BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047930
(395 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 65/249 (26%), Positives = 103/249 (41%), Gaps = 45/249 (18%)
Query: 172 NPDVNMLGIYGMGGIGKTTLAKEVAR-KAENEKLFD-QVIFVEVSQIQD----IRKIQG- 224
N + + IYGM G GK+ LA E R + E F V +V + + QD + K+Q
Sbjct: 144 NGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGK-QDKSGLLMKLQNL 202
Query: 225 --------EFADKLGLTLHEETESGRARSLCNRLKKEKRILVILDNIWENLDFQAVGIPH 276
F+ +L L + E + R R L L+K R L+ILD++W+ +A
Sbjct: 203 CMRLDQEESFSQRLPLNIEEAKD--RLRVL--MLRKHPRSLLILDDVWDPWVLKAFD--- 255
Query: 277 GDGHKGSKVLLTARSLDVLSRKMDSQQNFSFDVL----KEDEAWSLFKKMAGDYIEGSEF 332
++LLT R V M + + K E SLF M + +
Sbjct: 256 ----NQCQILLTTRDKSVTDSVMGPKHVVPVESGLGREKGLEILSLFVNMKKEDLPAE-- 309
Query: 333 KWVAREVAKECAGLPVSIVTVARALRNKRLFEWKDALEQL--------RRPSSTNFKDIQ 384
A + KEC G P+ +V++ AL W L QL R+ SS +++ +
Sbjct: 310 ---AHSIIKECKGSPL-VVSLIGALLRDFPNRWAYYLRQLQNKQFKRIRKSSSYDYEALD 365
Query: 385 PTAYKAIEL 393
++E+
Sbjct: 366 EAMSISVEM 374
>pdb|1Z6T|A Chain A, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|B Chain B, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|C Chain C, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|D Chain D, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
Length = 591
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 66/237 (27%), Positives = 105/237 (44%), Gaps = 47/237 (19%)
Query: 180 IYGMGGIGKTTLAKEVAR-KAENEKLFD-QVIFVEVSQIQD----IRKIQG--------- 224
I+GM G GK+ LA E R + E F V +V V + QD + K+Q
Sbjct: 152 IHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGK-QDKSGLLMKLQNLCTRLDQDE 210
Query: 225 EFADKLGLTLHEETESGRARSLCNRLKKEKRILVILDNIWENLDFQAVGIPHGDGHKGSK 284
F+ +L L + E + R R L L+K R L+ILD++W++ +A +
Sbjct: 211 SFSQRLPLNIEEAKD--RLRIL--MLRKHPRSLLILDDVWDSWVLKAFD-------SQCQ 259
Query: 285 VLLTARSLDVLSRKMDSQQ----NFSFDVLKEDEAWSLFKKMAGDYIEGSEFKWVAREVA 340
+LLT R V M + S K E SLF M + ++ A +
Sbjct: 260 ILLTTRDKSVTDSVMGPKYVVPVESSLGKEKGLEILSLFVNM-----KKADLPEQAHSII 314
Query: 341 KECAGLPVSIVTVARALRNKRLFE--WKDALEQLRRPSSTNFKDIQPTA---YKAIE 392
KEC G P+ + + LR+ F W+ L+QL+ + FK I+ ++ Y+A++
Sbjct: 315 KECKGSPLVVSLIGALLRD---FPNRWEYYLKQLQ---NKQFKRIRKSSSYDYEALD 365
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 65/241 (26%), Positives = 104/241 (43%), Gaps = 45/241 (18%)
Query: 180 IYGMGGIGKTTLAKEVAR-KAENEKLFD-QVIFVEVSQIQD----IRKIQG--------- 224
I+GM G GK+ LA E R + E F V +V V + QD + K+Q
Sbjct: 158 IHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGK-QDKSGLLMKLQNLCTRLDQDE 216
