Query 047929
Match_columns 790
No_of_seqs 457 out of 4445
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 07:40:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047929.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047929hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 2.2E-80 7.5E-85 722.6 54.8 710 4-769 10-756 (768)
2 3rgz_A Protein brassinosteroid 100.0 4.3E-65 1.5E-69 593.8 48.0 634 71-757 50-720 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 2.7E-54 9.2E-59 499.4 50.1 597 52-736 9-627 (680)
4 1ziw_A TOLL-like receptor 3; i 100.0 4.2E-54 1.4E-58 497.7 50.9 591 74-757 7-626 (680)
5 3t6q_A CD180 antigen; protein- 100.0 1.6E-51 5.4E-56 469.8 42.9 537 52-736 17-565 (606)
6 3vq2_A TLR4, TOLL-like recepto 100.0 1.1E-49 3.7E-54 454.6 42.4 534 51-736 15-563 (606)
7 3t6q_A CD180 antigen; protein- 100.0 5.2E-49 1.8E-53 449.0 45.6 528 74-753 15-559 (606)
8 3vq2_A TLR4, TOLL-like recepto 100.0 3.7E-47 1.3E-51 433.7 38.2 533 148-758 13-563 (606)
9 3j0a_A TOLL-like receptor 5; m 100.0 3.1E-46 1E-50 439.7 41.9 541 52-736 9-565 (844)
10 4eco_A Uncharacterized protein 100.0 8.4E-48 2.9E-52 437.6 26.5 109 5-117 29-159 (636)
11 2z63_A TOLL-like receptor 4, v 100.0 1.8E-45 6.3E-50 417.0 37.0 501 71-739 28-539 (570)
12 3j0a_A TOLL-like receptor 5; m 100.0 4.1E-45 1.4E-49 430.0 40.2 511 170-756 22-563 (844)
13 4ecn_A Leucine-rich repeat pro 100.0 5.7E-46 2E-50 427.8 32.0 509 4-729 267-862 (876)
14 2z81_A CD282 antigen, TOLL-lik 100.0 3.8E-44 1.3E-48 403.8 34.0 497 34-736 3-515 (549)
15 2z63_A TOLL-like receptor 4, v 100.0 1E-42 3.4E-47 394.5 38.5 490 172-754 28-531 (570)
16 4g8a_A TOLL-like receptor 4; l 100.0 2.1E-41 7E-46 389.5 40.8 530 58-734 42-583 (635)
17 2z81_A CD282 antigen, TOLL-lik 100.0 1.2E-41 4.1E-46 383.5 29.7 474 172-757 26-514 (549)
18 2z7x_B TOLL-like receptor 1, v 100.0 1.7E-41 5.7E-46 379.2 28.1 394 50-595 3-416 (520)
19 4eco_A Uncharacterized protein 100.0 1.6E-41 5.5E-46 385.9 19.5 346 319-732 202-601 (636)
20 2z7x_B TOLL-like receptor 1, v 100.0 7.6E-41 2.6E-45 373.9 24.0 460 175-735 3-485 (520)
21 4g8a_A TOLL-like receptor 4; l 100.0 6.3E-38 2.1E-42 360.5 41.5 525 77-755 37-582 (635)
22 4ecn_A Leucine-rich repeat pro 100.0 8.4E-39 2.9E-43 368.3 30.6 359 279-736 435-845 (876)
23 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2.5E-38 8.7E-43 356.2 32.7 463 48-735 32-514 (562)
24 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 3.1E-37 1.1E-41 347.4 27.6 456 199-754 34-510 (562)
25 1ogq_A PGIP-2, polygalacturona 100.0 1.2E-36 4.1E-41 314.5 19.0 293 2-382 2-302 (313)
26 3v47_A TOLL-like receptor 5B a 100.0 2.1E-35 7.2E-40 324.2 27.7 397 200-739 14-416 (455)
27 1jl5_A Outer protein YOPM; leu 100.0 3.2E-35 1.1E-39 319.0 24.0 429 65-598 5-436 (454)
28 3v47_A TOLL-like receptor 5B a 100.0 2.7E-34 9.1E-39 315.4 30.3 368 172-595 30-412 (455)
29 1jl5_A Outer protein YOPM; leu 100.0 1.9E-34 6.6E-39 312.8 27.7 405 194-755 9-430 (454)
30 3bz5_A Internalin-J, INLJ; leu 100.0 9.1E-32 3.1E-36 292.1 30.5 214 63-308 34-247 (457)
31 1o6v_A Internalin A; bacterial 100.0 1.6E-31 5.4E-36 293.2 31.8 347 267-733 44-390 (466)
32 2id5_A Lingo-1, leucine rich r 100.0 1.6E-31 5.6E-36 294.7 27.2 323 326-734 14-336 (477)
33 1o6v_A Internalin A; bacterial 100.0 1.1E-30 3.9E-35 286.4 33.1 345 171-592 45-389 (466)
34 3bz5_A Internalin-J, INLJ; leu 100.0 3.2E-31 1.1E-35 287.8 27.8 361 112-598 34-394 (457)
35 1ogq_A PGIP-2, polygalacturona 100.0 1.6E-31 5.4E-36 276.1 20.9 261 444-762 50-313 (313)
36 3o6n_A APL1; leucine-rich repe 100.0 1.7E-30 5.7E-35 278.5 26.8 278 25-382 3-283 (390)
37 2id5_A Lingo-1, leucine rich r 100.0 6.9E-30 2.4E-34 281.7 29.8 260 324-598 33-292 (477)
38 4fmz_A Internalin; leucine ric 100.0 2.1E-29 7.3E-34 265.6 30.5 304 46-384 43-346 (347)
39 3o6n_A APL1; leucine-rich repe 100.0 1.2E-29 4.1E-34 271.8 27.5 217 477-757 161-378 (390)
40 3oja_B Anopheles plasmodium-re 100.0 2E-29 6.9E-34 285.0 28.5 281 21-383 5-290 (597)
41 3oja_B Anopheles plasmodium-re 100.0 2.9E-29 9.9E-34 283.7 27.7 332 324-757 52-384 (597)
42 4fmz_A Internalin; leucine ric 100.0 1.5E-28 5E-33 259.2 29.2 307 66-408 39-345 (347)
43 4fcg_A Uncharacterized protein 100.0 1.1E-29 3.7E-34 263.8 13.5 276 3-306 24-313 (328)
44 1xku_A Decorin; proteoglycan, 100.0 5.1E-27 1.8E-31 245.2 28.8 248 48-312 32-281 (330)
45 1xku_A Decorin; proteoglycan, 100.0 6.3E-27 2.2E-31 244.5 27.2 289 348-729 32-330 (330)
46 2ft3_A Biglycan; proteoglycan, 100.0 3.7E-27 1.3E-31 246.3 25.3 293 48-381 34-330 (332)
47 2ft3_A Biglycan; proteoglycan, 100.0 4.2E-27 1.4E-31 245.9 25.2 288 348-729 34-331 (332)
48 1z7x_W Ribonuclease inhibitor; 100.0 1.5E-31 5.3E-36 294.0 -11.8 64 47-110 3-70 (461)
49 1z7x_W Ribonuclease inhibitor; 99.9 1.1E-30 3.9E-35 287.1 -6.5 368 294-732 3-412 (461)
50 2z80_A TOLL-like receptor 2, v 99.9 6.4E-26 2.2E-30 239.1 19.9 292 25-387 20-317 (353)
51 3ogk_B Coronatine-insensitive 99.9 3.7E-29 1.3E-33 284.4 -5.8 239 34-281 41-305 (592)
52 2z66_A Variable lymphocyte rec 99.9 1.3E-25 4.3E-30 232.0 17.0 253 35-308 7-262 (306)
53 3ogk_B Coronatine-insensitive 99.9 9.3E-28 3.2E-32 272.8 0.2 135 243-379 110-251 (592)
54 4fcg_A Uncharacterized protein 99.9 5.1E-25 1.7E-29 228.6 19.0 225 443-729 80-312 (328)
55 1ozn_A Reticulon 4 receptor; N 99.9 5.5E-25 1.9E-29 224.6 18.2 251 447-758 14-266 (285)
56 2z66_A Variable lymphocyte rec 99.9 1.7E-24 5.9E-29 223.4 18.1 249 74-336 10-261 (306)
57 2z80_A TOLL-like receptor 2, v 99.9 5.9E-25 2E-29 231.7 14.8 239 440-736 72-319 (353)
58 3zyi_A Leucine-rich repeat-con 99.9 1.3E-23 4.5E-28 229.2 25.1 247 423-732 57-304 (452)
59 3zyj_A Leucine-rich repeat-con 99.9 1.4E-23 4.7E-28 228.3 24.5 246 424-732 47-293 (440)
60 1ozn_A Reticulon 4 receptor; N 99.9 7.8E-24 2.7E-28 216.0 19.5 225 50-308 14-239 (285)
61 3zyj_A Leucine-rich repeat-con 99.9 3.1E-23 1E-27 225.5 25.2 248 445-755 44-294 (440)
62 3zyi_A Leucine-rich repeat-con 99.9 3.3E-23 1.1E-27 226.1 25.5 246 445-753 55-302 (452)
63 3o53_A Protein LRIM1, AGAP0063 99.9 4.1E-25 1.4E-29 228.8 8.3 267 325-735 12-280 (317)
64 3o53_A Protein LRIM1, AGAP0063 99.9 3E-25 1E-29 229.9 6.7 257 438-765 28-287 (317)
65 3g06_A SSPH2 (leucine-rich rep 99.9 3.3E-23 1.1E-27 231.1 21.5 284 25-388 12-301 (622)
66 2o6q_A Variable lymphocyte rec 99.9 1.8E-22 6.3E-27 203.7 23.0 215 32-281 2-217 (270)
67 2p1m_B Transport inhibitor res 99.9 1.6E-26 5.4E-31 262.9 -8.5 89 502-591 429-519 (594)
68 2p1m_B Transport inhibitor res 99.9 2.8E-26 9.6E-31 260.8 -8.7 236 439-731 284-544 (594)
69 1wwl_A Monocyte differentiatio 99.9 1.5E-24 5.3E-29 223.9 4.8 206 479-732 93-310 (312)
70 1wwl_A Monocyte differentiatio 99.9 2.4E-24 8.3E-29 222.4 4.6 252 440-756 39-311 (312)
71 3g06_A SSPH2 (leucine-rich rep 99.9 6.1E-21 2.1E-25 212.9 30.5 263 71-414 40-302 (622)
72 2z62_A TOLL-like receptor 4, v 99.9 6E-22 2.1E-26 200.9 20.0 211 481-737 28-243 (276)
73 3oja_A Leucine-rich immune mol 99.9 5E-23 1.7E-27 225.5 12.8 234 444-749 34-270 (487)
74 2o6q_A Variable lymphocyte rec 99.9 1.8E-21 6.3E-26 196.4 22.8 206 482-735 17-222 (270)
75 3oja_A Leucine-rich immune mol 99.9 6E-22 2.1E-26 217.0 16.2 218 479-754 32-250 (487)
76 2z62_A TOLL-like receptor 4, v 99.9 5E-21 1.7E-25 194.1 20.7 215 62-309 21-239 (276)
77 1p9a_G Platelet glycoprotein I 99.9 1.2E-20 4E-25 191.9 20.6 202 479-732 8-209 (290)
78 3rfs_A Internalin B, repeat mo 99.8 8.6E-21 2.9E-25 191.6 15.9 201 481-737 41-241 (272)
79 3rfs_A Internalin B, repeat mo 99.8 2.5E-20 8.5E-25 188.2 18.9 217 482-755 20-236 (272)
80 1p9a_G Platelet glycoprotein I 99.8 8.3E-20 2.8E-24 185.6 20.7 202 501-753 6-207 (290)
81 2ast_B S-phase kinase-associat 99.8 2.4E-22 8.2E-27 210.6 1.0 270 33-344 35-314 (336)
82 3m19_A Variable lymphocyte rec 99.8 3.4E-20 1.2E-24 184.8 16.4 214 481-766 14-234 (251)
83 2xwt_C Thyrotropin receptor; s 99.8 3.5E-20 1.2E-24 183.4 14.6 199 506-751 32-236 (239)
84 3m19_A Variable lymphocyte rec 99.8 1.6E-19 5.5E-24 179.9 19.3 191 32-282 2-192 (251)
85 2ca6_A RAN GTPase-activating p 99.8 5.3E-22 1.8E-26 211.9 1.2 248 435-735 23-320 (386)
86 2ast_B S-phase kinase-associat 99.8 7.5E-21 2.6E-25 199.2 8.0 249 422-736 49-311 (336)
87 3goz_A Leucine-rich repeat-con 99.8 3.1E-21 1.1E-25 203.7 5.0 260 425-733 3-299 (362)
88 2xwt_C Thyrotropin receptor; s 99.8 1.2E-19 4E-24 179.6 15.6 197 482-729 32-237 (239)
89 1h6u_A Internalin H; cell adhe 99.8 5.7E-19 2E-23 181.4 18.0 194 67-282 37-230 (308)
90 1h6u_A Internalin H; cell adhe 99.8 4.8E-19 1.6E-23 181.9 16.6 191 481-732 41-231 (308)
91 4glp_A Monocyte differentiatio 99.8 1.7E-19 5.9E-24 185.9 13.1 204 481-731 91-307 (310)
92 4glp_A Monocyte differentiatio 99.8 1.9E-19 6.6E-24 185.6 13.3 226 48-282 65-307 (310)
93 2ca6_A RAN GTPase-activating p 99.8 1.5E-20 5E-25 200.8 3.7 194 89-282 25-257 (386)
94 3goz_A Leucine-rich repeat-con 99.8 3.6E-20 1.2E-24 195.5 5.7 256 449-756 3-299 (362)
95 4ay9_X Follicle-stimulating ho 99.8 2E-18 6.9E-23 181.1 16.5 223 481-751 30-256 (350)
96 3cvr_A Invasion plasmid antige 99.8 4E-18 1.4E-22 187.6 14.4 207 24-266 32-251 (571)
97 2o6s_A Variable lymphocyte rec 99.7 1.1E-17 3.8E-22 161.4 14.2 86 505-591 28-113 (208)
98 4ay9_X Follicle-stimulating ho 99.7 9.7E-18 3.3E-22 175.8 13.4 240 35-302 9-254 (350)
99 2o6s_A Variable lymphocyte rec 99.7 2.1E-17 7E-22 159.5 14.4 111 481-592 28-138 (208)
100 3cvr_A Invasion plasmid antige 99.7 4.4E-17 1.5E-21 179.4 17.8 94 481-591 80-173 (571)
101 2v70_A SLIT-2, SLIT homolog 2 99.7 1.4E-17 4.7E-22 161.7 11.8 178 533-758 15-194 (220)
102 3e6j_A Variable lymphocyte rec 99.7 3E-16 1E-20 153.4 18.8 167 23-259 7-173 (229)
103 2v9t_B SLIT homolog 2 protein 99.7 1.5E-16 5E-21 154.4 15.8 153 532-732 14-166 (220)
104 1h6t_A Internalin B; cell adhe 99.7 2.6E-16 8.9E-21 160.0 15.7 172 67-282 42-213 (291)
105 1h6t_A Internalin B; cell adhe 99.7 3.4E-16 1.2E-20 159.1 16.0 170 504-732 45-214 (291)
106 3e6j_A Variable lymphocyte rec 99.7 4.3E-16 1.5E-20 152.3 15.7 155 532-735 22-176 (229)
107 1m9s_A Internalin B; cell inva 99.7 2.9E-16 9.8E-21 175.1 15.6 186 51-282 25-210 (605)
108 2v70_A SLIT-2, SLIT homolog 2 99.7 1E-15 3.5E-20 148.5 16.0 155 484-709 14-168 (220)
109 2xot_A Amphoterin-induced prot 99.7 4.3E-16 1.5E-20 163.9 13.3 113 484-600 21-134 (361)
110 1m9s_A Internalin B; cell inva 99.6 1.2E-15 4E-20 170.2 16.0 171 503-732 41-211 (605)
111 2xot_A Amphoterin-induced prot 99.6 9.2E-16 3.1E-20 161.4 13.8 180 446-683 20-202 (361)
112 2v9t_B SLIT homolog 2 protein 99.6 5.3E-15 1.8E-19 143.4 17.8 76 52-131 16-91 (220)
113 4ezg_A Putative uncharacterize 99.6 1.4E-15 4.7E-20 145.1 11.6 78 650-731 116-194 (197)
114 4ezg_A Putative uncharacterize 99.6 4.5E-15 1.6E-19 141.4 13.6 153 418-591 42-194 (197)
115 1w8a_A SLIT protein; signaling 99.6 2.4E-15 8E-20 142.5 10.7 112 648-759 56-168 (192)
116 1dce_A Protein (RAB geranylger 99.6 4.9E-18 1.7E-22 188.3 -9.8 96 648-746 465-565 (567)
117 1dce_A Protein (RAB geranylger 99.6 2.6E-17 9E-22 182.4 -5.4 105 198-309 443-548 (567)
118 1xeu_A Internalin C; cellular 99.6 1.4E-15 4.7E-20 152.0 7.4 75 50-131 22-96 (263)
119 1xeu_A Internalin C; cellular 99.6 6.3E-15 2.2E-19 147.2 11.9 171 69-260 17-187 (263)
120 2ell_A Acidic leucine-rich nuc 99.5 3.3E-14 1.1E-18 131.6 10.2 133 554-732 24-161 (168)
121 4b8c_D Glucose-repressible alc 99.5 1.8E-15 6.3E-20 173.2 2.1 220 6-239 132-359 (727)
122 4b8c_D Glucose-repressible alc 99.5 3.7E-15 1.2E-19 170.7 3.7 143 521-712 216-359 (727)
123 3sb4_A Hypothetical leucine ri 99.5 2.3E-14 7.8E-19 148.8 9.2 285 293-606 24-325 (329)
124 1w8a_A SLIT protein; signaling 99.5 4.8E-14 1.6E-18 133.5 10.5 132 532-711 11-143 (192)
125 2wfh_A SLIT homolog 2 protein 99.5 2.7E-13 9.2E-18 128.2 14.6 129 557-733 13-141 (193)
126 2je0_A Acidic leucine-rich nuc 99.5 4.8E-14 1.6E-18 127.6 8.0 129 553-727 16-149 (149)
127 2ell_A Acidic leucine-rich nuc 99.5 1.3E-13 4.4E-18 127.6 10.8 138 576-759 22-165 (168)
128 3sb4_A Hypothetical leucine ri 99.5 1.2E-13 3.9E-18 143.5 11.0 206 480-732 100-311 (329)
129 2o6r_A Variable lymphocyte rec 99.5 4.4E-13 1.5E-17 125.2 13.4 89 648-736 54-142 (177)
130 4fdw_A Leucine rich hypothetic 99.4 5.2E-12 1.8E-16 133.6 20.9 201 476-729 175-381 (401)
131 4fdw_A Leucine rich hypothetic 99.4 2E-11 6.8E-16 129.2 23.5 223 173-407 158-381 (401)
132 4fs7_A Uncharacterized protein 99.4 2.3E-11 7.9E-16 129.5 23.8 331 236-606 62-392 (394)
133 2je0_A Acidic leucine-rich nuc 99.4 1E-12 3.4E-17 118.9 10.6 124 481-607 17-145 (149)
134 2o6r_A Variable lymphocyte rec 99.4 2.6E-12 8.8E-17 119.9 13.5 133 446-595 9-141 (177)
135 4fs7_A Uncharacterized protein 99.4 1.4E-11 4.8E-16 131.1 21.0 123 439-583 271-393 (394)
136 2wfh_A SLIT homolog 2 protein 99.4 4.2E-12 1.4E-16 120.0 14.6 127 175-307 13-139 (193)
137 1a9n_A U2A', U2A'; complex (nu 99.3 1.7E-12 5.6E-17 121.1 8.3 63 667-731 85-153 (176)
138 1a9n_A U2A', U2A'; complex (nu 99.3 3.3E-12 1.1E-16 119.0 9.6 134 525-708 15-154 (176)
139 1ds9_A Outer arm dynein; leuci 99.3 4.9E-14 1.7E-18 134.4 -4.5 128 552-730 46-184 (198)
140 3g39_A Variable lymphocyte rec 99.3 1.2E-11 4E-16 114.3 11.2 90 647-736 31-120 (170)
141 1ds9_A Outer arm dynein; leuci 99.3 4.7E-14 1.6E-18 134.5 -6.5 152 552-754 16-185 (198)
142 2r9u_A Variable lymphocyte rec 99.2 5.3E-11 1.8E-15 110.1 11.5 88 648-735 35-122 (174)
143 3g39_A Variable lymphocyte rec 99.2 5.7E-11 1.9E-15 109.6 11.1 104 648-754 11-115 (170)
144 2r9u_A Variable lymphocyte rec 99.2 6.6E-11 2.3E-15 109.5 11.2 103 649-754 15-118 (174)
145 3un9_A NLR family member X1; l 99.2 1.1E-12 3.7E-17 137.4 -2.3 187 505-731 72-283 (372)
146 4gt6_A Cell surface protein; l 99.1 1.3E-08 4.6E-13 108.0 26.3 131 439-590 260-390 (394)
147 4gt6_A Cell surface protein; l 99.1 9.3E-09 3.2E-13 109.3 23.6 65 236-302 54-122 (394)
148 2ifg_A High affinity nerve gro 99.0 8.7E-10 3E-14 115.2 10.1 102 650-753 12-115 (347)
149 3un9_A NLR family member X1; l 98.9 3.6E-11 1.2E-15 125.9 -2.6 16 345-360 237-252 (372)
150 2ifg_A High affinity nerve gro 98.9 3.3E-09 1.1E-13 110.8 9.6 58 649-707 59-116 (347)
151 4h09_A Hypothetical leucine ri 98.8 8.3E-07 2.8E-11 93.7 25.6 66 650-717 290-355 (379)
152 4h09_A Hypothetical leucine ri 98.7 1.4E-06 4.8E-11 92.0 24.1 87 438-539 257-343 (379)
153 2ra8_A Uncharacterized protein 98.7 5.1E-09 1.7E-13 108.4 2.7 202 46-280 106-341 (362)
154 2ra8_A Uncharacterized protein 98.6 9.3E-08 3.2E-12 99.0 8.0 62 213-277 164-227 (362)
155 1io0_A Tropomodulin; LRR prote 98.3 4.7E-08 1.6E-12 91.2 -0.7 72 62-133 27-106 (185)
156 1io0_A Tropomodulin; LRR prote 98.1 2.8E-07 9.6E-12 85.8 -0.7 123 88-234 28-164 (185)
157 3e4g_A ATP synthase subunit S, 98.0 1.8E-06 6.1E-11 77.9 2.5 85 505-589 61-150 (176)
158 3e4g_A ATP synthase subunit S, 98.0 1E-06 3.6E-11 79.4 0.1 82 48-130 62-149 (176)
159 3rw6_A Nuclear RNA export fact 97.9 7.6E-06 2.6E-10 79.9 5.2 66 668-735 168-237 (267)
160 3rw6_A Nuclear RNA export fact 97.9 8.5E-06 2.9E-10 79.6 4.5 81 643-725 167-258 (267)
161 1pgv_A TMD-1, tropomodulin TMD 97.0 7.7E-05 2.6E-09 68.6 -0.8 94 62-155 32-135 (197)
162 3rfe_A Platelet glycoprotein I 96.9 0.0015 5E-08 56.1 6.7 56 674-731 12-68 (130)
163 1pgv_A TMD-1, tropomodulin TMD 96.4 0.0013 4.5E-08 60.4 2.6 91 90-180 35-134 (197)
164 3rfe_A Platelet glycoprotein I 95.7 0.018 6.3E-07 49.2 6.6 56 650-707 12-68 (130)
165 2lz0_A Uncharacterized protein 48.2 18 0.00062 28.6 4.0 40 498-538 13-52 (100)
166 2lz0_A Uncharacterized protein 31.9 65 0.0022 25.3 4.9 40 64-105 13-52 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2.2e-80 Score=722.58 Aligned_cols=710 Identities=29% Similarity=0.415 Sum_probs=504.3
Q ss_pred hHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCcccCceeecCCCCcEEEEEcCCCCCCcc---ccccCcCCCCCCEEeCCC
Q 047929 4 LESERVALIKLKQDFKDPSNHLASWIGDVDCCEWGGVVCNNITGHVLELNLERSELGGK---INPALVDLKHLNLLDLSG 80 (790)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~c~~~~~~v~~L~L~~~~~~~~---~~~~l~~l~~L~~L~Ls~ 80 (790)
.+.|+.||++||+++.||. ++++|..+++||.|.||.|+ .++|++|+|+++.+.+. +|+++.++++|+.++++.
T Consensus 10 ~~~~~~all~~k~~~~~~~-~l~~W~~~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~ 86 (768)
T 3rgz_A 10 LYREIHQLISFKDVLPDKN-LLPDWSSNKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSN 86 (768)
T ss_dssp HHHHHHHHHHHHTTCSCTT-SSTTCCTTSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTT
T ss_pred CHHHHHHHHHHHhhCCCcc-cccCCCCCCCCcCCcceEEC--CCcEEEEECCCCCcCCccCccChhHhccCcccccCCcC
Confidence 4579999999999999998 99999766899999999998 68999999999999988 889999999999999999
Q ss_pred CCCCCCCcCccccCCCCCCEEeCCCCcccccCCC--CCCCCCCCcEEECcCCcccccccCccccCCCCCCcEEECCCCCC
Q 047929 81 NDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPH--QLGNLSNLMHLDLSGSYYELRVEDISWLAGPSLLEHLDTSDVDL 158 (790)
Q Consensus 81 ~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~lp~--~l~~l~~L~~L~ls~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 158 (790)
+.+. .+|+.++++++|++|+|++|.+.+.+|. .++++++|++|++++|.+..... ...+.++++|++|+++++.+
T Consensus 87 ~~~~--~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~-~~~~~~l~~L~~L~Ls~n~l 163 (768)
T 3rgz_A 87 SHIN--GSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGK-VSGGLKLNSLEVLDLSANSI 163 (768)
T ss_dssp SCEE--ECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSS-CCSCCCCTTCSEEECCSSCC
T ss_pred CCcC--CCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCC-HHHhccCCCCCEEECCCCcc
Confidence 9876 4678999999999999999999988888 89999999999999997642211 11224566666666666665
Q ss_pred CCC-chhHHhhCCCCCCCEEEccCccccccCcccCcCCCCCCEEECCCCCCCCCCcchhccCCCCCcEEEccCCcCCCCC
Q 047929 159 IKA-SDWLLVINSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPI 237 (790)
Q Consensus 159 ~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L~l~~~~~~~~~ 237 (790)
.+. +.....+.++++|++|++++|.+....+. ..+++|++|++++|.+.+ .+|. +..+++|++|++++|.+.+.+
T Consensus 164 ~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~l~~-~~~~-l~~l~~L~~L~Ls~n~l~~~~ 239 (768)
T 3rgz_A 164 SGANVVGWVLSDGCGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFST-GIPF-LGDCSALQHLDISGNKLSGDF 239 (768)
T ss_dssp EEETHHHHHHTTCCTTCCEEECCSSEEESCCBC--TTCTTCCEEECCSSCCCS-CCCB-CTTCCSCCEEECCSSCCCSCH
T ss_pred CCcCChhhhhhccCCCCCEEECCCCcccccCCc--ccCCcCCEEECcCCcCCC-CCcc-cccCCCCCEEECcCCcCCCcc
Confidence 544 22112255556666666665555543322 445555555555555543 2333 455555555555555555445
Q ss_pred CccCCCCCCCcEEeCCCCcCCccccccccCCCCCCEEEccCcccccccCcccccCCCCCCEEEccCCCCCCCcchhhhhh
Q 047929 238 PDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQDISEILDII 317 (790)
Q Consensus 238 p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~ 317 (790)
|..+..+++|++|++++|.+.+..|.. .+++|++|++++|.+.+.+|......++
T Consensus 240 ~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~----------------------- 294 (768)
T 3rgz_A 240 SRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACD----------------------- 294 (768)
T ss_dssp HHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCT-----------------------
T ss_pred cHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcC-----------------------
Confidence 555555555555555555554443332 4455555555555554444443122224
Q ss_pred hccccCCCCEEEccCCccccccchhhccCCCCcEEEccCcccCCCCCcC-cCCCCCCCEEECcCCcCCCcCChhhhcccc
Q 047929 318 SACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVSGPLPPA-SGELSSLTYLDLSNNNLNGMISEIHFGNLT 396 (790)
Q Consensus 318 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~ 396 (790)
+|++|++++|.+.+..|..+..+++|++|++++|.+.+.+|.. +..+++|++|++++|.+.+..+. .+..++
T Consensus 295 ------~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~-~l~~l~ 367 (768)
T 3rgz_A 295 ------TLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPE-SLTNLS 367 (768)
T ss_dssp ------TCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCT-THHHHT
T ss_pred ------cCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccH-HHHhhh
Confidence 4555555555554445555555555555555555554444433 45555555555555555443333 233443
Q ss_pred -ccceeecCCCcceeecCCCCCC--cccceEEEcCCCCCCCCCCcccccCCCCCEEEccCCccCCCcccccccccccccC
Q 047929 397 -ELAFFYANGNSVNFKINSKWVP--PFQLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTI 473 (790)
Q Consensus 397 -~L~~l~l~~~~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~ 473 (790)
+|+.++++.|.+....+..+.. +++|+.|++++|.+.+..|..+..+++|++|++++|.+.+. +
T Consensus 368 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-------------~ 434 (768)
T 3rgz_A 368 ASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGT-------------I 434 (768)
T ss_dssp TTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESC-------------C
T ss_pred cCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCc-------------c
Confidence 5555555555555555544443 66778888888887777888888888888888888886643 4
Q ss_pred CCccCCCCCCcEEEccCCcccccCCcCCCCCCCCCEEEccCCcccccCCccccCCCCCcEEECcCCcccccCchhhhhcC
Q 047929 474 PDCWMNWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERF 553 (790)
Q Consensus 474 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~ 553 (790)
|..+..+++|+.|++++|.+.+.+|..+..+++|++|++++|++++..|..+..+++|++|++++|.+.+.+|.++. .+
T Consensus 435 p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~-~l 513 (768)
T 3rgz_A 435 PSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG-RL 513 (768)
T ss_dssp CGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG-GC
T ss_pred cHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHh-cC
Confidence 45567778888899998888888888888888899999999988888888888888999999999988888888775 68
Q ss_pred CCCcEEEcCCCcccccCCccccCCCCCcEEEccCCcccccCCcchhccccccccCCccccceeec---------------
Q 047929 554 SRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCINNFTAMATIGSHHQVKAIYH--------------- 618 (790)
Q Consensus 554 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~--------------- 618 (790)
++|++|++++|++++..|..++.+++|+.|++++|++.+.+|..+.....+............+.
T Consensus 514 ~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 593 (768)
T 3rgz_A 514 ENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNL 593 (768)
T ss_dssp TTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEE
T ss_pred CCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccc
Confidence 88999999999988888888888899999999999988888887766555443321110000000
Q ss_pred --------cc---ccccceeeeeeeeeccchhhhhhcccceeEEEccCccCCCCCCcccccCCCCCEEeCCCCcCCcCCC
Q 047929 619 --------AS---FENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIP 687 (790)
Q Consensus 619 --------~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p 687 (790)
.. ...............+........++.|+.|||++|++++.+|..++.+++|++|+|++|.+++.+|
T Consensus 594 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip 673 (768)
T 3rgz_A 594 LEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIP 673 (768)
T ss_dssp EECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCC
T ss_pred cccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCC
Confidence 00 0000000000000111112233446789999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCEEeCcCccCccccCccccCCCCCCEEECcCCcccccCCCCCcCCccCCccccCC-cccCCCCCCCCcccc
Q 047929 688 ETIGNMRSIESLDLSGNQISGKIPQSMSSLSFLNHLNLSDNKLVGKIPSSTQLQSFGASSITGN-DLCGAPLSNCTEKNV 766 (790)
Q Consensus 688 ~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~sl~~l~~~~n-~l~~~~~~~c~~~~~ 766 (790)
..|+.+++|+.||+++|++++.+|..+..+++|++|++++|++.|.+|..+++.++...++.|| .+||.|+..|...+.
T Consensus 674 ~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~~C~~~~~ 753 (768)
T 3rgz_A 674 DEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPSNA 753 (768)
T ss_dssp GGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSCCCCSCC-
T ss_pred hHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCcCCCCCcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999 899999989976665
Q ss_pred ccc
Q 047929 767 LAL 769 (790)
Q Consensus 767 ~~~ 769 (790)
..+
T Consensus 754 ~~~ 756 (768)
T 3rgz_A 754 DGY 756 (768)
T ss_dssp ---
T ss_pred CCC
Confidence 433
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=4.3e-65 Score=593.81 Aligned_cols=634 Identities=27% Similarity=0.352 Sum_probs=481.8
Q ss_pred CCCCEEeCCCCCCCCC--CcCccccCCCCCCEEeCCCCcccccCCCCCCCCCCCcEEECcCCcccccccCccccCCCCCC
Q 047929 71 KHLNLLDLSGNDFQGI--QIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHLDLSGSYYELRVEDISWLAGPSLL 148 (790)
Q Consensus 71 ~~L~~L~Ls~~~~~~~--~l~~~~~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~ls~~~~~~~~~~~~~l~~l~~L 148 (790)
.+++.|+|+++.+.+. .+|..+.++++|+.++++.+.+.. +|..++++++|++|++++|.+.........++++++|
T Consensus 50 ~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~~-l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L 128 (768)
T 3rgz_A 50 DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHING-SVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGL 128 (768)
T ss_dssp TEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEEE-CCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTC
T ss_pred CcEEEEECCCCCcCCccCccChhHhccCcccccCCcCCCcCC-CchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCC
Confidence 5789999999988752 167889999999999999998865 7889999999999999999865333333345555555
Q ss_pred cEEECCCCCCCCCchhHHhhCCCCCCCEEEccCccccccCcccC-cCCCCCCEEECCCCCCCCCCcchh---ccCCCCCc
Q 047929 149 EHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLAS-ANFSSLNALDLSGNLFGKTSIPSW---VFGLSDLV 224 (790)
Q Consensus 149 ~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l-~~l~~L~~L~L~~~~l~~~~lp~~---l~~l~~L~ 224 (790)
++|++++|.+. ...+..+ .++++|++|++++|.+.+ ..|.. +..+++|+
T Consensus 129 ~~L~Ls~n~l~--------------------------~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~~~~l~~L~ 181 (768)
T 3rgz_A 129 KFLNVSSNTLD--------------------------FPGKVSGGLKLNSLEVLDLSANSISG-ANVVGWVLSDGCGELK 181 (768)
T ss_dssp CEEECCSSEEE--------------------------CCSSCCSCCCCTTCSEEECCSSCCEE-ETHHHHHHTTCCTTCC
T ss_pred CEEECcCCccC--------------------------CcCCHHHhccCCCCCEEECCCCccCC-cCChhhhhhccCCCCC
Confidence 55555555443 3322222 444455555555554433 22222 34445555
Q ss_pred EEEccCCcCCCCCCccCCCCCCCcEEeCCCCcCCccccccccCCCCCCEEEccCcccccccCcccccCCCCCCEEEccCC
Q 047929 225 FLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFN 304 (790)
Q Consensus 225 ~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~l~~L~~L~l~~~ 304 (790)
+|++++|.+.+..| +..+++|++|++++|.+.+..|. +..+++|++|++++|.+.+.++.. +..+++|++|++++|
T Consensus 182 ~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~-l~~l~~L~~L~Ls~n 257 (768)
T 3rgz_A 182 HLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRA-ISTCTELKLLNISSN 257 (768)
T ss_dssp EEECCSSEEESCCB--CTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHH-TTTCSSCCEEECCSS
T ss_pred EEECCCCcccccCC--cccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHH-HhcCCCCCEEECCCC
Confidence 55555555443332 24455555555555555444443 555555555555555554443333 455555555555555
Q ss_pred CCCCCcchhhhhhhccccCCCCEEEccCCccccccchhhccC-CCCcEEEccCcccCCCCCcCcCCCCCCCEEECcCCcC
Q 047929 305 ELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLF-KNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNL 383 (790)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l-~~L~~L~L~~~~i~~~~~~~~~~l~~L~~L~l~~n~~ 383 (790)
.+.+..+. ..+++|++|++++|.+++..|..+... ++|++|++++|.+.+.+|..++.+++|++|++++|.+
T Consensus 258 ~l~~~~~~-------~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l 330 (768)
T 3rgz_A 258 QFVGPIPP-------LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNF 330 (768)
T ss_dssp CCEESCCC-------CCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEE
T ss_pred cccCccCc-------cccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcc
Confidence 54433332 145677777888887777777777664 9999999999999999999999999999999999999
Q ss_pred CCcCChhhhccccccceeecCCCcceeecCCCCCCcc-cceEEEcCCCCCCCCCCccccc--CCCCCEEEccCCccCCCc
Q 047929 384 NGMISEIHFGNLTELAFFYANGNSVNFKINSKWVPPF-QLLALRLRSCHLGPHFPSWLHS--QKHLSKLDISNTRISDII 460 (790)
Q Consensus 384 ~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~--~~~L~~L~l~~~~i~~~~ 460 (790)
.+..+...+..+++|+.++++.|.+....+..+..++ +|+.|++++|.+.+..+..+.. +++|++|++++|.+.+
T Consensus 331 ~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-- 408 (768)
T 3rgz_A 331 SGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTG-- 408 (768)
T ss_dssp EEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEE--
T ss_pred cCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCcccc--
Confidence 8777776789999999999999999988888888877 9999999999998877777766 8899999999999764
Q ss_pred ccccccccccccCCCccCCCCCCcEEEccCCcccccCCcCCCCCCCCCEEEccCCcccccCCccccCCCCCcEEECcCCc
Q 047929 461 PRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENE 540 (790)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~ 540 (790)
.+|..+..+++|+.|++++|.+++..|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.
T Consensus 409 -----------~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~ 477 (768)
T 3rgz_A 409 -----------KIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFND 477 (768)
T ss_dssp -----------ECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSC
T ss_pred -----------ccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCc
Confidence 345667888999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCchhhhhcCCCCcEEEcCCCcccccCCccccCCCCCcEEEccCCcccccCCcchhccccccccCCcc-cc-ceeec
Q 047929 541 FVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCINNFTAMATIGSHH-QV-KAIYH 618 (790)
Q Consensus 541 ~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~~~~-~~-~~~~~ 618 (790)
+.+.+|..+. .+++|++|++++|++++..|..+..+++|+.|++++|.+.+.+|..+..+++|+.++... .. +.++.
T Consensus 478 l~~~~p~~l~-~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~ 556 (768)
T 3rgz_A 478 LTGEIPSGLS-NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPA 556 (768)
T ss_dssp CCSCCCGGGG-GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCG
T ss_pred ccCcCCHHHh-cCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCCh
Confidence 9999998875 799999999999999999999999999999999999999999999999999999887322 22 12222
Q ss_pred cccccccee-------eeeee-----------------eeccchhhhhhcccceeEEEccCccCCCCCCcccccCCCCCE
Q 047929 619 ASFENDYIV-------EEISL-----------------VMKGFMVEYNSILNLVRSIDISMNNFSGEIPMEVTNLKGLQS 674 (790)
Q Consensus 619 ~~~~~~~~~-------~~~~~-----------------~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 674 (790)
..+...... ..... ............+..++.++++.|.+.+.+|..+..+++|+.
T Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~ 636 (768)
T 3rgz_A 557 AMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMF 636 (768)
T ss_dssp GGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCE
T ss_pred HHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccE
Confidence 111100000 00000 001111111223344556778888899999999999999999
Q ss_pred EeCCCCcCCcCCCccccCCCCCCEEeCcCccCccccCccccCCCCCCEEECcCCcccccCCCC-CcCCccCCccccCCcc
Q 047929 675 LNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLSFLNHLNLSDNKLVGKIPSS-TQLQSFGASSITGNDL 753 (790)
Q Consensus 675 L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~-~~~~sl~~l~~~~n~l 753 (790)
|++++|++++.+|..++.+++|+.|++++|++++.+|..++.+++|+.|++++|++.|.+|.. ..+.+|+.+++++|.+
T Consensus 637 LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l 716 (768)
T 3rgz_A 637 LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNL 716 (768)
T ss_dssp EECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEE
T ss_pred EECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcc
Confidence 999999999999999999999999999999999999999999999999999999999999987 5688999999999999
Q ss_pred cCCC
Q 047929 754 CGAP 757 (790)
Q Consensus 754 ~~~~ 757 (790)
.|..
T Consensus 717 ~g~i 720 (768)
T 3rgz_A 717 SGPI 720 (768)
T ss_dssp EEEC
T ss_pred cccC
Confidence 8754
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=2.7e-54 Score=499.35 Aligned_cols=597 Identities=19% Similarity=0.187 Sum_probs=368.9
Q ss_pred EEcCCCCCCccccccCcCCCCCCEEeCCCCCCCCCCcCccccCCCCCCEEeCCCCcccccCCCCCCCCCCCcEEECcCCc
Q 047929 52 LNLERSELGGKINPALVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHLDLSGSY 131 (790)
Q Consensus 52 L~L~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~ls~~~ 131 (790)
++.++.+++ .+|..+. +++++|+|++|.+.+. .+..|.++++|++|++++|.+++..|.+++++++|++|++++|.
T Consensus 9 ~~cs~~~L~-~ip~~~~--~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 84 (680)
T 1ziw_A 9 ADCSHLKLT-QVPDDLP--TNITVLNLTHNQLRRL-PAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 84 (680)
T ss_dssp EECCSSCCS-SCCSCSC--TTCSEEECCSSCCCCC-CGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSC
T ss_pred eECCCCCcc-ccccccC--CCCcEEECCCCCCCCc-CHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCc
Confidence 445555554 4454443 6777777777777754 44567777777777777777777667777777777777777775
Q ss_pred ccccccCccccCCCCCCcEEECCCCCCCCCchhHHhhCCCCCCCEEEccCccccccCcccCcCCCCCCEEECCCCCCCCC
Q 047929 132 YELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKT 211 (790)
Q Consensus 132 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~ 211 (790)
+...+. . .+.++++|++|++++|.+..+++..++++++|++|++++|.+.+
T Consensus 85 l~~l~~--~--------------------------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~- 135 (680)
T 1ziw_A 85 LSQLSD--K--------------------------TFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSS- 135 (680)
T ss_dssp CCCCCT--T--------------------------TTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSC-
T ss_pred cCccCh--h--------------------------hhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccc-
Confidence 442221 1 23344444444444444444444455555555555555555433
Q ss_pred CcchhccCCCCCcEEEccCCcCCCCCCccCC--CCCCCcEEeCCCCcCCccccccccCCCCCCEEEccCcccccccCccc
Q 047929 212 SIPSWVFGLSDLVFLDLSSNIFRGPIPDGFK--NLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIG 289 (790)
Q Consensus 212 ~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~--~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~ 289 (790)
..|..+..+++|++|++++|.+.+..+..+. .+++|++|++++|.+.+..+..+..+++|+.|++.++.+........
T Consensus 136 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~ 215 (680)
T 1ziw_A 136 TKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKL 215 (680)
T ss_dssp CCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHH
T ss_pred cCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHH
Confidence 2333444455555555555555443333222 33455555555555555555555555555555555544332111100
Q ss_pred --ccCCCCCCEEEccCCCCCCCcchhhhhhhcccc--CCCCEEEccCCccccccchhhccCCCCcEEEccCcccCCCCCc
Q 047929 290 --LENLTFIKTLDLSFNELGQDISEILDIISACAA--FELESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVSGPLPP 365 (790)
Q Consensus 290 --l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~~~~~ 365 (790)
....++|+.|++++|.+.+..+.. +..+ ++|++|++++|.+.+..+..+..+++|++|++++|.+.+..|.
T Consensus 216 ~~~l~~~~L~~L~L~~n~l~~~~~~~-----~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 290 (680)
T 1ziw_A 216 CLELANTSIRNLSLSNSQLSTTSNTT-----FLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSH 290 (680)
T ss_dssp HHHHTTSCCCEEECTTSCCCEECTTT-----TGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTT
T ss_pred HHHhhhccccEEEccCCcccccChhH-----hhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChh
Confidence 012345566666666555444331 1222 3466666666666655556666666677777777666666666
Q ss_pred CcCCCCCCCEEECcCCcCCCc--------CChhhhccccccceeecCCCcceeecCCCCCCcccceEEEcCCCCCCCC--
Q 047929 366 ASGELSSLTYLDLSNNNLNGM--------ISEIHFGNLTELAFFYANGNSVNFKINSKWVPPFQLLALRLRSCHLGPH-- 435 (790)
Q Consensus 366 ~~~~l~~L~~L~l~~n~~~~~--------~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-- 435 (790)
.+..+++|+.|++++|...+. .....+..+++|+.+++++|.+....+..+..+++|+.|++++|.+...
T Consensus 291 ~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l 370 (680)
T 1ziw_A 291 SLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTL 370 (680)
T ss_dssp TTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEE
T ss_pred hhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhc
Confidence 666667777777666543221 1112345566666666666666555555556666666666666653321
Q ss_pred CCccccc--CCCCCEEEccCCccCCCcccccccccccccCCCccCCCCCCcEEEccCCcccccCC-cCCCCCCCCCEEEc
Q 047929 436 FPSWLHS--QKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIP-ISMGTLTSLRSLNL 512 (790)
Q Consensus 436 ~~~~~~~--~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~L 512 (790)
....+.. .++|+.|++++|.+..+. +..+..+++|+.|++++|.+.+.++ ..+..+++|++|++
T Consensus 371 ~~~~f~~~~~~~L~~L~L~~n~l~~~~-------------~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L 437 (680)
T 1ziw_A 371 TNETFVSLAHSPLHILNLTKNKISKIE-------------SDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYL 437 (680)
T ss_dssp CTTTTGGGTTSCCCEEECTTSCCCEEC-------------TTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEEC
T ss_pred chhhhcccccCcCceEECCCCCCCeEC-------------hhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEec
Confidence 1112222 246778888877765432 3445667788888888888775444 56777788888888
Q ss_pred cCCcccccCCccccCCCCCcEEECcCCccc--ccCchhhhhcCCCCcEEEcCCCcccccCCccccCCCCCcEEEccCCcc
Q 047929 513 RSNRLSGIIPVPFENCSQLVALDMGENEFV--GNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRL 590 (790)
Q Consensus 513 ~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~--~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l 590 (790)
++|++....+..|..+++|+.|++++|.+. +.+|..+. .+++|++|++++|++++..+..+..+++|+.|++++|.+
T Consensus 438 s~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~-~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l 516 (680)
T 1ziw_A 438 SYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQ-PLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNL 516 (680)
T ss_dssp CSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CCCCcceeChhhhhcCcccccchhccccccccccCCcccc-cCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCc
Confidence 888877777777777888888888887765 34555553 677888888888888777667777888888888888877
Q ss_pred cccCCcchhccccccccCCccccceeecccccccceeeeeeeeeccchhhhhhcccceeEEEccCccCCCCCCcccccCC
Q 047929 591 SGSVPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGEIPMEVTNLK 670 (790)
Q Consensus 591 ~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~ 670 (790)
++..+..+..- .......++.|+.|+|++|.+....+..|..++
T Consensus 517 ~~~~~~~~~~~------------------------------------~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~ 560 (680)
T 1ziw_A 517 ARLWKHANPGG------------------------------------PIYFLKGLSHLHILNLESNGFDEIPVEVFKDLF 560 (680)
T ss_dssp GGGGSTTSTTS------------------------------------CCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred cccchhhccCC------------------------------------cchhhcCCCCCCEEECCCCCCCCCCHHHccccc
Confidence 64322111100 000112345677899999999854445688899
Q ss_pred CCCEEeCCCCcCCcCCCccccCCCCCCEEeCcCccCccccCcccc-CCCCCCEEECcCCcccccCCC
Q 047929 671 GLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMS-SLSFLNHLNLSDNKLVGKIPS 736 (790)
Q Consensus 671 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~-~l~~L~~L~l~~n~l~~~~p~ 736 (790)
+|++|++++|.+++..+..|.++++|+.|++++|++++..|..+. .+++|+.|++++|++....+.
T Consensus 561 ~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 561 ELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred CcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCcc
Confidence 999999999999877777788899999999999999987777777 788999999999999877664
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=4.2e-54 Score=497.73 Aligned_cols=591 Identities=20% Similarity=0.189 Sum_probs=486.9
Q ss_pred CEEeCCCCCCCCCCcCccccCCCCCCEEeCCCCcccccCCCCCCCCCCCcEEECcCCcccccccCccccCCCCCCcEEEC
Q 047929 74 NLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHLDLSGSYYELRVEDISWLAGPSLLEHLDT 153 (790)
Q Consensus 74 ~~L~Ls~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~ls~~~~~~~~~~~~~l~~l~~L~~L~l 153 (790)
+.++.+++.+. .+|..+. +++++|++++|.+++..+..+.++++|++|++++|.+.....
T Consensus 7 ~~~~cs~~~L~--~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---------------- 66 (680)
T 1ziw_A 7 EVADCSHLKLT--QVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEP---------------- 66 (680)
T ss_dssp SEEECCSSCCS--SCCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCT----------------
T ss_pred CeeECCCCCcc--ccccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCH----------------
Confidence 56888888887 5677664 789999999999988666678999999999999886543211
Q ss_pred CCCCCCCCchhHHhhCCCCCCCEEEccCccccccCcccCcCCCCCCEEECCCCCCCCCCcchhccCCCCCcEEEccCCcC
Q 047929 154 SDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIF 233 (790)
Q Consensus 154 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L~l~~~~~ 233 (790)
..+.++++|++|++++|.+..+++.+|+++++|++|++++|.+.+ ..|..+..+++|++|++++|.+
T Consensus 67 ------------~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l 133 (680)
T 1ziw_A 67 ------------ELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQK-IKNNPFVKQKNLITLDLSHNGL 133 (680)
T ss_dssp ------------THHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC-CCSCTTTTCTTCCEEECCSSCC
T ss_pred ------------HHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCc-cChhHccccCCCCEEECCCCcc
Confidence 167788999999999999999998899999999999999999865 3346788999999999999999
Q ss_pred CCCCCccCCCCCCCcEEeCCCCcCCcccccccc--CCCCCCEEEccCcccccccCcccccCCCCCCEEEccCCCCCCCcc
Q 047929 234 RGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFS--NFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQDIS 311 (790)
Q Consensus 234 ~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~--~l~~L~~L~l~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 311 (790)
.+..|..+.++++|++|++++|.+.+..+..+. .+++|++|++++|.+.+..+.. +..+++|+.+++.++.+.....
T Consensus 134 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~l~~~~l~~~~~ 212 (680)
T 1ziw_A 134 SSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGC-FHAIGRLFGLFLNNVQLGPSLT 212 (680)
T ss_dssp SCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTG-GGGSSEECEEECTTCCCHHHHH
T ss_pred cccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhh-hhhhhhhhhhhccccccChhhH
Confidence 988888899999999999999999887776554 5689999999999998655554 8899999999999887643221
Q ss_pred hhhhhhhccccCCCCEEEccCCccccccchhhccCCC--CcEEEccCcccCCCCCcCcCCCCCCCEEECcCCcCCCcCCh
Q 047929 312 EILDIISACAAFELESLFLRGCKISGQLTNQLGLFKN--LHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMISE 389 (790)
Q Consensus 312 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~--L~~L~L~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 389 (790)
.. .......++|+.|++++|.+.+..+.++..++. |++|++++|.+.+..+..++.+++|++|++++|.+.+..+.
T Consensus 213 ~~--~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 290 (680)
T 1ziw_A 213 EK--LCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSH 290 (680)
T ss_dssp HH--HHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTT
T ss_pred HH--HHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChh
Confidence 11 111123478999999999999888888887755 99999999999988888999999999999999999876554
Q ss_pred hhhccccccceeecCCCcce---------eecCCCCCCcccceEEEcCCCCCCCCCCcccccCCCCCEEEccCCccCCCc
Q 047929 390 IHFGNLTELAFFYANGNSVN---------FKINSKWVPPFQLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDII 460 (790)
Q Consensus 390 ~~~~~l~~L~~l~l~~~~~~---------~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~ 460 (790)
.+.++++|+.+++.++... ......+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+....
T Consensus 291 -~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~ 369 (680)
T 1ziw_A 291 -SLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRT 369 (680)
T ss_dssp -TTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCE
T ss_pred -hhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhh
Confidence 6889999999999876433 222236778899999999999999988888999999999999999753211
Q ss_pred ccccccccccccCCCccC--CCCCCcEEEccCCcccccCCcCCCCCCCCCEEEccCCcccccCC-ccccCCCCCcEEECc
Q 047929 461 PRWFWNSIYQDTIPDCWM--NWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIP-VPFENCSQLVALDMG 537 (790)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~--~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~l~~l~~L~~L~l~ 537 (790)
. ....+. ..++|+.|++++|++++..+..|..+++|+.|++++|.+.+..+ ..+.++++|++|+++
T Consensus 370 l-----------~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls 438 (680)
T 1ziw_A 370 L-----------TNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLS 438 (680)
T ss_dssp E-----------CTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECC
T ss_pred c-----------chhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecC
Confidence 0 011111 23689999999999998888899999999999999999986554 688999999999999
Q ss_pred CCcccccCchhhhhcCCCCcEEEcCCCccc--ccCCccccCCCCCcEEEccCCcccccCCcchhccccccccCCccccce
Q 047929 538 ENEFVGNIPTWMGERFSRLRILNLRSNKLH--GIFPIQICHLSSLQILDVAYNRLSGSVPKCINNFTAMATIGSHHQVKA 615 (790)
Q Consensus 538 ~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~--~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~~~~~~~~ 615 (790)
+|.+.+..+..+ ..+++|+.|++++|.+. +..|..+..+++|+.|++++|.+++..|..+.++++
T Consensus 439 ~n~l~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~------------ 505 (680)
T 1ziw_A 439 YNKYLQLTRNSF-ALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEK------------ 505 (680)
T ss_dssp SCSEEECCTTTT-TTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT------------
T ss_pred CCCcceeChhhh-hcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccc------------
Confidence 999885555544 47899999999999886 567888999999999999999998766666665554
Q ss_pred eecccccccceeeeeeeeeccchhhhhhcccceeEEEccCccCCCCC--------CcccccCCCCCEEeCCCCcCCcCCC
Q 047929 616 IYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGEI--------PMEVTNLKGLQSLNLSHNSFIGKIP 687 (790)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~--------~~~~~~l~~L~~L~L~~n~l~~~~p 687 (790)
|++|++++|.+.+.. +..+..+++|++|++++|.++...+
T Consensus 506 --------------------------------L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~ 553 (680)
T 1ziw_A 506 --------------------------------LEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPV 553 (680)
T ss_dssp --------------------------------CCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCT
T ss_pred --------------------------------cCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCH
Confidence 468999999987532 1237889999999999999996555
Q ss_pred ccccCCCCCCEEeCcCccCccccCccccCCCCCCEEECcCCcccccCCCCC--cCCccCCccccCC-cccCCC
Q 047929 688 ETIGNMRSIESLDLSGNQISGKIPQSMSSLSFLNHLNLSDNKLVGKIPSST--QLQSFGASSITGN-DLCGAP 757 (790)
Q Consensus 688 ~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~--~~~sl~~l~~~~n-~l~~~~ 757 (790)
..|.++++|++|++++|++++..+..|..+++|+.|++++|++.+..|... .+.+|+.+++.+| -.|+.+
T Consensus 554 ~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~ 626 (680)
T 1ziw_A 554 EVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE 626 (680)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred HHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCc
Confidence 679999999999999999998777788999999999999999998666543 4788999999999 456544
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.6e-51 Score=469.75 Aligned_cols=537 Identities=21% Similarity=0.242 Sum_probs=353.3
Q ss_pred EEcCCCCCCccccccCcCCCCCCEEeCCCCCCCCCCcCccccCCCCCCEEeCCCCcccccCCCCCCCCCCCcEEECcCCc
Q 047929 52 LNLERSELGGKINPALVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHLDLSGSY 131 (790)
Q Consensus 52 L~L~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~ls~~~ 131 (790)
++.++.+++ .+|..+.. ++++|+|++|.+.+. .|..|.++++|++|++++|.+.+..|.+|+++++|++|++++|.
T Consensus 17 ~~c~~~~l~-~iP~~l~~--~l~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~ 92 (606)
T 3t6q_A 17 YNCENLGLN-EIPGTLPN--STECLEFSFNVLPTI-QNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANP 92 (606)
T ss_dssp EECTTSCCS-SCCTTSCT--TCCEEECTTCCCSEE-CTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred EECCCCCcc-cCcCCCCC--cCcEEEccCCccCcC-ChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCc
Confidence 344444554 45554543 678888888887754 46677788888888888888777677778888888888887775
Q ss_pred ccccccCccccCCCCCCcEEECCCCCCCCCchhHHhhCCCCCCCEEEccCccccccCcccCcCCCCCCEEECCCCCCCCC
Q 047929 132 YELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKT 211 (790)
Q Consensus 132 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~ 211 (790)
+..... . .+.++++|++|++++|.+..+.+..+.++++|++|++++|.+...
T Consensus 93 l~~~~~--~--------------------------~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~ 144 (606)
T 3t6q_A 93 LIFMAE--T--------------------------ALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSI 144 (606)
T ss_dssp CSEECT--T--------------------------TTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCC
T ss_pred ccccCh--h--------------------------hhcccccccEeeccccCcccCCcchhccCCcccEEECCCCccccc
Confidence 432211 1 344455555555555555555455555666666666666655443
Q ss_pred CcchhccCCCCCcEEEccCCcCCCCCCccCCCCCCCc--EEeCCCCcCCccccccccCCCCCCEEEccCcccccccCccc
Q 047929 212 SIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLR--YLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIG 289 (790)
Q Consensus 212 ~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~--~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~ 289 (790)
..|..+ .+++|++|++++|.+.+..|..++.+++|+ +|++++|.+.+..+..+.. .+|+.|++++|.. ++..
T Consensus 145 ~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~~~~---~~~~- 218 (606)
T 3t6q_A 145 KLPKGF-PTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDS-AVFQSLNFGGTQN---LLVI- 218 (606)
T ss_dssp CCCTTC-CCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTT-CEEEEEECTTCSC---HHHH-
T ss_pred Cccccc-CCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhh-ccccccccCCchh---HHHH-
Confidence 334433 255666666666655554455555555555 5566666655554444432 3555555555541 1111
Q ss_pred ccCCCCCCEEEccCCCCCC-----CcchhhhhhhccccCCCCEEEccCCccccccchhhccCCCCcEEEccCcccCCCCC
Q 047929 290 LENLTFIKTLDLSFNELGQ-----DISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVSGPLP 364 (790)
Q Consensus 290 l~~l~~L~~L~l~~~~~~~-----~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~~~~ 364 (790)
+..+.+++...+....+.. .....+. .. ...+|+.+++++|.+.+..+..+..+++|++|++++|.+. .+|
T Consensus 219 ~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~--~l-~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp 294 (606)
T 3t6q_A 219 FKGLKNSTIQSLWLGTFEDMDDEDISPAVFE--GL-CEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELP 294 (606)
T ss_dssp HHHTTTCEEEEEECCCCTTSCCCCCCGGGGG--GG-GGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCC
T ss_pred hhhccccchhheechhhccccccccChhHhc--hh-hcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCC
Confidence 2223332222222111110 0011000 00 0114555555555555444444555555555555555554 444
Q ss_pred cCcCCCCCCCEEECcCCcCCCcCChhhhccccccceeecCCCcceeecCCCCCCcccceEEEcCCCCCCCCCCcccccCC
Q 047929 365 PASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNFKINSKWVPPFQLLALRLRSCHLGPHFPSWLHSQK 444 (790)
Q Consensus 365 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 444 (790)
..+..+++|++|++++|.+. +..+..+..++
T Consensus 295 ~~l~~l~~L~~L~l~~n~l~-------------------------------------------------~~~~~~~~~l~ 325 (606)
T 3t6q_A 295 SGLVGLSTLKKLVLSANKFE-------------------------------------------------NLCQISASNFP 325 (606)
T ss_dssp SSCCSCTTCCEEECTTCCCS-------------------------------------------------BGGGGCGGGCT
T ss_pred hhhcccccCCEEECccCCcC-------------------------------------------------cCchhhhhccC
Confidence 44555555555555555443 33334456667
Q ss_pred CCCEEEccCCccCCCcccccccccccccCCCccCCCCCCcEEEccCCcccccC--CcCCCCCCCCCEEEccCCcccccCC
Q 047929 445 HLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSI--PISMGTLTSLRSLNLRSNRLSGIIP 522 (790)
Q Consensus 445 ~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~--~~~~~~l~~L~~L~L~~n~i~~~~~ 522 (790)
+|++|++++|.+.... .+..+..+++|++|++++|.+.+.. +..+..+++|++|++++|++.+..+
T Consensus 326 ~L~~L~l~~n~~~~~~------------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 393 (606)
T 3t6q_A 326 SLTHLSIKGNTKRLEL------------GTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKT 393 (606)
T ss_dssp TCSEEECCSCSSCCBC------------CSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECT
T ss_pred cCCEEECCCCCccccc------------chhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCH
Confidence 7777777777654221 1233567788888888888887654 6678888899999999999888888
Q ss_pred ccccCCCCCcEEECcCCcccccCchhhhhcCCCCcEEEcCCCcccccCCccccCCCCCcEEEccCCcccccC---Ccchh
Q 047929 523 VPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSV---PKCIN 599 (790)
Q Consensus 523 ~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~---p~~l~ 599 (790)
..+..+++|+.|++++|.+.+..+...+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+.. +..+.
T Consensus 394 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 473 (606)
T 3t6q_A 394 EAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQ 473 (606)
T ss_dssp TTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGG
T ss_pred HHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhc
Confidence 888889999999999998887666654557899999999999998888888899999999999999987522 12233
Q ss_pred ccccccccCCccccceeecccccccceeeeeeeeeccchhhhhhcccceeEEEccCccCCCCCCcccccCCCCCEEeCCC
Q 047929 600 NFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSH 679 (790)
Q Consensus 600 ~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 679 (790)
. ++.|+.|++++|.+.+..|..+..+++|++|++++
T Consensus 474 ~--------------------------------------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 509 (606)
T 3t6q_A 474 T--------------------------------------------LGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSH 509 (606)
T ss_dssp G--------------------------------------------CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred c--------------------------------------------CCCccEEECCCCccCccChhhhccccCCCEEECCC
Confidence 3 34567899999999988889999999999999999
Q ss_pred CcCCcCCCccccCCCCCCEEeCcCccCccccCccccCCCCCCEEECcCCcccccCCC
Q 047929 680 NSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLSFLNHLNLSDNKLVGKIPS 736 (790)
Q Consensus 680 n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~ 736 (790)
|++++..|+++..+++| .|++++|++++..|..+..+++|++|++++|++.+..+.
T Consensus 510 N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 565 (606)
T 3t6q_A 510 NRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSN 565 (606)
T ss_dssp SCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGG
T ss_pred CccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCc
Confidence 99999999999999999 999999999988888899999999999999999876653
No 6
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.1e-49 Score=454.61 Aligned_cols=534 Identities=21% Similarity=0.228 Sum_probs=385.6
Q ss_pred EEEcCCCCCCccccccCcCCCCCCEEeCCCCCCCCCCcCccccCCCCCCEEeCCCCcccccCCCCCCCCCCCcEEECcCC
Q 047929 51 ELNLERSELGGKINPALVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHLDLSGS 130 (790)
Q Consensus 51 ~L~L~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~ls~~ 130 (790)
+++.++.+++ .+|..+. +++++|+|++|.+.+. .+..|.++++|++|++++|.+++..|.+|.++++|++|++++|
T Consensus 15 ~~~c~~~~l~-~ip~~~~--~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n 90 (606)
T 3vq2_A 15 TYQCMDQKLS-KVPDDIP--SSTKNIDLSFNPLKIL-KSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN 90 (606)
T ss_dssp EEECTTSCCS-SCCTTSC--TTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred ceEccCCCcc-cCCCCCC--CCcCEEECCCCCcCEe-ChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCC
Confidence 4666777776 5565554 7888899999888855 4557888899999999998888877888888888998888888
Q ss_pred cccccccCccccCCCCCCcEEECCCCCCCCCchhHHhhCCCCCCCEEEccCccccccCcccCcCCCCCCEEECCCCCCCC
Q 047929 131 YYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGK 210 (790)
Q Consensus 131 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~ 210 (790)
.+..... ..+.++++|++|++++|.+...++..++++++|++|++++|.+..
T Consensus 91 ~l~~~~p----------------------------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 142 (606)
T 3vq2_A 91 PIQSFSP----------------------------GSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHS 142 (606)
T ss_dssp CCCCCCT----------------------------TSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCC
T ss_pred cccccCh----------------------------hhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccc
Confidence 6543311 146677777888888888887777778888899999999988876
Q ss_pred CCcchhccCCCCCcEEEccCCcCCCCCCccCCCCCCCc----EEeCCCCcCCccccccccCCCCCCEEEccCcccccccC
Q 047929 211 TSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLR----YLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTIS 286 (790)
Q Consensus 211 ~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~----~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~ 286 (790)
..+|..+..+++|++|++++|.+.+..|..++.+++|+ +|++++|.+.+..+..+... +|+.|++++|.+.+...
T Consensus 143 ~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~ 221 (606)
T 3vq2_A 143 CKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIM 221 (606)
T ss_dssp CCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHH
T ss_pred eechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHH
Confidence 56788888899999999999988877777777766654 78999998887666666554 88999999888764444
Q ss_pred cccccCCCCCCEEEccCCCCCCCc------chhhhhhhccccCCCCEEEc-cCCccccccchhhccCCCCcEEEccCccc
Q 047929 287 SIGLENLTFIKTLDLSFNELGQDI------SEILDIISACAAFELESLFL-RGCKISGQLTNQLGLFKNLHTLALSDNSV 359 (790)
Q Consensus 287 ~~~l~~l~~L~~L~l~~~~~~~~~------~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~~~~l~~l~~L~~L~L~~~~i 359 (790)
...+.+++.|+.+++..+.+.... ..... .... ..++.+.+ ..+.+.+..+. +..+++|+.|++++|.+
T Consensus 222 ~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~--~l~~-l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~ 297 (606)
T 3vq2_A 222 KTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIME--GLCD-VTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSI 297 (606)
T ss_dssp HHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGT--TGGG-SEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCC
T ss_pred HHHhccccccccccccccccccCCcccccChHHhh--hhhh-ccHhheeccccccccccccc-cccCCCCCEEEecCccc
Confidence 444788888888877654432211 01000 0111 13444444 33444444443 55556666666666655
Q ss_pred CCCCCcCcCCCCCCCEEECcCCcCCCcCChhhhccccccceeecCCCcceeecCCCCCCcccceEEEcCCCCCCCCCCcc
Q 047929 360 SGPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNFKINSKWVPPFQLLALRLRSCHLGPHFPSW 439 (790)
Q Consensus 360 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 439 (790)
. .+| .+..+++|++|++++|.+. .+|.
T Consensus 298 ~-~l~-~l~~~~~L~~L~l~~n~l~--------------------------------------------------~lp~- 324 (606)
T 3vq2_A 298 K-YLE-DVPKHFKWQSLSIIRCQLK--------------------------------------------------QFPT- 324 (606)
T ss_dssp C-CCC-CCCTTCCCSEEEEESCCCS--------------------------------------------------SCCC-
T ss_pred h-hhh-hccccccCCEEEcccccCc--------------------------------------------------cccc-
Confidence 4 333 4555555555555555542 2232
Q ss_pred cccCCCCCEEEccCCccCCCcccccccccccccCCCccCCCCCCcEEEccCCccccc--CCcCCCCCCCCCEEEccCCcc
Q 047929 440 LHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGS--IPISMGTLTSLRSLNLRSNRL 517 (790)
Q Consensus 440 ~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~--~~~~~~~l~~L~~L~L~~n~i 517 (790)
+ .+++|++|++++|..... ..+..+++|+.|++++|.+++. .+..+..+++|++|++++|.+
T Consensus 325 ~-~l~~L~~L~l~~n~~~~~---------------~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l 388 (606)
T 3vq2_A 325 L-DLPFLKSLTLTMNKGSIS---------------FKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGA 388 (606)
T ss_dssp C-CCSSCCEEEEESCSSCEE---------------CCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSE
T ss_pred C-CCCccceeeccCCcCccc---------------hhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcc
Confidence 2 456666666666643211 1234667777888887777654 356677778888888888887
Q ss_pred cccCCccccCCCCCcEEECcCCcccccCchhhhhcCCCCcEEEcCCCcccccCCccccCCCCCcEEEccCCccccc-CCc
Q 047929 518 SGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGS-VPK 596 (790)
Q Consensus 518 ~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~-~p~ 596 (790)
.+. +..+..+++|+.|++++|.+.+..|...+..+++|++|++++|++.+..|..+..+++|++|++++|.+.+. +|.
T Consensus 389 ~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 467 (606)
T 3vq2_A 389 IIM-SANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSN 467 (606)
T ss_dssp EEE-CCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECS
T ss_pred ccc-hhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHH
Confidence 754 367777888888888888887666633445788888888888888887888888888899999998888763 565
Q ss_pred chhccccccccCCccccceeecccccccceeeeeeeeeccchhhhhhcccceeEEEccCccCCCCCCcccccCCCCCEEe
Q 047929 597 CINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGEIPMEVTNLKGLQSLN 676 (790)
Q Consensus 597 ~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 676 (790)
.+..+++ |++|++++|.+.+..|..+..+++|++|+
T Consensus 468 ~~~~l~~--------------------------------------------L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 503 (606)
T 3vq2_A 468 VFANTTN--------------------------------------------LTFLDLSKCQLEQISWGVFDTLHRLQLLN 503 (606)
T ss_dssp CCTTCTT--------------------------------------------CCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred hhccCCC--------------------------------------------CCEEECCCCcCCccChhhhcccccCCEEE
Confidence 5555444 46888999998888888889999999999
Q ss_pred CCCCcCCcCCCccccCCCCCCEEeCcCccCccccCccccCCC-CCCEEECcCCcccccCCC
Q 047929 677 LSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLS-FLNHLNLSDNKLVGKIPS 736 (790)
Q Consensus 677 L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~-~L~~L~l~~n~l~~~~p~ 736 (790)
+++|++++..|..|..+++|++|++++|+++ .+|..+..++ +|++|++++|++.+..+.
T Consensus 504 Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~ 563 (606)
T 3vq2_A 504 MSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEH 563 (606)
T ss_dssp CCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred CCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCcc
Confidence 9999999888999999999999999999998 5777788887 599999999999876664
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=5.2e-49 Score=448.98 Aligned_cols=528 Identities=19% Similarity=0.181 Sum_probs=420.3
Q ss_pred CEEeCCCCCCCCCCcCccccCCCCCCEEeCCCCcccccCCCCCCCCCCCcEEECcCCcccccccCccccCCCCCCcEEEC
Q 047929 74 NLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHLDLSGSYYELRVEDISWLAGPSLLEHLDT 153 (790)
Q Consensus 74 ~~L~Ls~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~ls~~~~~~~~~~~~~l~~l~~L~~L~l 153 (790)
+.++.++..+. .+|..+. .++++|++++|.+++..|.+|+++++|++|++++|.+.....
