Query 047930
Match_columns 395
No_of_seqs 310 out of 2473
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 04:42:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047930.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047930hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 2.2E-50 4.8E-55 411.8 33.7 356 37-395 24-405 (889)
2 PF00931 NB-ARC: NB-ARC domain 100.0 2.3E-38 5E-43 291.8 15.2 235 159-395 1-244 (287)
3 PLN03210 Resistant to P. syrin 100.0 1.9E-31 4.1E-36 285.8 24.4 232 151-395 181-430 (1153)
4 TIGR03015 pepcterm_ATPase puta 99.5 3.2E-12 6.9E-17 116.6 24.0 198 172-372 40-266 (269)
5 PF01637 Arch_ATPase: Archaeal 99.5 4.4E-13 9.6E-18 119.3 12.4 194 156-352 1-233 (234)
6 PRK00411 cdc6 cell division co 99.4 3.6E-11 7.8E-16 115.8 20.0 215 154-372 30-282 (394)
7 PF05729 NACHT: NACHT domain 99.4 7E-12 1.5E-16 105.4 12.3 144 176-324 1-164 (166)
8 TIGR02928 orc1/cdc6 family rep 99.3 3E-10 6.4E-15 108.4 20.5 219 154-372 15-274 (365)
9 PRK04841 transcriptional regul 99.3 6.3E-11 1.4E-15 126.3 16.9 193 154-359 14-231 (903)
10 TIGR00635 ruvB Holliday juncti 99.2 1.7E-09 3.7E-14 100.5 16.9 205 153-372 3-229 (305)
11 COG2256 MGS1 ATPase related to 99.1 7.9E-10 1.7E-14 101.3 13.6 179 150-353 20-212 (436)
12 PRK13342 recombination factor 99.1 7.5E-10 1.6E-14 106.9 14.2 196 150-371 8-218 (413)
13 PRK00080 ruvB Holliday junctio 99.1 5.8E-09 1.3E-13 97.8 17.6 193 150-356 21-225 (328)
14 PRK07003 DNA polymerase III su 99.1 7.6E-09 1.7E-13 103.2 18.8 182 150-353 12-221 (830)
15 PRK06893 DNA replication initi 99.0 4.5E-09 9.7E-14 93.2 13.1 154 174-356 38-206 (229)
16 PRK12402 replication factor C 99.0 1.1E-08 2.5E-13 96.3 16.5 203 150-354 11-227 (337)
17 PRK14949 DNA polymerase III su 99.0 1.1E-08 2.5E-13 103.9 15.8 186 150-353 12-220 (944)
18 PRK14961 DNA polymerase III su 99.0 4.8E-08 1E-12 92.7 19.2 195 150-352 12-219 (363)
19 PF13173 AAA_14: AAA domain 99.0 2.3E-09 5.1E-14 86.0 8.4 121 175-315 2-127 (128)
20 PRK12323 DNA polymerase III su 99.0 1.4E-08 3E-13 100.0 15.2 201 150-353 12-225 (700)
21 PRK05564 DNA polymerase III su 99.0 2.7E-08 5.8E-13 92.6 16.5 176 154-351 4-188 (313)
22 PLN03025 replication factor C 99.0 2.2E-08 4.7E-13 93.5 15.7 187 149-351 8-198 (319)
23 PRK00440 rfc replication facto 98.9 5.2E-08 1.1E-12 91.1 17.7 186 150-352 13-202 (319)
24 TIGR03420 DnaA_homol_Hda DnaA 98.9 1.5E-08 3.2E-13 89.9 13.0 169 159-355 22-203 (226)
25 COG1474 CDC6 Cdc6-related prot 98.9 1.5E-07 3.2E-12 88.6 19.7 197 156-353 19-238 (366)
26 PRK14963 DNA polymerase III su 98.9 6E-08 1.3E-12 95.1 17.4 198 150-351 10-215 (504)
27 PF13401 AAA_22: AAA domain; P 98.9 6.7E-09 1.4E-13 83.6 9.0 116 174-291 3-125 (131)
28 PRK14960 DNA polymerase III su 98.9 3.6E-08 7.7E-13 97.5 15.5 196 150-353 11-219 (702)
29 COG2909 MalT ATP-dependent tra 98.9 6E-08 1.3E-12 96.8 17.1 196 153-358 18-238 (894)
30 PRK06645 DNA polymerase III su 98.9 9.7E-08 2.1E-12 93.4 18.0 198 150-352 17-228 (507)
31 KOG2028 ATPase related to the 98.9 2.2E-08 4.7E-13 90.6 12.0 175 153-348 137-331 (554)
32 PRK07994 DNA polymerase III su 98.9 5.3E-08 1.1E-12 97.3 14.8 196 150-353 12-220 (647)
33 PRK04195 replication factor C 98.9 9E-08 1.9E-12 94.3 16.3 186 149-357 9-206 (482)
34 PRK14962 DNA polymerase III su 98.8 1.4E-07 3E-12 91.9 17.1 202 150-369 10-239 (472)
35 PRK14951 DNA polymerase III su 98.8 1E-07 2.2E-12 95.1 16.3 199 150-353 12-225 (618)
36 PRK14957 DNA polymerase III su 98.8 1.3E-07 2.8E-12 93.1 16.8 186 150-353 12-221 (546)
37 PRK14956 DNA polymerase III su 98.8 6E-08 1.3E-12 93.2 14.1 196 150-353 14-222 (484)
38 PRK14958 DNA polymerase III su 98.8 8.5E-08 1.8E-12 94.3 15.2 186 150-353 12-220 (509)
39 PRK09112 DNA polymerase III su 98.8 2.5E-07 5.4E-12 86.8 17.3 199 150-354 19-241 (351)
40 PTZ00112 origin recognition co 98.8 2.7E-07 5.8E-12 93.1 16.9 219 154-372 755-1006(1164)
41 TIGR02903 spore_lon_C ATP-depe 98.8 1.9E-07 4E-12 94.2 16.1 204 151-356 151-398 (615)
42 cd00009 AAA The AAA+ (ATPases 98.8 8.2E-08 1.8E-12 78.4 11.2 121 158-292 2-130 (151)
43 PRK07940 DNA polymerase III su 98.8 3.7E-07 7.9E-12 86.9 16.8 170 154-351 5-211 (394)
44 PRK08691 DNA polymerase III su 98.8 1.9E-07 4.1E-12 93.2 15.4 183 150-354 12-221 (709)
45 PRK14964 DNA polymerase III su 98.8 3.5E-07 7.5E-12 88.9 16.8 185 150-352 9-216 (491)
46 PRK05896 DNA polymerase III su 98.8 2.3E-07 5E-12 91.6 15.7 197 150-354 12-222 (605)
47 TIGR02397 dnaX_nterm DNA polym 98.8 5.8E-07 1.3E-11 85.4 18.1 186 150-354 10-219 (355)
48 PRK07471 DNA polymerase III su 98.7 6.4E-07 1.4E-11 84.5 17.6 198 150-353 15-238 (365)
49 TIGR00678 holB DNA polymerase 98.7 5.1E-07 1.1E-11 77.6 15.6 159 166-349 4-187 (188)
50 COG3899 Predicted ATPase [Gene 98.7 1.4E-07 3E-12 98.4 14.0 202 156-359 2-266 (849)
51 PRK07764 DNA polymerase III su 98.7 3.5E-07 7.5E-12 94.5 16.7 193 150-350 11-218 (824)
52 PTZ00202 tuzin; Provisional 98.7 3.9E-07 8.4E-12 85.5 15.3 164 149-323 257-434 (550)
53 PRK14969 DNA polymerase III su 98.7 3.1E-07 6.7E-12 90.9 15.7 179 150-350 12-217 (527)
54 PRK13341 recombination factor 98.7 2.7E-07 5.9E-12 94.1 15.3 176 150-351 24-215 (725)
55 PRK14955 DNA polymerase III su 98.7 3E-07 6.4E-12 88.3 14.7 202 150-352 12-227 (397)
56 cd01128 rho_factor Transcripti 98.7 4.7E-08 1E-12 87.1 8.3 90 175-265 16-114 (249)
57 TIGR01242 26Sp45 26S proteasom 98.7 9.1E-07 2E-11 84.2 16.8 175 151-347 119-328 (364)
58 PRK14970 DNA polymerase III su 98.7 9.8E-07 2.1E-11 84.2 17.0 183 150-350 13-206 (367)
59 PRK09111 DNA polymerase III su 98.7 8.3E-07 1.8E-11 88.8 16.5 200 150-354 20-234 (598)
60 PF13191 AAA_16: AAA ATPase do 98.7 9.1E-08 2E-12 81.8 8.5 48 155-202 1-51 (185)
61 PRK14952 DNA polymerase III su 98.7 1.2E-06 2.6E-11 87.1 17.3 191 150-348 9-214 (584)
62 PRK14959 DNA polymerase III su 98.7 7.9E-07 1.7E-11 88.3 15.8 200 150-357 12-225 (624)
63 PRK09087 hypothetical protein; 98.7 1.4E-06 3E-11 76.9 15.7 159 175-372 44-222 (226)
64 KOG2227 Pre-initiation complex 98.6 3.1E-06 6.6E-11 79.5 18.0 206 153-358 149-373 (529)
65 PF05496 RuvB_N: Holliday junc 98.6 2.2E-06 4.7E-11 73.9 15.8 178 150-356 20-224 (233)
66 PRK14950 DNA polymerase III su 98.6 2.1E-06 4.5E-11 86.5 17.9 197 150-353 12-221 (585)
67 PRK08084 DNA replication initi 98.6 9.8E-07 2.1E-11 78.5 13.5 167 161-356 31-212 (235)
68 PRK08451 DNA polymerase III su 98.6 2.4E-06 5.1E-11 83.9 17.2 182 150-353 10-218 (535)
69 PRK14954 DNA polymerase III su 98.6 1.9E-06 4.2E-11 86.3 16.9 200 150-350 12-225 (620)
70 PF14516 AAA_35: AAA-like doma 98.6 5.8E-06 1.3E-10 77.4 19.1 200 152-359 9-245 (331)
71 KOG0989 Replication factor C, 98.6 4.9E-07 1.1E-11 80.4 10.6 186 148-348 30-225 (346)
72 PRK14971 DNA polymerase III su 98.6 3.1E-06 6.7E-11 85.2 17.8 184 151-353 14-222 (614)
73 PRK08727 hypothetical protein; 98.6 1.1E-06 2.3E-11 78.2 12.8 171 153-351 18-202 (233)
74 PRK07133 DNA polymerase III su 98.6 2.8E-06 6E-11 85.8 16.7 188 150-350 14-216 (725)
75 PRK09376 rho transcription ter 98.6 2E-07 4.3E-12 86.8 8.0 89 176-265 170-267 (416)
76 PRK03992 proteasome-activating 98.6 1E-06 2.2E-11 84.4 13.1 204 152-377 129-377 (389)
77 PRK14953 DNA polymerase III su 98.6 4.7E-06 1E-10 81.7 17.9 183 150-354 12-221 (486)
78 PRK08903 DnaA regulatory inact 98.5 1.7E-06 3.6E-11 76.8 13.2 163 163-357 29-203 (227)
79 TIGR03345 VI_ClpV1 type VI sec 98.5 9.7E-07 2.1E-11 92.2 13.3 183 151-347 184-390 (852)
80 PHA02544 44 clamp loader, smal 98.5 1.5E-06 3.3E-11 81.1 13.4 150 149-321 16-171 (316)
81 PF05621 TniB: Bacterial TniB 98.5 7.9E-06 1.7E-10 73.6 16.6 194 161-354 44-262 (302)
82 COG3903 Predicted ATPase [Gene 98.5 2.2E-07 4.8E-12 86.0 6.6 210 175-395 14-234 (414)
83 PRK06305 DNA polymerase III su 98.5 6.3E-06 1.4E-10 80.2 16.7 175 151-348 14-217 (451)
84 PRK14965 DNA polymerase III su 98.5 3.6E-06 7.8E-11 84.5 15.3 196 150-353 12-221 (576)
85 PRK14948 DNA polymerase III su 98.5 8.5E-06 1.9E-10 82.1 17.7 196 151-352 13-221 (620)
86 PRK05563 DNA polymerase III su 98.4 1.1E-05 2.3E-10 80.7 17.7 194 150-351 12-218 (559)
87 KOG0991 Replication factor C, 98.4 2.1E-06 4.5E-11 73.4 10.2 106 147-266 20-125 (333)
88 TIGR02639 ClpA ATP-dependent C 98.4 1.7E-06 3.8E-11 89.5 11.5 160 151-323 179-358 (731)
89 PRK06647 DNA polymerase III su 98.4 1.5E-05 3.3E-10 79.4 17.6 196 150-353 12-220 (563)
90 CHL00095 clpC Clp protease ATP 98.4 4.4E-06 9.5E-11 87.6 14.4 158 153-323 178-354 (821)
91 TIGR02881 spore_V_K stage V sp 98.4 4.4E-06 9.6E-11 75.7 12.6 135 174-324 41-192 (261)
92 TIGR00767 rho transcription te 98.4 1.6E-06 3.5E-11 81.3 9.6 90 175-265 168-266 (415)
93 PRK05642 DNA replication initi 98.4 9.9E-06 2.1E-10 72.0 14.1 154 176-357 46-212 (234)
94 PRK14087 dnaA chromosomal repl 98.4 6.6E-06 1.4E-10 80.0 13.8 184 176-373 142-349 (450)
95 PF00308 Bac_DnaA: Bacterial d 98.3 6E-06 1.3E-10 72.5 11.7 163 175-354 34-209 (219)
96 COG1373 Predicted ATPase (AAA+ 98.3 1.8E-05 3.8E-10 75.9 15.0 135 159-317 22-161 (398)
97 PRK07399 DNA polymerase III su 98.3 3.8E-05 8.1E-10 71.2 16.6 196 154-354 4-222 (314)
98 TIGR02880 cbbX_cfxQ probable R 98.3 2.1E-05 4.5E-10 72.0 14.7 132 177-324 60-209 (284)
99 PRK05707 DNA polymerase III su 98.3 3.8E-05 8.1E-10 71.6 16.4 167 175-353 22-203 (328)
100 CHL00181 cbbX CbbX; Provisiona 98.3 2.5E-05 5.5E-10 71.4 15.1 133 176-324 60-210 (287)
101 PTZ00454 26S protease regulato 98.3 1.6E-05 3.5E-10 75.9 14.2 199 152-372 143-386 (398)
102 KOG2543 Origin recognition com 98.3 6.1E-05 1.3E-09 69.2 16.7 196 154-356 6-229 (438)
103 TIGR01241 FtsH_fam ATP-depende 98.3 2.2E-05 4.7E-10 77.9 15.0 201 151-373 52-296 (495)
104 TIGR00362 DnaA chromosomal rep 98.3 5.3E-05 1.2E-09 73.2 17.1 181 176-373 137-338 (405)
105 TIGR03689 pup_AAA proteasome A 98.2 2.7E-05 5.8E-10 76.2 14.2 161 152-325 180-380 (512)
106 PF05673 DUF815: Protein of un 98.2 0.0001 2.2E-09 64.5 15.7 100 151-276 24-131 (249)
107 TIGR03346 chaperone_ClpB ATP-d 98.2 2.9E-05 6.2E-10 81.8 14.4 158 152-323 171-349 (852)
108 PRK11331 5-methylcytosine-spec 98.2 1.2E-05 2.6E-10 76.7 10.5 108 154-266 175-284 (459)
109 COG2255 RuvB Holliday junction 98.2 6.6E-05 1.4E-09 66.4 14.1 196 150-374 22-253 (332)
110 PF00004 AAA: ATPase family as 98.2 9.2E-06 2E-10 65.1 8.2 69 178-266 1-70 (132)
111 PRK10865 protein disaggregatio 98.2 1.7E-05 3.7E-10 83.3 12.2 159 151-323 175-354 (857)
112 PRK00149 dnaA chromosomal repl 98.2 8.2E-05 1.8E-09 72.9 16.3 181 176-373 149-350 (450)
113 PRK08769 DNA polymerase III su 98.2 0.00012 2.7E-09 67.6 16.3 173 162-353 12-208 (319)
114 TIGR00602 rad24 checkpoint pro 98.2 1.2E-05 2.6E-10 80.7 10.2 203 148-357 78-327 (637)
115 PRK14088 dnaA chromosomal repl 98.1 5.1E-05 1.1E-09 73.8 14.2 181 176-372 131-332 (440)
116 PTZ00361 26 proteosome regulat 98.1 3.7E-05 8.1E-10 74.1 13.0 200 152-373 181-425 (438)
117 PRK06090 DNA polymerase III su 98.1 0.00037 8E-09 64.4 18.9 174 163-353 12-201 (319)
118 COG1222 RPT1 ATP-dependent 26S 98.1 0.00014 3.1E-09 66.4 15.7 200 151-374 148-394 (406)
119 CHL00176 ftsH cell division pr 98.1 7.3E-05 1.6E-09 75.6 15.4 197 154-372 183-423 (638)
120 PRK11034 clpA ATP-dependent Cl 98.1 1.3E-05 2.8E-10 82.5 9.6 158 153-323 185-362 (758)
121 PRK06871 DNA polymerase III su 98.1 0.00024 5.2E-09 65.9 17.0 175 163-350 11-200 (325)
122 smart00382 AAA ATPases associa 98.1 1.8E-05 4E-10 63.7 8.7 90 176-268 3-92 (148)
123 PRK06620 hypothetical protein; 98.1 2.8E-05 6.2E-10 67.9 10.3 137 176-353 45-189 (214)
124 PRK08058 DNA polymerase III su 98.1 0.00014 3E-09 68.1 15.5 160 156-322 7-181 (329)
125 COG3267 ExeA Type II secretory 98.1 0.00038 8.3E-09 60.8 16.4 180 172-356 48-248 (269)
126 PF13177 DNA_pol3_delta2: DNA 98.0 6.2E-05 1.3E-09 62.8 11.0 137 158-311 1-162 (162)
127 COG2812 DnaX DNA polymerase II 98.0 6.6E-05 1.4E-09 73.1 12.4 189 150-346 12-213 (515)
128 PRK14086 dnaA chromosomal repl 98.0 0.00016 3.5E-09 71.9 14.9 182 176-374 315-517 (617)
129 COG0466 Lon ATP-dependent Lon 98.0 7.3E-05 1.6E-09 74.1 12.1 155 155-323 324-508 (782)
130 TIGR02640 gas_vesic_GvpN gas v 98.0 0.00028 6E-09 63.9 14.9 154 161-323 9-198 (262)
131 PRK10536 hypothetical protein; 98.0 0.00013 2.9E-09 64.6 12.1 56 152-209 53-108 (262)
132 KOG2004 Mitochondrial ATP-depe 98.0 0.00055 1.2E-08 67.9 17.2 156 154-323 411-596 (906)
133 CHL00195 ycf46 Ycf46; Provisio 97.9 0.00014 3E-09 71.2 12.7 155 174-348 258-430 (489)
134 PF10443 RNA12: RNA12 protein; 97.9 0.0017 3.7E-08 61.4 18.6 191 159-359 1-284 (431)
135 PRK04132 replication factor C 97.9 0.00042 9.1E-09 71.7 15.8 155 183-353 574-731 (846)
136 KOG0733 Nuclear AAA ATPase (VC 97.9 0.00039 8.4E-09 67.7 14.2 172 153-346 189-395 (802)
137 PRK08116 hypothetical protein; 97.8 7.4E-05 1.6E-09 67.7 8.6 101 176-291 115-220 (268)
138 PRK12422 chromosomal replicati 97.8 0.00039 8.4E-09 67.6 14.0 178 176-372 142-343 (445)
139 COG1223 Predicted ATPase (AAA+ 97.8 0.00031 6.6E-09 61.4 11.5 172 153-346 120-318 (368)
140 PRK07993 DNA polymerase III su 97.8 0.00078 1.7E-08 63.0 15.3 175 163-350 11-201 (334)
141 PRK10787 DNA-binding ATP-depen 97.8 0.00032 7E-09 72.8 13.9 158 154-323 322-506 (784)
142 PRK06964 DNA polymerase III su 97.8 0.0017 3.6E-08 60.8 17.2 101 242-351 116-223 (342)
143 KOG0731 AAA+-type ATPase conta 97.8 0.00054 1.2E-08 69.2 14.3 191 160-372 320-553 (774)
144 TIGR00763 lon ATP-dependent pr 97.8 0.00052 1.1E-08 71.8 14.6 157 155-323 321-505 (775)
145 TIGR02902 spore_lonB ATP-depen 97.8 0.00022 4.7E-09 71.1 11.0 49 151-199 62-110 (531)
146 PRK08118 topology modulation p 97.7 1.9E-05 4.1E-10 66.3 3.0 34 177-210 3-37 (167)
147 KOG2035 Replication factor C, 97.7 0.0015 3.4E-08 57.7 14.6 207 153-373 12-259 (351)
148 TIGR01243 CDC48 AAA family ATP 97.7 0.0004 8.7E-09 72.3 12.9 175 152-348 176-382 (733)
149 TIGR03345 VI_ClpV1 type VI sec 97.7 0.00042 9.1E-09 72.8 12.9 46 155-200 567-621 (852)
150 PHA00729 NTP-binding motif con 97.7 0.00041 8.9E-09 60.4 10.5 35 165-199 7-41 (226)
151 KOG0730 AAA+-type ATPase [Post 97.7 0.00088 1.9E-08 66.0 13.5 151 173-346 466-636 (693)
152 PF04665 Pox_A32: Poxvirus A32 97.7 8.9E-05 1.9E-09 65.3 6.1 35 177-213 15-49 (241)
153 PRK12608 transcription termina 97.6 0.00042 9.1E-09 64.8 10.5 100 164-264 121-230 (380)
154 TIGR01243 CDC48 AAA family ATP 97.6 0.0011 2.5E-08 69.0 14.8 151 175-347 487-657 (733)
155 PRK07261 topology modulation p 97.6 0.00026 5.7E-09 59.7 8.1 34 177-210 2-36 (171)
156 COG0593 DnaA ATPase involved i 97.6 0.0013 2.8E-08 62.3 13.4 181 175-377 113-318 (408)
157 TIGR02639 ClpA ATP-dependent C 97.6 0.00067 1.5E-08 70.5 12.6 101 156-266 456-565 (731)
158 COG0470 HolB ATPase involved i 97.6 0.00079 1.7E-08 63.0 12.0 140 157-312 4-170 (325)
159 KOG1969 DNA replication checkp 97.6 0.00026 5.6E-09 70.3 8.7 75 174-266 325-399 (877)
160 PLN00020 ribulose bisphosphate 97.6 0.0008 1.7E-08 62.5 11.2 29 173-201 146-174 (413)
161 PRK08939 primosomal protein Dn 97.6 0.00034 7.4E-09 64.5 8.6 116 158-291 135-260 (306)
162 PRK12377 putative replication 97.6 0.0003 6.6E-09 62.7 8.0 74 175-265 101-174 (248)
163 KOG0733 Nuclear AAA ATPase (VC 97.5 0.0029 6.3E-08 61.9 14.6 131 175-325 545-694 (802)
164 KOG0734 AAA+-type ATPase conta 97.5 0.00036 7.8E-09 66.9 8.3 88 159-266 312-408 (752)
165 PRK08181 transposase; Validate 97.5 0.00022 4.8E-09 64.4 6.6 105 168-292 101-209 (269)
166 COG2607 Predicted ATPase (AAA+ 97.5 0.0032 6.9E-08 54.6 12.9 115 152-292 58-183 (287)
167 COG0542 clpA ATP-binding subun 97.5 0.00036 7.7E-09 71.0 8.4 161 151-323 167-346 (786)
168 TIGR02237 recomb_radB DNA repa 97.5 0.00073 1.6E-08 58.9 9.4 86 175-264 12-107 (209)
169 PRK08699 DNA polymerase III su 97.5 0.0021 4.6E-08 59.9 12.7 89 253-350 112-203 (325)
170 KOG0741 AAA+-type ATPase [Post 97.5 0.0046 9.9E-08 59.5 14.8 161 174-358 537-717 (744)
171 KOG0735 AAA+-type ATPase [Post 97.4 0.0017 3.8E-08 64.4 12.1 151 175-346 431-608 (952)
172 cd01123 Rad51_DMC1_radA Rad51_ 97.4 0.00085 1.9E-08 59.7 9.2 90 175-265 19-126 (235)
173 PRK06526 transposase; Provisio 97.4 0.00023 4.9E-09 63.9 5.4 74 175-266 98-171 (254)
174 PF01695 IstB_IS21: IstB-like 97.4 0.00026 5.7E-09 60.0 5.5 74 175-266 47-120 (178)
175 PRK10733 hflB ATP-dependent me 97.4 0.0022 4.7E-08 65.6 12.8 149 176-346 186-356 (644)
176 PRK11034 clpA ATP-dependent Cl 97.4 0.0016 3.6E-08 67.2 11.5 101 156-266 460-569 (758)
177 KOG0739 AAA+-type ATPase [Post 97.4 0.004 8.8E-08 55.7 12.2 151 175-347 166-335 (439)
178 COG0542 clpA ATP-binding subun 97.4 0.0056 1.2E-07 62.5 14.9 101 156-266 493-605 (786)
179 PRK06921 hypothetical protein; 97.4 0.00068 1.5E-08 61.4 7.7 71 174-263 116-186 (266)
180 PF03215 Rad17: Rad17 cell cyc 97.4 0.0014 3.1E-08 64.7 10.5 60 150-213 15-79 (519)
181 PF00448 SRP54: SRP54-type pro 97.4 0.0012 2.7E-08 56.8 8.9 87 175-263 1-92 (196)
182 KOG0743 AAA+-type ATPase [Post 97.3 0.0073 1.6E-07 57.3 14.5 153 176-360 236-417 (457)
183 PF13207 AAA_17: AAA domain; P 97.3 0.00021 4.5E-09 56.4 3.7 23 177-199 1-23 (121)
184 COG1484 DnaC DNA replication p 97.3 0.0016 3.5E-08 58.5 9.7 81 166-265 98-178 (254)
185 PRK10865 protein disaggregatio 97.3 0.00095 2.1E-08 70.3 9.4 105 155-266 569-682 (857)
186 PRK09183 transposase/IS protei 97.3 0.00077 1.7E-08 60.8 7.5 25 176-200 103-127 (259)
187 KOG0744 AAA+-type ATPase [Post 97.3 0.0026 5.6E-08 57.5 10.5 28 175-202 177-204 (423)
188 TIGR03346 chaperone_ClpB ATP-d 97.3 0.001 2.2E-08 70.3 9.3 105 155-266 566-679 (852)
189 PF02562 PhoH: PhoH-like prote 97.3 0.00023 5E-09 61.2 3.7 48 163-212 9-56 (205)
190 PF07693 KAP_NTPase: KAP famil 97.3 0.034 7.3E-07 52.0 18.4 40 163-202 5-47 (325)
191 KOG0736 Peroxisome assembly fa 97.3 0.02 4.2E-07 57.8 16.9 94 153-266 671-776 (953)
192 KOG2228 Origin recognition com 97.2 0.0074 1.6E-07 55.0 12.5 168 154-323 24-219 (408)
193 PRK14722 flhF flagellar biosyn 97.2 0.0025 5.4E-08 60.1 9.9 88 175-264 137-225 (374)
194 PF05659 RPW8: Arabidopsis bro 97.2 0.0058 1.3E-07 49.7 10.8 110 2-127 3-113 (147)
195 smart00763 AAA_PrkA PrkA AAA d 97.2 0.00054 1.2E-08 63.8 5.3 47 155-201 52-104 (361)
196 PRK07952 DNA replication prote 97.2 0.0038 8.3E-08 55.6 10.2 76 175-266 99-174 (244)
197 CHL00095 clpC Clp protease ATP 97.2 0.0023 5E-08 67.4 10.2 105 155-266 510-623 (821)
198 TIGR03499 FlhF flagellar biosy 97.1 0.0027 5.8E-08 58.1 9.3 88 174-263 193-281 (282)
199 PRK06696 uridine kinase; Valid 97.1 0.0008 1.7E-08 59.4 5.7 43 158-200 2-47 (223)
200 PRK07132 DNA polymerase III su 97.1 0.035 7.5E-07 51.0 16.3 143 164-322 6-161 (299)
201 cd01393 recA_like RecA is a b 97.1 0.0028 6.2E-08 55.9 9.1 48 175-222 19-70 (226)
202 COG0464 SpoVK ATPases of the A 97.1 0.006 1.3E-07 60.7 12.2 152 174-345 275-445 (494)
203 KOG0735 AAA+-type ATPase [Post 97.1 0.044 9.5E-07 54.9 17.5 150 175-349 701-872 (952)
204 KOG0728 26S proteasome regulat 97.1 0.013 2.7E-07 51.2 12.2 179 173-371 179-387 (404)
205 TIGR02012 tigrfam_recA protein 97.1 0.0022 4.7E-08 59.3 8.2 85 174-265 54-144 (321)
206 COG0194 Gmk Guanylate kinase [ 97.1 0.0041 8.9E-08 52.0 8.7 24 176-199 5-28 (191)
207 cd01120 RecA-like_NTPases RecA 97.1 0.0046 9.9E-08 51.1 9.3 39 177-217 1-39 (165)
208 TIGR02238 recomb_DMC1 meiotic 97.0 0.0039 8.4E-08 57.8 9.4 89 175-264 96-201 (313)
209 KOG1514 Origin recognition com 97.0 0.049 1.1E-06 54.5 17.3 198 156-356 398-624 (767)
210 COG1066 Sms Predicted ATP-depe 97.0 0.0052 1.1E-07 57.6 9.8 85 175-265 93-179 (456)
211 PRK09354 recA recombinase A; P 97.0 0.0029 6.3E-08 59.0 8.2 85 174-265 59-149 (349)
212 PF08423 Rad51: Rad51; InterP 97.0 0.007 1.5E-07 54.5 10.5 90 175-265 38-144 (256)
213 PRK09361 radB DNA repair and r 97.0 0.0039 8.4E-08 55.1 8.8 45 175-222 23-67 (225)
214 cd00983 recA RecA is a bacter 97.0 0.0027 5.9E-08 58.7 7.9 84 174-264 54-143 (325)
215 PRK06835 DNA replication prote 97.0 0.0025 5.3E-08 59.4 7.7 100 176-291 184-288 (329)
216 PRK05541 adenylylsulfate kinas 97.0 0.0027 5.9E-08 53.7 7.4 36 174-211 6-41 (176)
217 PHA02244 ATPase-like protein 97.0 0.012 2.6E-07 55.1 11.8 35 164-200 110-144 (383)
218 PRK08533 flagellar accessory p 97.0 0.0066 1.4E-07 53.8 9.9 52 175-231 24-75 (230)
219 cd01133 F1-ATPase_beta F1 ATP 96.9 0.007 1.5E-07 54.5 9.8 89 176-265 70-174 (274)
220 COG2884 FtsE Predicted ATPase 96.9 0.0052 1.1E-07 51.5 8.1 26 176-201 29-54 (223)
221 PLN03187 meiotic recombination 96.9 0.0064 1.4E-07 56.9 9.7 89 175-264 126-231 (344)
222 TIGR02236 recomb_radA DNA repa 96.9 0.0082 1.8E-07 55.8 10.4 91 174-265 94-203 (310)
223 KOG0737 AAA+-type ATPase [Post 96.9 0.0068 1.5E-07 55.9 9.4 29 174-202 126-154 (386)
224 PRK09270 nucleoside triphospha 96.9 0.0084 1.8E-07 53.1 9.9 29 173-201 31-59 (229)
225 TIGR03877 thermo_KaiC_1 KaiC d 96.9 0.0088 1.9E-07 53.3 10.0 49 174-226 20-68 (237)
226 PRK04296 thymidine kinase; Pro 96.9 0.0016 3.5E-08 55.9 5.0 110 176-293 3-117 (190)
227 PRK12727 flagellar biosynthesi 96.9 0.0055 1.2E-07 60.0 9.2 88 175-264 350-438 (559)
228 TIGR01069 mutS2 MutS2 family p 96.9 0.0012 2.6E-08 68.5 5.0 184 174-374 321-522 (771)
229 TIGR00554 panK_bact pantothena 96.9 0.0075 1.6E-07 55.1 9.4 28 172-199 59-86 (290)
230 PRK06547 hypothetical protein; 96.8 0.0019 4.1E-08 54.4 5.1 35 166-200 6-40 (172)
231 cd02025 PanK Pantothenate kina 96.8 0.0066 1.4E-07 53.3 8.8 24 177-200 1-24 (220)
232 COG1102 Cmk Cytidylate kinase 96.8 0.0018 3.8E-08 52.7 4.6 46 177-235 2-47 (179)
233 TIGR02858 spore_III_AA stage I 96.8 0.0085 1.8E-07 54.2 9.6 123 165-294 100-231 (270)
234 PRK07667 uridine kinase; Provi 96.8 0.0019 4.2E-08 55.6 4.9 37 164-200 4-42 (193)
235 PF12775 AAA_7: P-loop contain 96.8 0.0011 2.5E-08 60.1 3.6 87 165-265 24-111 (272)
236 cd01121 Sms Sms (bacterial rad 96.8 0.0077 1.7E-07 57.2 9.3 86 175-265 82-169 (372)
237 cd01394 radB RadB. The archaea 96.8 0.0075 1.6E-07 53.0 8.7 43 174-218 18-60 (218)
238 COG1419 FlhF Flagellar GTP-bin 96.8 0.019 4.1E-07 54.1 11.5 99 162-263 186-290 (407)
239 cd01124 KaiC KaiC is a circadi 96.8 0.0069 1.5E-07 51.6 8.2 44 178-225 2-45 (187)
240 cd01131 PilT Pilus retraction 96.8 0.0033 7.2E-08 54.3 6.1 108 176-295 2-112 (198)
241 PF07728 AAA_5: AAA domain (dy 96.8 0.0037 8.1E-08 50.6 6.1 75 178-265 2-76 (139)
242 PF00154 RecA: recA bacterial 96.7 0.019 4E-07 53.1 11.1 85 175-266 53-143 (322)
243 PRK04301 radA DNA repair and r 96.7 0.013 2.8E-07 54.7 10.3 91 174-265 101-209 (317)
244 PRK05917 DNA polymerase III su 96.7 0.047 1E-06 49.7 13.5 128 163-311 6-155 (290)
245 KOG0738 AAA+-type ATPase [Post 96.7 0.022 4.7E-07 53.0 11.2 26 176-201 246-271 (491)
246 COG1875 NYN ribonuclease and A 96.7 0.0093 2E-07 55.0 8.8 41 157-197 227-267 (436)
247 PF13238 AAA_18: AAA domain; P 96.7 0.0015 3.3E-08 51.8 3.5 22 178-199 1-22 (129)
248 PRK12724 flagellar biosynthesi 96.7 0.0075 1.6E-07 57.5 8.4 85 174-262 222-307 (432)
249 PTZ00301 uridine kinase; Provi 96.7 0.0044 9.4E-08 53.9 6.4 25 175-199 3-27 (210)
250 PRK11889 flhF flagellar biosyn 96.7 0.012 2.5E-07 55.6 9.5 88 174-263 240-329 (436)
251 PRK15455 PrkA family serine pr 96.7 0.0023 4.9E-08 63.0 4.9 47 154-200 76-128 (644)
252 PRK12726 flagellar biosynthesi 96.7 0.016 3.4E-07 54.6 10.2 89 174-264 205-295 (407)
253 PRK15429 formate hydrogenlyase 96.7 0.036 7.9E-07 57.4 14.0 60 154-215 376-437 (686)
254 TIGR02239 recomb_RAD51 DNA rep 96.7 0.01 2.2E-07 55.1 9.0 91 174-265 95-202 (316)
255 PF00485 PRK: Phosphoribulokin 96.7 0.002 4.3E-08 55.5 4.1 25 177-201 1-25 (194)
256 TIGR01359 UMP_CMP_kin_fam UMP- 96.7 0.0052 1.1E-07 52.3 6.6 23 177-199 1-23 (183)
257 PRK05439 pantothenate kinase; 96.7 0.017 3.7E-07 53.2 10.2 28 173-200 84-111 (311)
258 PTZ00035 Rad51 protein; Provis 96.6 0.017 3.6E-07 54.3 10.3 90 175-265 118-224 (337)
259 cd03281 ABC_MSH5_euk MutS5 hom 96.6 0.0028 6E-08 55.4 4.9 24 175-198 29-52 (213)
260 COG0563 Adk Adenylate kinase a 96.6 0.0038 8.3E-08 52.8 5.5 24 177-200 2-25 (178)
261 COG0465 HflB ATP-dependent Zn 96.6 0.022 4.8E-07 56.6 11.4 202 154-377 150-395 (596)
262 PF13671 AAA_33: AAA domain; P 96.6 0.0021 4.6E-08 52.2 3.7 24 177-200 1-24 (143)
263 PRK00409 recombination and DNA 96.6 0.013 2.8E-07 61.2 10.2 181 174-374 326-527 (782)
264 PRK06067 flagellar accessory p 96.6 0.016 3.4E-07 51.5 9.6 86 174-264 24-130 (234)
265 PRK13531 regulatory ATPase Rav 96.6 0.0039 8.4E-08 60.5 5.9 50 155-206 21-70 (498)
266 PF00006 ATP-synt_ab: ATP synt 96.6 0.011 2.3E-07 51.6 8.1 85 176-264 16-115 (215)
267 PLN03186 DNA repair protein RA 96.6 0.012 2.6E-07 55.1 8.9 90 175-265 123-229 (342)
268 TIGR01817 nifA Nif-specific re 96.6 0.023 5E-07 57.1 11.7 49 152-200 194-244 (534)
269 PRK05480 uridine/cytidine kina 96.6 0.0024 5.1E-08 55.8 4.0 27 173-199 4-30 (209)
270 COG1618 Predicted nucleotide k 96.6 0.0031 6.8E-08 51.3 4.3 29 175-203 5-33 (179)
271 PRK08233 hypothetical protein; 96.6 0.0022 4.8E-08 54.5 3.7 26 175-200 3-28 (182)
272 PRK00771 signal recognition pa 96.6 0.014 3.1E-07 56.5 9.5 58 174-233 94-152 (437)
273 PRK04328 hypothetical protein; 96.6 0.014 3E-07 52.4 8.9 41 174-216 22-62 (249)
274 PRK05022 anaerobic nitric oxid 96.6 0.028 6.1E-07 56.1 11.9 61 154-216 187-249 (509)
275 cd00544 CobU Adenosylcobinamid 96.6 0.014 3E-07 48.9 8.3 80 178-263 2-82 (169)
276 cd02019 NK Nucleoside/nucleoti 96.5 0.0023 5E-08 44.9 3.0 23 177-199 1-23 (69)
277 PF13481 AAA_25: AAA domain; P 96.5 0.014 3E-07 50.0 8.5 50 176-227 33-90 (193)
278 PRK05703 flhF flagellar biosyn 96.5 0.013 2.7E-07 56.8 8.7 87 175-263 221-308 (424)
279 PRK06762 hypothetical protein; 96.5 0.0027 5.9E-08 53.1 3.6 25 175-199 2-26 (166)
280 PRK06217 hypothetical protein; 96.5 0.016 3.5E-07 49.4 8.4 25 177-201 3-27 (183)
281 cd00561 CobA_CobO_BtuR ATP:cor 96.5 0.014 3E-07 48.2 7.6 115 176-293 3-139 (159)
282 cd03115 SRP The signal recogni 96.5 0.016 3.4E-07 48.9 8.2 25 177-201 2-26 (173)
283 CHL00206 ycf2 Ycf2; Provisiona 96.5 0.041 8.9E-07 61.2 13.0 27 175-201 1630-1656(2281)
284 PRK14721 flhF flagellar biosyn 96.5 0.025 5.4E-07 54.4 10.3 25 175-199 191-215 (420)
285 TIGR00235 udk uridine kinase. 96.4 0.003 6.4E-08 55.1 3.8 28 173-200 4-31 (207)
286 PRK14974 cell division protein 96.4 0.021 4.6E-07 53.3 9.6 57 174-233 139-197 (336)
287 PF10236 DAP3: Mitochondrial r 96.4 0.32 6.8E-06 45.2 17.3 47 304-350 258-306 (309)
288 PF14532 Sigma54_activ_2: Sigm 96.4 0.0017 3.6E-08 52.6 2.0 43 158-200 2-46 (138)
289 TIGR02655 circ_KaiC circadian 96.4 0.018 3.8E-07 57.1 9.4 87 174-265 262-364 (484)
290 PRK14723 flhF flagellar biosyn 96.4 0.031 6.7E-07 57.5 11.2 25 175-199 185-209 (767)
291 TIGR00708 cobA cob(I)alamin ad 96.4 0.024 5.2E-07 47.4 8.7 115 175-292 5-140 (173)
292 cd01135 V_A-ATPase_B V/A-type 96.4 0.024 5.2E-07 51.0 9.2 90 176-265 70-177 (276)
293 cd03214 ABC_Iron-Siderophores_ 96.4 0.021 4.7E-07 48.4 8.7 114 176-294 26-160 (180)
294 COG4608 AppF ABC-type oligopep 96.4 0.02 4.3E-07 51.0 8.5 118 174-296 38-174 (268)
295 PRK12723 flagellar biosynthesi 96.4 0.021 4.6E-07 54.4 9.4 89 174-264 173-264 (388)
296 cd03216 ABC_Carb_Monos_I This 96.4 0.0068 1.5E-07 50.6 5.5 111 176-294 27-144 (163)
297 TIGR02974 phageshock_pspF psp 96.4 0.016 3.4E-07 54.3 8.4 44 157-200 2-47 (329)
298 cd03247 ABCC_cytochrome_bd The 96.4 0.013 2.8E-07 49.6 7.2 24 176-199 29-52 (178)
299 PRK06995 flhF flagellar biosyn 96.4 0.023 5E-07 55.5 9.7 59 175-233 256-315 (484)
300 cd03222 ABC_RNaseL_inhibitor T 96.4 0.0092 2E-07 50.5 6.1 25 175-199 25-49 (177)
301 PF01583 APS_kinase: Adenylyls 96.3 0.0053 1.2E-07 50.4 4.5 36 175-212 2-37 (156)
302 PF03308 ArgK: ArgK protein; 96.3 0.011 2.4E-07 52.3 6.6 61 163-223 15-77 (266)
303 PF12061 DUF3542: Protein of u 96.3 0.021 4.5E-07 51.4 8.3 91 31-125 311-401 (402)
304 COG1428 Deoxynucleoside kinase 96.3 0.0094 2E-07 50.9 5.9 48 175-227 4-51 (216)
305 PRK11823 DNA repair protein Ra 96.3 0.017 3.8E-07 56.3 8.5 85 175-264 80-166 (446)
306 PF03205 MobB: Molybdopterin g 96.3 0.0046 9.9E-08 50.1 3.7 39 176-215 1-39 (140)
307 smart00534 MUTSac ATPase domai 96.3 0.0021 4.6E-08 54.9 1.9 21 177-197 1-21 (185)
308 COG1703 ArgK Putative periplas 96.3 0.0065 1.4E-07 54.6 4.9 61 165-225 39-101 (323)
309 PRK14527 adenylate kinase; Pro 96.3 0.019 4.2E-07 49.2 7.8 28 173-200 4-31 (191)
310 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.3 0.015 3.2E-07 47.5 6.7 24 176-199 27-50 (144)
311 PF06309 Torsin: Torsin; Inte 96.3 0.057 1.2E-06 42.4 9.5 27 173-199 51-77 (127)
312 TIGR03878 thermo_KaiC_2 KaiC d 96.3 0.029 6.3E-07 50.7 9.2 40 174-215 35-74 (259)
313 TIGR01360 aden_kin_iso1 adenyl 96.2 0.0043 9.2E-08 53.0 3.6 26 174-199 2-27 (188)
314 PRK03839 putative kinase; Prov 96.2 0.004 8.7E-08 52.9 3.4 24 177-200 2-25 (180)
315 COG0468 RecA RecA/RadA recombi 96.2 0.038 8.3E-07 50.0 9.8 90 174-266 59-153 (279)
316 TIGR00064 ftsY signal recognit 96.2 0.035 7.5E-07 50.5 9.6 56 173-231 70-127 (272)
317 PTZ00494 tuzin-like protein; P 96.2 0.1 2.2E-06 49.9 12.7 162 152-323 369-544 (664)
318 PRK00131 aroK shikimate kinase 96.2 0.0046 1E-07 52.0 3.7 27 174-200 3-29 (175)
319 COG0572 Udk Uridine kinase [Nu 96.2 0.0049 1.1E-07 53.2 3.8 28 174-201 7-34 (218)
320 PRK10867 signal recognition pa 96.2 0.033 7.1E-07 53.9 9.8 28 173-200 98-125 (433)