Query: 225 EFADKLGLTLHEETESGRARSLCNRLKKEKRILVILDNIWENLDFQAVGIPHGDGHKGSK 284
F+ +L L + E + R R L L+K R L+ILD++W++ +A +
Sbjct: 217 SFSQRLPLNIEEAKD--RLRIL--MLRKHPRSLLILDDVWDSWVLKAFD-------SQCQ 265
Query: 285 VLLTARSLDVLSRKMDSQQ----NFSFDVLKEDEAWSLFKKMAGDYIEGSEFKWVAREVA 340
+LLT R V M + S K E SLF M + ++ A +
Sbjct: 266 ILLTTRDKSVTDSVMGPKYVVPVESSLGKEKGLEILSLFVNM-----KKADLPEQAHSII 320
Query: 341 KECAGLPVSIVTVARALRNKRLFEWKDALEQL--------RRPSSTNFKDIQPTAYKAIE 392
KEC G P+ +V++ AL W+ L+QL R+ SS +++ + ++E
Sbjct: 321 KECKGSPL-VVSLIGALLRDFPNRWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVE 379
Query: 393 L 393
+
Sbjct: 380 M 380
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 64/249 (25%), Positives = 102/249 (40%), Gaps = 45/249 (18%)
Query: 172 NPDVNMLGIYGMGGIGKTTLAKEVAR-KAENEKLFD-QVIFVEVSQIQD----IRKIQG- 224
N + + IYGM G GK+ LA E R + E F V +V + + QD + K+Q
Sbjct: 151 NGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGK-QDKSGLLMKLQNL 209
Query: 225 --------EFADKLGLTLHEETESGRARSLCNRLKKEKRILVILDNIWENLDFQAVGIPH 276
F+ +L L + E + R R L L+K R L+ILD++W+ +A
Sbjct: 210 CMRLDQEESFSQRLPLNIEEAKD--RLRVL--MLRKHPRSLLILDDVWDPWVLKAFD--- 262
Query: 277 GDGHKGSKVLLTARSLDVLSRKMDSQQNFSFDVL----KEDEAWSLFKKMAGDYIEGSEF 332
++LLT V M + + K E SLF M + +
Sbjct: 263 ----NQCQILLTTSDKSVTDSVMGPKHVVPVESGLGREKGLEILSLFVNMKKEDLPAE-- 316
Query: 333 KWVAREVAKECAGLPVSIVTVARALRNKRLFEWKDALEQL--------RRPSSTNFKDIQ 384
A + KEC G P+ +V++ AL W L QL R+ SS +++ +
Sbjct: 317 ---AHSIIKECKGSPL-VVSLIGALLRDFPNRWAYYLRQLQNKQFKRIRKSSSYDYEALD 372
Query: 385 PTAYKAIEL 393
++E+
Sbjct: 373 EAMSISVEM 381
>pdb|1W5S|A Chain A, Structure Of The Aeropyrum Pernix Orc2 Protein (Adp Form)
pdb|1W5S|B Chain B, Structure Of The Aeropyrum Pernix Orc2 Protein (Adp Form)
pdb|1W5T|A Chain A, Structure Of The Aeropyrum Pernix Orc2 Protein (Adpnp-Adp
Complexes)
pdb|1W5T|B Chain B, Structure Of The Aeropyrum Pernix Orc2 Protein (Adpnp-Adp
Complexes)
pdb|1W5T|C Chain C, Structure Of The Aeropyrum Pernix Orc2 Protein (Adpnp-Adp
Complexes)
Length = 412
Score = 31.6 bits (70), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 73/190 (38%), Gaps = 29/190 (15%)
Query: 163 LNDILDALKNPDVNML-GIYGMGGIGKTTLA----KEVARKAENEKLFDQVIFVEVSQIQ 217
LN +L DVNM+ G G GIGKTTLA K V+ A E L + +V
Sbjct: 39 LNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAP 98
Query: 218 DIRKIQGEFADKLGLTLHEETESGR--ARSLCNRLKKEKR-ILVILDNIWENLDFQAVG- 273
++ I + G + ++L + L E +LVILD L +
Sbjct: 99 NLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAA 158