T Consensus 15 ~~~~c~~~~l~--~iP~~l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~---------------- 74 (606)
T 3t6q_A 15 KTYNCENLGLN--EIPGTLP--NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHE---------------- 74 (606)
T ss_dssp TEEECTTSCCS--SCCTTSC--TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECT----------------
T ss_pred ceEECCCCCcc--cCcCCCC--CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeCh----------------
Confidence 36788887777 5677665 479999999999999788899999999999999987543221
Q ss_pred CCCCCCCCchhHHhhCCCCCCCEEEccCccccccCcccCcCCCCCCEEECCCCCCCCCCcchhccCCCCCcEEEccCCcC
Q 047929 154 SDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIF 233 (790)
Q Consensus 154 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L~l~~~~~ 233 (790)
..+.++++|++|++++|.+....+..++++++|++|++++|.+.. ..|..+..+++|++|++++|.+
T Consensus 75 ------------~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~-l~~~~~~~l~~L~~L~L~~n~l 141 (606)
T 3t6q_A 75 ------------DTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISS-IDFIPLHNQKTLESLYLGSNHI 141 (606)
T ss_dssp ------------TTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSC-GGGSCCTTCTTCCEEECCSSCC
T ss_pred ------------hhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCccc-CCcchhccCCcccEEECCCCcc
Confidence 157788999999999999999999999999999999999999865 2356688899999999999999
Q ss_pred CCCCCccCCCCCCCcEEeCCCCcCCccccccccCCCCCC--EEEccCcccccccCcccccCCCCCCEEEccCCCCCCCcc
Q 047929 234 RGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLE--YLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQDIS 311 (790)
Q Consensus 234 ~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~--~L~l~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 311 (790)
.+..+..+..+++|++|++++|.+.+..+..+..+++|+ .|++++|.+.+..+.. + ...+|+.|++++|.. .+
T Consensus 142 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~-~-~~~~L~~L~l~~~~~---~~ 216 (606)
T 3t6q_A 142 SSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGA-F-DSAVFQSLNFGGTQN---LL 216 (606)
T ss_dssp CCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTT-T-TTCEEEEEECTTCSC---HH
T ss_pred cccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhH-h-hhccccccccCCchh---HH
Confidence 874444466699999999999999988888899999999 8999999988655543 3 346789999988752 11
Q ss_pred hhhhhhhccccCC--CCEEEccCCc---cccccchhhccCC--CCcEEEccCcccCCCCCcCcCCCCCCCEEECcCCcCC
Q 047929 312 EILDIISACAAFE--LESLFLRGCK---ISGQLTNQLGLFK--NLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLN 384 (790)
Q Consensus 312 ~~~~~~~~~~~~~--L~~L~l~~~~---~~~~~~~~l~~l~--~L~~L~L~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~ 384 (790)
. ....+.+ ++.+.+.... .....+..+..+. +|++|++++|.+.+..+..++.+++|++|++++|.++
T Consensus 217 ~-----~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 291 (606)
T 3t6q_A 217 V-----IFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS 291 (606)
T ss_dssp H-----HHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS
T ss_pred H-----HhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC
Confidence 1 1122222 3333332221 1111122232222 6777777777777666666777777777777777654
Q ss_pred CcCChhhhccccccceeecCCCcceeecCCCCCCcccceEEEcCCCCCCCCCCcccccCCCCCEEEccCCccCCCccccc
Q 047929 385 GMISEIHFGNLTELAFFYANGNSVNFKINSKWVPPFQLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWF 464 (790)
Q Consensus 385 ~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~ 464 (790)
. +|..+..+++|++|++++|.+.+..+
T Consensus 292 ~--------------------------------------------------lp~~l~~l~~L~~L~l~~n~l~~~~~--- 318 (606)
T 3t6q_A 292 E--------------------------------------------------LPSGLVGLSTLKKLVLSANKFENLCQ--- 318 (606)
T ss_dssp C--------------------------------------------------CCSSCCSCTTCCEEECTTCCCSBGGG---
T ss_pred C--------------------------------------------------CChhhcccccCCEEECccCCcCcCch---
Confidence 2 33446678899999999999876543
Q ss_pred ccccccccCCCccCCCCCCcEEEccCCcccccCCc-CCCCCCCCCEEEccCCcccccC--CccccCCCCCcEEECcCCcc
Q 047929 465 WNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPI-SMGTLTSLRSLNLRSNRLSGII--PVPFENCSQLVALDMGENEF 541 (790)
Q Consensus 465 ~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~l~~L~~L~L~~n~i~~~~--~~~l~~l~~L~~L~l~~n~~ 541 (790)
..+..+++|++|++++|.+.+.++. .+..+++|++|++++|.+.+.. +..+..+++|++|++++|.+
T Consensus 319 ----------~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l 388 (606)
T 3t6q_A 319 ----------ISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEP 388 (606)
T ss_dssp ----------GCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSC
T ss_pred ----------hhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcC
Confidence 3456789999999999998865554 4889999999999999998776 77899999999999999999
Q ss_pred cccCchhhhhcCCCCcEEEcCCCcccccCCcc-ccCCCCCcEEEccCCcccccCCcchhccccccccCCccccceeeccc
Q 047929 542 VGNIPTWMGERFSRLRILNLRSNKLHGIFPIQ-ICHLSSLQILDVAYNRLSGSVPKCINNFTAMATIGSHHQVKAIYHAS 620 (790)
Q Consensus 542 ~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~-~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~ 620 (790)
.+..|..+ ..+++|++|++++|++.+..+.. +..+++|+.|++++|.+.+..|..+..+++
T Consensus 389 ~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~----------------- 450 (606)
T 3t6q_A 389 LSLKTEAF-KECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPA----------------- 450 (606)
T ss_dssp EEECTTTT-TTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTT-----------------
T ss_pred CcCCHHHh-cCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCC-----------------
Confidence 87666665 47899999999999998765544 889999999999999998877777666554
Q ss_pred ccccceeeeeeeeeccchhhhhhcccceeEEEccCccCCC---CCCcccccCCCCCEEeCCCCcCCcCCCccccCCCCCC
Q 047929 621 FENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSG---EIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIE 697 (790)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~---~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 697 (790)
|++|++++|.+.+ ..+..+..+++|++|++++|.+++..|.+|..+++|+
T Consensus 451 ---------------------------L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 503 (606)
T 3t6q_A 451 ---------------------------LQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMN 503 (606)
T ss_dssp ---------------------------CCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred ---------------------------CCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCC
Confidence 4689999999976 2335689999999999999999998899999999999
Q ss_pred EEeCcCccCccccCccccCCCCCCEEECcCCcccccCCCC-CcCCccCCccccCCcc
Q 047929 698 SLDLSGNQISGKIPQSMSSLSFLNHLNLSDNKLVGKIPSS-TQLQSFGASSITGNDL 753 (790)
Q Consensus 698 ~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~-~~~~sl~~l~~~~n~l 753 (790)
+|++++|++.+..|..+..+++| .|++++|++.+.+|.. ..+.+|+.+++.+|++
T Consensus 504 ~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 559 (606)
T 3t6q_A 504 HVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPL 559 (606)
T ss_dssp EEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCE
T ss_pred EEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCc
Confidence 99999999999999999999999 9999999999877765 4578899999999965
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=3.7e-47 Score=433.69 Aligned_cols=533 Identities=21% Similarity=0.170 Sum_probs=418.3
Q ss_pred CcEEECCCCCCCCCchhHHhhCCCCCCCEEEccCccccccCcccCcCCCCCCEEECCCCCCCCCCcchhccCCCCCcEEE
Q 047929 148 LEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLD 227 (790)
Q Consensus 148 L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L~ 227 (790)
-++++.++..+...+. .+ .+++++|++++|.+..+.+..|.++++|++|++++|.+.+ ..|..+..+++|++|+
T Consensus 13 ~~~~~c~~~~l~~ip~---~~--~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-i~~~~~~~l~~L~~L~ 86 (606)
T 3vq2_A 13 NITYQCMDQKLSKVPD---DI--PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIET-IEDKAWHGLHHLSNLI 86 (606)
T ss_dssp TTEEECTTSCCSSCCT---TS--CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCE-ECTTTTTTCTTCCEEE
T ss_pred CCceEccCCCcccCCC---CC--CCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccc-cCHHHhhchhhcCEeE
Confidence 3578888888887754 22 2789999999999999999999999999999999999865 3466788999999999
Q ss_pred ccCCcCCCCCCccCCCCCCCcEEeCCCCcCCccccccccCCCCCCEEEccCccccc-ccCcccccCCCCCCEEEccCCCC
Q 047929 228 LSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQG-TISSIGLENLTFIKTLDLSFNEL 306 (790)
Q Consensus 228 l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~-~~~~~~l~~l~~L~~L~l~~~~~ 306 (790)
+++|.+.+..|..|+++++|++|++++|.+.+..+..++.+++|++|++++|.+.+ .+|.. +.++++|++|++++|.+
T Consensus 87 Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~-~~~l~~L~~L~Ls~n~l 165 (606)
T 3vq2_A 87 LTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAY-FSNLTNLVHVDLSYNYI 165 (606)
T ss_dssp CTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGG-GGTCTTCCEEECCSSCC
T ss_pred CCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHh-HhhcCCCCEEEccCCcc
Confidence 99999998889999999999999999999998887889999999999999999875 45655 89999999999999998
Q ss_pred CCCcchhhhhhhccccCC-CCEEEccCCccccccchhhccCCCCcEEEccCcccC-CCCCcCcCCCCCCCEEECcCCcCC
Q 047929 307 GQDISEILDIISACAAFE-LESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVS-GPLPPASGELSSLTYLDLSNNNLN 384 (790)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~-~~~~~~~~~l~~L~~L~l~~n~~~ 384 (790)
....+..+. ....++. +.++++++|.+....+..+... +|++|++++|.+. +..|..++.++.++.+++..+.+.
T Consensus 166 ~~~~~~~~~--~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~ 242 (606)
T 3vq2_A 166 QTITVNDLQ--FLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFK 242 (606)
T ss_dssp CEECTTTTH--HHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCT
T ss_pred eecChhhhh--hhhccccccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccc
Confidence 876655222 1122222 5589999999987666655554 8999999999876 345667788888888887654433
Q ss_pred Cc-----CChhhhccccc--cceeec-CCCcceeecCCCCCCcccceEEEcCCCCCCCCCCcccccCCCCCEEEccCCcc
Q 047929 385 GM-----ISEIHFGNLTE--LAFFYA-NGNSVNFKINSKWVPPFQLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRI 456 (790)
Q Consensus 385 ~~-----~~~~~~~~l~~--L~~l~l-~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i 456 (790)
.. .....+.++.. ++.+.+ ..+.+....+. +..+++|+.++++++.+.. ++ .+..+++|++|++++|.+
T Consensus 243 ~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~-l~-~l~~~~~L~~L~l~~n~l 319 (606)
T 3vq2_A 243 DERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKY-LE-DVPKHFKWQSLSIIRCQL 319 (606)
T ss_dssp TSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCC-CC-CCCTTCCCSEEEEESCCC
T ss_pred cCCcccccChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEEecCccchh-hh-hccccccCCEEEcccccC
Confidence 21 11222333333 333444 44445544544 7778888888888888754 44 677888888888888887
Q ss_pred CCCcccccccccccccCCCccCCCCCCcEEEccCCcccccCCcCCCCCCCCCEEEccCCcccccC--CccccCCCCCcEE
Q 047929 457 SDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGII--PVPFENCSQLVAL 534 (790)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~--~~~l~~l~~L~~L 534 (790)
.. +| .+ .+++|+.|++++|...+.. .+..+++|++|++++|.+++.. +..+..+++|++|
T Consensus 320 ~~--------------lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L 381 (606)
T 3vq2_A 320 KQ--------------FP-TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHL 381 (606)
T ss_dssp SS--------------CC-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEE
T ss_pred cc--------------cc-cC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEe
Confidence 43 23 23 6788888888888655433 4667888888888888887663 6777888888888
Q ss_pred ECcCCcccccCchhhhhcCCCCcEEEcCCCcccccCC-ccccCCCCCcEEEccCCcccccCCcchhccccccccCCcccc
Q 047929 535 DMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFP-IQICHLSSLQILDVAYNRLSGSVPKCINNFTAMATIGSHHQV 613 (790)
Q Consensus 535 ~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~-~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~~~~~~ 613 (790)
++++|.+.+ +|..+ ..+++|++|++++|++.+..+ ..+..+++|+.|++++|.+.+..|..+.++++
T Consensus 382 ~L~~n~l~~-~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~---------- 449 (606)
T 3vq2_A 382 DLSFNGAII-MSANF-MGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTS---------- 449 (606)
T ss_dssp ECCSCSEEE-ECCCC-TTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTT----------
T ss_pred ECCCCcccc-chhhc-cCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCC----------
Confidence 888888773 55444 367888888888888887766 56788888888888888888777776665554
Q ss_pred ceeecccccccceeeeeeeeeccchhhhhhcccceeEEEccCccCCC-CCCcccccCCCCCEEeCCCCcCCcCCCccccC
Q 047929 614 KAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSG-EIPMEVTNLKGLQSLNLSHNSFIGKIPETIGN 692 (790)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~ 692 (790)
|++|++++|.+.+ .+|..+..+++|++|++++|.+++..|..|..
T Consensus 450 ----------------------------------L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 495 (606)
T 3vq2_A 450 ----------------------------------LNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDT 495 (606)
T ss_dssp ----------------------------------CCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTT
T ss_pred ----------------------------------CCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcc
Confidence 5689999999987 47888999999999999999999999999999
Q ss_pred CCCCCEEeCcCccCccccCccccCCCCCCEEECcCCcccccCCCC-CcC-CccCCccccCCcc-cCCCC
Q 047929 693 MRSIESLDLSGNQISGKIPQSMSSLSFLNHLNLSDNKLVGKIPSS-TQL-QSFGASSITGNDL-CGAPL 758 (790)
Q Consensus 693 l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~-~~~-~sl~~l~~~~n~l-~~~~~ 758 (790)
+++|++|++++|++.+..|..+..+++|++|++++|++. .+|.. ..+ .+|+.+++.+|++ |+.+.
T Consensus 496 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~ 563 (606)
T 3vq2_A 496 LHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEH 563 (606)
T ss_dssp CTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred cccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCcc
Confidence 999999999999999988999999999999999999998 46554 334 4699999999954 65554
No 9
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=3.1e-46 Score=439.66 Aligned_cols=541 Identities=21% Similarity=0.187 Sum_probs=330.2
Q ss_pred EEcCCCCCCccccccCcCCCCCCEEeCCCCCCCCCCcCccccCCCCCCEEeCCCCcccccC-CCCCCCCCCCcEEECcCC
Q 047929 52 LNLERSELGGKINPALVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWI-PHQLGNLSNLMHLDLSGS 130 (790)
Q Consensus 52 L~L~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~l-p~~l~~l~~L~~L~ls~~ 130 (790)
.+.++++++ .+|. -.++|++|+|++|.+.+. .|..|.++++|++|++++|...+.+ |.+|.++++|++|++++|
T Consensus 9 ~dcs~~~L~-~vP~---lp~~l~~LdLs~N~i~~i-~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N 83 (844)
T 3j0a_A 9 AFYRFCNLT-QVPQ---VLNTTERLLLSFNYIRTV-TASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS 83 (844)
T ss_dssp EEESCCCSS-CCCS---SCTTCCEEEEESCCCCEE-CSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC
T ss_pred EEccCCCCC-CCCC---CCCCcCEEECCCCcCCcc-ChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC
Confidence 344455555 3333 345677777777777654 4666777777777777777444333 566677777777777666
Q ss_pred cccccccCccccCCCCCCcEEECCCCCCCCCchhHHhhCCCCCCCEEEccCccccccCc--ccCcCCCCCCEEECCCCCC
Q 047929 131 YYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAP--LASANFSSLNALDLSGNLF 208 (790)
Q Consensus 131 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~--~~l~~l~~L~~L~L~~~~l 208 (790)
.+..... ..+.++++|++|++++|.+....+ ..+.++++|++|++++|.+
T Consensus 84 ~l~~~~p----------------------------~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l 135 (844)
T 3j0a_A 84 KIYFLHP----------------------------DAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQI 135 (844)
T ss_dssp CCCEECT----------------------------TSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCC
T ss_pred cCcccCH----------------------------hHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcc
Confidence 4332111 134555566666666666554322 2355666666666666655
Q ss_pred CCCCcchhccCCCCCcEEEccCCcCCCCCCccCCCC--CCCcEEeCCCCcCCccccccccCCCC------CCEEEccCcc
Q 047929 209 GKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNL--TSLRYLDLSYNQFNSTISDCFSNFDD------LEYLSLGYNR 280 (790)
Q Consensus 209 ~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l--~~L~~L~l~~~~~~~~~~~~l~~l~~------L~~L~l~~~~ 280 (790)
.+...+..+..+++|++|++++|.+.+..+..+..+ ++|+.|++++|.+.+..+..+..+++ |+.|++++|.
T Consensus 136 ~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~ 215 (844)
T 3j0a_A 136 RSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNG 215 (844)
T ss_dssp CCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCC
T ss_pred cccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCc
Confidence 443333445556666666666665555555555544 55666666655555544444433333 5555555554
Q ss_pred cccccCccccc--CCCCCCEEEccCCCCCCCcchhhhhhhccccCCCCEEEccCCccccccchhhccC--CCCcEEEccC
Q 047929 281 LQGTISSIGLE--NLTFIKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLF--KNLHTLALSD 356 (790)
Q Consensus 281 l~~~~~~~~l~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l--~~L~~L~L~~ 356 (790)
+.+..+..... ....++.+.+..+..... ...+.+.......+..+ ++|+.|++++
T Consensus 216 l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~--------------------~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~ 275 (844)
T 3j0a_A 216 WTVDITGNFSNAISKSQAFSLILAHHIMGAG--------------------FGFHNIKDPDQNTFAGLARSSVRHLDLSH 275 (844)
T ss_dssp SSTTTTSGGGGTSCSCCBSEEECCSSCCBCS--------------------SSCSSSTTGGGTTTTTTTTSCCCEEECTT
T ss_pred CchhHHHHHHhhcCcccccceeccccccccc--------------------ccccccCCCChhhhhccccCCccEEECCC
Confidence 44333322111 112334444332211100 00111111112222222 4455555555
Q ss_pred cccCCCCCcCcCCCCCCCEEECcCCcCCCcCChhhhccccccceeecCCCcceeecCCCCCCcccceEEEcCCCCCCCCC
Q 047929 357 NSVSGPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNFKINSKWVPPFQLLALRLRSCHLGPHF 436 (790)
Q Consensus 357 ~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 436 (790)
|.+.+..+..++.+++|+.|++++|.+.+. .+..+..+++|+.|++++|.+.+..
T Consensus 276 n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~-------------------------~~~~~~~l~~L~~L~Ls~N~l~~~~ 330 (844)
T 3j0a_A 276 GFVFSLNSRVFETLKDLKVLNLAYNKINKI-------------------------ADEAFYGLDNLQVLNLSYNLLGELY 330 (844)
T ss_dssp CCCCEECSCCSSSCCCCCEEEEESCCCCEE-------------------------CTTTTTTCSSCCEEEEESCCCSCCC
T ss_pred CcccccChhhhhcCCCCCEEECCCCcCCCC-------------------------ChHHhcCCCCCCEEECCCCCCCccC
Confidence 555544455555555555555555554433 2333344455555556666665566
Q ss_pred CcccccCCCCCEEEccCCccCCCcccccccccccccCCCccCCCCCCcEEEccCCcccccCCcCCCCCCCCCEEEccCCc
Q 047929 437 PSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNR 516 (790)
Q Consensus 437 ~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~ 516 (790)
+..+..+++|++|++++|.+..+.+ ..+..+++|+.|++++|.+++. ..+++|+.|++++|+
T Consensus 331 ~~~~~~l~~L~~L~L~~N~i~~~~~-------------~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N~ 392 (844)
T 3j0a_A 331 SSNFYGLPKVAYIDLQKNHIAIIQD-------------QTFKFLEKLQTLDLRDNALTTI-----HFIPSIPDIFLSGNK 392 (844)
T ss_dssp SCSCSSCTTCCEEECCSCCCCCCCS-------------SCSCSCCCCCEEEEETCCSCCC-----SSCCSCSEEEEESCC
T ss_pred HHHhcCCCCCCEEECCCCCCCccCh-------------hhhcCCCCCCEEECCCCCCCcc-----cCCCCcchhccCCCC
Confidence 6667778888888888888765432 3456778888888888887732 236788888888888
Q ss_pred ccccCCccccCCCCCcEEECcCCcccccCchhhhhcCCCCcEEEcCCCcccccCCc-cccCCCCCcEEEccCCcccccCC
Q 047929 517 LSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPI-QICHLSSLQILDVAYNRLSGSVP 595 (790)
Q Consensus 517 i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~-~~~~l~~L~~L~ls~n~l~~~~p 595 (790)
++.. |.. ..+++.|++++|.+.+.-.......+++|++|++++|++++..+. .+..+++|+.|++++|.+....+
T Consensus 393 l~~l-~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~ 468 (844)
T 3j0a_A 393 LVTL-PKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWE 468 (844)
T ss_dssp CCCC-CCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCC
T ss_pred cccc-ccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccc
Confidence 8744 222 467888999999887543333344789999999999998865433 35567899999999998874332
Q ss_pred cchhccccccccCCccccceeecccccccceeeeeeeeeccchhhhhhcccceeEEEccCccCCCCCCcccccCCCCCEE
Q 047929 596 KCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGEIPMEVTNLKGLQSL 675 (790)
Q Consensus 596 ~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 675 (790)
.... ......++.|+.|+|++|.+++..|..+..+++|++|
T Consensus 469 ~~~~---------------------------------------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 509 (844)
T 3j0a_A 469 TELC---------------------------------------WDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGL 509 (844)
T ss_dssp SCCC---------------------------------------SSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEE
T ss_pred cccc---------------------------------------hhhhcCcccccEEECCCCcccccChhHccchhhhhee
Confidence 1100 0001124557789999999998888889999999999
Q ss_pred eCCCCcCCcCCCccccCCCCCCEEeCcCccCccccCccccCCCCCCEEECcCCcccccCCC
Q 047929 676 NLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLSFLNHLNLSDNKLVGKIPS 736 (790)
Q Consensus 676 ~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~ 736 (790)
+|++|++++..|..+. ++|+.|++++|++++..|..+ .+|+.|++++|++....+.
T Consensus 510 ~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~---~~L~~l~l~~Np~~C~c~~ 565 (844)
T 3j0a_A 510 SLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVF---VSLSVLDITHNKFICECEL 565 (844)
T ss_dssp EEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCC---SSCCEEEEEEECCCCSSSC
T ss_pred ECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHh---CCcCEEEecCCCccccccc
Confidence 9999999977777666 899999999999999888776 5889999999999876653
No 10
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=8.4e-48 Score=437.60 Aligned_cols=109 Identities=18% Similarity=0.221 Sum_probs=81.1
Q ss_pred HHHHHHHHHHhhcCCCC-CC-------CCCCCCCCCCCccc---CceeecCCCCcEEEEEcCCCCCCccccccCcCCCCC
Q 047929 5 ESERVALIKLKQDFKDP-SN-------HLASWIGDVDCCEW---GGVVCNNITGHVLELNLERSELGGKINPALVDLKHL 73 (790)
Q Consensus 5 ~~~~~~~~~~~~~~~~~-~~-------~~~~w~~~~~~~~~---~~~~c~~~~~~v~~L~L~~~~~~~~~~~~l~~l~~L 73 (790)
..|+.||.+++++..++ |. ...+|..++++|.| .||.|+. .+||+.|+|+++.+.|.+|++++++++|
T Consensus 29 ~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~-~~~V~~L~L~~~~l~g~lp~~l~~L~~L 107 (636)
T 4eco_A 29 IKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNS-NGRVTGLSLEGFGASGRVPDAIGQLTEL 107 (636)
T ss_dssp HHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCGGGTTCCTTEEECT-TCCEEEEECTTSCCEEEECGGGGGCTTC
T ss_pred HHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCcccccCCCCeEEcC-CCCEEEEEecCcccCCcCChHHhcCccc
Confidence 36899999999998533 33 34589877999999 9999975 4899999999999999999999999999
Q ss_pred CEEeCCCCCCCCC-----------CcCccccCCCCCCEEeCCCCcccccCCCCCC
Q 047929 74 NLLDLSGNDFQGI-----------QIPEYIGSMDNLRYLNLSGAGFAGWIPHQLG 117 (790)
Q Consensus 74 ~~L~Ls~~~~~~~-----------~l~~~~~~l~~L~~L~Ls~~~~~~~lp~~l~ 117 (790)
++|+|++|.+... .+|... +.+|+ ++++++.+.+..|..+.
T Consensus 108 ~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~~~ 159 (636)
T 4eco_A 108 EVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPREDFS 159 (636)
T ss_dssp CEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGGSC
T ss_pred eEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhhHH
Confidence 9999999975211 123322 34455 66666655554554443
No 11
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.8e-45 Score=416.96 Aligned_cols=501 Identities=20% Similarity=0.212 Sum_probs=307.6
Q ss_pred CCCCEEeCCCCCCCCCCcCccccCCCCCCEEeCCCCcccccCCCCCCCCCCCcEEECcCCcccccccCccccCCCCCCcE
Q 047929 71 KHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHLDLSGSYYELRVEDISWLAGPSLLEH 150 (790)
Q Consensus 71 ~~L~~L~Ls~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~ls~~~~~~~~~~~~~l~~l~~L~~ 150 (790)
+++++|++++|.+.+. .+..|.++++|++|++++|++++..|.+++++++|++|++++|.+...+..
T Consensus 28 ~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~------------ 94 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG------------ 94 (570)
T ss_dssp SSCCEEECCSCCCCEE-CTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTT------------
T ss_pred ccccEEEccCCccCcc-ChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHh------------
Confidence 4677777777777654 345667777777777777777765566677777777777776654322110
Q ss_pred EECCCCCCCCCchhHHhhCCCCCCCEEEccCccccccCcccCcCCCCCCEEECCCCCCCCCCcchhccCCCCCcEEEccC
Q 047929 151 LDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSS 230 (790)
Q Consensus 151 L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L~l~~ 230 (790)
.+.++++|++|++++|.+..++...++++++|++|++++|.+....+|..+..+++|++|++++
T Consensus 95 ----------------~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~ 158 (570)
T 2z63_A 95 ----------------AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 158 (570)
T ss_dssp ----------------TTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTT
T ss_pred ----------------hhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcC
Confidence 3455566666666666666666656777777777777777775545677777777777777777
Q ss_pred CcCCCCCCccCCCCCCC----cEEeCCCCcCCccccccccCCCCCCEEEccCcccccccCcccccCCCCCCEEEccCCCC
Q 047929 231 NIFRGPIPDGFKNLTSL----RYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNEL 306 (790)
Q Consensus 231 ~~~~~~~p~~~~~l~~L----~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~ 306 (790)
|.+.+..+..++.+++| ++|++++|.+.+..+..+... +|+.|++++|..........+..++.++...+....+
T Consensus 159 n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~ 237 (570)
T 2z63_A 159 NKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEF 237 (570)
T ss_dssp SCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEEC
T ss_pred CccceecHHHccchhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccc
Confidence 77776666666666666 677777777776666666554 6777777666432211112244555555544432211
Q ss_pred CCCcchhhhhhhccccCCCCEEEccCCccccccchhhccCC--CCcEEEccCc-ccCCCCCcCcCCCCCCCEEECcCCcC
Q 047929 307 GQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFK--NLHTLALSDN-SVSGPLPPASGELSSLTYLDLSNNNL 383 (790)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~--~L~~L~L~~~-~i~~~~~~~~~~l~~L~~L~l~~n~~ 383 (790)
... ..++. .....+..++ .++.+++.++ .+.+..+..+..+++|+.|++++|.+
T Consensus 238 ~~~-------------~~l~~----------~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l 294 (570)
T 2z63_A 238 RNE-------------GNLEK----------FDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTI 294 (570)
T ss_dssp CCC-------------SSCEE----------CCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEE
T ss_pred cCc-------------hhhhh----------cchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccc
Confidence 110 00000 0001111111 2344444444 34444444455555555555555443
Q ss_pred CCcCChhhhccccccceeecCCCcceeecCCCCCCcccceEEEcCCCCCCCCCCcccccCCCCCEEEccCCccCCCcccc
Q 047929 384 NGMISEIHFGNLTELAFFYANGNSVNFKINSKWVPPFQLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRW 463 (790)
Q Consensus 384 ~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~ 463 (790)
.+ +|.++..+ +|++|++++|.+..++.
T Consensus 295 ~~--------------------------------------------------l~~~~~~~-~L~~L~l~~n~~~~l~~-- 321 (570)
T 2z63_A 295 ER--------------------------------------------------VKDFSYNF-GWQHLELVNCKFGQFPT-- 321 (570)
T ss_dssp CS--------------------------------------------------CCBCCSCC-CCSEEEEESCBCSSCCB--
T ss_pred hh--------------------------------------------------hhhhhccC-CccEEeeccCcccccCc--
Confidence 32 11122233 44444444444432211
Q ss_pred cccccccccCCCccCCCCCCcEEEccCCcccccCCcCCCCCCCCCEEEccCCcccccC--CccccCCCCCcEEECcCCcc
Q 047929 464 FWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGII--PVPFENCSQLVALDMGENEF 541 (790)
Q Consensus 464 ~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~--~~~l~~l~~L~~L~l~~n~~ 541 (790)
..+++|+.|++++|.+.+..+. ..+++|++|++++|.+++.. +..+..+++|++|++++|.+
T Consensus 322 --------------~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l 385 (570)
T 2z63_A 322 --------------LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGV 385 (570)
T ss_dssp --------------CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSE
T ss_pred --------------ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcc
Confidence 1334555555555555543332 44566666666666655443 34555666666666666666
Q ss_pred cccCchhhhhcCCCCcEEEcCCCcccccCC-ccccCCCCCcEEEccCCcccccCCcchhccccccccCCccccceeeccc
Q 047929 542 VGNIPTWMGERFSRLRILNLRSNKLHGIFP-IQICHLSSLQILDVAYNRLSGSVPKCINNFTAMATIGSHHQVKAIYHAS 620 (790)
Q Consensus 542 ~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~-~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~ 620 (790)
.+. +..+ ..+++|++|++++|.+.+..+ ..+..+++|+.|++++|.+.+..|..+.++++
T Consensus 386 ~~~-~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~----------------- 446 (570)
T 2z63_A 386 ITM-SSNF-LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS----------------- 446 (570)
T ss_dssp EEE-EEEE-ETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTT-----------------
T ss_pred ccc-cccc-cccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCc-----------------
Confidence 532 2222 356667777777776665444 34666777777777777776666555544443
Q ss_pred ccccceeeeeeeeeccchhhhhhcccceeEEEccCccCC-CCCCcccccCCCCCEEeCCCCcCCcCCCccccCCCCCCEE
Q 047929 621 FENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFS-GEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESL 699 (790)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 699 (790)
|++|++++|.+. +.+|..+..+++|++|++++|.+++..|.+|..+++|++|
T Consensus 447 ---------------------------L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 499 (570)
T 2z63_A 447 ---------------------------LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 499 (570)
T ss_dssp ---------------------------CCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred ---------------------------CcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEE
Confidence 346777777775 4677888899999999999999998889999999999999
Q ss_pred eCcCccCccccCccccCCCCCCEEECcCCcccccCCCCCc
Q 047929 700 DLSGNQISGKIPQSMSSLSFLNHLNLSDNKLVGKIPSSTQ 739 (790)
Q Consensus 700 ~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~ 739 (790)
++++|++++..|..+..+++|+.|++++|++.+.+|....
T Consensus 500 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~ 539 (570)
T 2z63_A 500 NMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDY 539 (570)
T ss_dssp ECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHH
T ss_pred eCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcchHH
Confidence 9999999988888899999999999999999998887543
No 12
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=4.1e-45 Score=430.04 Aligned_cols=511 Identities=20% Similarity=0.205 Sum_probs=400.6
Q ss_pred CCCCCCEEEccCccccccCcccCcCCCCCCEEECCCCCCCCCCc-chhccCCCCCcEEEccCCcCCCCCCccCCCCCCCc
Q 047929 170 SLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSI-PSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLR 248 (790)
Q Consensus 170 ~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~l-p~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~ 248 (790)
-.+++++|++++|.+..+.+..|.++++|++|++++|.... .+ |..+..+++|++|++++|.+.+..|.+|.++++|+
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~-~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 100 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPL-TIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLF 100 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCC-EECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCC
T ss_pred CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCcc-ccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccC
Confidence 34688999999999999888899999999999999986544 34 77788899999999999999888888999999999
Q ss_pred EEeCCCCcCCcccccc--ccCCCCCCEEEccCcccccccCcccccCCCCCCEEEccCCCCCCCcchhhhhhhcccc--CC
Q 047929 249 YLDLSYNQFNSTISDC--FSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQDISEILDIISACAA--FE 324 (790)
Q Consensus 249 ~L~l~~~~~~~~~~~~--l~~l~~L~~L~l~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~--~~ 324 (790)
+|++++|.+.+..+.. +..+++|++|++++|.+.+..+...+.++++|++|++++|.+....+..+ ..+ ++
T Consensus 101 ~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l-----~~l~~~~ 175 (844)
T 3j0a_A 101 ELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHEL-----EPLQGKT 175 (844)
T ss_dssp CEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGG-----HHHHHCS
T ss_pred EeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHc-----ccccCCc
Confidence 9999999988755543 88999999999999998866554458899999999999998877665532 223 78
Q ss_pred CCEEEccCCccccccchhhccCCC------CcEEEccCcccCCCCCcCcCC---CCCCCEEECcCCcCCCc--------C
Q 047929 325 LESLFLRGCKISGQLTNQLGLFKN------LHTLALSDNSVSGPLPPASGE---LSSLTYLDLSNNNLNGM--------I 387 (790)
Q Consensus 325 L~~L~l~~~~~~~~~~~~l~~l~~------L~~L~L~~~~i~~~~~~~~~~---l~~L~~L~l~~n~~~~~--------~ 387 (790)
|+.|++++|.+.+..+..+..+++ |+.|++++|.+.+..+..+.. ...++.+.+..+.+... .
T Consensus 176 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~ 255 (844)
T 3j0a_A 176 LSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDP 255 (844)
T ss_dssp SCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTG
T ss_pred cceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCC
Confidence 999999999888777766665554 999999999888777766543 35778888774332111 1
Q ss_pred Chhhhccc--cccceeecCCCcceeecCCCCCCcccceEEEcCCCCCCCCCCcccccCCCCCEEEccCCccCCCcccccc
Q 047929 388 SEIHFGNL--TELAFFYANGNSVNFKINSKWVPPFQLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFW 465 (790)
Q Consensus 388 ~~~~~~~l--~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~ 465 (790)
....|.++ ++|+.++++.|.+....+..+..+++|+.|++++|.+.+..+..|..+++|++|++++|.+..+.
T Consensus 256 ~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~----- 330 (844)
T 3j0a_A 256 DQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELY----- 330 (844)
T ss_dssp GGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCC-----
T ss_pred ChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccC-----
Confidence 11233333 67888888888888777778888888888888888888877888888888888888888876543
Q ss_pred cccccccCCCccCCCCCCcEEEccCCcccccCCcCCCCCCCCCEEEccCCcccccCCccccCCCCCcEEECcCCcccccC
Q 047929 466 NSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNI 545 (790)
Q Consensus 466 ~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~ 545 (790)
+..+..+++|+.|++++|.+....+..|..+++|+.|++++|.++.+ ..+++|+.|++++|.+. .+
T Consensus 331 --------~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N~l~-~l 396 (844)
T 3j0a_A 331 --------SSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-----HFIPSIPDIFLSGNKLV-TL 396 (844)
T ss_dssp --------SCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-----SSCCSCSEEEEESCCCC-CC
T ss_pred --------HHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc-----cCCCCcchhccCCCCcc-cc
Confidence 34556778888888888888877777788888888888888888743 23778888888888887 55
Q ss_pred chhhhhcCCCCcEEEcCCCcccccCC-ccccCCCCCcEEEccCCcccccCCcchhccccccccCCccccceeeccccccc
Q 047929 546 PTWMGERFSRLRILNLRSNKLHGIFP-IQICHLSSLQILDVAYNRLSGSVPKCINNFTAMATIGSHHQVKAIYHASFEND 624 (790)
Q Consensus 546 ~~~~~~~~~~L~~L~L~~n~~~~~~~-~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~ 624 (790)
|. ...+++.|++++|++++... ..+..+++|+.|++++|.+++..+...
T Consensus 397 ~~----~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-------------------------- 446 (844)
T 3j0a_A 397 PK----INLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQT-------------------------- 446 (844)
T ss_dssp CC----CCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSS--------------------------
T ss_pred cc----cccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccc--------------------------
Confidence 54 24678888888888875432 224578889999999988875433210
Q ss_pred ceeeeeeeeeccchhhhhhcccceeEEEccCccCC-----CCCCcccccCCCCCEEeCCCCcCCcCCCccccCCCCCCEE
Q 047929 625 YIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFS-----GEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESL 699 (790)
Q Consensus 625 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~-----~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 699 (790)
...++.|+.|++++|.+. +..+..+..+++|++|+|++|.+++..|..|.++++|+.|
T Consensus 447 -----------------~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 509 (844)
T 3j0a_A 447 -----------------PSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGL 509 (844)
T ss_dssp -----------------SCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEE
T ss_pred -----------------cccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhhee
Confidence 011345678999999987 3445668899999999999999998889999999999999
Q ss_pred eCcCccCccccCccccCCCCCCEEECcCCcccccCCCCCcCCccCCccccCC-cccCC
Q 047929 700 DLSGNQISGKIPQSMSSLSFLNHLNLSDNKLVGKIPSSTQLQSFGASSITGN-DLCGA 756 (790)
Q Consensus 700 ~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~sl~~l~~~~n-~l~~~ 756 (790)
++++|++++..|..+. ++|+.|++++|++.+.+|.. +.+|+.+++.+| -.|..
T Consensus 510 ~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~--~~~L~~l~l~~Np~~C~c 563 (844)
T 3j0a_A 510 SLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV--FVSLSVLDITHNKFICEC 563 (844)
T ss_dssp EEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC--CSSCCEEEEEEECCCCSS
T ss_pred ECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhH--hCCcCEEEecCCCccccc
Confidence 9999999987777766 89999999999999988865 568999999999 45643
No 13
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=5.7e-46 Score=427.77 Aligned_cols=509 Identities=18% Similarity=0.240 Sum_probs=267.8
Q ss_pred hHHHHHHHHHHhhcCCCCCCCCCCCCCC-----CCC--ccc------------CceeecCCCCcEEEEEcCCCCCCcccc
Q 047929 4 LESERVALIKLKQDFKDPSNHLASWIGD-----VDC--CEW------------GGVVCNNITGHVLELNLERSELGGKIN 64 (790)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~-----~~~--~~~------------~~~~c~~~~~~v~~L~L~~~~~~~~~~ 64 (790)
...|..||++||+++.+| +|... .++ |.| .||.|+. .+||+.|+|+++++.|.+|
T Consensus 267 ~~~d~~ALl~~k~~l~~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~~~L~G~ip 340 (876)
T 4ecn_A 267 YIKDYKALKAIWEALDGK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAGFGAKGRVP 340 (876)
T ss_dssp HHHHHHHHHHHHHHTTGG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTTTCCEEEEC
T ss_pred chHHHHHHHHHHHHcCCC-----CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECccCCCCCcCc
Confidence 457999999999999777 78322 355 999 9999985 6899999999999999999
Q ss_pred ccCcCCCCCCEEeC-CCCCCCCCCcCccccCC-CCCC-----EE---------eC-CCCcccccCCCC---------CCC
Q 047929 65 PALVDLKHLNLLDL-SGNDFQGIQIPEYIGSM-DNLR-----YL---------NL-SGAGFAGWIPHQ---------LGN 118 (790)
Q Consensus 65 ~~l~~l~~L~~L~L-s~~~~~~~~l~~~~~~l-~~L~-----~L---------~L-s~~~~~~~lp~~---------l~~ 118 (790)
++++++++|++|+| ++|.+.+. .|-..... ..+. .+ +. ....+.+.++.. +..
T Consensus 341 ~~l~~L~~L~~LdLss~N~lsG~-~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~~ 419 (876)
T 4ecn_A 341 DAIGQLTELKVLSFGTHSETVSG-RLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKK 419 (876)
T ss_dssp GGGGGCTTCCEEESCCTTHHHHT-TCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCCCC
T ss_pred hHHhccccceEeeeccccccccc-ccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCcccccccc
Confidence 99999999999999 77765533 11100000 0000 00 00 000000000000 000
Q ss_pred CC--CCcEEECcCCcccccccCccccCCCCCCcEEECCCCCCCCCchhHHhhCCCCCCCEEEccCccccccCcccCcCCC
Q 047929 119 LS--NLMHLDLSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLASANFS 196 (790)
Q Consensus 119 l~--~L~~L~ls~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~ 196 (790)
.. .++.+.+.. ..|.+.. .|..+++++
T Consensus 420 ~~~l~l~~l~l~~--------------------------------------------------~~N~L~~-IP~~l~~L~ 448 (876)
T 4ecn_A 420 DSRISLKDTQIGN--------------------------------------------------LTNRITF-ISKAIQRLT 448 (876)
T ss_dssp CCCCCCCTTTTTC--------------------------------------------------CSCEEEE-ECGGGGGCT
T ss_pred ccccchhhceecc--------------------------------------------------ccCcccc-hhHHHhcCC
Confidence 11 111111110 1133333 233455555
Q ss_pred CCCEEECCCCCCCCC----------------Ccchhcc--CCCCCcEEEccCCcCCCCCCccCCCCCCCcEEeCCCCc-C
Q 047929 197 SLNALDLSGNLFGKT----------------SIPSWVF--GLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQ-F 257 (790)
Q Consensus 197 ~L~~L~L~~~~l~~~----------------~lp~~l~--~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~-~ 257 (790)
+|++|++++|.+++. .+|..+. .+++|++|++++|.+.+.+|..|+++++|++|++++|+ +
T Consensus 449 ~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~l 528 (876)
T 4ecn_A 449 KLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGI 528 (876)
T ss_dssp TCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTS
T ss_pred CCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCc
Confidence 555555555555331 1566655 67777777777777666777777777777777777776 6
Q ss_pred Cc-cccccccCC-------CCCCEEEccCcccccccCc-ccccCCCCCCEEEccCCCCCCCcchhhhhhhccccCCCCEE
Q 047929 258 NS-TISDCFSNF-------DDLEYLSLGYNRLQGTISS-IGLENLTFIKTLDLSFNELGQDISEILDIISACAAFELESL 328 (790)
Q Consensus 258 ~~-~~~~~l~~l-------~~L~~L~l~~~~l~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L 328 (790)
++ .+|..+..+ ++|+.|++++|.+. .+|. ..+.++++|+.|++++|
T Consensus 529 sg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N------------------------ 583 (876)
T 4ecn_A 529 SAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHN------------------------ 583 (876)
T ss_dssp CHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTS------------------------
T ss_pred ccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCC------------------------
Confidence 65 455544333 35555555555554 4443 11444444444444444
Q ss_pred EccCCccccccchhhccCCCCcEEEccCcccCCCCCcCcCCCCC-CCEEECcCCcCCCcCChhhhccccccceeecCCCc
Q 047929 329 FLRGCKISGQLTNQLGLFKNLHTLALSDNSVSGPLPPASGELSS-LTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNS 407 (790)
Q Consensus 329 ~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~~~~~~~~~l~~-L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~ 407 (790)
.+. .+| .+..+++|+.|++++|.+. .+|..+..+++ |+.|++++|.+...+.. +..+
T Consensus 584 -----~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~--~~~~------------ 641 (876)
T 4ecn_A 584 -----KVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNI--FNAK------------ 641 (876)
T ss_dssp -----CCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCSCCSC--CCTT------------
T ss_pred -----Ccc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCCcCchh--hhcc------------
Confidence 444 333 4555666666666666666 55555666666 66666666665422110 0000
Q ss_pred ceeecCCCCCCcccceEEEcCCCCCCCCCCcccccCCCCCEEEccCCccCCCcccccccccccccCCCcc--CCCCCCcE
Q 047929 408 VNFKINSKWVPPFQLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCW--MNWPDLRV 485 (790)
Q Consensus 408 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~--~~l~~L~~ 485 (790)
..++|+.|++++|.+.+.+|. ++..+ ...++|+.
T Consensus 642 ----------------------------------~~~~L~~L~Ls~N~l~g~ip~----------l~~~l~~~~~~~L~~ 677 (876)
T 4ecn_A 642 ----------------------------------SVYVMGSVDFSYNKIGSEGRN----------ISCSMDDYKGINAST 677 (876)
T ss_dssp ----------------------------------CSSCEEEEECCSSCTTTTSSS----------CSSCTTTCCCCCEEE
T ss_pred ----------------------------------ccCCCCEEECcCCcCCCcccc----------chhhhccccCCCcCE
Confidence 011233333333333322110 00000 12234555
Q ss_pred EEccCCcccccCCcC-CCCCCCCCEEEccCCcccccCCccccC-------CCCCcEEECcCCcccccCchhhh-hcCCCC
Q 047929 486 LNLGNNKFTGSIPIS-MGTLTSLRSLNLRSNRLSGIIPVPFEN-------CSQLVALDMGENEFVGNIPTWMG-ERFSRL 556 (790)
Q Consensus 486 L~l~~n~~~~~~~~~-~~~l~~L~~L~L~~n~i~~~~~~~l~~-------l~~L~~L~l~~n~~~~~~~~~~~-~~~~~L 556 (790)
|++++|.++ .+|.. +..+++|+.|++++|++..+....+.. +++|+.|++++|.+. .+|..+. ..+++|
T Consensus 678 L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L 755 (876)
T 4ecn_A 678 VTLSYNEIQ-KFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYL 755 (876)
T ss_dssp EECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTC
T ss_pred EEccCCcCC-ccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCc
Confidence 555555555 22322 224555555555555555332222221 224555555555544 4444332 234455
Q ss_pred cEEEcCCCcccccCCccccCCCCCcEEEccCCcccccCCcchhccccccccCCccccceeecccccccceeeeeeeeecc
Q 047929 557 RILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKG 636 (790)
Q Consensus 557 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 636 (790)
+.|++++|++++ +|..+..+++|+.|++++|+
T Consensus 756 ~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~----------------------------------------------- 787 (876)
T 4ecn_A 756 SNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQR----------------------------------------------- 787 (876)
T ss_dssp CEEECCSSCCSS-CCCGGGGCTTCCEEECCCCB-----------------------------------------------
T ss_pred CEEEeCCCCCCc-cchhhhcCCCCCEEECCCCC-----------------------------------------------
Confidence 555555555543 34444445555555554442
Q ss_pred chhhhhhcccceeEEEccCccCCCCCCcccccCCCCCEEeCCCCcCCcCCCccccCCCCCCEEeCcCccCccccCccccC
Q 047929 637 FMVEYNSILNLVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSS 716 (790)
Q Consensus 637 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~ 716 (790)
++++|.+.+.+|..+..+++|++|+|++|.+ +.+|..+. ++|+.|+|++|++....+..+..
T Consensus 788 ---------------~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~ 849 (876)
T 4ecn_A 788 ---------------DAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSVCP 849 (876)
T ss_dssp ---------------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGGHH
T ss_pred ---------------CcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHccc
Confidence 1234566666677777777777777777777 46666554 57777777777776555555544
Q ss_pred CCCCCEEECcCCc
Q 047929 717 LSFLNHLNLSDNK 729 (790)
Q Consensus 717 l~~L~~L~l~~n~ 729 (790)
...+..+.+.+|+
T Consensus 850 ~~~~~~~~L~~n~ 862 (876)
T 4ecn_A 850 YIEAGMYVLLYDK 862 (876)
T ss_dssp HHHTTCCEEECCT
T ss_pred cccchheeecCCC
Confidence 4444444444443
No 14
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=3.8e-44 Score=403.83 Aligned_cols=497 Identities=21% Similarity=0.229 Sum_probs=294.5
Q ss_pred CcccCceeecCCCCcEEEEEcCCCCCCccccccCcCCCCCCEEeCCCCCCCCCCcCccccCCCCCCEEeCCCCcccccCC
Q 047929 34 CCEWGGVVCNNITGHVLELNLERSELGGKINPALVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIP 113 (790)
Q Consensus 34 ~~~~~~~~c~~~~~~v~~L~L~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~lp 113 (790)
.|.|.++ |+ .+++.++ .+|+.+. ++|++|++++|.+.+. .|..+.++++|++|++++|++++..|
T Consensus 3 ~C~~~~~-c~----------~~~~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~i~~~~~ 67 (549)
T 2z81_A 3 SCDASGV-CD----------GRSRSFT-SIPSGLT--AAMKSLDLSFNKITYI-GHGDLRACANLQVLILKSSRINTIEG 67 (549)
T ss_dssp EECTTSE-EE----------CTTSCCS-SCCSCCC--TTCCEEECCSSCCCEE-CSSTTSSCTTCCEEECTTSCCCEECT
T ss_pred cCCCCce-EE----------CCCCccc-cccccCC--CCccEEECcCCccCcc-ChhhhhcCCcccEEECCCCCcCccCh
Confidence 4889887 74 3455555 5565554 7899999999998865 56788899999999999999888777
Q ss_pred CCCCCCCCCcEEECcCCcccccccCccccCCCCCCcEEECCCCCCCCCchhHHhhCCCCCCCEEEccCcccccc-CcccC
Q 047929 114 HQLGNLSNLMHLDLSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHF-APLAS 192 (790)
Q Consensus 114 ~~l~~l~~L~~L~ls~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~l 192 (790)
.++..+++|++|++++|.+...+. ..++++++|++|++++|.+... .+..+
T Consensus 68 ~~~~~l~~L~~L~Ls~n~l~~~~~----------------------------~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 119 (549)
T 2z81_A 68 DAFYSLGSLEHLDLSDNHLSSLSS----------------------------SWFGPLSSLKYLNLMGNPYQTLGVTSLF 119 (549)
T ss_dssp TTTTTCTTCCEEECTTSCCCSCCH----------------------------HHHTTCTTCCEEECTTCCCSSSCSSCSC
T ss_pred hhccccccCCEEECCCCccCccCH----------------------------HHhccCCCCcEEECCCCcccccchhhhh
Confidence 888888888888888775432111 1244444455555544444432 12344
Q ss_pred cCCCCCCEEECCCCCCCCCCcchhccCCCCCcEEEccCCcCCCCCCccCCCCCCCcEEeCCCCcCCccccccccCCCCCC
Q 047929 193 ANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLE 272 (790)
Q Consensus 193 ~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 272 (790)
+++++|++|++++|.+.+ .+| +..|.++++|++|++++|.+.+..+..+..+++|+
T Consensus 120 ~~l~~L~~L~L~~n~~~~-~~~-----------------------~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 175 (549)
T 2z81_A 120 PNLTNLQTLRIGNVETFS-EIR-----------------------RIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIH 175 (549)
T ss_dssp TTCTTCCEEEEEESSSCC-EEC-----------------------TTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEE
T ss_pred hccCCccEEECCCCcccc-ccC-----------------------HhhhhcccccCeeeccCCcccccChhhhhccccCc
Confidence 444555555555444221 222 23344444444444444444444444444444444
Q ss_pred EEEccCcccccccCcccccCCCCCCEEEccCCCCCCCcchhhhhhhccccCCCCEEEccCCccccccch----hhccCCC
Q 047929 273 YLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTN----QLGLFKN 348 (790)
Q Consensus 273 ~L~l~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~----~l~~l~~ 348 (790)
+|+++.|.+. .++...+..+++|+.|++++|.+.+....... .....++|+.|++++|.+.+..+. .+..+++
T Consensus 176 ~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~ 252 (549)
T 2z81_A 176 HLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLP--VDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILE 252 (549)
T ss_dssp EEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCS--SCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTT
T ss_pred eEecccCccc-ccchhhHhhcccccEEEccCCccccccccccc--hhhhhhcccceeccccccchhHHHHHHHHhhhhcc
Confidence 4444444432 22222223344455555555444332100000 111234555555555554433222 2334556
Q ss_pred CcEEEccCcccCCCCC------cCcCCCCCCCEEECcCCcCCCcCChhhhccccccceeecCCCcceeecCCCCCCcccc
Q 047929 349 LHTLALSDNSVSGPLP------PASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNFKINSKWVPPFQL 422 (790)
Q Consensus 349 L~~L~L~~~~i~~~~~------~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L 422 (790)
|+.+++++|.+.+... ..+..+++++.
T Consensus 253 L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~----------------------------------------------- 285 (549)
T 2z81_A 253 LSEVEFDDCTLNGLGDFNPSESDVVSELGKVET----------------------------------------------- 285 (549)
T ss_dssp CCEEEEESCEEECCSCCCCCTTTCCCCCTTCCE-----------------------------------------------
T ss_pred ccccccccccccccccccccchhhhhhhccccc-----------------------------------------------
Confidence 6666666665442210 11122233333
Q ss_pred eEEEcCCCCCCCCCCcccccCCCCCEEEccCCccCCCcccccccccccccCCCccCCCCCCcEEEccCCcccccCCcCC-
Q 047929 423 LALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISM- 501 (790)
Q Consensus 423 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~- 501 (790)
|++.++.+..... ...++..+...++|+.|++++|.+. .+|..+
T Consensus 286 --------------------------L~l~~~~i~~~~~--------~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~ 330 (549)
T 2z81_A 286 --------------------------VTIRRLHIPQFYL--------FYDLSTVYSLLEKVKRITVENSKVF-LVPCSFS 330 (549)
T ss_dssp --------------------------EEEESCBCSCGGG--------SCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHH
T ss_pred --------------------------ccccccccchhhh--------cccchhhhhhcccceEEEeccCccc-cCCHHHH
Confidence 3333332221100 0000011112345666666666655 344333
Q ss_pred CCCCCCCEEEccCCcccccCC---ccccCCCCCcEEECcCCcccccCc-hhhhhcCCCCcEEEcCCCcccccCCccccCC
Q 047929 502 GTLTSLRSLNLRSNRLSGIIP---VPFENCSQLVALDMGENEFVGNIP-TWMGERFSRLRILNLRSNKLHGIFPIQICHL 577 (790)
Q Consensus 502 ~~l~~L~~L~L~~n~i~~~~~---~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l 577 (790)
..+++|++|++++|++++..+ ..+..+++|+.|++++|.+.+..+ ...+..+++|++|++++|+++ .+|..+..+
T Consensus 331 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~ 409 (549)
T 2z81_A 331 QHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWP 409 (549)
T ss_dssp HHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCC
T ss_pred hcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhccc
Confidence 346667777777777665432 235666777777777777753221 123446888888888888887 467777888
Q ss_pred CCCcEEEccCCcccccCCcchhccccccccCCccccceeecccccccceeeeeeeeeccchhhhhhcccceeEEEccCcc
Q 047929 578 SSLQILDVAYNRLSGSVPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNN 657 (790)
Q Consensus 578 ~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~ 657 (790)
++|++|++++|.+. .+|..+ ++.|+.|++++|+
T Consensus 410 ~~L~~L~Ls~N~l~-~l~~~~----------------------------------------------~~~L~~L~Ls~N~ 442 (549)
T 2z81_A 410 EKMRFLNLSSTGIR-VVKTCI----------------------------------------------PQTLEVLDVSNNN 442 (549)
T ss_dssp TTCCEEECTTSCCS-CCCTTS----------------------------------------------CTTCSEEECCSSC
T ss_pred ccccEEECCCCCcc-cccchh----------------------------------------------cCCceEEECCCCC
Confidence 89999999999876 233211 2346789999999
Q ss_pred CCCCCCcccccCCCCCEEeCCCCcCCcCCCccccCCCCCCEEeCcCccCccccCccccCCCCCCEEECcCCcccccCCC
Q 047929 658 FSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLSFLNHLNLSDNKLVGKIPS 736 (790)
Q Consensus 658 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~ 736 (790)
+++.+ ..+++|++|++++|+++ .+|. ...+++|++|++++|++++..|..+..+++|+.|++++|++.+..|.
T Consensus 443 l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 515 (549)
T 2z81_A 443 LDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 515 (549)
T ss_dssp CSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHHH
T ss_pred hhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCcc
Confidence 88542 57899999999999998 6676 46789999999999999988888899999999999999999887774
No 15
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1e-42 Score=394.50 Aligned_cols=490 Identities=22% Similarity=0.191 Sum_probs=336.8
Q ss_pred CCCCEEEccCccccccCcccCcCCCCCCEEECCCCCCCCCCcchhccCCCCCcEEEccCCcCCCCCCccCCCCCCCcEEe
Q 047929 172 PSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLD 251 (790)
Q Consensus 172 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~ 251 (790)
+.+++|++++|.+..+.+.+|..+++|++|++++|.+.+ ..|..+..+++|++|++++|.+.+..|..|.++++|++|+
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~-i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT-IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCE-ECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCc-cCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccc
Confidence 456677777777666666666666777777777666643 2234455666666666666666655556666666666666
Q ss_pred CCCCcCCccccccccCCCCCCEEEccCccccc-ccCcccccCCCCCCEEEccCCCCCCCcchhhhhhhccccCCC----C
Q 047929 252 LSYNQFNSTISDCFSNFDDLEYLSLGYNRLQG-TISSIGLENLTFIKTLDLSFNELGQDISEILDIISACAAFEL----E 326 (790)
Q Consensus 252 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L----~ 326 (790)
+++|.+.+..+..++.+++|++|++++|.+.+ .+|.. +.++++|++|++++|.+....+. .+..+.+| +
T Consensus 107 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~-~~~l~~L~~L~l~~n~l~~~~~~-----~~~~l~~L~~~~~ 180 (570)
T 2z63_A 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSIYCT-----DLRVLHQMPLLNL 180 (570)
T ss_dssp CTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGG-GGGCTTCCEEECTTSCCCEECGG-----GGHHHHTCTTCCC
T ss_pred ccccccccCCCccccccccccEEecCCCccceecChhh-hcccCCCCEEeCcCCccceecHH-----Hccchhccchhhh
Confidence 66666665544456666666666666666553 23333 55566666666666655444332 12222233 4
Q ss_pred EEEccCCccccccchhhccCCCCcEEEccCcccCC-CCCcCcCCCCCCCEEECcCCcCCCcCChhhhccccccceeecCC
Q 047929 327 SLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVSG-PLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANG 405 (790)
Q Consensus 327 ~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~ 405 (790)
.+++++|.+.+..+..+... +|++|++++|.... .++..+..++.++.+.+....+...
T Consensus 181 ~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~------------------- 240 (570)
T 2z63_A 181 SLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE------------------- 240 (570)
T ss_dssp EEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCC-------------------
T ss_pred hcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCc-------------------
Confidence 55555555544444443332 45555554442211 1122223333333332221111000
Q ss_pred CcceeecCCCCCCc--ccceEEEcCCC-CCCCCCCcccccCCCCCEEEccCCccCCCcccccccccccccCCCccCCCCC
Q 047929 406 NSVNFKINSKWVPP--FQLLALRLRSC-HLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPD 482 (790)
Q Consensus 406 ~~~~~~~~~~~~~~--~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~ 482 (790)
..+.......+..+ ..++.+.+..+ .+.+..+..+..+++|++|++++|.+.+ +|..+..+ +
T Consensus 241 ~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~--------------l~~~~~~~-~ 305 (570)
T 2z63_A 241 GNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER--------------VKDFSYNF-G 305 (570)
T ss_dssp SSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECS--------------CCBCCSCC-C
T ss_pred hhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchh--------------hhhhhccC-C
Confidence 00011111111111 23566777776 5566778889999999999999998764 34445666 9
Q ss_pred CcEEEccCCcccccCCcCCCCCCCCCEEEccCCcccccCCccccCCCCCcEEECcCCcccccC--chhhhhcCCCCcEEE
Q 047929 483 LRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNI--PTWMGERFSRLRILN 560 (790)
Q Consensus 483 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~--~~~~~~~~~~L~~L~ 560 (790)
|+.|++++|.+. .+|. ..+++|+.|++++|.+....+. ..+++|++|++++|.+.+.. +..+ ..+++|++|+
T Consensus 306 L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~-~~~~~L~~L~ 379 (570)
T 2z63_A 306 WQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSD-FGTTSLKYLD 379 (570)
T ss_dssp CSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHH-HTCSCCCEEE
T ss_pred ccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccc-cccCccCEEE
Confidence 999999999998 5554 4689999999999998866554 78899999999999987543 4555 4789999999
Q ss_pred cCCCcccccCCccccCCCCCcEEEccCCcccccCC-cchhccccccccCCccccceeecccccccceeeeeeeeeccchh
Q 047929 561 LRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVP-KCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMV 639 (790)
Q Consensus 561 L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p-~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 639 (790)
+++|++.+..+. +..+++|+.|++++|.+.+..| ..+.++
T Consensus 380 l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l-------------------------------------- 420 (570)
T 2z63_A 380 LSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSL-------------------------------------- 420 (570)
T ss_dssp CCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTC--------------------------------------
T ss_pred CCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcC--------------------------------------
Confidence 999999876554 8999999999999999986655 234443
Q ss_pred hhhhcccceeEEEccCccCCCCCCcccccCCCCCEEeCCCCcCC-cCCCccccCCCCCCEEeCcCccCccccCccccCCC
Q 047929 640 EYNSILNLVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFI-GKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLS 718 (790)
Q Consensus 640 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~ 718 (790)
+.|++|++++|.+.+..|..+..+++|++|++++|.++ +.+|..+..+++|++|++++|++.+..|..+..++
T Consensus 421 ------~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 494 (570)
T 2z63_A 421 ------RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS 494 (570)
T ss_dssp ------TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred ------CCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhccc
Confidence 34579999999999888999999999999999999997 57889999999999999999999988899999999
Q ss_pred CCCEEECcCCcccccCCCC-CcCCccCCccccCCccc
Q 047929 719 FLNHLNLSDNKLVGKIPSS-TQLQSFGASSITGNDLC 754 (790)
Q Consensus 719 ~L~~L~l~~n~l~~~~p~~-~~~~sl~~l~~~~n~l~ 754 (790)
+|++|++++|++.+.+|.. ..+.+|+.+++.+|++.
T Consensus 495 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 531 (570)
T 2z63_A 495 SLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531 (570)
T ss_dssp TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCccc
Confidence 9999999999999877765 56889999999999664
No 16
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=2.1e-41 Score=389.53 Aligned_cols=530 Identities=22% Similarity=0.213 Sum_probs=354.4
Q ss_pred CCCccccccCcCCCCCCEEeCCCCCCCCCCcCccccCCCCCCEEeCCCCcccccCCCCCCCCCCCcEEECcCCccccccc
Q 047929 58 ELGGKINPALVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHLDLSGSYYELRVE 137 (790)
Q Consensus 58 ~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~ls~~~~~~~~~ 137 (790)
+++ .+|+.+. +.+++|+|++|.++.. .+..|.++++|++|+|++|++++..|.+|.++++|++|+|++|++...+.
T Consensus 42 ~l~-~vP~~lp--~~~~~LdLs~N~i~~l-~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~ 117 (635)
T 4g8a_A 42 NFY-KIPDNLP--FSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL 117 (635)
T ss_dssp CCS-SCCSSSC--TTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECG
T ss_pred CcC-ccCCCCC--cCCCEEEeeCCCCCCC-CHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCH
Confidence 444 4555443 4789999999999854 35678999999999999999988677788999999999999887543322
Q ss_pred CccccCCCCCCcEEECCCCCCCCCchhHHhhCCCCCCCEEEccCccccccCcccCcCCCCCCEEECCCCCCCCCCcchhc
Q 047929 138 DISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWV 217 (790)
Q Consensus 138 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~lp~~l 217 (790)
. .+.++++|++|++++|.+..+++..|+++++|++|++++|.+.....|..+
T Consensus 118 ~----------------------------~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~ 169 (635)
T 4g8a_A 118 G----------------------------AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF 169 (635)
T ss_dssp G----------------------------GGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGG
T ss_pred H----------------------------HhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhh
Confidence 1 567778888888888888888888888899999999999988766778888
Q ss_pred cCCCCCcEEEccCCcCCCCCCccCCCCCCC----cEEeCCCCcCCccccccccCCCCCCEEEccCcccccccCcccccCC
Q 047929 218 FGLSDLVFLDLSSNIFRGPIPDGFKNLTSL----RYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENL 293 (790)
Q Consensus 218 ~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L----~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~l 293 (790)
..+++|++|++++|++.+..+..+..+.++ ..++++.|.+....+..+. ...++.+++.+|..........+..+
T Consensus 170 ~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~-~~~~~~l~l~~n~~~~~~~~~~~~~l 248 (635)
T 4g8a_A 170 SNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLHKLTLRNNFDSLNVMKTCIQGL 248 (635)
T ss_dssp GGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTT-TCEEEEEEEESCCSSHHHHHHHHHTT
T ss_pred ccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCccccc-chhhhhhhhhcccccccccchhhcCC
Confidence 888999999999998887777666555443 4677888887765554443 34566777777655433333335666
Q ss_pred CCCCEEEccCCCCCCCcc-hhhhhhhccccCCCCEEEccCCccc---cccchhhccCCCCcEEEccCcccCCCCCcCcCC
Q 047929 294 TFIKTLDLSFNELGQDIS-EILDIISACAAFELESLFLRGCKIS---GQLTNQLGLFKNLHTLALSDNSVSGPLPPASGE 369 (790)
Q Consensus 294 ~~L~~L~l~~~~~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~---~~~~~~l~~l~~L~~L~L~~~~i~~~~~~~~~~ 369 (790)
..++...+..+....... .......+.....+....+..+... ......+....+++.+.+.++.+.... .+..
T Consensus 249 ~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~--~~~~ 326 (635)
T 4g8a_A 249 AGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVK--DFSY 326 (635)
T ss_dssp TTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECG--GGGS
T ss_pred cccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhccccccccccccccccc--cccc
Confidence 666655554322211100 0000001111222222222222111 011222333344444444444433211 1233
Q ss_pred CCCCCEEECcCCcCCCcCChhhhccccccceeecCCCcceeecCCCCCCcccceEEEcCCCCCCCCCCcccccCCCCCEE
Q 047929 370 LSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNFKINSKWVPPFQLLALRLRSCHLGPHFPSWLHSQKHLSKL 449 (790)
Q Consensus 370 l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 449 (790)
...++.|++.+|.+.... ...+..|+.+
T Consensus 327 ~~~L~~L~l~~~~~~~~~----------------------------------------------------~~~l~~L~~l 354 (635)
T 4g8a_A 327 NFGWQHLELVNCKFGQFP----------------------------------------------------TLKLKSLKRL 354 (635)
T ss_dssp CCCCSEEEEESCEESSCC----------------------------------------------------CCBCTTCCEE
T ss_pred chhhhhhhcccccccCcC----------------------------------------------------cccchhhhhc
Confidence 344444444444332211 1123445555
Q ss_pred EccCCccCCCcccccccccccccCCCccCCCCCCcEEEccCCcccc--cCCcCCCCCCCCCEEEccCCcccccCCccccC
Q 047929 450 DISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTG--SIPISMGTLTSLRSLNLRSNRLSGIIPVPFEN 527 (790)
Q Consensus 450 ~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~--~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~ 527 (790)
++..+..... .....+++|+.+++++|.+.. ..+..+..+.+|+.+++..+.+... +..+..
T Consensus 355 ~l~~n~~~~~---------------~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~-~~~~~~ 418 (635)
T 4g8a_A 355 TFTSNKGGNA---------------FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITM-SSNFLG 418 (635)
T ss_dssp EEESCCSCCB---------------CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEE-CSCCTT
T ss_pred ccccccCCCC---------------cccccccccccchhhccccccccccccchhhhhhhhhhhccccccccc-cccccc
Confidence 6555554322 112345677777777776642 2333445567778888877776643 345667
Q ss_pred CCCCcEEECcCCcccccCchhhhhcCCCCcEEEcCCCcccccCCccccCCCCCcEEEccCCcccc-cCCcchhccccccc
Q 047929 528 CSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSG-SVPKCINNFTAMAT 606 (790)
Q Consensus 528 l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~-~~p~~l~~l~~L~~ 606 (790)
+++|+.+++.++......+...+..+++++.++++.|.+.+..+..+..+++|+.|++++|.+.. ..|..+..++
T Consensus 419 l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~---- 494 (635)
T 4g8a_A 419 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR---- 494 (635)
T ss_dssp CTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT----
T ss_pred cccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhcc----
Confidence 78888888887777666665555678888888888888888778888888899999999887543 3455554444
Q ss_pred cCCccccceeecccccccceeeeeeeeeccchhhhhhcccceeEEEccCccCCCCCCcccccCCCCCEEeCCCCcCCcCC
Q 047929 607 IGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKI 686 (790)
Q Consensus 607 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 686 (790)
.|++|||++|++.+..|..|.++++|++|+|++|++++..
T Consensus 495 ----------------------------------------~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~ 534 (635)
T 4g8a_A 495 ----------------------------------------NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLD 534 (635)
T ss_dssp ----------------------------------------TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCC
T ss_pred ----------------------------------------ccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCC
Confidence 3568999999998888888999999999999999999888
Q ss_pred CccccCCCCCCEEeCcCccCccccCccccCC-CCCCEEECcCCcccccC
Q 047929 687 PETIGNMRSIESLDLSGNQISGKIPQSMSSL-SFLNHLNLSDNKLVGKI 734 (790)
Q Consensus 687 p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l-~~L~~L~l~~n~l~~~~ 734 (790)
|..|.++++|++|++++|++++..|..+..+ ++|+.|++++||+...-
T Consensus 535 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C 583 (635)
T 4g8a_A 535 TFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTC 583 (635)
T ss_dssp CGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSG
T ss_pred hhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccC
Confidence 8899999999999999999999999999888 68999999999998644
No 17
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.2e-41 Score=383.46 Aligned_cols=474 Identities=19% Similarity=0.220 Sum_probs=305.3
Q ss_pred CCCCEEEccCccccccCcccCcCCCCCCEEECCCCCCCCCCcchhccCCCCCcEEEccCCcCCCCCCccCCCCCCCcEEe
Q 047929 172 PSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLD 251 (790)
Q Consensus 172 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~ 251 (790)
++|++|++++|.+..+.+..+.++++|++|++++|.+.+ ..|..+..+++|++|++++|.+.+..|..|+++++|++|+
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 104 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINT-IEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLN 104 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEE
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCc-cChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEE
Confidence 455555555555555555555556666666666665543 2234455555666666666655554444455566666666
Q ss_pred CCCCcCCcc-ccccccCCCCCCEEEccCcccccccCcccccCCCCCCEEEccCCCCCCCcchhhhhhhccccCCCCEEEc
Q 047929 252 LSYNQFNST-ISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQDISEILDIISACAAFELESLFL 330 (790)
Q Consensus 252 l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l 330 (790)
+++|.+.+. .+..+..+++|++|++++|...+.++...+..+++|++|++++|.+.+..+. .+..+++|++|++
T Consensus 105 Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-----~l~~l~~L~~L~l 179 (549)
T 2z81_A 105 LMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQ-----SLKSIRDIHHLTL 179 (549)
T ss_dssp CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTT-----TTTTCSEEEEEEE
T ss_pred CCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChh-----hhhccccCceEec
Confidence 666655542 2344555566666666655533344433355555556666655555544333 3344455556666
Q ss_pred cCCccccccchhhccCCCCcEEEccCcccCCCC--C-cCcCCCCCCCEEECcCCcCCCcCChhhhccccccceeecCCCc
Q 047929 331 RGCKISGQLTNQLGLFKNLHTLALSDNSVSGPL--P-PASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNS 407 (790)
Q Consensus 331 ~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~~~--~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~ 407 (790)
++|.+.......+..+++|++|++++|.+.+.. + .....+++|+.|++++|.+.+....
T Consensus 180 ~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~------------------ 241 (549)
T 2z81_A 180 HLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFN------------------ 241 (549)
T ss_dssp ECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHH------------------
T ss_pred ccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHH------------------
Confidence 555554322222344666777777777666431 1 1223456666666666655432211
Q ss_pred ceeecCCCCCCcccceEEEcCCCCCCCCCCcccccCCCCCEEEccCCccCCCcccccccccccccCCCccCCCCCCcEEE
Q 047929 408 VNFKINSKWVPPFQLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLN 487 (790)
Q Consensus 408 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ 487 (790)
.++..+..+++|+.+++++|.+.+.... .......+..+++++.|.
T Consensus 242 ---------------------------~l~~~~~~~~~L~~l~l~~~~~~~~~~~-------~~~~~~~~~~l~~L~~L~ 287 (549)
T 2z81_A 242 ---------------------------ELLKLLRYILELSEVEFDDCTLNGLGDF-------NPSESDVVSELGKVETVT 287 (549)
T ss_dssp ---------------------------HHHGGGGGCTTCCEEEEESCEEECCSCC-------CCCTTTCCCCCTTCCEEE
T ss_pred ---------------------------HHHHHhhhhccccccccccccccccccc-------cccchhhhhhhccccccc
Confidence 0111234456677777777766543110 001112345678999999
Q ss_pred ccCCcccccC-----CcCCCCCCCCCEEEccCCcccccCCccccCCCCCcEEECcCCcccccCchh--hhhcCCCCcEEE
Q 047929 488 LGNNKFTGSI-----PISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTW--MGERFSRLRILN 560 (790)
Q Consensus 488 l~~n~~~~~~-----~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~--~~~~~~~L~~L~ 560 (790)
+.++.+.... +..+...++|+.|++++|++..+....+..+++|++|++++|.+.+.+|.. ....+++|++|+
T Consensus 288 l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~ 367 (549)
T 2z81_A 288 IRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLV 367 (549)
T ss_dssp EESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEE
T ss_pred ccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEE
Confidence 9998765321 111223578999999999998544444468999999999999998766533 124689999999
Q ss_pred cCCCcccccCC--ccccCCCCCcEEEccCCcccccCCcchhccccccccCCccccceeecccccccceeeeeeeeeccch
Q 047929 561 LRSNKLHGIFP--IQICHLSSLQILDVAYNRLSGSVPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFM 638 (790)
Q Consensus 561 L~~n~~~~~~~--~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 638 (790)
+++|++++..+ ..+..+++|++|++++|.++ .+|..+..++
T Consensus 368 Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~------------------------------------ 410 (549)
T 2z81_A 368 LSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPE------------------------------------ 410 (549)
T ss_dssp CTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCT------------------------------------
T ss_pred ccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccc------------------------------------
Confidence 99999986532 45788999999999999988 5665544433
Q ss_pred hhhhhcccceeEEEccCccCCCCCCcccccCCCCCEEeCCCCcCCcCCCccccCCCCCCEEeCcCccCccccCccccCCC
Q 047929 639 VEYNSILNLVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLS 718 (790)
Q Consensus 639 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~ 718 (790)
.|++|++++|.+. .+|..+ .++|++|++++|++++.. ..+++|++|++++|++. .+|. ...++
T Consensus 411 --------~L~~L~Ls~N~l~-~l~~~~--~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~ 473 (549)
T 2z81_A 411 --------KMRFLNLSSTGIR-VVKTCI--PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFP 473 (549)
T ss_dssp --------TCCEEECTTSCCS-CCCTTS--CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCT
T ss_pred --------cccEEECCCCCcc-cccchh--cCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCc
Confidence 4578999999998 455444 368999999999998642 57899999999999999 5676 56799
Q ss_pred CCCEEECcCCcccccCCCC-CcCCccCCccccCCcc-cCCC
Q 047929 719 FLNHLNLSDNKLVGKIPSS-TQLQSFGASSITGNDL-CGAP 757 (790)
Q Consensus 719 ~L~~L~l~~n~l~~~~p~~-~~~~sl~~l~~~~n~l-~~~~ 757 (790)
+|+.|++++|++.+.+|.. ..+.+|+.+++.+|++ |..|
T Consensus 474 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 474 VLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp TCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred cCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 9999999999999877764 5688999999999954 4443
No 18
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.7e-41 Score=379.22 Aligned_cols=394 Identities=16% Similarity=0.173 Sum_probs=219.6
Q ss_pred EEEEcCCCCCCccccccCcCCCCCCEEeCCCCCCCCCCcCccccCCCCCCEEeCCCCcccccCCCCCCCCCCCcEEECcC
Q 047929 50 LELNLERSELGGKINPALVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHLDLSG 129 (790)
Q Consensus 50 ~~L~L~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~ls~ 129 (790)
++|+++++.++ .+|..+. ++|++|++++|.+.+. .|+.|.++++|++|++++|++++..|.+++++++|++|++++
T Consensus 3 ~~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 78 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVPKDLS--QKTTILNISQNYISEL-WTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSH 78 (520)
T ss_dssp CEEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCC-CHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCS
T ss_pred ceEecCCCCcc-ccccccc--ccccEEECCCCccccc-ChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCC
Confidence 46788888887 5666555 7888888888888755 456788888888888888888886677888888888888887
Q ss_pred CcccccccCccccCCCCCCcEEECCCCCCCCCchhHHhhCCCCCCCEEEccCccccccCcccCcCCCCCCEEECCCCCCC
Q 047929 130 SYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFG 209 (790)
Q Consensus 130 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~ 209 (790)
|.+.. ++.. .+++|++|++++|.+.
T Consensus 79 N~l~~----------------------------------------------------lp~~---~l~~L~~L~L~~N~l~ 103 (520)
T 2z7x_B 79 NKLVK----------------------------------------------------ISCH---PTVNLKHLDLSFNAFD 103 (520)
T ss_dssp SCCCE----------------------------------------------------EECC---CCCCCSEEECCSSCCS
T ss_pred Cceee----------------------------------------------------cCcc---ccCCccEEeccCCccc
Confidence 75431 1111 3444555555555444
Q ss_pred CCCcchhccCCCCCcEEEccCCcCCCCCCccCCCCCCC--cEEeCCCCcC--CccccccccCCC-CCCEEEccCcccccc
Q 047929 210 KTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSL--RYLDLSYNQF--NSTISDCFSNFD-DLEYLSLGYNRLQGT 284 (790)
Q Consensus 210 ~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L--~~L~l~~~~~--~~~~~~~l~~l~-~L~~L~l~~~~l~~~ 284 (790)
+..+|..+..+++|++|++++|.+.+ ..+..+++| ++|++++|.+ .+..|..+..+. ....+++++|.+.+.
T Consensus 104 ~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~ 180 (520)
T 2z7x_B 104 ALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHF 180 (520)
T ss_dssp SCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCC
T ss_pred cccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhh
Confidence 33344455555555555555555443 234444444 5555555555 444444444333 122344555555555
Q ss_pred cCcccccCCCCCCEEEccCCCCCCCcchhhh-hhhccccCCCCEEEccCCccccccchhh---ccCCCCcEEEccCcccC
Q 047929 285 ISSIGLENLTFIKTLDLSFNELGQDISEILD-IISACAAFELESLFLRGCKISGQLTNQL---GLFKNLHTLALSDNSVS 360 (790)
Q Consensus 285 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~l---~~l~~L~~L~L~~~~i~ 360 (790)
++...+..+++|+.+++++|........... ...+..+++|+.|+++++.+.+.....+ ...++|++|++++|.+.
T Consensus 181 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 260 (520)
T 2z7x_B 181 ILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQ 260 (520)
T ss_dssp CCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEE
T ss_pred hhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeeccccc
Confidence 5554456666666666666541111100000 0133455666666666665553222111 12357788888888777
Q ss_pred CCCCcCc-----CCCCCCCEEECcCCcCCCcCChhhhccccccceeecCCCcceeecCCCCCCcccceEEEcCCCCCCCC
Q 047929 361 GPLPPAS-----GELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNFKINSKWVPPFQLLALRLRSCHLGPH 435 (790)
Q Consensus 361 ~~~~~~~-----~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 435 (790)
+.+|..+ +.++.|+.+++++|.+ .. +.
