666654332
Q ss_pred chhHHHhcCCCCeEeccCCeeeEecCCcccccCcccceEEcCCccCcC--CCCC-CCCCceeEEECcCCc
Q 047927 471 ELDAIQRLRNLFRLDLSYNRLAVVAGSSVYCFPPLLTTLSLASCKLSA--IPNL-RKQTKLYHLDLSDNQ 537 (1005)
Q Consensus 471 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~--l~~l-~~l~~L~~L~Ls~n~ 537 (1005)
.......+++|++|++++|.++...........++|++|++++|+++. +..+ ..++.|+...+..+.
T Consensus 473 ~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~ 542 (594)
T 2p1m_B 473 MHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERG 542 (594)
T ss_dssp HHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSS
T ss_pred HHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCC
Confidence 222224566666666666665322221122333456666666665531 1112 445677666665543
No 75
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.90 E-value=4.7e-25 Score=264.08 Aligned_cols=387 Identities=16% Similarity=0.126 Sum_probs=197.0
Q ss_pred ccccCCEEeCCCCccCCCCCcccc-CcCCCcEEECCCC-cceeccchhHHHhcCCCCeEeccCCeeeEecCCcccccCcc
Q 047927 428 SSSLLDTLDLSDNNLEGPIPLSFF-ELKNLKILLLSSN-KFVGTIELDAIQRLRNLFRLDLSYNRLAVVAGSSVYCFPPL 505 (1005)
Q Consensus 428 ~~~~L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~L~~n-~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~ 505 (1005)
.+++|++|++++|.+++..+..+. .+++|++|++++| .+...........+++|++|++++|.++......
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~------- 175 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHW------- 175 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGG-------
T ss_pred hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHH-------
Confidence 345677777777766655555554 5777888888777 3332212233456777777777777765432211
Q ss_pred cceEEcCCccCcCCCC-CCCCCceeEEECcCCcCCCCCC-hhhhhh--cCCcccEEeCCCC-cccCCCCCCccccCCccc
Q 047927 506 LTTLSLASCKLSAIPN-LRKQTKLYHLDLSDNQISGEIP-NWLWKI--GKDSFNHLNLSHN-LLVSLEQPYSISDLTSLS 580 (1005)
Q Consensus 506 L~~L~L~~n~l~~l~~-l~~l~~L~~L~Ls~n~l~~~~p-~~~~~~--~~~~L~~L~L~~n-~l~~~~~~~~~~~l~~L~ 580 (1005)
++. ...+++|++|++++|. . .+. ..+... ..++|++|++++| .+..+ +..+..+++|+
T Consensus 176 -------------l~~~~~~~~~L~~L~l~~~~-~-~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l--~~~~~~~~~L~ 238 (594)
T 2p1m_B 176 -------------LSHFPDTYTSLVSLNISCLA-S-EVSFSALERLVTRCPNLKSLKLNRAVPLEKL--ATLLQRAPQLE 238 (594)
T ss_dssp -------------GGGSCTTCCCCCEEECTTCC-S-CCCHHHHHHHHHHCTTCCEEECCTTSCHHHH--HHHHHHCTTCS
T ss_pred -------------HHHHhhcCCcCcEEEecccC-C-cCCHHHHHHHHHhCCCCcEEecCCCCcHHHH--HHHHhcCCcce
Confidence 111 2355677777777775 1 222 112111 1234444444444 11111 11123345555
Q ss_pred EEEeccCcccccCCCCCCCcceeeCcCCcCccCCCcchhcccCceEEEEecCCcccccCChhhhccCCCCeE-EccCccc
Q 047927 581 VLDLHSNQIQGKIPPLPPNAAYVDYSGNNFTSSIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVL-DLSYNYL 659 (1005)
Q Consensus 581 ~L~l~~n~l~~~~~~~~~~l~~L~ls~n~~~~~~p~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L-~Ls~N~l 659 (1005)
+|++..+... +..+.+.+ ++..+.++++|+.| .+.+...
T Consensus 239 ~L~l~~~~~~---------------------------------------~~~~~~~~-l~~~l~~~~~L~~Ls~~~~~~~ 278 (594)
T 2p1m_B 239 ELGTGGYTAE---------------------------------------VRPDVYSG-LSVALSGCKELRCLSGFWDAVP 278 (594)
T ss_dssp EEECSBCCCC---------------------------------------CCHHHHHH-HHHHHHTCTTCCEEECCBTCCG
T ss_pred EcccccccCc---------------------------------------cchhhHHH-HHHHHhcCCCcccccCCcccch
Confidence 5554433210 11112222 22345556666666 3332222
Q ss_pred cccCCchhhhcCcccccEEECCCCcCCcccc-CccCCCCCccEEeCCCCeeccc-CcccccCCCCCCEEECC--------
Q 047927 660 SGMIPTCLINMSDSQLGVLNLRRNNLNGTVS-ATFPANCSLRTLDLNGNQLEGM-VPKSLANCSVLEILDLG-------- 729 (1005)
Q Consensus 660 ~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~-~p~~l~~l~~L~~L~Ls-------- 729 (1005)
+.++..+..++ +|++|++++|.+++... ..+..+++|++|++++| +... ++.....+++|+.|+++
T Consensus 279 -~~l~~~~~~~~--~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~ 354 (594)
T 2p1m_B 279 -AYLPAVYSVCS--RLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVME 354 (594)
T ss_dssp -GGGGGGHHHHT--TCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSS
T ss_pred -hhHHHHHHhhC--CCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccc
Confidence 23344444444 56666666666543322 12345566666666666 3321 22222346666666662
Q ss_pred -CCcCCCCcchhhh-cCCCCcEEecCCCcCCcccCCCCCCC-CCCCccEEEcc--C----CcccccCChHHHhhhhhhhh
Q 047927 730 -NNQFDDTFPCWVK-NASRLHVLILRSNNFFGNISCPRYNV-SWPMLQIIDLA--S----NKFSGRLPQKWLLNLEAMMV 800 (1005)
Q Consensus 730 -~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~~-~l~~L~~L~ls--~----N~~~~~~p~~~~~~l~~~~~ 800 (1005)
.+.+++.....+. .+++|+.|.+..|.+++.. +..+. .+++|+.|+++ + |.+++......+
T Consensus 355 ~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~--~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~-------- 424 (594)
T 2p1m_B 355 PNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAA--LITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGF-------- 424 (594)
T ss_dssp CSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHH--HHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHH--------
T ss_pred cCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHH--HHHHHhhCCCcceeEeecccCCCcccccCCchhhHH--------
Confidence 2344433222232 3666666666666665432 12222 35666677666 2 233211111000
Q ss_pred ccCCchhhhchhhheecccccccccccEEEEEcchHHHHHHhcccceEEECCCCeeeccCcccccC-CCCCCEEECCCCc
Q 047927 801 DEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGL-LQSLCALNLSHNA 879 (1005)
Q Consensus 801 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~-l~~L~~L~Ls~N~ 879 (1005)
......+++|+.|+|++ .+++..+..++. +++|+.|+|++|.
T Consensus 425 ------------------------------------~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~ 467 (594)
T 2p1m_B 425 ------------------------------------GAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAG 467 (594)
T ss_dssp ------------------------------------HHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCC
T ss_pred ------------------------------------HHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCC
Confidence 01123456677777766 566555555554 6777777777777
Q ss_pred CcccCchhh-hcCCCCCEEeCCCCcCcccCcc-cccCCCCCCeEEccCCccc
Q 047927 880 LTGSIPSLI-GNLREIESLDLSMNNLSGTIPA-QLASLNFLSVLNLSYNHLV 929 (1005)
Q Consensus 880 l~g~ip~~~-~~l~~L~~LdLs~N~l~~~ip~-~l~~l~~L~~L~ls~N~l~ 929 (1005)
+++..+..+ ..+++|+.|+|++|.+++..+. ....+++|++|++++|+++
T Consensus 468 i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 468 DSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp SSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred CcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence 766555554 5577777777777777655444 3344677777777777764
No 76
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.89 E-value=2.8e-23 Score=220.79 Aligned_cols=183 Identities=22% Similarity=0.200 Sum_probs=117.3
Q ss_pred cCCCCCccEEeCCCCeecccCcccccCCCCCCEEECCCCcCCCCcchhhhcCCCCcEEecCCCcCCcccCCCCCCCCCCC
Q 047927 693 FPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPM 772 (1005)
Q Consensus 693 ~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~ 772 (1005)
+..+++|++|++++|++++. ..+..+++|++|++++|.+++..+..|+++++|++|++++|++++.. +..+..+++
T Consensus 59 l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~ 134 (272)
T 3rfs_A 59 IQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLP--DGVFDKLTN 134 (272)
T ss_dssp GGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCC--TTTTTTCTT
T ss_pred cccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccC--HHHhccCCC
Confidence 33444444444444444432 24444455555555555555444444445555555555555544332 333444555
Q ss_pred ccEEEccCCcccccCChHHHhhhhhhhhccCCchhhhchhhheecccccccccccEEEEEcchHHHHHHhcccceEEECC
Q 047927 773 LQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFS 852 (1005)
Q Consensus 773 L~~L~ls~N~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls 852 (1005)
|++|++++|++++..|..+ ..+++|+.|+++
T Consensus 135 L~~L~L~~n~l~~~~~~~~-------------------------------------------------~~l~~L~~L~l~ 165 (272)
T 3rfs_A 135 LTYLNLAHNQLQSLPKGVF-------------------------------------------------DKLTNLTELDLS 165 (272)
T ss_dssp CCEEECCSSCCCCCCTTTT-------------------------------------------------TTCTTCCEEECC
T ss_pred CCEEECCCCccCccCHHHh-------------------------------------------------ccCccCCEEECC
Confidence 5555555555543322110 134567778888
Q ss_pred CCeeeccCcccccCCCCCCEEECCCCcCcccCchhhhcCCCCCEEeCCCCcCcccCcccccCCCCCCeEEccCCcccccC
Q 047927 853 RNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLNLSYNHLVGRI 932 (1005)
Q Consensus 853 ~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~i 932 (1005)
+|++++..|..++.+++|++|+|++|++++..|..++.+++|+.|+|++|.+.+..| .|++|+++.|.++|.|
T Consensus 166 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~-------~l~~l~~~~n~~~g~i 238 (272)
T 3rfs_A 166 YNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP-------GIRYLSEWINKHSGVV 238 (272)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT-------TTHHHHHHHHHTGGGB
T ss_pred CCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCc-------HHHHHHHHHHhCCCcc
Confidence 888887777778889999999999999998888888999999999999999886644 6888999999999999
Q ss_pred CCC
Q 047927 933 PTS 935 (1005)
Q Consensus 933 p~~ 935 (1005)
|..
T Consensus 239 p~~ 241 (272)
T 3rfs_A 239 RNS 241 (272)
T ss_dssp BCT
T ss_pred cCc
Confidence 964
No 77
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.89 E-value=2e-23 Score=226.79 Aligned_cols=230 Identities=20% Similarity=0.176 Sum_probs=174.1
Q ss_pred CCCeEEccCccccccC-Cc--hhhhcCcccccEEECCCCcCCccccCcc--CCCCCccEEeCCCCeecccCc----cccc
Q 047927 648 NLLVLDLSYNYLSGMI-PT--CLINMSDSQLGVLNLRRNNLNGTVSATF--PANCSLRTLDLNGNQLEGMVP----KSLA 718 (1005)
Q Consensus 648 ~L~~L~Ls~N~l~~~~-p~--~~~~l~~~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~L~~N~l~~~~p----~~l~ 718 (1005)
.++.+.+.++.++... .. .+..++ +|++|++++|.+.+..|..+ ..+++|++|+|++|++++..+ ..+.
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~--~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~ 142 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYS--RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW 142 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHS--CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccC--ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh
Confidence 4566666666654211 11 112233 68888888888887777777 778888888888888886544 3455
Q ss_pred CCCCCCEEECCCCcCCCCcchhhhcCCCCcEEecCCCcCCcc--cCCCCCCCCCCCccEEEccCCcccccCChHHHhhhh
Q 047927 719 NCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGN--ISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLE 796 (1005)
Q Consensus 719 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~--~~~~~~~~~l~~L~~L~ls~N~~~~~~p~~~~~~l~ 796 (1005)
.+++|++|++++|++++..|..|+.+++|++|+|++|++.+. +..+..+..+++|++|++++|+++. +|...
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~----- 216 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVC----- 216 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHH-----
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHH-----
Confidence 788888888888888888888888888888888888887653 2123345678899999999998863 12110
Q ss_pred hhhhccCCchhhhchhhheecccccccccccEEEEEcchHHHHHHhcccceEEECCCCeeeccCcccccCC---CCCCEE
Q 047927 797 AMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLL---QSLCAL 873 (1005)
Q Consensus 797 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l---~~L~~L 873 (1005)
...+..++.|+.|||++|++++.+|+.++.+ ++|++|
T Consensus 217 ----------------------------------------~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L 256 (310)
T 4glp_A 217 ----------------------------------------AALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSL 256 (310)
T ss_dssp ----------------------------------------HHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCE
T ss_pred ----------------------------------------HHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEE
Confidence 0112356889999999999999989888887 699999
Q ss_pred ECCCCcCcccCchhhhcCCCCCEEeCCCCcCcccCcccccCCCCCCeEEccCCcccc
Q 047927 874 NLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLNLSYNHLVG 930 (1005)
Q Consensus 874 ~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g 930 (1005)
+|++|+|+ .+|..+. ++|+.|||++|+|++. |. +..+++|+.|++++|+++.
T Consensus 257 ~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 257 NLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp ECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred ECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 99999999 7888775 8999999999999975 43 6788999999999999974
No 78
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.89 E-value=8.2e-23 Score=217.22 Aligned_cols=210 Identities=18% Similarity=0.146 Sum_probs=159.9
Q ss_pred hhccCCCCeEEccCccccccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCccEEeCCCCeecccCcccccCCCC
Q 047927 643 ICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSV 722 (1005)
Q Consensus 643 l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 722 (1005)
+..+++|+.|++++|.++. + ..+..++ +|++|++++|++++. ..+..+++|++|++++|.+++..+..|..+++
T Consensus 37 ~~~l~~L~~L~l~~~~i~~-~-~~l~~l~--~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 110 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKS-V-QGIQYLP--NVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTN 110 (272)
T ss_dssp HHHHTTCCEEECTTSCCCC-C-TTGGGCT--TCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTT
T ss_pred cccccceeeeeeCCCCccc-c-cccccCC--CCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcC
Confidence 4566777777777777663 2 2456666 777777777777763 35677777788888888777776677777788
Q ss_pred CCEEECCCCcCCCCcchhhhcCCCCcEEecCCCcCCcccCCCCCCCCCCCccEEEccCCcccccCChHHHhhhhhhhhcc
Q 047927 723 LEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDE 802 (1005)
Q Consensus 723 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~~~~~~p~~~~~~l~~~~~~~ 802 (1005)
|++|++++|++++..+..|+.+++|++|++++|++++.. +..+..+++|+.|++++|++++..|..+
T Consensus 111 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~----------- 177 (272)
T 3rfs_A 111 LKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLP--KGVFDKLTNLTELDLSYNQLQSLPEGVF----------- 177 (272)
T ss_dssp CCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC--TTTTTTCTTCCEEECCSSCCCCCCTTTT-----------
T ss_pred CCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccC--HHHhccCccCCEEECCCCCcCccCHHHh-----------
Confidence 888888888877777777777788888888888777544 4456777888888888888775444211
Q ss_pred CCchhhhchhhheecccccccccccEEEEEcchHHHHHHhcccceEEECCCCeeeccCcccccCCCCCCEEECCCCcCcc
Q 047927 803 GRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTG 882 (1005)
Q Consensus 803 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g 882 (1005)
..+++|+.|++++|++++..|..++.+++|+.|+|++|.+.+
T Consensus 178 --------------------------------------~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 219 (272)
T 3rfs_A 178 --------------------------------------DKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC 219 (272)
T ss_dssp --------------------------------------TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred --------------------------------------cCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc
Confidence 135778899999999998888889999999999999999986
Q ss_pred cCchhhhcCCCCCEEeCCCCcCcccCcccccCCC
Q 047927 883 SIPSLIGNLREIESLDLSMNNLSGTIPAQLASLN 916 (1005)
Q Consensus 883 ~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~ 916 (1005)
.. ++|+.|+++.|+++|.+|.+++.+.
T Consensus 220 ~~-------~~l~~l~~~~n~~~g~ip~~~~~~~ 246 (272)
T 3rfs_A 220 TC-------PGIRYLSEWINKHSGVVRNSAGSVA 246 (272)
T ss_dssp CT-------TTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred cC-------cHHHHHHHHHHhCCCcccCcccccC
Confidence 54 4688999999999999999988764
No 79
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.89 E-value=5.1e-24 Score=236.87 Aligned_cols=260 Identities=20% Similarity=0.222 Sum_probs=158.9
Q ss_pred EEecCCcccccCChhhhccCCCCeEEccCccccccCC----chhhhcCcccccEEECCCCcCCccccCccCCC-----CC
Q 047927 628 FSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIP----TCLINMSDSQLGVLNLRRNNLNGTVSATFPAN-----CS 698 (1005)
Q Consensus 628 L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p----~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l-----~~ 698 (1005)
+.++.|.+++.+|..+...++|++|||++|.+++..+ ..+..++. +|++|+|++|++++..+..+..+ ++
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~-~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPA-SVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCT-TCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCC-ceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 4455555565555555555556666666666654444 34444432 46666666666665555444443 66
Q ss_pred ccEEeCCCCeecccCccc----ccCC-CCCCEEECCCCcCCCCcchhhhc-----CCCCcEEecCCCcCCccc--CCCCC
Q 047927 699 LRTLDLNGNQLEGMVPKS----LANC-SVLEILDLGNNQFDDTFPCWVKN-----ASRLHVLILRSNNFFGNI--SCPRY 766 (1005)
Q Consensus 699 L~~L~L~~N~l~~~~p~~----l~~l-~~L~~L~Ls~N~l~~~~p~~~~~-----l~~L~~L~L~~N~l~~~~--~~~~~ 766 (1005)
|++|+|++|++++..+.. +..+ ++|++|++++|++++..+..+.. .++|++|+|++|++.+.. ..+..
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 666666666666555543 3333 66777777777766655544332 246777777777665321 00222
Q ss_pred CCCCC-CccEEEccCCcccccCChHHHhhhhhhhhccCCchhhhchhhheecccccccccccEEEEEcchHHHHHHhc-c
Q 047927 767 NVSWP-MLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKIL-N 844 (1005)
Q Consensus 767 ~~~l~-~L~~L~ls~N~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 844 (1005)
+..++ +|+.|++++|++++..+..+...+ ... +
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l---------------------------------------------~~~~~ 196 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFL---------------------------------------------ASIPA 196 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHH---------------------------------------------HTSCT
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHH---------------------------------------------HhCCC
Confidence 23343 777777877777765554332111 122 4
Q ss_pred cceEEECCCCeeecc----CcccccC-CCCCCEEECCCCcCcccCch----hhhcCCCCCEEeCCCCcCcccC-------
Q 047927 845 IFTSIDFSRNNFEGP----IPEEMGL-LQSLCALNLSHNALTGSIPS----LIGNLREIESLDLSMNNLSGTI------- 908 (1005)
Q Consensus 845 ~l~~L~Ls~N~l~g~----ip~~~~~-l~~L~~L~Ls~N~l~g~ip~----~~~~l~~L~~LdLs~N~l~~~i------- 908 (1005)
.|+.|||++|++++. +|..+.. .++|++|||++|++++..+. .+..+++|+.|+|++|.+++..
T Consensus 197 ~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l 276 (362)
T 3goz_A 197 SVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKAL 276 (362)
T ss_dssp TCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHH
T ss_pred CCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHH
Confidence 678888888888763 4555555 35888888888888875553 3456688888888888855443
Q ss_pred cccccCCCCCCeEEccCCcccccCC
Q 047927 909 PAQLASLNFLSVLNLSYNHLVGRIP 933 (1005)
Q Consensus 909 p~~l~~l~~L~~L~ls~N~l~g~ip 933 (1005)
+..+.+++.|++||+++|++.+..|
T Consensus 277 ~~~~~~l~~L~~LdL~~N~l~~~~~ 301 (362)
T 3goz_A 277 GAAFPNIQKIILVDKNGKEIHPSHS 301 (362)
T ss_dssp HTTSTTCCEEEEECTTSCBCCGGGC
T ss_pred HHHhccCCceEEEecCCCcCCCcch
Confidence 3467788888889999998877633
No 80
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.88 E-value=5.2e-22 Score=212.48 Aligned_cols=206 Identities=23% Similarity=0.236 Sum_probs=140.7
Q ss_pred hhccCCCCeEEccCccccccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCccEEeCCCCeecccCcccccCCCC
Q 047927 643 ICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSV 722 (1005)
Q Consensus 643 l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 722 (1005)
+.++++++.+++++|.++ .+|..+. + +++.|++++|.+++..+..|..+++|++|+|++|.+++..+. ..+++
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~--~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~ 78 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP--K--DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPV 78 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC--T--TCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTT
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC--C--CCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCc
Confidence 445666777777777776 4554443 2 566777777777666666666666777777777766654322 55666
Q ss_pred CCEEECCCCcCCCCcchhhhcCCCCcEEecCCCcCCcccCCCCCCCCCCCccEEEccCCcccccCChHHHhhhhhhhhcc
Q 047927 723 LEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDE 802 (1005)
Q Consensus 723 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~~~~~~p~~~~~~l~~~~~~~ 802 (1005)
|++|++++|+++ .+|..+..+++|++|++++|++++.. +..+.
T Consensus 79 L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~--~~~~~---------------------------------- 121 (290)
T 1p9a_G 79 LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLP--LGALR---------------------------------- 121 (290)
T ss_dssp CCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCC--SSTTT----------------------------------
T ss_pred CCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccC--HHHHc----------------------------------
Confidence 666666666665 34445555555555555555554321 12222
Q ss_pred CCchhhhchhhheecccccccccccEEEEEcchHHHHHHhcccceEEECCCCeeeccCcccccCCCCCCEEECCCCcCcc
Q 047927 803 GRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTG 882 (1005)
Q Consensus 803 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g 882 (1005)
.+++|+.|+|++|++++..|..|..+++|+.|+|++|+|++
T Consensus 122 ---------------------------------------~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 162 (290)
T 1p9a_G 122 ---------------------------------------GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE 162 (290)
T ss_dssp ---------------------------------------TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSC
T ss_pred ---------------------------------------CCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCc
Confidence 24556667777777776666677888899999999999986
Q ss_pred cCchhhhcCCCCCEEeCCCCcCcccCcccccCCCCCCeEEccCCcccccC
Q 047927 883 SIPSLIGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLNLSYNHLVGRI 932 (1005)
Q Consensus 883 ~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~i 932 (1005)
..+..+..+++|+.|+|++|+++ .+|..+..+..|+.+++++|++.|.+
T Consensus 163 l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~c 211 (290)
T 1p9a_G 163 LPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNC 211 (290)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSG
T ss_pred cCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCcC
Confidence 65566788999999999999998 67888888889999999999998764
No 81
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.87 E-value=2.2e-21 Score=207.58 Aligned_cols=214 Identities=21% Similarity=0.243 Sum_probs=185.4
Q ss_pred cccCCcccEEEeccCcccccCCCCCCCcceeeCcCCcCccCCCcchhcccCceEEEEecCCcccccCChhhhccCCCCeE
Q 047927 573 ISDLTSLSVLDLHSNQIQGKIPPLPPNAAYVDYSGNNFTSSIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVL 652 (1005)
Q Consensus 573 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ls~n~~~~~~p~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L 652 (1005)
+.+++++++++++++.++...+..+.+++.|++++|.+++..|..+. .++.|++|++++|.+++..+. ..+++|+.|
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~~~~l~~L~L~~N~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L 82 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLM-PYTRLTQLNLDRAELTKLQVD--GTLPVLGTL 82 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCCCTTCCEEECTTSCCSEEEGGGGT-TCTTCCEEECTTSCCCEEECC--SCCTTCCEE
T ss_pred ccccCCccEEECCCCCCCcCCCCCCCCCCEEEcCCCcCCccCHHHhh-cCCCCCEEECCCCccCcccCC--CCCCcCCEE
Confidence 44567788888888888765555677888888888888866555554 589999999999999976443 789999999
Q ss_pred EccCccccccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCccEEeCCCCeecccCcccccCCCCCCEEECCCCc
Q 047927 653 DLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQ 732 (1005)
Q Consensus 653 ~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 732 (1005)
++++|+++ .+|..+..++ +|++|++++|++++..+..|..+++|++|+|++|++++..+..|..+++|+.|++++|+
T Consensus 83 ~Ls~N~l~-~l~~~~~~l~--~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 159 (290)
T 1p9a_G 83 DLSHNQLQ-SLPLLGQTLP--ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN 159 (290)
T ss_dssp ECCSSCCS-SCCCCTTTCT--TCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred ECCCCcCC-cCchhhccCC--CCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc
Confidence 99999998 7888888888 99999999999999999999999999999999999998888889999999999999999
Q ss_pred CCCCcchhhhcCCCCcEEecCCCcCCcccCCCCCCCCCCCccEEEccCCcccccCChHHHhhh
Q 047927 733 FDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNL 795 (1005)
Q Consensus 733 l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~~~~~~p~~~~~~l 795 (1005)
+++..+..|..+++|+.|+|++|+++. + |..+...++|+.+++++|++.+.+...++..|
T Consensus 160 l~~l~~~~~~~l~~L~~L~L~~N~l~~-i--p~~~~~~~~L~~l~L~~Np~~C~c~~~~l~~w 219 (290)
T 1p9a_G 160 LTELPAGLLNGLENLDTLLLQENSLYT-I--PKGFFGSHLLPFAFLHGNPWLCNCEILYFRRW 219 (290)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCCCC-C--CTTTTTTCCCSEEECCSCCBCCSGGGHHHHHH
T ss_pred CCccCHHHhcCcCCCCEEECCCCcCCc-c--ChhhcccccCCeEEeCCCCccCcCccHHHHHH
Confidence 998888889999999999999999983 3 88888999999999999999987765555443
No 82
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.87 E-value=4.6e-21 Score=203.52 Aligned_cols=206 Identities=19% Similarity=0.188 Sum_probs=174.5
Q ss_pred cccEEEeccCcccccCCCCCCCcceeeCcCCcCccCCCcchhcccCceEEEEecCCcccccCChhhhccCCCCeEEccCc
Q 047927 578 SLSVLDLHSNQIQGKIPPLPPNAAYVDYSGNNFTSSIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYN 657 (1005)
Q Consensus 578 ~L~~L~l~~n~l~~~~~~~~~~l~~L~ls~n~~~~~~p~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N 657 (1005)
..+.++++++.++......+.+++.|++++|++++. |...+..++.|++|++++|.++...+..|..+++|++|++++|
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n 95 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSL-PSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN 95 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCCTTCSEEECCSSCCSCC-CTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSS
T ss_pred CCCEEEccCCCCCccCCCCCCCCCEEECcCCCCCee-CHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCC
Confidence 356666666666643223455677777777777643 3333345889999999999999777777899999999999999
Q ss_pred cccccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCccEEeCCCCeecccCcccccCCCCCCEEECCCCcCCCCc
Q 047927 658 YLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTF 737 (1005)
Q Consensus 658 ~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~ 737 (1005)
++++..+..+..++ +|++|++++|++++..+..|..+++|++|+|++|++++..+..|..+++|+.|++++|++++..