Query: 274 ------------IPHGDGHKGSKVLLTARSLDVLSR------KMDSQQNFSFDV--LKED 313
IP DG LL A + LS +++SQ F + K
Sbjct: 159 EDLYTLLRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSR 218
Query: 314 EAWSLFKKMA 323
E +++ ++ A
Sbjct: 219 ELYTILEQRA 228
>pdb|2IIR|A Chain A, Acetate Kinase From A Hypothermophile Thermotoga Maritima
pdb|2IIR|B Chain B, Acetate Kinase From A Hypothermophile Thermotoga Maritima
pdb|2IIR|C Chain C, Acetate Kinase From A Hypothermophile Thermotoga Maritima
pdb|2IIR|D Chain D, Acetate Kinase From A Hypothermophile Thermotoga Maritima
pdb|2IIR|E Chain E, Acetate Kinase From A Hypothermophile Thermotoga Maritima
pdb|2IIR|F Chain F, Acetate Kinase From A Hypothermophile Thermotoga Maritima
pdb|2IIR|G Chain G, Acetate Kinase From A Hypothermophile Thermotoga Maritima
pdb|2IIR|H Chain H, Acetate Kinase From A Hypothermophile Thermotoga Maritima
pdb|2IIR|I Chain I, Acetate Kinase From A Hypothermophile Thermotoga Maritima
pdb|2IIR|J Chain J, Acetate Kinase From A Hypothermophile Thermotoga Maritima
Length = 403
Score = 31.2 bits (69), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 62/135 (45%), Gaps = 23/135 (17%)
Query: 35 NLQNLKTEVGNLEAERVSKQREVDEAKRRGEE------------IEKYVEKWLASVNGVI 82
++ N K+ V L S R+++EA +G+E I KY+ + A++NGV
Sbjct: 265 DILNKKSGVYGLSKGFSSDMRDIEEAALKGDEWCKLVLEIYDYRIAKYIGAYAAAMNGV- 323
Query: 83 DEAEKFTGVDARANKRCFKGLCPNL-----KIRRRLSKEAERQKEAIVKVREAGRFDRIS 137
+A FT + + +C L K+ ++ ++E R KE I+ ++ R+
Sbjct: 324 -DAIVFTAGVGENSPITREDVCSYLEFLGVKLDKQKNEETIRGKEGIISTPDS----RVK 378
Query: 138 YNIIPDDSLLLSNKD 152
++P + L+ +D
Sbjct: 379 VLVVPTNEELMIARD 393
>pdb|2FCA|A Chain A, The Structure Of Bstrmb
pdb|2FCA|B Chain B, The Structure Of Bstrmb
Length = 213
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 44/91 (48%), Gaps = 6/91 (6%)
Query: 169 ALKNPDVNMLGIYGMGGIGKTTLAKEVARKAENEKLF--DQVIFVEVSQIQDIRKIQGEF 226
A +NPD+N +GI + T + K +A+N KL D +V + +++++ F
Sbjct: 57 AKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNF 116
Query: 227 ADKLGLTLHEETESGRARSLCNRLKKEKRIL 257
+D HE+ R + + LKK + ++
Sbjct: 117 SDPWPKKRHEK----RRLTYSHFLKKYEEVM 143
>pdb|1F48|A Chain A, Crystal Structure Of The Escherichia Coli
Arsenite-Translocating Atpase
pdb|1IHU|A Chain A, Crystal Structure Of The Escherichia Coli
Arsenite-Translocating Atpase In Complex With
Mg-Adp-Alf3
pdb|1II0|A Chain A, Crystal Structure Of The Escherichia Coli
Arsenite-Translocating Atpase
pdb|1II0|B Chain B, Crystal Structure Of The Escherichia Coli
Arsenite-Translocating Atpase
pdb|1II9|A Chain A, Crystal Structure Of The Escherichia Coli Arsenite-
