Query 047929
Match_columns 790
No_of_seqs 457 out of 4445
Neff 10.5
Searched_HMMs 46136
Date Fri Mar 29 04:41:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047929.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047929hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 7.6E-63 1.6E-67 591.1 45.1 582 5-757 28-611 (968)
2 PLN00113 leucine-rich repeat r 100.0 1.6E-51 3.4E-56 493.4 38.1 516 147-757 70-588 (968)
3 KOG4194 Membrane glycoprotein 100.0 3.3E-35 7.2E-40 295.6 8.6 373 324-756 79-455 (873)
4 KOG4194 Membrane glycoprotein 100.0 4E-35 8.7E-40 295.0 7.9 370 72-514 79-448 (873)
5 KOG0472 Leucine-rich repeat pr 100.0 3.1E-38 6.8E-43 303.7 -20.0 266 48-385 46-311 (565)
6 KOG0472 Leucine-rich repeat pr 100.0 1.1E-36 2.5E-41 292.9 -15.2 478 173-756 46-543 (565)
7 KOG0618 Serine/threonine phosp 100.0 3.1E-33 6.7E-38 296.9 -6.8 274 52-383 3-276 (1081)
8 KOG0618 Serine/threonine phosp 100.0 2.9E-33 6.2E-38 297.1 -7.3 464 174-730 23-488 (1081)
9 KOG0444 Cytoskeletal regulator 100.0 1.1E-31 2.4E-36 272.0 -5.4 254 68-384 4-258 (1255)
10 KOG0444 Cytoskeletal regulator 100.0 8.7E-31 1.9E-35 265.6 -4.5 368 46-494 6-375 (1255)
11 PLN03210 Resistant to P. syrin 99.9 1.1E-20 2.4E-25 226.7 31.2 340 263-706 552-905 (1153)
12 PLN03210 Resistant to P. syrin 99.9 1.6E-20 3.5E-25 225.3 28.7 315 348-735 590-910 (1153)
13 KOG4237 Extracellular matrix p 99.8 2.2E-23 4.7E-28 201.6 -4.2 290 221-542 67-359 (498)
14 KOG4237 Extracellular matrix p 99.8 7.4E-23 1.6E-27 197.9 -3.7 292 46-384 66-359 (498)
15 PRK15387 E3 ubiquitin-protein 99.8 2.3E-18 4.9E-23 191.0 17.9 80 648-736 384-463 (788)
16 PRK15387 E3 ubiquitin-protein 99.7 3E-17 6.4E-22 182.2 17.6 260 48-387 202-461 (788)
17 PRK15370 E3 ubiquitin-protein 99.7 3.7E-16 8.1E-21 174.8 17.6 309 6-384 63-428 (754)
18 PRK15370 E3 ubiquitin-protein 99.7 1.7E-16 3.7E-21 177.6 13.5 77 648-731 348-428 (754)
19 cd00116 LRR_RI Leucine-rich re 99.6 3.1E-17 6.7E-22 171.6 -0.1 284 52-358 3-318 (319)
20 cd00116 LRR_RI Leucine-rich re 99.6 1E-16 2.2E-21 167.7 2.9 264 75-360 2-291 (319)
21 KOG0617 Ras suppressor protein 99.6 9E-18 1.9E-22 143.8 -4.8 184 502-736 30-217 (264)
22 KOG0617 Ras suppressor protein 99.5 3.9E-16 8.5E-21 133.9 -4.6 166 525-740 29-195 (264)
23 PLN03150 hypothetical protein; 99.3 2.2E-11 4.9E-16 136.5 12.4 126 4-133 370-503 (623)
24 KOG0532 Leucine-rich repeat (L 99.2 5.9E-13 1.3E-17 136.0 -5.9 192 504-750 74-269 (722)
25 KOG0532 Leucine-rich repeat (L 99.2 8.2E-13 1.8E-17 134.9 -5.1 196 479-729 73-271 (722)
26 KOG1909 Ran GTPase-activating 99.1 2.8E-12 6.1E-17 123.7 -2.1 240 46-307 29-311 (382)
27 KOG3207 Beta-tubulin folding c 99.1 1.1E-11 2.4E-16 123.0 1.0 164 69-234 119-284 (505)
28 PLN03150 hypothetical protein; 99.1 1.4E-10 3.1E-15 130.0 8.7 116 647-762 419-538 (623)
29 KOG1909 Ran GTPase-activating 99.0 3.6E-11 7.7E-16 116.2 0.3 260 64-359 23-310 (382)
30 KOG4658 Apoptotic ATPase [Sign 99.0 1.1E-10 2.5E-15 133.3 4.3 180 47-234 545-730 (889)
31 KOG3207 Beta-tubulin folding c 99.0 5E-11 1.1E-15 118.4 0.8 221 117-362 118-341 (505)
32 PF14580 LRR_9: Leucine-rich r 99.0 2.9E-10 6.2E-15 103.6 3.6 125 48-179 20-147 (175)
33 KOG1259 Nischarin, modulator o 99.0 1.1E-10 2.4E-15 110.0 0.3 131 554-734 284-415 (490)
34 COG4886 Leucine-rich repeat (L 98.9 1.3E-09 2.8E-14 117.3 6.9 103 481-588 116-219 (394)
35 KOG4658 Apoptotic ATPase [Sign 98.9 8.6E-10 1.9E-14 126.2 5.3 228 46-282 570-807 (889)
36 PF14580 LRR_9: Leucine-rich r 98.9 1.5E-09 3.3E-14 98.8 5.1 106 197-307 20-126 (175)
37 KOG1259 Nischarin, modulator o 98.9 4.1E-10 8.9E-15 106.2 0.8 132 172-310 284-415 (490)
38 COG4886 Leucine-rich repeat (L 98.8 4.5E-09 9.8E-14 113.0 6.8 196 75-310 97-293 (394)
39 PF13855 LRR_8: Leucine rich r 98.8 5.2E-09 1.1E-13 78.1 3.1 61 670-730 1-61 (61)
40 PF13855 LRR_8: Leucine rich r 98.6 6.2E-08 1.3E-12 72.2 4.6 60 481-540 1-60 (61)
41 KOG0531 Protein phosphatase 1, 98.5 1E-08 2.3E-13 110.2 -1.7 197 68-282 69-268 (414)
42 KOG2120 SCF ubiquitin ligase, 98.5 2.4E-09 5.1E-14 101.2 -7.1 253 36-298 127-391 (419)
43 KOG2120 SCF ubiquitin ligase, 98.5 2.4E-09 5.3E-14 101.1 -7.3 224 47-272 159-390 (419)
44 PF08263 LRRNT_2: Leucine rich 98.4 3.3E-07 7.2E-12 62.1 4.6 40 4-43 1-43 (43)
45 KOG0531 Protein phosphatase 1, 98.4 3.8E-08 8.2E-13 105.9 -0.1 85 648-735 234-322 (414)
46 KOG2982 Uncharacterized conser 98.4 1.2E-07 2.5E-12 90.0 2.9 90 144-233 69-158 (418)
47 KOG2982 Uncharacterized conser 98.3 5.8E-08 1.3E-12 92.0 -1.8 211 197-409 46-262 (418)
48 KOG1859 Leucine-rich repeat pr 98.3 8.9E-09 1.9E-13 108.8 -8.5 126 555-731 165-292 (1096)
49 KOG1859 Leucine-rich repeat pr 98.2 2.7E-08 5.9E-13 105.3 -6.4 110 644-759 185-297 (1096)
50 COG5238 RNA1 Ran GTPase-activa 98.2 5.2E-07 1.1E-11 84.5 2.6 252 145-408 29-315 (388)
51 KOG4341 F-box protein containi 98.2 6.2E-08 1.4E-12 96.3 -5.2 85 47-131 138-227 (483)
52 PRK15386 type III secretion pr 98.1 1.1E-05 2.4E-10 83.0 9.6 74 502-589 49-123 (426)
53 COG5238 RNA1 Ran GTPase-activa 98.1 4.5E-07 9.8E-12 84.9 -0.8 236 47-308 30-317 (388)
54 KOG4341 F-box protein containi 97.9 4.4E-07 9.4E-12 90.5 -4.7 66 117-182 161-226 (483)
55 PRK15386 type III secretion pr 97.8 8.5E-05 1.8E-09 76.6 9.6 91 479-587 50-141 (426)
56 KOG3665 ZYG-1-like serine/thre 97.8 1E-05 2.2E-10 90.8 2.8 112 145-259 147-264 (699)
57 KOG4579 Leucine-rich repeat (L 97.8 8.9E-07 1.9E-11 74.2 -4.4 103 650-755 31-137 (177)
58 KOG3665 ZYG-1-like serine/thre 97.8 9.4E-06 2E-10 91.1 1.9 112 47-161 122-235 (699)
59 KOG1644 U2-associated snRNP A' 97.6 8.2E-05 1.8E-09 67.2 5.0 125 49-208 21-152 (233)
60 PF12799 LRR_4: Leucine Rich r 97.6 4E-05 8.7E-10 52.0 2.4 36 671-707 2-37 (44)
61 PF12799 LRR_4: Leucine Rich r 97.6 4.2E-05 9.2E-10 51.8 2.5 37 694-731 1-37 (44)
62 KOG2739 Leucine-rich acidic nu 97.6 3.9E-05 8.4E-10 72.6 2.9 127 48-178 19-149 (260)
63 KOG1644 U2-associated snRNP A' 97.6 0.00012 2.6E-09 66.2 5.8 85 221-307 42-126 (233)
64 KOG4579 Leucine-rich repeat (L 97.5 1E-05 2.2E-10 68.0 -1.7 116 647-770 54-170 (177)
65 PF13306 LRR_5: Leucine rich r 97.1 0.0027 5.8E-08 55.9 8.3 120 477-603 8-127 (129)
66 KOG2123 Uncharacterized conser 96.9 2.9E-05 6.3E-10 73.4 -5.7 103 70-178 18-123 (388)
67 PF13306 LRR_5: Leucine rich r 96.9 0.0032 6.9E-08 55.4 7.0 99 477-581 31-129 (129)
68 KOG2739 Leucine-rich acidic nu 96.8 0.00062 1.4E-08 64.6 2.4 86 480-567 42-129 (260)
69 KOG2123 Uncharacterized conser 96.5 8.3E-05 1.8E-09 70.4 -5.6 101 443-560 18-123 (388)
70 KOG1947 Leucine rich repeat pr 96.5 0.00017 3.6E-09 80.3 -4.4 192 68-271 185-389 (482)
71 KOG1947 Leucine rich repeat pr 96.5 0.00028 6.2E-09 78.5 -2.8 177 119-305 187-373 (482)
72 PF00560 LRR_1: Leucine Rich R 94.7 0.012 2.7E-07 32.9 0.7 12 696-707 2-13 (22)
73 PF00560 LRR_1: Leucine Rich R 94.5 0.016 3.4E-07 32.5 0.8 21 97-118 1-21 (22)
74 KOG0473 Leucine-rich repeat pr 91.4 0.0053 1.1E-07 57.0 -6.6 83 46-132 41-123 (326)
75 PF13504 LRR_7: Leucine rich r 90.9 0.13 2.8E-06 26.6 1.1 10 696-705 3-12 (17)
76 KOG4308 LRR-containing protein 89.8 0.0019 4.2E-08 69.6 -12.9 39 505-543 262-304 (478)
77 KOG3864 Uncharacterized conser 88.9 0.061 1.3E-06 49.3 -1.9 82 506-587 102-185 (221)
78 smart00370 LRR Leucine-rich re 87.9 0.4 8.6E-06 28.0 1.8 15 694-708 2-16 (26)
79 smart00369 LRR_TYP Leucine-ric 87.9 0.4 8.6E-06 28.0 1.8 15 694-708 2-16 (26)
80 KOG0473 Leucine-rich repeat pr 86.8 0.024 5.1E-07 52.9 -5.9 85 645-732 41-125 (326)
81 KOG3864 Uncharacterized conser 86.7 0.068 1.5E-06 49.0 -3.0 81 48-128 102-184 (221)
82 KOG4308 LRR-containing protein 86.2 0.012 2.5E-07 63.7 -9.7 38 323-360 262-303 (478)
83 smart00369 LRR_TYP Leucine-ric 82.1 1.2 2.6E-05 25.9 2.0 20 669-688 1-20 (26)
84 smart00370 LRR Leucine-rich re 82.1 1.2 2.6E-05 25.9 2.0 20 669-688 1-20 (26)
85 PF13516 LRR_6: Leucine Rich r 76.3 1.2 2.7E-05 25.3 0.7 12 530-541 3-14 (24)
86 KOG4242 Predicted myosin-I-bin 69.4 22 0.00047 37.7 8.1 21 47-67 165-185 (553)
87 smart00365 LRR_SD22 Leucine-ri 64.5 5.8 0.00013 23.2 1.7 14 694-707 2-15 (26)
88 smart00364 LRR_BAC Leucine-ric 62.1 5.5 0.00012 23.2 1.3 13 695-707 3-15 (26)
89 smart00368 LRR_RI Leucine rich 52.3 12 0.00025 22.3 1.7 14 694-707 2-15 (28)
90 KOG3763 mRNA export factor TAP 44.9 11 0.00025 40.6 1.5 31 530-560 271-307 (585)
91 smart00367 LRR_CC Leucine-rich 31.6 32 0.0007 19.9 1.3 12 718-729 2-13 (26)
92 KOG4242 Predicted myosin-I-bin 25.3 3.5E+02 0.0076 29.2 8.2 129 172-306 135-280 (553)
93 TIGR00864 PCC polycystin catio 23.8 44 0.00094 44.0 1.8 32 676-707 1-32 (2740)
94 KOG3763 mRNA export factor TAP 23.6 50 0.0011 36.0 1.9 68 167-235 213-284 (585)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=7.6e-63 Score=591.07 Aligned_cols=582 Identities=35% Similarity=0.546 Sum_probs=417.0
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCCCCCCCCCcccCceeecCCCCcEEEEEcCCCCCCccccccCcCCCCCCEEeCCCCCCC
Q 047929 5 ESERVALIKLKQDFKDPSNHLASWIGDVDCCEWGGVVCNNITGHVLELNLERSELGGKINPALVDLKHLNLLDLSGNDFQ 84 (790)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~c~~~~~~v~~L~L~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~ 84 (790)
.+|..||++||+++.||.+..++|...++||.|.|+.|.+ .++|+.|+|+++.+.+.++.++..+++|++|+|++|.+.
T Consensus 28 ~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~c~w~gv~c~~-~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~ 106 (968)
T PLN00113 28 AEELELLLSFKSSINDPLKYLSNWNSSADVCLWQGITCNN-SSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLS 106 (968)
T ss_pred HHHHHHHHHHHHhCCCCcccCCCCCCCCCCCcCcceecCC-CCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccC
Confidence 4788999999999988999999997768999999999984 579999999999999999999999999999999999998
Q ss_pred CCCcCcccc-CCCCCCEEeCCCCcccccCCCCCCCCCCCcEEECcCCcccccccCccccCCCCCCcEEECCCCCCCCCch
Q 047929 85 GIQIPEYIG-SMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHLDLSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASD 163 (790)
Q Consensus 85 ~~~l~~~~~-~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~ls~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 163 (790)
+. +|..+. .+++|++|++++|++++.+|. +.+++|++|++++|.+....
T Consensus 107 ~~-ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~--------------------------- 156 (968)
T PLN00113 107 GP-IPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEI--------------------------- 156 (968)
T ss_pred Cc-CChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccC---------------------------
Confidence 65 776654 899999999999999886774 45778888888877532110
Q ss_pred hHHhhCCCCCCCEEEccCccccccCcccCcCCCCCCEEECCCCCCCCCCcchhccCCCCCcEEEccCCcCCCCCCccCCC
Q 047929 164 WLLVINSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKN 243 (790)
Q Consensus 164 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~ 243 (790)
+..++++++|++|++++|.+....+..+.++++|++|++++|.+.+ .+|..+..+++|++|++++|.+.+.+|..+++
T Consensus 157 -p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~ 234 (968)
T PLN00113 157 -PNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVG-QIPRELGQMKSLKWIYLGYNNLSGEIPYEIGG 234 (968)
T ss_pred -ChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcC-cCChHHcCcCCccEEECcCCccCCcCChhHhc
Confidence 1134455555555555555544444455555555555555555443 34555555555555555555555445555555
Q ss_pred CCCCcEEeCCCCcCCccccccccCCCCCCEEEccCcccccccCcccccCCCCCCEEEccCCCCCCCcchhhhhhhccccC
Q 047929 244 LTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQDISEILDIISACAAF 323 (790)
Q Consensus 244 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 323 (790)
+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+.+|.. +.+ ++
T Consensus 235 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~-----------------------------l~ 284 (968)
T PLN00113 235 LTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPS-IFS-----------------------------LQ 284 (968)
T ss_pred CCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchh-Hhh-----------------------------cc
Confidence 555555555555544444444444444444444444444333322 223 33
Q ss_pred CCCEEEccCCccccccchhhccCCCCcEEEccCcccCCCCCcCcCCCCCCCEEECcCCcCCCcCChhhhccccccceeec
Q 047929 324 ELESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYA 403 (790)
Q Consensus 324 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l 403 (790)
+|++|++++|.+.+..|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+
T Consensus 285 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~------------------ 346 (968)
T PLN00113 285 KLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSG------------------ 346 (968)
T ss_pred CcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcC------------------
Confidence 44444444444444445555555555556665555555555555555555555555554433
Q ss_pred CCCcceeecCCCCCCcccceEEEcCCCCCCCCCCcccccCCCCCEEEccCCccCCCcccccccccccccCCCccCCCCCC
Q 047929 404 NGNSVNFKINSKWVPPFQLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDL 483 (790)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~L 483 (790)
..|..+..+++|+.|++++|.+.. .+|..+..+++|
T Consensus 347 -------------------------------~~p~~l~~~~~L~~L~Ls~n~l~~-------------~~p~~~~~~~~L 382 (968)
T PLN00113 347 -------------------------------EIPKNLGKHNNLTVLDLSTNNLTG-------------EIPEGLCSSGNL 382 (968)
T ss_pred -------------------------------cCChHHhCCCCCcEEECCCCeeEe-------------eCChhHhCcCCC
Confidence 233334445566666666666443 233344556677
Q ss_pred cEEEccCCcccccCCcCCCCCCCCCEEEccCCcccccCCccccCCCCCcEEECcCCcccccCchhhhhcCCCCcEEEcCC
Q 047929 484 RVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRS 563 (790)
Q Consensus 484 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~ 563 (790)
+.|++++|.+.+..|..+..+++|+.|++++|++++..|..+..+++|+.|++++|.+.+.+|..+. .+++|+.|++++
T Consensus 383 ~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~~ 461 (968)
T PLN00113 383 FKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKW-DMPSLQMLSLAR 461 (968)
T ss_pred CEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhc-cCCCCcEEECcC
Confidence 7777777777777777777778888888888887777777777788888888888888777776554 578888888888
Q ss_pred CcccccCCccccCCCCCcEEEccCCcccccCCcchhccccccccCCccccceeecccccccceeeeeeeeeccchhhhhh
Q 047929 564 NKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNS 643 (790)
Q Consensus 564 n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 643 (790)
|++.+..|..+ ..++|+.|++++|++.+..|..+.++++
T Consensus 462 n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~---------------------------------------- 500 (968)
T PLN00113 462 NKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSE---------------------------------------- 500 (968)
T ss_pred ceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhc----------------------------------------
Confidence 88877766654 4578899999999988888876665554
Q ss_pred cccceeEEEccCccCCCCCCcccccCCCCCEEeCCCCcCCcCCCccccCCCCCCEEeCcCccCccccCccccCCCCCCEE
Q 047929 644 ILNLVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLSFLNHL 723 (790)
Q Consensus 644 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L 723 (790)
|+.|+|++|.+.+.+|..+..+++|++|+|++|.+++.+|..|..+++|+.|++++|++.+.+|..+..+++|+.|
T Consensus 501 ----L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l 576 (968)
T PLN00113 501 ----LMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQV 576 (968)
T ss_pred ----cCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEE
Confidence 4579999999998999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECcCCcccccCCCCCcCCccCCccccCC-cccCCC
Q 047929 724 NLSDNKLVGKIPSSTQLQSFGASSITGN-DLCGAP 757 (790)
Q Consensus 724 ~l~~n~l~~~~p~~~~~~sl~~l~~~~n-~l~~~~ 757 (790)
++++|++.+.+|..+++.++....+.|| .+|+.+
T Consensus 577 ~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~ 611 (968)
T PLN00113 577 NISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGD 611 (968)
T ss_pred eccCCcceeeCCCcchhcccChhhhcCCccccCCc
Confidence 9999999999999999999999999999 799864
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.6e-51 Score=493.44 Aligned_cols=516 Identities=32% Similarity=0.487 Sum_probs=365.7
Q ss_pred CCcEEECCCCCCCCCchhHHhhCCCCCCCEEEccCccccc-cCcccCcCCCCCCEEECCCCCCCCCCcchhccCCCCCcE
Q 047929 147 LLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHH-FAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVF 225 (790)
Q Consensus 147 ~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~L~~ 225 (790)
+++.|+++++.+.+.. ...+..+++|++|++++|.+.. ++...+..+++|++|++++|.+.+ .+|. ..+++|++
T Consensus 70 ~v~~L~L~~~~i~~~~--~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~-~~p~--~~l~~L~~ 144 (968)
T PLN00113 70 RVVSIDLSGKNISGKI--SSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTG-SIPR--GSIPNLET 144 (968)
T ss_pred cEEEEEecCCCccccC--ChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCcccc-ccCc--cccCCCCE
Confidence 4555555555444331 1244455555555555555442 222333355555555555555433 2332 23445555
Q ss_pred EEccCCcCCCCCCccCCCCCCCcEEeCCCCcCCccccccccCCCCCCEEEccCcccccccCcccccCCCCCCEEEccCCC
Q 047929 226 LDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNE 305 (790)
Q Consensus 226 L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~l~~L~~L~l~~~~ 305 (790)
|++++|.+.+.+|..++.+++|++|++++|.+.+..|..+..+++|++|++++|.+.+.+|.. +..+++|+.|++++|
T Consensus 145 L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n- 222 (968)
T PLN00113 145 LDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRE-LGQMKSLKWIYLGYN- 222 (968)
T ss_pred EECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChH-HcCcCCccEEECcCC-
Confidence 555555555445555555555555555555554444555555555555555555544444433 444455555555544
Q ss_pred CCCCcchhhhhhhccccCCCCEEEccCCccccccchhhccCCCCcEEEccCcccCCCCCcCcCCCCCCCEEECcCCcCCC
Q 047929 306 LGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNG 385 (790)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~ 385 (790)
.+.+..|..+..+++|++|++++|.+.+.+|..++.+++|+.|++++|.+.+
T Consensus 223 ----------------------------~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 274 (968)
T PLN00113 223 ----------------------------NLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSG 274 (968)
T ss_pred ----------------------------ccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeec
Confidence 4444444444555555555555555544455555555555555555555443
Q ss_pred cCChhhhccccccceeecCCCcceeecCCCCCCcccceEEEcCCCCCCCCCCcccccCCCCCEEEccCCccCCCcccccc
Q 047929 386 MISEIHFGNLTELAFFYANGNSVNFKINSKWVPPFQLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFW 465 (790)
Q Consensus 386 ~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~ 465 (790)
..+. .+..+++|+.++++.|.+....+..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+.
T Consensus 275 ~~p~-~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~------ 347 (968)
T PLN00113 275 PIPP-SIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGE------ 347 (968)
T ss_pred cCch-hHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCc------
Confidence 3332 344455555555555555444455555667777888888888888888889999999999999997643
Q ss_pred cccccccCCCccCCCCCCcEEEccCCcccccCCcCCCCCCCCCEEEccCCcccccCCccccCCCCCcEEECcCCcccccC
Q 047929 466 NSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNI 545 (790)
Q Consensus 466 ~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~ 545 (790)
+|..+..+++|+.|++++|++.+..|..+..+++|+.|++++|++.+..|..+..+++|+.|++++|.+.+.+
T Consensus 348 -------~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~ 420 (968)
T PLN00113 348 -------IPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGEL 420 (968)
T ss_pred -------CChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeEC
Confidence 4455677899999999999999888988888999999999999999999999999999999999999999888
Q ss_pred chhhhhcCCCCcEEEcCCCcccccCCccccCCCCCcEEEccCCcccccCCcchhccccccccCCccccceeecccccccc
Q 047929 546 PTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCINNFTAMATIGSHHQVKAIYHASFENDY 625 (790)
Q Consensus 546 ~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~ 625 (790)
|..+. .+++|+.|++++|++++..+..+..+++|+.|++++|.+.+.+|..+.
T Consensus 421 p~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~-------------------------- 473 (968)
T PLN00113 421 PSEFT-KLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFG-------------------------- 473 (968)
T ss_pred ChhHh-cCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccc--------------------------
Confidence 88764 799999999999999988888888999999999999999877775432
Q ss_pred eeeeeeeeeccchhhhhhcccceeEEEccCccCCCCCCcccccCCCCCEEeCCCCcCCcCCCccccCCCCCCEEeCcCcc
Q 047929 626 IVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQ 705 (790)
Q Consensus 626 ~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~ 705 (790)
...|+.|++++|++.+.+|..+..+++|++|++++|.+.+.+|+.+..+++|++|++++|.
T Consensus 474 -------------------~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 534 (968)
T PLN00113 474 -------------------SKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQ 534 (968)
T ss_pred -------------------cccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCc
Confidence 1346799999999999999999999999999999999999999999999999999999999
Q ss_pred CccccCccccCCCCCCEEECcCCcccccCCCC-CcCCccCCccccCCcccC-CC
Q 047929 706 ISGKIPQSMSSLSFLNHLNLSDNKLVGKIPSS-TQLQSFGASSITGNDLCG-AP 757 (790)
Q Consensus 706 l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~-~~~~sl~~l~~~~n~l~~-~~ 757 (790)
+++.+|..+..+++|+.|++++|++.+.+|.. ..+.+|+.+++++|.+.+ .|
T Consensus 535 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p 588 (968)
T PLN00113 535 LSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLP 588 (968)
T ss_pred ccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCC
Confidence 99999999999999999999999999999976 457889999999997765 44
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=3.3e-35 Score=295.61 Aligned_cols=373 Identities=22% Similarity=0.287 Sum_probs=302.8
Q ss_pred CCCEEEccCCccccccchhhccCCCCcEEEccCcccCCCCCcCcCCCCCCCEEECcCCcCCCcCChhhhccccccceeec
Q 047929 324 ELESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYA 403 (790)
Q Consensus 324 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l 403 (790)
.-+.|++++|.+....+..|.++++|+++++..|.++ .+|...+....|+.|++.+|.++....+ .+..++.|+.+++
T Consensus 79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se-~L~~l~alrslDL 156 (873)
T KOG4194|consen 79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSE-ELSALPALRSLDL 156 (873)
T ss_pred ceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHH-HHHhHhhhhhhhh
Confidence 3466888888888777888888999999999998887 6776555666699999999988765544 6888899999999
Q ss_pred CCCcceeecCCCCCCcccceEEEcCCCCCCCCCCcccccCCCCCEEEccCCccCCCcccccccccccccCCCccCCCCCC
Q 047929 404 NGNSVNFKINSKWVPPFQLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDL 483 (790)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~L 483 (790)
+.|.+.......|..-.++++|++++|.++..-...|..+.+|..|.++.|.++.++++. |.+++.|
T Consensus 157 SrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~-------------Fk~L~~L 223 (873)
T KOG4194|consen 157 SRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRS-------------FKRLPKL 223 (873)
T ss_pred hhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHH-------------hhhcchh
Confidence 999888877788888889999999999999888888999999999999999998876654 4678999
Q ss_pred cEEEccCCcccccCCcCCCCCCCCCEEEccCCcccccCCccccCCCCCcEEECcCCcccccCchhhhhcCCCCcEEEcCC
Q 047929 484 RVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRS 563 (790)
Q Consensus 484 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~ 563 (790)
+.|++..|.|...-...|.++++|+.|.+..|+|.......|-.|.++++|++..|++...-..|++ ++++|+.|++++
T Consensus 224 ~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lf-gLt~L~~L~lS~ 302 (873)
T KOG4194|consen 224 ESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLF-GLTSLEQLDLSY 302 (873)
T ss_pred hhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhccccc-ccchhhhhccch
Confidence 9999999999855466789999999999999999999999999999999999999999877777777 799999999999
Q ss_pred CcccccCCccccCCCCCcEEEccCCcccccCCcchhccccccccCCccccceeecccccccceeeeeeeeeccchhhhhh
Q 047929 564 NKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNS 643 (790)
Q Consensus 564 n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 643 (790)
|.|..+.+.++..+++|++|++++|+++..-+..|..+..|
T Consensus 303 NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~L--------------------------------------- 343 (873)
T KOG4194|consen 303 NAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQL--------------------------------------- 343 (873)
T ss_pred hhhheeecchhhhcccceeEeccccccccCChhHHHHHHHh---------------------------------------
Confidence 99999888999999999999999999996666666655554
Q ss_pred cccceeEEEccCccCCCCCCcccccCCCCCEEeCCCCcCCcCCC---ccccCCCCCCEEeCcCccCccccCccccCCCCC
Q 047929 644 ILNLVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIP---ETIGNMRSIESLDLSGNQISGKIPQSMSSLSFL 720 (790)
Q Consensus 644 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p---~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L 720 (790)
++|.|++|++...-...|..+++|++|+|++|.+...+. ..|.++++|+.|++.+|++......+|..+.+|
T Consensus 344 -----e~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~L 418 (873)
T KOG4194|consen 344 -----EELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEAL 418 (873)
T ss_pred -----hhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCccc
Confidence 467777777765555566777778888888877765544 356777788888888888776666677777788
Q ss_pred CEEECcCCcccccCCCCCcCCccCCccccCC-cccCC
Q 047929 721 NHLNLSDNKLVGKIPSSTQLQSFGASSITGN-DLCGA 756 (790)
Q Consensus 721 ~~L~l~~n~l~~~~p~~~~~~sl~~l~~~~n-~l~~~ 756 (790)
++|++.+|.+...-|..+.+..|++|.+... .+|+.