T Consensus 96 ~l~~~~~~~~~~l~--~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 173 (270)
T 2o6q_A 96 KLQALPIGVFDQLV--NLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVP 173 (270)
T ss_dssp CCCCCCTTTTTTCS--SCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred cCCcCCHhHccccc--CCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeC
Confidence 99977777788887 9999999999999999999999999999999999999887788999999999999999999988
Q ss_pred chhhhcCCCCcEEecCCCcCCcccCCCCCCCCCCCccEEEccCCcccccCC
Q 047927 738 PCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLP 788 (1005)
Q Consensus 738 p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~~~~~~p 788 (1005)
+..|..+++|++|++++|++++.. +..+..+++|+.|++++|++.+.++
T Consensus 174 ~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~l~~N~~~c~c~ 222 (270)
T 2o6q_A 174 EGAFDKLTELKTLKLDNNQLKRVP--EGAFDSLEKLKMLQLQENPWDCTCN 222 (270)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCC--TTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred hhHhccCCCcCEEECCCCcCCcCC--HHHhccccCCCEEEecCCCeeCCCc
Confidence 888999999999999999998654 5567889999999999999998876
No 83
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.87 E-value=1.4e-23 Score=236.12 Aligned_cols=248 Identities=16% Similarity=0.165 Sum_probs=172.2
Q ss_pred cCChhhhccCCCCeEEccCccccccCCch----hhhcCcccccEEECCCCc---CCccccCcc-------CCCCCccEEe
Q 047927 638 VIPESICNATNLLVLDLSYNYLSGMIPTC----LINMSDSQLGVLNLRRNN---LNGTVSATF-------PANCSLRTLD 703 (1005)
Q Consensus 638 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~----~~~l~~~~L~~L~L~~n~---l~~~~~~~~-------~~l~~L~~L~ 703 (1005)
.++..+..+++|+.|+|++|.+++..+.. +..++ +|++|+|++|. +++.+|..+ ..+++|++|+
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~--~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~ 100 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKK--DLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVR 100 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCT--TCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEE
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCC--CccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEE
Confidence 34556666677777777777766543332 44455 67777777643 333444333 5677788888
Q ss_pred CCCCeecc----cCcccccCCCCCCEEECCCCcCCCCcchhhhc----C---------CCCcEEecCCCcCC-cccCCC-
Q 047927 704 LNGNQLEG----MVPKSLANCSVLEILDLGNNQFDDTFPCWVKN----A---------SRLHVLILRSNNFF-GNISCP- 764 (1005)
Q Consensus 704 L~~N~l~~----~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~----l---------~~L~~L~L~~N~l~-~~~~~~- 764 (1005)
|++|.+++ .+|..+..+++|++|+|++|.+++..+..+.. + ++|++|++++|++. +.+ +
T Consensus 101 Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~--~~ 178 (386)
T 2ca6_A 101 LSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSM--KE 178 (386)
T ss_dssp CCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGH--HH
T ss_pred CCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHH--HH
Confidence 88887776 46667777788888888888776544433333 3 77888888888776 222 2
Q ss_pred --CCCCCCCCccEEEccCCcccccCChHHHhhhhhhhhccCCchhhhchhhheecccccccccccEEEEEcchHHHHHHh
Q 047927 765 --RYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKI 842 (1005)
Q Consensus 765 --~~~~~l~~L~~L~ls~N~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 842 (1005)
..+..+++|+.|++++|+++..--..+.. ..+..
T Consensus 179 l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~--------------------------------------------~~l~~ 214 (386)
T 2ca6_A 179 WAKTFQSHRLLHTVKMVQNGIRPEGIEHLLL--------------------------------------------EGLAY 214 (386)
T ss_dssp HHHHHHHCTTCCEEECCSSCCCHHHHHHHHH--------------------------------------------TTGGG
T ss_pred HHHHHHhCCCcCEEECcCCCCCHhHHHHHHH--------------------------------------------HHhhc
Confidence 24456678888888888775210000000 01124
Q ss_pred cccceEEECCCCeee----ccCcccccCCCCCCEEECCCCcCccc----Cchhhh--cCCCCCEEeCCCCcCcc----cC
Q 047927 843 LNIFTSIDFSRNNFE----GPIPEEMGLLQSLCALNLSHNALTGS----IPSLIG--NLREIESLDLSMNNLSG----TI 908 (1005)
Q Consensus 843 ~~~l~~L~Ls~N~l~----g~ip~~~~~l~~L~~L~Ls~N~l~g~----ip~~~~--~l~~L~~LdLs~N~l~~----~i 908 (1005)
+++|+.|+|++|.++ +.+|..+..+++|++|+|++|++++. +|..+. .+++|+.|+|++|.+++ .+
T Consensus 215 ~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l 294 (386)
T 2ca6_A 215 CQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTL 294 (386)
T ss_dssp CTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHH
T ss_pred CCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHH
Confidence 677889999999986 67888899999999999999999876 677773 48999999999999998 58
Q ss_pred cccc-cCCCCCCeEEccCCcccccCC
Q 047927 909 PAQL-ASLNFLSVLNLSYNHLVGRIP 933 (1005)
Q Consensus 909 p~~l-~~l~~L~~L~ls~N~l~g~ip 933 (1005)
|..+ .++++|++|++++|++++..|
T Consensus 295 ~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 295 KTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp HHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred HHHHHhcCCCceEEEccCCcCCcchh
Confidence 8887 678999999999999998765
No 84
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.87 E-value=3.4e-21 Score=202.09 Aligned_cols=89 Identities=19% Similarity=0.201 Sum_probs=70.8
Q ss_pred ceEEECCCCeeeccCcccccCCCCCCEEECCCCcCcccCchhhhcCCCCCEEeCCCCcCcccCcccccCCCCCCeEEccC
Q 047927 846 FTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLNLSY 925 (1005)
Q Consensus 846 l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~ 925 (1005)
|+.|+|++|++++..|..|+.+++|++|+|++|++++..|..++.+++|+.|||++|++++..|..+..+++|++|++++
T Consensus 109 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 188 (251)
T 3m19_A 109 LDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFG 188 (251)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeC
Confidence 34444444444444455577888899999999999977777888999999999999999988888899999999999999
Q ss_pred CcccccCCC
Q 047927 926 NHLVGRIPT 934 (1005)
Q Consensus 926 N~l~g~ip~ 934 (1005)
|+++|..+.
T Consensus 189 N~~~c~~~~ 197 (251)
T 3m19_A 189 NQFDCSRCE 197 (251)
T ss_dssp CCBCTTSTT
T ss_pred CceeCCccc
Confidence 999987554
No 85
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.87 E-value=5.5e-23 Score=228.54 Aligned_cols=262 Identities=18% Similarity=0.166 Sum_probs=188.9
Q ss_pred eeCcCCcCccCCCcchhcccCceEEEEecCCcccccCC----hhhhccC-CCCeEEccCccccccCCchhhhc-----Cc
Q 047927 603 VDYSGNNFTSSIPVDIGSFMSLSIFFSFSKNSLTGVIP----ESICNAT-NLLVLDLSYNYLSGMIPTCLINM-----SD 672 (1005)
Q Consensus 603 L~ls~n~~~~~~p~~~~~~~~~L~~L~l~~n~l~~~~p----~~l~~l~-~L~~L~Ls~N~l~~~~p~~~~~l-----~~ 672 (1005)
.+++.|++++.+|.. ......+++|++++|.+++..+ ..+..++ +|++|+|++|.+++..+..+..+ +
T Consensus 3 ~~ls~n~~~~~~~~~-~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~- 80 (362)
T 3goz_A 3 YKLTLHPGSNPVEEF-TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA- 80 (362)
T ss_dssp EECCCCTTCCHHHHH-HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCT-
T ss_pred cccccccchHHHHHH-HhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCC-
Confidence 345555555555543 3345568888888888887666 6777787 89999999998887777777765 5
Q ss_pred ccccEEECCCCcCCccccCccC----CC-CCccEEeCCCCeecccCcccc----cC-CCCCCEEECCCCcCCCCc----c
Q 047927 673 SQLGVLNLRRNNLNGTVSATFP----AN-CSLRTLDLNGNQLEGMVPKSL----AN-CSVLEILDLGNNQFDDTF----P 738 (1005)
Q Consensus 673 ~~L~~L~L~~n~l~~~~~~~~~----~l-~~L~~L~L~~N~l~~~~p~~l----~~-l~~L~~L~Ls~N~l~~~~----p 738 (1005)
+|++|++++|++++..+..+. .+ ++|++|+|++|++++..+..+ .. .++|++|++++|++++.. +
T Consensus 81 -~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~ 159 (362)
T 3goz_A 81 -NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELI 159 (362)
T ss_dssp -TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHH
T ss_pred -CccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHH
Confidence 789999999998877665433 33 789999999999887766554 33 368999999999988644 3
Q ss_pred hhhhcCC-CCcEEecCCCcCCcccCCCC----CCCCC-CCccEEEccCCcccccCChHHHhhhhhhhhccCCchhhhchh
Q 047927 739 CWVKNAS-RLHVLILRSNNFFGNISCPR----YNVSW-PMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHL 812 (1005)
Q Consensus 739 ~~~~~l~-~L~~L~L~~N~l~~~~~~~~----~~~~l-~~L~~L~ls~N~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~ 812 (1005)
.++..++ +|++|+|++|++++.. +. .+... ++|+.||+++|++.+.....+...
T Consensus 160 ~~l~~~~~~L~~L~Ls~n~l~~~~--~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~------------------ 219 (362)
T 3goz_A 160 QILAAIPANVNSLNLRGNNLASKN--CAELAKFLASIPASVTSLDLSANLLGLKSYAELAYI------------------ 219 (362)
T ss_dssp HHHHTSCTTCCEEECTTSCGGGSC--HHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHH------------------
T ss_pred HHHhcCCccccEeeecCCCCchhh--HHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHH------------------
Confidence 4455565 8999999999887543 22 23344 589999999999876433222111
Q ss_pred hheecccccccccccEEEEEcchHHHHHHhcccceEEECCCCeeeccCc----ccccCCCCCCEEECCCCcCccc-----
Q 047927 813 QYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIP----EEMGLLQSLCALNLSHNALTGS----- 883 (1005)
Q Consensus 813 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip----~~~~~l~~L~~L~Ls~N~l~g~----- 883 (1005)
+....+.|+.|||++|.+++..+ ..+..+++|++|+|++|.+.+.
T Consensus 220 --------------------------l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~ 273 (362)
T 3goz_A 220 --------------------------FSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQC 273 (362)
T ss_dssp --------------------------HHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHH
T ss_pred --------------------------HhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHH
Confidence 11123578999999999997655 3457789999999999995543
Q ss_pred --CchhhhcCCCCCEEeCCCCcCcccCccccc
Q 047927 884 --IPSLIGNLREIESLDLSMNNLSGTIPAQLA 913 (1005)
Q Consensus 884 --ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~ 913 (1005)
++..+.++++|+.||+++|++.+..|..+.
T Consensus 274 ~~l~~~~~~l~~L~~LdL~~N~l~~~~~~~~~ 305 (362)
T 3goz_A 274 KALGAAFPNIQKIILVDKNGKEIHPSHSIPIS 305 (362)
T ss_dssp HHHHTTSTTCCEEEEECTTSCBCCGGGCHHHH
T ss_pred HHHHHHhccCCceEEEecCCCcCCCcchHHHH
Confidence 344677888999999999999987665543
No 86
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.86 E-value=1.4e-22 Score=223.61 Aligned_cols=250 Identities=16% Similarity=0.213 Sum_probs=179.1
Q ss_pred eEEEEecCCcccccCChhhhcc--CCCCeEEccCccccccCCchhhhcCcccccEEECCCCcCCcc-ccCccCCCCCccE
Q 047927 625 SIFFSFSKNSLTGVIPESICNA--TNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGT-VSATFPANCSLRT 701 (1005)
Q Consensus 625 L~~L~l~~n~l~~~~p~~l~~l--~~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~ 701 (1005)
.+.++++++.+. +..+..+ ++++.|++++|.+.+..+. +..++ +|++|++++|.+++. ++..+..+++|++
T Consensus 49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~--~L~~L~L~~~~l~~~~~~~~~~~~~~L~~ 122 (336)
T 2ast_B 49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPF--RVQHMDLSNSVIEVSTLHGILSQCSKLQN 122 (336)
T ss_dssp SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCB--CCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCC--CCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence 455666666654 3455566 7788888888888766554 34454 788888888887765 6667777888888
Q ss_pred EeCCCCeecccCcccccCCCCCCEEECCCC-cCCCC-cchhhhcCCCCcEEecCCC-cCCcc-cCCCCCCCCCC-CccEE
Q 047927 702 LDLNGNQLEGMVPKSLANCSVLEILDLGNN-QFDDT-FPCWVKNASRLHVLILRSN-NFFGN-ISCPRYNVSWP-MLQII 776 (1005)
Q Consensus 702 L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N-~l~~~-~p~~~~~l~~L~~L~L~~N-~l~~~-~~~~~~~~~l~-~L~~L 776 (1005)
|++++|.+++..+..+..+++|++|++++| .+++. ++..+.++++|++|++++| .+++. + +..+..++ +|+.|
T Consensus 123 L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~--~~~~~~l~~~L~~L 200 (336)
T 2ast_B 123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHV--QVAVAHVSETITQL 200 (336)
T ss_dssp EECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHH--HHHHHHSCTTCCEE
T ss_pred EeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHH--HHHHHhcccCCCEE
Confidence 888888888777778888888888888888 56653 6666778888888888888 77643 2 44556677 88888
Q ss_pred EccCCc--cc-ccCChHHHhhhhhhhhccCCchhhhchhhheecccccccccccEEEEEcchHHHHHHhcccceEEECCC
Q 047927 777 DLASNK--FS-GRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSR 853 (1005)
Q Consensus 777 ~ls~N~--~~-~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~ 853 (1005)
++++|. ++ +.+|. ....+++|+.|++++
T Consensus 201 ~l~~~~~~~~~~~l~~-------------------------------------------------~~~~~~~L~~L~l~~ 231 (336)
T 2ast_B 201 NLSGYRKNLQKSDLST-------------------------------------------------LVRRCPNLVHLDLSD 231 (336)
T ss_dssp ECCSCGGGSCHHHHHH-------------------------------------------------HHHHCTTCSEEECTT
T ss_pred EeCCCcccCCHHHHHH-------------------------------------------------HHhhCCCCCEEeCCC
Confidence 888884 33 11221 122467889999999
Q ss_pred Ce-eeccCcccccCCCCCCEEECCCCc-CcccCchhhhcCCCCCEEeCCCCcCcccCcccccCC-CCCCeEEccCCcccc
Q 047927 854 NN-FEGPIPEEMGLLQSLCALNLSHNA-LTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLASL-NFLSVLNLSYNHLVG 930 (1005)
Q Consensus 854 N~-l~g~ip~~~~~l~~L~~L~Ls~N~-l~g~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l-~~L~~L~ls~N~l~g 930 (1005)
|. +++..+..++.+++|++|+|++|. ++......++++++|+.|++++| ++.. .+..+ ..+..|++++|+++|
T Consensus 232 ~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~---~~~~l~~~l~~L~l~~n~l~~ 307 (336)
T 2ast_B 232 SVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDG---TLQLLKEALPHLQINCSHFTT 307 (336)
T ss_dssp CTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTT---CHHHHHHHSTTSEESCCCSCC
T ss_pred CCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHH---HHHHHHhhCcceEEecccCcc
Confidence 98 788888888999999999999995 33222236788899999999988 4322 34444 247778889999999
Q ss_pred cCCCC
Q 047927 931 RIPTS 935 (1005)
Q Consensus 931 ~ip~~ 935 (1005)
..|..
T Consensus 308 ~~~~~ 312 (336)
T 2ast_B 308 IARPT 312 (336)
T ss_dssp TTCSS
T ss_pred ccCCc
Confidence 88753
No 87
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.85 E-value=1.2e-20 Score=204.11 Aligned_cols=194 Identities=21% Similarity=0.321 Sum_probs=120.7
Q ss_pred hccCCCCeEEccCccccccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCccEEeCCCCeecccCcccccCCCCC
Q 047927 644 CNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVL 723 (1005)
Q Consensus 644 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L 723 (1005)
..+++|+.|++++|.++. +| .+..++ +|++|++++|.+++..+ +..+++|++|++++|++++. ..+..+++|
T Consensus 38 ~~l~~L~~L~l~~~~i~~-l~-~~~~l~--~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L 109 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVTT-IE-GVQYLN--NLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSI 109 (308)
T ss_dssp HHHHTCCEEECTTSCCCC-CT-TGGGCT--TCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTC
T ss_pred HHcCCcCEEEeeCCCccC-ch-hhhccC--CCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCC
Confidence 345566666666666552 33 344444 55555555555554443 55555555555555555532 245555555
Q ss_pred CEEECCCCcCCCCcchhhhcCCCCcEEecCCCcCCcccCCCCCCCCCCCccEEEccCCcccccCChHHHhhhhhhhhccC
Q 047927 724 EILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEG 803 (1005)
Q Consensus 724 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~~~~~~p~~~~~~l~~~~~~~~ 803 (1005)
++|++++|++++..+ +..+++|++|++++|+ +++..+
T Consensus 110 ~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~--------------------------l~~~~~--------------- 146 (308)
T 1h6u_A 110 KTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQ--------------------------ITNISP--------------- 146 (308)
T ss_dssp CEEECTTSCCCCCGG--GTTCTTCCEEECCSSC--------------------------CCCCGG---------------
T ss_pred CEEECCCCCCCCchh--hcCCCCCCEEECCCCc--------------------------cCcCcc---------------
Confidence 555555555554321 4444444444444444 433211
Q ss_pred CchhhhchhhheecccccccccccEEEEEcchHHHHHHhcccceEEECCCCeeeccCcccccCCCCCCEEECCCCcCccc
Q 047927 804 RSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGS 883 (1005)
Q Consensus 804 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ 883 (1005)
+..+++|+.|++++|++++..| ++.+++|+.|+|++|++++.
T Consensus 147 ------------------------------------l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~ 188 (308)
T 1h6u_A 147 ------------------------------------LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDI 188 (308)
T ss_dssp ------------------------------------GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC
T ss_pred ------------------------------------ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcC
Confidence 0134567777777777775433 78888888888988888864
Q ss_pred CchhhhcCCCCCEEeCCCCcCcccCcccccCCCCCCeEEccCCcccc
Q 047927 884 IPSLIGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLNLSYNHLVG 930 (1005)
Q Consensus 884 ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g 930 (1005)
.| +..+++|+.|+|++|++++..| +..+++|++|++++|++++
T Consensus 189 ~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 189 SP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp GG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred hh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence 43 7888889999999998886654 7888889999999998876
No 88
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.85 E-value=1.5e-21 Score=203.38 Aligned_cols=196 Identities=18% Similarity=0.157 Sum_probs=117.8
Q ss_pred cccEEECCCCcCCccccCccCCCCCccEEeCCCCe-ecccCcccccCCCCCCEEECCC-CcCCCCcchhhhcCCCCcEEe
Q 047927 674 QLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQ-LEGMVPKSLANCSVLEILDLGN-NQFDDTFPCWVKNASRLHVLI 751 (1005)
Q Consensus 674 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~p~~l~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~ 751 (1005)
+|++|++++|++++..+..|..+++|++|++++|+ ++++.+..|..+++|++|++++ |++++..+..|.++++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 56666666666666666666666667777777765 6655555666677777777776 666666566666666777777
Q ss_pred cCCCcCCcccCCCCCCCCCCCcc---EEEccCC-cccccCChHHHhhhhhhhhccCCchhhhchhhheeccccccccccc
Q 047927 752 LRSNNFFGNISCPRYNVSWPMLQ---IIDLASN-KFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDA 827 (1005)
Q Consensus 752 L~~N~l~~~~~~~~~~~~l~~L~---~L~ls~N-~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 827 (1005)
+++|++++ + |. +..+++|+ .|++++| .+++..+..+
T Consensus 112 l~~n~l~~-l--p~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~------------------------------------ 151 (239)
T 2xwt_C 112 IFNTGLKM-F--PD-LTKVYSTDIFFILEITDNPYMTSIPVNAF------------------------------------ 151 (239)
T ss_dssp EEEECCCS-C--CC-CTTCCBCCSEEEEEEESCTTCCEECTTTT------------------------------------
T ss_pred CCCCCCcc-c--cc-cccccccccccEEECCCCcchhhcCcccc------------------------------------
Confidence 77766655 2 33 44555555 6666666 5543222110
Q ss_pred EEEEEcchHHHHHHhcccce-EEECCCCeeeccCcccccCCCCCCEEECCCCc-CcccCchhhhcC-CCCCEEeCCCCcC
Q 047927 828 ITVTIKGLEMKLAKILNIFT-SIDFSRNNFEGPIPEEMGLLQSLCALNLSHNA-LTGSIPSLIGNL-REIESLDLSMNNL 904 (1005)
Q Consensus 828 ~~~~~~~~~~~~~~~~~~l~-~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~-l~g~ip~~~~~l-~~L~~LdLs~N~l 904 (1005)
..++.|+ .|++++|+++ .+|......++|+.|+|++|+ +++..|..++.+ ++|+.||+++|++
T Consensus 152 -------------~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l 217 (239)
T 2xwt_C 152 -------------QGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSV 217 (239)
T ss_dssp -------------TTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCC
T ss_pred -------------cchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcc
Confidence 1245556 6666666666 344332223667777777773 665555566666 6777777777777
Q ss_pred cccCcccccCCCCCCeEEccCC
Q 047927 905 SGTIPAQLASLNFLSVLNLSYN 926 (1005)
Q Consensus 905 ~~~ip~~l~~l~~L~~L~ls~N 926 (1005)
++. |.. .+++|+.|+++++
T Consensus 218 ~~l-~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 218 TAL-PSK--GLEHLKELIARNT 236 (239)
T ss_dssp CCC-CCT--TCTTCSEEECTTC
T ss_pred ccC-Chh--HhccCceeeccCc
Confidence 643 332 4556666666654
No 89
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.85 E-value=2.2e-22 Score=226.26 Aligned_cols=238 Identities=17% Similarity=0.172 Sum_probs=188.6
Q ss_pred ccCceEEEEecCCcccccCC----hhhhccCCCCeEEccCc---cccccCCchh-------hhcCcccccEEECCCCcCC
Q 047927 621 FMSLSIFFSFSKNSLTGVIP----ESICNATNLLVLDLSYN---YLSGMIPTCL-------INMSDSQLGVLNLRRNNLN 686 (1005)
Q Consensus 621 ~~~~L~~L~l~~n~l~~~~p----~~l~~l~~L~~L~Ls~N---~l~~~~p~~~-------~~l~~~~L~~L~L~~n~l~ 686 (1005)
.++.+++|++++|.+++..+ ..+..+++|++|+|++| ++++.+|..+ ..++ +|++|+|++|.++
T Consensus 30 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~--~L~~L~Ls~n~l~ 107 (386)
T 2ca6_A 30 EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCP--KLHTVRLSDNAFG 107 (386)
T ss_dssp HCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCT--TCCEEECCSCCCC
T ss_pred cCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCC--cccEEECCCCcCC
Confidence 36778888898888886533 34668899999999986 4555666655 4566 8999999999998
Q ss_pred c----cccCccCCCCCccEEeCCCCeecccCccc----ccCC---------CCCCEEECCCCcCC-CCcc---hhhhcCC
Q 047927 687 G----TVSATFPANCSLRTLDLNGNQLEGMVPKS----LANC---------SVLEILDLGNNQFD-DTFP---CWVKNAS 745 (1005)
Q Consensus 687 ~----~~~~~~~~l~~L~~L~L~~N~l~~~~p~~----l~~l---------~~L~~L~Ls~N~l~-~~~p---~~~~~l~ 745 (1005)
+ .++..+..+++|++|+|++|.+++..+.. +..+ ++|++|++++|+++ +.+| ..+..++
T Consensus 108 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~ 187 (386)
T 2ca6_A 108 PTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHR 187 (386)
T ss_dssp TTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCC
Confidence 8 46777888899999999999997554443 3344 89999999999998 4455 4677899
Q ss_pred CCcEEecCCCcCCcc--cC-CCCCCCCCCCccEEEccCCcccc----cCChHHHhhhhhhhhccCCchhhhchhhheecc
Q 047927 746 RLHVLILRSNNFFGN--IS-CPRYNVSWPMLQIIDLASNKFSG----RLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLN 818 (1005)
Q Consensus 746 ~L~~L~L~~N~l~~~--~~-~~~~~~~l~~L~~L~ls~N~~~~----~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 818 (1005)
+|++|++++|++... .. .+..+..+++|+.|++++|.++. .+|..