321 COG4088 Predicted nucleotide k 96.2 0.0037 8E-08 53.0 2.9 27 176-202 2-28 (261)
322 PRK12597 F0F1 ATP synthase sub 96.2 0.022 4.7E-07 55.4 8.5 88 176-264 144-247 (461)
323 TIGR00959 ffh signal recogniti 96.2 0.038 8.2E-07 53.4 10.1 26 174-199 98-123 (428)
324 PRK06002 fliI flagellum-specif 96.2 0.018 3.9E-07 55.5 7.8 87 176-265 166-265 (450)
325 PF13086 AAA_11: AAA domain; P 96.2 0.014 2.9E-07 51.5 6.7 63 164-228 8-75 (236)
326 PRK08927 fliI flagellum-specif 96.2 0.028 6.2E-07 54.1 9.1 87 174-264 157-258 (442)
327 PRK13765 ATP-dependent proteas 96.2 0.012 2.6E-07 59.6 6.8 77 151-231 28-104 (637)
328 CHL00081 chlI Mg-protoporyphyr 96.1 0.0087 1.9E-07 56.1 5.3 49 152-200 15-63 (350)
329 KOG3347 Predicted nucleotide k 96.1 0.01 2.3E-07 47.5 4.9 35 175-216 7-41 (176)
330 TIGR00416 sms DNA repair prote 96.1 0.03 6.6E-07 54.7 9.2 86 175-265 94-181 (454)
331 PF08433 KTI12: Chromatin asso 96.1 0.009 1.9E-07 54.1 5.2 26 176-201 2-27 (270)
332 cd03223 ABCD_peroxisomal_ALDP 96.1 0.031 6.8E-07 46.7 8.1 24 176-199 28-51 (166)
333 KOG1532 GTPase XAB1, interacts 96.1 0.0074 1.6E-07 53.4 4.2 29 174-202 18-46 (366)
334 PRK04040 adenylate kinase; Pro 96.1 0.0059 1.3E-07 52.2 3.7 25 176-200 3-27 (188)
335 PRK09519 recA DNA recombinatio 96.1 0.026 5.6E-07 58.2 8.7 83 175-264 60-148 (790)
336 PF06745 KaiC: KaiC; InterPro 96.1 0.014 3.1E-07 51.5 6.2 87 174-264 18-125 (226)
337 PRK08972 fliI flagellum-specif 96.1 0.024 5.2E-07 54.5 8.0 87 175-265 162-263 (444)
338 PF00625 Guanylate_kin: Guanyl 96.1 0.0097 2.1E-07 50.7 4.9 38 175-214 2-39 (183)
339 cd02023 UMPK Uridine monophosp 96.1 0.0046 9.9E-08 53.4 2.9 23 177-199 1-23 (198)
340 PF00910 RNA_helicase: RNA hel 96.1 0.0049 1.1E-07 47.5 2.7 23 178-200 1-23 (107)
341 PRK01184 hypothetical protein; 96.0 0.039 8.5E-07 46.9 8.6 21 176-197 2-22 (184)
342 TIGR02322 phosphon_PhnN phosph 96.0 0.0057 1.2E-07 51.9 3.3 25 176-200 2-26 (179)
343 PRK10751 molybdopterin-guanine 96.0 0.0071 1.5E-07 50.7 3.8 28 174-201 5-32 (173)
344 PRK08149 ATP synthase SpaL; Va 96.0 0.027 5.9E-07 54.2 8.1 86 176-265 152-252 (428)
345 PRK00625 shikimate kinase; Pro 96.0 0.0063 1.4E-07 51.3 3.5 24 177-200 2-25 (173)
346 PF07724 AAA_2: AAA domain (Cd 96.0 0.0079 1.7E-07 50.6 4.0 43 175-218 3-45 (171)
347 TIGR01650 PD_CobS cobaltochela 96.0 0.027 5.9E-07 52.0 7.7 158 155-323 46-233 (327)
348 PF13245 AAA_19: Part of AAA d 96.0 0.018 3.9E-07 41.2 5.2 25 174-198 9-33 (76)
349 cd00227 CPT Chloramphenicol (C 96.0 0.0064 1.4E-07 51.4 3.4 25 176-200 3-27 (175)
350 KOG1970 Checkpoint RAD17-RFC c 96.0 0.045 9.7E-07 53.2 9.3 40 161-200 89-135 (634)
351 PF05970 PIF1: PIF1-like helic 96.0 0.021 4.5E-07 54.4 7.2 40 162-201 9-48 (364)
352 TIGR02868 CydC thiol reductant 96.0 0.031 6.7E-07 56.2 8.8 26 174-199 360-385 (529)
353 TIGR02030 BchI-ChlI magnesium 96.0 0.012 2.7E-07 54.9 5.5 47 153-199 3-49 (337)
354 cd02024 NRK1 Nicotinamide ribo 96.0 0.0057 1.2E-07 52.1 3.0 23 177-199 1-23 (187)
355 cd03284 ABC_MutS1 MutS1 homolo 96.0 0.0076 1.7E-07 52.8 3.8 22 176-197 31-52 (216)
356 COG1126 GlnQ ABC-type polar am 95.9 0.0066 1.4E-07 52.0 3.1 25 175-199 28-52 (240)
357 cd03287 ABC_MSH3_euk MutS3 hom 95.9 0.0055 1.2E-07 53.8 2.7 23 175-197 31-53 (222)
358 COG4240 Predicted kinase [Gene 95.9 0.053 1.1E-06 46.8 8.4 82 172-254 47-133 (300)
359 TIGR03305 alt_F1F0_F1_bet alte 95.9 0.037 7.9E-07 53.5 8.5 89 176-265 139-243 (449)
360 COG0467 RAD55 RecA-superfamily 95.9 0.025 5.4E-07 51.2 7.1 51 173-227 21-71 (260)
361 COG3640 CooC CO dehydrogenase 95.9 0.019 4.1E-07 49.8 5.8 41 177-218 2-42 (255)
362 PRK00889 adenylylsulfate kinas 95.9 0.0096 2.1E-07 50.3 4.0 27 174-200 3-29 (175)
363 TIGR01425 SRP54_euk signal rec 95.9 0.042 9.1E-07 52.9 8.7 27 174-200 99-125 (429)
364 PTZ00185 ATPase alpha subunit; 95.9 0.073 1.6E-06 52.0 10.2 90 176-265 190-300 (574)
365 cd02020 CMPK Cytidine monophos 95.9 0.0069 1.5E-07 49.3 3.0 24 177-200 1-24 (147)
366 cd02021 GntK Gluconate kinase 95.9 0.0067 1.5E-07 49.7 3.0 23 177-199 1-23 (150)
367 TIGR03263 guanyl_kin guanylate 95.9 0.0067 1.5E-07 51.4 3.0 24 176-199 2-25 (180)
368 PHA02774 E1; Provisional 95.8 0.025 5.5E-07 55.9 7.2 48 163-214 421-469 (613)
369 TIGR00390 hslU ATP-dependent p 95.8 0.029 6.3E-07 53.5 7.3 47 155-201 13-73 (441)
370 cd00046 DEXDc DEAD-like helica 95.8 0.038 8.3E-07 43.9 7.3 36 177-212 2-37 (144)
371 PTZ00088 adenylate kinase 1; P 95.8 0.01 2.2E-07 52.4 4.2 24 177-200 8-31 (229)
372 PRK13407 bchI magnesium chelat 95.8 0.014 3E-07 54.5 5.2 49 151-199 5-53 (334)
373 TIGR00073 hypB hydrogenase acc 95.8 0.01 2.2E-07 51.7 4.1 32 169-200 16-47 (207)
374 PRK05342 clpX ATP-dependent pr 95.8 0.026 5.6E-07 54.4 7.1 46 155-200 72-133 (412)
375 PRK07276 DNA polymerase III su 95.8 0.49 1.1E-05 43.3 15.0 68 253-321 103-173 (290)
376 TIGR03881 KaiC_arch_4 KaiC dom 95.8 0.093 2E-06 46.3 10.3 39 175-215 20-58 (229)
377 cd02028 UMPK_like Uridine mono 95.8 0.0072 1.6E-07 51.3 2.9 24 177-200 1-24 (179)
378 PF08477 Miro: Miro-like prote 95.8 0.0088 1.9E-07 46.7 3.3 23 178-200 2-24 (119)
379 PF03193 DUF258: Protein of un 95.8 0.016 3.4E-07 47.9 4.8 34 163-199 26-59 (161)
380 TIGR01420 pilT_fam pilus retra 95.8 0.03 6.6E-07 52.8 7.3 112 174-294 121-232 (343)
381 PF00158 Sigma54_activat: Sigm 95.8 0.047 1E-06 45.7 7.7 67 157-227 2-71 (168)
382 cd01134 V_A-ATPase_A V/A-type 95.8 0.082 1.8E-06 49.2 9.8 48 176-227 158-206 (369)
383 TIGR00150 HI0065_YjeE ATPase, 95.8 0.018 3.9E-07 46.0 4.9 27 175-201 22-48 (133)
384 PRK05800 cobU adenosylcobinami 95.8 0.035 7.5E-07 46.6 6.9 47 177-229 3-49 (170)
385 COG0714 MoxR-like ATPases [Gen 95.8 0.028 6.1E-07 52.7 7.0 64 156-226 26-89 (329)
386 smart00072 GuKc Guanylate kina 95.8 0.04 8.8E-07 46.9 7.4 25 175-199 2-26 (184)
387 TIGR00750 lao LAO/AO transport 95.8 0.044 9.4E-07 50.7 8.2 37 165-201 22-60 (300)
388 PRK00300 gmk guanylate kinase; 95.8 0.0084 1.8E-07 52.0 3.3 25 175-199 5-29 (205)
389 TIGR00764 lon_rel lon-related 95.8 0.033 7.1E-07 56.6 7.8 75 153-231 17-91 (608)
390 PRK09280 F0F1 ATP synthase sub 95.7 0.057 1.2E-06 52.3 9.1 88 176-264 145-248 (463)
391 PF09848 DUF2075: Uncharacteri 95.7 0.054 1.2E-06 51.3 8.9 41 176-216 2-42 (352)
392 cd00071 GMPK Guanosine monopho 95.7 0.0079 1.7E-07 48.6 2.8 22 178-199 2-23 (137)
393 PRK11388 DNA-binding transcrip 95.7 0.18 4E-06 51.9 13.4 47 153-200 324-373 (638)
394 TIGR01040 V-ATPase_V1_B V-type 95.7 0.047 1E-06 52.7 8.3 89 176-264 142-257 (466)
395 cd01125 repA Hexameric Replica 95.7 0.064 1.4E-06 47.8 8.9 141 177-317 3-198 (239)
396 PF08298 AAA_PrkA: PrkA AAA do 95.7 0.017 3.7E-07 53.5 5.1 47 154-200 61-113 (358)
397 PRK03846 adenylylsulfate kinas 95.7 0.017 3.8E-07 49.8 5.0 29 172-200 21-49 (198)
398 PRK14529 adenylate kinase; Pro 95.7 0.043 9.2E-07 48.1 7.4 83 178-265 3-87 (223)
399 COG1763 MobB Molybdopterin-gua 95.7 0.011 2.4E-07 48.8 3.5 29 175-203 2-30 (161)
400 PRK06731 flhF flagellar biosyn 95.7 0.082 1.8E-06 47.8 9.4 89 174-264 74-164 (270)
401 cd00267 ABC_ATPase ABC (ATP-bi 95.7 0.036 7.7E-07 45.8 6.6 111 176-295 26-143 (157)
402 COG2274 SunT ABC-type bacterio 95.7 0.034 7.4E-07 57.2 7.7 23 176-198 500-522 (709)
403 cd02029 PRK_like Phosphoribulo 95.7 0.055 1.2E-06 48.5 8.0 24 177-200 1-24 (277)
404 PRK10078 ribose 1,5-bisphospho 95.7 0.0089 1.9E-07 51.1 3.1 24 176-199 3-26 (186)
405 COG1124 DppF ABC-type dipeptid 95.7 0.013 2.8E-07 51.1 4.0 23 176-198 34-56 (252)
406 PRK14737 gmk guanylate kinase; 95.7 0.011 2.3E-07 50.6 3.5 26 174-199 3-28 (186)
407 COG1116 TauB ABC-type nitrate/ 95.7 0.0094 2E-07 52.3 3.1 22 176-197 30-51 (248)
408 KOG0729 26S proteasome regulat 95.7 0.085 1.9E-06 46.6 8.9 92 154-265 177-281 (435)
409 TIGR01041 ATP_syn_B_arch ATP s 95.7 0.046 1E-06 53.1 8.1 90 176-265 142-249 (458)
410 PRK13947 shikimate kinase; Pro 95.6 0.01 2.2E-07 49.9 3.2 24 177-200 3-26 (171)
411 PRK06936 type III secretion sy 95.6 0.062 1.3E-06 51.8 8.8 87 175-265 162-263 (439)
412 cd01878 HflX HflX subfamily. 95.6 0.042 9E-07 47.6 7.2 27 173-199 39-65 (204)
413 PRK12678 transcription termina 95.6 0.048 1E-06 53.8 8.1 88 176-264 417-513 (672)
414 TIGR01313 therm_gnt_kin carboh 95.6 0.0084 1.8E-07 50.0 2.7 22 178-199 1-22 (163)
415 PRK05922 type III secretion sy 95.6 0.067 1.5E-06 51.5 9.0 86 176-265 158-258 (434)
416 TIGR03498 FliI_clade3 flagella 95.6 0.052 1.1E-06 52.2 8.3 87 176-265 141-241 (418)
417 cd00820 PEPCK_HprK Phosphoenol 95.6 0.011 2.5E-07 45.1 3.1 21 176-196 16-36 (107)
418 COG0541 Ffh Signal recognition 95.6 2.3 4.9E-05 40.8 18.6 58 174-233 99-157 (451)
419 PRK15453 phosphoribulokinase; 95.6 0.089 1.9E-06 47.5 9.1 28 173-200 3-30 (290)
420 PRK05986 cob(I)alamin adenolsy 95.6 0.075 1.6E-06 45.2 8.1 119 174-292 21-158 (191)
421 PRK13949 shikimate kinase; Pro 95.6 0.012 2.5E-07 49.5 3.2 24 177-200 3-26 (169)
422 PRK09099 type III secretion sy 95.5 0.045 9.8E-07 52.9 7.6 89 174-265 162-264 (441)
423 cd00464 SK Shikimate kinase (S 95.5 0.012 2.6E-07 48.4 3.2 23 178-200 2-24 (154)
424 cd03243 ABC_MutS_homologs The 95.5 0.0068 1.5E-07 52.6 1.8 23 176-198 30-52 (202)
425 TIGR01351 adk adenylate kinase 95.5 0.054 1.2E-06 47.2 7.5 23 178-200 2-24 (210)
426 cd01122 GP4d_helicase GP4d_hel 95.5 0.12 2.6E-06 46.9 10.1 51 176-229 31-81 (271)
427 PRK04182 cytidylate kinase; Pr 95.5 0.029 6.3E-07 47.4 5.7 24 177-200 2-25 (180)
428 PRK14530 adenylate kinase; Pro 95.5 0.012 2.7E-07 51.4 3.5 24 177-200 5-28 (215)
429 cd01136 ATPase_flagellum-secre 95.5 0.082 1.8E-06 49.1 8.9 86 176-265 70-170 (326)
430 cd01132 F1_ATPase_alpha F1 ATP 95.5 0.055 1.2E-06 48.7 7.5 94 176-273 70-181 (274)
431 PRK05057 aroK shikimate kinase 95.5 0.014 3E-07 49.2 3.6 26 175-200 4-29 (172)
432 PF02374 ArsA_ATPase: Anion-tr 95.5 0.027 5.9E-07 52.1 5.8 42 176-219 2-43 (305)
433 PRK14738 gmk guanylate kinase; 95.5 0.013 2.9E-07 50.9 3.5 26 173-198 11-36 (206)
434 PF03266 NTPase_1: NTPase; In 95.5 0.013 2.7E-07 49.2 3.2 23 178-200 2-24 (168)
435 PRK12339 2-phosphoglycerate ki 95.5 0.015 3.2E-07 50.2 3.7 25 175-199 3-27 (197)
436 PRK07594 type III secretion sy 95.5 0.047 1E-06 52.6 7.5 86 175-264 155-255 (433)
437 KOG2170 ATPase of the AAA+ sup 95.5 0.052 1.1E-06 48.9 7.1 28 173-200 108-135 (344)
438 PF07726 AAA_3: ATPase family 95.5 0.015 3.3E-07 45.7 3.5 24 178-201 2-25 (131)
439 cd01672 TMPK Thymidine monopho 95.5 0.044 9.5E-07 47.0 6.7 24 177-200 2-25 (200)
440 COG0003 ArsA Predicted ATPase 95.5 0.031 6.8E-07 51.7 6.0 46 175-222 2-47 (322)
441 TIGR00176 mobB molybdopterin-g 95.5 0.013 2.9E-07 48.4 3.3 33 177-210 1-33 (155)
442 COG1936 Predicted nucleotide k 95.5 0.012 2.5E-07 48.6 2.8 20 177-196 2-21 (180)
443 cd03285 ABC_MSH2_euk MutS2 hom 95.5 0.019 4.2E-07 50.5 4.4 25 174-198 29-53 (222)
444 TIGR02173 cyt_kin_arch cytidyl 95.5 0.032 6.9E-07 46.7 5.6 24 177-200 2-25 (171)
445 TIGR03496 FliI_clade1 flagella 95.4 0.062 1.3E-06 51.7 8.1 86 175-264 137-237 (411)
446 PRK13975 thymidylate kinase; P 95.4 0.015 3.3E-07 50.0 3.6 25 176-200 3-27 (196)
447 TIGR00041 DTMP_kinase thymidyl 95.4 0.048 1E-06 46.8 6.8 26 176-201 4-29 (195)
448 TIGR02655 circ_KaiC circadian 95.4 0.098 2.1E-06 51.8 9.7 49 174-225 20-68 (484)
449 cd02027 APSK Adenosine 5'-phos 95.4 0.013 2.9E-07 48.0 3.0 24 177-200 1-24 (149)
450 PRK10463 hydrogenase nickel in 95.4 0.028 6.1E-07 51.0 5.4 36 166-201 95-130 (290)
451 PRK08472 fliI flagellum-specif 95.4 0.072 1.6E-06 51.4 8.3 87 175-265 157-257 (434)
452 PRK13948 shikimate kinase; Pro 95.4 0.019 4E-07 48.8 3.9 28 173-200 8-35 (182)
453 PF13521 AAA_28: AAA domain; P 95.4 0.014 3E-07 48.7 3.0 21 178-198 2-22 (163)
454 KOG0727 26S proteasome regulat 95.3 0.84 1.8E-05 40.3 13.8 73 174-266 188-260 (408)
455 TIGR01039 atpD ATP synthase, F 95.3 0.099 2.2E-06 50.6 9.0 89 176-265 144-248 (461)
456 COG1136 SalX ABC-type antimicr 95.3 0.015 3.2E-07 50.8 3.1 23 176-198 32-54 (226)
457 PRK00698 tmk thymidylate kinas 95.3 0.05 1.1E-06 47.1 6.5 26 176-201 4-29 (205)
458 cd03282 ABC_MSH4_euk MutS4 hom 95.3 0.016 3.5E-07 50.2 3.3 24 175-198 29-52 (204)
459 cd03116 MobB Molybdenum is an 95.3 0.026 5.7E-07 46.7 4.4 27 176-202 2-28 (159)
460 PRK05688 fliI flagellum-specif 95.3 0.11 2.4E-06 50.2 9.2 87 175-265 168-269 (451)
461 KOG0651 26S proteasome regulat 95.3 0.05 1.1E-06 49.2 6.3 29 174-202 165-193 (388)
462 PRK13946 shikimate kinase; Pro 95.2 0.018 3.9E-07 49.1 3.4 26 175-200 10-35 (184)
463 KOG0736 Peroxisome assembly fa 95.2 0.36 7.7E-06 49.2 12.6 167 158-348 405-599 (953)
464 COG0529 CysC Adenylylsulfate k 95.2 0.037 8E-07 45.9 5.0 33 170-202 18-50 (197)
465 PRK09825 idnK D-gluconate kina 95.2 0.018 3.9E-07 48.7 3.3 25 176-200 4-28 (176)
466 TIGR03880 KaiC_arch_3 KaiC dom 95.2 0.13 2.8E-06 45.3 8.9 47 175-225 16-62 (224)
467 cd01129 PulE-GspE PulE/GspE Th 95.2 0.056 1.2E-06 48.9 6.7 35 164-199 70-104 (264)
468 TIGR00382 clpX endopeptidase C 95.2 0.085 1.8E-06 50.7 8.1 46 155-200 78-141 (413)
469 PRK09435 membrane ATPase/prote 95.2 0.062 1.4E-06 50.1 7.0 37 165-201 44-82 (332)
470 TIGR01287 nifH nitrogenase iro 95.2 0.018 3.9E-07 52.5 3.5 27 176-202 1-27 (275)
471 PF03029 ATP_bind_1: Conserved 95.2 0.02 4.3E-07 51.0 3.6 33 180-214 1-33 (238)
472 COG1224 TIP49 DNA helicase TIP 95.2 0.042 9.1E-07 50.6 5.7 54 153-206 38-96 (450)
473 COG4136 ABC-type uncharacteriz 95.2 0.031 6.8E-07 45.0 4.2 37 176-212 29-65 (213)
474 PRK14493 putative bifunctional 95.2 0.026 5.6E-07 51.2 4.3 28 176-203 2-29 (274)
475 PLN02200 adenylate kinase fami 95.1 0.022 4.7E-07 50.6 3.7 26 174-199 42-67 (234)
476 PF13604 AAA_30: AAA domain; P 95.1 0.031 6.7E-07 48.2 4.6 30 173-202 16-45 (196)
477 cd00984 DnaB_C DnaB helicase C 95.1 0.18 3.9E-06 44.9 9.8 50 176-228 14-63 (242)
478 PRK10875 recD exonuclease V su 95.1 0.061 1.3E-06 54.5 7.2 53 175-227 167-220 (615)
479 PRK07196 fliI flagellum-specif 95.1 0.083 1.8E-06 51.0 7.8 26 174-199 154-179 (434)
480 COG3598 RepA RecA-family ATPas 95.1 0.091 2E-06 47.8 7.4 88 177-264 91-204 (402)
481 PRK05201 hslU ATP-dependent pr 95.1 0.063 1.4E-06 51.3 6.8 46 155-200 16-75 (443)
482 PRK07721 fliI flagellum-specif 95.1 0.1 2.2E-06 50.6 8.4 88 174-264 157-258 (438)
483 TIGR03375 type_I_sec_LssB type 95.1 0.077 1.7E-06 55.2 8.2 24 176-199 492-515 (694)
484 PF00005 ABC_tran: ABC transpo 95.1 0.019 4E-07 46.2 2.9 25 176-200 12-36 (137)
485 PF01078 Mg_chelatase: Magnesi 95.1 0.035 7.6E-07 47.7 4.7 43 154-198 3-45 (206)
486 CHL00060 atpB ATP synthase CF1 95.1 0.093 2E-06 51.2 8.0 89 176-265 162-273 (494)
487 PRK05818 DNA polymerase III su 95.0 2 4.4E-05 38.5 15.7 115 174-310 6-147 (261)
488 PF06068 TIP49: TIP49 C-termin 95.0 0.038 8.3E-07 51.5 5.0 53 153-205 23-80 (398)
489 KOG0652 26S proteasome regulat 95.0 1 2.3E-05 39.9 13.5 52 148-199 165-229 (424)
490 PRK04196 V-type ATP synthase s 95.0 0.083 1.8E-06 51.5 7.6 89 176-264 144-250 (460)
491 PRK13695 putative NTPase; Prov 95.0 0.035 7.6E-07 46.8 4.5 25 177-201 2-26 (174)
492 TIGR03497 FliI_clade2 flagella 95.0 0.11 2.5E-06 49.9 8.4 87 174-264 136-237 (413)
493 PRK09302 circadian clock prote 95.0 0.13 2.9E-06 51.3 9.3 85 175-264 273-373 (509)
494 TIGR03574 selen_PSTK L-seryl-t 95.0 0.019 4.2E-07 51.5 3.0 24 177-200 1-24 (249)
495 PRK03731 aroL shikimate kinase 95.0 0.024 5.1E-07 47.6 3.4 25 176-200 3-27 (171)
496 cd02117 NifH_like This family 95.0 0.025 5.4E-07 49.4 3.6 26 176-201 1-26 (212)
497 PRK14532 adenylate kinase; Pro 94.9 0.022 4.8E-07 48.7 3.2 22 178-199 3-24 (188)
498 PLN02348 phosphoribulokinase 94.9 0.027 5.8E-07 53.3 3.9 29 172-200 46-74 (395)
499 COG0237 CoaE Dephospho-CoA kin 94.9 0.071 1.5E-06 45.9 6.1 22 176-197 3-24 (201)
500 PRK06761 hypothetical protein; 94.9 0.025 5.4E-07 51.4 3.4 26 176-201 4-29 (282)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=2.2e-50 Score=411.84 Aligned_cols=356 Identities=28% Similarity=0.451 Sum_probs=288.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHhhhhhhHhh-----------------cccc
Q 047930 37 QNLKTEVGNLEAERVSKQREVDEAKRRGEEIEKYVEKWLASVNGVIDEAEKFTGVDARA-----------------NKRC 99 (395)
Q Consensus 37 ~~l~~~i~~l~~~l~~i~~~l~~a~~~~~~~~~~~~~Wl~~lr~~a~d~ed~ld~~~~~-----------------~~~~ 99 (395)
.+.++.+..|+..|..++.++++++.++. ....+..|...+++++|++||.++.+... +.-|
T Consensus 24 ~~~~~~i~~Lk~~L~~l~~~l~d~~a~~~-~~~~~~~~~e~~~~~~~~~e~~~~~~~v~~~~~~~~~~l~~~~~~~~~~c 102 (889)
T KOG4658|consen 24 DGKDNYILELKENLKALQSALEDLDAKRD-DLERRVNWEEDVGDLVYLAEDIIWLFLVEEIERKANDLLSTRSVERQRLC 102 (889)
T ss_pred hchHHHHHHHHHHHHHHHHHHHHHHhhcc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhHHHHHHHh
Confidence 67778899999999999999999998874 46888999999999999999998754211 0112
Q ss_pred ccCC-CcchhHhhHHHHHHHHHHHHHHHHHHcCCcceeeec-cCCCCccccccccccchhchHHHHHHHHHHhcCCCceE
Q 047930 100 FKGL-CPNLKIRRRLSKEAERQKEAIVKVREAGRFDRISYN-IIPDDSLLLSNKDYEAFESRMSTLNDILDALKNPDVNM 177 (395)
Q Consensus 100 ~~~~-~~~~~~r~~i~~~i~~~~~~l~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~gr~~~~~~l~~~l~~~~~~v 177 (395)
+.+. ......-+.+++++..+...++.+...+.|..+... .+.......+...... +|.+..++++.+.|.+.+..+
T Consensus 103 ~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~-VG~e~~~~kl~~~L~~d~~~i 181 (889)
T KOG4658|consen 103 LCGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDPREKVETRPIQSESD-VGLETMLEKLWNRLMEDDVGI 181 (889)
T ss_pred hhhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccchhhcccCCCCcccc-ccHHHHHHHHHHHhccCCCCE
Confidence 1111 123344455566666666666666545445444321 1111222222222333 899999999999999887799
Q ss_pred EEEEecCCCcHHHHHHHHHHHhc-ccCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCccccch---hhhHHHHHHHHhcC
Q 047930 178 LGIYGMGGIGKTTLAKEVARKAE-NEKLFDQVIFVEVSQIQDIRKIQGEFADKLGLTLHEETE---SGRARSLCNRLKKE 253 (395)
Q Consensus 178 i~I~G~~GiGKTtLa~~v~~~~~-~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~---~~~~~~l~~~l~~~ 253 (395)
++|+||||+||||||++++|+.. +..+|+.++||+||+.++...++.+|+..++.......+ ......+.+.|. +
T Consensus 182 v~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~~L~-~ 260 (889)
T KOG4658|consen 182 VGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLDEEWEDKEEDELASKLLNLLE-G 260 (889)
T ss_pred EEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccCCcccchhhHHHHHHHHHHHhc-c
Confidence 99999999999999999999988 889999999999999999999999999998875444333 345667777777 7
Q ss_pred CeEEEEEeCCCCccccchhccccCCCCCCcEEEEeecchhhhhhcCCCcceeecCCCChHHHHHHHHHhhCCC--CCCCc
Q 047930 254 KRILVILDNIWENLDFQAVGIPHGDGHKGSKVLLTARSLDVLSRKMDSQQNFSFDVLKEDEAWSLFKKMAGDY--IEGSE 331 (395)
Q Consensus 254 kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iivTtR~~~va~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~--~~~~~ 331 (395)
+||||||||||+..+|+.+..++|...+||+|++|||++.|+...++....++++.|+++|||.||++.++.. ...+.
T Consensus 261 krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~~~~~~ 340 (889)
T KOG4658|consen 261 KRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTLGSHPD 340 (889)
T ss_pred CceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccccccCccccHHHHHHhhcccccccccc
Confidence 9999999999999999999999999999999999999999976658888899999999999999999999854 23355
Q ss_pred hHHHHHHHHHHcCCchHHHHHHHHHhhCC-CHHHHHHHHHHhcCCCCCCCCCchHhhhhhhcccC
Q 047930 332 FKWVAREVAKECAGLPVSIVTVARALRNK-RLFEWKDALEQLRRPSSTNFKDIQPTAYKAIELSY 395 (395)
Q Consensus 332 ~~~~~~~i~~~c~GlPlai~~i~~~l~~~-~~~~w~~~l~~l~~~~~~~~~~~~~~i~~~L~lSY 395 (395)
+.++|++++++|+|+|||++++|+.|+.| +..+|+++++.+.+....+.++..+.++++|++||
T Consensus 341 i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSy 405 (889)
T KOG4658|consen 341 IEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILPILKLSY 405 (889)
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHHhhhccH
Confidence 88999999999999999999999999988 88899999999999877777777899999999999
No 2
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=2.3e-38 Score=291.84 Aligned_cols=235 Identities=33% Similarity=0.537 Sum_probs=183.3
Q ss_pred hHHHHHHHHHHhcC--CCceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCcc-
Q 047930 159 RMSTLNDILDALKN--PDVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFADKLGLTLH- 235 (395)
Q Consensus 159 r~~~~~~l~~~l~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~- 235 (395)
|+.++++|.++|.+ ++.++|+|+|+||+||||||..++++...+.+|+.++|++++...+...++..|+..++....
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 80 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSS 80 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-ST
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccc
Confidence 68899999999987 789999999999999999999999986677889999999999999999999999999987633
Q ss_pred ---ccchhhhHHHHHHHHhcCCeEEEEEeCCCCccccchhccccCCCCCCcEEEEeecchhhhhhcCCCcceeecCCCCh
Q 047930 236 ---EETESGRARSLCNRLKKEKRILVILDNIWENLDFQAVGIPHGDGHKGSKVLLTARSLDVLSRKMDSQQNFSFDVLKE 312 (395)
Q Consensus 236 ---~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iivTtR~~~va~~~~~~~~~~~l~~L~~ 312 (395)
..........+.+.|. ++++||||||||+...|+.+...++....||+||||||+..++.........+++++|++
T Consensus 81 ~~~~~~~~~~~~~l~~~L~-~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~~ 159 (287)
T PF00931_consen 81 ISDPKDIEELQDQLRELLK-DKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLSE 159 (287)
T ss_dssp SSCCSSHHHHHHHHHHHHC-CTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--H
T ss_pred cccccccccccccchhhhc-cccceeeeeeeccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 2334446677777777 679999999999999998888888777789999999999888643333367999999999
Q ss_pred HHHHHHHHHhhCCCC--CCCchHHHHHHHHHHcCCchHHHHHHHHHhhCC-CHHHHHHHHHHhcCCCCCCCCCchHhhhh
Q 047930 313 DEAWSLFKKMAGDYI--EGSEFKWVAREVAKECAGLPVSIVTVARALRNK-RLFEWKDALEQLRRPSSTNFKDIQPTAYK 389 (395)
Q Consensus 313 ~e~~~lf~~~~~~~~--~~~~~~~~~~~i~~~c~GlPlai~~i~~~l~~~-~~~~w~~~l~~l~~~~~~~~~~~~~~i~~ 389 (395)
+|+++||.+.++... .++...+.+++|+++|+|+||||+++|++|+.+ +..+|+.+++++...... ..+....++.
T Consensus 160 ~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~-~~~~~~~~~~ 238 (287)
T PF00931_consen 160 EEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRE-SRDYDRSVFS 238 (287)
T ss_dssp HHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTC-SSGSCHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccc
Confidence 999999999997543 344556689999999999999999999999754 788999999987765432 2223577888
Q ss_pred hhcccC
Q 047930 390 AIELSY 395 (395)
Q Consensus 390 ~L~lSY 395 (395)
++.+||
T Consensus 239 ~l~~s~ 244 (287)
T PF00931_consen 239 ALELSY 244 (287)
T ss_dssp HHHHHH
T ss_pred cceech
Confidence 888887
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=1.9e-31 Score=285.81 Aligned_cols=232 Identities=22% Similarity=0.337 Sum_probs=180.3
Q ss_pred ccccchhchHHHHHHHHHHhc--CCCceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEe---CCc---------
Q 047930 151 KDYEAFESRMSTLNDILDALK--NPDVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEV---SQI--------- 216 (395)
Q Consensus 151 ~~~~~~~gr~~~~~~l~~~l~--~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~---s~~--------- 216 (395)
.+..+++|++..++++..+|. .++.++|+|+||||+||||||+.+|+... .+|++.+|+.. +..
T Consensus 181 ~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~--~~F~g~vfv~~~~v~~~~~~~~~~~~ 258 (1153)
T PLN03210 181 NDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLS--RQFQSSVFIDRAFISKSMEIYSSANP 258 (1153)
T ss_pred cccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHh--hcCCeEEEeeccccccchhhcccccc
Confidence 445679999999999988875 55789999999999999999999999876 45888877642 111
Q ss_pred --CC-HHHHHHHHHHHhCCCccccchhhhHHHHHHHHhcCCeEEEEEeCCCCccccchhccccCCCCCCcEEEEeecchh
Q 047930 217 --QD-IRKIQGEFADKLGLTLHEETESGRARSLCNRLKKEKRILVILDNIWENLDFQAVGIPHGDGHKGSKVLLTARSLD 293 (395)
Q Consensus 217 --~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iivTtR~~~ 293 (395)
++ ...+..+++..+...... .......+.+.+. ++|+||||||||+...|+.+.....+.++||+||||||+..
T Consensus 259 ~~~~~~~~l~~~~l~~il~~~~~--~~~~~~~~~~~L~-~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd~~ 335 (1153)
T PLN03210 259 DDYNMKLHLQRAFLSEILDKKDI--KIYHLGAMEERLK-HRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKDKH 335 (1153)
T ss_pred cccchhHHHHHHHHHHHhCCCCc--ccCCHHHHHHHHh-CCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCcHH
Confidence 01 122344444443221111 0111245666666 79999999999999999988766666678999999999999
Q ss_pred hhhhcCCCcceeecCCCChHHHHHHHHHhhCCCC-CCCchHHHHHHHHHHcCCchHHHHHHHHHhhCCCHHHHHHHHHHh
Q 047930 294 VLSRKMDSQQNFSFDVLKEDEAWSLFKKMAGDYI-EGSEFKWVAREVAKECAGLPVSIVTVARALRNKRLFEWKDALEQL 372 (395)
Q Consensus 294 va~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~-~~~~~~~~~~~i~~~c~GlPlai~~i~~~l~~~~~~~w~~~l~~l 372 (395)
++. ..+..++|+++.|++++||+||++.+|... +++++.+++++|+++|+|+||||+++|++|+.++..+|+.+++++
T Consensus 336 vl~-~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W~~~l~~L 414 (1153)
T PLN03210 336 FLR-AHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDWMDMLPRL 414 (1153)
T ss_pred HHH-hcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 863 345567999999999999999999998543 445678899999999999999999999999999999999999998
Q ss_pred cCCCCCCCCCchHhhhhhhcccC
Q 047930 373 RRPSSTNFKDIQPTAYKAIELSY 395 (395)
Q Consensus 373 ~~~~~~~~~~~~~~i~~~L~lSY 395 (395)
.... ...|..+|++||
T Consensus 415 ~~~~-------~~~I~~~L~~SY 430 (1153)
T PLN03210 415 RNGL-------DGKIEKTLRVSY 430 (1153)
T ss_pred HhCc-------cHHHHHHHHHhh
Confidence 7632 356889999998
No 4
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.54 E-value=3.2e-12 Score=116.56 Aligned_cols=198 Identities=15% Similarity=0.157 Sum_probs=124.9
Q ss_pred CCCceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCccccchhhhHHHHHHH--
Q 047930 172 NPDVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFADKLGLTLHEETESGRARSLCNR-- 249 (395)
Q Consensus 172 ~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~-- 249 (395)
..+.+.+.|+|++|+|||||++.+++...... + ..+|+ +....+..+++..|+..++.+............+.+.
T Consensus 40 ~~~~~~~~l~G~~G~GKTtl~~~l~~~l~~~~-~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~ 116 (269)
T TIGR03015 40 SQREGFILITGEVGAGKTTLIRNLLKRLDQER-V-VAAKL-VNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLI 116 (269)
T ss_pred hcCCCEEEEEcCCCCCHHHHHHHHHHhcCCCC-e-EEeee-eCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH
Confidence 34456899999999999999999998865321 1 22333 2334577889999999887764433222333333332
Q ss_pred --HhcCCeEEEEEeCCCCcc--ccchhcc--cc-CCCCCCcEEEEeecchhhh--h------hcCCCcceeecCCCChHH
Q 047930 250 --LKKEKRILVILDNIWENL--DFQAVGI--PH-GDGHKGSKVLLTARSLDVL--S------RKMDSQQNFSFDVLKEDE 314 (395)
Q Consensus 250 --l~~~kr~LlVlDdv~~~~--~~~~l~~--~l-~~~~~gs~iivTtR~~~va--~------~~~~~~~~~~l~~L~~~e 314 (395)
...+++++||+||++... .++.+.. .+ ........|++|....-.. . ........+++++|+.+|
T Consensus 117 ~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e 196 (269)
T TIGR03015 117 EQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPEFRETLQSPQLQQLRQRIIASCHLGPLDREE 196 (269)
T ss_pred HHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHHHHHHHcCchhHHHHhheeeeeeCCCCCHHH
Confidence 335788999999998753 3443321 11 1122233556666532110 0 000113468899999999
Q ss_pred HHHHHHHhhCCC---CCCCchHHHHHHHHHHcCCchHHHHHHHHHhh------C-C--CHHHHHHHHHHh
Q 047930 315 AWSLFKKMAGDY---IEGSEFKWVAREVAKECAGLPVSIVTVARALR------N-K--RLFEWKDALEQL 372 (395)
Q Consensus 315 ~~~lf~~~~~~~---~~~~~~~~~~~~i~~~c~GlPlai~~i~~~l~------~-~--~~~~w~~~l~~l 372 (395)
..+++...+... ....-..+..+.|++.|+|.|..|..++..+- + + +.+.++.++..+
T Consensus 197 ~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~~~~a~~~~~~~i~~~~v~~~~~~~ 266 (269)
T TIGR03015 197 TREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRLLLSAFLEEKREIGGEEVREVIAEI 266 (269)
T ss_pred HHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 999998877421 11223346789999999999999999988862 1 1 566666666654
No 5
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.47 E-value=4.4e-13 Score=119.32 Aligned_cols=194 Identities=17% Similarity=0.246 Sum_probs=105.1
Q ss_pred hhchHHHHHHHHHHhcCCCceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHH---------
Q 047930 156 FESRMSTLNDILDALKNPDVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEF--------- 226 (395)
Q Consensus 156 ~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i--------- 226 (395)
|+||+.+++.|.+++..+..+.+.|+|+.|+|||+|++.+.+...... + .++|+........ .....+
T Consensus 1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~-~-~~~y~~~~~~~~~-~~~~~~~~~~~~~~~ 77 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINELKEKG-Y-KVVYIDFLEESNE-SSLRSFIEETSLADE 77 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHCT--E-E-CCCHHCCTTBSHH-HHHHHHHHHHHHHCH
T ss_pred CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHhhhcC-C-cEEEEecccchhh-hHHHHHHHHHHHHHH
Confidence 789999999999988876678899999999999999999999874321 1 2344444333222 222222
Q ss_pred -HHHh----CCCc-------cccchhhhHHHHHHHHhc-CCeEEEEEeCCCCcc-cc---ch----hccccC--CCCCCc
Q 047930 227 -ADKL----GLTL-------HEETESGRARSLCNRLKK-EKRILVILDNIWENL-DF---QA----VGIPHG--DGHKGS 283 (395)
Q Consensus 227 -~~~l----~~~~-------~~~~~~~~~~~l~~~l~~-~kr~LlVlDdv~~~~-~~---~~----l~~~l~--~~~~gs 283 (395)
...+ .... ...........+.+.+.. +++++|||||+.... .. .. +...+. ......