T Consensus 419 E~LdL~~NaiaSIq~nAFe~m~Lk~Lv~nSssflCDC 455 (873)
T KOG4194|consen 419 EHLDLGDNAIASIQPNAFEPMELKELVMNSSSFLCDC 455 (873)
T ss_pred ceecCCCCcceeecccccccchhhhhhhcccceEEec
Confidence 8888888877766666665556777665553 55643
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=4e-35 Score=295.01 Aligned_cols=370 Identities=23% Similarity=0.264 Sum_probs=267.2
Q ss_pred CCCEEeCCCCCCCCCCcCccccCCCCCCEEeCCCCcccccCCCCCCCCCCCcEEECcCCcccccccCccccCCCCCCcEE
Q 047929 72 HLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHLDLSGSYYELRVEDISWLAGPSLLEHL 151 (790)
Q Consensus 72 ~L~~L~Ls~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~ls~~~~~~~~~~~~~l~~l~~L~~L 151 (790)
.-+.|++++|++..+ -+..|-++++|+.+++.+|.++. +|...+-..+|++|+|.+|.|.....
T Consensus 79 ~t~~LdlsnNkl~~i-d~~~f~nl~nLq~v~l~~N~Lt~-IP~f~~~sghl~~L~L~~N~I~sv~s-------------- 142 (873)
T KOG4194|consen 79 QTQTLDLSNNKLSHI-DFEFFYNLPNLQEVNLNKNELTR-IPRFGHESGHLEKLDLRHNLISSVTS-------------- 142 (873)
T ss_pred ceeeeeccccccccC-cHHHHhcCCcceeeeeccchhhh-cccccccccceeEEeeeccccccccH--------------
Confidence 456699999998877 56778889999999999998886 88877777788999988886543222
Q ss_pred ECCCCCCCCCchhHHhhCCCCCCCEEEccCccccccCcccCcCCCCCCEEECCCCCCCCCCcchhccCCCCCcEEEccCC
Q 047929 152 DTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSN 231 (790)
Q Consensus 152 ~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L~l~~~ 231 (790)
..++.++.|++|+|+.|.++.++...|..-.++++|+|++|.|+... ...+..+.+|.+|.|+.|
T Consensus 143 --------------e~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~-~~~F~~lnsL~tlkLsrN 207 (873)
T KOG4194|consen 143 --------------EELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLE-TGHFDSLNSLLTLKLSRN 207 (873)
T ss_pred --------------HHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccc-cccccccchheeeecccC
Confidence 15666777788888888888887777777778888888888876533 333556777888888888
Q ss_pred cCCCCCCccCCCCCCCcEEeCCCCcCCccccccccCCCCCCEEEccCcccccccCcccccCCCCCCEEEccCCCCCCCcc
Q 047929 232 IFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQDIS 311 (790)
Q Consensus 232 ~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 311 (790)
+++...+..|.++++|+.|++..|.+.......|.++++|+.|.+..|++. .+....|..+.++++|+|..|.+.....
T Consensus 208 rittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~-kL~DG~Fy~l~kme~l~L~~N~l~~vn~ 286 (873)
T KOG4194|consen 208 RITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDIS-KLDDGAFYGLEKMEHLNLETNRLQAVNE 286 (873)
T ss_pred cccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcc-cccCcceeeecccceeecccchhhhhhc
Confidence 888666677777888888888888776555567778888888888888776 4555557777778888887777765544
Q ss_pred hhhhhhhccccCCCCEEEccCCccccccchhhccCCCCcEEEccCcccCCCCCcCcCCCCCCCEEECcCCcCCCcCChhh
Q 047929 312 EILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMISEIH 391 (790)
Q Consensus 312 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~ 391 (790)
. .+.++..|+.|++++|.|....++.+...++|++|+|+.|+++...+..|..+..|++|.++.|.+.... +..
T Consensus 287 g-----~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~-e~a 360 (873)
T KOG4194|consen 287 G-----WLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLA-EGA 360 (873)
T ss_pred c-----cccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHH-hhH
Confidence 4 4456667777777777777777777777777888888888777767777777777777777777766433 335
Q ss_pred hccccccceeecCCCcceeecCCCCCCcccceEEEcCCCCCCCCCCcccccCCCCCEEEccCCccCCCcccccccccccc
Q 047929 392 FGNLTELAFFYANGNSVNFKINSKWVPPFQLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQD 471 (790)
Q Consensus 392 ~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~ 471 (790)
|.++++|+.|+++.|.+.+.+... ...|.++++|+.|++.+|++..+..++
T Consensus 361 f~~lssL~~LdLr~N~ls~~IEDa---------------------a~~f~gl~~LrkL~l~gNqlk~I~krA-------- 411 (873)
T KOG4194|consen 361 FVGLSSLHKLDLRSNELSWCIEDA---------------------AVAFNGLPSLRKLRLTGNQLKSIPKRA-------- 411 (873)
T ss_pred HHHhhhhhhhcCcCCeEEEEEecc---------------------hhhhccchhhhheeecCceeeecchhh--------
Confidence 667777777777777666554432 123556777777777777776654443
Q ss_pred cCCCccCCCCCCcEEEccCCcccccCCcCCCCCCCCCEEEccC
Q 047929 472 TIPDCWMNWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRS 514 (790)
Q Consensus 472 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~ 514 (790)
|.++++|++|++.+|.|..+.+..|..+ .|++|.+..
T Consensus 412 -----fsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 412 -----FSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNS 448 (873)
T ss_pred -----hccCcccceecCCCCcceeecccccccc-hhhhhhhcc
Confidence 3566777777777777776777777766 777776654
No 5
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=3.1e-38 Score=303.69 Aligned_cols=266 Identities=27% Similarity=0.418 Sum_probs=171.8
Q ss_pred cEEEEEcCCCCCCccccccCcCCCCCCEEeCCCCCCCCCCcCccccCCCCCCEEeCCCCcccccCCCCCCCCCCCcEEEC
Q 047929 48 HVLELNLERSELGGKINPALVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHLDL 127 (790)
Q Consensus 48 ~v~~L~L~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~l 127 (790)
.+..+.++.+.++ .+.+.+.++..+.+|++..|+.. .+|.+++.+..++.++.++|++.. +|..+..+..|+++++
T Consensus 46 ~l~~lils~N~l~-~l~~dl~nL~~l~vl~~~~n~l~--~lp~aig~l~~l~~l~vs~n~ls~-lp~~i~s~~~l~~l~~ 121 (565)
T KOG0472|consen 46 DLQKLILSHNDLE-VLREDLKNLACLTVLNVHDNKLS--QLPAAIGELEALKSLNVSHNKLSE-LPEQIGSLISLVKLDC 121 (565)
T ss_pred chhhhhhccCchh-hccHhhhcccceeEEEeccchhh--hCCHHHHHHHHHHHhhcccchHhh-ccHHHhhhhhhhhhhc
Confidence 3556777777765 55567788888888888888877 578888888888888888888876 8888888888888888
Q ss_pred cCCcccccccCccccCCCCCCcEEECCCCCCCCCchhHHhhCCCCCCCEEEccCccccccCcccCcCCCCCCEEECCCCC
Q 047929 128 SGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNL 207 (790)
Q Consensus 128 s~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~ 207 (790)
++|.+...++ .++.+..|+.++..+|.
T Consensus 122 s~n~~~el~~-----------------------------------------------------~i~~~~~l~dl~~~~N~ 148 (565)
T KOG0472|consen 122 SSNELKELPD-----------------------------------------------------SIGRLLDLEDLDATNNQ 148 (565)
T ss_pred cccceeecCc-----------------------------------------------------hHHHHhhhhhhhccccc
Confidence 8775433322 22333444445555555
Q ss_pred CCCCCcchhccCCCCCcEEEccCCcCCCCCCccCCCCCCCcEEeCCCCcCCccccccccCCCCCCEEEccCcccccccCc
Q 047929 208 FGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISS 287 (790)
Q Consensus 208 l~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~ 287 (790)
+ ..+|+.++.+.++..+++.+|++....|. .-+++.|++|+...|-+. .+|..++.+.+|+-|++..|++. .+|+
T Consensus 149 i--~slp~~~~~~~~l~~l~~~~n~l~~l~~~-~i~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lPe 223 (565)
T KOG0472|consen 149 I--SSLPEDMVNLSKLSKLDLEGNKLKALPEN-HIAMKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLPE 223 (565)
T ss_pred c--ccCchHHHHHHHHHHhhccccchhhCCHH-HHHHHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-cCCC
Confidence 5 34555555555666666666655533333 333566666665555443 34455566666666666666655 4443
Q ss_pred ccccCCCCCCEEEccCCCCCCCcchhhhhhhccccCCCCEEEccCCccccccchhhccCCCCcEEEccCcccCCCCCcCc
Q 047929 288 IGLENLTFIKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVSGPLPPAS 367 (790)
Q Consensus 288 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~~~~~~~ 367 (790)
|..+..|++++++.|.+...+.+ ....+.++..|++++|+++ +.|+.+..+.+|+.||+++|.++ .+|..+
T Consensus 224 --f~gcs~L~Elh~g~N~i~~lpae-----~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sL 294 (565)
T KOG0472|consen 224 --FPGCSLLKELHVGENQIEMLPAE-----HLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSL 294 (565)
T ss_pred --CCccHHHHHHHhcccHHHhhHHH-----Hhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCccc
Confidence 55666666666666655443333 3345566666777777666 46666677778888888888887 566777
Q ss_pred CCCCCCCEEECcCCcCCC
Q 047929 368 GELSSLTYLDLSNNNLNG 385 (790)
Q Consensus 368 ~~l~~L~~L~l~~n~~~~ 385 (790)
+++ .|+.|.+.+|++..
T Consensus 295 gnl-hL~~L~leGNPlrT 311 (565)
T KOG0472|consen 295 GNL-HLKFLALEGNPLRT 311 (565)
T ss_pred ccc-eeeehhhcCCchHH
Confidence 877 78888888887654
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.98 E-value=1.1e-36 Score=292.95 Aligned_cols=478 Identities=25% Similarity=0.338 Sum_probs=282.2
Q ss_pred CCCEEEccCccccccCcccCcCCCCCCEEECCCCCCCCCCcchhccCCCCCcEEEccCCcCCCCCCccCCCCCCCcEEeC
Q 047929 173 SLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDL 252 (790)
Q Consensus 173 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l 252 (790)
.++.+.+++|.+....+ .+.++..|.+|++.+|.+ ..+|++++.+..++.++.+.|++. .+|..+..+..++.+++
T Consensus 46 ~l~~lils~N~l~~l~~-dl~nL~~l~vl~~~~n~l--~~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~ 121 (565)
T KOG0472|consen 46 DLQKLILSHNDLEVLRE-DLKNLACLTVLNVHDNKL--SQLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDC 121 (565)
T ss_pred chhhhhhccCchhhccH-hhhcccceeEEEeccchh--hhCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhc
Confidence 45555666665554432 344555666666666655 345666666666666666666655 45555666666666666
Q ss_pred CCCcCCccccccccCCCCCCEEEccCcccccccCcccccCCCCCCEEEccCCCCCCCcchhhhhhhccccCCCCEEEccC
Q 047929 253 SYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQDISEILDIISACAAFELESLFLRG 332 (790)
Q Consensus 253 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 332 (790)
++|.+.. .++.++.+-.|+.++..+|++. ..|.. +..+.++..+++.+|.+...++
T Consensus 122 s~n~~~e-l~~~i~~~~~l~dl~~~~N~i~-slp~~-~~~~~~l~~l~~~~n~l~~l~~--------------------- 177 (565)
T KOG0472|consen 122 SSNELKE-LPDSIGRLLDLEDLDATNNQIS-SLPED-MVNLSKLSKLDLEGNKLKALPE--------------------- 177 (565)
T ss_pred cccceee-cCchHHHHhhhhhhhccccccc-cCchH-HHHHHHHHHhhccccchhhCCH---------------------
Confidence 6665543 3344555555555555555554 33333 3444444444444444433333
Q ss_pred CccccccchhhccCCCCcEEEccCcccCCCCCcCcCCCCCCCEEECcCCcCCCcCChhhhccccccceeecCCCcceeec
Q 047929 333 CKISGQLTNQLGLFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNFKI 412 (790)
Q Consensus 333 ~~~~~~~~~~l~~l~~L~~L~L~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~ 412 (790)
..+. ++.|++++...|-+. .+|+.++.+.+|..|++..|++...+ .|+++..|+.+++..|.+..
T Consensus 178 --------~~i~-m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~~lP---ef~gcs~L~Elh~g~N~i~~-- 242 (565)
T KOG0472|consen 178 --------NHIA-MKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIRFLP---EFPGCSLLKELHVGENQIEM-- 242 (565)
T ss_pred --------HHHH-HHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccccCC---CCCccHHHHHHHhcccHHHh--
Confidence 2222 555555555555444 45555555555555555555554332 34555555555555544321
Q ss_pred CCCCCCcccceEEEcCCCCCCCCCCc-ccccCCCCCEEEccCCccCCCcccccccccccccCCCccCCCCCCcEEEccCC
Q 047929 413 NSKWVPPFQLLALRLRSCHLGPHFPS-WLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNN 491 (790)
Q Consensus 413 ~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n 491 (790)
+|. ...+++++..||+.+|++.+ +|+.++-+.+|+.||+++|
T Consensus 243 -----------------------lpae~~~~L~~l~vLDLRdNklke--------------~Pde~clLrsL~rLDlSNN 285 (565)
T KOG0472|consen 243 -----------------------LPAEHLKHLNSLLVLDLRDNKLKE--------------VPDEICLLRSLERLDLSNN 285 (565)
T ss_pred -----------------------hHHHHhcccccceeeecccccccc--------------CchHHHHhhhhhhhcccCC
Confidence 121 23355667777777777653 3455566677777777777
Q ss_pred cccccCCcCCCCCCCCCEEEccCCcccccCCccccC-----CCCCcE----EECcCCc----ccccCchhhh---hcCCC
Q 047929 492 KFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFEN-----CSQLVA----LDMGENE----FVGNIPTWMG---ERFSR 555 (790)
Q Consensus 492 ~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~-----l~~L~~----L~l~~n~----~~~~~~~~~~---~~~~~ 555 (790)
.++ ..|..++++ +|+.|.+.+|++..+-...+.+ ++-|+. =-++.-+ -....+.+.+ ..+-+
T Consensus 286 ~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~ 363 (565)
T KOG0472|consen 286 DIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIIT 363 (565)
T ss_pred ccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhh
Confidence 777 456667777 7777777777764321111111 000000 0000000 0001111111 12345
Q ss_pred CcEEEcCCCcccccCCccccCC--CCCcEEEccCCcccccCCcchhccccccccC-Cccccceeecccccccceeeeeee
Q 047929 556 LRILNLRSNKLHGIFPIQICHL--SSLQILDVAYNRLSGSVPKCINNFTAMATIG-SHHQVKAIYHASFENDYIVEEISL 632 (790)
Q Consensus 556 L~~L~L~~n~~~~~~~~~~~~l--~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~-~~~~~~~~~~~~~~~~~~~~~~~~ 632 (790)
.+.|++++-+++.+..+.|..- .-...++++.|++. .+|..+..+..+.+.- ..+.
T Consensus 364 tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn-------------------- 422 (565)
T KOG0472|consen 364 TKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNN-------------------- 422 (565)
T ss_pred hhhhcccccccccCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcC--------------------
Confidence 6666666666664332222221 12556777777765 5666655555543211 0000
Q ss_pred eeccchhhhhhcccceeEEEccCccCCCCCCcccccCCCCCEEeCCCCcCCcCCCccccCCCCCCEEeCcCccCccccCc
Q 047929 633 VMKGFMVEYNSILNLVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQ 712 (790)
Q Consensus 633 ~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~ 712 (790)
...+.....+.++.+..|+|++|.+. .+|..++.+..|++|+++.|++. .+|+.+..+..|+.+-.++|++....|+
T Consensus 423 -~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~ 499 (565)
T KOG0472|consen 423 -KISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPS 499 (565)
T ss_pred -ccccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChH
Confidence 01111223345667789999999888 78999999999999999999987 8899888888899998899999988888
Q ss_pred cccCCCCCCEEECcCCcccccCCCCCcCCccCCccccCCcccCC
Q 047929 713 SMSSLSFLNHLNLSDNKLVGKIPSSTQLQSFGASSITGNDLCGA 756 (790)
Q Consensus 713 ~l~~l~~L~~L~l~~n~l~~~~p~~~~~~sl~~l~~~~n~l~~~ 756 (790)
+++.|..|.+||+.+|.+...+|..|...+++++.+.||+|+.+
T Consensus 500 ~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr~P 543 (565)
T KOG0472|consen 500 GLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPFRQP 543 (565)
T ss_pred HhhhhhhcceeccCCCchhhCChhhccccceeEEEecCCccCCC
Confidence 89999999999999999998888889999999999999999833
No 7
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.97 E-value=3.1e-33 Score=296.86 Aligned_cols=274 Identities=25% Similarity=0.312 Sum_probs=151.5
Q ss_pred EEcCCCCCCccccccCcCCCCCCEEeCCCCCCCCCCcCccccCCCCCCEEeCCCCcccccCCCCCCCCCCCcEEECcCCc
Q 047929 52 LNLERSELGGKINPALVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHLDLSGSY 131 (790)
Q Consensus 52 L~L~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~ls~~~ 131 (790)
+|.+++.++ .+|..+..-.+++.|+++.|.+.... .+++.+..+|+.||+++|.+.. +|..+..+.+|+.|+++.|.
T Consensus 3 vd~s~~~l~-~ip~~i~~~~~~~~ln~~~N~~l~~p-l~~~~~~v~L~~l~lsnn~~~~-fp~~it~l~~L~~ln~s~n~ 79 (1081)
T KOG0618|consen 3 VDASDEQLE-LIPEQILNNEALQILNLRRNSLLSRP-LEFVEKRVKLKSLDLSNNQISS-FPIQITLLSHLRQLNLSRNY 79 (1081)
T ss_pred cccccccCc-ccchhhccHHHHHhhhccccccccCc-hHHhhheeeeEEeecccccccc-CCchhhhHHHHhhcccchhh
Confidence 456666665 66767777777888888888776432 3555666679999999998876 88888889999999998887
Q ss_pred ccccccCccccCCCCCCcEEECCCCCCCCCchhHHhhCCCCCCCEEEccCccccccCcccCcCCCCCCEEECCCCCCCCC
Q 047929 132 YELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKT 211 (790)
Q Consensus 132 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~ 211 (790)
|...+. ...++.+|+.+.|.+|..... |..+..+++|++|++++|.+ .
T Consensus 80 i~~vp~-----------------------------s~~~~~~l~~lnL~~n~l~~l-P~~~~~lknl~~LdlS~N~f--~ 127 (1081)
T KOG0618|consen 80 IRSVPS-----------------------------SCSNMRNLQYLNLKNNRLQSL-PASISELKNLQYLDLSFNHF--G 127 (1081)
T ss_pred HhhCch-----------------------------hhhhhhcchhheeccchhhcC-chhHHhhhcccccccchhcc--C
Confidence 665542 333444444444444333322 33455556666666666665 3
Q ss_pred CcchhccCCCCCcEEEccCCcCCCCCCccCCCCCCCcEEeCCCCcCCccccccccCCCCCCEEEccCcccccccCccccc
Q 047929 212 SIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLE 291 (790)
Q Consensus 212 ~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~l~ 291 (790)
.+|.-+..+..+..+..++|..... ++... ++.+++..+.+.+.++..+..+.. .|++.+|.+. .. .+.
T Consensus 128 ~~Pl~i~~lt~~~~~~~s~N~~~~~----lg~~~-ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~~---dls 196 (1081)
T KOG0618|consen 128 PIPLVIEVLTAEEELAASNNEKIQR----LGQTS-IKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-VL---DLS 196 (1081)
T ss_pred CCchhHHhhhHHHHHhhhcchhhhh----hcccc-chhhhhhhhhcccchhcchhhhhe--eeecccchhh-hh---hhh
Confidence 4555555566666666666621111 22222 555555555555555544444443 4666666543 11 144
Q ss_pred CCCCCCEEEccCCCCCCCcchhhhhhhccccCCCCEEEccCCccccccchhhccCCCCcEEEccCcccCCCCCcCcCCCC
Q 047929 292 NLTFIKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVSGPLPPASGELS 371 (790)
Q Consensus 292 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~~~~~~~~~l~ 371 (790)
++++|+.+....|.+..... .-++++.|+...|.++...+. ....+|+.++++++++. .+|.+++.+.
T Consensus 197 ~~~~l~~l~c~rn~ls~l~~---------~g~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~-~lp~wi~~~~ 264 (1081)
T KOG0618|consen 197 NLANLEVLHCERNQLSELEI---------SGPSLTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLS-NLPEWIGACA 264 (1081)
T ss_pred hccchhhhhhhhcccceEEe---------cCcchheeeeccCcceeeccc--cccccceeeecchhhhh-cchHHHHhcc
Confidence 55555555555554432211 123445555555544422111 11234555555555554 3334555555
Q ss_pred CCCEEECcCCcC
Q 047929 372 SLTYLDLSNNNL 383 (790)
Q Consensus 372 ~L~~L~l~~n~~ 383 (790)
+|+.+++.+|.+
T Consensus 265 nle~l~~n~N~l 276 (1081)
T KOG0618|consen 265 NLEALNANHNRL 276 (1081)
T ss_pred cceEecccchhH
Confidence 555555555544
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.97 E-value=2.9e-33 Score=297.10 Aligned_cols=464 Identities=26% Similarity=0.370 Sum_probs=331.9
Q ss_pred CCEEEccCccccccCcccCcCCCCCCEEECCCCCCCCCCcchhccCCCCCcEEEccCCcCCCCCCccCCCCCCCcEEeCC
Q 047929 174 LKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLS 253 (790)
Q Consensus 174 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~ 253 (790)
++.|+++.|.+...+.++..+.-+|+.|++++|.+. .+|..+..+.+|+.|+++.|.|. ..|....++.+|++|.|.
T Consensus 23 ~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~--~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~ 99 (1081)
T KOG0618|consen 23 LQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS--SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLK 99 (1081)
T ss_pred HHhhhccccccccCchHHhhheeeeEEeeccccccc--cCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheec
Confidence 666677777666655555555556888888888773 46777777778888888888777 456677777888888887
Q ss_pred CCcCCccccccccCCCCCCEEEccCcccccccCcccccCCCCCCEEEccCCCCCCCcchhhhhhhccccCCCCEEEccCC
Q 047929 254 YNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQDISEILDIISACAAFELESLFLRGC 333 (790)
Q Consensus 254 ~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 333 (790)
+|.+. ..|..+..+.+|+.|+++.|++. .+|.. +..++.+..+..++|.... ..+-..++.+++..+
T Consensus 100 ~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~-i~~lt~~~~~~~s~N~~~~----------~lg~~~ik~~~l~~n 166 (1081)
T KOG0618|consen 100 NNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLV-IEVLTAEEELAASNNEKIQ----------RLGQTSIKKLDLRLN 166 (1081)
T ss_pred cchhh-cCchhHHhhhcccccccchhccC-CCchh-HHhhhHHHHHhhhcchhhh----------hhccccchhhhhhhh
Confidence 77665 46677777788888888887765 45554 6667777777777762111 111112667777777
Q ss_pred ccccccchhhccCCCCcEEEccCcccCCCCCcCcCCCCCCCEEECcCCcCCCcCChhhhccccccceeecCCCcceeecC
Q 047929 334 KISGQLTNQLGLFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNFKIN 413 (790)
Q Consensus 334 ~~~~~~~~~l~~l~~L~~L~L~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~ 413 (790)
.+.+.++..+..+.. .++|++|.+. . ..+..++.|+.|....|.+.... -..++++.++...|.+. ..
T Consensus 167 ~l~~~~~~~i~~l~~--~ldLr~N~~~-~--~dls~~~~l~~l~c~rn~ls~l~-----~~g~~l~~L~a~~n~l~--~~ 234 (1081)
T KOG0618|consen 167 VLGGSFLIDIYNLTH--QLDLRYNEME-V--LDLSNLANLEVLHCERNQLSELE-----ISGPSLTALYADHNPLT--TL 234 (1081)
T ss_pred hcccchhcchhhhhe--eeecccchhh-h--hhhhhccchhhhhhhhcccceEE-----ecCcchheeeeccCcce--ee
Confidence 766666666655555 5888887775 2 23456677777777777655321 23456777777777665 22
Q ss_pred CCCCCcccceEEEcCCCCCCCCCCcccccCCCCCEEEccCCccCCCcccccccccccccCCCccCCCCCCcEEEccCCcc
Q 047929 414 SKWVPPFQLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKF 493 (790)
Q Consensus 414 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~ 493 (790)
.....+.+++.++++.+.+... |+|+..+.+|+.+...+|.++.+ |..+....+|+.|.+..|.+
T Consensus 235 ~~~p~p~nl~~~dis~n~l~~l-p~wi~~~~nle~l~~n~N~l~~l--------------p~ri~~~~~L~~l~~~~nel 299 (1081)
T KOG0618|consen 235 DVHPVPLNLQYLDISHNNLSNL-PEWIGACANLEALNANHNRLVAL--------------PLRISRITSLVSLSAAYNEL 299 (1081)
T ss_pred ccccccccceeeecchhhhhcc-hHHHHhcccceEecccchhHHhh--------------HHHHhhhhhHHHHHhhhhhh
Confidence 2234466788888888887754 48999999999999999988543 34455667888999999988
Q ss_pred cccCCcCCCCCCCCCEEEccCCcccccCCccccCCCC-CcEEECcCCcccccCchhhhhcCCCCcEEEcCCCcccccCCc
Q 047929 494 TGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQ-LVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPI 572 (790)
Q Consensus 494 ~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~-L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~ 572 (790)
. .+|.....+++|++|+|..|++....+..+..... |..|+.+.|++. ..|..-...++.|+.|++.+|.+++..-.