T Consensus 188 ~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~---------------------------- 239 (386)
T 2ca6_A 188 LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIA---------------------------- 239 (386)
T ss_dssp TCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHH----------------------------
T ss_pred CcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHH----------------------------
Confidence 999999999998721 10 14477889999999999999862 22211
Q ss_pred cccccccccEEEEEcchHHHHHHhcccceEEECCCCeeecc----Ccccc--cCCCCCCEEECCCCcCcc----cCchhh
Q 047927 819 LSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGP----IPEEM--GLLQSLCALNLSHNALTG----SIPSLI 888 (1005)
Q Consensus 819 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~----ip~~~--~~l~~L~~L~Ls~N~l~g----~ip~~~ 888 (1005)
+..++.|+.|+|++|.+++. +|..+ +.+++|+.|+|++|.+++ .+|..+
T Consensus 240 ---------------------l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l 298 (386)
T 2ca6_A 240 ---------------------LKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVI 298 (386)
T ss_dssp ---------------------GGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHH
T ss_pred ---------------------HccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHH
Confidence 12467899999999999986 67777 449999999999999998 589888
Q ss_pred -hcCCCCCEEeCCCCcCcccCc
Q 047927 889 -GNLREIESLDLSMNNLSGTIP 909 (1005)
Q Consensus 889 -~~l~~L~~LdLs~N~l~~~ip 909 (1005)
.++++|++|+|++|++++..|
T Consensus 299 ~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 299 DEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp HHHCTTCCEEECTTSBSCTTSH
T ss_pred HhcCCCceEEEccCCcCCcchh
Confidence 779999999999999998875
No 90
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.85 E-value=4.5e-21 Score=199.69 Aligned_cols=197 Identities=15% Similarity=0.169 Sum_probs=131.1
Q ss_pred CCCeEEccCccccccCCchhhhcCcccccEEECCCCc-CCccccCccCCCCCccEEeCCC-CeecccCcccccCCCCCCE
Q 047927 648 NLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNN-LNGTVSATFPANCSLRTLDLNG-NQLEGMVPKSLANCSVLEI 725 (1005)
Q Consensus 648 ~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~p~~l~~l~~L~~ 725 (1005)
+|+.|++++|++++..+..+..++ +|++|++++|+ +++..+..|..+++|++|++++ |++++..+..|..+++|++
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~--~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~ 109 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLP--NISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKF 109 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCT--TCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred cccEEEEeCCcceEECHHHccCCC--CCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence 566666666666654444555555 56666666665 5555555666666666666666 6666555566666666666
Q ss_pred EECCCCcCCCCcchhhhcCCCCc---EEecCCC-cCCcccCCCCCCCCCCCcc-EEEccCCcccccCChHHHhhhhhhhh
Q 047927 726 LDLGNNQFDDTFPCWVKNASRLH---VLILRSN-NFFGNISCPRYNVSWPMLQ-IIDLASNKFSGRLPQKWLLNLEAMMV 800 (1005)
Q Consensus 726 L~Ls~N~l~~~~p~~~~~l~~L~---~L~L~~N-~l~~~~~~~~~~~~l~~L~-~L~ls~N~~~~~~p~~~~~~l~~~~~ 800 (1005)
|++++|++++ +|. |..+++|+ +|++++| ++.+.. +..+..+++|+ .|++++|+++ .+|...+
T Consensus 110 L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~--~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~-------- 176 (239)
T 2xwt_C 110 LGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIP--VNAFQGLCNETLTLKLYNNGFT-SVQGYAF-------- 176 (239)
T ss_dssp EEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEEC--TTTTTTTBSSEEEEECCSCCCC-EECTTTT--------
T ss_pred EeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcC--cccccchhcceeEEEcCCCCCc-ccCHhhc--------
Confidence 6666666665 444 56666666 6666666 665433 34456667777 7777777766 4443221
Q ss_pred ccCCchhhhchhhheecccccccccccEEEEEcchHHHHHHhcccceEEECCCCe-eeccCcccccCC-CCCCEEECCCC
Q 047927 801 DEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNN-FEGPIPEEMGLL-QSLCALNLSHN 878 (1005)
Q Consensus 801 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~-l~g~ip~~~~~l-~~L~~L~Ls~N 878 (1005)
..+.|+.|+|++|+ +++..|..|+++ ++|+.|||++|
T Consensus 177 -----------------------------------------~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N 215 (239)
T 2xwt_C 177 -----------------------------------------NGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQT 215 (239)
T ss_dssp -----------------------------------------TTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTC
T ss_pred -----------------------------------------CCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCC
Confidence 12467889999994 887777889999 99999999999
Q ss_pred cCcccCchhhhcCCCCCEEeCCCCc
Q 047927 879 ALTGSIPSLIGNLREIESLDLSMNN 903 (1005)
Q Consensus 879 ~l~g~ip~~~~~l~~L~~LdLs~N~ 903 (1005)
++++ +|.. .+++|+.|+++++.
T Consensus 216 ~l~~-l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 216 SVTA-LPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp CCCC-CCCT--TCTTCSEEECTTC-
T ss_pred cccc-CChh--HhccCceeeccCcc
Confidence 9994 5654 68899999998763
No 91
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.84 E-value=4e-21 Score=208.56 Aligned_cols=205 Identities=20% Similarity=0.178 Sum_probs=127.0
Q ss_pred CceEEEEecCCcccccCChhh--hccCCCCeEEccCccccccCC----chhhhcCcccccEEECCCCcCCccccCccCCC
Q 047927 623 SLSIFFSFSKNSLTGVIPESI--CNATNLLVLDLSYNYLSGMIP----TCLINMSDSQLGVLNLRRNNLNGTVSATFPAN 696 (1005)
Q Consensus 623 ~~L~~L~l~~n~l~~~~p~~l--~~l~~L~~L~Ls~N~l~~~~p----~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l 696 (1005)
+.+++|++++|.+++..|..+ ..+++|++|++++|.+++..+ ..+..++ +|++|++++|++.+..+..|..+
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~--~L~~L~Ls~n~l~~~~~~~~~~l 168 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKP--GLKVLSIAQAHSPAFSCEQVRAF 168 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCS--CCCEEEEECCSSCCCCTTSCCCC
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhcc--CCCEEEeeCCCcchhhHHHhccC
Confidence 446677777777776666666 667777777777777765444 2223344 66666666666666666666666
Q ss_pred CCccEEeCCCCeeccc--C--cccccCCCCCCEEECCCCcCCCCcc--h-hhhcCCCCcEEecCCCcCCcccCCCCCCCC
Q 047927 697 CSLRTLDLNGNQLEGM--V--PKSLANCSVLEILDLGNNQFDDTFP--C-WVKNASRLHVLILRSNNFFGNISCPRYNVS 769 (1005)
Q Consensus 697 ~~L~~L~L~~N~l~~~--~--p~~l~~l~~L~~L~Ls~N~l~~~~p--~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~ 769 (1005)
++|++|+|++|++.+. + +..+..+++|++|++++|+++...+ . .++++++|++|+|++|++.+.. |..+..
T Consensus 169 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~--p~~~~~ 246 (310)
T 4glp_A 169 PALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATV--NPSAPR 246 (310)
T ss_dssp TTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCC--CSCCSS
T ss_pred CCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccc--hhhHHh
Confidence 6666666666665431 1 1223556666666666666652211 1 2345555665555555555433 222222
Q ss_pred CCCccEEEccCCcccccCChHHHhhhhhhhhccCCchhhhchhhheecccccccccccEEEEEcchHHHHHHhcccceEE
Q 047927 770 WPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSI 849 (1005)
Q Consensus 770 l~~L~~L~ls~N~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L 849 (1005)
+. .++.|+.|
T Consensus 247 ~~----------------------------------------------------------------------~~~~L~~L 256 (310)
T 4glp_A 247 CM----------------------------------------------------------------------WSSALNSL 256 (310)
T ss_dssp CC----------------------------------------------------------------------CCTTCCCE
T ss_pred cc----------------------------------------------------------------------CcCcCCEE
Confidence 10 12456677
Q ss_pred ECCCCeeeccCcccccCCCCCCEEECCCCcCcccCchhhhcCCCCCEEeCCCCcCcc
Q 047927 850 DFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSG 906 (1005)
Q Consensus 850 ~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~~ 906 (1005)
+|++|+++ .+|..+. ++|++|||++|++++. |. +..+++|+.|+|++|+++.
T Consensus 257 ~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 257 NLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp ECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred ECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 77777777 5676664 7889999999999863 44 6788899999999998874
No 92
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.84 E-value=8.8e-20 Score=191.30 Aligned_cols=161 Identities=23% Similarity=0.247 Sum_probs=142.2
Q ss_pred CceEEEEecCCcccccCChhhhccCCCCeEEccCccccccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCccEE
Q 047927 623 SLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTL 702 (1005)
Q Consensus 623 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 702 (1005)
+.++.|++++|.+++..+..+..+++|++|++++|.+++..+..+..++ +|++|++++|++++..+..|..+++|++|
T Consensus 35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~--~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 112 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLT--ELGTLGLANNQLASLPLGVFDHLTQLDKL 112 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCT--TCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCC--cCCEEECCCCcccccChhHhcccCCCCEE
Confidence 4567778888888877788888999999999999999988888888887 89999999999998888889999999999
Q ss_pred eCCCCeecccCcccccCCCCCCEEECCCCcCCCCcchhhhcCCCCcEEecCCCcCCcccCCCCCCCCCCCccEEEccCCc
Q 047927 703 DLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNK 782 (1005)
Q Consensus 703 ~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~ 782 (1005)
+|++|++++..+..|..+++|++|++++|++++..+..|+.+++|++|+|++|++++.. +..+..+++|+.|++++|+
T Consensus 113 ~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 113 YLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP--HGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC--TTTTTTCTTCCEEECCSCC
T ss_pred EcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccC--HHHHhCCCCCCEEEeeCCc
Confidence 99999999887778899999999999999999888888999999999999999998765 5678889999999999999
Q ss_pred ccccC
Q 047927 783 FSGRL 787 (1005)
Q Consensus 783 ~~~~~ 787 (1005)
+.+..
T Consensus 191 ~~c~~ 195 (251)
T 3m19_A 191 FDCSR 195 (251)
T ss_dssp BCTTS
T ss_pred eeCCc
Confidence 99873
No 93
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.83 E-value=7.8e-20 Score=197.70 Aligned_cols=147 Identities=24% Similarity=0.307 Sum_probs=119.4
Q ss_pred cCceEEEEecCCcccccCChhhhccCCCCeEEccCccccccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCccE
Q 047927 622 MSLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRT 701 (1005)
Q Consensus 622 ~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 701 (1005)
++.+++|++++|.++. +| .+..+++|+.|++++|.+++..+ +..++ +|++|++++|++++. ..+..+++|++
T Consensus 40 l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~--~L~~L~L~~n~l~~~--~~~~~l~~L~~ 111 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLT--KITELELSGNPLKNV--SAIAGLQSIKT 111 (308)
T ss_dssp HHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCC--SCCEEECCSCCCSCC--GGGTTCTTCCE
T ss_pred cCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCC--CCCEEEccCCcCCCc--hhhcCCCCCCE
Confidence 5678889999998875 34 68899999999999999986444 88887 899999999999875 36889999999
Q ss_pred EeCCCCeecccCcccccCCCCCCEEECCCCcCCCCcchhhhcCCCCcEEecCCCcCCcccCCCCCCCCCCCccEEEccCC
Q 047927 702 LDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASN 781 (1005)
Q Consensus 702 L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N 781 (1005)
|++++|++++. + .+..+++|++|++++|++++..+ ++.+++|+.|++++|++++.. . +..+++|+.|++++|
T Consensus 112 L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~---~-l~~l~~L~~L~l~~n 183 (308)
T 1h6u_A 112 LDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLT---P-LANLSKLTTLKADDN 183 (308)
T ss_dssp EECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG---G-GTTCTTCCEEECCSS
T ss_pred EECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCCh---h-hcCCCCCCEEECCCC
Confidence 99999999975 3 39999999999999999997655 888999999999999887532 1 555555555555555
Q ss_pred ccc
Q 047927 782 KFS 784 (1005)
Q Consensus 782 ~~~ 784 (1005)
+++
T Consensus 184 ~l~ 186 (308)
T 1h6u_A 184 KIS 186 (308)
T ss_dssp CCC
T ss_pred ccC
Confidence 554
No 94
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.83 E-value=1.4e-21 Score=215.56 Aligned_cols=234 Identities=19% Similarity=0.248 Sum_probs=181.4
Q ss_pred CceEEEEecCCcccccCChhhhccCCCCeEEccCcccccc-CCchhhhcCcccccEEECCCCcCCccccCccCCCCCccE
Q 047927 623 SLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGM-IPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRT 701 (1005)
Q Consensus 623 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 701 (1005)
..++.+++++|.+.+..+. +..+++|+.|++++|.+++. +|..+..++ +|++|++++|.+++..+..+..+++|++
T Consensus 70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~--~L~~L~L~~~~l~~~~~~~l~~~~~L~~ 146 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCS--KLQNLSLEGLRLSDPIVNTLAKNSNLVR 146 (336)
T ss_dssp TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBC--CCSEEECTTCBCCHHHHHHHTTCTTCSE
T ss_pred ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCC--CCCEEeCcCcccCHHHHHHHhcCCCCCE
Confidence 6778888888888877665 45688899999999988765 777788887 8999999999988888888888899999
Q ss_pred EeCCCC-eeccc-CcccccCCCCCCEEECCCC-cCCCC-cchhhhcCC-CCcEEecCCC--cCC-cccCCCCCCCCCCCc
Q 047927 702 LDLNGN-QLEGM-VPKSLANCSVLEILDLGNN-QFDDT-FPCWVKNAS-RLHVLILRSN--NFF-GNISCPRYNVSWPML 773 (1005)
Q Consensus 702 L~L~~N-~l~~~-~p~~l~~l~~L~~L~Ls~N-~l~~~-~p~~~~~l~-~L~~L~L~~N--~l~-~~~~~~~~~~~l~~L 773 (1005)
|++++| .+++. ++..+..+++|++|++++| .+++. ++..+..++ +|++|++++| .++ +.+ |..+..+++|
T Consensus 147 L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l--~~~~~~~~~L 224 (336)
T 2ast_B 147 LNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDL--STLVRRCPNL 224 (336)
T ss_dssp EECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHH--HHHHHHCTTC
T ss_pred EECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHH--HHHHhhCCCC
Confidence 999999 67753 6677888899999999999 88865 677888899 9999999999 454 233 4556678899
Q ss_pred cEEEccCCc-ccccCChHHHhhhhhhhhccCCchhhhchhhheecccccccccccEEEEEcchHHHHHHhcccceEEECC
Q 047927 774 QIIDLASNK-FSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFS 852 (1005)
Q Consensus 774 ~~L~ls~N~-~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls 852 (1005)
+.|++++|. +++..+..+ ..+++|+.|+++
T Consensus 225 ~~L~l~~~~~l~~~~~~~l-------------------------------------------------~~l~~L~~L~l~ 255 (336)
T 2ast_B 225 VHLDLSDSVMLKNDCFQEF-------------------------------------------------FQLNYLQHLSLS 255 (336)
T ss_dssp SEEECTTCTTCCGGGGGGG-------------------------------------------------GGCTTCCEEECT
T ss_pred CEEeCCCCCcCCHHHHHHH-------------------------------------------------hCCCCCCEeeCC
Confidence 999999998 655444321 135788999999
Q ss_pred CCe-eeccCcccccCCCCCCEEECCCCcCcccCchhhhcC-CCCCEEeCCCCcCcccCcccccC
Q 047927 853 RNN-FEGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGNL-REIESLDLSMNNLSGTIPAQLAS 914 (1005)
Q Consensus 853 ~N~-l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l-~~L~~LdLs~N~l~~~ip~~l~~ 914 (1005)
+|. ++......++++++|+.|+|++| ++. +.+..+ ++++.|++++|++++..|..+++
T Consensus 256 ~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~---~~~~~l~~~l~~L~l~~n~l~~~~~~~~~~ 315 (336)
T 2ast_B 256 RCYDIIPETLLELGEIPTLKTLQVFGI-VPD---GTLQLLKEALPHLQINCSHFTTIARPTIGN 315 (336)
T ss_dssp TCTTCCGGGGGGGGGCTTCCEEECTTS-SCT---TCHHHHHHHSTTSEESCCCSCCTTCSSCSS
T ss_pred CCCCCCHHHHHHHhcCCCCCEEeccCc-cCH---HHHHHHHhhCcceEEecccCccccCCcccc
Confidence 995 33222236888999999999999 443 234444 34778889999999999998775
No 95
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.82 E-value=3.1e-20 Score=215.04 Aligned_cols=188 Identities=27% Similarity=0.346 Sum_probs=94.9
Q ss_pred CCCeEEccCccccccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCccEEeCCCCeecccCcccccCCCCCCEEE
Q 047927 648 NLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILD 727 (1005)
Q Consensus 648 ~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ 727 (1005)
+|+.|++++|.+++ +|..+. + +|+.|+|++|+++. +| ..+++|++|++++|++++ +|. +.. +|+.|+
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l~--~--~L~~L~Ls~N~l~~-ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~ 126 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNLP--P--QITVLEITQNALIS-LP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLD 126 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCCC--T--TCSEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEE
T ss_pred CccEEEeCCCCCCc-cCHhHc--C--CCCEEECcCCCCcc-cc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEE
Confidence 55555555555553 443332 2 45555555555552 22 223455555555555554 333 333 555555
Q ss_pred CCCCcCCCCcchhhhcCCCCcEEecCCCcCCcccCCCCCCCCCCCccEEEccCCcccccCChHHHhhhhhhhhccCCchh
Q 047927 728 LGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQS 807 (1005)
Q Consensus 728 Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~~~~~~p~~~~~~l~~~~~~~~~~~~ 807 (1005)
+++|++++ +|. .+++|+.|+|++|++++ + |. .+++|+.|++++|++++ +|. +
T Consensus 127 Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-l--p~---~l~~L~~L~Ls~N~L~~-lp~-l---------------- 178 (571)
T 3cvr_A 127 VDNNQLTM-LPE---LPALLEYINADNNQLTM-L--PE---LPTSLEVLSVRNNQLTF-LPE-L---------------- 178 (571)
T ss_dssp CCSSCCSC-CCC---CCTTCCEEECCSSCCSC-C--CC---CCTTCCEEECCSSCCSC-CCC-C----------------
T ss_pred CCCCcCCC-CCC---cCccccEEeCCCCccCc-C--CC---cCCCcCEEECCCCCCCC-cch-h----------------
Confidence 55555554 333 34555555555555543 2 22 34455555555555544 331 1
Q ss_pred hhchhhheecccccccccccEEEEEcchHHHHHHhcccceEEECCCCeeeccCcccccCCCCC-------CEEECCCCcC
Q 047927 808 ELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSL-------CALNLSHNAL 880 (1005)
Q Consensus 808 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~~L-------~~L~Ls~N~l 880 (1005)
.++|+.|+|++|+|+ .+|. +.. +| +.|+|++|+|
T Consensus 179 -----------------------------------~~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l 219 (571)
T 3cvr_A 179 -----------------------------------PESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRI 219 (571)
T ss_dssp -----------------------------------CTTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCC
T ss_pred -----------------------------------hCCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcc
Confidence 023455555555555 4444 433 44 6666666666
Q ss_pred cccCchhhhcCCCCCEEeCCCCcCcccCcccccCCC
Q 047927 881 TGSIPSLIGNLREIESLDLSMNNLSGTIPAQLASLN 916 (1005)
Q Consensus 881 ~g~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~ 916 (1005)
+ .||..+.++++|+.|||++|.+++.+|..+..++
T Consensus 220 ~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 220 T-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQT 254 (571)
T ss_dssp C-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred e-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence 6 4566666666666666666666666666555543
No 96
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.82 E-value=7.1e-20 Score=212.05 Aligned_cols=183 Identities=27% Similarity=0.387 Sum_probs=157.7
Q ss_pred cccEEECCCCcCCccccCccCCCCCccEEeCCCCeecccCcccccCCCCCCEEECCCCcCCCCcchhhhcCCCCcEEecC
Q 047927 674 QLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILR 753 (1005)
Q Consensus 674 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~ 753 (1005)
+++.|++++|.+++ +|..+. ++|++|+|++|+++ .+| ..+++|+.|++++|++++ +|. +.+ +|++|+|+
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 79999999999998 555443 78999999999999 566 557999999999999998 666 665 99999999
Q ss_pred CCcCCcccCCCCCCCCCCCccEEEccCCcccccCChHHHhhhhhhhhccCCchhhhchhhheecccccccccccEEEEEc
Q 047927 754 SNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIK 833 (1005)
Q Consensus 754 ~N~l~~~~~~~~~~~~l~~L~~L~ls~N~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 833 (1005)
+|++++ + |. .+++|+.|++++|++++ +|.
T Consensus 129 ~N~l~~-l--p~---~l~~L~~L~Ls~N~l~~-lp~-------------------------------------------- 157 (571)
T 3cvr_A 129 NNQLTM-L--PE---LPALLEYINADNNQLTM-LPE-------------------------------------------- 157 (571)
T ss_dssp SSCCSC-C--CC---CCTTCCEEECCSSCCSC-CCC--------------------------------------------
T ss_pred CCcCCC-C--CC---cCccccEEeCCCCccCc-CCC--------------------------------------------
Confidence 999987 4 55 68999999999999986 552
Q ss_pred chHHHHHHhcccceEEECCCCeeeccCcccccCCCCCCEEECCCCcCcccCchhhhcCCCC-------CEEeCCCCcCcc
Q 047927 834 GLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREI-------ESLDLSMNNLSG 906 (1005)
Q Consensus 834 ~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L-------~~LdLs~N~l~~ 906 (1005)
.+++|+.|+|++|++++ +|. |. ++|+.|+|++|+|+ .+|. +.. +| +.|+|++|+|+
T Consensus 158 --------~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~- 220 (571)
T 3cvr_A 158 --------LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT- 220 (571)
T ss_dssp --------CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-
T ss_pred --------cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-
Confidence 14678999999999997 887 76 99999999999999 7888 665 77 99999999999
Q ss_pred cCcccccCCCCCCeEEccCCcccccCCCC
Q 047927 907 TIPAQLASLNFLSVLNLSYNHLVGRIPTS 935 (1005)
Q Consensus 907 ~ip~~l~~l~~L~~L~ls~N~l~g~ip~~ 935 (1005)
.+|..+..+++|++|||++|+|+|.+|..
T Consensus 221 ~lp~~l~~l~~L~~L~L~~N~l~~~~p~~ 249 (571)
T 3cvr_A 221 HIPENILSLDPTCTIILEDNPLSSRIRES 249 (571)
T ss_dssp CCCGGGGGSCTTEEEECCSSSCCHHHHHH
T ss_pred ecCHHHhcCCCCCEEEeeCCcCCCcCHHH
Confidence 58998989999999999999999998853
No 97
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.81 E-value=1e-19 Score=184.97 Aligned_cols=135 Identities=24% Similarity=0.199 Sum_probs=75.7
Q ss_pred CCCCeEEccCccccccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCccEEeCCCCeecccCcccccCCCCCCEE
Q 047927 647 TNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEIL 726 (1005)
Q Consensus 647 ~~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L 726 (1005)
++|++|++++|++++..+..+..++ +|++|++++|++++..+..|..+++|++|++++|++++..+..|..+++|++|
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~--~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 105 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELT--SLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKEL 105 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCT--TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCcEEEcCCCccCcCChhhhcccc--cCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEE
Confidence 3566666666666544444455555 56666666666665555555566666666666666665555555666666666
Q ss_pred ECCCCcCCCCcchhhhcCCCCcEEecCCCcCCcccCCCCCCCCCCCccEEEccCCcccc
Q 047927 727 DLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSG 785 (1005)
Q Consensus 727 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~~~~ 785 (1005)
++++|++++..+..|..+++|++|++++|++++.. +..+..+++|+.|++++|++.+
T Consensus 106 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~--~~~~~~l~~L~~L~l~~N~~~~ 162 (208)
T 2o6s_A 106 ALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVP--DGVFDRLTSLQYIWLHDNPWDC 162 (208)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC--TTTTTTCTTCCEEECCSCCBCC
T ss_pred EcCCCcCcccCHhHhccCCcCCEEECCCCccceeC--HHHhccCCCccEEEecCCCeec
Confidence 66666666555555555666666666666555432 2234444455555544444443
No 98
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.81 E-value=2.7e-19 Score=197.60 Aligned_cols=239 Identities=18% Similarity=0.202 Sum_probs=135.1
Q ss_pred EEecCCcccccCChhhhccCCCCeEEccCccccccCCchhhhcCcccccEEECCCCcCCcccc-CccCCCCCccE-EeCC
Q 047927 628 FSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVS-ATFPANCSLRT-LDLN 705 (1005)
Q Consensus 628 L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~-L~L~ 705 (1005)
++.++++++ .+|..+ .+++++|+|++|+|+...+..|.+++ +|++|+|++|++.+.++ .+|.+++++++ +.++
T Consensus 14 v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~--~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 14 FLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFG--DLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp EEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCT--TCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred EEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCC--CCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 444455554 334433 24566666666666643344556655 66666666666554433 35566665543 4455
Q ss_pred CCeecccCcccccCCCCCCEEECCCCcCCCCcchhhhcCCCCcEEecCCC-cCCcccCCCCCCCCC-CCccEEEccCCcc
Q 047927 706 GNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSN-NFFGNISCPRYNVSW-PMLQIIDLASNKF 783 (1005)
Q Consensus 706 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l-~~L~~L~ls~N~~ 783 (1005)
+|+++++.|+.|..+++|++|++++|+++...+..+....++..|++.++ ++.. +. +..+..+ ..++.|++++|++
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~-l~-~~~f~~~~~~l~~L~L~~N~i 166 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHT-IE-RNSFVGLSFESVILWLNKNGI 166 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCE-EC-TTSSTTSBSSCEEEECCSSCC
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhcccccccc-cc-ccchhhcchhhhhhccccccc
Confidence 56666666666666666666666666666655555555566666666543 3332 21 2223333 3466677777776
Q ss_pred cccCChHHHhhhhhhhhccCCchhhhchhhheecccccccccccEEEEEcchHHHHHHhcccceEEECCCCeeeccCc-c
Q 047927 784 SGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIP-E 862 (1005)
Q Consensus 784 ~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip-~ 862 (1005)
+. +|...+ ..+.++.+++++|+..+.|| +
T Consensus 167 ~~-i~~~~f-------------------------------------------------~~~~L~~l~l~~~n~l~~i~~~ 196 (350)
T 4ay9_X 167 QE-IHNSAF-------------------------------------------------NGTQLDELNLSDNNNLEELPND 196 (350)
T ss_dssp CE-ECTTSS-------------------------------------------------TTEEEEEEECTTCTTCCCCCTT
T ss_pred cC-CChhhc-------------------------------------------------cccchhHHhhccCCcccCCCHH
Confidence 53 222111 12456677776533333454 4
Q ss_pred cccCCCCCCEEECCCCcCcccCchhhhcCCCCCEEeCCCCcCcccCcccccCCCCCCeEEccCCc
Q 047927 863 EMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLNLSYNH 927 (1005)
Q Consensus 863 ~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~ 927 (1005)
.|+++++|++||||+|+|+. +|.. .+.+|+.|.+.++.--..+|. +.++++|+.++++++.
