BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047929
(790 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 123 bits (309), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 155/533 (29%), Positives = 224/533 (42%), Gaps = 94/533 (17%)
Query: 196 SSLNALDLSGN-LFGKTSIPSWVFGLSDLVFLDLSSNI--FRGPIPDGFKNLTSLRYLDL 252
+SL +LDLS N L G + + + S L FL++SSN F G + G K L SL LDL
Sbjct: 100 ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLK-LNSLEVLDL 158
Query: 253 SYNQFNST------ISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNEL 306
S N + +SD +L++L++ N++ G + NL F LD+S N
Sbjct: 159 SANSISGANVVGWVLSD---GCGELKHLAISGNKISGDVDVSRCVNLEF---LDVSSNNF 212
Query: 307 GQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVSGPLPPA 366
I + D C+A L+ L + G K+SG + + L L +S N GP+PP
Sbjct: 213 STGIPFLGD----CSA--LQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL 266
Query: 367 SGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNFKINSKWVPPF-----Q 421
L SL YL L+ N G I + G L +GN VPPF
Sbjct: 267 --PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHF-----YGAVPPFFGSCSL 319
Query: 422 LLALRLRSCHLGPHFP-SWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNW 480
L +L L S + P L + L LD+S S +P N
Sbjct: 320 LESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSAS---------- 369
Query: 481 PDLRVLNLGNNKFTGSI--PISMGXXXXXXXXXXXXXXXXGIIPVPFENCSQLVALDMGE 538
L L+L +N F+G I + G IP NCS+LV+L +
Sbjct: 370 --LLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSF 427
Query: 539 NEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCI 598
N G IP+ +G S+LR L L N L G P ++ ++ +L+ L + +N L+G +P +
Sbjct: 428 NYLSGTIPSSLGS-LSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGL 486
Query: 599 NNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNF 658
+N T + I +S N
Sbjct: 487 SNCTNL--------------------------------------------NWISLSNNRL 502
Query: 659 SGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIP 711
+GEIP + L+ L L LS+NSF G IP +G+ RS+ LDL+ N +G IP
Sbjct: 503 TGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP 555
Score = 116 bits (290), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 149/558 (26%), Positives = 240/558 (43%), Gaps = 74/558 (13%)
Query: 51 ELNLERSELGGKINPAXXXXXXXXXXXXSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAG 110
L++ ++L G + A S N F G IP + +L+YL+L+ F G
Sbjct: 227 HLDISGNKLSGDFSRAISTCTELKLLNISSNQFVG-PIPPL--PLKSLQYLSLAENKFTG 283
Query: 111 WIPHQL-GNLSNLMHLDLSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDW--LLV 167
IP L G L LDLSG+++ + A P + + ++++ L
Sbjct: 284 EIPDFLSGACDTLTGLDLSGNHF--------YGAVPPFFGSCSLLESLALSSNNFSGELP 335
Query: 168 INSLPSLKVLKLFSCKLHHFA---PLASANFS-SLNALDLSGNLFGKTSIPSWVFGLSD- 222
+++L ++ LK+ + F+ P + N S SL LDLS N F +P+ +
Sbjct: 336 MDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNT 395
Query: 223 LVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQ 282
L L L +N F G IP N + L L LS+N + TI + L L L N L+
Sbjct: 396 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE 455
Query: 283 GTISSIGLENLTFIKTLD---LSFNELGQDISEILDIISACAAFELESLFLRGCKISGQL 339
G I + L ++KTL+ L FN+L EI +S C L + L +++G++
Sbjct: 456 GEIP----QELMYVKTLETLILDFNDL---TGEIPSGLSNCT--NLNWISLSNNRLTGEI 506
Query: 340 TNQLGLFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELA 399
+G +NL L LS+NS SG +P G+ SL +LDL+ N NG I F ++A
Sbjct: 507 PKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIA 566
Query: 400 FFYANGNSVNFKINSKWVPPFQLLALRLRSCHLGPHFPSWLH-SQKHLSKLDISNTRISD 458
+ G + N + CH + + + L++L N
Sbjct: 567 ANFIAGKRYVYIKNDGMK----------KECHGAGNLLEFQGIRSEQLNRLSTRN----- 611
Query: 459 IIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGXXXXXXXXXXXXXXXX 518
P + +Y + N + L++ N +G IP +G
Sbjct: 612 --PCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGS--------------- 654
Query: 519 GIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLS 578
+P+ L L++G N+ G+IP +G+ L IL+L SNKL G P + L+
Sbjct: 655 ----MPY-----LFILNLGHNDISGSIPDEVGD-LRGLNILDLSSNKLDGRIPQAMSALT 704
Query: 579 SLQILDVAYNRLSGSVPK 596
L +D++ N LSG +P+
Sbjct: 705 MLTEIDLSNNNLSGPIPE 722
Score = 100 bits (250), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 147/541 (27%), Positives = 225/541 (41%), Gaps = 62/541 (11%)
Query: 97 NLRYLNLSGAGFAGWIPHQLGNLSNLMHLDLSGSYYELRVEDISWLAGPSLLEHLDTSDV 156
NL +L++S F+ IP LG+ S L HLD+SG+ +L + ++ + L+ L+
Sbjct: 201 NLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGN--KLSGDFSRAISTCTELKLLN---- 253
Query: 157 DLIKASDWLLVINSLP--SLKVLKLFSCKLHHFAP-LASANFSSLNALDLSGNLFGKTSI 213
I ++ ++ I LP SL+ L L K P S +L LDLSGN F
Sbjct: 254 --ISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVP 311
Query: 214 PSW------------------------VFGLSDLVFLDLSSNIFRGPIPDGFKNLT-SLR 248
P + + + L LDLS N F G +P+ NL+ SL
Sbjct: 312 PFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLL 371
Query: 249 YLDLSYNQFNSTI--SDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNEL 306
LDLS N F+ I + C + + L+ L L N G I L N + + +L LSFN L
Sbjct: 372 TLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPT-LSNCSELVSLHLSFNYL 430
Query: 307 GQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVSGPLPPA 366
I L +S +L L L + G++ +L K L TL L N ++G +P
Sbjct: 431 SGTIPSSLGSLS-----KLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSG 485
Query: 367 SGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNFKINSKWVPPFQLLALR 426
++L ++ LSNN L G I + G L LA + NS + I ++ L+ L
Sbjct: 486 LSNCTNLNWISLSNNRLTGEIPK-WIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLD 544
Query: 427 LRSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVL 486
L + P+ + Q S ++ I + I D + +L
Sbjct: 545 LNTNLFNGTIPAAMFKQ--------SGKIAANFIAGKRYVYIKNDGMKKECHGAGNLL-- 594
Query: 487 NLGNNKFTGSIPISMGXXXXXXXXXXXXXXXXGIIPVPFENCSQLVALDMGENEFVGNIP 546
+F G + G F+N ++ LDM N G IP
Sbjct: 595 -----EFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIP 649
Query: 547 TWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCINNFTAMAT 606
+G L ILNL N + G P ++ L L ILD++ N+L G +P+ ++ T +
Sbjct: 650 KEIGS-MPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTE 708
Query: 607 I 607
I
Sbjct: 709 I 709
Score = 94.7 bits (234), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 121/478 (25%), Positives = 201/478 (42%), Gaps = 69/478 (14%)
Query: 240 GFKNLTSLRYLDLSYNQFNSTISDCFS--NFDDLEYLSLGYNRLQGTISSIGLENLTFIK 297
GFK SL LDLS N + ++ S + L++L++ N L G L ++
Sbjct: 95 GFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLE 154
Query: 298 TLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSDN 357
LDLS N + + ++ + + EL+ L + G KISG + + NL L +S N
Sbjct: 155 VLDLSANSISG--ANVVGWVLSDGCGELKHLAISGNKISGDV--DVSRCVNLEFLDVSSN 210
Query: 358 SVSGPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNFKINSKWV 417
+ S +P G+ S+L +LD+S N L+G S TEL + N ++V
Sbjct: 211 NFSTGIP-FLGDCSALQHLDISGNKLSGDFSRA-ISTCTELKLLNISSN--------QFV 260
Query: 418 PPFQLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCW 477
P L L K L L ++ + + IP + + DT
Sbjct: 261 GPIPPLPL------------------KSLQYLSLAENKFTGEIPDFLSGAC--DT----- 295
Query: 478 MNWPDLRVLNLGNNKFTGSIPISMGXXXXXXXXXXXXXXXXGIIPV-PFENCSQLVALDM 536
L L+L N F G++P G G +P+ L LD+
Sbjct: 296 -----LTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDL 350
Query: 537 GENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICH--LSSLQILDVAYNRLSGSV 594
NEF G +P + + L L+L SN G +C ++LQ L + N +G +
Sbjct: 351 SFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKI 410
Query: 595 PKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDIS 654
P ++N + + ++ H SF + G + L+ +R + +
Sbjct: 411 PPTLSNCSELVSL----------HLSFN----------YLSGTIPSSLGSLSKLRDLKLW 450
Query: 655 MNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQ 712
+N GEIP E+ +K L++L L N G+IP + N ++ + LS N+++G+IP+
Sbjct: 451 LNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPK 508
Score = 79.0 bits (193), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 107/367 (29%), Positives = 155/367 (42%), Gaps = 74/367 (20%)
Query: 79 SGNDFQGIQIPEYIGSMDN-LRYLNLSGAGFAGWIPHQLGNLSNLMHLDLSGSYYELRVE 137
S N+F G +P + N L+ L L GF G IP L N S L+ L LS +Y +
Sbjct: 376 SSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTI- 434
Query: 138 DISWLAGPSLLEHLDT-SDVDLIKASDWLLVINS--------LPSLKVLKLFSCKLHHFA 188
PS L L D+ L WL ++ + +L+ L L L
Sbjct: 435 -------PSSLGSLSKLRDLKL-----WLNMLEGEIPQELMYVKTLETLILDFNDLTGEI 482
Query: 189 PLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLR 248
P +N ++LN + LS N IP W+ L +L L LS+N F G IP + SL
Sbjct: 483 PSGLSNCTNLNWISLSNNRL-TGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLI 541
Query: 249 YLDLSYNQFNSTI------------------------------SDCFSNFDDLEYLSLG- 277
+LDL+ N FN TI +C + LE+ +
Sbjct: 542 WLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRS 601
Query: 278 --------------YNRLQGTISSIGLENLTFIKTLDLSFNELGQDISEILDIISACAAF 323
+R+ G +S +N + LD+S+N L I + +I S F
Sbjct: 602 EQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPK--EIGSMPYLF 659
Query: 324 ELESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNL 383
L L ISG + +++G + L+ L LS N + G +P A L+ LT +DLSNNNL
Sbjct: 660 ILN---LGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNL 716
Query: 384 NGMISEI 390
+G I E+
Sbjct: 717 SGPIPEM 723
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 123 bits (309), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 155/533 (29%), Positives = 224/533 (42%), Gaps = 94/533 (17%)
Query: 196 SSLNALDLSGN-LFGKTSIPSWVFGLSDLVFLDLSSNI--FRGPIPDGFKNLTSLRYLDL 252
+SL +LDLS N L G + + + S L FL++SSN F G + G K L SL LDL
Sbjct: 97 ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLK-LNSLEVLDL 155
Query: 253 SYNQFNST------ISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNEL 306
S N + +SD +L++L++ N++ G + NL F LD+S N
Sbjct: 156 SANSISGANVVGWVLSD---GCGELKHLAISGNKISGDVDVSRCVNLEF---LDVSSNNF 209
Query: 307 GQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVSGPLPPA 366
I + D C+A L+ L + G K+SG + + L L +S N GP+PP
Sbjct: 210 STGIPFLGD----CSA--LQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL 263
Query: 367 SGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNFKINSKWVPPF-----Q 421
L SL YL L+ N G I + G L +GN VPPF
Sbjct: 264 --PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHF-----YGAVPPFFGSCSL 316
Query: 422 LLALRLRSCHLGPHFP-SWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNW 480
L +L L S + P L + L LD+S S +P N
Sbjct: 317 LESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSAS---------- 366
Query: 481 PDLRVLNLGNNKFTGSI--PISMGXXXXXXXXXXXXXXXXGIIPVPFENCSQLVALDMGE 538
L L+L +N F+G I + G IP NCS+LV+L +
Sbjct: 367 --LLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSF 424
Query: 539 NEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCI 598
N G IP+ +G S+LR L L N L G P ++ ++ +L+ L + +N L+G +P +
Sbjct: 425 NYLSGTIPSSLGS-LSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGL 483
Query: 599 NNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNF 658
+N T + I +S N
Sbjct: 484 SNCTNL--------------------------------------------NWISLSNNRL 499
Query: 659 SGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIP 711
+GEIP + L+ L L LS+NSF G IP +G+ RS+ LDL+ N +G IP
Sbjct: 500 TGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP 552
Score = 120 bits (302), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 178/690 (25%), Positives = 263/690 (38%), Gaps = 109/690 (15%)
Query: 148 LEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLASA-NFSSLNALDLSGN 206
L LD S L L + S LK L + S L ++ +SL LDLS N
Sbjct: 99 LTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSAN 158
Query: 207 LFGKTSIPSWVFGLSD--------------------------LVFLDLSSNIFRGPIPDG 240
++ WV LSD L FLD+SSN F IP
Sbjct: 159 SISGANVVGWV--LSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIP-F 215
Query: 241 FKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLD 300
+ ++L++LD+S N+ + S S +L+ L++ N+ G I + L++L ++ +
Sbjct: 216 LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAE 275
Query: 301 LSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVS 360
F EI D +S A L L L G G + G L +LALS N+ S
Sbjct: 276 NKF------TGEIPDFLSG-ACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFS 328
Query: 361 GPLPPASG-ELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNFKINSKWVPP 419
G LP + ++ L LDLS N +G + E +LT L+
Sbjct: 329 GELPMDTLLKMRGLKVLDLSFNEFSGELPE----SLTNLSA------------------- 365
Query: 420 FQLLALRLRSCHL-GPHFPSWLHSQKH-LSKLDISNTRISDIIPRWFWN----------- 466
LL L L S + GP P+ + K+ L +L + N + IP N
Sbjct: 366 -SLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSF 424
Query: 467 SIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGXXXXXXXXXXXXXXXXGIIPVPFE 526
+ TIP + LR L L N G IP + G IP
Sbjct: 425 NYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS 484
Query: 527 NCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVA 586
NC+ L + + N G IP W+G R L IL L +N G P ++ SL LD+
Sbjct: 485 NCTNLNWISLSNNRLTGEIPKWIG-RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLN 543
Query: 587 YNRLSGSVPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEIS-----LVMKGFMVEY 641
N +G++P + F I ++ + + +ND + +E L +G E
Sbjct: 544 TNLFNGTIPAAM--FKQSGKIAANF-IAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQ 600
Query: 642 NSILNLVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDL 701
+ L+ +I+ + G N + L++S+N G IP+ IG+M + L+L
Sbjct: 601 LNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNL 660
Query: 702 SGNQIS------------------------GKIPQXXXXXXXXXXXXXXXXKLVGKIPSS 737
N IS G+IPQ L G IP
Sbjct: 661 GHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 720
Query: 738 TQLQSFGASSITGND-LCGAPLSNCTEKNV 766
Q ++F + N LCG PL C N
Sbjct: 721 GQFETFPPAKFLNNPGLCGYPLPRCDPSNA 750
Score = 116 bits (290), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 149/558 (26%), Positives = 240/558 (43%), Gaps = 74/558 (13%)
Query: 51 ELNLERSELGGKINPAXXXXXXXXXXXXSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAG 110
L++ ++L G + A S N F G IP + +L+YL+L+ F G
Sbjct: 224 HLDISGNKLSGDFSRAISTCTELKLLNISSNQFVG-PIPPL--PLKSLQYLSLAENKFTG 280
Query: 111 WIPHQL-GNLSNLMHLDLSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDW--LLV 167
IP L G L LDLSG+++ + A P + + ++++ L
Sbjct: 281 EIPDFLSGACDTLTGLDLSGNHF--------YGAVPPFFGSCSLLESLALSSNNFSGELP 332
Query: 168 INSLPSLKVLKLFSCKLHHFA---PLASANFS-SLNALDLSGNLFGKTSIPSWVFGLSD- 222
+++L ++ LK+ + F+ P + N S SL LDLS N F +P+ +
Sbjct: 333 MDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNT 392
Query: 223 LVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQ 282
L L L +N F G IP N + L L LS+N + TI + L L L N L+
Sbjct: 393 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE 452
Query: 283 GTISSIGLENLTFIKTLD---LSFNELGQDISEILDIISACAAFELESLFLRGCKISGQL 339
G I + L ++KTL+ L FN+L EI +S C L + L +++G++
Sbjct: 453 GEIP----QELMYVKTLETLILDFNDL---TGEIPSGLSNCT--NLNWISLSNNRLTGEI 503
Query: 340 TNQLGLFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELA 399
+G +NL L LS+NS SG +P G+ SL +LDL+ N NG I F ++A
Sbjct: 504 PKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIA 563
Query: 400 FFYANGNSVNFKINSKWVPPFQLLALRLRSCHLGPHFPSWLH-SQKHLSKLDISNTRISD 458
+ G + N + CH + + + L++L N
Sbjct: 564 ANFIAGKRYVYIKNDGMK----------KECHGAGNLLEFQGIRSEQLNRLSTRN----- 608
Query: 459 IIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGXXXXXXXXXXXXXXXX 518
P + +Y + N + L++ N +G IP +G
Sbjct: 609 --PCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGS--------------- 651
Query: 519 GIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLS 578
+P+ L L++G N+ G+IP +G+ L IL+L SNKL G P + L+
Sbjct: 652 ----MPY-----LFILNLGHNDISGSIPDEVGD-LRGLNILDLSSNKLDGRIPQAMSALT 701
Query: 579 SLQILDVAYNRLSGSVPK 596
L +D++ N LSG +P+
Sbjct: 702 MLTEIDLSNNNLSGPIPE 719
Score = 94.7 bits (234), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 121/478 (25%), Positives = 201/478 (42%), Gaps = 69/478 (14%)
Query: 240 GFKNLTSLRYLDLSYNQFNSTISDCFS--NFDDLEYLSLGYNRLQGTISSIGLENLTFIK 297
GFK SL LDLS N + ++ S + L++L++ N L G L ++
Sbjct: 92 GFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLE 151
Query: 298 TLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSDN 357
LDLS N + + ++ + + EL+ L + G KISG + + NL L +S N
Sbjct: 152 VLDLSANSISG--ANVVGWVLSDGCGELKHLAISGNKISGDV--DVSRCVNLEFLDVSSN 207
Query: 358 SVSGPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNFKINSKWV 417
+ S +P G+ S+L +LD+S N L+G S TEL + N ++V
Sbjct: 208 NFSTGIP-FLGDCSALQHLDISGNKLSGDFSRA-ISTCTELKLLNISSN--------QFV 257
Query: 418 PPFQLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCW 477
P L L K L L ++ + + IP + + DT
Sbjct: 258 GPIPPLPL------------------KSLQYLSLAENKFTGEIPDFLSGAC--DT----- 292
Query: 478 MNWPDLRVLNLGNNKFTGSIPISMGXXXXXXXXXXXXXXXXGIIPV-PFENCSQLVALDM 536
L L+L N F G++P G G +P+ L LD+
Sbjct: 293 -----LTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDL 347
Query: 537 GENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICH--LSSLQILDVAYNRLSGSV 594
NEF G +P + + L L+L SN G +C ++LQ L + N +G +
Sbjct: 348 SFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKI 407