Translocating Atpase In Complex With Amp-Pnp
pdb|1II9|B Chain B, Crystal Structure Of The Escherichia Coli Arsenite-
Translocating Atpase In Complex With Amp-Pnp
Length = 589
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 28/48 (58%)
Query: 149 SNKDYEAFESRMSTLNDILDALKNPDVNMLGIYGMGGIGKTTLAKEVA 196
S+ +Y + +L+ ++D + + ++ + G GG+GKTT+A +A
Sbjct: 301 SSDEYLQQRPDIPSLSALVDDIARNEHGLIMLMGKGGVGKTTMAAAIA 348
>pdb|3SDB|A Chain A, Crystal Structure Of C176a Mutant Of Glutamine-Dependent
Nad+ Synthetase From M. Tuberculosis In Apo Form
pdb|3SEQ|A Chain A, Crystal Structure Of C176a Mutant Of Glutamine-Dependent
Nad+ Synthetase From M. Tuberculosis In Complex With
Ampcpp And Naad+
pdb|3SEQ|B Chain B, Crystal Structure Of C176a Mutant Of Glutamine-Dependent
Nad+ Synthetase From M. Tuberculosis In Complex With
Ampcpp And Naad+
pdb|3SEQ|C Chain C, Crystal Structure Of C176a Mutant Of Glutamine-Dependent
Nad+ Synthetase From M. Tuberculosis In Complex With
Ampcpp And Naad+
pdb|3SEQ|D Chain D, Crystal Structure Of C176a Mutant Of Glutamine-Dependent
Nad+ Synthetase From M. Tuberculosis In Complex With
Ampcpp And Naad+
pdb|3SEZ|A Chain A, Crystal Structure Of C176a Mutant Of Glutamine-Dependent
Nad+ Synthetase From M. Tuberculosis In Complex With Atp
And Naad+
pdb|3SEZ|B Chain B, Crystal Structure Of C176a Mutant Of Glutamine-Dependent
Nad+ Synthetase From M. Tuberculosis In Complex With Atp
And Naad+
pdb|3SEZ|C Chain C, Crystal Structure Of C176a Mutant Of Glutamine-Dependent
Nad+ Synthetase From M. Tuberculosis In Complex With Atp
And Naad+
pdb|3SEZ|D Chain D, Crystal Structure Of C176a Mutant Of Glutamine-Dependent
Nad+ Synthetase From M. Tuberculosis In Complex With Atp
And Naad+
pdb|3SZG|A Chain A, Crystal Structure Of C176a Glutamine-Dependent Nad+
Synthetase From M. Tuberculosis Bound To AmpPPI AND
NAAD+
pdb|3SZG|B Chain B, Crystal Structure Of C176a Glutamine-Dependent Nad+
Synthetase From M. Tuberculosis Bound To AmpPPI AND
NAAD+
pdb|3SZG|C Chain C, Crystal Structure Of C176a Glutamine-Dependent Nad+
Synthetase From M. Tuberculosis Bound To AmpPPI AND
NAAD+
pdb|3SZG|D Chain D, Crystal Structure Of C176a Glutamine-Dependent Nad+
Synthetase From M. Tuberculosis Bound To AmpPPI AND
NAAD+
Length = 680
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 76/192 (39%), Gaps = 33/192 (17%)
Query: 12 AAKCLAPPIYRQMSYLRKSKYTSNL----QNLKTEVGNLEAERVSKQREVDEAKRRGEEI 67
+A+CLA +Y + + T++L Q + E G L AE E
Sbjct: 222 SARCLAAYVYAAAG---EGESTTDLAWDGQTMIWENGALLAES--------------ERF 264