T Consensus 197 ~f~~l~~L~~LdLs~N~l~~-lp~~--~~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~~~~ 257 (350)
T 4ay9_X 197 VFHGASGPVILDISRTRIHS-LPSY--GLENLKKLRARSTYNLKKLPT-LEKLVALMEASLTYPS 257 (350)
T ss_dssp TTTTEECCSEEECTTSCCCC-CCSS--SCTTCCEEECTTCTTCCCCCC-TTTCCSCCEEECSCHH
T ss_pred HhccCcccchhhcCCCCcCc-cChh--hhccchHhhhccCCCcCcCCC-chhCcChhhCcCCCCc
Confidence 56778888888888888874 4442 245555555554443345663 7777778888877654
No 99
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.80 E-value=1.8e-19 Score=183.01 Aligned_cols=181 Identities=20% Similarity=0.199 Sum_probs=122.4
Q ss_pred CeEEccCccccccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCccEEeCCCCeecccCcccccCCCCCCEEECC
Q 047927 650 LVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLG 729 (1005)
Q Consensus 650 ~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls 729 (1005)
+.++.+++.++ .+|..+. + +|++|++++|++++..+..|..+++|++|++++|++++..+..|..+++|++|+++
T Consensus 10 ~~v~c~~~~l~-~~p~~~~--~--~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls 84 (208)
T 2o6s_A 10 TTVECYSQGRT-SVPTGIP--A--QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLS 84 (208)
T ss_dssp TEEECCSSCCS-SCCSCCC--T--TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CEEEecCCCcc-CCCCCCC--C--CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECC
Confidence 45666666665 3444332 2 67777777777776666667777777777777777776666666777777777777
Q ss_pred CCcCCCCcchhhhcCCCCcEEecCCCcCCcccCCCCCCCCCCCccEEEccCCcccccCChHHHhhhhhhhhccCCchhhh
Q 047927 730 NNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSEL 809 (1005)
Q Consensus 730 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~~~~~~p~~~~~~l~~~~~~~~~~~~~~ 809 (1005)
+|++++..+..|..+++|++|++++|++++.. +..+..
T Consensus 85 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~---------------------------------------- 122 (208)
T 2o6s_A 85 TNQLQSLPNGVFDKLTQLKELALNTNQLQSLP--DGVFDK---------------------------------------- 122 (208)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC--TTTTTT----------------------------------------
T ss_pred CCcCCccCHhHhcCccCCCEEEcCCCcCcccC--HhHhcc----------------------------------------
Confidence 77777666666666666666666666665432 222233
Q ss_pred chhhheecccccccccccEEEEEcchHHHHHHhcccceEEECCCCeeeccCcccccCCCCCCEEECCCCcCcccCchhhh
Q 047927 810 KHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSLIG 889 (1005)
Q Consensus 810 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~ 889 (1005)
+++|+.|+|++|++++..+..++.+++|++|+|++|.+.+.
T Consensus 123 ---------------------------------l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~------ 163 (208)
T 2o6s_A 123 ---------------------------------LTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT------ 163 (208)
T ss_dssp ---------------------------------CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCC------
T ss_pred ---------------------------------CCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecC------
Confidence 34556666666666655555677788888888888877753
Q ss_pred cCCCCCEEeCCCCcCcccCcccccCCCC
Q 047927 890 NLREIESLDLSMNNLSGTIPAQLASLNF 917 (1005)
Q Consensus 890 ~l~~L~~LdLs~N~l~~~ip~~l~~l~~ 917 (1005)
+++|+.|+++.|+++|.+|+.++.++.
T Consensus 164 -~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 164 -CPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp -TTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred -CCCHHHHHHHHHhCCceeeccCccccC
Confidence 456788888888888888888877654
No 100
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.79 E-value=3.5e-19 Score=182.03 Aligned_cols=89 Identities=25% Similarity=0.203 Sum_probs=72.3
Q ss_pred ceEEECCCCeeeccCcccccCCCCCCEEECCCCcCcccCchhhhcCCCCCEEeCCCCcCcccCcccccCCCCCCeEEccC
Q 047927 846 FTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLNLSY 925 (1005)
Q Consensus 846 l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~ 925 (1005)
|+.|+|++|++++..|..|+.+++|++|+|++|++++..|..+..+++|+.|||++|++++..|..|..+++|++|++++
T Consensus 83 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 162 (220)
T 2v70_A 83 VNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLA 162 (220)
T ss_dssp CCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecC
Confidence 34444444444445566677888899999999999988888899999999999999999988899999999999999999
Q ss_pred CcccccCCC
Q 047927 926 NHLVGRIPT 934 (1005)
Q Consensus 926 N~l~g~ip~ 934 (1005)
|+++|.++.
T Consensus 163 N~l~c~c~l 171 (220)
T 2v70_A 163 NPFNCNCYL 171 (220)
T ss_dssp CCEECSGGG
T ss_pred cCCcCCCch
Confidence 999987763
No 101
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.78 E-value=1.2e-18 Score=192.44 Aligned_cols=225 Identities=16% Similarity=0.126 Sum_probs=176.9
Q ss_pred CceEEEEecCCcccccCChhhhccCCCCeEEccCccccccCCc-hhhhcCccccc-EEECCCCcCCccccCccCCCCCcc
Q 047927 623 SLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPT-CLINMSDSQLG-VLNLRRNNLNGTVSATFPANCSLR 700 (1005)
Q Consensus 623 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~~~L~-~L~L~~n~l~~~~~~~~~~l~~L~ 700 (1005)
+++++|++++|+++...+..|.++++|++|+|++|++.+.+|. .|.+++ ++. .+.+++|+++.+.|..|..+++|+
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~--~l~~~l~~~~N~l~~l~~~~f~~l~~L~ 107 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLP--KLHEIRIEKANNLLYINPEAFQNLPNLQ 107 (350)
T ss_dssp TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCT--TCCEEEEEEETTCCEECTTSBCCCTTCC
T ss_pred CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcch--hhhhhhcccCCcccccCchhhhhccccc
Confidence 5677888888888876667899999999999999998766654 566776 555 467778999999999999999999
Q ss_pred EEeCCCCeecccCcccccCCCCCCEEECCC-CcCCCCcchhhhcCC-CCcEEecCCCcCCcccCCCCCCCCCCCccEEEc
Q 047927 701 TLDLNGNQLEGMVPKSLANCSVLEILDLGN-NQFDDTFPCWVKNAS-RLHVLILRSNNFFGNISCPRYNVSWPMLQIIDL 778 (1005)
Q Consensus 701 ~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l 778 (1005)
+|++++|++++..+..+....++..|++.+ |++....+..|..+. .++.|+|++|+++. + |.......+|+.+++
T Consensus 108 ~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~-i--~~~~f~~~~L~~l~l 184 (350)
T 4ay9_X 108 YLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE-I--HNSAFNGTQLDELNL 184 (350)
T ss_dssp EEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE-E--CTTSSTTEEEEEEEC
T ss_pred cccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC-C--ChhhccccchhHHhh
Confidence 999999999988777788888899999966 577766667777775 68899999999975 3 666667789999999
Q ss_pred cCCcccccCChHHHhhhhhhhhccCCchhhhchhhheecccccccccccEEEEEcchHHHHHHhcccceEEECCCCeeec
Q 047927 779 ASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEG 858 (1005)
Q Consensus 779 s~N~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g 858 (1005)
++|+..+.+|...+ ..+++|+.||||+|+|+.
T Consensus 185 ~~~n~l~~i~~~~f------------------------------------------------~~l~~L~~LdLs~N~l~~ 216 (350)
T 4ay9_X 185 SDNNNLEELPNDVF------------------------------------------------HGASGPVILDISRTRIHS 216 (350)
T ss_dssp TTCTTCCCCCTTTT------------------------------------------------TTEECCSEEECTTSCCCC
T ss_pred ccCCcccCCCHHHh------------------------------------------------ccCcccchhhcCCCCcCc
Confidence 87666667775432 146789999999999995
Q ss_pred cCcccccCCCCCCEEECCCCcCcccCchhhhcCCCCCEEeCCCCcC
Q 047927 859 PIPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNL 904 (1005)
Q Consensus 859 ~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l 904 (1005)
..+.. +.+|+.|.+.++.--..+|. +.++++|+.++++++.-
T Consensus 217 lp~~~---~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~~~~~ 258 (350)
T 4ay9_X 217 LPSYG---LENLKKLRARSTYNLKKLPT-LEKLVALMEASLTYPSH 258 (350)
T ss_dssp CCSSS---CTTCCEEECTTCTTCCCCCC-TTTCCSCCEEECSCHHH
T ss_pred cChhh---hccchHhhhccCCCcCcCCC-chhCcChhhCcCCCCcc
Confidence 44433 55666666655544447785 88999999999987654
No 102
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.76 E-value=1.9e-18 Score=191.49 Aligned_cols=105 Identities=25% Similarity=0.293 Sum_probs=71.3
Q ss_pred CeEEccCccccccCCchhhhcCcccccEEECCCCcCCccccCccC-CCCCccEEeCCCCeecccCcccccCCCCCCEEEC
Q 047927 650 LVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFP-ANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDL 728 (1005)
Q Consensus 650 ~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L 728 (1005)
+.++++++.++ .+|..+.. .++.|+|++|++++..+..|. .+++|++|+|++|++++..+..|..+++|++|+|
T Consensus 21 ~~l~c~~~~l~-~iP~~~~~----~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L 95 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLPS----YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDL 95 (361)
T ss_dssp TEEECCSSCCS-SCCSSCCT----TCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CEEEeCCCCcC-ccCccCCC----CCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEEC
Confidence 46777777776 45654432 567777777777777666666 7777777777777777766667777777777777
Q ss_pred CCCcCCCCcchhhhcCCCCcEEecCCCcCCc
Q 047927 729 GNNQFDDTFPCWVKNASRLHVLILRSNNFFG 759 (1005)
Q Consensus 729 s~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 759 (1005)
++|++++..+..|..+++|++|+|++|++.+
T Consensus 96 s~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~ 126 (361)
T 2xot_A 96 SSNHLHTLDEFLFSDLQALEVLLLYNNHIVV 126 (361)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred CCCcCCcCCHHHhCCCcCCCEEECCCCcccE
Confidence 7777776666666666666666666665543
No 103
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.76 E-value=2.4e-18 Score=175.81 Aligned_cols=72 Identities=19% Similarity=0.182 Sum_probs=57.0
Q ss_pred ccccCCCCCCEEECCCCcCcccCchhhhcCCCCCEEeCCCCcCcccCcccccCCCCCCeEEccCCcccccCC
Q 047927 862 EEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLNLSYNHLVGRIP 933 (1005)
Q Consensus 862 ~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip 933 (1005)
..|+++++|++|+|++|++++..|..|..+++|+.|||++|+|++..|..|..+++|++|++++|++.|..+
T Consensus 98 ~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 169 (220)
T 2v9t_B 98 SLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCH 169 (220)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred hHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCc
Confidence 345667778888888888887777778888888888888888887777778888888888888888887543
No 104
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.76 E-value=3.3e-18 Score=183.08 Aligned_cols=187 Identities=24% Similarity=0.296 Sum_probs=115.2
Q ss_pred eEEccCccccccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCccEEeCCCCeecccCcccccCCCCCCEEECCC
Q 047927 651 VLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGN 730 (1005)
Q Consensus 651 ~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~ 730 (1005)
.+.+..+.+++..+ +..++ +|+.|++++|.+... ..+..+++|++|++++|++++..+ +..+++|++|++++
T Consensus 28 ~~~l~~~~~~~~~~--~~~l~--~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~ 99 (291)
T 1h6t_A 28 KDNLKKKSVTDAVT--QNELN--SIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDE 99 (291)
T ss_dssp HHHTTCSCTTSEEC--HHHHH--TCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCS
T ss_pred HHHhcCCCcccccc--hhhcC--cccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCC
Confidence 34455555543322 23343 566666666666544 235555666666666666664433 55666666666666
Q ss_pred CcCCCCcchhhhcCCCCcEEecCCCcCCcccCCCCCCCCCCCccEEEccCCcccccCChHHHhhhhhhhhccCCchhhhc
Q 047927 731 NQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELK 810 (1005)
Q Consensus 731 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~~~~~~p~~~~~~l~~~~~~~~~~~~~~~ 810 (1005)
|++++. | .+..+++|++|++++|++.+. ..+.
T Consensus 100 n~l~~~-~-~l~~l~~L~~L~L~~n~i~~~----~~l~------------------------------------------ 131 (291)
T 1h6t_A 100 NKVKDL-S-SLKDLKKLKSLSLEHNGISDI----NGLV------------------------------------------ 131 (291)
T ss_dssp SCCCCG-G-GGTTCTTCCEEECTTSCCCCC----GGGG------------------------------------------
T ss_pred CcCCCC-h-hhccCCCCCEEECCCCcCCCC----hhhc------------------------------------------
Confidence 665542 2 245555555555555544321 1122
Q ss_pred hhhheecccccccccccEEEEEcchHHHHHHhcccceEEECCCCeeeccCcccccCCCCCCEEECCCCcCcccCchhhhc
Q 047927 811 HLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGN 890 (1005)
Q Consensus 811 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~ 890 (1005)
.+++|+.|++++|++++. +.++.+++|+.|+|++|++++..| ++.
T Consensus 132 -------------------------------~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~ 176 (291)
T 1h6t_A 132 -------------------------------HLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAG 176 (291)
T ss_dssp -------------------------------GCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTT
T ss_pred -------------------------------CCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcC
Confidence 345667777777777654 467778888888888888886544 778
Q ss_pred CCCCCEEeCCCCcCcccCcccccCCCCCCeEEccCCcccc
Q 047927 891 LREIESLDLSMNNLSGTIPAQLASLNFLSVLNLSYNHLVG 930 (1005)
Q Consensus 891 l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g 930 (1005)
+++|+.|+|++|++++ +| .+..+++|+.|++++|+++.
T Consensus 177 l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 177 LTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred CCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccC
Confidence 8888888888888875 34 37888888888888888776
No 105
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.76 E-value=1e-17 Score=171.19 Aligned_cols=162 Identities=21% Similarity=0.225 Sum_probs=132.8
Q ss_pred EEEecCCcccccCChhhhccCCCCeEEccCccccccCC-chhhhcCcccccEEECCCCcCCccccCccCCCCCccEEeCC
Q 047927 627 FFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIP-TCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLN 705 (1005)
Q Consensus 627 ~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 705 (1005)
.+++++|.++. +|..+ ...++.|++++|++++..| ..+..++ +|++|++++|++++..+..|..+++|++|+|+
T Consensus 15 ~l~~s~n~l~~-iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~--~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 15 TVDCSNQKLNK-IPEHI--PQYTAELRLNNNEFTVLEATGIFKKLP--QLRKINFSNNKITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp EEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCEECCCCCGGGCT--TCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred EeEeCCCCccc-CccCC--CCCCCEEEcCCCcCCccCchhhhccCC--CCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence 56667776664 45444 3456788888888887644 4467777 88888888888888888888888999999999
Q ss_pred CCeecccCcccccCCCCCCEEECCCCcCCCCcchhhhcCCCCcEEecCCCcCCcccCCCCCCCCCCCccEEEccCCcccc
Q 047927 706 GNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSG 785 (1005)
Q Consensus 706 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~~~~ 785 (1005)
+|++++..+..|..+++|++|+|++|++++..|..|..+++|++|+|++|++++.. |..+..+++|+.|++++|++.+
T Consensus 90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 90 SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVA--PGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp SSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBC--TTTTTTCTTCCEEECCSCCEEC
T ss_pred CCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEEC--HHHhcCCCCCCEEEecCcCCcC
Confidence 99998888888889999999999999999888888999999999999999988766 7788889999999999999999
Q ss_pred cCChHHHhhh
Q 047927 786 RLPQKWLLNL 795 (1005)
Q Consensus 786 ~~p~~~~~~l 795 (1005)
.++..|+..+
T Consensus 168 ~c~l~~l~~~ 177 (220)
T 2v70_A 168 NCYLAWLGEW 177 (220)
T ss_dssp SGGGHHHHHH
T ss_pred CCchHHHHHH
Confidence 8887776543
No 106
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.75 E-value=1.3e-17 Score=170.44 Aligned_cols=162 Identities=20% Similarity=0.248 Sum_probs=128.5
Q ss_pred EEEecCCcccccCChhhhccCCCCeEEccCccccccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCccEEeCCC
Q 047927 627 FFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNG 706 (1005)
Q Consensus 627 ~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 706 (1005)
.++++++.++ .+|..+. ++|+.|++++|++++..+..+..++ +|++|+|++|++++..|..|.++++|++|+|++
T Consensus 15 ~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~--~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 15 IVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYK--KLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89 (220)
T ss_dssp EEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCT--TCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred EEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCC--CCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence 4555666655 3444432 5788888888888876666777777 788888888888888888888888888888888
Q ss_pred CeecccCcccccCCCCCCEEECCCCcCCCCcchhhhcCCCCcEEecCCCcCCcccCCCCCCCCCCCccEEEccCCccccc
Q 047927 707 NQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGR 786 (1005)
Q Consensus 707 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~~~~~ 786 (1005)
|++++..+..|..+++|++|+|++|++++..|..|..+++|++|+|++|++++.. +..+..+++|+.|++++|++.+.
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~L~~N~~~c~ 167 (220)
T 2v9t_B 90 NKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIA--KGTFSPLRAIQTMHLAQNPFICD 167 (220)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC--TTTTTTCTTCCEEECCSSCEECS
T ss_pred CcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEEC--HHHHhCCCCCCEEEeCCCCcCCC
Confidence 8888776677888888888888888888888888888888888888888888754 55677888999999999999888
Q ss_pred CChHHHhhh
Q 047927 787 LPQKWLLNL 795 (1005)
Q Consensus 787 ~p~~~~~~l 795 (1005)
.+..|+..+
T Consensus 168 c~l~~l~~~ 176 (220)
T 2v9t_B 168 CHLKWLADY 176 (220)
T ss_dssp GGGHHHHHH
T ss_pred CccHHHHHH
Confidence 777776543
No 107
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.74 E-value=2.3e-17 Score=169.85 Aligned_cols=90 Identities=22% Similarity=0.185 Sum_probs=76.8
Q ss_pred ccceEEECCCCeeeccCcccccCCCCCCEEECCCCcCcccCchhhhcCCCCCEEeCCCCcCcccCcccccCCCCCCeEEc
Q 047927 844 NIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLNL 923 (1005)
Q Consensus 844 ~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~l 923 (1005)
++|+.|+|++|++++..|..|+.+++|++|+|++|+|+ .+|..++.+++|+.|+|++|+|++..+..+..+++|+.|++
T Consensus 88 ~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 166 (229)
T 3e6j_A 88 TQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYL 166 (229)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEe
Confidence 44555566666666555666788999999999999999 78999999999999999999999888888999999999999
Q ss_pred cCCcccccCCC
Q 047927 924 SYNHLVGRIPT 934 (1005)
Q Consensus 924 s~N~l~g~ip~ 934 (1005)
++|+++|.++.
T Consensus 167 ~~N~~~c~c~~ 177 (229)
T 3e6j_A 167 FGNPWDCECRD 177 (229)
T ss_dssp TTSCBCTTBGG
T ss_pred eCCCccCCcch
Confidence 99999998764
No 108
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.74 E-value=6.8e-18 Score=198.00 Aligned_cols=191 Identities=20% Similarity=0.274 Sum_probs=121.5
Q ss_pred CCCeEEccCccccccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCccEEeCCCCeecccCcccccCCCCCCEEE
Q 047927 648 NLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILD 727 (1005)
Q Consensus 648 ~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ 727 (1005)
.+..+.+..+.+.+..+ +..+. +|+.|++++|.+.... .+..+++|+.|+|++|++++..| +..+++|+.|+
T Consensus 22 ~l~~l~l~~~~i~~~~~--~~~L~--~L~~L~l~~n~i~~l~--~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~ 93 (605)
T 1m9s_A 22 ETIKDNLKKKSVTDAVT--QNELN--SIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLF 93 (605)
T ss_dssp HHHHHHTTCSCTTSEEC--HHHHT--TCCCCBCTTCCCCCCT--TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEE
T ss_pred HHHHHhccCCCcccccc--hhcCC--CCCEEECcCCCCCCCh--HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEE
Confidence 35556667776665433 44555 7778888888776542 46777777777777777776544 77777777777
Q ss_pred CCCCcCCCCcchhhhcCCCCcEEecCCCcCCcccCCCCCCCCCCCccEEEccCCcccccCChHHHhhhhhhhhccCCchh
Q 047927 728 LGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQS 807 (1005)
Q Consensus 728 Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~~~~~~p~~~~~~l~~~~~~~~~~~~ 807 (1005)
|++|++++. ..+..+++|+.|+|++|++.+ ...+..+++|+.|+|++|++++. +.
T Consensus 94 Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~----l~~l~~l~~L~~L~Ls~N~l~~l-~~------------------ 148 (605)
T 1m9s_A 94 LDENKIKDL--SSLKDLKKLKSLSLEHNGISD----INGLVHLPQLESLYLGNNKITDI-TV------------------ 148 (605)
T ss_dssp CCSSCCCCC--TTSTTCTTCCEEECTTSCCCC----CGGGGGCTTCSEEECCSSCCCCC-GG------------------
T ss_pred CcCCCCCCC--hhhccCCCCCEEEecCCCCCC----CccccCCCccCEEECCCCccCCc-hh------------------
Confidence 777777752 256777777777777777764 23455666666666666666542 10
Q ss_pred hhchhhheecccccccccccEEEEEcchHHHHHHhcccceEEECCCCeeeccCcccccCCCCCCEEECCCCcCcccCchh
Q 047927 808 ELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSL 887 (1005)
Q Consensus 808 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~ 887 (1005)
+..+++|+.|+|++|++++.+| +..+++|+.|+|++|+|++ +| .
T Consensus 149 --------------------------------l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~-l~-~ 192 (605)
T 1m9s_A 149 --------------------------------LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-A 192 (605)
T ss_dssp --------------------------------GGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-G
T ss_pred --------------------------------hcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCC-Ch-H
Confidence 0124556666666666665544 6666666666666666664 23 3
Q ss_pred hhcCCCCCEEeCCCCcCccc
Q 047927 888 IGNLREIESLDLSMNNLSGT 907 (1005)
Q Consensus 888 ~~~l~~L~~LdLs~N~l~~~ 907 (1005)
+..+++|+.|+|++|++++.
T Consensus 193 l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 193 LAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp GTTCTTCSEEECCSEEEECC
T ss_pred HccCCCCCEEEccCCcCcCC
Confidence 56666666666666666654
No 109
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.74 E-value=1.2e-17 Score=178.77 Aligned_cols=190 Identities=18% Similarity=0.213 Sum_probs=151.3
Q ss_pred EEEecCCcccccCChhhhccCCCCeEEccCccccccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCccEEeCCC
Q 047927 627 FFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNG 706 (1005)
Q Consensus 627 ~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 706 (1005)
.+.+..+.+++.. .+..+++|+.|++++|.+... + .+..++ +|++|++++|++++..+ +..+++|++|++++
T Consensus 28 ~~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~~-~-~~~~l~--~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~ 99 (291)
T 1h6t_A 28 KDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV-Q-GIQYLP--NVTKLFLNGNKLTDIKP--LANLKNLGWLFLDE 99 (291)
T ss_dssp HHHTTCSCTTSEE--CHHHHHTCCEEECTTSCCCCC-T-TGGGCT--TCCEEECCSSCCCCCGG--GTTCTTCCEEECCS
T ss_pred HHHhcCCCccccc--chhhcCcccEEEccCCCcccC-h-hHhcCC--CCCEEEccCCccCCCcc--cccCCCCCEEECCC
Confidence 3445566665543 356789999999999999854 4 477777 99999999999998776 89999999999999
Q ss_pred CeecccCcccccCCCCCCEEECCCCcCCCCcchhhhcCCCCcEEecCCCcCCcccCCCCCCCCCCCccEEEccCCccccc
Q 047927 707 NQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGR 786 (1005)
Q Consensus 707 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~~~~~ 786 (1005)
|++++. ..+..+++|++|++++|++++. ..+..+++|+.|++++|++++. ..+.
T Consensus 100 n~l~~~--~~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~----~~l~------------------ 153 (291)
T 1h6t_A 100 NKVKDL--SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI----TVLS------------------ 153 (291)
T ss_dssp SCCCCG--GGGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC----GGGG------------------
T ss_pred CcCCCC--hhhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc----hhhc------------------
Confidence 999963 3499999999999999999975 5688999999999999988642 1222
Q ss_pred CChHHHhhhhhhhhccCCchhhhchhhheecccccccccccEEEEEcchHHHHHHhcccceEEECCCCeeeccCcccccC
Q 047927 787 LPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGL 866 (1005)
Q Consensus 787 ~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~ 866 (1005)
.+++|+.|++++|++++..| ++.
T Consensus 154 -------------------------------------------------------~l~~L~~L~L~~N~l~~~~~--l~~ 176 (291)
T 1h6t_A 154 -------------------------------------------------------RLTKLDTLSLEDNQISDIVP--LAG 176 (291)
T ss_dssp -------------------------------------------------------GCTTCSEEECCSSCCCCCGG--GTT
T ss_pred -------------------------------------------------------cCCCCCEEEccCCccccchh--hcC
Confidence 24556677777777776544 788
Q ss_pred CCCCCEEECCCCcCcccCchhhhcCCCCCEEeCCCCcCcccCc
Q 047927 867 LQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIP 909 (1005)
Q Consensus 867 l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~~~ip 909 (1005)
+++|+.|+|++|++++ +|. +..+++|+.|++++|+++....