T Consensus 261 ~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~-p~---------------------------------------------- 292 (520)
T 2z7x_B 261 GQLDFRDFDYSGTSLKALSIHQVVSDVF-GF-PQ---------------------------------------------- 292 (520)
T ss_dssp SCCCCCCCCCCSCCCCEEEEEEEEECCC-CS-CT----------------------------------------------
T ss_pred CccccchhhcccccCceeEeccccccce-ec-ch----------------------------------------------
Confidence 6666665 4555555555555443 11 10
Q ss_pred CCcccccC---CCCCEEEccCCccCCCcccccccccccccCCCccCCCCCCcEEEccCCcccccCCcCCCCCCCCCEEEc
Q 047929 436 FPSWLHSQ---KHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNL 512 (790)
Q Consensus 436 ~~~~~~~~---~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L 512 (790)
..+..+ .+|+.|++++|.+... . .+..+++|++|++
T Consensus 293 --~~~~~~~~~~~L~~L~l~~n~l~~~-------------------------------------~--~~~~l~~L~~L~L 331 (520)
T 2z7x_B 293 --SYIYEIFSNMNIKNFTVSGTRMVHM-------------------------------------L--CPSKISPFLHLDF 331 (520)
T ss_dssp --HHHHHHHHTCCCSEEEEESSCCCCC-------------------------------------C--CCSSCCCCCEEEC
T ss_pred --hhhhcccccCceeEEEcCCCccccc-------------------------------------c--chhhCCcccEEEe
Confidence 011111 2344444444443221 1 0134455555555
Q ss_pred cCCcccccCCccccCCCCCcEEECcCCcccc--cCchhhhhcCCCCcEEEcCCCcccccCCc-cccCCCCCcEEEccCCc
Q 047929 513 RSNRLSGIIPVPFENCSQLVALDMGENEFVG--NIPTWMGERFSRLRILNLRSNKLHGIFPI-QICHLSSLQILDVAYNR 589 (790)
Q Consensus 513 ~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~--~~~~~~~~~~~~L~~L~L~~n~~~~~~~~-~~~~l~~L~~L~ls~n~ 589 (790)
++|++++..+..+..+++|++|++++|.+.+ .+|..+ ..+++|++|++++|++++.+|. .+..+++|++|++++|.
T Consensus 332 s~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~-~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~ 410 (520)
T 2z7x_B 332 SNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMT-TQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNI 410 (520)
T ss_dssp CSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHH-TTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSC
T ss_pred ECCccChhhhhhhccCCCCCEEEccCCccCccccchHHH-hhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCC
Confidence 5555555455555555566666666665553 333333 3577777777777777763343 36677888888888887
Q ss_pred ccccCC
Q 047929 590 LSGSVP 595 (790)
Q Consensus 590 l~~~~p 595 (790)
+++..|
T Consensus 411 l~~~~~ 416 (520)
T 2z7x_B 411 LTDTIF 416 (520)
T ss_dssp CCGGGG
T ss_pred CCcchh
Confidence 764433
No 19
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.6e-41 Score=385.91 Aligned_cols=346 Identities=18% Similarity=0.314 Sum_probs=229.7
Q ss_pred ccccCCCCEEEccCCccccc-----------------cchhhc--cCCCCcEEEccCcccCCCCCcCcCCCCCCCEEECc
Q 047929 319 ACAAFELESLFLRGCKISGQ-----------------LTNQLG--LFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLS 379 (790)
Q Consensus 319 ~~~~~~L~~L~l~~~~~~~~-----------------~~~~l~--~l~~L~~L~L~~~~i~~~~~~~~~~l~~L~~L~l~ 379 (790)
+..+++|++|++++|.+++. +|..+. .+++|++|++++|.+.+.+|..++.+++|++|+++
T Consensus 202 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls 281 (636)
T 4eco_A 202 VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVA 281 (636)
T ss_dssp GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECT
T ss_pred HhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECc
Confidence 34455555555555555543 666666 77888888888888777777778888888888888
Q ss_pred CCc-CCC-cCChhhhccc------cccceeecCCCcceeecCC--CCCCcccceEEEcCCCCCCCCCCcccccCCCCCEE
Q 047929 380 NNN-LNG-MISEIHFGNL------TELAFFYANGNSVNFKINS--KWVPPFQLLALRLRSCHLGPHFPSWLHSQKHLSKL 449 (790)
Q Consensus 380 ~n~-~~~-~~~~~~~~~l------~~L~~l~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 449 (790)
+|. +++ ..+. .++.+ ++|+.+++.+|.+. .++. .+..+++|+.|++++|.+.+.+| .+..+++|++|
T Consensus 282 ~n~~l~~~~lp~-~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L 358 (636)
T 4eco_A 282 CNRGISGEQLKD-DWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASL 358 (636)
T ss_dssp TCTTSCHHHHHH-HHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEE
T ss_pred CCCCCccccchH-HHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEE
Confidence 887 665 3332 33333 67777777777666 5555 56666677777777777766666 66777777777
Q ss_pred EccCCccCCCcccccccccccccCCCccCCCCC-CcEEEccCCcccccCCcCCCCCC--CCCEEEccCCcccccCCcccc
Q 047929 450 DISNTRISDIIPRWFWNSIYQDTIPDCWMNWPD-LRVLNLGNNKFTGSIPISMGTLT--SLRSLNLRSNRLSGIIPVPFE 526 (790)
Q Consensus 450 ~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~-L~~L~l~~n~~~~~~~~~~~~l~--~L~~L~L~~n~i~~~~~~~l~ 526 (790)
++++|.+. .+|..+..+++ |++|++++|.++ .+|..+..++ +|+.|++++|.+.+..|..+.
T Consensus 359 ~L~~N~l~--------------~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~ 423 (636)
T 4eco_A 359 NLAYNQIT--------------EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFD 423 (636)
T ss_dssp ECCSSEEE--------------ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSC
T ss_pred ECCCCccc--------------cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhc
Confidence 77777754 23444556666 777777777777 5666655543 677777777777776666666
Q ss_pred -------CCCCCcEEECcCCcccccCchhhhhcCCCCcEEEcCCCcccccCCccccCC-------CCCcEEEccCCcccc
Q 047929 527 -------NCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHL-------SSLQILDVAYNRLSG 592 (790)
Q Consensus 527 -------~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l-------~~L~~L~ls~n~l~~ 592 (790)
.+++|+.|++++|.+. .+|..++..+++|++|++++|+++...+..+... ++|+.|++++|.++
T Consensus 424 ~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~- 501 (636)
T 4eco_A 424 PLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT- 501 (636)
T ss_dssp TTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-
T ss_pred ccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-
Confidence 6667777777777776 6666666567777777777777773332223222 26777777777776
Q ss_pred cCCcchh--ccccccccCCccccceeecccccccceeeeeeeeeccchhhhhhcccceeEEEccCccCCCCCCcccccCC
Q 047929 593 SVPKCIN--NFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGEIPMEVTNLK 670 (790)
Q Consensus 593 ~~p~~l~--~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~ 670 (790)
.+|..+. .++ .|+.|+|++|.+.+ +|..+..++
T Consensus 502 ~lp~~~~~~~l~--------------------------------------------~L~~L~Ls~N~l~~-ip~~~~~l~ 536 (636)
T 4eco_A 502 KLSDDFRATTLP--------------------------------------------YLVGIDLSYNSFSK-FPTQPLNSS 536 (636)
T ss_dssp BCCGGGSTTTCT--------------------------------------------TCCEEECCSSCCSS-CCCGGGGCS
T ss_pred ccChhhhhccCC--------------------------------------------CcCEEECCCCCCCC-cChhhhcCC
Confidence 4554433 333 34567777777775 677777777
Q ss_pred CCCEEeC------CCCcCCcCCCccccCCCCCCEEeCcCccCccccCccccCCCCCCEEECcCCcccc
Q 047929 671 GLQSLNL------SHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLSFLNHLNLSDNKLVG 732 (790)
Q Consensus 671 ~L~~L~L------~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~ 732 (790)
+|++|++ ++|.+.+.+|.++..+++|++|++++|++ +.+|..+. ++|+.|++++|++..
T Consensus 537 ~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 537 TLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNIS 601 (636)
T ss_dssp SCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTCE
T ss_pred CCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCcc
Confidence 7777777 44666667777777777777777777777 35666554 677777777776654
No 20
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=7.6e-41 Score=373.90 Aligned_cols=460 Identities=20% Similarity=0.198 Sum_probs=259.0
Q ss_pred CEEEccCccccccCcccCcCCCCCCEEECCCCCCCCCCcchhccCCCCCcEEEccCCcCCCCCCccCCCCCCCcEEeCCC
Q 047929 175 KVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSY 254 (790)
Q Consensus 175 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~ 254 (790)
++|++++|.++.++.... ++|++|++++|.+.+ ..|..+..+++|++|++++|++.+..|..|+++++|++|++++
T Consensus 3 ~~l~ls~n~l~~ip~~~~---~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 78 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS---QKTTILNISQNYISE-LWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSH 78 (520)
T ss_dssp CEEECTTSCCSSCCCSCC---TTCSEEECCSSCCCC-CCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCS
T ss_pred ceEecCCCCccccccccc---ccccEEECCCCcccc-cChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCC
Confidence 456666666665543322 666666666666643 2334566666666666666666655566666666666666666
Q ss_pred CcCCccccccccCCCCCCEEEccCccccc-ccCcccccCCCCCCEEEccCCCCCCCcchhhhhhhccccCCC--CEEEcc
Q 047929 255 NQFNSTISDCFSNFDDLEYLSLGYNRLQG-TISSIGLENLTFIKTLDLSFNELGQDISEILDIISACAAFEL--ESLFLR 331 (790)
Q Consensus 255 ~~~~~~~~~~l~~l~~L~~L~l~~~~l~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L--~~L~l~ 331 (790)
|++.. +|.. .+++|++|++++|.+.+ .+|.. +..+++|++|++++|.+... .+..+++| +.|+++
T Consensus 79 N~l~~-lp~~--~l~~L~~L~L~~N~l~~~~~p~~-~~~l~~L~~L~L~~n~l~~~--------~~~~l~~L~L~~L~l~ 146 (520)
T 2z7x_B 79 NKLVK-ISCH--PTVNLKHLDLSFNAFDALPICKE-FGNMSQLKFLGLSTTHLEKS--------SVLPIAHLNISKVLLV 146 (520)
T ss_dssp SCCCE-EECC--CCCCCSEEECCSSCCSSCCCCGG-GGGCTTCCEEEEEESSCCGG--------GGGGGTTSCEEEEEEE
T ss_pred Cceee-cCcc--ccCCccEEeccCCccccccchhh-hccCCcceEEEecCcccchh--------hccccccceeeEEEee
Confidence 66663 2332 56666666666666654 23333 56666666666666655431 22233344 555555
Q ss_pred CCcc--ccccchhhccCC-CCcEEEccCcccCCCCC-cCcCCCCCCCEEECcCCcCCCcCChhhhccccccceeecCCCc
Q 047929 332 GCKI--SGQLTNQLGLFK-NLHTLALSDNSVSGPLP-PASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNS 407 (790)
Q Consensus 332 ~~~~--~~~~~~~l~~l~-~L~~L~L~~~~i~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~ 407 (790)
+|.+ .+..|..+..+. +...+++++|.+.+.++ ..+..+++|+.|++++|....... .
T Consensus 147 ~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~------------------~ 208 (520)
T 2z7x_B 147 LGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCS------------------Y 208 (520)
T ss_dssp ECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTH------------------H
T ss_pred cccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccc------------------e
Confidence 5555 334444433332 12233444444433222 233344445555444443000000 0
Q ss_pred ceeecCCCCCCcccceEEEcCCCCCCCCCCccc---ccCCCCCEEEccCCccCCCcccccccccccccCCCcc-----CC
Q 047929 408 VNFKINSKWVPPFQLLALRLRSCHLGPHFPSWL---HSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCW-----MN 479 (790)
Q Consensus 408 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~-----~~ 479 (790)
+....+ .+..+++|+.|++++|.+.+..+..+ ...++|++|++++|.+.+. +|..+ ..
T Consensus 209 ~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-------------~p~~~~~~~~~~ 274 (520)
T 2z7x_B 209 FLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQ-------------LDFRDFDYSGTS 274 (520)
T ss_dssp HHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESC-------------CCCCCCCCCSCC
T ss_pred eecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCc-------------cccchhhccccc
Confidence 111111 22333444444444443332111110 1134677777777765532 22223 56
Q ss_pred CCCCcEEEccCCcccccCC-cCCCCC---CCCCEEEccCCcccccCCccccCCCCCcEEECcCCcccccCchhhhhcCCC
Q 047929 480 WPDLRVLNLGNNKFTGSIP-ISMGTL---TSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSR 555 (790)
Q Consensus 480 l~~L~~L~l~~n~~~~~~~-~~~~~l---~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~ 555 (790)
+++|+.+++++|.+ .+| ..+..+ ++|+.|++++|++.... .+..+++|++|++++|.+.+.+|..+. .+++
T Consensus 275 l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~ 349 (520)
T 2z7x_B 275 LKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCG-HLTE 349 (520)
T ss_dssp CCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCC-CCSS
T ss_pred CceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhc-cCCC
Confidence 67777777777776 233 222222 56777777777765432 125667777777777777766666553 6777
Q ss_pred CcEEEcCCCcccc--cCCccccCCCCCcEEEccCCcccccCCcc-hhccccccccCCccccceeecccccccceeeeeee
Q 047929 556 LRILNLRSNKLHG--IFPIQICHLSSLQILDVAYNRLSGSVPKC-INNFTAMATIGSHHQVKAIYHASFENDYIVEEISL 632 (790)
Q Consensus 556 L~~L~L~~n~~~~--~~~~~~~~l~~L~~L~ls~n~l~~~~p~~-l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 632 (790)
|++|++++|++++ ..|..+..+++|++|++++|.+.+.+|.. +..
T Consensus 350 L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~-------------------------------- 397 (520)
T 2z7x_B 350 LETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSW-------------------------------- 397 (520)
T ss_dssp CCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCC--------------------------------
T ss_pred CCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhcc--------------------------------
Confidence 7777777777765 33455677777777777777776544432 222
Q ss_pred eeccchhhhhhcccceeEEEccCccCCCCCCcccccCCCCCEEeCCCCcCCcCCCccccCCCCCCEEeCcCccCccccCc
Q 047929 633 VMKGFMVEYNSILNLVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQ 712 (790)
Q Consensus 633 ~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~ 712 (790)
++.|++|++++|.+++..|..+. ++|++|++++|+++ .+|..+..+++|++|++++|+++. +|.
T Consensus 398 ------------l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~ 461 (520)
T 2z7x_B 398 ------------TKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKS-VPD 461 (520)
T ss_dssp ------------CTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CCT
T ss_pred ------------CccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCc-cCH
Confidence 23456777777777766655543 67777888888777 666666677778888888887774 444
Q ss_pred -cccCCCCCCEEECcCCcccccCC
Q 047929 713 -SMSSLSFLNHLNLSDNKLVGKIP 735 (790)
Q Consensus 713 -~l~~l~~L~~L~l~~n~l~~~~p 735 (790)
.+..+++|++|++++|++.+..+
T Consensus 462 ~~~~~l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 462 GIFDRLTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp TTTTTCTTCCEEECCSSCBCCCHH
T ss_pred HHhccCCcccEEECcCCCCcccCC
Confidence 37777778888888877776544
No 21
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=6.3e-38 Score=360.48 Aligned_cols=525 Identities=21% Similarity=0.191 Sum_probs=353.7
Q ss_pred eCCCCCCCCCCcCccccCCCCCCEEeCCCCcccccCCCCCCCCCCCcEEECcCCcccccccCccccCCCCCCcEEECCCC
Q 047929 77 DLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHLDLSGSYYELRVEDISWLAGPSLLEHLDTSDV 156 (790)
Q Consensus 77 ~Ls~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~ls~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 156 (790)
+-++-.++ ++|..+. +++++|||++|++++..+.+|.++++|++|+|++|.+...++.
T Consensus 37 ~c~~~~l~--~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~------------------ 94 (635)
T 4g8a_A 37 QCMELNFY--KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDG------------------ 94 (635)
T ss_dssp ECTTSCCS--SCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTT------------------
T ss_pred ECCCCCcC--ccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChh------------------
Confidence 44444555 4676553 5799999999999997778899999999999998875433221
Q ss_pred CCCCCchhHHhhCCCCCCCEEEccCccccccCcccCcCCCCCCEEECCCCCCCCCCcc-hhccCCCCCcEEEccCCcCCC
Q 047929 157 DLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIP-SWVFGLSDLVFLDLSSNIFRG 235 (790)
Q Consensus 157 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~lp-~~l~~l~~L~~L~l~~~~~~~ 235 (790)
++.++++|++|++++|++..+++.+|.++++|++|++++|.++. +| ..+..+++|++|++++|.+.+
T Consensus 95 ----------~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~--l~~~~~~~L~~L~~L~Ls~N~l~~ 162 (635)
T 4g8a_A 95 ----------AYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLAS--LENFPIGHLKTLKELNVAHNLIQS 162 (635)
T ss_dssp ----------TTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCC--STTCCCTTCTTCCEEECCSSCCCC
T ss_pred ----------HhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCC--CChhhhhcCcccCeeccccCcccc
Confidence 56677788888888888888888888888888888888887754 43 346777888888888887764
Q ss_pred -CCCccCCCCCCCcEEeCCCCcCCccccccccCCCCC----CEEEccCcccccccCcccccCCCCCCEEEccCCCCCCCc
Q 047929 236 -PIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDL----EYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQDI 310 (790)
Q Consensus 236 -~~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L----~~L~l~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 310 (790)
..|..++.+++|++|++++|++.+..+..+..+.++ ..++++.|.+.. ++.. ......++.+++.++.....
T Consensus 163 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~-i~~~-~~~~~~~~~l~l~~n~~~~~- 239 (635)
T 4g8a_A 163 FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPG-AFKEIRLHKLTLRNNFDSLN- 239 (635)
T ss_dssp CCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCE-ECTT-TTTTCEEEEEEEESCCSSHH-
T ss_pred CCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccc-cCcc-cccchhhhhhhhhccccccc-
Confidence 356667777888888888887777666665544333 345666666542 2222 12223344455544432211
Q ss_pred chhhhhhhccccCCCCEEEccCCccccccchhhccCCCCcEEEccCccc------CCCCCcCcCCCCCCCEEECcCCcCC
Q 047929 311 SEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSV------SGPLPPASGELSSLTYLDLSNNNLN 384 (790)
Q Consensus 311 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~i------~~~~~~~~~~l~~L~~L~l~~n~~~ 384 (790)
..+..+..+..++...+..+.. .......+..+..++..++..+...
T Consensus 240 ---------------------------~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~ 292 (635)
T 4g8a_A 240 ---------------------------VMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLD 292 (635)
T ss_dssp ---------------------------HHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCC
T ss_pred ---------------------------ccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhc
Confidence 1122233334444333322111 1111222233333433333322211
Q ss_pred CcC--ChhhhccccccceeecCCCcceeecCCCCCCcccceEEEcCCCCCCCCCCcccccCCCCCEEEccCCccCCCccc
Q 047929 385 GMI--SEIHFGNLTELAFFYANGNSVNFKINSKWVPPFQLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPR 462 (790)
Q Consensus 385 ~~~--~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~ 462 (790)
... ....+..+..+..+ .+.++.+... ..+.....++.|++.+|.+..+..
T Consensus 293 ~~~~~~~~~~~~~~~l~~l------------------------~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~- 345 (635)
T 4g8a_A 293 YYLDGIIDLFNCLTNVSSF------------------------SLVSVTIERV--KDFSYNFGWQHLELVNCKFGQFPT- 345 (635)
T ss_dssp SCEEECTTTTGGGTTCSEE------------------------EEESCEEEEC--GGGGSCCCCSEEEEESCEESSCCC-
T ss_pred ccccchhhhhhhhcccccc------------------------cccccccccc--cccccchhhhhhhcccccccCcCc-
Confidence 100 00012222333333 3333222111 123445678889998888765422
Q ss_pred ccccccccccCCCccCCCCCCcEEEccCCcccccCCcCCCCCCCCCEEEccCCccccc--CCccccCCCCCcEEECcCCc
Q 047929 463 WFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGI--IPVPFENCSQLVALDMGENE 540 (790)
Q Consensus 463 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~--~~~~l~~l~~L~~L~l~~n~ 540 (790)
..++.|+.+.+.+|...... ....+++|+.+++++|.+... .+..+..+.+|+.+++..+.
T Consensus 346 ---------------~~l~~L~~l~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~ 408 (635)
T 4g8a_A 346 ---------------LKLKSLKRLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNG 408 (635)
T ss_dssp ---------------CBCTTCCEEEEESCCSCCBC--CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCS
T ss_pred ---------------ccchhhhhcccccccCCCCc--ccccccccccchhhccccccccccccchhhhhhhhhhhccccc
Confidence 24577889999988876432 345688999999999987543 44556678899999999987
Q ss_pred ccccCchhhhhcCCCCcEEEcCCCcccccCC-ccccCCCCCcEEEccCCcccccCCcchhccccccccCCccccceeecc
Q 047929 541 FVGNIPTWMGERFSRLRILNLRSNKLHGIFP-IQICHLSSLQILDVAYNRLSGSVPKCINNFTAMATIGSHHQVKAIYHA 619 (790)
Q Consensus 541 ~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~-~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~ 619 (790)
.... +..+ ..+++|+.+++.++......+ ..+..+++++.+++++|.+.+..|..+..++.
T Consensus 409 ~~~~-~~~~-~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~---------------- 470 (635)
T 4g8a_A 409 VITM-SSNF-LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS---------------- 470 (635)
T ss_dssp EEEE-CSCC-TTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTT----------------
T ss_pred cccc-cccc-cccccccchhhhhccccccccccccccccccccccccccccccccccccccchh----------------
Confidence 7643 3333 368899999999887765433 45778899999999999988776665554443
Q ss_pred cccccceeeeeeeeeccchhhhhhcccceeEEEccCccCC-CCCCcccccCCCCCEEeCCCCcCCcCCCccccCCCCCCE
Q 047929 620 SFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFS-GEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIES 698 (790)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 698 (790)
++.|++++|.+. +..|..+..+++|++|+|++|++++..|.+|.++++|++
T Consensus 471 ----------------------------L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~ 522 (635)
T 4g8a_A 471 ----------------------------LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV 522 (635)
T ss_dssp ----------------------------CCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred ----------------------------hhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCE
Confidence 568999999854 457888999999999999999999999999999999999
Q ss_pred EeCcCccCccccCccccCCCCCCEEECcCCcccccCCCCCc--CCccCCccccCCcc-cC
Q 047929 699 LDLSGNQISGKIPQSMSSLSFLNHLNLSDNKLVGKIPSSTQ--LQSFGASSITGNDL-CG 755 (790)
Q Consensus 699 L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~--~~sl~~l~~~~n~l-~~ 755 (790)
|+|++|++++..|..|..+++|+.|++++|++.+.+|.... +.+|+.+++.+|++ |.
T Consensus 523 L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~ 582 (635)
T 4g8a_A 523 LNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 582 (635)
T ss_dssp EECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCS
T ss_pred EECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCccc
Confidence 99999999988899999999999999999999998887743 47899999999955 54
No 22
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=8.4e-39 Score=368.29 Aligned_cols=359 Identities=20% Similarity=0.299 Sum_probs=230.6
Q ss_pred cccccccCcccccCCCCCCEEEccCCCCCCC-----------------cchhhhhhhcc--ccCCCCEEEccCCcccccc
Q 047929 279 NRLQGTISSIGLENLTFIKTLDLSFNELGQD-----------------ISEILDIISAC--AAFELESLFLRGCKISGQL 339 (790)
Q Consensus 279 ~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~-----------------~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~ 339 (790)
|.+++ +|.. +.++++|+.|++++|.+.+. ++. .+. .+++|+.|++++|.+.+.+
T Consensus 435 N~L~~-IP~~-l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~-----~l~f~~L~~L~~L~Ls~N~l~~~i 507 (876)
T 4ecn_A 435 NRITF-ISKA-IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENE-----ELSWSNLKDLTDVELYNCPNMTQL 507 (876)
T ss_dssp CEEEE-ECGG-GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTS-----CCCGGGCTTCCEEEEESCTTCCSC
T ss_pred Ccccc-hhHH-HhcCCCCCEEECcCCcCCCCcccccccccccccccccCCh-----hhhhccCCCCCEEECcCCCCCccC
Confidence 45554 5544 56666666666666666551 222 223 5666666666666666666
Q ss_pred chhhccCCCCcEEEccCcc-cCC-CCCcCcC-------CCCCCCEEECcCCcCCCcCChhhhccccccceeecCCCccee
Q 047929 340 TNQLGLFKNLHTLALSDNS-VSG-PLPPASG-------ELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNF 410 (790)
Q Consensus 340 ~~~l~~l~~L~~L~L~~~~-i~~-~~~~~~~-------~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~ 410 (790)
|..+..+++|+.|++++|+ +++ .+|..++ .+++|+.|++++|.+...+....++.+++|+.+++++|.+.
T Consensus 508 P~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~- 586 (876)
T 4ecn_A 508 PDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR- 586 (876)
T ss_dssp CGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCC-
T ss_pred hHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcc-
Confidence 6666666677777777666 554 4554333 33467777777776663322123455555555544444433
Q ss_pred ecCCCCCCcccceEEEcCCCCCCCCCCcccccCCCCCEEEccCCccCCCcccccccccccccCCCccCCCCC-CcEEEcc
Q 047929 411 KINSKWVPPFQLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPD-LRVLNLG 489 (790)
Q Consensus 411 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~-L~~L~l~ 489 (790)
.+| .+..+++|++|++++|.+.. +|..+..+++ |+.|+++
T Consensus 587 ------------------------~lp-~~~~L~~L~~L~Ls~N~l~~--------------lp~~l~~l~~~L~~L~Ls 627 (876)
T 4ecn_A 587 ------------------------HLE-AFGTNVKLTDLKLDYNQIEE--------------IPEDFCAFTDQVEGLGFS 627 (876)
T ss_dssp ------------------------BCC-CCCTTSEESEEECCSSCCSC--------------CCTTSCEECTTCCEEECC
T ss_pred ------------------------cch-hhcCCCcceEEECcCCcccc--------------chHHHhhccccCCEEECc
Confidence 222 34445555556665555432 2333445555 6666666
Q ss_pred CCcccccCCcCCCCCC--CCCEEEccCCcccccCCccc---c--CCCCCcEEECcCCcccccCchhhhhcCCCCcEEEcC
Q 047929 490 NNKFTGSIPISMGTLT--SLRSLNLRSNRLSGIIPVPF---E--NCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLR 562 (790)
Q Consensus 490 ~n~~~~~~~~~~~~l~--~L~~L~L~~n~i~~~~~~~l---~--~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~ 562 (790)
+|.++ .+|..+..++ +|+.|++++|++.+..|... . .+++|+.|++++|.+. .+|..++..+++|+.|+++
T Consensus 628 ~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls 705 (876)
T 4ecn_A 628 HNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILS 705 (876)
T ss_dssp SSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECC
T ss_pred CCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECC
Confidence 66666 4555555443 37777777777665443211 1 2347788888888877 6777776677888888888
Q ss_pred CCcccccCCccccC--------CCCCcEEEccCCcccccCCcchh--ccccccccCCccccceeecccccccceeeeeee
Q 047929 563 SNKLHGIFPIQICH--------LSSLQILDVAYNRLSGSVPKCIN--NFTAMATIGSHHQVKAIYHASFENDYIVEEISL 632 (790)
Q Consensus 563 ~n~~~~~~~~~~~~--------l~~L~~L~ls~n~l~~~~p~~l~--~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 632 (790)
+|+++. +|..+.. +++|+.|++++|.++ .+|..+. .++
T Consensus 706 ~N~L~~-ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~------------------------------ 753 (876)
T 4ecn_A 706 NNLMTS-IPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLP------------------------------ 753 (876)
T ss_dssp SCCCSC-CCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCT------------------------------
T ss_pred CCcCCc-cChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCC------------------------------
Confidence 888873 3433322 238888888888887 5665543 333
Q ss_pred eeccchhhhhhcccceeEEEccCccCCCCCCcccccCCCCCEEeCCC------CcCCcCCCccccCCCCCCEEeCcCccC
Q 047929 633 VMKGFMVEYNSILNLVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSH------NSFIGKIPETIGNMRSIESLDLSGNQI 706 (790)
Q Consensus 633 ~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~------n~l~~~~p~~l~~l~~L~~L~l~~n~l 706 (790)
.|+.|+|++|.+.+ +|..+..+++|+.|+|++ |.+.+.+|.+|..+++|+.|++++|++
T Consensus 754 --------------~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L 818 (876)
T 4ecn_A 754 --------------YLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI 818 (876)
T ss_dssp --------------TCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred --------------CcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC
Confidence 45688888888886 788888889999998876 778888999999999999999999999
Q ss_pred ccccCccccCCCCCCEEECcCCcccccCCC
Q 047929 707 SGKIPQSMSSLSFLNHLNLSDNKLVGKIPS 736 (790)
Q Consensus 707 ~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~ 736 (790)
+.+|..+. ++|+.|++++|++...-+.
T Consensus 819 -~~Ip~~l~--~~L~~LdLs~N~l~~i~~~ 845 (876)
T 4ecn_A 819 -RKVDEKLT--PQLYILDIADNPNISIDVT 845 (876)
T ss_dssp -CBCCSCCC--SSSCEEECCSCTTCEEECG
T ss_pred -CccCHhhc--CCCCEEECCCCCCCccChH
Confidence 57888765 6899999999998754443
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=2.5e-38 Score=356.20 Aligned_cols=463 Identities=19% Similarity=0.233 Sum_probs=256.5
Q ss_pred cEEEEEcCCCCCCccccccCcCCCCCCEEeCCCCCCCCCCcCccccCCCCCCEEeCCCCcccccCCCCCCCCCCCcEEEC
Q 047929 48 HVLELNLERSELGGKINPALVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHLDL 127 (790)
Q Consensus 48 ~v~~L~L~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~l 127 (790)
..++++++++++++ +|..+. ++|++|++++|.+.+. .++.|.++++|++|++++|.+++..|.++..+++|++|++
T Consensus 32 ~~~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 107 (562)
T 3a79_B 32 LESMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISEL-RMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDV 107 (562)
T ss_dssp -CCEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCC-CGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCcEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCcccc-ChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEEC
Confidence 34788999998874 666554 7899999999998865 4578889999999999999998877888888888988888
Q ss_pred cCCcccccccCccccCCCCCCcEEECCCCCCCCCchhHHhhCCCCCCCEEEccCccccccCcccCcCCCCCCEEECCCCC
Q 047929 128 SGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNL 207 (790)
Q Consensus 128 s~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~ 207 (790)
++|.+.. ++.. .+++|++|++++|.
T Consensus 108 s~N~l~~----------------------------------------------------lp~~---~l~~L~~L~Ls~N~ 132 (562)
T 3a79_B 108 SHNRLQN----------------------------------------------------ISCC---PMASLRHLDLSFND 132 (562)
T ss_dssp TTSCCCE----------------------------------------------------ECSC---CCTTCSEEECCSSC
T ss_pred CCCcCCc----------------------------------------------------cCcc---ccccCCEEECCCCC
Confidence 8875431 1111 34455555555555
Q ss_pred CCCCCcchhccCCCCCcEEEccCCcCCCCCCccCCCCCCC--cEEeCCCCcC--CccccccccCCC--CCCEEEccCccc
Q 047929 208 FGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSL--RYLDLSYNQF--NSTISDCFSNFD--DLEYLSLGYNRL 281 (790)
Q Consensus 208 l~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L--~~L~l~~~~~--~~~~~~~l~~l~--~L~~L~l~~~~l 281 (790)
+....+|..+..+++|++|++++|.+.+. .+..+++| ++|++++|.+ .+..+..+..+. .+ .+++++|.+
T Consensus 133 l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l-~l~l~~n~~ 208 (562)
T 3a79_B 133 FDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVL-HLVFHPNSL 208 (562)
T ss_dssp CSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEE-EEEECSSSC
T ss_pred ccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcccccccCcceE-EEEecCccc
Confidence 54333445555555555555555555432 23333344 6666666655 444455444433 12 345556665
Q ss_pred ccccCcccccCCCCCCEEEccCCCCCCC-cchhhhhhhccccCCCCEEEccCCcccccc----chhhccCCCCcEEEccC
Q 047929 282 QGTISSIGLENLTFIKTLDLSFNELGQD-ISEILDIISACAAFELESLFLRGCKISGQL----TNQLGLFKNLHTLALSD 356 (790)
Q Consensus 282 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~----~~~l~~l~~L~~L~L~~ 356 (790)
.+.++...+..+++|+.+++++|..... ..... ..+...+.|+.+++.++.+.+.. +..+ ..++|++|++++
T Consensus 209 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~--~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~-~~~~L~~L~l~~ 285 (562)
T 3a79_B 209 FSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFL--SELTRGPTLLNVTLQHIETTWKCSVKLFQFF-WPRPVEYLNIYN 285 (562)
T ss_dssp CCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHH--HHHHSCSSCEEEEEEEEEECHHHHHHHHHHH-TTSSEEEEEEEE
T ss_pred hhhhhhhcccccceEEEecccccccccchHHHHH--HHHhccCcceEEEecCCcCcHHHHHHHHHhh-hcccccEEEEec
Confidence 5555555566667777777776642100 00100 12344566666666666544321 1111 234788888888
Q ss_pred cccCCCCCcCc-----CCCCCCCEEECcCCcCCCcCChhhhccccccceeecCCCcceeecCCCCCCcccceEEEcCCCC
Q 047929 357 NSVSGPLPPAS-----GELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNFKINSKWVPPFQLLALRLRSCH 431 (790)
Q Consensus 357 ~~i~~~~~~~~-----~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 431 (790)
|.+.+.+|..+ ..++.|+.+++..+.+ ..+...+.
T Consensus 286 n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~-------------------------------------- 325 (562)
T 3a79_B 286 LTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALY-------------------------------------- 325 (562)
T ss_dssp EEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHH--------------------------------------
T ss_pred cEeeccccchhhhcccccchheehhhccccee--ecChhhhh--------------------------------------
Confidence 88776666654 2222222222222222 00000000
Q ss_pred CCCCCCcccccCCCCCEEEccCCccCCCcccccccccccccCCCccCCCCCCcEEEccCCcccccCCcCCCCCCCCCEEE
Q 047929 432 LGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLN 511 (790)
Q Consensus 432 ~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 511 (790)
.+....+|++|++++|.+... . ....+++|++|+
T Consensus 326 -------~~~~~~~L~~L~l~~n~~~~~-------------------------------------~--~~~~l~~L~~L~ 359 (562)
T 3a79_B 326 -------SVFAEMNIKMLSISDTPFIHM-------------------------------------V--CPPSPSSFTFLN 359 (562)
T ss_dssp -------HHHHTCCCSEEEEESSCCCCC-------------------------------------C--CCSSCCCCCEEE
T ss_pred -------hhhccCcceEEEccCCCcccc-------------------------------------c--CccCCCCceEEE
Confidence 000113344455544443221 0 013345555555
Q ss_pred ccCCcccccCCccccCCCCCcEEECcCCcccc--cCchhhhhcCCCCcEEEcCCCcccccCC-ccccCCCCCcEEEccCC
Q 047929 512 LRSNRLSGIIPVPFENCSQLVALDMGENEFVG--NIPTWMGERFSRLRILNLRSNKLHGIFP-IQICHLSSLQILDVAYN 588 (790)
Q Consensus 512 L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~--~~~~~~~~~~~~L~~L~L~~n~~~~~~~-~~~~~l~~L~~L~ls~n 588 (790)
+++|++++..+..+..+++|++|++++|.+.+ .+|..+ ..+++|++|++++|++++.+| ..+..+++|+.|++++|
T Consensus 360 l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~-~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n 438 (562)
T 3a79_B 360 FTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMT-KNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSN 438 (562)
T ss_dssp CCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTT-TTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSS
T ss_pred CCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhh-cCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCC
Confidence 55555555455555555555555555555542 112222 356777777777777766333 34667778888888887
Q ss_pred cccccCCcchhccccccccCCccccceeecccccccceeeeeeeeeccchhhhhhcccceeEEEccCccCCCCCCccccc
Q 047929 589 RLSGSVPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGEIPMEVTN 668 (790)
Q Consensus 589 ~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~ 668 (790)
.+++..|..+ .
T Consensus 439 ~l~~~~~~~l--------------------------------------------------------------------~- 449 (562)
T 3a79_B 439 MLTGSVFRCL--------------------------------------------------------------------P- 449 (562)
T ss_dssp CCCGGGGSSC--------------------------------------------------------------------C-
T ss_pred CCCcchhhhh--------------------------------------------------------------------c-
Confidence 7764333211 1
Q ss_pred CCCCCEEeCCCCcCCcCCCccccCCCCCCEEeCcCccCccccCcc-ccCCCCCCEEECcCCcccccCC
Q 047929 669 LKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQS-MSSLSFLNHLNLSDNKLVGKIP 735 (790)
Q Consensus 669 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~-l~~l~~L~~L~l~~n~l~~~~p 735 (790)
++|++|++++|.++ .+|..+..+++|++|++++|+++. +|.. +..+++|+.|++++|++.+..|
T Consensus 450 -~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 450 -PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKS-VPDGVFDRLTSLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp -TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCC-CCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred -CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCC-CCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence 34555555555554 444444456666666666666663 3333 6666666666666666665444
No 24
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=3.1e-37 Score=347.36 Aligned_cols=456 Identities=22% Similarity=0.213 Sum_probs=270.2
Q ss_pred CEEECCCCCCCCCCcchhccCCCCCcEEEccCCcCCCCCCccCCCCCCCcEEeCCCCcCCccccccccCCCCCCEEEccC
Q 047929 199 NALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGY 278 (790)
Q Consensus 199 ~~L~L~~~~l~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 278 (790)
++++++++.++ .+|..+. ++|++|++++|.+.+..|..|.++++|++|++++|.+.+..+..|..+++|++|++++
T Consensus 34 ~~l~ls~~~L~--~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 109 (562)
T 3a79_B 34 SMVDYSNRNLT--HVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSH 109 (562)
T ss_dssp CEEECTTSCCC--SCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTT
T ss_pred cEEEcCCCCCc--cCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCC
Confidence 44444444442 2343332 4444555555544444444445555555555555554444444444455555555555
Q ss_pred cccccccCcccccCCCCCCEEEccCCCCCCCc-chhhhhhhccccCCCCEEEccCCccccccchhhccCCCC--cEEEcc
Q 047929 279 NRLQGTISSIGLENLTFIKTLDLSFNELGQDI-SEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNL--HTLALS 355 (790)
Q Consensus 279 ~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L--~~L~L~ 355 (790)
|.++ .++.. .+++|++|++++|.+.... +. .+..+++|++|++++|.+... .+..+++| ++|+++
T Consensus 110 N~l~-~lp~~---~l~~L~~L~Ls~N~l~~l~~p~-----~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~ 177 (562)
T 3a79_B 110 NRLQ-NISCC---PMASLRHLDLSFNDFDVLPVCK-----EFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLD 177 (562)
T ss_dssp SCCC-EECSC---CCTTCSEEECCSSCCSBCCCCG-----GGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEE
T ss_pred CcCC-ccCcc---ccccCCEEECCCCCccccCchH-----hhcccCcccEEecCCCccccC---chhhhhhceeeEEEee
Confidence 5444 33322 3444555555555444322 12 233444455555555544431 22333333 666666
Q ss_pred Cccc--CCCCCcCcCCCC--CCCEEECcCCcCCCcCChhhhccccccceeecCCCcceeecCCCCCCcccceEEEcCCCC
Q 047929 356 DNSV--SGPLPPASGELS--SLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNFKINSKWVPPFQLLALRLRSCH 431 (790)
Q Consensus 356 ~~~i--~~~~~~~~~~l~--~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 431 (790)
+|.+ .+..|..+..+. .+ .+++++|.+.+......+..+++|+.+++..|.... .
T Consensus 178 ~n~l~~~~~~~~~l~~l~~~~l-~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~--------------------~ 236 (562)
T 3a79_B 178 LVSYHIKGGETESLQIPNTTVL-HLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENC--------------------Q 236 (562)
T ss_dssp ESSCCCCSSSCCEEEECCEEEE-EEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTH--------------------H
T ss_pred cccccccccCcccccccCcceE-EEEecCccchhhhhhhcccccceEEEeccccccccc--------------------c
Confidence 6655 444444444332 11 334455554444433334444444444444332000 0
Q ss_pred CCCCCCcccccCCCCCEEEccCCccCCCcccccccccccccCCCccCCCCCCcEEEccCCcccccCCcCC-----CCCCC
Q 047929 432 LGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISM-----GTLTS 506 (790)
Q Consensus 432 ~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-----~~l~~ 506 (790)
........+..++.|+.++++++.+.+..... ++. ....++|++|++++|.+++.+|..+ ..++.
T Consensus 237 ~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~---------~~~-~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~ 306 (562)
T 3a79_B 237 RLMTFLSELTRGPTLLNVTLQHIETTWKCSVK---------LFQ-FFWPRPVEYLNIYNLTITERIDREEFTYSETALKS 306 (562)
T ss_dssp HHHHHHHHHHSCSSCEEEEEEEEEECHHHHHH---------HHH-HHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCE
T ss_pred hHHHHHHHHhccCcceEEEecCCcCcHHHHHH---------HHH-hhhcccccEEEEeccEeeccccchhhhcccccchh
Confidence 00001122455566777777666554321110 001 1123478888888888887777665 55555
Q ss_pred CCEEEccCCcccccCC-cccc---CCCCCcEEECcCCcccccCchhhhhcCCCCcEEEcCCCcccccCCccccCCCCCcE
Q 047929 507 LRSLNLRSNRLSGIIP-VPFE---NCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQI 582 (790)
Q Consensus 507 L~~L~L~~n~i~~~~~-~~l~---~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~ 582 (790)
|+.+++..+.+ ..| ..+. ...+|+.|++++|.+.... +...+++|++|++++|++++..|..+..+++|+.
T Consensus 307 L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~---~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 381 (562)
T 3a79_B 307 LMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMV---CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQT 381 (562)
T ss_dssp EEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCC---CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCE
T ss_pred eehhhccccee--ecChhhhhhhhccCcceEEEccCCCccccc---CccCCCCceEEECCCCccccchhhhhcccCCCCE
Confidence 55555555555 122 1121 1257899999998875322 1136789999999999999888888999999999
Q ss_pred EEccCCccccc--CCcchhccccccccCCccccceeecccccccceeeeeeeeeccchhhhhhcccceeEEEccCccCCC
Q 047929 583 LDVAYNRLSGS--VPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSG 660 (790)
Q Consensus 583 L~ls~n~l~~~--~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~ 660 (790)
|++++|.+++. +|..+.++ +.|+.|++++|.+.+
T Consensus 382 L~L~~N~l~~~~~~~~~~~~l--------------------------------------------~~L~~L~l~~N~l~~ 417 (562)
T 3a79_B 382 LILQRNGLKNFFKVALMTKNM--------------------------------------------SSLETLDVSLNSLNS 417 (562)
T ss_dssp EECCSSCCCBTTHHHHTTTTC--------------------------------------------TTCCEEECTTSCCBS
T ss_pred EECCCCCcCCcccchhhhcCC--------------------------------------------CCCCEEECCCCcCCC
Confidence 99999998752 22333333 345789999999997
Q ss_pred CCCc-ccccCCCCCEEeCCCCcCCcCCCccccCCCCCCEEeCcCccCccccCccccCCCCCCEEECcCCcccccCCC--C
Q 047929 661 EIPM-EVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLSFLNHLNLSDNKLVGKIPS--S 737 (790)
Q Consensus 661 ~~~~-~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~--~ 737 (790)
.+|. .+..+++|++|++++|.+++..|..+. ++|+.|++++|++. .+|..+..+++|++|++++|++.+ +|. .
T Consensus 418 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~ 493 (562)
T 3a79_B 418 HAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKS-VPDGVF 493 (562)
T ss_dssp CCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCC-CCTTST
T ss_pred ccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCC-CCHHHH
Confidence 5665 578899999999999999887776655 79999999999999 677777799999999999999995 655 3
Q ss_pred CcCCccCCccccCCccc
Q 047929 738 TQLQSFGASSITGNDLC 754 (790)
Q Consensus 738 ~~~~sl~~l~~~~n~l~ 754 (790)
..+.+|+.+++.+|++.
T Consensus 494 ~~l~~L~~L~l~~N~~~ 510 (562)
T 3a79_B 494 DRLTSLQYIWLHDNPWD 510 (562)
T ss_dssp TTCTTCCCEECCSCCBC
T ss_pred hcCCCCCEEEecCCCcC
Confidence 56889999999999653
No 25
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=1.2e-36 Score=314.54 Aligned_cols=293 Identities=30% Similarity=0.496 Sum_probs=218.3
Q ss_pred CChHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCcc--cCceeecCCC--CcEEEEEcCCCCCCc--cccccCcCCCCCCE
Q 047929 2 GCLESERVALIKLKQDFKDPSNHLASWIGDVDCCE--WGGVVCNNIT--GHVLELNLERSELGG--KINPALVDLKHLNL 75 (790)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~--~~~~~c~~~~--~~v~~L~L~~~~~~~--~~~~~l~~l~~L~~ 75 (790)
+|+.+|+.||++||+++.||. .+++|..+++||. |.||.|.... ++|++|+|+++.+.+ .+|+++.++++|++
T Consensus 2 ~c~~~~~~aL~~~k~~~~~~~-~l~~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~ 80 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLGNPT-TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNF 80 (313)
T ss_dssp CSCHHHHHHHHHHHHHTTCCG-GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSE
T ss_pred CCCHHHHHHHHHHHHhcCCcc-cccCCCCCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCCCe
Confidence 699999999999999998887 7899977689998 9999997544 899999999999998 88999999999999
Q ss_pred EeCCC-CCCCCCCcCccccCCCCCCEEeCCCCcccccCCCCCCCCCCCcEEECcCCcccccccCccccCCCCCCcEEECC
Q 047929 76 LDLSG-NDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHLDLSGSYYELRVEDISWLAGPSLLEHLDTS 154 (790)
Q Consensus 76 L~Ls~-~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~ls~~~~~~~~~~~~~l~~l~~L~~L~l~ 154 (790)
|++++ |.+.+. +|..++++++|++|++++|.+++.+|..+.++++|++|++++|.+.
T Consensus 81 L~L~~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~--------------------- 138 (313)
T 1ogq_A 81 LYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALS--------------------- 138 (313)
T ss_dssp EEEEEETTEESC-CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEE---------------------
T ss_pred eeCCCCCccccc-CChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccC---------------------
Confidence 99995 888765 8889999999999999999998878888888888888888876432
Q ss_pred CCCCCCCchhHHhhCCCCCCCEEEccCccccccCcccCcCCCCCCEEECCCCCCCCCCcchhccCCC-CCcEEEccCCcC
Q 047929 155 DVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLS-DLVFLDLSSNIF 233 (790)
Q Consensus 155 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~lp~~l~~l~-~L~~L~l~~~~~ 233 (790)
...+..+..+++|++|++++|.+.+ .+|..+..++ +|++|++++|.+
T Consensus 139 -------------------------------~~~p~~~~~l~~L~~L~L~~N~l~~-~~p~~l~~l~~~L~~L~L~~N~l 186 (313)
T 1ogq_A 139 -------------------------------GTLPPSISSLPNLVGITFDGNRISG-AIPDSYGSFSKLFTSMTISRNRL 186 (313)
T ss_dssp -------------------------------SCCCGGGGGCTTCCEEECCSSCCEE-ECCGGGGCCCTTCCEEECCSSEE
T ss_pred -------------------------------CcCChHHhcCCCCCeEECcCCcccC-cCCHHHhhhhhcCcEEECcCCee
Confidence 2233445556666666666666643 4666666666 777777777777
Q ss_pred CCCCCccCCCCCCCcEEeCCCCcCCccccccccCCCCCCEEEccCcccccccCcccccCCCCCCEEEccCCCCCCCcchh
Q 047929 234 RGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQDISEI 313 (790)
Q Consensus 234 ~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 313 (790)
.+.+|..+..++ |++|++++|.+.+..+..+..+++|+.|++++|.+.+.++. +..+
T Consensus 187 ~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~--~~~l-------------------- 243 (313)
T 1ogq_A 187 TGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK--VGLS-------------------- 243 (313)
T ss_dssp EEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG--CCCC--------------------
T ss_pred eccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc--cccc--------------------
Confidence 766777676665 77777777777666666666666666666666665533332 2333
Q ss_pred hhhhhccccCCCCEEEccCCccccccchhhccCCCCcEEEccCcccCCCCCcCcCCCCCCCEEECcCCc
Q 047929 314 LDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNN 382 (790)
Q Consensus 314 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~~~~~~~~~l~~L~~L~l~~n~ 382 (790)
++|++|++++|.+++..|..+..+++|++|++++|++++.+|.. +.+++|+.+++++|+
T Consensus 244 ---------~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 244 ---------KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp ---------TTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred ---------CCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence 44555555555555556666666777777777777776666654 566667777776665
No 26
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=2.1e-35 Score=324.18 Aligned_cols=397 Identities=19% Similarity=0.224 Sum_probs=243.1
Q ss_pred EEECCCCCCCCCCcchhccCCCCCcEEEccCCcCCCCCCccCCCCCCCcEEeCCCCcCCcc-ccccccCCCCCCEEEccC
Q 047929 200 ALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNST-ISDCFSNFDDLEYLSLGY 278 (790)
Q Consensus 200 ~L~L~~~~l~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~ 278 (790)
.++.+++.+ ..+|. + .++|++|++++|.+.+..|..|.++++|++|++++|.+.+. .+..|..+++|++|++++
T Consensus 14 ~~~c~~~~l--~~lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~ 88 (455)
T 3v47_A 14 NAICINRGL--HQVPE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88 (455)
T ss_dssp EEECCSSCC--SSCCC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred ccCcCCCCc--ccCCC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence 455555555 33555 2 25677777777777666666677777777777777766533 345566666666666666
Q ss_pred cccccccCcccccCCCCCCEEEccCCCCCCCcchhhhhhhccccCCCCEEEccCCccccccchhhccCCCCcEEEccCcc
Q 047929 279 NRLQGTISSIGLENLTFIKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSDNS 358 (790)
Q Consensus 279 ~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~ 358 (790)
|.+.+..+.. +..+++|++|++++|.+.+..+. ...+..+++|++|++++|.
T Consensus 89 n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~---------------------------~~~~~~l~~L~~L~L~~n~ 140 (455)
T 3v47_A 89 NQFLQLETGA-FNGLANLEVLTLTQCNLDGAVLS---------------------------GNFFKPLTSLEMLVLRDNN 140 (455)
T ss_dssp CTTCEECTTT-TTTCTTCCEEECTTSCCBTHHHH---------------------------SSTTTTCTTCCEEECCSSB
T ss_pred CccCccChhh-ccCcccCCEEeCCCCCCCccccC---------------------------cccccCcccCCEEECCCCc
Confidence 6665433333 55555555555555554331111 1114455555555555555
Q ss_pred cCCCCCcC-cCCCCCCCEEECcCCcCCCcCChhhhccccccceeecCCCcceeecCCCCCCcccceEEEcCCCCCCCCCC
Q 047929 359 VSGPLPPA-SGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNFKINSKWVPPFQLLALRLRSCHLGPHFP 437 (790)
Q Consensus 359 i~~~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 437 (790)
+.+..|.. +..+++|++|++++|.+.+..+. .+..+
T Consensus 141 l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~l~~l------------------------------------------ 177 (455)
T 3v47_A 141 IKKIQPASFFLNMRRFHVLDLTFNKVKSICEE-DLLNF------------------------------------------ 177 (455)
T ss_dssp CCSCCCCGGGGGCTTCCEEECTTCCBSCCCTT-TSGGG------------------------------------------
T ss_pred cCccCcccccCCCCcccEEeCCCCcccccChh-hhhcc------------------------------------------
Confidence 55444443 45555555555555555433221 11110
Q ss_pred cccccCCCCCEEEccCCccCCCcccccccccccccCCCccCCCCCCcEEEccCCcccccCCcCCCC---CCCCCEEEccC
Q 047929 438 SWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGT---LTSLRSLNLRS 514 (790)
Q Consensus 438 ~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~---l~~L~~L~L~~ 514 (790)
...+++.|++++|.+.+..+.++.. .....+..+++|++|++++|.+++..+..+.. .++|+.|++++
T Consensus 178 ----~~~~L~~L~l~~n~l~~~~~~~~~~-----~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~ 248 (455)
T 3v47_A 178 ----QGKHFTLLRLSSITLQDMNEYWLGW-----EKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSN 248 (455)
T ss_dssp ----TTCEEEEEECTTCBCTTCSTTCTTH-----HHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTT
T ss_pred ----ccccccccccccCcccccchhhccc-----cccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecc
Confidence 0022333444444433322211100 00011223455666666666655444433322 25666666666
Q ss_pred CcccccCCccccCCCCCcEEECcCCcccccCchhhh-hcCCCCcEEEcCCCcccccCCccccCCCCCcEEEccCCccccc
Q 047929 515 NRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMG-ERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGS 593 (790)
Q Consensus 515 n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~-~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~ 593 (790)
|...+.... . +.+.+..+..+. -..++|++|++++|++.+..+..+..+++|++|++++|.+.+.
T Consensus 249 ~~~~~~~~~-~-------------~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 314 (455)
T 3v47_A 249 SYNMGSSFG-H-------------TNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKI 314 (455)
T ss_dssp CTTTSCCTT-C-------------CSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEE
T ss_pred ccccccccc-h-------------hhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCccccc
Confidence 654432110 0 011100011110 1246788888888888888888888888888899888888877
Q ss_pred CCcchhccccccccCCccccceeecccccccceeeeeeeeeccchhhhhhcccceeEEEccCccCCCCCCcccccCCCCC
Q 047929 594 VPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGEIPMEVTNLKGLQ 673 (790)
Q Consensus 594 ~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 673 (790)
.|..+.++++ |++|++++|.+.+..|..+..+++|+
T Consensus 315 ~~~~~~~l~~--------------------------------------------L~~L~Ls~N~l~~~~~~~~~~l~~L~ 350 (455)
T 3v47_A 315 DDNAFWGLTH--------------------------------------------LLKLNLSQNFLGSIDSRMFENLDKLE 350 (455)
T ss_dssp CTTTTTTCTT--------------------------------------------CCEEECCSSCCCEECGGGGTTCTTCC
T ss_pred ChhHhcCccc--------------------------------------------CCEEECCCCccCCcChhHhcCcccCC
Confidence 6766655544 45888999988877788889999999
Q ss_pred EEeCCCCcCCcCCCccccCCCCCCEEeCcCccCccccCccccCCCCCCEEECcCCcccccCCCCCc
Q 047929 674 SLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLSFLNHLNLSDNKLVGKIPSSTQ 739 (790)
Q Consensus 674 ~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~ 739 (790)
+|++++|.+++..|.+|..+++|++|++++|++++..+..+..+++|++|++++|++.+.+|....
T Consensus 351 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~ 416 (455)
T 3v47_A 351 VLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDY 416 (455)
T ss_dssp EEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHH
T ss_pred EEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcchH
Confidence 999999999988899999999999999999999987777889999999999999999999986543
No 27
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=3.2e-35 Score=319.01 Aligned_cols=429 Identities=21% Similarity=0.253 Sum_probs=225.4
Q ss_pred ccCcCCCCCCEEeCCCCCCCCCCcCccccCCCCCCEEeCCCCcccccCCCCCCCCCCCcEEECcCCcccccccCccccCC
Q 047929 65 PALVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHLDLSGSYYELRVEDISWLAG 144 (790)
Q Consensus 65 ~~l~~l~~L~~L~Ls~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~ls~~~~~~~~~~~~~l~~ 144 (790)
+.-.+.++|++|++++|.+. .+|+.++++++|++|++++|.+.+.+|.+++++++|+++++++|..
T Consensus 5 p~~~~~~~L~~L~l~~n~l~--~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~------------ 70 (454)
T 1jl5_A 5 PRNVSNTFLQEPLRHSSNLT--EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD------------ 70 (454)
T ss_dssp -------------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH------------
T ss_pred ccccccccchhhhcccCchh--hCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc------------
Confidence 33445789999999999984 5899999999999999999999988999999999887666665531
Q ss_pred CCCCcEEECCCCCCCCCchhHHhhCCCCCCCEEEccCccccccCcccCcCCCCCCEEECCCCCCCCCCcchhccCCCCCc
Q 047929 145 PSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLV 224 (790)
Q Consensus 145 l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~L~ 224 (790)
.++++|+++++.+.+.+. -.++|++|++++|.+..++. ..++|++|++++|.+.+ +|.. .++|+
T Consensus 71 -~~l~~L~l~~~~l~~lp~------~~~~L~~L~l~~n~l~~lp~----~~~~L~~L~l~~n~l~~--l~~~---~~~L~ 134 (454)
T 1jl5_A 71 -RQAHELELNNLGLSSLPE------LPPHLESLVASCNSLTELPE----LPQSLKSLLVDNNNLKA--LSDL---PPLLE 134 (454)
T ss_dssp -HTCSEEECTTSCCSCCCS------CCTTCSEEECCSSCCSSCCC----CCTTCCEEECCSSCCSC--CCSC---CTTCC
T ss_pred -cCCCEEEecCCccccCCC------CcCCCCEEEccCCcCCcccc----ccCCCcEEECCCCccCc--ccCC---CCCCC
Confidence 456677777776665443 13678888888888777543 23788888888887743 4432 26888
Q ss_pred EEEccCCcCCCCCCccCCCCCCCcEEeCCCCcCCccccccccCCCCCCEEEccCcccccccCcccccCCCCCCEEEccCC
Q 047929 225 FLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFN 304 (790)
Q Consensus 225 ~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~l~~L~~L~l~~~ 304 (790)
+|++++|.+.+ +| .++++++|++|++++|++.+ +|.. ..+|++|++++|.+.+ ++. +..+++|+.|++++|
T Consensus 135 ~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~~--~~~l~~L~~L~l~~N 205 (454)
T 1jl5_A 135 YLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LPE--LQNLPFLTAIYADNN 205 (454)
T ss_dssp EEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CCC--CTTCTTCCEEECCSS
T ss_pred EEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Ccc--ccCCCCCCEEECCCC
Confidence 88888888875 66 48888888888888888875 3432 3578888888888874 552 778888888888888
Q ss_pred CCCCCcchhhhhhhccccCCCCEEEccCCccccccchhhccCCCCcEEEccCcccCCCCCcCcCCCCCCCEEECcCCcCC
Q 047929 305 ELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLN 384 (790)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~ 384 (790)
.+.+.+. ..++|++|++++|.+. .+| .+..+++|++|++++|++.+ +|. .+++|+.|++++|.+.
T Consensus 206 ~l~~l~~---------~~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~---~~~~L~~L~l~~N~l~ 270 (454)
T 1jl5_A 206 SLKKLPD---------LPLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLT 270 (454)
T ss_dssp CCSSCCC---------CCTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCS
T ss_pred cCCcCCC---------CcCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-ccc---cccccCEEECCCCccc
Confidence 8765322 1247888888888877 455 37778888888888888874 443 2477888888888877
Q ss_pred CcCChhhhccccccceeecCCCcceeecCCCCCCcccceEEEcCCCCCCCCCCcccccC-CCCCEEEccCCccCCCcccc
Q 047929 385 GMISEIHFGNLTELAFFYANGNSVNFKINSKWVPPFQLLALRLRSCHLGPHFPSWLHSQ-KHLSKLDISNTRISDIIPRW 463 (790)
Q Consensus 385 ~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~L~l~~~~i~~~~~~~ 463 (790)
+... ..++|+.+++++|.+..... .+++|+.|++++|.+.+. ..+ ++|++|++++|.+.++
T Consensus 271 ~l~~-----~~~~L~~L~ls~N~l~~l~~----~~~~L~~L~l~~N~l~~i-----~~~~~~L~~L~Ls~N~l~~l---- 332 (454)
T 1jl5_A 271 DLPE-----LPQSLTFLDVSENIFSGLSE----LPPNLYYLNASSNEIRSL-----CDLPPSLEELNVSNNKLIEL---- 332 (454)
T ss_dssp CCCC-----CCTTCCEEECCSSCCSEESC----CCTTCCEEECCSSCCSEE-----CCCCTTCCEEECCSSCCSCC----
T ss_pred ccCc-----ccCcCCEEECcCCccCcccC----cCCcCCEEECcCCcCCcc-----cCCcCcCCEEECCCCccccc----
Confidence 5332 13566666666665544211 124555566655554431 111 3556666666555432
Q ss_pred cccccccccCCCccCCCCCCcEEEccCCcccccCCcCCCCCCCCCEEEccCCcccc--cCCccccCCCCCcEEECcCCcc
Q 047929 464 FWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSG--IIPVPFENCSQLVALDMGENEF 541 (790)
Q Consensus 464 ~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~--~~~~~l~~l~~L~~L~l~~n~~ 541 (790)
|. .+++|+.|++++|.++ .+|. .+++|++|++++|++++ ..|..+ ..| +.|..
T Consensus 333 ----------p~---~~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l------~~L--~~n~~ 387 (454)
T 1jl5_A 333 ----------PA---LPPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESV------EDL--RMNSH 387 (454)
T ss_dssp ----------CC---CCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTC------CEE--ECCC-
T ss_pred ----------cc---cCCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHH------Hhh--hhccc
Confidence 11 1245566666666555 2333 24556666666665554 222222 222 22333
Q ss_pred cccCchhhhhcCCCCcEEEcCCCcccccCCccccCCCCCcEEEccCCcccccCCcch
Q 047929 542 VGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCI 598 (790)
Q Consensus 542 ~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l 598 (790)
.+.+|. .+++|++|++++|++++. +. + .++++.|.+.+|.+.+.+|...
T Consensus 388 ~~~i~~----~~~~L~~L~ls~N~l~~~-~~-i--P~sl~~L~~~~~~~~~~~~~~~ 436 (454)
T 1jl5_A 388 LAEVPE----LPQNLKQLHVETNPLREF-PD-I--PESVEDLRMNSERVVDPYEFAH 436 (454)
T ss_dssp ---------------------------------------------------------
T ss_pred cccccc----ccCcCCEEECCCCcCCcc-cc-c--hhhHhheeCcCcccCCccccCH
Confidence 334443 235677777777776642 10 1 2346666666666665554433
No 28
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=2.7e-34 Score=315.41 Aligned_cols=368 Identities=22% Similarity=0.197 Sum_probs=248.2
Q ss_pred CCCCEEEccCccccccCcccCcCCCCCCEEECCCCCCCCCCcchhccCCCCCcEEEccCCcCCCCCCccCCCCCCCcEEe
Q 047929 172 PSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLD 251 (790)
Q Consensus 172 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~ 251 (790)
++|++|++++|.+..+.+..+.++++|++|++++|.+.....+..+..+++|++|++++|.+.+..|..|+++++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 56777777777777777777777777777777777764322245566777777777777777766677777777777777
Q ss_pred CCCCcCCcccccc--ccCCCCCCEEEccCcccccccCcccccCCCCCCEEEccCCCCCCCcchhhhhhhccccCCCCEEE
Q 047929 252 LSYNQFNSTISDC--FSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQDISEILDIISACAAFELESLF 329 (790)
Q Consensus 252 l~~~~~~~~~~~~--l~~l~~L~~L~l~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 329 (790)
+++|.+.+..+.. +..+++|++|++++|.+.+..+...+..+++|++|++++|.+....+..+. .....+++.++
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~---~l~~~~L~~L~ 186 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLL---NFQGKHFTLLR 186 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSG---GGTTCEEEEEE
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhh---ccccccccccc
Confidence 7777776544333 677777777777777776554544356677777777777766555443211 01113555666
Q ss_pred ccCCccccccchhh--------ccCCCCcEEEccCcccCCCCCcCcCC---CCCCCEEECcCCcCCCcCChhhhcccccc
Q 047929 330 LRGCKISGQLTNQL--------GLFKNLHTLALSDNSVSGPLPPASGE---LSSLTYLDLSNNNLNGMISEIHFGNLTEL 398 (790)
Q Consensus 330 l~~~~~~~~~~~~l--------~~l~~L~~L~L~~~~i~~~~~~~~~~---l~~L~~L~l~~n~~~~~~~~~~~~~l~~L 398 (790)
+++|.+.+..+..+ ..+++|++|++++|.+.+..|..+.. .++|+.|++++|...+...
T Consensus 187 l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~---------- 256 (455)
T 3v47_A 187 LSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSF---------- 256 (455)
T ss_dssp CTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCT----------
T ss_pred cccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecccccccccc----------
Confidence 66665554332221 12344555555555544433333221 1445555555444322110
Q ss_pred ceeecCCCcceeecCCCCCCcccceEEEcCCCCCCCCCCcccc--cCCCCCEEEccCCccCCCcccccccccccccCCCc
Q 047929 399 AFFYANGNSVNFKINSKWVPPFQLLALRLRSCHLGPHFPSWLH--SQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDC 476 (790)
Q Consensus 399 ~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~ 476 (790)
....+....+..+. ..++|++|++++|.+.+. .+..
T Consensus 257 -----------------------------~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-------------~~~~ 294 (455)
T 3v47_A 257 -----------------------------GHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFAL-------------LKSV 294 (455)
T ss_dssp -----------------------------TCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEE-------------CTTT
T ss_pred -----------------------------chhhhccCcccccccccccCceEEEecCcccccc-------------chhh
Confidence 00001111111122 236788999999887653 3455
Q ss_pred cCCCCCCcEEEccCCcccccCCcCCCCCCCCCEEEccCCcccccCCccccCCCCCcEEECcCCcccccCchhhhhcCCCC
Q 047929 477 WMNWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRL 556 (790)
Q Consensus 477 ~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L 556 (790)
+..+++|+.|++++|.+.+..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..|..+. .+++|
T Consensus 295 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L 373 (455)
T 3v47_A 295 FSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFL-GLPNL 373 (455)
T ss_dssp TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTT-TCTTC
T ss_pred cccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhcc-ccccc
Confidence 67788999999999999988888889999999999999999888888899999999999999999876676664 78999
Q ss_pred cEEEcCCCcccccCCccccCCCCCcEEEccCCcccccCC
Q 047929 557 RILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVP 595 (790)
Q Consensus 557 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p 595 (790)
++|++++|++++..+..+..+++|+.|++++|++.+..|
T Consensus 374 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 374 KELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred cEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 999999999998777778899999999999999997776
No 29
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=1.9e-34 Score=312.85 Aligned_cols=405 Identities=20% Similarity=0.227 Sum_probs=173.9
Q ss_pred CCCCCCEEECCCCCCCCCCcchhccCCCCCcEEEccCCcCCCCCCccCCCCCCCcEEeCCCCcCCccccccccCCCCCCE
Q 047929 194 NFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEY 273 (790)
Q Consensus 194 ~l~~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 273 (790)
+.++|++|++++|.+ ..+|..++++++|++|++++|.+.+.+|..++++++|+.+++.+|.. .++++
T Consensus 9 ~~~~L~~L~l~~n~l--~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~-----------~~l~~ 75 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNL--TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD-----------RQAHE 75 (454)
T ss_dssp ---------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH-----------HTCSE
T ss_pred ccccchhhhcccCch--hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc-----------cCCCE
Confidence 357888899988888 36888888889999999998888888888888887763333322210 22344
Q ss_pred EEccCcccccccCcccccCCCCCCEEEccCCCCCCCcchhhhhhhccccCCCCEEEccCCccccccchhhccCCCCcEEE
Q 047929 274 LSLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLA 353 (790)
Q Consensus 274 L~l~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 353 (790)
|++++|.+++ +|.. .++|++|++++|.+.+.+. .+++|++|++++|.+.+. +. ..++|++|+
T Consensus 76 L~l~~~~l~~-lp~~----~~~L~~L~l~~n~l~~lp~---------~~~~L~~L~l~~n~l~~l-~~---~~~~L~~L~ 137 (454)
T 1jl5_A 76 LELNNLGLSS-LPEL----PPHLESLVASCNSLTELPE---------LPQSLKSLLVDNNNLKAL-SD---LPPLLEYLG 137 (454)
T ss_dssp EECTTSCCSC-CCSC----CTTCSEEECCSSCCSSCCC---------CCTTCCEEECCSSCCSCC-CS---CCTTCCEEE
T ss_pred EEecCCcccc-CCCC----cCCCCEEEccCCcCCcccc---------ccCCCcEEECCCCccCcc-cC---CCCCCCEEE
Confidence 4444444331 2111 1344444444444433111 113444444444444421 11 013555555
Q ss_pred ccCcccCCCCCcCcCCCCCCCEEECcCCcCCCcCChhhhccccccceeecCCCcceeecCCCCCCcccceEEEcCCCCCC
Q 047929 354 LSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNFKINSKWVPPFQLLALRLRSCHLG 433 (790)
Q Consensus 354 L~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 433 (790)
+++|.+.+ +| .++.+++|++|++++|.+++.... .. +|+.|++++|.+.
T Consensus 138 L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~lp~~-----~~------------------------~L~~L~L~~n~l~ 186 (454)
T 1jl5_A 138 VSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKKLPDL-----PP------------------------SLEFIAAGNNQLE 186 (454)
T ss_dssp CCSSCCSS-CC-CCTTCTTCCEEECCSSCCSCCCCC-----CT------------------------TCCEEECCSSCCS
T ss_pred CcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcccCCC-----cc------------------------cccEEECcCCcCC
Confidence 55555553 34 355555555555555554432110 11 3334444444333
Q ss_pred CCCCcccccCCCCCEEEccCCccCCCcccccccccccccCCCccCCCCCCcEEEccCCcccccCCcCCCCCCCCCEEEcc
Q 047929 434 PHFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLR 513 (790)
Q Consensus 434 ~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~ 513 (790)
+ +| .+..+++|++|++++|.+.+++ . ..++|++|++++|.+. .+| .+..+++|++|+++
T Consensus 187 ~-l~-~~~~l~~L~~L~l~~N~l~~l~--------------~---~~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~ 245 (454)
T 1jl5_A 187 E-LP-ELQNLPFLTAIYADNNSLKKLP--------------D---LPLSLESIVAGNNILE-ELP-ELQNLPFLTTIYAD 245 (454)
T ss_dssp S-CC-CCTTCTTCCEEECCSSCCSSCC--------------C---CCTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECC
T ss_pred c-Cc-cccCCCCCCEEECCCCcCCcCC--------------C---CcCcccEEECcCCcCC-ccc-ccCCCCCCCEEECC
Confidence 3 22 2455555666666655554321 1 1135666666666655 344 25556666666666
Q ss_pred CCcccccCCccccCCCCCcEEECcCCcccccCchhhhhcCCCCcEEEcCCCcccccCCccccCCCCCcEEEccCCccccc
Q 047929 514 SNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGS 593 (790)
Q Consensus 514 ~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~ 593 (790)
+|++++.. . .+++|+.|++++|.+.+ +|. .+++|++|++++|++++.. . ..++|+.|++++|.+.+
T Consensus 246 ~N~l~~l~-~---~~~~L~~L~l~~N~l~~-l~~----~~~~L~~L~ls~N~l~~l~-~---~~~~L~~L~l~~N~l~~- 311 (454)
T 1jl5_A 246 NNLLKTLP-D---LPPSLEALNVRDNYLTD-LPE----LPQSLTFLDVSENIFSGLS-E---LPPNLYYLNASSNEIRS- 311 (454)
T ss_dssp SSCCSSCC-S---CCTTCCEEECCSSCCSC-CCC----CCTTCCEEECCSSCCSEES-C---CCTTCCEEECCSSCCSE-
T ss_pred CCcCCccc-c---cccccCEEECCCCcccc-cCc----ccCcCCEEECcCCccCccc-C---cCCcCCEEECcCCcCCc-
Confidence 66655422 1 12556666666666552 333 2355666666666665421 1 12456666666665542
Q ss_pred CCcchhccccccccCCccccceeecccccccceeeeeeeeeccchhhhhhcccceeEEEccCccCCCCCCcccccCCCCC
Q 047929 594 VPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGEIPMEVTNLKGLQ 673 (790)
Q Consensus 594 ~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 673 (790)
++. + ++.|++|++++|++.+ +|.. +++|+
T Consensus 312 i~~----~-------------------------------------------~~~L~~L~Ls~N~l~~-lp~~---~~~L~ 340 (454)
T 1jl5_A 312 LCD----L-------------------------------------------PPSLEELNVSNNKLIE-LPAL---PPRLE 340 (454)
T ss_dssp ECC----C-------------------------------------------CTTCCEEECCSSCCSC-CCCC---CTTCC
T ss_pred ccC----C-------------------------------------------cCcCCEEECCCCcccc-cccc---CCcCC
Confidence 110 0 1134556666666653 4432 35666
Q ss_pred EEeCCCCcCCcCCCccccCCCCCCEEeCcCccCcc--ccCccccCC-------------CCCCEEECcCCcccc--cCCC
Q 047929 674 SLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISG--KIPQSMSSL-------------SFLNHLNLSDNKLVG--KIPS 736 (790)
Q Consensus 674 ~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~--~~p~~l~~l-------------~~L~~L~l~~n~l~~--~~p~ 736 (790)
+|++++|.++ .+|. .+++|++|++++|++.+ .+|.++..+ ++|+.|++++|++.+ .+|
T Consensus 341 ~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP- 415 (454)
T 1jl5_A 341 RLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIP- 415 (454)
T ss_dssp EEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC------------------------------
T ss_pred EEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccch-
Confidence 6666666665 3444 34566666666666665 455555555 789999999999987 554
Q ss_pred CCcCCccCCccccCCcccC
Q 047929 737 STQLQSFGASSITGNDLCG 755 (790)
Q Consensus 737 ~~~~~sl~~l~~~~n~l~~ 755 (790)
.+++.+.+.+|.+.+
T Consensus 416 ----~sl~~L~~~~~~~~~ 430 (454)
T 1jl5_A 416 ----ESVEDLRMNSERVVD 430 (454)
T ss_dssp -------------------
T ss_pred ----hhHhheeCcCcccCC
Confidence 467788888875443
No 30
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=9.1e-32 Score=292.11 Aligned_cols=214 Identities=20% Similarity=0.152 Sum_probs=121.2
Q ss_pred ccccCcCCCCCCEEeCCCCCCCCCCcCccccCCCCCCEEeCCCCcccccCCCCCCCCCCCcEEECcCCcccccccCcccc
Q 047929 63 INPALVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHLDLSGSYYELRVEDISWL 142 (790)
Q Consensus 63 ~~~~l~~l~~L~~L~Ls~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~ls~~~~~~~~~~~~~l 142 (790)
.+..++++++|++|++++|.+.+ +| .+..+++|++|++++|.+++ +| ++.+++|++|++++|.+... .+
T Consensus 34 ~~~~~~~l~~L~~L~Ls~n~l~~--~~-~l~~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~~-----~~ 102 (457)
T 3bz5_A 34 DTISEEQLATLTSLDCHNSSITD--MT-GIEKLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTNL-----DV 102 (457)
T ss_dssp SEEEHHHHTTCCEEECCSSCCCC--CT-TGGGCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCC-----CC
T ss_pred cccChhHcCCCCEEEccCCCccc--Ch-hhcccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCcee-----ec
Confidence 33456667777777777777763 34 46677777777777777766 33 67777777777777764432 14
Q ss_pred CCCCCCcEEECCCCCCCCCchhHHhhCCCCCCCEEEccCccccccCcccCcCCCCCCEEECCCCCCCCCCcchhccCCCC
Q 047929 143 AGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSD 222 (790)
Q Consensus 143 ~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~ 222 (790)
+++++|++|++++|.+... .+..+++|++|++++|.+..+ .++.+++|++|++++|...+ .+ .+..+++
T Consensus 103 ~~l~~L~~L~L~~N~l~~l-----~~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~-~~--~~~~l~~ 171 (457)
T 3bz5_A 103 TPLTKLTYLNCDTNKLTKL-----DVSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKIT-KL--DVTPQTQ 171 (457)
T ss_dssp TTCTTCCEEECCSSCCSCC-----CCTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCC-CC--CCTTCTT
T ss_pred CCCCcCCEEECCCCcCCee-----cCCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccc-cc--ccccCCc
Confidence 4555555555555554443 144555566666666555554 24555566666666653322 12 2445555
Q ss_pred CcEEEccCCcCCCCCCccCCCCCCCcEEeCCCCcCCccccccccCCCCCCEEEccCcccccccCcccccCCCCCCEEEcc
Q 047929 223 LVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLS 302 (790)
Q Consensus 223 L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~l~~L~~L~l~ 302 (790)
|++|++++|.+.+ +| +..+++|++|++++|.+.+. .+..+++|+.|++++|++.+ +| +..+++|+.|+++
T Consensus 172 L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip---~~~l~~L~~L~l~ 241 (457)
T 3bz5_A 172 LTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID---VTPLTQLTYFDCS 241 (457)
T ss_dssp CCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC---CTTCTTCSEEECC
T ss_pred CCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC---ccccCCCCEEEee
Confidence 6666666665554 33 55555566666665555543 24555555555555555553 22 3445555555555
Q ss_pred CCCCCC
Q 047929 303 FNELGQ 308 (790)
Q Consensus 303 ~~~~~~ 308 (790)
+|.+.+
T Consensus 242 ~N~l~~ 247 (457)
T 3bz5_A 242 VNPLTE 247 (457)
T ss_dssp SSCCSC
T ss_pred CCcCCC
Confidence 555443
No 31
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=1.6e-31 Score=293.21 Aligned_cols=347 Identities=26% Similarity=0.386 Sum_probs=256.2
Q ss_pred CCCCCCEEEccCcccccccCcccccCCCCCCEEEccCCCCCCCcchhhhhhhccccCCCCEEEccCCccccccchhhccC
Q 047929 267 NFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLF 346 (790)
Q Consensus 267 ~l~~L~~L~l~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l 346 (790)
.+++++.|++.++.+. .++. +..+++|++|++++|.+....+ +..+++|++|++++|.+.+..+ +..+
T Consensus 44 ~l~~l~~L~l~~~~i~-~l~~--~~~l~~L~~L~Ls~n~l~~~~~-------~~~l~~L~~L~l~~n~l~~~~~--~~~l 111 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIK-SIDG--VEYLNNLTQINFSNNQLTDITP-------LKNLTKLVDILMNNNQIADITP--LANL 111 (466)
T ss_dssp HHHTCCEEECCSSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG-------GTTCTTCCEEECCSSCCCCCGG--GTTC
T ss_pred HhccccEEecCCCCCc-cCcc--hhhhcCCCEEECCCCccCCchh-------hhccccCCEEECCCCccccChh--hcCC
Confidence 3567788888888776 3443 6677888888888887765432 3456677777777777765443 6777
Q ss_pred CCCcEEEccCcccCCCCCcCcCCCCCCCEEECcCCcCCCcCChhhhccccccceeecCCCcceeecCCCCCCcccceEEE
Q 047929 347 KNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNFKINSKWVPPFQLLALR 426 (790)
Q Consensus 347 ~~L~~L~L~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~ 426 (790)
++|++|++++|.+.+.. . +..+++|++|++++|.+.+.. .+..+++|+.+++.+
T Consensus 112 ~~L~~L~L~~n~l~~~~-~-~~~l~~L~~L~l~~n~l~~~~---~~~~l~~L~~L~l~~--------------------- 165 (466)
T 1o6v_A 112 TNLTGLTLFNNQITDID-P-LKNLTNLNRLELSSNTISDIS---ALSGLTSLQQLSFGN--------------------- 165 (466)
T ss_dssp TTCCEEECCSSCCCCCG-G-GTTCTTCSEEEEEEEEECCCG---GGTTCTTCSEEEEEE---------------------
T ss_pred CCCCEEECCCCCCCCCh-H-HcCCCCCCEEECCCCccCCCh---hhccCCcccEeecCC---------------------
Confidence 77777777777776442 2 677777777777777765432 245555555555431
Q ss_pred cCCCCCCCCCCcccccCCCCCEEEccCCccCCCcccccccccccccCCCccCCCCCCcEEEccCCcccccCCcCCCCCCC
Q 047929 427 LRSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGTLTS 506 (790)
Q Consensus 427 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~ 506 (790)
.+... ..+..+++|++|++++|.+.++ ..+..+++|+.|++++|.+.+..+ +..+++
T Consensus 166 ----~~~~~--~~~~~l~~L~~L~l~~n~l~~~---------------~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~ 222 (466)
T 1o6v_A 166 ----QVTDL--KPLANLTTLERLDISSNKVSDI---------------SVLAKLTNLESLIATNNQISDITP--LGILTN 222 (466)
T ss_dssp ----SCCCC--GGGTTCTTCCEEECCSSCCCCC---------------GGGGGCTTCSEEECCSSCCCCCGG--GGGCTT
T ss_pred ----cccCc--hhhccCCCCCEEECcCCcCCCC---------------hhhccCCCCCEEEecCCccccccc--ccccCC
Confidence 12111 1266778888888888887653 124567888889998888876544 667888
Q ss_pred CCEEEccCCcccccCCccccCCCCCcEEECcCCcccccCchhhhhcCCCCcEEEcCCCcccccCCccccCCCCCcEEEcc
Q 047929 507 LRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVA 586 (790)
Q Consensus 507 L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ls 586 (790)
|+.|++++|.+++. ..+..+++|+.|++++|.+.+..+ ...+++|++|++++|++++..+ +..+++|+.|+++
T Consensus 223 L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~ 295 (466)
T 1o6v_A 223 LDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP---LSGLTKLTELKLGANQISNISP--LAGLTALTNLELN 295 (466)
T ss_dssp CCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG---GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECC
T ss_pred CCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh---hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcC
Confidence 99999999988764 467788899999999998875443 3478899999999999886544 7788999999999
Q ss_pred CCcccccCCcchhccccccccCCccccceeecccccccceeeeeeeeeccchhhhhhcccceeEEEccCccCCCCCCccc
Q 047929 587 YNRLSGSVPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGEIPMEV 666 (790)
Q Consensus 587 ~n~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~ 666 (790)
+|.+.+..| +.. ++.|+.|++++|.+.+..| +
T Consensus 296 ~n~l~~~~~--~~~--------------------------------------------l~~L~~L~L~~n~l~~~~~--~ 327 (466)
T 1o6v_A 296 ENQLEDISP--ISN--------------------------------------------LKNLTYLTLYFNNISDISP--V 327 (466)
T ss_dssp SSCCSCCGG--GGG--------------------------------------------CTTCSEEECCSSCCSCCGG--G
T ss_pred CCcccCchh--hcC--------------------------------------------CCCCCEEECcCCcCCCchh--h
Confidence 998875333 222 3446789999999986555 7
Q ss_pred ccCCCCCEEeCCCCcCCcCCCccccCCCCCCEEeCcCccCccccCccccCCCCCCEEECcCCccccc
Q 047929 667 TNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLSFLNHLNLSDNKLVGK 733 (790)
Q Consensus 667 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~ 733 (790)
..+++|++|++++|.+++. ..+..+++|+.|++++|++.+..| +..+++|+.|++++|++.+.