Query: 68 EKYVEKWLASVNGVIDEAEKFTGVDARANKRCFKGLCPNLKIRRRLSKEAERQKEAIVKV 127
K V + +A V+ + +E+ N+R + L + RR+ + I +
Sbjct: 265 PKGVRRSVADVDTELLRSERLRMGTFDDNRRHHRELTESF---RRIDFALDPPAGDIGLL 321
Query: 128 REAGRFDRISYNIIPDDSLLLSNKDYEAFESRMSTLNDILDALKNPDVNMLGIYGMGGIG 187
RE RF +P D L YEA+ ++S L L AL P V + G+ G
Sbjct: 322 REVERFP-----FVPADPQRLQQDCYEAYNIQVSGLEQRLRALDYPKV----VIGVSGGL 372
Query: 188 KTTLAKEVARKA 199
+T A VA A
Sbjct: 373 DSTHALIVATHA 384
>pdb|3DLA|A Chain A, X-ray Crystal Structure Of Glutamine-dependent Nad+
Synthetase From Mycobacterium Tuberculosis Bound To
Naad+ And Don
pdb|3DLA|B Chain B, X-ray Crystal Structure Of Glutamine-dependent Nad+
Synthetase From Mycobacterium Tuberculosis Bound To
Naad+ And Don
pdb|3DLA|C Chain C, X-ray Crystal Structure Of Glutamine-dependent Nad+
Synthetase From Mycobacterium Tuberculosis Bound To
Naad+ And Don
pdb|3DLA|D Chain D, X-ray Crystal Structure Of Glutamine-dependent Nad+
Synthetase From Mycobacterium Tuberculosis Bound To
Naad+ And Don
pdb|3SYT|A Chain A, Crystal Structure Of Glutamine-Dependent Nad+ Synthetase
From M. Tuberculosis Bound To AmpPPI, NAD+, AND
GLUTAMATE
pdb|3SYT|B Chain B, Crystal Structure Of Glutamine-Dependent Nad+ Synthetase
From M. Tuberculosis Bound To AmpPPI, NAD+, AND
GLUTAMATE
pdb|3SYT|C Chain C, Crystal Structure Of Glutamine-Dependent Nad+ Synthetase
From M. Tuberculosis Bound To AmpPPI, NAD+, AND
GLUTAMATE
pdb|3SYT|D Chain D, Crystal Structure Of Glutamine-Dependent Nad+ Synthetase
From M. Tuberculosis Bound To AmpPPI, NAD+, AND
GLUTAMATE
Length = 680
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 76/192 (39%), Gaps = 33/192 (17%)
Query: 12 AAKCLAPPIYRQMSYLRKSKYTSNL----QNLKTEVGNLEAERVSKQREVDEAKRRGEEI 67
+A+CLA +Y + + T++L Q + E G L AE E
Sbjct: 222 SARCLAAYVYAAAG---EGESTTDLAWDGQTMIWENGALLAES--------------ERF 264
Query: 68 EKYVEKWLASVNGVIDEAEKFTGVDARANKRCFKGLCPNLKIRRRLSKEAERQKEAIVKV 127
K V + +A V+ + +E+ N+R + L + RR+ + I +
Sbjct: 265 PKGVRRSVADVDTELLRSERLRMGTFDDNRRHHRELTESF---RRIDFALDPPAGDIGLL 321
Query: 128 REAGRFDRISYNIIPDDSLLLSNKDYEAFESRMSTLNDILDALKNPDVNMLGIYGMGGIG 187
RE RF +P D L YEA+ ++S L L AL P V + G+ G
Sbjct: 322 REVERFP-----FVPADPQRLQQDCYEAYNIQVSGLEQRLRALDYPKV----VIGVSGGL 372
Query: 188 KTTLAKEVARKA 199
+T A VA A
Sbjct: 373 DSTHALIVATHA 384
>pdb|1XHG|A Chain A, Crystal Structure Of A 40 Kda Signalling Protein From
Porcine (spp-40) At 2.89a Resolution
pdb|1XRV|A Chain A, Crystal Structure Of The Novel Secretory Signalling
Protein From Porcine (Spp-40) At 2.1a Resolution.