T Consensus 177 l~~L~~L~L~~N~i~~-l~~-l~~l~~L~~L~l~~n~i~~~~~ 217 (291)
T 1h6t_A 177 LTKLQNLYLSKNHISD-LRA-LAGLKNLDVLELFSQECLNKPI 217 (291)
T ss_dssp CTTCCEEECCSSCCCB-CGG-GTTCTTCSEEEEEEEEEECCCE
T ss_pred CCccCEEECCCCcCCC-Chh-hccCCCCCEEECcCCcccCCcc
Confidence 8899999999999985 554 8889999999999999886433
No 110
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.73 E-value=2.6e-17 Score=193.06 Aligned_cols=207 Identities=18% Similarity=0.188 Sum_probs=111.4
Q ss_pred hccCCCCeEEccCccccccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCccEEeCCCCeecccCcccccCCCCC
Q 047927 644 CNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVL 723 (1005)
Q Consensus 644 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L 723 (1005)
..+++|+.|++++|.+.. +| .+..++ +|+.|+|++|++++..+ +..+++|+.|+|++|.+++. | .+..+++|
T Consensus 40 ~~L~~L~~L~l~~n~i~~-l~-~l~~l~--~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l-~-~l~~l~~L 111 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKS-VQ-GIQYLP--NVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDL-S-SLKDLKKL 111 (605)
T ss_dssp HHHTTCCCCBCTTCCCCC-CT-TGGGCT--TCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCC-T-TSTTCTTC
T ss_pred hcCCCCCEEECcCCCCCC-Ch-HHccCC--CCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCC-h-hhccCCCC
Confidence 445555555555555542 22 344554 55556666555555444 55555566666666655532 2 45555666
Q ss_pred CEEECCCCcCCCCcchhhhcCCCCcEEecCCCcCCcccCCCCCCCCCCCccEEEccCCcccccCChHHHhhhhhhhhccC
Q 047927 724 EILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEG 803 (1005)
Q Consensus 724 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~~~~~~p~~~~~~l~~~~~~~~ 803 (1005)
+.|+|++|++++. ..+..+++|+.|+|++|++++. ..+..+++|+.|+|++|.+.+..| +
T Consensus 112 ~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l----~~l~~l~~L~~L~Ls~N~l~~~~~---l----------- 171 (605)
T 1m9s_A 112 KSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI----TVLSRLTKLDTLSLEDNQISDIVP---L----------- 171 (605)
T ss_dssp CEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC----GGGGSCTTCSEEECCSSCCCCCGG---G-----------
T ss_pred CEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc----hhhcccCCCCEEECcCCcCCCchh---h-----------
Confidence 6666666665542 2355556666666666655542 344555666666666666554433 0
Q ss_pred CchhhhchhhheecccccccccccEEEEEcchHHHHHHhcccceEEECCCCeeeccCcccccCCCCCCEEECCCCcCccc
Q 047927 804 RSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGS 883 (1005)
Q Consensus 804 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ 883 (1005)
..++.|+.|+|++|++++. | .+..+++|+.|+|++|++++.
T Consensus 172 -------------------------------------~~l~~L~~L~Ls~N~i~~l-~-~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 172 -------------------------------------AGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp -------------------------------------TTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEECCSEEEECC
T ss_pred -------------------------------------ccCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEccCCcCcCC
Confidence 0244556666666666643 2 466666666666666666643
Q ss_pred C---------chhh----hcCCCCCEEeCCCCcCcccCcccccCCCC
Q 047927 884 I---------PSLI----GNLREIESLDLSMNNLSGTIPAQLASLNF 917 (1005)
Q Consensus 884 i---------p~~~----~~l~~L~~LdLs~N~l~~~ip~~l~~l~~ 917 (1005)
. |..+ +.....+.+...++...|.+|..++.+..
T Consensus 213 p~~~~~~l~~~~~l~~l~g~~~~~~~i~~~g~~~~~~i~~~l~~~~~ 259 (605)
T 1m9s_A 213 PINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTN 259 (605)
T ss_dssp CCCCCSSCEEECCCBCSSSCBCCCSEESTTCEEETTEEECCCSSCCS
T ss_pred cccccccEEecccccccCCCCcCchhcccCCcccCCcceeccccccc
Confidence 1 1111 22233445555556666666666665544
No 111
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.72 E-value=8.2e-17 Score=165.62 Aligned_cols=155 Identities=21% Similarity=0.183 Sum_probs=128.4
Q ss_pred EEEEecCCcccccCChhhhccCCCCeEEccCccccccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCccEEeCC
Q 047927 626 IFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLN 705 (1005)
Q Consensus 626 ~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 705 (1005)
+.++.+++.++ .+|..+ .++|+.|+|++|++++..|..+..++ +|++|+|++|++....+..|..+++|++|+|+
T Consensus 22 ~~v~c~~~~l~-~ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~--~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls 96 (229)
T 3e6j_A 22 TTVDCRSKRHA-SVPAGI--PTNAQILYLHDNQITKLEPGVFDSLI--NLKELYLGSNQLGALPVGVFDSLTQLTVLDLG 96 (229)
T ss_dssp TEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCT--TCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CEeEccCCCcC-ccCCCC--CCCCCEEEcCCCccCccCHHHhhCcc--CCcEEECCCCCCCCcChhhcccCCCcCEEECC
Confidence 34666666665 444443 37888999999999888788888887 89999999999988777888889999999999
Q ss_pred CCeecccCcccccCCCCCCEEECCCCcCCCCcchhhhcCCCCcEEecCCCcCCcccCCCCCCCCCCCccEEEccCCcccc
Q 047927 706 GNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSG 785 (1005)
Q Consensus 706 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~~~~ 785 (1005)
+|++++..+..|..+++|++|++++|+++ .+|..+..+++|++|+|++|++.+.. +..+..+++|+.|++++|++.+
T Consensus 97 ~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 97 TNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIP--HGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCC--TTTTTTCTTCCEEECTTSCBCT
T ss_pred CCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccC--HHHHhCCCCCCEEEeeCCCccC
Confidence 99999877778889999999999999998 67888889999999999999988654 4567888999999999999998
Q ss_pred cCC
Q 047927 786 RLP 788 (1005)
Q Consensus 786 ~~p 788 (1005)
.++
T Consensus 174 ~c~ 176 (229)
T 3e6j_A 174 ECR 176 (229)
T ss_dssp TBG
T ss_pred Ccc
Confidence 876
No 112
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.71 E-value=1.9e-17 Score=165.17 Aligned_cols=116 Identities=22% Similarity=0.295 Sum_probs=97.4
Q ss_pred hcccceEEECCCCeeeccCcccccCCCCCCEEECCCCcCcccCchhhhcCCCCCEEeCCCCcCcccCcccccCCCCCCeE
Q 047927 842 ILNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLASLNFLSVL 921 (1005)
Q Consensus 842 ~~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L 921 (1005)
.+++|+.|+|++|++++.+|..|+++++|++|+|++|+|++..|..++++++|++|||++|++++.+|..+..+++|++|
T Consensus 52 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 131 (192)
T 1w8a_A 52 RLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSL 131 (192)
T ss_dssp GCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEE
T ss_pred cCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEE
Confidence 46778899999999999899999999999999999999999989889999999999999999999999999999999999
Q ss_pred EccCCcccccCCCCCcccccccccccCCCCCCCCCC
Q 047927 922 NLSYNHLVGRIPTSTQLQSFLATSFEGNDRLWGPPL 957 (1005)
Q Consensus 922 ~ls~N~l~g~ip~~~~~~~~~~~~~~gn~~lc~~~~ 957 (1005)
++++|+++|.+|...-...+....+.++...|+.|.
T Consensus 132 ~L~~N~l~c~c~l~~~~~~l~~~~~~~~~~~C~~P~ 167 (192)
T 1w8a_A 132 NLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPS 167 (192)
T ss_dssp ECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSST
T ss_pred EeCCCCccCcCcchHHHHHHHHcCCCCCCCCCCCCh
Confidence 999999999887432112223334556666676553
No 113
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.71 E-value=3.6e-17 Score=172.07 Aligned_cols=167 Identities=19% Similarity=0.282 Sum_probs=103.7
Q ss_pred ccEEECCCCcCCccccCccCCCCCccEEeCCCCeecccCcccccCCCCCCEEECCCCcCCCCcchhhhcCCCCcEEecCC
Q 047927 675 LGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRS 754 (1005)
Q Consensus 675 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~ 754 (1005)
+..+++++|.+++.. .+..+++|++|++++|.++. +| .+..+++|++|++++|++++..+ +..+++|++|++++
T Consensus 21 l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~ 94 (263)
T 1xeu_A 21 AVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNR 94 (263)
T ss_dssp HHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCS
T ss_pred HHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCC
Confidence 444444555544333 34445556666666666553 23 45666666666666666665444 66666666666666
Q ss_pred CcCCcccCCCCCCCCCCCccEEEccCCcccccCChHHHhhhhhhhhccCCchhhhchhhheecccccccccccEEEEEcc
Q 047927 755 NNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKG 834 (1005)
Q Consensus 755 N~l~~~~~~~~~~~~l~~L~~L~ls~N~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 834 (1005)
|++++. |.... ++
T Consensus 95 N~l~~l---~~~~~--~~-------------------------------------------------------------- 107 (263)
T 1xeu_A 95 NRLKNL---NGIPS--AC-------------------------------------------------------------- 107 (263)
T ss_dssp SCCSCC---TTCCC--SS--------------------------------------------------------------
T ss_pred CccCCc---Ccccc--Cc--------------------------------------------------------------
Confidence 665542 11111 33
Q ss_pred hHHHHHHhcccceEEECCCCeeeccCcccccCCCCCCEEECCCCcCcccCchhhhcCCCCCEEeCCCCcCcccCcccccC
Q 047927 835 LEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLAS 914 (1005)
Q Consensus 835 ~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~ 914 (1005)
|+.|+|++|++++ +| .++.+++|++|+|++|++++. | .++.+++|+.|+|++|++++. ..+..
T Consensus 108 -----------L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~ 170 (263)
T 1xeu_A 108 -----------LSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTR 170 (263)
T ss_dssp -----------CCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTT
T ss_pred -----------ccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhcc
Confidence 4445555555554 22 467777888888888888753 4 577788888888888888766 66778
Q ss_pred CCCCCeEEccCCccccc
Q 047927 915 LNFLSVLNLSYNHLVGR 931 (1005)
Q Consensus 915 l~~L~~L~ls~N~l~g~ 931 (1005)
+++|+.|++++|++++.
T Consensus 171 l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 171 LKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp CCCCCEEEEEEEEEECC
T ss_pred CCCCCEEeCCCCcccCC
Confidence 88888888888888765
No 114
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.70 E-value=6.2e-17 Score=179.36 Aligned_cols=162 Identities=22% Similarity=0.159 Sum_probs=109.7
Q ss_pred eEEEEecCCcccccCChhhh-ccCCCCeEEccCccccccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCccEEe
Q 047927 625 SIFFSFSKNSLTGVIPESIC-NATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLD 703 (1005)
Q Consensus 625 L~~L~l~~n~l~~~~p~~l~-~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 703 (1005)
++.|++++|++++..+..+. .+++|+.|+|++|++++..+..|..++ +|++|+|++|++++..+..|..+++|++|+
T Consensus 41 l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~--~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 118 (361)
T 2xot_A 41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVP--NLRYLDLSSNHLHTLDEFLFSDLQALEVLL 118 (361)
T ss_dssp CSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCT--TCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred CCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCC--CCCEEECCCCcCCcCCHHHhCCCcCCCEEE
Confidence 45566666666655555565 677777777777777766666677766 777777777777777666777777777777
Q ss_pred CCCCeecccCcccccCCCCCCEEECCCCcCCCCcchhh---hcCCCCcEEecCCCcCCcccCCCCCCCCCCC--ccEEEc
Q 047927 704 LNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWV---KNASRLHVLILRSNNFFGNISCPRYNVSWPM--LQIIDL 778 (1005)
Q Consensus 704 L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~---~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~--L~~L~l 778 (1005)
|++|++++..|..|..+++|+.|+|++|++++..+..| ..+++|+.|+|++|++++.. +..+..++. ++.|++
T Consensus 119 L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~--~~~~~~l~~~~l~~l~l 196 (361)
T 2xot_A 119 LYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLP--LTDLQKLPAWVKNGLYL 196 (361)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCC--HHHHHHSCHHHHTTEEC
T ss_pred CCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccC--HHHhhhccHhhcceEEe
Confidence 77777777767777777777777777777776555555 45777777777777776432 233444554 367888
Q ss_pred cCCcccccCChH
Q 047927 779 ASNKFSGRLPQK 790 (1005)
Q Consensus 779 s~N~~~~~~p~~ 790 (1005)
++|++.+.+...
T Consensus 197 ~~N~~~C~C~l~ 208 (361)
T 2xot_A 197 HNNPLECDCKLY 208 (361)
T ss_dssp CSSCEECCHHHH
T ss_pred cCCCccCCcCcH
Confidence 888888766543
No 115
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.70 E-value=1.5e-19 Score=211.00 Aligned_cols=78 Identities=23% Similarity=0.181 Sum_probs=42.7
Q ss_pred cccceEEECCCCeeeccCcccccCCCCCCEEECCCCcCcccC-chhhhcCCCCCEEeCCCCcCcccCccc---ccCCCCC
Q 047927 843 LNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSI-PSLIGNLREIESLDLSMNNLSGTIPAQ---LASLNFL 918 (1005)
Q Consensus 843 ~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~i-p~~~~~l~~L~~LdLs~N~l~~~ip~~---l~~l~~L 918 (1005)
+++|+.|+|++|++++ +| .++++++|++|+|++|+|++.+ |..++.+++|+.|+|++|++++.+|.. +..+++|
T Consensus 485 l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L 562 (567)
T 1dce_A 485 LRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSV 562 (567)
T ss_dssp CTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTC
T ss_pred CCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCccc
Confidence 3444455555555554 44 5556666666666666666554 666666666666666666666554421 2235555
Q ss_pred CeEE
Q 047927 919 SVLN 922 (1005)
Q Consensus 919 ~~L~ 922 (1005)
++||
T Consensus 563 ~~L~ 566 (567)
T 1dce_A 563 SSIL 566 (567)
T ss_dssp SEEE
T ss_pred CccC
Confidence 5554
No 116
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.69 E-value=4.2e-17 Score=163.75 Aligned_cols=155 Identities=15% Similarity=0.171 Sum_probs=106.1
Q ss_pred CCCCCccEEeCCCCeecccCcccccCCCCCCEEECCCCcCCCCcchhhhcCCCCcEEecCCCcCCcccCCCCCCCCCCCc
Q 047927 694 PANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPML 773 (1005)
Q Consensus 694 ~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L 773 (1005)
..+++|++|++++|.++ .+| .+..+++|++|++++|.++. +..+..+++|++|++++|++++.. +..+..+
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~--~~~l~~l--- 111 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDK--IPNLSGL--- 111 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGG--SCCCTTC---
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCccc--ChhhcCC---
Confidence 45567778888888777 344 57777777777777776543 335666666666666666665433 3333333
Q ss_pred cEEEccCCcccccCChHHHhhhhhhhhccCCchhhhchhhheecccccccccccEEEEEcchHHHHHHhcccceEEECCC
Q 047927 774 QIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSR 853 (1005)
Q Consensus 774 ~~L~ls~N~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~ 853 (1005)
++|+.|++++
T Consensus 112 ----------------------------------------------------------------------~~L~~L~Ls~ 121 (197)
T 4ezg_A 112 ----------------------------------------------------------------------TSLTLLDISH 121 (197)
T ss_dssp ----------------------------------------------------------------------TTCCEEECCS
T ss_pred ----------------------------------------------------------------------CCCCEEEecC
Confidence 4455666666
Q ss_pred CeeeccCcccccCCCCCCEEECCCCcCcccCchhhhcCCCCCEEeCCCCcCcccCcccccCCCCCCeEEccCCcccc
Q 047927 854 NNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLNLSYNHLVG 930 (1005)
Q Consensus 854 N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g 930 (1005)
|++++..|..++.+++|++|+|++|++.+.+| .++.+++|+.|++++|++++ +| .+..+++|++|++++|++.+
T Consensus 122 n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 122 SAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp SBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC----
T ss_pred CccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccCC
Confidence 66666667777888888888888888334566 58888888999999888886 33 68888889999999988754
No 117
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.69 E-value=1.3e-19 Score=211.35 Aligned_cols=206 Identities=21% Similarity=0.216 Sum_probs=144.6
Q ss_pred hccCCCCeEEccCccccccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCccEEeCCCCeecccCcccccCCCCC
Q 047927 644 CNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVL 723 (1005)
Q Consensus 644 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L 723 (1005)
..+++|+.|+|++|+++ .+|..+.+++ +|+.|++++|......+.. +..+...+..|+.++.+++|
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~--~L~~L~l~~n~~l~~l~~l-----------l~~~~~~~~~~~~l~~l~~L 411 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCK--ELQELEPENKWCLLTIILL-----------MRALDPLLYEKETLQYFSTL 411 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHH--HHHHHCTTCHHHHHHHHHH-----------HHHHCTGGGHHHHHHHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHH--HHHHhccccchhhhhHHHH-----------HHhcccccCCHHHHHHHHhc
Confidence 45677888888888886 6787887777 7777777665421111100 00112233445555555555
Q ss_pred CEEE-CCCCcCCCCcchhhhcCCCCcEEecCCCcCCcccCCCCCCCCCCCccEEEccCCcccccCChHHHhhhhhhhhcc
Q 047927 724 EILD-LGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDE 802 (1005)
Q Consensus 724 ~~L~-Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~~~~~~p~~~~~~l~~~~~~~ 802 (1005)
+.|+ ++.|.+ ..|..+.+.+|.+.+.. + ..|+.|++++|.+++ +|. +
T Consensus 412 ~~L~~l~~n~~-----------~~L~~l~l~~n~i~~l~--~------~~L~~L~Ls~n~l~~-lp~-~----------- 459 (567)
T 1dce_A 412 KAVDPMRAAYL-----------DDLRSKFLLENSVLKME--Y------ADVRVLHLAHKDLTV-LCH-L----------- 459 (567)
T ss_dssp HHHCGGGHHHH-----------HHHHHHHHHHHHHHHHH--H------TTCSEEECTTSCCSS-CCC-G-----------
T ss_pred ccCcchhhccc-----------chhhhhhhhcccccccC--c------cCceEEEecCCCCCC-CcC-c-----------
Confidence 5555 444432 22333444444443321 0 136677777777765 442 1
Q ss_pred CCchhhhchhhheecccccccccccEEEEEcchHHHHHHhcccceEEECCCCeeeccCcccccCCCCCCEEECCCCcCcc
Q 047927 803 GRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTG 882 (1005)
Q Consensus 803 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g 882 (1005)
..+++|+.|+|++|+++ .+|..|+++++|+.|+|++|+|++
T Consensus 460 --------------------------------------~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~ 500 (567)
T 1dce_A 460 --------------------------------------EQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN 500 (567)
T ss_dssp --------------------------------------GGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC
T ss_pred --------------------------------------cccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC
Confidence 14677889999999998 889999999999999999999997
Q ss_pred cCchhhhcCCCCCEEeCCCCcCcccC-cccccCCCCCCeEEccCCcccccCCCCC
Q 047927 883 SIPSLIGNLREIESLDLSMNNLSGTI-PAQLASLNFLSVLNLSYNHLVGRIPTST 936 (1005)
Q Consensus 883 ~ip~~~~~l~~L~~LdLs~N~l~~~i-p~~l~~l~~L~~L~ls~N~l~g~ip~~~ 936 (1005)
+| .++++++|+.|||++|+|++.+ |..++.+++|+.|+|++|+|++.+|...
T Consensus 501 -lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~ 553 (567)
T 1dce_A 501 -VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQE 553 (567)
T ss_dssp -CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTT
T ss_pred -Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHH
Confidence 78 8999999999999999999998 9999999999999999999999877543
No 118
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.67 E-value=4.7e-17 Score=171.17 Aligned_cols=124 Identities=19% Similarity=0.265 Sum_probs=71.6
Q ss_pred cCCCCeEEccCccccccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCccEEeCCCCeecccCcccccCCCCCCE
Q 047927 646 ATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEI 725 (1005)
Q Consensus 646 l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~ 725 (1005)
+.++..+++++|.+++. + .+..++ +|++|++++|.++... .+..+++|++|++++|++++..+ +..+++|+.
T Consensus 18 l~~l~~l~l~~~~i~~~-~-~~~~l~--~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~ 89 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDL-V-SQKELS--GVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEE 89 (263)
T ss_dssp HHHHHHHHHTCSCTTSE-E-CHHHHT--TCSEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCE
T ss_pred HHHHHHHHhcCCCcccc-c-chhhcC--cCcEEECcCCCcccch--HHhhCCCCCEEECCCCccCCChh--hccCCCCCE
Confidence 34455555666665532 2 345555 5666666666665432 45666677777777777765443 667777777
Q ss_pred EECCCCcCCCCcchhhhcCCCCcEEecCCCcCCcccCCCCCCCCCCCccEEEccCCccc
Q 047927 726 LDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFS 784 (1005)
Q Consensus 726 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~~~ 784 (1005)
|++++|++++..+ . .. ++|+.|++++|++++. ..+..+++|+.|++++|+++
T Consensus 90 L~L~~N~l~~l~~-~-~~-~~L~~L~L~~N~l~~~----~~l~~l~~L~~L~Ls~N~i~ 141 (263)
T 1xeu_A 90 LSVNRNRLKNLNG-I-PS-ACLSRLFLDNNELRDT----DSLIHLKNLEILSIRNNKLK 141 (263)
T ss_dssp EECCSSCCSCCTT-C-CC-SSCCEEECCSSCCSBS----GGGTTCTTCCEEECTTSCCC
T ss_pred EECCCCccCCcCc-c-cc-CcccEEEccCCccCCC----hhhcCcccccEEECCCCcCC
Confidence 7777777765322 2 22 6777777777777642 22444444555444444443
No 119
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.66 E-value=9.9e-18 Score=202.10 Aligned_cols=155 Identities=21% Similarity=0.218 Sum_probs=97.1
Q ss_pred CceEEEEecCCcccccCChhhhccCCCCeEEccCccccc---------cCCchhhhcCcccccEEECCCCcCCccccCcc
Q 047927 623 SLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSG---------MIPTCLINMSDSQLGVLNLRRNNLNGTVSATF 693 (1005)
Q Consensus 623 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~---------~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~ 693 (1005)
+....|++.+|.+... +..+ |+.++|+.|.+.+ ..|..+..+. .|+.|+|++|.+. .+|..+
T Consensus 173 ~~~~~l~L~~n~~~~~-~~~~-----l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~--~L~~L~Ls~n~l~-~l~~~~ 243 (727)
T 4b8c_D 173 PLTPKIELFANGKDEA-NQAL-----LQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQ--LWHALDLSNLQIF-NISANI 243 (727)
T ss_dssp -------------------------------------------------------CCC--CCCEEECTTSCCS-CCCGGG
T ss_pred CccceEEeeCCCCCcc-hhhH-----hhcCccCcccccCccccccceecChhhhccCC--CCcEEECCCCCCC-CCChhh
Confidence 4467788888887753 3332 3344444444332 4466777777 8999999999988 455555
Q ss_pred CCCCCccEEeCCCCeecccCcccccCCCCCCEEECCCCcCCCCcchhhhcCCCCcEEecCCCcCCcccCCCCCCCCCCCc
Q 047927 694 PANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPML 773 (1005)
Q Consensus 694 ~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L 773 (1005)
..+++|++|+|++|.++ .+|..|..+++|++|+|++|+|+ .+|..|+++++|++|+|++|.+. .+ |..+..+++|
T Consensus 244 ~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~l--p~~~~~l~~L 318 (727)
T 4b8c_D 244 FKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TL--PWEFGNLCNL 318 (727)
T ss_dssp GGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CC--CSSTTSCTTC
T ss_pred cCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-cc--ChhhhcCCCc
Confidence 68889999999999998 77888899999999999999998 67888999999999999999886 34 7778889999
Q ss_pred cEEEccCCcccccCChHH
Q 047927 774 QIIDLASNKFSGRLPQKW 791 (1005)
Q Consensus 774 ~~L~ls~N~~~~~~p~~~ 791 (1005)
+.|+|++|++++.+|..+
T Consensus 319 ~~L~L~~N~l~~~~p~~~ 336 (727)
T 4b8c_D 319 QFLGVEGNPLEKQFLKIL 336 (727)
T ss_dssp CCEECTTSCCCSHHHHHH
T ss_pred cEEeCCCCccCCCChHHH
Confidence 999999999988877554
No 120
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.66 E-value=5.4e-16 Score=155.57 Aligned_cols=153 Identities=16% Similarity=0.172 Sum_probs=131.5
Q ss_pred ccCceEEEEecCCcccccCChhhhccCCCCeEEccCccccccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCcc
Q 047927 621 FMSLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLR 700 (1005)
Q Consensus 621 ~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 700 (1005)
.++.+++|++++|.++ .+| .+..+++|++|++++|.++ .+..+..++ +|++|++++|++++..+..+..+++|+
T Consensus 42 ~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~--~L~~L~l~~n~l~~~~~~~l~~l~~L~ 115 (197)
T 4ezg_A 42 QMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLS--NLERLRIMGKDVTSDKIPNLSGLTSLT 115 (197)
T ss_dssp HHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCT--TCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred hcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCC--CCCEEEeECCccCcccChhhcCCCCCC
Confidence 3677899999999998 455 6899999999999999775 334778887 899999999999998899999999999
Q ss_pred EEeCCCCeecccCcccccCCCCCCEEECCCCc-CCCCcchhhhcCCCCcEEecCCCcCCcccCCCCCCCCCCCccEEEcc
Q 047927 701 TLDLNGNQLEGMVPKSLANCSVLEILDLGNNQ-FDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLA 779 (1005)
Q Consensus 701 ~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls 779 (1005)
+|++++|++++..|..+..+++|++|++++|+ ++. +| .+..+++|++|++++|++++. + .+..+++|+.|+++
T Consensus 116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~-~~-~l~~l~~L~~L~l~~n~i~~~---~-~l~~l~~L~~L~l~ 189 (197)
T 4ezg_A 116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITD-IM-PLKTLPELKSLNIQFDGVHDY---R-GIEDFPKLNQLYAF 189 (197)
T ss_dssp EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCC-CG-GGGGCSSCCEEECTTBCCCCC---T-TGGGCSSCCEEEEC
T ss_pred EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccc-cH-hhcCCCCCCEEECCCCCCcCh---H-HhccCCCCCEEEee
Confidence 99999999998889999999999999999998 665 45 689999999999999999862 3 67889999999999
Q ss_pred CCcccc
Q 047927 780 SNKFSG 785 (1005)
Q Consensus 780 ~N~~~~ 785 (1005)
+|++.+
T Consensus 190 ~N~i~~ 195 (197)
T 4ezg_A 190 SQTIGG 195 (197)
T ss_dssp BC----
T ss_pred CcccCC
Confidence 999864
No 121
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.65 E-value=7.1e-16 Score=153.78 Aligned_cols=138 Identities=25% Similarity=0.282 Sum_probs=108.2
Q ss_pred CeEEccCccccccCCchhhhcCcccccEEECCCCcCCccccC-ccCCCCCccEEeCCCCeecccCcccccCCCCCCEEEC
Q 047927 650 LVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSA-TFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDL 728 (1005)
Q Consensus 650 ~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L 728 (1005)
+.+++++|.++ .+|..+.. ++++|++++|++++..+. .|..+++|++|+|++|++++..|..|..+++|++|+|
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~----~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 85 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL----HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQL 85 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT----TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CEEEcCCCCcC-cCccCCCC----CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEEC
Confidence 56777777775 56654432 677888888888777664 4777888888888888888877888888888888888
Q ss_pred CCCcCCCCcchhhhcCCCCcEEecCCCcCCcccCCCCCCCCCCCccEEEccCCcccccCChHHHhh
Q 047927 729 GNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLN 794 (1005)
Q Consensus 729 s~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~~~~~~p~~~~~~ 794 (1005)
++|++++..|..|..+++|++|+|++|++++.. |..+..+++|+.|++++|++++.++..|+..