T Consensus 78 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 157 (234)
T PF01637_consen 78 LSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNV 157 (234)
T ss_dssp CHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTE
T ss_pred HHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCc
Confidence 1111 1100 011122345566666653 456999999996655 11 11 111111 123344
Q ss_pred EEEEeecchhhhhh-------cCCCcceeecCCCChHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHHHHH
Q 047930 284 KVLLTARSLDVLSR-------KMDSQQNFSFDVLKEDEAWSLFKKMAGDYIEGSEFKWVAREVAKECAGLPVSIVT 352 (395)
Q Consensus 284 ~iivTtR~~~va~~-------~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~ 352 (395)
.+|+++.+...... ..+....+.+++|+.+++++++...+.....-+.-.+..++|+..+||+|..|..
T Consensus 158 ~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 158 SIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKELIKLPFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp EEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC------HHHHHHHHHHHTT-HHHHHH
T ss_pred eEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCHHHHhc
Confidence 45555554433221 2344456999999999999999997643311111234569999999999999865
No 6
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.39 E-value=3.6e-11 Score=115.84 Aligned_cols=215 Identities=20% Similarity=0.174 Sum_probs=136.3
Q ss_pred cchhchHHHHHHHHHHhc----CCCceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHHHH
Q 047930 154 EAFESRMSTLNDILDALK----NPDVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFADK 229 (395)
Q Consensus 154 ~~~~gr~~~~~~l~~~l~----~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 229 (395)
..++||++++++|...+. ......+.|+|++|+|||++++.++++.......-.++++++....+...++..++.+
T Consensus 30 ~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~~ 109 (394)
T PRK00411 30 ENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIARQ 109 (394)
T ss_pred CCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHHHH
Confidence 458899999999888773 3445678899999999999999999987644323446778887777888999999999
Q ss_pred hCCC-cc--ccchhhhHHHHHHHHhc-CCeEEEEEeCCCCcc------ccchhccccCCCCCCcE--EEEeecchhhhhh
Q 047930 230 LGLT-LH--EETESGRARSLCNRLKK-EKRILVILDNIWENL------DFQAVGIPHGDGHKGSK--VLLTARSLDVLSR 297 (395)
Q Consensus 230 l~~~-~~--~~~~~~~~~~l~~~l~~-~kr~LlVlDdv~~~~------~~~~l~~~l~~~~~gs~--iivTtR~~~va~~ 297 (395)
+... .+ ..+.......+.+.+.. ++..+||||+++... .+..+.... ....+++ +|.++....+...
T Consensus 110 l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~-~~~~~~~v~vI~i~~~~~~~~~ 188 (394)
T PRK00411 110 LFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAH-EEYPGARIGVIGISSDLTFLYI 188 (394)
T ss_pred hcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhh-hccCCCeEEEEEEECCcchhhh
Confidence 8652 11 11223445566666653 566899999997643 122222211 1122333 5666665433211
Q ss_pred ------cCCCcceeecCCCChHHHHHHHHHhhCCC----CCCCchHHHHHHHHHH----cCCchHHHHHHHHHh--h---
Q 047930 298 ------KMDSQQNFSFDVLKEDEAWSLFKKMAGDY----IEGSEFKWVAREVAKE----CAGLPVSIVTVARAL--R--- 358 (395)
Q Consensus 298 ------~~~~~~~~~l~~L~~~e~~~lf~~~~~~~----~~~~~~~~~~~~i~~~----c~GlPlai~~i~~~l--~--- 358 (395)
..-....+.+.|++.++..+++...+... ..++ +..+.|++. .|..+.|+..+-... .
T Consensus 189 l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~---~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~ 265 (394)
T PRK00411 189 LDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDD---EVLDLIADLTAREHGDARVAIDLLRRAGLIAERE 265 (394)
T ss_pred cCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCH---hHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHc
Confidence 01123478999999999999999876321 1122 233444444 455777777764432 1
Q ss_pred C--C-CHHHHHHHHHHh
Q 047930 359 N--K-RLFEWKDALEQL 372 (395)
Q Consensus 359 ~--~-~~~~w~~~l~~l 372 (395)
+ + +.+....+++.+
T Consensus 266 ~~~~I~~~~v~~a~~~~ 282 (394)
T PRK00411 266 GSRKVTEEDVRKAYEKS 282 (394)
T ss_pred CCCCcCHHHHHHHHHHH
Confidence 1 2 677787777765
No 7
>PF05729 NACHT: NACHT domain
Probab=99.37 E-value=7e-12 Score=105.41 Aligned_cols=144 Identities=24% Similarity=0.329 Sum_probs=91.9
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhcccCC----CCEEEEEEeCCcCCHH---HHHHHHHHHhCCCccccchhhhHHHHHH
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARKAENEKL----FDQVIFVEVSQIQDIR---KIQGEFADKLGLTLHEETESGRARSLCN 248 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~----f~~~~wv~~s~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~l~~ 248 (395)
+++.|+|.+|+||||+++.++........ +...+|.+.+...... .+...|........... ...+..
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~-----~~~~~~ 75 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPI-----EELLQE 75 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhh-----HHHHHH
Confidence 57899999999999999999988665443 3456677765543322 34444444333221111 112233
Q ss_pred HHhcCCeEEEEEeCCCCccc---------cchhccccCC--CCCCcEEEEeecchhh--hhhcCCCcceeecCCCChHHH
Q 047930 249 RLKKEKRILVILDNIWENLD---------FQAVGIPHGD--GHKGSKVLLTARSLDV--LSRKMDSQQNFSFDVLKEDEA 315 (395)
Q Consensus 249 ~l~~~kr~LlVlDdv~~~~~---------~~~l~~~l~~--~~~gs~iivTtR~~~v--a~~~~~~~~~~~l~~L~~~e~ 315 (395)
.+...++++||||++++... +..+...+.. ..+++++|||+|.... ..........+++.+|++++.
T Consensus 76 ~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~ 155 (166)
T PF05729_consen 76 LLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDI 155 (166)
T ss_pred HHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHH
Confidence 33457899999999976532 2222222212 2568999999998665 222344446899999999999
Q ss_pred HHHHHHhhC
Q 047930 316 WSLFKKMAG 324 (395)
Q Consensus 316 ~~lf~~~~~ 324 (395)
.+++.+.+.
T Consensus 156 ~~~~~~~f~ 164 (166)
T PF05729_consen 156 KQYLRKYFS 164 (166)
T ss_pred HHHHHHHhh
Confidence 999988763
No 8
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.30 E-value=3e-10 Score=108.35 Aligned_cols=219 Identities=17% Similarity=0.202 Sum_probs=133.9
Q ss_pred cchhchHHHHHHHHHHhc----CCCceEEEEEecCCCcHHHHHHHHHHHhcccC-C---CCEEEEEEeCCcCCHHHHHHH
Q 047930 154 EAFESRMSTLNDILDALK----NPDVNMLGIYGMGGIGKTTLAKEVARKAENEK-L---FDQVIFVEVSQIQDIRKIQGE 225 (395)
Q Consensus 154 ~~~~gr~~~~~~l~~~l~----~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~-~---f~~~~wv~~s~~~~~~~~~~~ 225 (395)
..++||+.++++|..++. ....+.+.|+|++|+|||++++.+++...... . --..+|+++....+...++..
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~ 94 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVE 94 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHH
Confidence 468899999999988875 34456799999999999999999998753211 1 124678888777788889999
Q ss_pred HHHHhC---CCccc--cchhhhHHHHHHHHh-cCCeEEEEEeCCCCcc-ccc----hhcccc-CCCC--CCcEEEEeecc
Q 047930 226 FADKLG---LTLHE--ETESGRARSLCNRLK-KEKRILVILDNIWENL-DFQ----AVGIPH-GDGH--KGSKVLLTARS 291 (395)
Q Consensus 226 i~~~l~---~~~~~--~~~~~~~~~l~~~l~-~~kr~LlVlDdv~~~~-~~~----~l~~~l-~~~~--~gs~iivTtR~ 291 (395)
|++++. ...+. .+..+....+.+.+. .+++++||||+++... ... .+.... .... ....+|.+|..
T Consensus 95 i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~n~ 174 (365)
T TIGR02928 95 LANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGISND 174 (365)
T ss_pred HHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEECC
Confidence 999883 32211 122334455666664 3568899999997662 111 221110 1111 23345555544
Q ss_pred hhhh----hhcCC--CcceeecCCCChHHHHHHHHHhhCC----CCCCCchHHHHHHHHHHcCCchHHHHHHH-HHh---
Q 047930 292 LDVL----SRKMD--SQQNFSFDVLKEDEAWSLFKKMAGD----YIEGSEFKWVAREVAKECAGLPVSIVTVA-RAL--- 357 (395)
Q Consensus 292 ~~va----~~~~~--~~~~~~l~~L~~~e~~~lf~~~~~~----~~~~~~~~~~~~~i~~~c~GlPlai~~i~-~~l--- 357 (395)
.... ..... ....+.+.|++.++..+++..++.. ...+++..+.+.+++..+.|.|-.+..+. ...
T Consensus 175 ~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~~a 254 (365)
T TIGR02928 175 LKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGEIA 254 (365)
T ss_pred cchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 3221 11111 1246899999999999999988731 11233333455667777789985543322 111
Q ss_pred -h-C--C-CHHHHHHHHHHh
Q 047930 358 -R-N--K-RLFEWKDALEQL 372 (395)
Q Consensus 358 -~-~--~-~~~~w~~~l~~l 372 (395)
. + . +.+..+.+.+.+
T Consensus 255 ~~~~~~~it~~~v~~a~~~~ 274 (365)
T TIGR02928 255 EREGAERVTEDHVEKAQEKI 274 (365)
T ss_pred HHcCCCCCCHHHHHHHHHHH
Confidence 1 1 2 566666666554
No 9
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.29 E-value=6.3e-11 Score=126.31 Aligned_cols=193 Identities=13% Similarity=0.143 Sum_probs=123.3
Q ss_pred cchhchHHHHHHHHHHhcCCCceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeC-CcCCHHHHHHHHHHHhCC
Q 047930 154 EAFESRMSTLNDILDALKNPDVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVS-QIQDIRKIQGEFADKLGL 232 (395)
Q Consensus 154 ~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s-~~~~~~~~~~~i~~~l~~ 232 (395)
..++.|...++.+-. ....+++.|+|++|.||||++.++... +..++|+++. .+.++..++..++..++.
T Consensus 14 ~~~~~R~rl~~~l~~---~~~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f~~~l~~~l~~ 84 (903)
T PRK04841 14 HNTVVRERLLAKLSG---ANNYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERFASYLIAALQQ 84 (903)
T ss_pred cccCcchHHHHHHhc---ccCCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHHHHHHHHHHHH
Confidence 456667655554432 245689999999999999999998853 2258999996 445667777777777642
Q ss_pred Cccc--------------cchhhhHHHHHHHHhc-CCeEEEEEeCCCCcc--ccchhcccc-CCCCCCcEEEEeecchhh
Q 047930 233 TLHE--------------ETESGRARSLCNRLKK-EKRILVILDNIWENL--DFQAVGIPH-GDGHKGSKVLLTARSLDV 294 (395)
Q Consensus 233 ~~~~--------------~~~~~~~~~l~~~l~~-~kr~LlVlDdv~~~~--~~~~l~~~l-~~~~~gs~iivTtR~~~v 294 (395)
.... ......+..+...+.. +.+++|||||+...+ ....+...+ .....+.++|||||...-
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~~ 164 (903)
T PRK04841 85 ATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLPP 164 (903)
T ss_pred hcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCCC
Confidence 1111 0111223345555543 678999999996542 222222222 233456788899997421
Q ss_pred h--hhcCCCcceeecC----CCChHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHHHHHHHHHhhC
Q 047930 295 L--SRKMDSQQNFSFD----VLKEDEAWSLFKKMAGDYIEGSEFKWVAREVAKECAGLPVSIVTVARALRN 359 (395)
Q Consensus 295 a--~~~~~~~~~~~l~----~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~i~~~l~~ 359 (395)
. ...........+. +|+.+|+.+||....+.... .+...+|.+.|+|.|+++..++..+..
T Consensus 165 ~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~~~----~~~~~~l~~~t~Gwp~~l~l~~~~~~~ 231 (903)
T PRK04841 165 LGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSPIE----AAESSRLCDDVEGWATALQLIALSARQ 231 (903)
T ss_pred CchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCCCC----HHHHHHHHHHhCChHHHHHHHHHHHhh
Confidence 1 0000112244555 99999999999887764332 224678999999999999998877753
No 10
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.16 E-value=1.7e-09 Score=100.49 Aligned_cols=205 Identities=17% Similarity=0.107 Sum_probs=116.3
Q ss_pred ccchhchHHHHHHHHHHhc-----CCCceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHH
Q 047930 153 YEAFESRMSTLNDILDALK-----NPDVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFA 227 (395)
Q Consensus 153 ~~~~~gr~~~~~~l~~~l~-----~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 227 (395)
...|+|++..++.|..++. ......+.++|++|+|||+||+.+.+..... + ..+..+....... +...+
T Consensus 3 ~~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~--~---~~~~~~~~~~~~~-l~~~l 76 (305)
T TIGR00635 3 LAEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVN--L---KITSGPALEKPGD-LAAIL 76 (305)
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCC--E---EEeccchhcCchh-HHHHH
Confidence 4579999999998888775 3345678899999999999999999876532 2 1222221112222 22222
Q ss_pred HHhCCCc-------cccchhhhHHHHHHHHhcCCeEEEEEeCCCCccccchhccccCCCCCCcEEEEeecchhhhhhcCC
Q 047930 228 DKLGLTL-------HEETESGRARSLCNRLKKEKRILVILDNIWENLDFQAVGIPHGDGHKGSKVLLTARSLDVLSRKMD 300 (395)
Q Consensus 228 ~~l~~~~-------~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iivTtR~~~va~~~~~ 300 (395)
..++... +..+ ......+...+. +.+..+|+++..+...+.. +++ +.+-|..||+...+......
T Consensus 77 ~~~~~~~vl~iDEi~~l~-~~~~e~l~~~~~-~~~~~~v~~~~~~~~~~~~---~~~---~~~li~~t~~~~~l~~~l~s 148 (305)
T TIGR00635 77 TNLEEGDVLFIDEIHRLS-PAVEELLYPAME-DFRLDIVIGKGPSARSVRL---DLP---PFTLVGATTRAGMLTSPLRD 148 (305)
T ss_pred HhcccCCEEEEehHhhhC-HHHHHHhhHHHh-hhheeeeeccCccccceee---cCC---CeEEEEecCCccccCHHHHh
Confidence 2222111 0000 011122333333 3445556665544433321 111 24455667776443221111
Q ss_pred -CcceeecCCCChHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHHHHHHHHHhh------C--C-CHHHHHHHHH
Q 047930 301 -SQQNFSFDVLKEDEAWSLFKKMAGDYIEGSEFKWVAREVAKECAGLPVSIVTVARALR------N--K-RLFEWKDALE 370 (395)
Q Consensus 301 -~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~i~~~l~------~--~-~~~~w~~~l~ 370 (395)
....+++++++.++..+++.+.+......- -.+....|++.|+|.|-.+..++..+. + . +.+..+.++.
T Consensus 149 R~~~~~~l~~l~~~e~~~il~~~~~~~~~~~-~~~al~~ia~~~~G~pR~~~~ll~~~~~~a~~~~~~~it~~~v~~~l~ 227 (305)
T TIGR00635 149 RFGIILRLEFYTVEELAEIVSRSAGLLNVEI-EPEAALEIARRSRGTPRIANRLLRRVRDFAQVRGQKIINRDIALKALE 227 (305)
T ss_pred hcceEEEeCCCCHHHHHHHHHHHHHHhCCCc-CHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHcCCCCcCHHHHHHHHH
Confidence 234689999999999999998885322211 234678899999999987665554431 1 1 5566666666
Q ss_pred Hh
Q 047930 371 QL 372 (395)
Q Consensus 371 ~l 372 (395)
.+
T Consensus 228 ~l 229 (305)
T TIGR00635 228 ML 229 (305)
T ss_pred Hh
Confidence 64
No 11
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.14 E-value=7.9e-10 Score=101.32 Aligned_cols=179 Identities=16% Similarity=0.151 Sum_probs=109.1
Q ss_pred cccccchhchHHHH---HHHHHHhcCCCceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHH
Q 047930 150 NKDYEAFESRMSTL---NDILDALKNPDVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEF 226 (395)
Q Consensus 150 ~~~~~~~~gr~~~~---~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 226 (395)
|.....++|.+..+ .-|...+..+++....+||++|+||||||+.+....... | ..++...+-.+-++++
T Consensus 20 P~~lde~vGQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~--f-----~~~sAv~~gvkdlr~i 92 (436)
T COG2256 20 PKSLDEVVGQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTTNAA--F-----EALSAVTSGVKDLREI 92 (436)
T ss_pred CCCHHHhcChHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhhCCc--e-----EEeccccccHHHHHHH
Confidence 34455666655443 234455667888888999999999999999999865532 3 3333332222222333
Q ss_pred HHHhCCCccccchhhhHHHHHHHHhcCCeEEEEEeCCCCcc-ccchhccccCCCCCCcEEEE--eecchhhh--hhcCCC
Q 047930 227 ADKLGLTLHEETESGRARSLCNRLKKEKRILVILDNIWENL-DFQAVGIPHGDGHKGSKVLL--TARSLDVL--SRKMDS 301 (395)
Q Consensus 227 ~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~-~~~~l~~~l~~~~~gs~iiv--TtR~~~va--~~~~~~ 301 (395)
++ .-.+....+++.+|++|+|..-. .-++. .+|.-.+|.-|+| ||.|.... ....+.
T Consensus 93 ~e----------------~a~~~~~~gr~tiLflDEIHRfnK~QQD~--lLp~vE~G~iilIGATTENPsF~ln~ALlSR 154 (436)
T COG2256 93 IE----------------EARKNRLLGRRTILFLDEIHRFNKAQQDA--LLPHVENGTIILIGATTENPSFELNPALLSR 154 (436)
T ss_pred HH----------------HHHHHHhcCCceEEEEehhhhcChhhhhh--hhhhhcCCeEEEEeccCCCCCeeecHHHhhh
Confidence 32 22223334789999999995432 11222 2334556776666 66665422 234567
Q ss_pred cceeecCCCChHHHHHHHHHhhC-CC-----CCCCchHHHHHHHHHHcCCchHHHHHH
Q 047930 302 QQNFSFDVLKEDEAWSLFKKMAG-DY-----IEGSEFKWVAREVAKECAGLPVSIVTV 353 (395)
Q Consensus 302 ~~~~~l~~L~~~e~~~lf~~~~~-~~-----~~~~~~~~~~~~i~~~c~GlPlai~~i 353 (395)
..++.+++|+.++...++.+.+- .. ....--.+...-++..++|---+.-..
T Consensus 155 ~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aLN~ 212 (436)
T COG2256 155 ARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRALNL 212 (436)
T ss_pred hheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHHHHH
Confidence 78999999999999999998442 11 111112346678899999986544333
No 12
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.14 E-value=7.5e-10 Score=106.87 Aligned_cols=196 Identities=18% Similarity=0.190 Sum_probs=116.8
Q ss_pred cccccchhchHHHHHH---HHHHhcCCCceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHH
Q 047930 150 NKDYEAFESRMSTLND---ILDALKNPDVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEF 226 (395)
Q Consensus 150 ~~~~~~~~gr~~~~~~---l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 226 (395)
|.....|+|++..+.. +..++.......+.++|++|+||||||+.+++..... | +.++....-..-++.+
T Consensus 8 P~~l~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~~~~--~-----~~l~a~~~~~~~ir~i 80 (413)
T PRK13342 8 PKTLDEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGATDAP--F-----EALSAVTSGVKDLREV 80 (413)
T ss_pred CCCHHHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHhCCC--E-----EEEecccccHHHHHHH
Confidence 3445678888877655 7777777777788999999999999999999876422 2 2222211111111222
Q ss_pred HHHhCCCccccchhhhHHHHHHHHhcCCeEEEEEeCCCCcc--ccchhccccCCCCCCcEEEE--eecchh--hhhhcCC
Q 047930 227 ADKLGLTLHEETESGRARSLCNRLKKEKRILVILDNIWENL--DFQAVGIPHGDGHKGSKVLL--TARSLD--VLSRKMD 300 (395)
Q Consensus 227 ~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iiv--TtR~~~--va~~~~~ 300 (395)
++. .......+++.+|+||+++... ..+.+...+. .|..++| ||.+.. +......
T Consensus 81 i~~----------------~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l~~aL~S 141 (413)
T PRK13342 81 IEE----------------ARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFEVNPALLS 141 (413)
T ss_pred HHH----------------HHHhhhcCCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhccHHHhc
Confidence 211 1111123578899999998653 3333433332 2444444 344432 2122334
Q ss_pred CcceeecCCCChHHHHHHHHHhhCCC-CCC-CchHHHHHHHHHHcCCchHHHHHHHHHhh---CC-CHHHHHHHHHH
Q 047930 301 SQQNFSFDVLKEDEAWSLFKKMAGDY-IEG-SEFKWVAREVAKECAGLPVSIVTVARALR---NK-RLFEWKDALEQ 371 (395)
Q Consensus 301 ~~~~~~l~~L~~~e~~~lf~~~~~~~-~~~-~~~~~~~~~i~~~c~GlPlai~~i~~~l~---~~-~~~~w~~~l~~ 371 (395)
....+.+.+++.++...++.+.+... ... .-..+..+.|++.|+|.|..+..+..... .. +.+.-+.++..
T Consensus 142 R~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le~~~~~~~~It~~~v~~~~~~ 218 (413)
T PRK13342 142 RAQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLLELAALGVDSITLELLEEALQK 218 (413)
T ss_pred cceeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCCCHHHHHHHHhh
Confidence 45789999999999999999876421 111 22245678899999999987755544432 11 55555555544
No 13
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.09 E-value=5.8e-09 Score=97.75 Aligned_cols=193 Identities=15% Similarity=0.076 Sum_probs=105.4
Q ss_pred cccccchhchHHHHHHHHHHhc-----CCCceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHH
Q 047930 150 NKDYEAFESRMSTLNDILDALK-----NPDVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQG 224 (395)
Q Consensus 150 ~~~~~~~~gr~~~~~~l~~~l~-----~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 224 (395)
|.....|+|++..++.+...+. ......+.++|++|+|||+||+.+++..... + .++..+.. .....+.
T Consensus 21 P~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~--~---~~~~~~~~-~~~~~l~ 94 (328)
T PRK00080 21 PKSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVN--I---RITSGPAL-EKPGDLA 94 (328)
T ss_pred cCCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCC--e---EEEecccc-cChHHHH
Confidence 3456789999999888776664 2345678899999999999999999987532 1 12222211 1111222
Q ss_pred HHHHHhCCCc----cccc--hhhhHHHHHHHHhcCCeEEEEEeCCCCccccchhccccCCCCCCcEEEEeecchhhhhhc
Q 047930 225 EFADKLGLTL----HEET--ESGRARSLCNRLKKEKRILVILDNIWENLDFQAVGIPHGDGHKGSKVLLTARSLDVLSRK 298 (395)
Q Consensus 225 ~i~~~l~~~~----~~~~--~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iivTtR~~~va~~~ 298 (395)
.++..+.... ++.. .....+.+...+. +.+..+++|+..+...+. ..+ .+.+-|..||+...+....
T Consensus 95 ~~l~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e-~~~~~~~l~~~~~~~~~~---~~l---~~~~li~at~~~~~l~~~L 167 (328)
T PRK00080 95 AILTNLEEGDVLFIDEIHRLSPVVEEILYPAME-DFRLDIMIGKGPAARSIR---LDL---PPFTLIGATTRAGLLTSPL 167 (328)
T ss_pred HHHHhcccCCEEEEecHhhcchHHHHHHHHHHH-hcceeeeeccCcccccee---ecC---CCceEEeecCCcccCCHHH
Confidence 2332222110 0000 0001111222222 233444444433222111 011 1234455666654332211
Q ss_pred CC-CcceeecCCCChHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHHHHHHHHH
Q 047930 299 MD-SQQNFSFDVLKEDEAWSLFKKMAGDYIEGSEFKWVAREVAKECAGLPVSIVTVARA 356 (395)
Q Consensus 299 ~~-~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~i~~~ 356 (395)
.. ....+++++++.++..+++.+.+......- -.+....|++.|+|.|-.+..+...
T Consensus 168 ~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~~-~~~~~~~ia~~~~G~pR~a~~~l~~ 225 (328)
T PRK00080 168 RDRFGIVQRLEFYTVEELEKIVKRSARILGVEI-DEEGALEIARRSRGTPRIANRLLRR 225 (328)
T ss_pred HHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCc-CHHHHHHHHHHcCCCchHHHHHHHH
Confidence 11 234689999999999999998885432221 2346889999999999866666554
No 14
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.09 E-value=7.6e-09 Score=103.23 Aligned_cols=182 Identities=14% Similarity=0.175 Sum_probs=117.1
Q ss_pred cccccchhchHHHHHHHHHHhcCCCc-eEEEEEecCCCcHHHHHHHHHHHhcccCCC-------------------CEEE
Q 047930 150 NKDYEAFESRMSTLNDILDALKNPDV-NMLGIYGMGGIGKTTLAKEVARKAENEKLF-------------------DQVI 209 (395)
Q Consensus 150 ~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f-------------------~~~~ 209 (395)
+.....++|.+..++.|.+++..++. ..+.++|..|+||||+|+.+.+.......+ ..++
T Consensus 12 PqtFdEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~Dvi 91 (830)
T PRK07003 12 PKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYV 91 (830)
T ss_pred CCcHHHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceEE
Confidence 45567889999999999999887664 455799999999999999988865432111 1122
Q ss_pred EEEeCCcCCHHHHHHHHHHHhCCCccccchhhhHHHHHHHHh----cCCeEEEEEeCCCCcc--ccchhccccCCCCCCc
Q 047930 210 FVEVSQIQDIRKIQGEFADKLGLTLHEETESGRARSLCNRLK----KEKRILVILDNIWENL--DFQAVGIPHGDGHKGS 283 (395)
Q Consensus 210 wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~~--~~~~l~~~l~~~~~gs 283 (395)
+++.+....+ +.+..+.+.+. .++.-++|||++.... .++.+...+.....+.
T Consensus 92 EIDAas~rgV---------------------DdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v 150 (830)
T PRK07003 92 EMDAASNRGV---------------------DEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHV 150 (830)
T ss_pred EecccccccH---------------------HHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCe
Confidence 2222211111 11222222221 2445689999997664 4666655554444577
Q ss_pred EEEEeecch-hhhhhcCCCcceeecCCCChHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchH-HHHHH
Q 047930 284 KVLLTARSL-DVLSRKMDSQQNFSFDVLKEDEAWSLFKKMAGDYIEGSEFKWVAREVAKECAGLPV-SIVTV 353 (395)
Q Consensus 284 ~iivTtR~~-~va~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPl-ai~~i 353 (395)
++|+||.+. .+.....+.+..+++.+++.++..+.+.+.+..+...- -.+....|++.++|..- ++..+
T Consensus 151 ~FILaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~i-d~eAL~lIA~~A~GsmRdALsLL 221 (830)
T PRK07003 151 KFILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIAF-EPQALRLLARAAQGSMRDALSLT 221 (830)
T ss_pred EEEEEECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHHHH
Confidence 777777763 44333455667999999999999999998875432221 13457889999988654 55543
No 15
>PRK06893 DNA replication initiation factor; Validated
Probab=99.03 E-value=4.5e-09 Score=93.15 Aligned_cols=154 Identities=16% Similarity=0.164 Sum_probs=94.4
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCccccchhhhHHHHHHHHhcC
Q 047930 174 DVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFADKLGLTLHEETESGRARSLCNRLKKE 253 (395)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 253 (395)
..+.+.++|++|+|||+|++.+++....+ ...+.|+++.... ... ..+.+.+.
T Consensus 38 ~~~~l~l~G~~G~GKThL~~ai~~~~~~~--~~~~~y~~~~~~~---~~~--------------------~~~~~~~~-- 90 (229)
T PRK06893 38 QQPFFYIWGGKSSGKSHLLKAVSNHYLLN--QRTAIYIPLSKSQ---YFS--------------------PAVLENLE-- 90 (229)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCCeEEeeHHHhh---hhh--------------------HHHHhhcc--
Confidence 34678999999999999999999986543 2335676653110 000 11222222
Q ss_pred CeEEEEEeCCCCc---cccch-hccccCC-CCCCcEEEEeecch----------hhhhhcCCCcceeecCCCChHHHHHH
Q 047930 254 KRILVILDNIWEN---LDFQA-VGIPHGD-GHKGSKVLLTARSL----------DVLSRKMDSQQNFSFDVLKEDEAWSL 318 (395)
Q Consensus 254 kr~LlVlDdv~~~---~~~~~-l~~~l~~-~~~gs~iivTtR~~----------~va~~~~~~~~~~~l~~L~~~e~~~l 318 (395)
+.-+|+|||+|.. ..|+. +...+.. ...|+.+||+|.+. .+.. .+.....++++++++++.+++
T Consensus 91 ~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~s-Rl~~g~~~~l~~pd~e~~~~i 169 (229)
T PRK06893 91 QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLAS-RLTWGEIYQLNDLTDEQKIIV 169 (229)
T ss_pred cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHH-HHhcCCeeeCCCCCHHHHHHH
Confidence 2359999999864 34543 2222211 12355565554432 2222 233456889999999999999
Q ss_pred HHHhhCCCCCCCchHHHHHHHHHHcCCchHHHHHHHHH
Q 047930 319 FKKMAGDYIEGSEFKWVAREVAKECAGLPVSIVTVARA 356 (395)
Q Consensus 319 f~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~i~~~ 356 (395)
+++.+......- -.++.+-|++.+.|..-.+..+-..
T Consensus 170 L~~~a~~~~l~l-~~~v~~~L~~~~~~d~r~l~~~l~~ 206 (229)
T PRK06893 170 LQRNAYQRGIEL-SDEVANFLLKRLDRDMHTLFDALDL 206 (229)
T ss_pred HHHHHHHcCCCC-CHHHHHHHHHhccCCHHHHHHHHHH
Confidence 998885332211 2347788999999887766555443
No 16
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.02 E-value=1.1e-08 Score=96.33 Aligned_cols=203 Identities=14% Similarity=0.114 Sum_probs=114.6
Q ss_pred cccccchhchHHHHHHHHHHhcCCCceEEEEEecCCCcHHHHHHHHHHHhcccCCCC-EEEEEEeCCcCCH--HHHHH--
Q 047930 150 NKDYEAFESRMSTLNDILDALKNPDVNMLGIYGMGGIGKTTLAKEVARKAENEKLFD-QVIFVEVSQIQDI--RKIQG-- 224 (395)
Q Consensus 150 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~-~~~wv~~s~~~~~--~~~~~-- 224 (395)
|.....++|++..++.+..++..+..+.+.++|+.|+||||+|+.+.+..... .+. ..++++++..... ..+..
T Consensus 11 P~~~~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~ 89 (337)
T PRK12402 11 PALLEDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYGD-PWENNFTEFNVADFFDQGKKYLVEDP 89 (337)
T ss_pred CCcHHHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcCc-ccccceEEechhhhhhcchhhhhcCc
Confidence 44456788999999999998887776678899999999999999998876432 222 2344444321100 00000
Q ss_pred HHHHHhCCC-ccccchhhhHHHHHHHHh-----cCCeEEEEEeCCCCcc--ccchhccccCCCCCCcEEEEeecchh-hh
Q 047930 225 EFADKLGLT-LHEETESGRARSLCNRLK-----KEKRILVILDNIWENL--DFQAVGIPHGDGHKGSKVLLTARSLD-VL 295 (395)
Q Consensus 225 ~i~~~l~~~-~~~~~~~~~~~~l~~~l~-----~~kr~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iivTtR~~~-va 295 (395)
.....++.. ............+.+... ...+-+|||||+.... ....+...+......+++|+||.+.. +.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~~ 169 (337)
T PRK12402 90 RFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKLI 169 (337)
T ss_pred chhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhCc
Confidence 000000000 000011122222222221 1334589999996542 22333333322334567877775432 22
Q ss_pred hhcCCCcceeecCCCChHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHHHHHHH
Q 047930 296 SRKMDSQQNFSFDVLKEDEAWSLFKKMAGDYIEGSEFKWVAREVAKECAGLPVSIVTVA 354 (395)
Q Consensus 296 ~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~i~ 354 (395)
.........+.+.+++.++...++.+.+...... --.+....+++.++|.+-.+....
T Consensus 170 ~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~-~~~~al~~l~~~~~gdlr~l~~~l 227 (337)
T PRK12402 170 PPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVD-YDDDGLELIAYYAGGDLRKAILTL 227 (337)
T ss_pred hhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 2223345688999999999999998876432221 123467889999998876654433
No 17
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.99 E-value=1.1e-08 Score=103.90 Aligned_cols=186 Identities=17% Similarity=0.198 Sum_probs=114.8
Q ss_pred cccccchhchHHHHHHHHHHhcCCCceE-EEEEecCCCcHHHHHHHHHHHhcccCC-------------------CCEEE
Q 047930 150 NKDYEAFESRMSTLNDILDALKNPDVNM-LGIYGMGGIGKTTLAKEVARKAENEKL-------------------FDQVI 209 (395)
Q Consensus 150 ~~~~~~~~gr~~~~~~l~~~l~~~~~~v-i~I~G~~GiGKTtLa~~v~~~~~~~~~-------------------f~~~~ 209 (395)
|.....++|.+..+..|.+++..++... +.++|+.|+||||+|+.+++....... |..++
T Consensus 12 P~tFddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~Dvi 91 (944)
T PRK14949 12 PATFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLI 91 (944)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEE
Confidence 3456678999999999988888777655 479999999999999999987643211 11112
Q ss_pred EEEeCCcCCHHHHHHHHHHHhCCCccccchhhhHHHHHHHHhcCCeEEEEEeCCCCc--cccchhccccCCCCCCcEEEE
Q 047930 210 FVEVSQIQDIRKIQGEFADKLGLTLHEETESGRARSLCNRLKKEKRILVILDNIWEN--LDFQAVGIPHGDGHKGSKVLL 287 (395)
Q Consensus 210 wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iiv 287 (395)
++..+....+.. +++|...+. ..-..+++-++|||++... ...+.|...+-....+.++|+
T Consensus 92 EidAas~~kVDd-IReLie~v~----------------~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFIL 154 (944)
T PRK14949 92 EVDAASRTKVDD-TRELLDNVQ----------------YRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLL 154 (944)
T ss_pred EeccccccCHHH-HHHHHHHHH----------------hhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEE
Confidence 221111111111 122222111 0001256779999999755 355555555543344566655
Q ss_pred eecc-hhhhhhcCCCcceeecCCCChHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHHHHHH
Q 047930 288 TARS-LDVLSRKMDSQQNFSFDVLKEDEAWSLFKKMAGDYIEGSEFKWVAREVAKECAGLPVSIVTV 353 (395)
Q Consensus 288 TtR~-~~va~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~i 353 (395)
+|.+ ..+.......+..|++.+|+.++....+.+.+...... .-.+....|++.++|.|--+..+
T Consensus 155 aTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI~-~edeAL~lIA~~S~Gd~R~ALnL 220 (944)
T PRK14949 155 ATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQLP-FEAEALTLLAKAANGSMRDALSL 220 (944)
T ss_pred ECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHH
Confidence 5544 44443334556799999999999999998877432221 12346788999999988644443
No 18
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.99 E-value=4.8e-08 Score=92.71 Aligned_cols=195 Identities=14% Similarity=0.187 Sum_probs=112.3
Q ss_pred cccccchhchHHHHHHHHHHhcCCCc-eEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHHH
Q 047930 150 NKDYEAFESRMSTLNDILDALKNPDV-NMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFAD 228 (395)
Q Consensus 150 ~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 228 (395)
|.....++|.+..++.+...+..++. ..+.++|+.|+||||+|+.+.+.......... .+........++..
T Consensus 12 P~~~~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~-------~pc~~c~~c~~~~~ 84 (363)
T PRK14961 12 PQYFRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITS-------NPCRKCIICKEIEK 84 (363)
T ss_pred CCchhhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCC-------CCCCCCHHHHHHhc
Confidence 34456788999988888888876654 45689999999999999999987542211100 00000000111111
Q ss_pred HhCCCcc-----ccchhhhHHHHHHHHh----cCCeEEEEEeCCCCcc--ccchhccccCCCCCCcEEEEeecch-hhhh
Q 047930 229 KLGLTLH-----EETESGRARSLCNRLK----KEKRILVILDNIWENL--DFQAVGIPHGDGHKGSKVLLTARSL-DVLS 296 (395)
Q Consensus 229 ~l~~~~~-----~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iivTtR~~-~va~ 296 (395)
....... .....+.+..+.+.+. .+++-++|||++.... .++.+...+.......++|++|.+. .+..
T Consensus 85 ~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~ 164 (363)
T PRK14961 85 GLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPK 164 (363)
T ss_pred CCCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhH
Confidence 0000000 0001112223333322 1455699999997654 4555555554444566777766543 3332
Q ss_pred hcCCCcceeecCCCChHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHHHHH
Q 047930 297 RKMDSQQNFSFDVLKEDEAWSLFKKMAGDYIEGSEFKWVAREVAKECAGLPVSIVT 352 (395)
Q Consensus 297 ~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~ 352 (395)
...+....+++.+++.++..+.+...+......- -.+....|++.++|.|-.+..
T Consensus 165 tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~i-~~~al~~ia~~s~G~~R~al~ 219 (363)
T PRK14961 165 TILSRCLQFKLKIISEEKIFNFLKYILIKESIDT-DEYALKLIAYHAHGSMRDALN 219 (363)
T ss_pred HHHhhceEEeCCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHH
Confidence 2334457899999999999999988764322111 123577899999998864433
No 19
>PF13173 AAA_14: AAA domain
Probab=98.98 E-value=2.3e-09 Score=85.98 Aligned_cols=121 Identities=20% Similarity=0.216 Sum_probs=81.0
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCccccchhhhHHHHHHHHhcCC
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFADKLGLTLHEETESGRARSLCNRLKKEK 254 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 254 (395)
.+++.|.|+.|+|||||+++++.+.. ....++|++............+ ....+.+... .+
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~~~~----------------~~~~~~~~~~-~~ 61 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLADPD----------------LLEYFLELIK-PG 61 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHhhhh----------------hHHHHHHhhc-cC
Confidence 46899999999999999999998765 2345677776554321110000 1122333322 36
Q ss_pred eEEEEEeCCCCccccchhccccCCCCCCcEEEEeecchhhhh-----hcCCCcceeecCCCChHHH
Q 047930 255 RILVILDNIWENLDFQAVGIPHGDGHKGSKVLLTARSLDVLS-----RKMDSQQNFSFDVLKEDEA 315 (395)
Q Consensus 255 r~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iivTtR~~~va~-----~~~~~~~~~~l~~L~~~e~ 315 (395)
+.+|+||++....+|......+.+..+..+|++|+.+..... ...+....++|.||+-.|.
T Consensus 62 ~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 62 KKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred CcEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 789999999988888886666656556789999998765431 2234455789999997763
No 20
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.97 E-value=1.4e-08 Score=100.05 Aligned_cols=201 Identities=13% Similarity=0.132 Sum_probs=116.0
Q ss_pred cccccchhchHHHHHHHHHHhcCCCce-EEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHHH
Q 047930 150 NKDYEAFESRMSTLNDILDALKNPDVN-MLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFAD 228 (395)
Q Consensus 150 ~~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 228 (395)
+.....++|.+..++.|.+++..++.. .+.++|..|+||||+|+.+.+.......-.. --+. +..+......+.|..
T Consensus 12 PqtFddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~-~g~~-~~PCG~C~sC~~I~a 89 (700)
T PRK12323 12 PRDFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGE-GGIT-AQPCGQCRACTEIDA 89 (700)
T ss_pred CCcHHHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcccc-ccCC-CCCCcccHHHHHHHc
Confidence 455677899999999999998877654 4588999999999999999887543110000 0000 000000111111110
Q ss_pred Hh-----CCCccccchhhhHHHHHHHHh----cCCeEEEEEeCCCCc--cccchhccccCCCCCCcEEEEeec-chhhhh
Q 047930 229 KL-----GLTLHEETESGRARSLCNRLK----KEKRILVILDNIWEN--LDFQAVGIPHGDGHKGSKVLLTAR-SLDVLS 296 (395)
Q Consensus 229 ~l-----~~~~~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR-~~~va~ 296 (395)
.- ..+.......+.+..+.+.+. .++.-++|||++... ..++.+...+-....++++|++|. ...+..