T Consensus 300 ~-yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~-~lp~~~e~~~~~Lq~LylanN~Ltd~c~p 377 (1081)
T KOG0618|consen 300 E-YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLS-TLPSYEENNHAALQELYLANNHLTDSCFP 377 (1081)
T ss_pred h-hCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhcccc-ccccccchhhHHHHHHHHhcCcccccchh
Confidence 8 56667777899999999999988655544444443 677777777765 55544334567889999999999876666
Q ss_pred cccCCCCCcEEEccCCcccccCCcchhccccccccCCccccceeecccccccceeeeeeeeeccchhhhhhcccceeEEE
Q 047929 573 QICHLSSLQILDVAYNRLSGSVPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSID 652 (790)
Q Consensus 573 ~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 652 (790)
.+.+.+.|+.|++++|++......++.++.. |++|+
T Consensus 378 ~l~~~~hLKVLhLsyNrL~~fpas~~~kle~--------------------------------------------LeeL~ 413 (1081)
T KOG0618|consen 378 VLVNFKHLKVLHLSYNRLNSFPASKLRKLEE--------------------------------------------LEELN 413 (1081)
T ss_pred hhccccceeeeeecccccccCCHHHHhchHH--------------------------------------------hHHHh
Confidence 7788889999999999887333335555444 45899
Q ss_pred ccCccCCCCCCcccccCCCCCEEeCCCCcCCcCCCccccCCCCCCEEeCcCccCcccc-CccccCCCCCCEEECcCCcc
Q 047929 653 ISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKI-PQSMSSLSFLNHLNLSDNKL 730 (790)
Q Consensus 653 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~-p~~l~~l~~L~~L~l~~n~l 730 (790)
||+|+++ .+|..+..++.|++|...+|++. ..| .+..++.|+.+|++.|+++... |..... +.|++||++||.-
T Consensus 414 LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 414 LSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNTR 488 (1081)
T ss_pred cccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCcc
Confidence 9999998 78888899999999999999987 777 6888999999999999987543 433332 7899999999974
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.96 E-value=1.1e-31 Score=272.04 Aligned_cols=254 Identities=26% Similarity=0.355 Sum_probs=135.3
Q ss_pred cCCCCCCEEeCCCCCCCCCCcCccccCCCCCCEEeCCCCcccccCCCCCCCCCCCcEEECcCCcccccccCccccCCCCC
Q 047929 68 VDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHLDLSGSYYELRVEDISWLAGPSL 147 (790)
Q Consensus 68 ~~l~~L~~L~Ls~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~ls~~~~~~~~~~~~~l~~l~~ 147 (790)
+-++-+|-.|+++|.+++..+|..+..+++++-|.|..+++.. +|+.++.|.+|+||.+++|++.....
T Consensus 4 gVLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~-vPeEL~~lqkLEHLs~~HN~L~~vhG---------- 72 (1255)
T KOG0444|consen 4 GVLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQ-VPEELSRLQKLEHLSMAHNQLISVHG---------- 72 (1255)
T ss_pred cccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhhh-ChHHHHHHhhhhhhhhhhhhhHhhhh----------
Confidence 3455666677777777766677777777777777777777765 77777777777777777775432221
Q ss_pred CcEEECCCCCCCCCchhHHhhCCCCCCCEEEccCccccc-cCcccCcCCCCCCEEECCCCCCCCCCcchhccCCCCCcEE
Q 047929 148 LEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHH-FAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFL 226 (790)
Q Consensus 148 L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L 226 (790)
.+..+|.|+.+.++.|++.. -.|..+-++..|.+|||++|++ ...|..+..-+++-.|
T Consensus 73 -------------------ELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL--~EvP~~LE~AKn~iVL 131 (1255)
T KOG0444|consen 73 -------------------ELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQL--REVPTNLEYAKNSIVL 131 (1255)
T ss_pred -------------------hhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhh--hhcchhhhhhcCcEEE
Confidence 33444444544444444322 1222333455555556666555 2355555555555555
Q ss_pred EccCCcCCCCCCccCCCCCCCcEEeCCCCcCCccccccccCCCCCCEEEccCcccccccCcccccCCCCCCEEEccCCCC
Q 047929 227 DLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNEL 306 (790)
Q Consensus 227 ~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~ 306 (790)
+|++|.|.++....|.+++.|-.|++++|++.. .|..+..+.+|++|.+++|++.. .....+..++.|+.|.+++..-
T Consensus 132 NLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~-LPPQ~RRL~~LqtL~Ls~NPL~h-fQLrQLPsmtsL~vLhms~TqR 209 (1255)
T KOG0444|consen 132 NLSYNNIETIPNSLFINLTDLLFLDLSNNRLEM-LPPQIRRLSMLQTLKLSNNPLNH-FQLRQLPSMTSLSVLHMSNTQR 209 (1255)
T ss_pred EcccCccccCCchHHHhhHhHhhhccccchhhh-cCHHHHHHhhhhhhhcCCChhhH-HHHhcCccchhhhhhhcccccc
Confidence 555555554333334555555555555555542 33344455555555555554431 1111123333444444444322
Q ss_pred CCCcchhhhhhhccccCCCCEEEccCCccccccchhhccCCCCcEEEccCcccCCCCCcCcCCCCCCCEEECcCCcCC
Q 047929 307 GQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLN 384 (790)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~ 384 (790)
+ ...+|..+..+.+|..++++.|.+. .+|+.+..+++|+.|++++|+++
T Consensus 210 T----------------------------l~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it 258 (1255)
T KOG0444|consen 210 T----------------------------LDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT 258 (1255)
T ss_pred h----------------------------hhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee
Confidence 1 1123444445555555555555554 44555555555555555555544
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.95 E-value=8.7e-31 Score=265.59 Aligned_cols=368 Identities=24% Similarity=0.288 Sum_probs=250.5
Q ss_pred CCcEEEEEcCCCCCC-ccccccCcCCCCCCEEeCCCCCCCCCCcCccccCCCCCCEEeCCCCcccccCCCCCCCCCCCcE
Q 047929 46 TGHVLELNLERSELG-GKINPALVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMH 124 (790)
Q Consensus 46 ~~~v~~L~L~~~~~~-~~~~~~l~~l~~L~~L~Ls~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~ 124 (790)
.+-||.+|+++|.+. +..|..+.+++.++.|.|...++. .+|+.++++.+|++|.+++|++.. +-..+..|+.||.
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~--~vPeEL~~lqkLEHLs~~HN~L~~-vhGELs~Lp~LRs 82 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE--QVPEELSRLQKLEHLSMAHNQLIS-VHGELSDLPRLRS 82 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh--hChHHHHHHhhhhhhhhhhhhhHh-hhhhhccchhhHH
Confidence 456899999999997 568899999999999999999998 689999999999999999999887 6667899999999
Q ss_pred EECcCCcccccccCccccCCCCCCcEEECCCCCCCCCchhHHhhCCCCCCCEEEccCccccccCcccCcCCCCCCEEECC
Q 047929 125 LDLSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLS 204 (790)
Q Consensus 125 L~ls~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~ 204 (790)
+++++|++... ..+..+-.+..|..||+++|.+...+. .+..-+++-+|++++|+|..++...|.+++.|-.|||+
T Consensus 83 v~~R~N~LKns-GiP~diF~l~dLt~lDLShNqL~EvP~---~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS 158 (1255)
T KOG0444|consen 83 VIVRDNNLKNS-GIPTDIFRLKDLTILDLSHNQLREVPT---NLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLS 158 (1255)
T ss_pred HhhhccccccC-CCCchhcccccceeeecchhhhhhcch---hhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccc
Confidence 99999986532 334556677888888888888887755 66677788888888888888888888888888888888
Q ss_pred CCCCCCCCcchhccCCCCCcEEEccCCcCCCCCCccCCCCCCCcEEeCCCCcCC-ccccccccCCCCCCEEEccCccccc
Q 047929 205 GNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFN-STISDCFSNFDDLEYLSLGYNRLQG 283 (790)
Q Consensus 205 ~~~l~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~~~~~~l~~l~~L~~L~l~~~~l~~ 283 (790)
+|++ ..+|+.+..+.+|++|+|++|.+...--..+..++.|++|.+++.+-+ .-+|..+..+.+|..++++.|.+.
T Consensus 159 ~NrL--e~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp- 235 (1255)
T KOG0444|consen 159 NNRL--EMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP- 235 (1255)
T ss_pred cchh--hhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-
Confidence 8887 567888888888888888888765332233455666777777766432 335666677777777777777765
Q ss_pred ccCcccccCCCCCCEEEccCCCCCCCcchhhhhhhccccCCCCEEEccCCccccccchhhccCCCCcEEEccCcccCCCC
Q 047929 284 TISSIGLENLTFIKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVSGPL 363 (790)
Q Consensus 284 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~~~ 363 (790)
.+|.. +.++++|+.|++++|.++.... ..+...+|++|+++.|.++ .+
T Consensus 236 ~vPec-ly~l~~LrrLNLS~N~iteL~~------------------------------~~~~W~~lEtLNlSrNQLt-~L 283 (1255)
T KOG0444|consen 236 IVPEC-LYKLRNLRRLNLSGNKITELNM------------------------------TEGEWENLETLNLSRNQLT-VL 283 (1255)
T ss_pred cchHH-HhhhhhhheeccCcCceeeeec------------------------------cHHHHhhhhhhccccchhc-cc
Confidence 44444 5666667777776666654322 2233345566666666655 55
Q ss_pred CcCcCCCCCCCEEECcCCcCCCcCChhhhccccccceeecCCCcceeecCCCCCCcccceEEEcCCCCCCCCCCcccccC
Q 047929 364 PPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNFKINSKWVPPFQLLALRLRSCHLGPHFPSWLHSQ 443 (790)
Q Consensus 364 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 443 (790)
|.++..++.|+.|.+.+|+++-......++++..|+.+...+|.+ ...|+.+..|
T Consensus 284 P~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~L-------------------------ElVPEglcRC 338 (1255)
T KOG0444|consen 284 PDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKL-------------------------ELVPEGLCRC 338 (1255)
T ss_pred hHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhcccc-------------------------ccCchhhhhh
Confidence 555556666666666555543221111233333333333333322 1344455556
Q ss_pred CCCCEEEccCCccCCCcccccccccccccCCCccCCCCCCcEEEccCCccc
Q 047929 444 KHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFT 494 (790)
Q Consensus 444 ~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 494 (790)
..|+.|.++.|.+.. +|+.+.-++.|+.|++..|.-.
T Consensus 339 ~kL~kL~L~~NrLiT--------------LPeaIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 339 VKLQKLKLDHNRLIT--------------LPEAIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred HHHHHhcccccceee--------------chhhhhhcCCcceeeccCCcCc
Confidence 666666666665532 3444455556666666665433
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.88 E-value=1.1e-20 Score=226.70 Aligned_cols=340 Identities=17% Similarity=0.225 Sum_probs=167.1
Q ss_pred ccccCCCCCCEEEccCccc------ccccCcccccCC-CCCCEEEccCCCCCCCcchhhhhhhccccCCCCEEEccCCcc
Q 047929 263 DCFSNFDDLEYLSLGYNRL------QGTISSIGLENL-TFIKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKI 335 (790)
Q Consensus 263 ~~l~~l~~L~~L~l~~~~l------~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 335 (790)
.+|..+++|+.|.+..+.. ...+|.. +..+ ++|+.|++.++.+...+.. ..+.+|++|++.++.+
T Consensus 552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~-~~~lp~~Lr~L~~~~~~l~~lP~~-------f~~~~L~~L~L~~s~l 623 (1153)
T PLN03210 552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEG-FDYLPPKLRLLRWDKYPLRCMPSN-------FRPENLVKLQMQGSKL 623 (1153)
T ss_pred HHHhcCccccEEEEecccccccccceeecCcc-hhhcCcccEEEEecCCCCCCCCCc-------CCccCCcEEECcCccc
Confidence 3455555565555543321 1122222 3333 2466666666655444332 1234566666666665
Q ss_pred ccccchhhccCCCCcEEEccCcccCCCCCcCcCCCCCCCEEECcCCcCCCcCChhhhccccccceeecCCCcceeecCCC
Q 047929 336 SGQLTNQLGLFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNFKINSK 415 (790)
Q Consensus 336 ~~~~~~~l~~l~~L~~L~L~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~ 415 (790)
. .++..+..+++|+.++++++.....+| .++.+++|++|++++|......+. .++.+++|+.+++.++.....++..
T Consensus 624 ~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~-si~~L~~L~~L~L~~c~~L~~Lp~~ 700 (1153)
T PLN03210 624 E-KLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPS-SIQYLNKLEDLDMSRCENLEILPTG 700 (1153)
T ss_pred c-ccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccch-hhhccCCCCEEeCCCCCCcCccCCc
Confidence 5 344445556666666666655444454 355666666666666653332222 2334444444444332211111111
Q ss_pred CCCcccceEEEcCCCCCCCCCCcccccCCCCCEEEccCCccCCCcccccccccccccCCCccCCCCCCcEEEccCCcccc
Q 047929 416 WVPPFQLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTG 495 (790)
Q Consensus 416 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 495 (790)
. .+.+|+.|.+++|.....+|.. . ++|+.|++++|.+.
T Consensus 701 i-~l~sL~~L~Lsgc~~L~~~p~~---~-------------------------------------~nL~~L~L~~n~i~- 738 (1153)
T PLN03210 701 I-NLKSLYRLNLSGCSRLKSFPDI---S-------------------------------------TNISWLDLDETAIE- 738 (1153)
T ss_pred C-CCCCCCEEeCCCCCCccccccc---c-------------------------------------CCcCeeecCCCccc-
Confidence 1 2333444444444333333221 1 34444444444443
Q ss_pred cCCcCCCCCCCCCEEEccCCcccc-------cCCccccCCCCCcEEECcCCcccccCchhhhhcCCCCcEEEcCCCcccc
Q 047929 496 SIPISMGTLTSLRSLNLRSNRLSG-------IIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHG 568 (790)
Q Consensus 496 ~~~~~~~~l~~L~~L~L~~n~i~~-------~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~ 568 (790)
.+|..+ .+++|+.|.+.++.... ..+..+...++|+.|++++|.....+|..+. .+++|+.|++++|...+
T Consensus 739 ~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~-~L~~L~~L~Ls~C~~L~ 816 (1153)
T PLN03210 739 EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQ-NLHKLEHLEIENCINLE 816 (1153)
T ss_pred cccccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhh-CCCCCCEEECCCCCCcC
Confidence 233222 24444444444432111 1111122335666666666655555666543 56666666666664433
Q ss_pred cCCccccCCCCCcEEEccCCcccccCCcchhccccccccCCccccceeecccccccceeeeeeeeeccchhhhhhcccce
Q 047929 569 IFPIQICHLSSLQILDVAYNRLSGSVPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLV 648 (790)
Q Consensus 569 ~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 648 (790)
.+|..+ .+++|+.|++++|.....+|.. ..++
T Consensus 817 ~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~-----------------------------------------------~~nL 848 (1153)
T PLN03210 817 TLPTGI-NLESLESLDLSGCSRLRTFPDI-----------------------------------------------STNI 848 (1153)
T ss_pred eeCCCC-CccccCEEECCCCCcccccccc-----------------------------------------------cccc
Confidence 445443 5666666666666543333321 1234
Q ss_pred eEEEccCccCCCCCCcccccCCCCCEEeCCCCcCCcCCCccccCCCCCCEEeCcCccC
Q 047929 649 RSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQI 706 (790)
Q Consensus 649 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l 706 (790)
+.|+|++|.+. .+|..+..+++|+.|++++|+-...+|..+..+++|+.|++++|.-
T Consensus 849 ~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~ 905 (1153)
T PLN03210 849 SDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGA 905 (1153)
T ss_pred CEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcc
Confidence 56666666665 4566666666777777766554445665666666677777666643
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.87 E-value=1.6e-20 Score=225.29 Aligned_cols=315 Identities=21% Similarity=0.230 Sum_probs=220.5
Q ss_pred CCcEEEccCcccCCCCCcCcCCCCCCCEEECcCCcCCCcCChhhhccccccceeecCCCcceeecCCCCCCcccceEEEc
Q 047929 348 NLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNFKINSKWVPPFQLLALRL 427 (790)
Q Consensus 348 ~L~~L~L~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l 427 (790)
+|+.|++.++.+. .+|..+ ...+|+.|++.++.+..... .+..+++|+.++++.+.....++ .+..+++|+.|++
T Consensus 590 ~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~~L~~--~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L 664 (1153)
T PLN03210 590 KLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLEKLWD--GVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKL 664 (1153)
T ss_pred ccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccccccc--ccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEe
Confidence 4666666666554 444444 34566666666665543322 23455666666665543222222 2455678888888
Q ss_pred CCCCCCCCCCcccccCCCCCEEEccCCccCCCcccccccccccccCCCccCCCCCCcEEEccCCcccccCCcCCCCCCCC
Q 047929 428 RSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGTLTSL 507 (790)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L 507 (790)
.+|.....+|..+..+++|+.|++++|.... .+|..+ .+++|+.|++++|...+.+|.. .++|
T Consensus 665 ~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~-------------~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL 727 (1153)
T PLN03210 665 SDCSSLVELPSSIQYLNKLEDLDMSRCENLE-------------ILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNI 727 (1153)
T ss_pred cCCCCccccchhhhccCCCCEEeCCCCCCcC-------------ccCCcC-CCCCCCEEeCCCCCCccccccc---cCCc
Confidence 8888777888888888999999998876332 223322 5788999999998766555532 4678
Q ss_pred CEEEccCCcccccCCccccCCCCCcEEECcCCcccc------cCchhhhhcCCCCcEEEcCCCcccccCCccccCCCCCc
Q 047929 508 RSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVG------NIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQ 581 (790)
Q Consensus 508 ~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~------~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~ 581 (790)
+.|++++|.+... |..+ .+++|+.|.+.++.... .++......+++|+.|++++|.....+|..++++++|+
T Consensus 728 ~~L~L~~n~i~~l-P~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~ 805 (1153)
T PLN03210 728 SWLDLDETAIEEF-PSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLE 805 (1153)
T ss_pred CeeecCCCccccc-cccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCC
Confidence 8999999987643 4333 56788888887653210 11122222457899999999887777888888999999
Q ss_pred EEEccCCcccccCCcchhccccccccCCccccceeecccccccceeeeeeeeeccchhhhhhcccceeEEEccCccCCCC
Q 047929 582 ILDVAYNRLSGSVPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGE 661 (790)
Q Consensus 582 ~L~ls~n~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~ 661 (790)
.|++++|...+.+|..+ + +++|+.|++++|.....
T Consensus 806 ~L~Ls~C~~L~~LP~~~-~--------------------------------------------L~sL~~L~Ls~c~~L~~ 840 (1153)
T PLN03210 806 HLEIENCINLETLPTGI-N--------------------------------------------LESLESLDLSGCSRLRT 840 (1153)
T ss_pred EEECCCCCCcCeeCCCC-C--------------------------------------------ccccCEEECCCCCcccc
Confidence 99999887655566433 2 33467899999876656
Q ss_pred CCcccccCCCCCEEeCCCCcCCcCCCccccCCCCCCEEeCcCccCccccCccccCCCCCCEEECcCCcccccCC
Q 047929 662 IPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLSFLNHLNLSDNKLVGKIP 735 (790)
Q Consensus 662 ~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p 735 (790)
+|.. .++|++|+|++|.++ .+|.++..+++|+.|++++|+-...+|..+..+++|+.+++++|.-...++
T Consensus 841 ~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~ 910 (1153)
T PLN03210 841 FPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEAS 910 (1153)
T ss_pred cccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCccccccc
Confidence 6653 468999999999997 688899999999999999987777888889999999999999997665444
No 13
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.85 E-value=2.2e-23 Score=201.55 Aligned_cols=290 Identities=22% Similarity=0.210 Sum_probs=178.5
Q ss_pred CCCcEEEccCCcCCCCCCccCCCCCCCcEEeCCCCcCCccccccccCCCCCCEEEccC-cccccccCcccccCCCCCCEE
Q 047929 221 SDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGY-NRLQGTISSIGLENLTFIKTL 299 (790)
Q Consensus 221 ~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~~l~~~~~~~~l~~l~~L~~L 299 (790)
+.-..++|..|+|+...|.+|+.+++|+.|++++|.|+.+.|.+|.++++|..|.+.+ |+|+ .++...|..+..++.|
T Consensus 67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~slqrL 145 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSLQRL 145 (498)
T ss_pred CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHHHHH
Confidence 3567788888888887788888888888888888888888888888888888777766 7776 6666667777777777
Q ss_pred EccCCCCCCCcchhhhhhhccccCCCCEEEccCCccccccchhhccCCCCcEEEccCcccCCCCCcCcCCCCCCCEEECc
Q 047929 300 DLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLS 379 (790)
Q Consensus 300 ~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~~~~~~~~~l~~L~~L~l~ 379 (790)
.+.-|.+.....+ .+..++++..|.+.+|.+.......+..+..++.+.+..|.... .-+++.+......
T Consensus 146 llNan~i~Cir~~-----al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~ic-----dCnL~wla~~~a~ 215 (498)
T KOG4237|consen 146 LLNANHINCIRQD-----ALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFIC-----DCNLPWLADDLAM 215 (498)
T ss_pred hcChhhhcchhHH-----HHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCcccc-----ccccchhhhHHhh
Confidence 7766666544443 23344455555555555553333345555556666555554210 0111111111000
Q ss_pred CCcCCCcCChhhhccccccceeecCCCcceeecCCCCCCc-ccceEEEcCCCCCCCCCC-cccccCCCCCEEEccCCccC
Q 047929 380 NNNLNGMISEIHFGNLTELAFFYANGNSVNFKINSKWVPP-FQLLALRLRSCHLGPHFP-SWLHSQKHLSKLDISNTRIS 457 (790)
Q Consensus 380 ~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~i~ 457 (790)
. .+.+++..-..-..+....+.......+... ..+.+-....|......| ..|..+++|++|++++|+++
T Consensus 216 ~--------~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~ 287 (498)
T KOG4237|consen 216 N--------PIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKIT 287 (498)
T ss_pred c--------hhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccc
Confidence 0 0012222211111112222211111111111 111111122232222333 34788889999999999988
Q ss_pred CCcccccccccccccCCCccCCCCCCcEEEccCCcccccCCcCCCCCCCCCEEEccCCcccccCCccccCCCCCcEEECc
Q 047929 458 DIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMG 537 (790)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~ 537 (790)
.+.+.+ |.....+++|.+..|++.......|.++..|+.|+|++|+|+...|..|..+.+|..|++-
T Consensus 288 ~i~~~a-------------Fe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~ 354 (498)
T KOG4237|consen 288 RIEDGA-------------FEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLL 354 (498)
T ss_pred hhhhhh-------------hcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehc
Confidence 765544 4566788889999998886666678888889999999999988888889888899999888
Q ss_pred CCccc
Q 047929 538 ENEFV 542 (790)
Q Consensus 538 ~n~~~ 542 (790)
.|++.
T Consensus 355 ~Np~~ 359 (498)
T KOG4237|consen 355 SNPFN 359 (498)
T ss_pred cCccc
Confidence 87654
No 14
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.84 E-value=7.4e-23 Score=197.91 Aligned_cols=292 Identities=23% Similarity=0.247 Sum_probs=169.9
Q ss_pred CCcEEEEEcCCCCCCccccccCcCCCCCCEEeCCCCCCCCCCcCccccCCCCCCEEeCCC-CcccccCCCCCCCCCCCcE
Q 047929 46 TGHVLELNLERSELGGKINPALVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSG-AGFAGWIPHQLGNLSNLMH 124 (790)
Q Consensus 46 ~~~v~~L~L~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~l~~~~~~l~~L~~L~Ls~-~~~~~~lp~~l~~l~~L~~ 124 (790)
+...++|+|..|+|+...+.+|..+++||.||||+|.|+.+ -|++|.++..|-.|-+-+ |+|+...-..|+.|..|+-
T Consensus 66 P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I-~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqr 144 (498)
T KOG4237|consen 66 PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFI-APDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQR 144 (498)
T ss_pred CCcceEEEeccCCcccCChhhccchhhhceecccccchhhc-ChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHH
Confidence 45667777777777756667777777777777777777766 577777777665554433 6676633345666666666
Q ss_pred EECcCCcccccccCccccCCCCCCcEEECCCCCCCCCchhHHhhCCCCCCCEEEccCccccccCcccCcCCCCCCEEECC
Q 047929 125 LDLSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLS 204 (790)
Q Consensus 125 L~ls~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~ 204 (790)
|.+.-|++..... ..+..++++..|.+..|.+..+...+|..+..++.+.+.
T Consensus 145 LllNan~i~Cir~----------------------------~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA 196 (498)
T KOG4237|consen 145 LLLNANHINCIRQ----------------------------DALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLA 196 (498)
T ss_pred HhcChhhhcchhH----------------------------HHHHHhhhcchhcccchhhhhhccccccchhccchHhhh
Confidence 6665554332211 266777777777777777777777777777777777777
Q ss_pred CCCCCCCCcchhccCCCCCcEEEccCCcCCCCCCccCCCCCCCcEEeCCCCcCCccccccccC-CCCCCEEEccCccccc
Q 047929 205 GNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSN-FDDLEYLSLGYNRLQG 283 (790)
Q Consensus 205 ~~~l~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~-l~~L~~L~l~~~~l~~ 283 (790)
.|.+.. .++++.+..- +. ..|-.++.........+.+.++..+.+..|.. +..+..=-.+.+...+
T Consensus 197 ~np~ic------dCnL~wla~~-~a------~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~ 263 (498)
T KOG4237|consen 197 QNPFIC------DCNLPWLADD-LA------MNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDS 263 (498)
T ss_pred cCcccc------ccccchhhhH-Hh------hchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCC
Confidence 765311 1111111110 00 11112222222222233333333222222211 1111111112222222
Q ss_pred ccCcccccCCCCCCEEEccCCCCCCCcchhhhhhhccccCCCCEEEccCCccccccchhhccCCCCcEEEccCcccCCCC
Q 047929 284 TISSIGLENLTFIKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVSGPL 363 (790)
Q Consensus 284 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~~~ 363 (790)
..|...|..+++|++|++++|.++..... .+.+...+++|.+..|++.......|.++..|+.|+|++|+|+...
T Consensus 264 ~cP~~cf~~L~~L~~lnlsnN~i~~i~~~-----aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~ 338 (498)
T KOG4237|consen 264 ICPAKCFKKLPNLRKLNLSNNKITRIEDG-----AFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVA 338 (498)
T ss_pred cChHHHHhhcccceEeccCCCccchhhhh-----hhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEe
Confidence 34444466666666666666666655554 3344556677777777666555566777888888888888888788
Q ss_pred CcCcCCCCCCCEEECcCCcCC
Q 047929 364 PPASGELSSLTYLDLSNNNLN 384 (790)
Q Consensus 364 ~~~~~~l~~L~~L~l~~n~~~ 384 (790)
|.+|..+.+|.+|++-.|++.