T Consensus 86 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~ 149 (192)
T 1w8a_A 86 GENKIKEISNKMFLGLHQLKTLNLYDNQISCVM--PGSFEHLNSLTSLNLASNPFNCNCHLAWFAE 149 (192)
T ss_dssp CSCCCCEECSSSSTTCTTCCEEECCSSCCCEEC--TTSSTTCTTCCEEECTTCCBCCSGGGHHHHH
T ss_pred CCCcCCccCHHHhcCCCCCCEEECCCCcCCeeC--HHHhhcCCCCCEEEeCCCCccCcCcchHHHH
Confidence 888888887877888888888888888888766 7778888889999999999998888766544
No 122
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.65 E-value=5.5e-17 Score=195.59 Aligned_cols=116 Identities=26% Similarity=0.296 Sum_probs=60.9
Q ss_pred ChhhhccCCCCeEEccCccccccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCccEEeCCCCeecccCcccccC
Q 047927 640 PESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLAN 719 (1005)
Q Consensus 640 p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~ 719 (1005)
|..+..++.|+.|+|++|.+. .+|..+..++ +|++|+|++|.++ .+|..|..+++|++|+|++|+|+ .+|..|..
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~--~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~ 291 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIF-NISANIFKYD--FLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGS 291 (727)
T ss_dssp -----CCCCCCEEECTTSCCS-CCCGGGGGCC--SCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGG
T ss_pred hhhhccCCCCcEEECCCCCCC-CCChhhcCCC--CCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcC
Confidence 444555555555555555555 4444444554 5555555555555 44455555555555555555555 44555555
Q ss_pred CCCCCEEECCCCcCCCCcchhhhcCCCCcEEecCCCcCCccc
Q 047927 720 CSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNI 761 (1005)
Q Consensus 720 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~ 761 (1005)
+++|++|+|++|.++ .+|..|+++++|++|+|++|++++.+
T Consensus 292 l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~ 332 (727)
T 4b8c_D 292 CFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQF 332 (727)
T ss_dssp GTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHH
T ss_pred CCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCC
Confidence 555555555555554 34444555555555555555555443
No 123
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.58 E-value=1.1e-14 Score=145.10 Aligned_cols=138 Identities=20% Similarity=0.218 Sum_probs=86.7
Q ss_pred CeEEccCccccccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCccEEeCCCCeecccCcccccCCCCCCEEECC
Q 047927 650 LVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLG 729 (1005)
Q Consensus 650 ~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls 729 (1005)
+.+++++|.++ .+|..+. . +|++|++++|+++ .+|..|..+++|++|+|++|++++..+..|.++++|++|+|+
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~--~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls 86 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--R--DVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILS 86 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--T--TCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCCCC-cCCCCCC--C--CCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECC
Confidence 34555555555 3444332 1 5666666666665 334556666666666666666666666666666666666666
Q ss_pred CCcCCCCcchhhhcCCCCcEEecCCCcCCcccCCCCCCCCCCCccEEEccCCcccccCChHHHhhh
Q 047927 730 NNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNL 795 (1005)
Q Consensus 730 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~~~~~~p~~~~~~l 795 (1005)
+|++++..|..|..+++|++|+|++|++++.. +..+..+++|+.|++++|++.+.+...|+..+
T Consensus 87 ~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~L~~N~~~C~c~l~~l~~~ 150 (193)
T 2wfh_A 87 YNRLRCIPPRTFDGLKSLRLLSLHGNDISVVP--EGAFNDLSALSHLAIGANPLYCDCNMQWLSDW 150 (193)
T ss_dssp SSCCCBCCTTTTTTCTTCCEEECCSSCCCBCC--TTTTTTCTTCCEEECCSSCEECSGGGHHHHHH
T ss_pred CCccCEeCHHHhCCCCCCCEEECCCCCCCeeC--hhhhhcCccccEEEeCCCCeecCCcCHHHHHH
Confidence 66666666666666666667777776666432 33466677777888888888777776666554
No 124
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.56 E-value=1.4e-14 Score=141.29 Aligned_cols=83 Identities=23% Similarity=0.175 Sum_probs=46.3
Q ss_pred eEEECCCCeeeccCcccccCCCCCCEEECCCCcCccc-CchhhhcCCCCCEEeCCCCcCcccCc---ccccCCCCCCeEE
Q 047927 847 TSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGS-IPSLIGNLREIESLDLSMNNLSGTIP---AQLASLNFLSVLN 922 (1005)
Q Consensus 847 ~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~-ip~~~~~l~~L~~LdLs~N~l~~~ip---~~l~~l~~L~~L~ 922 (1005)
+.|+|++|++++.+|..++.+++|++|+|++|++++. .+..++.+++|+.|++++|.+++..+ ..+..+++|++||
T Consensus 74 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~ 153 (168)
T 2ell_A 74 KKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLD 153 (168)
T ss_dssp CEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEET
T ss_pred CEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEec
Confidence 3333333333333444444556666666666666642 12556666666666666666665544 3566666666666
Q ss_pred ccCCccc
Q 047927 923 LSYNHLV 929 (1005)
Q Consensus 923 ls~N~l~ 929 (1005)
+++|.+.
T Consensus 154 l~~n~~~ 160 (168)
T 2ell_A 154 GYDREDQ 160 (168)
T ss_dssp TEETTSC
T ss_pred CCCCChh
Confidence 6666654
No 125
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.55 E-value=3.7e-14 Score=139.48 Aligned_cols=133 Identities=22% Similarity=0.194 Sum_probs=106.6
Q ss_pred CCeEEccCccccccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCccEEeCCCCeecccCcccccCCCCCCEEEC
Q 047927 649 LLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDL 728 (1005)
Q Consensus 649 L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L 728 (1005)
.+.+++++|.++ .+|..+. + +|++|++++|++++..+..|..+++|++|++++|++++..+..|..+++|++|++
T Consensus 9 ~~~l~~~~~~l~-~~p~~~~--~--~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 83 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGIP--S--SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYL 83 (177)
T ss_dssp TTEEECCSSCCS-SCCTTCC--T--TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCEEEecCCCCc-cCCCCCC--C--CCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEEC
Confidence 456777777776 4554432 2 7888888888888777777888888888888888888777777888888999999
Q ss_pred CCCcCCCCcchhhhcCCCCcEEecCCCcCCcccCCCCCCCCCCCccEEEccCCcccccCC
Q 047927 729 GNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLP 788 (1005)
Q Consensus 729 s~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~~~~~~p 788 (1005)
++|++++..+..|..+++|++|++++|++++.. +..+..+++|+.|++++|++.+.+|
T Consensus 84 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~--~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 84 HENKLQSLPNGVFDKLTQLKELALDTNQLKSVP--DGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC--TTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCCCccccCHHHhhCCcccCEEECcCCcceEeC--HHHhcCCcccCEEEecCCCeeccCc
Confidence 999888888888888889999999999887543 4445778999999999999998877
No 126
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.55 E-value=9.9e-15 Score=159.50 Aligned_cols=103 Identities=17% Similarity=0.156 Sum_probs=77.0
Q ss_pred ccCCCCeEEccCccccccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCcc-EEeCCCCeecccCcccccCCCCC
Q 047927 645 NATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLR-TLDLNGNQLEGMVPKSLANCSVL 723 (1005)
Q Consensus 645 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~-~L~L~~N~l~~~~p~~l~~l~~L 723 (1005)
.+++|+.++|++|+++...+..|.++. +|+.+++.+| +..+.+.+|.++++|+ .+++.+ .++.+.+.+|.+|++|
T Consensus 224 ~~~~L~~l~L~~n~i~~I~~~aF~~~~--~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L 299 (329)
T 3sb4_A 224 YMPNLVSLDISKTNATTIPDFTFAQKK--YLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNL 299 (329)
T ss_dssp HCTTCCEEECTTBCCCEECTTTTTTCT--TCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTE
T ss_pred hcCCCeEEECCCCCcceecHhhhhCCC--CCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccC
Confidence 367778888887777765566677776 7777777776 7667777777777787 777777 6666667777888888
Q ss_pred CEEECCCCcCCCCcchhhhcCCCCcEEe
Q 047927 724 EILDLGNNQFDDTFPCWVKNASRLHVLI 751 (1005)
Q Consensus 724 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 751 (1005)
+.+++++|.++.+.+..|.++++|+.++
T Consensus 300 ~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 300 RYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred CEEEeCCCccCccchhhhcCCcchhhhc
Confidence 8888777777777777777777777765
No 127
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.54 E-value=2.5e-14 Score=136.28 Aligned_cols=39 Identities=23% Similarity=0.216 Sum_probs=22.1
Q ss_pred ccccCCCCCCEEECCCCcCcccCc---hhhhcCCCCCEEeCC
Q 047927 862 EEMGLLQSLCALNLSHNALTGSIP---SLIGNLREIESLDLS 900 (1005)
Q Consensus 862 ~~~~~l~~L~~L~Ls~N~l~g~ip---~~~~~l~~L~~LdLs 900 (1005)
..++.+++|++|++++|++++..+ ..++.+++|+.||++
T Consensus 107 ~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 107 EPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp GGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred HHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 345555566666666666665443 355566666666654
No 128
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.54 E-value=3.9e-14 Score=140.96 Aligned_cols=128 Identities=23% Similarity=0.347 Sum_probs=101.3
Q ss_pred EEEecCCcccccCChhhhccCCCCeEEccCccccccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCccEEeCCC
Q 047927 627 FFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNG 706 (1005)
Q Consensus 627 ~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 706 (1005)
++++++|.++ .+|..+ .++|+.|++++|+++ .+|..+..++ +|+.|++++|++++..+..|.++++|++|+|++
T Consensus 14 ~l~~~~~~l~-~ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~--~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 14 VVRCSNKGLK-VLPKGI--PRDVTELYLDGNQFT-LVPKELSNYK--HLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp EEECTTSCCS-SCCSCC--CTTCCEEECCSSCCC-SCCGGGGGCT--TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred EEEcCCCCCC-cCCCCC--CCCCCEEECCCCcCc-hhHHHhhccc--CCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence 4566666665 344443 257888888888887 6777788777 788888888888888888888888888888888
Q ss_pred CeecccCcccccCCCCCCEEECCCCcCCCCcchhhhcCCCCcEEecCCCcCCcc
Q 047927 707 NQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGN 760 (1005)
Q Consensus 707 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 760 (1005)
|++++..|..|..+++|++|+|++|+++...+..|..+++|+.|++++|++.+.
T Consensus 88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~ 141 (193)
T 2wfh_A 88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCD 141 (193)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred CccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecC
Confidence 888888788888888888888888888877777788888888888888887653
No 129
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.53 E-value=1.2e-14 Score=141.65 Aligned_cols=133 Identities=20% Similarity=0.120 Sum_probs=92.9
Q ss_pred cCCCCeEEccCcccc-ccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCccEEeCCCCeecccCcccccCCCCCC
Q 047927 646 ATNLLVLDLSYNYLS-GMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLE 724 (1005)
Q Consensus 646 l~~L~~L~Ls~N~l~-~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~ 724 (1005)
.++|+.|++++|.++ +.+|..+..++ +|++|++++|.+++. ..+..+++|++|++++|++++.+|..+..+++|+
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~--~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 98 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFV--NLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLT 98 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGG--GCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCC
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCC--CCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCC
Confidence 356777777777776 56666666665 677777777777665 5667777777777777777766677676777777
Q ss_pred EEECCCCcCCCCc-chhhhcCCCCcEEecCCCcCCcccCCC---CCCCCCCCccEEEccCCccc
Q 047927 725 ILDLGNNQFDDTF-PCWVKNASRLHVLILRSNNFFGNISCP---RYNVSWPMLQIIDLASNKFS 784 (1005)
Q Consensus 725 ~L~Ls~N~l~~~~-p~~~~~l~~L~~L~L~~N~l~~~~~~~---~~~~~l~~L~~L~ls~N~~~ 784 (1005)
+|++++|++++.. +..+..+++|+.|++++|++++.. + ..+..+++|+.|++++|.+.
T Consensus 99 ~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~--~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 99 HLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLN--DYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp EEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTST--THHHHHHTTCSSCCEETTEETTSC
T ss_pred EEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchH--HHHHHHHHhCccCcEecCCCCChh
Confidence 7777777777643 266777777777777777776542 2 25667777777777777765
No 130
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.51 E-value=1.2e-14 Score=138.47 Aligned_cols=127 Identities=20% Similarity=0.191 Sum_probs=71.4
Q ss_pred CCCCeEEccCcccc-ccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCccEEeCCCCeecccCcccccCCCCCCE
Q 047927 647 TNLLVLDLSYNYLS-GMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEI 725 (1005)
Q Consensus 647 ~~L~~L~Ls~N~l~-~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~ 725 (1005)
++|+.|++++|.++ +.+|..+..++ +|++|++++|.+++. ..+..+++|++|++++|++++.+|..+..+++|++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~--~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFE--ELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCT--TCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcC--CCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 34555555555554 44555445544 555555555555544 44555566666666666666555555555666666
Q ss_pred EECCCCcCCCC-cchhhhcCCCCcEEecCCCcCCcccCCC---CCCCCCCCccEEEcc
Q 047927 726 LDLGNNQFDDT-FPCWVKNASRLHVLILRSNNFFGNISCP---RYNVSWPMLQIIDLA 779 (1005)
Q Consensus 726 L~Ls~N~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~~~~~---~~~~~l~~L~~L~ls 779 (1005)
|++++|++++. .+..++.+++|++|++++|++++.. + ..+..+++|+.||++
T Consensus 93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~--~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLN--DYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGST--THHHHHHHHCTTCCEETTB
T ss_pred EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchH--HHHHHHHHHCCCcccccCC
Confidence 66666666553 2355666666666666666665432 1 234556666666654
No 131
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.50 E-value=1.3e-13 Score=135.53 Aligned_cols=131 Identities=21% Similarity=0.256 Sum_probs=96.3
Q ss_pred EEEEecCCcccccCChhhhccCCCCeEEccCccccccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCccEEeCC
Q 047927 626 IFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLN 705 (1005)
Q Consensus 626 ~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 705 (1005)
+.++++++.++. +|..+ .++|+.|++++|++++..+..+..++ +|++|++++|++++..+..|..+++|++|+++
T Consensus 10 ~~l~~~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~--~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 84 (177)
T 2o6r_A 10 TEIRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLT--QLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH 84 (177)
T ss_dssp TEEECCSSCCSS-CCTTC--CTTCSEEECCSSCCCCCCTTTTTTCT--TCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CEEEecCCCCcc-CCCCC--CCCCcEEEeCCCcccEeCHHHhcCcc--cccEEECCCCcceEeChhHccCCCccCEEECC
Confidence 345555555553 33322 35778888888888766556666766 78888888888887777777788888888888
Q ss_pred CCeecccCcccccCCCCCCEEECCCCcCCCCcchhhhcCCCCcEEecCCCcCCccc
Q 047927 706 GNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNI 761 (1005)
Q Consensus 706 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~ 761 (1005)
+|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|++.+..
T Consensus 85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 140 (177)
T 2o6r_A 85 ENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 140 (177)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred CCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence 88888777777788888888888888888776666777888888888888877643
No 132
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.48 E-value=2.3e-14 Score=156.58 Aligned_cols=247 Identities=12% Similarity=0.103 Sum_probs=154.1
Q ss_pred CceEEEEecCCcccccCChhhhc-cCCCCeEEccCcccc--ccCCchhhhcCcccccEEECCCCcCCccccCccCC----
Q 047927 623 SLSIFFSFSKNSLTGVIPESICN-ATNLLVLDLSYNYLS--GMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPA---- 695 (1005)
Q Consensus 623 ~~L~~L~l~~n~l~~~~p~~l~~-l~~L~~L~Ls~N~l~--~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~---- 695 (1005)
..++.|.++++- .......+.. +++|+.|||++|++. ...+..+. .+..+.+..|. +.+.+|.+
T Consensus 25 ~~l~~L~l~g~i-~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~-----~~~~~~~~~~~---I~~~aF~~~~~~ 95 (329)
T 3sb4_A 25 NSITHLTLTGKL-NAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTYP-----NGKFYIYMANF---VPAYAFSNVVNG 95 (329)
T ss_dssp HHCSEEEEEEEE-CHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSSG-----GGCCEEECTTE---ECTTTTEEEETT
T ss_pred CceeEEEEeccc-cHHHHHHHHHhhccCeEEecCcceeEEecCcccccc-----ccccccccccc---cCHHHhcccccc
Confidence 445666665431 1111123444 677888888888776 21111111 12333344442 23345555
Q ss_pred ----CCCccEEeCCCCeecccCcccccCCCCCCEEECCCCcCCCCcchhhhcCCCCcEEecCCCcCCcccC--CCCCCCC
Q 047927 696 ----NCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNIS--CPRYNVS 769 (1005)
Q Consensus 696 ----l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~--~~~~~~~ 769 (1005)
+++|+.|+|.+ .++.+.+.+|.+|++|+.+++++|.++.+.+..|..+.++..+.+..+....... ....+..
T Consensus 96 ~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~ 174 (329)
T 3sb4_A 96 VTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIE 174 (329)
T ss_dssp EEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEE
T ss_pred cccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccc
Confidence 77777777777 6666666677777777777777777776666677776666666555422100000 0111112
Q ss_pred --------------------------CCCccEEEccCCcccccCChHHHhhhhhhhhccCCchhhhchhhheeccccccc
Q 047927 770 --------------------------WPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAY 823 (1005)
Q Consensus 770 --------------------------l~~L~~L~ls~N~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 823 (1005)
..+++.+.+.++ +....+
T Consensus 175 ~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~-----l~~~~~------------------------------- 218 (329)
T 3sb4_A 175 GEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGK-----LDNADF------------------------------- 218 (329)
T ss_dssp SCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEEC-----CCHHHH-------------------------------
T ss_pred ccccceeEEecCCCcHHHHHhhcccCccccceEEEeee-----ecHHHH-------------------------------
Confidence 223333433332 111110
Q ss_pred ccccEEEEEcchHHHHHHhcccceEEECCCCeeeccCcccccCCCCCCEEECCCCcCcccCchhhhcCCCCC-EEeCCCC
Q 047927 824 YQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIE-SLDLSMN 902 (1005)
Q Consensus 824 ~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~-~LdLs~N 902 (1005)
..+...+++|+.++|++|+++...+..|.++++|+.|+|++| ++..-+..|.++++|+ .+++.+
T Consensus 219 -------------~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~- 283 (329)
T 3sb4_A 219 -------------KLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA- 283 (329)
T ss_dssp -------------HHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-
T ss_pred -------------HHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-
Confidence 011124678999999999999666678999999999999998 8766677889999999 999998
Q ss_pred cCcccCcccccCCCCCCeEEccCCcccc
Q 047927 903 NLSGTIPAQLASLNFLSVLNLSYNHLVG 930 (1005)
Q Consensus 903 ~l~~~ip~~l~~l~~L~~L~ls~N~l~g 930 (1005)
+++.+-+.+|.++++|+.+++++|+++.
T Consensus 284 ~l~~I~~~aF~~c~~L~~l~l~~n~i~~ 311 (329)
T 3sb4_A 284 SVTAIEFGAFMGCDNLRYVLATGDKITT 311 (329)
T ss_dssp TCCEECTTTTTTCTTEEEEEECSSCCCE
T ss_pred cceEEchhhhhCCccCCEEEeCCCccCc
Confidence 8887888999999999999999999875
No 133
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.46 E-value=1.3e-13 Score=134.13 Aligned_cols=92 Identities=20% Similarity=0.174 Sum_probs=85.7
Q ss_pred ccceEEECCCCeeeccCcccccCCCCCCEEECCCCcCcccCchhhhcCCCCCEEeCCCCcCcccCcccccCCCCCCeEEc
Q 047927 844 NIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLNL 923 (1005)
Q Consensus 844 ~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~l 923 (1005)
+.++.|+|++|++++..|..|+++++|++|+|++|+|++..|..|+.+++|++|+|++|+|++..|..|.++++|++|+|
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 109 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL 109 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence 56789999999999999999999999999999999999877777899999999999999999888888999999999999
Q ss_pred cCCcccccCCCC
Q 047927 924 SYNHLVGRIPTS 935 (1005)
Q Consensus 924 s~N~l~g~ip~~ 935 (1005)
++|+++|.++..
T Consensus 110 ~~N~~~c~c~~l 121 (170)
T 3g39_A 110 LNNPWDCACSDI 121 (170)
T ss_dssp CSSCBCTTBGGG
T ss_pred CCCCCCCCchhH
Confidence 999999987643
No 134
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.45 E-value=1.2e-15 Score=153.20 Aligned_cols=83 Identities=20% Similarity=0.184 Sum_probs=54.7
Q ss_pred cccceEEECCCCeeeccCcccccCCCCCCEEECCCCcCcccCc-hhhhcCCCCCEEeCCCCcCcccCccc----------
Q 047927 843 LNIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIP-SLIGNLREIESLDLSMNNLSGTIPAQ---------- 911 (1005)
Q Consensus 843 ~~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip-~~~~~l~~L~~LdLs~N~l~~~ip~~---------- 911 (1005)
++.|+.|++++|++++ +| .++.+++|++|+|++|++++..+ ..++.+++|+.|++++|.+++.+|..
T Consensus 92 ~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~ 169 (198)
T 1ds9_A 92 ADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEV 169 (198)
T ss_dssp HHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHH
T ss_pred CCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHH
Confidence 3456667777777765 34 46667777777777777774222 35677777777777777777766653
Q ss_pred ccCCCCCCeEEccCCccc
Q 047927 912 LASLNFLSVLNLSYNHLV 929 (1005)
Q Consensus 912 l~~l~~L~~L~ls~N~l~ 929 (1005)
+..+++|++|| +|.++
T Consensus 170 ~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 170 VKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp HHHCSSCSEEC--CGGGT
T ss_pred HHhCCCcEEEC--CcccC
Confidence 66777777776 55554
No 135
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.42 E-value=1.9e-13 Score=134.06 Aligned_cols=134 Identities=20% Similarity=0.188 Sum_probs=103.7
Q ss_pred hhhccCCCCeEEccCccccccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCccEEeCCCCeecccCcccccCCC
Q 047927 642 SICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCS 721 (1005)
Q Consensus 642 ~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 721 (1005)
.+.++++|+.|++++|+++. +|......+ +|++|++++|.+++. ..|..+++|++|++++|++++..+..+..++
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~-i~~~~~~~~--~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 88 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPV-IENLGATLD--QFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALP 88 (176)
T ss_dssp EEECTTSCEEEECTTSCCCS-CCCGGGGTT--CCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCT
T ss_pred hcCCcCCceEEEeeCCCCch-hHHhhhcCC--CCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCC
Confidence 34567788888888888873 454333333 788888888888876 6788888899999999998876556668889
Q ss_pred CCCEEECCCCcCCCCcch--hhhcCCCCcEEecCCCcCCcccCCCCC----CCCCCCccEEEccCCccc
Q 047927 722 VLEILDLGNNQFDDTFPC--WVKNASRLHVLILRSNNFFGNISCPRY----NVSWPMLQIIDLASNKFS 784 (1005)
Q Consensus 722 ~L~~L~Ls~N~l~~~~p~--~~~~l~~L~~L~L~~N~l~~~~~~~~~----~~~l~~L~~L~ls~N~~~ 784 (1005)
+|++|++++|+++. +|. .+..+++|+.|++++|++... |.. +..+++|+.||+++|...
T Consensus 89 ~L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~~~---~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 89 DLTELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVTNK---KHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp TCCEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGGGS---TTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CCCEEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCCCc---HhHHHHHHHHCCccceeCCCcCCHH
Confidence 99999999999865 454 788889999999999988642 553 778899999999988765
No 136
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.42 E-value=3.6e-13 Score=131.32 Aligned_cols=91 Identities=20% Similarity=0.180 Sum_probs=83.8
Q ss_pred ccceEEECCCCeeeccCcccccCCCCCCEEECCCCcCcccCchhhhcCCCCCEEeCCCCcCcccCcccccCCCCCCeEEc
Q 047927 844 NIFTSIDFSRNNFEGPIPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLNL 923 (1005)
Q Consensus 844 ~~l~~L~Ls~N~l~g~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~l 923 (1005)
+.++.|+|++|++++.+|..|+++++|++|+|++|+|++..+..++++++|+.|||++|+|++..|..|..+++|++|++
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L 112 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL 112 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence 56789999999999999999999999999999999999866666799999999999999999877777999999999999
Q ss_pred cCCcccccCCC
Q 047927 924 SYNHLVGRIPT 934 (1005)
Q Consensus 924 s~N~l~g~ip~ 934 (1005)
++|++++..+.
T Consensus 113 ~~N~~~c~~~~ 123 (174)
T 2r9u_A 113 YNNPWDCECRD 123 (174)
T ss_dssp CSSCBCTTBGG
T ss_pred CCCCccccccc
Confidence 99999987653
No 137
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.40 E-value=3.6e-15 Score=149.68 Aligned_cols=63 Identities=19% Similarity=0.153 Sum_probs=50.5
Q ss_pred hcccceEEECCCCeeeccCc-ccccCCCCCCEEECCCCcCcccCchh----------hhcCCCCCEEeCCCCcCcc
Q 047927 842 ILNIFTSIDFSRNNFEGPIP-EEMGLLQSLCALNLSHNALTGSIPSL----------IGNLREIESLDLSMNNLSG 906 (1005)
Q Consensus 842 ~~~~l~~L~Ls~N~l~g~ip-~~~~~l~~L~~L~Ls~N~l~g~ip~~----------~~~l~~L~~LdLs~N~l~~ 906 (1005)
.++.|+.|++++|++++..+ ..++.+++|++|++++|.+++.+|.. +..+++|+.|| +|.++.