T Consensus 90 G~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLlp 169 (700)
T PRK12323 90 GRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPV 169 (700)
T ss_pred CCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhhh
Confidence 00 000000011122233333322 256679999999765 355666555544344556555554 455544
Q ss_pred hcCCCcceeecCCCChHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHHHHHH
Q 047930 297 RKMDSQQNFSFDVLKEDEAWSLFKKMAGDYIEGSEFKWVAREVAKECAGLPVSIVTV 353 (395)
Q Consensus 297 ~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~i 353 (395)
...+.+..+++.+++.++..+.+.+.+.......+ .+..+.|++.++|.|.-...+
T Consensus 170 TIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~~d-~eAL~~IA~~A~Gs~RdALsL 225 (700)
T PRK12323 170 TVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAHE-VNALRLLAQAAQGSMRDALSL 225 (700)
T ss_pred HHHHHHHhcccCCCChHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCCHHHHHHH
Confidence 44456679999999999999999887743222222 235678999999999755444
No 21
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.97 E-value=2.7e-08 Score=92.65 Aligned_cols=176 Identities=17% Similarity=0.190 Sum_probs=115.5
Q ss_pred cchhchHHHHHHHHHHhcCCCc-eEEEEEecCCCcHHHHHHHHHHHhc----ccCCCCEEEEEEe-CCcCCHHHHHHHHH
Q 047930 154 EAFESRMSTLNDILDALKNPDV-NMLGIYGMGGIGKTTLAKEVARKAE----NEKLFDQVIFVEV-SQIQDIRKIQGEFA 227 (395)
Q Consensus 154 ~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~----~~~~f~~~~wv~~-s~~~~~~~~~~~i~ 227 (395)
..++|.+...+.+..++..++. +...++|+.|+||||+|+.++...- ...|+|...|... +.....++ .+++.
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~-ir~~~ 82 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD-IRNII 82 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-HHHHH
Confidence 3567888888888888876654 5668999999999999999998642 2346676666442 22233333 33333
Q ss_pred HHhCCCccccchhhhHHHHHHHHhcCCeEEEEEeCCC--CccccchhccccCCCCCCcEEEEeecchh-hhhhcCCCcce
Q 047930 228 DKLGLTLHEETESGRARSLCNRLKKEKRILVILDNIW--ENLDFQAVGIPHGDGHKGSKVLLTARSLD-VLSRKMDSQQN 304 (395)
Q Consensus 228 ~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~--~~~~~~~l~~~l~~~~~gs~iivTtR~~~-va~~~~~~~~~ 304 (395)
+.+..... .+++-++|+|+++ +...++.+...+.....++.+|++|.+.+ +.......+..
T Consensus 83 ~~~~~~p~----------------~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~~ 146 (313)
T PRK05564 83 EEVNKKPY----------------EGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQI 146 (313)
T ss_pred HHHhcCcc----------------cCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhcee
Confidence 33322110 1345567777764 44567777777766667888888887643 22333455679
Q ss_pred eecCCCChHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHHHH
Q 047930 305 FSFDVLKEDEAWSLFKKMAGDYIEGSEFKWVAREVAKECAGLPVSIV 351 (395)
Q Consensus 305 ~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~ 351 (395)
+++.++++++....+.+.... .+ .+.++.++..++|.|..+.
T Consensus 147 ~~~~~~~~~~~~~~l~~~~~~--~~---~~~~~~l~~~~~g~~~~a~ 188 (313)
T PRK05564 147 YKLNRLSKEEIEKFISYKYND--IK---EEEKKSAIAFSDGIPGKVE 188 (313)
T ss_pred eeCCCcCHHHHHHHHHHHhcC--CC---HHHHHHHHHHcCCCHHHHH
Confidence 999999999998888766431 11 2236678899999886543
No 22
>PLN03025 replication factor C subunit; Provisional
Probab=98.96 E-value=2.2e-08 Score=93.46 Aligned_cols=187 Identities=13% Similarity=0.063 Sum_probs=111.5
Q ss_pred ccccccchhchHHHHHHHHHHhcCCCceEEEEEecCCCcHHHHHHHHHHHhcccCCCC-EEEEEEeCCcCCHHHHHHHHH
Q 047930 149 SNKDYEAFESRMSTLNDILDALKNPDVNMLGIYGMGGIGKTTLAKEVARKAENEKLFD-QVIFVEVSQIQDIRKIQGEFA 227 (395)
Q Consensus 149 ~~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~-~~~wv~~s~~~~~~~~~~~i~ 227 (395)
.|.....++|..+.+..|..++..++.+.+.++|++|+||||+|..+++..... .|. .++-++.+...... ..++++
T Consensus 8 rP~~l~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~-~~~~~~~eln~sd~~~~~-~vr~~i 85 (319)
T PLN03025 8 RPTKLDDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGP-NYKEAVLELNASDDRGID-VVRNKI 85 (319)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhcc-cCccceeeecccccccHH-HHHHHH
Confidence 345567788988888888887777777778899999999999999999876432 122 23333333332322 222222
Q ss_pred HHhCCCccccchhhhHHHHHHHHhcCCeEEEEEeCCCCcc--ccchhccccCCCCCCcEEEEeecch-hhhhhcCCCcce
Q 047930 228 DKLGLTLHEETESGRARSLCNRLKKEKRILVILDNIWENL--DFQAVGIPHGDGHKGSKVLLTARSL-DVLSRKMDSQQN 304 (395)
Q Consensus 228 ~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iivTtR~~-~va~~~~~~~~~ 304 (395)
+.+...... +..++.-+++||+++... ....+...+......+++|+++... .+..........
T Consensus 86 ~~~~~~~~~-------------~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~ 152 (319)
T PLN03025 86 KMFAQKKVT-------------LPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAI 152 (319)
T ss_pred HHHHhcccc-------------CCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhc
Confidence 221110000 001356799999997653 2223333332223456677766542 221112233468
Q ss_pred eecCCCChHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHHHH
Q 047930 305 FSFDVLKEDEAWSLFKKMAGDYIEGSEFKWVAREVAKECAGLPVSIV 351 (395)
Q Consensus 305 ~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~ 351 (395)
+++.++++++....+...+......-+ .+....|++.|+|..-.+.
T Consensus 153 i~f~~l~~~~l~~~L~~i~~~egi~i~-~~~l~~i~~~~~gDlR~al 198 (319)
T PLN03025 153 VRFSRLSDQEILGRLMKVVEAEKVPYV-PEGLEAIIFTADGDMRQAL 198 (319)
T ss_pred ccCCCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCCHHHHH
Confidence 999999999999999888743222111 2357788889988775443
No 23
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.95 E-value=5.2e-08 Score=91.10 Aligned_cols=186 Identities=14% Similarity=0.113 Sum_probs=110.4
Q ss_pred cccccchhchHHHHHHHHHHhcCCCceEEEEEecCCCcHHHHHHHHHHHhcccCCCCE-EEEEEeCCcCCHHHHHHHHHH
Q 047930 150 NKDYEAFESRMSTLNDILDALKNPDVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQ-VIFVEVSQIQDIRKIQGEFAD 228 (395)
Q Consensus 150 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~-~~wv~~s~~~~~~~~~~~i~~ 228 (395)
|.....++|++..++.+..++..+..+.+.++|+.|+||||+++.+.+...... +.. .+-++.+...... ...+.+.
T Consensus 13 P~~~~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~-~~~~~i~~~~~~~~~~~-~~~~~i~ 90 (319)
T PRK00440 13 PRTLDEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELYGED-WRENFLELNASDERGID-VIRNKIK 90 (319)
T ss_pred CCcHHHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCc-cccceEEeccccccchH-HHHHHHH
Confidence 455567889999999999998877777789999999999999999998764322 211 2222222222221 1111111
Q ss_pred HhCCCccccchhhhHHHHHHHHhcCCeEEEEEeCCCCcc--ccchhccccCCCCCCcEEEEeecch-hhhhhcCCCccee
Q 047930 229 KLGLTLHEETESGRARSLCNRLKKEKRILVILDNIWENL--DFQAVGIPHGDGHKGSKVLLTARSL-DVLSRKMDSQQNF 305 (395)
Q Consensus 229 ~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iivTtR~~-~va~~~~~~~~~~ 305 (395)
.+....+ .....+-++++|++.... ....+...+......+.+|+++... .+..........+
T Consensus 91 ~~~~~~~--------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~ 156 (319)
T PRK00440 91 EFARTAP--------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVF 156 (319)
T ss_pred HHHhcCC--------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhhee
Confidence 1110000 001235689999986542 2333433333333456677766432 2211112234578
Q ss_pred ecCCCChHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHHHHH
Q 047930 306 SFDVLKEDEAWSLFKKMAGDYIEGSEFKWVAREVAKECAGLPVSIVT 352 (395)
Q Consensus 306 ~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~ 352 (395)
++.++++++....+...+......- -.+....+++.++|.+--+..
T Consensus 157 ~~~~l~~~ei~~~l~~~~~~~~~~i-~~~al~~l~~~~~gd~r~~~~ 202 (319)
T PRK00440 157 RFSPLKKEAVAERLRYIAENEGIEI-TDDALEAIYYVSEGDMRKAIN 202 (319)
T ss_pred eeCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHH
Confidence 9999999999999988774322211 133678899999998876443
No 24
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.94 E-value=1.5e-08 Score=89.91 Aligned_cols=169 Identities=15% Similarity=0.167 Sum_probs=102.4
Q ss_pred hHHHHHHHHHHhcCCCceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCccccc
Q 047930 159 RMSTLNDILDALKNPDVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFADKLGLTLHEET 238 (395)
Q Consensus 159 r~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~ 238 (395)
....++.+..++.......+.|+|+.|+|||+||+.+++..... ....++++++.-.. ..
T Consensus 22 ~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~~--~~~~~~i~~~~~~~------~~------------ 81 (226)
T TIGR03420 22 NAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEER--GKSAIYLPLAELAQ------AD------------ 81 (226)
T ss_pred cHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHhc--CCcEEEEeHHHHHH------hH------------
Confidence 44566777777655566789999999999999999999876532 33456665543211 00
Q ss_pred hhhhHHHHHHHHhcCCeEEEEEeCCCCcc---ccch-hccccCC-CCCCcEEEEeecchhhh--------hhcCCCccee
Q 047930 239 ESGRARSLCNRLKKEKRILVILDNIWENL---DFQA-VGIPHGD-GHKGSKVLLTARSLDVL--------SRKMDSQQNF 305 (395)
Q Consensus 239 ~~~~~~~l~~~l~~~kr~LlVlDdv~~~~---~~~~-l~~~l~~-~~~gs~iivTtR~~~va--------~~~~~~~~~~ 305 (395)
..+.+.+. +.-+|||||++... .|.. +...+.. ...+.++|+||+..... .........+
T Consensus 82 -----~~~~~~~~--~~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~~~i 154 (226)
T TIGR03420 82 -----PEVLEGLE--QADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGLVF 154 (226)
T ss_pred -----HHHHhhcc--cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcCeeE
Confidence 01112222 23489999997543 3332 3322211 12234788888753211 1111224579
Q ss_pred ecCCCChHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHHHHHHHH
Q 047930 306 SFDVLKEDEAWSLFKKMAGDYIEGSEFKWVAREVAKECAGLPVSIVTVAR 355 (395)
Q Consensus 306 ~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~i~~ 355 (395)
++.++++++...++...+..... +--.+..+.+++.+.|.|..+..+..
T Consensus 155 ~l~~l~~~e~~~~l~~~~~~~~~-~~~~~~l~~L~~~~~gn~r~L~~~l~ 203 (226)
T TIGR03420 155 QLPPLSDEEKIAALQSRAARRGL-QLPDEVADYLLRHGSRDMGSLMALLD 203 (226)
T ss_pred ecCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHhccCCHHHHHHHHH
Confidence 99999999999999876532111 11234567888889999988776643
No 25
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=1.5e-07 Score=88.61 Aligned_cols=197 Identities=18% Similarity=0.255 Sum_probs=129.0
Q ss_pred hhchHHHHHHHHHHhc----CCCceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHHHHhC
Q 047930 156 FESRMSTLNDILDALK----NPDVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFADKLG 231 (395)
Q Consensus 156 ~~gr~~~~~~l~~~l~----~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 231 (395)
+.+|+.+++++...|. +..+..+.|+|..|+|||+.++.+.+.......-..+++|++....+..+++..|+..++
T Consensus 19 l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~ 98 (366)
T COG1474 19 LPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKLG 98 (366)
T ss_pred ccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHHcC
Confidence 7799999999887765 445556999999999999999999998765422222799999999999999999999996
Q ss_pred C-CccccchhhhHHHHHHHHhc-CCeEEEEEeCCCCcccc--chhccccC-CCCCCcEEEE--eecchhhh-------hh
Q 047930 232 L-TLHEETESGRARSLCNRLKK-EKRILVILDNIWENLDF--QAVGIPHG-DGHKGSKVLL--TARSLDVL-------SR 297 (395)
Q Consensus 232 ~-~~~~~~~~~~~~~l~~~l~~-~kr~LlVlDdv~~~~~~--~~l~~~l~-~~~~gs~iiv--TtR~~~va-------~~ 297 (395)
. +....+..+....+.+.+.. ++.+++|||+++....- +.+...+. ....+++|++ .+.+.... ..
T Consensus 99 ~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~ld~rv~s 178 (366)
T COG1474 99 KVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDYLDPRVKS 178 (366)
T ss_pred CCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHHhhhhhhh
Confidence 2 33334555666777777753 67899999999765322 22222221 1222455433 33333221 11
Q ss_pred cCCCcceeecCCCChHHHHHHHHHhhC----CCCCCCchHHHHHHHHHHcCC-chHHHHHH
Q 047930 298 KMDSQQNFSFDVLKEDEAWSLFKKMAG----DYIEGSEFKWVAREVAKECAG-LPVSIVTV 353 (395)
Q Consensus 298 ~~~~~~~~~l~~L~~~e~~~lf~~~~~----~~~~~~~~~~~~~~i~~~c~G-lPlai~~i 353 (395)
..+. ..+..+|-+.+|-.+++..++. ....+++.-+.+..++..-+| -=.||..+
T Consensus 179 ~l~~-~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidil 238 (366)
T COG1474 179 SLGP-SEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDIL 238 (366)
T ss_pred ccCc-ceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHH
Confidence 2222 3488999999999999998873 223334444455555555554 34454444
No 26
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.92 E-value=6e-08 Score=95.15 Aligned_cols=198 Identities=16% Similarity=0.121 Sum_probs=113.7
Q ss_pred cccccchhchHHHHHHHHHHhcCCCce-EEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHHH
Q 047930 150 NKDYEAFESRMSTLNDILDALKNPDVN-MLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFAD 228 (395)
Q Consensus 150 ~~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 228 (395)
|.....++|.+...+.|..++..++.. .+.++|+.|+||||+|+.+++.....+.+...+|.|.+.. .+......-+.
T Consensus 10 P~~~~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~-~i~~~~h~dv~ 88 (504)
T PRK14963 10 PITFDEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCL-AVRRGAHPDVL 88 (504)
T ss_pred CCCHHHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhH-HHhcCCCCceE
Confidence 344567889888888888888766654 4589999999999999999887643222221222221100 00000000000
Q ss_pred HhCCCccccchhhhHHHHHHHHh----cCCeEEEEEeCCCCc--cccchhccccCCCCCCcEEEEeec-chhhhhhcCCC
Q 047930 229 KLGLTLHEETESGRARSLCNRLK----KEKRILVILDNIWEN--LDFQAVGIPHGDGHKGSKVLLTAR-SLDVLSRKMDS 301 (395)
Q Consensus 229 ~l~~~~~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR-~~~va~~~~~~ 301 (395)
.+... .....+.+..+.+.+. .+++-++|||+++.. ..+..+...+......+.+|++|. ...+.......
T Consensus 89 el~~~--~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~SR 166 (504)
T PRK14963 89 EIDAA--SNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSR 166 (504)
T ss_pred Eeccc--ccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhcc
Confidence 00000 0011112223333322 145679999999754 345556555544344555555554 34443333455
Q ss_pred cceeecCCCChHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHHHH
Q 047930 302 QQNFSFDVLKEDEAWSLFKKMAGDYIEGSEFKWVAREVAKECAGLPVSIV 351 (395)
Q Consensus 302 ~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~ 351 (395)
...+++.+++.++....+.+.+.......+ .+....|++.++|.+--+.
T Consensus 167 c~~~~f~~ls~~el~~~L~~i~~~egi~i~-~~Al~~ia~~s~GdlR~al 215 (504)
T PRK14963 167 TQHFRFRRLTEEEIAGKLRRLLEAEGREAE-PEALQLVARLADGAMRDAE 215 (504)
T ss_pred eEEEEecCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCCHHHHH
Confidence 678999999999999999988743222211 2367889999999986553
No 27
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.91 E-value=6.7e-09 Score=83.64 Aligned_cols=116 Identities=27% Similarity=0.338 Sum_probs=79.8
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhccc---CCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCccc-cchhhhHHHHHHH
Q 047930 174 DVNMLGIYGMGGIGKTTLAKEVARKAENE---KLFDQVIFVEVSQIQDIRKIQGEFADKLGLTLHE-ETESGRARSLCNR 249 (395)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~---~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~l~~~ 249 (395)
+.+++.|+|.+|+|||++++.+.+..... ..-..++|++++...+...+...|+.+++..... .+.......+.+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~ 82 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDA 82 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHH
Confidence 34678999999999999999999875321 0123477999988889999999999999877665 3445566777888
Q ss_pred HhcCCeEEEEEeCCCCc-c--ccchhccccCCCCCCcEEEEeecc
Q 047930 250 LKKEKRILVILDNIWEN-L--DFQAVGIPHGDGHKGSKVLLTARS 291 (395)
Q Consensus 250 l~~~kr~LlVlDdv~~~-~--~~~~l~~~l~~~~~gs~iivTtR~ 291 (395)
+.+.+..+|||||++.. . .++.+... .+ ..+.++|+..+.
T Consensus 83 l~~~~~~~lviDe~~~l~~~~~l~~l~~l-~~-~~~~~vvl~G~~ 125 (131)
T PF13401_consen 83 LDRRRVVLLVIDEADHLFSDEFLEFLRSL-LN-ESNIKVVLVGTP 125 (131)
T ss_dssp HHHCTEEEEEEETTHHHHTHHHHHHHHHH-TC-SCBEEEEEEESS
T ss_pred HHhcCCeEEEEeChHhcCCHHHHHHHHHH-Hh-CCCCeEEEEECh
Confidence 87666789999999764 2 22333222 22 567778887765
No 28
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.91 E-value=3.6e-08 Score=97.46 Aligned_cols=196 Identities=13% Similarity=0.142 Sum_probs=114.5
Q ss_pred cccccchhchHHHHHHHHHHhcCCC-ceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHHH
Q 047930 150 NKDYEAFESRMSTLNDILDALKNPD-VNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFAD 228 (395)
Q Consensus 150 ~~~~~~~~gr~~~~~~l~~~l~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 228 (395)
|.....++|.+.....|..++..++ ...+.++|+.|+||||+|+.+++......... . ..+......+.+..
T Consensus 11 PktFddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~------~-~pCg~C~sC~~I~~ 83 (702)
T PRK14960 11 PRNFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVT------S-TPCEVCATCKAVNE 83 (702)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCC------C-CCCccCHHHHHHhc
Confidence 4556778999999999999888665 45668999999999999999988754321110 0 00011111111111
Q ss_pred HhCCCc-----cccchhhhHHHHHHHHh----cCCeEEEEEeCCCCcc--ccchhccccCCCCCCcEEEEeecc-hhhhh
Q 047930 229 KLGLTL-----HEETESGRARSLCNRLK----KEKRILVILDNIWENL--DFQAVGIPHGDGHKGSKVLLTARS-LDVLS 296 (395)
Q Consensus 229 ~l~~~~-----~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iivTtR~-~~va~ 296 (395)
.-.... ......+.+..+...+. .++.-++|||++.... ....+...+.....+.++|++|.+ ..+..
T Consensus 84 g~hpDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp~ 163 (702)
T PRK14960 84 GRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPI 163 (702)
T ss_pred CCCCceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhhH
Confidence 000000 00001111222222221 2456789999997653 445555444343456677777765 33332
Q ss_pred hcCCCcceeecCCCChHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHHHHHH
Q 047930 297 RKMDSQQNFSFDVLKEDEAWSLFKKMAGDYIEGSEFKWVAREVAKECAGLPVSIVTV 353 (395)
Q Consensus 297 ~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~i 353 (395)
.....+..+++.+++.++....+.+.+......-+ .+....|++.++|.+-.+..+
T Consensus 164 TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~id-~eAL~~IA~~S~GdLRdALnL 219 (702)
T PRK14960 164 TVISRCLQFTLRPLAVDEITKHLGAILEKEQIAAD-QDAIWQIAESAQGSLRDALSL 219 (702)
T ss_pred HHHHhhheeeccCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCCHHHHHHH
Confidence 33455679999999999999999888753322222 235678999999987554433
No 29
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.91 E-value=6e-08 Score=96.83 Aligned_cols=196 Identities=17% Similarity=0.177 Sum_probs=127.7
Q ss_pred ccchhchHHHHHHHHHHhcCCCceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCC-cCCHHHHHHHHHHHhC
Q 047930 153 YEAFESRMSTLNDILDALKNPDVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQ-IQDIRKIQGEFADKLG 231 (395)
Q Consensus 153 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~ 231 (395)
..+.+-|...++.|.+ ..+.+.+.|..|+|.|||||+.+....... -..+.|.++.. +.++..+.+.++..++
T Consensus 18 ~~~~v~R~rL~~~L~~---~~~~RL~li~APAGfGKttl~aq~~~~~~~---~~~v~Wlslde~dndp~rF~~yLi~al~ 91 (894)
T COG2909 18 PDNYVVRPRLLDRLRR---ANDYRLILISAPAGFGKTTLLAQWRELAAD---GAAVAWLSLDESDNDPARFLSYLIAALQ 91 (894)
T ss_pred cccccccHHHHHHHhc---CCCceEEEEeCCCCCcHHHHHHHHHHhcCc---ccceeEeecCCccCCHHHHHHHHHHHHH
Confidence 4455566544444332 347899999999999999999999873221 34589999975 4568888888888876
Q ss_pred CCcccc--------------chhhhHHHHHHHHhc-CCeEEEEEeCCCCc--cccch-hccccCCCCCCcEEEEeecchh
Q 047930 232 LTLHEE--------------TESGRARSLCNRLKK-EKRILVILDNIWEN--LDFQA-VGIPHGDGHKGSKVLLTARSLD 293 (395)
Q Consensus 232 ~~~~~~--------------~~~~~~~~l~~~l~~-~kr~LlVlDdv~~~--~~~~~-l~~~l~~~~~gs~iivTtR~~~ 293 (395)
...+.. +-...+..+...+.. .+++.|||||..-. ..... +.-.+....++-..|+|||+..
T Consensus 92 ~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP 171 (894)
T COG2909 92 QATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRP 171 (894)
T ss_pred HhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCC
Confidence 432221 111234455554432 56899999997432 22222 2222234456788999999853
Q ss_pred hh--hhcCCCcceeec----CCCChHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHHHHHHHHHhh
Q 047930 294 VL--SRKMDSQQNFSF----DVLKEDEAWSLFKKMAGDYIEGSEFKWVAREVAKECAGLPVSIVTVARALR 358 (395)
Q Consensus 294 va--~~~~~~~~~~~l----~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~i~~~l~ 358 (395)
-. ....-....+++ -.|+.+|+-++|....+...+.. -.+.+.+..+|-+-|+..++=.++
T Consensus 172 ~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~Ld~~----~~~~L~~~teGW~~al~L~aLa~~ 238 (894)
T COG2909 172 QLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSLPLDAA----DLKALYDRTEGWAAALQLIALALR 238 (894)
T ss_pred CCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCCCCChH----HHHHHHhhcccHHHHHHHHHHHcc
Confidence 21 001111223333 34899999999998875544433 367899999999999999988888
No 30
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.90 E-value=9.7e-08 Score=93.36 Aligned_cols=198 Identities=14% Similarity=0.159 Sum_probs=114.1
Q ss_pred cccccchhchHHHHHHHHHHhcCCC-ceEEEEEecCCCcHHHHHHHHHHHhcccCCCCE-EEEEEeCCcCCHHHHHHHHH
Q 047930 150 NKDYEAFESRMSTLNDILDALKNPD-VNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQ-VIFVEVSQIQDIRKIQGEFA 227 (395)
Q Consensus 150 ~~~~~~~~gr~~~~~~l~~~l~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~-~~wv~~s~~~~~~~~~~~i~ 227 (395)
|.....++|.+..+..|...+..++ .+.+.++|+.|+||||+|+.+++.......... -.+..+... .....+.
T Consensus 17 P~~f~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C----~~C~~i~ 92 (507)
T PRK06645 17 PSNFAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQC----TNCISFN 92 (507)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCC----hHHHHHh
Confidence 4455678898888888887776554 467889999999999999999987543211100 000000000 0011111
Q ss_pred HHhCCCcc-----ccchhhhHHHHHHHHh----cCCeEEEEEeCCCCc--cccchhccccCCCCCCcEEEE-eecchhhh
Q 047930 228 DKLGLTLH-----EETESGRARSLCNRLK----KEKRILVILDNIWEN--LDFQAVGIPHGDGHKGSKVLL-TARSLDVL 295 (395)
Q Consensus 228 ~~l~~~~~-----~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iiv-TtR~~~va 295 (395)
........ .....+.+..+.+... .+++-++|||+++.. ..++.+...+....+.+.+|+ ||+...+.
T Consensus 93 ~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~ 172 (507)
T PRK06645 93 NHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIP 172 (507)
T ss_pred cCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhh
Confidence 00000000 0001112222222221 246678999999865 346666655544445666654 44444554
Q ss_pred hhcCCCcceeecCCCChHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHHHHH
Q 047930 296 SRKMDSQQNFSFDVLKEDEAWSLFKKMAGDYIEGSEFKWVAREVAKECAGLPVSIVT 352 (395)
Q Consensus 296 ~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~ 352 (395)
.........+++.+++.++....+.+.+.......+ .+....|++.++|.+--+..
T Consensus 173 ~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~ie-~eAL~~Ia~~s~GslR~al~ 228 (507)
T PRK06645 173 ATIISRCQRYDLRRLSFEEIFKLLEYITKQENLKTD-IEALRIIAYKSEGSARDAVS 228 (507)
T ss_pred HHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCCHHHHHH
Confidence 333445678999999999999999988853332222 23567899999998755433
No 31
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.89 E-value=2.2e-08 Score=90.61 Aligned_cols=175 Identities=15% Similarity=0.195 Sum_probs=109.2
Q ss_pred ccchhchHHHHH---HHHHHhcCCCceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHHHH
Q 047930 153 YEAFESRMSTLN---DILDALKNPDVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFADK 229 (395)
Q Consensus 153 ~~~~~gr~~~~~---~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 229 (395)
..+++|.+..+. .|...+.++..+.+.+||++|+||||||+.+.+..+... +.||..|....-..-.+.|.++
T Consensus 137 L~dyvGQ~hlv~q~gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dvR~ife~ 212 (554)
T KOG2028|consen 137 LDDYVGQSHLVGQDGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDVRDIFEQ 212 (554)
T ss_pred HHHhcchhhhcCcchHHHHHHHcCCCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHHHHHHHH
Confidence 344555443332 244445577888999999999999999999998876433 5677776554444444445443
Q ss_pred hCCCccccchhhhHHHHHHHHhcCCeEEEEEeCCCCcc-ccchhccccCCCCCCcEEEE--eecchhhh--hhcCCCcce
Q 047930 230 LGLTLHEETESGRARSLCNRLKKEKRILVILDNIWENL-DFQAVGIPHGDGHKGSKVLL--TARSLDVL--SRKMDSQQN 304 (395)
Q Consensus 230 l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~-~~~~l~~~l~~~~~gs~iiv--TtR~~~va--~~~~~~~~~ 304 (395)
... ...+ .++|.+|++|+|..-. .-+++ .+|...+|+-++| ||.+.... ......+.+
T Consensus 213 aq~--------------~~~l-~krkTilFiDEiHRFNksQQD~--fLP~VE~G~I~lIGATTENPSFqln~aLlSRC~V 275 (554)
T KOG2028|consen 213 AQN--------------EKSL-TKRKTILFIDEIHRFNKSQQDT--FLPHVENGDITLIGATTENPSFQLNAALLSRCRV 275 (554)
T ss_pred HHH--------------HHhh-hcceeEEEeHHhhhhhhhhhhc--ccceeccCceEEEecccCCCccchhHHHHhccce
Confidence 210 1111 2689999999995322 11222 3345667776666 66665431 224566789
Q ss_pred eecCCCChHHHHHHHHHhh---CC------CCCCCc---hHHHHHHHHHHcCCchH
Q 047930 305 FSFDVLKEDEAWSLFKKMA---GD------YIEGSE---FKWVAREVAKECAGLPV 348 (395)
Q Consensus 305 ~~l~~L~~~e~~~lf~~~~---~~------~~~~~~---~~~~~~~i~~~c~GlPl 348 (395)
+-|++|+.++...++.+.. ++ ..+++. -..+.+-++..|+|-.-
T Consensus 276 fvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR 331 (554)
T KOG2028|consen 276 FVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDAR 331 (554)
T ss_pred eEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHH
Confidence 9999999999999998743 21 122221 12456677778888754
No 32
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.86 E-value=5.3e-08 Score=97.30 Aligned_cols=196 Identities=14% Similarity=0.147 Sum_probs=114.7
Q ss_pred cccccchhchHHHHHHHHHHhcCCCceE-EEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHHH
Q 047930 150 NKDYEAFESRMSTLNDILDALKNPDVNM-LGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFAD 228 (395)
Q Consensus 150 ~~~~~~~~gr~~~~~~l~~~l~~~~~~v-i~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 228 (395)
|.....++|.+..+..|...+..++... +.++|+.|+||||+|+.+.+.......+. +.++......+.|..
T Consensus 12 P~~f~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~-------~~pCg~C~~C~~i~~ 84 (647)
T PRK07994 12 PQTFAEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGIT-------ATPCGECDNCREIEQ 84 (647)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCC-------CCCCCCCHHHHHHHc
Confidence 4556778999999998888888766544 57999999999999999987654321100 001111111112211
Q ss_pred HhCCCc---cc--cchhhhHHHHHHHHh----cCCeEEEEEeCCCCc--cccchhccccCCCCCCcEEEEeecc-hhhhh
Q 047930 229 KLGLTL---HE--ETESGRARSLCNRLK----KEKRILVILDNIWEN--LDFQAVGIPHGDGHKGSKVLLTARS-LDVLS 296 (395)
Q Consensus 229 ~l~~~~---~~--~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR~-~~va~ 296 (395)
.-..+. +. ....+.+..+.+.+. .+++-++|||++... ...+.+...+-....+.++|++|.+ ..+..
T Consensus 85 g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~ 164 (647)
T PRK07994 85 GRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPV 164 (647)
T ss_pred CCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccch
Confidence 000000 00 011122233333322 256679999999754 3455555555333445555555444 44543
Q ss_pred hcCCCcceeecCCCChHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHHHHHH
Q 047930 297 RKMDSQQNFSFDVLKEDEAWSLFKKMAGDYIEGSEFKWVAREVAKECAGLPVSIVTV 353 (395)
Q Consensus 297 ~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~i 353 (395)
.....+..|++.+|+.++....+.+.+.......+ ......|++.++|.|--+..+
T Consensus 165 TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~~e-~~aL~~Ia~~s~Gs~R~Al~l 220 (647)
T PRK07994 165 TILSRCLQFHLKALDVEQIRQQLEHILQAEQIPFE-PRALQLLARAADGSMRDALSL 220 (647)
T ss_pred HHHhhheEeeCCCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCCHHHHHHH
Confidence 34455779999999999999999987743222222 235678999999988744443
No 33
>PRK04195 replication factor C large subunit; Provisional
Probab=98.85 E-value=9e-08 Score=94.35 Aligned_cols=186 Identities=17% Similarity=0.168 Sum_probs=113.4
Q ss_pred ccccccchhchHHHHHHHHHHhcC----CCceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHH
Q 047930 149 SNKDYEAFESRMSTLNDILDALKN----PDVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQG 224 (395)
Q Consensus 149 ~~~~~~~~~gr~~~~~~l~~~l~~----~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 224 (395)
.|.....++|++..++.+..|+.. ...+.+.|+|++|+||||+|+.+++... |+ .+.++.+...+.. ...
T Consensus 9 rP~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~----~~-~ielnasd~r~~~-~i~ 82 (482)
T PRK04195 9 RPKTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG----WE-VIELNASDQRTAD-VIE 82 (482)
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC----CC-EEEEcccccccHH-HHH
Confidence 345567789999999999888762 2267899999999999999999998764 32 3444555433322 223
Q ss_pred HHHHHhCCCccccchhhhHHHHHHHHhcCCeEEEEEeCCCCccc------cchhccccCCCCCCcEEEEeecchh-hhh-
Q 047930 225 EFADKLGLTLHEETESGRARSLCNRLKKEKRILVILDNIWENLD------FQAVGIPHGDGHKGSKVLLTARSLD-VLS- 296 (395)
Q Consensus 225 ~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~------~~~l~~~l~~~~~gs~iivTtR~~~-va~- 296 (395)
.++....... .+...++-+||||+++.... +..+...+. ..+..||+|+.+.. ...
T Consensus 83 ~~i~~~~~~~--------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~--~~~~~iIli~n~~~~~~~k 146 (482)
T PRK04195 83 RVAGEAATSG--------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIK--KAKQPIILTANDPYDPSLR 146 (482)
T ss_pred HHHHHhhccC--------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHH--cCCCCEEEeccCccccchh
Confidence 3332221110 00112578999999976432 333333332 22344666665422 211
Q ss_pred hcCCCcceeecCCCChHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHHHHHHHHHh
Q 047930 297 RKMDSQQNFSFDVLKEDEAWSLFKKMAGDYIEGSEFKWVAREVAKECAGLPVSIVTVARAL 357 (395)
Q Consensus 297 ~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~i~~~l 357 (395)
........+++.+++.++....+.+.+......-+ .+....|++.|+|..-.+......+
T Consensus 147 ~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi~i~-~eaL~~Ia~~s~GDlR~ain~Lq~~ 206 (482)
T PRK04195 147 ELRNACLMIEFKRLSTRSIVPVLKRICRKEGIECD-DEALKEIAERSGGDLRSAINDLQAI 206 (482)
T ss_pred hHhccceEEEecCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 12234568999999999999999887743222222 3467889999998776654433333
No 34
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.85 E-value=1.4e-07 Score=91.92 Aligned_cols=202 Identities=18% Similarity=0.180 Sum_probs=117.1
Q ss_pred cccccchhchHHHHHHHHHHhcCCCc-eEEEEEecCCCcHHHHHHHHHHHhcccCC--C-----------------CEEE
Q 047930 150 NKDYEAFESRMSTLNDILDALKNPDV-NMLGIYGMGGIGKTTLAKEVARKAENEKL--F-----------------DQVI 209 (395)
Q Consensus 150 ~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~--f-----------------~~~~ 209 (395)
|.....++|.+.....|...+..+.. ..+.++|++|+||||+|+.+.+....... + ..+.
T Consensus 10 P~~~~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~ 89 (472)
T PRK14962 10 PKTFSEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVI 89 (472)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccE
Confidence 44566788988887778777776665 45789999999999999999887542111 0 0122
Q ss_pred EEEeCCcCCHHHHHHHHHHHhCCCccccchhhhHHHHHHHHhcCCeEEEEEeCCCCc--cccchhccccCCCCCCcEEEE
Q 047930 210 FVEVSQIQDIRKIQGEFADKLGLTLHEETESGRARSLCNRLKKEKRILVILDNIWEN--LDFQAVGIPHGDGHKGSKVLL 287 (395)
Q Consensus 210 wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iiv 287 (395)
.++.+......++ +++.+..... . ..+++-++|+|++... ...+.+...+........+|+
T Consensus 90 el~aa~~~gid~i-R~i~~~~~~~---------------p-~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Il 152 (472)
T PRK14962 90 ELDAASNRGIDEI-RKIRDAVGYR---------------P-MEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVL 152 (472)
T ss_pred EEeCcccCCHHHH-HHHHHHHhhC---------------h-hcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEE
Confidence 2222222222211 1222111100 0 1145679999999654 234444444433333444444
Q ss_pred eecc-hhhhhhcCCCcceeecCCCChHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCc-hHHHHHHHHHhh--C-C-C
Q 047930 288 TARS-LDVLSRKMDSQQNFSFDVLKEDEAWSLFKKMAGDYIEGSEFKWVAREVAKECAGL-PVSIVTVARALR--N-K-R 361 (395)
Q Consensus 288 TtR~-~~va~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~Gl-Plai~~i~~~l~--~-~-~ 361 (395)
+|.+ ..+..........+++.+++.++....+.+.+......- -.+....|++.++|. +.++..+-.+.. . + +
T Consensus 153 attn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~i-~~eal~~Ia~~s~GdlR~aln~Le~l~~~~~~~It 231 (472)
T PRK14962 153 ATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIEI-DREALSFIAKRASGGLRDALTMLEQVWKFSEGKIT 231 (472)
T ss_pred EeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCC
Confidence 4443 344333445667899999999999999988774322111 133577888877654 677777765443 1 2 5
Q ss_pred HHHHHHHH
Q 047930 362 LFEWKDAL 369 (395)
Q Consensus 362 ~~~w~~~l 369 (395)
.+....++
T Consensus 232 ~e~V~~~l 239 (472)
T PRK14962 232 LETVHEAL 239 (472)
T ss_pred HHHHHHHH
Confidence 55555544
No 35
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.84 E-value=1e-07 Score=95.08 Aligned_cols=199 Identities=11% Similarity=0.129 Sum_probs=114.9
Q ss_pred cccccchhchHHHHHHHHHHhcCCCc-eEEEEEecCCCcHHHHHHHHHHHhcccCCC--CEEEEEEeCCcCCHHHHHHHH
Q 047930 150 NKDYEAFESRMSTLNDILDALKNPDV-NMLGIYGMGGIGKTTLAKEVARKAENEKLF--DQVIFVEVSQIQDIRKIQGEF 226 (395)
Q Consensus 150 ~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f--~~~~wv~~s~~~~~~~~~~~i 226 (395)
|....+++|.+..+..|.+++..++. ..+.++|+.|+||||+|+.+.+........ ..... ..+......+.|
T Consensus 12 P~~f~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~----~pCg~C~~C~~i 87 (618)
T PRK14951 12 PRSFSEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITA----TPCGVCQACRDI 87 (618)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCC----CCCCccHHHHHH
Confidence 35567788988888889888887665 456899999999999999997764321110 00000 011111111222
Q ss_pred HHHhCCC---ccc--cchhhhHHHHHHHHh----cCCeEEEEEeCCCCc--cccchhccccCCCCCCcEEEEee-cchhh
Q 047930 227 ADKLGLT---LHE--ETESGRARSLCNRLK----KEKRILVILDNIWEN--LDFQAVGIPHGDGHKGSKVLLTA-RSLDV 294 (395)
Q Consensus 227 ~~~l~~~---~~~--~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTt-R~~~v 294 (395)
...-... .+. ....+.+..+.+.+. .++.-++|||+++.. ..++.+...+......+++|++| ....+
T Consensus 88 ~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~ki 167 (618)
T PRK14951 88 DSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKV 167 (618)
T ss_pred HcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhh
Confidence 1100000 000 001112223333322 244558999999765 34555655554444556666555 43444
Q ss_pred hhhcCCCcceeecCCCChHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHHHHHH
Q 047930 295 LSRKMDSQQNFSFDVLKEDEAWSLFKKMAGDYIEGSEFKWVAREVAKECAGLPVSIVTV 353 (395)
Q Consensus 295 a~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~i 353 (395)
.......+..+++.+++.++....+.+.+......-+ .+....|++.++|.+--+..+
T Consensus 168 l~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~ie-~~AL~~La~~s~GslR~al~l 225 (618)
T PRK14951 168 PVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPAE-PQALRLLARAARGSMRDALSL 225 (618)
T ss_pred hHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCCHHHHHHH
Confidence 4334456679999999999999999887743322222 235788899999987655444
No 36
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.84 E-value=1.3e-07 Score=93.12 Aligned_cols=186 Identities=14% Similarity=0.182 Sum_probs=111.3
Q ss_pred cccccchhchHHHHHHHHHHhcCCCc-eEEEEEecCCCcHHHHHHHHHHHhcccC-------------------CCCEEE
Q 047930 150 NKDYEAFESRMSTLNDILDALKNPDV-NMLGIYGMGGIGKTTLAKEVARKAENEK-------------------LFDQVI 209 (395)
Q Consensus 150 ~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~-------------------~f~~~~ 209 (395)
|.....++|.+..+..|...+..++. ..+.++|+.|+||||+|+.+++...... .|...+
T Consensus 12 P~~f~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dli 91 (546)
T PRK14957 12 PQSFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLI 91 (546)
T ss_pred cCcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceE
Confidence 34556788999999889888876554 4577999999999999999998643211 111222
Q ss_pred EEEeCCcCCHHHHHHHHHHHhCCCccccchhhhHHHHHHHHhcCCeEEEEEeCCCCc--cccchhccccCCCCCCcEEEE
Q 047930 210 FVEVSQIQDIRKIQGEFADKLGLTLHEETESGRARSLCNRLKKEKRILVILDNIWEN--LDFQAVGIPHGDGHKGSKVLL 287 (395)
Q Consensus 210 wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iiv 287 (395)
++.........+ .+++++.+ ...-..+++-++|+|++... ..++.+...+......+.+|+
T Consensus 92 eidaas~~gvd~-ir~ii~~~----------------~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL 154 (546)
T PRK14957 92 EIDAASRTGVEE-TKEILDNI----------------QYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFIL 154 (546)
T ss_pred EeecccccCHHH-HHHHHHHH----------------HhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEE
Confidence 222211111111 11111111 11101256679999999654 345555555544444565665
Q ss_pred ee-cchhhhhhcCCCcceeecCCCChHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchH-HHHHH
Q 047930 288 TA-RSLDVLSRKMDSQQNFSFDVLKEDEAWSLFKKMAGDYIEGSEFKWVAREVAKECAGLPV-SIVTV 353 (395)
Q Consensus 288 Tt-R~~~va~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPl-ai~~i 353 (395)
+| ....+.......+..+++.+++.++....+.+.+.......+ ......|++.++|.+- |+..+
T Consensus 155 ~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi~~e-~~Al~~Ia~~s~GdlR~alnlL 221 (546)
T PRK14957 155 ATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENINSD-EQSLEYIAYHAKGSLRDALSLL 221 (546)
T ss_pred EECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCCHHHHHHHH
Confidence 44 434443333455679999999999998888886643222222 2356789999999765 44443
No 37
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.84 E-value=6e-08 Score=93.17 Aligned_cols=196 Identities=15% Similarity=0.144 Sum_probs=116.7
Q ss_pred cccccchhchHHHHHHHHHHhcCCCce-EEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHHH
Q 047930 150 NKDYEAFESRMSTLNDILDALKNPDVN-MLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFAD 228 (395)
Q Consensus 150 ~~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 228 (395)
|.....++|.+..+..|..++..++.. .+.++|+.|+||||+|+.+++.......... ..+....+ ...+..