T Consensus 339 ~~aF~~~~~l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 339 PGAFQTLFSLSTLNLLSNPFN 359 (498)
T ss_pred cccccccceeeeeehccCccc
Confidence 888888888888888777654
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.79 E-value=2.3e-18 Score=190.95 Aligned_cols=80 Identities=25% Similarity=0.376 Sum_probs=51.0
Q ss_pred eeEEEccCccCCCCCCcccccCCCCCEEeCCCCcCCcCCCccccCCCCCCEEeCcCccCccccCccccCCCCCCEEECcC
Q 047929 648 VRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLSFLNHLNLSD 727 (790)
Q Consensus 648 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~ 727 (790)
|+.|++++|.+. .+|.. .++|+.|++++|.++ .+|.. ..+|+.|++++|+++ .+|..+..+++|+.|++++
T Consensus 384 L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~ 454 (788)
T PRK15387 384 LKELIVSGNRLT-SLPVL---PSELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEG 454 (788)
T ss_pred cceEEecCCccc-CCCCc---ccCCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCC
Confidence 446666677666 34432 246777777777766 34532 245667777777776 5677777777777777777
Q ss_pred CcccccCCC
Q 047929 728 NKLVGKIPS 736 (790)
Q Consensus 728 n~l~~~~p~ 736 (790)
|++.+.+|.
T Consensus 455 N~Ls~~~~~ 463 (788)
T PRK15387 455 NPLSERTLQ 463 (788)
T ss_pred CCCCchHHH
Confidence 777765544
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.74 E-value=3e-17 Score=182.18 Aligned_cols=260 Identities=25% Similarity=0.271 Sum_probs=152.6
Q ss_pred cEEEEEcCCCCCCccccccCcCCCCCCEEeCCCCCCCCCCcCccccCCCCCCEEeCCCCcccccCCCCCCCCCCCcEEEC
Q 047929 48 HVLELNLERSELGGKINPALVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHLDL 127 (790)
Q Consensus 48 ~v~~L~L~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~l 127 (790)
.-..|+++++.++ .+|+.+. ++|+.|++++|.++ .+|. .+++|++|++++|+++. +|.. .++|++|++
T Consensus 202 ~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt--~LP~---lp~~Lk~LdLs~N~Lts-LP~l---p~sL~~L~L 269 (788)
T PRK15387 202 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT--SLPA---LPPELRTLEVSGNQLTS-LPVL---PPGLLELSI 269 (788)
T ss_pred CCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC--CCCC---CCCCCcEEEecCCccCc-ccCc---ccccceeec
Confidence 3445777777776 5666554 37788888887777 4554 24677888888877775 5542 356777777
Q ss_pred cCCcccccccCccccCCCCCCcEEECCCCCCCCCchhHHhhCCCCCCCEEEccCccccccCcccCcCCCCCCEEECCCCC
Q 047929 128 SGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNL 207 (790)
Q Consensus 128 s~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~ 207 (790)
++|.+...+. ..++|+.|++++|.+..++. ..++|+.|++++|.
T Consensus 270 s~N~L~~Lp~--------------------------------lp~~L~~L~Ls~N~Lt~LP~----~p~~L~~LdLS~N~ 313 (788)
T PRK15387 270 FSNPLTHLPA--------------------------------LPSGLCKLWIFGNQLTSLPV----LPPGLQELSVSDNQ 313 (788)
T ss_pred cCCchhhhhh--------------------------------chhhcCEEECcCCccccccc----cccccceeECCCCc
Confidence 7765442221 11334455555555554432 12456666666665
Q ss_pred CCCCCcchhccCCCCCcEEEccCCcCCCCCCccCCCCCCCcEEeCCCCcCCccccccccCCCCCCEEEccCcccccccCc
Q 047929 208 FGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISS 287 (790)
Q Consensus 208 l~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~ 287 (790)
+.. +|.. ..+|+.|++++|.+.+ +|. + ..+|++|++++|++... |.. ..+|+.|++++|.+. .+|.
T Consensus 314 L~~--Lp~l---p~~L~~L~Ls~N~L~~-LP~-l--p~~Lq~LdLS~N~Ls~L-P~l---p~~L~~L~Ls~N~L~-~LP~ 379 (788)
T PRK15387 314 LAS--LPAL---PSELCKLWAYNNQLTS-LPT-L--PSGLQELSVSDNQLASL-PTL---PSELYKLWAYNNRLT-SLPA 379 (788)
T ss_pred ccc--CCCC---cccccccccccCcccc-ccc-c--ccccceEecCCCccCCC-CCC---Ccccceehhhccccc-cCcc
Confidence 532 3432 2345556666666553 332 1 13566666666666542 221 245566666666665 3433
Q ss_pred ccccCCCCCCEEEccCCCCCCCcchhhhhhhccccCCCCEEEccCCccccccchhhccCCCCcEEEccCcccCCCCCcCc
Q 047929 288 IGLENLTFIKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVSGPLPPAS 367 (790)
Q Consensus 288 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~~~~~~~ 367 (790)
. ..+|+.|++++|.+...+. ..++|+.|++++|.+.. +|.. ..+|+.|++++|.++ .+|..+
T Consensus 380 l----~~~L~~LdLs~N~Lt~LP~---------l~s~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl 441 (788)
T PRK15387 380 L----PSGLKELIVSGNRLTSLPV---------LPSELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESL 441 (788)
T ss_pred c----ccccceEEecCCcccCCCC---------cccCCCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHH
Confidence 2 2456677777776654322 12457777777777764 3432 245677888888876 567777
Q ss_pred CCCCCCCEEECcCCcCCCcC
Q 047929 368 GELSSLTYLDLSNNNLNGMI 387 (790)
Q Consensus 368 ~~l~~L~~L~l~~n~~~~~~ 387 (790)
..+++|+.|++++|++++..
T Consensus 442 ~~L~~L~~LdLs~N~Ls~~~ 461 (788)
T PRK15387 442 IHLSSETTVNLEGNPLSERT 461 (788)
T ss_pred hhccCCCeEECCCCCCCchH
Confidence 77888888888888877543
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.69 E-value=3.7e-16 Score=174.84 Aligned_cols=309 Identities=18% Similarity=0.219 Sum_probs=169.2
Q ss_pred HHHHHHHHHhhcCCCCCCCCCC----CCCCCCCcccCc----------------eeecCCCCcEEEEEcCCCCCCccc--
Q 047929 6 SERVALIKLKQDFKDPSNHLAS----WIGDVDCCEWGG----------------VVCNNITGHVLELNLERSELGGKI-- 63 (790)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~----w~~~~~~~~~~~----------------~~c~~~~~~v~~L~L~~~~~~~~~-- 63 (790)
++...++++.+-+..|. +..+ |..+++.|.-+. |.|. .+.|+++...+.......
T Consensus 63 ~~~~~~~~~~~~l~~p~-~~~~~~~~~~~~~~fc~~~~~~~~~l~~~~~~~~~tv~~~--~~~vt~l~~~g~~~~~~~~~ 139 (754)
T PRK15370 63 EEIKSKFECLRMLAFPA-YADNIQYSRGGADQYCILSENSQEILSIVFNTEGYTVEGG--GKSVTYTRVTESEQASSASG 139 (754)
T ss_pred HHHHHHHHHHHHhcCCc-hhhccccccCCCCcccccCCcchhhheeeecCCceEEecC--CCcccccccccccccccCCC
Confidence 57778899998886554 4444 977788885443 5665 568888887764322110
Q ss_pred cccC-------------------------------cCCCCCCEEeCCCCCCCCCCcCccccCCCCCCEEeCCCCcccccC
Q 047929 64 NPAL-------------------------------VDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWI 112 (790)
Q Consensus 64 ~~~l-------------------------------~~l~~L~~L~Ls~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~l 112 (790)
+... +-..+...|+++++.++ .+|..+. ++|+.|++++|+++. +
T Consensus 140 ~~~~~~~~~~w~~w~~~~~~~~~~~r~~a~~r~~~Cl~~~~~~L~L~~~~Lt--sLP~~Ip--~~L~~L~Ls~N~Lts-L 214 (754)
T PRK15370 140 SKDAVNYELIWSEWVKEAPAKEAANREEAVQRMRDCLKNNKTELRLKILGLT--TIPACIP--EQITTLILDNNELKS-L 214 (754)
T ss_pred CCChhhHHHHHHHHHhcCCCCccccHHHHHHHHHhhcccCceEEEeCCCCcC--cCCcccc--cCCcEEEecCCCCCc-C
Confidence 0000 00123444555555444 2344332 345555555555553 4
Q ss_pred CCCCCCCCCCcEEECcCCcccccccCccccCCCCCCcEEECCCCCCCCCchhHHhhCCCCCCCEEEccCccccccCcccC
Q 047929 113 PHQLGNLSNLMHLDLSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLAS 192 (790)
Q Consensus 113 p~~l~~l~~L~~L~ls~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l 192 (790)
|..+. .+|++|++++|. +...+. .+ .+.|+.|++++|.+..++.. +
T Consensus 215 P~~l~--~nL~~L~Ls~N~--------------------------LtsLP~---~l--~~~L~~L~Ls~N~L~~LP~~-l 260 (754)
T PRK15370 215 PENLQ--GNIKTLYANSNQ--------------------------LTSIPA---TL--PDTIQEMELSINRITELPER-L 260 (754)
T ss_pred Chhhc--cCCCEEECCCCc--------------------------cccCCh---hh--hccccEEECcCCccCcCChh-H
Confidence 44332 345555555544 433321 11 13466666666666554332 2
Q ss_pred cCCCCCCEEECCCCCCCCCCcchhccCCCCCcEEEccCCcCCCCCCccCCCCCCCcEEeCCCCcCCccccccccCCCCCC
Q 047929 193 ANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLE 272 (790)
Q Consensus 193 ~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 272 (790)
. .+|+.|++++|.+. .+|..+. ++|+.|++++|.+.. +|..+. +.|+.|++++|.+... |..+ .++|+
T Consensus 261 ~--s~L~~L~Ls~N~L~--~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~L-P~~l--~~sL~ 328 (754)
T PRK15370 261 P--SALQSLDLFHNKIS--CLPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTAL-PETL--PPGLK 328 (754)
T ss_pred h--CCCCEEECcCCccC--ccccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCccccC-Cccc--cccce
Confidence 1 35666666666663 3555442 366677777766663 443332 3566667777666543 3222 24667
Q ss_pred EEEccCcccccccCcccccCCCCCCEEEccCCCCCCCcchhhhhhhccccCCCCEEEccCCccccccchhhccCCCCcEE
Q 047929 273 YLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTL 352 (790)
Q Consensus 273 ~L~l~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 352 (790)
.|++++|.+++ +|.. + .++|+.|++++|.+...+.. + .++|+.|++++|.++. +|..+. ..|+.|
T Consensus 329 ~L~Ls~N~Lt~-LP~~-l--~~sL~~L~Ls~N~L~~LP~~------l--p~~L~~LdLs~N~Lt~-LP~~l~--~sL~~L 393 (754)
T PRK15370 329 TLEAGENALTS-LPAS-L--PPELQVLDVSKNQITVLPET------L--PPTITTLDVSRNALTN-LPENLP--AALQIM 393 (754)
T ss_pred eccccCCcccc-CChh-h--cCcccEEECCCCCCCcCChh------h--cCCcCEEECCCCcCCC-CCHhHH--HHHHHH
Confidence 77777776653 4432 2 25677777777766543221 1 2467777777777763 444333 357777
Q ss_pred EccCcccCCCCCcCc----CCCCCCCEEECcCCcCC
Q 047929 353 ALSDNSVSGPLPPAS----GELSSLTYLDLSNNNLN 384 (790)
Q Consensus 353 ~L~~~~i~~~~~~~~----~~l~~L~~L~l~~n~~~ 384 (790)
++++|++. .+|..+ ..++.+..|++.+|++.
T Consensus 394 dLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 394 QASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred hhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 77777776 444433 34467778888888765
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.68 E-value=1.7e-16 Score=177.57 Aligned_cols=77 Identities=18% Similarity=0.399 Sum_probs=41.5
Q ss_pred eeEEEccCccCCCCCCcccccCCCCCEEeCCCCcCCcCCCccccCCCCCCEEeCcCccCccccCcccc----CCCCCCEE
Q 047929 648 VRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMS----SLSFLNHL 723 (790)
Q Consensus 648 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~----~l~~L~~L 723 (790)
|+.|++++|++. .+|..+ .++|++|+|++|.++ .+|..+. .+|+.|++++|++. .+|..+. .++.+..|
T Consensus 348 L~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L 420 (754)
T PRK15370 348 LQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRI 420 (754)
T ss_pred ccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEE
Confidence 345555555554 344433 245666666666665 3444443 35666666666665 3444332 23556666
Q ss_pred ECcCCccc
Q 047929 724 NLSDNKLV 731 (790)
Q Consensus 724 ~l~~n~l~ 731 (790)
++.+|++.
T Consensus 421 ~L~~Npls 428 (754)
T PRK15370 421 IVEYNPFS 428 (754)
T ss_pred EeeCCCcc
Confidence 66666654
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.63 E-value=3.1e-17 Score=171.56 Aligned_cols=284 Identities=25% Similarity=0.228 Sum_probs=125.9
Q ss_pred EEcCCCCCC-ccccccCcCCCCCCEEeCCCCCCCCC---CcCccccCCCCCCEEeCCCCcccc------cCCCCCCCCCC
Q 047929 52 LNLERSELG-GKINPALVDLKHLNLLDLSGNDFQGI---QIPEYIGSMDNLRYLNLSGAGFAG------WIPHQLGNLSN 121 (790)
Q Consensus 52 L~L~~~~~~-~~~~~~l~~l~~L~~L~Ls~~~~~~~---~l~~~~~~l~~L~~L~Ls~~~~~~------~lp~~l~~l~~ 121 (790)
|+|.++.+. ......+..+.+|++|+++++.+.+. .+++.+...+.|++|+++++.+.+ .++..+.++++
T Consensus 3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~ 82 (319)
T cd00116 3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCG 82 (319)
T ss_pred cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCc
Confidence 455555554 23334455556677777776665321 234445555666666666665541 12334455666
Q ss_pred CcEEECcCCccccc-ccCcccc-CCCCCCcEEECCCCCCCCC--chhHHhhCCC-CCCCEEEccCccccccCcccCcCCC
Q 047929 122 LMHLDLSGSYYELR-VEDISWL-AGPSLLEHLDTSDVDLIKA--SDWLLVINSL-PSLKVLKLFSCKLHHFAPLASANFS 196 (790)
Q Consensus 122 L~~L~ls~~~~~~~-~~~~~~l-~~l~~L~~L~l~~~~~~~~--~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~l~~l~ 196 (790)
|++|++++|.+... ...+..+ .. ++|++|+++++.+... ..+...+..+ ++|++|++++|.+......
T Consensus 83 L~~L~l~~~~~~~~~~~~~~~l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~------ 155 (319)
T cd00116 83 LQELDLSDNALGPDGCGVLESLLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCE------ 155 (319)
T ss_pred eeEEEccCCCCChhHHHHHHHHhcc-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHH------
Confidence 66666666554311 1111111 11 3344444444444322 1112233333 4444444444444311100
Q ss_pred CCCEEECCCCCCCCCCcchhccCCCCCcEEEccCCcCCCC----CCccCCCCCCCcEEeCCCCcCCccc----cccccCC
Q 047929 197 SLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGP----IPDGFKNLTSLRYLDLSYNQFNSTI----SDCFSNF 268 (790)
Q Consensus 197 ~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L~l~~~~~~~~----~p~~~~~l~~L~~L~l~~~~~~~~~----~~~l~~l 268 (790)
.++..+..+.+|++|++++|.+.+. ++..+..+++|++|++++|.+.+.. ...+..+
T Consensus 156 ---------------~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~ 220 (319)
T cd00116 156 ---------------ALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASL 220 (319)
T ss_pred ---------------HHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhccc
Confidence 1122233344455555555544321 1122333345555555555443221 2233445
Q ss_pred CCCCEEEccCcccccccCccc----ccCCCCCCEEEccCCCCCCCcchhhhhhhccccCCCCEEEccCCccccc----cc
Q 047929 269 DDLEYLSLGYNRLQGTISSIG----LENLTFIKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQ----LT 340 (790)
Q Consensus 269 ~~L~~L~l~~~~l~~~~~~~~----l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~----~~ 340 (790)
++|++|++++|.+.+...... ....+.|++|++++|.++........ ......++|+.+++++|.+... ..
T Consensus 221 ~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~-~~~~~~~~L~~l~l~~N~l~~~~~~~~~ 299 (319)
T cd00116 221 KSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLA-EVLAEKESLLELDLRGNKFGEEGAQLLA 299 (319)
T ss_pred CCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHH-HHHhcCCCccEEECCCCCCcHHHHHHHH
Confidence 555555555555442111110 11235566666666655422111110 0223345666677777666643 22
Q ss_pred hhhccC-CCCcEEEccCcc
Q 047929 341 NQLGLF-KNLHTLALSDNS 358 (790)
Q Consensus 341 ~~l~~l-~~L~~L~L~~~~ 358 (790)
..+... +.++.+++.++.
T Consensus 300 ~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 300 ESLLEPGNELESLWVKDDS 318 (319)
T ss_pred HHHhhcCCchhhcccCCCC
Confidence 233333 567777776654
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.62 E-value=1e-16 Score=167.70 Aligned_cols=264 Identities=22% Similarity=0.205 Sum_probs=142.3
Q ss_pred EEeCCCCCCCCCCcCccccCCCCCCEEeCCCCccccc----CCCCCCCCCCCcEEECcCCcccccccCccccCCCCCCcE
Q 047929 75 LLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGW----IPHQLGNLSNLMHLDLSGSYYELRVEDISWLAGPSLLEH 150 (790)
Q Consensus 75 ~L~Ls~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~----lp~~l~~l~~L~~L~ls~~~~~~~~~~~~~l~~l~~L~~ 150 (790)
.|+|.++.+.+......+..+.+|+.|+++++.++.. ++..+...++|++++++++.+.......
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~----------- 70 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGL----------- 70 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHH-----------
Confidence 4677777777555667777788899999999887442 4555667777888888776533100000
Q ss_pred EECCCCCCCCCchhHHhhCCCCCCCEEEccCccccccCcccCcCC---CCCCEEECCCCCCCCCCc---chhccCC-CCC
Q 047929 151 LDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLASANF---SSLNALDLSGNLFGKTSI---PSWVFGL-SDL 223 (790)
Q Consensus 151 L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l---~~L~~L~L~~~~l~~~~l---p~~l~~l-~~L 223 (790)
......+..+++|+.|++++|.+....+..+..+ ++|++|++++|.+.+... ...+..+ ++|
T Consensus 71 -----------~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L 139 (319)
T cd00116 71 -----------QSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPAL 139 (319)
T ss_pred -----------HHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCc
Confidence 1122345556666666666666654333333333 337777777776643111 2233445 677
Q ss_pred cEEEccCCcCCCC----CCccCCCCCCCcEEeCCCCcCCcc----ccccccCCCCCCEEEccCcccccccCc---ccccC
Q 047929 224 VFLDLSSNIFRGP----IPDGFKNLTSLRYLDLSYNQFNST----ISDCFSNFDDLEYLSLGYNRLQGTISS---IGLEN 292 (790)
Q Consensus 224 ~~L~l~~~~~~~~----~p~~~~~l~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~l~~~~~~---~~l~~ 292 (790)
+.|++++|.+.+. ++..+..+++|++|++++|.+.+. .+..+..+++|++|++++|.+.+.... ..+..
T Consensus 140 ~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~ 219 (319)
T cd00116 140 EKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLAS 219 (319)
T ss_pred eEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcc
Confidence 7777777776631 233455666777777777776632 222344456777777777765422111 11445
Q ss_pred CCCCCEEEccCCCCCCCcchhhhhhhccccCCCCEEEccCCcccc----ccchhhccCCCCcEEEccCcccC
Q 047929 293 LTFIKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISG----QLTNQLGLFKNLHTLALSDNSVS 360 (790)
Q Consensus 293 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~----~~~~~l~~l~~L~~L~L~~~~i~ 360 (790)
+++|++|++++|.+................+.|++|++++|.++. .+...+..+++|+.+++++|.+.
T Consensus 220 ~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~ 291 (319)
T cd00116 220 LKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFG 291 (319)
T ss_pred cCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCc
Confidence 566666666666554311110000000012455555555555541 11222333445555555555554
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.62 E-value=9e-18 Score=143.83 Aligned_cols=184 Identities=27% Similarity=0.541 Sum_probs=142.8
Q ss_pred CCCCCCCEEEccCCcccccCCccccCCCCCcEEECcCCcccccCchhhhhcCCCCcEEEcCCCcccccCCccccCCCCCc
Q 047929 502 GTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQ 581 (790)
Q Consensus 502 ~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~ 581 (790)
..+.++++|.+++|+++. .|..+..+.+|+.|++++|++. .+|..+. .++.|+.|+++-|++. ..|.+|+.+|.|+
T Consensus 30 f~~s~ITrLtLSHNKl~~-vppnia~l~nlevln~~nnqie-~lp~~is-sl~klr~lnvgmnrl~-~lprgfgs~p~le 105 (264)
T KOG0617|consen 30 FNMSNITRLTLSHNKLTV-VPPNIAELKNLEVLNLSNNQIE-ELPTSIS-SLPKLRILNVGMNRLN-ILPRGFGSFPALE 105 (264)
T ss_pred cchhhhhhhhcccCceee-cCCcHHHhhhhhhhhcccchhh-hcChhhh-hchhhhheecchhhhh-cCccccCCCchhh
Confidence 346778888888888884 4456778888888888888887 7888775 7899999999999887 7899999999999
Q ss_pred EEEccCCcccc-cCCcchhccccccccCCccccceeecccccccceeeeeeeeeccchhhhhhcccceeEEEccCccCCC
Q 047929 582 ILDVAYNRLSG-SVPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSG 660 (790)
Q Consensus 582 ~L~ls~n~l~~-~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~ 660 (790)
.||+.+|++.+ .+|..|-.++. |+.|+|+.|.+.
T Consensus 106 vldltynnl~e~~lpgnff~m~t--------------------------------------------lralyl~dndfe- 140 (264)
T KOG0617|consen 106 VLDLTYNNLNENSLPGNFFYMTT--------------------------------------------LRALYLGDNDFE- 140 (264)
T ss_pred hhhccccccccccCCcchhHHHH--------------------------------------------HHHHHhcCCCcc-
Confidence 99999998864 45554443333 346778888887
Q ss_pred CCCcccccCCCCCEEeCCCCcCCcCCCccccCCCCCCEEeCcCccCccccCccccCCC---CCCEEECcCCcccccCCC
Q 047929 661 EIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLS---FLNHLNLSDNKLVGKIPS 736 (790)
Q Consensus 661 ~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~---~L~~L~l~~n~l~~~~p~ 736 (790)
.+|..++++++|+.|.+++|.+. .+|..++.++.|++|++.+|+++ .+|..++.+. +=+.+.+.+||....|.+
T Consensus 141 ~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l~l~~~k~v~r~E~NPwv~pIae 217 (264)
T KOG0617|consen 141 ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANLDLVGNKQVMRMEENPWVNPIAE 217 (264)
T ss_pred cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhhhhhhhHHHHhhhhCCCCChHHH
Confidence 78888889999999999999887 78888888999999999999988 5666666553 234566777877655543
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.50 E-value=3.9e-16 Score=133.88 Aligned_cols=166 Identities=27% Similarity=0.529 Sum_probs=141.2
Q ss_pred ccCCCCCcEEECcCCcccccCchhhhhcCCCCcEEEcCCCcccccCCccccCCCCCcEEEccCCcccccCCcchhccccc
Q 047929 525 FENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCINNFTAM 604 (790)
Q Consensus 525 l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L 604 (790)
+-.+..++.|.+++|+++ .+|..+. .+.+|+.|++++|+++ ..|..+..++.|+.|+++-|++. .+|..|++++.|
T Consensus 29 Lf~~s~ITrLtLSHNKl~-~vppnia-~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~l 104 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT-VVPPNIA-ELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPAL 104 (264)
T ss_pred ccchhhhhhhhcccCcee-ecCCcHH-Hhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchh
Confidence 334567788899999988 6676675 6889999999999998 56788899999999999988876 778888777665
Q ss_pred cccCCccccceeecccccccceeeeeeeeeccchhhhhhcccceeEEEccCccCCC-CCCcccccCCCCCEEeCCCCcCC
Q 047929 605 ATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSG-EIPMEVTNLKGLQSLNLSHNSFI 683 (790)
Q Consensus 605 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~ 683 (790)
+.|||++|++.. .+|..|..++.|+.|++++|.+.
T Consensus 105 --------------------------------------------evldltynnl~e~~lpgnff~m~tlralyl~dndfe 140 (264)
T KOG0617|consen 105 --------------------------------------------EVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE 140 (264)
T ss_pred --------------------------------------------hhhhccccccccccCCcchhHHHHHHHHHhcCCCcc
Confidence 478999998864 67888889999999999999997
Q ss_pred cCCCccccCCCCCCEEeCcCccCccccCccccCCCCCCEEECcCCcccccCCCCCcC
Q 047929 684 GKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLSFLNHLNLSDNKLVGKIPSSTQL 740 (790)
Q Consensus 684 ~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~~ 740 (790)
.+|...+.+++||.|.+.+|.+. .+|..++.++.|++|.+.+|++.-.+|+.+++
T Consensus 141 -~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~vlppel~~l 195 (264)
T KOG0617|consen 141 -ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLTVLPPELANL 195 (264)
T ss_pred -cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceeeecChhhhhh
Confidence 88888999999999999999998 78999999999999999999998777766554
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.27 E-value=2.2e-11 Score=136.49 Aligned_cols=126 Identities=36% Similarity=0.582 Sum_probs=109.0
Q ss_pred hHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCc----ccCceeecC--CC--CcEEEEEcCCCCCCccccccCcCCCCCCE
Q 047929 4 LESERVALIKLKQDFKDPSNHLASWIGDVDCC----EWGGVVCNN--IT--GHVLELNLERSELGGKINPALVDLKHLNL 75 (790)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~----~~~~~~c~~--~~--~~v~~L~L~~~~~~~~~~~~l~~l~~L~~ 75 (790)
...|..||.++|+++.++.. .+|.. ..|+ .|.|+.|.. .. .+|+.|+|+++.+.+.+|..+.++++|+.
T Consensus 370 ~~~~~~aL~~~k~~~~~~~~--~~W~g-~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~~i~~L~~L~~ 446 (623)
T PLN03150 370 LLEEVSALQTLKSSLGLPLR--FGWNG-DPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQS 446 (623)
T ss_pred CchHHHHHHHHHHhcCCccc--CCCCC-CCCCCcccccccceeeccCCCCceEEEEEECCCCCccccCCHHHhCCCCCCE
Confidence 34688999999999976542 48954 3342 799999952 11 35999999999999999999999999999
Q ss_pred EeCCCCCCCCCCcCccccCCCCCCEEeCCCCcccccCCCCCCCCCCCcEEECcCCccc
Q 047929 76 LDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHLDLSGSYYE 133 (790)
Q Consensus 76 L~Ls~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~ls~~~~~ 133 (790)
|+|++|.+.+. +|..++.+++|++|+|++|++++.+|..++++++|++|++++|.+.