Query: 595 PKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDIS 654
P ++N + + ++ H SF + G + L+ +R + +
Sbjct: 408 PPTLSNCSELVSL----------HLSFN----------YLSGTIPSSLGSLSKLRDLKLW 447
Query: 655 MNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQ 712
+N GEIP E+ +K L++L L N G+IP + N ++ + LS N+++G+IP+
Sbjct: 448 LNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPK 505
Score = 79.3 bits (194), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 107/367 (29%), Positives = 155/367 (42%), Gaps = 74/367 (20%)
Query: 79 SGNDFQGIQIPEYIGSMDN-LRYLNLSGAGFAGWIPHQLGNLSNLMHLDLSGSYYELRVE 137
S N+F G +P + N L+ L L GF G IP L N S L+ L LS +Y +
Sbjct: 373 SSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTI- 431
Query: 138 DISWLAGPSLLEHLDT-SDVDLIKASDWLLVINS--------LPSLKVLKLFSCKLHHFA 188
PS L L D+ L WL ++ + +L+ L L L
Sbjct: 432 -------PSSLGSLSKLRDLKL-----WLNMLEGEIPQELMYVKTLETLILDFNDLTGEI 479
Query: 189 PLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLR 248
P +N ++LN + LS N IP W+ L +L L LS+N F G IP + SL
Sbjct: 480 PSGLSNCTNLNWISLSNNRL-TGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLI 538
Query: 249 YLDLSYNQFNSTI------------------------------SDCFSNFDDLEYLSLG- 277
+LDL+ N FN TI +C + LE+ +
Sbjct: 539 WLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRS 598
Query: 278 --------------YNRLQGTISSIGLENLTFIKTLDLSFNELGQDISEILDIISACAAF 323
+R+ G +S +N + LD+S+N L I + +I S F
Sbjct: 599 EQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPK--EIGSMPYLF 656
Query: 324 ELESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNL 383
L L ISG + +++G + L+ L LS N + G +P A L+ LT +DLSNNNL
Sbjct: 657 ILN---LGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNL 713
Query: 384 NGMISEI 390
+G I E+
Sbjct: 714 SGPIPEM 720
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 56/229 (24%), Positives = 89/229 (38%), Gaps = 6/229 (2%)
Query: 473 IPDCWMNWPDLRVLNLGN-NKFTGSIPISMGXXXXXXXXXXXXXXXXGIIPVPFENCSQL 531
IP N P L L +G N G IP ++ G IP L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 532 VALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSL-QILDVAYNRL 590
V LD N G +P + L + N++ G P S L + ++ NRL
Sbjct: 128 VTLDFSYNALSGTLPPSISS-LPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL 186
Query: 591 SGSVPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSI--LNLV 648
+G +P N S + ++ F +D ++I L + + +
Sbjct: 187 TGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNL 246
Query: 649 RSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIE 697
+D+ N G +P +T LK L SLN+S N+ G+IP+ GN++ +
Sbjct: 247 NGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFD 294
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 86/319 (26%), Positives = 137/319 (42%), Gaps = 44/319 (13%)
Query: 3 CLESERVALIKLKQDFKDPSNHLASWIGDVDCCE--WGGVVCNNITGHVLELNLERSELG 60
C ++ AL+++K+D +P+ L+SW+ DCC W GV+C+ T NL+ S L
Sbjct: 3 CNPQDKQALLQIKKDLGNPTT-LSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLN 61
Query: 61 GKIN---PAXXXXXXXXXXXXSG--NDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQ 115
P+ G N+ G IP I + L YL ++ +G IP
Sbjct: 62 LPKPYPIPSSLANLPYLNFLYIGGINNLVG-PIPPAIAKLTQLHYLYITHTNVSGAIPDF 120
Query: 116 LGNLSNLMHLDLSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLK 175
L + L+ LD S +S PS I+SLP+L
Sbjct: 121 LSQIKTLVTLDFS-------YNALSGTLPPS---------------------ISSLPNLV 152
Query: 176 VLKLFSCKLHHFAPLASANFSSL-NALDLSGN-LFGKTSIPSWVFGLSDLVFLDLSSNIF 233
+ ++ P + +FS L ++ +S N L GK IP F +L F+DLS N+
Sbjct: 153 GITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGK--IPP-TFANLNLAFVDLSRNML 209
Query: 234 RGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENL 293
G F + + + + L+ N + + +L L L NR+ GT+ GL L
Sbjct: 210 EGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLS-KNLNGLDLRNNRIYGTLPQ-GLTQL 267
Query: 294 TFIKTLDLSFNELGQDISE 312
F+ +L++SFN L +I +
Sbjct: 268 KFLHSLNVSFNNLCGEIPQ 286
Score = 55.8 bits (133), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 71/246 (28%), Positives = 115/246 (46%), Gaps = 15/246 (6%)
Query: 148 LEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCK-LHHFAPLASANFSSLNALDLS-G 205
+ +LD S ++L K + +LP L L + L P A A + L+ L ++
Sbjct: 52 VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111
Query: 206 NLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCF 265
N+ G +IP ++ + LV LD S N G +P +L +L + N+ + I D +
Sbjct: 112 NVSG--AIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSY 169
Query: 266 SNFDDL-EYLSLGYNRLQGTIS-SIGLENLTFIKTLDLSFNELGQDISEILDIISACAAF 323
+F L +++ NRL G I + NL F+ DLS N L D S + +
Sbjct: 170 GSFSKLFTSMTISRNRLTGKIPPTFANLNLAFV---DLSRNMLEGDASVLFG-----SDK 221
Query: 324 ELESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNL 383
+ + L ++ L ++GL KNL+ L L +N + G LP +L L L++S NNL
Sbjct: 222 NTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL 280
Query: 384 NGMISE 389
G I +
Sbjct: 281 CGEIPQ 286
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 54/229 (23%), Positives = 85/229 (37%), Gaps = 38/229 (16%)
Query: 392 FGNLTELAFFYANG-NSVNFKINSKWVPPFQLLALRLRSCHLGPHFPSWLHSQKHLSKLD 450
NL L F Y G N++ I QL L + ++ P +L K L LD
Sbjct: 72 LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLD 131
Query: 451 ISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGX-XXXXXX 509
S +S T+P + P+L + N+ +G+IP S G
Sbjct: 132 FSYNALSG-------------TLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTS 178
Query: 510 XXXXXXXXXGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRI----------- 558
G IP F N + L +D+ N G+ G + +I
Sbjct: 179 MTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL 237
Query: 559 -----------LNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPK 596
L+LR+N+++G P + L L L+V++N L G +P+
Sbjct: 238 GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 653 ISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQ 712
I+ N SG IP ++ +K L +L+ S+N+ G +P +I ++ ++ + GN+ISG IP
Sbjct: 108 ITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPD 167
Query: 713 XX-XXXXXXXXXXXXXXKLVGKIPSS 737
+L GKIP +
Sbjct: 168 SYGSFSKLFTSMTISRNRLTGKIPPT 193
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 48/103 (46%), Gaps = 2/103 (1%)
Query: 655 MNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQXX 714
+NN G IP + L L L ++H + G IP+ + ++++ +LD S N +SG +P
Sbjct: 86 INNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI 145
Query: 715 XXXXXXXXXXXXXXKLVGKIPSSTQLQS--FGASSITGNDLCG 755
++ G IP S S F + +I+ N L G
Sbjct: 146 SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTG 188
Score = 37.7 bits (86), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 324 ELESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNL 383
+L L++ +SG + + L K L TL S N++SG LPP+ L +L + N +
Sbjct: 102 QLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRI 161
Query: 384 NGMISEIHFGNLTEL 398
+G I + +G+ ++L
Sbjct: 162 SGAIPD-SYGSFSKL 175
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 63/216 (29%), Positives = 100/216 (46%), Gaps = 6/216 (2%)
Query: 171 LPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSS 230
L +LK L L + K + ++++NF SL L + GN + L +L LDLS
Sbjct: 300 LSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSH 359
Query: 231 NIFRGP--IPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSI 288
+ +NL+ L+ L+LSYN+ S ++ F LE L L + RL+ +
Sbjct: 360 DDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQS 419
Query: 289 GLENLTFIKTLDLSFNELGQDISEILDIISACAAFELE-SLFLRGCKISGQLTNQLGLFK 347
+NL +K L+LS + L ++ D + A L+ + F +G + Q TN L
Sbjct: 420 PFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKG---NIQKTNSLQTLG 476
Query: 348 NLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNL 383
L L LS +S A L + ++DLS+N L
Sbjct: 477 RLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRL 512
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 75/308 (24%), Positives = 118/308 (38%), Gaps = 33/308 (10%)
Query: 87 QIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHLDLSGSYYELRVEDISWLAGPS 146
++P + + L+ L LS F N +L HL + G+ L + L
Sbjct: 292 ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLEL-GTGCLENLE 350
Query: 147 LLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGN 206
L LD S D I+ SD + +L + + L S N S L L
Sbjct: 351 NLRELDLSHDD-IETSDCC---------------NLQLRNLSHLQSLNLSYNEPLSLKTE 394
Query: 207 LFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFS 266
F + L DL F L + P F+NL L+ L+LS++ + + F
Sbjct: 395 AFKECP----QLELLDLAFTRLKVKDAQSP----FQNLHLLKVLNLSHSLLDISSEQLFD 446
Query: 267 NFDDLEYLSLGYNRL-QGTISSI-GLENLTFIKTLDLSFNELGQDISEILDIISACAAFE 324
L++L+L N +G I L+ L ++ L LSF +L + +
Sbjct: 447 GLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVD 506
Query: 325 LESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLN 384
L L I L++ G++ N L+ N +S LP LS ++L N L+
Sbjct: 507 LSHNRLTSSSIEA-LSHLKGIYLN-----LASNHISIILPSLLPILSQQRTINLRQNPLD 560
Query: 385 GMISEIHF 392
S I+F
Sbjct: 561 CTCSNIYF 568
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 119/541 (21%), Positives = 193/541 (35%), Gaps = 93/541 (17%)
Query: 226 LDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTI 285
L+ S N+ F L +L +LDL+ Q D F + L+ L L N L
Sbjct: 38 LEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMA 97
Query: 286 SSI-----GLENLTFIKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLT 340
+ L++L FI+T IS I D I LESL+L IS
Sbjct: 98 ETALSGPKALKHLFFIQT----------GISSI-DFIPLHNQKTLESLYLGSNHISSIKL 146
Query: 341 NQLGLFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNG--------------M 386
+ + L L +N++ L T L L NLNG +
Sbjct: 147 PKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSL---NLNGNDIAGIEPGAFDSAV 203
Query: 387 ISEIHFGNLTELAFFYANGNSVNFKINSKWVPPFQ--------------LLALRLRSCHL 432
++FG L + N I S W+ F+ L + + S +L
Sbjct: 204 FQSLNFGGTQNLLVIFKGLK--NSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINL 261
Query: 433 GPHF-----PSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLN 487
H+ + H L +LD++ T +S+ +P + L+ L
Sbjct: 262 QKHYFFNISSNTFHCFSGLQELDLTATHLSE--------------LPSGLVGLSTLKKLV 307
Query: 488 LGNNKFTGSIPISMGXXXXXXXXXXXXXXXXGIIPV-PFENCSQLVALDMGENEF-VGNI 545
L NKF IS + EN L LD+ ++ +
Sbjct: 308 LSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDC 367
Query: 546 PTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLS---GSVP------- 595
S L+ LNL N+ + L++LD+A+ RL P
Sbjct: 368 CNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLL 427
Query: 596 KCINNFTAMATIGSHH---QVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVR--S 650
K +N ++ I S + A+ H + + ++ KG + + NS+ L R
Sbjct: 428 KVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFP-------KGNIQKTNSLQTLGRLEI 480
Query: 651 IDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKI 710
+ +S + S T+LK + ++LSHN E + +++ I L+L+ N IS +
Sbjct: 481 LVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIIL 539
Query: 711 P 711
P
Sbjct: 540 P 540
Score = 30.4 bits (67), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 648 VRSIDISMNNF--SGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQ 705
+R +D+S ++ S +++ NL LQSLNLS+N + E +E LDL+ +
Sbjct: 352 LRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTR 411
Query: 706 ISGKIPQ 712
+ K Q
Sbjct: 412 LKVKDAQ 418
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 99/379 (26%), Positives = 153/379 (40%), Gaps = 39/379 (10%)
Query: 126 DLSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPS-------LKVLK 178
D+S L+ S L+ + ++DL A +N LPS LK L
Sbjct: 252 DMSVESINLQKHRFSDLSSSTFRCFTRVQELDLTAAH-----LNGLPSGIEGMNSLKKLV 306
Query: 179 LFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLS-SNIFRGPI 237
L + + +A+F SL L + GN+ + L +L LDLS S+I
Sbjct: 307 LNANSFDQLCQINAASFPSLRDLYIKGNMRKLDLGTRCLEKLENLQKLDLSHSDIEASDC 366
Query: 238 PD-GFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFI 296
+ KNL L+YL+LSYN+ F LE L + + L +NL +
Sbjct: 367 CNLQLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPHSPFQNLHLL 426
Query: 297 KTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSD 356
+ L+LS L +L + L+ + IS TN L + +L L LS
Sbjct: 427 RVLNLSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQDGSISK--TNLLQMVGSLEILILSS 484
Query: 357 NSVSGPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNFKINSKW 416
++ A L ++ +LDLS+N+L G + L+ L Y N S N +I
Sbjct: 485 CNLLSIDQQAFHGLRNVNHLDLSHNSLTGDSMDA----LSHLKGLYLNMASNNIRI---- 536
Query: 417 VPPFQLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIY--QDTIP 474
+PP L AL +S H P LD + + I I W+ +++ +D+
Sbjct: 537 IPPHLLPALSQQSIINLSHNP-----------LDCTCSNIHFIT--WYKENLHKLEDSEE 583
Query: 475 DCWMNWPDLRVLNLGNNKF 493
N P LR + L + K
Sbjct: 584 TTCANPPSLRGVKLSDVKL 602
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 73/168 (43%), Gaps = 31/168 (18%)
Query: 98 LRYLNLSGAGFAGWIPHQLGNLSNLMHLDLSGSYYELRVEDISWLAGPSLLEHLDTSDVD 157
LR LNLS H L L +L HL+L G+ ++ D S
Sbjct: 426 LRVLNLSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQ------------------DGS--- 464
Query: 158 LIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWV 217
I ++ L ++ SL ++L L SC L A ++N LDLS N S+ +
Sbjct: 465 -ISKTNLLQMVGSL---EILILSSCNLLSIDQQAFHGLRNVNHLDLSHNSLTGDSMDA-- 518
Query: 218 FGLSDL--VFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISD 263
LS L ++L+++SN R P L+ ++LS+N + T S+
Sbjct: 519 --LSHLKGLYLNMASNNIRIIPPHLLPALSQQSIINLSHNPLDCTCSN 564
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 64/230 (27%), Positives = 100/230 (43%), Gaps = 31/230 (13%)
Query: 80 GNDFQGIQIPEYIGSMDNLRYLNLS--GAGFAGWIPHQLGNLSNLMHLDLSGSYYELRVE 137
GN F + +P +L +L+LS G F G ++L +LDLS + +
Sbjct: 338 GNAFSEVDLP-------SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLS---FNGVIT 387
Query: 138 DISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLASAN--- 194
S G LEHLD +L + S++ + L + L + H + N
Sbjct: 388 MSSNFLGLEQLEHLDFQHSNLKQMSEFSVF------LSLRNLIYLDISHTHTRVAFNGIF 441
Query: 195 --FSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDL 252
SSL L ++GN F + +P L +L FLDLS P F +L+SL+ L++
Sbjct: 442 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 501
Query: 253 SYNQFNSTIS---DCFSNFDDLEY-----LSLGYNRLQGTISSIGLENLT 294
S+N F S + C ++ L+Y ++ LQ SS+ NLT
Sbjct: 502 SHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLT 551
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 120/490 (24%), Positives = 190/490 (38%), Gaps = 106/490 (21%)
Query: 171 LPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSS 230
L SL+ L L + +L L+++ NL +P + L++L LDLSS
Sbjct: 99 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 158
Query: 231 NIFRG------------------------PI----PDGFKNLTSLRYLDLSYNQFNS--T 260
N + P+ P FK + L L L N F+S
Sbjct: 159 NKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLR-NNFDSLNV 216
Query: 261 ISDCFSNFDDLEY--LSLGYNRLQGTISSI------GLENLTFIKTLDLSF-NELGQDIS 311
+ C LE L LG R +G + GL NLT I+ L++ + DI
Sbjct: 217 MKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLT-IEEFRLAYLDYYLDDII 275
Query: 312 EILDIISACAAFELESLFLRGCKISG--------QLTN-QLGLF-----KNLHTLALSDN 357
++ + ++ ++F L S+ + K +L N + G F K+L L + N
Sbjct: 276 DLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSN 335
Query: 358 SVSGPLPPASGELSSLTYLDLSNNNLN--GMISEIHFGNLTELAFFYANGNSVNFKINSK 415
G + +L SL +LDLS N L+ G S+ FG T L + + N V ++S
Sbjct: 336 --KGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGT-TSLKYLDLSFNGV-ITMSSN 391
Query: 416 WVPPFQLLALRLRSCHLGP--HFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTI 473
++ QL L + +L F +L S ++L LDIS+T R +N I+
Sbjct: 392 FLGLEQLEHLDFQHSNLKQMSEFSVFL-SLRNLIYLDISHTHT-----RVAFNGIFN--- 442
Query: 474 PDCWMNWPDLRVLNLGNNKFTGSIPISMGXXXXXXXXXXXXXXXXGIIPVPFENCSQLVA 533
L VL + N F +P F L
Sbjct: 443 -----GLSSLEVLKMAGNSFQ-----------------------ENFLPDIFTELRNLTF 474
Query: 534 LDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGI--FPIQICHLSSLQILDVAYNRLS 591
LD+ + + PT S L++LN+ N + FP + L+SLQ+LD + N +
Sbjct: 475 LDLSQCQLEQLSPTAFNS-LSSLQVLNMSHNNFFSLDTFPYKC--LNSLQVLDYSLNHIM 531
Query: 592 GSVPKCINNF 601
S + + +F
Sbjct: 532 TSKKQELQHF 541
Score = 35.8 bits (81), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 62/117 (52%), Gaps = 6/117 (5%)
Query: 170 SLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDL-VFLDL 228
S P L+VL L C++ A + S L+ L L+GN ++ ++ GLS L + +
Sbjct: 50 SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS-GLSSLQKLVAV 108
Query: 229 SSNIFR-GPIPDGFKNLTSLRYLDLSYNQFNS-TISDCFSNFDDLEYLSLGYNRLQG 283
+N+ P G +L +L+ L++++N S + + FSN +LE+L L N++Q
Sbjct: 109 ETNLASLENFPIG--HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 30/46 (65%), Gaps = 5/46 (10%)
Query: 666 VTNLKGLQSLNLSHN---SFIGKIPETIGNMRSIESLDLSGNQISG 708
+ +LK L+ LN++HN SF K+PE N+ ++E LDLS N+I
Sbjct: 120 IGHLKTLKELNVAHNLIQSF--KLPEYFSNLTNLEHLDLSSNKIQS 163
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 70/151 (46%), Gaps = 9/151 (5%)
Query: 237 IPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFI 296
IPD S + LDLS+N S F +F +L+ L L +Q TI ++L+ +
Sbjct: 22 IPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHL 78
Query: 297 KTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSD 356
TL L+ N + S L S ++ L+ L ++ +G K L L ++