pdb|1ZBC|A Chain A, Crystal Structure Of The Porcine Signalling Protein
Liganded With The Peptide Trp-Pro-Trp (Wpw) At 2.3 A
Resolution
pdb|1ZB5|A Chain A, Recognition Of Peptide Ligands By Signalling Protein From
Porcine Mammary Gland (Spp-40): Crystal Structure Of The
Complex Of Spp-40 With A Peptide Trp-Pro-Trp At 2.45a
Resolution
Length = 361
Score = 28.5 bits (62), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 148 LSNKDYEAFESRMSTLNDILDALKNPDVNMLGIYGMGG--IGKTTLAKEVARKAENEKLF 205
+SN + + +E TL D L+ LKN + N+ + +GG G +K +A K ++ + F
Sbjct: 40 ISNNEIDTWEWNDVTLYDTLNTLKNRNPNLKTLLSVGGWNFGPQRFSK-IASKTQSRRTF 98
>pdb|1N03|A Chain A, Model For Active Reca Filament
pdb|1N03|B Chain B, Model For Active Reca Filament
pdb|1N03|C Chain C, Model For Active Reca Filament
pdb|1N03|D Chain D, Model For Active Reca Filament
pdb|1N03|E Chain E, Model For Active Reca Filament
pdb|1N03|F Chain F, Model For Active Reca Filament
pdb|1N03|G Chain G, Model For Active Reca Filament
pdb|1REA|A Chain A, Structure Of The Reca Protein-Adp Complex
pdb|2REB|A Chain A, The Structure Of The E. Coli Reca Protein Monomer And
Polymer
Length = 352
Score = 28.1 bits (61), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 66/154 (42%), Gaps = 17/154 (11%)
Query: 152 DYEAFESRMSTLNDILDALKNPDVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFV 211
D E + +L+ L A P ++ IYG GKTTL +V A+ E F+
Sbjct: 36 DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREG--KTCAFI 93
Query: 212 EVSQIQDIRKIQGEFADKLGL----TLHEETESG-RARSLCNRLKKEKRI-LVILDNIWE 265
+ D +A KLG+ L + ++G +A +C+ L + + ++++D++
Sbjct: 94 DAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAA 148
Query: 266 NLDFQAVGIPHGDGHKGSKVLLTARSLDVLSRKM 299
+ GD H G L AR + RK+
Sbjct: 149 LTPKAEIEGEIGDSHMG----LAARMMSQAMRKL 178
>pdb|1TFV|A Chain A, Crystal Structure Of A Buffalo Signaling Glycoprotein
(Spb-40) Secreted During Involution
pdb|2O9O|A Chain A, Crystal Structure Of The Buffalo Secretory Signalling
Glycoprotein At 2.8 A Resolution
pdb|2QF8|A Chain A, Crystal Structure Of The Complex Of Buffalo Secretory
Glycoprotein With Tetrasaccharide At 2.8a Resolution
Length = 361
Score = 28.1 bits (61), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 148 LSNKDYEAFESRMSTLNDILDALKNPDVNMLGIYGMGG--IGKTTLAKEVARKAENEKLF 205
+SN + + +E TL D L+ LKN + N+ + +GG G +K +A K ++ + F
Sbjct: 40 ISNNEIDTWEWNDVTLYDTLNTLKNRNPNLKTLLSVGGWNYGSQRFSK-IASKTQSRRTF 98
>pdb|3CMT|A Chain A, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
pdb|3CMT|D Chain D, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
pdb|3CMW|A Chain A, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
pdb|3CMW|C Chain C, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
pdb|3CMX|A Chain A, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
pdb|3CMX|D Chain D, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
Length = 1706
Score = 28.1 bits (61), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 66/154 (42%), Gaps = 17/154 (11%)
Query: 152 DYEAFESRMSTLNDILDALKNPDVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFV 211
D E + +L+ L A P ++ IYG GKTTL +V A+ E F+
Sbjct: 11 DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREG--KTCAFI 68
Query: 212 EVSQIQDIRKIQGEFADKLGL----TLHEETESG-RARSLCNRLKKEKRI-LVILDNIWE 265
+ D +A KLG+ L + ++G +A +C+ L + + ++++D++
Sbjct: 69 DAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAA 123
Query: 266 NLDFQAVGIPHGDGHKGSKVLLTARSLDVLSRKM 299
+ GD H G L AR + RK+
Sbjct: 124 LTPKAEIEGEIGDSHMG----LAARMMSQAMRKL 153
Score = 28.1 bits (61), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 66/154 (42%), Gaps = 17/154 (11%)
Query: 152 DYEAFESRMSTLNDILDALKNPDVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFV 211
D E + +L+ L A P ++ IYG GKTTL +V A+ E F+
Sbjct: 360 DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREG--KTCAFI 417