T Consensus 113 ~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 113 KLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp HHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred cCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence 35678888899888885433 57889999999999999999887764 88999999998 676653
No 138
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.40 E-value=6.1e-12 Score=140.01 Aligned_cols=267 Identities=11% Similarity=0.129 Sum_probs=136.2
Q ss_pred CCCcEEECCCCcceeccchhHHHhcCCCCeEeccCCeeeEecCCcccccCcccceEEcCCccCcCCCC--CCCCCceeEE
Q 047927 454 KNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRLAVVAGSSVYCFPPLLTTLSLASCKLSAIPN--LRKQTKLYHL 531 (1005)
Q Consensus 454 ~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~l~~--l~~l~~L~~L 531 (1005)
..++.+.+.++ ++ .++..+|.++ +|+.+.+..+ ++.++..+|.. ..|+.+.+.. .++.++. |..|++|+.+
T Consensus 113 ~~l~~i~ip~~-i~-~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~--~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l 185 (401)
T 4fdw_A 113 KGYNEIILPNS-VK-SIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN--STVQEIVFPS-TLEQLKEDIFYYCYNLKKA 185 (401)
T ss_dssp SSCSEEECCTT-CC-EECTTTTTTC-CCSEEECCTT-CCEECTTTTTT--CCCCEEECCT-TCCEECSSTTTTCTTCCEE
T ss_pred CCccEEEECCc-cC-EehHhhcccC-CccEEEeCCC-ccEECHHhcCC--CCceEEEeCC-CccEehHHHhhCcccCCee
Confidence 44555555442 22 4455555554 5666666554 55566555544 2467777765 5666654 7778888888
Q ss_pred ECcCCcCCCCCChhhhhhcCCcccEEeCCCCcccCCCCCCccccCCcccEEEeccCcccccCCCCCCCcceeeCcCCcCc
Q 047927 532 DLSDNQISGEIPNWLWKIGKDSFNHLNLSHNLLVSLEQPYSISDLTSLSVLDLHSNQIQGKIPPLPPNAAYVDYSGNNFT 611 (1005)
Q Consensus 532 ~Ls~n~l~~~~p~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ls~n~~~ 611 (1005)
++.+|.++ .++...+. ...|+.+.+..+ +..+. ..+|.+|++|+.+++..+ ++
T Consensus 186 ~l~~n~l~-~I~~~aF~--~~~L~~l~lp~~-l~~I~-~~aF~~~~~L~~l~l~~~-l~--------------------- 238 (401)
T 4fdw_A 186 DLSKTKIT-KLPASTFV--YAGIEEVLLPVT-LKEIG-SQAFLKTSQLKTIEIPEN-VS--------------------- 238 (401)
T ss_dssp ECTTSCCS-EECTTTTT--TCCCSEEECCTT-CCEEC-TTTTTTCTTCCCEECCTT-CC---------------------
T ss_pred ecCCCcce-EechhhEe--ecccCEEEeCCc-hheeh-hhHhhCCCCCCEEecCCC-cc---------------------
Confidence 88888776 34443332 245666666643 44332 235667777777776543 21
Q ss_pred cCCCcchhcccCceEEEEecCCcccccCChhhhccCCCCeEEccCccccccCCchhhhcCcccccEEECCCCcCCccccC
Q 047927 612 SSIPVDIGSFMSLSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSA 691 (1005)
Q Consensus 612 ~~~p~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~ 691 (1005)
.++...+.. ..|+.+.+ .+.++..-+..|.+|++|+.+++.+|.+.. +....+.+.
T Consensus 239 -~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~---------------------~~~~~I~~~ 294 (401)
T 4fdw_A 239 -TIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFND---------------------DPEAMIHPY 294 (401)
T ss_dssp -EECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCC---------------------CTTCEECTT
T ss_pred -Ccccccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccC---------------------CcccEECHH
Confidence 111222222 34455555 233443444555556666666655554430 000123344
Q ss_pred ccCCCCCccEEeCCCCeecccCcccccCCCCCCEEECCCCcCCCCcchhhhcCCCCcEEecCCCcCCcccCCCCCCCCC-
Q 047927 692 TFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSW- 770 (1005)
Q Consensus 692 ~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l- 770 (1005)
+|.++++|+.+++.+ .++.+...+|.+|++|+.++|..| ++.+.+.+|.++ +|+.+++.+|...... +..+..+
T Consensus 295 aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~--~~~F~~~~ 369 (401)
T 4fdw_A 295 CLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVF--EKVWYGFP 369 (401)
T ss_dssp TTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCC--CSSCCCSC
T ss_pred HhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccc--cccccCCC
Confidence 455555555555552 344444455555555555555333 444444555555 5555555555443211 2223333
Q ss_pred CCccEEEccCCcc
Q 047927 771 PMLQIIDLASNKF 783 (1005)
Q Consensus 771 ~~L~~L~ls~N~~ 783 (1005)
..++.|.+..+.+
T Consensus 370 ~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 370 DDITVIRVPAESV 382 (401)
T ss_dssp TTCCEEEECGGGH
T ss_pred CCccEEEeCHHHH
Confidence 2455666655543
No 139
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.38 E-value=6.3e-13 Score=130.39 Aligned_cols=130 Identities=15% Similarity=0.093 Sum_probs=107.3
Q ss_pred cCceEEEEecCCcccccCChhhhccC-CCCeEEccCccccccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCcc
Q 047927 622 MSLSIFFSFSKNSLTGVIPESICNAT-NLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLR 700 (1005)
Q Consensus 622 ~~~L~~L~l~~n~l~~~~p~~l~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 700 (1005)
+..++.|++++|.++.. |. +..+. +|+.|++++|.+++. ..+..++ +|++|++++|++++..+..|..+++|+
T Consensus 18 ~~~L~~L~l~~n~l~~i-~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~--~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPVI-EN-LGATLDQFDAIDFSDNEIRKL--DGFPLLR--RLKTLLVNNNRICRIGEGLDQALPDLT 91 (176)
T ss_dssp TTSCEEEECTTSCCCSC-CC-GGGGTTCCSEEECCSSCCCEE--CCCCCCS--SCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred cCCceEEEeeCCCCchh-HH-hhhcCCCCCEEECCCCCCCcc--cccccCC--CCCEEECCCCcccccCcchhhcCCCCC
Confidence 66788888888888854 54 44444 999999999999865 5677777 899999999999987666678899999
Q ss_pred EEeCCCCeecccCcc--cccCCCCCCEEECCCCcCCCCcch----hhhcCCCCcEEecCCCcCCc
Q 047927 701 TLDLNGNQLEGMVPK--SLANCSVLEILDLGNNQFDDTFPC----WVKNASRLHVLILRSNNFFG 759 (1005)
Q Consensus 701 ~L~L~~N~l~~~~p~--~l~~l~~L~~L~Ls~N~l~~~~p~----~~~~l~~L~~L~L~~N~l~~ 759 (1005)
+|++++|+++. +|. .+..+++|+.|++++|+++. +|. .+..+++|+.|++++|....
T Consensus 92 ~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 92 ELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp EEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred EEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 99999999974 555 88999999999999999985 455 48999999999999998643
No 140
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.37 E-value=2e-12 Score=125.62 Aligned_cols=104 Identities=25% Similarity=0.253 Sum_probs=56.6
Q ss_pred CCeEEccCccccccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCccEEeCCCCeecccCcccccCCCCCCEEEC
Q 047927 649 LLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDL 728 (1005)
Q Consensus 649 L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L 728 (1005)
.+.+++++|.++ .+|..+. . +|++|+|++|++++..|..|..+++|++|+|++|++++..+..|..+++|++|+|
T Consensus 11 ~~~l~~s~n~l~-~ip~~~~--~--~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 85 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGIP--T--TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSL 85 (170)
T ss_dssp TTEEECTTSCCS-SCCSCCC--T--TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCEEEeCCCCcC-ccCccCC--C--CCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEEC
Confidence 345666666665 3444332 2 5566666666666555555555555666666666555555555555555555555
Q ss_pred CCCcCCCCcchhhhcCCCCcEEecCCCcC
Q 047927 729 GNNQFDDTFPCWVKNASRLHVLILRSNNF 757 (1005)
Q Consensus 729 s~N~l~~~~p~~~~~l~~L~~L~L~~N~l 757 (1005)
++|++++..+..|..+++|++|+|++|++
T Consensus 86 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 86 NDNQLKSIPRGAFDNLKSLTHIWLLNNPW 114 (170)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CCCccCEeCHHHhcCCCCCCEEEeCCCCC
Confidence 55555554444444444444444444444
No 141
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.34 E-value=4.6e-12 Score=123.43 Aligned_cols=104 Identities=19% Similarity=0.224 Sum_probs=62.3
Q ss_pred CeEEccCccccccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCccEEeCCCCeecccCcccccCCCCCCEEECC
Q 047927 650 LVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLG 729 (1005)
Q Consensus 650 ~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls 729 (1005)
+.+++++|.++ .+|..+. . +|++|+|++|++++..|..|..+++|++|+|++|++++..+..|..+++|++|+|+
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~--~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~ 89 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--T--DKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN 89 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--T--TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred cEEEeCCCCCC-ccCCCcC--C--CCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECC
Confidence 56677777665 4555443 2 56666666666666666666666666666666666665555555666666666666
Q ss_pred CCcCCCCcchhhhcCCCCcEEecCCCcCC
Q 047927 730 NNQFDDTFPCWVKNASRLHVLILRSNNFF 758 (1005)
Q Consensus 730 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 758 (1005)
+|++++..+..|..+++|++|+|++|++.
T Consensus 90 ~N~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 90 DNHLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp SSCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred CCccceeCHHHhccccCCCEEEeCCCCcc
Confidence 66666554444555555555555555443
No 142
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.32 E-value=2.7e-11 Score=134.77 Aligned_cols=241 Identities=11% Similarity=0.083 Sum_probs=120.8
Q ss_pred ceEEEEecCCcccccCChhhhccCCCCeEEccCccccccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCccEEe
Q 047927 624 LSIFFSFSKNSLTGVIPESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLD 703 (1005)
Q Consensus 624 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 703 (1005)
.|+.+.+.++ ++..-..+|.++ +|+.+++.+ .+....+.+|.++. +|+.+++.+|+++.+...+|. .++|+.+.
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~--~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~ 209 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCY--NLKKADLSKTKITKLPASTFV-YAGIEEVL 209 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCT--TCCEEECTTSCCSEECTTTTT-TCCCSEEE
T ss_pred CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcc--cCCeeecCCCcceEechhhEe-ecccCEEE
Confidence 3455555443 443444445553 466666654 44444445555555 566666666666655555555 35666666
Q ss_pred CCCCeecccCcccccCCCCCCEEECCCCcCCCCcchhhhcCCCCcEEecCCCcCCcccCCCCCCCCCCCccEEEccCCcc
Q 047927 704 LNGNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKF 783 (1005)
Q Consensus 704 L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~~ 783 (1005)
+..+ ++.+...+|.+|++|+.+++.+| ++.+....|.+ .+|+.+.+. +.+...- ...+..+++|+.+++.+|.+
T Consensus 210 lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~--~~aF~~c~~L~~l~l~~~~~ 283 (401)
T 4fdw_A 210 LPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIA--SRAFYYCPELAEVTTYGSTF 283 (401)
T ss_dssp CCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEEC--TTTTTTCTTCCEEEEESSCC
T ss_pred eCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccEEC--hhHhhCCCCCCEEEeCCccc
Confidence 6533 55455556666666666666553 44444445555 456666552 2222111 33445555555555555544
Q ss_pred cc----cCChHHHhhhhhhhhccCCchhhhchhhheecccccccccccEEEEEcchHHHHHHhcccceEEECCCCeeecc
Q 047927 784 SG----RLPQKWLLNLEAMMVDEGRSQSELKHLQYRFLNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSRNNFEGP 859 (1005)
Q Consensus 784 ~~----~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~N~l~g~ 859 (1005)
.. .++... +..+++|+.++|.+ +++..
T Consensus 284 ~~~~~~~I~~~a------------------------------------------------F~~c~~L~~l~l~~-~i~~I 314 (401)
T 4fdw_A 284 NDDPEAMIHPYC------------------------------------------------LEGCPKLARFEIPE-SIRIL 314 (401)
T ss_dssp CCCTTCEECTTT------------------------------------------------TTTCTTCCEECCCT-TCCEE
T ss_pred cCCcccEECHHH------------------------------------------------hhCCccCCeEEeCC-ceEEE
Confidence 31 011100 11344555555552 24433
Q ss_pred CcccccCCCCCCEEECCCCcCcccCchhhhcCCCCCEEeCCCCcCcccCcccccCCC-CCCeEEccCCc
Q 047927 860 IPEEMGLLQSLCALNLSHNALTGSIPSLIGNLREIESLDLSMNNLSGTIPAQLASLN-FLSVLNLSYNH 927 (1005)
Q Consensus 860 ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~-~L~~L~ls~N~ 927 (1005)
-...|.++++|+.++|..| ++..-+..|.++ +|+.+++++|.+....+..|.+++ .++.+.+..|.
T Consensus 315 ~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 315 GQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp CTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred hhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence 3445555666666666433 443334455555 666666666655554445555553 45555555444
No 143
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.26 E-value=1.4e-10 Score=129.90 Aligned_cols=306 Identities=12% Similarity=0.020 Sum_probs=160.9
Q ss_pred CCccccCCCCCcEEECCCCCCCCCcchhccCCCCCcEEEccCCCCCccCccccCCCCCCCEEeCCCCCCCCCCCCcccCC
Q 047927 205 VDPSLSNLRSLSVIRLDMNDLYSPVPEFLADFSNLTSLYLSSCGLHGAFPEKILQLPTLETLDLSYNELLQGSLPDFHQN 284 (1005)
Q Consensus 205 ~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~ 284 (1005)
...+|.++++|+.+++..+ +...-...|..+.+|+.+.+..+ +......+|..+..++....... .......|.++
T Consensus 86 ~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~~~~~~~~~--~~i~~~aF~~c 161 (394)
T 4fs7_A 86 GEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFKEITIPEGV--TVIGDEAFATC 161 (394)
T ss_dssp CTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCSEEECCTTC--CEECTTTTTTC
T ss_pred chhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeecccccccccCccc--cccchhhhccc
Confidence 3445666666666666543 32222345556666665555433 22233334444443333322222 22333456666
Q ss_pred CCCcEEEcccccccccCchhhccCCCCCEEeecCCccCCCCCccCCCCCCCcEEECcCCcCccCCCcccccCcccEEECC
Q 047927 285 LSLETLILSATNFSGILPDSIKNLKNLSRVEFYLCNFNGPIPTSMSDLSQLVYLDMSFNHFSGPIPSLHMFRNLAYLDLS 364 (1005)
Q Consensus 285 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~L~ 364 (1005)
.+|+.+.+..+. .......|.++.+|+.+.+..+ +.......+..+..|+.+.+..+... .........+|+.+.+.
T Consensus 162 ~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~-i~~~~~~~~~l~~i~ip 238 (394)
T 4fs7_A 162 ESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY-LGDFALSKTGVKNIIIP 238 (394)
T ss_dssp TTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE-ECTTTTTTCCCCEEEEC
T ss_pred CCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE-eehhhcccCCCceEEEC
Confidence 777777775442 3344556677777777777654 33333445666777777666554322 11222333467777665
Q ss_pred CCcCcCCCCcccccccccccEEEcCCCcCCCccCccCCCCCCCCEEeCcCcccccccccccccccccCCEEeCCCCccCC
Q 047927 365 YNIFTGGISSIGWEQLLNLFHVDLSHNNLGGSIPQSLFELPMVQHLLLADNQFDGHVTEISNASSSLLDTLDLSDNNLEG 444 (1005)
Q Consensus 365 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~ 444 (1005)
... + .+....+..+..++.+.+..+... .....+..+..++.+...... ++...+..+.+|+.+.+.++ ++.
T Consensus 239 ~~~-~-~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~----i~~~~F~~~~~L~~i~l~~~-i~~ 310 (394)
T 4fs7_A 239 DSF-T-ELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVI----VPEKTFYGCSSLTEVKLLDS-VKF 310 (394)
T ss_dssp TTC-C-EECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSE----ECTTTTTTCTTCCEEEECTT-CCE
T ss_pred CCc-e-ecccccccccccceeEEcCCCcce-eeccccccccccceeccCcee----eccccccccccccccccccc-cce
Confidence 432 1 233334667777777777665433 344456667777766665442 22333344556666666543 443
Q ss_pred CCCccccCcCCCcEEECCCCcceeccchhHHHhcCCCCeEeccCCeeeEecCCcccccCcccceEEcCCccCcCCCC-CC
Q 047927 445 PIPLSFFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYNRLAVVAGSSVYCFPPLLTTLSLASCKLSAIPN-LR 523 (1005)
Q Consensus 445 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~l~~-l~ 523 (1005)
....+|.++++|+.+++.++ ++ .+...+|.++.+|+.+.+..+ ++.++..++.. +.+|+.+++..+ ++.+.. +.
T Consensus 311 I~~~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~-C~~L~~i~lp~~-~~~~~~~F~ 385 (394)
T 4fs7_A 311 IGEEAFESCTSLVSIDLPYL-VE-EIGKRSFRGCTSLSNINFPLS-LRKIGANAFQG-CINLKKVELPKR-LEQYRYDFE 385 (394)
T ss_dssp ECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTBTT-CTTCCEEEEEGG-GGGGGGGBC
T ss_pred echhhhcCCCCCCEEEeCCc-cc-EEhHHhccCCCCCCEEEECcc-ccEehHHHhhC-CCCCCEEEECCC-CEEhhheec
Confidence 44556667777777777543 33 566666777777777777655 55555544322 233555555432 222222 44
Q ss_pred CCCceeE
Q 047927 524 KQTKLYH 530 (1005)
Q Consensus 524 ~l~~L~~ 530 (1005)
++++|+.
T Consensus 386 ~c~~L~~ 392 (394)
T 4fs7_A 386 DTTKFKW 392 (394)
T ss_dssp TTCEEEE
T ss_pred CCCCCcE
Confidence 4555544
No 144
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.23 E-value=6.2e-13 Score=146.59 Aligned_cols=88 Identities=16% Similarity=0.135 Sum_probs=55.5
Q ss_pred cccceEEECCCCeeecc----CcccccCCCCCCEEECCCCcCcc----cCchhhhcCCCCCEEeCCCCcCcccCcccccC
Q 047927 843 LNIFTSIDFSRNNFEGP----IPEEMGLLQSLCALNLSHNALTG----SIPSLIGNLREIESLDLSMNNLSGTIPAQLAS 914 (1005)
Q Consensus 843 ~~~l~~L~Ls~N~l~g~----ip~~~~~l~~L~~L~Ls~N~l~g----~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~ 914 (1005)
.+.|++|||++|.+++. +++.+...++|++|||++|.|+. .++..+...++|++|||++|.|++.-...+..
T Consensus 182 ~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~ 261 (372)
T 3un9_A 182 NTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRD 261 (372)
T ss_dssp CSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHH
T ss_pred CCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHH
Confidence 45677777777777642 35566677788888888888875 34445556688888888888887665555544
Q ss_pred CCC-----CCeEE--ccCCcccc
Q 047927 915 LNF-----LSVLN--LSYNHLVG 930 (1005)
Q Consensus 915 l~~-----L~~L~--ls~N~l~g 930 (1005)
+.. |+.+. +..|.++.
T Consensus 262 ~~~~~~~~L~~l~~ll~~~~~~~ 284 (372)
T 3un9_A 262 LGGAAEGGARVVVSLTEGTAVSE 284 (372)
T ss_dssp CC------CEEECCCC----CHH
T ss_pred HhcCCCccchhhHhhhcCCccCH
Confidence 321 55666 66666653
No 145
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.22 E-value=2.7e-10 Score=127.53 Aligned_cols=66 Identities=8% Similarity=-0.013 Sum_probs=36.3
Q ss_pred CCccCccccCCCCCCCEEeCCCCCCCCCCCCcccCCCCCcEEEcccccccccCchhhccCCCCCEEee
Q 047927 249 LHGAFPEKILQLPTLETLDLSYNELLQGSLPDFHQNLSLETLILSATNFSGILPDSIKNLKNLSRVEF 316 (1005)
Q Consensus 249 l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l 316 (1005)
++.....+|.+|.+|+.+.+..+ +...+..+|.++.+|+.+++..+ ++.+....|.++.+|+.+.+
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~ 124 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILL 124 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCC
T ss_pred EeEhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcc
Confidence 34344455667777777777643 44444455666666666666533 33333445555555555443
No 146
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.21 E-value=1.1e-12 Score=144.48 Aligned_cols=89 Identities=20% Similarity=0.299 Sum_probs=73.2
Q ss_pred cccceEEECCCCeeec----cCcccccCCCCCCEEECCCCcCccc----CchhhhcCCCCCEEeCCCCcCccc----Ccc
Q 047927 843 LNIFTSIDFSRNNFEG----PIPEEMGLLQSLCALNLSHNALTGS----IPSLIGNLREIESLDLSMNNLSGT----IPA 910 (1005)
Q Consensus 843 ~~~l~~L~Ls~N~l~g----~ip~~~~~l~~L~~L~Ls~N~l~g~----ip~~~~~l~~L~~LdLs~N~l~~~----ip~ 910 (1005)
.+.|+.|+|++|.+++ .++..+...++|++|||++|.|+.. ++..+...++|+.|||++|.|++. ++.
T Consensus 154 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~ 233 (372)
T 3un9_A 154 QCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALAR 233 (372)
T ss_dssp TCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHH
T ss_pred CCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHH
Confidence 4568889999998875 3556668899999999999999863 466778889999999999999864 455
Q ss_pred cccCCCCCCeEEccCCccccc
Q 047927 911 QLASLNFLSVLNLSYNHLVGR 931 (1005)
Q Consensus 911 ~l~~l~~L~~L~ls~N~l~g~ 931 (1005)
.+...+.|++|||++|+|+..
T Consensus 234 ~L~~~~~L~~L~Ls~N~i~~~ 254 (372)
T 3un9_A 234 AAREHPSLELLHLYFNELSSE 254 (372)
T ss_dssp HHHHCSSCCEEECTTSSCCHH
T ss_pred HHHhCCCCCEEeccCCCCCHH
Confidence 566779999999999998754
No 147
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.09 E-value=3.3e-10 Score=124.68 Aligned_cols=102 Identities=21% Similarity=0.183 Sum_probs=54.6
Q ss_pred eEEccCc-cccccCCchhhhcCcccccEEECCC-CcCCccccCccCCCCCccEEeCCCCeecccCcccccCCCCCCEEEC
Q 047927 651 VLDLSYN-YLSGMIPTCLINMSDSQLGVLNLRR-NNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDL 728 (1005)
Q Consensus 651 ~L~Ls~N-~l~~~~p~~~~~l~~~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L 728 (1005)
.++.+++ .++ .+|. +..+. +|+.|+|++ |++++..+..|.++++|++|+|++|+|++..|..|.++++|+.|+|
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~--~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 87 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAE--NLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL 87 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCS--CCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred EEEcCCCCCCC-ccCC-CCCCC--CeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeC
Confidence 3466665 555 3555 55544 555666654 5555555555555555555555555555555555555555555555
Q ss_pred CCCcCCCCcchhhhcCCCCcEEecCCCcC
Q 047927 729 GNNQFDDTFPCWVKNASRLHVLILRSNNF 757 (1005)
Q Consensus 729 s~N~l~~~~p~~~~~l~~L~~L~L~~N~l 757 (1005)
++|+|++..+..|..++ |+.|+|.+|++
T Consensus 88 ~~N~l~~~~~~~~~~~~-L~~l~l~~N~~ 115 (347)
T 2ifg_A 88 SFNALESLSWKTVQGLS-LQELVLSGNPL 115 (347)
T ss_dssp CSSCCSCCCSTTTCSCC-CCEEECCSSCC
T ss_pred CCCccceeCHHHcccCC-ceEEEeeCCCc
Confidence 55555544444443333 44444444444
No 148
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.06 E-value=3.5e-10 Score=124.53 Aligned_cols=105 Identities=22% Similarity=0.229 Sum_probs=76.0
Q ss_pred EEEecCC-cccccCChhhhccCCCCeEEccC-ccccccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCccEEeC
Q 047927 627 FFSFSKN-SLTGVIPESICNATNLLVLDLSY-NYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDL 704 (1005)
Q Consensus 627 ~L~l~~n-~l~~~~p~~l~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 704 (1005)
.++++++ .+++ +|. +..+++|+.|+|++ |++++..+..|..+. +|+.|+|++|+|++..|..|.++++|++|+|
T Consensus 12 ~v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~--~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 87 (347)
T 2ifg_A 12 GLRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLG--ELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL 87 (347)
T ss_dssp CEECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCC--CCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred EEEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhcccc--CCCEEECCCCccceeCHHHhcCCcCCCEEeC
Confidence 3566666 6664 566 77777777777775 777766667777776 7777777777777777777777777777777
Q ss_pred CCCeecccCcccccCCCCCCEEECCCCcCCCC
Q 047927 705 NGNQLEGMVPKSLANCSVLEILDLGNNQFDDT 736 (1005)
Q Consensus 705 ~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 736 (1005)
++|++++..+..|..++ |+.|+|++|++...