T Consensus 447 L~Ls~N~l~g~-iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~ 503 (623)
T PLN03150 447 INLSGNSIRGN-IPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLS 503 (623)
T ss_pred EECCCCcccCc-CChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCccc
Confidence 99999999886 8999999999999999999999999999999999999999999754
No 24
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.17 E-value=5.9e-13 Score=135.96 Aligned_cols=192 Identities=29% Similarity=0.437 Sum_probs=159.9
Q ss_pred CCCCCEEEccCCcccccCCccccCCCCCcEEECcCCcccccCchhhhhcCCCCcEEEcCCCcccccCCccccCCCCCcEE
Q 047929 504 LTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQIL 583 (790)
Q Consensus 504 l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L 583 (790)
+.--...+++.|++. ..|..+..+-.|+.+.++.|.+. .+|..+. .+..|++||++.|+++ ..|..+|.|| |+.|
T Consensus 74 ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~-~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvl 148 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAIC-NLEALTFLDLSSNQLS-HLPDGLCDLP-LKVL 148 (722)
T ss_pred ccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhh-hhhHHHHhhhccchhh-cCChhhhcCc-ceeE
Confidence 455567889999988 56777777888999999999887 7888876 7899999999999998 6788888887 9999
Q ss_pred EccCCcccccCCcchhccccccccCCccccceeecccccccceeeeeeeeeccchhhhhhcccceeEEEccCccCCCCCC
Q 047929 584 DVAYNRLSGSVPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGEIP 663 (790)
Q Consensus 584 ~ls~n~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 663 (790)
-+++|+++ .+|+.++.+.. |..||.++|.+. .+|
T Consensus 149 i~sNNkl~-~lp~~ig~~~t--------------------------------------------l~~ld~s~nei~-slp 182 (722)
T KOG0532|consen 149 IVSNNKLT-SLPEEIGLLPT--------------------------------------------LAHLDVSKNEIQ-SLP 182 (722)
T ss_pred EEecCccc-cCCcccccchh--------------------------------------------HHHhhhhhhhhh-hch
Confidence 99999987 77776664333 357899999998 788
Q ss_pred cccccCCCCCEEeCCCCcCCcCCCccccCCCCCCEEeCcCccCccccCccccCCCCCCEEECcCCcccccCCCC----Cc
Q 047929 664 MEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLSFLNHLNLSDNKLVGKIPSS----TQ 739 (790)
Q Consensus 664 ~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~----~~ 739 (790)
..++++.+|+.|.++.|.+. .+|+.+..| .|..||+++|++. .+|-.|..|..|++|.|.+||+. ++|.. |.
T Consensus 183 sql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGk 258 (722)
T KOG0532|consen 183 SQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGK 258 (722)
T ss_pred HHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHHhccc
Confidence 88999999999999999998 667777755 8999999999999 79999999999999999999997 45532 55
Q ss_pred CCccCCccccC
Q 047929 740 LQSFGASSITG 750 (790)
Q Consensus 740 ~~sl~~l~~~~ 750 (790)
..-|+.|++.-
T Consensus 259 VHIFKyL~~qA 269 (722)
T KOG0532|consen 259 VHIFKYLSTQA 269 (722)
T ss_pred eeeeeeecchh
Confidence 66677887776
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.17 E-value=8.2e-13 Score=134.93 Aligned_cols=196 Identities=27% Similarity=0.438 Sum_probs=163.6
Q ss_pred CCCCCcEEEccCCcccccCCcCCCCCCCCCEEEccCCcccccCCccccCCCCCcEEECcCCcccccCchhhhhcCCCCcE
Q 047929 479 NWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRI 558 (790)
Q Consensus 479 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~ 558 (790)
.+..-...+++.|++. .+|..+..+..|+.+.++.|.+. ..|..+..+..|+.++++.|++. .+|..++ .--|+.
T Consensus 73 ~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC--~lpLkv 147 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLC--DLPLKV 147 (722)
T ss_pred cccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhh--cCccee
Confidence 4556677899999998 68888888999999999999988 56778889999999999999998 7888775 345999
Q ss_pred EEcCCCcccccCCccccCCCCCcEEEccCCcccccCCcchhccccccccCCccccceeecccccccceeeeeeeeeccch
Q 047929 559 LNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFM 638 (790)
Q Consensus 559 L~L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 638 (790)
|-+++|+++ ..|+.++..+.|..||.++|.+. .+|..+..+.+|
T Consensus 148 li~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~sl---------------------------------- 191 (722)
T KOG0532|consen 148 LIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSL---------------------------------- 191 (722)
T ss_pred EEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHH----------------------------------
Confidence 999999998 67888888999999999999987 677777776665
Q ss_pred hhhhhcccceeEEEccCccCCCCCCcccccCCCCCEEeCCCCcCCcCCCccccCCCCCCEEeCcCccCccccCcccc---
Q 047929 639 VEYNSILNLVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMS--- 715 (790)
Q Consensus 639 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~--- 715 (790)
+.|.+..|.+. .+|+.+..| .|..||++.|+++ .+|-.|..++.|++|-|.+|.+. +.|..+.
T Consensus 192 ----------r~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kG 257 (722)
T KOG0532|consen 192 ----------RDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKG 257 (722)
T ss_pred ----------HHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHHhcc
Confidence 45777788887 677777754 5899999999998 89999999999999999999998 6776553
Q ss_pred CCCCCCEEECcCCc
Q 047929 716 SLSFLNHLNLSDNK 729 (790)
Q Consensus 716 ~l~~L~~L~l~~n~ 729 (790)
..+=-|+|++.-|+
T Consensus 258 kVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 258 KVHIFKYLSTQACQ 271 (722)
T ss_pred ceeeeeeecchhcc
Confidence 34446889998885
No 26
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.15 E-value=2.8e-12 Score=123.71 Aligned_cols=240 Identities=20% Similarity=0.204 Sum_probs=125.8
Q ss_pred CCcEEEEEcCCCCCCc----cccccCcCCCCCCEEeCCCCC---CCCCCcC-------ccccCCCCCCEEeCCCCccccc
Q 047929 46 TGHVLELNLERSELGG----KINPALVDLKHLNLLDLSGND---FQGIQIP-------EYIGSMDNLRYLNLSGAGFAGW 111 (790)
Q Consensus 46 ~~~v~~L~L~~~~~~~----~~~~~l~~l~~L~~L~Ls~~~---~~~~~l~-------~~~~~l~~L~~L~Ls~~~~~~~ 111 (790)
...+++|+|+|+.+.. .+...+.+.+.|+..++|.-- ... .+| +++-.+++|++||||.|-+...
T Consensus 29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~-Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~ 107 (382)
T KOG1909|consen 29 MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKD-EIPEALKMLSKALLGCPKLQKLDLSDNAFGPK 107 (382)
T ss_pred cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHH-HHHHHHHHHHHHHhcCCceeEeeccccccCcc
Confidence 3567888888887642 234566677788888777531 111 123 3334556788888887766544
Q ss_pred CCCC----CCCCCCCcEEECcCCccccccc-----------CccccCCCCCCcEEECCCCCCCCC--chhHHhhCCCCCC
Q 047929 112 IPHQ----LGNLSNLMHLDLSGSYYELRVE-----------DISWLAGPSLLEHLDTSDVDLIKA--SDWLLVINSLPSL 174 (790)
Q Consensus 112 lp~~----l~~l~~L~~L~ls~~~~~~~~~-----------~~~~l~~l~~L~~L~l~~~~~~~~--~~~~~~l~~l~~L 174 (790)
.+.. +.++..|++|.+.+|.+..... .-...+.-+.|+.+...+|+.... ..+...++..+.|
T Consensus 108 g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~l 187 (382)
T KOG1909|consen 108 GIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTL 187 (382)
T ss_pred chHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhcccc
Confidence 4433 2456777777777775432111 112234455566666666665554 4445555555666
Q ss_pred CEEEccCcccccc----CcccCcCCCCCCEEECCCCCCCCCCcchhccCCCCCcEEEccCCcCCCCCCccCCCCCCCcEE
Q 047929 175 KVLKLFSCKLHHF----APLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYL 250 (790)
Q Consensus 175 ~~L~l~~~~~~~~----~~~~l~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L 250 (790)
+++.+..|.|... ...++.++++|++|||..|.++... . ..+...+..+++|+.|
T Consensus 188 eevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~eg-s--------------------~~LakaL~s~~~L~El 246 (382)
T KOG1909|consen 188 EEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEG-S--------------------VALAKALSSWPHLREL 246 (382)
T ss_pred ceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHH-H--------------------HHHHHHhcccchheee
Confidence 6666555554432 1233445555555555555442200 0 0122334444555555
Q ss_pred eCCCCcCCccccccc-----cCCCCCCEEEccCcccccccC---cccccCCCCCCEEEccCCCCC
Q 047929 251 DLSYNQFNSTISDCF-----SNFDDLEYLSLGYNRLQGTIS---SIGLENLTFIKTLDLSFNELG 307 (790)
Q Consensus 251 ~l~~~~~~~~~~~~l-----~~l~~L~~L~l~~~~l~~~~~---~~~l~~l~~L~~L~l~~~~~~ 307 (790)
++++|.+......++ ...|.|++|.+.+|.++..-. ...+...+.|+.|++++|.+.
T Consensus 247 ~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 247 NLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred cccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 555555543322211 234566666666665542111 112344666777777777764
No 27
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=1.1e-11 Score=122.97 Aligned_cols=164 Identities=27% Similarity=0.270 Sum_probs=73.7
Q ss_pred CCCCCCEEeCCCCCCCCCCcCccccCCCCCCEEeCCCCcccccCC--CCCCCCCCCcEEECcCCcccccccCccccCCCC
Q 047929 69 DLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIP--HQLGNLSNLMHLDLSGSYYELRVEDISWLAGPS 146 (790)
Q Consensus 69 ~l~~L~~L~Ls~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~lp--~~l~~l~~L~~L~ls~~~~~~~~~~~~~l~~l~ 146 (790)
+++.|+.+.|.++.......-+....|++++.||||.|-+..+.| .-...|++|+.|+++.|.+......... ..++
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~-~~l~ 197 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTT-LLLS 197 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccch-hhhh
Confidence 455666666665555422111344556666666666665544322 2235566666666666654332221111 1344
Q ss_pred CCcEEECCCCCCCCCchhHHhhCCCCCCCEEEccCccccccCcccCcCCCCCCEEECCCCCCCCCCcchhccCCCCCcEE
Q 047929 147 LLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFL 226 (790)
Q Consensus 147 ~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L 226 (790)
.|+.|.++.|.++ -.++...+..+|.|+.|.+..|....+......-+..|+.|||++|.+.+...-...+.++.|+.|
T Consensus 198 ~lK~L~l~~CGls-~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~L 276 (505)
T KOG3207|consen 198 HLKQLVLNSCGLS-WKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQL 276 (505)
T ss_pred hhheEEeccCCCC-HHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhh
Confidence 4555555555544 222233444455555555555542222222333334444555555444221111223344444444
Q ss_pred EccCCcCC
Q 047929 227 DLSSNIFR 234 (790)
Q Consensus 227 ~l~~~~~~ 234 (790)
+++.+.+.
T Consensus 277 nls~tgi~ 284 (505)
T KOG3207|consen 277 NLSSTGIA 284 (505)
T ss_pred hccccCcc
Confidence 44444443
No 28
>PLN03150 hypothetical protein; Provisional
Probab=99.11 E-value=1.4e-10 Score=130.03 Aligned_cols=116 Identities=38% Similarity=0.669 Sum_probs=105.1
Q ss_pred ceeEEEccCccCCCCCCcccccCCCCCEEeCCCCcCCcCCCccccCCCCCCEEeCcCccCccccCccccCCCCCCEEECc
Q 047929 647 LVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLSFLNHLNLS 726 (790)
Q Consensus 647 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~ 726 (790)
.++.|+|++|.+.+.+|..++.+++|+.|+|++|.+.+.+|..++.+++|+.|++++|++.+.+|+.++.+++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccCCCCC--cCCccCCccccCC-cccCCCC-CCCC
Q 047929 727 DNKLVGKIPSST--QLQSFGASSITGN-DLCGAPL-SNCT 762 (790)
Q Consensus 727 ~n~l~~~~p~~~--~~~sl~~l~~~~n-~l~~~~~-~~c~ 762 (790)
+|++.+.+|... .+..+..+.+.+| .+|+.|. ..|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~ 538 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG 538 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence 999999999763 2345667889999 8999764 4675
No 29
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.04 E-value=3.6e-11 Score=116.23 Aligned_cols=260 Identities=24% Similarity=0.237 Sum_probs=122.3
Q ss_pred cccCcCCCCCCEEeCCCCCCCCC---CcCccccCCCCCCEEeCCCCc---ccccCCC-------CCCCCCCCcEEECcCC
Q 047929 64 NPALVDLKHLNLLDLSGNDFQGI---QIPEYIGSMDNLRYLNLSGAG---FAGWIPH-------QLGNLSNLMHLDLSGS 130 (790)
Q Consensus 64 ~~~l~~l~~L~~L~Ls~~~~~~~---~l~~~~~~l~~L~~L~Ls~~~---~~~~lp~-------~l~~l~~L~~L~ls~~ 130 (790)
-+.+-....++.++||+|.+... .+...+.+.++|+..++|+-- ....+|. ++-.+++|++||||.|
T Consensus 23 ~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDN 102 (382)
T KOG1909|consen 23 EEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDN 102 (382)
T ss_pred HHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccc
Confidence 35566777888888888876422 133445566677777777642 1112332 3345566666666666
Q ss_pred cccccccCccccCCCCCCcEEECCCCCCCCCchhHHhhCCCCCCCEEEccCccccccCcccCcCCCCCCEEECCCCCCCC
Q 047929 131 YYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGK 210 (790)
Q Consensus 131 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~ 210 (790)
.+.... .+.+...+.++..|++|.+.+|.+.......++. .|..|.
T Consensus 103 A~G~~g------------------------~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~--al~~l~-------- 148 (382)
T KOG1909|consen 103 AFGPKG------------------------IRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR--ALFELA-------- 148 (382)
T ss_pred ccCccc------------------------hHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH--HHHHHH--------
Confidence 432111 1333445566667777777776665443332211 000000
Q ss_pred CCcchhccCCCCCcEEEccCCcCCCC----CCccCCCCCCCcEEeCCCCcCCcc----ccccccCCCCCCEEEccCcccc
Q 047929 211 TSIPSWVFGLSDLVFLDLSSNIFRGP----IPDGFKNLTSLRYLDLSYNQFNST----ISDCFSNFDDLEYLSLGYNRLQ 282 (790)
Q Consensus 211 ~~lp~~l~~l~~L~~L~l~~~~~~~~----~p~~~~~l~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~l~ 282 (790)
....+..-++|+++....|++... +...|...+.|+.+.+..|.|... ....+..+++|++|+|.+|.++
T Consensus 149 --~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft 226 (382)
T KOG1909|consen 149 --VNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFT 226 (382)
T ss_pred --HHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhh
Confidence 000011223444444444443321 122234445555555555544321 1234455555555555555443
Q ss_pred cccC---cccccCCCCCCEEEccCCCCCCCcchhhhhhhccccCCCCEEEccCCccccc----cchhhccCCCCcEEEcc
Q 047929 283 GTIS---SIGLENLTFIKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQ----LTNQLGLFKNLHTLALS 355 (790)
Q Consensus 283 ~~~~---~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~L~ 355 (790)
.... ...+..+++|+++++++|.+.......+.-......+.|+++.+.+|.++.. +...+...+.|.+|+|+
T Consensus 227 ~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLn 306 (382)
T KOG1909|consen 227 LEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLN 306 (382)
T ss_pred hHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCC
Confidence 1110 1124445566666666665554443222111112245666666666655432 12223334556666666
Q ss_pred Cccc
Q 047929 356 DNSV 359 (790)
Q Consensus 356 ~~~i 359 (790)
+|++
T Consensus 307 gN~l 310 (382)
T KOG1909|consen 307 GNRL 310 (382)
T ss_pred cccc
Confidence 6655
No 30
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.04 E-value=1.1e-10 Score=133.34 Aligned_cols=180 Identities=25% Similarity=0.272 Sum_probs=115.1
Q ss_pred CcEEEEEcCCCC--CCccccccCcCCCCCCEEeCCCCCCCCCCcCccccCCCCCCEEeCCCCcccccCCCCCCCCCCCcE
Q 047929 47 GHVLELNLERSE--LGGKINPALVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMH 124 (790)
Q Consensus 47 ~~v~~L~L~~~~--~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~ 124 (790)
+.++.|-+.++. +....++.|..+++|++|||++|.--+ .+|+.++.|.+||+|+++++.+.. +|..+++|+.|.|
T Consensus 545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~-~LP~~I~~Li~LryL~L~~t~I~~-LP~~l~~Lk~L~~ 622 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLS-KLPSSIGELVHLRYLDLSDTGISH-LPSGLGNLKKLIY 622 (889)
T ss_pred CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccC-cCChHHhhhhhhhcccccCCCccc-cchHHHHHHhhhe
Confidence 467888887775 443334557889999999999865333 599999999999999999999986 9999999999999
Q ss_pred EECcCCcccccccCccccCCCCCCcEEECCCCCCCCCchhHHhhCCCCCCCEEEccCccccccCcccCcCCCCCC----E
Q 047929 125 LDLSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLASANFSSLN----A 200 (790)
Q Consensus 125 L~ls~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~----~ 200 (790)
|++..+...... ......+++|++|.+.......+......+.++.+|+.+....... .+ ...+..+..|+ .
T Consensus 623 Lnl~~~~~l~~~--~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~-~~-~e~l~~~~~L~~~~~~ 698 (889)
T KOG4658|consen 623 LNLEVTGRLESI--PGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV-LL-LEDLLGMTRLRSLLQS 698 (889)
T ss_pred eccccccccccc--cchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh-Hh-HhhhhhhHHHHHHhHh
Confidence 999876522222 3334458888888888777555555455566666666666644443 11 11112222222 2
Q ss_pred EECCCCCCCCCCcchhccCCCCCcEEEccCCcCC
Q 047929 201 LDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFR 234 (790)
Q Consensus 201 L~L~~~~l~~~~lp~~l~~l~~L~~L~l~~~~~~ 234 (790)
+.+.++.. ...+..+..+.+|+.|.+.+|.+.
T Consensus 699 l~~~~~~~--~~~~~~~~~l~~L~~L~i~~~~~~ 730 (889)
T KOG4658|consen 699 LSIEGCSK--RTLISSLGSLGNLEELSILDCGIS 730 (889)
T ss_pred hhhccccc--ceeecccccccCcceEEEEcCCCc
Confidence 22222221 233444555666666666666554
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=5e-11 Score=118.43 Aligned_cols=221 Identities=22% Similarity=0.171 Sum_probs=124.7
Q ss_pred CCCCCCcEEECcCCcccccccCccccCCCCCCcEEECCCCCCCCCchhHHhhCCCCCCCEEEccCccccccCcc-cCcCC
Q 047929 117 GNLSNLMHLDLSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPL-ASANF 195 (790)
Q Consensus 117 ~~l~~L~~L~ls~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~l~~l 195 (790)
.++.+|+.+.|.++.+...+.. +....+++++.||++.|-+..-..+...+..+|+|+.|+++.|.+...... .-..+
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~-~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIE-EYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hhHHhhhheeecCccccccchh-hhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 3566666666666654433332 455566666666666666666666666777888888888888876544322 22356
Q ss_pred CCCCEEECCCCCCCCCCcchhccCCCCCcEEEccCCcCCCCCCccCCCCCCCcEEeCCCCcCCccc-cccccCCCCCCEE
Q 047929 196 SSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTI-SDCFSNFDDLEYL 274 (790)
Q Consensus 196 ~~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L 274 (790)
++|+.|.+++|.++-..+-..+..+++|+.|++..|...........-+..|+.|+|++|.+.... ....+.++.|+.|
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~L 276 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQL 276 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhh
Confidence 777778888877754333333445677777777777432222233344566777777777654321 1234455666666
Q ss_pred EccCcccccccCcccccCCCCCCEEEccCCCCCCCcchhhhhhhccccCCCCEEEccCCccccc-cchhhccCCCCcEEE
Q 047929 275 SLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQ-LTNQLGLFKNLHTLA 353 (790)
Q Consensus 275 ~l~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~ 353 (790)
+++.+.+.. +.. ++.....-...+++|+.|++..|++... ....+..+++|+.|.
T Consensus 277 nls~tgi~s-i~~-----------------------~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~ 332 (505)
T KOG3207|consen 277 NLSSTGIAS-IAE-----------------------PDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLR 332 (505)
T ss_pred hccccCcch-hcC-----------------------CCccchhhhcccccceeeecccCccccccccchhhccchhhhhh
Confidence 666555441 110 0000000123455677777777766421 112344567777777
Q ss_pred ccCcccCCC
Q 047929 354 LSDNSVSGP 362 (790)
Q Consensus 354 L~~~~i~~~ 362 (790)
+..|.+...
T Consensus 333 ~~~n~ln~e 341 (505)
T KOG3207|consen 333 ITLNYLNKE 341 (505)
T ss_pred ccccccccc
Confidence 777776643
No 32
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.98 E-value=2.9e-10 Score=103.57 Aligned_cols=125 Identities=31% Similarity=0.378 Sum_probs=41.8
Q ss_pred cEEEEEcCCCCCCccccccCc-CCCCCCEEeCCCCCCCCCCcCccccCCCCCCEEeCCCCcccccCCCCC-CCCCCCcEE
Q 047929 48 HVLELNLERSELGGKINPALV-DLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQL-GNLSNLMHL 125 (790)
Q Consensus 48 ~v~~L~L~~~~~~~~~~~~l~-~l~~L~~L~Ls~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~lp~~l-~~l~~L~~L 125 (790)
++++|+|.++.|+.. +.++ .+.+|++|+|++|.+... +.+..+++|+.|++++|.++. +...+ ..+++|++|
T Consensus 20 ~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l---~~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~~L 93 (175)
T PF14580_consen 20 KLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL---EGLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQEL 93 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS--S-----TT----TT--EEE--SS---S--CHHHHHH-TT--EE
T ss_pred ccccccccccccccc--cchhhhhcCCCEEECCCCCCccc---cCccChhhhhhcccCCCCCCc-cccchHHhCCcCCEE
Confidence 567777777776532 3344 467777777777777733 346667777777777777776 43333 356777777
Q ss_pred ECcCCcccccccCccccCCCCCCcEEECCCCCCCCCch-hHHhhCCCCCCCEEEc
Q 047929 126 DLSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASD-WLLVINSLPSLKVLKL 179 (790)
Q Consensus 126 ~ls~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~l~~l~~L~~L~l 179 (790)
++++|++... .++..++.+++|+.|++.+|++..... ....+..+|+|+.|+-
T Consensus 94 ~L~~N~I~~l-~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 94 YLSNNKISDL-NELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp E-TTS---SC-CCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred ECcCCcCCCh-HHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 7777766543 234555556666666666666554422 2334455555555553
No 33
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.97 E-value=1.1e-10 Score=109.99 Aligned_cols=131 Identities=24% Similarity=0.288 Sum_probs=95.2
Q ss_pred CCCcEEEcCCCcccccCCccccCCCCCcEEEccCCcccccCCcchhccccccccCCccccceeecccccccceeeeeeee
Q 047929 554 SRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLV 633 (790)
Q Consensus 554 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 633 (790)
+.|+++|+++|.++ .+.+.+.-.|.++.|++|+|.+...- .++.
T Consensus 284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v~--nLa~--------------------------------- 327 (490)
T KOG1259|consen 284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTVQ--NLAE--------------------------------- 327 (490)
T ss_pred hhhhhccccccchh-hhhhhhhhccceeEEeccccceeeeh--hhhh---------------------------------
Confidence 46888888888887 45566777888888888888876211 1222
Q ss_pred eccchhhhhhcccceeEEEccCccCCCCCCcccccCCCCCEEeCCCCcCCcCCCccccCCCCCCEEeCcCccCcccc-Cc
Q 047929 634 MKGFMVEYNSILNLVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKI-PQ 712 (790)
Q Consensus 634 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~-p~ 712 (790)
+.+|+.|||++|.++ .+...=..+.+.++|.|++|.+... .+++.+-+|..||+++|+|.... -.
T Consensus 328 -----------L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~ 393 (490)
T KOG1259|consen 328 -----------LPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVN 393 (490)
T ss_pred -----------cccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhc
Confidence 334568888888876 3333335678888899999988633 45778889999999999887532 35
Q ss_pred cccCCCCCCEEECcCCcccccC
Q 047929 713 SMSSLSFLNHLNLSDNKLVGKI 734 (790)
Q Consensus 713 ~l~~l~~L~~L~l~~n~l~~~~ 734 (790)
.+++++.|+.+.+.+||+.+.+
T Consensus 394 ~IG~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 394 HIGNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred ccccccHHHHHhhcCCCccccc
Confidence 6788899999999999887543
No 34
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.93 E-value=1.3e-09 Score=117.28 Aligned_cols=103 Identities=35% Similarity=0.610 Sum_probs=46.8
Q ss_pred CCCcEEEccCCcccccCCcCCCCCC-CCCEEEccCCcccccCCccccCCCCCcEEECcCCcccccCchhhhhcCCCCcEE
Q 047929 481 PDLRVLNLGNNKFTGSIPISMGTLT-SLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRIL 559 (790)
Q Consensus 481 ~~L~~L~l~~n~~~~~~~~~~~~l~-~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L 559 (790)
+.++.|++.+|.++. ++....... +|+.|++++|.+..+ +..+..+++|+.|++++|++. .+|.... ..+.|+.|
T Consensus 116 ~~l~~L~l~~n~i~~-i~~~~~~~~~nL~~L~l~~N~i~~l-~~~~~~l~~L~~L~l~~N~l~-~l~~~~~-~~~~L~~L 191 (394)
T COG4886 116 TNLTSLDLDNNNITD-IPPLIGLLKSNLKELDLSDNKIESL-PSPLRNLPNLKNLDLSFNDLS-DLPKLLS-NLSNLNNL 191 (394)
T ss_pred cceeEEecCCccccc-Cccccccchhhcccccccccchhhh-hhhhhccccccccccCCchhh-hhhhhhh-hhhhhhhe
Confidence 455566666665552 332333332 555555555555532 133444555555555555554 3332221 24445555
Q ss_pred EcCCCcccccCCccccCCCCCcEEEccCC
Q 047929 560 NLRSNKLHGIFPIQICHLSSLQILDVAYN 588 (790)
Q Consensus 560 ~L~~n~~~~~~~~~~~~l~~L~~L~ls~n 588 (790)
++++|++.. +|.....+..|+++.+++|
T Consensus 192 ~ls~N~i~~-l~~~~~~~~~L~~l~~~~N 219 (394)
T COG4886 192 DLSGNKISD-LPPEIELLSALEELDLSNN 219 (394)
T ss_pred eccCCcccc-CchhhhhhhhhhhhhhcCC
Confidence 555555542 2222222333444444444
No 35
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.92 E-value=8.6e-10 Score=126.22 Aligned_cols=228 Identities=21% Similarity=0.204 Sum_probs=139.4
Q ss_pred CCcEEEEEcCCCCCCccccccCcCCCCCCEEeCCCCCCCCCCcCccccCCCCCCEEeCCCCcccccCCCCCCCCCCCcEE
Q 047929 46 TGHVLELNLERSELGGKINPALVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHL 125 (790)
Q Consensus 46 ~~~v~~L~L~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L 125 (790)
.+++|+|||++|.--+.+|..++++-|||+|+++++.+. .+|..+.++..|.+|++..+.....+|..+..|++||+|
T Consensus 570 m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~--~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L 647 (889)
T KOG4658|consen 570 LPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS--HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVL 647 (889)
T ss_pred CcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc--ccchHHHHHHhhheeccccccccccccchhhhcccccEE
Confidence 478999999998656799999999999999999999999 689999999999999999988666567767779999999
Q ss_pred ECcCCcccccccCccccCCCCCCcEEECCCCCCCCCchhHHhhCCCCCCC----EEEccCccccccCcccCcCCCCCCEE
Q 047929 126 DLSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLK----VLKLFSCKLHHFAPLASANFSSLNAL 201 (790)
Q Consensus 126 ~ls~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~----~L~l~~~~~~~~~~~~l~~l~~L~~L 201 (790)
.+...........+..+.++.+|+.+.+..... .+...+.....|+ .+.+.++ ........+..+.+|+.|
T Consensus 648 ~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~----~~~e~l~~~~~L~~~~~~l~~~~~-~~~~~~~~~~~l~~L~~L 722 (889)
T KOG4658|consen 648 RLPRSALSNDKLLLKELENLEHLENLSITISSV----LLLEDLLGMTRLRSLLQSLSIEGC-SKRTLISSLGSLGNLEEL 722 (889)
T ss_pred EeeccccccchhhHHhhhcccchhhheeecchh----HhHhhhhhhHHHHHHhHhhhhccc-ccceeecccccccCcceE
Confidence 998765444455556666677777666643333 1111223333333 2222221 112223455667777777
Q ss_pred ECCCCCCCCCCcchhccC------CCCCcEEEccCCcCCCCCCccCCCCCCCcEEeCCCCcCCccccccccCCCCCCEEE
Q 047929 202 DLSGNLFGKTSIPSWVFG------LSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLS 275 (790)
Q Consensus 202 ~L~~~~l~~~~lp~~l~~------l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 275 (790)
.+.++.+.+.. ..+... ++++..+...+|... ..+.+....++|+.|.+..+.....+......+..+..+.