T Consensus 328 ~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~ 390 (466)
T 1o6v_A 328 SSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNA 390 (466)
T ss_dssp GGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEECC
T ss_pred ccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccCC
Confidence 8899999999999999865 468899999999999999998776 88999999999999999873
No 32
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.6e-31 Score=294.70 Aligned_cols=323 Identities=19% Similarity=0.199 Sum_probs=203.1
Q ss_pred CEEEccCCccccccchhhccCCCCcEEEccCcccCCCCCcCcCCCCCCCEEECcCCcCCCcCChhhhccccccceeecCC
Q 047929 326 ESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANG 405 (790)
Q Consensus 326 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~ 405 (790)
+.++.+++.++. +|..+ .++++.|++++|.+.+..+..|..+++|++|++++|.+.+..+. .|.++++|+.+++
T Consensus 14 ~~v~c~~~~l~~-ip~~~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~-~~~~l~~L~~L~L-- 87 (477)
T 2id5_A 14 RAVLCHRKRFVA-VPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPG-AFNNLFNLRTLGL-- 87 (477)
T ss_dssp TEEECCSCCCSS-CCSCC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTT-TTTTCTTCCEEEC--
T ss_pred CEEEeCCCCcCc-CCCCC--CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChh-hhhCCccCCEEEC--
Confidence 456666666653 44333 25677777777777766666777777777777777776654332 3444444444444
Q ss_pred CcceeecCCCCCCcccceEEEcCCCCCCCCCCcccccCCCCCEEEccCCccCCCcccccccccccccCCCccCCCCCCcE
Q 047929 406 NSVNFKINSKWVPPFQLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRV 485 (790)
Q Consensus 406 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ 485 (790)
++|.+....+..|..+++|++|++++|.+..+ .+..+..+++|+.
T Consensus 88 ----------------------~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~-------------~~~~~~~l~~L~~ 132 (477)
T 2id5_A 88 ----------------------RSNRLKLIPLGVFTGLSNLTKLDISENKIVIL-------------LDYMFQDLYNLKS 132 (477)
T ss_dssp ----------------------CSSCCCSCCTTSSTTCTTCCEEECTTSCCCEE-------------CTTTTTTCTTCCE
T ss_pred ----------------------CCCcCCccCcccccCCCCCCEEECCCCccccC-------------ChhHccccccCCE
Confidence 44444444444455566666666666665433 2233455566666
Q ss_pred EEccCCcccccCCcCCCCCCCCCEEEccCCcccccCCccccCCCCCcEEECcCCcccccCchhhhhcCCCCcEEEcCCCc
Q 047929 486 LNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNK 565 (790)
Q Consensus 486 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~ 565 (790)
|++++|.+.+..+..|..+++|+.|++++|+++...+..+..+++|+.|++++|.+.+..+.. +..+++|++|++++|+
T Consensus 133 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~-~~~l~~L~~L~l~~~~ 211 (477)
T 2id5_A 133 LEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYS-FKRLYRLKVLEISHWP 211 (477)
T ss_dssp EEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTC-SCSCTTCCEEEEECCT
T ss_pred EECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhh-cccCcccceeeCCCCc
Confidence 666666666555556666666666666666666555555666666666666666665433322 2356666666666666
Q ss_pred ccccCCccccCCCCCcEEEccCCcccccCCcchhccccccccCCccccceeecccccccceeeeeeeeeccchhhhhhcc
Q 047929 566 LHGIFPIQICHLSSLQILDVAYNRLSGSVPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSIL 645 (790)
Q Consensus 566 ~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 645 (790)
..+..+.......+|+.|++++|.+++..+..+..+
T Consensus 212 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l-------------------------------------------- 247 (477)
T 2id5_A 212 YLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHL-------------------------------------------- 247 (477)
T ss_dssp TCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTC--------------------------------------------
T ss_pred cccccCcccccCccccEEECcCCcccccCHHHhcCc--------------------------------------------
Confidence 555555544445567777777776653222233333
Q ss_pred cceeEEEccCccCCCCCCcccccCCCCCEEeCCCCcCCcCCCccccCCCCCCEEeCcCccCccccCccccCCCCCCEEEC
Q 047929 646 NLVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLSFLNHLNL 725 (790)
Q Consensus 646 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l 725 (790)
+.|+.|+|++|.+.+..+..+..+++|++|++++|.+++..|.+|..+++|+.|++++|+++...+..|..+++|++|++
T Consensus 248 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 327 (477)
T 2id5_A 248 VYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLIL 327 (477)
T ss_dssp TTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEEC
T ss_pred cccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEc
Confidence 33457777777777666666777788888888888887777777888888888888888887666667777788888888
Q ss_pred cCCcccccC
Q 047929 726 SDNKLVGKI 734 (790)
Q Consensus 726 ~~n~l~~~~ 734 (790)
++|++....
T Consensus 328 ~~N~l~c~c 336 (477)
T 2id5_A 328 DSNPLACDC 336 (477)
T ss_dssp CSSCEECSG
T ss_pred cCCCccCcc
Confidence 888776543
No 33
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=1.1e-30 Score=286.37 Aligned_cols=345 Identities=24% Similarity=0.331 Sum_probs=197.0
Q ss_pred CCCCCEEEccCccccccCcccCcCCCCCCEEECCCCCCCCCCcchhccCCCCCcEEEccCCcCCCCCCccCCCCCCCcEE
Q 047929 171 LPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYL 250 (790)
Q Consensus 171 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L 250 (790)
+++++.|++.++.+..++ .+..+++|++|++++|.+.+ +|. +..+++|++|++++|.+.+..+ +.++++|++|
T Consensus 45 l~~l~~L~l~~~~i~~l~--~~~~l~~L~~L~Ls~n~l~~--~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L 117 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKSID--GVEYLNNLTQINFSNNQLTD--ITP-LKNLTKLVDILMNNNQIADITP--LANLTNLTGL 117 (466)
T ss_dssp HHTCCEEECCSSCCCCCT--TGGGCTTCCEEECCSSCCCC--CGG-GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred hccccEEecCCCCCccCc--chhhhcCCCEEECCCCccCC--chh-hhccccCCEEECCCCccccChh--hcCCCCCCEE
Confidence 345666666666655543 25556666666666666633 343 5666666666666666664332 6666666666
Q ss_pred eCCCCcCCccccccccCCCCCCEEEccCcccccccCcccccCCCCCCEEEccCCCCCCCcchhhhhhhccccCCCCEEEc
Q 047929 251 DLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQDISEILDIISACAAFELESLFL 330 (790)
Q Consensus 251 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l 330 (790)
++++|.+.+..+ +..+++|++|++++|.+.+ ++. +..+++|+.|++.+ .+.... .+..+++|++|++
T Consensus 118 ~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~~--~~~l~~L~~L~l~~-~~~~~~-------~~~~l~~L~~L~l 184 (466)
T 1o6v_A 118 TLFNNQITDIDP--LKNLTNLNRLELSSNTISD-ISA--LSGLTSLQQLSFGN-QVTDLK-------PLANLTTLERLDI 184 (466)
T ss_dssp ECCSSCCCCCGG--GTTCTTCSEEEEEEEEECC-CGG--GTTCTTCSEEEEEE-SCCCCG-------GGTTCTTCCEEEC
T ss_pred ECCCCCCCCChH--HcCCCCCCEEECCCCccCC-Chh--hccCCcccEeecCC-cccCch-------hhccCCCCCEEEC
Confidence 666666655432 6666666666666666553 222 55666666666643 222111 2345556666666
Q ss_pred cCCccccccchhhccCCCCcEEEccCcccCCCCCcCcCCCCCCCEEECcCCcCCCcCChhhhccccccceeecCCCccee
Q 047929 331 RGCKISGQLTNQLGLFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNF 410 (790)
Q Consensus 331 ~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~ 410 (790)
++|.+... ..+..+++|++|++++|.+.+..+ ++.+++|+.|++++|.+.+.. .+..+++|+.+++++|
T Consensus 185 ~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~---~l~~l~~L~~L~l~~n---- 253 (466)
T 1o6v_A 185 SSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIG---TLASLTNLTDLDLANN---- 253 (466)
T ss_dssp CSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG---GGGGCTTCSEEECCSS----
T ss_pred cCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccch---hhhcCCCCCEEECCCC----
Confidence 66665532 235566667777777666664433 555666777777666655431 2344444444444443
Q ss_pred ecCCCCCCcccceEEEcCCCCCCCCCCcccccCCCCCEEEccCCccCCCcccccccccccccCCCccCCCCCCcEEEccC
Q 047929 411 KINSKWVPPFQLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGN 490 (790)
Q Consensus 411 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 490 (790)
.+.+..+ +..+++|++|++++|.+.+..+ +..+++|+.|++++
T Consensus 254 --------------------~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~---------------~~~l~~L~~L~L~~ 296 (466)
T 1o6v_A 254 --------------------QISNLAP--LSGLTKLTELKLGANQISNISP---------------LAGLTALTNLELNE 296 (466)
T ss_dssp --------------------CCCCCGG--GTTCTTCSEEECCSSCCCCCGG---------------GTTCTTCSEEECCS
T ss_pred --------------------ccccchh--hhcCCCCCEEECCCCccCcccc---------------ccCCCccCeEEcCC
Confidence 3332222 4455666666666666544311 34556666666666
Q ss_pred CcccccCCcCCCCCCCCCEEEccCCcccccCCccccCCCCCcEEECcCCcccccCchhhhhcCCCCcEEEcCCCcccccC
Q 047929 491 NKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIF 570 (790)
Q Consensus 491 n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~ 570 (790)
|.+.+..+ +..+++|+.|++++|++++..+ +..+++|+.|++++|.+.+. + .+ ..+++|++|++++|++++..
T Consensus 297 n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~-~l-~~l~~L~~L~l~~n~l~~~~ 369 (466)
T 1o6v_A 297 NQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV-S-SL-ANLTNINWLSAGHNQISDLT 369 (466)
T ss_dssp SCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC-G-GG-TTCTTCCEEECCSSCCCBCG
T ss_pred CcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc-h-hh-ccCCCCCEEeCCCCccCccc
Confidence 66664322 5556666666666666665543 55666666666666666532 2 22 35666677777777666554
Q ss_pred CccccCCCCCcEEEccCCcccc
Q 047929 571 PIQICHLSSLQILDVAYNRLSG 592 (790)
Q Consensus 571 ~~~~~~l~~L~~L~ls~n~l~~ 592 (790)
| +..+++|+.|++++|.+++
T Consensus 370 ~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 370 P--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp G--GTTCTTCCEEECCCEEEEC
T ss_pred h--hhcCCCCCEEeccCCcccC
Confidence 4 5666677777777766664
No 34
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.98 E-value=3.2e-31 Score=287.81 Aligned_cols=361 Identities=19% Similarity=0.190 Sum_probs=215.5
Q ss_pred CCCCCCCCCCCcEEECcCCcccccccCccccCCCCCCcEEECCCCCCCCCchhHHhhCCCCCCCEEEccCccccccCccc
Q 047929 112 IPHQLGNLSNLMHLDLSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLA 191 (790)
Q Consensus 112 lp~~l~~l~~L~~L~ls~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 191 (790)
.+..++++++|++|++++|.+... ..++.++ +|++|++++|.+..++
T Consensus 34 ~~~~~~~l~~L~~L~Ls~n~l~~~----~~l~~l~--------------------------~L~~L~Ls~n~l~~~~--- 80 (457)
T 3bz5_A 34 DTISEEQLATLTSLDCHNSSITDM----TGIEKLT--------------------------GLTKLICTSNNITTLD--- 80 (457)
T ss_dssp SEEEHHHHTTCCEEECCSSCCCCC----TTGGGCT--------------------------TCSEEECCSSCCSCCC---
T ss_pred cccChhHcCCCCEEEccCCCcccC----hhhcccC--------------------------CCCEEEccCCcCCeEc---
Confidence 344566777777777777765432 1234444 4444444455444431
Q ss_pred CcCCCCCCEEECCCCCCCCCCcchhccCCCCCcEEEccCCcCCCCCCccCCCCCCCcEEeCCCCcCCccccccccCCCCC
Q 047929 192 SANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDL 271 (790)
Q Consensus 192 l~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L 271 (790)
++.+++|++|++++|.+.+ +| +..+++|++|++++|.+.+ +| ++.+++|++|++++|.+++. .+..+++|
T Consensus 81 ~~~l~~L~~L~Ls~N~l~~--~~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L 150 (457)
T 3bz5_A 81 LSQNTNLTYLACDSNKLTN--LD--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI---DVSHNTQL 150 (457)
T ss_dssp CTTCTTCSEEECCSSCCSC--CC--CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC---CCTTCTTC
T ss_pred cccCCCCCEEECcCCCCce--ee--cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCcccee---ccccCCcC
Confidence 4455555555555555533 22 4455555555555555553 22 55555555555555555542 14455555
Q ss_pred CEEEccCcccccccCcccccCCCCCCEEEccCCCCCCCcchhhhhhhccccCCCCEEEccCCccccccchhhccCCCCcE
Q 047929 272 EYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHT 351 (790)
Q Consensus 272 ~~L~l~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 351 (790)
++|++++|...+.+ .+..+++|+.|++++|.+.... +..+++|+.|++++|.+++. .+..+++|+.
T Consensus 151 ~~L~l~~n~~~~~~---~~~~l~~L~~L~ls~n~l~~l~--------l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~ 216 (457)
T 3bz5_A 151 TELDCHLNKKITKL---DVTPQTQLTTLDCSFNKITELD--------VSQNKLLNRLNCDTNNITKL---DLNQNIQLTF 216 (457)
T ss_dssp CEEECTTCSCCCCC---CCTTCTTCCEEECCSSCCCCCC--------CTTCTTCCEEECCSSCCSCC---CCTTCTTCSE
T ss_pred CEEECCCCCccccc---ccccCCcCCEEECCCCccceec--------cccCCCCCEEECcCCcCCee---ccccCCCCCE
Confidence 55555555433333 1445556666666666554421 23445666666666666543 2556677777
Q ss_pred EEccCcccCCCCCcCcCCCCCCCEEECcCCcCCCcCChhhhccccccceeecCCCcceeecCCCCCCcccceEEEcCCCC
Q 047929 352 LALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNFKINSKWVPPFQLLALRLRSCH 431 (790)
Q Consensus 352 L~L~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 431 (790)
|++++|++.+ +| ++.+++|+.|++++|.+.+.. .+.+++|+.+++..+ +++.+++++|.
T Consensus 217 L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~----~~~l~~L~~L~l~~n--------------~L~~L~l~~n~ 275 (457)
T 3bz5_A 217 LDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELD----VSTLSKLTTLHCIQT--------------DLLEIDLTHNT 275 (457)
T ss_dssp EECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC----CTTCTTCCEEECTTC--------------CCSCCCCTTCT
T ss_pred EECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcC----HHHCCCCCEEeccCC--------------CCCEEECCCCc
Confidence 7777777765 44 666777777777777766543 345566666665543 35566677777
Q ss_pred CCCCCCcccccCCCCCEEEccCCccCCCcccccccccccccCCCccCCCCCCcEEEccCCcccccCCcCCCCCCCCCEEE
Q 047929 432 LGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLN 511 (790)
Q Consensus 432 ~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 511 (790)
..+.+| +..+++|+.|++++|...+..| ...++|+.|+++ .+++|+.|+
T Consensus 276 ~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~----------------~~~~~L~~L~l~-------------~~~~L~~L~ 324 (457)
T 3bz5_A 276 QLIYFQ--AEGCRKIKELDVTHNTQLYLLD----------------CQAAGITELDLS-------------QNPKLVYLY 324 (457)
T ss_dssp TCCEEE--CTTCTTCCCCCCTTCTTCCEEE----------------CTTCCCSCCCCT-------------TCTTCCEEE
T ss_pred cCCccc--ccccccCCEEECCCCcccceec----------------cCCCcceEechh-------------hcccCCEEE
Confidence 666555 4567888888888887543221 122344444333 336788888
Q ss_pred ccCCcccccCCccccCCCCCcEEECcCCcccccCchhhhhcCCCCcEEEcCCCcccccCCccccCCCCCcEEEccCCccc
Q 047929 512 LRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLS 591 (790)
Q Consensus 512 L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~ 591 (790)
+++|++++. .+..+++|+.|++++|.+.+ ++.|..|++++|.+.+. +.+.+|+.+++++|.++
T Consensus 325 L~~N~l~~l---~l~~l~~L~~L~l~~N~l~~---------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~ 387 (457)
T 3bz5_A 325 LNNTELTEL---DVSHNTKLKSLSCVNAHIQD---------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLT 387 (457)
T ss_dssp CTTCCCSCC---CCTTCTTCSEEECCSSCCCB---------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEE
T ss_pred CCCCccccc---ccccCCcCcEEECCCCCCCC---------ccccccccccCCcEEec-----ceeeecCccccccCcEE
Confidence 888888874 37778888888888888763 34566677788877764 24456777888888888
Q ss_pred ccCCcch
Q 047929 592 GSVPKCI 598 (790)
Q Consensus 592 ~~~p~~l 598 (790)
|.+|..+
T Consensus 388 g~ip~~~ 394 (457)
T 3bz5_A 388 IAVSPDL 394 (457)
T ss_dssp EECCTTC
T ss_pred EEcChhH
Confidence 8888654
No 35
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.98 E-value=1.6e-31 Score=276.12 Aligned_cols=261 Identities=31% Similarity=0.544 Sum_probs=225.9
Q ss_pred CCCCEEEccCCccCCCcccccccccccccCCCccCCCCCCcEEEccC-CcccccCCcCCCCCCCCCEEEccCCcccccCC
Q 047929 444 KHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGN-NKFTGSIPISMGTLTSLRSLNLRSNRLSGIIP 522 (790)
Q Consensus 444 ~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~ 522 (790)
.+++.|++++|.+.+. ..+|..+..+++|++|++++ |.+.+.+|..+..+++|++|++++|.+++..|
T Consensus 50 ~~l~~L~L~~~~l~~~-----------~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p 118 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKP-----------YPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIP 118 (313)
T ss_dssp CCEEEEEEECCCCSSC-----------EECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECC
T ss_pred ceEEEEECCCCCccCC-----------cccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCC
Confidence 4677778887776530 03445567788888888884 88887888888888999999999999888888
Q ss_pred ccccCCCCCcEEECcCCcccccCchhhhhcCCCCcEEEcCCCcccccCCccccCCC-CCcEEEccCCcccccCCcchhcc
Q 047929 523 VPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLS-SLQILDVAYNRLSGSVPKCINNF 601 (790)
Q Consensus 523 ~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~-~L~~L~ls~n~l~~~~p~~l~~l 601 (790)
..+..+++|++|++++|.+.+.+|..+. .+++|++|++++|++++..|..+..++ +|+.|++++|.+.+.+|..+..+
T Consensus 119 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l 197 (313)
T 1ogq_A 119 DFLSQIKTLVTLDFSYNALSGTLPPSIS-SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL 197 (313)
T ss_dssp GGGGGCTTCCEEECCSSEEESCCCGGGG-GCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGC
T ss_pred HHHhCCCCCCEEeCCCCccCCcCChHHh-cCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCC
Confidence 8888899999999999998888887775 789999999999999888888888887 99999999999988888766544
Q ss_pred ccccccCCccccceeecccccccceeeeeeeeeccchhhhhhcccceeEEEccCccCCCCCCcccccCCCCCEEeCCCCc
Q 047929 602 TAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNS 681 (790)
Q Consensus 602 ~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 681 (790)
+ |+.|++++|.+.+..|..+..+++|++|++++|.
T Consensus 198 ~---------------------------------------------L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 232 (313)
T 1ogq_A 198 N---------------------------------------------LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNS 232 (313)
T ss_dssp C---------------------------------------------CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSE
T ss_pred c---------------------------------------------ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCc
Confidence 3 4689999999998889999999999999999999
Q ss_pred CCcCCCccccCCCCCCEEeCcCccCccccCccccCCCCCCEEECcCCcccccCCCCCcCCccCCccccCC-cccCCCCCC
Q 047929 682 FIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLSFLNHLNLSDNKLVGKIPSSTQLQSFGASSITGN-DLCGAPLSN 760 (790)
Q Consensus 682 l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~sl~~l~~~~n-~l~~~~~~~ 760 (790)
+++..|. +..+++|++|++++|++.+.+|..+..+++|++|++++|++.+.+|..+.+.+|+.+++.+| .+||.|++.
T Consensus 233 l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~~p~~~ 311 (313)
T 1ogq_A 233 LAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLPA 311 (313)
T ss_dssp ECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSSC
T ss_pred eeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCccCCCCCC
Confidence 9866665 88899999999999999999999999999999999999999999999989999999999999 699999888
Q ss_pred CC
Q 047929 761 CT 762 (790)
Q Consensus 761 c~ 762 (790)
|+
T Consensus 312 C~ 313 (313)
T 1ogq_A 312 CT 313 (313)
T ss_dssp CC
T ss_pred CC
Confidence 84
No 36
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.97 E-value=1.7e-30 Score=278.48 Aligned_cols=278 Identities=19% Similarity=0.207 Sum_probs=144.7
Q ss_pred CCCCCCCCCCcc-cCceeecCCCCcEEEEEcCCCCCCccccccCcCCCCCCEEeCCCCCCCCCCcCcc-ccCCCCCCEEe
Q 047929 25 LASWIGDVDCCE-WGGVVCNNITGHVLELNLERSELGGKINPALVDLKHLNLLDLSGNDFQGIQIPEY-IGSMDNLRYLN 102 (790)
Q Consensus 25 ~~~w~~~~~~~~-~~~~~c~~~~~~v~~L~L~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~l~~~-~~~l~~L~~L~ 102 (790)
+++|....+||. |.+..|. .+.+++............-..++++++|+++++.+. .+|.. +..+++|++|+
T Consensus 3 ~~~~~~~~~C~~~~~~~~c~-----~~~~~i~~~~~~~~~~~~~~~l~~l~~l~l~~~~l~--~l~~~~~~~l~~L~~L~ 75 (390)
T 3o6n_A 3 VKPRQPEYKCIDSNLQYDCV-----FYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR--KLPAALLDSFRQVELLN 75 (390)
T ss_dssp ----CCEECBCC------EE-----EESCEECSSCCCCEESCSSGGGCCCSEEEEESCEES--EECTHHHHHCCCCSEEE
T ss_pred cCCCCCccceehhhhhhccc-----eeeeeeecccccccccccccccCCceEEEecCCchh--hCChhHhcccccCcEEE
Confidence 577876577764 5555553 122222222222122222345688888998888887 34544 67888888888
Q ss_pred CCCCcccccCCCCCCCCCCCcEEECcCCcccccccCccccCCCCCCcEEECCCCCCCCCchhHHhhCCCCCCCEEEccCc
Q 047929 103 LSGAGFAGWIPHQLGNLSNLMHLDLSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSC 182 (790)
Q Consensus 103 Ls~~~~~~~lp~~l~~l~~L~~L~ls~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 182 (790)
+++|.+.+..+.++..+++|++|++++|.+
T Consensus 76 L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l-------------------------------------------------- 105 (390)
T 3o6n_A 76 LNDLQIEEIDTYAFAYAHTIQKLYMGFNAI-------------------------------------------------- 105 (390)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECCSSCC--------------------------------------------------
T ss_pred CCCCcccccChhhccCCCCcCEEECCCCCC--------------------------------------------------
Confidence 888888876666788888888888876643
Q ss_pred cccccCcccCcCCCCCCEEECCCCCCCCCCcchh-ccCCCCCcEEEccCCcCCCCCCccCCCCCCCcEEeCCCCcCCccc
Q 047929 183 KLHHFAPLASANFSSLNALDLSGNLFGKTSIPSW-VFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTI 261 (790)
Q Consensus 183 ~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~lp~~-l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~ 261 (790)
..+++..++++++|++|++++|.+. .+|.. +..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+.
T Consensus 106 --~~~~~~~~~~l~~L~~L~L~~n~l~--~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~- 180 (390)
T 3o6n_A 106 --RYLPPHVFQNVPLLTVLVLERNDLS--SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV- 180 (390)
T ss_dssp --CCCCTTTTTTCTTCCEEECCSSCCC--CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC-
T ss_pred --CcCCHHHhcCCCCCCEEECCCCccC--cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc-
Confidence 2333444555555555555555553 34433 24556666666666666555555566666666666666665543
Q ss_pred cccccCCCCCCEEEccCcccccccCcccccCCCCCCEEEccCCCCCCCcchhhhhhhccccCCCCEEEccCCccccccch
Q 047929 262 SDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTN 341 (790)
Q Consensus 262 ~~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 341 (790)
.+..+++|+.|++++|.+.+ +...++|++|++++|.+...... ..++|+.|++++|.+++. .
T Consensus 181 --~~~~l~~L~~L~l~~n~l~~------~~~~~~L~~L~l~~n~l~~~~~~--------~~~~L~~L~l~~n~l~~~--~ 242 (390)
T 3o6n_A 181 --DLSLIPSLFHANVSYNLLST------LAIPIAVEELDASHNSINVVRGP--------VNVELTILKLQHNNLTDT--A 242 (390)
T ss_dssp --CGGGCTTCSEEECCSSCCSE------EECCSSCSEEECCSSCCCEEECC--------CCSSCCEEECCSSCCCCC--G
T ss_pred --ccccccccceeecccccccc------cCCCCcceEEECCCCeeeecccc--------ccccccEEECCCCCCccc--H
Confidence 23445556666666655432 22233455555555554332111 123444444444444321 2
Q ss_pred hhccCCCCcEEEccCcccCCCCCcCcCCCCCCCEEECcCCc
Q 047929 342 QLGLFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNN 382 (790)
Q Consensus 342 ~l~~l~~L~~L~L~~~~i~~~~~~~~~~l~~L~~L~l~~n~ 382 (790)
.+..+++|++|++++|.+.+..|..+..+++|+.|++++|.
T Consensus 243 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 283 (390)
T 3o6n_A 243 WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR 283 (390)
T ss_dssp GGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSC
T ss_pred HHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCc
Confidence 33444444444444444443334444444444444444443
No 37
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.97 E-value=6.9e-30 Score=281.70 Aligned_cols=260 Identities=20% Similarity=0.196 Sum_probs=135.3
Q ss_pred CCCEEEccCCccccccchhhccCCCCcEEEccCcccCCCCCcCcCCCCCCCEEECcCCcCCCcCChhhhccccccceeec
Q 047929 324 ELESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYA 403 (790)
Q Consensus 324 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l 403 (790)
+++.|++++|.+++..+..|..+++|++|++++|.+.+..|..|..+++|++|++++|.+...... .|.++++|+.+++
T Consensus 33 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L 111 (477)
T 2id5_A 33 ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLG-VFTGLSNLTKLDI 111 (477)
T ss_dssp TCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTT-SSTTCTTCCEEEC
T ss_pred CCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcc-cccCCCCCCEEEC
Confidence 455555555555544455555556666666666655555555555666666666666655543322 3444555555555
Q ss_pred CCCcceeecCCCCCCcccceEEEcCCCCCCCCCCcccccCCCCCEEEccCCccCCCcccccccccccccCCCccCCCCCC
Q 047929 404 NGNSVNFKINSKWVPPFQLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDL 483 (790)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~L 483 (790)
++|.+....+..+..+++|+.|++++|.+....+..|..+++|++|++++|.+..+.+. .+..+++|
T Consensus 112 s~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-------------~l~~l~~L 178 (477)
T 2id5_A 112 SENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTE-------------ALSHLHGL 178 (477)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHH-------------HHTTCTTC
T ss_pred CCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChh-------------HhcccCCC
Confidence 54444444444444445555555555555444444555555555555555555443221 22344555
Q ss_pred cEEEccCCcccccCCcCCCCCCCCCEEEccCCcccccCCccccCCCCCcEEECcCCcccccCchhhhhcCCCCcEEEcCC
Q 047929 484 RVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRS 563 (790)
Q Consensus 484 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~ 563 (790)
+.|++++|.+.+..+..|..+++|+.|++++|...+..+.......+|+.|++++|.+. .+|...+..+++|++|++++
T Consensus 179 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~ 257 (477)
T 2id5_A 179 IVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSY 257 (477)
T ss_dssp CEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCC-SCCHHHHTTCTTCCEEECCS
T ss_pred cEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCccc-ccCHHHhcCccccCeeECCC
Confidence 55555555555544445555555555555555544443333333345555555555554 34433334555555555555
Q ss_pred CcccccCCccccCCCCCcEEEccCCcccccCCcch
Q 047929 564 NKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCI 598 (790)
Q Consensus 564 n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l 598 (790)
|++++..+..+..+++|+.|++++|.+.+..|..+
T Consensus 258 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 292 (477)
T 2id5_A 258 NPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAF 292 (477)
T ss_dssp SCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTB
T ss_pred CcCCccChhhccccccCCEEECCCCccceECHHHh
Confidence 55555545555555555555555555554444433
No 38
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.97 E-value=2.1e-29 Score=265.61 Aligned_cols=304 Identities=24% Similarity=0.347 Sum_probs=240.7
Q ss_pred CCcEEEEEcCCCCCCccccccCcCCCCCCEEeCCCCCCCCCCcCccccCCCCCCEEeCCCCcccccCCCCCCCCCCCcEE
Q 047929 46 TGHVLELNLERSELGGKINPALVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHL 125 (790)
Q Consensus 46 ~~~v~~L~L~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L 125 (790)
..++++|+++++.+.. + +.+..+++|++|++++|.+.+ ++. +..+++|++|++++|.+++ ++ ++..+++|++|
T Consensus 43 l~~L~~L~l~~~~i~~-~-~~~~~~~~L~~L~l~~n~i~~--~~~-~~~l~~L~~L~L~~n~i~~-~~-~~~~l~~L~~L 115 (347)
T 4fmz_A 43 LESITKLVVAGEKVAS-I-QGIEYLTNLEYLNLNGNQITD--ISP-LSNLVKLTNLYIGTNKITD-IS-ALQNLTNLREL 115 (347)
T ss_dssp HTTCSEEECCSSCCCC-C-TTGGGCTTCCEEECCSSCCCC--CGG-GTTCTTCCEEECCSSCCCC-CG-GGTTCTTCSEE
T ss_pred cccccEEEEeCCcccc-c-hhhhhcCCccEEEccCCcccc--chh-hhcCCcCCEEEccCCcccC-ch-HHcCCCcCCEE
Confidence 4688999999998863 3 358889999999999998884 444 8899999999999998887 44 68999999999
Q ss_pred ECcCCcccccccCccccCCCCCCcEEECCCCCCCCCchhHHhhCCCCCCCEEEccCccccccCcccCcCCCCCCEEECCC
Q 047929 126 DLSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSG 205 (790)
Q Consensus 126 ~ls~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~ 205 (790)
++++|.+...+ .+..+++|++|+++++....... .+..+++|++|++++|.+....+ +..+++|++|++++
T Consensus 116 ~l~~n~i~~~~----~~~~l~~L~~L~l~~n~~~~~~~---~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~ 186 (347)
T 4fmz_A 116 YLNEDNISDIS----PLANLTKMYSLNLGANHNLSDLS---PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNY 186 (347)
T ss_dssp ECTTSCCCCCG----GGTTCTTCCEEECTTCTTCCCCG---GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTT
T ss_pred ECcCCcccCch----hhccCCceeEEECCCCCCccccc---chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccC
Confidence 99998765433 37788999999999886665533 47888999999999988877655 77888999999999
Q ss_pred CCCCCCCcchhccCCCCCcEEEccCCcCCCCCCccCCCCCCCcEEeCCCCcCCccccccccCCCCCCEEEccCccccccc
Q 047929 206 NLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTI 285 (790)
Q Consensus 206 ~~l~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~ 285 (790)
|.+.+ ++. +..+++|+.|++++|.+.+..+ +..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+ +
T Consensus 187 n~l~~--~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~ 258 (347)
T 4fmz_A 187 NQIED--ISP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD-I 258 (347)
T ss_dssp SCCCC--CGG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-C
T ss_pred Ccccc--ccc-ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCC-C
Confidence 88844 444 7788889999999988875433 7888899999999998876544 7888899999999988774 3
Q ss_pred CcccccCCCCCCEEEccCCCCCCCcchhhhhhhccccCCCCEEEccCCccccccchhhccCCCCcEEEccCcccCCCCCc
Q 047929 286 SSIGLENLTFIKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVSGPLPP 365 (790)
Q Consensus 286 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~~~~~ 365 (790)
+ .+..+++|+.|++++|.+... + .+..+++|+.|++++|.+.+..+..+..+++|++|++++|++++..|
T Consensus 259 ~--~~~~l~~L~~L~l~~n~l~~~-~------~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~- 328 (347)
T 4fmz_A 259 N--AVKDLTKLKMLNVGSNQISDI-S------VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP- 328 (347)
T ss_dssp G--GGTTCTTCCEEECCSSCCCCC-G------GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG-
T ss_pred h--hHhcCCCcCEEEccCCccCCC-h------hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC-
Confidence 2 377888899999988887664 1 34567788888888888887777788888888888888888876554
Q ss_pred CcCCCCCCCEEECcCCcCC
Q 047929 366 ASGELSSLTYLDLSNNNLN 384 (790)
Q Consensus 366 ~~~~l~~L~~L~l~~n~~~ 384 (790)
++.+++|+.|++++|.++
T Consensus 329 -~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 329 -LASLSKMDSADFANQVIK 346 (347)
T ss_dssp -GGGCTTCSEESSSCC---
T ss_pred -hhhhhccceeehhhhccc
Confidence 777888888888888764
No 39
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.97 E-value=1.2e-29 Score=271.83 Aligned_cols=217 Identities=21% Similarity=0.256 Sum_probs=134.4
Q ss_pred cCCCCCCcEEEccCCcccccCCcCCCCCCCCCEEEccCCcccccCCccccCCCCCcEEECcCCcccccCchhhhhcCCCC
Q 047929 477 WMNWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRL 556 (790)
Q Consensus 477 ~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L 556 (790)
+..+++|++|++++|.+++. .+..+++|+.|++++|.+... ...++|+.|++++|.+.. +|.. ..++|
T Consensus 161 ~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~~-----~~~~~L~~L~l~~n~l~~-~~~~---~~~~L 228 (390)
T 3o6n_A 161 FQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLSTL-----AIPIAVEELDASHNSINV-VRGP---VNVEL 228 (390)
T ss_dssp TSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSEE-----ECCSSCSEEECCSSCCCE-EECC---CCSSC
T ss_pred ccCCCCCCEEECCCCcCCcc---ccccccccceeeccccccccc-----CCCCcceEEECCCCeeee-cccc---ccccc
Confidence 34445555555555555432 133445555566655555432 223456666666665542 2322 23566
Q ss_pred cEEEcCCCcccccCCccccCCCCCcEEEccCCcccccCCcchhccccccccCCccccceeecccccccceeeeeeeeecc
Q 047929 557 RILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKG 636 (790)
Q Consensus 557 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 636 (790)
++|++++|++++. ..+..+++|++|++++|.+.+..|..+..+++
T Consensus 229 ~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~--------------------------------- 273 (390)
T 3o6n_A 229 TILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQR--------------------------------- 273 (390)
T ss_dssp CEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSS---------------------------------
T ss_pred cEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHcccccc---------------------------------
Confidence 6666666666542 34566666777777777666555554444333
Q ss_pred chhhhhhcccceeEEEccCccCCCCCCcccccCCCCCEEeCCCCcCCcCCCccccCCCCCCEEeCcCccCccccCccccC
Q 047929 637 FMVEYNSILNLVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSS 716 (790)
Q Consensus 637 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~ 716 (790)
|++|++++|++.+ +|..+..+++|++|++++|+++ .+|..+..+++|+.|++++|++... | +..
T Consensus 274 -----------L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~ 337 (390)
T 3o6n_A 274 -----------LERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LST 337 (390)
T ss_dssp -----------CCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCT
T ss_pred -----------CCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chh
Confidence 3466777776663 4555567889999999999887 5677788889999999999998854 3 677
Q ss_pred CCCCCEEECcCCcccccCCCCCcCCccCCccccCC-cccCCC
Q 047929 717 LSFLNHLNLSDNKLVGKIPSSTQLQSFGASSITGN-DLCGAP 757 (790)
Q Consensus 717 l~~L~~L~l~~n~l~~~~p~~~~~~sl~~l~~~~n-~l~~~~ 757 (790)
+++|++|++++|++...-. ...+..+....+.++ ..|..+
T Consensus 338 ~~~L~~L~l~~N~~~~~~~-~~~~~~~~~~~~~~~~~~c~~~ 378 (390)
T 3o6n_A 338 HHTLKNLTLSHNDWDCNSL-RALFRNVARPAVDDADQHCKID 378 (390)
T ss_dssp TCCCSEEECCSSCEEHHHH-HHHTTTCCTTTBCCCCSCCCTT
T ss_pred hccCCEEEcCCCCccchhH-HHHHHHHHhhcccccCceeccc
Confidence 8899999999999876422 123445555555555 555543
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=2e-29 Score=284.98 Aligned_cols=281 Identities=20% Similarity=0.227 Sum_probs=152.6
Q ss_pred CCCCCCCCCCCCCCcc----cCceeecCCCCcEEEEEcCCCCCCccccccCcCCCCCCEEeCCCCCCCCCCcCccccCCC
Q 047929 21 PSNHLASWIGDVDCCE----WGGVVCNNITGHVLELNLERSELGGKINPALVDLKHLNLLDLSGNDFQGIQIPEYIGSMD 96 (790)
Q Consensus 21 ~~~~~~~w~~~~~~~~----~~~~~c~~~~~~v~~L~L~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~l~~~~~~l~ 96 (790)
.+..+++|....+||. |..+.|.. + ++-..... .....-..+.+++.++++++.+... -+..+..++
T Consensus 5 ~~~~l~~~~~~~~C~~~~~~~~c~~~~~---~---i~~~~~~~--~~~~~~l~l~~l~~l~l~~~~l~~l-p~~~~~~l~ 75 (597)
T 3oja_B 5 QRYNVKPRQPEYKCIDSNLQYDCVFYDV---H---IDMQTQDV--YFGFEDITLNNQKIVTFKNSTMRKL-PAALLDSFR 75 (597)
T ss_dssp ------CCCSEECCCCC--CCSEEECSC---E---ECSSCCCC--EESCSSGGGCCCSEEEESSCEESEE-CTHHHHHCC
T ss_pred ccccccCCCCCCcCcccCcCceeEecCc---e---eccccccc--ccCcccccCCCceEEEeeCCCCCCc-CHHHHccCC
Confidence 3456788976567773 55555531 1 11111111 1111223467888888888887743 234467788
Q ss_pred CCCEEeCCCCcccccCCCCCCCCCCCcEEECcCCcccccccCccccCCCCCCcEEECCCCCCCCCchhHHhhCCCCCCCE
Q 047929 97 NLRYLNLSGAGFAGWIPHQLGNLSNLMHLDLSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKV 176 (790)
Q Consensus 97 ~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~ls~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~ 176 (790)
+|++|++++|.+.+..|..++.+++|++|++++|.+
T Consensus 76 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l-------------------------------------------- 111 (597)
T 3oja_B 76 QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAI-------------------------------------------- 111 (597)
T ss_dssp CCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC--------------------------------------------
T ss_pred CCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcC--------------------------------------------
Confidence 888888888888886667788888888888776643
Q ss_pred EEccCccccccCcccCcCCCCCCEEECCCCCCCCCCcchh-ccCCCCCcEEEccCCcCCCCCCccCCCCCCCcEEeCCCC
Q 047929 177 LKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSW-VFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYN 255 (790)
Q Consensus 177 L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~lp~~-l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~ 255 (790)
..+++..|+++++|++|++++|.+. .+|.. +..+++|++|++++|.+.+..|..|..+++|++|++++|
T Consensus 112 --------~~~~~~~~~~l~~L~~L~L~~n~l~--~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N 181 (597)
T 3oja_B 112 --------RYLPPHVFQNVPLLTVLVLERNDLS--SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN 181 (597)
T ss_dssp --------CCCCTTTTTTCTTCCEEECCSSCCC--CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTS
T ss_pred --------CCCCHHHHcCCCCCCEEEeeCCCCC--CCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCC
Confidence 3333444555556666666666553 23333 345666666666666666555556666666666666666
Q ss_pred cCCccccccccCCCCCCEEEccCcccccccCcccccCCCCCCEEEccCCCCCCCcchhhhhhhccccCCCCEEEccCCcc
Q 047929 256 QFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKI 335 (790)
Q Consensus 256 ~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 335 (790)
.+.+.. +..+++|+.|++++|.+.+ +...++|+.|++++|.+...... ..++|+.|++++|.+
T Consensus 182 ~l~~~~---~~~l~~L~~L~l~~n~l~~------l~~~~~L~~L~ls~n~l~~~~~~--------~~~~L~~L~L~~n~l 244 (597)
T 3oja_B 182 RLTHVD---LSLIPSLFHANVSYNLLST------LAIPIAVEELDASHNSINVVRGP--------VNVELTILKLQHNNL 244 (597)
T ss_dssp CCSBCC---GGGCTTCSEEECCSSCCSE------EECCTTCSEEECCSSCCCEEECS--------CCSCCCEEECCSSCC
T ss_pred CCCCcC---hhhhhhhhhhhcccCcccc------ccCCchhheeeccCCcccccccc--------cCCCCCEEECCCCCC
Confidence 665432 3345566666666665542 22334555666665555432221 113455555555544
Q ss_pred ccccchhhccCCCCcEEEccCcccCCCCCcCcCCCCCCCEEECcCCcC
Q 047929 336 SGQLTNQLGLFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNL 383 (790)
Q Consensus 336 ~~~~~~~l~~l~~L~~L~L~~~~i~~~~~~~~~~l~~L~~L~l~~n~~ 383 (790)
++ +..+..+++|+.|++++|.+.+..|..++.+++|+.|++++|.+
T Consensus 245 ~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 290 (597)
T 3oja_B 245 TD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL 290 (597)
T ss_dssp CC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCC
T ss_pred CC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCC
Confidence 43 23344455555555555555444444444444444444444443
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=2.9e-29 Score=283.69 Aligned_cols=332 Identities=20% Similarity=0.233 Sum_probs=188.1
Q ss_pred CCCEEEccCCccccccchhhccCCCCcEEEccCcccCCCCCcCcCCCCCCCEEECcCCcCCCcCChhhhccccccceeec
Q 047929 324 ELESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYA 403 (790)
Q Consensus 324 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l 403 (790)
+++.++++++.+....+..+..+++|+.|++++|.+.+..+..|+.+++|+.|++++|.+.+.++. .|+++++|+.|++
T Consensus 52 ~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L 130 (597)
T 3oja_B 52 NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPH-VFQNVPLLTVLVL 130 (597)
T ss_dssp CCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTT-TTTTCTTCCEEEC
T ss_pred CceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHH-HHcCCCCCCEEEe
Confidence 344444444444433333344445555555555554444444444555555555555544433222 2233333333333
Q ss_pred CCCcceeecCCCCCCcccceEEEcCCCCCCCCCCcccccCCCCCEEEccCCccCCCcccccccccccccCCCccCCCCCC
Q 047929 404 NGNSVNFKINSKWVPPFQLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDL 483 (790)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~L 483 (790)
++|.+ ....+..|..+++|++|++++|.+..++ |..+..+++|
T Consensus 131 ~~n~l------------------------~~l~~~~~~~l~~L~~L~Ls~N~l~~~~-------------~~~~~~l~~L 173 (597)
T 3oja_B 131 ERNDL------------------------SSLPRGIFHNTPKLTTLSMSNNNLERIE-------------DDTFQATTSL 173 (597)
T ss_dssp CSSCC------------------------CCCCTTTTTTCTTCCEEECCSSCCCBCC-------------TTTTTTCTTC
T ss_pred eCCCC------------------------CCCCHHHhccCCCCCEEEeeCCcCCCCC-------------hhhhhcCCcC
Confidence 33322 2222222344455555555555544322 2233445555
Q ss_pred cEEEccCCcccccCCcCCCCCCCCCEEEccCCcccccCCccccCCCCCcEEECcCCcccccCchhhhhcCCCCcEEEcCC
Q 047929 484 RVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRS 563 (790)
Q Consensus 484 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~ 563 (790)
+.|++++|.+++. + +..+++|+.|++++|.+.+. ...++|+.|++++|.+.. ++.. ..++|+.|++++
T Consensus 174 ~~L~L~~N~l~~~-~--~~~l~~L~~L~l~~n~l~~l-----~~~~~L~~L~ls~n~l~~-~~~~---~~~~L~~L~L~~ 241 (597)
T 3oja_B 174 QNLQLSSNRLTHV-D--LSLIPSLFHANVSYNLLSTL-----AIPIAVEELDASHNSINV-VRGP---VNVELTILKLQH 241 (597)
T ss_dssp CEEECTTSCCSBC-C--GGGCTTCSEEECCSSCCSEE-----ECCTTCSEEECCSSCCCE-EECS---CCSCCCEEECCS
T ss_pred cEEECcCCCCCCc-C--hhhhhhhhhhhcccCccccc-----cCCchhheeeccCCcccc-cccc---cCCCCCEEECCC
Confidence 5555555555532 1 33445566666666655432 233456666666665542 2222 135667777777
Q ss_pred CcccccCCccccCCCCCcEEEccCCcccccCCcchhccccccccCCccccceeecccccccceeeeeeeeeccchhhhhh
Q 047929 564 NKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNS 643 (790)
Q Consensus 564 n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 643 (790)
|.+++ +..+..+++|+.|++++|.+.+..|..+.++++
T Consensus 242 n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~---------------------------------------- 279 (597)
T 3oja_B 242 NNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQR---------------------------------------- 279 (597)
T ss_dssp SCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSS----------------------------------------
T ss_pred CCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccC----------------------------------------
Confidence 76664 245666777777777777776666655554443
Q ss_pred cccceeEEEccCccCCCCCCcccccCCCCCEEeCCCCcCCcCCCccccCCCCCCEEeCcCccCccccCccccCCCCCCEE
Q 047929 644 ILNLVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLSFLNHL 723 (790)
Q Consensus 644 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L 723 (790)
|+.|+|++|.+.+ +|..+..+++|++|+|++|.++ .+|..+..+++|+.|++++|.+... | +..+++|+.|
T Consensus 280 ----L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L 350 (597)
T 3oja_B 280 ----LERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNL 350 (597)
T ss_dssp ----CCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEE
T ss_pred ----CCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCCCEE
Confidence 3467777777764 4555677889999999999988 6777788889999999999998854 3 6677899999
Q ss_pred ECcCCcccccCCCCCcCCccCCccccCC-cccCCC
Q 047929 724 NLSDNKLVGKIPSSTQLQSFGASSITGN-DLCGAP 757 (790)
Q Consensus 724 ~l~~n~l~~~~p~~~~~~sl~~l~~~~n-~l~~~~ 757 (790)
++++|++.+..+ ...+..+....+.++ ..|+.+
T Consensus 351 ~l~~N~~~~~~~-~~~~~~~~~~~~~~~~~~C~~~ 384 (597)
T 3oja_B 351 TLSHNDWDCNSL-RALFRNVARPAVDDADQHCKID 384 (597)
T ss_dssp ECCSSCEEHHHH-HHHTTTCCTTTBCCCCCCCCTT
T ss_pred EeeCCCCCChhH-HHHHHHHhhhccccccccCCcc
Confidence 999999886532 223445555556666 677654
No 42
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.97 E-value=1.5e-28 Score=259.22 Aligned_cols=307 Identities=24% Similarity=0.307 Sum_probs=232.4
Q ss_pred cCcCCCCCCEEeCCCCCCCCCCcCccccCCCCCCEEeCCCCcccccCCCCCCCCCCCcEEECcCCcccccccCccccCCC
Q 047929 66 ALVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHLDLSGSYYELRVEDISWLAGP 145 (790)
Q Consensus 66 ~l~~l~~L~~L~Ls~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~ls~~~~~~~~~~~~~l~~l 145 (790)
.+..+++|++|+++++.+.. ++. +..+++|++|++++|.+++ ++. +..+++|++|++++|.+.. +..+.++
T Consensus 39 ~~~~l~~L~~L~l~~~~i~~--~~~-~~~~~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~L~~n~i~~----~~~~~~l 109 (347)
T 4fmz_A 39 TQEELESITKLVVAGEKVAS--IQG-IEYLTNLEYLNLNGNQITD-ISP-LSNLVKLTNLYIGTNKITD----ISALQNL 109 (347)
T ss_dssp CHHHHTTCSEEECCSSCCCC--CTT-GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC----CGGGTTC
T ss_pred cchhcccccEEEEeCCcccc--chh-hhhcCCccEEEccCCcccc-chh-hhcCCcCCEEEccCCcccC----chHHcCC
Confidence 45678999999999999984 444 8889999999999999987 444 9999999999999997654 3457888
Q ss_pred CCCcEEECCCCCCCCCchhHHhhCCCCCCCEEEccCccccccCcccCcCCCCCCEEECCCCCCCCCCcchhccCCCCCcE
Q 047929 146 SLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVF 225 (790)
Q Consensus 146 ~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~L~~ 225 (790)
++|++|+++++.+...+. +..+++|++|++++|......+ .+..+++|++|++++|.+.. ++. +..+++|++
T Consensus 110 ~~L~~L~l~~n~i~~~~~----~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~--~~~-~~~l~~L~~ 181 (347)
T 4fmz_A 110 TNLRELYLNEDNISDISP----LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKD--VTP-IANLTDLYS 181 (347)
T ss_dssp TTCSEEECTTSCCCCCGG----GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCC--CGG-GGGCTTCSE
T ss_pred CcCCEEECcCCcccCchh----hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCC--chh-hccCCCCCE
Confidence 889999998888777643 7788888888888886544433 37788888888888888743 343 677888888
Q ss_pred EEccCCcCCCCCCccCCCCCCCcEEeCCCCcCCccccccccCCCCCCEEEccCcccccccCcccccCCCCCCEEEccCCC
Q 047929 226 LDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNE 305 (790)
Q Consensus 226 L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~l~~L~~L~l~~~~ 305 (790)
|++++|.+.+. +. +..+++|+.|++++|.+.+..+ +..+++|++|++++|.+.+ ++. +..+++|++|++++|.
T Consensus 182 L~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~-~~~--~~~l~~L~~L~l~~n~ 254 (347)
T 4fmz_A 182 LSLNYNQIEDI-SP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITD-LSP--LANLSQLTWLEIGTNQ 254 (347)
T ss_dssp EECTTSCCCCC-GG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CGG--GTTCTTCCEEECCSSC
T ss_pred EEccCCccccc-cc-ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCC-Ccc--hhcCCCCCEEECCCCc
Confidence 88888887743 33 7788888888888888876544 7778888888888888763 332 6778888888888887
Q ss_pred CCCCcchhhhhhhccccCCCCEEEccCCccccccchhhccCCCCcEEEccCcccCCCCCcCcCCCCCCCEEECcCCcCCC
Q 047929 306 LGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNG 385 (790)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~ 385 (790)
+... + .+..+++|++|++++|.+.+. ..+..+++|++|++++|.+.+..+..++.+++|+.|++++|.+++
T Consensus 255 l~~~-~------~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 325 (347)
T 4fmz_A 255 ISDI-N------AVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITD 325 (347)
T ss_dssp CCCC-G------GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCC
T ss_pred cCCC-h------hHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCcccc
Confidence 7653 1 345677888888888877754 346777888888888888877677777778888888888888776
Q ss_pred cCChhhhccccccceeecCCCcc
Q 047929 386 MISEIHFGNLTELAFFYANGNSV 408 (790)
Q Consensus 386 ~~~~~~~~~l~~L~~l~l~~~~~ 408 (790)
..+ +..+++|+.+++++|.+
T Consensus 326 ~~~---~~~l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 326 IRP---LASLSKMDSADFANQVI 345 (347)
T ss_dssp CGG---GGGCTTCSEESSSCC--
T ss_pred ccC---hhhhhccceeehhhhcc
Confidence 543 55666666666666544
No 43
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.96 E-value=1.1e-29 Score=263.84 Aligned_cols=276 Identities=17% Similarity=0.183 Sum_probs=215.8
Q ss_pred ChHHHHHHHHHHhhcC-CCCCCCCCCC----CCCCCCcccCceeecC--------CCCcEEEEEcCCCCCCccccccCcC
Q 047929 3 CLESERVALIKLKQDF-KDPSNHLASW----IGDVDCCEWGGVVCNN--------ITGHVLELNLERSELGGKINPALVD 69 (790)
Q Consensus 3 ~~~~~~~~~~~~~~~~-~~~~~~~~~w----~~~~~~~~~~~~~c~~--------~~~~v~~L~L~~~~~~~~~~~~l~~ 69 (790)
+.++|+.||++||+.+ .|+.+....| ....++|.|.|+.|.. ...+|++|+|+++.++ .+|+.+++
T Consensus 24 ~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~~l~~ 102 (328)
T 4fcg_A 24 ALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFR 102 (328)
T ss_dssp CCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCSCGGG
T ss_pred cCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcChhhhh
Confidence 3456899999999988 5787778889 4457889999999942 3478999999999998 78888999
Q ss_pred CCCCCEEeCCCCCCCCCCcCccccCCCCCCEEeCCCCcccccCCCCCCCCCCCcEEECcCCcccc-cccCccccCCCCCC
Q 047929 70 LKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHLDLSGSYYEL-RVEDISWLAGPSLL 148 (790)
Q Consensus 70 l~~L~~L~Ls~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~ls~~~~~~-~~~~~~~l~~l~~L 148 (790)
+++|++|+|++|.+. .+|+.++.+++|++|++++|.+. .+|..++++++|++|++++|.+.. .+..+..
T Consensus 103 l~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~------- 172 (328)
T 4fcg_A 103 LSHLQHMTIDAAGLM--ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLAS------- 172 (328)
T ss_dssp GTTCSEEEEESSCCC--CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEE-------
T ss_pred CCCCCEEECCCCCcc--chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhh-------
Confidence 999999999999998 58999999999999999999999 489999999999999999875332 1111110
Q ss_pred cEEECCCCCCCCCchhHHhhCCCCCCCEEEccCccccccCcccCcCCCCCCEEECCCCCCCCCCcchhccCCCCCcEEEc
Q 047929 149 EHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDL 228 (790)
Q Consensus 149 ~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L~l 228 (790)
..+ ...+.++++|++|++++|.+..+ +..+..+++|++|++++|.+. .+|..+..+++|++|++
T Consensus 173 --~~~-----------~~~~~~l~~L~~L~L~~n~l~~l-p~~l~~l~~L~~L~L~~N~l~--~l~~~l~~l~~L~~L~L 236 (328)
T 4fcg_A 173 --TDA-----------SGEHQGLVNLQSLRLEWTGIRSL-PASIANLQNLKSLKIRNSPLS--ALGPAIHHLPKLEELDL 236 (328)
T ss_dssp --EC------------CCCEEESTTCCEEEEEEECCCCC-CGGGGGCTTCCEEEEESSCCC--CCCGGGGGCTTCCEEEC
T ss_pred --ccc-----------hhhhccCCCCCEEECcCCCcCcc-hHhhcCCCCCCEEEccCCCCC--cCchhhccCCCCCEEEC
Confidence 000 01345677788888888877744 445777888888888888774 46667777888888888
Q ss_pred cCCcCCCCCCccCCCCCCCcEEeCCCCcCCccccccccCCCCCCEEEccCcccccccCcccccCCCCCCEEEccCCCC
Q 047929 229 SSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNEL 306 (790)
Q Consensus 229 ~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~ 306 (790)
++|.+.+.+|..+..+++|++|++++|.+.+..|..+..+++|++|++++|++.+.+|.. +.++++|+.+++..+.+
T Consensus 237 s~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~-l~~L~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 237 RGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSL-IAQLPANCIILVPPHLQ 313 (328)
T ss_dssp TTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGG-GGGSCTTCEEECCGGGS
T ss_pred cCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHH-HhhccCceEEeCCHHHH
Confidence 888777777877888888888888888777777777888888888888888877777766 77778888777766544
No 44
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=5.1e-27 Score=245.17 Aligned_cols=248 Identities=23% Similarity=0.261 Sum_probs=178.5
Q ss_pred cEEEEEcCCCCCCccccccCcCCCCCCEEeCCCCCCCCCCcCccccCCCCCCEEeCCCCcccccCCCCCCCCCCCcEEEC
Q 047929 48 HVLELNLERSELGGKINPALVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHLDL 127 (790)
Q Consensus 48 ~v~~L~L~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~l 127 (790)
++++++++++.++ .+|..+. +++++|++++|.+.+. .+..+.++++|++|++++|.+++..|.+++.+++|++|++
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEI-KDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCB-CTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEe-ChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 4567777877776 5565554 6899999999999865 4557899999999999999999877999999999999999
Q ss_pred cCCcccccccCccccCCCCCCcEEECCCCCCCCCchhHHhhCCCCCCCEEEccCccccc--cCcccCcCCCCCCEEECCC
Q 047929 128 SGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHH--FAPLASANFSSLNALDLSG 205 (790)
Q Consensus 128 s~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~L~~ 205 (790)
++|.+...+..+ .++|++|+++++.+..... ..+.++++|++|++++|.+.. ..+..+..+++|++|++++
T Consensus 108 s~n~l~~l~~~~-----~~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~ 180 (330)
T 1xku_A 108 SKNQLKELPEKM-----PKTLQELRVHENEITKVRK--SVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIAD 180 (330)
T ss_dssp CSSCCSBCCSSC-----CTTCCEEECCSSCCCBBCH--HHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCS
T ss_pred CCCcCCccChhh-----cccccEEECCCCcccccCH--hHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCC
Confidence 999876443322 1577777777777665521 256677777777777777654 5556677777777777777
Q ss_pred CCCCCCCcchhccCCCCCcEEEccCCcCCCCCCccCCCCCCCcEEeCCCCcCCccccccccCCCCCCEEEccCccccccc
Q 047929 206 NLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTI 285 (790)
Q Consensus 206 ~~l~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~ 285 (790)
|.+. .+|..+. ++|++|++++|.+.+..|..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+. .+
T Consensus 181 n~l~--~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~l 255 (330)
T 1xku_A 181 TNIT--TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KV 255 (330)
T ss_dssp SCCC--SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SC
T ss_pred Cccc--cCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cC
Confidence 7763 3555443 67777777777777666667777777777777777777666666777777777777777766 44
Q ss_pred CcccccCCCCCCEEEccCCCCCCCcch
Q 047929 286 SSIGLENLTFIKTLDLSFNELGQDISE 312 (790)
Q Consensus 286 ~~~~l~~l~~L~~L~l~~~~~~~~~~~ 312 (790)
|.. +..+++|++|++++|.+......
T Consensus 256 p~~-l~~l~~L~~L~l~~N~i~~~~~~ 281 (330)
T 1xku_A 256 PGG-LADHKYIQVVYLHNNNISAIGSN 281 (330)
T ss_dssp CTT-TTTCSSCCEEECCSSCCCCCCTT
T ss_pred Chh-hccCCCcCEEECCCCcCCccChh
Confidence 444 56667777777777766654443
No 45
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.95 E-value=6.3e-27 Score=244.49 Aligned_cols=289 Identities=19% Similarity=0.250 Sum_probs=181.1
Q ss_pred CCcEEEccCcccCCCCCcCcCCCCCCCEEECcCCcCCCcCChhhhccccccceeecCCCcceeecCCCCCCcccceEEEc
Q 047929 348 NLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNFKINSKWVPPFQLLALRL 427 (790)
Q Consensus 348 ~L~~L~L~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l 427 (790)
+++.++++++.+. .+|..+ .+.++.|++++|.+++.... .+.. +++|++|++
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~--~~~l~~L~L~~n~i~~~~~~-~~~~------------------------l~~L~~L~L 83 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDL--PPDTALLDLQNNKITEIKDG-DFKN------------------------LKNLHTLIL 83 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSC--CTTCCEEECCSSCCCCBCTT-TTTT------------------------CTTCCEEEC
T ss_pred CCeEEEecCCCcc-ccCccC--CCCCeEEECCCCcCCEeChh-hhcc------------------------CCCCCEEEC
Confidence 6788888888776 455443 26788888888877654332 2333 344445555
Q ss_pred CCCCCCCCCCcccccCCCCCEEEccCCccCCCcccccccccccccCCCccCCCCCCcEEEccCCcccccCCcCCCCCCCC
Q 047929 428 RSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGTLTSL 507 (790)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L 507 (790)
++|.+.+..|..+..+++|++|++++|.+..++. .+ .++|++|++++|.+++..+..+..+++|
T Consensus 84 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~--------------~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L 147 (330)
T 1xku_A 84 INNKISKISPGAFAPLVKLERLYLSKNQLKELPE--------------KM--PKTLQELRVHENEITKVRKSVFNGLNQM 147 (330)
T ss_dssp CSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCS--------------SC--CTTCCEEECCSSCCCBBCHHHHTTCTTC
T ss_pred CCCcCCeeCHHHhcCCCCCCEEECCCCcCCccCh--------------hh--cccccEEECCCCcccccCHhHhcCCccc
Confidence 5555555556666777777777777777654321 11 1567777777777776555556777777
Q ss_pred CEEEccCCcccc--cCCccccCCCCCcEEECcCCcccccCchhhhhcCCCCcEEEcCCCcccccCCccccCCCCCcEEEc
Q 047929 508 RSLNLRSNRLSG--IIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDV 585 (790)
Q Consensus 508 ~~L~L~~n~i~~--~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l 585 (790)
+.|++++|.+.. ..+..+..+++|++|++++|.+. .+|..+ .++|++|++++|++++..+..+..+++|+.|++
T Consensus 148 ~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~---~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 223 (330)
T 1xku_A 148 IVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL---PPSLTELHLDGNKITKVDAASLKGLNNLAKLGL 223 (330)
T ss_dssp CEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSC---CTTCSEEECTTSCCCEECTGGGTTCTTCCEEEC
T ss_pred cEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-cCCccc---cccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 777777777643 45566677777777777777766 455443 266777777777777666666777777777777
Q ss_pred cCCcccccCCcchhccccccccCCccccceeecccccccceeeeeeeeeccchhhhhhcccceeEEEccCccCCCCCCcc
Q 047929 586 AYNRLSGSVPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGEIPME 665 (790)
Q Consensus 586 s~n~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 665 (790)
++|.+.+..+..+..+++ |++|++++|.+. .+|..
T Consensus 224 s~n~l~~~~~~~~~~l~~--------------------------------------------L~~L~L~~N~l~-~lp~~ 258 (330)
T 1xku_A 224 SFNSISAVDNGSLANTPH--------------------------------------------LRELHLNNNKLV-KVPGG 258 (330)
T ss_dssp CSSCCCEECTTTGGGSTT--------------------------------------------CCEEECCSSCCS-SCCTT
T ss_pred CCCcCceeChhhccCCCC--------------------------------------------CCEEECCCCcCc-cCChh
Confidence 777766554444433332 346777777666 56666
Q ss_pred cccCCCCCEEeCCCCcCCcCCCccccC------CCCCCEEeCcCccCcc--ccCccccCCCCCCEEECcCCc
Q 047929 666 VTNLKGLQSLNLSHNSFIGKIPETIGN------MRSIESLDLSGNQISG--KIPQSMSSLSFLNHLNLSDNK 729 (790)
Q Consensus 666 ~~~l~~L~~L~L~~n~l~~~~p~~l~~------l~~L~~L~l~~n~l~~--~~p~~l~~l~~L~~L~l~~n~ 729 (790)
+..+++|++|++++|++++..+..|.. .++|+.|++++|++.. ..|..|..+.+++.+++++|+
T Consensus 259 l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 259 LADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp TTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred hccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 666677777777777766555555432 2566667777766643 345566666666666666663
No 46
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.95 E-value=3.7e-27 Score=246.31 Aligned_cols=293 Identities=19% Similarity=0.175 Sum_probs=193.0
Q ss_pred cEEEEEcCCCCCCccccccCcCCCCCCEEeCCCCCCCCCCcCccccCCCCCCEEeCCCCcccccCCCCCCCCCCCcEEEC
Q 047929 48 HVLELNLERSELGGKINPALVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHLDL 127 (790)
Q Consensus 48 ~v~~L~L~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~l 127 (790)
++++++++++.++ .+|..+. ++|++|++++|.+.+. .++.+.++++|++|++++|.+++..|.+++++++|++|++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISEL-RKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCcc-CHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 4567788888876 5666553 6899999999998854 4668999999999999999999877889999999999999
Q ss_pred cCCcccccccCccccCCCCCCcEEECCCCCCCCCchhHHhhCCCCCCCEEEccCccccc--cCcccCcCCCCCCEEECCC
Q 047929 128 SGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHH--FAPLASANFSSLNALDLSG 205 (790)
Q Consensus 128 s~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~L~~ 205 (790)
++|.+...+..+. ++|++|+++++.+...+. ..+..+++|++|++++|.+.. ..+..+..+ +|++|++++
T Consensus 110 ~~n~l~~l~~~~~-----~~L~~L~l~~n~i~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~ 181 (332)
T 2ft3_A 110 SKNHLVEIPPNLP-----SSLVELRIHDNRIRKVPK--GVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISE 181 (332)
T ss_dssp CSSCCCSCCSSCC-----TTCCEEECCSSCCCCCCS--GGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCS
T ss_pred CCCcCCccCcccc-----ccCCEEECCCCccCccCH--hHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcC
Confidence 9998764433221 677777777777665521 146667777777777777653 455566666 777777777
Q ss_pred CCCCCCCcchhccCCCCCcEEEccCCcCCCCCCccCCCCCCCcEEeCCCCcCCccccccccCCCCCCEEEccCccccccc
Q 047929 206 NLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTI 285 (790)
Q Consensus 206 ~~l~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~ 285 (790)
|.+.. +|..+. ++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+. .+
T Consensus 182 n~l~~--l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~l 256 (332)
T 2ft3_A 182 AKLTG--IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RV 256 (332)
T ss_dssp SBCSS--CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BC
T ss_pred CCCCc--cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ec
Confidence 76633 555443 56777777777776666566777777777777777776666666666777777777777666 44
Q ss_pred CcccccCCCCCCEEEccCCCCCCCcchhhhhhhccccCCCCEEEccCCccccccchhhccCCCCcEEEccCcccC--CCC
Q 047929 286 SSIGLENLTFIKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVS--GPL 363 (790)
Q Consensus 286 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~--~~~ 363 (790)
|.. +..+++|+.|++++|.+.......+. ... .....+.|+.+++++|.+. +..
T Consensus 257 p~~-l~~l~~L~~L~l~~N~l~~~~~~~~~-----~~~------------------~~~~~~~l~~L~l~~N~~~~~~~~ 312 (332)
T 2ft3_A 257 PAG-LPDLKLLQVVYLHTNNITKVGVNDFC-----PVG------------------FGVKRAYYNGISLFNNPVPYWEVQ 312 (332)
T ss_dssp CTT-GGGCTTCCEEECCSSCCCBCCTTSSS-----CSS------------------CCSSSCCBSEEECCSSSSCGGGSC
T ss_pred Chh-hhcCccCCEEECCCCCCCccChhHcc-----ccc------------------cccccccccceEeecCcccccccC
Confidence 444 56666666666666666554433111 000 0001245566666666554 345
Q ss_pred CcCcCCCCCCCEEECcCC
Q 047929 364 PPASGELSSLTYLDLSNN 381 (790)
Q Consensus 364 ~~~~~~l~~L~~L~l~~n 381 (790)
|..+..++.|+.+++++|
T Consensus 313 ~~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 313 PATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp GGGGTTBCCSTTEEC---
T ss_pred cccccccchhhhhhcccc
Confidence 555666666666666655
No 47
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.95 E-value=4.2e-27 Score=245.91 Aligned_cols=288 Identities=20% Similarity=0.266 Sum_probs=195.1
Q ss_pred CCcEEEccCcccCCCCCcCcCCCCCCCEEECcCCcCCCcCChhhhccccccceeecCCCcceeecCCCCCCcccceEEEc
Q 047929 348 NLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNFKINSKWVPPFQLLALRL 427 (790)
Q Consensus 348 ~L~~L~L~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l 427 (790)
+++.++++++.+. .+|..+ .+.++.|++++|.+.+.. +..+..+++|+.|++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~-------------------------~~~~~~l~~L~~L~L 85 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEI--SPDTTLLDLQNNDISELR-------------------------KDDFKGLQHLYALVL 85 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCEEC-------------------------TTTTTTCTTCCEEEC
T ss_pred cCCEEECCCCCcc-ccCCCC--CCCCeEEECCCCcCCccC-------------------------HhHhhCCCCCcEEEC
Confidence 5677777777665 444433 256667777666655432 223344455555566
Q ss_pred CCCCCCCCCCcccccCCCCCEEEccCCccCCCcccccccccccccCCCccCCCCCCcEEEccCCcccccCCcCCCCCCCC
Q 047929 428 RSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGTLTSL 507 (790)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L 507 (790)
++|.+.+..|..+..+++|++|++++|.+..+++ .+. ++|++|++++|.+.+..+..|..+++|
T Consensus 86 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~--------------~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L 149 (332)
T 2ft3_A 86 VNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPP--------------NLP--SSLVELRIHDNRIRKVPKGVFSGLRNM 149 (332)
T ss_dssp CSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCS--------------SCC--TTCCEEECCSSCCCCCCSGGGSSCSSC
T ss_pred CCCccCccCHhHhhCcCCCCEEECCCCcCCccCc--------------ccc--ccCCEEECCCCccCccCHhHhCCCccC
Confidence 6666655566667777888888888887764322 111 678888888888876555567778888
Q ss_pred CEEEccCCcccc--cCCccccCCCCCcEEECcCCcccccCchhhhhcCCCCcEEEcCCCcccccCCccccCCCCCcEEEc
Q 047929 508 RSLNLRSNRLSG--IIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDV 585 (790)
Q Consensus 508 ~~L~L~~n~i~~--~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l 585 (790)
+.|++++|.++. ..+..+..+ +|+.|++++|.+. .+|..+ .++|++|++++|++++..+..+..+++|+.|++
T Consensus 150 ~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~-~l~~~~---~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L 224 (332)
T 2ft3_A 150 NCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT-GIPKDL---PETLNELHLDHNKIQAIELEDLLRYSKLYRLGL 224 (332)
T ss_dssp CEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS-SCCSSS---CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBC
T ss_pred CEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC-ccCccc---cCCCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 888888888753 556666666 8888888888876 455543 267888888888887776677778888888888
Q ss_pred cCCcccccCCcchhccccccccCCccccceeecccccccceeeeeeeeeccchhhhhhcccceeEEEccCccCCCCCCcc
Q 047929 586 AYNRLSGSVPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGEIPME 665 (790)
Q Consensus 586 s~n~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 665 (790)
++|.+.+..+..+..+++ |++|++++|++. .+|..