T Consensus 88 ~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 88 SFNALESLSWKTVQGLS-LQELVLSGNPLHCS 118 (347)
T ss_dssp CSSCCSCCCSTTTCSCC-CCEEECCSSCCCCC
T ss_pred CCCccceeCHHHcccCC-ceEEEeeCCCccCC
Confidence 77777766666666555 77777777777643
No 149
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.02 E-value=1.6e-08 Score=113.01 Aligned_cols=133 Identities=13% Similarity=0.178 Sum_probs=84.3
Q ss_pred ChhhhccCCCCeEEccCccccccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCccEEeCCCCeecccCcccccC
Q 047927 640 PESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLAN 719 (1005)
Q Consensus 640 p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~ 719 (1005)
..+|.++..|+.+.+.++..+ .....|.++. .|+.+.+. +.++.+...+|.++.+|+.++|..+ ++.+...+|.+
T Consensus 258 ~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~--~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~ 332 (394)
T 4gt6_A 258 THAFDSCAYLASVKMPDSVVS-IGTGAFMNCP--ALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAG 332 (394)
T ss_dssp TTTTTTCSSCCEEECCTTCCE-ECTTTTTTCT--TCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT
T ss_pred cceeeecccccEEecccccce-ecCccccccc--ccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhC
Confidence 345667777777777655433 4455666666 77777775 4566666677888888888888754 55566678888
Q ss_pred CCCCCEEECCCCcCCCCcchhhhcCCCCcEEecCCCcCCcccCCCCCCCCCCCccEEEccCCcc
Q 047927 720 CSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKF 783 (1005)
Q Consensus 720 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~~ 783 (1005)
|++|+.+.+..+ ++.+....|.++++|+.+++.++.... ..+.....|+.+++..|.+
T Consensus 333 C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~-----~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 333 CEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW-----NAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp CTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH-----HTCBCCCCC----------
T ss_pred CCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh-----hhhhccCCCCEEEeCCCCE
Confidence 888888888654 666667778888888888888775431 2344556677776655543
No 150
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.84 E-value=1.1e-07 Score=106.15 Aligned_cols=287 Identities=13% Similarity=0.125 Sum_probs=152.4
Q ss_pred CCccEEEccCCCCCCCCCccccCCCCCcEEECCCCC---CCCCcchhccCCCCCcEEEccCCCCCccCccccCCCCCCCE
Q 047927 189 PKLQVLSLSGCFLSGPVDPSLSNLRSLSVIRLDMND---LYSPVPEFLADFSNLTSLYLSSCGLHGAFPEKILQLPTLET 265 (1005)
Q Consensus 189 ~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~---~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 265 (1005)
..|+.+.+.. .++.....+|.++++|+.+.+..+. +...-..+|..+.+|+.+.+..+ ++......+..+.+|+.
T Consensus 64 ~~L~sI~iP~-svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~ 141 (394)
T 4gt6_A 64 YVLTSVQIPD-TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDT 141 (394)
T ss_dssp SCCCEEEECT-TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCE
T ss_pred CcCEEEEECC-CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhccccc
Confidence 3578888764 3555566778888888888876553 33333456777777877766544 44344556777888888
Q ss_pred EeCCCCCCCCCCCCcccCCCCCcEEEcccccccccCchhhccCCCCCEEeecCCccCCCCCccCCCCCCCcEEECcCCcC
Q 047927 266 LDLSYNELLQGSLPDFHQNLSLETLILSATNFSGILPDSIKNLKNLSRVEFYLCNFNGPIPTSMSDLSQLVYLDMSFNHF 345 (1005)
Q Consensus 266 L~Ls~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l 345 (1005)
+.+..+ +.......|..+..|+.+.+..+ ++.....+|.. .+|+.+.+...- .......+..+.+++.........
T Consensus 142 i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~-~~i~~~af~~c~~l~~~~~~~~~~ 217 (394)
T 4gt6_A 142 VTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKV-TRIGTNAFSECFALSTITSDSESY 217 (394)
T ss_dssp EECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTC-CEECTTTTTTCTTCCEEEECCSSS
T ss_pred ccccce-eeeecccceecccccccccccce-eeEeccccccc-cceeEEEECCcc-cccccchhhhccccceeccccccc
Confidence 888654 34445556777788888887654 33344445543 567777776532 223344566777777776655433
Q ss_pred ccCCCccc--------------ccCcccEEECCCCcCcCCCCcccccccccccEEEcCCCcCCCccCccCCCCCCCCEEe
Q 047927 346 SGPIPSLH--------------MFRNLAYLDLSYNIFTGGISSIGWEQLLNLFHVDLSHNNLGGSIPQSLFELPMVQHLL 411 (1005)
Q Consensus 346 ~~~~~~~~--------------~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 411 (1005)
........ ....+..+.+... ++ .+....|..+..|+.+.+..+... .....+.+++.|+.+.
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~-v~-~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~ 294 (394)
T 4gt6_A 218 PAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNG-VA-RIETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIE 294 (394)
T ss_dssp CBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTT-EE-EECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEE
T ss_pred ccccceeecccccccccccccccccccceEEcCCc-ce-EcccceeeecccccEEecccccce-ecCccccccccccccc
Confidence 21111100 0112233333221 11 122333566666666666544332 3334455666666666
Q ss_pred CcCcccccccccccccccccCCEEeCCCCccCCCCCccccCcCCCcEEECCCCcceeccchhHHHhcCCCCeEeccCC
Q 047927 412 LADNQFDGHVTEISNASSSLLDTLDLSDNNLEGPIPLSFFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLSYN 489 (1005)
Q Consensus 412 l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n 489 (1005)
+... +. .+....+..+.+|+.+++.++ ++.....+|.++++|+.+.+..+ ++ .+...+|.++++|+.+++.++
T Consensus 295 l~~~-i~-~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~-~I~~~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 295 FSSR-IT-ELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VT-KIPESAFSNCTALNNIEYSGS 367 (394)
T ss_dssp CCTT-CC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CC-BCCGGGGTTCTTCCEEEESSC
T ss_pred CCCc-cc-ccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cC-EEhHhHhhCCCCCCEEEECCc
Confidence 6432 11 223333334445555555432 33333444555555555555433 22 344455555555555555444
No 151
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.69 E-value=1.4e-08 Score=110.66 Aligned_cols=59 Identities=19% Similarity=0.355 Sum_probs=34.3
Q ss_pred CCCCCEEECCCCcCccc----CchhhhcCCCCCEEeCCCCcCcccCcccccC-CCCCCeEEccCCc
Q 047927 867 LQSLCALNLSHNALTGS----IPSLIGNLREIESLDLSMNNLSGTIPAQLAS-LNFLSVLNLSYNH 927 (1005)
Q Consensus 867 l~~L~~L~Ls~N~l~g~----ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~-l~~L~~L~ls~N~ 927 (1005)
+++|++||||.|.+++. ++..+..+++|+.|||++|.++...-..+.. + ...+|+++|+
T Consensus 278 ~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 278 LPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp GGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred CCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 45666666666666653 3444455667777777777766443333332 2 3456777765
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.67 E-value=2.1e-08 Score=109.14 Aligned_cols=142 Identities=14% Similarity=0.211 Sum_probs=94.4
Q ss_pred cchhhhcCCCCcEEecCCCcCCcccCCCCCCCCCCCccEEEccCCcccccCChHHHhhhhhhhhccCCchhhhchhhhee
Q 047927 737 FPCWVKNASRLHVLILRSNNFFGNISCPRYNVSWPMLQIIDLASNKFSGRLPQKWLLNLEAMMVDEGRSQSELKHLQYRF 816 (1005)
Q Consensus 737 ~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ls~N~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 816 (1005)
++.++..+++|+.|.|++|.- +..+. + .+++|+.|++..+.+.. .....+.
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~---l~l~~-~-~~~~L~~L~L~~~~l~~----~~l~~l~-------------------- 214 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNN---LSIGK-K-PRPNLKSLEIISGGLPD----SVVEDIL-------------------- 214 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBT---CBCCS-C-BCTTCSEEEEECSBCCH----HHHHHHH--------------------
T ss_pred HHHHHhcCCCCcEEEEeCCCC---ceecc-c-cCCCCcEEEEecCCCCh----HHHHHHH--------------------
Confidence 446667778888888887731 11133 2 37888888888776542 1111100
Q ss_pred cccccccccccEEEEEcchHHHHHHhcccceEEECCC--Ceeecc-----Ccccc--cCCCCCCEEECCCCcCcccCchh
Q 047927 817 LNLSQAYYQDAITVTIKGLEMKLAKILNIFTSIDFSR--NNFEGP-----IPEEM--GLLQSLCALNLSHNALTGSIPSL 887 (1005)
Q Consensus 817 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~--N~l~g~-----ip~~~--~~l~~L~~L~Ls~N~l~g~ip~~ 887 (1005)
...+++|+.|+|+. |...|. +...+ +.+++|++|+|++|.++...+..
T Consensus 215 -----------------------~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~ 271 (362)
T 2ra8_A 215 -----------------------GSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEM 271 (362)
T ss_dssp -----------------------HSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHH
T ss_pred -----------------------HccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHH
Confidence 01356778888753 221111 11222 35789999999999998766555
Q ss_pred hh---cCCCCCEEeCCCCcCccc----CcccccCCCCCCeEEccCCcccc
Q 047927 888 IG---NLREIESLDLSMNNLSGT----IPAQLASLNFLSVLNLSYNHLVG 930 (1005)
Q Consensus 888 ~~---~l~~L~~LdLs~N~l~~~----ip~~l~~l~~L~~L~ls~N~l~g 930 (1005)
+. .+++|+.|||+.|.+++. ++..+..++.|+.|++++|.++.
T Consensus 272 la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 272 FLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp HHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred HHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence 54 578999999999999875 45555678999999999998864
No 153
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.57 E-value=3.1e-06 Score=93.95 Aligned_cols=284 Identities=12% Similarity=0.090 Sum_probs=128.2
Q ss_pred CCccEEEccCCCCCCCCCccccCCCCCcEEECCCCCCCCCcchhccCCCCCcEEEccCCCCCccCccccCCCCCCCEEeC
Q 047927 189 PKLQVLSLSGCFLSGPVDPSLSNLRSLSVIRLDMNDLYSPVPEFLADFSNLTSLYLSSCGLHGAFPEKILQLPTLETLDL 268 (1005)
Q Consensus 189 ~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 268 (1005)
.+|+.+.+.. .++.....+|.++.+|+.+.+..+ +...-..+|.++ +|+.+.+..+ ++.....++.. .+|+.+.+
T Consensus 46 ~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~-~~L~~i~l 120 (379)
T 4h09_A 46 DRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQG-TDLDDFEF 120 (379)
T ss_dssp GGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTT-CCCSEEEC
T ss_pred cCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceecc-CCcccccC
Confidence 3444444432 233334456777777777777543 333333456655 5666665433 33222233333 36777777
Q ss_pred CCCCCCCCCCCcccCCCCCcEEEcccccccccCchhhccCCCCCEEeecCCccCC------------CCCccCCCCCCCc
Q 047927 269 SYNELLQGSLPDFHQNLSLETLILSATNFSGILPDSIKNLKNLSRVEFYLCNFNG------------PIPTSMSDLSQLV 336 (1005)
Q Consensus 269 s~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~------------~~~~~l~~l~~L~ 336 (1005)
..+ +.......|... +++...+..+ ++......+..+..++.+.+....... .....+.....+.
T Consensus 121 p~~-~~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (379)
T 4h09_A 121 PGA-TTEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGT 197 (379)
T ss_dssp CTT-CCEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCS
T ss_pred CCc-cccccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceecccccccccc
Confidence 654 222233333333 3444444332 233334455666666666554432210 1111233334444
Q ss_pred EEECcCCcCccCCCcccccCcccEEECCCCcCcCCCCcccccccccccEEEcCCCcCCCccCccCCCCCCCCEEeCcCcc
Q 047927 337 YLDMSFNHFSGPIPSLHMFRNLAYLDLSYNIFTGGISSIGWEQLLNLFHVDLSHNNLGGSIPQSLFELPMVQHLLLADNQ 416 (1005)
Q Consensus 337 ~L~L~~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 416 (1005)
.+.+...........+....+|+.+.+..+- . .+....+..+..|+.+.+..+ ++..-...+.++..|+.+.+..+
T Consensus 198 ~~~~~~~~~~i~~~~f~~~~~l~~i~~~~~~-~-~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~- 273 (379)
T 4h09_A 198 EFTIPSTVKTVTAYGFSYGKNLKKITITSGV-T-TLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK- 273 (379)
T ss_dssp EEECCTTCCEECTTTTTTCSSCSEEECCTTC-C-EECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-
T ss_pred ccccccceeEEeecccccccccceeeeccce-e-EEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-
Confidence 4444332221111222233355555554331 1 233333555666666666544 33223344555556666655432
Q ss_pred cccccccccccccccCCEEeCCCCccCCCCCccccCcCCCcEEECCCCcceeccchhHHHhcCCCCeEecc
Q 047927 417 FDGHVTEISNASSSLLDTLDLSDNNLEGPIPLSFFELKNLKILLLSSNKFVGTIELDAIQRLRNLFRLDLS 487 (1005)
Q Consensus 417 l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~ 487 (1005)
+ ..+....+..+.+|+.+.+.++.++......|.++.+|+.+.+..+ ++ .+...+|.++.+|+.+.+.
T Consensus 274 i-~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 274 V-KTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LK-TIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp C-SEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCCCCCC
T ss_pred c-eeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-cc-EEHHHHhhCCCCCCEEEEC
Confidence 1 1122223333444555555544444444445555555555555433 22 3444455555555555543
No 154
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.54 E-value=7.1e-06 Score=91.03 Aligned_cols=87 Identities=15% Similarity=0.161 Sum_probs=44.3
Q ss_pred ChhhhccCCCCeEEccCccccccCCchhhhcCcccccEEECCCCcCCccccCccCCCCCccEEeCCCCeecccCcccccC
Q 047927 640 PESICNATNLLVLDLSYNYLSGMIPTCLINMSDSQLGVLNLRRNNLNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLAN 719 (1005)
Q Consensus 640 p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~ 719 (1005)
...|.++.+|+.+.+..+ +.......|.++. +|+.+.+.++.++.+...+|.++.+|+.+.|..+ ++.+...+|.+
T Consensus 256 ~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~--~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~ 331 (379)
T 4h09_A 256 SFLLQNCTALKTLNFYAK-VKTVPYLLCSGCS--NLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKN 331 (379)
T ss_dssp TTTTTTCTTCCEEEECCC-CSEECTTTTTTCT--TCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT
T ss_pred ccccceeehhcccccccc-ceecccccccccc--ccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhC
Confidence 344555555555555433 3323333444444 5555555555555555555555555555555433 44344455555
Q ss_pred CCCCCEEECCC
Q 047927 720 CSVLEILDLGN 730 (1005)
Q Consensus 720 l~~L~~L~Ls~ 730 (1005)
|++|+.+.+..
T Consensus 332 C~~L~~i~ip~ 342 (379)
T 4h09_A 332 CKALSTISYPK 342 (379)
T ss_dssp CTTCCCCCCCT
T ss_pred CCCCCEEEECC
Confidence 55555555543
No 155
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.40 E-value=9.4e-08 Score=98.28 Aligned_cols=84 Identities=26% Similarity=0.298 Sum_probs=60.5
Q ss_pred EECCCCe---eeccCcccccCCCCCCEEECCCCcCcc--cCchhhhcCCCCCEEeCCCCcCcccCcccccCCC--CCCeE
Q 047927 849 IDFSRNN---FEGPIPEEMGLLQSLCALNLSHNALTG--SIPSLIGNLREIESLDLSMNNLSGTIPAQLASLN--FLSVL 921 (1005)
Q Consensus 849 L~Ls~N~---l~g~ip~~~~~l~~L~~L~Ls~N~l~g--~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~--~L~~L 921 (1005)
++++.|+ +.+.++....++++|+.|+||+|+|++ .+|..++.+++|+.|||++|+|++. ..+..+. .|++|
T Consensus 148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L 225 (267)
T 3rw6_A 148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEEL 225 (267)
T ss_dssp CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEE
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceE
Confidence 5666773 333333333567888888888888887 5667778888888888888888875 3344444 88888
Q ss_pred EccCCcccccCCC
Q 047927 922 NLSYNHLVGRIPT 934 (1005)
Q Consensus 922 ~ls~N~l~g~ip~ 934 (1005)
+|++|++++.+|.
T Consensus 226 ~L~~Npl~~~~~~ 238 (267)
T 3rw6_A 226 WLDGNSLCDTFRD 238 (267)
T ss_dssp ECTTSTTGGGCSS
T ss_pred EccCCcCccccCc
Confidence 8888888887774
No 156
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.36 E-value=2.5e-07 Score=95.10 Aligned_cols=80 Identities=23% Similarity=0.236 Sum_probs=68.8
Q ss_pred HhcccceEEECCCCeeec--cCcccccCCCCCCEEECCCCcCcccCchhhhcCC--CCCEEeCCCCcCcccCcc------
Q 047927 841 KILNIFTSIDFSRNNFEG--PIPEEMGLLQSLCALNLSHNALTGSIPSLIGNLR--EIESLDLSMNNLSGTIPA------ 910 (1005)
Q Consensus 841 ~~~~~l~~L~Ls~N~l~g--~ip~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~--~L~~LdLs~N~l~~~ip~------ 910 (1005)
..++.|+.|+||+|+|++ .+|..++.+++|+.|||++|+|++. ..+..++ +|+.|+|++|.+++.+|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 467899999999999998 6678888999999999999999975 4466666 999999999999988773
Q ss_pred -cccCCCCCCeEE
Q 047927 911 -QLASLNFLSVLN 922 (1005)
Q Consensus 911 -~l~~l~~L~~L~ 922 (1005)
.+..+++|+.||
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 467888888886
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.34 E-value=8.7e-08 Score=93.99 Aligned_cols=122 Identities=11% Similarity=0.015 Sum_probs=57.0
Q ss_pred ccccccccceeecCCc-cCCCC---CCCCcccCCCCCcEEEcccCCCcCC----CcccccCCCCCcEEeCCCcccccCcc
Q 047927 75 SLFSLKYLQSLNLAFN-MFNAT---EIPSGLGNLTNLTTLNLSNAGFAGQ----IPIQVSGMTRLVTLDLSGMYFVRAPL 146 (1005)
Q Consensus 75 ~l~~l~~L~~L~Ls~~-~~~~~---~lp~~l~~l~~L~~L~Ls~n~~~~~----lp~~l~~l~~L~~L~ls~n~~~~~~~ 146 (1005)
.+...+.|++|+|++| .+... .+.+.+...++|++|+|++|.+.+. +...+...+.|++|++++|.+.....
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 3444556666666665 55331 1223344455666666666655432 22233344555556655555433211
Q ss_pred ccCCCChhhhhhcCccCceeec--CCccCCCchhhHHHHHhccCCCccEEEccCCC
Q 047927 147 KLENPNLSGLLQNLAELRELYL--DGVNISAPGIEWCQALSSLVPKLQVLSLSGCF 200 (1005)
Q Consensus 147 ~~~~~~~~~~l~~l~~L~~L~l--~~~~~~~~~~~~~~~l~~l~~~L~~L~L~~n~ 200 (1005)
..+...+...++|++|++ ++|.+++.+...+.......++|++|++++|.
T Consensus 111 ----~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 111 ----LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp ----HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred ----HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 112333444555555555 45555544444433332222444444444443
No 158
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.25 E-value=3.4e-07 Score=89.71 Aligned_cols=15 Identities=13% Similarity=0.233 Sum_probs=7.7
Q ss_pred ccCCCCCcEEeCCCc
Q 047927 125 VSGMTRLVTLDLSGM 139 (1005)
Q Consensus 125 l~~l~~L~~L~ls~n 139 (1005)
+...+.|++|++++|
T Consensus 32 l~~~~~L~~L~L~~n 46 (185)
T 1io0_A 32 QNNDPDLEEVNLNNI 46 (185)
T ss_dssp HTTCTTCCEEECTTC
T ss_pred HhcCCCCCEEEecCC
Confidence 344555555555554
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.78 E-value=8.1e-06 Score=77.40 Aligned_cols=84 Identities=11% Similarity=0.072 Sum_probs=44.5
Q ss_pred CCCcEEEccCCCCCccCccccCCCCCCCEEeCCCCC-CCCCCCCcccCC----CCCcEEEccccc-ccccCchhhccCCC
Q 047927 237 SNLTSLYLSSCGLHGAFPEKILQLPTLETLDLSYNE-LLQGSLPDFHQN----LSLETLILSATN-FSGILPDSIKNLKN 310 (1005)
Q Consensus 237 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~-~~~~~~~~~~~~----~~L~~L~L~~n~-l~~~~p~~l~~l~~ 310 (1005)
.+|++|++++|.+++..-..+..+++|++|+|++|. +++..+..+..+ ++|++|+|++|. ++...-..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 356677777766665555556666666666666664 333233333332 245555555543 44333334445555
Q ss_pred CCEEeecCCc
Q 047927 311 LSRVEFYLCN 320 (1005)
Q Consensus 311 L~~L~l~~n~ 320 (1005)
|++|++++|.
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 5555555553
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.72 E-value=7.2e-06 Score=77.77 Aligned_cols=36 Identities=6% Similarity=0.082 Sum_probs=24.8
Q ss_pred CCCcEEEcccCCCcCCCcccccCCCCCcEEeCCCcc
Q 047927 105 TNLTTLNLSNAGFAGQIPIQVSGMTRLVTLDLSGMY 140 (1005)
Q Consensus 105 ~~L~~L~Ls~n~~~~~lp~~l~~l~~L~~L~ls~n~ 140 (1005)
.+|++||+++|.++..--..+.++++|++|+|++|.
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~ 96 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCH 96 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCC
Confidence 567777777777665544556677777777777764
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.01 E-value=0.00036 Score=67.48 Aligned_cols=46 Identities=15% Similarity=0.225 Sum_probs=21.2
Q ss_pred hhcCccCceeecCCc-cCCCchhhHHHHHhccCCCccEEEccCCCCC
Q 047927 157 LQNLAELRELYLDGV-NISAPGIEWCQALSSLVPKLQVLSLSGCFLS 202 (1005)
Q Consensus 157 l~~l~~L~~L~l~~~-~~~~~~~~~~~~l~~l~~~L~~L~L~~n~~~ 202 (1005)
+.+-+.|++|+++++ .+.+.+...+......-..|+.|+|++|.+.
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~ig 83 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAIS 83 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCB
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCC
Confidence 344455555555553 4544444433333222245555555555544
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.01 E-value=0.00083 Score=60.70 Aligned_cols=58 Identities=26% Similarity=0.296 Sum_probs=41.3
Q ss_pred EEECCCCcCc-ccCchhhhcCCCCCEEeCCCCcCcccCcccccCCCCCCeEEccCCccccc
Q 047927 872 ALNLSHNALT-GSIPSLIGNLREIESLDLSMNNLSGTIPAQLASLNFLSVLNLSYNHLVGR 931 (1005)
Q Consensus 872 ~L~Ls~N~l~-g~ip~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ 931 (1005)
.+|.++++++ ..+|..+. ++|+.|||++|+|+...+..|..+++|++|+|++|++.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~Cd 70 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCD 70 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCS
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeecc
Confidence 5667777765 34554332 3577888888888876667778888888888888888764
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.93 E-value=0.00056 Score=66.12 Aligned_cols=91 Identities=11% Similarity=0.134 Sum_probs=47.4
Q ss_pred CCCCcEEEcccC-CCcCC----CcccccCCCCCcEEeCCCcccccCccccCCCChhhhhhcCccCceeecCCccCCCchh
Q 047927 104 LTNLTTLNLSNA-GFAGQ----IPIQVSGMTRLVTLDLSGMYFVRAPLKLENPNLSGLLQNLAELRELYLDGVNISAPGI 178 (1005)
Q Consensus 104 l~~L~~L~Ls~n-~~~~~----lp~~l~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 178 (1005)
-+.|++|+|+++ .+... +-..+..-+.|++|+|++|.+.+.. ...+...+..-+.|++|+|++|.|++.+.
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~g----a~alA~aL~~N~tL~~L~L~~N~Ig~~Ga 115 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSE----ARGLIELIETSPSLRVLNVESNFLTPELL 115 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHH----HTTHHHHHHHCSSCCEEECCSSBCCHHHH
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHH----HHHHHHHHhcCCccCeEecCCCcCCHHHH
Confidence 345555555553 43221 2233444455666666666554322 22345556666667777777777666665
Q ss_pred hHHHHHhccCCCccEEEccC
Q 047927 179 EWCQALSSLVPKLQVLSLSG 198 (1005)
Q Consensus 179 ~~~~~l~~l~~~L~~L~L~~ 198 (1005)
..+.........|++|+|++
T Consensus 116 ~ala~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 116 ARLLRSTLVTQSIVEFKADN 135 (197)
T ss_dssp HHHHHHTTTTCCCSEEECCC
T ss_pred HHHHHHHhhCCceeEEECCC
Confidence 55544433334455555553
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.20 E-value=0.0076 Score=54.31 Aligned_cols=37 Identities=30% Similarity=0.434 Sum_probs=17.7
Q ss_pred CccEEeCCCCeecccCcccccCCCCCCEEECCCCcCC
Q 047927 698 SLRTLDLNGNQLEGMVPKSLANCSVLEILDLGNNQFD 734 (1005)
Q Consensus 698 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 734 (1005)
+|++|+|++|+|+.+.+..|..+++|+.|+|++|++.
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 3444455555544444444444445555555555443
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=45.46 E-value=20 Score=29.83 Aligned_cols=45 Identities=22% Similarity=0.366 Sum_probs=22.4
Q ss_pred CCccccCccCCCCCccEEeCCCCeecccCcccccCCCCCCEEECCC
Q 047927 685 LNGTVSATFPANCSLRTLDLNGNQLEGMVPKSLANCSVLEILDLGN 730 (1005)
Q Consensus 685 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~ 730 (1005)
++.+...+|.++++|+.+.|-.+ ++.+-..+|.+|++|+.+.+..
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 34444455555555555555543 3334444555555555555543
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=40.78 E-value=24 Score=29.31 Aligned_cols=50 Identities=20% Similarity=0.300 Sum_probs=40.1
Q ss_pred CCeecccCcccccCCCCCCEEECCCCcCCCCcchhhhcCCCCcEEecCCCc
Q 047927 706 GNQLEGMVPKSLANCSVLEILDLGNNQFDDTFPCWVKNASRLHVLILRSNN 756 (1005)
Q Consensus 706 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~ 756 (1005)
+..++.+-..+|.+|++|+.+.|-.+ ++.+-...|.++.+|+.+.+.+..
T Consensus 5 g~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~~ 54 (100)
T 2lz0_A 5 GEPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGED 54 (100)
T ss_dssp CCCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCSC
T ss_pred CCccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCCC
Confidence 44566677789999999999999875 566677889999999999887753
No 167
>2llm_A Amyloid beta A4 protein; alzheimer'S disease, protein fibril; NMR {Homo sapiens} PDB: 2loh_A
Probab=21.08 E-value=30 Score=23.20 Aligned_cols=21 Identities=24% Similarity=0.349 Sum_probs=14.0
Q ss_pred ehhHHHHHHHHHhheeeeecC
Q 047927 985 MAIGFAVGFGSVVAPLMFSRK 1005 (1005)
Q Consensus 985 ~~~~~~~~~~~~~~~~~~~~~ 1005 (1005)
+.+|.+++.++++++++++||
T Consensus 23 ~v~gVai~~vIVvsl~mlRrr 43 (43)
T 2llm_A 23 MVGGVVIATVIVITLVMLKKK 43 (43)
Confidence 345555566777777888876
Done!