T Consensus 723 ~i~~~~~~e~~-~~~~~~~~~~~~f~~l~~~~~~~~~~~-r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i 800 (889)
T KOG4658|consen 723 SILDCGISEIV-IEWEESLIVLLCFPNLSKVSILNCHML-RDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELI 800 (889)
T ss_pred EEEcCCCchhh-cccccccchhhhHHHHHHHHhhccccc-cccchhhccCcccEEEEecccccccCCCHHHHhhhcccEE
Confidence 77777653211 111110 122222222233211 1222233456777777777665544444444444444444
Q ss_pred ccCcccc
Q 047929 276 LGYNRLQ 282 (790)
Q Consensus 276 l~~~~l~ 282 (790)
+..+.+.
T Consensus 801 ~~f~~~~ 807 (889)
T KOG4658|consen 801 LPFNKLE 807 (889)
T ss_pred ecccccc
Confidence 4444433
No 36
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.89 E-value=1.5e-09 Score=98.81 Aligned_cols=106 Identities=30% Similarity=0.353 Sum_probs=25.4
Q ss_pred CCCEEECCCCCCCCCCcchhcc-CCCCCcEEEccCCcCCCCCCccCCCCCCCcEEeCCCCcCCccccccccCCCCCCEEE
Q 047929 197 SLNALDLSGNLFGKTSIPSWVF-GLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLS 275 (790)
Q Consensus 197 ~L~~L~L~~~~l~~~~lp~~l~-~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 275 (790)
+++.|+|+++.++. +. .+. .+.+|+.|++++|.+.. +. .+..+++|++|++++|.++...+.....+++|++|+
T Consensus 20 ~~~~L~L~~n~I~~--Ie-~L~~~l~~L~~L~Ls~N~I~~-l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 20 KLRELNLRGNQIST--IE-NLGATLDKLEVLDLSNNQITK-LE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELY 94 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S-CHHHHHH-TT--EEE
T ss_pred cccccccccccccc--cc-chhhhhcCCCEEECCCCCCcc-cc-CccChhhhhhcccCCCCCCccccchHHhCCcCCEEE
Confidence 44555555555422 11 232 34555555555555553 22 255555566666666655543221112355566666
Q ss_pred ccCcccccccCcccccCCCCCCEEEccCCCCC
Q 047929 276 LGYNRLQGTISSIGLENLTFIKTLDLSFNELG 307 (790)
Q Consensus 276 l~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~ 307 (790)
+++|++...-.-..+..+++|+.|++.+|++.
T Consensus 95 L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 95 LSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp -TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred CcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 66555542222222444555555555555443
No 37
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.88 E-value=4.1e-10 Score=106.18 Aligned_cols=132 Identities=23% Similarity=0.245 Sum_probs=65.4
Q ss_pred CCCCEEEccCccccccCcccCcCCCCCCEEECCCCCCCCCCcchhccCCCCCcEEEccCCcCCCCCCccCCCCCCCcEEe
Q 047929 172 PSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLD 251 (790)
Q Consensus 172 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~ 251 (790)
..|+++++++|.|+.+.. +..-.+.++.|++++|.+.. +- .+..+++|+.||+++|.+.. +..+-.++-++++|.
T Consensus 284 q~LtelDLS~N~I~~iDE-SvKL~Pkir~L~lS~N~i~~--v~-nLa~L~~L~~LDLS~N~Ls~-~~Gwh~KLGNIKtL~ 358 (490)
T KOG1259|consen 284 QELTELDLSGNLITQIDE-SVKLAPKLRRLILSQNRIRT--VQ-NLAELPQLQLLDLSGNLLAE-CVGWHLKLGNIKTLK 358 (490)
T ss_pred hhhhhccccccchhhhhh-hhhhccceeEEeccccceee--eh-hhhhcccceEeecccchhHh-hhhhHhhhcCEeeee
Confidence 345555555555554422 23334555555555555522 11 24445555555555555442 222334455555555
Q ss_pred CCCCcCCccccccccCCCCCCEEEccCcccccccCcccccCCCCCCEEEccCCCCCCCc
Q 047929 252 LSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQDI 310 (790)
Q Consensus 252 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 310 (790)
+++|.+... ..+.++-+|..|++++|++...-....++++|.|+.+.+.+|++...+
T Consensus 359 La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 359 LAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred hhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence 555555432 334455555555666555543222233556666666666666654433
No 38
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.83 E-value=4.5e-09 Score=113.04 Aligned_cols=196 Identities=36% Similarity=0.432 Sum_probs=110.1
Q ss_pred EEeCCCCCCCCCCcCccccCCCCCCEEeCCCCcccccCCCCCCCCC-CCcEEECcCCcccccccCccccCCCCCCcEEEC
Q 047929 75 LLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLS-NLMHLDLSGSYYELRVEDISWLAGPSLLEHLDT 153 (790)
Q Consensus 75 ~L~Ls~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~lp~~l~~l~-~L~~L~ls~~~~~~~~~~~~~l~~l~~L~~L~l 153 (790)
.++++.+.+.. ....+..++.++.|++.++.++. +|.....+. +|+.|++++|.+...+ ..++.++
T Consensus 97 ~l~~~~~~~~~--~~~~~~~~~~l~~L~l~~n~i~~-i~~~~~~~~~nL~~L~l~~N~i~~l~---~~~~~l~------- 163 (394)
T COG4886 97 SLDLNLNRLRS--NISELLELTNLTSLDLDNNNITD-IPPLIGLLKSNLKELDLSDNKIESLP---SPLRNLP------- 163 (394)
T ss_pred eeecccccccc--CchhhhcccceeEEecCCccccc-Cccccccchhhcccccccccchhhhh---hhhhccc-------
Confidence 57777777642 23445567889999999999887 777777774 8999999988755332 2234444
Q ss_pred CCCCCCCCchhHHhhCCCCCCCEEEccCccccccCcccCcCCCCCCEEECCCCCCCCCCcchhccCCCCCcEEEccCCcC
Q 047929 154 SDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIF 233 (790)
Q Consensus 154 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L~l~~~~~ 233 (790)
+|+.|+++.|.+.+++... ...+.|+.|++++|.+ ..+|..+..+..|++|.+++|.+
T Consensus 164 -------------------~L~~L~l~~N~l~~l~~~~-~~~~~L~~L~ls~N~i--~~l~~~~~~~~~L~~l~~~~N~~ 221 (394)
T COG4886 164 -------------------NLKNLDLSFNDLSDLPKLL-SNLSNLNNLDLSGNKI--SDLPPEIELLSALEELDLSNNSI 221 (394)
T ss_pred -------------------cccccccCCchhhhhhhhh-hhhhhhhheeccCCcc--ccCchhhhhhhhhhhhhhcCCcc
Confidence 4444444444444443321 1345555555555555 23444433444455555555543
Q ss_pred CCCCCccCCCCCCCcEEeCCCCcCCccccccccCCCCCCEEEccCcccccccCcccccCCCCCCEEEccCCCCCCCc
Q 047929 234 RGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQDI 310 (790)
Q Consensus 234 ~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 310 (790)
. ..+..+.++.++..+.+.+|++... +..++.+++++.|++++|.+. .++. +..+.+++.|+++++.+....
T Consensus 222 ~-~~~~~~~~~~~l~~l~l~~n~~~~~-~~~~~~l~~l~~L~~s~n~i~-~i~~--~~~~~~l~~L~~s~n~~~~~~ 293 (394)
T COG4886 222 I-ELLSSLSNLKNLSGLELSNNKLEDL-PESIGNLSNLETLDLSNNQIS-SISS--LGSLTNLRELDLSGNSLSNAL 293 (394)
T ss_pred e-ecchhhhhcccccccccCCceeeec-cchhccccccceecccccccc-cccc--ccccCccCEEeccCccccccc
Confidence 3 2333455555555555555554321 344555555666666666554 3333 455556666666665554433
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.76 E-value=5.2e-09 Score=78.11 Aligned_cols=61 Identities=38% Similarity=0.599 Sum_probs=46.1
Q ss_pred CCCCEEeCCCCcCCcCCCccccCCCCCCEEeCcCccCccccCccccCCCCCCEEECcCCcc
Q 047929 670 KGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLSFLNHLNLSDNKL 730 (790)
Q Consensus 670 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l 730 (790)
++|++|++++|+++...++.|.++++|++|++++|.+....|..|..+++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4567777777777766666777778888888888888777777778888888888887764
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.59 E-value=6.2e-08 Score=72.25 Aligned_cols=60 Identities=40% Similarity=0.603 Sum_probs=38.6
Q ss_pred CCCcEEEccCCcccccCCcCCCCCCCCCEEEccCCcccccCCccccCCCCCcEEECcCCc
Q 047929 481 PDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENE 540 (790)
Q Consensus 481 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~ 540 (790)
|+|++|++++|+++...+..|..+++|++|++++|++..+.+..|.++++|++|++++|+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 355666666666665555566666666666666666666666666666666666666664
No 41
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.52 E-value=1e-08 Score=110.18 Aligned_cols=197 Identities=29% Similarity=0.305 Sum_probs=112.5
Q ss_pred cCCCCCCEEeCCCCCCCCCCcCccccCCCCCCEEeCCCCcccccCCCCCCCCCCCcEEECcCCcccccccCccccCCCCC
Q 047929 68 VDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHLDLSGSYYELRVEDISWLAGPSL 147 (790)
Q Consensus 68 ~~l~~L~~L~Ls~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~ls~~~~~~~~~~~~~l~~l~~ 147 (790)
..+..++.+++..|.+.. .-..++.+.+|.+|++.+|.+.. +...+..+++|++|++++|.|. .+..+..++.
T Consensus 69 ~~l~~l~~l~l~~n~i~~--~~~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~----~i~~l~~l~~ 141 (414)
T KOG0531|consen 69 ESLTSLKELNLRQNLIAK--ILNHLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKIT----KLEGLSTLTL 141 (414)
T ss_pred HHhHhHHhhccchhhhhh--hhcccccccceeeeeccccchhh-cccchhhhhcchheeccccccc----cccchhhccc
Confidence 355666666677776663 23446677778888888887776 3333667777888888777644 2233444555
Q ss_pred CcEEECCCCCCCCCchhHHhhCCCCCCCEEEccCccccccCc-ccCcCCCCCCEEECCCCCCCCCCcchhccCCCCCcEE
Q 047929 148 LEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAP-LASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFL 226 (790)
Q Consensus 148 L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L 226 (790)
|+.|++.+|.+.... .+..++.|+.+++++|.+..+.. . ...+.+++.+.+.+|.+.. ..++..+..+..+
T Consensus 142 L~~L~l~~N~i~~~~----~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~---i~~~~~~~~l~~~ 213 (414)
T KOG0531|consen 142 LKELNLSGNLISDIS----GLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIRE---IEGLDLLKKLVLL 213 (414)
T ss_pred hhhheeccCcchhcc----CCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhc---ccchHHHHHHHHh
Confidence 666666666666554 23346666666666666666554 2 4555666666666666532 2233334444445
Q ss_pred EccCCcCCCCCCccCCCCCC--CcEEeCCCCcCCccccccccCCCCCCEEEccCcccc
Q 047929 227 DLSSNIFRGPIPDGFKNLTS--LRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQ 282 (790)
Q Consensus 227 ~l~~~~~~~~~p~~~~~l~~--L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~ 282 (790)
++..|.+...-+ +..+.. |+.+++.+|.+... +..+..+..+..|++.++.+.
T Consensus 214 ~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~~~-~~~~~~~~~l~~l~~~~n~~~ 268 (414)
T KOG0531|consen 214 SLLDNKISKLEG--LNELVMLHLRELYLSGNRISRS-PEGLENLKNLPVLDLSSNRIS 268 (414)
T ss_pred hcccccceeccC--cccchhHHHHHHhcccCccccc-cccccccccccccchhhcccc
Confidence 666665553221 222232 66666666665532 134445555666666655543
No 42
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.47 E-value=2.4e-09 Score=101.19 Aligned_cols=253 Identities=23% Similarity=0.219 Sum_probs=164.8
Q ss_pred ccCceeecCCCCcEEEEEcCCCCCCccccccCcCC--CCCCEEeCCCCCCCCCCcCccccCC-CCCCEEeCCCCccccc-
Q 047929 36 EWGGVVCNNITGHVLELNLERSELGGKINPALVDL--KHLNLLDLSGNDFQGIQIPEYIGSM-DNLRYLNLSGAGFAGW- 111 (790)
Q Consensus 36 ~~~~~~c~~~~~~v~~L~L~~~~~~~~~~~~l~~l--~~L~~L~Ls~~~~~~~~l~~~~~~l-~~L~~L~Ls~~~~~~~- 111 (790)
+|++...+ ..-=+.+|+.+-.+. |.++.++ +.+.++.+......+..+.+.+.-. +.|++||||+..++..
T Consensus 127 Rfyr~~~d--e~lW~~lDl~~r~i~---p~~l~~l~~rgV~v~Rlar~~~~~prlae~~~~frsRlq~lDLS~s~it~st 201 (419)
T KOG2120|consen 127 RFYRLASD--ESLWQTLDLTGRNIH---PDVLGRLLSRGVIVFRLARSFMDQPRLAEHFSPFRSRLQHLDLSNSVITVST 201 (419)
T ss_pred HHhhcccc--ccceeeeccCCCccC---hhHHHHHHhCCeEEEEcchhhhcCchhhhhhhhhhhhhHHhhcchhheeHHH
Confidence 56666554 334467788777654 3333333 3455566655444433344444333 3588999988887642
Q ss_pred CCCCCCCCCCCcEEECcCCcccccccCccccCCCCCCcEEECCCCCCCCCchhHHhhCCCCCCCEEEccCccccccC-cc
Q 047929 112 IPHQLGNLSNLMHLDLSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFA-PL 190 (790)
Q Consensus 112 lp~~l~~l~~L~~L~ls~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~ 190 (790)
+-.-+..|.+|+.|.+.+++ ..++....+++-.+|+.|+++.+.-....+....+.+|+.|.+|++++|...... ..
T Consensus 202 l~~iLs~C~kLk~lSlEg~~--LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv 279 (419)
T KOG2120|consen 202 LHGILSQCSKLKNLSLEGLR--LDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTV 279 (419)
T ss_pred HHHHHHHHHhhhhccccccc--cCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhH
Confidence 33345778888888888775 4455556678888899999988887777777778999999999999999865432 22
Q ss_pred cCcC-CCCCCEEECCCCCC--CCCCcchhccCCCCCcEEEccCCc-CCCCCCccCCCCCCCcEEeCCCCcCCccccc---
Q 047929 191 ASAN-FSSLNALDLSGNLF--GKTSIPSWVFGLSDLVFLDLSSNI-FRGPIPDGFKNLTSLRYLDLSYNQFNSTISD--- 263 (790)
Q Consensus 191 ~l~~-l~~L~~L~L~~~~l--~~~~lp~~l~~l~~L~~L~l~~~~-~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~--- 263 (790)
+..+ -++|+.|+++|+.- ....+..-...+++|.+|||++|. ++......|-+++.|++|.++.|.. ++|.
T Consensus 280 ~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~ 357 (419)
T KOG2120|consen 280 AVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLL 357 (419)
T ss_pred HHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcC--CChHHee
Confidence 3332 26889999999752 122233344578999999999884 4433344577889999999999864 3444
Q ss_pred cccCCCCCCEEEccCcccccccCcccccCCCCCCE
Q 047929 264 CFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKT 298 (790)
Q Consensus 264 ~l~~l~~L~~L~l~~~~l~~~~~~~~l~~l~~L~~ 298 (790)
.+...|.|.+|++.++--.+..... ...+++|+.
T Consensus 358 ~l~s~psl~yLdv~g~vsdt~mel~-~e~~~~lki 391 (419)
T KOG2120|consen 358 ELNSKPSLVYLDVFGCVSDTTMELL-KEMLSHLKI 391 (419)
T ss_pred eeccCcceEEEEeccccCchHHHHH-HHhCccccc
Confidence 4566788999998776432222221 344555554
No 43
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=2.4e-09 Score=101.12 Aligned_cols=224 Identities=22% Similarity=0.169 Sum_probs=122.9
Q ss_pred CcEEEEEcCCCCCCcc-ccccCcCC-CCCCEEeCCCCCCCCCCcCccccCCCCCCEEeCCCCcccccCCCCCCCCCCCcE
Q 047929 47 GHVLELNLERSELGGK-INPALVDL-KHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMH 124 (790)
Q Consensus 47 ~~v~~L~L~~~~~~~~-~~~~l~~l-~~L~~L~Ls~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~ 124 (790)
..|.++.+........ +.+.+.-+ ..|++||||+..++...+-..+..+.+|+.|.+.+.++.+.+...+.+-.+|+.
T Consensus 159 rgV~v~Rlar~~~~~prlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~ 238 (419)
T KOG2120|consen 159 RGVIVFRLARSFMDQPRLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVR 238 (419)
T ss_pred CCeEEEEcchhhhcCchhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhcccccee
Confidence 3455555554433322 22222222 246667777666654444444556666777777666666655556666666777
Q ss_pred EECcCCcccccccCccccCCCCCCcEEECCCCCCCCCchhHHhhCCCCCCCEEEccCccccc--c-CcccCcCCCCCCEE
Q 047929 125 LDLSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHH--F-APLASANFSSLNAL 201 (790)
Q Consensus 125 L~ls~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~--~-~~~~l~~l~~L~~L 201 (790)
|+++.+.=......--.+.+++.|..|+++-+......--...-.--++|..|+++++.-.- - .......+++|..|
T Consensus 239 lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~L 318 (419)
T KOG2120|consen 239 LNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHL 318 (419)
T ss_pred eccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeee
Confidence 77766531111111123456666667776666655542111111223567777777764211 1 11223467888888
Q ss_pred ECCCCCCCCCCcchhccCCCCCcEEEccCCcCCCCCCcc---CCCCCCCcEEeCCCCcCCccccccccCCCCCC
Q 047929 202 DLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDG---FKNLTSLRYLDLSYNQFNSTISDCFSNFDDLE 272 (790)
Q Consensus 202 ~L~~~~l~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~---~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 272 (790)
||+.+..-....-..+.+++.|++|.++.|.. .+|.. +...|.|.+|++.++--.+...-....+++|+
T Consensus 319 DLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~vsdt~mel~~e~~~~lk 390 (419)
T KOG2120|consen 319 DLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGCVSDTTMELLKEMLSHLK 390 (419)
T ss_pred ccccccccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEeccccCchHHHHHHHhCcccc
Confidence 88877532224445566788888888888853 23433 46678899999887754433222333445544
No 44
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.44 E-value=3.3e-07 Score=62.13 Aligned_cols=40 Identities=40% Similarity=0.871 Sum_probs=30.9
Q ss_pred hHHHHHHHHHHhhcCC-CCCCCCCCCCCC--CCCcccCceeec
Q 047929 4 LESERVALIKLKQDFK-DPSNHLASWIGD--VDCCEWGGVVCN 43 (790)
Q Consensus 4 ~~~~~~~~~~~~~~~~-~~~~~~~~w~~~--~~~~~~~~~~c~ 43 (790)
+.+|..||++||+++. +|.+.+.+|... .++|.|.||.|+
T Consensus 1 ~~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 1 PNQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPCSWSGVTCD 43 (43)
T ss_dssp -HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CCCSTTEEE-
T ss_pred CcHHHHHHHHHHHhcccccCcccccCCCcCCCCCeeeccEEeC
Confidence 4689999999999997 678999999654 799999999995
No 45
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.43 E-value=3.8e-08 Score=105.88 Aligned_cols=85 Identities=26% Similarity=0.276 Sum_probs=53.2
Q ss_pred eeEEEccCccCCCCCCcccccCCCCCEEeCCCCcCCcCCCccccCCCCCCEEeCcCccCccc---cCcc-ccCCCCCCEE
Q 047929 648 VRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGK---IPQS-MSSLSFLNHL 723 (790)
Q Consensus 648 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~---~p~~-l~~l~~L~~L 723 (790)
|+.+++++|.+. ..+..+..+..+..|++.+|.+... ..+...+.+..+....+.+... .... ......++..
T Consensus 234 L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (414)
T KOG0531|consen 234 LRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTL 310 (414)
T ss_pred HHHHhcccCccc-cccccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhcccccccccccccc
Confidence 566777777776 3334556677777788877777643 2345556777777777766522 1111 4456677777
Q ss_pred ECcCCcccccCC
Q 047929 724 NLSDNKLVGKIP 735 (790)
Q Consensus 724 ~l~~n~l~~~~p 735 (790)
.+.+|+.....+
T Consensus 311 ~~~~~~~~~~~~ 322 (414)
T KOG0531|consen 311 TLELNPIRKISS 322 (414)
T ss_pred ccccCccccccc
Confidence 788777765444
No 46
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.43 E-value=1.2e-07 Score=89.96 Aligned_cols=90 Identities=21% Similarity=0.178 Sum_probs=58.7
Q ss_pred CCCCCcEEECCCCCCCCCchhHHhhCCCCCCCEEEccCccccccCcccCcCCCCCCEEECCCCCCCCCCcchhccCCCCC
Q 047929 144 GPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDL 223 (790)
Q Consensus 144 ~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~L 223 (790)
..+.++.+|+.+|.++.=.++...+.++|.|++|+++.|.+...+...-....+|++|-|.+..+.=......+..++.+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 44556666666666666566667778888888888888776654332224567788888877766444444555567777
Q ss_pred cEEEccCCcC
Q 047929 224 VFLDLSSNIF 233 (790)
Q Consensus 224 ~~L~l~~~~~ 233 (790)
+.|+++.|.+
T Consensus 149 telHmS~N~~ 158 (418)
T KOG2982|consen 149 TELHMSDNSL 158 (418)
T ss_pred hhhhhccchh
Confidence 7777777643
No 47
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.32 E-value=5.8e-08 Score=91.98 Aligned_cols=211 Identities=22% Similarity=0.227 Sum_probs=116.3
Q ss_pred CCCEEECCCCCCCCCCcchhcc-CCCCCcEEEccCCcCCC--CCCccCCCCCCCcEEeCCCCcCCccccccccCCCCCCE
Q 047929 197 SLNALDLSGNLFGKTSIPSWVF-GLSDLVFLDLSSNIFRG--PIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEY 273 (790)
Q Consensus 197 ~L~~L~L~~~~l~~~~lp~~l~-~l~~L~~L~l~~~~~~~--~~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 273 (790)
.++.|.+.++.+........++ ..+.++.+||.+|.+.. .+...+.++|.|+.|+++.|.+...+...-....+|++
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~ 125 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRV 125 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEE
Confidence 3445555555553322222232 35677888888887652 33344577888888888888776543322245677888
Q ss_pred EEccCcccccccCcccccCCCCCCEEEccCCCCCCCcchhhhhhhccccCCCCEEEccCCcccccc--chhhccCCCCcE
Q 047929 274 LSLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQL--TNQLGLFKNLHT 351 (790)
Q Consensus 274 L~l~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~l~~l~~L~~ 351 (790)
|-+.+..+...-....+..+|.+++|.++.|.+.....+... .-..-+.++++....|...... -.--.-++++..
T Consensus 126 lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c--~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~s 203 (418)
T KOG2982|consen 126 LVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNC--IEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNS 203 (418)
T ss_pred EEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhcccccc--ccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchh
Confidence 888877765444444467788888888887744322111100 0001123445555444322110 001123567777
Q ss_pred EEccCcccCCC-CCcCcCCCCCCCEEECcCCcCCCcCChhhhccccccceeecCCCcce
Q 047929 352 LALSDNSVSGP-LPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVN 409 (790)
Q Consensus 352 L~L~~~~i~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~ 409 (790)
+-+..|.+... ....+..+|.+..|+++.+++..+.....+.++++|..+.+..+.+.
T Consensus 204 v~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~ 262 (418)
T KOG2982|consen 204 VFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLS 262 (418)
T ss_pred eeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence 77777765432 22345556667777777777766655555555555555555555443
No 48
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.30 E-value=8.9e-09 Score=108.81 Aligned_cols=126 Identities=29% Similarity=0.368 Sum_probs=75.8
Q ss_pred CCcEEEcCCCcccccCCccccCCCCCcEEEccCCcccccCCcchhccccccccCCccccceeecccccccceeeeeeeee
Q 047929 555 RLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVM 634 (790)
Q Consensus 555 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 634 (790)
.|.+.+.++|.+. ....++.-++.|+.|+|++|+++..- .+..
T Consensus 165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~--~Lr~---------------------------------- 207 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVD--NLRR---------------------------------- 207 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhH--HHHh----------------------------------
Confidence 4555666666665 33455566667777777777665211 1111
Q ss_pred ccchhhhhhcccceeEEEccCccCCCCCCc-ccccCCCCCEEeCCCCcCCcCCCccccCCCCCCEEeCcCccCcccc-Cc
Q 047929 635 KGFMVEYNSILNLVRSIDISMNNFSGEIPM-EVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKI-PQ 712 (790)
Q Consensus 635 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~-p~ 712 (790)
++.|++|||++|.+. .+|. ....++ |+.|.|++|.++.. .++.+|.+|+.||+++|-+.+-. -.
T Consensus 208 ----------l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~ 273 (1096)
T KOG1859|consen 208 ----------LPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELE 273 (1096)
T ss_pred ----------cccccccccccchhc-cccccchhhhh-heeeeecccHHHhh--hhHHhhhhhhccchhHhhhhcchhhh
Confidence 233456777777766 3333 223334 77888888877643 34677788888888888776421 12
Q ss_pred cccCCCCCCEEECcCCccc
Q 047929 713 SMSSLSFLNHLNLSDNKLV 731 (790)
Q Consensus 713 ~l~~l~~L~~L~l~~n~l~ 731 (790)
-+..|.+|+.|++.|||+.
T Consensus 274 pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 274 PLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred HHHHHHHHHHHhhcCCccc
Confidence 2455677777777777765
No 49
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.25 E-value=2.7e-08 Score=105.28 Aligned_cols=110 Identities=27% Similarity=0.387 Sum_probs=86.4
Q ss_pred cccceeEEEccCccCCCCCCcccccCCCCCEEeCCCCcCCcCCCc-cccCCCCCCEEeCcCccCccccCccccCCCCCCE
Q 047929 644 ILNLVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPE-TIGNMRSIESLDLSGNQISGKIPQSMSSLSFLNH 722 (790)
Q Consensus 644 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~ 722 (790)
.++.++.|+|++|++.... .+..++.|++|||+.|.+. .+|. ...+. .|+.|.+++|.++.. .++.+|.+|+.
T Consensus 185 ll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~L~lrnN~l~tL--~gie~LksL~~ 258 (1096)
T KOG1859|consen 185 LLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQLLNLRNNALTTL--RGIENLKSLYG 258 (1096)
T ss_pred HHHHhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhh-hheeeeecccHHHhh--hhHHhhhhhhc
Confidence 3555789999999998533 6788999999999999998 4443 22333 499999999999854 57899999999
Q ss_pred EECcCCcccccCC--CCCcCCccCCccccCCcccCCCCC
Q 047929 723 LNLSDNKLVGKIP--SSTQLQSFGASSITGNDLCGAPLS 759 (790)
Q Consensus 723 L~l~~n~l~~~~p--~~~~~~sl~~l~~~~n~l~~~~~~ 759 (790)
||+++|-+.+.-. ....+.+|+.|++.||++|=.|-.