T Consensus 225 ~~N~l~~~~~~~~~~l~~--------------------------------------------L~~L~L~~N~l~-~lp~~ 259 (332)
T 2ft3_A 225 GHNQIRMIENGSLSFLPT--------------------------------------------LRELHLDNNKLS-RVPAG 259 (332)
T ss_dssp CSSCCCCCCTTGGGGCTT--------------------------------------------CCEEECCSSCCC-BCCTT
T ss_pred CCCcCCcCChhHhhCCCC--------------------------------------------CCEEECCCCcCe-ecChh
Confidence 888877655555544333 457888888777 67777
Q ss_pred cccCCCCCEEeCCCCcCCcCCCccccCC------CCCCEEeCcCccCc--cccCccccCCCCCCEEECcCCc
Q 047929 666 VTNLKGLQSLNLSHNSFIGKIPETIGNM------RSIESLDLSGNQIS--GKIPQSMSSLSFLNHLNLSDNK 729 (790)
Q Consensus 666 ~~~l~~L~~L~L~~n~l~~~~p~~l~~l------~~L~~L~l~~n~l~--~~~p~~l~~l~~L~~L~l~~n~ 729 (790)
+..+++|++|++++|++++..+..|... .+|+.|++++|++. ...|..|..+++|+.+++++|+
T Consensus 260 l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 260 LPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp GGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred hhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 7778888888888888776655555442 56778888888776 5566777777888888887774
No 48
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.95 E-value=1.5e-31 Score=294.04 Aligned_cols=64 Identities=17% Similarity=0.180 Sum_probs=36.6
Q ss_pred CcEEEEEcCCCCCCcccccc-CcCCCCCCEEeCCCCCCCCC---CcCccccCCCCCCEEeCCCCcccc
Q 047929 47 GHVLELNLERSELGGKINPA-LVDLKHLNLLDLSGNDFQGI---QIPEYIGSMDNLRYLNLSGAGFAG 110 (790)
Q Consensus 47 ~~v~~L~L~~~~~~~~~~~~-l~~l~~L~~L~Ls~~~~~~~---~l~~~~~~l~~L~~L~Ls~~~~~~ 110 (790)
.++++|+++++.+++..... +..+++|++|++++|.+.+. .+++.+..+++|++|++++|.+.+
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 70 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGD 70 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHH
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCCh
Confidence 45666666666665433322 55666666666666665532 234555556666666666666554
No 49
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.95 E-value=1.1e-30 Score=287.10 Aligned_cols=368 Identities=18% Similarity=0.135 Sum_probs=208.8
Q ss_pred CCCCEEEccCCCCCCCcchhhhhhhccccCCCCEEEccCCccccc----cchhhccCCCCcEEEccCcccCCCCCcCc-C
Q 047929 294 TFIKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQ----LTNQLGLFKNLHTLALSDNSVSGPLPPAS-G 368 (790)
Q Consensus 294 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~L~~~~i~~~~~~~~-~ 368 (790)
++|++|+++++.+...... . .+..+++|++|++++|.+... ++..+..+++|++|++++|.+.+..+..+ .
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~--~--~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~ 78 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWA--E--LLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQ 78 (461)
T ss_dssp EEEEEEEEESCCCCHHHHH--H--HHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHH
T ss_pred ccceehhhhhcccCchhHH--H--HHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHH
Confidence 4677888888877543321 0 245667888888888887642 35556677888888888887764322222 2
Q ss_pred CCC----CCCEEECcCCcCCCcC---ChhhhccccccceeecCCCcceeecCCCCCCcccceEEEcCCCCCCCCCCcccc
Q 047929 369 ELS----SLTYLDLSNNNLNGMI---SEIHFGNLTELAFFYANGNSVNFKINSKWVPPFQLLALRLRSCHLGPHFPSWLH 441 (790)
Q Consensus 369 ~l~----~L~~L~l~~n~~~~~~---~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 441 (790)
.++ +|++|++++|.+.... ....+..+++|+.+++++|.+.......+.. ....
T Consensus 79 ~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~-------------------~l~~ 139 (461)
T 1z7x_W 79 GLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCE-------------------GLLD 139 (461)
T ss_dssp TTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHH-------------------HHTS
T ss_pred HHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHH-------------------HHhc
Confidence 233 6888888888766422 1123455556666555555443211110000 0011
Q ss_pred cCCCCCEEEccCCccCCCcccccccccccccCCCccCCCCCCcEEEccCCcccccCCcCCC-----CCCCCCEEEccCCc
Q 047929 442 SQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMG-----TLTSLRSLNLRSNR 516 (790)
Q Consensus 442 ~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-----~l~~L~~L~L~~n~ 516 (790)
..++|++|++++|.+.+.... .++..+..+++|++|++++|.+.+..+..+. ..++|++|++++|.
T Consensus 140 ~~~~L~~L~L~~n~l~~~~~~---------~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 210 (461)
T 1z7x_W 140 PQCRLEKLQLEYCSLSAASCE---------PLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCG 210 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHH---------HHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSC
T ss_pred CCCcceEEECCCCCCCHHHHH---------HHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCC
Confidence 234566666666665543211 1122234456666666666665543222221 23466777777776
Q ss_pred cccc----CCccccCCCCCcEEECcCCcccccCchh----hhhcCCCCcEEEcCCCccccc----CCccccCCCCCcEEE
Q 047929 517 LSGI----IPVPFENCSQLVALDMGENEFVGNIPTW----MGERFSRLRILNLRSNKLHGI----FPIQICHLSSLQILD 584 (790)
Q Consensus 517 i~~~----~~~~l~~l~~L~~L~l~~n~~~~~~~~~----~~~~~~~L~~L~L~~n~~~~~----~~~~~~~l~~L~~L~ 584 (790)
++.. .+..+..+++|++|++++|.+.+..... +...+++|++|++++|++++. ++..+..+++|++|+
T Consensus 211 l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~ 290 (461)
T 1z7x_W 211 VTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELS 290 (461)
T ss_dssp CBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEE
T ss_pred CcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEE
Confidence 6643 2344556677777777777665432211 212356777777777776643 344455567777777
Q ss_pred ccCCcccccCCcchhccccccccCCccccceeecccccccceeeeeeeeeccchhhhhhcccceeEEEccCccCCCC---
Q 047929 585 VAYNRLSGSVPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGE--- 661 (790)
Q Consensus 585 ls~n~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~--- 661 (790)
+++|.+.+..+..+...- ....+.|++|++++|.+++.
T Consensus 291 Ls~n~i~~~~~~~l~~~l---------------------------------------~~~~~~L~~L~L~~n~l~~~~~~ 331 (461)
T 1z7x_W 291 LAGNELGDEGARLLCETL---------------------------------------LEPGCQLESLWVKSCSFTAACCS 331 (461)
T ss_dssp CTTCCCHHHHHHHHHHHH---------------------------------------TSTTCCCCEEECTTSCCBGGGHH
T ss_pred CCCCCCchHHHHHHHHHh---------------------------------------ccCCccceeeEcCCCCCchHHHH
Confidence 777766533222221100 00123466777777777643
Q ss_pred -CCcccccCCCCCEEeCCCCcCCcCCCccccC-----CCCCCEEeCcCccCcc----ccCccccCCCCCCEEECcCCccc
Q 047929 662 -IPMEVTNLKGLQSLNLSHNSFIGKIPETIGN-----MRSIESLDLSGNQISG----KIPQSMSSLSFLNHLNLSDNKLV 731 (790)
Q Consensus 662 -~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~-----l~~L~~L~l~~n~l~~----~~p~~l~~l~~L~~L~l~~n~l~ 731 (790)
++..+..+++|++|++++|.+++..+..+.. .++|++|++++|.+.. .+|..+..+++|++|++++|++.
T Consensus 332 ~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~ 411 (461)
T 1z7x_W 332 HFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG 411 (461)
T ss_dssp HHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred HHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCC
Confidence 3445566677778888777776544433332 5678888888887775 56677777777888888888776
Q ss_pred c
Q 047929 732 G 732 (790)
Q Consensus 732 ~ 732 (790)
+
T Consensus 412 ~ 412 (461)
T 1z7x_W 412 D 412 (461)
T ss_dssp H
T ss_pred H
Confidence 4
No 50
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.94 E-value=6.4e-26 Score=239.15 Aligned_cols=292 Identities=22% Similarity=0.214 Sum_probs=191.8
Q ss_pred CCCCCCCCCCcccCceeecCCCCcEEEEEcCCCCCCccccccCcCCCCCCEEeCCCCCCCCCCcCccccCCCCCCEEeCC
Q 047929 25 LASWIGDVDCCEWGGVVCNNITGHVLELNLERSELGGKINPALVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLS 104 (790)
Q Consensus 25 ~~~w~~~~~~~~~~~~~c~~~~~~v~~L~L~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~l~~~~~~l~~L~~L~Ls 104 (790)
...|..+..+|.|.++ |+ .+++.++ .+|..+. ++|++|++++|.+.+. .++.+.++++|++|+++
T Consensus 20 ~~~~~~~~~~C~~~~~-c~----------~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~-~~~~~~~l~~L~~L~L~ 84 (353)
T 2z80_A 20 EESSNQASLSCDRNGI-CK----------GSSGSLN-SIPSGLT--EAVKSLDLSNNRITYI-SNSDLQRCVNLQALVLT 84 (353)
T ss_dssp -------CCEECTTSE-EE----------CCSTTCS-SCCTTCC--TTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECT
T ss_pred ccCCCccCCCCCCCeE-ee----------CCCCCcc-ccccccc--ccCcEEECCCCcCccc-CHHHhccCCCCCEEECC
Confidence 3445444567888876 53 4566665 5565554 5899999999998854 34478899999999999
Q ss_pred CCcccccCCCCCCCCCCCcEEECcCCcccccccCccccCCCCCCcEEECCCCCCCCCchhHHhhCCCCCCCEEEccCccc
Q 047929 105 GAGFAGWIPHQLGNLSNLMHLDLSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKL 184 (790)
Q Consensus 105 ~~~~~~~lp~~l~~l~~L~~L~ls~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 184 (790)
+|.+++..|.++.++++|++|++++|.+...+. ..+..+++|++|++++|.+
T Consensus 85 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~----------------------------~~~~~l~~L~~L~L~~n~l 136 (353)
T 2z80_A 85 SNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSS----------------------------SWFKPLSSLTFLNLLGNPY 136 (353)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECCSSCCSSCCH----------------------------HHHTTCTTCSEEECTTCCC
T ss_pred CCccCccCHhhcCCCCCCCEEECCCCcCCcCCH----------------------------hHhCCCccCCEEECCCCCC
Confidence 999998777889999999999998886442211 1356667777777777777
Q ss_pred cccCc-ccCcCCCCCCEEECCCCC-CCCCCcchhccCCCCCcEEEccCCcCCCCCCccCCCCCCCcEEeCCCCcCCcccc
Q 047929 185 HHFAP-LASANFSSLNALDLSGNL-FGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTIS 262 (790)
Q Consensus 185 ~~~~~-~~l~~l~~L~~L~L~~~~-l~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~ 262 (790)
..++. ..+..+++|++|++++|. +.. ..+..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.....
T Consensus 137 ~~l~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 215 (353)
T 2z80_A 137 KTLGETSLFSHLTKLQILRVGNMDTFTK-IQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLE 215 (353)
T ss_dssp SSSCSSCSCTTCTTCCEEEEEESSSCCE-ECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHH
T ss_pred cccCchhhhccCCCCcEEECCCCccccc-cCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchh
Confidence 66655 566677777777777763 322 224455666667777777776666666666666667777766666654433
Q ss_pred ccccCCCCCCEEEccCcccccccCcccccCCCCCCEEEccCCCCCCCcchhhhhhhccccCCCCEEEccCCcccc----c
Q 047929 263 DCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISG----Q 338 (790)
Q Consensus 263 ~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~----~ 338 (790)
..+..+++|+.|++++|.+.+..+.. +. .......++.++++++.+.+ .
T Consensus 216 ~~~~~~~~L~~L~L~~n~l~~~~~~~-l~--------------------------~~~~~~~l~~l~L~~~~l~~~~l~~ 268 (353)
T 2z80_A 216 IFVDVTSSVECLELRDTDLDTFHFSE-LS--------------------------TGETNSLIKKFTFRNVKITDESLFQ 268 (353)
T ss_dssp HHHHHTTTEEEEEEESCBCTTCCCC---------------------------------CCCCCCEEEEESCBCCHHHHHH
T ss_pred hhhhhcccccEEECCCCccccccccc-cc--------------------------cccccchhhccccccccccCcchhh
Confidence 34444566666666666655322111 10 11123345566666665543 3
Q ss_pred cchhhccCCCCcEEEccCcccCCCCCcCcCCCCCCCEEECcCCcCCCcC
Q 047929 339 LTNQLGLFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMI 387 (790)
Q Consensus 339 ~~~~l~~l~~L~~L~L~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 387 (790)
+|..+..+++|++|++++|+++...+..++.+++|++|++++|++.+..
T Consensus 269 l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~ 317 (353)
T 2z80_A 269 VMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 317 (353)
T ss_dssp HHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred hHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcC
Confidence 5667888999999999999998444444689999999999999987644
No 51
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.94 E-value=3.7e-29 Score=284.36 Aligned_cols=239 Identities=14% Similarity=0.111 Sum_probs=118.8
Q ss_pred CcccCceeecCCCCcEEEEEcCCCCCCccccccCcCCCCCCEEeCCCCCCCC--CCcCccc------------cCCCCCC
Q 047929 34 CCEWGGVVCNNITGHVLELNLERSELGGKINPALVDLKHLNLLDLSGNDFQG--IQIPEYI------------GSMDNLR 99 (790)
Q Consensus 34 ~~~~~~~~c~~~~~~v~~L~L~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~--~~l~~~~------------~~l~~L~ 99 (790)
|++|.++.+.. -+.+.+.++ .....+..+.++++|++|+++++.... ..+|..+ ..+++|+
T Consensus 41 ck~W~~~~~~~----~~~l~~~~~-~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~ 115 (592)
T 3ogk_B 41 CRRWFKIDSET----REHVTMALC-YTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLK 115 (592)
T ss_dssp CHHHHHHHHHH----CCEEEESCG-GGSCHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCC
T ss_pred hHHHHHhhhcc----ccEEEEeec-cccChHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCC
Confidence 44788876531 123334333 222334556788899999998754210 0122222 2678888
Q ss_pred EEeCCCCcccccCCCCCCC-CC-CCcEEECcCCcccccccCcc-ccCCCCCCcEEECCCCCCCCC-ch-hHHhhCCCCCC
Q 047929 100 YLNLSGAGFAGWIPHQLGN-LS-NLMHLDLSGSYYELRVEDIS-WLAGPSLLEHLDTSDVDLIKA-SD-WLLVINSLPSL 174 (790)
Q Consensus 100 ~L~Ls~~~~~~~lp~~l~~-l~-~L~~L~ls~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~-~~-~~~~l~~l~~L 174 (790)
+|++++|.+++..+..+.. ++ +|++|++++|.. .....+. ...++++|++|+++++.+.+. .. +......+++|
T Consensus 116 ~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~-~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L 194 (592)
T 3ogk_B 116 SVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSG-FTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSL 194 (592)
T ss_dssp EEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEE-EEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCC
T ss_pred eEEeeccEecHHHHHHHHHhccccCcEEECcCCCC-cCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCc
Confidence 8888888776655555544 33 388888887751 1111111 123456666666666654433 11 22334455566
Q ss_pred CEEEccCccccccC----cccCcCCCCCCEEECCCCCCCCCCcchhccCCCCCcEEEccCCcCC---CCCCccCCCCCCC
Q 047929 175 KVLKLFSCKLHHFA----PLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFR---GPIPDGFKNLTSL 247 (790)
Q Consensus 175 ~~L~l~~~~~~~~~----~~~l~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L~l~~~~~~---~~~p~~~~~l~~L 247 (790)
++|++++|.+..+. +..+..+++|++|++++|.+. .+|..+..+++|++|+++..... ...+..+..+++|
T Consensus 195 ~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~--~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L 272 (592)
T 3ogk_B 195 EVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEIL--ELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKL 272 (592)
T ss_dssp CEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGG--GGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTC
T ss_pred cEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHH--HHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccc
Confidence 66666555554222 122334555555555555542 24455555555555555532211 1222334444555
Q ss_pred cEEeCCCCcCCccccccccCCCCCCEEEccCccc
Q 047929 248 RYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRL 281 (790)
Q Consensus 248 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l 281 (790)
+.|++.++.. ...+..+..+++|++|++++|.+
T Consensus 273 ~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l 305 (592)
T 3ogk_B 273 CRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALL 305 (592)
T ss_dssp CEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCC
T ss_pred cccCccccch-hHHHHHHhhcCCCcEEecCCCcC
Confidence 5555544321 22333344444455555554443
No 52
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.93 E-value=1.3e-25 Score=231.95 Aligned_cols=253 Identities=25% Similarity=0.303 Sum_probs=154.8
Q ss_pred cccCceeecCCCCcEEEEEcCCCCCCccccccCcCCCCCCEEeCCCCCCCCCCcCccccCCCCCCEEeCCCCccccc--C
Q 047929 35 CEWGGVVCNNITGHVLELNLERSELGGKINPALVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGW--I 112 (790)
Q Consensus 35 ~~~~~~~c~~~~~~v~~L~L~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~--l 112 (790)
|.|.++.|.+ .+++ .+|..+. ++|++|++++|.+... -+..+.++++|++|++++|.+... .
T Consensus 7 C~~~~l~c~~------------~~l~-~ip~~~~--~~l~~L~L~~n~l~~i-~~~~~~~l~~L~~L~L~~n~l~~~~~~ 70 (306)
T 2z66_A 7 CSGTEIRCNS------------KGLT-SVPTGIP--SSATRLELESNKLQSL-PHGVFDKLTQLTKLSLSSNGLSFKGCC 70 (306)
T ss_dssp EETTEEECCS------------SCCS-SCCSCCC--TTCCEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCCCEEEEE
T ss_pred eCCCEEEcCC------------CCcc-cCCCCCC--CCCCEEECCCCccCcc-CHhHhhccccCCEEECCCCccCcccCc
Confidence 6787777753 2333 3333222 4666666666666632 223356666666666666665532 2
Q ss_pred CCCCCCCCCCcEEECcCCcccccccCccccCCCCCCcEEECCCCCCCCCchhHHhhCCCCCCCEEEccCccccccCcccC
Q 047929 113 PHQLGNLSNLMHLDLSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLAS 192 (790)
Q Consensus 113 p~~l~~l~~L~~L~ls~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l 192 (790)
|..+..+++|++|++++|.+...+ ..+..+++|++|+++++.+..... ...+..+++|++|++++|.+....+..+
T Consensus 71 ~~~~~~~~~L~~L~Ls~n~i~~l~---~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 146 (306)
T 2z66_A 71 SQSDFGTTSLKYLDLSFNGVITMS---SNFLGLEQLEHLDFQHSNLKQMSE-FSVFLSLRNLIYLDISHTHTRVAFNGIF 146 (306)
T ss_dssp EHHHHSCSCCCEEECCSCSEEEEE---EEEETCTTCCEEECTTSEEESSTT-TTTTTTCTTCCEEECTTSCCEECSTTTT
T ss_pred ccccccccccCEEECCCCccccCh---hhcCCCCCCCEEECCCCccccccc-chhhhhccCCCEEECCCCcCCccchhhc
Confidence 444555666666666666544221 223445555555555554443321 0145666777777777777777766777
Q ss_pred cCCCCCCEEECCCCCCCCCCcchhccCCCCCcEEEccCCcCCCCCCccCCCCCCCcEEeCCCCcCCccccccccCCCCCC
Q 047929 193 ANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLE 272 (790)
Q Consensus 193 ~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 272 (790)
..+++|++|++++|.+.+..+|..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+..+..+..+++|+
T Consensus 147 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 226 (306)
T 2z66_A 147 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQ 226 (306)
T ss_dssp TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCC
T ss_pred ccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCC
Confidence 77777777777777664333566667777777777777777766666777777777777777777766666677777777
Q ss_pred EEEccCcccccccCcccccCC-CCCCEEEccCCCCCC
Q 047929 273 YLSLGYNRLQGTISSIGLENL-TFIKTLDLSFNELGQ 308 (790)
Q Consensus 273 ~L~l~~~~l~~~~~~~~l~~l-~~L~~L~l~~~~~~~ 308 (790)
.|++++|.+.+..+.. +..+ ++|+.|++++|.+..
T Consensus 227 ~L~L~~N~l~~~~~~~-~~~~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 227 VLDYSLNHIMTSKKQE-LQHFPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp EEECTTSCCCBCSSSS-CCCCCTTCCEEECTTCCEEC
T ss_pred EeECCCCCCcccCHHH-HHhhhccCCEEEccCCCeec
Confidence 7777777776554443 5555 367777777766654
No 53
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.93 E-value=9.3e-28 Score=272.82 Aligned_cols=135 Identities=17% Similarity=0.037 Sum_probs=57.1
Q ss_pred CCCCCcEEeCCCCcCCccccccccC-CC-CCCEEEccCccc-ccccCcccccCCCCCCEEEccCCCCCCCcchhhhhhhc
Q 047929 243 NLTSLRYLDLSYNQFNSTISDCFSN-FD-DLEYLSLGYNRL-QGTISSIGLENLTFIKTLDLSFNELGQDISEILDIISA 319 (790)
Q Consensus 243 ~l~~L~~L~l~~~~~~~~~~~~l~~-l~-~L~~L~l~~~~l-~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 319 (790)
.+++|++|++++|.+.+..+..+.. ++ +|++|++++|.. ...........+++|++|++++|.+......+... ..
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~-~~ 188 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHE-LA 188 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHH-HH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHH-HH
Confidence 4455666666555554443333333 22 255555555541 10000001224455555555555443322211110 12
Q ss_pred cccCCCCEEEccCCccc----cccchhhccCCCCcEEEccCcccCCCCCcCcCCCCCCCEEECc
Q 047929 320 CAAFELESLFLRGCKIS----GQLTNQLGLFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLS 379 (790)
Q Consensus 320 ~~~~~L~~L~l~~~~~~----~~~~~~l~~l~~L~~L~L~~~~i~~~~~~~~~~l~~L~~L~l~ 379 (790)
..+++|++|++++|.+. ..++..+..+++|++|++++|.+.+ ++..+..+++|+.|+++
T Consensus 189 ~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~ 251 (592)
T 3ogk_B 189 QHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGG 251 (592)
T ss_dssp HHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEEC
T ss_pred hcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhccc
Confidence 23445555555555443 1222233344555555555554442 33344444555555444
No 54
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.93 E-value=5.1e-25 Score=228.63 Aligned_cols=225 Identities=19% Similarity=0.288 Sum_probs=130.3
Q ss_pred CCCCCEEEccCCccCCCcccccccccccccCCCccCCCCCCcEEEccCCcccccCCcCCCCCCCCCEEEccCCcccccCC
Q 047929 443 QKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIP 522 (790)
Q Consensus 443 ~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~ 522 (790)
.+.++.|++++|.+.. +|..+..+++|++|++++|.++ .+|..+..+++|++|++++|.++ ..|
T Consensus 80 ~~~l~~L~L~~n~l~~--------------lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp 143 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQ--------------FPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALP 143 (328)
T ss_dssp STTCCEEEEESSCCSS--------------CCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCC
T ss_pred ccceeEEEccCCCchh--------------cChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCc
Confidence 3667777777776643 2333455667777777777766 56666666777777777777766 445
Q ss_pred ccccCCCCCcEEECcCCcccccCchhhh--------hcCCCCcEEEcCCCcccccCCccccCCCCCcEEEccCCcccccC
Q 047929 523 VPFENCSQLVALDMGENEFVGNIPTWMG--------ERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSV 594 (790)
Q Consensus 523 ~~l~~l~~L~~L~l~~n~~~~~~~~~~~--------~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~ 594 (790)
..+..+++|++|++++|.+.+.+|..+. ..+++|++|++++|+++ .+|..+..+++|++|++++|.+.+ +
T Consensus 144 ~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l 221 (328)
T 4fcg_A 144 ASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-L 221 (328)
T ss_dssp GGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-C
T ss_pred HHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-C
Confidence 5666677777777777666666665442 12555555555555555 444555555555555555555552 3
Q ss_pred CcchhccccccccCCccccceeecccccccceeeeeeeeeccchhhhhhcccceeEEEccCccCCCCCCcccccCCCCCE
Q 047929 595 PKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGEIPMEVTNLKGLQS 674 (790)
Q Consensus 595 p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 674 (790)
|..+..+++ |++|++++|.+.+.+|..++.+++|++
T Consensus 222 ~~~l~~l~~--------------------------------------------L~~L~Ls~n~~~~~~p~~~~~l~~L~~ 257 (328)
T 4fcg_A 222 GPAIHHLPK--------------------------------------------LEELDLRGCTALRNYPPIFGGRAPLKR 257 (328)
T ss_dssp CGGGGGCTT--------------------------------------------CCEEECTTCTTCCBCCCCTTCCCCCCE
T ss_pred chhhccCCC--------------------------------------------CCEEECcCCcchhhhHHHhcCCCCCCE
Confidence 333332222 345555555555555555555555555
Q ss_pred EeCCCCcCCcCCCccccCCCCCCEEeCcCccCccccCccccCCCCCCEEECcCCc
Q 047929 675 LNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLSFLNHLNLSDNK 729 (790)
Q Consensus 675 L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~ 729 (790)
|++++|.+.+.+|..+..+++|++|++++|++.+.+|+.+..+++|+.+++..+.
T Consensus 258 L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~ 312 (328)
T 4fcg_A 258 LILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHL 312 (328)
T ss_dssp EECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGG
T ss_pred EECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHH
Confidence 5555555555555555555555555555555555555555555555555555443
No 55
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.93 E-value=5.5e-25 Score=224.55 Aligned_cols=251 Identities=19% Similarity=0.178 Sum_probs=191.8
Q ss_pred CEEEccCCccCCCcccccccccccccCCCccCCCCCCcEEEccCCcccccCCcCCCCCCCCCEEEccCCcccccCCcccc
Q 047929 447 SKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFE 526 (790)
Q Consensus 447 ~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~ 526 (790)
++++.+++.+..++ .. ..++|+.|++++|.+++..+..|..+++|++|++++|.++++.+..|.
T Consensus 14 ~~~~c~~~~l~~ip--------------~~--~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 77 (285)
T 1ozn_A 14 VTTSCPQQGLQAVP--------------VG--IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFT 77 (285)
T ss_dssp CEEECCSSCCSSCC--------------TT--CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTT
T ss_pred eEEEcCcCCcccCC--------------cC--CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcC
Confidence 56666666665432 11 236788888888888877777788888888888888888888788888
Q ss_pred CCCCCcEEECcCCc-ccccCchhhhhcCCCCcEEEcCCCcccccCCccccCCCCCcEEEccCCcccccCCcchhcccccc
Q 047929 527 NCSQLVALDMGENE-FVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCINNFTAMA 605 (790)
Q Consensus 527 ~l~~L~~L~l~~n~-~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~ 605 (790)
.+++|++|++++|. +. .++...+..+++|++|++++|++++..+..+..+++|++|++++|.+.+..+..+..+++
T Consensus 78 ~l~~L~~L~l~~n~~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-- 154 (285)
T 1ozn_A 78 GLALLEQLDLSDNAQLR-SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGN-- 154 (285)
T ss_dssp TCTTCCEEECCSCTTCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT--
T ss_pred CccCCCEEeCCCCCCcc-ccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCC--
Confidence 88888899998887 55 443333347888999999999888777778888899999999999887555544544443
Q ss_pred ccCCccccceeecccccccceeeeeeeeeccchhhhhhcccceeEEEccCccCCCCCCcccccCCCCCEEeCCCCcCCcC
Q 047929 606 TIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGK 685 (790)
Q Consensus 606 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 685 (790)
|++|++++|++.+..+..+..+++|++|++++|.+++.
T Consensus 155 ------------------------------------------L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 192 (285)
T 1ozn_A 155 ------------------------------------------LTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHV 192 (285)
T ss_dssp ------------------------------------------CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE
T ss_pred ------------------------------------------ccEEECCCCcccccCHHHhcCccccCEEECCCCccccc
Confidence 46888999988866666788899999999999999888
Q ss_pred CCccccCCCCCCEEeCcCccCccccCccccCCCCCCEEECcCCcccccCCCCCcCCccCCccccCC-cccCCCC
Q 047929 686 IPETIGNMRSIESLDLSGNQISGKIPQSMSSLSFLNHLNLSDNKLVGKIPSSTQLQSFGASSITGN-DLCGAPL 758 (790)
Q Consensus 686 ~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~sl~~l~~~~n-~l~~~~~ 758 (790)
.|.+|..+++|+.|++++|.+.+..+..+..+++|++|++++|++....+.......++.+....+ .-|..|.
T Consensus 193 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~~~~l~~~~~~~~~~~c~~p~ 266 (285)
T 1ozn_A 193 HPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQ 266 (285)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHHHHHHHCCSEECCCBEEESG
T ss_pred CHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcHHHHHHHHhcccccCccccCCch
Confidence 888899999999999999999977667788999999999999998876554433344555555555 4455554
No 56
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.92 E-value=1.7e-24 Score=223.42 Aligned_cols=249 Identities=21% Similarity=0.237 Sum_probs=159.4
Q ss_pred CEEeCCCCCCCCCCcCccccCCCCCCEEeCCCCcccccCCCCCCCCCCCcEEECcCCcccccccCccccCCCCCCcEEEC
Q 047929 74 NLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHLDLSGSYYELRVEDISWLAGPSLLEHLDT 153 (790)
Q Consensus 74 ~~L~Ls~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~ls~~~~~~~~~~~~~l~~l~~L~~L~l 153 (790)
+.++++++.++ .+|..+. ++|++|++++|.+....+..+.++++|++|++++|.+.........+..+++|++|++
T Consensus 10 ~~l~c~~~~l~--~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L 85 (306)
T 2z66_A 10 TEIRCNSKGLT--SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL 85 (306)
T ss_dssp TEEECCSSCCS--SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEEC
T ss_pred CEEEcCCCCcc--cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEEC
Confidence 56888888888 5677554 7999999999999974444579999999999999986644333334445677777777
Q ss_pred CCCCCCCCchhHHhhCCCCCCCEEEccCccccccCc-ccCcCCCCCCEEECCCCCCCCCCcchhccCCCCCcEEEccCCc
Q 047929 154 SDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAP-LASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNI 232 (790)
Q Consensus 154 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L~l~~~~ 232 (790)
+++.+...+. .+..+++|++|++++|.+..... ..+..+++|++|++++|.+.. ..+..+..+++|++|++++|.
T Consensus 86 s~n~i~~l~~---~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~ 161 (306)
T 2z66_A 86 SFNGVITMSS---NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV-AFNGIFNGLSSLEVLKMAGNS 161 (306)
T ss_dssp CSCSEEEEEE---EEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEE-CSTTTTTTCTTCCEEECTTCE
T ss_pred CCCccccChh---hcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCc-cchhhcccCcCCCEEECCCCc
Confidence 7766654432 45566667777776666666554 456666666666666666543 344555566666666666666
Q ss_pred CCC-CCCccCCCCCCCcEEeCCCCcCCccccccccCCCCCCEEEccCcccccccCcccccCCCCCCEEEccCCCCCCCcc
Q 047929 233 FRG-PIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQDIS 311 (790)
Q Consensus 233 ~~~-~~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 311 (790)
+.+ ..|..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+. +...+..+++|+.|++++|.+....+
T Consensus 162 l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~ 240 (306)
T 2z66_A 162 FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL-DTFPYKCLNSLQVLDYSLNHIMTSKK 240 (306)
T ss_dssp EGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBC-CSGGGTTCTTCCEEECTTSCCCBCSS
T ss_pred cccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCcc-ChhhccCcccCCEeECCCCCCcccCH
Confidence 654 3555666666666666666666665566666666666666666666532 22225556666666666666555444
Q ss_pred hhhhhhhcccc-CCCCEEEccCCccc
Q 047929 312 EILDIISACAA-FELESLFLRGCKIS 336 (790)
Q Consensus 312 ~~~~~~~~~~~-~~L~~L~l~~~~~~ 336 (790)
. .+..+ ++|+.|++++|.+.
T Consensus 241 ~-----~~~~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 241 Q-----ELQHFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp S-----SCCCCCTTCCEEECTTCCEE
T ss_pred H-----HHHhhhccCCEEEccCCCee
Confidence 3 23333 25555555555554
No 57
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.92 E-value=5.9e-25 Score=231.74 Aligned_cols=239 Identities=16% Similarity=0.206 Sum_probs=145.5
Q ss_pred cccCCCCCEEEccCCccCCCcccccccccccccCCCccCCCCCCcEEEccCCcccccCCcCCCCCCCCCEEEccCCcccc
Q 047929 440 LHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSG 519 (790)
Q Consensus 440 ~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~ 519 (790)
+..+++|++|++++|.+.++. +..+..+++|++|++++|.+++..+..+..+++|++|++++|+++.
T Consensus 72 ~~~l~~L~~L~L~~n~l~~~~-------------~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 138 (353)
T 2z80_A 72 LQRCVNLQALVLTSNGINTIE-------------EDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKT 138 (353)
T ss_dssp TTTCTTCCEEECTTSCCCEEC-------------TTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSS
T ss_pred hccCCCCCEEECCCCccCccC-------------HhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcc
Confidence 444555555555555544322 2234455566666666666654333335556666666666666664
Q ss_pred cCC-ccccCCCCCcEEECcCCcccccCchhhhhcCCCCcEEEcCCCcccccCCccccCCCCCcEEEccCCcccccCCcch
Q 047929 520 IIP-VPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCI 598 (790)
Q Consensus 520 ~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l 598 (790)
+.. ..+..+++|++|++++|.....++...+..+++|++|++++|++++..|..+..+++|++|++++|.+. .+|..+
T Consensus 139 l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~ 217 (353)
T 2z80_A 139 LGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIF 217 (353)
T ss_dssp SCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST-THHHHH
T ss_pred cCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc-cchhhh
Confidence 443 355666666666666663222333222235666666666666666666666666677777777776654 222111
Q ss_pred hccccccccCCccccceeecccccccceeeeeeeeeccchhhhhhcccceeEEEccCccCCCCCCccc---ccCCCCCEE
Q 047929 599 NNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGEIPMEV---TNLKGLQSL 675 (790)
Q Consensus 599 ~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~---~~l~~L~~L 675 (790)
...++.|+.|++++|.+.+..+..+ .....++.+
T Consensus 218 -------------------------------------------~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l 254 (353)
T 2z80_A 218 -------------------------------------------VDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKF 254 (353)
T ss_dssp -------------------------------------------HHHTTTEEEEEEESCBCTTCCCC------CCCCCCEE
T ss_pred -------------------------------------------hhhcccccEEECCCCccccccccccccccccchhhcc
Confidence 1123445677777777765444333 235667777
Q ss_pred eCCCCcCCc----CCCccccCCCCCCEEeCcCccCccccCcc-ccCCCCCCEEECcCCcccccCCC
Q 047929 676 NLSHNSFIG----KIPETIGNMRSIESLDLSGNQISGKIPQS-MSSLSFLNHLNLSDNKLVGKIPS 736 (790)
Q Consensus 676 ~L~~n~l~~----~~p~~l~~l~~L~~L~l~~n~l~~~~p~~-l~~l~~L~~L~l~~n~l~~~~p~ 736 (790)
+++++.+.+ .+|+++..+++|++|++++|++.. +|.. |..+++|++|++++|++.+..|.
T Consensus 255 ~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~-i~~~~~~~l~~L~~L~L~~N~~~~~~~~ 319 (353)
T 2z80_A 255 TFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCPR 319 (353)
T ss_dssp EEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred ccccccccCcchhhhHHHHhcccCCCEEECCCCCCCc-cCHHHHhcCCCCCEEEeeCCCccCcCCC
Confidence 777777664 356778889999999999999984 5544 58899999999999999887763
No 58
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.92 E-value=1.3e-23 Score=229.24 Aligned_cols=247 Identities=23% Similarity=0.256 Sum_probs=193.5
Q ss_pred eEEEcCCCCCCCCCCcccccCCCCCEEEccCCccCCCcccccccccccccCCCccCCCCCCcEEEccCCcccccCCcCCC
Q 047929 423 LALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMG 502 (790)
Q Consensus 423 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 502 (790)
..++..+..+. .+|..+. +++++|++++|.+..+. +..+..+++|+.|++++|.+++..+..|.
T Consensus 57 ~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~-------------~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~ 120 (452)
T 3zyi_A 57 SKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQ-------------ADTFRHLHHLEVLQLGRNSIRQIEVGAFN 120 (452)
T ss_dssp CEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEEC-------------TTTTTTCTTCCEEECCSSCCCEECTTTTT
T ss_pred cEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceEC-------------HHHcCCCCCCCEEECCCCccCCcChhhcc
Confidence 34444444443 2333332 57888888888876543 34557788888999998888877778888
Q ss_pred CCCCCCEEEccCCcccccCCccccCCCCCcEEECcCCcccccCchhhhhcCCCCcEEEcCCC-cccccCCccccCCCCCc
Q 047929 503 TLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSN-KLHGIFPIQICHLSSLQ 581 (790)
Q Consensus 503 ~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n-~~~~~~~~~~~~l~~L~ 581 (790)
.+++|++|++++|+++.+.+..|..+++|++|++++|.+. .++...+..+++|++|++++| .+....+..+..+++|+
T Consensus 121 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~ 199 (452)
T 3zyi_A 121 GLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLK 199 (452)
T ss_dssp TCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCC
T ss_pred CcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcc-eeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCC
Confidence 8889999999999888877778888889999999998887 455555557888999999884 45545555688889999
Q ss_pred EEEccCCcccccCCcchhccccccccCCccccceeecccccccceeeeeeeeeccchhhhhhcccceeEEEccCccCCCC
Q 047929 582 ILDVAYNRLSGSVPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGE 661 (790)
Q Consensus 582 ~L~ls~n~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~ 661 (790)
.|++++|.+.+ +|. +.. ++.|++|+|++|.+.+.
T Consensus 200 ~L~L~~n~l~~-~~~-~~~--------------------------------------------l~~L~~L~Ls~N~l~~~ 233 (452)
T 3zyi_A 200 YLNLGMCNIKD-MPN-LTP--------------------------------------------LVGLEELEMSGNHFPEI 233 (452)
T ss_dssp EEECTTSCCSS-CCC-CTT--------------------------------------------CTTCCEEECTTSCCSEE
T ss_pred EEECCCCcccc-ccc-ccc--------------------------------------------cccccEEECcCCcCccc
Confidence 99999998873 231 222 34567899999999988
Q ss_pred CCcccccCCCCCEEeCCCCcCCcCCCccccCCCCCCEEeCcCccCccccCccccCCCCCCEEECcCCcccc
Q 047929 662 IPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLSFLNHLNLSDNKLVG 732 (790)
Q Consensus 662 ~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~ 732 (790)
.|..|..+++|++|++++|.+++..+.+|.++++|+.|++++|+++...+..+..+++|+.|++++|++..
T Consensus 234 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C 304 (452)
T 3zyi_A 234 RPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNC 304 (452)
T ss_dssp CGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEEC
T ss_pred CcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCC
Confidence 88889999999999999999998888899999999999999999998777888899999999999998753
No 59
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.92 E-value=1.4e-23 Score=228.26 Aligned_cols=246 Identities=23% Similarity=0.266 Sum_probs=190.6
Q ss_pred EEEcCCCCCCCCCCcccccCCCCCEEEccCCccCCCcccccccccccccCCCccCCCCCCcEEEccCCcccccCCcCCCC
Q 047929 424 ALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGT 503 (790)
Q Consensus 424 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 503 (790)
.++..+..+. .+|..+. ++++.|++++|.+..+.+ ..+..+++|++|++++|.+.+..+..|..
T Consensus 47 ~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~-------------~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~ 110 (440)
T 3zyj_A 47 KVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKV-------------NSFKHLRHLEILQLSRNHIRTIEIGAFNG 110 (440)
T ss_dssp EEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECT-------------TTTSSCSSCCEEECCSSCCCEECGGGGTT
T ss_pred EEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCH-------------HHhhCCCCCCEEECCCCcCCccChhhccC
Confidence 4444444443 3333332 578888888888765433 44567788888888888888777777888
Q ss_pred CCCCCEEEccCCcccccCCccccCCCCCcEEECcCCcccccCchhhhhcCCCCcEEEcCCC-cccccCCccccCCCCCcE
Q 047929 504 LTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSN-KLHGIFPIQICHLSSLQI 582 (790)
Q Consensus 504 l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n-~~~~~~~~~~~~l~~L~~ 582 (790)
+++|++|++++|+++.+.+..|..+++|++|++++|.+. .++...+..+++|++|++++| .+....+..|..+++|+.
T Consensus 111 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~ 189 (440)
T 3zyj_A 111 LANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRY 189 (440)
T ss_dssp CSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCE
T ss_pred CccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCccc-ccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCe
Confidence 888888888888888777777888888888888888887 445444457888888888884 444445556888888999
Q ss_pred EEccCCcccccCCcchhccccccccCCccccceeecccccccceeeeeeeeeccchhhhhhcccceeEEEccCccCCCCC
Q 047929 583 LDVAYNRLSGSVPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGEI 662 (790)
Q Consensus 583 L~ls~n~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~ 662 (790)
|++++|.++ .+|. +.. ++.|++|+|++|.+.+..
T Consensus 190 L~L~~n~l~-~~~~-~~~--------------------------------------------l~~L~~L~Ls~N~l~~~~ 223 (440)
T 3zyj_A 190 LNLAMCNLR-EIPN-LTP--------------------------------------------LIKLDELDLSGNHLSAIR 223 (440)
T ss_dssp EECTTSCCS-SCCC-CTT--------------------------------------------CSSCCEEECTTSCCCEEC
T ss_pred ecCCCCcCc-cccc-cCC--------------------------------------------CcccCEEECCCCccCccC
Confidence 999988876 3332 222 345678999999998878
Q ss_pred CcccccCCCCCEEeCCCCcCCcCCCccccCCCCCCEEeCcCccCccccCccccCCCCCCEEECcCCcccc
Q 047929 663 PMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLSFLNHLNLSDNKLVG 732 (790)
Q Consensus 663 ~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~ 732 (790)
|..|..+++|++|++++|.+++..+.+|.++++|++|++++|+++...+..+..+++|+.|++++|++..
T Consensus 224 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C 293 (440)
T 3zyj_A 224 PGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNC 293 (440)
T ss_dssp TTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEEC
T ss_pred hhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccC
Confidence 8889999999999999999998888899999999999999999998778888999999999999998753
No 60
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.91 E-value=7.8e-24 Score=215.96 Aligned_cols=225 Identities=22% Similarity=0.193 Sum_probs=152.1
Q ss_pred EEEEcCCCCCCccccccCcCCCCCCEEeCCCCCCCCCCcCccccCCCCCCEEeCCCCcccccCCCCCCCCCCCcEEECcC
Q 047929 50 LELNLERSELGGKINPALVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHLDLSG 129 (790)
Q Consensus 50 ~~L~L~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~ls~ 129 (790)
++++.++.+++ .+|..+ .++|++|++++|.+.+. .++.+..+++|++|++++|.+++..|.++..+++|++|++++
T Consensus 14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~-~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHV-PAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCcc-CHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence 56777777776 445433 46899999999998854 456788899999999999998887788889999999999988
Q ss_pred Cc-ccccccCccccCCCCCCcEEECCCCCCCCCchhHHhhCCCCCCCEEEccCccccccCcccCcCCCCCCEEECCCCCC
Q 047929 130 SY-YELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLF 208 (790)
Q Consensus 130 ~~-~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~l 208 (790)
|. +..... . .+..+++|++|++++|.+....+..+..+++|++|++++|.+
T Consensus 90 n~~l~~~~~--~--------------------------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 141 (285)
T 1ozn_A 90 NAQLRSVDP--A--------------------------TFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNAL 141 (285)
T ss_dssp CTTCCCCCT--T--------------------------TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CCCccccCH--H--------------------------HhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcc
Confidence 85 332211 1 345566666666666666666666666666777777777666
Q ss_pred CCCCcchhccCCCCCcEEEccCCcCCCCCCccCCCCCCCcEEeCCCCcCCccccccccCCCCCCEEEccCcccccccCcc
Q 047929 209 GKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSI 288 (790)
Q Consensus 209 ~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~ 288 (790)
.. ..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+ ++..
T Consensus 142 ~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~ 219 (285)
T 1ozn_A 142 QA-LPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA-LPTE 219 (285)
T ss_dssp CC-CCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSC-CCHH
T ss_pred cc-cCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCc-CCHH
Confidence 43 223335566667777777776665555556666777777777777666666666666777777777776663 3333
Q ss_pred cccCCCCCCEEEccCCCCCC
Q 047929 289 GLENLTFIKTLDLSFNELGQ 308 (790)
Q Consensus 289 ~l~~l~~L~~L~l~~~~~~~ 308 (790)
.+..+++|+.|++++|.+..
T Consensus 220 ~~~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 220 ALAPLRALQYLRLNDNPWVC 239 (285)
T ss_dssp HHTTCTTCCEEECCSSCEEC
T ss_pred HcccCcccCEEeccCCCccC
Confidence 36666666666666666543
No 61
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.91 E-value=3.1e-23 Score=225.48 Aligned_cols=248 Identities=24% Similarity=0.292 Sum_probs=210.9
Q ss_pred CCCEEEccCCccCCCcccccccccccccCCCccCCCCCCcEEEccCCcccccCCcCCCCCCCCCEEEccCCcccccCCcc
Q 047929 445 HLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVP 524 (790)
Q Consensus 445 ~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~ 524 (790)
..+.++.++..+..++ ..+ .++++.|++++|.+.+..+..|..+++|++|++++|.+..+.+..
T Consensus 44 ~~~~v~c~~~~l~~iP--------------~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~ 107 (440)
T 3zyj_A 44 QFSKVICVRKNLREVP--------------DGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGA 107 (440)
T ss_dssp TSCEEECCSCCCSSCC--------------SCC--CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGG
T ss_pred CCCEEEeCCCCcCcCC--------------CCC--CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhh
Confidence 4567888887776543 222 268999999999999888889999999999999999999988899
Q ss_pred ccCCCCCcEEECcCCcccccCchhhhhcCCCCcEEEcCCCcccccCCccccCCCCCcEEEccCCcccccCCc-chhcccc
Q 047929 525 FENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPK-CINNFTA 603 (790)
Q Consensus 525 l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~-~l~~l~~ 603 (790)
|.++++|++|++++|.+. .++...+..+++|++|++++|++....+..|..+++|+.|++++|...+.++. .+.++
T Consensus 108 ~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l-- 184 (440)
T 3zyj_A 108 FNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGL-- 184 (440)
T ss_dssp GTTCSSCCEEECCSSCCS-SCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTC--
T ss_pred ccCCccCCEEECCCCcCC-eeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcc--
Confidence 999999999999999998 55555456899999999999999988888899999999999999665444443 34433
Q ss_pred ccccCCccccceeecccccccceeeeeeeeeccchhhhhhcccceeEEEccCccCCCCCCcccccCCCCCEEeCCCCcCC
Q 047929 604 MATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFI 683 (790)
Q Consensus 604 L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 683 (790)
+.|++|++++|++. .+| .+..+++|++|+|++|.++
T Consensus 185 ------------------------------------------~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~ 220 (440)
T 3zyj_A 185 ------------------------------------------SNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLS 220 (440)
T ss_dssp ------------------------------------------SSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCC
T ss_pred ------------------------------------------cccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccC
Confidence 34679999999998 555 4789999999999999999
Q ss_pred cCCCccccCCCCCCEEeCcCccCccccCccccCCCCCCEEECcCCcccccCCCC-CcCCccCCccccCCcc-cC
Q 047929 684 GKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLSFLNHLNLSDNKLVGKIPSS-TQLQSFGASSITGNDL-CG 755 (790)
Q Consensus 684 ~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~-~~~~sl~~l~~~~n~l-~~ 755 (790)
+..|..|.++++|+.|++++|++....+..|..+++|++|++++|++.+..+.. ..+.+|+.+++.+|++ |.
T Consensus 221 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~Cd 294 (440)
T 3zyj_A 221 AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCN 294 (440)
T ss_dssp EECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECS
T ss_pred ccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCC
Confidence 988999999999999999999999999999999999999999999999766654 4578899999999954 53
No 62
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.91 E-value=3.3e-23 Score=226.11 Aligned_cols=246 Identities=24% Similarity=0.283 Sum_probs=209.7
Q ss_pred CCCEEEccCCccCCCcccccccccccccCCCccCCCCCCcEEEccCCcccccCCcCCCCCCCCCEEEccCCcccccCCcc
Q 047929 445 HLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVP 524 (790)
Q Consensus 445 ~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~ 524 (790)
....++.++..+..+ |..+ .++++.|++++|.+++..+..|..+++|+.|++++|.++++.+..
T Consensus 55 ~~~~v~c~~~~l~~i--------------P~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~ 118 (452)
T 3zyi_A 55 QFSKVVCTRRGLSEV--------------PQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGA 118 (452)
T ss_dssp SSCEEECCSSCCSSC--------------CSCC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTT
T ss_pred CCcEEEECCCCcCcc--------------CCCC--CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhh
Confidence 456778777776654 2222 268999999999999888889999999999999999999999999
Q ss_pred ccCCCCCcEEECcCCcccccCchhhhhcCCCCcEEEcCCCcccccCCccccCCCCCcEEEccCCcccccCCc-chhcccc
Q 047929 525 FENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPK-CINNFTA 603 (790)
Q Consensus 525 l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~-~l~~l~~ 603 (790)
|.++++|++|++++|.+. .+|...+..+++|++|++++|+++...+..|..+++|+.|++++|...+.++. .+.++
T Consensus 119 ~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l-- 195 (452)
T 3zyi_A 119 FNGLASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGL-- 195 (452)
T ss_dssp TTTCTTCCEEECCSSCCS-BCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTC--
T ss_pred ccCcccCCEEECCCCcCC-ccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCC--
Confidence 999999999999999998 55555556899999999999999988888899999999999999665444443 34333
Q ss_pred ccccCCccccceeecccccccceeeeeeeeeccchhhhhhcccceeEEEccCccCCCCCCcccccCCCCCEEeCCCCcCC
Q 047929 604 MATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFI 683 (790)
Q Consensus 604 L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 683 (790)
+.|++|++++|++.+ +| .+..+++|++|++++|.++
T Consensus 196 ------------------------------------------~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~ 231 (452)
T 3zyi_A 196 ------------------------------------------FNLKYLNLGMCNIKD-MP-NLTPLVGLEELEMSGNHFP 231 (452)
T ss_dssp ------------------------------------------TTCCEEECTTSCCSS-CC-CCTTCTTCCEEECTTSCCS
T ss_pred ------------------------------------------CCCCEEECCCCcccc-cc-cccccccccEEECcCCcCc
Confidence 446799999999985 44 4788999999999999999
Q ss_pred cCCCccccCCCCCCEEeCcCccCccccCccccCCCCCCEEECcCCcccccCCCC-CcCCccCCccccCCcc
Q 047929 684 GKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLSFLNHLNLSDNKLVGKIPSS-TQLQSFGASSITGNDL 753 (790)
Q Consensus 684 ~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~-~~~~sl~~l~~~~n~l 753 (790)
+..|..|.++++|+.|++++|++.+..|..|..+++|+.|++++|++.+..+.. ..+.+|+.+++.+|++
T Consensus 232 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 232 EIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302 (452)
T ss_dssp EECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCE
T ss_pred ccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCc
Confidence 999999999999999999999999999999999999999999999998655554 3578899999999954
No 63
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.91 E-value=4.1e-25 Score=228.76 Aligned_cols=267 Identities=21% Similarity=0.236 Sum_probs=161.7
Q ss_pred CCEEEccCCccccccchhhccCCCCcEEEccCcccCCCCCcCcCCCCCCCEEECcCCcCCCcCChhhhccccccceeecC
Q 047929 325 LESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYAN 404 (790)
Q Consensus 325 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~ 404 (790)
++..+++.+.+.......+..+++|++|++++|.+.+..|..++.+++|++|++++|.+.+..+
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---------------- 75 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---------------- 75 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE----------------
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh----------------
Confidence 3444555555544444445556678888888888876666677777778888877776643221
Q ss_pred CCcceeecCCCCCCcccceEEEcCCCCCCCCCCcccccCCCCCEEEccCCccCCCcccccccccccccCCCccCCCCCCc
Q 047929 405 GNSVNFKINSKWVPPFQLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLR 484 (790)
Q Consensus 405 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 484 (790)
+..+++|++|++++|.+.++. ..++|+
T Consensus 76 -----------------------------------~~~l~~L~~L~Ls~n~l~~l~------------------~~~~L~ 102 (317)
T 3o53_A 76 -----------------------------------LESLSTLRTLDLNNNYVQELL------------------VGPSIE 102 (317)
T ss_dssp -----------------------------------ETTCTTCCEEECCSSEEEEEE------------------ECTTCC
T ss_pred -----------------------------------hhhcCCCCEEECcCCcccccc------------------CCCCcC
Confidence 233455555555555544321 125666
Q ss_pred EEEccCCcccccCCcCCCCCCCCCEEEccCCcccccCCccccCCCCCcEEECcCCcccccCchhhhhcCCCCcEEEcCCC
Q 047929 485 VLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSN 564 (790)
Q Consensus 485 ~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n 564 (790)
+|++++|.+++..+. .+++|++|++++|++++..+..+..+++|++|++++|.+.+..+..+...+++|++|++++|
T Consensus 103 ~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N 179 (317)
T 3o53_A 103 TLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179 (317)
T ss_dssp EEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS
T ss_pred EEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCC
Confidence 666666666644332 24566777777776666655566666666666666666654444444334555666666666
Q ss_pred cccccCCccccCCCCCcEEEccCCcccccCCcchhccccccccCCccccceeecccccccceeeeeeeeeccchhhhhhc
Q 047929 565 KLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSI 644 (790)
Q Consensus 565 ~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 644 (790)
++++..+ ...+++|++|++
T Consensus 180 ~l~~~~~--~~~l~~L~~L~L----------------------------------------------------------- 198 (317)
T 3o53_A 180 FIYDVKG--QVVFAKLKTLDL----------------------------------------------------------- 198 (317)
T ss_dssp CCCEEEC--CCCCTTCCEEEC-----------------------------------------------------------
T ss_pred cCccccc--ccccccCCEEEC-----------------------------------------------------------
Confidence 5554311 122444444444
Q ss_pred ccceeEEEccCccCCCCCCcccccCCCCCEEeCCCCcCCcCCCccccCCCCCCEEeCcCccCc-cccCccccCCCCCCEE
Q 047929 645 LNLVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQIS-GKIPQSMSSLSFLNHL 723 (790)
Q Consensus 645 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~-~~~p~~l~~l~~L~~L 723 (790)
++|.+. .+|..+..+++|++|++++|.++ .+|..+..+++|+.|++++|++. +.+|..+..+++|+.+
T Consensus 199 ---------s~N~l~-~l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l 267 (317)
T 3o53_A 199 ---------SSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTV 267 (317)
T ss_dssp ---------CSSCCC-EECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHH
T ss_pred ---------CCCcCC-cchhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEE
Confidence 444444 23344666777888888888777 45667777888888888888887 6677777788888888
Q ss_pred ECcCCc-ccccCC
Q 047929 724 NLSDNK-LVGKIP 735 (790)
Q Consensus 724 ~l~~n~-l~~~~p 735 (790)
++++|+ +.+..|
T Consensus 268 ~l~~~~~l~~~~~ 280 (317)
T 3o53_A 268 AKQTVKKLTGQNE 280 (317)
T ss_dssp HHHHHHHHHSSSS
T ss_pred ECCCchhccCCch
Confidence 887443 344333
No 64
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.91 E-value=3e-25 Score=229.85 Aligned_cols=257 Identities=19% Similarity=0.239 Sum_probs=197.5
Q ss_pred cccccCCCCCEEEccCCccCCCcccccccccccccCCCccCCCCCCcEEEccCCcccccCCcCCCCCCCCCEEEccCCcc
Q 047929 438 SWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRL 517 (790)
Q Consensus 438 ~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i 517 (790)
..+..+++|++|++++|.+.++.+. .+..+++|+.|++++|.+++..+ +..+++|++|++++|++
T Consensus 28 ~~~~~~~~L~~L~L~~n~l~~~~~~-------------~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l 92 (317)
T 3o53_A 28 SLRQSAWNVKELDLSGNPLSQISAA-------------DLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYV 92 (317)
T ss_dssp HHHTTGGGCSEEECTTSCCCCCCHH-------------HHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEE
T ss_pred HHhccCCCCCEEECcCCccCcCCHH-------------HhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcc
Confidence 3345567888888888887765432 34677888888888888876544 77888899999998888
Q ss_pred cccCCccccCCCCCcEEECcCCcccccCchhhhhcCCCCcEEEcCCCcccccCCccccCCCCCcEEEccCCcccccCCcc
Q 047929 518 SGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKC 597 (790)
Q Consensus 518 ~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~ 597 (790)
++.. ..++|++|++++|.+.+..+. .+++|++|++++|++++..+..+..+++|+.|++++|.+.+..|..
T Consensus 93 ~~l~-----~~~~L~~L~l~~n~l~~~~~~----~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 163 (317)
T 3o53_A 93 QELL-----VGPSIETLHAANNNISRVSCS----RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAE 163 (317)
T ss_dssp EEEE-----ECTTCCEEECCSSCCSEEEEC----CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGG
T ss_pred cccc-----CCCCcCEEECCCCccCCcCcc----ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHH
Confidence 7543 347889999999888754332 4678999999999998877778888899999999999888655443
Q ss_pred hhccccccccCCccccceeecccccccceeeeeeeeeccchhhhhhcccceeEEEccCccCCCCCCcccccCCCCCEEeC
Q 047929 598 INNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGEIPMEVTNLKGLQSLNL 677 (790)
Q Consensus 598 l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 677 (790)
+. ..++.|++|++++|.+.+. +. ...+++|++|++
T Consensus 164 ~~-------------------------------------------~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~L 198 (317)
T 3o53_A 164 LA-------------------------------------------ASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDL 198 (317)
T ss_dssp GG-------------------------------------------GGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEEC
T ss_pred Hh-------------------------------------------hccCcCCEEECCCCcCccc-cc-ccccccCCEEEC
Confidence 32 1134467899999999854 32 345899999999
Q ss_pred CCCcCCcCCCccccCCCCCCEEeCcCccCccccCccccCCCCCCEEECcCCccc-ccCCCC-CcCCccCCccccCC-ccc
Q 047929 678 SHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLSFLNHLNLSDNKLV-GKIPSS-TQLQSFGASSITGN-DLC 754 (790)
Q Consensus 678 ~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~-~~~p~~-~~~~sl~~l~~~~n-~l~ 754 (790)
++|.+++ +|..+..+++|++|++++|++. .+|..+..+++|+.|++++|++. +.+|.. ..+..|+.+.+.++ .+.
T Consensus 199 s~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~ 276 (317)
T 3o53_A 199 SSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLT 276 (317)
T ss_dssp CSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred CCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhcc
Confidence 9999985 4555899999999999999999 57888999999999999999998 555544 44677888888876 777
Q ss_pred CCCCCCCCccc
Q 047929 755 GAPLSNCTEKN 765 (790)
Q Consensus 755 ~~~~~~c~~~~ 765 (790)
+.....|....
T Consensus 277 ~~~~~~~~~~~ 287 (317)
T 3o53_A 277 GQNEEECTVPT 287 (317)
T ss_dssp SSSSCCCSSTT
T ss_pred CCchhccCCCc
Confidence 76666665443
No 65
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.90 E-value=3.3e-23 Score=231.10 Aligned_cols=284 Identities=25% Similarity=0.249 Sum_probs=186.9
Q ss_pred CCCCCCCCCCcccCceee--c----CCCCcEEEEEcCCCCCCccccccCcCCCCCCEEeCCCCCCCCCCcCccccCCCCC
Q 047929 25 LASWIGDVDCCEWGGVVC--N----NITGHVLELNLERSELGGKINPALVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNL 98 (790)
Q Consensus 25 ~~~w~~~~~~~~~~~~~c--~----~~~~~v~~L~L~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~l~~~~~~l~~L 98 (790)
.+.|...+++|.|.+..+ . -....+++|+++++.++ .+|..+. ++|++|++++|.+. .+|. .+++|
T Consensus 12 w~~W~~~~~~~~~~~r~~~~~~~~~c~~~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~--~lp~---~l~~L 83 (622)
T 3g06_A 12 WSAWRRAAPAEESRGRAAVVQKMRACLNNGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT--SLPA---LPPEL 83 (622)
T ss_dssp HHHHHHTCCGGGHHHHHHHHHHHHHHHHHCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS--CCCC---CCTTC
T ss_pred HHHHHhcCCcchhccccccCcccccccCCCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC--CCCC---cCCCC
Confidence 345655578899966432 1 01346899999999987 6776665 79999999999988 4666 57899
Q ss_pred CEEeCCCCcccccCCCCCCCCCCCcEEECcCCcccccccCccccCCCCCCcEEECCCCCCCCCchhHHhhCCCCCCCEEE
Q 047929 99 RYLNLSGAGFAGWIPHQLGNLSNLMHLDLSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLK 178 (790)
Q Consensus 99 ~~L~Ls~~~~~~~lp~~l~~l~~L~~L~ls~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~ 178 (790)
++|++++|++++ +|. .+++|++|++++|.+...+. .+++|++|+++
T Consensus 84 ~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~l~~------~l~~L~~L~L~------------------------ 129 (622)
T 3g06_A 84 RTLEVSGNQLTS-LPV---LPPGLLELSIFSNPLTHLPA------LPSGLCKLWIF------------------------ 129 (622)
T ss_dssp CEEEECSCCCSC-CCC---CCTTCCEEEECSCCCCCCCC------CCTTCCEEECC------------------------
T ss_pred CEEEcCCCcCCc-CCC---CCCCCCEEECcCCcCCCCCC------CCCCcCEEECC------------------------
Confidence 999999999886 666 67889999999887554322 33444555555
Q ss_pred ccCccccccCcccCcCCCCCCEEECCCCCCCCCCcchhccCCCCCcEEEccCCcCCCCCCccCCCCCCCcEEeCCCCcCC
Q 047929 179 LFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFN 258 (790)
Q Consensus 179 l~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~ 258 (790)
+|.+..++.. +++|++|++++|.+.. +|. .+.+|+.|++++|.+.+ +| ..+++|+.|++++|.+.
T Consensus 130 --~N~l~~lp~~----l~~L~~L~Ls~N~l~~--l~~---~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~ 194 (622)
T 3g06_A 130 --GNQLTSLPVL----PPGLQELSVSDNQLAS--LPA---LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLA 194 (622)
T ss_dssp --SSCCSCCCCC----CTTCCEEECCSSCCSC--CCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS
T ss_pred --CCCCCcCCCC----CCCCCEEECcCCcCCC--cCC---ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCC
Confidence 4444443321 2556666666665532 333 23456666666666653 33 33456666666666665
Q ss_pred ccccccccCCCCCCEEEccCcccccccCcccccCCCCCCEEEccCCCCCCCcchhhhhhhccccCCCCEEEccCCccccc
Q 047929 259 STISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQ 338 (790)
Q Consensus 259 ~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 338 (790)
+. +. .+++|+.|++++|.+. .++. .+++|+.|++++|.+...+ ..+++|+.|++++|.++.
T Consensus 195 ~l-~~---~~~~L~~L~L~~N~l~-~l~~----~~~~L~~L~Ls~N~L~~lp---------~~l~~L~~L~Ls~N~L~~- 255 (622)
T 3g06_A 195 SL-PT---LPSELYKLWAYNNRLT-SLPA----LPSGLKELIVSGNRLTSLP---------VLPSELKELMVSGNRLTS- 255 (622)
T ss_dssp CC-CC---CCTTCCEEECCSSCCS-SCCC----CCTTCCEEECCSSCCSCCC---------CCCTTCCEEECCSSCCSC-
T ss_pred CC-CC---ccchhhEEECcCCccc-ccCC----CCCCCCEEEccCCccCcCC---------CCCCcCcEEECCCCCCCc-
Confidence 42 22 2356666666666665 3332 2356777777777665432 234577888888887774
Q ss_pred cchhhccCCCCcEEEccCcccCCCCCcCcCCCCCCCEEECcCCcCCCcCC
Q 047929 339 LTNQLGLFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMIS 388 (790)
Q Consensus 339 ~~~~l~~l~~L~~L~L~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 388 (790)
+|. .+++|+.|++++|.+. .+|..+..+++|+.|++++|.+.+..+
T Consensus 256 lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~ 301 (622)
T 3g06_A 256 LPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTL 301 (622)
T ss_dssp CCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHH
T ss_pred CCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCH
Confidence 343 5678999999999888 667888889999999999998876543
No 66
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.90 E-value=1.8e-22 Score=203.69 Aligned_cols=215 Identities=22% Similarity=0.283 Sum_probs=138.1
Q ss_pred CCCcccCceeecCCCCcEEEEEcCCCCCCccccccCcCCCCCCEEeCCCCCCCCCCcCccccCCCCCCEEeCCCCccccc
Q 047929 32 VDCCEWGGVVCNNITGHVLELNLERSELGGKINPALVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGW 111 (790)
Q Consensus 32 ~~~~~~~~~~c~~~~~~v~~L~L~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~ 111 (790)
.++|.|.|+.|.- .+.++.++++++.++ .+|..+. +++++|++++|.+... .+..|.++++|++|++++|.++..
T Consensus 2 ~~~C~~~~~~C~c-~~~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~i 76 (270)
T 2o6q_A 2 EALCKKDGGVCSC-NNNKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSL-PSKAFHRLTKLRLLYLNDNKLQTL 76 (270)
T ss_dssp CCCBGGGTCSBEE-ETTTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCC-CTTSSSSCTTCCEEECCSSCCSCC
T ss_pred CccCCCCCCCCEe-CCCCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCee-CHHHhcCCCCCCEEECCCCccCee
Confidence 5789999998852 345678899988887 4565444 6788899998888855 455788888999999988888874
Q ss_pred CCCCCCCCCCCcEEECcCCcccccccCccccCCCCCCcEEECCCCCCCCCchhHHhhCCCCCCCEEEccCccccccCccc
Q 047929 112 IPHQLGNLSNLMHLDLSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLA 191 (790)
Q Consensus 112 lp~~l~~l~~L~~L~ls~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 191 (790)
.+..+..+++|++|++++|.+...+.. .+..+++|++|++++|.+..+++..
T Consensus 77 ~~~~~~~l~~L~~L~l~~n~l~~~~~~----------------------------~~~~l~~L~~L~l~~n~l~~~~~~~ 128 (270)
T 2o6q_A 77 PAGIFKELKNLETLWVTDNKLQALPIG----------------------------VFDQLVNLAELRLDRNQLKSLPPRV 128 (270)
T ss_dssp CTTTTSSCTTCCEEECCSSCCCCCCTT----------------------------TTTTCSSCCEEECCSSCCCCCCTTT
T ss_pred ChhhhcCCCCCCEEECCCCcCCcCCHh----------------------------HcccccCCCEEECCCCccCeeCHHH
Confidence 445567888888888887754322210 3445556666666666666665556
Q ss_pred CcCCCCCCEEECCCCCCCCCCcch-hccCCCCCcEEEccCCcCCCCCCccCCCCCCCcEEeCCCCcCCccccccccCCCC
Q 047929 192 SANFSSLNALDLSGNLFGKTSIPS-WVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDD 270 (790)
Q Consensus 192 l~~l~~L~~L~L~~~~l~~~~lp~-~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~ 270 (790)
+..+++|++|++++|.+.. +|. .+..+++|++|++++|.+.+..+..|..+++|++|++++|.+.+..+..+..+++
T Consensus 129 ~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 206 (270)
T 2o6q_A 129 FDSLTKLTYLSLGYNELQS--LPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEK 206 (270)
T ss_dssp TTTCTTCCEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT
T ss_pred hCcCcCCCEEECCCCcCCc--cCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccC
Confidence 6666666666666666533 232 2445566666666666555544444555566666666666555544444555555
Q ss_pred CCEEEccCccc
Q 047929 271 LEYLSLGYNRL 281 (790)
Q Consensus 271 L~~L~l~~~~l 281 (790)
|+.|++++|++
T Consensus 207 L~~L~l~~N~~ 217 (270)
T 2o6q_A 207 LKMLQLQENPW 217 (270)
T ss_dssp CCEEECCSSCB
T ss_pred CCEEEecCCCe
Confidence 55555555544
No 67
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.90 E-value=1.6e-26 Score=262.90 Aligned_cols=89 Identities=15% Similarity=0.076 Sum_probs=45.2
Q ss_pred CCCCCCCEEEccCCcccccCCccccC-CCCCcEEECcCCcccccCchhhhhcCCCCcEEEcCCCcccccCCc-cccCCCC
Q 047929 502 GTLTSLRSLNLRSNRLSGIIPVPFEN-CSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPI-QICHLSS 579 (790)
Q Consensus 502 ~~l~~L~~L~L~~n~i~~~~~~~l~~-l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~-~~~~l~~ 579 (790)
..+++|++|++++ .+++.....+.. +++|+.|++++|.+++..+..+...+++|++|++++|++++.... .+..+++
T Consensus 429 ~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~ 507 (594)
T 2p1m_B 429 EHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLET 507 (594)
T ss_dssp HHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGG
T ss_pred hhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCC
Confidence 3445566666654 333332222322 556666666666555444444434456666666666665432221 2233556
Q ss_pred CcEEEccCCccc
Q 047929 580 LQILDVAYNRLS 591 (790)
Q Consensus 580 L~~L~ls~n~l~ 591 (790)
|+.|++++|+++
T Consensus 508 L~~L~l~~~~~~ 519 (594)
T 2p1m_B 508 MRSLWMSSCSVS 519 (594)
T ss_dssp SSEEEEESSCCB
T ss_pred CCEEeeeCCCCC
Confidence 666666666553
No 68
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.89 E-value=2.8e-26 Score=260.82 Aligned_cols=236 Identities=15% Similarity=0.123 Sum_probs=122.1
Q ss_pred ccccCCCCCEEEccCCccCCCcccccccccccccCCCccCCCCCCcEEEccCCccccc-CCcCCCCCCCCCEEEccC---
Q 047929 439 WLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGS-IPISMGTLTSLRSLNLRS--- 514 (790)
Q Consensus 439 ~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~L~~--- 514 (790)
.+..+++|++|++++|.+.+.. +...+..+++|+.|++++| +.+. ++.....+++|++|++.+
T Consensus 284 ~~~~~~~L~~L~L~~~~l~~~~------------l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~ 350 (594)
T 2p1m_B 284 VYSVCSRLTTLNLSYATVQSYD------------LVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEP 350 (594)
T ss_dssp GHHHHTTCCEEECTTCCCCHHH------------HHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCT
T ss_pred HHHhhCCCCEEEccCCCCCHHH------------HHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcc
Confidence 3445667777777777643211 1112345667777777776 3321 111122366777777733
Q ss_pred ------CcccccCCccc-cCCCCCcEEECcCCcccccCchhhhhcCCCCcEEEcC--C----Cccccc-----CCccccC
Q 047929 515 ------NRLSGIIPVPF-ENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLR--S----NKLHGI-----FPIQICH 576 (790)
Q Consensus 515 ------n~i~~~~~~~l-~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~--~----n~~~~~-----~~~~~~~ 576 (790)
+.++......+ ..+++|+.|.+..|.+++..+..+...+++|+.|+++ + +.+++. ++..+..
T Consensus 351 ~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~ 430 (594)
T 2p1m_B 351 FVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEH 430 (594)
T ss_dssp TCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHH
T ss_pred cccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhh
Confidence 23332221122 2366777776666666655555554456777777776 2 333311 1111445
Q ss_pred CCCCcEEEccCCcccccCCcchhccccccccCCccccceeecccccccceeeeeeeeeccchhhhhhcccceeEEEccCc
Q 047929 577 LSSLQILDVAYNRLSGSVPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMN 656 (790)
Q Consensus 577 l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n 656 (790)
+++|+.|++++ .+++..+..+. ..++.|+.|+|++|
T Consensus 431 ~~~L~~L~L~~-~l~~~~~~~l~-------------------------------------------~~~~~L~~L~L~~~ 466 (594)
T 2p1m_B 431 CKDLRRLSLSG-LLTDKVFEYIG-------------------------------------------TYAKKMEMLSVAFA 466 (594)
T ss_dssp CTTCCEEECCS-SCCHHHHHHHH-------------------------------------------HHCTTCCEEEEESC
T ss_pred CCCccEEeecC-cccHHHHHHHH-------------------------------------------HhchhccEeeccCC
Confidence 66677777755 33322111111 11344567777777
Q ss_pred cCCCCCCccc-ccCCCCCEEeCCCCcCCcCCCc-cccCCCCCCEEeCcCccCccccCccc-cCCCCCCEEECcCCccc
Q 047929 657 NFSGEIPMEV-TNLKGLQSLNLSHNSFIGKIPE-TIGNMRSIESLDLSGNQISGKIPQSM-SSLSFLNHLNLSDNKLV 731 (790)
Q Consensus 657 ~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~l~~n~l~~~~p~~l-~~l~~L~~L~l~~n~l~ 731 (790)
.+++..+..+ ..+++|++|++++|.+++.... ....+++|++|++++|+++......+ ..++.|+...+..+...
T Consensus 467 ~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~~~ 544 (594)
T 2p1m_B 467 GDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERGAP 544 (594)
T ss_dssp CSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSSCG
T ss_pred CCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCCcc
Confidence 7654333333 4567777777777777543322 23446777777777777643322233 34555655555555433
No 69
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.89 E-value=1.5e-24 Score=223.90 Aligned_cols=206 Identities=21% Similarity=0.268 Sum_probs=110.7
Q ss_pred CCCCCcEEEccCCcccccCCcCC--CCCCCCCEEEccCCcccccCCccccCC-----CCCcEEECcCCcccccCchhhhh
Q 047929 479 NWPDLRVLNLGNNKFTGSIPISM--GTLTSLRSLNLRSNRLSGIIPVPFENC-----SQLVALDMGENEFVGNIPTWMGE 551 (790)
Q Consensus 479 ~l~~L~~L~l~~n~~~~~~~~~~--~~l~~L~~L~L~~n~i~~~~~~~l~~l-----~~L~~L~l~~n~~~~~~~~~~~~ 551 (790)
.+++|++|++++|.+++..|..+ ..+++|++|++++|++++. |..+..+ ++|++|++++|.+.+..|..+ .
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~-~ 170 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQV-R 170 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTC-C
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHh-c
Confidence 35566666666666665555543 5566666666666666655 4444444 566666666666553333333 2
Q ss_pred cCCCCcEEEcCCCccccc--CCccc--cCCCCCcEEEccCCcccccCCcchhccccccccCCccccceeeccccccccee
Q 047929 552 RFSRLRILNLRSNKLHGI--FPIQI--CHLSSLQILDVAYNRLSGSVPKCINNFTAMATIGSHHQVKAIYHASFENDYIV 627 (790)
Q Consensus 552 ~~~~L~~L~L~~n~~~~~--~~~~~--~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~ 627 (790)
.+++|++|++++|++.+. .+..+ ..+++|++|++++|.+.+. +...