Sbjct: 79 STLILTGNPIQ---SLALGAFSGLSS--LQKLVAVETNLASLENFPIGHLKTLKELNVAH 133
Query: 357 NSV-SGPLPPASGELSSLTYLDLSNNNLNGM 386
N + S LP L++L +LDLS+N + +
Sbjct: 134 NLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 3/83 (3%)
Query: 525 FENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILD 584
F S L L M N F N + L L+L +L + P LSSLQ+L+
Sbjct: 441 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 500
Query: 585 VAYNRLSG--SVP-KCINNFTAM 604
+++N + P KC+N+ +
Sbjct: 501 MSHNNFFSLDTFPYKCLNSLQVL 523
Score = 29.6 bits (65), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 79 SGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHLDLS 128
+GN FQ +P+ + NL +L+LS P +LS+L L++S
Sbjct: 453 AGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMS 502
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 64/230 (27%), Positives = 99/230 (43%), Gaps = 31/230 (13%)
Query: 80 GNDFQGIQIPEYIGSMDNLRYLNLS--GAGFAGWIPHQLGNLSNLMHLDLSGSYYELRVE 137
GN F + +P +L +L+LS G F G +L +LDLS + +
Sbjct: 362 GNAFSEVDLP-------SLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLS---FNGVIT 411
Query: 138 DISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLASAN--- 194
S G LEHLD +L + S++ + L + L + H + N
Sbjct: 412 MSSNFLGLEQLEHLDFQHSNLKQMSEFSVF------LSLRNLIYLDISHTHTRVAFNGIF 465
Query: 195 --FSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDL 252
SSL L ++GN F + +P L +L FLDLS P F +L+SL+ L++
Sbjct: 466 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 525
Query: 253 SYNQFNSTIS---DCFSNFDDLEY-----LSLGYNRLQGTISSIGLENLT 294
S+N F S + C ++ L+Y ++ LQ SS+ NLT
Sbjct: 526 SHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLT 575
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 119/490 (24%), Positives = 191/490 (38%), Gaps = 106/490 (21%)
Query: 171 LPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSS 230
L SL+ L L + +L L+++ NL +P + L++L LDLSS
Sbjct: 123 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 182
Query: 231 NIFRG------------------------PI----PDGFKNLTSLRYLDLSYNQFNS--T 260
N + P+ P FK + L L L N F+S
Sbjct: 183 NKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLR-NNFDSLNV 240
Query: 261 ISDCFSNFDDLEY--LSLGYNRLQGTISSI------GLENLTFIKTLDLSFNELGQD-IS 311
+ C LE L LG R +G + GL NLT I+ L++ + D I
Sbjct: 241 MKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLT-IEEFRLAYLDYYLDGII 299
Query: 312 EILDIISACAAFELESLFLRGCKISG--------QLTN-QLGLF-----KNLHTLALSDN 357
++ + ++ ++F L S+ + K +L N + G F K+L L + N
Sbjct: 300 DLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSN 359
Query: 358 SVSGPLPPASGELSSLTYLDLSNNNLN--GMISEIHFGNLTELAFFYANGNSVNFKINSK 415
G + +L SL +LDLS N L+ G S+ FG ++ L + + N V ++S
Sbjct: 360 --KGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTIS-LKYLDLSFNGV-ITMSSN 415
Query: 416 WVPPFQLLALRLRSCHLGP--HFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTI 473
++ QL L + +L F +L S ++L LDIS+T R +N I+
Sbjct: 416 FLGLEQLEHLDFQHSNLKQMSEFSVFL-SLRNLIYLDISHTHT-----RVAFNGIFN--- 466
Query: 474 PDCWMNWPDLRVLNLGNNKFTGSIPISMGXXXXXXXXXXXXXXXXGIIPVPFENCSQLVA 533
L VL + N F +P F L
Sbjct: 467 -----GLSSLEVLKMAGNSFQ-----------------------ENFLPDIFTELRNLTF 498
Query: 534 LDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGI--FPIQICHLSSLQILDVAYNRLS 591
LD+ + + PT S L++LN+ N + FP + L+SLQ+LD + N +
Sbjct: 499 LDLSQCQLEQLSPTAFNS-LSSLQVLNMSHNNFFSLDTFPYKC--LNSLQVLDYSLNHIM 555
Query: 592 GSVPKCINNF 601
S + + +F
Sbjct: 556 TSKKQELQHF 565
Score = 35.8 bits (81), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 62/117 (52%), Gaps = 6/117 (5%)
Query: 170 SLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDL-VFLDL 228
S P L+VL L C++ A + S L+ L L+GN ++ ++ GLS L + +
Sbjct: 74 SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS-GLSSLQKLVAV 132
Query: 229 SSNIFR-GPIPDGFKNLTSLRYLDLSYNQFNS-TISDCFSNFDDLEYLSLGYNRLQG 283
+N+ P G +L +L+ L++++N S + + FSN +LE+L L N++Q
Sbjct: 133 ETNLASLENFPIG--HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 187
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 30/46 (65%), Gaps = 5/46 (10%)
Query: 666 VTNLKGLQSLNLSHN---SFIGKIPETIGNMRSIESLDLSGNQISG 708
+ +LK L+ LN++HN SF K+PE N+ ++E LDLS N+I
Sbjct: 144 IGHLKTLKELNVAHNLIQSF--KLPEYFSNLTNLEHLDLSSNKIQS 187
Score = 32.7 bits (73), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 85/183 (46%), Gaps = 15/183 (8%)
Query: 209 GKTSIP-SW---VFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDC 264
+SIP SW V + ++ + + N ++ IPD S + LDLS+N S
Sbjct: 16 ANSSIPESWEPCVEVVPNITYQCMELNFYK--IPDNLP--FSTKNLDLSFNPLRHLGSYS 71
Query: 265 FSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQDISEILDIISACAAFE 324
F +F +L+ L L +Q TI ++L+ + TL L+ N + S L S ++
Sbjct: 72 FFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQ---SLALGAFSGLSS-- 125
Query: 325 LESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSV-SGPLPPASGELSSLTYLDLSNNNL 383
L+ L ++ +G K L L ++ N + S LP L++L +LDLS+N +
Sbjct: 126 LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 185
Query: 384 NGM 386
+
Sbjct: 186 QSI 188
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 3/83 (3%)
Query: 525 FENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILD 584
F S L L M N F N + L L+L +L + P LSSLQ+L+
Sbjct: 465 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 524
Query: 585 VAYNRLSG--SVP-KCINNFTAM 604
+++N + P KC+N+ +
Sbjct: 525 MSHNNFFSLDTFPYKCLNSLQVL 547
Score = 29.6 bits (65), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 79 SGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHLDLS 128
+GN FQ +P+ + NL +L+LS P +LS+L L++S
Sbjct: 477 AGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMS 526
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 58/205 (28%), Positives = 89/205 (43%), Gaps = 19/205 (9%)
Query: 80 GNDFQGIQIPEYIGSMDNLRYLNLS--GAGFAGWIPHQLGNLSNLMHLDLSGSYYELRVE 137
GN F + +P +L +L+LS G F G ++L +LDLS + +
Sbjct: 338 GNAFSEVDLP-------SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLS---FNGVIT 387
Query: 138 DISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLASANF-- 195
S G LEHLD +L + S++ + + SL+ L H + F
Sbjct: 388 MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL----SLRNLIYLDISHTHTRVAFNGIFNG 443
Query: 196 -SSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSY 254
SSL L ++GN F + +P L +L FLDLS P F +L+SL+ L+++
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMAS 503
Query: 255 NQFNSTISDCFSNFDDLEYLSLGYN 279
NQ S F L+ + L N
Sbjct: 504 NQLKSVPDGIFDRLTSLQKIWLHTN 528
Score = 37.0 bits (84), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 110/452 (24%), Positives = 179/452 (39%), Gaps = 80/452 (17%)
Query: 171 LPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSS 230
L SL+ L L + +L L+++ NL +P + L++L LDLSS
Sbjct: 99 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 158
Query: 231 NIFRG------------------------PI----PDGFKNLTSLRYLDLSYNQFNS--T 260
N + P+ P FK + L L L N F+S
Sbjct: 159 NKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLR-NNFDSLNV 216
Query: 261 ISDCFSNFDDLEY--LSLGYNRLQGTISSI------GLENLTFIKTLDLSF-NELGQDIS 311
+ C LE L LG R +G + GL NLT I+ L++ + DI
Sbjct: 217 MKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLT-IEEFRLAYLDYYLDDII 275
Query: 312 EILDIISACAAFELESLFLRGCKISG--------QLTN-QLGLF-----KNLHTLALSDN 357
++ + ++ ++F L S+ + K +L N + G F K+L L + N
Sbjct: 276 DLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSN 335
Query: 358 SVSGPLPPASGELSSLTYLDLSNNNLN--GMISEIHFGNLTELAFFYANGNSVNFKINSK 415
G + +L SL +LDLS N L+ G S+ FG T L + + N V ++S
Sbjct: 336 --KGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGT-TSLKYLDLSFNGV-ITMSSN 391
Query: 416 WVPPFQLLALRLRSCHLGP--HFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTI 473
++ QL L + +L F +L S ++L LDIS+T R +N I+
Sbjct: 392 FLGLEQLEHLDFQHSNLKQMSEFSVFL-SLRNLIYLDISHTHT-----RVAFNGIFN--- 442
Query: 474 PDCWMNWPDLRVLNLGNNKFTGS-IPISMGXXXXXXXXXXXXXXXXGIIPVPFENCSQLV 532
L VL + N F + +P + P F + S L
Sbjct: 443 -----GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 497
Query: 533 ALDMGENEFVGNIPTWMGERFSRLRILNLRSN 564
L+M N+ + ++P + +R + L+ + L +N
Sbjct: 498 VLNMASNQ-LKSVPDGIFDRLTSLQKIWLHTN 528
Score = 36.2 bits (82), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 62/117 (52%), Gaps = 6/117 (5%)
Query: 170 SLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDL-VFLDL 228
S P L+VL L C++ A + S L+ L L+GN ++ ++ GLS L + +
Sbjct: 50 SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS-GLSSLQKLVAV 108
Query: 229 SSNIFR-GPIPDGFKNLTSLRYLDLSYNQFNS-TISDCFSNFDDLEYLSLGYNRLQG 283
+N+ P G +L +L+ L++++N S + + FSN +LE+L L N++Q
Sbjct: 109 ETNLASLENFPIG--HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 30/44 (68%), Gaps = 5/44 (11%)
Query: 666 VTNLKGLQSLNLSHN---SFIGKIPETIGNMRSIESLDLSGNQI 706
+ +LK L+ LN++HN SF K+PE N+ ++E LDLS N+I
Sbjct: 120 IGHLKTLKELNVAHNLIQSF--KLPEYFSNLTNLEHLDLSSNKI 161
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 40/87 (45%), Gaps = 2/87 (2%)
Query: 525 FENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILD 584
F S L L M N F N + L L+L +L + P LSSLQ+L+
Sbjct: 441 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 500
Query: 585 VAYNRLSGSVPKCI-NNFTAMATIGSH 610
+A N+L SVP I + T++ I H
Sbjct: 501 MASNQLK-SVPDGIFDRLTSLQKIWLH 526
Score = 32.7 bits (73), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 70/151 (46%), Gaps = 9/151 (5%)
Query: 237 IPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFI 296
IPD S + LDLS+N S F +F +L+ L L +Q TI ++L+ +
Sbjct: 22 IPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHL 78
Query: 297 KTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSD 356
TL L+ N + S L S ++ L+ L ++ +G K L L ++
Sbjct: 79 STLILTGNPIQ---SLALGAFSGLSS--LQKLVAVETNLASLENFPIGHLKTLKELNVAH 133
Query: 357 NSV-SGPLPPASGELSSLTYLDLSNNNLNGM 386
N + S LP L++L +LDLS+N + +
Sbjct: 134 NLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 60/218 (27%), Positives = 95/218 (43%), Gaps = 7/218 (3%)
Query: 171 LPSLKVLKLFSCKLHHFAPL---ASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLD 227
+ L +LK ++HF L ++ANF SL L + GN+ + L +L LD
Sbjct: 294 MKGLNLLKKLVLSVNHFDQLCQISAANFPSLTHLYIRGNVKKLHLGVGCLEKLGNLQTLD 353
Query: 228 LSSNIFRGP--IPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTI 285
LS N KNL+ L+ L+LS+N+ S F LE L L + RL
Sbjct: 354 LSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTRLHINA 413
Query: 286 SSIGLENLTFIKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGL 345
+NL F++ L+L++ L +L + L+ + I+ TN L
Sbjct: 414 PQSPFQNLHFLQVLNLTYCFLDTSNQHLLAGLPVLRHLNLKGNHFQDGTITK--TNLLQT 471
Query: 346 FKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNL 383
+L L LS + A L ++++DLS+N+L
Sbjct: 472 VGSLEVLILSSCGLLSIDQQAFHSLGKMSHVDLSHNSL 509
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 57/200 (28%), Positives = 86/200 (43%), Gaps = 31/200 (15%)
Query: 197 SLNALDLSGNLFGKTSIPSWVFG-LSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYN 255
S+ +L+L + F + I S F + L LDL++ +G +P G K L L+ L LS N
Sbjct: 252 SVESLNLQEHRF--SDISSTTFQCFTQLQELDLTATHLKG-LPSGMKGLNLLKKLVLSVN 308
Query: 256 QFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQDISEILD 315
F+ +NF L +L + N + + LE L ++TLDLS N++
Sbjct: 309 HFDQLCQISAANFPSLTHLYIRGNVKKLHLGVGCLEKLGNLQTLDLSHNDIEA------- 361
Query: 316 IISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVSGPLPPASGELSSLTY 375
S C + +L++L +L TL LS N G A E L
Sbjct: 362 --SDCCSLQLKNL------------------SHLQTLNLSHNEPLGLQSQAFKECPQLEL 401
Query: 376 LDLSNNNLNGMISEIHFGNL 395
LDL+ L+ + F NL
Sbjct: 402 LDLAFTRLHINAPQSPFQNL 421
Score = 37.4 bits (85), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 70/162 (43%), Gaps = 10/162 (6%)
Query: 559 LNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSG--SVPKCINNFTAMATIGSHH----Q 612
LNL+ ++ I + LQ LD+ L G S K +N + +H Q
Sbjct: 256 LNLQEHRFSDISSTTFQCFTQLQELDLTATHLKGLPSGMKGLNLLKKLVLSVNHFDQLCQ 315
Query: 613 VKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGE--IPMEVTNLK 670
+ A S + YI + + G V L ++++D+S N+ +++ NL
Sbjct: 316 ISAANFPSLTHLYIRGNVKKLHLG--VGCLEKLGNLQTLDLSHNDIEASDCCSLQLKNLS 373
Query: 671 GLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQ 712
LQ+LNLSHN +G + +E LDL+ ++ PQ
Sbjct: 374 HLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTRLHINAPQ 415
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 60/215 (27%), Positives = 93/215 (43%), Gaps = 24/215 (11%)
Query: 95 MDNLRYLNLS--GAGFAGWIPHQLGNLSNLMHLDLSGSYYELRVEDISWLAGPSLLEHLD 152
+ L L+LS G F G ++L +LDLS + + S G LEHLD
Sbjct: 51 LTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS---FNGVITMSSNFLGLEQLEHLD 107
Query: 153 TSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLASAN-----FSSLNALDLSGNL 207
+L + S++ + L + L + H + N SSL L ++GN
Sbjct: 108 FQHSNLKQMSEFSVF------LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS 161
Query: 208 FGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTIS---DC 264
F + +P L +L FLDLS P F +L+SL+ L++S+N F S + C
Sbjct: 162 FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKC 221
Query: 265 FSNFDDLEY-----LSLGYNRLQGTISSIGLENLT 294
++ L+Y ++ LQ SS+ NLT
Sbjct: 222 LNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLT 256
Score = 32.3 bits (72), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 61/239 (25%), Positives = 97/239 (40%), Gaps = 48/239 (20%)
Query: 369 ELSSLTYLDLSNNNLN--GMISEIHFGNLTELAFFYANGNSVNFKINSKWVPPFQLLALR 426
+L+ LT L LS+N L+ G S+ FG T L + + N V ++S ++ QL L
Sbjct: 50 KLTQLTKLSLSSNGLSFKGCCSQSDFGT-TSLKYLDLSFNGV-ITMSSNFLGLEQLEHLD 107
Query: 427 LRSCHLGP--HFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLR 484
+ +L F +L S ++L LDIS+T R +N I+ L
Sbjct: 108 FQHSNLKQMSEFSVFL-SLRNLIYLDISHTHT-----RVAFNGIFN--------GLSSLE 153
Query: 485 VLNLGNNKFTGSIPISMGXXXXXXXXXXXXXXXXGIIPVPFENCSQLVALDMGENEFVGN 544
VL + N F +P F L LD+ + +
Sbjct: 154 VLKMAGNSF-----------------------QENFLPDIFTELRNLTFLDLSQCQLEQL 190
Query: 545 IPTWMGERFSRLRILNLRSNKLHGI--FPIQICHLSSLQILDVAYNRLSGSVPKCINNF 601
PT S L++LN+ N + FP + L+SLQ+LD + N + S + + +F
Sbjct: 191 SPTAFNS-LSSLQVLNMSHNNFFSLDTFPYKC--LNSLQVLDYSLNHIMTSKKQELQHF 246
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 3/83 (3%)
Query: 525 FENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILD 584
F S L L M N F N + L L+L +L + P LSSLQ+L+
Sbjct: 146 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 205
Query: 585 VAYNRLSG--SVP-KCINNFTAM 604
+++N + P KC+N+ +
Sbjct: 206 MSHNNFFSLDTFPYKCLNSLQVL 228
Score = 30.0 bits (66), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 79 SGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHLDLS 128
+GN FQ +P+ + NL +L+LS P +LS+L L++S
Sbjct: 158 AGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMS 207
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 56/166 (33%), Positives = 77/166 (46%), Gaps = 24/166 (14%)
Query: 239 DGFKNLTSLRYLDLSYNQFNSTISD--CFSNFDDLEYLSLGYNRLQGTISSIGLENLTFI 296
D KNLT+L L+LS N TISD S L+ LS N++ L NLT +
Sbjct: 123 DPLKNLTNLNRLELSSN----TISDISALSGLTSLQQLSFSSNQVTDLKP---LANLTTL 175
Query: 297 KTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSD 356
+ LD+S N++ DI LESL +IS LG+ NL L+L+
Sbjct: 176 ERLDISSNKVS-------DISVLAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNG 226
Query: 357 NSVS--GPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAF 400
N + G L L++LT LDL+NN ++ + LTEL
Sbjct: 227 NQLKDIGTL----ASLTNLTDLDLANNQISNLAPLSGLTKLTELKL 268
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 56/166 (33%), Positives = 77/166 (46%), Gaps = 24/166 (14%)
Query: 239 DGFKNLTSLRYLDLSYNQFNSTISD--CFSNFDDLEYLSLGYNRLQGTISSIGLENLTFI 296
D KNLT+L L+LS N TISD S L+ LS N++ L NLT +
Sbjct: 123 DPLKNLTNLNRLELSSN----TISDISALSGLTSLQQLSFSSNQVTDLKP---LANLTTL 175
Query: 297 KTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSD 356
+ LD+S N++ DI LESL +IS LG+ NL L+L+
Sbjct: 176 ERLDISSNKVS-------DISVLAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNG 226
Query: 357 NSVS--GPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAF 400
N + G L L++LT LDL+NN ++ + LTEL
Sbjct: 227 NQLKDIGTL----ASLTNLTDLDLANNQISNLAPLSGLTKLTELKL 268
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 55/107 (51%), Gaps = 3/107 (2%)
Query: 220 LSDLVFLDLSSNIFRGPIPDG-FKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGY 278
L++L +L L+ N + +P+G F LT+L+ L L NQ S F +L YL+L +
Sbjct: 84 LTNLTYLILTGNQLQS-LPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAH 142
Query: 279 NRLQGTISSIGLENLTFIKTLDLSFNELGQDISEILDIISACAAFEL 325
N+LQ + + LT + LDLS+N+L + D ++ L
Sbjct: 143 NQLQSLPKGV-FDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRL 188
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 65/139 (46%), Gaps = 27/139 (19%)
Query: 168 INSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGN--------LFGK--------- 210
I LP+++ L L KLH + L ++L L L+GN +F K
Sbjct: 59 IQYLPNVRYLALGGNKLHDISALKE--LTNLTYLILTGNQLQSLPNGVFDKLTNLKELVL 116
Query: 211 -----TSIPSWVF-GLSDLVFLDLSSNIFRGPIPDG-FKNLTSLRYLDLSYNQFNSTISD 263
S+P VF L++L +L+L+ N + +P G F LT+L LDLSYNQ S
Sbjct: 117 VENQLQSLPDGVFDKLTNLTYLNLAHNQLQS-LPKGVFDKLTNLTELDLSYNQLQSLPEG 175
Query: 264 CFSNFDDLEYLSLGYNRLQ 282
F L+ L L N+L+
Sbjct: 176 VFDKLTQLKDLRLYQNQLK 194