T Consensus 259 LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p~h 297 (1096)
T KOG1859|consen 259 LDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAPWH 297 (1096)
T ss_pred cchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCHHH
Confidence 9999998876432 224467889999999999966654
No 50
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.24 E-value=5.2e-07 Score=84.53 Aligned_cols=252 Identities=23% Similarity=0.222 Sum_probs=109.9
Q ss_pred CCCCcEEECCCCCCCCC--chhHHhhCCCCCCCEEEccCccccc----------cCcccCcCCCCCCEEECCCCCCCCCC
Q 047929 145 PSLLEHLDTSDVDLIKA--SDWLLVINSLPSLKVLKLFSCKLHH----------FAPLASANFSSLNALDLSGNLFGKTS 212 (790)
Q Consensus 145 l~~L~~L~l~~~~~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~----------~~~~~l~~l~~L~~L~L~~~~l~~~~ 212 (790)
+..+..+++++|.+... ..+...+.+-.+|++.+++.--... +...++.+|++|+..+|+.|.+.. .
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~-~ 107 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS-E 107 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc-c
Confidence 44444455554444443 3344455666666666665432211 112344455666666666665544 2
Q ss_pred cchh----ccCCCCCcEEEccCCcCCCCCCccCCCCCCCcEEeCCCCcCCccccccccCCCCCCEEEccCcccccc---c
Q 047929 213 IPSW----VFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGT---I 285 (790)
Q Consensus 213 lp~~----l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~---~ 285 (790)
.|+. +.+-..|++|.+++|.+...-..-+++ .|.+| .+| ...+.-|.|++.....|++... .
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigk--al~~l--a~n-------KKaa~kp~Le~vicgrNRlengs~~~ 176 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGK--ALFHL--AYN-------KKAADKPKLEVVICGRNRLENGSKEL 176 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecCCCCccchhHHHH--HHHHH--HHH-------hhhccCCCceEEEeccchhccCcHHH
Confidence 2322 233445566666655443211111110 00000 000 0011224444444444443310 0
Q ss_pred CcccccCCCCCCEEEccCCCCCCCcchhhhhhhccccCCCCEEEccCCcccc----ccchhhccCCCCcEEEccCcccCC
Q 047929 286 SSIGLENLTFIKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISG----QLTNQLGLFKNLHTLALSDNSVSG 361 (790)
Q Consensus 286 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~----~~~~~l~~l~~L~~L~L~~~~i~~ 361 (790)
....+..-..|+++.+..|.|............+..+.+|+.|++.+|.++. .+...+..++.|++|.+.+|-+..
T Consensus 177 ~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~ 256 (388)
T COG5238 177 SAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSN 256 (388)
T ss_pred HHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhcc
Confidence 0111223345556666665554433333333344455566666666665542 223334445566777776665543
Q ss_pred CCCcC----c--CCCCCCCEEECcCCcCCCcCC------hhhhccccccceeecCCCcc
Q 047929 362 PLPPA----S--GELSSLTYLDLSNNNLNGMIS------EIHFGNLTELAFFYANGNSV 408 (790)
Q Consensus 362 ~~~~~----~--~~l~~L~~L~l~~n~~~~~~~------~~~~~~l~~L~~l~l~~~~~ 408 (790)
.-... | ...|+|+.|...+|.+.+... ...-..++.|..+...+|.+
T Consensus 257 ~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~ 315 (388)
T COG5238 257 EGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRI 315 (388)
T ss_pred ccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcc
Confidence 22111 1 124566666666665443221 11123445555555555543
No 51
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.17 E-value=6.2e-08 Score=96.32 Aligned_cols=85 Identities=20% Similarity=0.170 Sum_probs=41.0
Q ss_pred CcEEEEEcCCCCCCcccc--ccCcCCCCCCEEeCCCCC-CCCCCcCccccCCCCCCEEeCCCC-cccccCCC-CCCCCCC
Q 047929 47 GHVLELNLERSELGGKIN--PALVDLKHLNLLDLSGND-FQGIQIPEYIGSMDNLRYLNLSGA-GFAGWIPH-QLGNLSN 121 (790)
Q Consensus 47 ~~v~~L~L~~~~~~~~~~--~~l~~l~~L~~L~Ls~~~-~~~~~l~~~~~~l~~L~~L~Ls~~-~~~~~lp~-~l~~l~~ 121 (790)
+++++|++.|+.-.+.-+ .....++++++|++.++. +++..+-..-..+++|++|++..| .++...-+ -...+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 456666666664322222 333456666666666654 222212222234566666666663 23332222 1244566
Q ss_pred CcEEECcCCc
Q 047929 122 LMHLDLSGSY 131 (790)
Q Consensus 122 L~~L~ls~~~ 131 (790)
|++++++.|.
T Consensus 218 L~~lNlSwc~ 227 (483)
T KOG4341|consen 218 LKYLNLSWCP 227 (483)
T ss_pred HHHhhhccCc
Confidence 6666666654
No 52
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.13 E-value=1.1e-05 Score=82.99 Aligned_cols=74 Identities=12% Similarity=0.200 Sum_probs=45.4
Q ss_pred CCCCCCCEEEccCCcccccCCccccCCCCCcEEECcCCcccccCchhhhhcCCCCcEEEcCCC-cccccCCccccCCCCC
Q 047929 502 GTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSN-KLHGIFPIQICHLSSL 580 (790)
Q Consensus 502 ~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n-~~~~~~~~~~~~l~~L 580 (790)
..+.+++.|++++|.++.. | . -.++|+.|.+++|.-...+|..+ .++|++|++++| .+. .+| ++|
T Consensus 49 ~~~~~l~~L~Is~c~L~sL-P-~--LP~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~Cs~L~-sLP------~sL 114 (426)
T PRK15386 49 EEARASGRLYIKDCDIESL-P-V--LPNELTEITIENCNNLTTLPGSI---PEGLEKLTVCHCPEIS-GLP------ESV 114 (426)
T ss_pred HHhcCCCEEEeCCCCCccc-C-C--CCCCCcEEEccCCCCcccCCchh---hhhhhheEccCccccc-ccc------ccc
Confidence 3457788888888877643 3 1 22468888888765544566543 256777777777 332 222 356
Q ss_pred cEEEccCCc
Q 047929 581 QILDVAYNR 589 (790)
Q Consensus 581 ~~L~ls~n~ 589 (790)
+.|+++++.
T Consensus 115 e~L~L~~n~ 123 (426)
T PRK15386 115 RSLEIKGSA 123 (426)
T ss_pred ceEEeCCCC
Confidence 666665544
No 53
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.11 E-value=4.5e-07 Score=84.93 Aligned_cols=236 Identities=18% Similarity=0.237 Sum_probs=111.8
Q ss_pred CcEEEEEcCCCCCCcc----ccccCcCCCCCCEEeCCCCCCCC--CCc-------CccccCCCCCCEEeCCCCcccccCC
Q 047929 47 GHVLELNLERSELGGK----INPALVDLKHLNLLDLSGNDFQG--IQI-------PEYIGSMDNLRYLNLSGAGFAGWIP 113 (790)
Q Consensus 47 ~~v~~L~L~~~~~~~~----~~~~l~~l~~L~~L~Ls~~~~~~--~~l-------~~~~~~l~~L~~L~Ls~~~~~~~lp 113 (790)
..++.++|+||.+... +...+++-++|++.+++.-.... ..+ ..++-+|++|+..+||.|-+....|
T Consensus 30 d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~ 109 (388)
T COG5238 30 DELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFP 109 (388)
T ss_pred cceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccc
Confidence 4567777777766432 23444555666666665431110 011 1233455666666666665554444
Q ss_pred CC----CCCCCCCcEEECcCCcccccccCccccCCCCCCcEEECCCCCCCCC--chh---------HHhhCCCCCCCEEE
Q 047929 114 HQ----LGNLSNLMHLDLSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKA--SDW---------LLVINSLPSLKVLK 178 (790)
Q Consensus 114 ~~----l~~l~~L~~L~ls~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~--~~~---------~~~l~~l~~L~~L~ 178 (790)
.. +++-..|+||.+++|. +... ..+ .+...+-|.|++..
T Consensus 110 e~L~d~is~~t~l~HL~l~NnG--------------------------lGp~aG~rigkal~~la~nKKaa~kp~Le~vi 163 (388)
T COG5238 110 EELGDLISSSTDLVHLKLNNNG--------------------------LGPIAGGRIGKALFHLAYNKKAADKPKLEVVI 163 (388)
T ss_pred hHHHHHHhcCCCceeEEeecCC--------------------------CCccchhHHHHHHHHHHHHhhhccCCCceEEE
Confidence 32 3444556666666554 3222 111 11223345555555
Q ss_pred ccCccccccCc----ccCcCCCCCCEEECCCCCCCCCCcch----hccCCCCCcEEEccCCcCCCC----CCccCCCCCC
Q 047929 179 LFSCKLHHFAP----LASANFSSLNALDLSGNLFGKTSIPS----WVFGLSDLVFLDLSSNIFRGP----IPDGFKNLTS 246 (790)
Q Consensus 179 l~~~~~~~~~~----~~l~~l~~L~~L~L~~~~l~~~~lp~----~l~~l~~L~~L~l~~~~~~~~----~p~~~~~l~~ 246 (790)
...|++...+. ..+.....|+++.+.+|.|....+.. .++.+.+|+.||+.+|.++-. +..++...+.
T Consensus 164 cgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~ 243 (388)
T COG5238 164 CGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNL 243 (388)
T ss_pred eccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccch
Confidence 55554433322 12222345555555555543211111 122355566666666654421 2223334455
Q ss_pred CcEEeCCCCcCCcccccc----c--cCCCCCCEEEccCccccccc------CcccccCCCCCCEEEccCCCCCC
Q 047929 247 LRYLDLSYNQFNSTISDC----F--SNFDDLEYLSLGYNRLQGTI------SSIGLENLTFIKTLDLSFNELGQ 308 (790)
Q Consensus 247 L~~L~l~~~~~~~~~~~~----l--~~l~~L~~L~l~~~~l~~~~------~~~~l~~l~~L~~L~l~~~~~~~ 308 (790)
|+.|.+..|-++...... | ...|+|+.|...+|.+.+.+ +...-.++|-|..|.+.+|.+..
T Consensus 244 lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E 317 (388)
T COG5238 244 LRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKE 317 (388)
T ss_pred hhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchh
Confidence 666666666554332221 1 13466666666666544322 11112445667777777777754
No 54
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.92 E-value=4.4e-07 Score=90.47 Aligned_cols=66 Identities=24% Similarity=0.208 Sum_probs=25.6
Q ss_pred CCCCCCcEEECcCCcccccccCccccCCCCCCcEEECCCCCCCCCchhHHhhCCCCCCCEEEccCc
Q 047929 117 GNLSNLMHLDLSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSC 182 (790)
Q Consensus 117 ~~l~~L~~L~ls~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 182 (790)
.+++++++|++.++.......-...-..+++|++|++..+.......+.....+|++|++|++++|
T Consensus 161 ~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc 226 (483)
T KOG4341|consen 161 SNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWC 226 (483)
T ss_pred hhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccC
Confidence 445555555555543111111111222344444444444333333222223334444444444444
No 55
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.82 E-value=8.5e-05 Score=76.60 Aligned_cols=91 Identities=14% Similarity=0.222 Sum_probs=59.7
Q ss_pred CCCCCcEEEccCCcccccCCcCCCCCCCCCEEEccCCcccccCCccccCCCCCcEEECcCCcccccCchhhhhcCCCCcE
Q 047929 479 NWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRI 558 (790)
Q Consensus 479 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~ 558 (790)
.+..++.|++++|.++ .+| .+ .++|+.|.+++|.-....|..+ .++|+.|++++|.....+| ++|+.
T Consensus 50 ~~~~l~~L~Is~c~L~-sLP-~L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP-------~sLe~ 116 (426)
T PRK15386 50 EARASGRLYIKDCDIE-SLP-VL--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP-------ESVRS 116 (426)
T ss_pred HhcCCCEEEeCCCCCc-ccC-CC--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc-------cccce
Confidence 4578899999999877 455 22 3579999998876544555544 3689999999884332343 45788
Q ss_pred EEcCCCcccccCCccccCC-CCCcEEEccC
Q 047929 559 LNLRSNKLHGIFPIQICHL-SSLQILDVAY 587 (790)
Q Consensus 559 L~L~~n~~~~~~~~~~~~l-~~L~~L~ls~ 587 (790)
|+++++.... +..+ ++|+.|.+.+
T Consensus 117 L~L~~n~~~~-----L~~LPssLk~L~I~~ 141 (426)
T PRK15386 117 LEIKGSATDS-----IKNVPNGLTSLSINS 141 (426)
T ss_pred EEeCCCCCcc-----cccCcchHhheeccc
Confidence 8887665432 1222 3677777644
No 56
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.80 E-value=1e-05 Score=90.80 Aligned_cols=112 Identities=21% Similarity=0.224 Sum_probs=53.2
Q ss_pred CCCCcEEECCCCCCCCCchhHHhhCCCCCCCEEEccCccccccCcccCcCCCCCCEEECCCCCCCCCCcchhccCCCCCc
Q 047929 145 PSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLV 224 (790)
Q Consensus 145 l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~L~ 224 (790)
+|+|+.|.+.+.....++ ......++|+|..|++++++++.+ ..++++++|++|.+.+-.+.....-..++.+++|+
T Consensus 147 LPsL~sL~i~~~~~~~~d-F~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~ 223 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDD-FSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLR 223 (699)
T ss_pred CcccceEEecCceecchh-HHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCC
Confidence 344444444444333332 233455566666666666655555 44555566666665555443222222345566666
Q ss_pred EEEccCCcCCCCC--C----ccCCCCCCCcEEeCCCCcCCc
Q 047929 225 FLDLSSNIFRGPI--P----DGFKNLTSLRYLDLSYNQFNS 259 (790)
Q Consensus 225 ~L~l~~~~~~~~~--p----~~~~~l~~L~~L~l~~~~~~~ 259 (790)
.||+|........ . +.-..+|+||.||.+++.+..
T Consensus 224 vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 224 VLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred eeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence 6666554332110 0 011224555555555555443
No 57
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.78 E-value=8.9e-07 Score=74.16 Aligned_cols=103 Identities=23% Similarity=0.301 Sum_probs=51.7
Q ss_pred EEEccCccCCCCCCc---ccccCCCCCEEeCCCCcCCcCCCccccC-CCCCCEEeCcCccCccccCccccCCCCCCEEEC
Q 047929 650 SIDISMNNFSGEIPM---EVTNLKGLQSLNLSHNSFIGKIPETIGN-MRSIESLDLSGNQISGKIPQSMSSLSFLNHLNL 725 (790)
Q Consensus 650 ~L~L~~n~l~~~~~~---~~~~l~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l 725 (790)
.+||++|.+. .++. .+.....|+..+|++|.+. ..|+.|.. ++..+.|++++|.+. .+|..++.++.|+.|++
T Consensus 31 ~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl 107 (177)
T KOG4579|consen 31 FLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNL 107 (177)
T ss_pred hcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhccc
Confidence 4555555554 2222 2233444555566666555 33333322 345566666666665 34455666666666666
Q ss_pred cCCcccccCCCCCcCCccCCccccCCcccC
Q 047929 726 SDNKLVGKIPSSTQLQSFGASSITGNDLCG 755 (790)
Q Consensus 726 ~~n~l~~~~p~~~~~~sl~~l~~~~n~l~~ 755 (790)
+.|++...+-...++.+|..|+..+|..-.
T Consensus 108 ~~N~l~~~p~vi~~L~~l~~Lds~~na~~e 137 (177)
T KOG4579|consen 108 RFNPLNAEPRVIAPLIKLDMLDSPENARAE 137 (177)
T ss_pred ccCccccchHHHHHHHhHHHhcCCCCcccc
Confidence 666655444444445555555555554433
No 58
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.77 E-value=9.4e-06 Score=91.10 Aligned_cols=112 Identities=25% Similarity=0.315 Sum_probs=72.2
Q ss_pred CcEEEEEcCCCCC-CccccccC-cCCCCCCEEeCCCCCCCCCCcCccccCCCCCCEEeCCCCcccccCCCCCCCCCCCcE
Q 047929 47 GHVLELNLERSEL-GGKINPAL-VDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMH 124 (790)
Q Consensus 47 ~~v~~L~L~~~~~-~~~~~~~l-~~l~~L~~L~Ls~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~ 124 (790)
..+++|+++|... ...+|..+ ..||+|+.|.+++-.+....+.....++++|++||+|+++++. + ..+++|++||+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~n-l-~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISN-L-SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccC-c-HHHhccccHHH
Confidence 4678888887643 33344444 3578888888887766544444555678888888888888876 3 66788888888
Q ss_pred EECcCCcccccccCccccCCCCCCcEEECCCCCCCCC
Q 047929 125 LDLSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKA 161 (790)
Q Consensus 125 L~ls~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 161 (790)
|.+.+=.+. ...++..+-++++|+.||++.......
T Consensus 200 L~mrnLe~e-~~~~l~~LF~L~~L~vLDIS~~~~~~~ 235 (699)
T KOG3665|consen 200 LSMRNLEFE-SYQDLIDLFNLKKLRVLDISRDKNNDD 235 (699)
T ss_pred HhccCCCCC-chhhHHHHhcccCCCeeeccccccccc
Confidence 877654332 223444555666666666665544443
No 59
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.61 E-value=8.2e-05 Score=67.24 Aligned_cols=125 Identities=22% Similarity=0.275 Sum_probs=80.4
Q ss_pred EEEEEcCCCCCCccccccCcCC----CCCCEEeCCCCCCCCCCcCccccCCCCCCEEeCCCCcccccCCCCCCCCCCCcE
Q 047929 49 VLELNLERSELGGKINPALVDL----KHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMH 124 (790)
Q Consensus 49 v~~L~L~~~~~~~~~~~~l~~l----~~L~~L~Ls~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~ 124 (790)
-++++|.+..+. .+.++ .....+||++|.+... +.|..++.|..|.+.+|+|+.+-|.--..+++|.+
T Consensus 21 e~e~~LR~lkip-----~ienlg~~~d~~d~iDLtdNdl~~l---~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~ 92 (233)
T KOG1644|consen 21 ERELDLRGLKIP-----VIENLGATLDQFDAIDLTDNDLRKL---DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKT 92 (233)
T ss_pred cccccccccccc-----chhhccccccccceecccccchhhc---ccCCCccccceEEecCCcceeeccchhhhccccce
Confidence 455666665542 12222 3445688999888733 45778889999999999999866655567788999
Q ss_pred EECcCCcccccccCccccCCCCCCcEEECCCCCCCCCchhHHhhCCCCCCCEEEccCccccccC---cccCcCCCCCCEE
Q 047929 125 LDLSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFA---PLASANFSSLNAL 201 (790)
Q Consensus 125 L~ls~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~---~~~l~~l~~L~~L 201 (790)
|.+.+|.+.... ++. -+..||+|+.|.+-+|.+.... ...+..+++|++|
T Consensus 93 L~LtnNsi~~l~-dl~--------------------------pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~L 145 (233)
T KOG1644|consen 93 LILTNNSIQELG-DLD--------------------------PLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTL 145 (233)
T ss_pred EEecCcchhhhh-hcc--------------------------hhccCCccceeeecCCchhcccCceeEEEEecCcceEe
Confidence 999888754322 222 3455666666666666554432 2345567777777
Q ss_pred ECCCCCC
Q 047929 202 DLSGNLF 208 (790)
Q Consensus 202 ~L~~~~l 208 (790)
|..+...
T Consensus 146 DF~kVt~ 152 (233)
T KOG1644|consen 146 DFQKVTR 152 (233)
T ss_pred ehhhhhH
Confidence 7776543
No 60
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.61 E-value=4e-05 Score=51.96 Aligned_cols=36 Identities=39% Similarity=0.694 Sum_probs=15.8
Q ss_pred CCCEEeCCCCcCCcCCCccccCCCCCCEEeCcCccCc
Q 047929 671 GLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQIS 707 (790)
Q Consensus 671 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~ 707 (790)
+|++|++++|+++ .+|..++++++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 3444555555444 23333444445555555544444
No 61
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.61 E-value=4.2e-05 Score=51.84 Aligned_cols=37 Identities=46% Similarity=0.733 Sum_probs=22.6
Q ss_pred CCCCEEeCcCccCccccCccccCCCCCCEEECcCCccc
Q 047929 694 RSIESLDLSGNQISGKIPQSMSSLSFLNHLNLSDNKLV 731 (790)
Q Consensus 694 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~ 731 (790)
++|++|++++|+++ .+|..++.|++|+.|++++|+++
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 35667777777766 34445666777777777777665
No 62
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.60 E-value=3.9e-05 Score=72.57 Aligned_cols=127 Identities=25% Similarity=0.269 Sum_probs=80.8
Q ss_pred cEEEEEcCCC-CCCccccccCcCCCCCCEEeCCCCCCCCCCcCccccCCCCCCEEeCCCC--cccccCCCCCCCCCCCcE
Q 047929 48 HVLELNLERS-ELGGKINPALVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGA--GFAGWIPHQLGNLSNLMH 124 (790)
Q Consensus 48 ~v~~L~L~~~-~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~l~~~~~~l~~L~~L~Ls~~--~~~~~lp~~l~~l~~L~~ 124 (790)
.++.+.+..+ ...+.+..-.-.+..|+.|++.+..++.. ..+..|++|+.|.+|.| .+.+.++-...++++|++
T Consensus 19 ~v~~l~lD~~~s~~g~~~gl~d~~~~le~ls~~n~gltt~---~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~ 95 (260)
T KOG2739|consen 19 QVDELFLDNARSGAGKLGGLTDEFVELELLSVINVGLTTL---TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKV 95 (260)
T ss_pred hhhhhhcchhhhcCCCcccccccccchhhhhhhccceeec---ccCCCcchhhhhcccCCcccccccceehhhhCCceeE
Confidence 4455555544 22334555555667777777777666532 34557889999999999 666667777778899999
Q ss_pred EECcCCcccccccCccccCCCCCCcEEECCCCCCCCCch-hHHhhCCCCCCCEEE
Q 047929 125 LDLSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASD-WLLVINSLPSLKVLK 178 (790)
Q Consensus 125 L~ls~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~l~~l~~L~~L~ 178 (790)
|++++|++.. ...+..++.+.+|..|++.++....... --..+.-+++|+.|+
T Consensus 96 l~ls~Nki~~-lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD 149 (260)
T KOG2739|consen 96 LNLSGNKIKD-LSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLD 149 (260)
T ss_pred EeecCCcccc-ccccchhhhhcchhhhhcccCCccccccHHHHHHHHhhhhcccc
Confidence 9999998765 4555566666667777777666555421 122334444444444
No 63
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.60 E-value=0.00012 Score=66.23 Aligned_cols=85 Identities=22% Similarity=0.180 Sum_probs=49.9
Q ss_pred CCCcEEEccCCcCCCCCCccCCCCCCCcEEeCCCCcCCccccccccCCCCCCEEEccCcccccccCcccccCCCCCCEEE
Q 047929 221 SDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLD 300 (790)
Q Consensus 221 ~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~l~~L~~L~ 300 (790)
.+...+||++|.+.. ++ .|..++.|.+|.+.+|.|+.+.|.--..+++|+.|.+.+|.+........+..+|+|+.|.
T Consensus 42 d~~d~iDLtdNdl~~-l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRK-LD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred cccceecccccchhh-cc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 345566666666552 22 3666667777777777776665554455566777777776665322222355566666666
Q ss_pred ccCCCCC
Q 047929 301 LSFNELG 307 (790)
Q Consensus 301 l~~~~~~ 307 (790)
+-+|.+.
T Consensus 120 ll~Npv~ 126 (233)
T KOG1644|consen 120 LLGNPVE 126 (233)
T ss_pred ecCCchh
Confidence 6666554
No 64
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.53 E-value=1e-05 Score=67.96 Aligned_cols=116 Identities=28% Similarity=0.394 Sum_probs=85.9
Q ss_pred ceeEEEccCccCCCCCCccc-ccCCCCCEEeCCCCcCCcCCCccccCCCCCCEEeCcCccCccccCccccCCCCCCEEEC
Q 047929 647 LVRSIDISMNNFSGEIPMEV-TNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLSFLNHLNL 725 (790)
Q Consensus 647 ~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l 725 (790)
.|+..+|++|.+. ..|+.| ...+.+++|++++|.+. .+|+.+..+++|+.|+++.|.+. ..|..+..|.++-.|+.
T Consensus 54 el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds 130 (177)
T KOG4579|consen 54 ELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDS 130 (177)
T ss_pred eEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcC
Confidence 3677899999998 456555 45679999999999998 67888999999999999999999 67888888999999999
Q ss_pred cCCcccccCCCCCcCCccCCccccCCcccCCCCCCCCcccccccc
Q 047929 726 SDNKLVGKIPSSTQLQSFGASSITGNDLCGAPLSNCTEKNVLALC 770 (790)
Q Consensus 726 ~~n~l~~~~p~~~~~~sl~~l~~~~n~l~~~~~~~c~~~~~~~~~ 770 (790)
.+|.+. .+|......++..+.-.|| -|+..-+.++.+++.