T Consensus 171 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~----------------------------- 220 (312)
T 1wwl_A 171 VFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETP-SGVC----------------------------- 220 (312)
T ss_dssp CCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCH-HHHH-----------------------------
T ss_pred cCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcch-HHHH-----------------------------
Confidence 455666666666655432 11122 4556666666666655411 0000
Q ss_pred eeeeeeeccchhhhhhcccceeEEEccCccCCCCCC-cccccCCCCCEEeCCCCcCCcCCCccccCCCCCCEEeCcCccC
Q 047929 628 EEISLVMKGFMVEYNSILNLVRSIDISMNNFSGEIP-MEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQI 706 (790)
Q Consensus 628 ~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l 706 (790)
......++.|++|++++|.+.+..| ..+..+++|++|++++|.++ .+|..+. ++|++|++++|++
T Consensus 221 -----------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l 286 (312)
T 1wwl_A 221 -----------SALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRL 286 (312)
T ss_dssp -----------HHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCC
T ss_pred -----------HHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCC
Confidence 0000112344566666666665443 33445566666666666665 5555544 5666666666666
Q ss_pred ccccCccccCCCCCCEEECcCCcccc
Q 047929 707 SGKIPQSMSSLSFLNHLNLSDNKLVG 732 (790)
Q Consensus 707 ~~~~p~~l~~l~~L~~L~l~~n~l~~ 732 (790)
++. |. +..+++|++|++++|++.+
T Consensus 287 ~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 287 DRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred CCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 643 44 6666666666666666553
No 70
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.89 E-value=2.4e-24 Score=222.44 Aligned_cols=252 Identities=20% Similarity=0.270 Sum_probs=199.3
Q ss_pred cccCCCCCEEEccCCccCCCcccccccccccccCCCccCCCCCCcEEEccCCccc-ccCCcCCC-------CCCCCCEEE
Q 047929 440 LHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFT-GSIPISMG-------TLTSLRSLN 511 (790)
Q Consensus 440 ~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~~~~-------~l~~L~~L~ 511 (790)
+...++|+++++++|.+ .+ |..+ . ..|+.|++++|.+. ..++..+. .+++|++|+
T Consensus 39 ~~~~~~L~~l~l~~n~l-~~-p~~~-------------~--~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~ 101 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE-AD-LGQF-------------T--DIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELT 101 (312)
T ss_dssp EEEEEECTTHHHHCCTT-CC-CHHH-------------H--HHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEE
T ss_pred EccCCCceeEeeccccc-cc-HHHH-------------H--HHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEE
Confidence 44567788888888887 32 2211 1 12788888888884 33444443 689999999
Q ss_pred ccCCcccccCCccc--cCCCCCcEEECcCCcccccCchhhhhcC-----CCCcEEEcCCCcccccCCccccCCCCCcEEE
Q 047929 512 LRSNRLSGIIPVPF--ENCSQLVALDMGENEFVGNIPTWMGERF-----SRLRILNLRSNKLHGIFPIQICHLSSLQILD 584 (790)
Q Consensus 512 L~~n~i~~~~~~~l--~~l~~L~~L~l~~n~~~~~~~~~~~~~~-----~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ 584 (790)
+++|++++..|..+ ..+++|++|++++|.+.+. |..+. .+ ++|++|++++|++.+..+..+..+++|++|+
T Consensus 102 L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~-~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 179 (312)
T 1wwl_A 102 LENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLA-ELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLD 179 (312)
T ss_dssp EEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHH-HHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEE
T ss_pred ccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHH-HHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEE
Confidence 99999998888765 8999999999999999866 76654 44 8999999999999988889999999999999
Q ss_pred ccCCcccccC--CcchhccccccccCCccccceeecccccccceeeeeeeeeccchhhhhhcccceeEEEccCccCCC--
Q 047929 585 VAYNRLSGSV--PKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSG-- 660 (790)
Q Consensus 585 ls~n~l~~~~--p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~-- 660 (790)
+++|.+.+.+ |..+ ....++.|++|++++|.+.+
T Consensus 180 Ls~N~l~~~~~~~~~~------------------------------------------~~~~l~~L~~L~L~~N~l~~~~ 217 (312)
T 1wwl_A 180 LSDNPELGERGLISAL------------------------------------------CPLKFPTLQVLALRNAGMETPS 217 (312)
T ss_dssp CCSCTTCHHHHHHHHS------------------------------------------CTTSCTTCCEEECTTSCCCCHH
T ss_pred CCCCCcCcchHHHHHH------------------------------------------HhccCCCCCEEECCCCcCcchH
Confidence 9999976542 2111 00123456799999999983
Q ss_pred CCC-cccccCCCCCEEeCCCCcCCcCCC-ccccCCCCCCEEeCcCccCccccCccccCCCCCCEEECcCCcccccCCCCC
Q 047929 661 EIP-MEVTNLKGLQSLNLSHNSFIGKIP-ETIGNMRSIESLDLSGNQISGKIPQSMSSLSFLNHLNLSDNKLVGKIPSST 738 (790)
Q Consensus 661 ~~~-~~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~ 738 (790)
.++ ..+..+++|++|++++|.+++..| ..+..+++|++|++++|+++ .+|..+. ++|++|++++|++.+. |...
T Consensus 218 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~~~ 293 (312)
T 1wwl_A 218 GVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PSPD 293 (312)
T ss_dssp HHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CCTT
T ss_pred HHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hhHh
Confidence 122 334678999999999999998764 45677899999999999999 6787776 8999999999999876 7777
Q ss_pred cCCccCCccccCCcccCC
Q 047929 739 QLQSFGASSITGNDLCGA 756 (790)
Q Consensus 739 ~~~sl~~l~~~~n~l~~~ 756 (790)
.+.+|+.+++.+|++.+.
T Consensus 294 ~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 294 ELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp TSCEEEEEECTTCTTTCC
T ss_pred hCCCCCEEeccCCCCCCC
Confidence 789999999999988754
No 71
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.88 E-value=6.1e-21 Score=212.90 Aligned_cols=263 Identities=23% Similarity=0.246 Sum_probs=210.8
Q ss_pred CCCCEEeCCCCCCCCCCcCccccCCCCCCEEeCCCCcccccCCCCCCCCCCCcEEECcCCcccccccCccccCCCCCCcE
Q 047929 71 KHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHLDLSGSYYELRVEDISWLAGPSLLEH 150 (790)
Q Consensus 71 ~~L~~L~Ls~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~ls~~~~~~~~~~~~~l~~l~~L~~ 150 (790)
..+++|+++++.+. .+|..+. ++|++|++++|.++. +|. .+++|++|++++|.+...+.
T Consensus 40 ~~l~~L~ls~n~L~--~lp~~l~--~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~~lp~------------- 98 (622)
T 3g06_A 40 NGNAVLNVGESGLT--TLPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTSLPV------------- 98 (622)
T ss_dssp HCCCEEECCSSCCS--CCCSCCC--TTCSEEEECSCCCSC-CCC---CCTTCCEEEECSCCCSCCCC-------------
T ss_pred CCCcEEEecCCCcC--ccChhhC--CCCcEEEecCCCCCC-CCC---cCCCCCEEEcCCCcCCcCCC-------------
Confidence 46899999999998 5787665 899999999999886 666 57889999998886542111
Q ss_pred EECCCCCCCCCchhHHhhCCCCCCCEEEccCccccccCcccCcCCCCCCEEECCCCCCCCCCcchhccCCCCCcEEEccC
Q 047929 151 LDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSS 230 (790)
Q Consensus 151 L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L~l~~ 230 (790)
.+++|++|++++|.+..++. .+++|+.|++++|.++ .+|.. +++|++|++++
T Consensus 99 -------------------~l~~L~~L~Ls~N~l~~l~~----~l~~L~~L~L~~N~l~--~lp~~---l~~L~~L~Ls~ 150 (622)
T 3g06_A 99 -------------------LPPGLLELSIFSNPLTHLPA----LPSGLCKLWIFGNQLT--SLPVL---PPGLQELSVSD 150 (622)
T ss_dssp -------------------CCTTCCEEEECSCCCCCCCC----CCTTCCEEECCSSCCS--CCCCC---CTTCCEEECCS
T ss_pred -------------------CCCCCCEEECcCCcCCCCCC----CCCCcCEEECCCCCCC--cCCCC---CCCCCEEECcC
Confidence 45778888888888877655 5689999999999985 46764 48999999999
Q ss_pred CcCCCCCCccCCCCCCCcEEeCCCCcCCccccccccCCCCCCEEEccCcccccccCcccccCCCCCCEEEccCCCCCCCc
Q 047929 231 NIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQDI 310 (790)
Q Consensus 231 ~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 310 (790)
|.+.+ +|. .+++|+.|++++|.+... | ..+++|+.|++++|.+.+ ++. .+++|+.|++++|.+...+
T Consensus 151 N~l~~-l~~---~~~~L~~L~L~~N~l~~l-~---~~~~~L~~L~Ls~N~l~~-l~~----~~~~L~~L~L~~N~l~~l~ 217 (622)
T 3g06_A 151 NQLAS-LPA---LPSELCKLWAYNNQLTSL-P---MLPSGLQELSVSDNQLAS-LPT----LPSELYKLWAYNNRLTSLP 217 (622)
T ss_dssp SCCSC-CCC---CCTTCCEEECCSSCCSCC-C---CCCTTCCEEECCSSCCSC-CCC----CCTTCCEEECCSSCCSSCC
T ss_pred CcCCC-cCC---ccCCCCEEECCCCCCCCC-c---ccCCCCcEEECCCCCCCC-CCC----ccchhhEEECcCCcccccC
Confidence 99985 454 357899999999999874 3 457899999999999874 443 3488999999999987543
Q ss_pred chhhhhhhccccCCCCEEEccCCccccccchhhccCCCCcEEEccCcccCCCCCcCcCCCCCCCEEECcCCcCCCcCChh
Q 047929 311 SEILDIISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMISEI 390 (790)
Q Consensus 311 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~ 390 (790)
. .+++|+.|++++|.+++ +| ..+++|+.|++++|.++ .+|. .+++|+.|++++|.++.. +.
T Consensus 218 ~---------~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~~l-p~- 278 (622)
T 3g06_A 218 A---------LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLTRL-PE- 278 (622)
T ss_dssp C---------CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCCSC-CG-
T ss_pred C---------CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCCcC-CH-
Confidence 2 24789999999999986 44 45689999999999998 4554 678999999999999855 33
Q ss_pred hhccccccceeecCCCcceeecCC
Q 047929 391 HFGNLTELAFFYANGNSVNFKINS 414 (790)
Q Consensus 391 ~~~~l~~L~~l~l~~~~~~~~~~~ 414 (790)
.+..+++|+.+++.+|.+....+.
T Consensus 279 ~l~~l~~L~~L~L~~N~l~~~~~~ 302 (622)
T 3g06_A 279 SLIHLSSETTVNLEGNPLSERTLQ 302 (622)
T ss_dssp GGGGSCTTCEEECCSCCCCHHHHH
T ss_pred HHhhccccCEEEecCCCCCCcCHH
Confidence 588999999999999988765443
No 72
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.88 E-value=6e-22 Score=200.91 Aligned_cols=211 Identities=22% Similarity=0.221 Sum_probs=158.3
Q ss_pred CCCcEEEccCCcccccCCcCCCCCCCCCEEEccCCcccccCCccccCCCCCcEEECcCCcccccCchhhhhcCCCCcEEE
Q 047929 481 PDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILN 560 (790)
Q Consensus 481 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ 560 (790)
++|++|++++|.+++..+..|..+++|++|++++|.+..+.+..|..+++|++|++++|.+.+..+..+ ..+++|++|+
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~ 106 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAF-SGLSSLQKLV 106 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTT-TTCTTCCEEE
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhh-cCCccccEEE
Confidence 467777777777776666667777788888888887777777777777888888888887775444444 3677888888
Q ss_pred cCCCcccccCCccccCCCCCcEEEccCCccccc-CCcchhccccccccCCccccceeecccccccceeeeeeeeeccchh
Q 047929 561 LRSNKLHGIFPIQICHLSSLQILDVAYNRLSGS-VPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMV 639 (790)
Q Consensus 561 L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~-~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 639 (790)
+++|++.+..+..+..+++|++|++++|.+.+. +|..+.++++
T Consensus 107 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~------------------------------------ 150 (276)
T 2z62_A 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTN------------------------------------ 150 (276)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTT------------------------------------
T ss_pred CCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCC------------------------------------
Confidence 888887766666677888888888888887653 4655554443
Q ss_pred hhhhcccceeEEEccCccCCCCCCcccccCCCCC----EEeCCCCcCCcCCCccccCCCCCCEEeCcCccCccccCcccc
Q 047929 640 EYNSILNLVRSIDISMNNFSGEIPMEVTNLKGLQ----SLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMS 715 (790)
Q Consensus 640 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~----~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~ 715 (790)
|++|++++|++.+..+..+..+++|+ +|++++|.+++..+..+. ..+|++|++++|++.+..+..+.
T Consensus 151 --------L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~ 221 (276)
T 2z62_A 151 --------LEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFD 221 (276)
T ss_dssp --------CCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTT
T ss_pred --------CCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhc
Confidence 45788888888766666666666666 889999998866555554 44899999999999977777788
Q ss_pred CCCCCCEEECcCCcccccCCCC
Q 047929 716 SLSFLNHLNLSDNKLVGKIPSS 737 (790)
Q Consensus 716 ~l~~L~~L~l~~n~l~~~~p~~ 737 (790)
.+++|++|++++|++.+..|..
T Consensus 222 ~l~~L~~L~l~~N~~~c~c~~l 243 (276)
T 2z62_A 222 RLTSLQKIWLHTNPWDCSCPRI 243 (276)
T ss_dssp TCCSCCEEECCSSCBCCCTTTT
T ss_pred ccccccEEEccCCcccccCCch
Confidence 9999999999999999877654
No 73
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.88 E-value=5e-23 Score=225.55 Aligned_cols=234 Identities=18% Similarity=0.229 Sum_probs=151.1
Q ss_pred CCCCEEEccCCccCCCcccccccccccccCCCccCCCCCCcEEEccCCcccccCCcCCCCCCCCCEEEccCCcccccCCc
Q 047929 444 KHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPV 523 (790)
Q Consensus 444 ~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~ 523 (790)
++|++|++++|.+.++.+ ..+..+++|++|++++|.+++..| +..+++|++|++++|.+++..+
T Consensus 34 ~~L~~L~Ls~n~l~~~~~-------------~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~- 97 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISA-------------ADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV- 97 (487)
T ss_dssp GGCCEEECCSSCCCCCCG-------------GGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-
T ss_pred CCccEEEeeCCcCCCCCH-------------HHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-
Confidence 456666666666654332 234556667777777776665443 6666777777777777664332
Q ss_pred cccCCCCCcEEECcCCcccccCchhhhhcCCCCcEEEcCCCcccccCCccccCCCCCcEEEccCCcccccCCcchh-ccc
Q 047929 524 PFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCIN-NFT 602 (790)
Q Consensus 524 ~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~-~l~ 602 (790)
.++|+.|++++|.+.+..+. .+++|+.|++++|.+++..|..+..+++|+.|++++|.+++..|..+. .+
T Consensus 98 ----~~~L~~L~L~~N~l~~~~~~----~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l- 168 (487)
T 3oja_A 98 ----GPSIETLHAANNNISRVSCS----RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASS- 168 (487)
T ss_dssp ----CTTCCEEECCSSCCCCEEEC----CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGT-
T ss_pred ----CCCcCEEECcCCcCCCCCcc----ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhC-
Confidence 26777777777776643332 356777777777777776666677777777777777777765554432 22
Q ss_pred cccccCCccccceeecccccccceeeeeeeeeccchhhhhhcccceeEEEccCccCCCCCCcccccCCCCCEEeCCCCcC
Q 047929 603 AMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSF 682 (790)
Q Consensus 603 ~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 682 (790)
+.|+.|+|++|.+++..+ ...+++|++|++++|.+
T Consensus 169 -------------------------------------------~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l 203 (487)
T 3oja_A 169 -------------------------------------------DTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKL 203 (487)
T ss_dssp -------------------------------------------TTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCC
T ss_pred -------------------------------------------CcccEEecCCCccccccc--cccCCCCCEEECCCCCC
Confidence 234577777777765422 33577888888888887
Q ss_pred CcCCCccccCCCCCCEEeCcCccCccccCccccCCCCCCEEECcCCccc-ccCCCC-CcCCccCCcccc
Q 047929 683 IGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLSFLNHLNLSDNKLV-GKIPSS-TQLQSFGASSIT 749 (790)
Q Consensus 683 ~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~-~~~p~~-~~~~sl~~l~~~ 749 (790)
++. |..+..+++|+.|++++|.+.+ +|..+..+++|+.|++++|++. +.+|.. ..+..++.+.+.
T Consensus 204 ~~~-~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 204 AFM-GPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp CEE-CGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred CCC-CHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 754 3447777888888888888874 6667777788888888888877 444432 334445555554
No 74
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.88 E-value=1.8e-21 Score=196.36 Aligned_cols=206 Identities=21% Similarity=0.299 Sum_probs=146.3
Q ss_pred CCcEEEccCCcccccCCcCCCCCCCCCEEEccCCcccccCCccccCCCCCcEEECcCCcccccCchhhhhcCCCCcEEEc
Q 047929 482 DLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNL 561 (790)
Q Consensus 482 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L 561 (790)
..+.++++++.++ .+|..+. +++++|++++|+++.+.+..|..+++|++|++++|.+. .++..++..+++|++|++
T Consensus 17 ~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 17 NKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS-CCCTTTTSSCTTCCEEEC
T ss_pred CCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC-eeChhhhcCCCCCCEEEC
Confidence 3455666666655 3443332 45666666666666655556666666666666666665 445444445667777777
Q ss_pred CCCcccccCCccccCCCCCcEEEccCCcccccCCcchhccccccccCCccccceeecccccccceeeeeeeeeccchhhh
Q 047929 562 RSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEY 641 (790)
Q Consensus 562 ~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 641 (790)
++|++++..+..+..+++|++|++++|.+++..+..+..+++
T Consensus 93 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-------------------------------------- 134 (270)
T 2o6q_A 93 TDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTK-------------------------------------- 134 (270)
T ss_dssp CSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTT--------------------------------------
T ss_pred CCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcC--------------------------------------
Confidence 777776655556677777777777777776555544444333
Q ss_pred hhcccceeEEEccCccCCCCCCcccccCCCCCEEeCCCCcCCcCCCccccCCCCCCEEeCcCccCccccCccccCCCCCC
Q 047929 642 NSILNLVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLSFLN 721 (790)
Q Consensus 642 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~ 721 (790)
|++|++++|.+.+..+..+..+++|++|++++|.+++..+..|..+++|++|++++|++.+..+..+..+++|+
T Consensus 135 ------L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 208 (270)
T 2o6q_A 135 ------LTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLK 208 (270)
T ss_dssp ------CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred ------CCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCC
Confidence 45777788877755555678899999999999999877777789999999999999999977777788999999
Q ss_pred EEECcCCcccccCC
Q 047929 722 HLNLSDNKLVGKIP 735 (790)
Q Consensus 722 ~L~l~~n~l~~~~p 735 (790)
.|++++|++....+
T Consensus 209 ~L~l~~N~~~c~c~ 222 (270)
T 2o6q_A 209 MLQLQENPWDCTCN 222 (270)
T ss_dssp EEECCSSCBCCSSS
T ss_pred EEEecCCCeeCCCc
Confidence 99999999876554
No 75
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.87 E-value=6e-22 Score=216.96 Aligned_cols=218 Identities=20% Similarity=0.183 Sum_probs=185.9
Q ss_pred CCCCCcEEEccCCcccccCCcCCCCCCCCCEEEccCCcccccCCccccCCCCCcEEECcCCcccccCchhhhhcCCCCcE
Q 047929 479 NWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRI 558 (790)
Q Consensus 479 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~ 558 (790)
.+++|+.|++++|.+++..|..|..+++|++|++++|.+++..+ +..+++|++|++++|.+.+ +| ..++|++
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-----~~~~L~~ 103 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE-LL-----VGPSIET 103 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEE-EE-----ECTTCCE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCC-CC-----CCCCcCE
Confidence 45689999999999998778889999999999999999987665 8999999999999999874 33 2489999
Q ss_pred EEcCCCcccccCCccccCCCCCcEEEccCCcccccCCcchhccccccccCCccccceeecccccccceeeeeeeeeccch
Q 047929 559 LNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFM 638 (790)
Q Consensus 559 L~L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 638 (790)
|++++|.+++..+. .+++|+.|++++|.+++..|..+.++++
T Consensus 104 L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~----------------------------------- 145 (487)
T 3oja_A 104 LHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSR----------------------------------- 145 (487)
T ss_dssp EECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSS-----------------------------------
T ss_pred EECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCC-----------------------------------
Confidence 99999999876554 4689999999999999777766655444
Q ss_pred hhhhhcccceeEEEccCccCCCCCCcccc-cCCCCCEEeCCCCcCCcCCCccccCCCCCCEEeCcCccCccccCccccCC
Q 047929 639 VEYNSILNLVRSIDISMNNFSGEIPMEVT-NLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSL 717 (790)
Q Consensus 639 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l 717 (790)
|+.|+|++|.+++..|..+. .+++|++|+|++|.+++. | .+..+++|+.|++++|.+++. |..+..+
T Consensus 146 ---------L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l 213 (487)
T 3oja_A 146 ---------VQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAFM-GPEFQSA 213 (487)
T ss_dssp ---------EEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCEE-CGGGGGG
T ss_pred ---------CCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-c-ccccCCCCCEEECCCCCCCCC-CHhHcCC
Confidence 56899999999988888775 799999999999999866 3 345689999999999999964 5559999
Q ss_pred CCCCEEECcCCcccccCCCCCcCCccCCccccCCccc
Q 047929 718 SFLNHLNLSDNKLVGKIPSSTQLQSFGASSITGNDLC 754 (790)
Q Consensus 718 ~~L~~L~l~~n~l~~~~p~~~~~~sl~~l~~~~n~l~ 754 (790)
++|+.|++++|++.+.++..+.+.+|+.+++.+|.+.
T Consensus 214 ~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 214 AGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp TTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBC
T ss_pred CCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCc
Confidence 9999999999999975555566889999999999554
No 76
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.87 E-value=5e-21 Score=194.13 Aligned_cols=215 Identities=25% Similarity=0.259 Sum_probs=149.2
Q ss_pred cccccCcCCCCCCEEeCCCCCCCCCCcCccccCCCCCCEEeCCCCcccccCCCCCCCCCCCcEEECcCCcccccccCccc
Q 047929 62 KINPALVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHLDLSGSYYELRVEDISW 141 (790)
Q Consensus 62 ~~~~~l~~l~~L~~L~Ls~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~ls~~~~~~~~~~~~~ 141 (790)
.+|..+. ++|++|++++|.+.+. .+..+.++++|++|++++|.+.+..+..+..+++|++|++++|.+.....
T Consensus 21 ~ip~~l~--~~l~~L~ls~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---- 93 (276)
T 2z62_A 21 KIPDNLP--FSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL---- 93 (276)
T ss_dssp SCCSSSC--TTCCEEECTTCCCCEE-CTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECT----
T ss_pred ccCCCCC--CCccEEECCCCccccc-CHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccCh----
Confidence 3444443 4688888888887754 34467788888888888888877666677888888888888776432221
Q ss_pred cCCCCCCcEEECCCCCCCCCchhHHhhCCCCCCCEEEccCccccccCcccCcCCCCCCEEECCCCCCCCCCcchhccCCC
Q 047929 142 LAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLS 221 (790)
Q Consensus 142 l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~lp~~l~~l~ 221 (790)
..+.++++|++|++++|.+..+.+..+..+++|++|++++|.+....+|..+..++
T Consensus 94 ------------------------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~ 149 (276)
T 2z62_A 94 ------------------------GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT 149 (276)
T ss_dssp ------------------------TTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCT
T ss_pred ------------------------hhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCC
Confidence 14556667777777777777766667777888888888888776555677777788
Q ss_pred CCcEEEccCCcCCCCCCccCCCCCCCc----EEeCCCCcCCccccccccCCCCCCEEEccCcccccccCcccccCCCCCC
Q 047929 222 DLVFLDLSSNIFRGPIPDGFKNLTSLR----YLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIK 297 (790)
Q Consensus 222 ~L~~L~l~~~~~~~~~p~~~~~l~~L~----~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~l~~L~ 297 (790)
+|++|++++|++.+..+..+..+++|+ +|++++|.+.+..+..+.. .+|+.|++++|.+++ ++...+..+++|+
T Consensus 150 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~-~~~~~~~~l~~L~ 227 (276)
T 2z62_A 150 NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKS-VPDGIFDRLTSLQ 227 (276)
T ss_dssp TCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSC-CCTTTTTTCCSCC
T ss_pred CCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCC-CcccEEECCCCceee-cCHhHhccccccc
Confidence 888888888887766556666665555 7788888777655544433 467788888777763 3443366777777
Q ss_pred EEEccCCCCCCC
Q 047929 298 TLDLSFNELGQD 309 (790)
Q Consensus 298 ~L~l~~~~~~~~ 309 (790)
.|++++|.+...
T Consensus 228 ~L~l~~N~~~c~ 239 (276)
T 2z62_A 228 KIWLHTNPWDCS 239 (276)
T ss_dssp EEECCSSCBCCC
T ss_pred EEEccCCccccc
Confidence 777777776543
No 77
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.86 E-value=1.2e-20 Score=191.90 Aligned_cols=202 Identities=19% Similarity=0.274 Sum_probs=125.6
Q ss_pred CCCCCcEEEccCCcccccCCcCCCCCCCCCEEEccCCcccccCCccccCCCCCcEEECcCCcccccCchhhhhcCCCCcE
Q 047929 479 NWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRI 558 (790)
Q Consensus 479 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~ 558 (790)
.++++++++++++.++ .+|..+. ++++.|++++|.+++..+..|..+++|+.|++++|.+.+ ++.. ..+++|++
T Consensus 8 ~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~--~~l~~L~~ 81 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQVD--GTLPVLGT 81 (290)
T ss_dssp CSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EECC--SCCTTCCE
T ss_pred ccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCc-ccCC--CCCCcCCE
Confidence 3445555555555554 2333332 455555555555555555555555556666665555542 2221 24566666
Q ss_pred EEcCCCcccccCCccccCCCCCcEEEccCCcccccCCcchhccccccccCCccccceeecccccccceeeeeeeeeccch
Q 047929 559 LNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFM 638 (790)
Q Consensus 559 L~L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 638 (790)
|++++|+++ .+|..+..+++|+.|++++|.+++..|..+.++++
T Consensus 82 L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~----------------------------------- 125 (290)
T 1p9a_G 82 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGE----------------------------------- 125 (290)
T ss_dssp EECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTT-----------------------------------
T ss_pred EECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCC-----------------------------------
Confidence 666666665 34555666667777777777666544444444433
Q ss_pred hhhhhcccceeEEEccCccCCCCCCcccccCCCCCEEeCCCCcCCcCCCccccCCCCCCEEeCcCccCccccCccccCCC
Q 047929 639 VEYNSILNLVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLS 718 (790)
Q Consensus 639 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~ 718 (790)
|++|++++|.+.+..+..|..+++|++|++++|+++...+..|..+++|++|++++|++. .+|..+..+.
T Consensus 126 ---------L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~ 195 (290)
T 1p9a_G 126 ---------LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSH 195 (290)
T ss_dssp ---------CCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTC
T ss_pred ---------CCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccc
Confidence 346777777776555556677788888888888887555556677888888888888887 5677777777
Q ss_pred CCCEEECcCCcccc
Q 047929 719 FLNHLNLSDNKLVG 732 (790)
Q Consensus 719 ~L~~L~l~~n~l~~ 732 (790)
+|+.|++++|++..
T Consensus 196 ~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 196 LLPFAFLHGNPWLC 209 (290)
T ss_dssp CCSEEECCSCCBCC
T ss_pred cCCeEEeCCCCccC
Confidence 88888888887754
No 78
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.85 E-value=8.6e-21 Score=191.56 Aligned_cols=201 Identities=20% Similarity=0.245 Sum_probs=123.9
Q ss_pred CCCcEEEccCCcccccCCcCCCCCCCCCEEEccCCcccccCCccccCCCCCcEEECcCCcccccCchhhhhcCCCCcEEE
Q 047929 481 PDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILN 560 (790)
Q Consensus 481 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ 560 (790)
++|+.|++++|.+.. ++ .+..+++|++|++++|.+.+. ..+..+++|++|++++|.+.+ ++...+..+++|++|+
T Consensus 41 ~~L~~L~l~~~~i~~-~~-~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~ 115 (272)
T 3rfs_A 41 NSIDQIIANNSDIKS-VQ-GIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQS-LPNGVFDKLTNLKELV 115 (272)
T ss_dssp TTCCEEECTTSCCCC-CT-TGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCC-CCTTTTTTCTTCCEEE
T ss_pred cceeeeeeCCCCccc-cc-ccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCc-cChhHhcCCcCCCEEE
Confidence 344444444444431 11 234445555555555554432 244455555555555555542 2222223455666666
Q ss_pred cCCCcccccCCccccCCCCCcEEEccCCcccccCCcchhccccccccCCccccceeecccccccceeeeeeeeeccchhh
Q 047929 561 LRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVE 640 (790)
Q Consensus 561 L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 640 (790)
+++|++++..+..+..+++|++|++++|.+.+..+..+..+++
T Consensus 116 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~------------------------------------- 158 (272)
T 3rfs_A 116 LVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTN------------------------------------- 158 (272)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT-------------------------------------
T ss_pred CCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCcc-------------------------------------
Confidence 6666665555555566666666666666666444433333332
Q ss_pred hhhcccceeEEEccCccCCCCCCcccccCCCCCEEeCCCCcCCcCCCccccCCCCCCEEeCcCccCccccCccccCCCCC
Q 047929 641 YNSILNLVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLSFL 720 (790)
Q Consensus 641 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L 720 (790)
|+.|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|++.+. +++|
T Consensus 159 -------L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l 224 (272)
T 3rfs_A 159 -------LTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGI 224 (272)
T ss_dssp -------CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTT
T ss_pred -------CCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHH
Confidence 34677777777655566677888899999999988877777788889999999999987744 3468
Q ss_pred CEEECcCCcccccCCCC
Q 047929 721 NHLNLSDNKLVGKIPSS 737 (790)
Q Consensus 721 ~~L~l~~n~l~~~~p~~ 737 (790)
+.|+++.|.+.|.+|..
T Consensus 225 ~~l~~~~n~~~g~ip~~ 241 (272)
T 3rfs_A 225 RYLSEWINKHSGVVRNS 241 (272)
T ss_dssp HHHHHHHHHTGGGBBCT
T ss_pred HHHHHHHHhCCCcccCc
Confidence 88899999999988876
No 79
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.85 E-value=2.5e-20 Score=188.17 Aligned_cols=217 Identities=18% Similarity=0.211 Sum_probs=180.3
Q ss_pred CCcEEEccCCcccccCCcCCCCCCCCCEEEccCCcccccCCccccCCCCCcEEECcCCcccccCchhhhhcCCCCcEEEc
Q 047929 482 DLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNL 561 (790)
Q Consensus 482 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L 561 (790)
.+..+++.++.+.+.. ....+++|+.|++++|.+... ..+..+++|++|++++|.+.+ ++ .+ ..+++|++|++
T Consensus 20 ~l~~l~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~-~~-~l-~~l~~L~~L~L 92 (272)
T 3rfs_A 20 ETIKANLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHD-IS-AL-KELTNLTYLIL 92 (272)
T ss_dssp HHHHHHHTCSCTTSEE--CHHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCC-CG-GG-TTCTTCCEEEC
T ss_pred HHHHHHhcCccccccc--ccccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCC-ch-hh-cCCCCCCEEEC
Confidence 3444555555555332 345678999999999998854 358889999999999999875 43 33 47899999999
Q ss_pred CCCcccccCCccccCCCCCcEEEccCCcccccCCcchhccccccccCCccccceeecccccccceeeeeeeeeccchhhh
Q 047929 562 RSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEY 641 (790)
Q Consensus 562 ~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 641 (790)
++|.+++..+..+..+++|++|++++|.+.+..+..+..+++
T Consensus 93 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-------------------------------------- 134 (272)
T 3rfs_A 93 TGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTN-------------------------------------- 134 (272)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTT--------------------------------------
T ss_pred CCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCC--------------------------------------
Confidence 999999888878899999999999999998666655555544
Q ss_pred hhcccceeEEEccCccCCCCCCcccccCCCCCEEeCCCCcCCcCCCccccCCCCCCEEeCcCccCccccCccccCCCCCC
Q 047929 642 NSILNLVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLSFLN 721 (790)
Q Consensus 642 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~ 721 (790)
|++|++++|.+.+..+..+..+++|++|++++|.+++..+..|..+++|++|++++|++.+..|..+..+++|+
T Consensus 135 ------L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 208 (272)
T 3rfs_A 135 ------LTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQ 208 (272)
T ss_dssp ------CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred ------CCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCC
Confidence 56899999999977777789999999999999999988777889999999999999999988888899999999
Q ss_pred EEECcCCcccccCCCCCcCCccCCccccCCcccC
Q 047929 722 HLNLSDNKLVGKIPSSTQLQSFGASSITGNDLCG 755 (790)
Q Consensus 722 ~L~l~~n~l~~~~p~~~~~~sl~~l~~~~n~l~~ 755 (790)
.|++++|++.+.+| .++.+.+.+|.+.|
T Consensus 209 ~L~l~~N~~~~~~~------~l~~l~~~~n~~~g 236 (272)
T 3rfs_A 209 YIWLHDNPWDCTCP------GIRYLSEWINKHSG 236 (272)
T ss_dssp EEECCSSCBCCCTT------TTHHHHHHHHHTGG
T ss_pred EEEccCCCccccCc------HHHHHHHHHHhCCC
Confidence 99999999987766 46677777776665
No 80
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.84 E-value=8.3e-20 Score=185.60 Aligned_cols=202 Identities=21% Similarity=0.233 Sum_probs=169.5
Q ss_pred CCCCCCCCEEEccCCcccccCCccccCCCCCcEEECcCCcccccCchhhhhcCCCCcEEEcCCCcccccCCccccCCCCC
Q 047929 501 MGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSL 580 (790)
Q Consensus 501 ~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L 580 (790)
+..+++++.++++++.++.+.+ .+. ++++.|++++|.+.+..+..+ ..+++|++|++++|.+++..+. ..+++|
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~-~~~--~~l~~L~L~~N~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~--~~l~~L 79 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPP-DLP--KDTTILHLSENLLYTFSLATL-MPYTRLTQLNLDRAELTKLQVD--GTLPVL 79 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCS-CCC--TTCCEEECTTSCCSEEEGGGG-TTCTTCCEEECTTSCCCEEECC--SCCTTC
T ss_pred ccccCCccEEECCCCCCCcCCC-CCC--CCCCEEEcCCCcCCccCHHHh-hcCCCCCEEECCCCccCcccCC--CCCCcC
Confidence 4567899999999999986543 332 689999999999986555555 4799999999999999876543 789999
Q ss_pred cEEEccCCcccccCCcchhccccccccCCccccceeecccccccceeeeeeeeeccchhhhhhcccceeEEEccCccCCC
Q 047929 581 QILDVAYNRLSGSVPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSG 660 (790)
Q Consensus 581 ~~L~ls~n~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~ 660 (790)
+.|++++|.+. .+|..+..++ .|++|++++|.+++
T Consensus 80 ~~L~Ls~N~l~-~l~~~~~~l~--------------------------------------------~L~~L~l~~N~l~~ 114 (290)
T 1p9a_G 80 GTLDLSHNQLQ-SLPLLGQTLP--------------------------------------------ALTVLDVSFNRLTS 114 (290)
T ss_dssp CEEECCSSCCS-SCCCCTTTCT--------------------------------------------TCCEEECCSSCCCC
T ss_pred CEEECCCCcCC-cCchhhccCC--------------------------------------------CCCEEECCCCcCcc
Confidence 99999999987 5565544443 45789999999997
Q ss_pred CCCcccccCCCCCEEeCCCCcCCcCCCccccCCCCCCEEeCcCccCccccCccccCCCCCCEEECcCCcccccCCCCCcC
Q 047929 661 EIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLSFLNHLNLSDNKLVGKIPSSTQL 740 (790)
Q Consensus 661 ~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~~ 740 (790)
..+..|..+++|++|++++|.+++..+..|..+++|+.|++++|++....+..|..+++|+.|++++|++...++.....
T Consensus 115 l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~ 194 (290)
T 1p9a_G 115 LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGS 194 (290)
T ss_dssp CCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred cCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhccc
Confidence 77788999999999999999999877788899999999999999999776777899999999999999998544444667
Q ss_pred CccCCccccCCcc
Q 047929 741 QSFGASSITGNDL 753 (790)
Q Consensus 741 ~sl~~l~~~~n~l 753 (790)
.+|+.+.+.+|++
T Consensus 195 ~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 195 HLLPFAFLHGNPW 207 (290)
T ss_dssp CCCSEEECCSCCB
T ss_pred ccCCeEEeCCCCc
Confidence 7899999999954
No 81
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.84 E-value=2.4e-22 Score=210.60 Aligned_cols=270 Identities=19% Similarity=0.130 Sum_probs=155.1
Q ss_pred CCcccCceeecCCCCcEEEEEcCCCCCCccccccCcCC--CCCCEEeCCCCCCCCCCcCccccCCCCCCEEeCCCCcccc
Q 047929 33 DCCEWGGVVCNNITGHVLELNLERSELGGKINPALVDL--KHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAG 110 (790)
Q Consensus 33 ~~~~~~~~~c~~~~~~v~~L~L~~~~~~~~~~~~l~~l--~~L~~L~Ls~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~ 110 (790)
-|..|.++.++ +..++.++++++.+. +..+.++ +++++|++++|.+.+. .+ .+.++++|++|++++|.+++
T Consensus 35 vc~~W~~~~~~--~~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~-~~-~~~~~~~L~~L~L~~~~l~~ 107 (336)
T 2ast_B 35 VCKRWYRLASD--ESLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQP-LA-EHFSPFRVQHMDLSNSVIEV 107 (336)
T ss_dssp SCHHHHHHHTC--STTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSC-CC-SCCCCBCCCEEECTTCEECH
T ss_pred HHHHHHHHhcC--chhheeeccccccCC---HHHHHhhhhccceEEEcCCcccccc-ch-hhccCCCCCEEEccCCCcCH
Confidence 35579888875 456889999998775 3456666 8999999999988854 33 46678999999999998876
Q ss_pred c-CCCCCCCCCCCcEEECcCCcccccccCccccCCCCCCcEEECCCCCCCCCchhHHhhCCCCCCCEEEccCccccccCc
Q 047929 111 W-IPHQLGNLSNLMHLDLSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAP 189 (790)
Q Consensus 111 ~-lp~~l~~l~~L~~L~ls~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 189 (790)
. +|..+..+++|++|++++|.+. ......++.+++|++|+++++.......+...+..
T Consensus 108 ~~~~~~~~~~~~L~~L~L~~~~l~--~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~------------------- 166 (336)
T 2ast_B 108 STLHGILSQCSKLQNLSLEGLRLS--DPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSS------------------- 166 (336)
T ss_dssp HHHHHHHTTBCCCSEEECTTCBCC--HHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHH-------------------
T ss_pred HHHHHHHhhCCCCCEEeCcCcccC--HHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhc-------------------
Confidence 5 7777888999999999988643 12223344455555555555532222222223444
Q ss_pred ccCcCCCCCCEEECCCC-CCCCCCcchhccCCC-CCcEEEccCCc--CC-CCCCccCCCCCCCcEEeCCCCc-CCccccc
Q 047929 190 LASANFSSLNALDLSGN-LFGKTSIPSWVFGLS-DLVFLDLSSNI--FR-GPIPDGFKNLTSLRYLDLSYNQ-FNSTISD 263 (790)
Q Consensus 190 ~~l~~l~~L~~L~L~~~-~l~~~~lp~~l~~l~-~L~~L~l~~~~--~~-~~~p~~~~~l~~L~~L~l~~~~-~~~~~~~ 263 (790)
+++|++|++++| .+++..++..+..++ +|++|++++|. +. ..+|..+..+++|++|++++|. +++..+.
T Consensus 167 -----~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~ 241 (336)
T 2ast_B 167 -----CSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQ 241 (336)
T ss_dssp -----CTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGG
T ss_pred -----CCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHH
Confidence 445555555555 443222344444455 55555555552 22 1233334455555555555555 4444444
Q ss_pred cccCCCCCCEEEccCcc-cccccCcccccCCCCCCEEEccCCCCCCCcchhhhhhhccccCCCCEEEccCCccccccchh
Q 047929 264 CFSNFDDLEYLSLGYNR-LQGTISSIGLENLTFIKTLDLSFNELGQDISEILDIISACAAFELESLFLRGCKISGQLTNQ 342 (790)
Q Consensus 264 ~l~~l~~L~~L~l~~~~-l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 342 (790)
.+..+++|++|++++|. +..... ..+..+++|+.|++++| +...... .+. ..++.|++++|.+++..|..
T Consensus 242 ~l~~l~~L~~L~l~~~~~~~~~~~-~~l~~~~~L~~L~l~~~-i~~~~~~-----~l~--~~l~~L~l~~n~l~~~~~~~ 312 (336)
T 2ast_B 242 EFFQLNYLQHLSLSRCYDIIPETL-LELGEIPTLKTLQVFGI-VPDGTLQ-----LLK--EALPHLQINCSHFTTIARPT 312 (336)
T ss_dssp GGGGCTTCCEEECTTCTTCCGGGG-GGGGGCTTCCEEECTTS-SCTTCHH-----HHH--HHSTTSEESCCCSCCTTCSS
T ss_pred HHhCCCCCCEeeCCCCCCCCHHHH-HHHhcCCCCCEEeccCc-cCHHHHH-----HHH--hhCcceEEecccCccccCCc
Confidence 55555566666665553 111111 12455666666666666 2221111 111 12445556777777666655
Q ss_pred hc
Q 047929 343 LG 344 (790)
Q Consensus 343 l~ 344 (790)
++
T Consensus 313 ~~ 314 (336)
T 2ast_B 313 IG 314 (336)
T ss_dssp CS
T ss_pred cc
Confidence 44
No 82
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.83 E-value=3.4e-20 Score=184.78 Aligned_cols=214 Identities=19% Similarity=0.252 Sum_probs=131.2
Q ss_pred CCCcEEEccCCcccccCCcCCCCCCCCCEEEccCCcccccCCccccCCCCCcEEECcCCcccccCchhhhhcCCCCcEEE
Q 047929 481 PDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILN 560 (790)
Q Consensus 481 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ 560 (790)
...+.++++++.++ .+|..+. ++++.|++++|.+.+..+..|..+++|++|++++|.+.+..+..+ ..+++|++|+
T Consensus 14 ~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~ 89 (251)
T 3m19_A 14 EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVF-DDLTELGTLG 89 (251)
T ss_dssp GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTT-TTCTTCCEEE
T ss_pred CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHh-ccCCcCCEEE
Confidence 34567777777776 4554443 567777777777776666666666666666666665553222222 2444555555
Q ss_pred cCCCcccccCCccccCCCCCcEEEccCCcccccCCcchhccccccccCCccccceeecccccccceeeeeeeeeccchhh
Q 047929 561 LRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVE 640 (790)
Q Consensus 561 L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 640 (790)
+++|++++..+..+..+++|+
T Consensus 90 L~~n~l~~~~~~~~~~l~~L~----------------------------------------------------------- 110 (251)
T 3m19_A 90 LANNQLASLPLGVFDHLTQLD----------------------------------------------------------- 110 (251)
T ss_dssp CTTSCCCCCCTTTTTTCTTCC-----------------------------------------------------------
T ss_pred CCCCcccccChhHhcccCCCC-----------------------------------------------------------
Confidence 555554444333344444444
Q ss_pred hhhcccceeEEEccCccCCCCCCcccccCCCCCEEeCCCCcCCcCCCccccCCCCCCEEeCcCccCccccCccccCCCCC
Q 047929 641 YNSILNLVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLSFL 720 (790)
Q Consensus 641 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L 720 (790)
+|+|++|.+.+..+..+..+++|++|++++|.+++..+..|..+++|++|++++|++.+..+..+..+++|
T Consensus 111 ---------~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 181 (251)
T 3m19_A 111 ---------KLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKL 181 (251)
T ss_dssp ---------EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred ---------EEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCC
Confidence 55555555554444556778888888888888886666678888899999999999987777788888999
Q ss_pred CEEECcCCcccccCCCCCcC------CccCCccccCCcccCCCCC-CCCcccc
Q 047929 721 NHLNLSDNKLVGKIPSSTQL------QSFGASSITGNDLCGAPLS-NCTEKNV 766 (790)
Q Consensus 721 ~~L~l~~n~l~~~~p~~~~~------~sl~~l~~~~n~l~~~~~~-~c~~~~~ 766 (790)
+.|++++|++.+..+....+ ...+.....++.+++.|.. .|..++.
T Consensus 182 ~~L~l~~N~~~c~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~ 234 (251)
T 3m19_A 182 QTITLFGNQFDCSRCEILYLSQWIRENSNKVKDGTGQNLHESPDGVTCSDGKV 234 (251)
T ss_dssp CEEECCSCCBCTTSTTHHHHHHHHHHSGGGBCC-------CCGGGCBBTTSCB
T ss_pred CEEEeeCCceeCCccccHHHHHHHHhcccceeeccCcccccCCCcCccCCCcE
Confidence 99999999987764332211 1122334456667776666 6876643
No 83
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.83 E-value=3.5e-20 Score=183.41 Aligned_cols=199 Identities=16% Similarity=0.204 Sum_probs=125.3
Q ss_pred CCCEEEccCCcccccCCccccCCCCCcEEECcCCc-ccccCchhhhhcCCCCcEEEcCC-CcccccCCccccCCCCCcEE
Q 047929 506 SLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENE-FVGNIPTWMGERFSRLRILNLRS-NKLHGIFPIQICHLSSLQIL 583 (790)
Q Consensus 506 ~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~-~~~~~~~~~~~~~~~L~~L~L~~-n~~~~~~~~~~~~l~~L~~L 583 (790)
+|++|++++|+++++.+..|..+++|++|++++|. +. .++...+..+++|++|++++ |++++..+..|..+++|++|
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~-~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQ-QLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCC-EECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcc-eeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 55555555555555555455555555555555554 33 33333333556666666665 66665555666677777777
Q ss_pred EccCCcccccCCcchhccccccccCCccccceeecccccccceeeeeeeeeccchhhhhhcccceeEEEccCc-cCCCCC
Q 047929 584 DVAYNRLSGSVPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMN-NFSGEI 662 (790)
Q Consensus 584 ~ls~n~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~ 662 (790)
++++|.+++ +|. +..+++|+ .|+.|++++| .+.+..
T Consensus 111 ~l~~n~l~~-lp~-~~~l~~L~-----------------------------------------~L~~L~l~~N~~l~~i~ 147 (239)
T 2xwt_C 111 GIFNTGLKM-FPD-LTKVYSTD-----------------------------------------IFFILEITDNPYMTSIP 147 (239)
T ss_dssp EEEEECCCS-CCC-CTTCCBCC-----------------------------------------SEEEEEEESCTTCCEEC
T ss_pred eCCCCCCcc-ccc-cccccccc-----------------------------------------cccEEECCCCcchhhcC
Confidence 777777664 443 33333321 1346777777 776555
Q ss_pred CcccccCCCCC-EEeCCCCcCCcCCCccccCCCCCCEEeCcCcc-CccccCccccCC-CCCCEEECcCCcccccCCCCCc
Q 047929 663 PMEVTNLKGLQ-SLNLSHNSFIGKIPETIGNMRSIESLDLSGNQ-ISGKIPQSMSSL-SFLNHLNLSDNKLVGKIPSSTQ 739 (790)
Q Consensus 663 ~~~~~~l~~L~-~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~-l~~~~p~~l~~l-~~L~~L~l~~n~l~~~~p~~~~ 739 (790)
+..|..+++|+ +|++++|.++...+..|.. ++|++|++++|+ +....+..|..+ ++|+.|++++|++.+ +|.. .
T Consensus 148 ~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~-~ 224 (239)
T 2xwt_C 148 VNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK-G 224 (239)
T ss_dssp TTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT-T
T ss_pred cccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh-H
Confidence 55677788888 8888888877444444554 778888888884 776666777777 888888888888764 4444 5
Q ss_pred CCccCCccccCC
Q 047929 740 LQSFGASSITGN 751 (790)
Q Consensus 740 ~~sl~~l~~~~n 751 (790)
+.+|+.|.+.++
T Consensus 225 ~~~L~~L~l~~~ 236 (239)
T 2xwt_C 225 LEHLKELIARNT 236 (239)
T ss_dssp CTTCSEEECTTC
T ss_pred hccCceeeccCc
Confidence 667777777764
No 84
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.83 E-value=1.6e-19 Score=179.92 Aligned_cols=191 Identities=21% Similarity=0.287 Sum_probs=118.2
Q ss_pred CCCcccCceeecCCCCcEEEEEcCCCCCCccccccCcCCCCCCEEeCCCCCCCCCCcCccccCCCCCCEEeCCCCccccc
Q 047929 32 VDCCEWGGVVCNNITGHVLELNLERSELGGKINPALVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGW 111 (790)
Q Consensus 32 ~~~~~~~~~~c~~~~~~v~~L~L~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~ 111 (790)
++|+.|.|..|. ...++++++++.++ .+|..+. ++++.|+|++|.+.+. .+..+.++++|++|++++|.+.+.
T Consensus 2 ~~Cp~~~gC~C~---~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~ 74 (251)
T 3m19_A 2 KTCETVTGCTCN---EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATL-SDATFRGLTKLTWLNLDYNQLQTL 74 (251)
T ss_dssp --CHHHHSSEEE---GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECTTSCCCCC
T ss_pred ccCCCCCceEcC---CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCcc-CHhHhcCcccCCEEECCCCcCCcc
Confidence 357789999994 24557888888887 5565554 5889999999988866 566788889999999999988887
Q ss_pred CCCCCCCCCCCcEEECcCCcccccccCccccCCCCCCcEEECCCCCCCCCchhHHhhCCCCCCCEEEccCccccccCccc
Q 047929 112 IPHQLGNLSNLMHLDLSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLA 191 (790)
Q Consensus 112 lp~~l~~l~~L~~L~ls~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 191 (790)
.+..+..+++|++|++++|.+...+.. .+..+++|++|++++|.+..+++..
T Consensus 75 ~~~~~~~l~~L~~L~L~~n~l~~~~~~----------------------------~~~~l~~L~~L~L~~N~l~~~~~~~ 126 (251)
T 3m19_A 75 SAGVFDDLTELGTLGLANNQLASLPLG----------------------------VFDHLTQLDKLYLGGNQLKSLPSGV 126 (251)
T ss_dssp CTTTTTTCTTCCEEECTTSCCCCCCTT----------------------------TTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred CHhHhccCCcCCEEECCCCcccccChh----------------------------HhcccCCCCEEEcCCCcCCCcChhH
Confidence 777788888888888887754322110 2334444444444444444444444
Q ss_pred CcCCCCCCEEECCCCCCCCCCcchhccCCCCCcEEEccCCcCCCCCCccCCCCCCCcEEeCCCCcCCccccccccCCCCC
Q 047929 192 SANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDL 271 (790)
Q Consensus 192 l~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L 271 (790)
+..+++|++| ++++|.+.+..+..|..+++|++|++++|++.+..+..+..+++|
T Consensus 127 ~~~l~~L~~L-------------------------~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 181 (251)
T 3m19_A 127 FDRLTKLKEL-------------------------RLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKL 181 (251)
T ss_dssp TTTCTTCCEE-------------------------ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred hccCCcccEE-------------------------ECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCC
Confidence 4444444444 444444443333344555555555555555554444445555555
Q ss_pred CEEEccCcccc
Q 047929 272 EYLSLGYNRLQ 282 (790)
Q Consensus 272 ~~L~l~~~~l~ 282 (790)
+.|++++|++.
T Consensus 182 ~~L~l~~N~~~ 192 (251)
T 3m19_A 182 QTITLFGNQFD 192 (251)
T ss_dssp CEEECCSCCBC
T ss_pred CEEEeeCCcee
Confidence 55555555544
No 85
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.83 E-value=5.3e-22 Score=211.93 Aligned_cols=248 Identities=14% Similarity=0.191 Sum_probs=186.1
Q ss_pred CCCcccccCCCCCEEEccCCccCCCcccccccccccccCCCccCCCCCCcEEEccCCcc---cccCCcCC-------CCC
Q 047929 435 HFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKF---TGSIPISM-------GTL 504 (790)
Q Consensus 435 ~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~---~~~~~~~~-------~~l 504 (790)
.++..+..+++|++|++++|.+....+. .++..+..+++|++|++++|.+ .+.+|..+ ..+
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~---------~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~ 93 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAAR---------WLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKC 93 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHH---------HHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTC
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHH---------HHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhC
Confidence 3455677788899999999987754332 1233456788999999998644 33444333 678
Q ss_pred CCCCEEEccCCcccc----cCCccccCCCCCcEEECcCCcccccCchhhhhc---C---------CCCcEEEcCCCccc-
Q 047929 505 TSLRSLNLRSNRLSG----IIPVPFENCSQLVALDMGENEFVGNIPTWMGER---F---------SRLRILNLRSNKLH- 567 (790)
Q Consensus 505 ~~L~~L~L~~n~i~~----~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~---~---------~~L~~L~L~~n~~~- 567 (790)
++|++|++++|.++. ..+..+..+++|++|++++|.+.+..+..+... + ++|++|++++|+++
T Consensus 94 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~ 173 (386)
T 2ca6_A 94 PKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLEN 173 (386)
T ss_dssp TTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTG
T ss_pred CcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCc
Confidence 999999999999887 345577888999999999998875444444322 2 89999999999987
Q ss_pred ccCC---ccccCCCCCcEEEccCCccccc-----CCcchhccccccccCCccccceeecccccccceeeeeeeeeccchh
Q 047929 568 GIFP---IQICHLSSLQILDVAYNRLSGS-----VPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMV 639 (790)
Q Consensus 568 ~~~~---~~~~~l~~L~~L~ls~n~l~~~-----~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 639 (790)
...+ ..+..+++|+.|++++|.+... .|..+.
T Consensus 174 ~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~---------------------------------------- 213 (386)
T 2ca6_A 174 GSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLA---------------------------------------- 213 (386)
T ss_dssp GGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGG----------------------------------------
T ss_pred HHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhh----------------------------------------
Confidence 2333 3566788999999999987621 111222
Q ss_pred hhhhcccceeEEEccCccCC----CCCCcccccCCCCCEEeCCCCcCCcC----CCccccC--CCCCCEEeCcCccCcc-
Q 047929 640 EYNSILNLVRSIDISMNNFS----GEIPMEVTNLKGLQSLNLSHNSFIGK----IPETIGN--MRSIESLDLSGNQISG- 708 (790)
Q Consensus 640 ~~~~~~~~L~~L~L~~n~l~----~~~~~~~~~l~~L~~L~L~~n~l~~~----~p~~l~~--l~~L~~L~l~~n~l~~- 708 (790)
.++.|+.|+|++|.++ ..+|..+..+++|++|+|++|.+++. ++.++.. +++|++|++++|.+..
T Consensus 214 ----~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~ 289 (386)
T 2ca6_A 214 ----YCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELD 289 (386)
T ss_dssp ----GCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHH
T ss_pred ----cCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHH
Confidence 2445678999999985 56778888999999999999999865 4566643 8999999999999997
Q ss_pred ---ccCccc-cCCCCCCEEECcCCcccccCC
Q 047929 709 ---KIPQSM-SSLSFLNHLNLSDNKLVGKIP 735 (790)
Q Consensus 709 ---~~p~~l-~~l~~L~~L~l~~n~l~~~~p 735 (790)
.+|..+ ..+++|++|++++|++.+..|
T Consensus 290 g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 290 AVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp HHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred HHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 477777 668999999999999987654
No 86
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.82 E-value=7.5e-21 Score=199.19 Aligned_cols=249 Identities=19% Similarity=0.231 Sum_probs=129.9
Q ss_pred ceEEEcCCCCCCCCCCcccccC--CCCCEEEccCCccCCCcccccccccccccCCCccCCCCCCcEEEccCCccccc-CC
Q 047929 422 LLALRLRSCHLGPHFPSWLHSQ--KHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGS-IP 498 (790)
Q Consensus 422 L~~L~l~~~~~~~~~~~~~~~~--~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~-~~ 498 (790)
++.++++++.+. +..+..+ ++++.+++++|.+.+..+ .+..+++|++|++++|.+++. ++
T Consensus 49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~--------------~~~~~~~L~~L~L~~~~l~~~~~~ 111 (336)
T 2ast_B 49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLA--------------EHFSPFRVQHMDLSNSVIEVSTLH 111 (336)
T ss_dssp SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCC--------------SCCCCBCCCEEECTTCEECHHHHH
T ss_pred heeeccccccCC---HHHHHhhhhccceEEEcCCccccccch--------------hhccCCCCCEEEccCCCcCHHHHH
Confidence 445555555443 2334444 566677776666544322 123456667777776666543 44
Q ss_pred cCCCCCCCCCEEEccCCcccccCCccccCCCCCcEEECcCC-ccccc-CchhhhhcCCCCcEEEcCCC-ccccc-CCccc
Q 047929 499 ISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGEN-EFVGN-IPTWMGERFSRLRILNLRSN-KLHGI-FPIQI 574 (790)
Q Consensus 499 ~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n-~~~~~-~~~~~~~~~~~L~~L~L~~n-~~~~~-~~~~~ 574 (790)
..+..+++|++|++++|.+++..+..+..+++|++|++++| .+.+. ++. +...+++|++|++++| .+++. .+..+
T Consensus 112 ~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 190 (336)
T 2ast_B 112 GILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQT-LLSSCSRLDELNLSWCFDFTEKHVQVAV 190 (336)
T ss_dssp HHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHH-HHHHCTTCCEEECCCCTTCCHHHHHHHH
T ss_pred HHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHH-HHhcCCCCCEEcCCCCCCcChHHHHHHH
Confidence 45566666777777666666555555666666666666666 34432 222 2235666666666666 66542 34445
Q ss_pred cCCC-CCcEEEccCCc--cc-ccCCcchhccccccccCCccccceeecccccccceeeeeeeeeccchhhhhhcccceeE
Q 047929 575 CHLS-SLQILDVAYNR--LS-GSVPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRS 650 (790)
Q Consensus 575 ~~l~-~L~~L~ls~n~--l~-~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 650 (790)
..++ +|++|++++|. ++ +.+|..+.+ ++.|++
T Consensus 191 ~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~--------------------------------------------~~~L~~ 226 (336)
T 2ast_B 191 AHVSETITQLNLSGYRKNLQKSDLSTLVRR--------------------------------------------CPNLVH 226 (336)
T ss_dssp HHSCTTCCEEECCSCGGGSCHHHHHHHHHH--------------------------------------------CTTCSE
T ss_pred HhcccCCCEEEeCCCcccCCHHHHHHHHhh--------------------------------------------CCCCCE
Confidence 5566 66666666663 22 112222111 223445
Q ss_pred EEccCcc-CCCCCCcccccCCCCCEEeCCCCc-CCcCCCccccCCCCCCEEeCcCccCccccCccccCCC-CCCEEECcC
Q 047929 651 IDISMNN-FSGEIPMEVTNLKGLQSLNLSHNS-FIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLS-FLNHLNLSD 727 (790)
Q Consensus 651 L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~-~L~~L~l~~ 727 (790)
|++++|. +++..+..+..+++|++|++++|. ++......+..+++|+.|++++| +. .+.+..+. +++.|++++
T Consensus 227 L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~---~~~~~~l~~~l~~L~l~~ 302 (336)
T 2ast_B 227 LDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VP---DGTLQLLKEALPHLQINC 302 (336)
T ss_dssp EECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SC---TTCHHHHHHHSTTSEESC
T ss_pred EeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cC---HHHHHHHHhhCcceEEec
Confidence 6666665 444444455555666666666653 21111123455556666666655 22 12233332 245555555
Q ss_pred CcccccCCC
Q 047929 728 NKLVGKIPS 736 (790)
Q Consensus 728 n~l~~~~p~ 736 (790)
|++.+..|.
T Consensus 303 n~l~~~~~~ 311 (336)
T 2ast_B 303 SHFTTIARP 311 (336)
T ss_dssp CCSCCTTCS
T ss_pred ccCccccCC
Confidence 555555544
No 87
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.82 E-value=3.1e-21 Score=203.71 Aligned_cols=260 Identities=17% Similarity=0.184 Sum_probs=180.3
Q ss_pred EEcCCCCCCCCCCcccccCCCCCEEEccCCccCCCcccccccccccccCCCccCCCC-CCcEEEccCCcccccCCcCCCC
Q 047929 425 LRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWP-DLRVLNLGNNKFTGSIPISMGT 503 (790)
Q Consensus 425 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~ 503 (790)
+.++.+.+.+..|..+...++|++|++++|.+.+..+..+ ...+..++ +|++|++++|.+++..+..+..
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l---------~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~ 73 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVEL---------IQAFANTPASVTSLNLSGNSLGFKNSDELVQ 73 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHH---------HHHHHTCCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHH---------HHHHHhCCCceeEEECcCCCCCHHHHHHHHH
Confidence 4566677777777766666778889998888876544211 12345666 7889999998888665555544
Q ss_pred C-----CCCCEEEccCCcccccCCcc----ccCC-CCCcEEECcCCcccccCchhhhhc----CCCCcEEEcCCCccccc
Q 047929 504 L-----TSLRSLNLRSNRLSGIIPVP----FENC-SQLVALDMGENEFVGNIPTWMGER----FSRLRILNLRSNKLHGI 569 (790)
Q Consensus 504 l-----~~L~~L~L~~n~i~~~~~~~----l~~l-~~L~~L~l~~n~~~~~~~~~~~~~----~~~L~~L~L~~n~~~~~ 569 (790)
+ ++|++|++++|.+++..+.. +..+ ++|++|++++|.+.+..+..+... .++|++|++++|++++.
T Consensus 74 ~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~ 153 (362)
T 3goz_A 74 ILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIK 153 (362)
T ss_dssp HHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGS
T ss_pred HHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHH
Confidence 3 88999999999888766553 3344 789999999998876655554332 35899999999988743
Q ss_pred C----CccccCCC-CCcEEEccCCcccccCCcchhccccccccCCccccceeecccccccceeeeeeeeeccchhhhhhc
Q 047929 570 F----PIQICHLS-SLQILDVAYNRLSGSVPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSI 644 (790)
Q Consensus 570 ~----~~~~~~l~-~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 644 (790)
. +..+..++ +|++|++++|.+++..+..+... ...
T Consensus 154 ~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~----------------------------------------l~~ 193 (362)
T 3goz_A 154 SSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKF----------------------------------------LAS 193 (362)
T ss_dssp CHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHH----------------------------------------HHT
T ss_pred HHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHH----------------------------------------HHh
Confidence 3 23344555 89999999998876555433321 011
Q ss_pred c-cceeEEEccCccCCCC----CCccccc-CCCCCEEeCCCCcCCcCCC----ccccCCCCCCEEeCcCccCccc-----
Q 047929 645 L-NLVRSIDISMNNFSGE----IPMEVTN-LKGLQSLNLSHNSFIGKIP----ETIGNMRSIESLDLSGNQISGK----- 709 (790)
Q Consensus 645 ~-~~L~~L~L~~n~l~~~----~~~~~~~-l~~L~~L~L~~n~l~~~~p----~~l~~l~~L~~L~l~~n~l~~~----- 709 (790)
. +.|++|||++|.+.+. ++..+.. .++|++|++++|.+++..+ ..+..+++|++|++++|.+...
T Consensus 194 ~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~ 273 (362)
T 3goz_A 194 IPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQC 273 (362)
T ss_dssp SCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHH
T ss_pred CCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHH
Confidence 2 3567899999988752 3444544 3589999999998886544 3456678899999999984432
Q ss_pred --cCccccCCCCCCEEECcCCccccc
Q 047929 710 --IPQSMSSLSFLNHLNLSDNKLVGK 733 (790)
Q Consensus 710 --~p~~l~~l~~L~~L~l~~n~l~~~ 733 (790)
++..+..+++|+.|++++|++...
T Consensus 274 ~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 274 KALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp HHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred HHHHHHhccCCceEEEecCCCcCCCc
Confidence 345677788899999999988765
No 88
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.82 E-value=1.2e-19 Score=179.58 Aligned_cols=197 Identities=16% Similarity=0.231 Sum_probs=128.6
Q ss_pred CCcEEEccCCcccccCCcCCCCCCCCCEEEccCCc-ccccCCccccCCCCCcEEECcC-CcccccCchhhhhcCCCCcEE
Q 047929 482 DLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNR-LSGIIPVPFENCSQLVALDMGE-NEFVGNIPTWMGERFSRLRIL 559 (790)
Q Consensus 482 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~l~~l~~L~~L~l~~-n~~~~~~~~~~~~~~~~L~~L 559 (790)
+++.|++++|.+++..+..|..+++|++|++++|+ ++.+.+..|..+++|++|++++ |.+. .++...+..+++|++|
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~-~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT-YIDPDALKELPLLKFL 110 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCC-EECTTSEECCTTCCEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCee-EcCHHHhCCCCCCCEE
Confidence 56677777777765555566667777777777775 6666666667777777777776 6665 3333333456777777
Q ss_pred EcCCCcccccCCccccCCCCCc---EEEccCC-cccccCCcchhccccccccCCccccceeecccccccceeeeeeeeec
Q 047929 560 NLRSNKLHGIFPIQICHLSSLQ---ILDVAYN-RLSGSVPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMK 635 (790)
Q Consensus 560 ~L~~n~~~~~~~~~~~~l~~L~---~L~ls~n-~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 635 (790)
++++|++++ +|. +..+++|+ .|++++| .+.+..+..+.+++
T Consensus 111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~--------------------------------- 155 (239)
T 2xwt_C 111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLC--------------------------------- 155 (239)
T ss_dssp EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTB---------------------------------
T ss_pred eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchh---------------------------------
Confidence 777777765 343 66666666 7777777 66544443344333
Q ss_pred cchhhhhhccccee-EEEccCccCCCCCCcccccCCCCCEEeCCCCc-CCcCCCccccCC-CCCCEEeCcCccCccccCc
Q 047929 636 GFMVEYNSILNLVR-SIDISMNNFSGEIPMEVTNLKGLQSLNLSHNS-FIGKIPETIGNM-RSIESLDLSGNQISGKIPQ 712 (790)
Q Consensus 636 ~~~~~~~~~~~~L~-~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~p~~l~~l-~~L~~L~l~~n~l~~~~p~ 712 (790)
.|+ .|++++|++. .+|......++|++|++++|+ +++..+..|.++ ++|+.|++++|++.. +|.
T Consensus 156 -----------~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~ 222 (239)
T 2xwt_C 156 -----------NETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPS 222 (239)
T ss_dssp -----------SSEEEEECCSCCCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCC
T ss_pred -----------cceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc-CCh
Confidence 345 6777777776 444433233778888888884 776666778888 888888888888874 443
Q ss_pred cccCCCCCCEEECcCCc
Q 047929 713 SMSSLSFLNHLNLSDNK 729 (790)
Q Consensus 713 ~l~~l~~L~~L~l~~n~ 729 (790)
. .+++|+.|+++++.
T Consensus 223 ~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 223 K--GLEHLKELIARNTW 237 (239)
T ss_dssp T--TCTTCSEEECTTC-
T ss_pred h--HhccCceeeccCcc
Confidence 3 56788888888764
No 89
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.80 E-value=5.7e-19 Score=181.39 Aligned_cols=194 Identities=22% Similarity=0.301 Sum_probs=102.6
Q ss_pred CcCCCCCCEEeCCCCCCCCCCcCccccCCCCCCEEeCCCCcccccCCCCCCCCCCCcEEECcCCcccccccCccccCCCC
Q 047929 67 LVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHLDLSGSYYELRVEDISWLAGPS 146 (790)
Q Consensus 67 l~~l~~L~~L~Ls~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~ls~~~~~~~~~~~~~l~~l~ 146 (790)
..++++|++|+++++.+.. ++ .+..+++|++|++++|.+.+ ++. +..+++|++|++++|.+... ..+..++
T Consensus 37 ~~~l~~L~~L~l~~~~i~~--l~-~~~~l~~L~~L~L~~n~i~~-~~~-~~~l~~L~~L~L~~n~l~~~----~~~~~l~ 107 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTT--IE-GVQYLNNLIGLELKDNQITD-LAP-LKNLTKITELELSGNPLKNV----SAIAGLQ 107 (308)
T ss_dssp HHHHHTCCEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCCSCCEEECCSCCCSCC----GGGTTCT
T ss_pred HHHcCCcCEEEeeCCCccC--ch-hhhccCCCCEEEccCCcCCC-Chh-HccCCCCCEEEccCCcCCCc----hhhcCCC
Confidence 3456677777777776663 33 46667777777777777666 333 66777777777777654322 2344444
Q ss_pred CCcEEECCCCCCCCCchhHHhhCCCCCCCEEEccCccccccCcccCcCCCCCCEEECCCCCCCCCCcchhccCCCCCcEE
Q 047929 147 LLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFL 226 (790)
Q Consensus 147 ~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L 226 (790)
+|++|+++++.+...+ .+..+++|++|++++|.+..+.+ +..+++|++|++++|.+.+ ++. +..+++|++|
T Consensus 108 ~L~~L~l~~n~l~~~~----~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~--~~~-l~~l~~L~~L 178 (308)
T 1h6u_A 108 SIKTLDLTSTQITDVT----PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSD--LTP-LANLSKLTTL 178 (308)
T ss_dssp TCCEEECTTSCCCCCG----GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC--CGG-GTTCTTCCEE
T ss_pred CCCEEECCCCCCCCch----hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCC--Chh-hcCCCCCCEE
Confidence 4444444444444332 24455555555555555544433 4455555555555555432 232 4455555555
Q ss_pred EccCCcCCCCCCccCCCCCCCcEEeCCCCcCCccccccccCCCCCCEEEccCcccc
Q 047929 227 DLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQ 282 (790)
Q Consensus 227 ~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~ 282 (790)
++++|.+.+. +. +..+++|++|++++|++.+.. .+..+++|+.|++++|+++
T Consensus 179 ~l~~n~l~~~-~~-l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 179 KADDNKISDI-SP-LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp ECCSSCCCCC-GG-GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEE
T ss_pred ECCCCccCcC-hh-hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeee
Confidence 5555555432 21 445555555555555554432 2444555555555555443
No 90
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.80 E-value=4.8e-19 Score=181.95 Aligned_cols=191 Identities=20% Similarity=0.367 Sum_probs=108.8
Q ss_pred CCCcEEEccCCcccccCCcCCCCCCCCCEEEccCCcccccCCccccCCCCCcEEECcCCcccccCchhhhhcCCCCcEEE
Q 047929 481 PDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILN 560 (790)
Q Consensus 481 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ 560 (790)
++|+.|++++|.+.. ++ .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+ ++ .+ ..+++|++|+
T Consensus 41 ~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~-~~-~~-~~l~~L~~L~ 113 (308)
T 1h6u_A 41 DGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN-VS-AI-AGLQSIKTLD 113 (308)
T ss_dssp HTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC-CG-GG-TTCTTCCEEE
T ss_pred CCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCC-ch-hh-cCCCCCCEEE
Confidence 344444444444442 22 24444555555555555544332 4555555555555555442 22 12 2455666666
Q ss_pred cCCCcccccCCccccCCCCCcEEEccCCcccccCCcchhccccccccCCccccceeecccccccceeeeeeeeeccchhh
Q 047929 561 LRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVE 640 (790)
Q Consensus 561 L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 640 (790)
+++|++++.. .+..+++|+.|++++|.+.+..+ +..
T Consensus 114 l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--l~~---------------------------------------- 149 (308)
T 1h6u_A 114 LTSTQITDVT--PLAGLSNLQVLYLDLNQITNISP--LAG---------------------------------------- 149 (308)
T ss_dssp CTTSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG--GGG----------------------------------------
T ss_pred CCCCCCCCch--hhcCCCCCCEEECCCCccCcCcc--ccC----------------------------------------
Confidence 6666665432 25566666666666666553221 222
Q ss_pred hhhcccceeEEEccCccCCCCCCcccccCCCCCEEeCCCCcCCcCCCccccCCCCCCEEeCcCccCccccCccccCCCCC
Q 047929 641 YNSILNLVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLSFL 720 (790)
Q Consensus 641 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L 720 (790)
++.|+.|++++|.+.+ ++. +..+++|++|++++|.+++..+ +..+++|++|++++|++.+.. .+..+++|
T Consensus 150 ----l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L 219 (308)
T 1h6u_A 150 ----LTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNL 219 (308)
T ss_dssp ----CTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTC
T ss_pred ----CCCccEEEccCCcCCC-Chh-hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCC
Confidence 2234566677776664 232 6677777777777777764332 677777888888888777544 26777778
Q ss_pred CEEECcCCcccc
Q 047929 721 NHLNLSDNKLVG 732 (790)
Q Consensus 721 ~~L~l~~n~l~~ 732 (790)
+.|++++|++.+
T Consensus 220 ~~L~l~~N~i~~ 231 (308)
T 1h6u_A 220 FIVTLTNQTITN 231 (308)
T ss_dssp CEEEEEEEEEEC
T ss_pred CEEEccCCeeec
Confidence 888888887764
No 91
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.80 E-value=1.7e-19 Score=185.92 Aligned_cols=204 Identities=22% Similarity=0.246 Sum_probs=109.4
Q ss_pred CCCcEEEccCCcccccCCcCC--CCCCCCCEEEccCCcccccCC----ccccCCCCCcEEECcCCcccccCchhhhhcCC
Q 047929 481 PDLRVLNLGNNKFTGSIPISM--GTLTSLRSLNLRSNRLSGIIP----VPFENCSQLVALDMGENEFVGNIPTWMGERFS 554 (790)
Q Consensus 481 ~~L~~L~l~~n~~~~~~~~~~--~~l~~L~~L~L~~n~i~~~~~----~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~ 554 (790)
++|++|++++|.+.+..|..+ ..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..+..+ ..++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~-~~l~ 169 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQV-RAFP 169 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSC-CCCT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHh-ccCC
Confidence 457777777777776666665 666777777777777665333 223345666666666666653333333 3556
Q ss_pred CCcEEEcCCCccccc---C-CccccCCCCCcEEEccCCcccccCCcchhccccccccCCccccceeecccccccceeeee
Q 047929 555 RLRILNLRSNKLHGI---F-PIQICHLSSLQILDVAYNRLSGSVPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEI 630 (790)
Q Consensus 555 ~L~~L~L~~n~~~~~---~-~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~ 630 (790)
+|++|++++|++.+. . +..+..+++|++|++++|.++. ++.....
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~------------------------------ 218 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAA------------------------------ 218 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHH------------------------------
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHH------------------------------
Confidence 666666666665431 1 1223455666666666665541 1110000
Q ss_pred eeeeccchhhhhhcccceeEEEccCccCCCCCCcccccC---CCCCEEeCCCCcCCcCCCccccCCCCCCEEeCcCccCc
Q 047929 631 SLVMKGFMVEYNSILNLVRSIDISMNNFSGEIPMEVTNL---KGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQIS 707 (790)
Q Consensus 631 ~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l---~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~ 707 (790)
....++.|++|||++|.+.+..|..+..+ ++|++|++++|.++ .+|..+. ++|++|++++|+++
T Consensus 219 ----------l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~ 285 (310)
T 4glp_A 219 ----------LAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLN 285 (310)
T ss_dssp ----------HHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCC
T ss_pred ----------HHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCC
Confidence 00112334556666666665545544444 46666666666665 4454443 56666666666665
Q ss_pred cccCccccCCCCCCEEECcCCccc
Q 047929 708 GKIPQSMSSLSFLNHLNLSDNKLV 731 (790)
Q Consensus 708 ~~~p~~l~~l~~L~~L~l~~n~l~ 731 (790)
+. |. +..+++|+.|++++|++.