T Consensus 14 P~~f~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~---~pCg~C~s----C~~i~~ 86 (484)
T PRK14956 14 PQFFRDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGN---EPCNECTS----CLEITK 86 (484)
T ss_pred CCCHHHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCc---cccCCCcH----HHHHHc
Confidence 455677899988888888888877654 5789999999999999999987543211100 00111111 111111
Q ss_pred HhCCCc---c--ccchhhhHHHHHHHHh----cCCeEEEEEeCCCCc--cccchhccccCCCCCCcEEEE-eecchhhhh
Q 047930 229 KLGLTL---H--EETESGRARSLCNRLK----KEKRILVILDNIWEN--LDFQAVGIPHGDGHKGSKVLL-TARSLDVLS 296 (395)
Q Consensus 229 ~l~~~~---~--~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iiv-TtR~~~va~ 296 (395)
...... + .....+.+..+.+.+. .++.-++|||++... ..++.+...+-.......+|+ ||....+..
T Consensus 87 g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~ 166 (484)
T PRK14956 87 GISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPE 166 (484)
T ss_pred cCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccH
Confidence 111000 0 0011122333333332 255669999999755 356666555533334555554 444455544
Q ss_pred hcCCCcceeecCCCChHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHHHHHH
Q 047930 297 RKMDSQQNFSFDVLKEDEAWSLFKKMAGDYIEGSEFKWVAREVAKECAGLPVSIVTV 353 (395)
Q Consensus 297 ~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~i 353 (395)
.....+..|.+.+++.++..+.+.+.+......-+ .+....|++.++|.+--...+
T Consensus 167 TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi~~e-~eAL~~Ia~~S~Gd~RdAL~l 222 (484)
T PRK14956 167 TILSRCQDFIFKKVPLSVLQDYSEKLCKIENVQYD-QEGLFWIAKKGDGSVRDMLSF 222 (484)
T ss_pred HHHhhhheeeecCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCChHHHHHHH
Confidence 44556678999999999999999888753322222 346788999999998544333
No 38
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.83 E-value=8.5e-08 Score=94.33 Aligned_cols=186 Identities=13% Similarity=0.153 Sum_probs=114.1
Q ss_pred cccccchhchHHHHHHHHHHhcCCCceE-EEEEecCCCcHHHHHHHHHHHhcccCCC-------------------CEEE
Q 047930 150 NKDYEAFESRMSTLNDILDALKNPDVNM-LGIYGMGGIGKTTLAKEVARKAENEKLF-------------------DQVI 209 (395)
Q Consensus 150 ~~~~~~~~gr~~~~~~l~~~l~~~~~~v-i~I~G~~GiGKTtLa~~v~~~~~~~~~f-------------------~~~~ 209 (395)
|....+++|.+..+..|.+++..++.+. +.++|+.|+||||+|+.+.+.......+ ..++
T Consensus 12 P~~f~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~ 91 (509)
T PRK14958 12 PRCFQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLF 91 (509)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEE
Confidence 4556778999999999999998766544 6899999999999999998865432111 1123
Q ss_pred EEEeCCcCCHHHHHHHHHHHhCCCccccchhhhHHHHHHHHhcCCeEEEEEeCCCCc--cccchhccccCCCCCCcEEEE
Q 047930 210 FVEVSQIQDIRKIQGEFADKLGLTLHEETESGRARSLCNRLKKEKRILVILDNIWEN--LDFQAVGIPHGDGHKGSKVLL 287 (395)
Q Consensus 210 wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iiv 287 (395)
.+..+....++++ +++++.+.... ..++.-++|||++... ...+.+...+.....++++|+
T Consensus 92 eidaas~~~v~~i-R~l~~~~~~~p----------------~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIl 154 (509)
T PRK14958 92 EVDAASRTKVEDT-RELLDNIPYAP----------------TKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFIL 154 (509)
T ss_pred EEcccccCCHHHH-HHHHHHHhhcc----------------ccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEE
Confidence 3332222222221 22222221100 1245668999999764 345555555544445666666
Q ss_pred eecc-hhhhhhcCCCcceeecCCCChHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHHHHHH
Q 047930 288 TARS-LDVLSRKMDSQQNFSFDVLKEDEAWSLFKKMAGDYIEGSEFKWVAREVAKECAGLPVSIVTV 353 (395)
Q Consensus 288 TtR~-~~va~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~i 353 (395)
+|.+ ..+..........+++.+++.++....+.+.+......-+ ......|++.++|.|.-+..+
T Consensus 155 attd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~~-~~al~~ia~~s~GslR~al~l 220 (509)
T PRK14958 155 ATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEFE-NAALDLLARAANGSVRDALSL 220 (509)
T ss_pred EECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCcHHHHHHH
Confidence 5543 3443333445678999999999988887777643222222 234678899999988655443
No 39
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.82 E-value=2.5e-07 Score=86.77 Aligned_cols=199 Identities=14% Similarity=0.080 Sum_probs=116.5
Q ss_pred cccccchhchHHHHHHHHHHhcCCCc-eEEEEEecCCCcHHHHHHHHHHHhcccCC--CCEEEEEEeCCcCCHHHHHHHH
Q 047930 150 NKDYEAFESRMSTLNDILDALKNPDV-NMLGIYGMGGIGKTTLAKEVARKAENEKL--FDQVIFVEVSQIQDIRKIQGEF 226 (395)
Q Consensus 150 ~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~--f~~~~wv~~s~~~~~~~~~~~i 226 (395)
|.....++|.+.....+...+..++. ..+.|+|+.|+||||+|..+....-.... +... ....+.......+.+
T Consensus 19 P~~~~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~---~~~~~~~~c~~c~~i 95 (351)
T PRK09112 19 PSENTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPE---TLADPDPASPVWRQI 95 (351)
T ss_pred CCchhhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcc---ccCCCCCCCHHHHHH
Confidence 45566788999999999998886664 45889999999999999999887543110 1111 001111111223333
Q ss_pred HHHhC-------CCcccc-------chhhhHHHHHHHHh----cCCeEEEEEeCCCCcc--ccchhccccCCCCCCcEE-
Q 047930 227 ADKLG-------LTLHEE-------TESGRARSLCNRLK----KEKRILVILDNIWENL--DFQAVGIPHGDGHKGSKV- 285 (395)
Q Consensus 227 ~~~l~-------~~~~~~-------~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~i- 285 (395)
...-. .+.+.. -..+.+..+.+.+. .+++-++|+|+++... ..+.+...+.....+..+
T Consensus 96 ~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fi 175 (351)
T PRK09112 96 AQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALFI 175 (351)
T ss_pred HcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEE
Confidence 22211 000000 01123344555543 3567799999997553 344444444322234444
Q ss_pred EEeecchhhhhhcCCCcceeecCCCChHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHHHHHHH
Q 047930 286 LLTARSLDVLSRKMDSQQNFSFDVLKEDEAWSLFKKMAGDYIEGSEFKWVAREVAKECAGLPVSIVTVA 354 (395)
Q Consensus 286 ivTtR~~~va~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~i~ 354 (395)
++|++...+.....+....+++.+++.++...++.+...... --.+....+++.++|.|.....+.
T Consensus 176 Lit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~---~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 176 LISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG---SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred EEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccC---CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 444444444333345567999999999999999988532211 113356789999999998665443
No 40
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.78 E-value=2.7e-07 Score=93.15 Aligned_cols=219 Identities=20% Similarity=0.189 Sum_probs=125.2
Q ss_pred cchhchHHHHHHHHHHhc----CCC-ceEEEEEecCCCcHHHHHHHHHHHhcc---cCCC--CEEEEEEeCCcCCHHHHH
Q 047930 154 EAFESRMSTLNDILDALK----NPD-VNMLGIYGMGGIGKTTLAKEVARKAEN---EKLF--DQVIFVEVSQIQDIRKIQ 223 (395)
Q Consensus 154 ~~~~gr~~~~~~l~~~l~----~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~---~~~f--~~~~wv~~s~~~~~~~~~ 223 (395)
..+.+|++++++|...|. ... ..++.|+|++|+|||++++.+.+.... +... -.+++|++....+...++
T Consensus 755 D~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIY 834 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAY 834 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHH
Confidence 346799999999887775 223 356789999999999999999876532 1112 236788887777888899
Q ss_pred HHHHHHhCCCccc--cchhhhHHHHHHHHhc--CCeEEEEEeCCCCccc-cch-hccccC-CCCCCcEEEE--eecchhh
Q 047930 224 GEFADKLGLTLHE--ETESGRARSLCNRLKK--EKRILVILDNIWENLD-FQA-VGIPHG-DGHKGSKVLL--TARSLDV 294 (395)
Q Consensus 224 ~~i~~~l~~~~~~--~~~~~~~~~l~~~l~~--~kr~LlVlDdv~~~~~-~~~-l~~~l~-~~~~gs~iiv--TtR~~~v 294 (395)
..|..++....+. .+....+..+...+.. ....+||||+++.... -+. |...+. ....+++|++ ++.....
T Consensus 835 qvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNdlDL 914 (1164)
T PTZ00112 835 QVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNTMDL 914 (1164)
T ss_pred HHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCchhc
Confidence 9999888433222 1223345555555521 2345899999975421 111 211111 1223555544 3332221
Q ss_pred h----hhcCC--CcceeecCCCChHHHHHHHHHhhCCC--CCCC-chHHHHHHHHHHcCCchHHHHHHHHHhhC----C-
Q 047930 295 L----SRKMD--SQQNFSFDVLKEDEAWSLFKKMAGDY--IEGS-EFKWVAREVAKECAGLPVSIVTVARALRN----K- 360 (395)
Q Consensus 295 a----~~~~~--~~~~~~l~~L~~~e~~~lf~~~~~~~--~~~~-~~~~~~~~i~~~c~GlPlai~~i~~~l~~----~- 360 (395)
. ..... ....+.+.|++.++..+++..++... ..++ .++-+++.++...|-.=.||.++-..... +
T Consensus 915 perLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAgEikegskV 994 (1164)
T PTZ00112 915 PERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAFENKRGQKI 994 (1164)
T ss_pred chhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHhhcCCCcc
Confidence 1 11111 12347789999999999999988532 1222 22333333333334445566555444431 2
Q ss_pred CHHHHHHHHHHh
Q 047930 361 RLFEWKDALEQL 372 (395)
Q Consensus 361 ~~~~w~~~l~~l 372 (395)
+.+.-..+.+.+
T Consensus 995 T~eHVrkAleei 1006 (1164)
T PTZ00112 995 VPRDITEATNQL 1006 (1164)
T ss_pred CHHHHHHHHHHH
Confidence 455666666554
No 41
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.78 E-value=1.9e-07 Score=94.23 Aligned_cols=204 Identities=18% Similarity=0.163 Sum_probs=118.4
Q ss_pred ccccchhchHHHHHHHHHHhcCCCceEEEEEecCCCcHHHHHHHHHHHhcccCCC---CEEEEEEeCCc---CCHHHHHH
Q 047930 151 KDYEAFESRMSTLNDILDALKNPDVNMLGIYGMGGIGKTTLAKEVARKAENEKLF---DQVIFVEVSQI---QDIRKIQG 224 (395)
Q Consensus 151 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f---~~~~wv~~s~~---~~~~~~~~ 224 (395)
...+.++|+...+..+...+..+....+.|+|++|+||||||+.+++.......+ ...-|+.+... .+...+..
T Consensus 151 ~~~~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~ 230 (615)
T TIGR02903 151 RAFSEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREVTN 230 (615)
T ss_pred CcHHhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHHhH
Confidence 3445678988888888887776667789999999999999999998876433222 11234444321 12222211
Q ss_pred HH---------------HHHhCCCc----------------cc--cchhhhHHHHHHHHhcCCeEEEEEeCCCCc--ccc
Q 047930 225 EF---------------ADKLGLTL----------------HE--ETESGRARSLCNRLKKEKRILVILDNIWEN--LDF 269 (395)
Q Consensus 225 ~i---------------~~~l~~~~----------------~~--~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~--~~~ 269 (395)
.+ +...+... ++ .-+......+.+.+. .++++++-|+.|.. ..|
T Consensus 231 ~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le-~~~v~~~~~~~~~~~~~~~ 309 (615)
T TIGR02903 231 PLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLE-DKRVEFSSSYYDPDDPNVP 309 (615)
T ss_pred HhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHh-hCeEEeecceeccCCcccc
Confidence 11 11111100 00 001123445666665 56777777666543 357
Q ss_pred chhccccCCCCCCcEEEE--eecchhh-hhhcCCCcceeecCCCChHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCc
Q 047930 270 QAVGIPHGDGHKGSKVLL--TARSLDV-LSRKMDSQQNFSFDVLKEDEAWSLFKKMAGDYIEGSEFKWVAREVAKECAGL 346 (395)
Q Consensus 270 ~~l~~~l~~~~~gs~iiv--TtR~~~v-a~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~Gl 346 (395)
..+...+....+...+++ ||++... ..........+.+.+++.++.+.++++.+...... --.++.+.|.+.+..-
T Consensus 310 ~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v~-ls~eal~~L~~ys~~g 388 (615)
T TIGR02903 310 KYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINVH-LAAGVEELIARYTIEG 388 (615)
T ss_pred hhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHCCCcH
Confidence 767666555555544555 5564332 12122334578899999999999999987532211 1134556677766656
Q ss_pred hHHHHHHHHH
Q 047930 347 PVSIVTVARA 356 (395)
Q Consensus 347 Plai~~i~~~ 356 (395)
+-++..++..
T Consensus 389 Rraln~L~~~ 398 (615)
T TIGR02903 389 RKAVNILADV 398 (615)
T ss_pred HHHHHHHHHH
Confidence 7777777544
No 42
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.78 E-value=8.2e-08 Score=78.42 Aligned_cols=121 Identities=21% Similarity=0.225 Sum_probs=71.6
Q ss_pred chHHHHHHHHHHhcCCCceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCcccc
Q 047930 158 SRMSTLNDILDALKNPDVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFADKLGLTLHEE 237 (395)
Q Consensus 158 gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~ 237 (395)
|++..+..+...+..+..+.+.|+|++|+|||++++.+++..... -..++++..+...........+...
T Consensus 2 ~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~-------- 71 (151)
T cd00009 2 GQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFRP--GAPFLYLNASDLLEGLVVAELFGHF-------- 71 (151)
T ss_pred chHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhhcC--CCCeEEEehhhhhhhhHHHHHhhhh--------
Confidence 677788888888877667789999999999999999999986422 2335666665443322211111100
Q ss_pred chhhhHHHHHHHHhcCCeEEEEEeCCCCc-----cccchhccccCC---CCCCcEEEEeecch
Q 047930 238 TESGRARSLCNRLKKEKRILVILDNIWEN-----LDFQAVGIPHGD---GHKGSKVLLTARSL 292 (395)
Q Consensus 238 ~~~~~~~~l~~~l~~~kr~LlVlDdv~~~-----~~~~~l~~~l~~---~~~gs~iivTtR~~ 292 (395)
............++.+|++||++.. ..+..+...+.. ...+..+|+||...
T Consensus 72 ----~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~ 130 (151)
T cd00009 72 ----LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRP 130 (151)
T ss_pred ----hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCcc
Confidence 0001111111246789999999854 122222222211 13577888888864
No 43
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.77 E-value=3.7e-07 Score=86.88 Aligned_cols=170 Identities=14% Similarity=0.101 Sum_probs=104.0
Q ss_pred cchhchHHHHHHHHHHhcCCC----------ceEEEEEecCCCcHHHHHHHHHHHhcccC-------------------C
Q 047930 154 EAFESRMSTLNDILDALKNPD----------VNMLGIYGMGGIGKTTLAKEVARKAENEK-------------------L 204 (395)
Q Consensus 154 ~~~~gr~~~~~~l~~~l~~~~----------~~vi~I~G~~GiGKTtLa~~v~~~~~~~~-------------------~ 204 (395)
..++|.+..++.|..++..+. .+.+.++|+.|+|||++|..+........ |
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~h 84 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTH 84 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 457788888888888887543 45688999999999999999987643221 1
Q ss_pred CCEEEEEEeC-CcCCHHHHHHHHHHHhCCCccccchhhhHHHHHHHHh----cCCeEEEEEeCCCCcc--ccchhccccC
Q 047930 205 FDQVIFVEVS-QIQDIRKIQGEFADKLGLTLHEETESGRARSLCNRLK----KEKRILVILDNIWENL--DFQAVGIPHG 277 (395)
Q Consensus 205 f~~~~wv~~s-~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~~--~~~~l~~~l~ 277 (395)
.|. .++... ....+. .+..+.+.+. .+++-++|||+++... ..+.+...+.
T Consensus 85 pD~-~~i~~~~~~i~i~---------------------~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LE 142 (394)
T PRK07940 85 PDV-RVVAPEGLSIGVD---------------------EVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVE 142 (394)
T ss_pred CCE-EEeccccccCCHH---------------------HHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhh
Confidence 111 111111 011111 1223333322 2455688899997552 3344444443
Q ss_pred CCCCCcEEEEeecc-hhhhhhcCCCcceeecCCCChHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHHHH
Q 047930 278 DGHKGSKVLLTARS-LDVLSRKMDSQQNFSFDVLKEDEAWSLFKKMAGDYIEGSEFKWVAREVAKECAGLPVSIV 351 (395)
Q Consensus 278 ~~~~gs~iivTtR~-~~va~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~ 351 (395)
....++.+|++|.+ ..+..........+.+.+++.++....+.+..+ .+ .+.+..++..++|.|....
T Consensus 143 ep~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~---~~---~~~a~~la~~s~G~~~~A~ 211 (394)
T PRK07940 143 EPPPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDG---VD---PETARRAARASQGHIGRAR 211 (394)
T ss_pred cCCCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcC---CC---HHHHHHHHHHcCCCHHHHH
Confidence 33445556666655 444444445667999999999999988875432 11 2346788999999997543
No 44
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.77 E-value=1.9e-07 Score=93.17 Aligned_cols=183 Identities=14% Similarity=0.188 Sum_probs=112.8
Q ss_pred cccccchhchHHHHHHHHHHhcCCCc-eEEEEEecCCCcHHHHHHHHHHHhcccCC-------------------CCEEE
Q 047930 150 NKDYEAFESRMSTLNDILDALKNPDV-NMLGIYGMGGIGKTTLAKEVARKAENEKL-------------------FDQVI 209 (395)
Q Consensus 150 ~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~-------------------f~~~~ 209 (395)
|.....++|.+..+..|..++..++. ..+.++|+.|+||||+|+.+.+....... |..++
T Consensus 12 P~tFddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~Dvl 91 (709)
T PRK08691 12 PKTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDLL 91 (709)
T ss_pred CCCHHHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccceE
Confidence 45567889999999999998887664 46789999999999999999876432211 10112
Q ss_pred EEEeCCcCCHHHHHHHHHHHhCCCccccchhhhHHHHHHHHh----cCCeEEEEEeCCCCcc--ccchhccccCCCCCCc
Q 047930 210 FVEVSQIQDIRKIQGEFADKLGLTLHEETESGRARSLCNRLK----KEKRILVILDNIWENL--DFQAVGIPHGDGHKGS 283 (395)
Q Consensus 210 wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~~--~~~~l~~~l~~~~~gs 283 (395)
.+..+....+ +.+..+.+... .+++-++|||++.... ....+...+......+
T Consensus 92 EidaAs~~gV---------------------d~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v 150 (709)
T PRK08691 92 EIDAASNTGI---------------------DNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHV 150 (709)
T ss_pred EEeccccCCH---------------------HHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCc
Confidence 2222111111 11222222211 1456799999997543 2344444443333456
Q ss_pred EEEEeecc-hhhhhhcCCCcceeecCCCChHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHHHHHHH
Q 047930 284 KVLLTARS-LDVLSRKMDSQQNFSFDVLKEDEAWSLFKKMAGDYIEGSEFKWVAREVAKECAGLPVSIVTVA 354 (395)
Q Consensus 284 ~iivTtR~-~~va~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~i~ 354 (395)
++|++|.+ ..+.....+.+..+++.+++.++....+.+.+......-+ ......|++.++|.+.-+..+-
T Consensus 151 ~fILaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~id-~eAL~~Ia~~A~GslRdAlnLL 221 (709)
T PRK08691 151 KFILATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAYE-PPALQLLGRAAAGSMRDALSLL 221 (709)
T ss_pred EEEEEeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCCcC-HHHHHHHHHHhCCCHHHHHHHH
Confidence 67666654 3333222344567899999999999999988753322221 2357889999999986554443
No 45
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.77 E-value=3.5e-07 Score=88.85 Aligned_cols=185 Identities=12% Similarity=0.113 Sum_probs=114.5
Q ss_pred cccccchhchHHHHHHHHHHhcCCCce-EEEEEecCCCcHHHHHHHHHHHhcccC-------------------CCCEEE
Q 047930 150 NKDYEAFESRMSTLNDILDALKNPDVN-MLGIYGMGGIGKTTLAKEVARKAENEK-------------------LFDQVI 209 (395)
Q Consensus 150 ~~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~~~-------------------~f~~~~ 209 (395)
|....+++|.+...+.|.+.+..++.. .+.++|+.|+||||+|+.+........ .+..++
T Consensus 9 P~~f~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~ 88 (491)
T PRK14964 9 PSSFKDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVI 88 (491)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEE
Confidence 355677889988888888888766654 788999999999999999987432110 111133
Q ss_pred EEEeCCcCCHHHHHHHHHHHhCCCccccchhhhHHHHHHHHhcCCeEEEEEeCCCCcc--ccchhccccCCCCCCcEEEE
Q 047930 210 FVEVSQIQDIRKIQGEFADKLGLTLHEETESGRARSLCNRLKKEKRILVILDNIWENL--DFQAVGIPHGDGHKGSKVLL 287 (395)
Q Consensus 210 wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iiv 287 (395)
.++.+......+ .+++.+...... ..++.-++|+|++.... ..+.+...+....+++++|+
T Consensus 89 eidaas~~~vdd-IR~Iie~~~~~P----------------~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIl 151 (491)
T PRK14964 89 EIDAASNTSVDD-IKVILENSCYLP----------------ISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFIL 151 (491)
T ss_pred EEecccCCCHHH-HHHHHHHHHhcc----------------ccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEE
Confidence 444433333322 222222211000 01456689999996543 45555555544445666666
Q ss_pred eec-chhhhhhcCCCcceeecCCCChHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHHHHH
Q 047930 288 TAR-SLDVLSRKMDSQQNFSFDVLKEDEAWSLFKKMAGDYIEGSEFKWVAREVAKECAGLPVSIVT 352 (395)
Q Consensus 288 TtR-~~~va~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~ 352 (395)
+|. ...+..........+++.+++.++....+.+.+......-+ .+....|++.++|.+-.+..
T Consensus 152 atte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i~-~eAL~lIa~~s~GslR~als 216 (491)
T PRK14964 152 ATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIEHD-EESLKLIAENSSGSMRNALF 216 (491)
T ss_pred EeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCCHHHHHH
Confidence 554 34454334456678999999999999999988753322222 23567899999998864433
No 46
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.77 E-value=2.3e-07 Score=91.58 Aligned_cols=197 Identities=14% Similarity=0.135 Sum_probs=110.7
Q ss_pred cccccchhchHHHHHHHHHHhcCCC-ceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHHH
Q 047930 150 NKDYEAFESRMSTLNDILDALKNPD-VNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFAD 228 (395)
Q Consensus 150 ~~~~~~~~gr~~~~~~l~~~l~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 228 (395)
|.....++|++..++.+..++..++ .+.+.++|+.|+||||+|+.+.+...... |.... .+......+.+..
T Consensus 12 P~~F~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~------~~~~~-~Cg~C~sCr~i~~ 84 (605)
T PRK05896 12 PHNFKQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLN------PKDGD-CCNSCSVCESINT 84 (605)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCC------CCCCC-CCcccHHHHHHHc
Confidence 4556678899999999999887654 44688999999999999999988754322 11100 1111111111111
Q ss_pred HhCCCccc-----cchhhhHHHHHHHHh----cCCeEEEEEeCCCCc--cccchhccccCCCCCCcEEEEee-cchhhhh
Q 047930 229 KLGLTLHE-----ETESGRARSLCNRLK----KEKRILVILDNIWEN--LDFQAVGIPHGDGHKGSKVLLTA-RSLDVLS 296 (395)
Q Consensus 229 ~l~~~~~~-----~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTt-R~~~va~ 296 (395)
........ ....+.+..+.+.+. .+++-++|+|++... ..+..+...+.....++.+|++| ....+..
T Consensus 85 ~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~ 164 (605)
T PRK05896 85 NQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPL 164 (605)
T ss_pred CCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhH
Confidence 11000000 001111222222221 123447999999654 34555554443333455555544 4344433
Q ss_pred hcCCCcceeecCCCChHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchH-HHHHHH
Q 047930 297 RKMDSQQNFSFDVLKEDEAWSLFKKMAGDYIEGSEFKWVAREVAKECAGLPV-SIVTVA 354 (395)
Q Consensus 297 ~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPl-ai~~i~ 354 (395)
.....+..+++.++++++....+...+......-+ .+.+..+++.++|.|- |+..+-
T Consensus 165 TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~Is-~eal~~La~lS~GdlR~AlnlLe 222 (605)
T PRK05896 165 TIISRCQRYNFKKLNNSELQELLKSIAKKEKIKIE-DNAIDKIADLADGSLRDGLSILD 222 (605)
T ss_pred HHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCcHHHHHHHHH
Confidence 33445678999999999999999887743221111 2357789999999765 444433
No 47
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.76 E-value=5.8e-07 Score=85.36 Aligned_cols=186 Identities=16% Similarity=0.181 Sum_probs=111.5
Q ss_pred cccccchhchHHHHHHHHHHhcCCCc-eEEEEEecCCCcHHHHHHHHHHHhcccC--------------------CCCEE
Q 047930 150 NKDYEAFESRMSTLNDILDALKNPDV-NMLGIYGMGGIGKTTLAKEVARKAENEK--------------------LFDQV 208 (395)
Q Consensus 150 ~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~--------------------~f~~~ 208 (395)
|.....++|.+..++.+..++..++. ..+.++|+.|+||||+|+.+........ +++.
T Consensus 10 p~~~~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~- 88 (355)
T TIGR02397 10 PQTFEDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV- 88 (355)
T ss_pred CCcHhhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE-
Confidence 34456788999999999998876654 4678999999999999999987753211 2222
Q ss_pred EEEEeCCcCCHHHHHHHHHHHhCCCccccchhhhHHHHHHHHhcCCeEEEEEeCCCCc--cccchhccccCCCCCCcEEE
Q 047930 209 IFVEVSQIQDIRKIQGEFADKLGLTLHEETESGRARSLCNRLKKEKRILVILDNIWEN--LDFQAVGIPHGDGHKGSKVL 286 (395)
Q Consensus 209 ~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ii 286 (395)
+++..+...... -.+++...+.... ..+++-++|+|++... .....+...+......+.+|
T Consensus 89 ~~~~~~~~~~~~-~~~~l~~~~~~~p----------------~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lI 151 (355)
T TIGR02397 89 IEIDAASNNGVD-DIREILDNVKYAP----------------SSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFI 151 (355)
T ss_pred EEeeccccCCHH-HHHHHHHHHhcCc----------------ccCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEE
Confidence 222222111111 1122222211100 0134568999998654 33445544443334466666
Q ss_pred Eeecchh-hhhhcCCCcceeecCCCChHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHHHHHHH
Q 047930 287 LTARSLD-VLSRKMDSQQNFSFDVLKEDEAWSLFKKMAGDYIEGSEFKWVAREVAKECAGLPVSIVTVA 354 (395)
Q Consensus 287 vTtR~~~-va~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~i~ 354 (395)
++|.+.. +..........+++.++++++....+...+......-+ .+.+..+++.++|.|..+....
T Consensus 152 l~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i~-~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 152 LATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKIE-DEALELIARAADGSLRDALSLL 219 (355)
T ss_pred EEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCChHHHHHHH
Confidence 7765533 22222334568899999999999999887743221111 2467889999999987655443
No 48
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.75 E-value=6.4e-07 Score=84.50 Aligned_cols=198 Identities=16% Similarity=0.074 Sum_probs=114.9
Q ss_pred cccccchhchHHHHHHHHHHhcCCCce-EEEEEecCCCcHHHHHHHHHHHhcccCCCCEEE----EEEeCCcCCHHHHHH
Q 047930 150 NKDYEAFESRMSTLNDILDALKNPDVN-MLGIYGMGGIGKTTLAKEVARKAENEKLFDQVI----FVEVSQIQDIRKIQG 224 (395)
Q Consensus 150 ~~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~----wv~~s~~~~~~~~~~ 224 (395)
|.....++|.+.....|.+.+..++.. .+.++|+.|+||+|+|..+....-.+....... -.+... .......+
T Consensus 15 P~~~~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~-~~~c~~c~ 93 (365)
T PRK07471 15 PRETTALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAI-DPDHPVAR 93 (365)
T ss_pred CCchhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccC-CCCChHHH
Confidence 344567889999999999988877654 588999999999999999888754322111000 000000 00001111
Q ss_pred HHHHHhCCC-------cccc-------chhhhHHHHHHHHh----cCCeEEEEEeCCCCc--cccchhccccCCCCCCcE
Q 047930 225 EFADKLGLT-------LHEE-------TESGRARSLCNRLK----KEKRILVILDNIWEN--LDFQAVGIPHGDGHKGSK 284 (395)
Q Consensus 225 ~i~~~l~~~-------~~~~-------~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ 284 (395)
.+...-..+ .++. -..+.+..+.+.+. .+++.++||||++.. ...+.+...+.....++.
T Consensus 94 ~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~~~ 173 (365)
T PRK07471 94 RIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPARSL 173 (365)
T ss_pred HHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCCeE
Confidence 221111000 0000 01122334444442 256779999999654 344555444433344566
Q ss_pred EEEeecch-hhhhhcCCCcceeecCCCChHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHHHHHH
Q 047930 285 VLLTARSL-DVLSRKMDSQQNFSFDVLKEDEAWSLFKKMAGDYIEGSEFKWVAREVAKECAGLPVSIVTV 353 (395)
Q Consensus 285 iivTtR~~-~va~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~i 353 (395)
+|++|.+. .+..........+.+.+++.++..+++...... .++ .....++..++|.|+....+
T Consensus 174 ~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~---~~~--~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 174 FLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPD---LPD--DPRAALAALAEGSVGRALRL 238 (365)
T ss_pred EEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhccc---CCH--HHHHHHHHHcCCCHHHHHHH
Confidence 67766654 443444556779999999999999999886522 111 12267899999999866544
No 49
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.75 E-value=5.1e-07 Score=77.56 Aligned_cols=159 Identities=19% Similarity=0.162 Sum_probs=94.3
Q ss_pred HHHHhcCCCc-eEEEEEecCCCcHHHHHHHHHHHhccc--------------------CCCCEEEEEEeCC-cCCHHHHH
Q 047930 166 ILDALKNPDV-NMLGIYGMGGIGKTTLAKEVARKAENE--------------------KLFDQVIFVEVSQ-IQDIRKIQ 223 (395)
Q Consensus 166 l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~--------------------~~f~~~~wv~~s~-~~~~~~~~ 223 (395)
+.+.+..++. ..+.++|+.|+||||+|+.+....... .+.+. .++.... .... +..
T Consensus 4 l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~-~~~~~~~~~~~~-~~i 81 (188)
T TIGR00678 4 LKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDL-HRLEPEGQSIKV-DQV 81 (188)
T ss_pred HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcE-EEeccccCcCCH-HHH
Confidence 4445555554 678899999999999999998875432 11122 1221111 1111 111
Q ss_pred HHHHHHhCCCccccchhhhHHHHHHHHhcCCeEEEEEeCCCCcc--ccchhccccCCCCCCcEEEEeecch-hhhhhcCC
Q 047930 224 GEFADKLGLTLHEETESGRARSLCNRLKKEKRILVILDNIWENL--DFQAVGIPHGDGHKGSKVLLTARSL-DVLSRKMD 300 (395)
Q Consensus 224 ~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iivTtR~~-~va~~~~~ 300 (395)
+++.+.+.... ..+.+-++|+||+.... ..+.+...+......+.+|++|++. .+......
T Consensus 82 ~~i~~~~~~~~----------------~~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~s 145 (188)
T TIGR00678 82 RELVEFLSRTP----------------QESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRS 145 (188)
T ss_pred HHHHHHHccCc----------------ccCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHh
Confidence 12222221100 01456789999996542 3455555554444466677777653 33222334
Q ss_pred CcceeecCCCChHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHH
Q 047930 301 SQQNFSFDVLKEDEAWSLFKKMAGDYIEGSEFKWVAREVAKECAGLPVS 349 (395)
Q Consensus 301 ~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPla 349 (395)
....+++.+++.++..+.+.+. + . + .+.+..|++.++|.|..
T Consensus 146 r~~~~~~~~~~~~~~~~~l~~~-g--i-~---~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 146 RCQVLPFPPLSEEALLQWLIRQ-G--I-S---EEAAELLLALAGGSPGA 187 (188)
T ss_pred hcEEeeCCCCCHHHHHHHHHHc-C--C-C---HHHHHHHHHHcCCCccc
Confidence 5568999999999999999887 2 2 1 24688999999998853
No 50
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.74 E-value=1.4e-07 Score=98.40 Aligned_cols=202 Identities=16% Similarity=0.193 Sum_probs=118.1
Q ss_pred hhchHHHHHHHHHHhc---CCCceEEEEEecCCCcHHHHHHHHHHHhccc-CCCCEEEEEEeCCcCC---HHHHHHHHHH
Q 047930 156 FESRMSTLNDILDALK---NPDVNMLGIYGMGGIGKTTLAKEVARKAENE-KLFDQVIFVEVSQIQD---IRKIQGEFAD 228 (395)
Q Consensus 156 ~~gr~~~~~~l~~~l~---~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~-~~f~~~~wv~~s~~~~---~~~~~~~i~~ 228 (395)
++||+.+++.|...+. .+...++.+.|.+|+|||+|++.|......+ ..|-.-.+-....+.+ ..+.+++++.
T Consensus 2 l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r~l~~ 81 (849)
T COG3899 2 LYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFDQFERNIPLSPLVQAFRDLMG 81 (849)
T ss_pred CCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhcccccCCCchHHHHHHHHHHHH
Confidence 6799999999988876 4566799999999999999999999886544 2221111111111211 2233333333
Q ss_pred Hh-------------------CCCcc--------------------c---cchhhh-----HHHHHHHHhcCCeEEEEEe
Q 047930 229 KL-------------------GLTLH--------------------E---ETESGR-----ARSLCNRLKKEKRILVILD 261 (395)
Q Consensus 229 ~l-------------------~~~~~--------------------~---~~~~~~-----~~~l~~~l~~~kr~LlVlD 261 (395)
++ +.... + ...... ...+.......++.++|+|
T Consensus 82 ~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi~le 161 (849)
T COG3899 82 QLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVIVLE 161 (849)
T ss_pred HHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEEEEe
Confidence 33 11000 0 000011 1122222334679999999
Q ss_pred CC-CCccc-cc---hhccccC---CCCCCcEEEEeecch-hhhhhcCCCcceeecCCCChHHHHHHHHHhhCCCCCCCch
Q 047930 262 NI-WENLD-FQ---AVGIPHG---DGHKGSKVLLTARSL-DVLSRKMDSQQNFSFDVLKEDEAWSLFKKMAGDYIEGSEF 332 (395)
Q Consensus 262 dv-~~~~~-~~---~l~~~l~---~~~~gs~iivTtR~~-~va~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~ 332 (395)
|+ |-+.. .+ .+..... ...+-.-.+.|.+.. ............|.|.||+..+...+....++..... .
T Consensus 162 DlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~~~--~ 239 (849)
T COG3899 162 DLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTKLL--P 239 (849)
T ss_pred cccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCcccc--c
Confidence 99 64432 11 1111111 000011123333332 1112234556799999999999999999998753322 2
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHhhC
Q 047930 333 KWVAREVAKECAGLPVSIVTVARALRN 359 (395)
Q Consensus 333 ~~~~~~i~~~c~GlPlai~~i~~~l~~ 359 (395)
.+..+.|+++..|+|+.+..+-..|..
T Consensus 240 ~p~~~~i~~kt~GnPfFi~e~lk~l~~ 266 (849)
T COG3899 240 APLLELIFEKTKGNPFFIEEFLKALYE 266 (849)
T ss_pred chHHHHHHHHhcCCCccHHHHHHHHHh
Confidence 346889999999999999999888864
No 51
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.74 E-value=3.5e-07 Score=94.48 Aligned_cols=193 Identities=14% Similarity=0.070 Sum_probs=110.9
Q ss_pred cccccchhchHHHHHHHHHHhcCCCce-EEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHHH
Q 047930 150 NKDYEAFESRMSTLNDILDALKNPDVN-MLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFAD 228 (395)
Q Consensus 150 ~~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 228 (395)
+.....++|.+..++.|..++..++.. .+.++|+.|+||||+|+.+.+.......... ..+......+.|..
T Consensus 11 P~~f~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~-------~pCg~C~sC~~~~~ 83 (824)
T PRK07764 11 PATFAEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTS-------TPCGECDSCVALAP 83 (824)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCC-------CCCcccHHHHHHHc
Confidence 344567889999899999988876654 4789999999999999999887643211100 00000000111110
Q ss_pred HhCC-------CccccchhhhHHHHHHHHh----cCCeEEEEEeCCCCc--cccchhccccCCCCCCcEEEEeecc-hhh
Q 047930 229 KLGL-------TLHEETESGRARSLCNRLK----KEKRILVILDNIWEN--LDFQAVGIPHGDGHKGSKVLLTARS-LDV 294 (395)
Q Consensus 229 ~l~~-------~~~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR~-~~v 294 (395)
.-.. ........+.+..+.+.+. .++.-++|||++... ..++.|...+..-...+.+|++|.+ ..+
T Consensus 84 g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kL 163 (824)
T PRK07764 84 GGPGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKV 163 (824)
T ss_pred CCCCCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhh
Confidence 0000 0000001112222222221 245568899999765 3455565555444456666655543 444
Q ss_pred hhhcCCCcceeecCCCChHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHHH
Q 047930 295 LSRKMDSQQNFSFDVLKEDEAWSLFKKMAGDYIEGSEFKWVAREVAKECAGLPVSI 350 (395)
Q Consensus 295 a~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai 350 (395)
.......+..|++.+++.++...++.+.+.......+ ......|++.++|.+..+
T Consensus 164 l~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~id-~eal~lLa~~sgGdlR~A 218 (824)
T PRK07764 164 IGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVPVE-PGVLPLVIRAGGGSVRDS 218 (824)
T ss_pred hHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCCHHHH
Confidence 4334456779999999999999998887643222211 234677889999988433
No 52
>PTZ00202 tuzin; Provisional
Probab=98.74 E-value=3.9e-07 Score=85.53 Aligned_cols=164 Identities=14% Similarity=0.205 Sum_probs=105.8
Q ss_pred ccccccchhchHHHHHHHHHHhcC---CCceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHH
Q 047930 149 SNKDYEAFESRMSTLNDILDALKN---PDVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGE 225 (395)
Q Consensus 149 ~~~~~~~~~gr~~~~~~l~~~l~~---~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 225 (395)
.|.+...|+||+.++..|...|.+ ...+++.|.|++|+|||||++.+..... + ..++++.. +..++++.
T Consensus 257 lPa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~----~-~qL~vNpr---g~eElLr~ 328 (550)
T PTZ00202 257 APAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG----M-PAVFVDVR---GTEDTLRS 328 (550)
T ss_pred CCCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC----c-eEEEECCC---CHHHHHHH
Confidence 456677899999999999888753 2346899999999999999999996543 1 13333333 67999999
Q ss_pred HHHHhCCCccccchhhhHHHHHHHHh----c-CCeEEEEEeCCCCccc----cchhccccCCCCCCcEEEEeecchhh--
Q 047930 226 FADKLGLTLHEETESGRARSLCNRLK----K-EKRILVILDNIWENLD----FQAVGIPHGDGHKGSKVLLTARSLDV-- 294 (395)
Q Consensus 226 i~~~l~~~~~~~~~~~~~~~l~~~l~----~-~kr~LlVlDdv~~~~~----~~~l~~~l~~~~~gs~iivTtR~~~v-- 294 (395)
++.+|+.+.. ....+....+.+.+. . +++.+||+-= .+-.. +.+. ..+.....-|.|++----+.+
T Consensus 329 LL~ALGV~p~-~~k~dLLrqIqeaLl~~~~e~GrtPVLII~l-reg~~l~rvyne~-v~la~drr~ch~v~evpleslt~ 405 (550)
T PTZ00202 329 VVKALGVPNV-EACGDLLDFISEACRRAKKMNGETPLLVLKL-REGSSLQRVYNEV-VALACDRRLCHVVIEVPLESLTI 405 (550)
T ss_pred HHHHcCCCCc-ccHHHHHHHHHHHHHHHHHhCCCCEEEEEEe-cCCCcHHHHHHHH-HHHHccchhheeeeeehHhhcch
Confidence 9999997432 223345555555553 2 6667777642 22222 2221 233344456667764443322
Q ss_pred hhhcCCCcceeecCCCChHHHHHHHHHhh
Q 047930 295 LSRKMDSQQNFSFDVLKEDEAWSLFKKMA 323 (395)
Q Consensus 295 a~~~~~~~~~~~l~~L~~~e~~~lf~~~~ 323 (395)
+....+.-..|-+++++.++|..+-.+..