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 59/206 (28%), Positives = 89/206 (43%), Gaps = 21/206 (10%)
Query: 82 DFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHLDLSGSYYELRVEDISW 141
D + +Q +Y + N+RYL L G L L+NL +L L+G+ +L+
Sbjct: 52 DIKSVQGIQY---LPNVRYLALGGNKLHDI--SALKELTNLTYLILTGN--QLQSLPNGV 104
Query: 142 LAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLASANFSSLNAL 201
+ L+ L + L D V + L +L L L +L ++L L
Sbjct: 105 FDKLTNLKELVLVENQLQSLPDG--VFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTEL 162
Query: 202 DLSGNLFGKTSIPSWVF-GLSDLVFLDLSSNIFRGPIPDG-FKNLTSLRYLDLSYNQFNS 259
DLS N S+P VF L+ L L L N + +PDG F LTSL+Y+ L N ++
Sbjct: 163 DLSYNQL--QSLPEGVFDKLTQLKDLRLYQNQLKS-VPDGVFDRLTSLQYIWLHDNPWDC 219
Query: 260 TISDCFSNFDDLEYLSLGYNRLQGTI 285
T + YLS N+ G +
Sbjct: 220 TCP-------GIRYLSEWINKHSGVV 238
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 48/99 (48%), Gaps = 2/99 (2%)
Query: 525 FENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILD 584
F+ + L L + EN+ ++P + ++ + L LNL N+L + L++L LD
Sbjct: 105 FDKLTNLKELVLVENQL-QSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELD 163
Query: 585 VAYNRLSGSVPKCINNFTAMATIGSHH-QVKAIYHASFE 622
++YN+L + T + + + Q+K++ F+
Sbjct: 164 LSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFD 202
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 78/167 (46%), Gaps = 27/167 (16%)
Query: 239 DGFKNLTSLRYLDLSYNQFNSTISD--CFSNFDDLEYLSLGYNRLQGTISSIG-LENLTF 295
D KNLT+L L+LS N TISD S L+ LS G ++ + L NLT
Sbjct: 127 DPLKNLTNLNRLELSSN----TISDISALSGLTSLQQLSFG-----NQVTDLKPLANLTT 177
Query: 296 IKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALS 355
++ LD+S N++ DI LESL +IS LG+ NL L+L+
Sbjct: 178 LERLDISSNKVS-------DISVLAKLTNLESLIATNNQISD--ITPLGILTNLDELSLN 228
Query: 356 DNSVS--GPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAF 400
N + G L L++LT LDL+NN ++ + LTEL
Sbjct: 229 GNQLKDIGTL----ASLTNLTDLDLANNQISNLAPLSGLTKLTELKL 271
Score = 30.0 bits (66), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 91/198 (45%), Gaps = 30/198 (15%)
Query: 523 VPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQI 582
P +N ++LV + M N+ P + L L L +N++ I P++ +L++L
Sbjct: 83 TPLKNLTKLVDILMNNNQIADITPL---ANLTNLTGLTLFNNQITDIDPLK--NLTNLNR 137
Query: 583 LDVAYNRLSGSVPKCINNFTAMATIGSHHQVKAIYH----ASFENDYI----VEEISLVM 634
L+++ N +S ++ T++ + +QV + + E I V +IS++
Sbjct: 138 LELSSNTISDI--SALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLA 195
Query: 635 KGFMVEYNSILNLVRSIDISMNNFSGEIPMEV-TNLKGLQSLNLSHNSFIGKIPETIGNM 693
K L + S+ + N S P+ + TNL L SLN + IG T+ ++
Sbjct: 196 K---------LTNLESLIATNNQISDITPLGILTNLDEL-SLNGNQLKDIG----TLASL 241
Query: 694 RSIESLDLSGNQISGKIP 711
++ LDL+ NQIS P
Sbjct: 242 TNLTDLDLANNQISNLAP 259
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 78/167 (46%), Gaps = 27/167 (16%)
Query: 239 DGFKNLTSLRYLDLSYNQFNSTISD--CFSNFDDLEYLSLGYNRLQGTISSIG-LENLTF 295
D KNLT+L L+LS N TISD S L+ LS G ++ + L NLT
Sbjct: 128 DPLKNLTNLNRLELSSN----TISDISALSGLTSLQQLSFG-----NQVTDLKPLANLTT 178
Query: 296 IKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALS 355
++ LD+S N++ DI LESL +IS LG+ NL L+L+
Sbjct: 179 LERLDISSNKVS-------DISVLAKLTNLESLIATNNQISD--ITPLGILTNLDELSLN 229
Query: 356 DNSVS--GPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAF 400
N + G L L++LT LDL+NN ++ + LTEL
Sbjct: 230 GNQLKDIGTL----ASLTNLTDLDLANNQISNLAPLSGLTKLTELKL 272
Score = 30.0 bits (66), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 91/198 (45%), Gaps = 30/198 (15%)
Query: 523 VPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQI 582
P +N ++LV + M N+ P + L L L +N++ I P++ +L++L
Sbjct: 84 TPLKNLTKLVDILMNNNQIADITPL---ANLTNLTGLTLFNNQITDIDPLK--NLTNLNR 138
Query: 583 LDVAYNRLSGSVPKCINNFTAMATIGSHHQVKAIYH----ASFENDYI----VEEISLVM 634
L+++ N +S ++ T++ + +QV + + E I V +IS++
Sbjct: 139 LELSSNTISDI--SALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLA 196
Query: 635 KGFMVEYNSILNLVRSIDISMNNFSGEIPMEV-TNLKGLQSLNLSHNSFIGKIPETIGNM 693
K L + S+ + N S P+ + TNL L SLN + IG T+ ++
Sbjct: 197 K---------LTNLESLIATNNQISDITPLGILTNLDEL-SLNGNQLKDIG----TLASL 242
Query: 694 RSIESLDLSGNQISGKIP 711
++ LDL+ NQIS P
Sbjct: 243 TNLTDLDLANNQISNLAP 260
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 77/166 (46%), Gaps = 24/166 (14%)
Query: 239 DGFKNLTSLRYLDLSYNQFNSTISD--CFSNFDDLEYLSLGYNRLQGTISSIGLENLTFI 296
D KNLT+L L+LS N TISD S L+ L+ N++ L NLT +
Sbjct: 123 DPLKNLTNLNRLELSSN----TISDISALSGLTSLQQLNFSSNQVTDLKP---LANLTTL 175
Query: 297 KTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSD 356
+ LD+S N++ DI LESL +IS LG+ NL L+L+
Sbjct: 176 ERLDISSNKVS-------DISVLAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNG 226
Query: 357 NSVS--GPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAF 400
N + G L L++LT LDL+NN ++ + LTEL
Sbjct: 227 NQLKDIGTL----ASLTNLTDLDLANNQISNLAPLSGLTKLTELKL 268
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 61/121 (50%), Gaps = 6/121 (4%)
Query: 201 LDLSGNLFGKTSIPSWVFG-LSDLVFLDLSSNIFRGPIPDG-FKNLTSLRYLDLSYNQFN 258
LDL N S+P+ VF L+ L L L N + +P+G F LTSL YL+LS NQ
Sbjct: 33 LDLETNSL--KSLPNGVFDELTSLTQLYLGGNKLQS-LPNGVFNKLTSLTYLNLSTNQLQ 89
Query: 259 STISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQDISEILDIIS 318
S + F L+ L+L N+LQ + + LT +K L L N+L + D ++
Sbjct: 90 SLPNGVFDKLTQLKELALNTNQLQSLPDGV-FDKLTQLKDLRLYQNQLKSVPDGVFDRLT 148
Query: 319 A 319
+
Sbjct: 149 S 149
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 60/118 (50%), Gaps = 5/118 (4%)
Query: 209 GKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDG-FKNLTSLRYLDLSYNQFNSTISDCFSN 267
G+TS+P+ + + +LDL +N + +P+G F LTSL L L N+ S + F+
Sbjct: 18 GRTSVPTGI--PAQTTYLDLETNSLKS-LPNGVFDELTSLTQLYLGGNKLQSLPNGVFNK 74
Query: 268 FDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQDISEILDIISACAAFEL 325
L YL+L N+LQ + + + LT +K L L+ N+L + D ++ L
Sbjct: 75 LTSLTYLNLSTNQLQSLPNGV-FDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRL 131
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 48/90 (53%), Gaps = 5/90 (5%)
Query: 195 FSSLNALDLSGNLFGKTSIPSWVFG-LSDLVFLDLSSNIFRGPIPDG-FKNLTSLRYLDL 252
+SL L L GN S+P+ VF L+ L +L+LS+N + +P+G F LT L+ L L
Sbjct: 51 LTSLTQLYLGGNKL--QSLPNGVFNKLTSLTYLNLSTNQLQS-LPNGVFDKLTQLKELAL 107
Query: 253 SYNQFNSTISDCFSNFDDLEYLSLGYNRLQ 282
+ NQ S F L+ L L N+L+
Sbjct: 108 NTNQLQSLPDGVFDKLTQLKDLRLYQNQLK 137
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 53/121 (43%), Gaps = 12/121 (9%)
Query: 167 VINSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVF-GLSDLVF 225
V N L SL L L + +L + L L L+ N S+P VF L+ L
Sbjct: 71 VFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQL--QSLPDGVFDKLTQLKD 128
Query: 226 LDLSSNIFRGPIPDG-FKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGT 284
L L N + +PDG F LTSL+Y+ L N ++ T + YLS N+ G
Sbjct: 129 LRLYQNQLKS-VPDGVFDRLTSLQYIWLHDNPWDCTCP-------GIRYLSEWINKHSGV 180
Query: 285 I 285
+
Sbjct: 181 V 181
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 78/167 (46%), Gaps = 27/167 (16%)
Query: 239 DGFKNLTSLRYLDLSYNQFNSTISD--CFSNFDDLEYLSLGYNRLQGTISSIG-LENLTF 295
D KNLT+L L+LS N TISD S L+ L+ G ++ + L NLT
Sbjct: 123 DPLKNLTNLNRLELSSN----TISDISALSGLTSLQQLNFG-----NQVTDLKPLANLTT 173
Query: 296 IKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALS 355
++ LD+S N++ DI LESL +IS LG+ NL L+L+
Sbjct: 174 LERLDISSNKVS-------DISVLAKLTNLESLIATNNQISD--ITPLGILTNLDELSLN 224
Query: 356 DNSVS--GPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAF 400
N + G L L++LT LDL+NN ++ + LTEL
Sbjct: 225 GNQLKDIGTL----ASLTNLTDLDLANNQISNLAPLSGLTKLTELKL 267
Score = 29.6 bits (65), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 91/198 (45%), Gaps = 30/198 (15%)
Query: 523 VPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQI 582
P +N ++LV + M N+ P + L L L +N++ I P++ +L++L
Sbjct: 79 TPLKNLTKLVDILMNNNQIADITPL---ANLTNLTGLTLFNNQITDIDPLK--NLTNLNR 133
Query: 583 LDVAYNRLSGSVPKCINNFTAMATIGSHHQVKAIYH----ASFENDYI----VEEISLVM 634
L+++ N +S ++ T++ + +QV + + E I V +IS++
Sbjct: 134 LELSSNTISDI--SALSGLTSLQQLNFGNQVTDLKPLANLTTLERLDISSNKVSDISVLA 191
Query: 635 KGFMVEYNSILNLVRSIDISMNNFSGEIPMEV-TNLKGLQSLNLSHNSFIGKIPETIGNM 693
K L + S+ + N S P+ + TNL L SLN + IG T+ ++
Sbjct: 192 K---------LTNLESLIATNNQISDITPLGILTNLDEL-SLNGNQLKDIG----TLASL 237
Query: 694 RSIESLDLSGNQISGKIP 711
++ LDL+ NQIS P
Sbjct: 238 TNLTDLDLANNQISNLAP 255
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 78/167 (46%), Gaps = 27/167 (16%)
Query: 239 DGFKNLTSLRYLDLSYNQFNSTISD--CFSNFDDLEYLSLGYNRLQGTISSIG-LENLTF 295
D KNLT+L L+LS N TISD S L+ L+ G ++ + L NLT
Sbjct: 123 DPLKNLTNLNRLELSSN----TISDISALSGLTSLQQLNFG-----NQVTDLKPLANLTT 173
Query: 296 IKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALS 355
++ LD+S N++ DI LESL +IS LG+ NL L+L+
Sbjct: 174 LERLDISSNKVS-------DISVLAKLTNLESLIATNNQISD--ITPLGILTNLDELSLN 224
Query: 356 DNSVS--GPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAF 400
N + G L L++LT LDL+NN ++ + LTEL
Sbjct: 225 GNQLKDIGTL----ASLTNLTDLDLANNQISNLAPLSGLTKLTELKL 267
Score = 29.6 bits (65), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 91/198 (45%), Gaps = 30/198 (15%)
Query: 523 VPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQI 582
P +N ++LV + M N+ P + L L L +N++ I P++ +L++L
Sbjct: 79 TPLKNLTKLVDILMNNNQIADITPL---ANLTNLTGLTLFNNQITDIDPLK--NLTNLNR 133
Query: 583 LDVAYNRLSGSVPKCINNFTAMATIGSHHQVKAIYH----ASFENDYI----VEEISLVM 634
L+++ N +S ++ T++ + +QV + + E I V +IS++
Sbjct: 134 LELSSNTISDI--SALSGLTSLQQLNFGNQVTDLKPLANLTTLERLDISSNKVSDISVLA 191
Query: 635 KGFMVEYNSILNLVRSIDISMNNFSGEIPMEV-TNLKGLQSLNLSHNSFIGKIPETIGNM 693
K L + S+ + N S P+ + TNL L SLN + IG T+ ++
Sbjct: 192 K---------LTNLESLIATNNQISDITPLGILTNLDEL-SLNGNQLKDIG----TLASL 237
Query: 694 RSIESLDLSGNQISGKIP 711
++ LDL+ NQIS P
Sbjct: 238 TNLTDLDLANNQISNLAP 255
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 52/117 (44%), Gaps = 2/117 (1%)
Query: 212 SIPSWVFG-LSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDD 270
++P VF L +L L L N + P F +LT L YL L YN+ S F
Sbjct: 99 ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTS 158
Query: 271 LEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQDISEILDIISACAAFELES 327
L+ L L N+L+ + + LT +KTL L N+L + D + +L+
Sbjct: 159 LKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQE 214
Score = 37.4 bits (85), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 45/95 (47%), Gaps = 4/95 (4%)
Query: 212 SIPSWVF-GLSDLVFLDLSSNIFRGPIPDG-FKNLTSLRYLDLSYNQFNSTISDCFSNFD 269
S+P VF L+ L +L L N + +P G F LTSL+ L L NQ F
Sbjct: 123 SLPPRVFDSLTKLTYLSLGYNELQS-LPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLT 181
Query: 270 DLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFN 304
+L+ L L N+L+ + ++L +K L L N
Sbjct: 182 ELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQEN 215
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 42/185 (22%), Positives = 83/185 (44%), Gaps = 34/185 (18%)
Query: 534 LDMGENEFVGNIPTWMGERFSRLRILNLRSNKLH----GIFPIQICHLSSLQILDVAYNR 589
LD+ N+ + ++P+ R ++LR+L L NKL GIF L +L+ L V N+
Sbjct: 42 LDLQSNK-LSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFK----ELKNLETLWVTDNK 96
Query: 590 LSGSVPKCINNFTAMATIG-SHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLV 648
L + +A + +Q+K++ F++ + +SL YN + +L
Sbjct: 97 LQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSL-------GYNELQSLP 149
Query: 649 RSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPE-TIGNMRSIESLDLSGNQIS 707
+ + L L+ L L +N+ + ++PE + +++L L NQ+
Sbjct: 150 KGV--------------FDKLTSLKELRL-YNNQLKRVPEGAFDKLTELKTLKLDNNQLK 194
Query: 708 GKIPQ 712
++P+
Sbjct: 195 -RVPE 198
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 68/163 (41%), Gaps = 11/163 (6%)
Query: 248 RYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELG 307
+ LDL N+ +S S F L L L N+LQ + I + L ++TL ++ N+L
Sbjct: 40 KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGI-FKELKNLETLWVTDNKLQ 98
Query: 308 QDISEILDIISACAAFELESLFLRGC--KISGQLTNQLGLFKNLHTLALSDNSVSGPLPP 365
+ D + A L+ L+ ++ LT L L+L N +
Sbjct: 99 ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLT-------KLTYLSLGYNELQSLPKG 151
Query: 366 ASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSV 408
+L+SL L L NN L + E F LTEL + N +
Sbjct: 152 VFDKLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQL 193
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 68/145 (46%), Gaps = 4/145 (2%)
Query: 239 DGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKT 298
D F +L SL +LDLS N +S S F L+YL+L N Q + NLT ++T
Sbjct: 94 DAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQT 153
Query: 299 LDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSDNS 358
L + E +I I D + ELE ++ + + L +++H L L +
Sbjct: 154 LRIGNVETFSEIRRI-DFAGLTSLNELE---IKALSLRNYQSQSLKSIRDIHHLTLHLSE 209
Query: 359 VSGPLPPASGELSSLTYLDLSNNNL 383
+ L + LSS+ YL+L + NL
Sbjct: 210 SAFLLEIFADILSSVRYLELRDTNL 234
Score = 33.5 bits (75), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 50/107 (46%), Gaps = 13/107 (12%)
Query: 296 IKTLDLSFNELGQ----DISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHT 351
+K+LDLSFN++ D+ ACA L+ L L+ +I+ + +L
Sbjct: 54 MKSLDLSFNKITYIGHGDLR-------ACA--NLQVLILKSSRINTIEGDAFYSLGSLEH 104
Query: 352 LALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTEL 398
L LSDN +S G LSSL YL+L N + F NLT L
Sbjct: 105 LDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNL 151
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 77/315 (24%), Positives = 124/315 (39%), Gaps = 50/315 (15%)
Query: 91 YIGSMDNLRYLNLSGAGFAGW-IPHQLGNLSNLMHLDLSG--SYYELRVEDISWLAGPSL 147
+ G + +L+YLNL G + + NL+NL L + ++ E+R D AG +
Sbjct: 119 WFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRID---FAGLTS 175
Query: 148 LEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLA---SANFSSLNALDLS 204
L L+ + L SL S++ + + L A L + SS+ L+L
Sbjct: 176 LNELEIKALSLRNYQS-----QSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELR 230
Query: 205 GNLFGKTSIPSWVFGLSDLVFLDLSSNI----FRGPI--PDGFKNLTS-LRY-LDLSYNQ 256
+ F S L ++SS + FRG + + F L LRY L+LS +
Sbjct: 231 DTNLAR-------FQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVE 283
Query: 257 FNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQDISEILDI 316
F+ + +F+ E +S +G I+ L + L D+S + +
Sbjct: 284 FDDCTLNGLGDFNPSE---------SDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSL 334
Query: 317 ISACAAFELE--SLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVSGPL---PPASGELS 371
+ +E +FL C S L K+L L LS+N + G
Sbjct: 335 LEKVKRITVENSKVFLVPCSFSQHL-------KSLEFLDLSENLMVEEYLKNSACKGAWP 387
Query: 372 SLTYLDLSNNNLNGM 386
SL L LS N+L M
Sbjct: 388 SLQTLVLSQNHLRSM 402
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 68/145 (46%), Gaps = 4/145 (2%)
Query: 239 DGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKT 298
D F +L SL +LDLS N +S S F L+YL+L N Q + NLT ++T
Sbjct: 68 DAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQT 127
Query: 299 LDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSDNS 358
L + E +I I D + ELE ++ + + L +++H L L +
Sbjct: 128 LRIGNVETFSEIRRI-DFAGLTSLNELE---IKALSLRNYQSQSLKSIRDIHHLTLHLSE 183
Query: 359 VSGPLPPASGELSSLTYLDLSNNNL 383
+ L + LSS+ YL+L + NL
Sbjct: 184 SAFLLEIFADILSSVRYLELRDTNL 208
Score = 32.7 bits (73), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 51/104 (49%), Gaps = 7/104 (6%)
Query: 296 IKTLDLSFNELGQDISEI-LDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLAL 354
+K+LDLSFN+ I+ I + ACA L+ L L+ +I+ + +L L L
Sbjct: 28 MKSLDLSFNK----ITYIGHGDLRACA--NLQVLILKSSRINTIEGDAFYSLGSLEHLDL 81
Query: 355 SDNSVSGPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTEL 398
SDN +S G LSSL YL+L N + F NLT L
Sbjct: 82 SDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNL 125
Score = 29.3 bits (64), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 76/315 (24%), Positives = 124/315 (39%), Gaps = 50/315 (15%)
Query: 91 YIGSMDNLRYLNLSGAGFAGW-IPHQLGNLSNLMHLDLSG--SYYELRVEDISWLAGPSL 147
+ G + +L+YLNL G + + NL+NL L + ++ E+R D AG +
Sbjct: 93 WFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRID---FAGLTS 149
Query: 148 LEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFA---PLASANFSSLNALDLS 204
L L+ + L SL S++ + + L A + + SS+ L+L
Sbjct: 150 LNELEIKALSLRNYQS-----QSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELR 204
Query: 205 GNLFGKTSIPSWVFGLSDLVFLDLSSNI----FRGPI--PDGFKNLTS-LRY-LDLSYNQ 256
+ F S L ++SS + FRG + + F L LRY L+LS +
Sbjct: 205 DTNLAR-------FQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVE 257
Query: 257 FNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQDISEILDI 316
F+ + +F+ E +S +G I+ L + L D+S + +
Sbjct: 258 FDDCTLNGLGDFNPSE---------SDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSL 308
Query: 317 ISACAAFELE--SLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVSGPL---PPASGELS 371
+ +E +FL C S L K+L L LS+N + G
Sbjct: 309 LEKVKRITVENSKVFLVPCSFSQHL-------KSLEFLDLSENLMVEEYLKNSACKGAWP 361
Query: 372 SLTYLDLSNNNLNGM 386
SL L LS N+L M
Sbjct: 362 SLQTLVLSQNHLRSM 376
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 42.7 bits (99), Expect = 9e-04, Method: Composition-based stats.