T Consensus 286 ~~-~~-~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 286 RA-PQ-PDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp SC-CC-TTSCCCCSCEECSSTTTS
T ss_pred CC-ch-hhhCCCccEEECcCCCCC
Confidence 32 22 455566666666666554
No 92
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.80 E-value=1.9e-19 Score=185.57 Aligned_cols=226 Identities=21% Similarity=0.206 Sum_probs=159.6
Q ss_pred cEEEEEcCCCCCCcccc---ccCcCCCCCCEEeCCCCCCCCCCcCccc--cCCCCCCEEeCCCCcccccCC----CCCCC
Q 047929 48 HVLELNLERSELGGKIN---PALVDLKHLNLLDLSGNDFQGIQIPEYI--GSMDNLRYLNLSGAGFAGWIP----HQLGN 118 (790)
Q Consensus 48 ~v~~L~L~~~~~~~~~~---~~l~~l~~L~~L~Ls~~~~~~~~l~~~~--~~l~~L~~L~Ls~~~~~~~lp----~~l~~ 118 (790)
+++.+.+.++.+..... ..+..+++|++|++++|.+.+. .|..+ ..+++|++|++++|.+.+..+ ..+..
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGT-MPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSC-CCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccc-hhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 56777777776643211 1122346688888888887765 56666 778888888888888776444 33456
Q ss_pred CCCCcEEECcCCcccccccCccccCCCCCCcEEECCCCCCCCCchhH--HhhCCCCCCCEEEccCccccccCcc---cCc
Q 047929 119 LSNLMHLDLSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWL--LVINSLPSLKVLKLFSCKLHHFAPL---ASA 193 (790)
Q Consensus 119 l~~L~~L~ls~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~l~~l~~L~~L~l~~~~~~~~~~~---~l~ 193 (790)
+++|++|++++|.+... ....++++++|++|++++|.+.+..... ..+..+++|++|++++|.++.++.. .+.
T Consensus 144 ~~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~ 221 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAF--SCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAA 221 (310)
T ss_dssp CSCCCEEEEECCSSCCC--CTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHH
T ss_pred ccCCCEEEeeCCCcchh--hHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHh
Confidence 88888888888875332 2245667888888888888765432221 1236788888888888888654332 356
Q ss_pred CCCCCCEEECCCCCCCCCCcchhccCC---CCCcEEEccCCcCCCCCCccCCCCCCCcEEeCCCCcCCccccccccCCCC
Q 047929 194 NFSSLNALDLSGNLFGKTSIPSWVFGL---SDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDD 270 (790)
Q Consensus 194 ~l~~L~~L~L~~~~l~~~~lp~~l~~l---~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~ 270 (790)
.+++|++|++++|.+.+ ..|..+..+ ++|++|++++|+++ .+|..+. ++|++|++++|++++. |. +..+++
T Consensus 222 ~l~~L~~L~Ls~N~l~~-~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~ 295 (310)
T 4glp_A 222 AGVQPHSLDLSHNSLRA-TVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPE 295 (310)
T ss_dssp HTCCCSSEECTTSCCCC-CCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCC
T ss_pred cCCCCCEEECCCCCCCc-cchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCC
Confidence 77889999999988865 346666655 68999999999888 5676664 7899999999988865 22 677888
Q ss_pred CCEEEccCcccc
Q 047929 271 LEYLSLGYNRLQ 282 (790)
Q Consensus 271 L~~L~l~~~~l~ 282 (790)
|+.|++++|+++
T Consensus 296 L~~L~L~~N~l~ 307 (310)
T 4glp_A 296 VDNLTLDGNPFL 307 (310)
T ss_dssp CSCEECSSTTTS
T ss_pred ccEEECcCCCCC
Confidence 999999998875
No 93
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.79 E-value=1.5e-20 Score=200.76 Aligned_cols=194 Identities=18% Similarity=0.157 Sum_probs=85.9
Q ss_pred CccccCCCCCCEEeCCCCccccc----CCCCCCCCCCCcEEECcCCcccccccC----c----cccCCCCCCcEEECCCC
Q 047929 89 PEYIGSMDNLRYLNLSGAGFAGW----IPHQLGNLSNLMHLDLSGSYYELRVED----I----SWLAGPSLLEHLDTSDV 156 (790)
Q Consensus 89 ~~~~~~l~~L~~L~Ls~~~~~~~----lp~~l~~l~~L~~L~ls~~~~~~~~~~----~----~~l~~l~~L~~L~l~~~ 156 (790)
+..+..+++|++|++++|.+... ++..+.++++|++|++++|.+...... + ..+..+++|++|++++|
T Consensus 25 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n 104 (386)
T 2ca6_A 25 FAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN 104 (386)
T ss_dssp SHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC
T ss_pred HHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCC
Confidence 34444445555555555544433 222344455555555554432211100 0 11233344444444444
Q ss_pred CCCCC--chhHHhhCCCCCCCEEEccCccccccCcccCc----CC---------CCCCEEECCCCCCCCCCcc---hhcc
Q 047929 157 DLIKA--SDWLLVINSLPSLKVLKLFSCKLHHFAPLASA----NF---------SSLNALDLSGNLFGKTSIP---SWVF 218 (790)
Q Consensus 157 ~~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~----~l---------~~L~~L~L~~~~l~~~~lp---~~l~ 218 (790)
.+... ..++..+..+++|++|++++|.+.......+. .+ ++|++|++++|.+....+| ..+.
T Consensus 105 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~ 184 (386)
T 2ca6_A 105 AFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQ 184 (386)
T ss_dssp CCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHH
Confidence 43332 12333455556666666666655433322222 22 5566666666655432333 2333
Q ss_pred CCCCCcEEEccCCcCCC-----CCCccCCCCCCCcEEeCCCCcCC----ccccccccCCCCCCEEEccCcccc
Q 047929 219 GLSDLVFLDLSSNIFRG-----PIPDGFKNLTSLRYLDLSYNQFN----STISDCFSNFDDLEYLSLGYNRLQ 282 (790)
Q Consensus 219 ~l~~L~~L~l~~~~~~~-----~~p~~~~~l~~L~~L~l~~~~~~----~~~~~~l~~l~~L~~L~l~~~~l~ 282 (790)
.+++|++|++++|.+.. ..+..+..+++|++|++++|.+. ..++..+..+++|++|++++|.+.
T Consensus 185 ~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~ 257 (386)
T 2ca6_A 185 SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLS 257 (386)
T ss_dssp HCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCC
T ss_pred hCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCc
Confidence 45555555555555441 12223445555555555555543 223334444444444544444443
No 94
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.79 E-value=3.6e-20 Score=195.51 Aligned_cols=256 Identities=17% Similarity=0.145 Sum_probs=188.3
Q ss_pred EEccCCccCCCcccccccccccccCCCccCCCCCCcEEEccCCcccccCC----cCCCCCC-CCCEEEccCCcccccCCc
Q 047929 449 LDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIP----ISMGTLT-SLRSLNLRSNRLSGIIPV 523 (790)
Q Consensus 449 L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~----~~~~~l~-~L~~L~L~~n~i~~~~~~ 523 (790)
+.++.|.+.+..+ ..+...++|++|++++|.+++..+ ..+..++ +|++|++++|++++..+.
T Consensus 3 ~~ls~n~~~~~~~-------------~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~ 69 (362)
T 3goz_A 3 YKLTLHPGSNPVE-------------EFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSD 69 (362)
T ss_dssp EECCCCTTCCHHH-------------HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHH
T ss_pred cccccccchHHHH-------------HHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHH
Confidence 5677777665433 333455669999999999986655 5677788 899999999999987776
Q ss_pred cccCC-----CCCcEEECcCCcccccCchhhhhc---C-CCCcEEEcCCCcccccCCccc----cC-CCCCcEEEccCCc
Q 047929 524 PFENC-----SQLVALDMGENEFVGNIPTWMGER---F-SRLRILNLRSNKLHGIFPIQI----CH-LSSLQILDVAYNR 589 (790)
Q Consensus 524 ~l~~l-----~~L~~L~l~~n~~~~~~~~~~~~~---~-~~L~~L~L~~n~~~~~~~~~~----~~-l~~L~~L~ls~n~ 589 (790)
.+..+ ++|++|++++|.+.+..+..+... + ++|++|++++|++++..+..+ .. .++|++|++++|.
T Consensus 70 ~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~ 149 (362)
T 3goz_A 70 ELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGND 149 (362)
T ss_dssp HHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSC
T ss_pred HHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCc
Confidence 66664 999999999999987776655432 3 799999999999986655443 33 3699999999999
Q ss_pred ccccCCcchhccccccccCCccccceeecccccccceeeeeeeeeccchhhhhhcccceeEEEccCccCCCCCCcccc--
Q 047929 590 LSGSVPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGEIPMEVT-- 667 (790)
Q Consensus 590 l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~-- 667 (790)
+.+..+..+... .......|++|+|++|.+++..+..+.
T Consensus 150 l~~~~~~~l~~~---------------------------------------l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 190 (362)
T 3goz_A 150 LGIKSSDELIQI---------------------------------------LAAIPANVNSLNLRGNNLASKNCAELAKF 190 (362)
T ss_dssp GGGSCHHHHHHH---------------------------------------HHTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred CCHHHHHHHHHH---------------------------------------HhcCCccccEeeecCCCCchhhHHHHHHH
Confidence 885443332210 001123678999999999876665443
Q ss_pred --cC-CCCCEEeCCCCcCCcC----CCccccC-CCCCCEEeCcCccCccccC----ccccCCCCCCEEECcCCccccc--
Q 047929 668 --NL-KGLQSLNLSHNSFIGK----IPETIGN-MRSIESLDLSGNQISGKIP----QSMSSLSFLNHLNLSDNKLVGK-- 733 (790)
Q Consensus 668 --~l-~~L~~L~L~~n~l~~~----~p~~l~~-l~~L~~L~l~~n~l~~~~p----~~l~~l~~L~~L~l~~n~l~~~-- 733 (790)
.+ ++|++|++++|.+++. ++..+.. .++|++|++++|.+....+ ..+..+++|++|++++|++.+.
T Consensus 191 l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~ 270 (362)
T 3goz_A 191 LASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSK 270 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCH
T ss_pred HHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCH
Confidence 44 6999999999999863 3445555 3599999999999986544 3456789999999999984322
Q ss_pred -----CC-CCCcCCccCCccccCCcccCC
Q 047929 734 -----IP-SSTQLQSFGASSITGNDLCGA 756 (790)
Q Consensus 734 -----~p-~~~~~~sl~~l~~~~n~l~~~ 756 (790)
++ ....+.+|+.+++.+|.+.+.
T Consensus 271 ~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 271 EQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp HHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred HHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 22 224577789999999977643
No 95
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.78 E-value=2e-18 Score=181.05 Aligned_cols=223 Identities=17% Similarity=0.123 Sum_probs=138.8
Q ss_pred CCCcEEEccCCcccccCCcCCCCCCCCCEEEccCCcccc-cCCccccCCCCCcE-EECcCCcccccCchhhhhcCCCCcE
Q 047929 481 PDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSG-IIPVPFENCSQLVA-LDMGENEFVGNIPTWMGERFSRLRI 558 (790)
Q Consensus 481 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~-~~~~~l~~l~~L~~-L~l~~n~~~~~~~~~~~~~~~~L~~ 558 (790)
+++++|++++|+++...+..|..+++|++|+|++|++.+ +.+..|.+++++.+ +.+..|.+. .++...+..+++|++
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~-~l~~~~f~~l~~L~~ 108 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLL-YINPEAFQNLPNLQY 108 (350)
T ss_dssp TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCC-EECTTSBCCCTTCCE
T ss_pred CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCccc-ccCchhhhhcccccc
Confidence 456666777766665444556666666777776666543 33345666666554 344445555 333333345666666
Q ss_pred EEcCCCcccccCCccccCCCCCcEEEccCC-cccccCCcchhccccccccCCccccceeecccccccceeeeeeeeeccc
Q 047929 559 LNLRSNKLHGIFPIQICHLSSLQILDVAYN-RLSGSVPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGF 637 (790)
Q Consensus 559 L~L~~n~~~~~~~~~~~~l~~L~~L~ls~n-~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 637 (790)
|++++|++....+..+....++..+++.++ .+....+..+..+
T Consensus 109 L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~------------------------------------ 152 (350)
T 4ay9_X 109 LLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGL------------------------------------ 152 (350)
T ss_dssp EEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTS------------------------------------
T ss_pred ccccccccccCCchhhcccchhhhhhhccccccccccccchhhc------------------------------------
Confidence 666666666554444555555666666543 2322111122211
Q ss_pred hhhhhhcccceeEEEccCccCCCCCCcccccCCCCCEEeCCC-CcCCcCCCccccCCCCCCEEeCcCccCccccCccccC
Q 047929 638 MVEYNSILNLVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSH-NSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSS 716 (790)
Q Consensus 638 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~ 716 (790)
...++.|++++|++. .+|.......+|++|++.+ |.++...+++|.++++|++||+++|+++...+..
T Consensus 153 -------~~~l~~L~L~~N~i~-~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~--- 221 (350)
T 4ay9_X 153 -------SFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG--- 221 (350)
T ss_dssp -------BSSCEEEECCSSCCC-EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS---
T ss_pred -------chhhhhhcccccccc-CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh---
Confidence 224567899999988 4555555567888999875 5555444457888899999999999988544433
Q ss_pred CCCCCEEECcCCcccccCCCCCcCCccCCccccCC
Q 047929 717 LSFLNHLNLSDNKLVGKIPSSTQLQSFGASSITGN 751 (790)
Q Consensus 717 l~~L~~L~l~~n~l~~~~p~~~~~~sl~~l~~~~n 751 (790)
+.+|+.|.+.+|.-...+|....+.+|+.+.+.++
T Consensus 222 ~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 222 LENLKKLRARSTYNLKKLPTLEKLVALMEASLTYP 256 (350)
T ss_dssp CTTCCEEECTTCTTCCCCCCTTTCCSCCEEECSCH
T ss_pred hccchHhhhccCCCcCcCCCchhCcChhhCcCCCC
Confidence 46777888877777778887777888888877665
No 96
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.75 E-value=4e-18 Score=187.63 Aligned_cols=207 Identities=25% Similarity=0.361 Sum_probs=136.9
Q ss_pred CCCCCCCCCCCc-----ccCce-eecCCCCcEEEEEcCCCCCCccccccCcCCCCCCEEeCCCCCCCCCCcCccccCCCC
Q 047929 24 HLASWIGDVDCC-----EWGGV-VCNNITGHVLELNLERSELGGKINPALVDLKHLNLLDLSGNDFQGIQIPEYIGSMDN 97 (790)
Q Consensus 24 ~~~~w~~~~~~~-----~~~~~-~c~~~~~~v~~L~L~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~l~~~~~~l~~ 97 (790)
.+.+|.....+| .|.++ .|. .+++++|+++++.+++ +|..+ +++|++|+|++|.+. .+| ..+++
T Consensus 32 ~l~~W~~~~~~~~~~~~~~~~l~~C~--~~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~--~ip---~~l~~ 101 (571)
T 3cvr_A 32 AWDKWEKQALPGENRNEAVSLLKECL--INQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI--SLP---ELPAS 101 (571)
T ss_dssp HHHHHHTTCCTTCCHHHHHHHHHHHH--HTTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS--CCC---CCCTT
T ss_pred HHHHHhccCCccccccchhhhccccc--cCCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc--ccc---cccCC
Confidence 345674445667 68888 785 4689999999999986 67656 389999999999998 467 45799
Q ss_pred CCEEeCCCCcccccCCCCCCCCCCCcEEECcCCcccccccCccccCCCCCCcEEECCCCCCCCCchhHHhhCCCCCCCEE
Q 047929 98 LRYLNLSGAGFAGWIPHQLGNLSNLMHLDLSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVL 177 (790)
Q Consensus 98 L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~ls~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L 177 (790)
|++|++++|.+++ +|. +.. +|++|++++|.+...+. .+++|+.|++++|.+...+. .+++|++|
T Consensus 102 L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~lp~------~l~~L~~L~Ls~N~l~~lp~------~l~~L~~L 165 (571)
T 3cvr_A 102 LEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTMLPE------LPALLEYINADNNQLTMLPE------LPTSLEVL 165 (571)
T ss_dssp CCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSCCCC------CCTTCCEEECCSSCCSCCCC------CCTTCCEE
T ss_pred CCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCCCCC------cCccccEEeCCCCccCcCCC------cCCCcCEE
Confidence 9999999999998 777 665 99999999997664322 45667777777666665432 34566666
Q ss_pred EccCccccccCcccCcCCCCCCEEECCCCCCCCCCcchhccCCCCC-------cEEEccCCcCCCCCCccCCCCCCCcEE
Q 047929 178 KLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDL-------VFLDLSSNIFRGPIPDGFKNLTSLRYL 250 (790)
Q Consensus 178 ~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~L-------~~L~l~~~~~~~~~p~~~~~l~~L~~L 250 (790)
++++|.+..++. +. ++|++|++++|.++ .+|. +.. +| +.|++++|.+. .+|..+..+++|+.|
T Consensus 166 ~Ls~N~L~~lp~--l~--~~L~~L~Ls~N~L~--~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L 235 (571)
T 3cvr_A 166 SVRNNQLTFLPE--LP--ESLEALDVSTNLLE--SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTI 235 (571)
T ss_dssp ECCSSCCSCCCC--CC--TTCCEEECCSSCCS--SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEE
T ss_pred ECCCCCCCCcch--hh--CCCCEEECcCCCCC--chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEE
Confidence 666666655443 33 56666666666553 3444 322 44 55555555555 345445555555555
Q ss_pred eCCCCcCCcccccccc
Q 047929 251 DLSYNQFNSTISDCFS 266 (790)
Q Consensus 251 ~l~~~~~~~~~~~~l~ 266 (790)
++++|++++..|..+.
T Consensus 236 ~L~~N~l~~~~p~~l~ 251 (571)
T 3cvr_A 236 ILEDNPLSSRIRESLS 251 (571)
T ss_dssp ECCSSSCCHHHHHHHH
T ss_pred EeeCCcCCCcCHHHHH
Confidence 5555555555444443
No 97
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.74 E-value=1.1e-17 Score=161.35 Aligned_cols=86 Identities=24% Similarity=0.357 Sum_probs=43.6
Q ss_pred CCCCEEEccCCcccccCCccccCCCCCcEEECcCCcccccCchhhhhcCCCCcEEEcCCCcccccCCccccCCCCCcEEE
Q 047929 505 TSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILD 584 (790)
Q Consensus 505 ~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ 584 (790)
++|++|++++|.++.+.+..|..+++|++|++++|.+. .++...+..+++|++|++++|++++..+..+..+++|++|+
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 106 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELA 106 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccC-ccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEE
Confidence 45555666555555544444555555555555555554 23332223445555555555555544444445555555555
Q ss_pred ccCCccc
Q 047929 585 VAYNRLS 591 (790)
Q Consensus 585 ls~n~l~ 591 (790)
+++|.+.
T Consensus 107 L~~N~l~ 113 (208)
T 2o6s_A 107 LNTNQLQ 113 (208)
T ss_dssp CCSSCCC
T ss_pred cCCCcCc
Confidence 5555444
No 98
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.73 E-value=9.7e-18 Score=175.85 Aligned_cols=240 Identities=18% Similarity=0.136 Sum_probs=122.4
Q ss_pred cccCceeecCCCCcEEEEEcCCCCCCccccccCcCCCCCCEEeCCCCCCCCCCcC-ccccCCCCCCEEeCCCCcccccCC
Q 047929 35 CEWGGVVCNNITGHVLELNLERSELGGKINPALVDLKHLNLLDLSGNDFQGIQIP-EYIGSMDNLRYLNLSGAGFAGWIP 113 (790)
Q Consensus 35 ~~~~~~~c~~~~~~v~~L~L~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~l~-~~~~~l~~L~~L~Ls~~~~~~~lp 113 (790)
|.|..|.|.+ ++++ .+|..+ .+++++|+|++|+++ .+| .+|.++++|++|+|++|++.+.+|
T Consensus 9 C~~~~v~C~~------------~~Lt-~iP~~l--~~~l~~L~Ls~N~i~--~i~~~~f~~l~~L~~L~Ls~N~i~~~i~ 71 (350)
T 4ay9_X 9 CSNRVFLCQE------------SKVT-EIPSDL--PRNAIELRFVLTKLR--VIQKGAFSGFGDLEKIEISQNDVLEVIE 71 (350)
T ss_dssp EETTEEEEES------------TTCC-SCCTTC--CTTCSEEEEESCCCS--EECTTSSTTCTTCCEEEEECCTTCCEEC
T ss_pred eeCCEEEecC------------CCCC-ccCcCc--CCCCCEEEccCCcCC--CcCHHHHcCCCCCCEEECcCCCCCCccC
Confidence 6777777752 3333 344433 246666777776666 334 346666777777777766654343
Q ss_pred -CCCCCCCCCcE-EECcCCcccccccCccccCCCCCCcEEECCCCCCCCCchhHHhhCCCCCCCEEEccC-ccccccCcc
Q 047929 114 -HQLGNLSNLMH-LDLSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFS-CKLHHFAPL 190 (790)
Q Consensus 114 -~~l~~l~~L~~-L~ls~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~-~~~~~~~~~ 190 (790)
.+|.++++|++ +.+++|++...+. ..++++++|++|++++|.+...+.. .+....++..+++.+ +.+..++..
T Consensus 72 ~~~f~~L~~l~~~l~~~~N~l~~l~~--~~f~~l~~L~~L~l~~n~l~~~~~~--~~~~~~~l~~l~l~~~~~i~~l~~~ 147 (350)
T 4ay9_X 72 ADVFSNLPKLHEIRIEKANNLLYINP--EAFQNLPNLQYLLISNTGIKHLPDV--HKIHSLQKVLLDIQDNINIHTIERN 147 (350)
T ss_dssp TTSBCSCTTCCEEEEEEETTCCEECT--TSBCCCTTCCEEEEEEECCSSCCCC--TTCCBSSCEEEEEESCTTCCEECTT
T ss_pred hhHhhcchhhhhhhcccCCcccccCc--hhhhhccccccccccccccccCCch--hhcccchhhhhhhcccccccccccc
Confidence 34566666554 3334444332211 1233444444444444444333110 223334455555543 345555555
Q ss_pred cCcCCC-CCCEEECCCCCCCCCCcchhccCCCCCcEEEccC-CcCCCCCCccCCCCCCCcEEeCCCCcCCccccccccCC
Q 047929 191 ASANFS-SLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSS-NIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNF 268 (790)
Q Consensus 191 ~l~~l~-~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L~l~~-~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l 268 (790)
.|..+. .++.|++++|.++ .+|..+....+|++|++.+ |.+....+..|..+++|++|++++|+++...+..+
T Consensus 148 ~f~~~~~~l~~L~L~~N~i~--~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~--- 222 (350)
T 4ay9_X 148 SFVGLSFESVILWLNKNGIQ--EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGL--- 222 (350)
T ss_dssp SSTTSBSSCEEEECCSSCCC--EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSC---
T ss_pred chhhcchhhhhhcccccccc--CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhh---
Confidence 555543 4666666666663 3555555555666666654 34443333455666666666666666665443333
Q ss_pred CCCCEEEccCcccccccCcccccCCCCCCEEEcc
Q 047929 269 DDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLS 302 (790)
Q Consensus 269 ~~L~~L~l~~~~l~~~~~~~~l~~l~~L~~L~l~ 302 (790)
.+|+.|.+.++.-...+|. +..+++|+.+++.
T Consensus 223 ~~L~~L~~l~~~~l~~lP~--l~~l~~L~~l~l~ 254 (350)
T 4ay9_X 223 ENLKKLRARSTYNLKKLPT--LEKLVALMEASLT 254 (350)
T ss_dssp TTCCEEECTTCTTCCCCCC--TTTCCSCCEEECS
T ss_pred ccchHhhhccCCCcCcCCC--chhCcChhhCcCC
Confidence 3444444433332223443 4455555555554
No 99
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.73 E-value=2.1e-17 Score=159.50 Aligned_cols=111 Identities=23% Similarity=0.313 Sum_probs=84.1
Q ss_pred CCCcEEEccCCcccccCCcCCCCCCCCCEEEccCCcccccCCccccCCCCCcEEECcCCcccccCchhhhhcCCCCcEEE
Q 047929 481 PDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILN 560 (790)
Q Consensus 481 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ 560 (790)
++|++|++++|.+++..+..|..+++|++|++++|+++.+.+..|..+++|++|++++|.+. .++...+..+++|++|+
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~ 106 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ-SLPNGVFDKLTQLKELA 106 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEE
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCC-ccCHhHhcCccCCCEEE
Confidence 57788888888887666666777888888888888888776667778888888888888877 44444445678888888
Q ss_pred cCCCcccccCCccccCCCCCcEEEccCCcccc
Q 047929 561 LRSNKLHGIFPIQICHLSSLQILDVAYNRLSG 592 (790)
Q Consensus 561 L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~ 592 (790)
+++|++++..+..+..+++|+.|++++|.+++
T Consensus 107 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 138 (208)
T 2o6s_A 107 LNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKS 138 (208)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred cCCCcCcccCHhHhccCCcCCEEECCCCccce
Confidence 88888887666667777778877777777653
No 100
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.73 E-value=4.4e-17 Score=179.38 Aligned_cols=94 Identities=32% Similarity=0.476 Sum_probs=45.0
Q ss_pred CCCcEEEccCCcccccCCcCCCCCCCCCEEEccCCcccccCCccccCCCCCcEEECcCCcccccCchhhhhcCCCCcEEE
Q 047929 481 PDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILN 560 (790)
Q Consensus 481 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ 560 (790)
++|+.|++++|.++ .+| ..+++|+.|++++|+++++ |. +.. +|+.|++++|.+.+ +|. .+++|++|+
T Consensus 80 ~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~i-p~-l~~--~L~~L~Ls~N~l~~-lp~----~l~~L~~L~ 146 (571)
T 3cvr_A 80 PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLSTL-PE-LPA--SLKHLDVDNNQLTM-LPE----LPALLEYIN 146 (571)
T ss_dssp TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSCC-CC-CCT--TCCEEECCSSCCSC-CCC----CCTTCCEEE
T ss_pred CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCCc-ch-hhc--CCCEEECCCCcCCC-CCC----cCccccEEe
Confidence 45555555555555 333 2245555555555555542 22 322 55555555555543 333 244555555
Q ss_pred cCCCcccccCCccccCCCCCcEEEccCCccc
Q 047929 561 LRSNKLHGIFPIQICHLSSLQILDVAYNRLS 591 (790)
Q Consensus 561 L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~ 591 (790)
+++|++++ +|. .+++|+.|++++|.++
T Consensus 147 Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~ 173 (571)
T 3cvr_A 147 ADNNQLTM-LPE---LPTSLEVLSVRNNQLT 173 (571)
T ss_dssp CCSSCCSC-CCC---CCTTCCEEECCSSCCS
T ss_pred CCCCccCc-CCC---cCCCcCEEECCCCCCC
Confidence 55555543 222 2344555555555444
No 101
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.72 E-value=1.4e-17 Score=161.75 Aligned_cols=178 Identities=20% Similarity=0.229 Sum_probs=120.3
Q ss_pred EEECcCCcccccCchhhhhcCCCCcEEEcCCCcccccCC-ccccCCCCCcEEEccCCcccccCCcchhccccccccCCcc
Q 047929 533 ALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFP-IQICHLSSLQILDVAYNRLSGSVPKCINNFTAMATIGSHH 611 (790)
Q Consensus 533 ~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~-~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~~~~ 611 (790)
.+++++|.+. .+|..+ .+.+++|++++|++++..+ ..|..+++|+.|++++|.+++..+..+.++++
T Consensus 15 ~l~~s~n~l~-~iP~~~---~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~-------- 82 (220)
T 2v70_A 15 TVDCSNQKLN-KIPEHI---PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASG-------- 82 (220)
T ss_dssp EEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTT--------
T ss_pred EeEeCCCCcc-cCccCC---CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCC--------
Confidence 4555555544 344432 2345666666666665533 33566677777777777666554444444333
Q ss_pred ccceeecccccccceeeeeeeeeccchhhhhhcccceeEEEccCccCCCCCCcccccCCCCCEEeCCCCcCCcCCCcccc
Q 047929 612 QVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIG 691 (790)
Q Consensus 612 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~ 691 (790)
|++|+|++|.+.+..+..|..+++|++|++++|.+++..|..|.
T Consensus 83 ------------------------------------L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 126 (220)
T 2v70_A 83 ------------------------------------VNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFI 126 (220)
T ss_dssp ------------------------------------CCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSST
T ss_pred ------------------------------------CCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcC
Confidence 34677777777766666688889999999999999888888899
Q ss_pred CCCCCCEEeCcCccCccccCccccCCCCCCEEECcCCcccccCCCCCcCCccCCc-cccCCcccCCCC
Q 047929 692 NMRSIESLDLSGNQISGKIPQSMSSLSFLNHLNLSDNKLVGKIPSSTQLQSFGAS-SITGNDLCGAPL 758 (790)
Q Consensus 692 ~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~sl~~l-~~~~n~l~~~~~ 758 (790)
.+++|++|++++|++.+..|..|..+++|+.|++++|++.+..+......-++.. ...++..|..|.
T Consensus 127 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~l~~~~~~~~~~~~~~~C~~P~ 194 (220)
T 2v70_A 127 GLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYLAWLGEWLRKKRIVTGNPRCQKPY 194 (220)
T ss_dssp TCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGGHHHHHHHHHSCCBCCCCEEEESG
T ss_pred CCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCchHHHHHHHHhcCccccCCccCCCh
Confidence 9999999999999999888889999999999999999988765532221111111 134556676664
No 102
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.71 E-value=3e-16 Score=153.36 Aligned_cols=167 Identities=20% Similarity=0.249 Sum_probs=114.4
Q ss_pred CCCCCCCCCCCCcccCceeecCCCCcEEEEEcCCCCCCccccccCcCCCCCCEEeCCCCCCCCCCcCccccCCCCCCEEe
Q 047929 23 NHLASWIGDVDCCEWGGVVCNNITGHVLELNLERSELGGKINPALVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLN 102 (790)
Q Consensus 23 ~~~~~w~~~~~~~~~~~~~c~~~~~~v~~L~L~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~l~~~~~~l~~L~~L~ 102 (790)
+....|..++..|.|.++.|.+ +.++ .+|..+. ++|++|+|++|.+.+. .|..+..+++|++|+
T Consensus 7 ~~~~~~~~~~~~Cs~~~v~c~~------------~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~ 70 (229)
T 3e6j_A 7 HHHSAACPSQCSCSGTTVDCRS------------KRHA-SVPAGIP--TNAQILYLHDNQITKL-EPGVFDSLINLKELY 70 (229)
T ss_dssp ----CCCCTTCEEETTEEECTT------------SCCS-SCCSCCC--TTCSEEECCSSCCCCC-CTTTTTTCTTCCEEE
T ss_pred chhhccCCCCCEEeCCEeEccC------------CCcC-ccCCCCC--CCCCEEEcCCCccCcc-CHHHhhCccCCcEEE
Confidence 4455666658899999999963 2232 4444333 7788888888888765 567777888888888
Q ss_pred CCCCcccccCCCCCCCCCCCcEEECcCCcccccccCccccCCCCCCcEEECCCCCCCCCchhHHhhCCCCCCCEEEccCc
Q 047929 103 LSGAGFAGWIPHQLGNLSNLMHLDLSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSC 182 (790)
Q Consensus 103 Ls~~~~~~~lp~~l~~l~~L~~L~ls~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 182 (790)
+++|.+....+..+..+++|++|++++|.
T Consensus 71 L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~--------------------------------------------------- 99 (229)
T 3e6j_A 71 LGSNQLGALPVGVFDSLTQLTVLDLGTNQ--------------------------------------------------- 99 (229)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSC---------------------------------------------------
T ss_pred CCCCCCCCcChhhcccCCCcCEEECCCCc---------------------------------------------------
Confidence 88888766444555667777777666553
Q ss_pred cccccCcccCcCCCCCCEEECCCCCCCCCCcchhccCCCCCcEEEccCCcCCCCCCccCCCCCCCcEEeCCCCcCCc
Q 047929 183 KLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNS 259 (790)
Q Consensus 183 ~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~ 259 (790)
+..+++..|..+++|++|++++|.+. .+|..+..+++|++|++++|.+.+..+..|..+++|++|++++|.+..
T Consensus 100 -l~~l~~~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 100 -LTVLPSAVFDRLVHLKELFMCCNKLT--ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp -CCCCCTTTTTTCTTCCEEECCSSCCC--SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred -CCccChhHhCcchhhCeEeccCCccc--ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence 33444555667777777777777774 567777777788888888887776555667777778888877777653
No 103
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.70 E-value=1.5e-16 Score=154.44 Aligned_cols=153 Identities=18% Similarity=0.245 Sum_probs=116.5
Q ss_pred cEEECcCCcccccCchhhhhcCCCCcEEEcCCCcccccCCccccCCCCCcEEEccCCcccccCCcchhccccccccCCcc
Q 047929 532 VALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCINNFTAMATIGSHH 611 (790)
Q Consensus 532 ~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~~~~ 611 (790)
+.++++++.+. .+|..+ .++++.|++++|++++..+..|..+++|+.|++++|.+.+..|..+.++++
T Consensus 14 ~~v~c~~~~l~-~iP~~l---~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~-------- 81 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNL---PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRS-------- 81 (220)
T ss_dssp TEEECTTSCCS-SCCSSC---CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSS--------
T ss_pred CEEEcCCCCcC-cCCCcc---CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcC--------
Confidence 34555555554 455433 256777777777777666667777778888888888777666666655444
Q ss_pred ccceeecccccccceeeeeeeeeccchhhhhhcccceeEEEccCccCCCCCCcccccCCCCCEEeCCCCcCCcCCCcccc
Q 047929 612 QVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIG 691 (790)
Q Consensus 612 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~ 691 (790)
|++|+|++|.+....+..|..+++|++|+|++|.+++..|..|.
T Consensus 82 ------------------------------------L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~ 125 (220)
T 2v9t_B 82 ------------------------------------LNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQ 125 (220)
T ss_dssp ------------------------------------CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred ------------------------------------CCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcC
Confidence 35788888888755555678889999999999999888888899
Q ss_pred CCCCCCEEeCcCccCccccCccccCCCCCCEEECcCCcccc
Q 047929 692 NMRSIESLDLSGNQISGKIPQSMSSLSFLNHLNLSDNKLVG 732 (790)
Q Consensus 692 ~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~ 732 (790)
.+++|++|++++|++.+..+..|..+++|++|++++|++..
T Consensus 126 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 126 DLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 99999999999999998777788889999999999998865
No 104
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.69 E-value=2.6e-16 Score=159.98 Aligned_cols=172 Identities=24% Similarity=0.281 Sum_probs=104.9
Q ss_pred CcCCCCCCEEeCCCCCCCCCCcCccccCCCCCCEEeCCCCcccccCCCCCCCCCCCcEEECcCCcccccccCccccCCCC
Q 047929 67 LVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHLDLSGSYYELRVEDISWLAGPS 146 (790)
Q Consensus 67 l~~l~~L~~L~Ls~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~ls~~~~~~~~~~~~~l~~l~ 146 (790)
+.++++|++|++++|.+.. ++ .+..+++|++|++++|.+++ ++. +..+++|++|++++|.+... .
T Consensus 42 ~~~l~~L~~L~l~~~~i~~--~~-~~~~l~~L~~L~L~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~----~------ 106 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKS--VQ-GIQYLPNVTKLFLNGNKLTD-IKP-LANLKNLGWLFLDENKVKDL----S------ 106 (291)
T ss_dssp HHHHHTCCEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCG----G------
T ss_pred hhhcCcccEEEccCCCccc--Ch-hHhcCCCCCEEEccCCccCC-Ccc-cccCCCCCEEECCCCcCCCC----h------
Confidence 3466777777777777763 33 36667777777777777776 333 77777777777777654321 1
Q ss_pred CCcEEECCCCCCCCCchhHHhhCCCCCCCEEEccCccccccCcccCcCCCCCCEEECCCCCCCCCCcchhccCCCCCcEE
Q 047929 147 LLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFL 226 (790)
Q Consensus 147 ~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L 226 (790)
.+..+++|++|++++|.+..+ ..+..+++|++|++++|.+.+ + ..+..+++|++|
T Consensus 107 --------------------~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~--~-~~l~~l~~L~~L 161 (291)
T 1h6t_A 107 --------------------SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITD--I-TVLSRLTKLDTL 161 (291)
T ss_dssp --------------------GGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCC--C-GGGGGCTTCSEE
T ss_pred --------------------hhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCc--c-hhhccCCCCCEE
Confidence 244455555555555555443 235556666666666666643 2 345566666666
Q ss_pred EccCCcCCCCCCccCCCCCCCcEEeCCCCcCCccccccccCCCCCCEEEccCcccc
Q 047929 227 DLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQ 282 (790)
Q Consensus 227 ~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~ 282 (790)
++++|.+.+..+ +..+++|++|++++|.+.+. ..+..+++|+.|++++|++.
T Consensus 162 ~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l--~~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 162 SLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp ECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEEEEEEEEE
T ss_pred EccCCccccchh--hcCCCccCEEECCCCcCCCC--hhhccCCCCCEEECcCCccc
Confidence 666666664332 66666677777766666553 23666666666666666654
No 105
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.68 E-value=3.4e-16 Score=159.11 Aligned_cols=170 Identities=20% Similarity=0.309 Sum_probs=100.7
Q ss_pred CCCCCEEEccCCcccccCCccccCCCCCcEEECcCCcccccCchhhhhcCCCCcEEEcCCCcccccCCccccCCCCCcEE
Q 047929 504 LTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQIL 583 (790)
Q Consensus 504 l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L 583 (790)
+++|+.|++++|.+... ..+..+++|+.|++++|.+.+ ++. ...+++|++|++++|++++. ..+..+++|+.|
T Consensus 45 l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~-~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L 117 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTD-IKP--LANLKNLGWLFLDENKVKDL--SSLKDLKKLKSL 117 (291)
T ss_dssp HHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCC-CGG--GTTCTTCCEEECCSSCCCCG--GGGTTCTTCCEE
T ss_pred cCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCC-Ccc--cccCCCCCEEECCCCcCCCC--hhhccCCCCCEE
Confidence 44455555555544433 124445555555555555542 222 22455555566655555532 225566666666
Q ss_pred EccCCcccccCCcchhccccccccCCccccceeecccccccceeeeeeeeeccchhhhhhcccceeEEEccCccCCCCCC
Q 047929 584 DVAYNRLSGSVPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGEIP 663 (790)
Q Consensus 584 ~ls~n~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 663 (790)
++++|.+.+. ..+.. ++.|+.|++++|.+.+.
T Consensus 118 ~L~~n~i~~~--~~l~~--------------------------------------------l~~L~~L~l~~n~l~~~-- 149 (291)
T 1h6t_A 118 SLEHNGISDI--NGLVH--------------------------------------------LPQLESLYLGNNKITDI-- 149 (291)
T ss_dssp ECTTSCCCCC--GGGGG--------------------------------------------CTTCCEEECCSSCCCCC--
T ss_pred ECCCCcCCCC--hhhcC--------------------------------------------CCCCCEEEccCCcCCcc--
Confidence 6666665531 11221 22345666676666643
Q ss_pred cccccCCCCCEEeCCCCcCCcCCCccccCCCCCCEEeCcCccCccccCccccCCCCCCEEECcCCcccc
Q 047929 664 MEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLSFLNHLNLSDNKLVG 732 (790)
Q Consensus 664 ~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~ 732 (790)
..+..+++|++|++++|.+++..+ +..+++|+.|++++|.+.. +| .+..+++|+.|++++|++..
T Consensus 150 ~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 150 TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccC
Confidence 456777888888888888775443 7778888888888888875 33 37778888888888888765
No 106
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.68 E-value=4.3e-16 Score=152.31 Aligned_cols=155 Identities=20% Similarity=0.251 Sum_probs=119.4
Q ss_pred cEEECcCCcccccCchhhhhcCCCCcEEEcCCCcccccCCccccCCCCCcEEEccCCcccccCCcchhccccccccCCcc
Q 047929 532 VALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCINNFTAMATIGSHH 611 (790)
Q Consensus 532 ~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~~~~ 611 (790)
+.++++++.+. .+|..+ .++|++|++++|++++..+..+..+++|+.|++++|.+....+..+..+++
T Consensus 22 ~~v~c~~~~l~-~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~-------- 89 (229)
T 3e6j_A 22 TTVDCRSKRHA-SVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQ-------- 89 (229)
T ss_dssp TEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT--------
T ss_pred CEeEccCCCcC-ccCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCC--------
Confidence 45566655554 555443 367778888888887777777778888888888888876444344444333
Q ss_pred ccceeecccccccceeeeeeeeeccchhhhhhcccceeEEEccCccCCCCCCcccccCCCCCEEeCCCCcCCcCCCcccc
Q 047929 612 QVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIG 691 (790)
Q Consensus 612 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~ 691 (790)
|+.|+|++|.+.+..+..+..+++|++|++++|.++ .+|..+.
T Consensus 90 ------------------------------------L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~ 132 (229)
T 3e6j_A 90 ------------------------------------LTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIE 132 (229)
T ss_dssp ------------------------------------CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGG
T ss_pred ------------------------------------cCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccc
Confidence 457888888888666666788999999999999998 7788889
Q ss_pred CCCCCCEEeCcCccCccccCccccCCCCCCEEECcCCcccccCC
Q 047929 692 NMRSIESLDLSGNQISGKIPQSMSSLSFLNHLNLSDNKLVGKIP 735 (790)
Q Consensus 692 ~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p 735 (790)
.+++|++|++++|++....+..+..+++|+.|++++|++.+..+
T Consensus 133 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 133 RLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp GCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred cCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 99999999999999997777788999999999999999987665
No 107
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.67 E-value=2.9e-16 Score=175.11 Aligned_cols=186 Identities=24% Similarity=0.278 Sum_probs=108.2
Q ss_pred EEEcCCCCCCccccccCcCCCCCCEEeCCCCCCCCCCcCccccCCCCCCEEeCCCCcccccCCCCCCCCCCCcEEECcCC
Q 047929 51 ELNLERSELGGKINPALVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHLDLSGS 130 (790)
Q Consensus 51 ~L~L~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~ls~~ 130 (790)
.+.+....+.+.. .+..+++|+.|++++|.+.. ++ .+..+++|++|+|++|.+.+ ++. +..+++|++|+|++|
T Consensus 25 ~l~l~~~~i~~~~--~~~~L~~L~~L~l~~n~i~~--l~-~l~~l~~L~~L~Ls~N~l~~-~~~-l~~l~~L~~L~Ls~N 97 (605)
T 1m9s_A 25 KDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKS--VQ-GIQYLPNVTKLFLNGNKLTD-IKP-LTNLKNLGWLFLDEN 97 (605)
T ss_dssp HHHTTCSCTTSEE--CHHHHTTCCCCBCTTCCCCC--CT-TGGGCTTCCEEECTTSCCCC-CGG-GGGCTTCCEEECCSS
T ss_pred HHhccCCCccccc--chhcCCCCCEEECcCCCCCC--Ch-HHccCCCCCEEEeeCCCCCC-Chh-hccCCCCCEEECcCC
Confidence 3444555544332 24567777778888777763 33 46777888888888887776 333 777777777777777
Q ss_pred cccccccCccccCCCCCCcEEECCCCCCCCCchhHHhhCCCCCCCEEEccCccccccCcccCcCCCCCCEEECCCCCCCC
Q 047929 131 YYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGK 210 (790)
Q Consensus 131 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~ 210 (790)
.+... ..+. .+++|++|++++|.+..+ ..+..+++|+.|+|++|.+.+
T Consensus 98 ~l~~l----~~l~--------------------------~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~ 145 (605)
T 1m9s_A 98 KIKDL----SSLK--------------------------DLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITD 145 (605)
T ss_dssp CCCCC----TTST--------------------------TCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCC
T ss_pred CCCCC----hhhc--------------------------cCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCC
Confidence 64421 2233 444444444444444443 234455555666666655533
Q ss_pred CCcchhccCCCCCcEEEccCCcCCCCCCccCCCCCCCcEEeCCCCcCCccccccccCCCCCCEEEccCcccc
Q 047929 211 TSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQ 282 (790)
Q Consensus 211 ~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~ 282 (790)
+ ..+..+++|+.|+|++|.+.+..| +..+++|+.|++++|.+.+. ..+..+++|+.|++++|++.
T Consensus 146 --l-~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 146 --I-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECL 210 (605)
T ss_dssp --C-GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEE
T ss_pred --c-hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCc
Confidence 2 345556666666666666554333 55666666666666666543 24556666666666666554
No 108
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.66 E-value=1e-15 Score=148.47 Aligned_cols=155 Identities=19% Similarity=0.257 Sum_probs=102.0
Q ss_pred cEEEccCCcccccCCcCCCCCCCCCEEEccCCcccccCCccccCCCCCcEEECcCCcccccCchhhhhcCCCCcEEEcCC
Q 047929 484 RVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRS 563 (790)
Q Consensus 484 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~ 563 (790)
+.+++++|.++ .+|..+. +.+++|++++|.+++.. +...+..+++|++|++++
T Consensus 14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~------------------------~~~~~~~l~~L~~L~L~~ 66 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLE------------------------ATGIFKKLPQLRKINFSN 66 (220)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEEC------------------------CCCCGGGCTTCCEEECCS
T ss_pred CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccC------------------------chhhhccCCCCCEEECCC
Confidence 35666666665 2443332 34455555555555442 222223455666666666
Q ss_pred CcccccCCccccCCCCCcEEEccCCcccccCCcchhccccccccCCccccceeecccccccceeeeeeeeeccchhhhhh
Q 047929 564 NKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNS 643 (790)
Q Consensus 564 n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 643 (790)
|++++..+..|..+++|++|++++|.+++..|..+.++++
T Consensus 67 N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~---------------------------------------- 106 (220)
T 2v70_A 67 NKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLES---------------------------------------- 106 (220)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSS----------------------------------------
T ss_pred CcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcC----------------------------------------
Confidence 6666555556666777777777777766554444444333
Q ss_pred cccceeEEEccCccCCCCCCcccccCCCCCEEeCCCCcCCcCCCccccCCCCCCEEeCcCccCccc
Q 047929 644 ILNLVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGK 709 (790)
Q Consensus 644 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~ 709 (790)
|++|+|++|.+.+..|..|..+++|++|+|++|.+++..|..|..+++|+.|++++|++...
T Consensus 107 ----L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 107 ----LKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN 168 (220)
T ss_dssp ----CCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred ----CCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence 35677777777766677788888999999999999888788888899999999999988754
No 109
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.65 E-value=4.3e-16 Score=163.94 Aligned_cols=113 Identities=20% Similarity=0.230 Sum_probs=78.7
Q ss_pred cEEEccCCcccccCCcCCCCCCCCCEEEccCCcccccCCcccc-CCCCCcEEECcCCcccccCchhhhhcCCCCcEEEcC
Q 047929 484 RVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFE-NCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLR 562 (790)
Q Consensus 484 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~-~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~ 562 (790)
+.++++++.++ .+|..+. +.++.|++++|+++.+.+..+. .+++|+.|++++|.+.+..+..+ ..+++|++|+++
T Consensus 21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~-~~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAF-VPVPNLRYLDLS 96 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTT-TTCTTCCEEECC
T ss_pred CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhc-cCCCCCCEEECC
Confidence 57888888887 4565443 5688888888888877777776 77888888888887774333333 467777777777
Q ss_pred CCcccccCCccccCCCCCcEEEccCCcccccCCcchhc
Q 047929 563 SNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCINN 600 (790)
Q Consensus 563 ~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~ 600 (790)
+|++++..+..|..+++|+.|++++|.+.+..|..+.+
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~ 134 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFED 134 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTT
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCC
Confidence 77777666666777777777777777766444444433
No 110
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.64 E-value=1.2e-15 Score=170.17 Aligned_cols=171 Identities=20% Similarity=0.298 Sum_probs=93.2
Q ss_pred CCCCCCEEEccCCcccccCCccccCCCCCcEEECcCCcccccCchhhhhcCCCCcEEEcCCCcccccCCccccCCCCCcE
Q 047929 503 TLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQI 582 (790)
Q Consensus 503 ~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~ 582 (790)
.+++|+.|++++|.+.... .+..+++|+.|+|++|.+.+..+ +..+++|+.|+|++|++.+. ..+..+++|+.
T Consensus 41 ~L~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~ 113 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKP---LTNLKNLGWLFLDENKIKDL--SSLKDLKKLKS 113 (605)
T ss_dssp HHTTCCCCBCTTCCCCCCT--TGGGCTTCCEEECTTSCCCCCGG---GGGCTTCCEEECCSSCCCCC--TTSTTCTTCCE
T ss_pred cCCCCCEEECcCCCCCCCh--HHccCCCCCEEEeeCCCCCCChh---hccCCCCCEEECcCCCCCCC--hhhccCCCCCE
Confidence 3444555555555544331 34455555555555555543222 22455555555555555532 24555666666
Q ss_pred EEccCCcccccCCcchhccccccccCCccccceeecccccccceeeeeeeeeccchhhhhhcccceeEEEccCccCCCCC
Q 047929 583 LDVAYNRLSGSVPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGEI 662 (790)
Q Consensus 583 L~ls~n~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~ 662 (790)
|+|++|.+.+. + .+.. ++.|+.|+|++|.+.+.
T Consensus 114 L~Ls~N~l~~l-~-~l~~--------------------------------------------l~~L~~L~Ls~N~l~~l- 146 (605)
T 1m9s_A 114 LSLEHNGISDI-N-GLVH--------------------------------------------LPQLESLYLGNNKITDI- 146 (605)
T ss_dssp EECTTSCCCCC-G-GGGG--------------------------------------------CTTCSEEECCSSCCCCC-
T ss_pred EEecCCCCCCC-c-cccC--------------------------------------------CCccCEEECCCCccCCc-
Confidence 66666655531 1 1221 22345566666666543
Q ss_pred CcccccCCCCCEEeCCCCcCCcCCCccccCCCCCCEEeCcCccCccccCccccCCCCCCEEECcCCcccc
Q 047929 663 PMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLSFLNHLNLSDNKLVG 732 (790)
Q Consensus 663 ~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~ 732 (790)
..+..+++|+.|+|++|.+.+..| +..+++|+.|+|++|++.+. ..+..+++|+.|++++|++.+
T Consensus 147 -~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 147 -TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp -GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEEC
T ss_pred -hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcC
Confidence 445666666677776666664444 66666777777777766643 246666667777777776654
No 111
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.64 E-value=9.2e-16 Score=161.44 Aligned_cols=180 Identities=21% Similarity=0.201 Sum_probs=141.1
Q ss_pred CCEEEccCCccCCCcccccccccccccCCCccCCCCCCcEEEccCCcccccCCcCCC-CCCCCCEEEccCCcccccCCcc
Q 047929 446 LSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMG-TLTSLRSLNLRSNRLSGIIPVP 524 (790)
Q Consensus 446 L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-~l~~L~~L~L~~n~i~~~~~~~ 524 (790)
-+.++++++.+..++ ..+ .+.++.|++++|.+++..+..+. .+++|+.|++++|+++.+.+..
T Consensus 20 ~~~l~c~~~~l~~iP--------------~~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~ 83 (361)
T 2xot_A 20 SNILSCSKQQLPNVP--------------QSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEA 83 (361)
T ss_dssp TTEEECCSSCCSSCC--------------SSC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTT
T ss_pred CCEEEeCCCCcCccC--------------ccC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhh
Confidence 478999999887643 222 24689999999999988787787 8999999999999999998889
Q ss_pred ccCCCCCcEEECcCCcccccCchhhhhcCCCCcEEEcCCCcccccCCccccCCCCCcEEEccCCcccccCCcchhccccc
Q 047929 525 FENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCINNFTAM 604 (790)
Q Consensus 525 l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L 604 (790)
|..+++|+.|++++|.+. .++...+..+++|++|++++|++++..+..|..+++|+.|++++|.+++..+..+..+
T Consensus 84 ~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~--- 159 (361)
T 2xot_A 84 FVPVPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDG--- 159 (361)
T ss_dssp TTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC-----
T ss_pred ccCCCCCCEEECCCCcCC-cCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCc---
Confidence 999999999999999998 4555445689999999999999998888899999999999999999884333222111
Q ss_pred cccCCccccceeecccccccceeeeeeeeeccchhhhhhcccceeEEEccCccCCCCCCcccccCCC--CCEEeCCCCcC
Q 047929 605 ATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGEIPMEVTNLKG--LQSLNLSHNSF 682 (790)
Q Consensus 605 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~--L~~L~L~~n~l 682 (790)
..++.|+.|+|++|.+.+..+..+..++. ++.|++++|++
T Consensus 160 --------------------------------------~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~ 201 (361)
T 2xot_A 160 --------------------------------------NKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPL 201 (361)
T ss_dssp ----------------------------------------CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCE
T ss_pred --------------------------------------ccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCc
Confidence 11344567888888887544456666666 37788888876
Q ss_pred C
Q 047929 683 I 683 (790)
Q Consensus 683 ~ 683 (790)
.
T Consensus 202 ~ 202 (361)
T 2xot_A 202 E 202 (361)
T ss_dssp E
T ss_pred c
Confidence 5
No 112
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.64 E-value=5.3e-15 Score=143.45 Aligned_cols=76 Identities=22% Similarity=0.311 Sum_probs=45.5
Q ss_pred EEcCCCCCCccccccCcCCCCCCEEeCCCCCCCCCCcCccccCCCCCCEEeCCCCcccccCCCCCCCCCCCcEEECcCCc
Q 047929 52 LNLERSELGGKINPALVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHLDLSGSY 131 (790)
Q Consensus 52 L~L~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~ls~~~ 131 (790)
++.+++.++ .+|..+. ++|+.|++++|.+... .+..|..+++|++|++++|.+++..|.+|..+++|++|++++|.
T Consensus 16 v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i-~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 16 VDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVI-PPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp EECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEE-CTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred EEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCc-CHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 344445554 3444333 5677777777776643 33456666777777777776666556666666666666666553
No 113
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.62 E-value=1.4e-15 Score=145.06 Aligned_cols=78 Identities=19% Similarity=0.296 Sum_probs=45.6
Q ss_pred EEEccCccCCCCCCcccccCCCCCEEeCCCCc-CCcCCCccccCCCCCCEEeCcCccCccccCccccCCCCCCEEECcCC
Q 047929 650 SIDISMNNFSGEIPMEVTNLKGLQSLNLSHNS-FIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLSFLNHLNLSDN 728 (790)
Q Consensus 650 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n 728 (790)
+|++++|.+.+..|..+..+++|++|++++|. ++ .+| .+..+++|++|++++|++.. ++ .+..+++|++|++++|
T Consensus 116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC
T ss_pred EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCc
Confidence 44444444444444455566666666666666 43 344 46666777777777777764 33 5666777777777777
Q ss_pred ccc
Q 047929 729 KLV 731 (790)
Q Consensus 729 ~l~ 731 (790)
++.
T Consensus 192 ~i~ 194 (197)
T 4ezg_A 192 TIG 194 (197)
T ss_dssp ---
T ss_pred ccC
Confidence 654
No 114
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.61 E-value=4.5e-15 Score=141.43 Aligned_cols=153 Identities=16% Similarity=0.188 Sum_probs=124.2
Q ss_pred CcccceEEEcCCCCCCCCCCcccccCCCCCEEEccCCccCCCcccccccccccccCCCccCCCCCCcEEEccCCcccccC
Q 047929 418 PPFQLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSI 497 (790)
Q Consensus 418 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 497 (790)
.+++++.|++++|.+. .++ .+..+++|++|++++|.+... ..+..+++|++|++++|.+++..
T Consensus 42 ~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~~---------------~~l~~l~~L~~L~l~~n~l~~~~ 104 (197)
T 4ezg_A 42 QMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATNY---------------NPISGLSNLERLRIMGKDVTSDK 104 (197)
T ss_dssp HHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSCC---------------GGGTTCTTCCEEEEECTTCBGGG
T ss_pred hcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCcc---------------hhhhcCCCCCEEEeECCccCccc
Confidence 3456777777777776 344 578889999999999976543 24577899999999999999777
Q ss_pred CcCCCCCCCCCEEEccCCcccccCCccccCCCCCcEEECcCCcccccCchhhhhcCCCCcEEEcCCCcccccCCccccCC
Q 047929 498 PISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHL 577 (790)
Q Consensus 498 ~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l 577 (790)
+..+..+++|++|++++|++++..+..+..+++|++|++++|.....+| . ...+++|++|++++|++++. + .+..+
T Consensus 105 ~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~-l~~l~~L~~L~l~~n~i~~~-~-~l~~l 180 (197)
T 4ezg_A 105 IPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-P-LKTLPELKSLNIQFDGVHDY-R-GIEDF 180 (197)
T ss_dssp SCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-G-GGGCSSCCEEECTTBCCCCC-T-TGGGC
T ss_pred ChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-h-hcCCCCCCEEECCCCCCcCh-H-HhccC
Confidence 8889999999999999999998778889999999999999998344666 3 34789999999999999864 3 67889
Q ss_pred CCCcEEEccCCccc
Q 047929 578 SSLQILDVAYNRLS 591 (790)
Q Consensus 578 ~~L~~L~ls~n~l~ 591 (790)
++|+.|++++|++.
T Consensus 181 ~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 181 PKLNQLYAFSQTIG 194 (197)
T ss_dssp SSCCEEEECBC---
T ss_pred CCCCEEEeeCcccC
Confidence 99999999999875
No 115
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.60 E-value=2.4e-15 Score=142.53 Aligned_cols=112 Identities=24% Similarity=0.343 Sum_probs=80.5
Q ss_pred eeEEEccCccCCCCCCcccccCCCCCEEeCCCCcCCcCCCccccCCCCCCEEeCcCccCccccCccccCCCCCCEEECcC
Q 047929 648 VRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLSFLNHLNLSD 727 (790)
Q Consensus 648 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~ 727 (790)
|++|+|++|.+++..|..|..+++|++|++++|.+++..+..|.++++|++|++++|++++..|..+..+++|++|++++
T Consensus 56 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 135 (192)
T 1w8a_A 56 LVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLAS 135 (192)
T ss_dssp CCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTT
T ss_pred CCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCC
Confidence 45677777777766677778888888888888888877777788888888888888888888788888888888888888
Q ss_pred CcccccCCCCCcCCccCCccccCC-cccCCCCC
Q 047929 728 NKLVGKIPSSTQLQSFGASSITGN-DLCGAPLS 759 (790)
Q Consensus 728 n~l~~~~p~~~~~~sl~~l~~~~n-~l~~~~~~ 759 (790)
|++.+..+.......++...+.++ ..|+.|..
T Consensus 136 N~l~c~c~l~~~~~~l~~~~~~~~~~~C~~P~~ 168 (192)
T 1w8a_A 136 NPFNCNCHLAWFAEWLRKKSLNGGAARCGAPSK 168 (192)
T ss_dssp CCBCCSGGGHHHHHHHHHHCCSGGGCBBCSSTT
T ss_pred CCccCcCcchHHHHHHHHcCCCCCCCCCCCChH
Confidence 888776653322222333334444 55665543
No 116
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.59 E-value=4.9e-18 Score=188.29 Aligned_cols=96 Identities=25% Similarity=0.342 Sum_probs=74.0
Q ss_pred eeEEEccCccCCCCCCcccccCCCCCEEeCCCCcCCcCCCccccCCCCCCEEeCcCccCcccc-CccccCCCCCCEEECc
Q 047929 648 VRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKI-PQSMSSLSFLNHLNLS 726 (790)
Q Consensus 648 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~-p~~l~~l~~L~~L~l~ 726 (790)
|+.|+|++|.+. .+|..++.+++|++|+|++|.+++ +| .++.+++|+.|++++|++++.. |..+..+++|+.|+++
T Consensus 465 L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~ 541 (567)
T 1dce_A 465 VTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQ 541 (567)
T ss_dssp CCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECT
T ss_pred CcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEec
Confidence 457888888887 677788888888888888888875 56 7888888888888888888765 8888888888888888
Q ss_pred CCcccccCCCCCc----CCccCCc
Q 047929 727 DNKLVGKIPSSTQ----LQSFGAS 746 (790)
Q Consensus 727 ~n~l~~~~p~~~~----~~sl~~l 746 (790)
+|++.+.+|.... +++|+.|
T Consensus 542 ~N~l~~~~~~~~~l~~~lp~L~~L 565 (567)
T 1dce_A 542 GNSLCQEEGIQERLAEMLPSVSSI 565 (567)
T ss_dssp TSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred CCcCCCCccHHHHHHHHCcccCcc
Confidence 8888877665433 4445444
No 117
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.58 E-value=2.6e-17 Score=182.42 Aligned_cols=105 Identities=28% Similarity=0.297 Sum_probs=48.7
Q ss_pred CCEEECCCCCCCCCCcchhccCCCCCcEEEccCCcCCCCCCccCCCCCCCcEEeCCCCcCCccccccccCCCCCCEEEcc
Q 047929 198 LNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLG 277 (790)
Q Consensus 198 L~~L~L~~~~l~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 277 (790)
|++|++++|.+++ +|. +..+++|+.|++++|.+. .+|..++.+++|++|++++|.+++ +| .+..+++|+.|+++
T Consensus 443 L~~L~Ls~n~l~~--lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls 516 (567)
T 1dce_A 443 VRVLHLAHKDLTV--LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLC 516 (567)
T ss_dssp CSEEECTTSCCSS--CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECC
T ss_pred ceEEEecCCCCCC--CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECC
Confidence 4444454444422 343 444444555555555444 344444445555555555554443 22 44444555555555
Q ss_pred Cccccccc-CcccccCCCCCCEEEccCCCCCCC
Q 047929 278 YNRLQGTI-SSIGLENLTFIKTLDLSFNELGQD 309 (790)
Q Consensus 278 ~~~l~~~~-~~~~l~~l~~L~~L~l~~~~~~~~ 309 (790)
+|.+++.. |.. +..+++|+.|++++|.+.+.
T Consensus 517 ~N~l~~~~~p~~-l~~l~~L~~L~L~~N~l~~~ 548 (567)
T 1dce_A 517 NNRLQQSAAIQP-LVSCPRLVLLNLQGNSLCQE 548 (567)
T ss_dssp SSCCCSSSTTGG-GGGCTTCCEEECTTSGGGGS
T ss_pred CCCCCCCCCcHH-HhcCCCCCEEEecCCcCCCC
Confidence 55444332 222 44455555555555544443
No 118
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.58 E-value=1.4e-15 Score=151.96 Aligned_cols=75 Identities=17% Similarity=0.282 Sum_probs=37.5
Q ss_pred EEEEcCCCCCCccccccCcCCCCCCEEeCCCCCCCCCCcCccccCCCCCCEEeCCCCcccccCCCCCCCCCCCcEEECcC
Q 047929 50 LELNLERSELGGKINPALVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHLDLSG 129 (790)
Q Consensus 50 ~~L~L~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~ls~ 129 (790)
+.+++.++.+++.. .+..+++|++|++++|.+.. ++ .+..+++|++|++++|.+++ ++. +..+++|++|++++
T Consensus 22 ~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~--l~-~l~~l~~L~~L~L~~N~i~~-~~~-l~~l~~L~~L~L~~ 94 (263)
T 1xeu_A 22 VKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS--LA-GMQFFTNLKELHLSHNQISD-LSP-LKDLTKLEELSVNR 94 (263)
T ss_dssp HHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCSSCCEEECCS
T ss_pred HHHHhcCCCccccc--chhhcCcCcEEECcCCCccc--ch-HHhhCCCCCEEECCCCccCC-Chh-hccCCCCCEEECCC
Confidence 33444455444221 34555555555555555552 23 35555555555555555554 222 55555555555555
Q ss_pred Cc
Q 047929 130 SY 131 (790)
Q Consensus 130 ~~ 131 (790)
|.
T Consensus 95 N~ 96 (263)
T 1xeu_A 95 NR 96 (263)
T ss_dssp SC
T ss_pred Cc
Confidence 54
No 119
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.58 E-value=6.3e-15 Score=147.18 Aligned_cols=171 Identities=20% Similarity=0.215 Sum_probs=141.5
Q ss_pred CCCCCCEEeCCCCCCCCCCcCccccCCCCCCEEeCCCCcccccCCCCCCCCCCCcEEECcCCcccccccCccccCCCCCC
Q 047929 69 DLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHLDLSGSYYELRVEDISWLAGPSLL 148 (790)
Q Consensus 69 ~l~~L~~L~Ls~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~ls~~~~~~~~~~~~~l~~l~~L 148 (790)
.+.++..++++++.+.+ ++ .+..+++|++|++++|.++. ++ .+..+++|++|++++|.+...+. +.++++|
T Consensus 17 ~l~~l~~l~l~~~~i~~--~~-~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~----l~~l~~L 87 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTD--LV-SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP----LKDLTKL 87 (263)
T ss_dssp HHHHHHHHHHTCSCTTS--EE-CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG----GTTCSSC
T ss_pred HHHHHHHHHhcCCCccc--cc-chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh----hccCCCC
Confidence 45667778888888884 44 57789999999999999886 56 68899999999999998765433 7889999
Q ss_pred cEEECCCCCCCCCchhHHhhCCCCCCCEEEccCccccccCcccCcCCCCCCEEECCCCCCCCCCcchhccCCCCCcEEEc
Q 047929 149 EHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDL 228 (790)
Q Consensus 149 ~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L~l 228 (790)
++|++++|.+...+. +.. ++|++|++++|.+..++ .+..+++|++|++++|.+++ ++ .+..+++|++|++
T Consensus 88 ~~L~L~~N~l~~l~~----~~~-~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~Ls~N~i~~--~~-~l~~l~~L~~L~L 157 (263)
T 1xeu_A 88 EELSVNRNRLKNLNG----IPS-ACLSRLFLDNNELRDTD--SLIHLKNLEILSIRNNKLKS--IV-MLGFLSKLEVLDL 157 (263)
T ss_dssp CEEECCSSCCSCCTT----CCC-SSCCEEECCSSCCSBSG--GGTTCTTCCEEECTTSCCCB--CG-GGGGCTTCCEEEC
T ss_pred CEEECCCCccCCcCc----ccc-CcccEEEccCCccCCCh--hhcCcccccEEECCCCcCCC--Ch-HHccCCCCCEEEC
Confidence 999999999888653 233 89999999999988863 58899999999999999855 44 5888999999999
Q ss_pred cCCcCCCCCCccCCCCCCCcEEeCCCCcCCcc
Q 047929 229 SSNIFRGPIPDGFKNLTSLRYLDLSYNQFNST 260 (790)
Q Consensus 229 ~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~ 260 (790)
++|.+.+. ..+..+++|+.|++++|.+...
T Consensus 158 ~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 158 HGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp TTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred CCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 99999865 5689999999999999988755
No 120
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.52 E-value=3.3e-14 Score=131.63 Aligned_cols=133 Identities=22% Similarity=0.240 Sum_probs=83.7
Q ss_pred CCCcEEEcCCCccc-ccCCccccCCCCCcEEEccCCcccccCCcchhccccccccCCccccceeecccccccceeeeeee
Q 047929 554 SRLRILNLRSNKLH-GIFPIQICHLSSLQILDVAYNRLSGSVPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISL 632 (790)
Q Consensus 554 ~~L~~L~L~~n~~~-~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 632 (790)
++|+.|++++|.++ +.+|..+..+++|+.|++++|.+.+. ..+..
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~-------------------------------- 69 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPK-------------------------------- 69 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCC--------------------------------
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhcc--------------------------------
Confidence 55666666666665 34455556666666666666665532 22222
Q ss_pred eeccchhhhhhcccceeEEEccCccCCCCCCcccccCCCCCEEeCCCCcCCcCC-CccccCCCCCCEEeCcCccCccccC
Q 047929 633 VMKGFMVEYNSILNLVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKI-PETIGNMRSIESLDLSGNQISGKIP 711 (790)
Q Consensus 633 ~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~l~~n~l~~~~p 711 (790)
++.|++|++++|.+.+.+|..+..+++|++|++++|.+++.. +..+..+++|++|++++|++.+..+
T Consensus 70 ------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~ 137 (168)
T 2ell_A 70 ------------LPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLND 137 (168)
T ss_dssp ------------CSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTT
T ss_pred ------------CCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHH
Confidence 223456666666666556666666777777777777776432 2567777777777777777775444
Q ss_pred ---ccccCCCCCCEEECcCCcccc
Q 047929 712 ---QSMSSLSFLNHLNLSDNKLVG 732 (790)
Q Consensus 712 ---~~l~~l~~L~~L~l~~n~l~~ 732 (790)
..+..+++|++|++++|++..
T Consensus 138 ~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 138 YRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp HHHHHHTTCSSCCEETTEETTSCB
T ss_pred HHHHHHHhCccCcEecCCCCChhh
Confidence 367777777777777777653
No 121
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.51 E-value=1.8e-15 Score=173.19 Aligned_cols=220 Identities=18% Similarity=0.118 Sum_probs=97.0
Q ss_pred HHHHHHHHHhhcC-CCCCCCCCCC-CCCCCCcccCceeecCCCCcEEEEEcCCCCCCccccccCcCCCCCCEEeC-----
Q 047929 6 SERVALIKLKQDF-KDPSNHLASW-IGDVDCCEWGGVVCNNITGHVLELNLERSELGGKINPALVDLKHLNLLDL----- 78 (790)
Q Consensus 6 ~~~~~~~~~~~~~-~~~~~~~~~w-~~~~~~~~~~~~~c~~~~~~v~~L~L~~~~~~~~~~~~l~~l~~L~~L~L----- 78 (790)
.++.|++++.... .+.+.....| ...+....|.+..+. .++++.|+|.++.+.. .+..+.....|+.+++
T Consensus 132 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s--~~~~~~l~L~~n~~~~-~~~~~l~~l~Ls~~~i~~~~~ 208 (727)
T 4b8c_D 132 CTKQALMEMADTLTDSKTAKKQQPTGDSTPSGTATNSAVS--TPLTPKIELFANGKDE-ANQALLQHKKLSQYSIDEDDD 208 (727)
T ss_dssp CCCHHHHHHHHHHHHHHTTC------------------------------------------------------------
T ss_pred cchhhhhhhhhhcccccCcccCCCcCCCCccccCCCceec--CCccceEEeeCCCCCc-chhhHhhcCccCcccccCccc
Confidence 3667888888776 3555666778 343556788888776 5789999999988764 3444433333333332
Q ss_pred CCCCCCCCCcCccccCCCCCCEEeCCCCcccccCCCCCCCCCCCcEEECcCCcccccccCccccCCCCCCcEEECCCCCC
Q 047929 79 SGNDFQGIQIPEYIGSMDNLRYLNLSGAGFAGWIPHQLGNLSNLMHLDLSGSYYELRVEDISWLAGPSLLEHLDTSDVDL 158 (790)
Q Consensus 79 s~~~~~~~~l~~~~~~l~~L~~L~Ls~~~~~~~lp~~l~~l~~L~~L~ls~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 158 (790)
+.+.+. ..++.+..+++|+.|+|++|.+.. +|..+..+++|++|+|++|.+...+ ..++++++|++|++++|.+
T Consensus 209 ~~n~~~--~~~~~~~~l~~L~~L~Ls~n~l~~-l~~~~~~l~~L~~L~Ls~N~l~~lp---~~~~~l~~L~~L~Ls~N~l 282 (727)
T 4b8c_D 209 IENRMV--MPKDSKYDDQLWHALDLSNLQIFN-ISANIFKYDFLTRLYLNGNSLTELP---AEIKNLSNLRVLDLSHNRL 282 (727)
T ss_dssp ---------------CCCCCCEEECTTSCCSC-CCGGGGGCCSCSCCBCTTSCCSCCC---GGGGGGTTCCEEECTTSCC
T ss_pred ccccee--cChhhhccCCCCcEEECCCCCCCC-CChhhcCCCCCCEEEeeCCcCcccC---hhhhCCCCCCEEeCcCCcC
Confidence 223333 246778888999999999999885 8877888999999999988766322 3345566666666666665
Q ss_pred CCCchhHHhhCCCCCCCEEEccCccccccCcccCcCCCCCCEEECCCCCCCCCCcchhccCCC-CCcEEEccCCcCCCCC
Q 047929 159 IKASDWLLVINSLPSLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLS-DLVFLDLSSNIFRGPI 237 (790)
Q Consensus 159 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~lp~~l~~l~-~L~~L~l~~~~~~~~~ 237 (790)
...+. .+..+++|++|+|++|.+..++. .|+.+++|++|+|++|.+.+ .+|..+..+. .+..+++++|.+.+.+
T Consensus 283 ~~lp~---~~~~l~~L~~L~L~~N~l~~lp~-~~~~l~~L~~L~L~~N~l~~-~~p~~~~~~~~~~~~l~l~~N~l~~~~ 357 (727)
T 4b8c_D 283 TSLPA---ELGSCFQLKYFYFFDNMVTTLPW-EFGNLCNLQFLGVEGNPLEK-QFLKILTEKSVTGLIFYLRDNRPEIPL 357 (727)
T ss_dssp SSCCS---SGGGGTTCSEEECCSSCCCCCCS-STTSCTTCCCEECTTSCCCS-HHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_pred CccCh---hhcCCCCCCEEECCCCCCCccCh-hhhcCCCccEEeCCCCccCC-CChHHHhhcchhhhHHhhccCcccCcC
Confidence 54332 45556666666666666654433 35666666666666666544 3344333221 1122455555555544
Q ss_pred Cc
Q 047929 238 PD 239 (790)
Q Consensus 238 p~ 239 (790)
|.
T Consensus 358 p~ 359 (727)
T 4b8c_D 358 PH 359 (727)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 122
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.51 E-value=3.7e-15 Score=170.74 Aligned_cols=143 Identities=24% Similarity=0.272 Sum_probs=82.6
Q ss_pred CCccccCCCCCcEEECcCCcccccCchhhhhcCCCCcEEEcCCCcccccCCccccCCCCCcEEEccCCcccccCCcchhc
Q 047929 521 IPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCINN 600 (790)
Q Consensus 521 ~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~ 600 (790)
.+..+..++.|+.|+|++|.+. .+|..++ .+++|++|+|++|.++ .+|..|..+++|+.|+|++|.++ .+|..+.+
T Consensus 216 ~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~-~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~ 291 (727)
T 4b8c_D 216 PKDSKYDDQLWHALDLSNLQIF-NISANIF-KYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGS 291 (727)
T ss_dssp ------CCCCCCEEECTTSCCS-CCCGGGG-GCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGG
T ss_pred ChhhhccCCCCcEEECCCCCCC-CCChhhc-CCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcC
Confidence 3455556666666666666665 5555554 5666666666666666 45566666666666666666666 55555544
Q ss_pred cccccccCCccccceeecccccccceeeeeeeeeccchhhhhhcccceeEEEccCccCCCCCCcccccCCCCCEEeCCCC
Q 047929 601 FTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHN 680 (790)
Q Consensus 601 l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 680 (790)
+++| ++|+|++|.+. .+|..|+.+++|++|+|++|
T Consensus 292 l~~L--------------------------------------------~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N 326 (727)
T 4b8c_D 292 CFQL--------------------------------------------KYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGN 326 (727)
T ss_dssp GTTC--------------------------------------------SEEECCSSCCC-CCCSSTTSCTTCCCEECTTS
T ss_pred CCCC--------------------------------------------CEEECCCCCCC-ccChhhhcCCCccEEeCCCC
Confidence 4433 46666666665 55666666666777777777
Q ss_pred cCCcCCCccccCCC-CCCEEeCcCccCccccCc
Q 047929 681 SFIGKIPETIGNMR-SIESLDLSGNQISGKIPQ 712 (790)
Q Consensus 681 ~l~~~~p~~l~~l~-~L~~L~l~~n~l~~~~p~ 712 (790)
.+++.+|..+..+. .+..|++++|.+.+.+|.