T Consensus 131 ~~na~~-eid~dl~~s~~~al~~lgn----epl~~~~~~klqa~k 170 (177)
T KOG4579|consen 131 PENARA-EIDVDLFYSSLPALIKLGN----EPLGDETKKKLQALK 170 (177)
T ss_pred CCCccc-cCcHHHhccccHHHHHhcC----CcccccCcccccccC
Confidence 999876 5665533344444433343 233333444555555
No 65
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.06 E-value=0.0027 Score=55.88 Aligned_cols=120 Identities=19% Similarity=0.285 Sum_probs=50.3
Q ss_pred cCCCCCCcEEEccCCcccccCCcCCCCCCCCCEEEccCCcccccCCccccCCCCCcEEECcCCcccccCchhhhhcCCCC
Q 047929 477 WMNWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRL 556 (790)
Q Consensus 477 ~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L 556 (790)
|..+++|+.+.+.. .+.......|..+++|+.+.+.++ +..+....|.++++++.+.+.+ .+. .++...+..+++|
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~-~i~~~~F~~~~~l 83 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLK-SIGDNAFSNCTNL 83 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT--EE-TTTTTT-TTE
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccc-ccccccccccccc
Confidence 44455566666553 344344455666666666666653 5555555666666666666654 222 3334444456666
Q ss_pred cEEEcCCCcccccCCccccCCCCCcEEEccCCcccccCCcchhcccc
Q 047929 557 RILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCINNFTA 603 (790)
Q Consensus 557 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~ 603 (790)
+.+++..+ +.......|.++ .|+.+.+.. .+.......|.++++
T Consensus 84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~ 127 (129)
T PF13306_consen 84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTK 127 (129)
T ss_dssp CEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG----
T ss_pred cccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCcccccccc
Confidence 66666554 443444555565 667666654 333233334444443
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.92 E-value=2.9e-05 Score=73.43 Aligned_cols=103 Identities=22% Similarity=0.240 Sum_probs=73.2
Q ss_pred CCCCCEEeCCCCCCCCCCcCccccCCCCCCEEeCCCCcccccCCCCCCCCCCCcEEECcCCcccccccCccccCCCCCCc
Q 047929 70 LKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHLDLSGSYYELRVEDISWLAGPSLLE 149 (790)
Q Consensus 70 l~~L~~L~Ls~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~ls~~~~~~~~~~~~~l~~l~~L~ 149 (790)
+.+++.|++-++.+.+++ ...+++.|++|.||-|+|+. -..+..|++|+.|.|+.|.|. ..+++.++.++++|+
T Consensus 18 l~~vkKLNcwg~~L~DIs---ic~kMp~lEVLsLSvNkIss--L~pl~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr 91 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDIS---ICEKMPLLEVLSLSVNKISS--LAPLQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLR 91 (388)
T ss_pred HHHhhhhcccCCCccHHH---HHHhcccceeEEeecccccc--chhHHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhh
Confidence 556777888888888663 24478888888888888876 334778888888888888654 344567778888888
Q ss_pred EEECCCCCCCCC---chhHHhhCCCCCCCEEE
Q 047929 150 HLDTSDVDLIKA---SDWLLVINSLPSLKVLK 178 (790)
Q Consensus 150 ~L~l~~~~~~~~---~~~~~~l~~l~~L~~L~ 178 (790)
.|.+..|..... .--...+..+|+|+.|+
T Consensus 92 ~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 92 TLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 888887776654 22234566667776665
No 67
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.85 E-value=0.0032 Score=55.36 Aligned_cols=99 Identities=23% Similarity=0.313 Sum_probs=41.9
Q ss_pred cCCCCCCcEEEccCCcccccCCcCCCCCCCCCEEEccCCcccccCCccccCCCCCcEEECcCCcccccCchhhhhcCCCC
Q 047929 477 WMNWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRL 556 (790)
Q Consensus 477 ~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L 556 (790)
|..+++|+.+.+.++ +.......|..+++++.+.+.+ .+.......|..+++|+.+++..+ +. .++...+..+ .|
T Consensus 31 F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~-~i~~~~f~~~-~l 105 (129)
T PF13306_consen 31 FSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-IT-EIGSSSFSNC-NL 105 (129)
T ss_dssp TTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--B-EEHTTTTTT--T-
T ss_pred ccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccCcc-cc-EEchhhhcCC-Cc
Confidence 455556666666654 4434444566666667776654 444444556666677777776554 32 3444444444 66
Q ss_pred cEEEcCCCcccccCCccccCCCCCc
Q 047929 557 RILNLRSNKLHGIFPIQICHLSSLQ 581 (790)
Q Consensus 557 ~~L~L~~n~~~~~~~~~~~~l~~L~ 581 (790)
+.+.+.. .+..+....|.++++|+
T Consensus 106 ~~i~~~~-~~~~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 106 KEINIPS-NITKIEENAFKNCTKLK 129 (129)
T ss_dssp -EEE-TT-B-SS----GGG------
T ss_pred eEEEECC-CccEECCccccccccCC
Confidence 6666654 33334445566665553
No 68
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.85 E-value=0.00062 Score=64.59 Aligned_cols=86 Identities=23% Similarity=0.291 Sum_probs=38.2
Q ss_pred CCCCcEEEccCCcccccCCcCCCCCCCCCEEEccCC--cccccCCccccCCCCCcEEECcCCcccccCchhhhhcCCCCc
Q 047929 480 WPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSN--RLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLR 557 (790)
Q Consensus 480 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n--~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~ 557 (790)
+..|+.+++.++.++.. ..|..+++|++|.++.| .+.+........+|+|+++++++|++...-...-...+.+|.
T Consensus 42 ~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~ 119 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLK 119 (260)
T ss_pred ccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchh
Confidence 34444455555444411 12344555555555555 344333333444455555555555543200000112344555
Q ss_pred EEEcCCCccc
Q 047929 558 ILNLRSNKLH 567 (790)
Q Consensus 558 ~L~L~~n~~~ 567 (790)
.|++.+|..+
T Consensus 120 ~Ldl~n~~~~ 129 (260)
T KOG2739|consen 120 SLDLFNCSVT 129 (260)
T ss_pred hhhcccCCcc
Confidence 5555555443
No 69
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.55 E-value=8.3e-05 Score=70.43 Aligned_cols=101 Identities=25% Similarity=0.289 Sum_probs=68.9
Q ss_pred CCCCCEEEccCCccCCCcccccccccccccCCCccCCCCCCcEEEccCCcccccCCcCCCCCCCCCEEEccCCcccccCC
Q 047929 443 QKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIP 522 (790)
Q Consensus 443 ~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~ 522 (790)
+.+.++|+..+|.+.++ .....++.|+.|.|+-|+|+..- .+..|++|++|+|+.|.|..+.-
T Consensus 18 l~~vkKLNcwg~~L~DI---------------sic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldE 80 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI---------------SICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDE 80 (388)
T ss_pred HHHhhhhcccCCCccHH---------------HHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHH
Confidence 34566777777777665 22346678888888888887433 36678888888888888765432
Q ss_pred -ccccCCCCCcEEECcCCcccccCchh----hhhcCCCCcEEE
Q 047929 523 -VPFENCSQLVALDMGENEFVGNIPTW----MGERFSRLRILN 560 (790)
Q Consensus 523 -~~l~~l~~L~~L~l~~n~~~~~~~~~----~~~~~~~L~~L~ 560 (790)
..+.++|+|+.|.|.+|+-.+..+.. ....+|+|+.||
T Consensus 81 L~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 81 LEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HHHHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 45677888888888888766655532 234577888776
No 70
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.54 E-value=0.00017 Score=80.29 Aligned_cols=192 Identities=23% Similarity=0.156 Sum_probs=111.8
Q ss_pred cCCCCCCEEeCCCCC-CCCCCcCccccCCCCCCEEeCCCC-cccccC----CCCCCCCCCCcEEECcCCcccccccCccc
Q 047929 68 VDLKHLNLLDLSGND-FQGIQIPEYIGSMDNLRYLNLSGA-GFAGWI----PHQLGNLSNLMHLDLSGSYYELRVEDISW 141 (790)
Q Consensus 68 ~~l~~L~~L~Ls~~~-~~~~~l~~~~~~l~~L~~L~Ls~~-~~~~~l----p~~l~~l~~L~~L~ls~~~~~~~~~~~~~ 141 (790)
..++.|+.|.+.++. +....+-.....+++|+.|+++++ ...... ......+++|++|+++++.. .....+..
T Consensus 185 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~-isd~~l~~ 263 (482)
T KOG1947|consen 185 SSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGL-VTDIGLSA 263 (482)
T ss_pred hhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhc-cCchhHHH
Confidence 347888888888774 433223455667889999999873 221111 22345678889999988752 23333344
Q ss_pred cC-CCCCCcEEECCCCCCCCCchhHHhhCCCCCCCEEEccCcccc-cc-CcccCcCCCCCCEEECCCCCCCCCCcchhcc
Q 047929 142 LA-GPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLH-HF-APLASANFSSLNALDLSGNLFGKTSIPSWVF 218 (790)
Q Consensus 142 l~-~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~-~~~~l~~l~~L~~L~L~~~~l~~~~lp~~l~ 218 (790)
++ .+++|++|.+.++....+.++......++.|++|++++|... +. ......++++|+.|.+.....
T Consensus 264 l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~---------- 333 (482)
T KOG1947|consen 264 LASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNG---------- 333 (482)
T ss_pred HHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCC----------
Confidence 44 378899999777776666777778888999999999988653 11 112233466666655443321
Q ss_pred CCCCCcEEEccCCcCC---CCCCccCCCCCCCcEEeCCCCcCCccc-cccccCCCCC
Q 047929 219 GLSDLVFLDLSSNIFR---GPIPDGFKNLTSLRYLDLSYNQFNSTI-SDCFSNFDDL 271 (790)
Q Consensus 219 ~l~~L~~L~l~~~~~~---~~~p~~~~~l~~L~~L~l~~~~~~~~~-~~~l~~l~~L 271 (790)
+..++.+.+..+... .........+++++.+.+.++...... ...+.+++.|
T Consensus 334 -c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l 389 (482)
T KOG1947|consen 334 -CPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNL 389 (482)
T ss_pred -CccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCccc
Confidence 333444444333211 112223456677777777766633222 2334445554
No 71
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.52 E-value=0.00028 Score=78.46 Aligned_cols=177 Identities=25% Similarity=0.142 Sum_probs=85.7
Q ss_pred CCCCcEEECcCCcccccccCccccCCCCCCcEEECCCC-CCCCC--chhHHhhCCCCCCCEEEccCcc-ccccCcccCcC
Q 047929 119 LSNLMHLDLSGSYYELRVEDISWLAGPSLLEHLDTSDV-DLIKA--SDWLLVINSLPSLKVLKLFSCK-LHHFAPLASAN 194 (790)
Q Consensus 119 l~~L~~L~ls~~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~--~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~l~~ 194 (790)
+++|+.|.+.++.-............++.|+.|+++++ ..... .........+++|+.|+++++. +++..-..+..
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 45555555555432111112233445566666666542 11111 1122244556777777777766 55544444433
Q ss_pred -CCCCCEEECCCCC-CCCCCcchhccCCCCCcEEEccCCcCCCC--CCccCCCCCCCcEEeCCCCcCCccccccccCCCC
Q 047929 195 -FSSLNALDLSGNL-FGKTSIPSWVFGLSDLVFLDLSSNIFRGP--IPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDD 270 (790)
Q Consensus 195 -l~~L~~L~L~~~~-l~~~~lp~~l~~l~~L~~L~l~~~~~~~~--~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~ 270 (790)
+++|++|.+.++. +++..+-.....++.|++|++++|...+. +.....++++|+.|.+..... ++.
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~----------c~~ 336 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNG----------CPS 336 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCC----------Ccc
Confidence 6677777766665 45544555455677777777777754311 112233455555544332221 223
Q ss_pred CCEEEccCccccc--ccCcccccCCCCCCEEEccCCC
Q 047929 271 LEYLSLGYNRLQG--TISSIGLENLTFIKTLDLSFNE 305 (790)
Q Consensus 271 L~~L~l~~~~l~~--~~~~~~l~~l~~L~~L~l~~~~ 305 (790)
++.+.+....... .........+++++.+.+..+.
T Consensus 337 l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~ 373 (482)
T KOG1947|consen 337 LTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG 373 (482)
T ss_pred HHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhh
Confidence 3333333221110 1222235566666666666655
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.71 E-value=0.012 Score=32.88 Aligned_cols=12 Identities=58% Similarity=0.966 Sum_probs=5.7
Q ss_pred CCEEeCcCccCc
Q 047929 696 IESLDLSGNQIS 707 (790)
Q Consensus 696 L~~L~l~~n~l~ 707 (790)
|++||+++|+++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 444444444444
No 73
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.51 E-value=0.016 Score=32.47 Aligned_cols=21 Identities=48% Similarity=0.828 Sum_probs=13.2
Q ss_pred CCCEEeCCCCcccccCCCCCCC
Q 047929 97 NLRYLNLSGAGFAGWIPHQLGN 118 (790)
Q Consensus 97 ~L~~L~Ls~~~~~~~lp~~l~~ 118 (790)
+|++||+++|+++ .+|.+|++
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT
T ss_pred CccEEECCCCcCE-eCChhhcC
Confidence 4667777777766 36655554
No 74
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=91.42 E-value=0.0053 Score=57.01 Aligned_cols=83 Identities=16% Similarity=0.127 Sum_probs=68.0
Q ss_pred CCcEEEEEcCCCCCCccccccCcCCCCCCEEeCCCCCCCCCCcCccccCCCCCCEEeCCCCcccccCCCCCCCCCCCcEE
Q 047929 46 TGHVLELNLERSELGGKINPALVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHL 125 (790)
Q Consensus 46 ~~~v~~L~L~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L 125 (790)
..+++.||++.+.+. .+..-+..++.+..|+++.|.+. .+|+.++....++++++..|+.+. .|.++++.++++++
T Consensus 41 ~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~--~~~~d~~q~~e~~~~~~~~n~~~~-~p~s~~k~~~~k~~ 116 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK--FLPKDAKQQRETVNAASHKNNHSQ-QPKSQKKEPHPKKN 116 (326)
T ss_pred cceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh--hChhhHHHHHHHHHHHhhccchhh-CCccccccCCcchh
Confidence 568899999988754 34456677788888999988887 578888888899999988887775 89999999999999
Q ss_pred ECcCCcc
Q 047929 126 DLSGSYY 132 (790)
Q Consensus 126 ~ls~~~~ 132 (790)
++.++.+
T Consensus 117 e~k~~~~ 123 (326)
T KOG0473|consen 117 EQKKTEF 123 (326)
T ss_pred hhccCcc
Confidence 9988764
No 75
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=90.92 E-value=0.13 Score=26.59 Aligned_cols=10 Identities=50% Similarity=0.843 Sum_probs=3.2
Q ss_pred CCEEeCcCcc
Q 047929 696 IESLDLSGNQ 705 (790)
Q Consensus 696 L~~L~l~~n~ 705 (790)
|+.|++++|+
T Consensus 3 L~~L~l~~n~ 12 (17)
T PF13504_consen 3 LRTLDLSNNR 12 (17)
T ss_dssp -SEEEETSS-
T ss_pred cCEEECCCCC
Confidence 3333333333
No 76
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=89.78 E-value=0.0019 Score=69.60 Aligned_cols=39 Identities=26% Similarity=0.386 Sum_probs=24.0
Q ss_pred CCCCEEEccCCcccccCC----ccccCCCCCcEEECcCCcccc
Q 047929 505 TSLRSLNLRSNRLSGIIP----VPFENCSQLVALDMGENEFVG 543 (790)
Q Consensus 505 ~~L~~L~L~~n~i~~~~~----~~l~~l~~L~~L~l~~n~~~~ 543 (790)
..++.++++.|.++.... ..+..++.++.+.++.|.+.+
T Consensus 262 ~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 262 ETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred hhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 556667777776654433 334456677777777776654
No 77
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.88 E-value=0.061 Score=49.29 Aligned_cols=82 Identities=10% Similarity=0.097 Sum_probs=40.9
Q ss_pred CCCEEEccCCcccccCCccccCCCCCcEEECcCCcccccCc-hhhhhcCCCCcEEEcCCC-cccccCCccccCCCCCcEE
Q 047929 506 SLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIP-TWMGERFSRLRILNLRSN-KLHGIFPIQICHLSSLQIL 583 (790)
Q Consensus 506 ~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~~~~~L~~L~L~~n-~~~~~~~~~~~~l~~L~~L 583 (790)
.++.++-+++.|..+.-..+..++.++.|.+.+|...+..- ..+..-.++|+.|+|++| +|++..-..+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 34455555555554444455555555555555554332111 112223456666666665 3443333345556666666
Q ss_pred EccC
Q 047929 584 DVAY 587 (790)
Q Consensus 584 ~ls~ 587 (790)
.+.+
T Consensus 182 ~l~~ 185 (221)
T KOG3864|consen 182 HLYD 185 (221)
T ss_pred HhcC
Confidence 6654
No 78
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=87.92 E-value=0.4 Score=28.03 Aligned_cols=15 Identities=47% Similarity=0.680 Sum_probs=8.1
Q ss_pred CCCCEEeCcCccCcc
Q 047929 694 RSIESLDLSGNQISG 708 (790)
Q Consensus 694 ~~L~~L~l~~n~l~~ 708 (790)
++|+.|++++|++..
T Consensus 2 ~~L~~L~L~~N~l~~ 16 (26)
T smart00370 2 PNLRELDLSNNQLSS 16 (26)
T ss_pred CCCCEEECCCCcCCc
Confidence 455555555555553
No 79
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=87.92 E-value=0.4 Score=28.03 Aligned_cols=15 Identities=47% Similarity=0.680 Sum_probs=8.1
Q ss_pred CCCCEEeCcCccCcc
Q 047929 694 RSIESLDLSGNQISG 708 (790)
Q Consensus 694 ~~L~~L~l~~n~l~~ 708 (790)
++|+.|++++|++..
T Consensus 2 ~~L~~L~L~~N~l~~ 16 (26)
T smart00369 2 PNLRELDLSNNQLSS 16 (26)
T ss_pred CCCCEEECCCCcCCc
Confidence 455555555555553
No 80
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=86.83 E-value=0.024 Score=52.86 Aligned_cols=85 Identities=19% Similarity=0.222 Sum_probs=70.5
Q ss_pred ccceeEEEccCccCCCCCCcccccCCCCCEEeCCCCcCCcCCCccccCCCCCCEEeCcCccCccccCccccCCCCCCEEE
Q 047929 645 LNLVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLSFLNHLN 724 (790)
Q Consensus 645 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ 724 (790)
....+.||++.|.+- .+-..|.-++.|..|+++.|.+. ..|+.++.+..+..++...|..+ ..|.++..++.+++++
T Consensus 41 ~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e 117 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNE 117 (326)
T ss_pred cceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhh
Confidence 345678999988875 44556677888899999999886 78888898899999998888887 6889999999999999
Q ss_pred CcCCcccc
Q 047929 725 LSDNKLVG 732 (790)
Q Consensus 725 l~~n~l~~ 732 (790)
..+|++..
T Consensus 118 ~k~~~~~~ 125 (326)
T KOG0473|consen 118 QKKTEFFR 125 (326)
T ss_pred hccCcchH
Confidence 99998764
No 81
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.67 E-value=0.068 Score=48.99 Aligned_cols=81 Identities=23% Similarity=0.185 Sum_probs=37.8
Q ss_pred cEEEEEcCCCCCCccccccCcCCCCCCEEeCCCCCCCCCCcCcccc-CCCCCCEEeCCCCc-ccccCCCCCCCCCCCcEE
Q 047929 48 HVLELNLERSELGGKINPALVDLKHLNLLDLSGNDFQGIQIPEYIG-SMDNLRYLNLSGAG-FAGWIPHQLGNLSNLMHL 125 (790)
Q Consensus 48 ~v~~L~L~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~l~~~~~-~l~~L~~L~Ls~~~-~~~~lp~~l~~l~~L~~L 125 (790)
.|..++-+++.|..+--+-+.+++.++.|.+.+|...+.---+.++ -.++|+.|++++|. |++.--..+.++++|+-|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 3566666666665555555666666666666555432210011111 23455555555542 333222233444444444
Q ss_pred ECc
Q 047929 126 DLS 128 (790)
Q Consensus 126 ~ls 128 (790)
.+.
T Consensus 182 ~l~ 184 (221)
T KOG3864|consen 182 HLY 184 (221)
T ss_pred Hhc
Confidence 443
No 82
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=86.23 E-value=0.012 Score=63.70 Aligned_cols=38 Identities=26% Similarity=0.250 Sum_probs=22.3
Q ss_pred CCCCEEEccCCcccccc----chhhccCCCCcEEEccCcccC
Q 047929 323 FELESLFLRGCKISGQL----TNQLGLFKNLHTLALSDNSVS 360 (790)
Q Consensus 323 ~~L~~L~l~~~~~~~~~----~~~l~~l~~L~~L~L~~~~i~ 360 (790)
..+++++++.|.++... ...+..++.++.+.++.|.+.
T Consensus 262 ~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 262 ETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred hhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 34566666666655432 223444567777777777665
No 83
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=82.06 E-value=1.2 Score=25.91 Aligned_cols=20 Identities=35% Similarity=0.497 Sum_probs=12.8
Q ss_pred CCCCCEEeCCCCcCCcCCCc
Q 047929 669 LKGLQSLNLSHNSFIGKIPE 688 (790)
Q Consensus 669 l~~L~~L~L~~n~l~~~~p~ 688 (790)
+++|+.|+|++|.+....+.
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 35677777777777744333
No 84
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=82.06 E-value=1.2 Score=25.91 Aligned_cols=20 Identities=35% Similarity=0.497 Sum_probs=12.8
Q ss_pred CCCCCEEeCCCCcCCcCCCc
Q 047929 669 LKGLQSLNLSHNSFIGKIPE 688 (790)
Q Consensus 669 l~~L~~L~L~~n~l~~~~p~ 688 (790)
+++|+.|+|++|.+....+.
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 35677777777777744333
No 85
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=76.28 E-value=1.2 Score=25.31 Aligned_cols=12 Identities=33% Similarity=0.631 Sum_probs=3.9
Q ss_pred CCcEEECcCCcc
Q 047929 530 QLVALDMGENEF 541 (790)
Q Consensus 530 ~L~~L~l~~n~~ 541 (790)
+|++|++++|.+
T Consensus 3 ~L~~L~l~~n~i 14 (24)
T PF13516_consen 3 NLETLDLSNNQI 14 (24)
T ss_dssp T-SEEE-TSSBE
T ss_pred CCCEEEccCCcC
Confidence 333444444433
No 86
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=69.37 E-value=22 Score=37.69 Aligned_cols=21 Identities=19% Similarity=0.289 Sum_probs=12.3
Q ss_pred CcEEEEEcCCCCCCccccccC
Q 047929 47 GHVLELNLERSELGGKINPAL 67 (790)
Q Consensus 47 ~~v~~L~L~~~~~~~~~~~~l 67 (790)
.++++++++-+.+.+..|..+
T Consensus 165 pr~r~~dls~npi~dkvpihl 185 (553)
T KOG4242|consen 165 PRARQHDLSPNPIGDKVPIHL 185 (553)
T ss_pred chhhhhccCCCcccccCCccc
Confidence 456677777766655544333
No 87
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=64.48 E-value=5.8 Score=23.22 Aligned_cols=14 Identities=50% Similarity=0.729 Sum_probs=9.4
Q ss_pred CCCCEEeCcCccCc
Q 047929 694 RSIESLDLSGNQIS 707 (790)
Q Consensus 694 ~~L~~L~l~~n~l~ 707 (790)
++|+.|+++.|+|.
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 56667777777665
No 88
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=62.14 E-value=5.5 Score=23.25 Aligned_cols=13 Identities=38% Similarity=0.713 Sum_probs=6.8
Q ss_pred CCCEEeCcCccCc
Q 047929 695 SIESLDLSGNQIS 707 (790)
Q Consensus 695 ~L~~L~l~~n~l~ 707 (790)
+|+.|++++|+++
T Consensus 3 ~L~~L~vs~N~Lt 15 (26)
T smart00364 3 SLKELNVSNNQLT 15 (26)
T ss_pred ccceeecCCCccc
Confidence 4555555555554
No 89
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=52.26 E-value=12 Score=22.33 Aligned_cols=14 Identities=43% Similarity=0.679 Sum_probs=8.7
Q ss_pred CCCCEEeCcCccCc
Q 047929 694 RSIESLDLSGNQIS 707 (790)
Q Consensus 694 ~~L~~L~l~~n~l~ 707 (790)
++|++|||++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 35666666666664
No 90
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=44.93 E-value=11 Score=40.56 Aligned_cols=31 Identities=23% Similarity=0.290 Sum_probs=15.0
Q ss_pred CCcEEECcCCcccccCc------hhhhhcCCCCcEEE
Q 047929 530 QLVALDMGENEFVGNIP------TWMGERFSRLRILN 560 (790)
Q Consensus 530 ~L~~L~l~~n~~~~~~~------~~~~~~~~~L~~L~ 560 (790)
.|++|.+.+|++..... ..+.+.+|+|..||
T Consensus 271 ~Leel~l~GNPlc~tf~~~s~yv~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 271 PLEELVLEGNPLCTTFSDRSEYVSAIRELFPKLLRLD 307 (585)
T ss_pred CHHHeeecCCccccchhhhHHHHHHHHHhcchheeec
Confidence 45556666665543322 12233456665554
No 91
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=31.59 E-value=32 Score=19.85 Aligned_cols=12 Identities=33% Similarity=0.357 Sum_probs=7.7
Q ss_pred CCCCEEECcCCc
Q 047929 718 SFLNHLNLSDNK 729 (790)
Q Consensus 718 ~~L~~L~l~~n~ 729 (790)
++|++|++++|+
T Consensus 2 ~~L~~L~l~~C~ 13 (26)
T smart00367 2 PNLRELDLSGCT 13 (26)
T ss_pred CCCCEeCCCCCC
Confidence 456666666665
No 92
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=25.32 E-value=3.5e+02 Score=29.21 Aligned_cols=129 Identities=22% Similarity=0.103 Sum_probs=62.8
Q ss_pred CCCCEEEccCccccccCc------ccCcCCCCCCEEECCCCCCCCCCcchhccCCCCCcEEEccCCcCCCCCCccCCCC-
Q 047929 172 PSLKVLKLFSCKLHHFAP------LASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNL- 244 (790)
Q Consensus 172 ~~L~~L~l~~~~~~~~~~------~~l~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l- 244 (790)
..++.+.+..|....... ......+.+++++++.|.+.+ ..|..+..-.. -+.++.|..... .|..+
T Consensus 135 ~~l~~l~l~~cml~pdf~~kl~hs~~~rpnpr~r~~dls~npi~d-kvpihl~~p~~--pl~lr~c~lssk---fis~l~ 208 (553)
T KOG4242|consen 135 APLPPLGLLPCMLLPDFGQKLRHSTRARPNPRARQHDLSPNPIGD-KVPIHLPQPGN--PLSLRVCELSSK---FISKLL 208 (553)
T ss_pred ccCCccCchhccCchhhcccccchhhcCCcchhhhhccCCCcccc-cCCccccCCCC--ccchhhhhhhhh---HHHHhh
Confidence 345556665555432211 112234567788888887655 44443322111 144555544321 11111
Q ss_pred -----CCCcEEeCCCCcCCcccccccc---CCCCCCEEEccCcccccc--cCcccccCCCCCCEEEccCCCC
Q 047929 245 -----TSLRYLDLSYNQFNSTISDCFS---NFDDLEYLSLGYNRLQGT--ISSIGLENLTFIKTLDLSFNEL 306 (790)
Q Consensus 245 -----~~L~~L~l~~~~~~~~~~~~l~---~l~~L~~L~l~~~~l~~~--~~~~~l~~l~~L~~L~l~~~~~ 306 (790)
..+.+++++.|.....++..+. .-.-++.++.+...+.-+ +.......-++++..+++.|..
T Consensus 209 ~qsg~~~lteldls~n~~Kddip~~~n~~a~~~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~ 280 (553)
T KOG4242|consen 209 IQSGRLWLTELDLSTNGGKDDIPRTLNKKAGTLVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGT 280 (553)
T ss_pred hhhccccccccccccCCCCccchhHHHHhhhhhhhhcccccccccchhhcccccccccccccchhhhccCCC
Confidence 2467778888777665554332 223356666655543311 1122234455677777766643
No 93
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=23.79 E-value=44 Score=44.03 Aligned_cols=32 Identities=25% Similarity=0.384 Sum_probs=19.9
Q ss_pred eCCCCcCCcCCCccccCCCCCCEEeCcCccCc
Q 047929 676 NLSHNSFIGKIPETIGNMRSIESLDLSGNQIS 707 (790)
Q Consensus 676 ~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~ 707 (790)
+|++|+|+...+..|..+++|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 35666666555556666666666666666554
No 94
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=23.56 E-value=50 Score=35.97 Aligned_cols=68 Identities=26% Similarity=0.140 Sum_probs=41.0
Q ss_pred hhCCCCCCCEEEccCccccccCc--ccCcCCCCCCEEECCCCCCCCCCcchhccC--CCCCcEEEccCCcCCC
Q 047929 167 VINSLPSLKVLKLFSCKLHHFAP--LASANFSSLNALDLSGNLFGKTSIPSWVFG--LSDLVFLDLSSNIFRG 235 (790)
Q Consensus 167 ~l~~l~~L~~L~l~~~~~~~~~~--~~l~~l~~L~~L~L~~~~l~~~~lp~~l~~--l~~L~~L~l~~~~~~~ 235 (790)
.-.+.|.+..+++++|++..+.. ..-...++|+.|+|++|.... ....++.+ ...|++|-+.+|.+..
T Consensus 213 ~~~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~-~~~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 213 IEENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKI-SSESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred hhcCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhh-cchhhhhhhcCCCHHHeeecCCcccc
Confidence 33466777778888887665432 122356788888888872211 11222332 3457888888887764
Done!