Identities = 48/164 (29%), Positives = 71/164 (43%), Gaps = 8/164 (4%)
Query: 145 PSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLS 204
P+ E LD L SD L L L L +L + + + L L L+
Sbjct: 34 PADTEKLDLQSTGLATLSD--ATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91
Query: 205 GNLFGKTSIPSWVFG-LSDLVFLDLSSNIFRGPIPDG-FKNLTSLRYLDLSYNQFNSTIS 262
N S+P VF L+ L L L N + +P G F LT L+ L L+ NQ S +
Sbjct: 92 NNQLA--SLPLGVFDHLTQLDKLYLGGNQLKS-LPSGVFDRLTKLKELRLNTNQLQSIPA 148
Query: 263 DCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNEL 306
F +L+ LSL N+LQ ++ + L ++T+ L N+
Sbjct: 149 GAFDKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFGNQF 191
Score = 35.8 bits (81), Expect = 0.097, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 44/71 (61%), Gaps = 2/71 (2%)
Query: 525 FENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILD 584
F++ +QL L +G N+ + ++P+ + +R ++L+ L L +N+L I L++LQ L
Sbjct: 103 FDHLTQLDKLYLGGNQ-LKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLS 161
Query: 585 VAYNRLSGSVP 595
++ N+L SVP
Sbjct: 162 LSTNQLQ-SVP 171
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 57/124 (45%), Gaps = 5/124 (4%)
Query: 197 SLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDG-FKNLTSLRYLDLSYN 255
S + ++ N G TS+P+ + S L+L SN + +P G F LT L L LS N
Sbjct: 6 SCSGTEIRCNSKGLTSVPTGIP--SSATRLELESNKLQS-LPHGVFDKLTQLTKLSLSQN 62
Query: 256 QFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQDISEILD 315
Q S F L L L N+LQ + + + LT +K L L N+L I D
Sbjct: 63 QIQSLPDGVFDKLTKLTILYLHENKLQSLPNGV-FDKLTQLKELALDTNQLKSVPDGIFD 121
Query: 316 IISA 319
+++
Sbjct: 122 RLTS 125
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 74/172 (43%), Gaps = 8/172 (4%)
Query: 145 PSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLS 204
P+ E LD L SD L L L L +L + + + L L L+
Sbjct: 34 PADTEKLDLQSTGLATLSDA--TFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91
Query: 205 GNLFGKTSIPSWVFG-LSDLVFLDLSSNIFRGPIPDG-FKNLTSLRYLDLSYNQFNSTIS 262
N S+P VF L+ L L L N + +P G F LT L+ L L+ NQ S +
Sbjct: 92 NNQLA--SLPLGVFDHLTQLDKLYLGGNQLKS-LPSGVFDRLTKLKELRLNTNQLQSIPA 148
Query: 263 DCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQDISEIL 314
F +L+ LSL N+LQ ++ + L ++T+ L N+ EIL
Sbjct: 149 GAFDKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFGNQFDCSRCEIL 199
Score = 36.6 bits (83), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 58/130 (44%), Gaps = 4/130 (3%)
Query: 178 KLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVF-GLSDLVFLDLSSNIFRGP 236
K C+ + S + LDL G ++ F GL+ L +L+L N +
Sbjct: 17 KEVDCQGKSLDSVPSGIPADTEKLDLQST--GLATLSDATFRGLTKLTWLNLDYNQLQTL 74
Query: 237 IPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFI 296
F +LT L L L+ NQ S F + L+ L LG N+L+ S + + LT +
Sbjct: 75 SAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGV-FDRLTKL 133
Query: 297 KTLDLSFNEL 306
K L L+ N+L
Sbjct: 134 KELRLNTNQL 143
Score = 36.2 bits (82), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 44/71 (61%), Gaps = 2/71 (2%)
Query: 525 FENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILD 584
F++ +QL L +G N+ + ++P+ + +R ++L+ L L +N+L I L++LQ L
Sbjct: 103 FDHLTQLDKLYLGGNQ-LKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLS 161
Query: 585 VAYNRLSGSVP 595
++ N+L SVP
Sbjct: 162 LSTNQLQ-SVP 171
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 72/184 (39%), Gaps = 6/184 (3%)
Query: 174 LKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIF 233
L +L L S L A + L LDLS N ++ P+ GL L L L
Sbjct: 58 LTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGL 117
Query: 234 RGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENL 293
+ P F+ L +L+YL L N + D F + +L +L L NR+ ++ L
Sbjct: 118 QELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRI-SSVPERAFRGL 176
Query: 294 TFIKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLA 353
+ L L N + + L +L+L +S T L + L L
Sbjct: 177 HSLDRLLLHQNRVAHVHPHAFRDLG-----RLMTLYLFANNLSALPTEALAPLRALQYLR 231
Query: 354 LSDN 357
L+DN
Sbjct: 232 LNDN 235
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 72/184 (39%), Gaps = 6/184 (3%)
Query: 174 LKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIF 233
L +L L S L A + L LDLS N ++ P+ GL L L L
Sbjct: 57 LTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGL 116
Query: 234 RGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENL 293
+ P F+ L +L+YL L N + D F + +L +L L NR+ ++ L
Sbjct: 117 QELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRI-SSVPERAFRGL 175
Query: 294 TFIKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLA 353
+ L L N + + L +L+L +S T L + L L
Sbjct: 176 HSLDRLLLHQNRVAHVHPHAFRDLG-----RLMTLYLFANNLSALPTEALAPLRALQYLR 230
Query: 354 LSDN 357
L+DN
Sbjct: 231 LNDN 234
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 41/80 (51%), Gaps = 12/80 (15%)
Query: 244 LTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSF 303
L+ LR L LS+N+ S F DLEYL + +NRLQ IS + +L + LDLSF
Sbjct: 75 LSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQN-ISCCPMASL---RHLDLSF 130
Query: 304 NELGQDISEILDIISACAAF 323
N+ D++ C F
Sbjct: 131 ND--------FDVLPVCKEF 142
Score = 37.7 bits (86), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 118/496 (23%), Positives = 193/496 (38%), Gaps = 64/496 (12%)
Query: 200 ALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNS 259
AL LS N + +P F LS+L L LS N R F L YLD+S+N+ +
Sbjct: 56 ALSLSQNSISELRMPDISF-LSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQN 114
Query: 260 TISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQ-DISEILDIIS 318
IS C L +L L +N NLT + L LS + Q D+ + +
Sbjct: 115 -ISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHL 171
Query: 319 ACAAFELESLFLRGCKI-SGQLTNQLGLFKNLHTLALSDNSVSGPLPPASGELSSLTYLD 377
+C +L S ++G + S Q+ N L H +L V+ +++L +L
Sbjct: 172 SCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNM-------SVNALGHLQ 224
Query: 378 LSNNNLNGMISEIHFGNLTELAFFYANGNSVNFKINSKWVPPFQLLALRLRSCHLGPHFP 437
LSN LN + L+EL N I + W +L
Sbjct: 225 LSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQF------------ 272
Query: 438 SWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSI 497
W + + L+I N I++ I R + Y +T L + ++ N F S
Sbjct: 273 FW---PRPVEYLNIYNLTITERIDREEFT--YSETA------LKSLMIEHVKNQVFLFSK 321
Query: 498 PISMGXXXXXXXXXXXXXXXXGIIPVPFENCSQLVALDMGENEFVGNIPTWMG-ERFSRL 556
I V + S L+ +N F ++ + G RL
Sbjct: 322 EALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSV--FQGCSTLKRL 379
Query: 557 RILNLRSNKLHGIFPIQIC--HLSSLQILDVAYNRLSGSVPKCINNFTAMATIGSHHQVK 614
+ L L+ N L F + + ++SSL+ LDV+ N L SH +
Sbjct: 380 QTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSL-----------------NSHAYDR 422
Query: 615 AIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGEIPMEVTNLKGLQS 674
A E+ ++ S ++ G + + + V+ +D+ NN IP +VT+L+ LQ
Sbjct: 423 TCAWA--ESILVLNLSSNMLTGSV--FRCLPPKVKVLDLH-NNRIMSIPKDVTHLQALQE 477
Query: 675 LNLSHNSFIGKIPETI 690
LN++ N + +P+ +
Sbjct: 478 LNVASNQ-LKSVPDGV 492
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 42/80 (52%), Gaps = 4/80 (5%)
Query: 531 LVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRL 590
++ L++ N G++ + + +++L+L +N++ I P + HL +LQ L+VA N+L
Sbjct: 430 ILVLNLSSNMLTGSVFRCLPPK---VKVLDLHNNRIMSI-PKDVTHLQALQELNVASNQL 485
Query: 591 SGSVPKCINNFTAMATIGSH 610
+ T++ I H
Sbjct: 486 KSVPDGVFDRLTSLQYIWLH 505
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 43/89 (48%), Gaps = 11/89 (12%)
Query: 198 LNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDG-FKNLTSLRYLDLSYNQ 256
+ LDL N SIP V L L L+++SN + +PDG F LTSL+Y+ L N
Sbjct: 452 VKVLDLHNNRI--MSIPKDVTHLQALQELNVASNQLKS-VPDGVFDRLTSLQYIWLHDNP 508
Query: 257 FNSTISDCFSNFDDLEYLSLGYNRLQGTI 285
++ T + YLS N+ G +
Sbjct: 509 WDCTCP-------GIRYLSEWINKHSGVV 530
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 43/111 (38%), Gaps = 21/111 (18%)
Query: 190 LASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRG-------------- 235
L + N SSL LD+S N + ++ L+LSSN+ G
Sbjct: 397 LMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLD 456
Query: 236 -------PIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYN 279
IP +L +L+ L+++ NQ S F L+Y+ L N
Sbjct: 457 LHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDN 507
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 62/140 (44%), Gaps = 27/140 (19%)
Query: 168 INSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGN--------LFGK--------- 210
I LP+++ L L KLH + L ++L L L+GN +F K
Sbjct: 59 IQYLPNVRYLALGGNKLHDISALKE--LTNLTYLILTGNQLQSLPNGVFDKLTNLKELVL 116
Query: 211 -----TSIPSWVFG-LSDLVFLDLSSNIFRGPIPDG-FKNLTSLRYLDLSYNQFNSTISD 263
S+P VF L++L +L L N + +P G F LT+L LDL NQ S
Sbjct: 117 VENQLQSLPDGVFDKLTNLTYLYLYHNQLQS-LPKGVFDKLTNLTRLDLDNNQLQSLPEG 175
Query: 264 CFSNFDDLEYLSLGYNRLQG 283
F L+ LSL N+L+
Sbjct: 176 VFDKLTQLKQLSLNDNQLKS 195
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 52/107 (48%), Gaps = 3/107 (2%)
Query: 220 LSDLVFLDLSSNIFRGPIPDG-FKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGY 278
L++L +L L+ N + +P+G F LT+L+ L L NQ S F +L YL L +
Sbjct: 84 LTNLTYLILTGNQLQS-LPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYH 142
Query: 279 NRLQGTISSIGLENLTFIKTLDLSFNELGQDISEILDIISACAAFEL 325
N+LQ + + LT + LDL N+L + D ++ L
Sbjct: 143 NQLQSLPKGV-FDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSL 188
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 61/139 (43%), Gaps = 9/139 (6%)
Query: 270 DLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQDISEILDIISACAAFELESLF 329
++ YL+LG N+L + L NLT+ L L+ N+L + + D ++ L+ L
Sbjct: 64 NVRYLALGGNKLHDISALKELTNLTY---LILTGNQLQSLPNGVFDKLT-----NLKELV 115
Query: 330 LRGCKISGQLTNQLGLFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMISE 389
L ++ NL L L N + +L++LT LDL NN L +
Sbjct: 116 LVENQLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEG 175
Query: 390 IHFGNLTELAFFYANGNSV 408
+ F LT+L N N +
Sbjct: 176 V-FDKLTQLKQLSLNDNQL 193
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 68/275 (24%), Positives = 106/275 (38%), Gaps = 12/275 (4%)
Query: 196 SSLNALDLSGNLFGKTSIPSWV-FGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSY 254
+S+ L L+ N TS ++ ++L LDLS N F L SLRYL L Y
Sbjct: 222 TSIQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEY 281
Query: 255 NQFNSTISDCFSNFDDLEYLSLGYNRLQGTIS--------SIGLENLTFIKTLDLSFNEL 306
N F +L YLSL + ++S + L +++ L++ N +
Sbjct: 282 NNIQRLSPRSFYGLSNLRYLSLKRAFTKQSVSLASHPNIDDFSFQWLKYLEYLNMDDNNI 341
Query: 307 GQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVSGPLPPA 366
S + + L F ++ + L L TL L+ N +S
Sbjct: 342 PSTKSNTFTGLVSLKYLSLSKTFTSLQTLTNETFVSLA-HSPLLTLNLTKNHISKIANGT 400
Query: 367 SGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNFKINSKW--VPPFQLLA 424
L L LDL N + +S + L + Y + N S + VP Q L
Sbjct: 401 FSWLGQLRILDLGLNEIEQKLSGQEWRGLRNIFEIYLSYNKYLQLSTSSFALVPSLQRLM 460
Query: 425 LRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDI 459
LR + PS ++L+ LD+SN I++I
Sbjct: 461 LRRVALKNVDISPSPFRPLRNLTILDLSNNNIANI 495
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 55/130 (42%), Gaps = 6/130 (4%)
Query: 173 SLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGK--TSIPSWVFGLSDLVFLDLSS 230
SL+ L L S L F+P L AL L+ T W + + L L++
Sbjct: 172 SLRKLDLSSNPLKEFSPGCFQTIGKLFALLLNNAQLNPHLTEKLCWELSNTSIQNLSLAN 231
Query: 231 NIFRGPIPDGFKNL--TSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQ--GTIS 286
N F L T+L LDLSYN + + FS L YLSL YN +Q S
Sbjct: 232 NQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRS 291
Query: 287 SIGLENLTFI 296
GL NL ++
Sbjct: 292 FYGLSNLRYL 301
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 60/249 (24%), Positives = 94/249 (37%), Gaps = 39/249 (15%)
Query: 171 LPSLKVLKLFSCKLHHFAPLASANFSSLNALDL-------SGNLFGKTSIPSWVFG-LSD 222
LPSL+ L L + +P + S+L L L S +L +I + F L
Sbjct: 271 LPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSLKRAFTKQSVSLASHPNIDDFSFQWLKY 330
Query: 223 LVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSY---------------------------- 254
L +L++ N + F L SL+YL LS
Sbjct: 331 LEYLNMDDNNIPSTKSNTFTGLVSLKYLSLSKTFTSLQTLTNETFVSLAHSPLLTLNLTK 390
Query: 255 NQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQDISEIL 314
N + + FS L L LG N ++ +S L I + LS+N+ Q +
Sbjct: 391 NHISKIANGTFSWLGQLRILDLGLNEIEQKLSGQEWRGLRNIFEIYLSYNKYLQLSTSSF 450
Query: 315 DIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVSGPLPPASGELSSLT 374
++ + L + L+ IS L +NL L LS+N+++ L +L
Sbjct: 451 ALVPSLQRLMLRRVALKNVDISPSPFRPL---RNLTILDLSNNNIANINEDLLEGLENLE 507
Query: 375 YLDLSNNNL 383
LD +NNL
Sbjct: 508 ILDFQHNNL 516
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 93/205 (45%), Gaps = 32/205 (15%)
Query: 198 LNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQF 257
L L+L N + S ++VF ++L LDL SN + FKN +L LDLS+N
Sbjct: 75 LKVLNLQHNELSQISDQTFVF-CTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGL 133
Query: 258 NSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTF-----IKTLDLSFNELGQDISE 312
+ST ++L+ L L N+ I ++ E L F ++ LDLS N L +
Sbjct: 134 SSTKLGTGVQLENLQELLLAKNK----ILALRSEELEFLGNSSLRKLDLSSNPLKEFSPG 189
Query: 313 ILDIISACAAFELESLFLRGCKISGQLTNQLGL-----------FKNLHTLALSDNSVSG 361
I +L +L L +++ LT +L N LA S+++ SG
Sbjct: 190 CFQTIG-----KLFALLLNNAQLNPHLTEKLCWELSNTSIQNLSLANNQLLATSESTFSG 244
Query: 362 PLPPASGELSSLTYLDLSNNNLNGM 386
+ ++LT LDLS NNL+ +
Sbjct: 245 ------LKWTNLTQLDLSYNNLHDV 263
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 55/128 (42%), Gaps = 14/128 (10%)
Query: 237 IPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYN---RLQGTISSIGLENL 293
IPD +++ L+L++NQ F+ + L L G+N +L+ + I L
Sbjct: 19 IPDDLP--SNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQI----L 72
Query: 294 TFIKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLA 353
+K L+L NEL Q + + +L S + K S NQ KNL L
Sbjct: 73 PLLKVLNLQHNELSQISDQTFVFCTNLTELDLMSNSIHKIK-SNPFKNQ----KNLIKLD 127
Query: 354 LSDNSVSG 361
LS N +S
Sbjct: 128 LSHNGLSS 135
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Query: 554 SRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCINNFTAMATIG-SHHQ 612
S + +LNL N+L + P S L ILD +N +S P+ + + H++
Sbjct: 25 SNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQHNE 84
Query: 613 VKAIYHASF 621
+ I +F
Sbjct: 85 LSQISDQTF 93
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 51/104 (49%), Gaps = 3/104 (2%)
Query: 187 FAPLAS--ANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNL 244
FA L S ++F+ L L L+ N K ++ +GL+ L+ L+LS N F+NL
Sbjct: 288 FALLKSVFSHFTDLEQLTLAQNEINKIDDNAF-WGLTHLLKLNLSQNFLGSIDSRMFENL 346
Query: 245 TSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSI 288
L LDLSYN + F +L+ L+L N+L+ I
Sbjct: 347 DKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGI 390
Score = 37.7 bits (86), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 57/202 (28%), Positives = 84/202 (41%), Gaps = 24/202 (11%)
Query: 196 SSLNALDLSGNLFGK------------TSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKN 243
+S+ LDLSGN F + T I S + S + F+ P FK
Sbjct: 212 TSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKG 271
Query: 244 LTS--LRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDL 301
L + ++ DLS ++ + + FS+F DLE L+L N + I LT + L+L
Sbjct: 272 LEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEI-NKIDDNAFWGLTHLLKLNL 330
Query: 302 SFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQ--LGLFKNLHTLALSDNSV 359
S N LG S + + + +L +R L +Q LGL NL LAL N +
Sbjct: 331 SQNFLGSIDSRMFENLDKLEVLDLSYNHIRA------LGDQSFLGL-PNLKELALDTNQL 383
Query: 360 SGPLPPASGELSSLTYLDLSNN 381
L+SL + L N
Sbjct: 384 KSVPDGIFDRLTSLQKIWLHTN 405
Score = 33.5 bits (75), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 82/401 (20%), Positives = 146/401 (36%), Gaps = 66/401 (16%)
Query: 247 LRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNEL 306
+ Y+DLS N FS DL++L + I + L+ + L L +N+
Sbjct: 32 VNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF 91
Query: 307 GQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVSGPLPPA 366
Q + + ++ L L G +SG L +L L L DN++ + PA
Sbjct: 92 LQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPL---TSLEMLVLRDNNIK-KIQPA 147
Query: 367 SGELSSLTY--LDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNFKINSKWVPPFQLLA 424
S L+ + LDL+ N + + E + +NF+
Sbjct: 148 SFFLNMRRFHVLDLTFNKVKSICEE----------------DLLNFQGK-------HFTL 184
Query: 425 LRLRSCHLGPHFPSWLHSQK--------HLSKLDISNTRISDIIPRWFWNSIYQDTI--- 473
LRL S L WL +K ++ LD+S + + + F+++I I
Sbjct: 185 LRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSL 244
Query: 474 -------------------PDCW----MNWPDLRVLNLGNNKFTGSIPISMGXXXXXXXX 510
PD + + ++ +L +K +
Sbjct: 245 ILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQL 304
Query: 511 XXXXXXXXGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIF 570
I F + L+ L++ +N F+G+I + M E +L +L+L N + +
Sbjct: 305 TLAQNEINKIDDNAFWGLTHLLKLNLSQN-FLGSIDSRMFENLDKLEVLDLSYNHIRALG 363
Query: 571 PIQICHLSSLQILDVAYNRLSGSVPKCI-NNFTAMATIGSH 610
L +L+ L + N+L SVP I + T++ I H
Sbjct: 364 DQSFLGLPNLKELALDTNQLK-SVPDGIFDRLTSLQKIWLH 403
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 46/96 (47%), Gaps = 8/96 (8%)
Query: 196 SSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSN----IFRGPIPDGFKNLTSLRYLD 251
+ +N +DLS N + + S+ L DL FL + + R + F+ L+SL L
Sbjct: 30 AHVNYVDLSLNSIAELNETSFS-RLQDLQFLKVEQQTPGLVIRN---NTFRGLSSLIILK 85
Query: 252 LSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISS 287
L YNQF + F+ +LE L+L L G + S
Sbjct: 86 LDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLS 121
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 96/402 (23%), Positives = 151/402 (37%), Gaps = 82/402 (20%)
Query: 130 SYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINS----LPSLKVLKLFSCKLH 185
+Y +L + I+ L S D + + + + L++ N+ L SL +LKL +
Sbjct: 33 NYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKL---DYN 89
Query: 186 HFAPLASANFSSLNALDL----SGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGF 241
F L + F+ L L++ NL G ++ L+ L L L N + P F
Sbjct: 90 QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASF 149
Query: 242 -KNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENL------- 293
N+ LDL++N+ S + NF + L +SSI L+++
Sbjct: 150 FLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLL-------RLSSITLQDMNEYWLGW 202
Query: 294 ---------TFIKTLDLSFNELGQDISEILDIISACAAFELESLFL-------------- 330
T I TLDLS N + +++ A A +++SL L
Sbjct: 203 EKCGNPFKNTSITTLDLSGNGFKESMAK--RFFDAIAGTKIQSLILSNSYNMGSSFGHTN 260
Query: 331 ---------RGCKISGQLTNQLGL-------------FKNLHTLALSDNSVSGPLPPASG 368
+G + SG T L F +L L L+ N ++ A
Sbjct: 261 FKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFW 320
Query: 369 ELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNFKINSKW--VPPFQLLALR 426
L+ L L+LS N L G I F NL +L + N + + + +P + LAL
Sbjct: 321 GLTHLLKLNLSQNFL-GSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALD 379
Query: 427 LRSCHLGPH--FPSWLHSQK---HLSKLDISNTRISDIIPRW 463
P F QK H + D S RI D + RW
Sbjct: 380 TNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI-DYLSRW 420
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 67/235 (28%), Positives = 101/235 (42%), Gaps = 38/235 (16%)
Query: 237 IPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLE---NL 293
+PD T++ L+L++NQ + F+ + L L +G+N TIS + E L
Sbjct: 19 VPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFN----TISKLEPELCQKL 72
Query: 294 TFIKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLA 353
+K L+L NEL Q +S+ + C L L L I N KNL TL
Sbjct: 73 PMLKVLNLQHNELSQ-LSD--KTFAFCT--NLTELHLMSNSIQKIKNNPFVKQKNLITLD 127
Query: 354 LSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNFKIN 413
LS N +S +L +L L LSNN + + SE EL F AN + +++
Sbjct: 128 LSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSE-------ELDIF-ANSSLKKLELS 179
Query: 414 SKWVPPF---------QLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDI 459
S + F +L L L + LGP L L+++NT I ++
Sbjct: 180 SNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKL-------CLELANTSIRNL 227
Score = 37.0 bits (84), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 54/120 (45%), Gaps = 5/120 (4%)
Query: 245 TSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFN 304
T+L LDLSYN N +D F+ LEY L YN +Q S L L ++ L+L +
Sbjct: 248 TNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSH-SLHGLFNVRYLNLKRS 306
Query: 305 ELGQDIS----EILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVS 360
Q IS +D S LE L + I G +N NL L+LS++ S
Sbjct: 307 FTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTS 366
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 43/89 (48%), Gaps = 6/89 (6%)
Query: 219 GLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGY 278
GLS L L+L SN F + FK+L L+ +DL N N+ + F+N L+ L+L
Sbjct: 534 GLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQK 593
Query: 279 NRLQGTISSI---GLENLTFIKTLDLSFN 304
N + + NLT LD+ FN
Sbjct: 594 NLITSVEKKVFGPAFRNLT---ELDMRFN 619
Score = 33.1 bits (74), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 75/169 (44%), Gaps = 7/169 (4%)
Query: 219 GLSDLVFLDLSSNI--FRGPIPDGFKNL--TSLRYLDLSYNQFNSTISDCFSNFDDLEYL 274