Query: 212 EVSQIQDIRKIQGEFADKLGL----TLHEETESG-RARSLCNRLKKEKRI-LVILDNIWE 265
+ D +A KLG+ L + ++G +A +C+ L + + ++++D++
Sbjct: 418 DAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAA 472
Query: 266 NLDFQAVGIPHGDGHKGSKVLLTARSLDVLSRKM 299
+ GD H G L AR + RK+
Sbjct: 473 LTPKAEIEGEIGDSHMG----LAARMMSQAMRKL 502
Score = 28.1 bits (61), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 66/154 (42%), Gaps = 17/154 (11%)
Query: 152 DYEAFESRMSTLNDILDALKNPDVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFV 211
D E + +L+ L A P ++ IYG GKTTL +V A+ E F+
Sbjct: 709 DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREG--KTCAFI 766
Query: 212 EVSQIQDIRKIQGEFADKLGL----TLHEETESG-RARSLCNRLKKEKRI-LVILDNIWE 265
+ D +A KLG+ L + ++G +A +C+ L + + ++++D++
Sbjct: 767 DAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAA 821
Query: 266 NLDFQAVGIPHGDGHKGSKVLLTARSLDVLSRKM 299
+ GD H G L AR + RK+
Sbjct: 822 LTPKAEIEGEIGDSHMG----LAARMMSQAMRKL 851
Score = 28.1 bits (61), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 66/154 (42%), Gaps = 17/154 (11%)
Query: 152 DYEAFESRMSTLNDILDALKNPDVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFV 211
D E + +L+ L A P ++ IYG GKTTL +V A+ E F+
Sbjct: 1059 DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREG--KTCAFI 1116
Query: 212 EVSQIQDIRKIQGEFADKLGL----TLHEETESG-RARSLCNRLKKEKRI-LVILDNIWE 265
+ D +A KLG+ L + ++G +A +C+ L + + ++++D++
Sbjct: 1117 DAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAA 1171
Query: 266 NLDFQAVGIPHGDGHKGSKVLLTARSLDVLSRKM 299
+ GD H G L AR + RK+
Sbjct: 1172 LTPKAEIEGEIGDSHMG----LAARMMSQAMRKL 1201
Score = 28.1 bits (61), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 66/154 (42%), Gaps = 17/154 (11%)
Query: 152 DYEAFESRMSTLNDILDALKNPDVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFV 211
D E + +L+ L A P ++ IYG GKTTL +V A+ E F+
Sbjct: 1408 DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREG--KTCAFI 1465
Query: 212 EVSQIQDIRKIQGEFADKLGL----TLHEETESG-RARSLCNRLKKEKRI-LVILDNIWE 265
+ D +A KLG+ L + ++G +A +C+ L + + ++++D++
Sbjct: 1466 DAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAA 1520
Query: 266 NLDFQAVGIPHGDGHKGSKVLLTARSLDVLSRKM 299
+ GD H G L AR + RK+
Sbjct: 1521 LTPKAEIEGEIGDSHMG----LAARMMSQAMRKL 1550
>pdb|2REC|A Chain A, Reca Hexamer Model, Electron Microscopy
pdb|2REC|B Chain B, Reca Hexamer Model, Electron Microscopy
pdb|2REC|C Chain C, Reca Hexamer Model, Electron Microscopy
pdb|2REC|D Chain D, Reca Hexamer Model, Electron Microscopy
pdb|2REC|E Chain E, Reca Hexamer Model, Electron Microscopy
pdb|2REC|F Chain F, Reca Hexamer Model, Electron Microscopy
Length = 353
Score = 28.1 bits (61), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 66/154 (42%), Gaps = 17/154 (11%)
Query: 152 DYEAFESRMSTLNDILDALKNPDVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFV 211
D E + +L+ L A P ++ IYG GKTTL +V A+ E F+
Sbjct: 37 DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREG--KTCAFI 94
Query: 212 EVSQIQDIRKIQGEFADKLGL----TLHEETESG-RARSLCNRLKKEKRI-LVILDNIWE 265
+ D +A KLG+ L + ++G +A +C+ L + + ++++D++
Sbjct: 95 DAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAA 149
Query: 266 NLDFQAVGIPHGDGHKGSKVLLTARSLDVLSRKM 299
+ GD H G L AR + RK+
Sbjct: 150 LTPKAEIEGEIGDSHMG----LAARMMSQAMRKL 179
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,012,938
Number of Sequences: 62578
Number of extensions: 440975
Number of successful extensions: 1650
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 1627
Number of HSP's gapped (non-prelim): 50
length of query: 395
length of database: 14,973,337
effective HSP length: 101
effective length of query: 294
effective length of database: 8,652,959
effective search space: 2543969946
effective search space used: 2543969946
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)