T Consensus 406 ~~~~lprldf~~vp~fsr~qaf~y~~h~~ 434 (550)
T PTZ00202 406 ANTLLPRLDFYLVPNFSRSQAFAYTQHAI 434 (550)
T ss_pred hcccCccceeEecCCCCHHHHHHHHhhcc
Confidence 12233455688999999999988876654
No 53
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.73 E-value=3.1e-07 Score=90.95 Aligned_cols=179 Identities=16% Similarity=0.193 Sum_probs=109.5
Q ss_pred cccccchhchHHHHHHHHHHhcCCCce-EEEEEecCCCcHHHHHHHHHHHhcccCC-------------------CCEEE
Q 047930 150 NKDYEAFESRMSTLNDILDALKNPDVN-MLGIYGMGGIGKTTLAKEVARKAENEKL-------------------FDQVI 209 (395)
Q Consensus 150 ~~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~~~~-------------------f~~~~ 209 (395)
|.....++|.+..++.|..++..++.. .+.++|+.|+||||+|+.+......... |...+
T Consensus 12 P~~f~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ 91 (527)
T PRK14969 12 PKSFSELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLI 91 (527)
T ss_pred CCcHHHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCcee
Confidence 345567889999999998888876654 4579999999999999999877532110 11122
Q ss_pred EEEeCCcCCHHHHHHHHHHHhCCCccccchhhhHHHHHHHHh----cCCeEEEEEeCCCCcc--ccchhccccCCCCCCc
Q 047930 210 FVEVSQIQDIRKIQGEFADKLGLTLHEETESGRARSLCNRLK----KEKRILVILDNIWENL--DFQAVGIPHGDGHKGS 283 (395)
Q Consensus 210 wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~~--~~~~l~~~l~~~~~gs 283 (395)
++..+..... +.+..+.+... .+++-++|+|++.... ..+.+...+......+
T Consensus 92 ei~~~~~~~v---------------------d~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~ 150 (527)
T PRK14969 92 EVDAASNTQV---------------------DAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHV 150 (527)
T ss_pred EeeccccCCH---------------------HHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCE
Confidence 2222211111 11222222221 2556799999997553 3455554554434456
Q ss_pred EEEEeecc-hhhhhhcCCCcceeecCCCChHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHHH
Q 047930 284 KVLLTARS-LDVLSRKMDSQQNFSFDVLKEDEAWSLFKKMAGDYIEGSEFKWVAREVAKECAGLPVSI 350 (395)
Q Consensus 284 ~iivTtR~-~~va~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai 350 (395)
.+|++|.+ ..+.......+..+++.+++.++....+.+.+.......+ ......|++.++|.+--+
T Consensus 151 ~fIL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~~~-~~al~~la~~s~Gslr~a 217 (527)
T PRK14969 151 KFILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIPFD-ATALQLLARAAAGSMRDA 217 (527)
T ss_pred EEEEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCCHHHH
Confidence 66665544 3333222334568999999999999988887743222222 235678999999987633
No 54
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.73 E-value=2.7e-07 Score=94.07 Aligned_cols=176 Identities=19% Similarity=0.248 Sum_probs=102.6
Q ss_pred cccccchhchHHHHH---HHHHHhcCCCceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHH
Q 047930 150 NKDYEAFESRMSTLN---DILDALKNPDVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEF 226 (395)
Q Consensus 150 ~~~~~~~~gr~~~~~---~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 226 (395)
|.....|+|.+..+. .+...+...+...+.++|++|+||||||+.+++.... +|. .++.+. ....++ ++
T Consensus 24 P~tldd~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~~~--~f~---~lna~~-~~i~di-r~- 95 (725)
T PRK13341 24 PRTLEEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHTRA--HFS---SLNAVL-AGVKDL-RA- 95 (725)
T ss_pred CCcHHHhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHhcC--cce---eehhhh-hhhHHH-HH-
Confidence 455667889887764 4556666677778899999999999999999987542 231 121110 011110 11
Q ss_pred HHHhCCCccccchhhhHHHHHHHHh-cCCeEEEEEeCCCCc--cccchhccccCCCCCCcEEEEe--ecchh--hhhhcC
Q 047930 227 ADKLGLTLHEETESGRARSLCNRLK-KEKRILVILDNIWEN--LDFQAVGIPHGDGHKGSKVLLT--ARSLD--VLSRKM 299 (395)
Q Consensus 227 ~~~l~~~~~~~~~~~~~~~l~~~l~-~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivT--tR~~~--va~~~~ 299 (395)
.+....+.+. .+++.+|||||++.. ...+.+...+ ..|+.++|+ |.+.. +.....
T Consensus 96 ---------------~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~l---E~g~IiLI~aTTenp~~~l~~aL~ 157 (725)
T PRK13341 96 ---------------EVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWV---ENGTITLIGATTENPYFEVNKALV 157 (725)
T ss_pred ---------------HHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHh---cCceEEEEEecCCChHhhhhhHhh
Confidence 1111111221 145689999999754 3344443322 235555553 33321 212223
Q ss_pred CCcceeecCCCChHHHHHHHHHhhCC------CCCCCchHHHHHHHHHHcCCchHHHH
Q 047930 300 DSQQNFSFDVLKEDEAWSLFKKMAGD------YIEGSEFKWVAREVAKECAGLPVSIV 351 (395)
Q Consensus 300 ~~~~~~~l~~L~~~e~~~lf~~~~~~------~~~~~~~~~~~~~i~~~c~GlPlai~ 351 (395)
.....+.+++|+.++...++.+.+.. .....--.+....|++.+.|..-.+.
T Consensus 158 SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R~ll 215 (725)
T PRK13341 158 SRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDARSLL 215 (725)
T ss_pred ccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHHHHH
Confidence 34568999999999999999887641 11111223467889999998755333
No 55
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.72 E-value=3e-07 Score=88.33 Aligned_cols=202 Identities=14% Similarity=0.162 Sum_probs=114.1
Q ss_pred cccccchhchHHHHHHHHHHhcCCCce-EEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEE-eCCcCCHHHHHHHHH
Q 047930 150 NKDYEAFESRMSTLNDILDALKNPDVN-MLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVE-VSQIQDIRKIQGEFA 227 (395)
Q Consensus 150 ~~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~-~s~~~~~~~~~~~i~ 227 (395)
|.....++|.+...+.|..++..++.+ .+.++|+.|+||||+|..+.+............|.. ...+.......+.+.
T Consensus 12 P~~~~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~~ 91 (397)
T PRK14955 12 PKKFADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDFD 91 (397)
T ss_pred CCcHhhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHHh
Confidence 344567889888888888888876654 488999999999999999988764422111111110 000111111111111
Q ss_pred HHhCCCc-----cccchhhhHHHHHHHHh----cCCeEEEEEeCCCCc--cccchhccccCCCCCCcEEEEeec-chhhh
Q 047930 228 DKLGLTL-----HEETESGRARSLCNRLK----KEKRILVILDNIWEN--LDFQAVGIPHGDGHKGSKVLLTAR-SLDVL 295 (395)
Q Consensus 228 ~~l~~~~-----~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR-~~~va 295 (395)
.....+. ......+.+..+.+.+. .+++-++|+|++... ..++.+...+....+.+.+|++|. ...+.
T Consensus 92 ~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl~ 171 (397)
T PRK14955 92 AGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIP 171 (397)
T ss_pred cCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHhH
Confidence 1100000 00011122333444442 245668999999754 356666555544445666665553 33333
Q ss_pred hhcCCCcceeecCCCChHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHHHHH
Q 047930 296 SRKMDSQQNFSFDVLKEDEAWSLFKKMAGDYIEGSEFKWVAREVAKECAGLPVSIVT 352 (395)
Q Consensus 296 ~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~ 352 (395)
.........+++.++++++....+...+...... --.+.+..|++.++|.+--+..
T Consensus 172 ~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~~-i~~~al~~l~~~s~g~lr~a~~ 227 (397)
T PRK14955 172 ATIASRCQRFNFKRIPLEEIQQQLQGICEAEGIS-VDADALQLIGRKAQGSMRDAQS 227 (397)
T ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHH
Confidence 2222334689999999999998888877422111 1133678899999998764444
No 56
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.71 E-value=4.7e-08 Score=87.07 Aligned_cols=90 Identities=16% Similarity=0.130 Sum_probs=61.9
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCc--CCHHHHHHHH-----HHHhCCCcccc-chh-hhHHH
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQI--QDIRKIQGEF-----ADKLGLTLHEE-TES-GRARS 245 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~--~~~~~~~~~i-----~~~l~~~~~~~-~~~-~~~~~ 245 (395)
-..+.|.|++|+|||||++.++++.... +|+.++|+++.+. +++.++++.+ +..++.+.... ... .....
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~~ 94 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLEK 94 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHHH
Confidence 3468899999999999999999987664 8999999997766 7899999998 33333211000 000 11112
Q ss_pred HHHHHhcCCeEEEEEeCCCC
Q 047930 246 LCNRLKKEKRILVILDNIWE 265 (395)
Q Consensus 246 l~~~l~~~kr~LlVlDdv~~ 265 (395)
.......+++.+|++|++..
T Consensus 95 a~~~~~~G~~vll~iDei~r 114 (249)
T cd01128 95 AKRLVEHGKDVVILLDSITR 114 (249)
T ss_pred HHHHHHCCCCEEEEEECHHH
Confidence 22222358999999999954
No 57
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.69 E-value=9.1e-07 Score=84.19 Aligned_cols=175 Identities=18% Similarity=0.246 Sum_probs=102.0
Q ss_pred ccccchhchHHHHHHHHHHhc----C---------CCceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcC
Q 047930 151 KDYEAFESRMSTLNDILDALK----N---------PDVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQ 217 (395)
Q Consensus 151 ~~~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~ 217 (395)
.....+.|++..++++.+.+. . ..++-+.++|++|+|||++|+.+++..... | +.+..
T Consensus 119 ~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~--~-----~~v~~-- 189 (364)
T TIGR01242 119 VSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNAT--F-----IRVVG-- 189 (364)
T ss_pred CCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCC--E-----Eecch--
Confidence 344567888888888877653 1 124568899999999999999999876532 2 22211
Q ss_pred CHHHHHHHHHHHhCCCccccchhhhHHHHHHHHhcCCeEEEEEeCCCCcc----------------ccchhccccC--CC
Q 047930 218 DIRKIQGEFADKLGLTLHEETESGRARSLCNRLKKEKRILVILDNIWENL----------------DFQAVGIPHG--DG 279 (395)
Q Consensus 218 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~----------------~~~~l~~~l~--~~ 279 (395)
.++..... + ........+.+......+.+|+|||++... .+..+...+. ..
T Consensus 190 --~~l~~~~~---g------~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~ 258 (364)
T TIGR01242 190 --SELVRKYI---G------EGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDP 258 (364)
T ss_pred --HHHHHHhh---h------HHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCC
Confidence 11111111 1 011122333333333567899999986531 0111111111 12
Q ss_pred CCCcEEEEeecchhhh-hhcC---CCcceeecCCCChHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCch
Q 047930 280 HKGSKVLLTARSLDVL-SRKM---DSQQNFSFDVLKEDEAWSLFKKMAGDYIEGSEFKWVAREVAKECAGLP 347 (395)
Q Consensus 280 ~~gs~iivTtR~~~va-~~~~---~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~GlP 347 (395)
..+.+||.||...... .... .....+.+...+.++..++|...+......++.. ...+++.+.|..
T Consensus 259 ~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~--~~~la~~t~g~s 328 (364)
T TIGR01242 259 RGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVD--LEAIAKMTEGAS 328 (364)
T ss_pred CCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCC--HHHHHHHcCCCC
Confidence 3466788888754322 1111 2245789999999999999998875433332211 467888888874
No 58
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.68 E-value=9.8e-07 Score=84.15 Aligned_cols=183 Identities=16% Similarity=0.196 Sum_probs=106.5
Q ss_pred cccccchhchHHHHHHHHHHhcCCCc-eEEEEEecCCCcHHHHHHHHHHHhccc------CCCCE-EEEEEeCCcCCHHH
Q 047930 150 NKDYEAFESRMSTLNDILDALKNPDV-NMLGIYGMGGIGKTTLAKEVARKAENE------KLFDQ-VIFVEVSQIQDIRK 221 (395)
Q Consensus 150 ~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~------~~f~~-~~wv~~s~~~~~~~ 221 (395)
|....+++|.+...+.+..++..++. +.+.++|+.|+||||+|+.+.+..... ..|.. ++.+.........+
T Consensus 13 P~~~~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 92 (367)
T PRK14970 13 PQTFDDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSVDD 92 (367)
T ss_pred CCcHHhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCHHH
Confidence 34456788999999999998886654 578899999999999999998775431 11221 11121111111111
Q ss_pred HHHHHHHHhCCCccccchhhhHHHHHHHHhcCCeEEEEEeCCCCcc--ccchhccccCCCCCCcEEEEeec-chhhhhhc
Q 047930 222 IQGEFADKLGLTLHEETESGRARSLCNRLKKEKRILVILDNIWENL--DFQAVGIPHGDGHKGSKVLLTAR-SLDVLSRK 298 (395)
Q Consensus 222 ~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iivTtR-~~~va~~~ 298 (395)
.+++++.+.... . .+++-++++|++.... .+..+...+......+.+|++|. ...+....
T Consensus 93 -i~~l~~~~~~~p---------------~-~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l 155 (367)
T PRK14970 93 -IRNLIDQVRIPP---------------Q-TGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTI 155 (367)
T ss_pred -HHHHHHHHhhcc---------------c-cCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHH
Confidence 222222221100 0 1345689999986542 34444433333233455555553 33332222
Q ss_pred CCCcceeecCCCChHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHHH
Q 047930 299 MDSQQNFSFDVLKEDEAWSLFKKMAGDYIEGSEFKWVAREVAKECAGLPVSI 350 (395)
Q Consensus 299 ~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai 350 (395)
......+++.++++++....+.+.+......-+ .+....+++.++|.+-.+
T Consensus 156 ~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~i~-~~al~~l~~~~~gdlr~~ 206 (367)
T PRK14970 156 LSRCQIFDFKRITIKDIKEHLAGIAVKEGIKFE-DDALHIIAQKADGALRDA 206 (367)
T ss_pred HhcceeEecCCccHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHhCCCCHHHH
Confidence 344568999999999999999887743222111 246788888999876643
No 59
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.67 E-value=8.3e-07 Score=88.75 Aligned_cols=200 Identities=13% Similarity=0.151 Sum_probs=116.3
Q ss_pred cccccchhchHHHHHHHHHHhcCCCc-eEEEEEecCCCcHHHHHHHHHHHhcccCCCC--EEEEEEeCCcCCHHHHHHHH
Q 047930 150 NKDYEAFESRMSTLNDILDALKNPDV-NMLGIYGMGGIGKTTLAKEVARKAENEKLFD--QVIFVEVSQIQDIRKIQGEF 226 (395)
Q Consensus 150 ~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~--~~~wv~~s~~~~~~~~~~~i 226 (395)
|.....++|.+..++.|.+++..++. ..+.++|+.|+||||+|+.+.+......... ...+- .+....-.+.|
T Consensus 20 P~~f~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~----~cg~c~~C~~i 95 (598)
T PRK09111 20 PQTFDDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTID----LCGVGEHCQAI 95 (598)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccc----cCcccHHHHHH
Confidence 34566789999999999998886664 4688999999999999999988754321110 00000 00111111122
Q ss_pred HHHhCCCc-----cccchhhhHHHHHHHHh----cCCeEEEEEeCCCCcc--ccchhccccCCCCCCcEEEEee-cchhh
Q 047930 227 ADKLGLTL-----HEETESGRARSLCNRLK----KEKRILVILDNIWENL--DFQAVGIPHGDGHKGSKVLLTA-RSLDV 294 (395)
Q Consensus 227 ~~~l~~~~-----~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iivTt-R~~~v 294 (395)
...-.... ......+.+..+.+.+. .+++-++|+|++.... ..+.+...+.....++.+|++| ....+
T Consensus 96 ~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kl 175 (598)
T PRK09111 96 MEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKV 175 (598)
T ss_pred hcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhh
Confidence 21111100 00011122333333332 1455689999996553 3455555554444566666555 43444
Q ss_pred hhhcCCCcceeecCCCChHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHHHHHHH
Q 047930 295 LSRKMDSQQNFSFDVLKEDEAWSLFKKMAGDYIEGSEFKWVAREVAKECAGLPVSIVTVA 354 (395)
Q Consensus 295 a~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~i~ 354 (395)
.......+..+++.+++.++....+.+.+......-+ .+....|++.++|.+.-+....
T Consensus 176 l~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i~-~eAl~lIa~~a~Gdlr~al~~L 234 (598)
T PRK09111 176 PVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEVE-DEALALIARAAEGSVRDGLSLL 234 (598)
T ss_pred hHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCCHHHHHHHH
Confidence 3333445678999999999999999988743222111 2357889999999987665444
No 60
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.66 E-value=9.1e-08 Score=81.83 Aligned_cols=48 Identities=23% Similarity=0.341 Sum_probs=34.3
Q ss_pred chhchHHHHHHHHHHhc---CCCceEEEEEecCCCcHHHHHHHHHHHhccc
Q 047930 155 AFESRMSTLNDILDALK---NPDVNMLGIYGMGGIGKTTLAKEVARKAENE 202 (395)
Q Consensus 155 ~~~gr~~~~~~l~~~l~---~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 202 (395)
.|+||+++++++.+.+. ....+++.|+|++|+|||+|++.++......
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 38899999999999983 4557899999999999999999999887665
No 61
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.66 E-value=1.2e-06 Score=87.13 Aligned_cols=191 Identities=15% Similarity=0.100 Sum_probs=109.8
Q ss_pred cccccchhchHHHHHHHHHHhcCCCceE-EEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHHH
Q 047930 150 NKDYEAFESRMSTLNDILDALKNPDVNM-LGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFAD 228 (395)
Q Consensus 150 ~~~~~~~~gr~~~~~~l~~~l~~~~~~v-i~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 228 (395)
|.....++|.+..++.|..++..++... +.++|+.|+||||+|+.+..........+. .++......+.|..
T Consensus 9 P~~f~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~-------~pCg~C~~C~~i~~ 81 (584)
T PRK14952 9 PATFAEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTA-------TPCGVCESCVALAP 81 (584)
T ss_pred CCcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCC-------CcccccHHHHHhhc
Confidence 4456778899999999999988776554 689999999999999999976543211100 00000011111110
Q ss_pred HhCC-------CccccchhhhHHHHHHHHh----cCCeEEEEEeCCCCc--cccchhccccCCCCCCcEEEEee-cchhh
Q 047930 229 KLGL-------TLHEETESGRARSLCNRLK----KEKRILVILDNIWEN--LDFQAVGIPHGDGHKGSKVLLTA-RSLDV 294 (395)
Q Consensus 229 ~l~~-------~~~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTt-R~~~v 294 (395)
.-+. ........+.+..+.+.+. .+++-++|||++... ...+.|...+......+.+|++| ....+
T Consensus 82 ~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kl 161 (584)
T PRK14952 82 NGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKV 161 (584)
T ss_pred ccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhh
Confidence 0000 0000001112222332221 245568999999654 34555555554444455555544 44444
Q ss_pred hhhcCCCcceeecCCCChHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchH
Q 047930 295 LSRKMDSQQNFSFDVLKEDEAWSLFKKMAGDYIEGSEFKWVAREVAKECAGLPV 348 (395)
Q Consensus 295 a~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPl 348 (395)
.......+..+++.+++.++..+.+.+.+......-+ .+....|++.++|.+-
T Consensus 162 l~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i~-~~al~~Ia~~s~GdlR 214 (584)
T PRK14952 162 LPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVVVD-DAVYPLVIRAGGGSPR 214 (584)
T ss_pred HHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCCHH
Confidence 4333455678999999999999888887643222111 2356778888999775
No 62
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.66 E-value=7.9e-07 Score=88.28 Aligned_cols=200 Identities=16% Similarity=0.129 Sum_probs=113.2
Q ss_pred cccccchhchHHHHHHHHHHhcCCC-ceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHHH
Q 047930 150 NKDYEAFESRMSTLNDILDALKNPD-VNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFAD 228 (395)
Q Consensus 150 ~~~~~~~~gr~~~~~~l~~~l~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 228 (395)
|.....++|.+..+..|...+..++ ...+.++|+.|+||||+|+.+.+.......... ..++.....+.|..
T Consensus 12 P~sf~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~-------~pCg~C~sC~~i~~ 84 (624)
T PRK14959 12 PQTFAEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTG-------EPCNTCEQCRKVTQ 84 (624)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCC-------CCCcccHHHHHHhc
Confidence 3445677898888888888777655 467888999999999999999987643211100 00111111111111
Q ss_pred HhCCCccc-----cchhhhHHHHHHHHh----cCCeEEEEEeCCCCc--cccchhccccCCCCCCcEEEEeecc-hhhhh
Q 047930 229 KLGLTLHE-----ETESGRARSLCNRLK----KEKRILVILDNIWEN--LDFQAVGIPHGDGHKGSKVLLTARS-LDVLS 296 (395)
Q Consensus 229 ~l~~~~~~-----~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR~-~~va~ 296 (395)
........ ....+.+..+.+.+. .+++-++|||++... ...+.|...+........+|++|.+ ..+..
T Consensus 85 g~hpDv~eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll~ 164 (624)
T PRK14959 85 GMHVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPV 164 (624)
T ss_pred CCCCceEEEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhhH
Confidence 10000000 000111222222221 245679999999655 3345554444333334556565544 44432
Q ss_pred hcCCCcceeecCCCChHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCch-HHHHHHHHHh
Q 047930 297 RKMDSQQNFSFDVLKEDEAWSLFKKMAGDYIEGSEFKWVAREVAKECAGLP-VSIVTVARAL 357 (395)
Q Consensus 297 ~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~GlP-lai~~i~~~l 357 (395)
........+++.+++.++....+...+......- -.+.+..|++.++|.+ .|+..+..++
T Consensus 165 TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi~i-d~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 165 TIVSRCQHFTFTRLSEAGLEAHLTKVLGREGVDY-DPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred HHHhhhhccccCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 2334456899999999999999988764322111 1236788999999965 5776665444
No 63
>PRK09087 hypothetical protein; Validated
Probab=98.65 E-value=1.4e-06 Score=76.91 Aligned_cols=159 Identities=15% Similarity=0.108 Sum_probs=96.5
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCccccchhhhHHHHHHHHhcCC
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFADKLGLTLHEETESGRARSLCNRLKKEK 254 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 254 (395)
.+.+.|+|++|+|||+|++.++..... .|++.. .+..++. ..+..
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~~-------~~i~~~------~~~~~~~--------------------~~~~~-- 88 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSDA-------LLIHPN------EIGSDAA--------------------NAAAE-- 88 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcCC-------EEecHH------HcchHHH--------------------Hhhhc--
Confidence 456899999999999999988875421 133221 1111111 12211
Q ss_pred eEEEEEeCCCCcc----ccchhccccCCCCCCcEEEEeecchhhh--------hhcCCCcceeecCCCChHHHHHHHHHh
Q 047930 255 RILVILDNIWENL----DFQAVGIPHGDGHKGSKVLLTARSLDVL--------SRKMDSQQNFSFDVLKEDEAWSLFKKM 322 (395)
Q Consensus 255 r~LlVlDdv~~~~----~~~~l~~~l~~~~~gs~iivTtR~~~va--------~~~~~~~~~~~l~~L~~~e~~~lf~~~ 322 (395)
-+|+|||+.... .+-.+...+ ...|..+|+|++...-. .........+++++++.++-..++.+.
T Consensus 89 -~~l~iDDi~~~~~~~~~lf~l~n~~--~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~ 165 (226)
T PRK09087 89 -GPVLIEDIDAGGFDETGLFHLINSV--RQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKL 165 (226)
T ss_pred -CeEEEECCCCCCCCHHHHHHHHHHH--HhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHH
Confidence 378889995432 222222222 12366788888742210 112345578999999999999999998
Q ss_pred hCCCCCCCchHHHHHHHHHHcCCchHHHHHHHHHh------hCC--CHHHHHHHHHHh
Q 047930 323 AGDYIEGSEFKWVAREVAKECAGLPVSIVTVARAL------RNK--RLFEWKDALEQL 372 (395)
Q Consensus 323 ~~~~~~~~~~~~~~~~i~~~c~GlPlai~~i~~~l------~~~--~~~~w~~~l~~l 372 (395)
+...... --+++.+-|++.+.|.+-++..+-..| ..+ +....+.+++.+
T Consensus 166 ~~~~~~~-l~~ev~~~La~~~~r~~~~l~~~l~~L~~~~~~~~~~it~~~~~~~l~~~ 222 (226)
T PRK09087 166 FADRQLY-VDPHVVYYLVSRMERSLFAAQTIVDRLDRLALERKSRITRALAAEVLNEM 222 (226)
T ss_pred HHHcCCC-CCHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhh
Confidence 8532211 123478889999999888776543333 122 667777777653
No 64
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.64 E-value=3.1e-06 Score=79.49 Aligned_cols=206 Identities=13% Similarity=0.120 Sum_probs=130.3
Q ss_pred ccchhchHHHHHHHHHHhc----CCCceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHHH
Q 047930 153 YEAFESRMSTLNDILDALK----NPDVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFAD 228 (395)
Q Consensus 153 ~~~~~gr~~~~~~l~~~l~----~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 228 (395)
.....||+.+++.+..++. .+..+.+-|.|-+|+|||.+...++.+......--+++++++..-.....++..|..
T Consensus 149 p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~~ 228 (529)
T KOG2227|consen 149 PGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKIFS 228 (529)
T ss_pred CCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHHHH
Confidence 4557899999998888765 456788999999999999999999988764322235678887766677888888887
Q ss_pred HhCCC-ccccchhhhHHHHHHHHhcCC-eEEEEEeCCCCccc--cchhccccC-CCCCCcEEEEee---------cchhh
Q 047930 229 KLGLT-LHEETESGRARSLCNRLKKEK-RILVILDNIWENLD--FQAVGIPHG-DGHKGSKVLLTA---------RSLDV 294 (395)
Q Consensus 229 ~l~~~-~~~~~~~~~~~~l~~~l~~~k-r~LlVlDdv~~~~~--~~~l~~~l~-~~~~gs~iivTt---------R~~~v 294 (395)
.+-.. .......+....+.+...+.+ .+|+|+|+.+.... -..+...|. +.-+++++|+.. |.-.-
T Consensus 229 ~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR~Lpr 308 (529)
T KOG2227|consen 229 SLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDRFLPR 308 (529)
T ss_pred HHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHHHhhh
Confidence 77211 111122334455556665444 78999999975421 111222232 233566665532 21111
Q ss_pred h-hhcCCCcceeecCCCChHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHHHHHHHHHhh
Q 047930 295 L-SRKMDSQQNFSFDVLKEDEAWSLFKKMAGDYIEGSEFKWVAREVAKECAGLPVSIVTVARALR 358 (395)
Q Consensus 295 a-~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~i~~~l~ 358 (395)
. ....-....+...|.+.++-.++|..++......+.+...++-++++|.|.-=-+..+-.+.+
T Consensus 309 L~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R 373 (529)
T KOG2227|consen 309 LNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCR 373 (529)
T ss_pred hhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHHH
Confidence 0 101223457889999999999999999865544444444556666666665544444444444
No 65
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.63 E-value=2.2e-06 Score=73.87 Aligned_cols=178 Identities=20% Similarity=0.199 Sum_probs=92.6
Q ss_pred cccccchhchHHHHHHHHHHhc-----CCCceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHH
Q 047930 150 NKDYEAFESRMSTLNDILDALK-----NPDVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQG 224 (395)
Q Consensus 150 ~~~~~~~~gr~~~~~~l~~~l~-----~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 224 (395)
|....+|+|.+..+..+.-.+. +.....+.++|++|+||||||..+.+..... | .+.+.+.-....+
T Consensus 20 P~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~--~---~~~sg~~i~k~~d--- 91 (233)
T PF05496_consen 20 PKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVN--F---KITSGPAIEKAGD--- 91 (233)
T ss_dssp -SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT----E---EEEECCC--SCHH---
T ss_pred CCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCC--e---EeccchhhhhHHH---
Confidence 4567789998887776543332 3457788999999999999999999987643 3 2333221111111
Q ss_pred HHHHHhCCCccccchhhhHHHHHHHHhcCCeEEEEEeCCCCcc--c-------cchhcc--ccCCC----------CCCc
Q 047930 225 EFADKLGLTLHEETESGRARSLCNRLKKEKRILVILDNIWENL--D-------FQAVGI--PHGDG----------HKGS 283 (395)
Q Consensus 225 ~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~--~-------~~~l~~--~l~~~----------~~gs 283 (395)
+..+...+. ++-+|++|++.... . .++... ....+ .+-+
T Consensus 92 ------------------l~~il~~l~--~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FT 151 (233)
T PF05496_consen 92 ------------------LAAILTNLK--EGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFT 151 (233)
T ss_dssp ------------------HHHHHHT----TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----E
T ss_pred ------------------HHHHHHhcC--CCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCce
Confidence 112222232 34577788885431 1 111111 11001 1122
Q ss_pred EEEEeecchhhhhhcCCCcc-eeecCCCChHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHHHHHHHHH
Q 047930 284 KVLLTARSLDVLSRKMDSQQ-NFSFDVLKEDEAWSLFKKMAGDYIEGSEFKWVAREVAKECAGLPVSIVTVARA 356 (395)
Q Consensus 284 ~iivTtR~~~va~~~~~~~~-~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~i~~~ 356 (395)
-|=.|||...+.....+... +.+|+..+.+|-.++..+.+.....+- -.+.+.+|+.+|.|-|--..-+-.-
T Consensus 152 ligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i-~~~~~~~Ia~rsrGtPRiAnrll~r 224 (233)
T PF05496_consen 152 LIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNIEI-DEDAAEEIARRSRGTPRIANRLLRR 224 (233)
T ss_dssp EEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-EE--HHHHHHHHHCTTTSHHHHHHHHHH
T ss_pred EeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCCCc-CHHHHHHHHHhcCCChHHHHHHHHH
Confidence 34458887554322223333 468999999999999998875322222 2347899999999999765544433
No 66
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.62 E-value=2.1e-06 Score=86.50 Aligned_cols=197 Identities=14% Similarity=0.153 Sum_probs=114.8
Q ss_pred cccccchhchHHHHHHHHHHhcCCCc-eEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHHH
Q 047930 150 NKDYEAFESRMSTLNDILDALKNPDV-NMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFAD 228 (395)
Q Consensus 150 ~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 228 (395)
+.....++|.+..++.|..++..++. ..+.++|+.|+||||+|+.+.+......... ....++.....+.+..
T Consensus 12 P~~~~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~------~~~~c~~c~~c~~i~~ 85 (585)
T PRK14950 12 SQTFAELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDP------KGRPCGTCEMCRAIAE 85 (585)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCC------CCCCCccCHHHHHHhc
Confidence 34456788999989888888876654 4567999999999999999998754221100 0001112223333332
Q ss_pred HhCCCcc-----ccchhhhHHHHHHHHh----cCCeEEEEEeCCCCc--cccchhccccCCCCCCcEEEEeecc-hhhhh
Q 047930 229 KLGLTLH-----EETESGRARSLCNRLK----KEKRILVILDNIWEN--LDFQAVGIPHGDGHKGSKVLLTARS-LDVLS 296 (395)
Q Consensus 229 ~l~~~~~-----~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR~-~~va~ 296 (395)
....... .....+.+..+.+.+. .+++-++|||++... ...+.+...+......+.+|++|.+ ..+..
T Consensus 86 ~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~ 165 (585)
T PRK14950 86 GSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPA 165 (585)
T ss_pred CCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhH
Confidence 2211100 0011122333333332 145679999999654 3455554444333345666666544 33332
Q ss_pred hcCCCcceeecCCCChHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHHHHHH
Q 047930 297 RKMDSQQNFSFDVLKEDEAWSLFKKMAGDYIEGSEFKWVAREVAKECAGLPVSIVTV 353 (395)
Q Consensus 297 ~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~i 353 (395)
........+.+.+++.++....+...+......-+ .+....|++.++|.+..+...
T Consensus 166 tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~i~-~eal~~La~~s~Gdlr~al~~ 221 (585)
T PRK14950 166 TILSRCQRFDFHRHSVADMAAHLRKIAAAEGINLE-PGALEAIARAATGSMRDAENL 221 (585)
T ss_pred HHHhccceeeCCCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCCHHHHHHH
Confidence 23344568899999999999988887743222111 246788999999988655443
No 67
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.60 E-value=9.8e-07 Score=78.50 Aligned_cols=167 Identities=14% Similarity=0.092 Sum_probs=99.5
Q ss_pred HHHHHHHHHhcCCCceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCccccchh
Q 047930 161 STLNDILDALKNPDVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFADKLGLTLHEETES 240 (395)
Q Consensus 161 ~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~ 240 (395)
..+..+..+....+...+.|+|+.|+|||+|++.+++....+ -..+.|+++.....
T Consensus 31 ~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~--~~~v~y~~~~~~~~---------------------- 86 (235)
T PRK08084 31 SLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQR--GRAVGYVPLDKRAW---------------------- 86 (235)
T ss_pred HHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEEHHHHhh----------------------
Confidence 344445555444455688999999999999999999876533 23456666532100
Q ss_pred hhHHHHHHHHhcCCeEEEEEeCCCCc---cccch-h---ccccCCCCCCcEEEEeecchhhh--------hhcCCCccee
Q 047930 241 GRARSLCNRLKKEKRILVILDNIWEN---LDFQA-V---GIPHGDGHKGSKVLLTARSLDVL--------SRKMDSQQNF 305 (395)
Q Consensus 241 ~~~~~l~~~l~~~kr~LlVlDdv~~~---~~~~~-l---~~~l~~~~~gs~iivTtR~~~va--------~~~~~~~~~~ 305 (395)
....+.+.+. +--+|+|||+... ..|+. + ...+.. ..+.++|+||+...-. ...+....++
T Consensus 87 -~~~~~~~~~~--~~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e-~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~ 162 (235)
T PRK08084 87 -FVPEVLEGME--QLSLVCIDNIECIAGDELWEMAIFDLYNRILE-SGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIY 162 (235)
T ss_pred -hhHHHHHHhh--hCCEEEEeChhhhcCCHHHHHHHHHHHHHHHH-cCCCeEEEeCCCChHHcCcccHHHHHHHhCCcee
Confidence 0012222232 1248999999643 34443 2 222211 1224689998854211 1123345689
Q ss_pred ecCCCChHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHHHHHHHHH
Q 047930 306 SFDVLKEDEAWSLFKKMAGDYIEGSEFKWVAREVAKECAGLPVSIVTVARA 356 (395)
Q Consensus 306 ~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~i~~~ 356 (395)
++.++++++-.+++.+++..... .--+++..-|++.+.|..-.+..+-..
T Consensus 163 ~l~~~~~~~~~~~l~~~a~~~~~-~l~~~v~~~L~~~~~~d~r~l~~~l~~ 212 (235)
T PRK08084 163 KLQPLSDEEKLQALQLRARLRGF-ELPEDVGRFLLKRLDREMRTLFMTLDQ 212 (235)
T ss_pred eecCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHhhcCCHHHHHHHHHH
Confidence 99999999999999886643211 112347888999999877666554433
No 68
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.60 E-value=2.4e-06 Score=83.90 Aligned_cols=182 Identities=19% Similarity=0.187 Sum_probs=110.7
Q ss_pred cccccchhchHHHHHHHHHHhcCCCce-EEEEEecCCCcHHHHHHHHHHHhcccCC------------------CC-EEE
Q 047930 150 NKDYEAFESRMSTLNDILDALKNPDVN-MLGIYGMGGIGKTTLAKEVARKAENEKL------------------FD-QVI 209 (395)
Q Consensus 150 ~~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~~~~------------------f~-~~~ 209 (395)
|.....++|.+.....|...+..++.. ...++|+.|+||||+|+.+.+..-.... +. .++
T Consensus 10 P~~fdeiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~ 89 (535)
T PRK08451 10 PKHFDELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDII 89 (535)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEE
Confidence 345567889888888888888776654 5589999999999999998876532111 00 012
Q ss_pred EEEeCCcCCHHHHHHHHHHHhCCCccccchhhhHHHHHHHHh----cCCeEEEEEeCCCCc--cccchhccccCCCCCCc
Q 047930 210 FVEVSQIQDIRKIQGEFADKLGLTLHEETESGRARSLCNRLK----KEKRILVILDNIWEN--LDFQAVGIPHGDGHKGS 283 (395)
Q Consensus 210 wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs 283 (395)
.+..+......+ +..+.+... .+++-++|+|++... ...+.+...+......+
T Consensus 90 eldaas~~gId~---------------------IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t 148 (535)
T PRK08451 90 EMDAASNRGIDD---------------------IRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYV 148 (535)
T ss_pred EeccccccCHHH---------------------HHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCce
Confidence 222111111111 111211111 145668999999654 33455544443334466
Q ss_pred EEEEeecch-hhhhhcCCCcceeecCCCChHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHHHHHH
Q 047930 284 KVLLTARSL-DVLSRKMDSQQNFSFDVLKEDEAWSLFKKMAGDYIEGSEFKWVAREVAKECAGLPVSIVTV 353 (395)
Q Consensus 284 ~iivTtR~~-~va~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~i 353 (395)
++|++|.+. .+..........+++.+++.++....+.+.+......-+ .+.+..|++.++|.+--+..+
T Consensus 149 ~FIL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~-~~Al~~Ia~~s~GdlR~alnl 218 (535)
T PRK08451 149 KFILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVSYE-PEALEILARSGNGSLRDTLTL 218 (535)
T ss_pred EEEEEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCcHHHHHHH
Confidence 777666553 332223345678999999999999999887743322211 346778999999988555444
No 69
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.60 E-value=1.9e-06 Score=86.29 Aligned_cols=200 Identities=15% Similarity=0.183 Sum_probs=111.3
Q ss_pred cccccchhchHHHHHHHHHHhcCCCc-eEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEE-eCCcCCHHHHHHHHH
Q 047930 150 NKDYEAFESRMSTLNDILDALKNPDV-NMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVE-VSQIQDIRKIQGEFA 227 (395)
Q Consensus 150 ~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~-~s~~~~~~~~~~~i~ 227 (395)
|.....++|.+..+..|..++..++. ..+.++|+.|+||||+|+.+.+........+.-.|.. +..........+.+.
T Consensus 12 P~~f~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~~ 91 (620)
T PRK14954 12 PSKFADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDFD 91 (620)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHHh
Confidence 34556788998888888888876665 4488999999999999999988764322111001110 000111111111111
Q ss_pred HHhCCCc---c--ccchhhhHHHHHHHHh----cCCeEEEEEeCCCCcc--ccchhccccCCCCCCcEEEEee-cchhhh
Q 047930 228 DKLGLTL---H--EETESGRARSLCNRLK----KEKRILVILDNIWENL--DFQAVGIPHGDGHKGSKVLLTA-RSLDVL 295 (395)
Q Consensus 228 ~~l~~~~---~--~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iivTt-R~~~va 295 (395)
..-..+. + .....+.+..+.+.+. .+++-++|+|+++... ..+.+...+......+.+|++| +...+.
T Consensus 92 ~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kLl 171 (620)
T PRK14954 92 AGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIP 171 (620)
T ss_pred ccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhh
Confidence 1000000 0 0011122333333331 2455689999986543 3455555553333455555544 434443
Q ss_pred hhcCCCcceeecCCCChHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHHH
Q 047930 296 SRKMDSQQNFSFDVLKEDEAWSLFKKMAGDYIEGSEFKWVAREVAKECAGLPVSI 350 (395)
Q Consensus 296 ~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai 350 (395)
.........+++.+++.++....+.+.+......- -.+.++.|++.++|.+--+
T Consensus 172 ~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~I-~~eal~~La~~s~Gdlr~a 225 (620)
T PRK14954 172 ATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQI-DADALQLIARKAQGSMRDA 225 (620)
T ss_pred HHHHhhceEEecCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhCCCHHHH
Confidence 33345567999999999999888887664222111 1235788999999966533
No 70
>PF14516 AAA_35: AAA-like domain
Probab=98.60 E-value=5.8e-06 Score=77.40 Aligned_cols=200 Identities=12% Similarity=0.205 Sum_probs=119.2
Q ss_pred cccchhchHHHHHHHHHHhcCCCceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCc-----CCHHHHHHHH
Q 047930 152 DYEAFESRMSTLNDILDALKNPDVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQI-----QDIRKIQGEF 226 (395)
Q Consensus 152 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~-----~~~~~~~~~i 226 (395)
+.+-++.|...-+++.+.+.+++ ..+.|.|+..+|||||...+.+....+ .+. ++++++... .+.+.+++.+
T Consensus 9 ~~~~Yi~R~~~e~~~~~~i~~~G-~~~~I~apRq~GKTSll~~l~~~l~~~-~~~-~v~id~~~~~~~~~~~~~~f~~~~ 85 (331)
T PF14516_consen 9 DSPFYIERPPAEQECYQEIVQPG-SYIRIKAPRQMGKTSLLLRLLERLQQQ-GYR-CVYIDLQQLGSAIFSDLEQFLRWF 85 (331)
T ss_pred CCCcccCchHHHHHHHHHHhcCC-CEEEEECcccCCHHHHHHHHHHHHHHC-CCE-EEEEEeecCCCcccCCHHHHHHHH
Confidence 34456788866677777776543 478999999999999999999887654 233 457776542 3456666666
Q ss_pred HHHh----CCCccc--------cchhhhHHHHHHHHh--cCCeEEEEEeCCCCcccc----chhccccC-------CCC-
Q 047930 227 ADKL----GLTLHE--------ETESGRARSLCNRLK--KEKRILVILDNIWENLDF----QAVGIPHG-------DGH- 280 (395)
Q Consensus 227 ~~~l----~~~~~~--------~~~~~~~~~l~~~l~--~~kr~LlVlDdv~~~~~~----~~l~~~l~-------~~~- 280 (395)
+..+ +....- .+.......+.+.+. .+++.+|+||+++..... .++...+. ...