GL +L +L LS++ R + F +L + L L+L+ N+ + SD FS LE L
Sbjct: 351 GLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVL 410
Query: 275 SLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCK 334
LG N + ++ L I + LS+N+ Q ++ + L + L+
Sbjct: 411 DLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVD 470
Query: 335 ISGQLTNQLGLFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNL 383
S L +NL L LS+N+++ L L LDL +NNL
Sbjct: 471 SSPSPFQPL---RNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNL 516
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 62/219 (28%), Positives = 103/219 (47%), Gaps = 17/219 (7%)
Query: 198 LNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQF 257
L L+L N + S ++ F ++L L L SN + + F +L LDLS+N
Sbjct: 75 LKVLNLQHNELSQLSDKTFAFC-TNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGL 133
Query: 258 NSTISDCFSNFDDLEYLSLGYNRLQGTIS-SIGLENLTFIKTLDLSFNELGQDISEILDI 316
+ST ++L+ L L N++Q S + + + +K L+LS N +I +
Sbjct: 134 SSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSN-------QIKEF 186
Query: 317 ISAC--AAFELESLFLRGCKISGQLTNQLGLF---KNLHTLALSDNSVSGPLPPASGEL- 370
C A L LFL ++ LT +L L ++ L+LS++ +S L
Sbjct: 187 SPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLK 246
Query: 371 -SSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSV 408
++LT LDLS NNLN ++ F L +L +F+ N++
Sbjct: 247 WTNLTMLDLSYNNLN-VVGNDSFAWLPQLEYFFLEYNNI 284
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 67/235 (28%), Positives = 101/235 (42%), Gaps = 38/235 (16%)
Query: 237 IPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLE---NL 293
+PD T++ L+L++NQ + F+ + L L +G+N TIS + E L
Sbjct: 29 VPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFN----TISKLEPELCQKL 82
Query: 294 TFIKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLA 353
+K L+L NEL Q +S+ + C L L L I N KNL TL
Sbjct: 83 PMLKVLNLQHNELSQ-LSD--KTFAFCT--NLTELHLMSNSIQKIKNNPFVKQKNLITLD 137
Query: 354 LSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNFKIN 413
LS N +S +L +L L LSNN + + SE EL F AN + +++
Sbjct: 138 LSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSE-------ELDIF-ANSSLKKLELS 189
Query: 414 SKWVPPF---------QLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDI 459
S + F +L L L + LGP L L+++NT I ++
Sbjct: 190 SNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKL-------CLELANTSIRNL 237
Score = 37.0 bits (84), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 54/120 (45%), Gaps = 5/120 (4%)
Query: 245 TSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFN 304
T+L LDLSYN N +D F+ LEY L YN +Q S L L ++ L+L +
Sbjct: 258 TNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSH-SLHGLFNVRYLNLKRS 316
Query: 305 ELGQDIS----EILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVS 360
Q IS +D S LE L + I G +N NL L+LS++ S
Sbjct: 317 FTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTS 376
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 43/89 (48%), Gaps = 6/89 (6%)
Query: 219 GLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGY 278
GLS L L+L SN F + FK+L L+ +DL N N+ + F+N L+ L+L
Sbjct: 544 GLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQK 603
Query: 279 NRLQGTISSI---GLENLTFIKTLDLSFN 304
N + + NLT LD+ FN
Sbjct: 604 NLITSVEKKVFGPAFRNLT---ELDMRFN 629
Score = 32.7 bits (73), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 75/169 (44%), Gaps = 7/169 (4%)
Query: 219 GLSDLVFLDLSSNI--FRGPIPDGFKNL--TSLRYLDLSYNQFNSTISDCFSNFDDLEYL 274
GL +L +L LS++ R + F +L + L L+L+ N+ + SD FS LE L
Sbjct: 361 GLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVL 420
Query: 275 SLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCK 334
LG N + ++ L I + LS+N+ Q ++ + L + L+
Sbjct: 421 DLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVD 480
Query: 335 ISGQLTNQLGLFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNL 383
S L +NL L LS+N+++ L L LDL +NNL
Sbjct: 481 SSPSPFQPL---RNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNL 526
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 62/219 (28%), Positives = 103/219 (47%), Gaps = 17/219 (7%)
Query: 198 LNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQF 257
L L+L N + S ++ F ++L L L SN + + F +L LDLS+N
Sbjct: 85 LKVLNLQHNELSQLSDKTFAFC-TNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGL 143
Query: 258 NSTISDCFSNFDDLEYLSLGYNRLQGTIS-SIGLENLTFIKTLDLSFNELGQDISEILDI 316
+ST ++L+ L L N++Q S + + + +K L+LS N +I +
Sbjct: 144 SSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSN-------QIKEF 196
Query: 317 ISAC--AAFELESLFLRGCKISGQLTNQLGLF---KNLHTLALSDNSVSGPLPPASGEL- 370
C A L LFL ++ LT +L L ++ L+LS++ +S L
Sbjct: 197 SPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLK 256
Query: 371 -SSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSV 408
++LT LDLS NNLN ++ F L +L +F+ N++
Sbjct: 257 WTNLTMLDLSYNNLN-VVGNDSFAWLPQLEYFFLEYNNI 294
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 67/235 (28%), Positives = 101/235 (42%), Gaps = 38/235 (16%)
Query: 237 IPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLE---NL 293
+PD T++ L+L++NQ + F+ + L L +G+N TIS + E L
Sbjct: 24 VPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFN----TISKLEPELCQKL 77
Query: 294 TFIKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLA 353
+K L+L NEL Q +S+ + C L L L I N KNL TL
Sbjct: 78 PMLKVLNLQHNELSQ-LSD--KTFAFCT--NLTELHLMSNSIQKIKNNPFVKQKNLITLD 132
Query: 354 LSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNFKIN 413
LS N +S +L +L L LSNN + + SE EL F AN + +++
Sbjct: 133 LSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSE-------ELDIF-ANSSLKKLELS 184
Query: 414 SKWVPPF---------QLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDI 459
S + F +L L L + LGP L L+++NT I ++
Sbjct: 185 SNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKL-------CLELANTSIRNL 232
Score = 37.0 bits (84), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 54/120 (45%), Gaps = 5/120 (4%)
Query: 245 TSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFN 304
T+L LDLSYN N +D F+ LEY L YN +Q S L L ++ L+L +
Sbjct: 253 TNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSH-SLHGLFNVRYLNLKRS 311
Query: 305 ELGQDIS----EILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVS 360
Q IS +D S LE L + I G +N NL L+LS++ S
Sbjct: 312 FTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTS 371
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 43/89 (48%), Gaps = 6/89 (6%)
Query: 219 GLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGY 278
GLS L L+L SN F + FK+L L+ +DL N N+ + F+N L+ L+L
Sbjct: 539 GLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQK 598
Query: 279 NRLQGTISSI---GLENLTFIKTLDLSFN 304
N + + NLT LD+ FN
Sbjct: 599 NLITSVEKKVFGPAFRNLT---ELDMRFN 624
Score = 32.7 bits (73), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 75/169 (44%), Gaps = 7/169 (4%)
Query: 219 GLSDLVFLDLSSNI--FRGPIPDGFKNL--TSLRYLDLSYNQFNSTISDCFSNFDDLEYL 274
GL +L +L LS++ R + F +L + L L+L+ N+ + SD FS LE L
Sbjct: 356 GLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVL 415
Query: 275 SLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCK 334
LG N + ++ L I + LS+N+ Q ++ + L + L+
Sbjct: 416 DLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVD 475
Query: 335 ISGQLTNQLGLFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNL 383
S L +NL L LS+N+++ L L LDL +NNL
Sbjct: 476 SSPSPFQPL---RNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNL 521
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 62/219 (28%), Positives = 103/219 (47%), Gaps = 17/219 (7%)
Query: 198 LNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQF 257
L L+L N + S ++ F ++L L L SN + + F +L LDLS+N
Sbjct: 80 LKVLNLQHNELSQLSDKTFAFC-TNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGL 138
Query: 258 NSTISDCFSNFDDLEYLSLGYNRLQGTIS-SIGLENLTFIKTLDLSFNELGQDISEILDI 316
+ST ++L+ L L N++Q S + + + +K L+LS N +I +
Sbjct: 139 SSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSN-------QIKEF 191
Query: 317 ISAC--AAFELESLFLRGCKISGQLTNQLGLF---KNLHTLALSDNSVSGPLPPASGEL- 370
C A L LFL ++ LT +L L ++ L+LS++ +S L
Sbjct: 192 SPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLK 251
Query: 371 -SSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSV 408
++LT LDLS NNLN ++ F L +L +F+ N++
Sbjct: 252 WTNLTMLDLSYNNLN-VVGNDSFAWLPQLEYFFLEYNNI 289
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 519 GIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLS 578
GI P FE S + L +GEN+ + I M +L+ LNL N++ + P HL+
Sbjct: 68 GIEPNAFEGASHIQELQLGENK-IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLN 126
Query: 579 SLQILDVAYN 588
SL L++A N
Sbjct: 127 SLTSLNLASN 136
Score = 29.3 bits (64), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 52/104 (50%), Gaps = 8/104 (7%)
Query: 283 GTISSIGL-ENLTFIKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTN 341
G ISS GL L + L+L N+L + A ++ L L KI +++N
Sbjct: 42 GRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFE-----GASHIQELQLGENKIK-EISN 95
Query: 342 QLGL-FKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLN 384
++ L L TL L DN +S +P + L+SLT L+L++N N
Sbjct: 96 KMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 38.1 bits (87), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 62/117 (52%), Gaps = 6/117 (5%)
Query: 170 SLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDL-VFLDL 228
S P L+VL L C++ A + S L+ L L+GN ++ ++ GLS L + L
Sbjct: 52 SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS-GLSSLQKLVAL 110
Query: 229 SSNIFR-GPIPDGFKNLTSLRYLDLSYNQFNS-TISDCFSNFDDLEYLSLGYNRLQG 283
+N+ P G +L +L+ L++++N S + + FSN +LE+L L N++Q
Sbjct: 111 ETNLASLENFPIG--HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 165
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 30/46 (65%), Gaps = 5/46 (10%)
Query: 666 VTNLKGLQSLNLSHN---SFIGKIPETIGNMRSIESLDLSGNQISG 708
+ +LK L+ LN++HN SF K+PE N+ ++E LDLS N+I
Sbjct: 122 IGHLKTLKELNVAHNLIQSF--KLPEYFSNLTNLEHLDLSSNKIQS 165
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 70/151 (46%), Gaps = 9/151 (5%)
Query: 237 IPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFI 296
IPD S + LDLS+N S F +F +L+ L L +Q TI ++L+ +
Sbjct: 24 IPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHL 80
Query: 297 KTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSD 356
TL L+ N + S L S ++ L+ L ++ +G K L L ++
Sbjct: 81 STLILTGNPIQ---SLALGAFSGLSS--LQKLVALETNLASLENFPIGHLKTLKELNVAH 135
Query: 357 NSV-SGPLPPASGELSSLTYLDLSNNNLNGM 386
N + S LP L++L +LDLS+N + +
Sbjct: 136 NLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 166
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 37.7 bits (86), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Query: 226 LDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTI 285
LDLS F+ L L+ L+L+YN+ N + F D+L+ L+L YN L G +
Sbjct: 271 LDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLL-GEL 329
Query: 286 SSIGLENLTFIKTLDLSFNELG 307
S L + +DL N +
Sbjct: 330 YSSNFYGLPKVAYIDLQKNHIA 351
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 47/101 (46%), Gaps = 15/101 (14%)
Query: 167 VINSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGN---LFGKTSIPSWVFGLSDL 223
V L L+VL L L+ P ++ ++L L L+ N + +P+ +L
Sbjct: 475 VFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPA------NL 528
Query: 224 VFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDC 264
LD+S N P PD F SL LD+++N+F I +C
Sbjct: 529 EILDISRNQLLAPNPDVF---VSLSVLDITHNKF---ICEC 563
Score = 30.4 bits (67), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 40/94 (42%), Gaps = 25/94 (26%)
Query: 167 VINSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFL 226
+LP+L++L L S K++ P D LF + + GLSD V
Sbjct: 68 AFRNLPNLRILDLGSSKIYFLHP------------DAFQGLFHLFELRLYFCGLSDAV-- 113
Query: 227 DLSSNIFRGPIPDG-FKNLTSLRYLDLSYNQFNS 259
+ DG F+NL +L LDLS NQ S
Sbjct: 114 ----------LKDGYFRNLKALTRLDLSKNQIRS 137
Score = 30.0 bits (66), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 30/50 (60%)
Query: 541 FVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRL 590
FV ++ + + E L++LNL NK++ I L +LQ+L+++YN L
Sbjct: 277 FVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLL 326
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 37.4 bits (85), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 63/118 (53%), Gaps = 8/118 (6%)
Query: 170 SLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSW--VFGLSDLVFLD 227
S P L+VL L C++ A + S L+ L L+GN ++ ++ + L LV ++
Sbjct: 52 SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE 111
Query: 228 LS-SNIFRGPIPDGFKNLTSLRYLDLSYNQFNS-TISDCFSNFDDLEYLSLGYNRLQG 283
+ +++ PI +L +L+ L++++N S + + FSN +LE+L L N++Q
Sbjct: 112 TNLASLENFPI----GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 165
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 30/46 (65%), Gaps = 5/46 (10%)
Query: 666 VTNLKGLQSLNLSHN---SFIGKIPETIGNMRSIESLDLSGNQISG 708
+ +LK L+ LN++HN SF K+PE N+ ++E LDLS N+I
Sbjct: 122 IGHLKTLKELNVAHNLIQSF--KLPEYFSNLTNLEHLDLSSNKIQS 165
Score = 34.7 bits (78), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 70/151 (46%), Gaps = 9/151 (5%)
Query: 237 IPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFI 296
IPD S + LDLS+N S F +F +L+ L L +Q TI ++L+ +
Sbjct: 24 IPDNLP--FSTKNLDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHL 80
Query: 297 KTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSD 356
TL L+ N + S L S ++ L+ L ++ +G K L L ++
Sbjct: 81 STLILTGNPIQ---SLALGAFSGLSS--LQKLVAVETNLASLENFPIGHLKTLKELNVAH 135
Query: 357 NSV-SGPLPPASGELSSLTYLDLSNNNLNGM 386
N + S LP L++L +LDLS+N + +
Sbjct: 136 NLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 166
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 37.0 bits (84), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 63/118 (53%), Gaps = 8/118 (6%)
Query: 170 SLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSW--VFGLSDLVFLD 227
S P L+VL L C++ A + S L+ L L+GN ++ ++ + L LV ++
Sbjct: 51 SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE 110
Query: 228 LS-SNIFRGPIPDGFKNLTSLRYLDLSYNQFNS-TISDCFSNFDDLEYLSLGYNRLQG 283
+ +++ PI +L +L+ L++++N S + + FSN +LE+L L N++Q
Sbjct: 111 TNLASLENFPI----GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 164
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 30/46 (65%), Gaps = 5/46 (10%)
Query: 666 VTNLKGLQSLNLSHN---SFIGKIPETIGNMRSIESLDLSGNQISG 708
+ +LK L+ LN++HN SF K+PE N+ ++E LDLS N+I
Sbjct: 121 IGHLKTLKELNVAHNLIQSF--KLPEYFSNLTNLEHLDLSSNKIQS 164
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 70/151 (46%), Gaps = 9/151 (5%)
Query: 237 IPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFI 296
IPD S + LDLS+N S F +F +L+ L L +Q TI ++L+ +
Sbjct: 23 IPDNLP--FSTKNLDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHL 79
Query: 297 KTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSD 356
TL L+ N + S L S ++ L+ L ++ +G K L L ++
Sbjct: 80 STLILTGNPIQ---SLALGAFSGLSS--LQKLVAVETNLASLENFPIGHLKTLKELNVAH 134
Query: 357 NSV-SGPLPPASGELSSLTYLDLSNNNLNGM 386
N + S LP L++L +LDLS+N + +
Sbjct: 135 NLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 165
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 37.0 bits (84), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 50/100 (50%), Gaps = 6/100 (6%)
Query: 212 SIPSWVFGLSDLV-FLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDD 270
SIPS GL++ V LDLS+N + +L+ L L+ N N+ D FS+
Sbjct: 45 SIPS---GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGS 101
Query: 271 LEYLSLGYNRLQGTISS--IGLENLTFIKTLDLSFNELGQ 308
LE+L L YN L SS L +LTF+ L + LG+
Sbjct: 102 LEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGE 141
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 37.0 bits (84), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 62/117 (52%), Gaps = 6/117 (5%)
Query: 170 SLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDL-VFLDL 228
S P L+VL L C++ A + S L+ L L+GN ++ ++ GLS L + +
Sbjct: 51 SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS-GLSSLQKLVAV 109
Query: 229 SSNIFR-GPIPDGFKNLTSLRYLDLSYNQFNS-TISDCFSNFDDLEYLSLGYNRLQG 283
+N+ P G +L +L+ L++++N S + + FSN +LE+L L N++Q
Sbjct: 110 ETNLASLENFPIG--HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 164
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 30/46 (65%), Gaps = 5/46 (10%)
Query: 666 VTNLKGLQSLNLSHN---SFIGKIPETIGNMRSIESLDLSGNQISG 708
+ +LK L+ LN++HN SF K+PE N+ ++E LDLS N+I
Sbjct: 121 IGHLKTLKELNVAHNLIQSF--KLPEYFSNLTNLEHLDLSSNKIQS 164
Score = 34.7 bits (78), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 70/151 (46%), Gaps = 9/151 (5%)
Query: 237 IPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFI 296
IPD S + LDLS+N S F +F +L+ L L +Q TI ++L+ +
Sbjct: 23 IPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHL 79
Query: 297 KTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSD 356
TL L+ N + S L S ++ L+ L ++ +G K L L ++
Sbjct: 80 STLILTGNPIQ---SLALGAFSGLSS--LQKLVAVETNLASLENFPIGHLKTLKELNVAH 134
Query: 357 NSV-SGPLPPASGELSSLTYLDLSNNNLNGM 386
N + S LP L++L +LDLS+N + +
Sbjct: 135 NLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 165
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 37.0 bits (84), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 60/138 (43%), Gaps = 15/138 (10%)
Query: 196 SSLNALDLSGNLFGK------------TSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKN 243
+S+ LDLSGN F + T I S + S + F+ P FK
Sbjct: 212 TSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKG 271
Query: 244 LTS--LRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDL 301
L + ++ DLS ++ + + FS+F DLE L+L N + I LT +K L L
Sbjct: 272 LEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEI-NKIDDNAFWGLTHLKELAL 330
Query: 302 SFNELGQDISEILDIISA 319
N+L I D +++
Sbjct: 331 DTNQLKSVPDGIFDRLTS 348
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 60/145 (41%), Gaps = 6/145 (4%)
Query: 247 LRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNEL 306
+ Y+DLS N FS DL++L + I + L+ + L L +N+
Sbjct: 32 VNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF 91
Query: 307 GQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVSGPLPPA 366
Q + + ++ L L G +SG L +L L L DN++ + PA
Sbjct: 92 LQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPL---TSLEMLVLRDNNIK-KIQPA 147
Query: 367 SGELSSLTY--LDLSNNNLNGMISE 389
S L+ + LDL+ N + + E
Sbjct: 148 SFFLNMRRFHVLDLTFNKVKSICEE 172
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 46/96 (47%), Gaps = 8/96 (8%)
Query: 196 SSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSN----IFRGPIPDGFKNLTSLRYLD 251
+ +N +DLS N + + S+ L DL FL + + R + F+ L+SL L
Sbjct: 30 AHVNYVDLSLNSIAELNETSFS-RLQDLQFLKVEQQTPGLVIRN---NTFRGLSSLIILK 85
Query: 252 LSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISS 287
L YNQF + F+ +LE L+L L G + S
Sbjct: 86 LDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLS 121
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 73/308 (23%), Positives = 118/308 (38%), Gaps = 51/308 (16%)
Query: 131 YYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINS----LPSLKVLKLFSCKLHH 186
Y +L + I+ L S D + + + + L++ N+ L SL +LKL +
Sbjct: 34 YVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKL---DYNQ 90
Query: 187 FAPLASANFSSLNALDL----SGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGF- 241
F L + F+ L L++ NL G ++ L+ L L L N + P F
Sbjct: 91 FLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFF 150
Query: 242 KNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENL-------- 293
N+ LDL++N+ S + NF + L +SSI L+++
Sbjct: 151 LNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLL-------RLSSITLQDMNEYWLGWE 203
Query: 294 --------TFIKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGL 345
T I TLDLS N + +++ A A +++SL L G
Sbjct: 204 KCGNPFKNTSITTLDLSGNGFKESMAK--RFFDAIAGTKIQSLILSNSYNMGSSFGHTNF 261
Query: 346 -------FKNLH-----TLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMISEIHFG 393
FK L T LS + + L + L L L+ N +N + +G
Sbjct: 262 KDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWG 321
Query: 394 --NLTELA 399
+L ELA
Sbjct: 322 LTHLKELA 329
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 37.0 bits (84), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 58/125 (46%), Gaps = 11/125 (8%)
Query: 177 LKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGP 236
L+L ++ PL N + + L+LSGN S + GL + LDL+S
Sbjct: 74 LELKDNQITDLTPLK--NLTKITELELSGNPLKNVS---AIAGLQSIKTLDLTSTQITDV 128
Query: 237 IP-DGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTF 295
P G NL L YLDL NQ + IS + +L+YLS+G N++ L LT
Sbjct: 129 TPLAGLSNLQVL-YLDL--NQI-TNIS-PLAGLTNLQYLSIGNNQVNDLTPLANLSKLTT 183
Query: 296 IKTLD 300
++ D
Sbjct: 184 LRADD 188
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 58/120 (48%), Gaps = 16/120 (13%)
Query: 290 LENLTFIKTLDLSFNELGQDISEILDIISACAAFE-LESLFLRGCKISGQLTNQLGLFKN 348
L+NLT I L+LS N L +SA A + +++L L +I+ L N
Sbjct: 87 LKNLTKITELELSGNPLKN--------VSAIAGLQSIKTLDLTSTQITD--VTPLAGLSN 136
Query: 349 LHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSV 408
L L L N ++ + P +G L++L YL + NN +N + NL++L A+ N +