T Consensus 327 ~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~ 359 (727)
T 4b8c_D 327 PLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH 359 (727)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_pred ccCCCChHHHhhcchhhhHHhhccCcccCcCcc
Confidence 66666665554331 122355666666655554
No 123
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.51 E-value=2.3e-14 Score=148.79 Aligned_cols=285 Identities=13% Similarity=0.074 Sum_probs=147.6
Q ss_pred CCCCCEEEccCCCCCCCcchhhhhhhccc-cCCCCEEEccCCccc--cccchhhccCCCCcEEEccCcccCCCCCcCcCC
Q 047929 293 LTFIKTLDLSFNELGQDISEILDIISACA-AFELESLFLRGCKIS--GQLTNQLGLFKNLHTLALSDNSVSGPLPPASGE 369 (790)
Q Consensus 293 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~--~~~~~~l~~l~~L~~L~L~~~~i~~~~~~~~~~ 369 (790)
++++++|.++++--. .... .+.. +++|+.|++++|.+. ..... .++.+..+.+..+.+ .+.+|.+
T Consensus 24 ~~~l~~L~l~g~i~~----~~~~--~l~~~l~~L~~LdLs~n~i~~~~~~~~---~~~~~~~~~~~~~~I---~~~aF~~ 91 (329)
T 3sb4_A 24 ANSITHLTLTGKLNA----EDFR--HLRDEFPSLKVLDISNAEIKMYSGKAG---TYPNGKFYIYMANFV---PAYAFSN 91 (329)
T ss_dssp HHHCSEEEEEEEECH----HHHH--HHHHSCTTCCEEEEEEEEECCEEESSS---SSGGGCCEEECTTEE---CTTTTEE
T ss_pred hCceeEEEEeccccH----HHHH--HHHHhhccCeEEecCcceeEEecCccc---ccccccccccccccc---CHHHhcc
Confidence 456777777654211 1011 2222 567777777777766 11111 112233344444322 2344555
Q ss_pred --------CCCCCEEECcCCcCCCcCChhhhccccccceeecCCCcceeecCCCCCCcccceEEEcCCCC----CCCCCC
Q 047929 370 --------LSSLTYLDLSNNNLNGMISEIHFGNLTELAFFYANGNSVNFKINSKWVPPFQLLALRLRSCH----LGPHFP 437 (790)
Q Consensus 370 --------l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~----~~~~~~ 437 (790)
+++|+.|++.+ .++.. +...|.++++|+.+.+..+.+.......|..+.++..+...... ......
T Consensus 92 ~~~~~~~g~~~L~~l~L~~-~i~~I-~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~ 169 (329)
T 3sb4_A 92 VVNGVTKGKQTLEKVILSE-KIKNI-EDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEH 169 (329)
T ss_dssp EETTEEEECTTCCC-CBCT-TCCEE-CTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTT
T ss_pred cccccccccCCCcEEECCc-cccch-hHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccc
Confidence 67777777766 54433 33356666677777666666655555566655555555544321 111122
Q ss_pred cccccCCCCC-EEEccCCccCCCcccccccccccccCCCccCCCCCCcEEEccCCcccccCCcCCCCCCCCCEEEccCCc
Q 047929 438 SWLHSQKHLS-KLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNR 516 (790)
Q Consensus 438 ~~~~~~~~L~-~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~ 516 (790)
..|..+..|+ .+.+..... +....+ .......+++.+.+.++-...........+++|+.+++++|+
T Consensus 170 ~~f~~~~~L~~~i~~~~~~~--l~~~~~----------~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~ 237 (329)
T 3sb4_A 170 FAFIEGEPLETTIQVGAMGK--LEDEIM----------KAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTN 237 (329)
T ss_dssp SCEEESCCCEEEEEECTTCC--HHHHHH----------HTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBC
T ss_pred cccccccccceeEEecCCCc--HHHHHh----------hcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCC
Confidence 2344455555 333332210 000000 000122344444444432111100001125677777777777
Q ss_pred ccccCCccccCCCCCcEEECcCCcccccCchhhhhcCCCCc-EEEcCCCcccccCCccccCCCCCcEEEccCCcccccCC
Q 047929 517 LSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLR-ILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVP 595 (790)
Q Consensus 517 i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~-~L~L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p 595 (790)
++.+....|.+|++|+.+++.+| +. .++...+..+++|+ .+++.+ .++.+.+.+|.+|++|+.+++++|.+...-+
T Consensus 238 i~~I~~~aF~~~~~L~~l~l~~n-i~-~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~ 314 (329)
T 3sb4_A 238 ATTIPDFTFAQKKYLLKIKLPHN-LK-TIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGD 314 (329)
T ss_dssp CCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECT
T ss_pred cceecHhhhhCCCCCCEEECCcc-cc-eehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccch
Confidence 77666667777777777777766 33 55655556677777 777766 5655666677777777777777777765555
Q ss_pred cchhccccccc
Q 047929 596 KCINNFTAMAT 606 (790)
Q Consensus 596 ~~l~~l~~L~~ 606 (790)
..|.++++|+.
T Consensus 315 ~aF~~~~~L~~ 325 (329)
T 3sb4_A 315 ELFGNGVPSKL 325 (329)
T ss_dssp TTTCTTCCCCE
T ss_pred hhhcCCcchhh
Confidence 56666666654
No 124
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.50 E-value=4.8e-14 Score=133.48 Aligned_cols=132 Identities=21% Similarity=0.280 Sum_probs=89.6
Q ss_pred cEEECcCCcccccCchhhhhcCCCCcEEEcCCCcccccCCc-cccCCCCCcEEEccCCcccccCCcchhccccccccCCc
Q 047929 532 VALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPI-QICHLSSLQILDVAYNRLSGSVPKCINNFTAMATIGSH 610 (790)
Q Consensus 532 ~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~-~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~~~ 610 (790)
+.+++++|.+. .+|..+. +++++|++++|++++..+. .+..+++|++|++++|.+++..|..+.++++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~------- 79 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASH------- 79 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTT-------
T ss_pred CEEEcCCCCcC-cCccCCC---CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCccc-------
Confidence 34555555553 4454332 3566666666666655443 3566667777777777766655555544443
Q ss_pred cccceeecccccccceeeeeeeeeccchhhhhhcccceeEEEccCccCCCCCCcccccCCCCCEEeCCCCcCCcCCCccc
Q 047929 611 HQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETI 690 (790)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l 690 (790)
|++|+|++|++.+..+..|..+++|++|++++|++++..|..|
T Consensus 80 -------------------------------------L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 122 (192)
T 1w8a_A 80 -------------------------------------IQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSF 122 (192)
T ss_dssp -------------------------------------CCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSS
T ss_pred -------------------------------------CCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHh
Confidence 3467777777776666667888888999999998888888888
Q ss_pred cCCCCCCEEeCcCccCccccC
Q 047929 691 GNMRSIESLDLSGNQISGKIP 711 (790)
Q Consensus 691 ~~l~~L~~L~l~~n~l~~~~p 711 (790)
..+++|++|++++|++.+..+
T Consensus 123 ~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 123 EHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp TTCTTCCEEECTTCCBCCSGG
T ss_pred hcCCCCCEEEeCCCCccCcCc
Confidence 888999999999998876543
No 125
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.49 E-value=2.7e-13 Score=128.17 Aligned_cols=129 Identities=28% Similarity=0.344 Sum_probs=98.6
Q ss_pred cEEEcCCCcccccCCccccCCCCCcEEEccCCcccccCCcchhccccccccCCccccceeecccccccceeeeeeeeecc
Q 047929 557 RILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKG 636 (790)
Q Consensus 557 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 636 (790)
+.++++++.++. +|..+ .++|+.|++++|.++ .+|..+.+++.
T Consensus 13 ~~l~~~~~~l~~-ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~--------------------------------- 55 (193)
T 2wfh_A 13 TVVRCSNKGLKV-LPKGI--PRDVTELYLDGNQFT-LVPKELSNYKH--------------------------------- 55 (193)
T ss_dssp TEEECTTSCCSS-CCSCC--CTTCCEEECCSSCCC-SCCGGGGGCTT---------------------------------
T ss_pred CEEEcCCCCCCc-CCCCC--CCCCCEEECCCCcCc-hhHHHhhcccC---------------------------------
Confidence 456666666663 34333 256777777777776 45544444333
Q ss_pred chhhhhhcccceeEEEccCccCCCCCCcccccCCCCCEEeCCCCcCCcCCCccccCCCCCCEEeCcCccCccccCccccC
Q 047929 637 FMVEYNSILNLVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSS 716 (790)
Q Consensus 637 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~ 716 (790)
|+.|+|++|.+++..+..|..+++|++|+|++|.++...|..|.++++|+.|++++|++....+..|..
T Consensus 56 -----------L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~ 124 (193)
T 2wfh_A 56 -----------LTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFND 124 (193)
T ss_dssp -----------CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTT
T ss_pred -----------CCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhc
Confidence 457888888887666777888999999999999999888888999999999999999999766777889
Q ss_pred CCCCCEEECcCCccccc
Q 047929 717 LSFLNHLNLSDNKLVGK 733 (790)
Q Consensus 717 l~~L~~L~l~~n~l~~~ 733 (790)
+++|+.|++++|++...
T Consensus 125 l~~L~~L~L~~N~~~C~ 141 (193)
T 2wfh_A 125 LSALSHLAIGANPLYCD 141 (193)
T ss_dssp CTTCCEEECCSSCEECS
T ss_pred CccccEEEeCCCCeecC
Confidence 99999999999998753
No 126
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.48 E-value=4.8e-14 Score=127.61 Aligned_cols=129 Identities=22% Similarity=0.251 Sum_probs=83.6
Q ss_pred CCCCcEEEcCCCccc-ccCCccccCCCCCcEEEccCCcccccCCcchhccccccccCCccccceeecccccccceeeeee
Q 047929 553 FSRLRILNLRSNKLH-GIFPIQICHLSSLQILDVAYNRLSGSVPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEIS 631 (790)
Q Consensus 553 ~~~L~~L~L~~n~~~-~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~ 631 (790)
.++|+.|++++|.++ +..|..+..+++|+.|++++|.+.+. ..+..
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~------------------------------- 62 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPK------------------------------- 62 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCC-------------------------------
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhc-------------------------------
Confidence 356777777777766 45566666777777777777766533 22222
Q ss_pred eeeccchhhhhhcccceeEEEccCccCCCCCCcccccCCCCCEEeCCCCcCCcC-CCccccCCCCCCEEeCcCccCcccc
Q 047929 632 LVMKGFMVEYNSILNLVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGK-IPETIGNMRSIESLDLSGNQISGKI 710 (790)
Q Consensus 632 ~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~l~~n~l~~~~ 710 (790)
++.|++|++++|.+.+.+|..+..+++|++|++++|.+++. .+..+..+++|++|++++|++.+..
T Consensus 63 -------------l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 129 (149)
T 2je0_A 63 -------------LNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLN 129 (149)
T ss_dssp -------------CTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGST
T ss_pred -------------CCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchH
Confidence 22345677777777655666666677777777777777643 2356777777777777777777554
Q ss_pred C---ccccCCCCCCEEECcC
Q 047929 711 P---QSMSSLSFLNHLNLSD 727 (790)
Q Consensus 711 p---~~l~~l~~L~~L~l~~ 727 (790)
+ ..+..+++|+.|++++
T Consensus 130 ~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 130 DYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp THHHHHHHHCTTCCEETTBC
T ss_pred HHHHHHHHHCCCcccccCCC
Confidence 4 4667777777777653
No 127
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.47 E-value=1.3e-13 Score=127.65 Aligned_cols=138 Identities=17% Similarity=0.200 Sum_probs=116.0
Q ss_pred CCCCCcEEEccCCccc-ccCCcchhccccccccCCccccceeecccccccceeeeeeeeeccchhhhhhcccceeEEEcc
Q 047929 576 HLSSLQILDVAYNRLS-GSVPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDIS 654 (790)
Q Consensus 576 ~l~~L~~L~ls~n~l~-~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~ 654 (790)
.+++|+.|++++|.+. +.+|..+..+++ |+.|+++
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~--------------------------------------------L~~L~l~ 57 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVN--------------------------------------------LEFLSLI 57 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGG--------------------------------------------CCEEEEE
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCC--------------------------------------------CCEEeCc
Confidence 4578999999999997 667766555444 5689999
Q ss_pred CccCCCCCCcccccCCCCCEEeCCCCcCCcCCCccccCCCCCCEEeCcCccCcccc-CccccCCCCCCEEECcCCccccc
Q 047929 655 MNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKI-PQSMSSLSFLNHLNLSDNKLVGK 733 (790)
Q Consensus 655 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~-p~~l~~l~~L~~L~l~~n~l~~~ 733 (790)
+|.+.+. ..+..+++|++|++++|.+++.+|..+..+++|++|++++|.+.+.. +..+..+++|+.|++++|++.+.
T Consensus 58 ~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~ 135 (168)
T 2ell_A 58 NVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNL 135 (168)
T ss_dssp SSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTS
T ss_pred CCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcch
Confidence 9999865 77899999999999999999878888888999999999999998643 27899999999999999999876
Q ss_pred CC----CCCcCCccCCccccCCcccCCCCC
Q 047929 734 IP----SSTQLQSFGASSITGNDLCGAPLS 759 (790)
Q Consensus 734 ~p----~~~~~~sl~~l~~~~n~l~~~~~~ 759 (790)
.+ ....+++|+.+++.+|.+...|..
T Consensus 136 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 165 (168)
T 2ell_A 136 NDYRESVFKLLPQLTYLDGYDREDQEAPDS 165 (168)
T ss_dssp TTHHHHHHTTCSSCCEETTEETTSCBCCSS
T ss_pred HHHHHHHHHhCccCcEecCCCCChhhcccc
Confidence 65 345688999999999877666643
No 128
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.47 E-value=1.2e-13 Score=143.47 Aligned_cols=206 Identities=12% Similarity=0.100 Sum_probs=116.6
Q ss_pred CCCCcEEEccCCcccccCCcCCCCCCCCCEEEccCCcccccCCccccCCCCCcEEECcCCccc---ccCchhhhhcCCCC
Q 047929 480 WPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFV---GNIPTWMGERFSRL 556 (790)
Q Consensus 480 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~---~~~~~~~~~~~~~L 556 (790)
+++|+.+++.+ .++...+..|..|++|+.+++.+|.+..+.+..|.++.++..+........ ..+....+..+..|
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L 178 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL 178 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence 88889998888 777677778888899999999988888888888888887777776653221 11222222244455
Q ss_pred c-EEEcCCCcc-cccCCccccCCCCCcEEEccCCcccccCCcchhccccccccCCccccceeecccccccceeeeeeeee
Q 047929 557 R-ILNLRSNKL-HGIFPIQICHLSSLQILDVAYNRLSGSVPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVM 634 (790)
Q Consensus 557 ~-~L~L~~n~~-~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 634 (790)
+ .+.+..... .......-....++..+.+.++-... .+..
T Consensus 179 ~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~----~~~~---------------------------------- 220 (329)
T 3sb4_A 179 ETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNA----DFKL---------------------------------- 220 (329)
T ss_dssp EEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHH----HHHH----------------------------------
T ss_pred ceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHH----HHHH----------------------------------
Confidence 5 444433211 10000001123344555554431110 0000
Q ss_pred ccchhhhhhcccceeEEEccCccCCCCCCcccccCCCCCEEeCCCCcCCcCCCccccCCCCCC-EEeCcCccCccccCcc
Q 047929 635 KGFMVEYNSILNLVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIE-SLDLSGNQISGKIPQS 713 (790)
Q Consensus 635 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~-~L~l~~n~l~~~~p~~ 713 (790)
....++.|+.++|++|++....+..|.++++|++|++.+| ++...+.+|.++++|+ .+++.+ .+....+.+
T Consensus 221 ------l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~a 292 (329)
T 3sb4_A 221 ------IRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGA 292 (329)
T ss_dssp ------HHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTT
T ss_pred ------HHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhh
Confidence 0011234556666666666444445666666666666665 5545556666666666 666666 555455566
Q ss_pred ccCCCCCCEEECcCCcccc
Q 047929 714 MSSLSFLNHLNLSDNKLVG 732 (790)
Q Consensus 714 l~~l~~L~~L~l~~n~l~~ 732 (790)
|..+++|+.+++++|.+..
T Consensus 293 F~~c~~L~~l~l~~n~i~~ 311 (329)
T 3sb4_A 293 FMGCDNLRYVLATGDKITT 311 (329)
T ss_dssp TTTCTTEEEEEECSSCCCE
T ss_pred hhCCccCCEEEeCCCccCc
Confidence 6666666666666666553
No 129
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.46 E-value=4.4e-13 Score=125.21 Aligned_cols=89 Identities=18% Similarity=0.187 Sum_probs=70.7
Q ss_pred eeEEEccCccCCCCCCcccccCCCCCEEeCCCCcCCcCCCccccCCCCCCEEeCcCccCccccCccccCCCCCCEEECcC
Q 047929 648 VRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLSFLNHLNLSD 727 (790)
Q Consensus 648 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~ 727 (790)
|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++.+..+..+..+++|++|++++
T Consensus 54 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 133 (177)
T 2o6r_A 54 LTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHT 133 (177)
T ss_dssp CSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred ccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecC
Confidence 34666666766655555667888899999999998877777788889999999999999876666678889999999999
Q ss_pred CcccccCCC
Q 047929 728 NKLVGKIPS 736 (790)
Q Consensus 728 n~l~~~~p~ 736 (790)
|++.+..|.
T Consensus 134 N~~~~~~~~ 142 (177)
T 2o6r_A 134 NPWDCSCPR 142 (177)
T ss_dssp SCBCCCHHH
T ss_pred CCeeccCcc
Confidence 998876663
No 130
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.43 E-value=5.2e-12 Score=133.62 Aligned_cols=201 Identities=13% Similarity=0.129 Sum_probs=112.2
Q ss_pred ccCCCCCCcEEEccCCcccccCCcCCCCCCCCCEEEccCCcccccCCccccCCCCCcEEECcCCcccccCchhhhhcCCC
Q 047929 476 CWMNWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSR 555 (790)
Q Consensus 476 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~ 555 (790)
.|..+++|+.+++.+|.++......|. +.+|+.+.+.++ +..+....|.+|++|+.+++.++ +. .++...+.. .+
T Consensus 175 aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~-~I~~~aF~~-~~ 249 (401)
T 4fdw_A 175 IFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VS-TIGQEAFRE-SG 249 (401)
T ss_dssp TTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CC-EECTTTTTT-CC
T ss_pred HhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-cc-Ccccccccc-CC
Confidence 455667777777777766655555555 467777777643 66666677777777777777764 32 444444434 66
Q ss_pred CcEEEcCCCcccccCCccccCCCCCcEEEccCCccc-----ccCCcchhccccccccCCccccceeecccccccceeeee
Q 047929 556 LRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLS-----GSVPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEI 630 (790)
Q Consensus 556 L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~-----~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~ 630 (790)
|+.+.+. +.++.+...+|.++++|+.+++.++.+. ...+.+|.++++
T Consensus 250 L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~--------------------------- 301 (401)
T 4fdw_A 250 ITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPK--------------------------- 301 (401)
T ss_dssp CSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTT---------------------------
T ss_pred ccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCcc---------------------------
Confidence 7777773 3455555667777777877777766543 111122222222
Q ss_pred eeeeccchhhhhhcccceeEEEccCccCCCCCCcccccCCCCCEEeCCCCcCCcCCCccccCCCCCCEEeCcCccCcccc
Q 047929 631 SLVMKGFMVEYNSILNLVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKI 710 (790)
Q Consensus 631 ~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~ 710 (790)
|+.++|. +.+...-...|.++++|+.+.|..+ ++...+.+|.++ +|+.+++++|.+....
T Consensus 302 -----------------L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~ 361 (401)
T 4fdw_A 302 -----------------LARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVF 361 (401)
T ss_dssp -----------------CCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCC
T ss_pred -----------------CCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccc
Confidence 2334443 2233222344555555666655433 443444555555 5666666666555444
Q ss_pred CccccCCC-CCCEEECcCCc
Q 047929 711 PQSMSSLS-FLNHLNLSDNK 729 (790)
Q Consensus 711 p~~l~~l~-~L~~L~l~~n~ 729 (790)
+..|..++ .++.|.+..+.
T Consensus 362 ~~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 362 EKVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp CSSCCCSCTTCCEEEECGGG
T ss_pred cccccCCCCCccEEEeCHHH
Confidence 45555543 45555555444
No 131
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.41 E-value=2e-11 Score=129.15 Aligned_cols=223 Identities=12% Similarity=0.120 Sum_probs=136.0
Q ss_pred CCCEEEccCccccccCcccCcCCCCCCEEECCCCCCCCCCcchhccCCCCCcEEEccCCcCCCCCCccCCCCCCCcEEeC
Q 047929 173 SLKVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDL 252 (790)
Q Consensus 173 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l 252 (790)
+|+.+.+.. .+..+...+|.++++|+.+++.++.+ ..++.......+|+.+.+..+ +......+|.++++|+.+++
T Consensus 158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l--~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l 233 (401)
T 4fdw_A 158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKI--TKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEI 233 (401)
T ss_dssp CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCC--SEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEEC
T ss_pred CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcc--eEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEec
Confidence 466666654 56666667777777777777777666 345555555677777777644 55455567777777777777
Q ss_pred CCCcCCccccccccCCCCCCEEEccCcccccccCcccccCCCCCCEEEccCCCCCCCcchhhhhhhccccCCCCEEEccC
Q 047929 253 SYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQDISEILDIISACAAFELESLFLRG 332 (790)
Q Consensus 253 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 332 (790)
..+ +..+...+|.. .+|+.+.+.+ .+. .++..+|.++++|+.+.+.++.+............+..+++|+.+.+.+
T Consensus 234 ~~~-l~~I~~~aF~~-~~L~~i~lp~-~i~-~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~ 309 (401)
T 4fdw_A 234 PEN-VSTIGQEAFRE-SGITTVKLPN-GVT-NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE 309 (401)
T ss_dssp CTT-CCEECTTTTTT-CCCSEEEEET-TCC-EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT
T ss_pred CCC-ccCcccccccc-CCccEEEeCC-Ccc-EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC
Confidence 653 55555566666 6777777743 333 4555557777778887777765531110000011445566777777763
Q ss_pred CccccccchhhccCCCCcEEEccCcccCCCCCcCcCCCCCCCEEECcCCcCCCcCChhhhcccc-ccceeecCCCc
Q 047929 333 CKISGQLTNQLGLFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNLT-ELAFFYANGNS 407 (790)
Q Consensus 333 ~~~~~~~~~~l~~l~~L~~L~L~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~-~L~~l~l~~~~ 407 (790)
.+......+|.++.+|+.+.+..+ +......+|.++ +|+.+++.+|........ .|.+++ .+..+++..+.
T Consensus 310 -~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~-~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 310 -SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEK-VWYGFPDDITVIRVPAES 381 (401)
T ss_dssp -TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCS-SCCCSCTTCCEEEECGGG
T ss_pred -ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccc-cccCCCCCccEEEeCHHH
Confidence 355455566777777777777543 544555667777 777777777765543333 344443 45556555443
No 132
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.41 E-value=2.3e-11 Score=129.48 Aligned_cols=331 Identities=14% Similarity=0.102 Sum_probs=201.4
Q ss_pred CCCccCCCCCCCcEEeCCCCcCCccccccccCCCCCCEEEccCcccccccCcccccCCCCCCEEEccCCCCCCCcchhhh
Q 047929 236 PIPDGFKNLTSLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELGQDISEILD 315 (790)
Q Consensus 236 ~~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 315 (790)
.-..+|.++.+|+.+.+.. .++.+...+|.++.+|+.+++..+ ++ .+...++..+++|+.+.+..+ +......
T Consensus 62 Ig~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~c~~L~~i~~p~~-l~~i~~~--- 134 (394)
T 4fs7_A 62 IGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VK-MIGRCTFSGCYALKSILLPLM-LKSIGVE--- 134 (394)
T ss_dssp ECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCCCCCCTT-CCEECTT---
T ss_pred hHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ce-EccchhhcccccchhhcccCc-eeeecce---
Confidence 3344566666666666643 244445556666666666666543 22 344444666666665544432 1111111
Q ss_pred hhhccccCCCCEEEccCCccccccchhhccCCCCcEEEccCcccCCCCCcCcCCCCCCCEEECcCCcCCCcCChhhhccc
Q 047929 316 IISACAAFELESLFLRGCKISGQLTNQLGLFKNLHTLALSDNSVSGPLPPASGELSSLTYLDLSNNNLNGMISEIHFGNL 395 (790)
Q Consensus 316 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l 395 (790)
.+... .+....+... .......+|..+++|+.+.+..+. ......+|..+.+|+.+++..+ +. .+....|.++
T Consensus 135 --aF~~~-~~~~~~~~~~-~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~-~I~~~~F~~~ 207 (394)
T 4fs7_A 135 --AFKGC-DFKEITIPEG-VTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LK-IIRDYCFAEC 207 (394)
T ss_dssp --TTTTC-CCSEEECCTT-CCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CC-EECTTTTTTC
T ss_pred --eeecc-cccccccCcc-ccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ce-EeCchhhccc
Confidence 11111 1222222221 111234457777888888886543 2244556777888888877665 22 2334467777
Q ss_pred cccceeecCCCcceeecCCCCCCcccceEEEcCCCCCCCCCCcccccCCCCCEEEccCCccCCCcccccccccccccCCC
Q 047929 396 TELAFFYANGNSVNFKINSKWVPPFQLLALRLRSCHLGPHFPSWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPD 475 (790)
Q Consensus 396 ~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~ 475 (790)
..|+.+.+..+... .........+++.+.+... ........+..+..++.+.+..+... + ...
T Consensus 208 ~~L~~i~~~~~~~~--i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-i-------------~~~ 270 (394)
T 4fs7_A 208 ILLENMEFPNSLYY--LGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR-I-------------GGS 270 (394)
T ss_dssp TTCCBCCCCTTCCE--ECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE-E-------------CSC
T ss_pred cccceeecCCCceE--eehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcce-e-------------ecc
Confidence 77777776655332 2233444567777777543 22233445778888888888765421 1 123
Q ss_pred ccCCCCCCcEEEccCCcccccCCcCCCCCCCCCEEEccCCcccccCCccccCCCCCcEEECcCCcccccCchhhhhcCCC
Q 047929 476 CWMNWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSR 555 (790)
Q Consensus 476 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~ 555 (790)
.+..+..++.+......+ ....|..+.+|+.+.+.++ +..+....|.+|++|+.+++.++ +. .+....+.++.+
T Consensus 271 ~F~~~~~l~~~~~~~~~i---~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~c~~ 344 (394)
T 4fs7_A 271 LFYNCSGLKKVIYGSVIV---PEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VE-EIGKRSFRGCTS 344 (394)
T ss_dssp TTTTCTTCCEEEECSSEE---CTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTT
T ss_pred ccccccccceeccCceee---ccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-cc-EEhHHhccCCCC
Confidence 456777888887776543 3346778899999998765 66677788999999999999754 43 566666678899
Q ss_pred CcEEEcCCCcccccCCccccCCCCCcEEEccCCcccccCCcchhccccccc
Q 047929 556 LRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCINNFTAMAT 606 (790)
Q Consensus 556 L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~ 606 (790)
|+.+.+..+ ++.+...+|.+|++|+.+++..+- . .+...+.++++|+.
T Consensus 345 L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~~-~-~~~~~F~~c~~L~~ 392 (394)
T 4fs7_A 345 LSNINFPLS-LRKIGANAFQGCINLKKVELPKRL-E-QYRYDFEDTTKFKW 392 (394)
T ss_dssp CCEECCCTT-CCEECTTTBTTCTTCCEEEEEGGG-G-GGGGGBCTTCEEEE
T ss_pred CCEEEECcc-ccEehHHHhhCCCCCCEEEECCCC-E-EhhheecCCCCCcE
Confidence 999999776 666777789999999999997652 2 23456667766654
No 133
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.40 E-value=1e-12 Score=118.85 Aligned_cols=124 Identities=19% Similarity=0.286 Sum_probs=76.2
Q ss_pred CCCcEEEccCCccc-ccCCcCCCCCCCCCEEEccCCcccccCCccccCCCCCcEEECcCCcccccCchhhhhcCCCCcEE
Q 047929 481 PDLRVLNLGNNKFT-GSIPISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRIL 559 (790)
Q Consensus 481 ~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L 559 (790)
++|+.|++++|.++ +.+|..+..+++|+.|++++|.+++. ..+..+++|++|++++|.+.+.+|..+ ..+++|++|
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~~l~~L~~L 93 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLA-EKCPNLTHL 93 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHH-HHCTTCCEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHh-hhCCCCCEE
Confidence 45666666666665 45555566666666666666666654 456666667777777766665455443 246667777
Q ss_pred EcCCCccccc-CCccccCCCCCcEEEccCCcccccCC---cchhcccccccc
Q 047929 560 NLRSNKLHGI-FPIQICHLSSLQILDVAYNRLSGSVP---KCINNFTAMATI 607 (790)
Q Consensus 560 ~L~~n~~~~~-~~~~~~~l~~L~~L~ls~n~l~~~~p---~~l~~l~~L~~l 607 (790)
++++|++++. .+..+..+++|++|++++|.+++..+ ..+..+++|+.+
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L 145 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYL 145 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEE
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccc
Confidence 7777766643 23556666777777777776665444 345555555543
No 134
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.39 E-value=2.6e-12 Score=119.95 Aligned_cols=133 Identities=21% Similarity=0.252 Sum_probs=107.6
Q ss_pred CCEEEccCCccCCCcccccccccccccCCCccCCCCCCcEEEccCCcccccCCcCCCCCCCCCEEEccCCcccccCCccc
Q 047929 446 LSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLSGIIPVPF 525 (790)
Q Consensus 446 L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l 525 (790)
.+.++++++.+..++. . ..++|+.|++++|.+++..+..|..+++|++|++++|+++.+.+..|
T Consensus 9 ~~~l~~~~~~l~~~p~--------------~--~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 72 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPT--------------G--IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVF 72 (177)
T ss_dssp TTEEECCSSCCSSCCT--------------T--CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTT
T ss_pred CCEEEecCCCCccCCC--------------C--CCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHc
Confidence 5677888777765422 1 23688999999999987666677889999999999999998877788
Q ss_pred cCCCCCcEEECcCCcccccCchhhhhcCCCCcEEEcCCCcccccCCccccCCCCCcEEEccCCcccccCC
Q 047929 526 ENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVP 595 (790)
Q Consensus 526 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p 595 (790)
..+++|+.|++++|.+. .++...+..+++|++|++++|++++..+..+..+++|+.|++++|++.+..|
T Consensus 73 ~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 73 DKLTKLTILYLHENKLQ-SLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp TTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred cCCCccCEEECCCCCcc-ccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 89999999999999988 4454444578999999999999987766667889999999999999886544
No 135
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.39 E-value=1.4e-11 Score=131.15 Aligned_cols=123 Identities=14% Similarity=0.152 Sum_probs=78.0
Q ss_pred ccccCCCCCEEEccCCccCCCcccccccccccccCCCccCCCCCCcEEEccCCcccccCCcCCCCCCCCCEEEccCCccc
Q 047929 439 WLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLS 518 (790)
Q Consensus 439 ~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~ 518 (790)
.|..+..++.+......+.+ ..+..+.+|+.+.+.++ ++......|..+.+|+.+++.++ ++
T Consensus 271 ~F~~~~~l~~~~~~~~~i~~----------------~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~ 332 (394)
T 4fs7_A 271 LFYNCSGLKKVIYGSVIVPE----------------KTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VE 332 (394)
T ss_dssp TTTTCTTCCEEEECSSEECT----------------TTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CC
T ss_pred ccccccccceeccCceeecc----------------ccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-cc
Confidence 35556666666655443221 23456677777777654 44455566777788888877643 66
Q ss_pred ccCCccccCCCCCcEEECcCCcccccCchhhhhcCCCCcEEEcCCCcccccCCccccCCCCCcEE
Q 047929 519 GIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQIL 583 (790)
Q Consensus 519 ~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L 583 (790)
.+...+|.+|.+|+.+++..+ +. .+....+..+++|+.+++..+ ++ ....+|.++++|+.+
T Consensus 333 ~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 333 EIGKRSFRGCTSLSNINFPLS-LR-KIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp EECTTTTTTCTTCCEECCCTT-CC-EECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred EEhHHhccCCCCCCEEEECcc-cc-EehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence 666777888888888888765 33 555556667788888887654 22 223467777777765
No 136
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.38 E-value=4.2e-12 Score=119.96 Aligned_cols=127 Identities=25% Similarity=0.330 Sum_probs=93.7
Q ss_pred CEEEccCccccccCcccCcCCCCCCEEECCCCCCCCCCcchhccCCCCCcEEEccCCcCCCCCCccCCCCCCCcEEeCCC
Q 047929 175 KVLKLFSCKLHHFAPLASANFSSLNALDLSGNLFGKTSIPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSY 254 (790)
Q Consensus 175 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~ 254 (790)
++++++++.+..++.... ++|++|++++|.+. .+|..+..+++|++|++++|.+.+..+..|..+++|++|++++
T Consensus 13 ~~l~~~~~~l~~ip~~~~---~~l~~L~L~~n~i~--~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP---RDVTELYLDGNQFT--LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TEEECTTSCCSSCCSCCC---TTCCEEECCSSCCC--SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCCCcCCCCCC---CCCCEEECCCCcCc--hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence 456666777666654322 57788888888774 5677777788888888888888877777788888888888888
Q ss_pred CcCCccccccccCCCCCCEEEccCcccccccCcccccCCCCCCEEEccCCCCC
Q 047929 255 NQFNSTISDCFSNFDDLEYLSLGYNRLQGTISSIGLENLTFIKTLDLSFNELG 307 (790)
Q Consensus 255 ~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~ 307 (790)
|.+....+..|..+++|+.|++++|.+. .++...+..+++|+.|++++|.+.
T Consensus 88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 88 NRLRCIPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECCSSCCC-BCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CccCEeCHHHhCCCCCCCEEECCCCCCC-eeChhhhhcCccccEEEeCCCCee
Confidence 8888777777888888888888888877 444444677777777777777654
No 137
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.34 E-value=1.7e-12 Score=121.06 Aligned_cols=63 Identities=19% Similarity=0.335 Sum_probs=36.8
Q ss_pred ccCCCCCEEeCCCCcCCcCCCc--cccCCCCCCEEeCcCccCccccCcc----ccCCCCCCEEECcCCccc
Q 047929 667 TNLKGLQSLNLSHNSFIGKIPE--TIGNMRSIESLDLSGNQISGKIPQS----MSSLSFLNHLNLSDNKLV 731 (790)
Q Consensus 667 ~~l~~L~~L~L~~n~l~~~~p~--~l~~l~~L~~L~l~~n~l~~~~p~~----l~~l~~L~~L~l~~n~l~ 731 (790)
..+++|++|++++|.+. .+|. .+..+++|+.|++++|++. ..|.. +..+++|+.|++++|...
T Consensus 85 ~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 85 QALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp HHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred hcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 55556666666666654 3333 5556666666666666665 33442 566666666666666554
No 138
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.32 E-value=3.3e-12 Score=119.01 Aligned_cols=134 Identities=16% Similarity=0.216 Sum_probs=92.3
Q ss_pred ccCCCCCcEEECcCCcccccCchhhhhcCCCCcEEEcCCCcccccCCccccCCCCCcEEEccCCcccccCCcchhccccc
Q 047929 525 FENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCINNFTAM 604 (790)
Q Consensus 525 l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L 604 (790)
+..+++|+.|++++|.+. .++. +....++|++|++++|.+++. ..+..+++|+.|++++|.+++..+..+..++
T Consensus 15 ~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-- 88 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALP-- 88 (176)
T ss_dssp EECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCT--
T ss_pred cCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCC--
Confidence 344556666666666655 3333 222344777777777777754 4677778888888888887744333334433
Q ss_pred cccCCccccceeecccccccceeeeeeeeeccchhhhhhcccceeEEEccCccCCCCCCc--ccccCCCCCEEeCCCCcC
Q 047929 605 ATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGEIPM--EVTNLKGLQSLNLSHNSF 682 (790)
Q Consensus 605 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~--~~~~l~~L~~L~L~~n~l 682 (790)
.|++|++++|.+. .+|. .+..+++|++|++++|++
T Consensus 89 ------------------------------------------~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i 125 (176)
T 1a9n_A 89 ------------------------------------------DLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPV 125 (176)
T ss_dssp ------------------------------------------TCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGG
T ss_pred ------------------------------------------CCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCC
Confidence 3457888888886 4555 678889999999999998
Q ss_pred CcCCCcc----ccCCCCCCEEeCcCccCcc
Q 047929 683 IGKIPET----IGNMRSIESLDLSGNQISG 708 (790)
Q Consensus 683 ~~~~p~~----l~~l~~L~~L~l~~n~l~~ 708 (790)
+ ..|.. +..+++|+.||+++|....
T Consensus 126 ~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 126 T-NKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp G-GSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred C-CcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 7 45553 7888999999999998764
No 139
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.30 E-value=4.9e-14 Score=134.35 Aligned_cols=128 Identities=18% Similarity=0.301 Sum_probs=71.2
Q ss_pred cCCCCcEEEcCCCcccccCCccccCCCCCcEEEccCCcccccCCcchhccccccccCCccccceeecccccccceeeeee
Q 047929 552 RFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRLSGSVPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEIS 631 (790)
Q Consensus 552 ~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~ 631 (790)
.+++|++|++++|++++ +| .+..+++|+.|++++|.+. .+|..+..+
T Consensus 46 ~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~------------------------------ 92 (198)
T 1ds9_A 46 TLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVA------------------------------ 92 (198)
T ss_dssp HTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHH------------------------------
T ss_pred cCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcC------------------------------
Confidence 56666666666666664 34 5566666666666666665 334332222
Q ss_pred eeeccchhhhhhcccceeEEEccCccCCCCCCcccccCCCCCEEeCCCCcCCcCCC-ccccCCCCCCEEeCcCccCcccc
Q 047929 632 LVMKGFMVEYNSILNLVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIP-ETIGNMRSIESLDLSGNQISGKI 710 (790)
Q Consensus 632 ~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~l~~n~l~~~~ 710 (790)
+.|+.|++++|.+.+ +| .+..+++|++|++++|.+++..+ ..+..+++|++|++++|++.+..
T Consensus 93 --------------~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~ 156 (198)
T 1ds9_A 93 --------------DTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDY 156 (198)
T ss_dssp --------------HHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHH
T ss_pred --------------CcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccccc
Confidence 234466666666653 33 35556666666666666653221 24556666666666666665444
Q ss_pred Ccc----------ccCCCCCCEEECcCCcc
Q 047929 711 PQS----------MSSLSFLNHLNLSDNKL 730 (790)
Q Consensus 711 p~~----------l~~l~~L~~L~l~~n~l 730 (790)
|.. +..+++|+.|+ +|++
T Consensus 157 ~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i 184 (198)
T 1ds9_A 157 KENNATSEYRIEVVKRLPNLKKLD--GMPV 184 (198)
T ss_dssp HTTTTHHHHHHHHHHHCSSCSEEC--CGGG
T ss_pred ccccchHHHHHHHHHhCCCcEEEC--Cccc
Confidence 432 55566666654 4444
No 140
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.29 E-value=1.2e-11 Score=114.26 Aligned_cols=90 Identities=18% Similarity=0.196 Sum_probs=80.9
Q ss_pred ceeEEEccCccCCCCCCcccccCCCCCEEeCCCCcCCcCCCccccCCCCCCEEeCcCccCccccCccccCCCCCCEEECc
Q 047929 647 LVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLSFLNHLNLS 726 (790)
Q Consensus 647 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~ 726 (790)
.++.|+|++|.+.+..|..|..+++|++|+|++|.+++..+..|..+++|++|++++|++.+..+..|..+++|++|+++
T Consensus 31 ~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 110 (170)
T 3g39_A 31 TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLL 110 (170)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeC
Confidence 45789999999998888889999999999999999997777788999999999999999998777789999999999999
Q ss_pred CCcccccCCC
Q 047929 727 DNKLVGKIPS 736 (790)
Q Consensus 727 ~n~l~~~~p~ 736 (790)
+|++....+.
T Consensus 111 ~N~~~c~c~~ 120 (170)
T 3g39_A 111 NNPWDCACSD 120 (170)
T ss_dssp SSCBCTTBGG
T ss_pred CCCCCCCchh
Confidence 9999876653
No 141
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.27 E-value=4.7e-14 Score=134.46 Aligned_cols=152 Identities=18% Similarity=0.248 Sum_probs=120.2
Q ss_pred cCCCCcEEEcCCCcccccCCc------cccCCCCCcEEEccCCcccccCCcchhccccccccCCccccceeecccccccc
Q 047929 552 RFSRLRILNLRSNKLHGIFPI------QICHLSSLQILDVAYNRLSGSVPKCINNFTAMATIGSHHQVKAIYHASFENDY 625 (790)
Q Consensus 552 ~~~~L~~L~L~~n~~~~~~~~------~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~ 625 (790)
..+.++.++++.+.+.+..|. .+..+++|++|++++|.+.+ +| .+.+++
T Consensus 16 ~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~----------------------- 70 (198)
T 1ds9_A 16 ERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGME----------------------- 70 (198)
T ss_dssp HTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHT-----------------------
T ss_pred hcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCC-----------------------
Confidence 456667777777777666555 78899999999999999885 55 555444
Q ss_pred eeeeeeeeeccchhhhhhcccceeEEEccCccCCCCCCcccccCCCCCEEeCCCCcCCcCCCccccCCCCCCEEeCcCcc
Q 047929 626 IVEEISLVMKGFMVEYNSILNLVRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQ 705 (790)
Q Consensus 626 ~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~ 705 (790)
.|+.|++++|.+. .+|..+..+++|++|++++|.+++ +| .+..+++|++|++++|+
T Consensus 71 ---------------------~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~ 126 (198)
T 1ds9_A 71 ---------------------NLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNK 126 (198)
T ss_dssp ---------------------TCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEE
T ss_pred ---------------------CCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCc
Confidence 3568999999998 678878888999999999999985 45 68889999999999999
Q ss_pred CccccC-ccccCCCCCCEEECcCCcccccCCCC-----------CcCCccCCccccCCccc
Q 047929 706 ISGKIP-QSMSSLSFLNHLNLSDNKLVGKIPSS-----------TQLQSFGASSITGNDLC 754 (790)
Q Consensus 706 l~~~~p-~~l~~l~~L~~L~l~~n~l~~~~p~~-----------~~~~sl~~l~~~~n~l~ 754 (790)
+....+ ..+..+++|++|++++|++.+.+|.. ..+++|+.++ +|.++
T Consensus 127 i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 127 ITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp CCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred CCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 985433 47889999999999999999887762 3355666554 54554
No 142
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.22 E-value=5.3e-11 Score=110.11 Aligned_cols=88 Identities=18% Similarity=0.226 Sum_probs=72.3
Q ss_pred eeEEEccCccCCCCCCcccccCCCCCEEeCCCCcCCcCCCccccCCCCCCEEeCcCccCccccCccccCCCCCCEEECcC
Q 047929 648 VRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLSFLNHLNLSD 727 (790)
Q Consensus 648 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~ 727 (790)
++.|+|++|.+.+..|..|..+++|++|+|++|++++..+..|..+++|++|++++|++.+..+..|..+++|+.|++++
T Consensus 35 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~ 114 (174)
T 2r9u_A 35 KQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYN 114 (174)
T ss_dssp CSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCS
T ss_pred CcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCC
Confidence 46788888888777777888888999999999998876666678889999999999999876666688899999999999
Q ss_pred CcccccCC
Q 047929 728 NKLVGKIP 735 (790)
Q Consensus 728 n~l~~~~p 735 (790)
|++....+
T Consensus 115 N~~~c~~~ 122 (174)
T 2r9u_A 115 NPWDCECR 122 (174)
T ss_dssp SCBCTTBG
T ss_pred CCcccccc
Confidence 98876544
No 143
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.21 E-value=5.7e-11 Score=109.58 Aligned_cols=104 Identities=22% Similarity=0.269 Sum_probs=92.0
Q ss_pred eeEEEccCccCCCCCCcccccCCCCCEEeCCCCcCCcCCCccccCCCCCCEEeCcCccCccccCccccCCCCCCEEECcC
Q 047929 648 VRSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLSFLNHLNLSD 727 (790)
Q Consensus 648 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~ 727 (790)
.+.+++++|.+. .+|..+ .++|++|+|++|.+++..|..|..+++|++|++++|++.+..+..|..+++|++|++++
T Consensus 11 ~~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 358999999998 577666 38999999999999988899999999999999999999988788889999999999999
Q ss_pred CcccccCCCC-CcCCccCCccccCCccc
Q 047929 728 NKLVGKIPSS-TQLQSFGASSITGNDLC 754 (790)
Q Consensus 728 n~l~~~~p~~-~~~~sl~~l~~~~n~l~ 754 (790)
|++.+..|.. ..+.+|+.+++.+|++.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 9999766653 56889999999999664
No 144
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.20 E-value=6.6e-11 Score=109.49 Aligned_cols=103 Identities=17% Similarity=0.239 Sum_probs=91.0
Q ss_pred eEEEccCccCCCCCCcccccCCCCCEEeCCCCcCCcCCCccccCCCCCCEEeCcCccCccccCccccCCCCCCEEECcCC
Q 047929 649 RSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLSFLNHLNLSDN 728 (790)
Q Consensus 649 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n 728 (790)
+.+++++|.+. .+|..+. ++|++|++++|.+++..|..|..+++|++|++++|++.+..+..|..+++|++|++++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 57999999997 6777664 89999999999999888999999999999999999999877777899999999999999
Q ss_pred cccccCCC-CCcCCccCCccccCCccc
Q 047929 729 KLVGKIPS-STQLQSFGASSITGNDLC 754 (790)
Q Consensus 729 ~l~~~~p~-~~~~~sl~~l~~~~n~l~ 754 (790)
++.+.+|. ...+.+|+.+++.+|++.
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcc
Confidence 99976665 356889999999999664
No 145
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.18 E-value=1.1e-12 Score=137.45 Aligned_cols=187 Identities=18% Similarity=0.128 Sum_probs=100.0
Q ss_pred CCCCEEEccCCcccccCCcccc-----CCCCCcEEECcCCcccccCchhhhhcCCCCcEEEcCCCcccccCCccc-----
Q 047929 505 TSLRSLNLRSNRLSGIIPVPFE-----NCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQI----- 574 (790)
Q Consensus 505 ~~L~~L~L~~n~i~~~~~~~l~-----~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~----- 574 (790)
++|+.|++++|.++......+. ..++|+.|++++|.+.+.....+...+++|++|++++|.+++.....+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 4566666666666543322222 225677777777766544444444455667777777777654332222
Q ss_pred cCCCCCcEEEccCCcccccCCcchhccccccccCCccccceeecccccccceeeeeeeeeccchhhhhhcccceeEEEcc
Q 047929 575 CHLSSLQILDVAYNRLSGSVPKCINNFTAMATIGSHHQVKAIYHASFENDYIVEEISLVMKGFMVEYNSILNLVRSIDIS 654 (790)
Q Consensus 575 ~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~ 654 (790)
...++|++|++++|.++......+. ......+.|++|+|+
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~----------------------------------------~~L~~~~~L~~L~Ls 191 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLM----------------------------------------EGLAGNTSVTHLSLL 191 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHH----------------------------------------HHHHTCSSCCEEECT
T ss_pred hcCCccceeeCCCCCCChHHHHHHH----------------------------------------HHHhcCCCcCEEeCC
Confidence 2356777777777776532111110 000112345567777
Q ss_pred CccCCC----CCCcccccCCCCCEEeCCCCcCCcC----CCccccCCCCCCEEeCcCccCccccCccccCCC-----CCC
Q 047929 655 MNNFSG----EIPMEVTNLKGLQSLNLSHNSFIGK----IPETIGNMRSIESLDLSGNQISGKIPQSMSSLS-----FLN 721 (790)
Q Consensus 655 ~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~-----~L~ 721 (790)
+|.+.+ .++..+...++|++|+|++|.+++. ++.++...++|++|++++|.+.......+..+. .|+
T Consensus 192 ~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~ 271 (372)
T 3un9_A 192 HTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGAR 271 (372)
T ss_dssp TSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CE
T ss_pred CCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccch
Confidence 776653 1234455667788888888877643 233444557788888888887654443343321 155
Q ss_pred EEE--CcCCccc
Q 047929 722 HLN--LSDNKLV 731 (790)
Q Consensus 722 ~L~--l~~n~l~ 731 (790)
.+. +.+|.+.
T Consensus 272 ~l~~ll~~~~~~ 283 (372)
T 3un9_A 272 VVVSLTEGTAVS 283 (372)
T ss_dssp EECCCC----CH
T ss_pred hhHhhhcCCccC
Confidence 555 5555554
No 146
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.12 E-value=1.3e-08 Score=108.03 Aligned_cols=131 Identities=20% Similarity=0.279 Sum_probs=77.5
Q ss_pred ccccCCCCCEEEccCCccCCCcccccccccccccCCCccCCCCCCcEEEccCCcccccCCcCCCCCCCCCEEEccCCccc
Q 047929 439 WLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRLS 518 (790)
Q Consensus 439 ~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~ 518 (790)
+|.+|..|+.+.+.++.. .+ -...|..+++|+.+.+.. .++......|..|.+|+.+.+..+ ++
T Consensus 260 aF~~c~~L~~i~lp~~~~-~I-------------~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~ 323 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDSVV-SI-------------GTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-IT 323 (394)
T ss_dssp TTTTCSSCCEEECCTTCC-EE-------------CTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CC
T ss_pred eeeecccccEEecccccc-ee-------------cCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-cc
Confidence 466667777777654321 11 123456667777777753 344455566777888888888653 66
Q ss_pred ccCCccccCCCCCcEEECcCCcccccCchhhhhcCCCCcEEEcCCCcccccCCccccCCCCCcEEEccCCcc
Q 047929 519 GIIPVPFENCSQLVALDMGENEFVGNIPTWMGERFSRLRILNLRSNKLHGIFPIQICHLSSLQILDVAYNRL 590 (790)
Q Consensus 519 ~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l 590 (790)
.+....|.+|.+|+.+.+..+ +. .+....+.++++|+.+++.++.... ..+..+.+|+.+.+..+.+
T Consensus 324 ~I~~~aF~~C~~L~~i~ip~s-v~-~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 324 QILDDAFAGCEQLERIAIPSS-VT-KIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp EECTTTTTTCTTCCEEEECTT-CC-BCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC----------
T ss_pred EehHhHhhCCCCCCEEEECcc-cC-EEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence 666777888888888888654 33 5666666677888888887765431 2455667777777765543
No 147
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.10 E-value=9.3e-09 Score=109.27 Aligned_cols=65 Identities=14% Similarity=0.143 Sum_probs=40.5
Q ss_pred CCCccCCCCC-CCcEEeCCCCcCCccccccccCCCCCCEEEccCcc---cccccCcccccCCCCCCEEEcc
Q 047929 236 PIPDGFKNLT-SLRYLDLSYNQFNSTISDCFSNFDDLEYLSLGYNR---LQGTISSIGLENLTFIKTLDLS 302 (790)
Q Consensus 236 ~~p~~~~~l~-~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~---l~~~~~~~~l~~l~~L~~L~l~ 302 (790)
.-..+|.++. .|+.+.+... ++.+...+|.++.+|+.+.+..+. ++ .+...+|..+.+|+.+.+.
T Consensus 54 Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~-~Ig~~aF~~c~~L~~i~~~ 122 (394)
T 4gt6_A 54 IGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVK-KIGRQAFMFCSELTDIPIL 122 (394)
T ss_dssp ECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCC-EECTTTTTTCTTCCBCGGG
T ss_pred cCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeee-EechhhchhcccceeeccC
Confidence 3445677764 5888887543 566666778888888888776653 22 3444446666666655443
No 148
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.99 E-value=8.7e-10 Score=115.25 Aligned_cols=102 Identities=16% Similarity=0.175 Sum_probs=63.3
Q ss_pred EEEccCc-cCCCCCCcccccCCCCCEEeCCC-CcCCcCCCccccCCCCCCEEeCcCccCccccCccccCCCCCCEEECcC
Q 047929 650 SIDISMN-NFSGEIPMEVTNLKGLQSLNLSH-NSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLSFLNHLNLSD 727 (790)
Q Consensus 650 ~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~ 727 (790)
.++.+++ ++. .+|. +..+++|++|+|++ |.+++..+..|.++++|+.|+|++|++.+..|..|..+++|+.|+|++
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 3566665 555 3555 66666666666664 666655556666666666666666666666666666666666666666
Q ss_pred CcccccCCCCCcCCccCCccccCCcc
Q 047929 728 NKLVGKIPSSTQLQSFGASSITGNDL 753 (790)
Q Consensus 728 n~l~~~~p~~~~~~sl~~l~~~~n~l 753 (790)
|++.+.+|......+|+.|.+.+|.+
T Consensus 90 N~l~~~~~~~~~~~~L~~l~l~~N~~ 115 (347)
T 2ifg_A 90 NALESLSWKTVQGLSLQELVLSGNPL 115 (347)
T ss_dssp SCCSCCCSTTTCSCCCCEEECCSSCC
T ss_pred CccceeCHHHcccCCceEEEeeCCCc
Confidence 66665444444433466666666633
No 149
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.95 E-value=3.6e-11 Score=125.87 Aligned_cols=16 Identities=31% Similarity=0.195 Sum_probs=7.9
Q ss_pred cCCCCcEEEccCcccC
Q 047929 345 LFKNLHTLALSDNSVS 360 (790)
Q Consensus 345 ~l~~L~~L~L~~~~i~ 360 (790)
..++|++|+|++|.+.
T Consensus 237 ~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 237 EHPSLELLHLYFNELS 252 (372)
T ss_dssp HCSSCCEEECTTSSCC
T ss_pred hCCCCCEEeccCCCCC
Confidence 3445555555555544
No 150
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.89 E-value=3.3e-09 Score=110.81 Aligned_cols=58 Identities=26% Similarity=0.293 Sum_probs=29.7
Q ss_pred eEEEccCccCCCCCCcccccCCCCCEEeCCCCcCCcCCCccccCCCCCCEEeCcCccCc
Q 047929 649 RSIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQIS 707 (790)
Q Consensus 649 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~ 707 (790)
+.|+|++|.+++..|..|.++++|+.|+|++|++++..+..|..++ |+.|++.+|.+.
T Consensus 59 ~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 59 RNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp SEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred CEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 3555555555554444555555555555555555543333344333 555555555554
No 151
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.82 E-value=8.3e-07 Score=93.70 Aligned_cols=66 Identities=9% Similarity=0.066 Sum_probs=33.2
Q ss_pred EEEccCccCCCCCCcccccCCCCCEEeCCCCcCCcCCCccccCCCCCCEEeCcCccCccccCccccCC
Q 047929 650 SIDISMNNFSGEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQISGKIPQSMSSL 717 (790)
Q Consensus 650 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l 717 (790)
.+++.++.+...-...|.++.+|+.+.|..+ ++.....+|.++++|+.+.+..+ ++..-..+|...
T Consensus 290 ~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c 355 (379)
T 4h09_A 290 KVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGS 355 (379)
T ss_dssp EEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTS
T ss_pred cccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCC
Confidence 3444444333223344555666666666543 44344456666666666666543 443334455443
No 152
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.74 E-value=1.4e-06 Score=91.97 Aligned_cols=87 Identities=17% Similarity=0.209 Sum_probs=56.3
Q ss_pred cccccCCCCCEEEccCCccCCCcccccccccccccCCCccCCCCCCcEEEccCCcccccCCcCCCCCCCCCEEEccCCcc
Q 047929 438 SWLHSQKHLSKLDISNTRISDIIPRWFWNSIYQDTIPDCWMNWPDLRVLNLGNNKFTGSIPISMGTLTSLRSLNLRSNRL 517 (790)
Q Consensus 438 ~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~i 517 (790)
.+|.++.+|+.+.+..+ +..+. ...|..+++|+.+.+.++.++......|.+|.+|+.+.+..+ +
T Consensus 257 ~aF~~~~~l~~i~l~~~-i~~i~-------------~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l 321 (379)
T 4h09_A 257 FLLQNCTALKTLNFYAK-VKTVP-------------YLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-L 321 (379)
T ss_dssp TTTTTCTTCCEEEECCC-CSEEC-------------TTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-C
T ss_pred cccceeehhcccccccc-ceecc-------------ccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-c
Confidence 34556666666666433 22211 134566777777777777776566667777788888887643 6
Q ss_pred cccCCccccCCCCCcEEECcCC
Q 047929 518 SGIIPVPFENCSQLVALDMGEN 539 (790)
Q Consensus 518 ~~~~~~~l~~l~~L~~L~l~~n 539 (790)
+.+...+|.+|++|+.+.+..+
T Consensus 322 ~~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 322 KTIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp CEECTTTTTTCTTCCCCCCCTT
T ss_pred cEEHHHHhhCCCCCCEEEECCc
Confidence 6666677888888887777654
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.67 E-value=5.1e-09 Score=108.43 Aligned_cols=202 Identities=15% Similarity=0.234 Sum_probs=107.2
Q ss_pred CCcEEEEEcCCCCCCc--------cccccCcCCCCCCEEeCCCCCCCC--------CCcCccccCCCCCCEEeCCCCccc
Q 047929 46 TGHVLELNLERSELGG--------KINPALVDLKHLNLLDLSGNDFQG--------IQIPEYIGSMDNLRYLNLSGAGFA 109 (790)
Q Consensus 46 ~~~v~~L~L~~~~~~~--------~~~~~l~~l~~L~~L~Ls~~~~~~--------~~l~~~~~~l~~L~~L~Ls~~~~~ 109 (790)
..+|+.|.+......+ .+..++.++++|+.|.+....... ..+...+..+++|+.|+++++.-.
T Consensus 106 ~~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l 185 (362)
T 2ra8_A 106 LPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL 185 (362)
T ss_dssp GGGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC
T ss_pred chhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc
Confidence 3467778777655432 124556678899999886643321 124455667788888888776322
Q ss_pred ccCCCCCCCCCCCcEEECcCCcccccccCccccCCCCCCcEEECCCCCCCCCchhHHhhCCCCCCCEEEccCc--c----
Q 047929 110 GWIPHQLGNLSNLMHLDLSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKASDWLLVINSLPSLKVLKLFSC--K---- 183 (790)
Q Consensus 110 ~~lp~~l~~l~~L~~L~ls~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~--~---- 183 (790)
. ++. +. +++|++|++..+.+. ...+..+. ...+|+|++|+|+.+ .
T Consensus 186 ~-l~~-~~-~~~L~~L~L~~~~l~--~~~l~~l~------------------------~~~lp~L~~L~L~~~~~~~~~~ 236 (362)
T 2ra8_A 186 S-IGK-KP-RPNLKSLEIISGGLP--DSVVEDIL------------------------GSDLPNLEKLVLYVGVEDYGFD 236 (362)
T ss_dssp B-CCS-CB-CTTCSEEEEECSBCC--HHHHHHHH------------------------HSBCTTCCEEEEECBCGGGTCC
T ss_pred e-ecc-cc-CCCCcEEEEecCCCC--hHHHHHHH------------------------HccCCCCcEEEEeccccccccc
Confidence 2 333 33 677888887766432 11122221 123455555544321 1
Q ss_pred --ccccCcccC--cCCCCCCEEECCCCCCCCCCcchhcc---CCCCCcEEEccCCcCCCC----CCccCCCCCCCcEEeC
Q 047929 184 --LHHFAPLAS--ANFSSLNALDLSGNLFGKTSIPSWVF---GLSDLVFLDLSSNIFRGP----IPDGFKNLTSLRYLDL 252 (790)
Q Consensus 184 --~~~~~~~~l--~~l~~L~~L~L~~~~l~~~~lp~~l~---~l~~L~~L~l~~~~~~~~----~p~~~~~l~~L~~L~l 252 (790)
+..+. ..+ ..+++|++|++.+|.+.+ ..+..+. .+++|++|+++.|.+... ++..+..+++|+.|++
T Consensus 237 ~~~~~l~-~~l~~~~~p~Lr~L~L~~~~i~~-~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L 314 (362)
T 2ra8_A 237 GDMNVFR-PLFSKDRFPNLKWLGIVDAEEQN-VVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINM 314 (362)
T ss_dssp SCGGGTG-GGSCTTTCTTCCEEEEESCTTHH-HHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEEC
T ss_pred hhHHHHH-HHHhcCCCCCcCEEeCCCCCCch-HHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEEC
Confidence 00010 111 235666666666665532 1122221 356777777777766542 2333345678888888
Q ss_pred CCCcCCccccccccC-CCCCCEEEccCcc
Q 047929 253 SYNQFNSTISDCFSN-FDDLEYLSLGYNR 280 (790)
Q Consensus 253 ~~~~~~~~~~~~l~~-l~~L~~L~l~~~~ 280 (790)
++|.++......+.. + ...++++.++
T Consensus 315 ~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 315 KYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp CSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred CCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 888776544444432 2 2345555543
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.55 E-value=9.3e-08 Score=98.96 Aligned_cols=62 Identities=15% Similarity=0.125 Sum_probs=36.8
Q ss_pred cchhccCCCCCcEEEccCCcCCCCCCccCCCCCCCcEEeCCCCcCCcccccccc--CCCCCCEEEcc
Q 047929 213 IPSWVFGLSDLVFLDLSSNIFRGPIPDGFKNLTSLRYLDLSYNQFNSTISDCFS--NFDDLEYLSLG 277 (790)
Q Consensus 213 lp~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~~~~l~--~l~~L~~L~l~ 277 (790)
+...+..+++|+.|++++|.-. .++. +. +++|++|++..+.+.......+. .+++|+.|+|+
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY 227 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred HHHHHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence 4455566777888877776311 2232 32 67777777777766543333333 56777777764
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.34 E-value=4.7e-08 Score=91.17 Aligned_cols=72 Identities=10% Similarity=0.119 Sum_probs=44.4
Q ss_pred cccccCcCCCCCCEEeCCCC-CCCCC---CcCccccCCCCCCEEeCCCCccccc----CCCCCCCCCCCcEEECcCCccc
Q 047929 62 KINPALVDLKHLNLLDLSGN-DFQGI---QIPEYIGSMDNLRYLNLSGAGFAGW----IPHQLGNLSNLMHLDLSGSYYE 133 (790)
Q Consensus 62 ~~~~~l~~l~~L~~L~Ls~~-~~~~~---~l~~~~~~l~~L~~L~Ls~~~~~~~----lp~~l~~l~~L~~L~ls~~~~~ 133 (790)
.+...+...+.|++|+|++| .+.+. .+.+.+...++|++|+|++|.+... +...+...++|++|++++|.+.
T Consensus 27 ~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~ 106 (185)
T 1io0_A 27 TLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS 106 (185)
T ss_dssp HHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred HHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCC
Confidence 34455666777777777777 66532 1344555667777777777776542 3334445566777777776544
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.11 E-value=2.8e-07 Score=85.84 Aligned_cols=123 Identities=14% Similarity=0.061 Sum_probs=66.9
Q ss_pred cCccccCCCCCCEEeCCCC-ccccc----CCCCCCCCCCCcEEECcCCcccccccCccccCCCCCCcEEECCCCCCCCCc
Q 047929 88 IPEYIGSMDNLRYLNLSGA-GFAGW----IPHQLGNLSNLMHLDLSGSYYELRVEDISWLAGPSLLEHLDTSDVDLIKAS 162 (790)
Q Consensus 88 l~~~~~~l~~L~~L~Ls~~-~~~~~----lp~~l~~l~~L~~L~ls~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 162 (790)
+...+...++|++|+|++| .+... +...+...++|++|+|++|.+..... .
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~------------------------~ 83 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVA------------------------F 83 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHH------------------------H
T ss_pred HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHH------------------------H
Confidence 3445566778888888887 66542 44455666777777777776542211 1
Q ss_pred hhHHhhCCCCCCCEEEccCccccccC----cccCcCCCCCCEEEC--CCCCCCCCC---cchhccCCCCCcEEEccCCcC
Q 047929 163 DWLLVINSLPSLKVLKLFSCKLHHFA----PLASANFSSLNALDL--SGNLFGKTS---IPSWVFGLSDLVFLDLSSNIF 233 (790)
Q Consensus 163 ~~~~~l~~l~~L~~L~l~~~~~~~~~----~~~l~~l~~L~~L~L--~~~~l~~~~---lp~~l~~l~~L~~L~l~~~~~ 233 (790)
.+...+...+.|++|++++|.+.... ..++...+.|++|++ ++|.+.+.. +...+...++|++|++++|.+
T Consensus 84 ~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 84 ALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 22333444455555555555554421 233444555666666 555554311 223333456666666666654
Q ss_pred C
Q 047929 234 R 234 (790)
Q Consensus 234 ~ 234 (790)
.
T Consensus 164 ~ 164 (185)
T 1io0_A 164 G 164 (185)
T ss_dssp H
T ss_pred C
Confidence 3
No 157
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.01 E-value=1.8e-06 Score=77.89 Aligned_cols=85 Identities=8% Similarity=0.030 Sum_probs=55.2
Q ss_pred CCCCEEEccCCcccccCCccccCCCCCcEEECcCCc-ccccCchhhhhc---CCCCcEEEcCCCc-ccccCCccccCCCC
Q 047929 505 TSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGENE-FVGNIPTWMGER---FSRLRILNLRSNK-LHGIFPIQICHLSS 579 (790)
Q Consensus 505 ~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~n~-~~~~~~~~~~~~---~~~L~~L~L~~n~-~~~~~~~~~~~l~~ 579 (790)
..|+.|++++|.++...-..+.++++|+.|++++|. +++..-..+... .++|++|+|++|. +++..-..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 456777777776665555556667777777777774 444333333321 2468888888874 66544445667888
Q ss_pred CcEEEccCCc
Q 047929 580 LQILDVAYNR 589 (790)
Q Consensus 580 L~~L~ls~n~ 589 (790)
|+.|++++|.
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 8888888885
No 158
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.97 E-value=1e-06 Score=79.42 Aligned_cols=82 Identities=13% Similarity=0.075 Sum_probs=40.6
Q ss_pred cEEEEEcCCCCCCccccccCcCCCCCCEEeCCCCC-CCCCCcCccccCC----CCCCEEeCCCCc-ccccCCCCCCCCCC
Q 047929 48 HVLELNLERSELGGKINPALVDLKHLNLLDLSGND-FQGIQIPEYIGSM----DNLRYLNLSGAG-FAGWIPHQLGNLSN 121 (790)
Q Consensus 48 ~v~~L~L~~~~~~~~~~~~l~~l~~L~~L~Ls~~~-~~~~~l~~~~~~l----~~L~~L~Ls~~~-~~~~lp~~l~~l~~ 121 (790)
++++||++++.+++..-..+..+++|+.|+|++|. +++. --..+..+ ++|++|+|++|. +++..-..+.++++
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~-gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDG-CLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHH-HHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHH-HHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 45666666665554444555555666666665553 3332 12223332 245555555553 44433333444555
Q ss_pred CcEEECcCC
Q 047929 122 LMHLDLSGS 130 (790)
Q Consensus 122 L~~L~ls~~ 130 (790)
|++|++++|
T Consensus 141 L~~L~L~~c 149 (176)
T 3e4g_A 141 LKYLFLSDL 149 (176)
T ss_dssp CCEEEEESC
T ss_pred CCEEECCCC
Confidence 555555544
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.91 E-value=7.6e-06 Score=79.92 Aligned_cols=66 Identities=27% Similarity=0.448 Sum_probs=33.7
Q ss_pred cCCCCCEEeCCCCcCCc--CCCccccCCCCCCEEeCcCccCccccCccccCCC--CCCEEECcCCcccccCC
Q 047929 668 NLKGLQSLNLSHNSFIG--KIPETIGNMRSIESLDLSGNQISGKIPQSMSSLS--FLNHLNLSDNKLVGKIP 735 (790)
Q Consensus 668 ~l~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~--~L~~L~l~~n~l~~~~p 735 (790)
++++|++|+|++|.+++ .+|..+..+++|+.|+|++|++.+. ..+..+. +|++|++++|++.+.+|
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence 34555555555555554 2233344555566666666655533 2233333 56666666666655544
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.86 E-value=8.5e-06 Score=79.59 Aligned_cols=81 Identities=21% Similarity=0.278 Sum_probs=64.4
Q ss_pred hcccceeEEEccCccCCC--CCCcccccCCCCCEEeCCCCcCCcCCCccccCCC--CCCEEeCcCccCccccC-------
Q 047929 643 SILNLVRSIDISMNNFSG--EIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMR--SIESLDLSGNQISGKIP------- 711 (790)
Q Consensus 643 ~~~~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~--~L~~L~l~~n~l~~~~p------- 711 (790)
..++.|+.|+|++|.+.+ .+|..+..+++|+.|+|++|.+.+. ..+..+. +|++|++++|++.+..|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 457789999999999987 4456677899999999999999865 3344444 99999999999987665
Q ss_pred ccccCCCCCCEEEC
Q 047929 712 QSMSSLSFLNHLNL 725 (790)
Q Consensus 712 ~~l~~l~~L~~L~l 725 (790)
..+..+++|+.||=
T Consensus 245 ~il~~~P~L~~LDg 258 (267)
T 3rw6_A 245 AIRERFPKLLRLDG 258 (267)
T ss_dssp HHHHHCTTCCEESS
T ss_pred HHHHHCcccCeECC
Confidence 24677888888863
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.01 E-value=7.7e-05 Score=68.61 Aligned_cols=94 Identities=9% Similarity=0.068 Sum_probs=54.2
Q ss_pred cccccCcCCCCCCEEeCCCC-CCCCC---CcCccccCCCCCCEEeCCCCcccccCC----CCCCCCCCCcEEECcCCccc
Q 047929 62 KINPALVDLKHLNLLDLSGN-DFQGI---QIPEYIGSMDNLRYLNLSGAGFAGWIP----HQLGNLSNLMHLDLSGSYYE 133 (790)
Q Consensus 62 ~~~~~l~~l~~L~~L~Ls~~-~~~~~---~l~~~~~~l~~L~~L~Ls~~~~~~~lp----~~l~~l~~L~~L~ls~~~~~ 133 (790)
.+...+.+-+.|+.|+|+++ .+.+. .+.+++..-+.|+.|+|++|.+.+... .++..-+.|++|+|++|.|.
T Consensus 32 ~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 32 CINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp HHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred HHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 34444556678888888875 55431 144556666778888888887775433 33345567777777777655
Q ss_pred cccc--CccccCCCCCCcEEECCC
Q 047929 134 LRVE--DISWLAGPSLLEHLDTSD 155 (790)
Q Consensus 134 ~~~~--~~~~l~~l~~L~~L~l~~ 155 (790)
..+. ....+..-+.|++|++++
T Consensus 112 ~~Ga~ala~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 112 PELLARLLRSTLVTQSIVEFKADN 135 (197)
T ss_dssp HHHHHHHHHHTTTTCCCSEEECCC
T ss_pred HHHHHHHHHHHhhCCceeEEECCC
Confidence 3221 112333344455555543
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.94 E-value=0.0015 Score=56.12 Aligned_cols=56 Identities=18% Similarity=0.298 Sum_probs=33.8
Q ss_pred EEeCCCCcCC-cCCCccccCCCCCCEEeCcCccCccccCccccCCCCCCEEECcCCccc
Q 047929 674 SLNLSHNSFI-GKIPETIGNMRSIESLDLSGNQISGKIPQSMSSLSFLNHLNLSDNKLV 731 (790)
Q Consensus 674 ~L~L~~n~l~-~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~ 731 (790)
.++.+++.++ ..+|..+. ++|++|+|++|+|+...+..|..+++|+.|+|++|++.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 4555555554 24444333 45677777777776555556666777777777777664
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.38 E-value=0.0013 Score=60.36 Aligned_cols=91 Identities=12% Similarity=0.032 Sum_probs=49.9
Q ss_pred ccccCCCCCCEEeCCCC-ccccc----CCCCCCCCCCCcEEECcCCccccccc--CccccCCCCCCcEEECCCCCCCCC-
Q 047929 90 EYIGSMDNLRYLNLSGA-GFAGW----IPHQLGNLSNLMHLDLSGSYYELRVE--DISWLAGPSLLEHLDTSDVDLIKA- 161 (790)
Q Consensus 90 ~~~~~l~~L~~L~Ls~~-~~~~~----lp~~l~~l~~L~~L~ls~~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~- 161 (790)
..+.+-+.|+.|+|+++ .+... +.+++..-+.|++|+|++|.+..... ....+..-+.|++|+++.|.+...
T Consensus 35 ~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~G 114 (197)
T 1pgv_A 35 RLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPEL 114 (197)
T ss_dssp HHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHH
T ss_pred HHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHH
Confidence 33455678888888875 66542 44556666778888888876553221 112233344555555555555443
Q ss_pred -chhHHhhCCCCCCCEEEcc
Q 047929 162 -SDWLLVINSLPSLKVLKLF 180 (790)
Q Consensus 162 -~~~~~~l~~l~~L~~L~l~ 180 (790)
..+...+..-+.|++|+++
T Consensus 115 a~ala~aL~~N~tL~~L~L~ 134 (197)
T 1pgv_A 115 LARLLRSTLVTQSIVEFKAD 134 (197)
T ss_dssp HHHHHHHTTTTCCCSEEECC
T ss_pred HHHHHHHHhhCCceeEEECC
Confidence 3333444444444444444
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.75 E-value=0.018 Score=49.17 Aligned_cols=56 Identities=14% Similarity=0.254 Sum_probs=46.6
Q ss_pred EEEccCccCC-CCCCcccccCCCCCEEeCCCCcCCcCCCccccCCCCCCEEeCcCccCc
Q 047929 650 SIDISMNNFS-GEIPMEVTNLKGLQSLNLSHNSFIGKIPETIGNMRSIESLDLSGNQIS 707 (790)
Q Consensus 650 ~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~ 707 (790)
.++.++++++ ..+|..+ -++|++|+|++|.++...+..|..+++|+.|+|++|...
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 6888888886 3566544 257999999999999777788999999999999999875
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=48.23 E-value=18 Score=28.56 Aligned_cols=40 Identities=18% Similarity=0.262 Sum_probs=20.2
Q ss_pred CcCCCCCCCCCEEEccCCcccccCCccccCCCCCcEEECcC
Q 047929 498 PISMGTLTSLRSLNLRSNRLSGIIPVPFENCSQLVALDMGE 538 (790)
Q Consensus 498 ~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l~~ 538 (790)
...|.+|.+|+.+.|-.+ ++.+....|.+|.+|+.+.+.+
T Consensus 13 ~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 13 KSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp SCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred HHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 344555555555555443 3334445555555555555543
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=31.95 E-value=65 Score=25.28 Aligned_cols=40 Identities=13% Similarity=0.142 Sum_probs=19.2
Q ss_pred cccCcCCCCCCEEeCCCCCCCCCCcCccccCCCCCCEEeCCC
Q 047929 64 NPALVDLKHLNLLDLSGNDFQGIQIPEYIGSMDNLRYLNLSG 105 (790)
Q Consensus 64 ~~~l~~l~~L~~L~Ls~~~~~~~~l~~~~~~l~~L~~L~Ls~ 105 (790)
..+|..|..|+.+.+..+ ++.+ -..+|.++.+|+.+.+..
T Consensus 13 ~~aF~~c~~L~~i~iP~~-v~~I-g~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 13 KSLFAGNTVIREITVQPN-IGLL-YDGMFSGCTALEKLILTG 52 (100)
T ss_dssp SCTTTTCTTCCCEEECTT-SSCC-CTTSSTTCTTCCCEEECC
T ss_pred HHHhcCCCCCcEEEcCCc-hheE-cHHHHhccCCccEEEEcC
Confidence 345555555555555443 2222 233455555555555544
Done!