T Consensus 86 ~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~~ 165 (331)
T PF14516_consen 86 CEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNPI 165 (331)
T ss_pred HHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCcc
Confidence 5544 332210 011112223333332 268999999999754221 11111110 000
Q ss_pred -CCcEEEEeecch-hhh----hhcCCCcceeecCCCChHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHHHHHHH
Q 047930 281 -KGSKVLLTARSL-DVL----SRKMDSQQNFSFDVLKEDEAWSLFKKMAGDYIEGSEFKWVAREVAKECAGLPVSIVTVA 354 (395)
Q Consensus 281 -~gs~iivTtR~~-~va----~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~i~ 354 (395)
..-++++....+ ... .........++|++++.+|...|+.+.-... . ....++|...+||+|.-+..++
T Consensus 166 ~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~~-~----~~~~~~l~~~tgGhP~Lv~~~~ 240 (331)
T PF14516_consen 166 WQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLEF-S----QEQLEQLMDWTGGHPYLVQKAC 240 (331)
T ss_pred cceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhccC-C----HHHHHHHHHHHCCCHHHHHHHH
Confidence 111222222111 111 1112334589999999999999988764321 1 1237899999999999999999
Q ss_pred HHhhC
Q 047930 355 RALRN 359 (395)
Q Consensus 355 ~~l~~ 359 (395)
..+..
T Consensus 241 ~~l~~ 245 (331)
T PF14516_consen 241 YLLVE 245 (331)
T ss_pred HHHHH
Confidence 99974
No 71
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.58 E-value=4.9e-07 Score=80.36 Aligned_cols=186 Identities=20% Similarity=0.213 Sum_probs=121.0
Q ss_pred cccccccchhchHHHHHHHHHHhcCCCceEEEEEecCCCcHHHHHHHHHHHhcccCCCCE-EEEEEeCCcCCHHHHHHHH
Q 047930 148 LSNKDYEAFESRMSTLNDILDALKNPDVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQ-VIFVEVSQIQDIRKIQGEF 226 (395)
Q Consensus 148 ~~~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~-~~wv~~s~~~~~~~~~~~i 226 (395)
..|.....+.|.+..+.-|...+.....++...+|++|+|||+-|..+....-..+.|.+ +.-.++|......-+-..+
T Consensus 30 YrPkt~de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGisvvr~Ki 109 (346)
T KOG0989|consen 30 YRPKTFDELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGISVVREKI 109 (346)
T ss_pred hCCCcHHhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccccccchhhhh
Confidence 345556778898888888999888878889999999999999999999887665566765 4445665543322111111
Q ss_pred HHHhCCCccccchhhhHHHHHHHHh-----cCCe-EEEEEeCCCCc--cccchhccccCCCCCCcEEEEeecch-hhhhh
Q 047930 227 ADKLGLTLHEETESGRARSLCNRLK-----KEKR-ILVILDNIWEN--LDFQAVGIPHGDGHKGSKVLLTARSL-DVLSR 297 (395)
Q Consensus 227 ~~~l~~~~~~~~~~~~~~~l~~~l~-----~~kr-~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR~~-~va~~ 297 (395)
+. ..++.-... .-++ -++|||+.+.. +.|..+...+.+....++.|+.+... .+...
T Consensus 110 -k~-------------fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~p 175 (346)
T KOG0989|consen 110 -KN-------------FAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRP 175 (346)
T ss_pred -cC-------------HHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChH
Confidence 00 001110000 0233 47889999865 57888876665555667766655543 33222
Q ss_pred cCCCcceeecCCCChHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchH
Q 047930 298 KMDSQQNFSFDVLKEDEAWSLFKKMAGDYIEGSEFKWVAREVAKECAGLPV 348 (395)
Q Consensus 298 ~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPl 348 (395)
.......+..++|.+++...-+...+..+...-+ .+..+.|++.++|---
T Consensus 176 i~SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d-~~al~~I~~~S~GdLR 225 (346)
T KOG0989|consen 176 LVSRCQKFRFKKLKDEDIVDRLEKIASKEGVDID-DDALKLIAKISDGDLR 225 (346)
T ss_pred HHhhHHHhcCCCcchHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHcCCcHH
Confidence 3345568899999999999999988854333222 2357789999988643
No 72
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.58 E-value=3.1e-06 Score=85.24 Aligned_cols=184 Identities=14% Similarity=0.184 Sum_probs=112.1
Q ss_pred ccccchhchHHHHHHHHHHhcCCCce-EEEEEecCCCcHHHHHHHHHHHhccc---------------------CCCCEE
Q 047930 151 KDYEAFESRMSTLNDILDALKNPDVN-MLGIYGMGGIGKTTLAKEVARKAENE---------------------KLFDQV 208 (395)
Q Consensus 151 ~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~~---------------------~~f~~~ 208 (395)
.....++|.+...+.|..++..++.. .+.++|+.|+||||+|+.+....... .+|+.
T Consensus 14 ~~f~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~- 92 (614)
T PRK14971 14 STFESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNI- 92 (614)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCce-
Confidence 44567889999999999998876654 47899999999999999988765321 12332
Q ss_pred EEEEeCCcCCHHHHHHHHHHHhCCCccccchhhhHHHHHHHHhcCCeEEEEEeCCCCc--cccchhccccCCCCCCcEEE
Q 047930 209 IFVEVSQIQDIRKIQGEFADKLGLTLHEETESGRARSLCNRLKKEKRILVILDNIWEN--LDFQAVGIPHGDGHKGSKVL 286 (395)
Q Consensus 209 ~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ii 286 (395)
..+..+......++ ++++.++.... ..+++-++|||++... ..++.+...+.....++.+|
T Consensus 93 ~~ld~~~~~~vd~I-r~li~~~~~~P----------------~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifI 155 (614)
T PRK14971 93 HELDAASNNSVDDI-RNLIEQVRIPP----------------QIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFI 155 (614)
T ss_pred EEecccccCCHHHH-HHHHHHHhhCc----------------ccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEE
Confidence 22222222222221 12222211100 0144568899998654 34555655554434456655
Q ss_pred Eee-cchhhhhhcCCCcceeecCCCChHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHHHHHH
Q 047930 287 LTA-RSLDVLSRKMDSQQNFSFDVLKEDEAWSLFKKMAGDYIEGSEFKWVAREVAKECAGLPVSIVTV 353 (395)
Q Consensus 287 vTt-R~~~va~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~i 353 (395)
++| ....+.......+..+++.++++++....+.+.+.......+ .+.+..|++.++|.+--+...
T Consensus 156 L~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~i~-~~al~~La~~s~gdlr~al~~ 222 (614)
T PRK14971 156 LATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGITAE-PEALNVIAQKADGGMRDALSI 222 (614)
T ss_pred EEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCCHHHHHHH
Confidence 544 444444334456678999999999999999887743322211 235788999999977644433
No 73
>PRK08727 hypothetical protein; Validated
Probab=98.57 E-value=1.1e-06 Score=78.20 Aligned_cols=171 Identities=17% Similarity=0.154 Sum_probs=98.8
Q ss_pred ccchhchH-HHHHHHHHHhcCCCceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHHHHhC
Q 047930 153 YEAFESRM-STLNDILDALKNPDVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFADKLG 231 (395)
Q Consensus 153 ~~~~~gr~-~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 231 (395)
.++|++.. ..+..+.....+.....+.|+|..|+|||.|++.+++....+ ...+.|+++.. ....+
T Consensus 18 f~~f~~~~~n~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~--~~~~~y~~~~~------~~~~~----- 84 (233)
T PRK08727 18 FDSYIAAPDGLLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAAEQA--GRSSAYLPLQA------AAGRL----- 84 (233)
T ss_pred hhhccCCcHHHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEEeHHH------hhhhH-----
Confidence 34455432 333333333333334569999999999999999998876543 23455665322 11111
Q ss_pred CCccccchhhhHHHHHHHHhcCCeEEEEEeCCCCcc---ccch-hccccCC-CCCCcEEEEeecchhhh--------hhc
Q 047930 232 LTLHEETESGRARSLCNRLKKEKRILVILDNIWENL---DFQA-VGIPHGD-GHKGSKVLLTARSLDVL--------SRK 298 (395)
Q Consensus 232 ~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~---~~~~-l~~~l~~-~~~gs~iivTtR~~~va--------~~~ 298 (395)
....+.+. +.-+|||||+.... .|.. +...+.. ..+|..+|+|++...-. ...
T Consensus 85 ------------~~~~~~l~--~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SR 150 (233)
T PRK08727 85 ------------RDALEALE--GRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSR 150 (233)
T ss_pred ------------HHHHHHHh--cCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHH
Confidence 12223332 34599999996442 2332 2211111 12356799999853210 111
Q ss_pred CCCcceeecCCCChHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHHHH
Q 047930 299 MDSQQNFSFDVLKEDEAWSLFKKMAGDYIEGSEFKWVAREVAKECAGLPVSIV 351 (395)
Q Consensus 299 ~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~ 351 (395)
......+++++++.++...++.+.+......- -.+...-|++.|+|-.-.+.
T Consensus 151 l~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~l-~~e~~~~La~~~~rd~r~~l 202 (233)
T PRK08727 151 LAQCIRIGLPVLDDVARAAVLRERAQRRGLAL-DEAAIDWLLTHGERELAGLV 202 (233)
T ss_pred HhcCceEEecCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHhCCCCHHHHH
Confidence 22346899999999999999998764222111 13467889999988766653
No 74
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.56 E-value=2.8e-06 Score=85.80 Aligned_cols=188 Identities=19% Similarity=0.170 Sum_probs=108.1
Q ss_pred cccccchhchHHHHHHHHHHhcCCCc-eEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHHH
Q 047930 150 NKDYEAFESRMSTLNDILDALKNPDV-NMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFAD 228 (395)
Q Consensus 150 ~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 228 (395)
|.....++|.+..+..|..++..++. +...++|+.|+||||+|+.++...-.....+ ...+.......
T Consensus 14 P~~f~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~---------~~~pC~~C~~~-- 82 (725)
T PRK07133 14 PKTFDDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTD---------LLEPCQECIEN-- 82 (725)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCC---------CCCchhHHHHh--
Confidence 34456788998888889998886654 4567999999999999999987643211100 00000000000
Q ss_pred HhCCCcc-----c--cchhhhHHHHHHHHh----cCCeEEEEEeCCCCc--cccchhccccCCCCCCcEEE-Eeecchhh
Q 047930 229 KLGLTLH-----E--ETESGRARSLCNRLK----KEKRILVILDNIWEN--LDFQAVGIPHGDGHKGSKVL-LTARSLDV 294 (395)
Q Consensus 229 ~l~~~~~-----~--~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ii-vTtR~~~v 294 (395)
.+...+ . ....+.+..+.+.+. .+++-++|+|++... ..+..+...+-.....+.+| +|+....+
T Consensus 83 -~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KL 161 (725)
T PRK07133 83 -VNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKI 161 (725)
T ss_pred -hcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhh
Confidence 000000 0 001122333433332 245669999999654 34555554443333344444 45544555
Q ss_pred hhhcCCCcceeecCCCChHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHHH
Q 047930 295 LSRKMDSQQNFSFDVLKEDEAWSLFKKMAGDYIEGSEFKWVAREVAKECAGLPVSI 350 (395)
Q Consensus 295 a~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai 350 (395)
.......+..+++.+++.++....+...+.......+ .+.+..|++.++|.+--+
T Consensus 162 l~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI~id-~eAl~~LA~lS~GslR~A 216 (725)
T PRK07133 162 PLTILSRVQRFNFRRISEDEIVSRLEFILEKENISYE-KNALKLIAKLSSGSLRDA 216 (725)
T ss_pred hHHHHhhceeEEccCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCCHHHH
Confidence 4333455679999999999999999876632222111 235678899998876533
No 75
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.56 E-value=2e-07 Score=86.84 Aligned_cols=89 Identities=19% Similarity=0.219 Sum_probs=60.7
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcC--CHHHHHHHHHHHhCC-Cccccchhh-----hHHHHH
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQ--DIRKIQGEFADKLGL-TLHEETESG-----RARSLC 247 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~--~~~~~~~~i~~~l~~-~~~~~~~~~-----~~~~l~ 247 (395)
.-..|+|++|+|||||++.+|+....+ +|+.++|+.+.+.. ...++++.+...+-. ..+...... .+-...
T Consensus 170 QR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~A 248 (416)
T PRK09376 170 QRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEKA 248 (416)
T ss_pred ceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHHH
Confidence 347799999999999999999998765 89999999998877 677777777632211 111111111 111222
Q ss_pred HHH-hcCCeEEEEEeCCCC
Q 047930 248 NRL-KKEKRILVILDNIWE 265 (395)
Q Consensus 248 ~~l-~~~kr~LlVlDdv~~ 265 (395)
+++ ..+++.||++|++..
T Consensus 249 e~~~e~G~dVlL~iDsItR 267 (416)
T PRK09376 249 KRLVEHGKDVVILLDSITR 267 (416)
T ss_pred HHHHHcCCCEEEEEEChHH
Confidence 222 357999999999953
No 76
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.55 E-value=1e-06 Score=84.35 Aligned_cols=204 Identities=17% Similarity=0.294 Sum_probs=114.8
Q ss_pred cccchhchHHHHHHHHHHhc----C---------CCceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCC
Q 047930 152 DYEAFESRMSTLNDILDALK----N---------PDVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQD 218 (395)
Q Consensus 152 ~~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~ 218 (395)
....+.|+++.++++.+.+. . ..++-|.++|++|+|||++|+.+++..... |+.++.
T Consensus 129 ~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~-------~i~v~~--- 198 (389)
T PRK03992 129 TYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNAT-------FIRVVG--- 198 (389)
T ss_pred CHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCC-------EEEeeh---
Confidence 34567788888888776552 1 345668899999999999999999876421 222211
Q ss_pred HHHHHHHHHHHhCCCccccchhhhHHHHHHHHhcCCeEEEEEeCCCCcc------------cc-chhcc---ccC--CCC
Q 047930 219 IRKIQGEFADKLGLTLHEETESGRARSLCNRLKKEKRILVILDNIWENL------------DF-QAVGI---PHG--DGH 280 (395)
Q Consensus 219 ~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~------------~~-~~l~~---~l~--~~~ 280 (395)
.++.... .+ ........+.+......+.+|+|||++... .. ..+.. .+. ...
T Consensus 199 -~~l~~~~---~g------~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~ 268 (389)
T PRK03992 199 -SELVQKF---IG------EGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPR 268 (389)
T ss_pred -HHHhHhh---cc------chHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCC
Confidence 1111111 01 011223334444444567899999997531 01 11111 111 122
Q ss_pred CCcEEEEeecchhhh-hhcC---CCcceeecCCCChHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCch-HHHHHH--
Q 047930 281 KGSKVLLTARSLDVL-SRKM---DSQQNFSFDVLKEDEAWSLFKKMAGDYIEGSEFKWVAREVAKECAGLP-VSIVTV-- 353 (395)
Q Consensus 281 ~gs~iivTtR~~~va-~~~~---~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~GlP-lai~~i-- 353 (395)
.+..||.||...... .... .....+++++.+.++-.++|+..+.......+.. ...+++.+.|.- --|..+
T Consensus 269 ~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~--~~~la~~t~g~sgadl~~l~~ 346 (389)
T PRK03992 269 GNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVD--LEELAELTEGASGADLKAICT 346 (389)
T ss_pred CCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCC--HHHHHHHcCCCCHHHHHHHHH
Confidence 356677777654322 1111 2245799999999999999998875433222211 456777777763 323322
Q ss_pred -HHHh--hC---C-CHHHHHHHHHHhcCCCC
Q 047930 354 -ARAL--RN---K-RLFEWKDALEQLRRPSS 377 (395)
Q Consensus 354 -~~~l--~~---~-~~~~w~~~l~~l~~~~~ 377 (395)
|++. +. . +.+....+++.......
T Consensus 347 eA~~~a~~~~~~~i~~~d~~~A~~~~~~~~~ 377 (389)
T PRK03992 347 EAGMFAIRDDRTEVTMEDFLKAIEKVMGKEE 377 (389)
T ss_pred HHHHHHHHcCCCCcCHHHHHHHHHHHhcccc
Confidence 2232 22 1 67777777777655443
No 77
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.55 E-value=4.7e-06 Score=81.69 Aligned_cols=183 Identities=17% Similarity=0.159 Sum_probs=107.9
Q ss_pred cccccchhchHHHHHHHHHHhcCCCce-EEEEEecCCCcHHHHHHHHHHHhcccC--C-----------------CCEEE
Q 047930 150 NKDYEAFESRMSTLNDILDALKNPDVN-MLGIYGMGGIGKTTLAKEVARKAENEK--L-----------------FDQVI 209 (395)
Q Consensus 150 ~~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~~~--~-----------------f~~~~ 209 (395)
|.....++|.+.....|..++..++.. ...++|+.|+||||+|+.++....... . +...+
T Consensus 12 P~~f~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~ 91 (486)
T PRK14953 12 PKFFKEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLI 91 (486)
T ss_pred CCcHHHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEE
Confidence 344567889998899999988866544 456899999999999999887643210 0 11112
Q ss_pred EEEeCCcCCHHHHHHHHHHHhCCCccccchhhhHHHHHHHHh----cCCeEEEEEeCCCCc--cccchhccccCCCCCCc
Q 047930 210 FVEVSQIQDIRKIQGEFADKLGLTLHEETESGRARSLCNRLK----KEKRILVILDNIWEN--LDFQAVGIPHGDGHKGS 283 (395)
Q Consensus 210 wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs 283 (395)
++..+..... +.+..+.+.+. .+++-++|+|++... ...+.+...+....+..
T Consensus 92 eidaas~~gv---------------------d~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~ 150 (486)
T PRK14953 92 EIDAASNRGI---------------------DDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRT 150 (486)
T ss_pred EEeCccCCCH---------------------HHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCe
Confidence 2221111111 11223333322 256679999999754 23444544443333345
Q ss_pred EEEEee-cchhhhhhcCCCcceeecCCCChHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHHHHHHH
Q 047930 284 KVLLTA-RSLDVLSRKMDSQQNFSFDVLKEDEAWSLFKKMAGDYIEGSEFKWVAREVAKECAGLPVSIVTVA 354 (395)
Q Consensus 284 ~iivTt-R~~~va~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~i~ 354 (395)
.+|++| +...+..........+++.+++.++....+.+.+.......+ .+....|++.++|.+..+....
T Consensus 151 v~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~id-~~al~~La~~s~G~lr~al~~L 221 (486)
T PRK14953 151 IFILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIEYE-EKALDLLAQASEGGMRDAASLL 221 (486)
T ss_pred EEEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCCHHHHHHHH
Confidence 555544 433333222344568999999999999988887643222111 2356788889999776444443
No 78
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.54 E-value=1.7e-06 Score=76.77 Aligned_cols=163 Identities=12% Similarity=0.081 Sum_probs=92.8
Q ss_pred HHHHHHHhc-CCCceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCccccchhh
Q 047930 163 LNDILDALK-NPDVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFADKLGLTLHEETESG 241 (395)
Q Consensus 163 ~~~l~~~l~-~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~ 241 (395)
+..+..+.. ......+.|+|..|+|||+||+.+++...... . ...+++..... .. +
T Consensus 29 ~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~-~-~~~~i~~~~~~------~~----~----------- 85 (227)
T PRK08903 29 VARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADASYGG-R-NARYLDAASPL------LA----F----------- 85 (227)
T ss_pred HHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCC-C-cEEEEehHHhH------HH----H-----------
Confidence 334444433 23446788999999999999999998754321 2 24455443211 00 0
Q ss_pred hHHHHHHHHhcCCeEEEEEeCCCCccccc--hhccccCC-CCCCc-EEEEeecchhhhhh-------cCCCcceeecCCC
Q 047930 242 RARSLCNRLKKEKRILVILDNIWENLDFQ--AVGIPHGD-GHKGS-KVLLTARSLDVLSR-------KMDSQQNFSFDVL 310 (395)
Q Consensus 242 ~~~~l~~~l~~~kr~LlVlDdv~~~~~~~--~l~~~l~~-~~~gs-~iivTtR~~~va~~-------~~~~~~~~~l~~L 310 (395)
... ...-+||+||+.....+. .+...+.. ...+. .+|+|++....... .......+++.++
T Consensus 86 ------~~~--~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl 157 (227)
T PRK08903 86 ------DFD--PEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPL 157 (227)
T ss_pred ------hhc--ccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCC
Confidence 011 223478999996543222 23222211 11233 36666654322110 1122468999999
Q ss_pred ChHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHHHHHHHHHh
Q 047930 311 KEDEAWSLFKKMAGDYIEGSEFKWVAREVAKECAGLPVSIVTVARAL 357 (395)
Q Consensus 311 ~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~i~~~l 357 (395)
++++-..++.+.+...... --.+....+++.+.|.|..+..+-..|
T Consensus 158 ~~~~~~~~l~~~~~~~~v~-l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 158 SDADKIAALKAAAAERGLQ-LADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred CHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 9988777777654322121 123467888999999999887776655
No 79
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.54 E-value=9.7e-07 Score=92.20 Aligned_cols=183 Identities=12% Similarity=0.118 Sum_probs=102.7
Q ss_pred ccccchhchHHHHHHHHHHhcCCCceEEEEEecCCCcHHHHHHHHHHHhcccCC----CCEEEE-EEeCCcCCHHHHHHH
Q 047930 151 KDYEAFESRMSTLNDILDALKNPDVNMLGIYGMGGIGKTTLAKEVARKAENEKL----FDQVIF-VEVSQIQDIRKIQGE 225 (395)
Q Consensus 151 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~----f~~~~w-v~~s~~~~~~~~~~~ 225 (395)
....+++||+.++.+++..|.......+.++|++|+||||+|+.+++....... .+..+| +..+.-..
T Consensus 184 ~~ld~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~a------- 256 (852)
T TIGR03345 184 GKIDPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQA------- 256 (852)
T ss_pred CCCCcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhc-------
Confidence 445678999999999999988776667889999999999999999987532211 122332 22221000
Q ss_pred HHHHhCCCccccchhhhHHHHHHHHh-cCCeEEEEEeCCCCcc-------ccc--hhccccCCCCCCcEEEEeecchhh-
Q 047930 226 FADKLGLTLHEETESGRARSLCNRLK-KEKRILVILDNIWENL-------DFQ--AVGIPHGDGHKGSKVLLTARSLDV- 294 (395)
Q Consensus 226 i~~~l~~~~~~~~~~~~~~~l~~~l~-~~kr~LlVlDdv~~~~-------~~~--~l~~~l~~~~~gs~iivTtR~~~v- 294 (395)
+ ......-...+..+.+.+. .+++.+|++|++.... .-+ .+..+....+ .-++|-+|.....
T Consensus 257 -----g-~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~G-~l~~IgaTT~~e~~ 329 (852)
T TIGR03345 257 -----G-ASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALARG-ELRTIAATTWAEYK 329 (852)
T ss_pred -----c-cccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhCC-CeEEEEecCHHHHh
Confidence 0 0000011123334444443 2568999999986432 111 1222322222 3455555554221
Q ss_pred -----hhhcCCCcceeecCCCChHHHHHHHHHhhC---CCCCCCchHHHHHHHHHHcCCch
Q 047930 295 -----LSRKMDSQQNFSFDVLKEDEAWSLFKKMAG---DYIEGSEFKWVAREVAKECAGLP 347 (395)
Q Consensus 295 -----a~~~~~~~~~~~l~~L~~~e~~~lf~~~~~---~~~~~~~~~~~~~~i~~~c~GlP 347 (395)
-.........+.+++++.++...++..... ....-.-..+....+++.+++.+
T Consensus 330 ~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi 390 (852)
T TIGR03345 330 KYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYI 390 (852)
T ss_pred hhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHccccc
Confidence 011223456899999999999999754442 11111112334566666666554
No 80
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.53 E-value=1.5e-06 Score=81.12 Aligned_cols=150 Identities=17% Similarity=0.186 Sum_probs=87.7
Q ss_pred ccccccchhchHHHHHHHHHHhcCCCc-eEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHH
Q 047930 149 SNKDYEAFESRMSTLNDILDALKNPDV-NMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFA 227 (395)
Q Consensus 149 ~~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 227 (395)
.|.....++|.+...+.+..++..++. ..+.++|++|+||||+|+.+++.... ....++.+. ..... .+..+
T Consensus 16 rP~~~~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~~~-----~~~~i~~~~-~~~~~-i~~~l 88 (316)
T PHA02544 16 RPSTIDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEVGA-----EVLFVNGSD-CRIDF-VRNRL 88 (316)
T ss_pred CCCcHHHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHhCc-----cceEeccCc-ccHHH-HHHHH
Confidence 345567788999999999998876654 56666999999999999999887531 123444443 22211 11111
Q ss_pred HHhCCCccccchhhhHHHHHHHHh-cCCeEEEEEeCCCCc--ccc-chhccccCCCCCCcEEEEeecchh-hhhhcCCCc
Q 047930 228 DKLGLTLHEETESGRARSLCNRLK-KEKRILVILDNIWEN--LDF-QAVGIPHGDGHKGSKVLLTARSLD-VLSRKMDSQ 302 (395)
Q Consensus 228 ~~l~~~~~~~~~~~~~~~l~~~l~-~~kr~LlVlDdv~~~--~~~-~~l~~~l~~~~~gs~iivTtR~~~-va~~~~~~~ 302 (395)
..+ ..... .+.+-+|||||+... ... ..+...+.....++++|+||.... +........
T Consensus 89 ~~~----------------~~~~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~ 152 (316)
T PHA02544 89 TRF----------------ASTVSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRC 152 (316)
T ss_pred HHH----------------HHhhcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhc
Confidence 111 11110 134568999999754 122 223222323345678888886532 212222344
Q ss_pred ceeecCCCChHHHHHHHHH
Q 047930 303 QNFSFDVLKEDEAWSLFKK 321 (395)
Q Consensus 303 ~~~~l~~L~~~e~~~lf~~ 321 (395)
..+.+...+.++...++..
T Consensus 153 ~~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 153 RVIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred eEEEeCCCCHHHHHHHHHH
Confidence 5778888888887766543
No 81
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.51 E-value=7.9e-06 Score=73.64 Aligned_cols=194 Identities=15% Similarity=0.138 Sum_probs=115.0
Q ss_pred HHHHHHHHHhc---CCCceEEEEEecCCCcHHHHHHHHHHHhcccCC----CCEEEEEEeCCcCCHHHHHHHHHHHhCCC
Q 047930 161 STLNDILDALK---NPDVNMLGIYGMGGIGKTTLAKEVARKAENEKL----FDQVIFVEVSQIQDIRKIQGEFADKLGLT 233 (395)
Q Consensus 161 ~~~~~l~~~l~---~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~----f~~~~wv~~s~~~~~~~~~~~i~~~l~~~ 233 (395)
+.++.|-+.+. ....+.+.|+|.+|.|||++++.+......... --.++.+.....++...++..|+.+++.+
T Consensus 44 ~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP 123 (302)
T PF05621_consen 44 EALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAP 123 (302)
T ss_pred HHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcc
Confidence 34555555554 345678999999999999999999986543211 12477888889999999999999999987
Q ss_pred ccccch-hhhHHHHHHHHhcCCeEEEEEeCCCCccc-----cchh---ccccCCCCCCcEEEEeecchhhhhh----cCC
Q 047930 234 LHEETE-SGRARSLCNRLKKEKRILVILDNIWENLD-----FQAV---GIPHGDGHKGSKVLLTARSLDVLSR----KMD 300 (395)
Q Consensus 234 ~~~~~~-~~~~~~l~~~l~~~kr~LlVlDdv~~~~~-----~~~l---~~~l~~~~~gs~iivTtR~~~va~~----~~~ 300 (395)
...... ..........+..-+--+||||++.+... -..+ ...+.+.-.=+-|.+-|+.-.-+-. ..+
T Consensus 124 ~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~QLa~ 203 (302)
T PF05621_consen 124 YRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRALRTDPQLAS 203 (302)
T ss_pred cCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccCHHHHh
Confidence 644322 22233334444444566999999976411 1111 1122222233445666654222100 012
Q ss_pred CcceeecCCCCh-HHHHHHHHHhhC----CCCCCCchHHHHHHHHHHcCCchHHHHHHH
Q 047930 301 SQQNFSFDVLKE-DEAWSLFKKMAG----DYIEGSEFKWVAREVAKECAGLPVSIVTVA 354 (395)
Q Consensus 301 ~~~~~~l~~L~~-~e~~~lf~~~~~----~~~~~~~~~~~~~~i~~~c~GlPlai~~i~ 354 (395)
....+.|++-.. ++...|+...-. ....+-...+++..|...++|+.--+..+-
T Consensus 204 RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~~ll 262 (302)
T PF05621_consen 204 RFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELSRLL 262 (302)
T ss_pred ccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHHHHH
Confidence 234566665554 444555544331 222223345689999999999976665553
No 82
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.50 E-value=2.2e-07 Score=86.01 Aligned_cols=210 Identities=25% Similarity=0.277 Sum_probs=137.0
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhcccCCC-CEEEEEEeCCcCCHHHHHHHHHHHhCCCccccchhhhHHHHHHHHhcC
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARKAENEKLF-DQVIFVEVSQIQDIRKIQGEFADKLGLTLHEETESGRARSLCNRLKKE 253 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f-~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 253 (395)
.+.+.++|.||+||||++-++.. ... -| +.+.++......+...+.-.+...++..... .......+..++. +
T Consensus 14 ~RlvtL~g~ggvgkttl~~~~a~-~~~--~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~--g~~~~~~~~~~~~-~ 87 (414)
T COG3903 14 LRLVTLTGAGGVGKTTLALQAAH-AAS--EYADGVAFVDLAPITDPALVFPTLAGALGLHVQP--GDSAVDTLVRRIG-D 87 (414)
T ss_pred hheeeeeccCccceehhhhhhHh-Hhh--hcccceeeeeccccCchhHhHHHHHhhccccccc--chHHHHHHHHHHh-h
Confidence 46799999999999999999998 332 35 5577888777777777777777767665432 1223445555555 6
Q ss_pred CeEEEEEeCCCCcc-ccchhccccCCCCCCcEEEEeecchhhhhhcCCCcceeecCCCChH-HHHHHHHHhhCCC----C
Q 047930 254 KRILVILDNIWENL-DFQAVGIPHGDGHKGSKVLLTARSLDVLSRKMDSQQNFSFDVLKED-EAWSLFKKMAGDY----I 327 (395)
Q Consensus 254 kr~LlVlDdv~~~~-~~~~l~~~l~~~~~gs~iivTtR~~~va~~~~~~~~~~~l~~L~~~-e~~~lf~~~~~~~----~ 327 (395)
+|.++|+||-.+.. .-..+.-.+..+.+...++.|+|+... .....+..+.+|+.. ++.++|...+... .
T Consensus 88 rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l----~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f~ 163 (414)
T COG3903 88 RRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAIL----VAGEVHRRVPSLSLFDEAIELFVCRAVLVALSFW 163 (414)
T ss_pred hhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhc----ccccccccCCccccCCchhHHHHHHHHHhcccee
Confidence 89999999986542 222233334445556678899997543 344557778888865 7899988776311 1
Q ss_pred CCCchHHHHHHHHHHcCCchHHHHHHHHHhhCCCHHHHHHHHHH----hcCCCCCCCCCchHhhhhhhcccC
Q 047930 328 EGSEFKWVAREVAKECAGLPVSIVTVARALRNKRLFEWKDALEQ----LRRPSSTNFKDIQPTAYKAIELSY 395 (395)
Q Consensus 328 ~~~~~~~~~~~i~~~c~GlPlai~~i~~~l~~~~~~~w~~~l~~----l~~~~~~~~~~~~~~i~~~L~lSY 395 (395)
....-.....+|.++.+|.|++|...++..+.....+--..++. +... .....--.+...+.+.+||
T Consensus 164 l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~-~r~a~~~~qtl~asl~ws~ 234 (414)
T COG3903 164 LTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGG-ARLAVLRQQTLRASLDWSY 234 (414)
T ss_pred ecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcc-cccchhHHHhccchhhhhh
Confidence 12223447889999999999999999999987765555544442 2221 1111112345666666665
No 83
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.49 E-value=6.3e-06 Score=80.21 Aligned_cols=175 Identities=15% Similarity=0.177 Sum_probs=105.5
Q ss_pred ccccchhchHHHHHHHHHHhcCCCc-eEEEEEecCCCcHHHHHHHHHHHhcccC---------------------CCCEE
Q 047930 151 KDYEAFESRMSTLNDILDALKNPDV-NMLGIYGMGGIGKTTLAKEVARKAENEK---------------------LFDQV 208 (395)
Q Consensus 151 ~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~---------------------~f~~~ 208 (395)
.....++|.+..+..|..++..++. ..+.++|+.|+||||+|+.+.+...... +++ .
T Consensus 14 ~~~~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d-~ 92 (451)
T PRK06305 14 QTFSEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD-V 92 (451)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc-e
Confidence 4456788999999999988876664 5678999999999999999988653321 111 1
Q ss_pred EEEEeCCcCCHHHHHHHHHHHhCCCccccchhhhHHHHHHHHh----cCCeEEEEEeCCCCc--cccchhccccCCCCCC
Q 047930 209 IFVEVSQIQDIRKIQGEFADKLGLTLHEETESGRARSLCNRLK----KEKRILVILDNIWEN--LDFQAVGIPHGDGHKG 282 (395)
Q Consensus 209 ~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~g 282 (395)
+++......... .+..+.+.+. .+++-++|+|++... ...+.+...+.....+
T Consensus 93 ~~i~g~~~~gid---------------------~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~ 151 (451)
T PRK06305 93 LEIDGASHRGIE---------------------DIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQH 151 (451)
T ss_pred EEeeccccCCHH---------------------HHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCC
Confidence 111111111111 1122222221 145678999998644 2334444444333345
Q ss_pred cEEEEeecc-hhhhhhcCCCcceeecCCCChHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchH
Q 047930 283 SKVLLTARS-LDVLSRKMDSQQNFSFDVLKEDEAWSLFKKMAGDYIEGSEFKWVAREVAKECAGLPV 348 (395)
Q Consensus 283 s~iivTtR~-~~va~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPl 348 (395)
+.+|++|.+ ..+..........+++.++++++....+.+.+......- -.+.+..|++.++|.+-
T Consensus 152 ~~~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~i-~~~al~~L~~~s~gdlr 217 (451)
T PRK06305 152 VKFFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIET-SREALLPIARAAQGSLR 217 (451)
T ss_pred ceEEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHH
Confidence 566666543 333222234556899999999999998888764222111 12357789999999764
No 84
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.48 E-value=3.6e-06 Score=84.46 Aligned_cols=196 Identities=16% Similarity=0.174 Sum_probs=110.5
Q ss_pred cccccchhchHHHHHHHHHHhcCCCc-eEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHHH
Q 047930 150 NKDYEAFESRMSTLNDILDALKNPDV-NMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFAD 228 (395)
Q Consensus 150 ~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 228 (395)
|.....++|.+.....|..++..++. +.+.++|+.|+||||+|+.+.+........+. ..+........|..
T Consensus 12 P~~f~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~-------~~c~~c~~c~~i~~ 84 (576)
T PRK14965 12 PQTFSDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTA-------EPCNVCPPCVEITE 84 (576)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCC-------CCCCccHHHHHHhc
Confidence 44566788999888889998887665 45689999999999999999887543211100 00000011111111
Q ss_pred HhCCCc---c--ccchhhhHHHHHHHHh----cCCeEEEEEeCCCCcc--ccchhccccCCCCCCcEEEE-eecchhhhh
Q 047930 229 KLGLTL---H--EETESGRARSLCNRLK----KEKRILVILDNIWENL--DFQAVGIPHGDGHKGSKVLL-TARSLDVLS 296 (395)
Q Consensus 229 ~l~~~~---~--~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iiv-TtR~~~va~ 296 (395)
.-..+. + .....+.+..+.+.+. .+++-++|||++.... ..+.+...+-....++.+|+ ||....+..
T Consensus 85 g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~ 164 (576)
T PRK14965 85 GRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPI 164 (576)
T ss_pred CCCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhH
Confidence 000000 0 0001112233333332 2445689999996543 34555544433334555555 444455543
Q ss_pred hcCCCcceeecCCCChHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchH-HHHHH
Q 047930 297 RKMDSQQNFSFDVLKEDEAWSLFKKMAGDYIEGSEFKWVAREVAKECAGLPV-SIVTV 353 (395)
Q Consensus 297 ~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPl-ai~~i 353 (395)
.....+..+++.+++.++....+...+......-+ .+....|++.++|..- ++..+
T Consensus 165 tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~i~-~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 165 TILSRCQRFDFRRIPLQKIVDRLRYIADQEGISIS-DAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred HHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHcCCCHHHHHHHH
Confidence 34455678999999999998888876643222111 2356788888888664 44444
No 85
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.47 E-value=8.5e-06 Score=82.11 Aligned_cols=196 Identities=15% Similarity=0.111 Sum_probs=111.7
Q ss_pred ccccchhchHHHHHHHHHHhcCCC-ceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHHHH
Q 047930 151 KDYEAFESRMSTLNDILDALKNPD-VNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFADK 229 (395)
Q Consensus 151 ~~~~~~~gr~~~~~~l~~~l~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 229 (395)
.....++|.+.....|..++..++ .+.+.++|+.|+||||+|+.++........... . ..........+.+...
T Consensus 13 ~~f~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~-~----~~~Cg~C~~C~~i~~g 87 (620)
T PRK14948 13 QRFDELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKP-T----PEPCGKCELCRAIAAG 87 (620)
T ss_pred CcHhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCC-C----CCCCcccHHHHHHhcC
Confidence 445667898888888888887654 367789999999999999999987643211100 0 0011112222223222
Q ss_pred hCCCcc-----ccchhhhHHHHHHHHh----cCCeEEEEEeCCCCc--cccchhccccCCCCCCcEEEEeecc-hhhhhh
Q 047930 230 LGLTLH-----EETESGRARSLCNRLK----KEKRILVILDNIWEN--LDFQAVGIPHGDGHKGSKVLLTARS-LDVLSR 297 (395)
Q Consensus 230 l~~~~~-----~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR~-~~va~~ 297 (395)
...... .....+.+..+.+.+. .+++-++|||++... ..++.+...+......+.+|++|.+ ..+...
T Consensus 88 ~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpT 167 (620)
T PRK14948 88 NALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPT 167 (620)
T ss_pred CCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHH
Confidence 111100 0011112233333322 145568999999754 3455555555333344555555543 333333
Q ss_pred cCCCcceeecCCCChHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHHHHH
Q 047930 298 KMDSQQNFSFDVLKEDEAWSLFKKMAGDYIEGSEFKWVAREVAKECAGLPVSIVT 352 (395)
Q Consensus 298 ~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~ 352 (395)
.......+++.+++.++....+...+......-+ .+....|++.++|.+..+..
T Consensus 168 IrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~is-~~al~~La~~s~G~lr~A~~ 221 (620)
T PRK14948 168 IISRCQRFDFRRIPLEAMVQHLSEIAEKESIEIE-PEALTLVAQRSQGGLRDAES 221 (620)
T ss_pred HHhheeEEEecCCCHHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHcCCCHHHHHH
Confidence 3445678899999999988888876643221111 23577899999998764443
No 86
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=98.45 E-value=1.1e-05 Score=80.71 Aligned_cols=194 Identities=16% Similarity=0.149 Sum_probs=110.5
Q ss_pred cccccchhchHHHHHHHHHHhcCCCc-eEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHHH
Q 047930 150 NKDYEAFESRMSTLNDILDALKNPDV-NMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFAD 228 (395)
Q Consensus 150 ~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 228 (395)
|.....++|.+.....|.+++..++. +.+.++|+.|+||||+|+.+..........+ ..+++.....+.|..
T Consensus 12 P~~f~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~-------~~pC~~C~~C~~i~~ 84 (559)
T PRK05563 12 PQTFEDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPD-------GEPCNECEICKAITN 84 (559)
T ss_pred CCcHHhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCC-------CCCCCccHHHHHHhc
Confidence 45567789999999999998876554 4567899999999999999987643221100 001111111122211
Q ss_pred HhCCCccc-----cchhhhHHHHHHHHh----cCCeEEEEEeCCCCc--cccchhccccCCCCCCcEEEE-eecchhhhh
Q 047930 229 KLGLTLHE-----ETESGRARSLCNRLK----KEKRILVILDNIWEN--LDFQAVGIPHGDGHKGSKVLL-TARSLDVLS 296 (395)
Q Consensus 229 ~l~~~~~~-----~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iiv-TtR~~~va~ 296 (395)
....+... ....+.+..+.+.+. .++.-++|||++... ..+..+...+.....+..+|+ ||....+..
T Consensus 85 g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~ 164 (559)
T PRK05563 85 GSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPA 164 (559)
T ss_pred CCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcH
Confidence 11100000 011122333333332 255678899999754 345555544433333444454 444444433
Q ss_pred hcCCCcceeecCCCChHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHHHH
Q 047930 297 RKMDSQQNFSFDVLKEDEAWSLFKKMAGDYIEGSEFKWVAREVAKECAGLPVSIV 351 (395)
Q Consensus 297 ~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~ 351 (395)
........+++.+++.++....+...+......-+ .+....|++.++|.+..+.