Sbjct: 137 LQVLYLDLNQITN-ISPLAG-LTNLQYLSIGNNQVNDLTP---LANLSKLTTLRADDNKI 191
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 37.0 bits (84), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 62/117 (52%), Gaps = 6/117 (5%)
Query: 170 SLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDL-VFLDL 228
S P L+VL L C++ A + S L+ L L+GN ++ ++ GLS L + +
Sbjct: 50 SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS-GLSSLQKLVAV 108
Query: 229 SSNIFR-GPIPDGFKNLTSLRYLDLSYNQFNS-TISDCFSNFDDLEYLSLGYNRLQG 283
+N+ P G +L +L+ L++++N S + + FSN +LE+L L N++Q
Sbjct: 109 ETNLASLENFPIG--HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 30/46 (65%), Gaps = 5/46 (10%)
Query: 666 VTNLKGLQSLNLSHN---SFIGKIPETIGNMRSIESLDLSGNQISG 708
+ +LK L+ LN++HN SF K+PE N+ ++E LDLS N+I
Sbjct: 120 IGHLKTLKELNVAHNLIQSF--KLPEYFSNLTNLEHLDLSSNKIQS 163
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 70/151 (46%), Gaps = 9/151 (5%)
Query: 237 IPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFI 296
IPD S + LDLS+N S F +F +L+ L L +Q TI ++L+ +
Sbjct: 22 IPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHL 78
Query: 297 KTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSD 356
TL L+ N + S L S ++ L+ L ++ +G K L L ++
Sbjct: 79 STLILTGNPIQ---SLALGAFSGLSS--LQKLVAVETNLASLENFPIGHLKTLKELNVAH 133
Query: 357 NSV-SGPLPPASGELSSLTYLDLSNNNLNGM 386
N + S LP L++L +LDLS+N + +
Sbjct: 134 NLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 36.6 bits (83), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 50/100 (50%), Gaps = 6/100 (6%)
Query: 212 SIPSWVFGLSDLVF-LDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDD 270
SIPS GL++ V LDLS+N + +L+ L L+ N N+ D FS+
Sbjct: 19 SIPS---GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGS 75
Query: 271 LEYLSLGYNRLQGTISS--IGLENLTFIKTLDLSFNELGQ 308
LE+L L YN L SS L +LTF+ L + LG+
Sbjct: 76 LEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGE 115
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 36.6 bits (83), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 60/223 (26%), Positives = 80/223 (35%), Gaps = 34/223 (15%)
Query: 237 IPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFI 296
+P G + T RYL+L N +D F + LE L LG N ++ I L +
Sbjct: 69 VPQGIPSNT--RYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASL 125
Query: 297 KTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSD 356
TL+L N L S + +S +L L+LR I + +L L L
Sbjct: 126 NTLELFDNWLTVIPSGAFEYLS-----KLRELWLRNNPIESIPSYAFNRVPSLMRLDL-- 178
Query: 357 NSVSGPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNFKINSKW 416
GEL L Y ISE F L L Y N N K
Sbjct: 179 -----------GELKKLEY-----------ISEGAFEGLFNLK--YLNLGMCNIKDMPNL 214
Query: 417 VPPFQLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDI 459
P L L + H P H L KL + N+++S I
Sbjct: 215 TPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLI 257
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 35.8 bits (81), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 58/125 (46%), Gaps = 11/125 (8%)
Query: 177 LKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGP 236
L+L ++ APL N + + L+LSGN S + GL + LDL+S
Sbjct: 68 LELKDNQITDLAPLK--NLTKITELELSGNPLKNVS---AIAGLQSIKTLDLTSTQITDV 122
Query: 237 IP-DGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTF 295
P G NL L YLDL NQ + IS + +L+YLS+G ++ L LT
Sbjct: 123 TPLAGLSNLQVL-YLDL--NQI-TNIS-PLAGLTNLQYLSIGNAQVSDLTPLANLSKLTT 177
Query: 296 IKTLD 300
+K D
Sbjct: 178 LKADD 182
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 53/114 (46%), Gaps = 1/114 (0%)
Query: 201 LDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNST 260
LDLS N + L++L L LS N + F + +LRYLDLS N ++
Sbjct: 44 LDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTL 103
Query: 261 ISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQDISEIL 314
FS+ LE L L YN + E++ ++ L LS N++ + E++
Sbjct: 104 DEFLFSDLQALEVLLL-YNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELI 156
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 363 LPPASGELSSLT-YLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNFKINSKWVPPFQ 421
LP L S T LDLS+NNL+ + +E LT L + N +NF + +VP
Sbjct: 30 LPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPN 89
Query: 422 LLALRLRSCHL 432
L L L S HL
Sbjct: 90 LRYLDLSSNHL 100
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 61/143 (42%), Gaps = 16/143 (11%)
Query: 348 NLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNS 407
NLH+L LS N ++ A + +L YLDLS+N+L+ + E F +L L N
Sbjct: 65 NLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTL-DEFLFSDLQALEVLLLYNNH 123
Query: 408 VNFKINSKWVPPFQLLALRLRSCHLGPHFPSWL----HSQKHLSKLDISNTRISDI---- 459
+ + + QL L L + FP L + L LD+S+ ++ +
Sbjct: 124 IVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTD 182
Query: 460 ---IPRWFWNSIYQDTIP---DC 476
+P W N +Y P DC
Sbjct: 183 LQKLPAWVKNGLYLHNNPLECDC 205
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 48/114 (42%)
Query: 168 INSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLD 227
S +L +L L S L A + L LDLS N + P+ GL L L
Sbjct: 51 FQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLH 110
Query: 228 LSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRL 281
L + P F+ L +L+YL L N + + F + +L +L L NR+
Sbjct: 111 LDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRI 164
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 57/163 (34%), Gaps = 50/163 (30%)
Query: 167 VINSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVF-------- 218
N LPSL L+LF +L A S L L L N SIPS+ F
Sbjct: 78 AFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPI--ESIPSYAFNRVPSLRR 135
Query: 219 ------------------GLSDLVF----------------------LDLSSNIFRGPIP 238
GL +L + L+LS N P
Sbjct: 136 LDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRP 195
Query: 239 DGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRL 281
F+ LTSLR L L + Q + + F + LE L+L +N L
Sbjct: 196 GSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNL 238
Score = 33.1 bits (74), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 46/109 (42%), Gaps = 3/109 (2%)
Query: 171 LPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSS 230
L +L+ L L C L L + L L+LSGN P GL+ L L L
Sbjct: 155 LVNLRYLNLGMCNLKDIPNLTA--LVRLEELELSGNRLDLIR-PGSFQGLTSLRKLWLMH 211
Query: 231 NIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYN 279
+ F +L SL L+LS+N S D F+ LE + L +N
Sbjct: 212 AQVATIERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRLERVHLNHN 260
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 74/184 (40%), Gaps = 26/184 (14%)
Query: 525 FENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILD 584
F L L++ +N +PT E S+LR L LR+N + I + SL+ LD
Sbjct: 79 FNGLPSLNTLELFDNRLT-TVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLD 137
Query: 585 VAYNRLSGSVPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSI 644
+G +++ I A+FE + ++L M + + ++
Sbjct: 138 ----------------------LGELKRLEYISEAAFEGLVNLRYLNLGMCN-LKDIPNL 174
Query: 645 LNLVR--SIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLS 702
LVR +++S N P L L+ L L H +++S+E L+LS
Sbjct: 175 TALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLS 234
Query: 703 GNQI 706
N +
Sbjct: 235 HNNL 238
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 61/154 (39%), Gaps = 7/154 (4%)
Query: 248 RYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELG 307
RYL+L N +D F + LE L L N L I L + TL+L N L
Sbjct: 38 RYLNLQENSIQVIRTDTFKHLRHLEILQLSKN-LVRKIEVGAFNGLPSLNTLELFDNRLT 96
Query: 308 QDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVSGPLPPAS 367
++ + +S +L L+LR I + +L L L + + A+
Sbjct: 97 TVPTQAFEYLS-----KLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAA 151
Query: 368 GE-LSSLTYLDLSNNNLNGMISEIHFGNLTELAF 400
E L +L YL+L NL + + L EL
Sbjct: 152 FEGLVNLRYLNLGMCNLKDIPNLTALVRLEELEL 185
Score = 29.6 bits (65), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 60/236 (25%), Positives = 89/236 (37%), Gaps = 46/236 (19%)
Query: 225 FLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGT 284
+L+L N + D FK+L L L LS N F+ L L L NRL T
Sbjct: 39 YLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLT-T 97
Query: 285 ISSIGLENLTFIKTLDL-----------SFNELGQ----DISEI--LDIISACAAFE--- 324
+ + E L+ ++ L L +FN + D+ E+ L+ IS AAFE
Sbjct: 98 VPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISE-AAFEGLV 156
Query: 325 -----------------------LESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVSG 361
LE L L G ++ +L L L V+
Sbjct: 157 NLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVAT 216
Query: 362 PLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNFKINSKWV 417
A +L SL L+LS+NNL + ++ F L L + N N + + W+
Sbjct: 217 IERNAFDDLKSLEELNLSHNNLMSLPHDL-FTPLHRLERVHLNHNPWHCNCDVLWL 271
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 34.3 bits (77), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 73/297 (24%), Positives = 117/297 (39%), Gaps = 42/297 (14%)
Query: 221 SDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNR 280
++ LDL N + D F + L L+L+ N ++ F+N +L L L NR
Sbjct: 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91
Query: 281 LQGTISSI--GLENLT--------FIKTLDLSFNELGQDIS-EILD---IISACAAF--- 323
L+ + GL NLT + LD F +L S E+ D + + AF
Sbjct: 92 LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGL 151
Query: 324 -ELESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSN-N 381
LE L L C ++ T L L L L +++ + L L L++S+
Sbjct: 152 NSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWP 211
Query: 382 NLNGMISEIHFG-NLTELAFFYANGNSVNFKINSKWVPPFQLLALRLRSCHLGPHFP--- 437
L+ M +G NLT L+ + N +V ++ L+ LR + P
Sbjct: 212 YLDTMTPNCLYGLNLTSLSITHCNLTAV------PYLAVRHLVYLRFLNLSYNPISTIEG 265
Query: 438 SWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFT 494
S LH L ++ + +++ + P F Y LRVLN+ N+ T
Sbjct: 266 SMLHELLRLQEIQLVGGQLAVVEPYAFRGLNY-------------LRVLNVSGNQLT 309
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 57/163 (34%), Gaps = 50/163 (30%)
Query: 167 VINSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVF-------- 218
N LPSL L+LF +L A S L L L N SIPS+ F
Sbjct: 78 AFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPI--ESIPSYAFNRVPSLRR 135
Query: 219 ------------------GLSDLVF----------------------LDLSSNIFRGPIP 238
GL +L + L+LS N P
Sbjct: 136 LDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRP 195
Query: 239 DGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRL 281
F+ LTSLR L L + Q + + F + LE L+L +N L
Sbjct: 196 GSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNL 238
Score = 32.7 bits (73), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 46/109 (42%), Gaps = 3/109 (2%)
Query: 171 LPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSS 230
L +L+ L L C L L + L L+LSGN P GL+ L L L
Sbjct: 155 LVNLRYLNLGMCNLKDIPNLTA--LVRLEELELSGNRLDLIR-PGSFQGLTSLRKLWLMH 211
Query: 231 NIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYN 279
+ F +L SL L+LS+N S D F+ LE + L +N
Sbjct: 212 AQVATIERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRLERVHLNHN 260
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 61/154 (39%), Gaps = 7/154 (4%)
Query: 248 RYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELG 307
RYL+L N +D F + LE L L N L I L + TL+L N L
Sbjct: 38 RYLNLQENSIQVIRTDTFKHLRHLEILQLSKN-LVRKIEVGAFNGLPSLNTLELFDNRLT 96
Query: 308 QDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVSGPLPPAS 367
++ + +S +L L+LR I + +L L L + + A+
Sbjct: 97 TVPTQAFEYLS-----KLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAA 151
Query: 368 GE-LSSLTYLDLSNNNLNGMISEIHFGNLTELAF 400
E L +L YL+L NL + + L EL
Sbjct: 152 FEGLVNLRYLNLGMCNLKDIPNLTALVRLEELEL 185
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 74/184 (40%), Gaps = 26/184 (14%)
Query: 525 FENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILD 584
F L L++ +N +PT E S+LR L LR+N + I + SL+ LD
Sbjct: 79 FNGLPSLNTLELFDNRLT-TVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLD 137
Query: 585 VAYNRLSGSVPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSI 644
+G +++ I A+FE + ++L M + + ++
Sbjct: 138 ----------------------LGELKRLEYISEAAFEGLVNLRYLNLGMCN-LKDIPNL 174
Query: 645 LNLVR--SIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLS 702
LVR +++S N P L L+ L L H +++S+E L+LS
Sbjct: 175 TALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLS 234
Query: 703 GNQI 706
N +
Sbjct: 235 HNNL 238
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 60/236 (25%), Positives = 89/236 (37%), Gaps = 46/236 (19%)
Query: 225 FLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGT 284
+L+L N + D FK+L L L LS N F+ L L L NRL T
Sbjct: 39 YLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRL-TT 97
Query: 285 ISSIGLENLTFIKTLDL-----------SFNELGQ----DISEI--LDIISACAAFE--- 324
+ + E L+ ++ L L +FN + D+ E+ L+ IS AAFE
Sbjct: 98 VPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISE-AAFEGLV 156
Query: 325 -----------------------LESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVSG 361
LE L L G ++ +L L L V+
Sbjct: 157 NLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVAT 216
Query: 362 PLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNFKINSKWV 417
A +L SL L+LS+NNL + ++ F L L + N N + + W+
Sbjct: 217 IERNAFDDLKSLEELNLSHNNLMSLPHDL-FTPLHRLERVHLNHNPWHCNCDVLWL 271
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 33.5 bits (75), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 59/146 (40%), Gaps = 5/146 (3%)
Query: 198 LNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQF 257
+ L L GN F T +P + L +DLS+N F N+T L L LSYN+
Sbjct: 33 VTELYLDGNQF--TLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90
Query: 258 NSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQDISEILDII 317
F L LSL N + + +L+ + L + N L D + + +
Sbjct: 91 RCIPPRTFDGLKSLRLLSLHGNDI-SVVPEGAFNDLSALSHLAIGANPLYCDCN--MQWL 147
Query: 318 SACAAFELESLFLRGCKISGQLTNQL 343
S E + + C G++ ++L
Sbjct: 148 SDWVKSEYKEPGIARCAGPGEMADKL 173
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 28/57 (49%)
Query: 651 IDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQIS 707
ID+S N S +N+ L +L LS+N P T ++S+ L L GN IS
Sbjct: 59 IDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS 115
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 33.1 bits (74), Expect = 0.58, Method: Composition-based stats.
Identities = 36/111 (32%), Positives = 47/111 (42%), Gaps = 4/111 (3%)
Query: 167 VINSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFG-LSDLVF 225
V +SL +LK L L S +L + + L LDL N T +PS VF L L
Sbjct: 59 VFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQL--TVLPSAVFDRLVHLKE 116
Query: 226 LDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSL 276
L + N +P G + LT L +L L NQ S F L + L
Sbjct: 117 LFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYL 166
Score = 30.4 bits (67), Expect = 3.8, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 4/78 (5%)
Query: 519 GIIPVP-FENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHL 577
G +PV F++ +QL LD+G N+ +P+ + +R L+ L + NKL + P I L
Sbjct: 77 GALPVGVFDSLTQLTVLDLGTNQLT-VLPSAVFDRLVHLKELFMCCNKLTEL-PRGIERL 134
Query: 578 SSLQILDVAYNRLSGSVP 595
+ L L + N+L S+P
Sbjct: 135 THLTHLALDQNQLK-SIP 151
Score = 29.3 bits (64), Expect = 8.9, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Query: 238 PDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIK 297
P F +L +L+ L L NQ + F + L L LG N+L S++ + L +K
Sbjct: 57 PGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAV-FDRLVHLK 115
Query: 298 TLDLSFNELGQ 308
L + N+L +
Sbjct: 116 ELFMCCNKLTE 126
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 33.1 bits (74), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 46/109 (42%), Gaps = 3/109 (2%)
Query: 171 LPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSS 230
L +L+ L L C L L L+ LDLSGN P GL L L +
Sbjct: 184 LSNLRYLNLAMCNLREIPNLTP--LIKLDELDLSGNHLSAIR-PGSFQGLMHLQKLWMIQ 240
Query: 231 NIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYN 279
+ + + F NL SL ++L++N D F+ LE + L +N
Sbjct: 241 SQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 52/114 (45%), Gaps = 4/114 (3%)
Query: 169 NSLPSLKVLKLFSCK-LHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLD 227
N +PSL+ L L K L + + A S+L L+L+ + IP+ + L L LD
Sbjct: 157 NRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLA--MCNLREIPN-LTPLIKLDELD 213
Query: 228 LSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRL 281
LS N P F+ L L+ L + +Q + F N L ++L +N L
Sbjct: 214 LSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNL 267
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 32.7 bits (73), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 46/113 (40%), Gaps = 3/113 (2%)
Query: 197 SLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLS-SNIFRGPIPDGFKNLTSLRYLDLSYN 255
SL LDLS N G + + GL +L LD S + R F +L L YLD+SY
Sbjct: 372 SLRHLDLSFN--GAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYT 429
Query: 256 QFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQ 308
F L L + N + S N T + LDLS +L Q
Sbjct: 430 NTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQ 482
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 114/510 (22%), Positives = 199/510 (39%), Gaps = 105/510 (20%)
Query: 92 IGSMDNLRYLNLSGAGF-AGWIPHQLGNLSNLMHLDLSGSYYE-LRVEDISWL-AGPSLL 148
IG + L+ LN++ + +P NL+NL+H+DLS +Y + + V D+ +L P +
Sbjct: 119 IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVN 178
Query: 149 EHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLF 208
LD S +N + ++ KLH NF+S N +
Sbjct: 179 LSLDMS-------------LNPIDFIQDQAFQGIKLHELT--LRGNFNSSNIMKTCLQNL 223
Query: 209 GKTSIPSWVFGLSDLVFLDLSS-NIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSN 267
+ + G F D + IF I +G D++ ++F T ++ FS+
Sbjct: 224 AGLHVHRLILG----EFKDERNLEIFEPSIMEGL--------CDVTIDEFRLTYTNDFSD 271
Query: 268 FDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQDISEILDIISACAAFELES 327
D +++ L +S++ L ++ IK L +D+ + F+ +S
Sbjct: 272 -DIVKFHCL------ANVSAMSLAGVS-IKYL--------EDVPK---------HFKWQS 306
Query: 328 LFLRGCKISGQLTNQLGLFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNL--NG 385
L + C++ T L K+L TL ++ S+S L SL+YLDLS N L +G
Sbjct: 307 LSIIRCQLKQFPTLDLPFLKSL-TLTMNKGSISF----KKVALPSLSYLDLSRNALSFSG 361
Query: 386 MISEIHFGNLTELAFFYANGNSVNFKINSKWVPPFQLLALRLRSCHLGPHFPSWLHSQKH 445
S G + + ++ N + Q L + + F ++L +K
Sbjct: 362 CCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEK- 420
Query: 446 LSKLDIS--NTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGX 503
L LDIS NT+I ++ I+ + L L + N F
Sbjct: 421 LLYLDISYTNTKID-------FDGIF--------LGLTSLNTLKMAGNSFKD-------- 457
Query: 504 XXXXXXXXXXXXXXXGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRS 563
+ F N + L LD+ + + + I + + RL++LN+
Sbjct: 458 ---------------NTLSNVFANTTNLTFLDLSKCQ-LEQISWGVFDTLHRLQLLNMSH 501
Query: 564 NKLHGIFPIQICHLSSLQILDVAYNRLSGS 593
N L + L SL LD ++NR+ S
Sbjct: 502 NNLLFLDSSHYNQLYSLSTLDCSFNRIETS 531
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 55/135 (40%), Gaps = 11/135 (8%)
Query: 170 SLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLS 229
S LK+LK +S +NFS L LDLS +W GL L L L+
Sbjct: 35 SFNPLKILKSYSF----------SNFSELQWLDLSRCEIETIEDKAW-HGLHHLSNLILT 83
Query: 230 SNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIG 289
N + P F LTSL L + S S L+ L++ +N +
Sbjct: 84 GNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAY 143
Query: 290 LENLTFIKTLDLSFN 304
NLT + +DLS+N
Sbjct: 144 FSNLTNLVHVDLSYN 158
Score = 29.6 bits (65), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 73/160 (45%), Gaps = 10/160 (6%)
Query: 235 GPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLT 294
+PD +S + +DLS+N S FSNF +L++L L ++ TI L
Sbjct: 19 SKVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIE-TIEDKAWHGLH 75
Query: 295 FIKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLAL 354
+ L L+ N + Q S S LE+L K++ + +G L L +
Sbjct: 76 HLSNLILTGNPI-QSFSP----GSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNV 130
Query: 355 SDNSV-SGPLPPASGELSSLTYLDLSNNNLNGM-ISEIHF 392
+ N + S LP L++L ++DLS N + + ++++ F
Sbjct: 131 AHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQF 170
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 32.7 bits (73), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 46/113 (40%), Gaps = 3/113 (2%)
Query: 197 SLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLS-SNIFRGPIPDGFKNLTSLRYLDLSYN 255
SL LDLS N G + + GL +L LD S + R F +L L YLD+SY
Sbjct: 377 SLRHLDLSFN--GAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYT 434
Query: 256 QFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQ 308
F L L + N + S N T + LDLS +L Q
Sbjct: 435 NTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQ 487
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 114/510 (22%), Positives = 199/510 (39%), Gaps = 105/510 (20%)
Query: 92 IGSMDNLRYLNLSGAGF-AGWIPHQLGNLSNLMHLDLSGSYYE-LRVEDISWL-AGPSLL 148
IG + L+ LN++ + +P NL+NL+H+DLS +Y + + V D+ +L P +
Sbjct: 124 IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVN 183
Query: 149 EHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLF 208
LD S +N + ++ KLH NF+S N +
Sbjct: 184 LSLDMS-------------LNPIDFIQDQAFQGIKLHELT--LRGNFNSSNIMKTCLQNL 228
Query: 209 GKTSIPSWVFGLSDLVFLDLSS-NIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSN 267
+ + G F D + IF I +G D++ ++F T ++ FS+
Sbjct: 229 AGLHVHRLILG----EFKDERNLEIFEPSIMEGL--------CDVTIDEFRLTYTNDFSD 276
Query: 268 FDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQDISEILDIISACAAFELES 327
D +++ L +S++ L ++ IK L +D+ + F+ +S
Sbjct: 277 -DIVKFHCL------ANVSAMSLAGVS-IKYL--------EDVPK---------HFKWQS 311
Query: 328 LFLRGCKISGQLTNQLGLFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNL--NG 385
L + C++ T L K+L TL ++ S+S L SL+YLDLS N L +G
Sbjct: 312 LSIIRCQLKQFPTLDLPFLKSL-TLTMNKGSISF----KKVALPSLSYLDLSRNALSFSG 366
Query: 386 MISEIHFGNLTELAFFYANGNSVNFKINSKWVPPFQLLALRLRSCHLGPHFPSWLHSQKH 445
S G + + ++ N + Q L + + F ++L +K
Sbjct: 367 CCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEK- 425
Query: 446 LSKLDIS--NTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGX 503
L LDIS NT+I ++ I+ + L L + N F
Sbjct: 426 LLYLDISYTNTKID-------FDGIF--------LGLTSLNTLKMAGNSFKD-------- 462
Query: 504 XXXXXXXXXXXXXXXGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRS 563
+ F N + L LD+ + + + I + + RL++LN+
Sbjct: 463 ---------------NTLSNVFANTTNLTFLDLSKCQ-LEQISWGVFDTLHRLQLLNMSH 506
Query: 564 NKLHGIFPIQICHLSSLQILDVAYNRLSGS 593
N L + L SL LD ++NR+ S
Sbjct: 507 NNLLFLDSSHYNQLYSLSTLDCSFNRIETS 536
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 55/135 (40%), Gaps = 11/135 (8%)
Query: 170 SLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLS 229
S LK+LK +S +NFS L LDLS +W GL L L L+
Sbjct: 40 SFNPLKILKSYSF----------SNFSELQWLDLSRCEIETIEDKAW-HGLHHLSNLILT 88
Query: 230 SNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIG 289
N + P F LTSL L + S S L+ L++ +N +
Sbjct: 89 GNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAY 148
Query: 290 LENLTFIKTLDLSFN 304
NLT + +DLS+N
Sbjct: 149 FSNLTNLVHVDLSYN 163
Score = 29.6 bits (65), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 73/160 (45%), Gaps = 10/160 (6%)
Query: 235 GPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLT 294
+PD +S + +DLS+N S FSNF +L++L L ++ TI L
Sbjct: 24 SKVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIE-TIEDKAWHGLH 80
Query: 295 FIKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLAL 354
+ L L+ N + Q S S LE+L K++ + +G L L +
Sbjct: 81 HLSNLILTGNPI-QSFSP----GSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNV 135
Query: 355 SDNSV-SGPLPPASGELSSLTYLDLSNNNLNGM-ISEIHF 392
+ N + S LP L++L ++DLS N + + ++++ F
Sbjct: 136 AHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQF 175
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 32.7 bits (73), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Query: 238 PDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIK 297
P F +LT L YL+L+ NQ + F L +L+L N+L+ + +NL +
Sbjct: 57 PGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTHLALHINQLKSIPMGV-FDNLKSLT 115
Query: 298 TLDLSFNELGQDISEIL 314
+ L N + S+IL
Sbjct: 116 HIYLFNNPWDCECSDIL 132
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 32.7 bits (73), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 70/279 (25%), Positives = 112/279 (40%), Gaps = 66/279 (23%)
Query: 79 SGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHLDLSGSYYELRVED 138
+G IQ EY + NL YLNL+G P L NL L +L + + ++ D
Sbjct: 52 AGEKVASIQGIEY---LTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTN----KITD 102
Query: 139 ISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKL---HHFAPLAS-AN 194
IS L + L L ++ ++ S P + K +S L H+ + L+ +N
Sbjct: 103 ISALQNLTNLRELYLNEDNISDIS---------PLANLTKXYSLNLGANHNLSDLSPLSN 153
Query: 195 FSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSY 254
+ LN L ++ K + + L+DL L L+ N P +LTSL Y
Sbjct: 154 XTGLNYLTVTE---SKVKDVTPIANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYV 208
Query: 255 NQF------------------NSTISDC--FSNFDDLEYLSLGYNRLQ------------ 282
NQ N+ I+D +N L +L +G N++
Sbjct: 209 NQITDITPVANXTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDINAVKDLTKLK 268
Query: 283 ------GTISSIG-LENLTFIKTLDLSFNELGQDISEIL 314
IS I L NL+ + +L L+ N+LG + E++
Sbjct: 269 XLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDXEVI 307
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 70/261 (26%), Positives = 115/261 (44%), Gaps = 49/261 (18%)
Query: 240 GFKNLTSLRYLDLSYNQFNSTISDC--FSNFDDLEYLSLGYNRLQGTISSIGLENLTFIK 297
G + LT+L YL+L+ NQ I+D SN L L +G N++ IS L+NLT ++
Sbjct: 61 GIEYLTNLEYLNLNGNQ----ITDISPLSNLVKLTNLYIGTNKITD-IS--ALQNLTNLR 113
Query: 298 TLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSDN 357
+L NE +IS+I + + + L L+N G L+ L ++++
Sbjct: 114 --ELYLNE--DNISDISPLANLTKXYSLNLGANHNLSDLSPLSNXTG----LNYLTVTES 165
Query: 358 SVSGPLPPASGELSSLTYLDLSNNNLNGMISEIH-FGNLTELAFFYANGNSVNFKINSKW 416
V P A+ L+ L L L+ N I +I +LT L +F A N + +
Sbjct: 166 KVKDVTPIAN--LTDLYSLSLNYN----QIEDISPLASLTSLHYFTAYVNQI-----TDI 214
Query: 417 VPPFQLLALRLRSCHLGPHFPSWLHSQKHLSK---LDISNTRISDIIPRWFWNSIYQDTI 473
P RL S +G + + L +LS+ L+I +ISDI
Sbjct: 215 TPVAN--XTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDI-------------- 258
Query: 474 PDCWMNWPDLRVLNLGNNKFT 494
+ + L+ LN+G+N+ +
Sbjct: 259 -NAVKDLTKLKXLNVGSNQIS 278
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 32.7 bits (73), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Query: 231 NIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGL 290
N G +P F + L L+L+YNQ ++ + +E LS +N+L+ +
Sbjct: 340 NQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDA 398
Query: 291 ENLTFIKTLDLSFNELG 307
++++ +D S+NE+G
Sbjct: 399 KSVSVXSAIDFSYNEIG 415
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 53/117 (45%), Gaps = 13/117 (11%)
Query: 602 TAMATIGSHHQVKAIYHASFENDYIVEEIS-LVMKGFMVEYNSILNLV--------RSID 652
T++ + H V ++ F YI E S + +K F V +++++ +D
Sbjct: 273 TSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLD 330
Query: 653 ISMNNFSGEIPMEVTNLKGLQSLNLSHNSF--IGKIPETIGNMRSIESLDLSGNQIS 707
S N + + +L L++L L N + KI E M+S++ LD+S N +S
Sbjct: 331 FSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVS 387
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 40/100 (40%), Gaps = 12/100 (12%)
Query: 224 VFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQG 283
L++S N +L+ LR L +S+N+ F +LEYL L +N+L
Sbjct: 24 TILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKL-- 81
Query: 284 TISSIGLENLTFIKTLDLSFNELGQDISEILDIISACAAF 323
I +K LDLSFN D + C F
Sbjct: 82 --VKISCHPTVNLKHLDLSFNA--------FDALPICKEF 111
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 5/91 (5%)
Query: 195 FSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSY 254
S L L +S N I + F +L +LDLS N + +L++LDLS+
Sbjct: 44 LSKLRILIISHNRIQYLDISVFKFN-QELEYLDLSHNKL---VKISCHPTVNLKHLDLSF 99
Query: 255 NQFNS-TISDCFSNFDDLEYLSLGYNRLQGT 284
N F++ I F N L++L L L+ +
Sbjct: 100 NAFDALPICKEFGNMSQLKFLGLSTTHLEKS 130
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 58/202 (28%), Positives = 85/202 (42%), Gaps = 35/202 (17%)
Query: 173 SLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNI 232
SL+ L+L S +L H + + SL ++S NL +IP + +L S N+
Sbjct: 172 SLQNLQLSSNRLTH---VDLSLIPSLFHANVSYNLLSTLAIP---IAVEELDASHNSINV 225
Query: 233 FRGPI-------PDGFKNLTSLRYL---------DLSYNQFNSTISDCFSNFDDLEYLSL 276
RGP+ NLT +L DLSYN+ + F LE L +
Sbjct: 226 VRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYI 285
Query: 277 GYNRLQGTISSIGLENLTFIKTLDLSFNELGQDISEILDIISACAAFE-LESLFLRGCKI 335
NRL ++ G + + +K LDLS N L L + F+ LE+L+L I
Sbjct: 286 SNNRLVA-LNLYG-QPIPTLKVLDLSHNHL-------LHVERNQPQFDRLENLYLDHNSI 336
Query: 336 SGQLTNQLGLFKNLHTLALSDN 357
+T +L L L LS N
Sbjct: 337 ---VTLKLSTHHTLKNLTLSHN 355
Score = 30.0 bits (66), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 77/193 (39%), Gaps = 20/193 (10%)
Query: 212 SIPSWVFGLSDLV-FLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDD 270
I ++ F + + L + N R P F+N+ L L L N +S F N
Sbjct: 89 EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPK 148
Query: 271 LEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQ-DISEILDIISACAAFELESLF 329
L LS+ N L+ I + T ++ L LS N L D+S I + A ++ L S
Sbjct: 149 LTTLSMSNNNLER-IEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLST- 206
Query: 330 LRGCKISGQLTNQLGLFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMISE 389
L + + L S NS++ P + E LT L L +NNL
Sbjct: 207 -------------LAIPIAVEELDASHNSINVVRGPVNVE---LTILKLQHNNLTDTAWL 250
Query: 390 IHFGNLTELAFFY 402
+++ L E+ Y
Sbjct: 251 LNYPGLVEVDLSY 263
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 58/202 (28%), Positives = 85/202 (42%), Gaps = 35/202 (17%)
Query: 173 SLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNI 232
SL+ L+L S +L H + + SL ++S NL +IP + +L S N+
Sbjct: 166 SLQNLQLSSNRLTH---VDLSLIPSLFHANVSYNLLSTLAIP---IAVEELDASHNSINV 219
Query: 233 FRGPI-------PDGFKNLTSLRYL---------DLSYNQFNSTISDCFSNFDDLEYLSL 276
RGP+ NLT +L DLSYN+ + F LE L +
Sbjct: 220 VRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYI 279
Query: 277 GYNRLQGTISSIGLENLTFIKTLDLSFNELGQDISEILDIISACAAFE-LESLFLRGCKI 335
NRL ++ G + + +K LDLS N L L + F+ LE+L+L I
Sbjct: 280 SNNRLVA-LNLYG-QPIPTLKVLDLSHNHL-------LHVERNQPQFDRLENLYLDHNSI 330
Query: 336 SGQLTNQLGLFKNLHTLALSDN 357
+T +L L L LS N
Sbjct: 331 ---VTLKLSTHHTLKNLTLSHN 349
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 78/193 (40%), Gaps = 20/193 (10%)
Query: 212 SIPSWVFGLSDLV-FLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDD 270
I ++ F + + L + N R P F+N+ L L L N +S F N
Sbjct: 83 EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPK 142
Query: 271 LEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQ-DISEILDIISACAAFELESLF 329
L LS+ N L+ I + T ++ L LS N L D+S I SLF
Sbjct: 143 LTTLSMSNNNLER-IEDDTFQATTSLQNLQLSSNRLTHVDLSLI------------PSLF 189
Query: 330 LRGCKISGQLTNQLGLFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMISE 389
+S L + L + + L S NS++ P + E LT L L +NNL
Sbjct: 190 --HANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVE---LTILKLQHNNLTDTAWL 244
Query: 390 IHFGNLTELAFFY 402
+++ L E+ Y
Sbjct: 245 LNYPGLVEVDLSY 257
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 60/242 (24%), Positives = 95/242 (39%), Gaps = 20/242 (8%)
Query: 222 DLVFLDLSSNIFRGPIPDG-FKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNR 280
D LDL +N I DG FKNL +L L L N+ + F+ LE L L N+
Sbjct: 53 DTALLDLQNNKITE-IKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111
Query: 281 LQGTISSIGLENLTFIKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLT 340
L+ + ++ L + NE+ + + + ++ EL + L+ SG
Sbjct: 112 LKELPEKMP----KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS---SGIEN 164
Query: 341 NQLGLFKNLHTLALSDNSVSG---PLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTE 397
K L + ++D +++ LPP SLT L L N + + L
Sbjct: 165 GAFQGMKKLSYIRIADTNITTIPQGLPP------SLTELHLDGNKIT-KVDAASLKGLNN 217
Query: 398 LAFFYANGNSVNFKINSKWVPPFQLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRIS 457
LA + NS++ N L L L + L P L K++ + + N IS
Sbjct: 218 LAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS 276
Query: 458 DI 459
I
Sbjct: 277 AI 278
>pdb|3O53|A Chain A, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
pdb|3O53|B Chain B, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
Length = 317
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 88/201 (43%), Gaps = 31/201 (15%)
Query: 246 SLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNE 305
+++ LDLS N + + + F LE L+L N L T+ LE+L+ ++TLDL+ N
Sbjct: 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNY 91
Query: 306 LGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVSGPLPP 365
+ E+L +E+L IS ++ KN++ L++N ++
Sbjct: 92 ----VQELL------VGPSIETLHAANNNISRVSCSRGQGKKNIY---LANNKITMLRDL 138
Query: 366 ASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNFKINSKWVPPFQLLAL 425
G S + YLDL ++EI N ELA +N + N + Q++
Sbjct: 139 DEGCRSRVQYLDLK-------LNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFA 191
Query: 426 RLRSCHL--------GPHFPS 438
+L++ L GP F S
Sbjct: 192 KLKTLDLSSNKLAFMGPEFQS 212
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Query: 344 GLFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYA 403
G+ L L DN ++ P L+ LT LDL NN L + + + F LT+L
Sbjct: 27 GIPTTTQVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGV-FDKLTQLTQLSL 85
Query: 404 NGNSVN 409
N N +
Sbjct: 86 NDNQLK 91
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 60/242 (24%), Positives = 95/242 (39%), Gaps = 20/242 (8%)
Query: 222 DLVFLDLSSNIFRGPIPDG-FKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNR 280
D LDL +N I DG FKNL +L L L N+ + F+ LE L L N+
Sbjct: 53 DTALLDLQNNKITE-IKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111
Query: 281 LQGTISSIGLENLTFIKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLT 340
L+ + ++ L + NE+ + + + ++ EL + L+ SG
Sbjct: 112 LKELPEKMP----KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS---SGIEN 164
Query: 341 NQLGLFKNLHTLALSDNSVSG---PLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTE 397
K L + ++D +++ LPP SLT L L N + + L
Sbjct: 165 GAFQGMKKLSYIRIADTNITTIPQGLPP------SLTELHLDGNKIT-KVDAASLKGLNN 217
Query: 398 LAFFYANGNSVNFKINSKWVPPFQLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRIS 457
LA + NS++ N L L L + L P L K++ + + N IS
Sbjct: 218 LAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS 276
Query: 458 DI 459
I
Sbjct: 277 AI 278
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Query: 344 GLFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYA 403
G+ L L DN ++ P L+ LT LDL NN L + + + F LT+L
Sbjct: 35 GIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGV-FDKLTQLTQLSL 93
Query: 404 NGNSVN 409
N N +
Sbjct: 94 NDNQLK 99
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 17/64 (26%)
Query: 220 LSDLVFLDLSSNIFR--------------GPIPDGFKNLTSLRYLDLSYNQFNS---TIS 262
LS+L ++S+NIF+ +P KNL++LR LDLS+N+ S +
Sbjct: 231 LSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELG 290
Query: 263 DCFS 266
CF
Sbjct: 291 SCFQ 294
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 24/84 (28%)
Query: 548 WMGERFSRLRILNLRSNKLHGIF--------------PIQICHLSSLQILDVAYNRLSGS 593
W S L+I N+ +N F P +I +LS+L++LD+++NRL+ S
Sbjct: 226 WHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLT-S 284
Query: 594 VPKCINNFTAMATIGSHHQVKAIY 617
+P A +GS Q+K Y
Sbjct: 285 LP---------AELGSCFQLKYFY 299
Score = 30.0 bits (66), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 349 LHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSV 408
L L L+ NS++ LP LS+L LDLS+N L + +E+ G+ +L +FY N V
Sbjct: 249 LTRLYLNGNSLTE-LPAEIKNLSNLRVLDLSHNRLTSLPAEL--GSCFQLKYFYFFDNMV 305
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Query: 344 GLFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYA 403
G+ L L DN ++ P L+ LT LDL NN L + + + F LT+L
Sbjct: 27 GIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGV-FDKLTQLTQLSL 85
Query: 404 NGNSV 408
N N +
Sbjct: 86 NDNQL 90
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 46/117 (39%), Gaps = 26/117 (22%)
Query: 213 IPSWVFG-LSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDL------------------- 252
IP F L +DLS+N PD F+ L SL L L
Sbjct: 47 IPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSL 106
Query: 253 -----SYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFN 304
+ N+ N D F + +L LSL N+LQ TI+ L I+T+ L+ N
Sbjct: 107 QLLLLNANKINXLRVDAFQDLHNLNLLSLYDNKLQ-TIAKGTFSPLRAIQTMHLAQN 162
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 50/108 (46%), Gaps = 3/108 (2%)
Query: 173 SLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVF-GLSDLVFLDLSSN 231
L+ + L + ++ AP A SLN+L L GN T +P +F GL L L L++N
Sbjct: 57 KLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI--TELPKSLFEGLFSLQLLLLNAN 114
Query: 232 IFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYN 279
D F++L +L L L N+ + FS ++ + L N
Sbjct: 115 KINXLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 37/90 (41%), Gaps = 4/90 (4%)
Query: 192 SANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLD 251
+A S N +D G G T IP+ + + + L N + P F LR +D
Sbjct: 7 AACTCSNNIVDCRGK--GLTEIPTNL--PETITEIRLEQNTIKVIPPGAFSPYKKLRRID 62
Query: 252 LSYNQFNSTISDCFSNFDDLEYLSLGYNRL 281
LS NQ + D F L L L N++
Sbjct: 63 LSNNQISELAPDAFQGLRSLNSLVLYGNKI 92
Score = 29.6 bits (65), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 33/73 (45%)
Query: 635 KGFMVEYNSILNLVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMR 694
KG ++ + I + N P + K L+ ++LS+N P+ +R
Sbjct: 21 KGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLR 80
Query: 695 SIESLDLSGNQIS 707
S+ SL L GN+I+
Sbjct: 81 SLNSLVLYGNKIT 93
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 37/90 (41%), Gaps = 4/90 (4%)
Query: 192 SANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLD 251
+A S N +D G G T IP+ + + + L N + P F LR +D
Sbjct: 7 AACTCSNNIVDCRGK--GLTEIPTNL--PETITEIRLEQNTIKVIPPGAFSPYKKLRRID 62
Query: 252 LSYNQFNSTISDCFSNFDDLEYLSLGYNRL 281
LS NQ + D F L L L N++
Sbjct: 63 LSNNQISELAPDAFQGLRSLNSLVLYGNKI 92
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 46/117 (39%), Gaps = 26/117 (22%)
Query: 213 IPSWVFG-LSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDL------------------- 252
IP F L +DLS+N PD F+ L SL L L
Sbjct: 47 IPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSL 106
Query: 253 -----SYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFN 304
+ N+ N D F + +L LSL N+LQ TI+ L I+T+ L+ N
Sbjct: 107 QLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQ-TIAKGTFSPLRAIQTMHLAQN 162
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 50/108 (46%), Gaps = 3/108 (2%)
Query: 173 SLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVF-GLSDLVFLDLSSN 231
L+ + L + ++ AP A SLN+L L GN T +P +F GL L L L++N
Sbjct: 57 KLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI--TELPKSLFEGLFSLQLLLLNAN 114
Query: 232 IFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYN 279
D F++L +L L L N+ + FS ++ + L N
Sbjct: 115 KINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162
Score = 29.6 bits (65), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 33/73 (45%)
Query: 635 KGFMVEYNSILNLVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMR 694
KG ++ + I + N P + K L+ ++LS+N P+ +R
Sbjct: 21 KGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLR 80
Query: 695 SIESLDLSGNQIS 707
S+ SL L GN+I+
Sbjct: 81 SLNSLVLYGNKIT 93
>pdb|1J2G|A Chain A, Crystal Structure Of Urate Oxidase From Bacillus Sp. Tb-90
Co- Crystallized With 8-Azaxanthine
pdb|1J2G|B Chain B, Crystal Structure Of Urate Oxidase From Bacillus Sp. Tb-90
Co- Crystallized With 8-Azaxanthine
pdb|1J2G|C Chain C, Crystal Structure Of Urate Oxidase From Bacillus Sp. Tb-90
Co- Crystallized With 8-Azaxanthine
pdb|1J2G|D Chain D, Crystal Structure Of Urate Oxidase From Bacillus Sp. Tb-90
Co- Crystallized With 8-Azaxanthine
Length = 319
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 631 SLVMKGFMVEY-NSILNLVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKI 686
LV K EY + LN+VR+ D ++N I + + L GLQ + +S NSF+G I
Sbjct: 137 ELVFKKSRNEYATAYLNMVRNEDNTLN-----ITEQQSGLAGLQLIKVSGNSFVGFI 188
>pdb|3OJA|A Chain A, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 487
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 87/200 (43%), Gaps = 31/200 (15%)
Query: 247 LRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNEL 306
++ LDLS N + + + F LE L+L N L T+ LE+L+ ++TLDL+ N
Sbjct: 36 VKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNY- 91
Query: 307 GQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVSGPLPPA 366
+ E+L +E+L IS ++ KN++ L++N ++
Sbjct: 92 ---VQELL------VGPSIETLHAANNNISRVSCSRGQGKKNIY---LANNKITMLRDLD 139
Query: 367 SGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNFKINSKWVPPFQLLALR 426
G S + YLDL ++EI N ELA +N + N + Q++ +
Sbjct: 140 EGCRSRVQYLDLK-------LNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAK 192
Query: 427 LRSCHL--------GPHFPS 438
L++ L GP F S
Sbjct: 193 LKTLDLSSNKLAFMGPEFQS 212
>pdb|3R38|A Chain A, 2.23 Angstrom Resolution Crystal Structure Of
Udp-N-Acetylglucosamine 1-Carboxyvinyltransferase (Mura)
From Listeria Monocytogenes Egd-E
Length = 454
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 10/34 (29%), Positives = 20/34 (58%)
Query: 239 DGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLE 272
DG+ +T L+YLD YN F+ + ++ + ++
Sbjct: 408 DGYTQVTELKYLDRGYNNFHGKLQALGADVERVD 441
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,703,183
Number of Sequences: 62578
Number of extensions: 906326
Number of successful extensions: 2679
Number of sequences better than 100.0: 91
Number of HSP's better than 100.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 41
Number of HSP's that attempted gapping in prelim test: 1739
Number of HSP's gapped (non-prelim): 496
length of query: 790
length of database: 14,973,337
effective HSP length: 107
effective length of query: 683
effective length of database: 8,277,491
effective search space: 5653526353
effective search space used: 5653526353
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)