T Consensus 165 tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i~-~~al~~ia~~s~G~~R~al 218 (559)
T PRK05563 165 TILSRCQRFDFKRISVEDIVERLKYILDKEGIEYE-DEALRLIARAAEGGMRDAL 218 (559)
T ss_pred HHHhHheEEecCCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCCHHHHH
Confidence 33445668899999999999999887743222112 2356788888888776443
No 87
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=98.43 E-value=2.1e-06 Score=73.39 Aligned_cols=106 Identities=18% Similarity=0.130 Sum_probs=72.0
Q ss_pred ccccccccchhchHHHHHHHHHHhcCCCceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHH
Q 047930 147 LLSNKDYEAFESRMSTLNDILDALKNPDVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEF 226 (395)
Q Consensus 147 ~~~~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 226 (395)
...|....+++|.++.++.+.-...+++.+.+.|.||+|+||||-+..+++..-....-+.+.-.+.|+...+.-+-..|
T Consensus 20 KYrP~~l~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeRGIDvVRn~I 99 (333)
T KOG0991|consen 20 KYRPSVLQDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDERGIDVVRNKI 99 (333)
T ss_pred hhCchHHHHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCccccccHHHHHHH
Confidence 33455567789999888887777778889999999999999999999998886654444566667777665554433333
Q ss_pred HHHhCCCccccchhhhHHHHHHHHhcCCeEEEEEeCCCCc
Q 047930 227 ADKLGLTLHEETESGRARSLCNRLKKEKRILVILDNIWEN 266 (395)
Q Consensus 227 ~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~ 266 (395)
-.-.... -.+-.++.-++|||+.++.
T Consensus 100 K~FAQ~k--------------v~lp~grhKIiILDEADSM 125 (333)
T KOG0991|consen 100 KMFAQKK--------------VTLPPGRHKIIILDEADSM 125 (333)
T ss_pred HHHHHhh--------------ccCCCCceeEEEeeccchh
Confidence 2111000 0011256678999999876
No 88
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.42 E-value=1.7e-06 Score=89.49 Aligned_cols=160 Identities=15% Similarity=0.182 Sum_probs=93.3
Q ss_pred ccccchhchHHHHHHHHHHhcCCCceEEEEEecCCCcHHHHHHHHHHHhcccC---CC-CEEEEEEeCCcCCHHHHHHHH
Q 047930 151 KDYEAFESRMSTLNDILDALKNPDVNMLGIYGMGGIGKTTLAKEVARKAENEK---LF-DQVIFVEVSQIQDIRKIQGEF 226 (395)
Q Consensus 151 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~---~f-~~~~wv~~s~~~~~~~~~~~i 226 (395)
....+++||+.+++.++..|.......+.++|++|+|||++|+.+++...... .+ +..+|. + +...+..
T Consensus 179 ~~l~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~-~----~~~~l~a-- 251 (731)
T TIGR02639 179 GKIDPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYS-L----DMGSLLA-- 251 (731)
T ss_pred CCCCcccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEE-e----cHHHHhh--
Confidence 34567899999999999988876666788999999999999999998753321 11 333442 1 1111110
Q ss_pred HHHhCCCccccchhhhHHHHHHHHhcCCeEEEEEeCCCCcc----------ccchhccccCCCCCCcEEEEeecchhh--
Q 047930 227 ADKLGLTLHEETESGRARSLCNRLKKEKRILVILDNIWENL----------DFQAVGIPHGDGHKGSKVLLTARSLDV-- 294 (395)
Q Consensus 227 ~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~----------~~~~l~~~l~~~~~gs~iivTtR~~~v-- 294 (395)
... ........+..+.+.+...++.+|+||++.... +...+..+....+ .-++|-+|.....
T Consensus 252 --~~~---~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~g-~i~~IgaTt~~e~~~ 325 (731)
T TIGR02639 252 --GTK---YRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSSG-KLRCIGSTTYEEYKN 325 (731)
T ss_pred --hcc---ccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhCC-CeEEEEecCHHHHHH
Confidence 000 001122344555555544568999999986331 1112222221222 2344444443111
Q ss_pred ----hhhcCCCcceeecCCCChHHHHHHHHHhh
Q 047930 295 ----LSRKMDSQQNFSFDVLKEDEAWSLFKKMA 323 (395)
Q Consensus 295 ----a~~~~~~~~~~~l~~L~~~e~~~lf~~~~ 323 (395)
-.........+++++++.++..+++....
T Consensus 326 ~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 326 HFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred HhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 01112234579999999999999998655
No 89
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=98.41 E-value=1.5e-05 Score=79.41 Aligned_cols=196 Identities=14% Similarity=0.158 Sum_probs=111.3
Q ss_pred cccccchhchHHHHHHHHHHhcCCCc-eEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHHH
Q 047930 150 NKDYEAFESRMSTLNDILDALKNPDV-NMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFAD 228 (395)
Q Consensus 150 ~~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 228 (395)
|.....++|.+..+..|..++..++. +.+.++|+.|+||||+|+.+++.......... ..+.... ..+.|..
T Consensus 12 P~~f~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~---~pC~~C~----~C~~i~~ 84 (563)
T PRK06647 12 PRDFNSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTP---MPCGECS----SCKSIDN 84 (563)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCC---CCCccch----HHHHHHc
Confidence 34556788999989999998886654 45789999999999999999887542211100 0000000 0011111
Q ss_pred HhCCC---ccc--cchhhhHHHHHHHHh----cCCeEEEEEeCCCCcc--ccchhccccCCCCCCcEEEEeecc-hhhhh
Q 047930 229 KLGLT---LHE--ETESGRARSLCNRLK----KEKRILVILDNIWENL--DFQAVGIPHGDGHKGSKVLLTARS-LDVLS 296 (395)
Q Consensus 229 ~l~~~---~~~--~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iivTtR~-~~va~ 296 (395)
.-... .+. ....+.+..+.+.+. .+++-++|+|++.... .++.+...+......+.+|.+|.+ ..+..
T Consensus 85 ~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~ 164 (563)
T PRK06647 85 DNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPA 164 (563)
T ss_pred CCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHH
Confidence 00000 000 011112222322221 2456689999996543 455565555444445666655543 33433
Q ss_pred hcCCCcceeecCCCChHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHHHHHH
Q 047930 297 RKMDSQQNFSFDVLKEDEAWSLFKKMAGDYIEGSEFKWVAREVAKECAGLPVSIVTV 353 (395)
Q Consensus 297 ~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~i 353 (395)
........+++.+++.++....+.+.+......- -.+.+..|++.++|.+-.+...
T Consensus 165 tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi~i-d~eAl~lLa~~s~GdlR~alsl 220 (563)
T PRK06647 165 TIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIKY-EDEALKWIAYKSTGSVRDAYTL 220 (563)
T ss_pred HHHHhceEEEecCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHHH
Confidence 2334556799999999999999988774322221 1235778899999988644433
No 90
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.41 E-value=4.4e-06 Score=87.61 Aligned_cols=158 Identities=14% Similarity=0.210 Sum_probs=92.5
Q ss_pred ccchhchHHHHHHHHHHhcCCCceEEEEEecCCCcHHHHHHHHHHHhcccCC---C-CEEEEEEeCCcCCHHHHHHHHHH
Q 047930 153 YEAFESRMSTLNDILDALKNPDVNMLGIYGMGGIGKTTLAKEVARKAENEKL---F-DQVIFVEVSQIQDIRKIQGEFAD 228 (395)
Q Consensus 153 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~---f-~~~~wv~~s~~~~~~~~~~~i~~ 228 (395)
..+++||+++++.+++.|.......+.++|++|+|||++|+.++........ . +..+|. + +...++ .
T Consensus 178 ~~~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~-l----~~~~l~----a 248 (821)
T CHL00095 178 LDPVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT-L----DIGLLL----A 248 (821)
T ss_pred CCCCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-e----eHHHHh----c
Confidence 4568999999999999998766667789999999999999999887542111 1 234442 1 111111 0
Q ss_pred HhCCCccccchhhhHHHHHHHHhcCCeEEEEEeCCCCcc---------ccchhccccCCCCCCcEEEEeecchhhh----
Q 047930 229 KLGLTLHEETESGRARSLCNRLKKEKRILVILDNIWENL---------DFQAVGIPHGDGHKGSKVLLTARSLDVL---- 295 (395)
Q Consensus 229 ~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~---------~~~~l~~~l~~~~~gs~iivTtR~~~va---- 295 (395)
+.. ........+..+.+.+...++.+|+||++.... +...+..+....+ .-++|.+|......
T Consensus 249 --g~~-~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg-~l~~IgaTt~~ey~~~ie 324 (821)
T CHL00095 249 --GTK-YRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALARG-ELQCIGATTLDEYRKHIE 324 (821)
T ss_pred --cCC-CccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCC-CcEEEEeCCHHHHHHHHh
Confidence 111 111122345556666554568999999995321 1122222221222 23445544433221
Q ss_pred --hhcCCCcceeecCCCChHHHHHHHHHhh
Q 047930 296 --SRKMDSQQNFSFDVLKEDEAWSLFKKMA 323 (395)
Q Consensus 296 --~~~~~~~~~~~l~~L~~~e~~~lf~~~~ 323 (395)
.........+.+...+.++...+++...
T Consensus 325 ~D~aL~rRf~~I~v~ep~~~e~~aILr~l~ 354 (821)
T CHL00095 325 KDPALERRFQPVYVGEPSVEETIEILFGLR 354 (821)
T ss_pred cCHHHHhcceEEecCCCCHHHHHHHHHHHH
Confidence 1122344578899999999988887543
No 91
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.40 E-value=4.4e-06 Score=75.66 Aligned_cols=135 Identities=16% Similarity=0.236 Sum_probs=70.1
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCccccchhhhHHHHHHHHhcC
Q 047930 174 DVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFADKLGLTLHEETESGRARSLCNRLKKE 253 (395)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 253 (395)
....+.++|++|+||||+|+.+++............++.++.. ++.... ++ . .......+.+..
T Consensus 41 ~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~----~l~~~~---~g-----~-~~~~~~~~~~~a--- 104 (261)
T TIGR02881 41 QVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA----DLVGEY---IG-----H-TAQKTREVIKKA--- 104 (261)
T ss_pred CcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH----Hhhhhh---cc-----c-hHHHHHHHHHhc---
Confidence 4567889999999999999999876432111111123333221 111110 01 0 011112222222
Q ss_pred CeEEEEEeCCCCcc----------ccchhccccCCCCCCcEEEEeecchhhh------hhcCCC-cceeecCCCChHHHH
Q 047930 254 KRILVILDNIWENL----------DFQAVGIPHGDGHKGSKVLLTARSLDVL------SRKMDS-QQNFSFDVLKEDEAW 316 (395)
Q Consensus 254 kr~LlVlDdv~~~~----------~~~~l~~~l~~~~~gs~iivTtR~~~va------~~~~~~-~~~~~l~~L~~~e~~ 316 (395)
...+|+||++.... ....+...+........+|+++...... ...... ...+++++++.++..
T Consensus 105 ~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~ 184 (261)
T TIGR02881 105 LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELM 184 (261)
T ss_pred cCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchhHHHHhcChHHHhccceEEEECCCCHHHHH
Confidence 23589999996521 2223333332333334555555432210 011122 356899999999999
Q ss_pred HHHHHhhC
Q 047930 317 SLFKKMAG 324 (395)
Q Consensus 317 ~lf~~~~~ 324 (395)
+++.+.+.
T Consensus 185 ~Il~~~~~ 192 (261)
T TIGR02881 185 EIAERMVK 192 (261)
T ss_pred HHHHHHHH
Confidence 99998874
No 92
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.40 E-value=1.6e-06 Score=81.26 Aligned_cols=90 Identities=16% Similarity=0.171 Sum_probs=61.9
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCc--CCHHHHHHHHHHHhCCC-ccccch--hhhHH----H
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQI--QDIRKIQGEFADKLGLT-LHEETE--SGRAR----S 245 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~--~~~~~~~~~i~~~l~~~-~~~~~~--~~~~~----~ 245 (395)
-..++|+|++|+|||||++.+++....+ +|+..+|+.+.+. .++.++++.+...+-.. .+.... ..... .
T Consensus 168 Gq~~~IvG~~g~GKTtL~~~i~~~I~~n-hfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e~ 246 (415)
T TIGR00767 168 GQRGLIVAPPKAGKTVLLQKIAQAITRN-HPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIEK 246 (415)
T ss_pred CCEEEEECCCCCChhHHHHHHHHhhccc-CCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHHH
Confidence 3468899999999999999999987654 8999999999865 68899999985433111 111111 11111 2
Q ss_pred HHHHHhcCCeEEEEEeCCCC
Q 047930 246 LCNRLKKEKRILVILDNIWE 265 (395)
Q Consensus 246 l~~~l~~~kr~LlVlDdv~~ 265 (395)
......++++.+|++|++..
T Consensus 247 Ae~~~~~GkdVVLlIDEitR 266 (415)
T TIGR00767 247 AKRLVEHKKDVVILLDSITR 266 (415)
T ss_pred HHHHHHcCCCeEEEEEChhH
Confidence 22222358999999999954
No 93
>PRK05642 DNA replication initiation factor; Validated
Probab=98.39 E-value=9.9e-06 Score=72.00 Aligned_cols=154 Identities=14% Similarity=0.192 Sum_probs=92.6
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCccccchhhhHHHHHHHHhcCCe
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFADKLGLTLHEETESGRARSLCNRLKKEKR 255 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr 255 (395)
..+.|+|..|+|||.|++.+++....+ -..++|++... +... ...+.+.+.+ -
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~--~~~v~y~~~~~------~~~~-----------------~~~~~~~~~~-~- 98 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQR--GEPAVYLPLAE------LLDR-----------------GPELLDNLEQ-Y- 98 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhC--CCcEEEeeHHH------HHhh-----------------hHHHHHhhhh-C-
Confidence 568899999999999999998875432 23466776432 2111 1133444432 1
Q ss_pred EEEEEeCCCCc---cccch-hccccCC-CCCCcEEEEeecchhhh--------hhcCCCcceeecCCCChHHHHHHHHHh
Q 047930 256 ILVILDNIWEN---LDFQA-VGIPHGD-GHKGSKVLLTARSLDVL--------SRKMDSQQNFSFDVLKEDEAWSLFKKM 322 (395)
Q Consensus 256 ~LlVlDdv~~~---~~~~~-l~~~l~~-~~~gs~iivTtR~~~va--------~~~~~~~~~~~l~~L~~~e~~~lf~~~ 322 (395)
=+|++||+... ..|.. +...+.. ...|..+|+|++...-. .........+++.+++.++-..+++.+
T Consensus 99 d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~k 178 (234)
T PRK05642 99 ELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLR 178 (234)
T ss_pred CEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHH
Confidence 27889999633 34543 3333211 22466788888753221 011223467899999999999999966
Q ss_pred hCCCCCCCchHHHHHHHHHHcCCchHHHHHHHHHh
Q 047930 323 AGDYIEGSEFKWVAREVAKECAGLPVSIVTVARAL 357 (395)
Q Consensus 323 ~~~~~~~~~~~~~~~~i~~~c~GlPlai~~i~~~l 357 (395)
+...... --.++.+-|++.+.|..-.+..+-..|
T Consensus 179 a~~~~~~-l~~ev~~~L~~~~~~d~r~l~~~l~~l 212 (234)
T PRK05642 179 ASRRGLH-LTDEVGHFILTRGTRSMSALFDLLERL 212 (234)
T ss_pred HHHcCCC-CCHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 6322111 113578889999988866665544333
No 94
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.37 E-value=6.6e-06 Score=80.04 Aligned_cols=184 Identities=15% Similarity=0.099 Sum_probs=112.0
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCccccchhhhHHHHHHHHhcCCe
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFADKLGLTLHEETESGRARSLCNRLKKEKR 255 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr 255 (395)
.-+.|+|..|+|||.|++.+++.......-..+++++ ..++...+...+.... .....+.+.+. +.
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~------~~~f~~~~~~~l~~~~------~~~~~~~~~~~--~~ 207 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMS------GDEFARKAVDILQKTH------KEIEQFKNEIC--QN 207 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE------HHHHHHHHHHHHHHhh------hHHHHHHHHhc--cC
Confidence 4588999999999999999998654322223345554 3456677766654210 12334444443 34
Q ss_pred EEEEEeCCCCcc---ccc-hhccccCC-CCCCcEEEEeecchhh-h-------hhcCCCcceeecCCCChHHHHHHHHHh
Q 047930 256 ILVILDNIWENL---DFQ-AVGIPHGD-GHKGSKVLLTARSLDV-L-------SRKMDSQQNFSFDVLKEDEAWSLFKKM 322 (395)
Q Consensus 256 ~LlVlDdv~~~~---~~~-~l~~~l~~-~~~gs~iivTtR~~~v-a-------~~~~~~~~~~~l~~L~~~e~~~lf~~~ 322 (395)
-+|||||+.... .+. .+...+.. ...|..||+|+....- . ...+...-.+.+++++.++-..++.+.
T Consensus 208 dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~ 287 (450)
T PRK14087 208 DVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKE 287 (450)
T ss_pred CEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHHH
Confidence 589999996432 222 22222211 1234468888664211 0 112234567889999999999999998
Q ss_pred hCCCCC-CCchHHHHHHHHHHcCCchHHHHHHHHHh------h--CC--CHHHHHHHHHHhc
Q 047930 323 AGDYIE-GSEFKWVAREVAKECAGLPVSIVTVARAL------R--NK--RLFEWKDALEQLR 373 (395)
Q Consensus 323 ~~~~~~-~~~~~~~~~~i~~~c~GlPlai~~i~~~l------~--~~--~~~~w~~~l~~l~ 373 (395)
+..... ..--.++..-|++.++|.|-.+.-+..-+ . ++ +.+.-+.+++.+.
T Consensus 288 ~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL~~l~~~a~~~~~~~~it~~~v~~~l~~~~ 349 (450)
T PRK14087 288 IKNQNIKQEVTEEAINFISNYYSDDVRKIKGSVSRLNFWSQQNPEEKIITIEIVSDLFRDIP 349 (450)
T ss_pred HHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHhhcc
Confidence 853221 12234678999999999998776654333 2 12 5667777777653
No 95
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.35 E-value=6e-06 Score=72.54 Aligned_cols=163 Identities=20% Similarity=0.196 Sum_probs=96.2
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCccccchhhhHHHHHHHHhcCC
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFADKLGLTLHEETESGRARSLCNRLKKEK 254 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 254 (395)
...+.|+|..|+|||.|.+.+++.......-..++|++ ..++...+...+.. .....+.+.+. .
T Consensus 34 ~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~------~~~f~~~~~~~~~~--------~~~~~~~~~~~--~ 97 (219)
T PF00308_consen 34 YNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS------AEEFIREFADALRD--------GEIEEFKDRLR--S 97 (219)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE------HHHHHHHHHHHHHT--------TSHHHHHHHHC--T
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec------HHHHHHHHHHHHHc--------ccchhhhhhhh--c
Confidence 34588999999999999999999865432222356664 45566666655532 12345556665 3
Q ss_pred eEEEEEeCCCCcc---ccch-hccccC-CCCCCcEEEEeecchhhh--------hhcCCCcceeecCCCChHHHHHHHHH
Q 047930 255 RILVILDNIWENL---DFQA-VGIPHG-DGHKGSKVLLTARSLDVL--------SRKMDSQQNFSFDVLKEDEAWSLFKK 321 (395)
Q Consensus 255 r~LlVlDdv~~~~---~~~~-l~~~l~-~~~~gs~iivTtR~~~va--------~~~~~~~~~~~l~~L~~~e~~~lf~~ 321 (395)
-=+|+|||++... .|+. +...+. ....|.++|+|+....-. ...+...-.+++.+++.++...++.+
T Consensus 98 ~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~ 177 (219)
T PF00308_consen 98 ADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQK 177 (219)
T ss_dssp SSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHH
T ss_pred CCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHHH
Confidence 4589999997542 2332 221111 012466899999653211 11223456899999999999999999
Q ss_pred hhCCCCCCCchHHHHHHHHHHcCCchHHHHHHH
Q 047930 322 MAGDYIEGSEFKWVAREVAKECAGLPVSIVTVA 354 (395)
Q Consensus 322 ~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~i~ 354 (395)
.+...... --+++++-|++.+.+..-.+..+-
T Consensus 178 ~a~~~~~~-l~~~v~~~l~~~~~~~~r~L~~~l 209 (219)
T PF00308_consen 178 KAKERGIE-LPEEVIEYLARRFRRDVRELEGAL 209 (219)
T ss_dssp HHHHTT---S-HHHHHHHHHHTTSSHHHHHHHH
T ss_pred HHHHhCCC-CcHHHHHHHHHhhcCCHHHHHHHH
Confidence 88432221 223467778888877665554443
No 96
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.32 E-value=1.8e-05 Score=75.92 Aligned_cols=135 Identities=20% Similarity=0.194 Sum_probs=85.3
Q ss_pred hHHHHHHHHHHhcCCCceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCccccc
Q 047930 159 RMSTLNDILDALKNPDVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFADKLGLTLHEET 238 (395)
Q Consensus 159 r~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~ 238 (395)
|..-+.+++..+..... ++.|.|+.++||||+++.+....... .++++.-+......-+.+
T Consensus 22 ~~~~~~~l~~~~~~~~~-i~~i~GpR~~GKTtll~~l~~~~~~~-----~iy~~~~d~~~~~~~l~d------------- 82 (398)
T COG1373 22 RRKLLPRLIKKLDLRPF-IILILGPRQVGKTTLLKLLIKGLLEE-----IIYINFDDLRLDRIELLD------------- 82 (398)
T ss_pred HHhhhHHHHhhcccCCc-EEEEECCccccHHHHHHHHHhhCCcc-----eEEEEecchhcchhhHHH-------------
Confidence 33445556665543333 99999999999999996666554322 455544322111110011
Q ss_pred hhhhHHHHHHHHhcCCeEEEEEeCCCCccccchhccccCCCCCCcEEEEeecchhhh-----hhcCCCcceeecCCCChH
Q 047930 239 ESGRARSLCNRLKKEKRILVILDNIWENLDFQAVGIPHGDGHKGSKVLLTARSLDVL-----SRKMDSQQNFSFDVLKED 313 (395)
Q Consensus 239 ~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iivTtR~~~va-----~~~~~~~~~~~l~~L~~~ 313 (395)
....+.+.-. .++..++||.|.....|......+.+..+. +|++|+-+.... ....+....+++.|||-.
T Consensus 83 ---~~~~~~~~~~-~~~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~ 157 (398)
T COG1373 83 ---LLRAYIELKE-REKSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFR 157 (398)
T ss_pred ---HHHHHHHhhc-cCCceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHH
Confidence 1111111111 267899999999999999876777666666 899988875443 223456678999999999
Q ss_pred HHHH
Q 047930 314 EAWS 317 (395)
Q Consensus 314 e~~~ 317 (395)
|-..
T Consensus 158 Efl~ 161 (398)
T COG1373 158 EFLK 161 (398)
T ss_pred HHHh
Confidence 9865
No 97
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.31 E-value=3.8e-05 Score=71.17 Aligned_cols=196 Identities=15% Similarity=0.159 Sum_probs=112.5
Q ss_pred cchhchHHHHHHHHHHhcCCC-ceEEEEEecCCCcHHHHHHHHHHHhccc--------------CCCCEEEEEEeCCcCC
Q 047930 154 EAFESRMSTLNDILDALKNPD-VNMLGIYGMGGIGKTTLAKEVARKAENE--------------KLFDQVIFVEVSQIQD 218 (395)
Q Consensus 154 ~~~~gr~~~~~~l~~~l~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~--------------~~f~~~~wv~~s~~~~ 218 (395)
..++|.+...+.+...+..++ .+...++|+.|+||+++|..+.+..-.. .|.| ..|+.-.....
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPD-l~~i~p~~~~~ 82 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPD-LLWVEPTYQHQ 82 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCC-EEEEecccccc
Confidence 457898888888988887766 4789999999999999999988764322 1222 23332110000
Q ss_pred HHHHHHHHHHHhCC--CccccchhhhHHHHHHHHh----cCCeEEEEEeCCCCc--cccchhccccCCCCCCcEEEEeec
Q 047930 219 IRKIQGEFADKLGL--TLHEETESGRARSLCNRLK----KEKRILVILDNIWEN--LDFQAVGIPHGDGHKGSKVLLTAR 290 (395)
Q Consensus 219 ~~~~~~~i~~~l~~--~~~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR 290 (395)
-..+-...+...+. .....-..+.+..+.+.+. .+++-++|+|++... ...+.+...+-...+..-|++|+.
T Consensus 83 g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp~~~fILi~~~ 162 (314)
T PRK07399 83 GKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPGNGTLILIAPS 162 (314)
T ss_pred ccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCCCCeEEEEECC
Confidence 00000011111110 0000111123445555553 256779999998654 344445444422223333444444
Q ss_pred chhhhhhcCCCcceeecCCCChHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHHHHHHH
Q 047930 291 SLDVLSRKMDSQQNFSFDVLKEDEAWSLFKKMAGDYIEGSEFKWVAREVAKECAGLPVSIVTVA 354 (395)
Q Consensus 291 ~~~va~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~i~ 354 (395)
...+.....+.+..+++.++++++..+.+.+......... ....++..++|.|..+..+.
T Consensus 163 ~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~~~~----~~~~l~~~a~Gs~~~al~~l 222 (314)
T PRK07399 163 PESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEILNI----NFPELLALAQGSPGAAIANI 222 (314)
T ss_pred hHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhccccchh----HHHHHHHHcCCCHHHHHHHH
Confidence 4455454556778999999999999999998753211111 13578999999997665443
No 98
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=98.31 E-value=2.1e-05 Score=72.00 Aligned_cols=132 Identities=17% Similarity=0.183 Sum_probs=71.6
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCccccchhhhHHHHHHHHhcCCeE
Q 047930 177 MLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFADKLGLTLHEETESGRARSLCNRLKKEKRI 256 (395)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~ 256 (395)
.+.++|++|+|||++|+.++...........--|+.++. .++...+ .+.. . .....+.+.. ..-
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~----~~l~~~~---~g~~-----~-~~~~~~~~~a---~~g 123 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR----DDLVGQY---IGHT-----A-PKTKEILKRA---MGG 123 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH----HHHhHhh---cccc-----h-HHHHHHHHHc---cCc
Confidence 578999999999999988877654322221112444432 1222111 1111 1 1122233322 336
Q ss_pred EEEEeCCCCc-----------cccchhccccCCCCCCcEEEEeecchhhhh-hc------CCCcceeecCCCChHHHHHH
Q 047930 257 LVILDNIWEN-----------LDFQAVGIPHGDGHKGSKVLLTARSLDVLS-RK------MDSQQNFSFDVLKEDEAWSL 318 (395)
Q Consensus 257 LlVlDdv~~~-----------~~~~~l~~~l~~~~~gs~iivTtR~~~va~-~~------~~~~~~~~l~~L~~~e~~~l 318 (395)
+|+||++... ..+..+...+.....+.+||.++.....-. .. ......+++++++.+|...+
T Consensus 124 vL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I 203 (284)
T TIGR02880 124 VLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVI 203 (284)
T ss_pred EEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHH
Confidence 8999999632 112233333333344566777765432110 00 01235799999999999999
Q ss_pred HHHhhC
Q 047930 319 FKKMAG 324 (395)
Q Consensus 319 f~~~~~ 324 (395)
+...+.
T Consensus 204 ~~~~l~ 209 (284)
T TIGR02880 204 AGLMLK 209 (284)
T ss_pred HHHHHH
Confidence 998874
No 99
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.30 E-value=3.8e-05 Score=71.58 Aligned_cols=167 Identities=14% Similarity=0.078 Sum_probs=91.8
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCC-----cc---ccchhhhHHHH
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFADKLGLT-----LH---EETESGRARSL 246 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~-----~~---~~~~~~~~~~l 246 (395)
...+.++|+.|+||||+|..+....-....... .........+.+...-..+ .. .....+.+..+
T Consensus 22 ~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~-------~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR~l 94 (328)
T PRK05707 22 PHAYLLHGPAGIGKRALAERLAAALLCEAPQGG-------GACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVREL 94 (328)
T ss_pred ceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCC-------CCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHHHH
Confidence 456889999999999999999887543211100 0000000000110000000 00 00011223333
Q ss_pred HHHHh----cCCeEEEEEeCCCCc--cccchhccccCCCCCCcEEEEeecch-hhhhhcCCCcceeecCCCChHHHHHHH
Q 047930 247 CNRLK----KEKRILVILDNIWEN--LDFQAVGIPHGDGHKGSKVLLTARSL-DVLSRKMDSQQNFSFDVLKEDEAWSLF 319 (395)
Q Consensus 247 ~~~l~----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR~~-~va~~~~~~~~~~~l~~L~~~e~~~lf 319 (395)
.+.+. .+++-++|||+++.. ...+.+...+.....++.+|+||.+. .+.....+....+++.+++.+++.+.+
T Consensus 95 ~~~~~~~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L 174 (328)
T PRK05707 95 VSFVVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWL 174 (328)
T ss_pred HHHHhhccccCCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHH
Confidence 33332 134455678999764 34555555553333566777777764 444444566778999999999999999
Q ss_pred HHhhCCCCCCCchHHHHHHHHHHcCCchHHHHHH
Q 047930 320 KKMAGDYIEGSEFKWVAREVAKECAGLPVSIVTV 353 (395)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~i 353 (395)
...... .. .+.+..++..++|.|+....+
T Consensus 175 ~~~~~~-~~----~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 175 QQALPE-SD----ERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred HHhccc-CC----hHHHHHHHHHcCCCHHHHHHH
Confidence 876421 11 123567788999999855433
No 100
>CHL00181 cbbX CbbX; Provisional
Probab=98.30 E-value=2.5e-05 Score=71.42 Aligned_cols=133 Identities=14% Similarity=0.148 Sum_probs=72.5
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCccccchhhhHHHHHHHHhcCCe
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFADKLGLTLHEETESGRARSLCNRLKKEKR 255 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr 255 (395)
..+.++|++|+||||+|+.++........-...-|+.++. .++..... +.. . .....+.+.. ..
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~----~~l~~~~~---g~~-----~-~~~~~~l~~a---~g 123 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTR----DDLVGQYI---GHT-----A-PKTKEVLKKA---MG 123 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecH----HHHHHHHh---ccc-----h-HHHHHHHHHc---cC
Confidence 3578999999999999999987643222111112444431 22222211 110 0 1112222222 23
Q ss_pred EEEEEeCCCCc-----------cccchhccccCCCCCCcEEEEeecchhhhh-------hcCCCcceeecCCCChHHHHH
Q 047930 256 ILVILDNIWEN-----------LDFQAVGIPHGDGHKGSKVLLTARSLDVLS-------RKMDSQQNFSFDVLKEDEAWS 317 (395)
Q Consensus 256 ~LlVlDdv~~~-----------~~~~~l~~~l~~~~~gs~iivTtR~~~va~-------~~~~~~~~~~l~~L~~~e~~~ 317 (395)
-+|+||++... +....+...+.+...+.+||.++....+.. -.......+.+++++.+|..+
T Consensus 124 gVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~ 203 (287)
T CHL00181 124 GVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQ 203 (287)
T ss_pred CEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHH
Confidence 59999999642 111223333333444567777775433210 011224589999999999999
Q ss_pred HHHHhhC
Q 047930 318 LFKKMAG 324 (395)
Q Consensus 318 lf~~~~~ 324 (395)
++...+.
T Consensus 204 I~~~~l~ 210 (287)
T CHL00181 204 IAKIMLE 210 (287)
T ss_pred HHHHHHH
Confidence 9998874
No 101
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=98.30 E-value=1.6e-05 Score=75.93 Aligned_cols=199 Identities=17% Similarity=0.257 Sum_probs=108.4
Q ss_pred cccchhchHHHHHHHHHHhc----C---------CCceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCC
Q 047930 152 DYEAFESRMSTLNDILDALK----N---------PDVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQD 218 (395)
Q Consensus 152 ~~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~ 218 (395)
...++.|.+..++++.+.+. . ..++-+.++|++|+|||+||+.+++..... | +.+..
T Consensus 143 ~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~--f---i~i~~----- 212 (398)
T PTZ00454 143 TYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTAT--F---IRVVG----- 212 (398)
T ss_pred CHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCC--E---EEEeh-----
Confidence 34556677666666655432 1 235678899999999999999999875422 2 22211
Q ss_pred HHHHHHHHHHHhCCCccccchhhhHHHHHHHHhcCCeEEEEEeCCCCcc------------c----cchhccccC--CCC
Q 047930 219 IRKIQGEFADKLGLTLHEETESGRARSLCNRLKKEKRILVILDNIWENL------------D----FQAVGIPHG--DGH 280 (395)
Q Consensus 219 ~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~------------~----~~~l~~~l~--~~~ 280 (395)
..+.... ++ . ....+..+........+.+|+||+++... . +..+...+. ...
T Consensus 213 -s~l~~k~---~g-----e-~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~ 282 (398)
T PTZ00454 213 -SEFVQKY---LG-----E-GPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQT 282 (398)
T ss_pred -HHHHHHh---cc-----h-hHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCC
Confidence 1111111 11 0 11223344444444678999999986421 0 111111111 123
Q ss_pred CCcEEEEeecchhhh-hhcC---CCcceeecCCCChHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHH-HHHH--
Q 047930 281 KGSKVLLTARSLDVL-SRKM---DSQQNFSFDVLKEDEAWSLFKKMAGDYIEGSEFKWVAREVAKECAGLPVS-IVTV-- 353 (395)
Q Consensus 281 ~gs~iivTtR~~~va-~~~~---~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPla-i~~i-- 353 (395)
.+..||.||...... .... .-...+++...+.++...+|..........++.. ..++++.+.|+.-| |+.+
T Consensus 283 ~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd--~~~la~~t~g~sgaDI~~l~~ 360 (398)
T PTZ00454 283 TNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVD--LEDFVSRPEKISAADIAAICQ 360 (398)
T ss_pred CCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccC--HHHHHHHcCCCCHHHHHHHHH
Confidence 456788888754332 1111 2345789999999998888887764332222221 35677777776433 3332
Q ss_pred -HHHh--h-CC---CHHHHHHHHHHh
Q 047930 354 -ARAL--R-NK---RLFEWKDALEQL 372 (395)
Q Consensus 354 -~~~l--~-~~---~~~~w~~~l~~l 372 (395)
|++. + ++ +.+.+..+++..
T Consensus 361 eA~~~A~r~~~~~i~~~df~~A~~~v 386 (398)
T PTZ00454 361 EAGMQAVRKNRYVILPKDFEKGYKTV 386 (398)
T ss_pred HHHHHHHHcCCCccCHHHHHHHHHHH
Confidence 3332 2 21 566777776664
No 102
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=98.28 E-value=6.1e-05 Score=69.23 Aligned_cols=196 Identities=15% Similarity=0.169 Sum_probs=116.8
Q ss_pred cchhchHHHHHHHHHHhcCCC---ceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHHHHh
Q 047930 154 EAFESRMSTLNDILDALKNPD---VNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFADKL 230 (395)
Q Consensus 154 ~~~~gr~~~~~~l~~~l~~~~---~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l 230 (395)
+.|.+|+.++..+...+.+.. +..+.|.|-+|+|||.+.+++.+..... -+|+++-..++...++..|+...
T Consensus 6 ~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~-----~vw~n~~ecft~~~lle~IL~~~ 80 (438)
T KOG2543|consen 6 PNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNLE-----NVWLNCVECFTYAILLEKILNKS 80 (438)
T ss_pred cCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCCc-----ceeeehHHhccHHHHHHHHHHHh
Confidence 457789999999988877443 3445789999999999999999887322 58999999999999999999998
Q ss_pred CC-Cccccc-hh--hhHHHHHHHHh-------cCCeEEEEEeCCCCccccchhccc----c--CCCCCCcEEEEeecc--
Q 047930 231 GL-TLHEET-ES--GRARSLCNRLK-------KEKRILVILDNIWENLDFQAVGIP----H--GDGHKGSKVLLTARS-- 291 (395)
Q Consensus 231 ~~-~~~~~~-~~--~~~~~l~~~l~-------~~kr~LlVlDdv~~~~~~~~l~~~----l--~~~~~gs~iivTtR~-- 291 (395)
+. +.+... .. +........+. .++.++||||+++...+.+.+..+ + .-+.+.. +|+++-.
T Consensus 81 ~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i-~iils~~~~ 159 (438)
T KOG2543|consen 81 QLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTI-VIILSAPSC 159 (438)
T ss_pred ccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCce-EEEEecccc
Confidence 52 222111 11 11222222221 246899999999766544432110 0 0122233 3444332
Q ss_pred hhhhhhcCCC--cceeecCCCChHHHHHHHHHhhCCCCC----CCchHHHHHHHHHHcCCchHHHHHHHHH
Q 047930 292 LDVLSRKMDS--QQNFSFDVLKEDEAWSLFKKMAGDYIE----GSEFKWVAREVAKECAGLPVSIVTVARA 356 (395)
Q Consensus 292 ~~va~~~~~~--~~~~~l~~L~~~e~~~lf~~~~~~~~~----~~~~~~~~~~i~~~c~GlPlai~~i~~~ 356 (395)
+......++. ..++.++..+.+|...+|.+.-.+... ..-+.-+..-....|+ -|-.+..+...
T Consensus 160 e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~~p~~r~~~~ya~fl~v~l~vF~~~cr-d~~eL~~~~~~ 229 (438)
T KOG2543|consen 160 EKQYLINTGTLEIVVLHFPQYSVEETQVILSRDNPGKRKLDVYAQFLHVLLQVFYMACR-DVNELRSLISL 229 (438)
T ss_pred HHHhhcccCCCCceEEecCCCCHHHHHHHHhcCCccccchHHHHHHHHHHHHHHHHHhC-CHHHHHHHHHH
Confidence 2221111233 346778889999999988765432111 1112223344555666 56666555544
No 103
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=98.27 E-value=2.2e-05 Score=77.85 Aligned_cols=201 Identities=21% Similarity=0.266 Sum_probs=108.4
Q ss_pred ccccchhchHHHHHHH---HHHhcC---------CCceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCC
Q 047930 151 KDYEAFESRMSTLNDI---LDALKN---------PDVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQD 218 (395)
Q Consensus 151 ~~~~~~~gr~~~~~~l---~~~l~~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~ 218 (395)
....++.|-+...+++ +.++.. ...+-+.++|++|+|||+||+.+++..... ++.++.
T Consensus 52 ~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~-------~~~i~~--- 121 (495)
T TIGR01241 52 VTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVP-------FFSISG--- 121 (495)
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCC-------eeeccH---
Confidence 3445666766554443 333321 224568899999999999999999875432 222221
Q ss_pred HHHHHHHHHHHhCCCccccchhhhHHHHHHHHhcCCeEEEEEeCCCCcc------------ccc----hhccccC--CCC
Q 047930 219 IRKIQGEFADKLGLTLHEETESGRARSLCNRLKKEKRILVILDNIWENL------------DFQ----AVGIPHG--DGH 280 (395)
Q Consensus 219 ~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~------------~~~----~l~~~l~--~~~ 280 (395)
.++.... .+. ....+..+.+......+.+|+|||++... .+. .+...+. ...
T Consensus 122 -~~~~~~~---~g~------~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~ 191 (495)
T TIGR01241 122 -SDFVEMF---VGV------GASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTN 191 (495)
T ss_pred -HHHHHHH---hcc------cHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCC
Confidence 1111111 010 11123344444444567999999996431 011 1111110 122
Q ss_pred CCcEEEEeecchhhh-hhc---CCCcceeecCCCChHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCc-hHHHHHHHH
Q 047930 281 KGSKVLLTARSLDVL-SRK---MDSQQNFSFDVLKEDEAWSLFKKMAGDYIEGSEFKWVAREVAKECAGL-PVSIVTVAR 355 (395)
Q Consensus 281 ~gs~iivTtR~~~va-~~~---~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~Gl-Plai~~i~~ 355 (395)
.+..||.||...... ... ..-...+++...+.++-.++|+..+......++. ....+++.+.|. |--|..+..
T Consensus 192 ~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~--~l~~la~~t~G~sgadl~~l~~ 269 (495)
T TIGR01241 192 TGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDV--DLKAVARRTPGFSGADLANLLN 269 (495)
T ss_pred CCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcch--hHHHHHHhCCCCCHHHHHHHHH
Confidence 345566666553321 111 1234578999999999999998887543222222 245788888884 444444432
Q ss_pred ---Hh--h-CC---CHHHHHHHHHHhc
Q 047930 356 ---AL--R-NK---RLFEWKDALEQLR 373 (395)
Q Consensus 356 ---~l--~-~~---~~~~w~~~l~~l~ 373 (395)
+. + ++ +.+..+.+++...
T Consensus 270 eA~~~a~~~~~~~i~~~~l~~a~~~~~ 296 (495)
T TIGR01241 270 EAALLAARKNKTEITMNDIEEAIDRVI 296 (495)
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHh
Confidence 11 2 22 6778888877654
No 104
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.26 E-value=5.3e-05 Score=73.23 Aligned_cols=181 Identities=18% Similarity=0.166 Sum_probs=107.1
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCccccchhhhHHHHHHHHhcCCe
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFADKLGLTLHEETESGRARSLCNRLKKEKR 255 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr 255 (395)
..+.|+|+.|+|||.|++.+++....+..-..++|++. .++...+...+... ....+.+.+.. .
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~------~~~~~~~~~~~~~~--------~~~~~~~~~~~--~ 200 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSS------EKFTNDFVNALRNN--------KMEEFKEKYRS--V 200 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEH------HHHHHHHHHHHHcC--------CHHHHHHHHHh--C
Confidence 45889999999999999999998754321123566643 34444555444321 12344444442 3
Q ss_pred EEEEEeCCCCccc---cc-hhccccCC-CCCCcEEEEeecchh--hh------hhcCCCcceeecCCCChHHHHHHHHHh
Q 047930 256 ILVILDNIWENLD---FQ-AVGIPHGD-GHKGSKVLLTARSLD--VL------SRKMDSQQNFSFDVLKEDEAWSLFKKM 322 (395)
Q Consensus 256 ~LlVlDdv~~~~~---~~-~l~~~l~~-~~~gs~iivTtR~~~--va------~~~~~~~~~~~l~~L~~~e~~~lf~~~ 322 (395)
-+|+|||+..... +. .+...+.. ...+..+|+|+.... +. ...+.....+.+.+.+.++-..++.+.
T Consensus 201 dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~ 280 (405)
T TIGR00362 201 DLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKK 280 (405)
T ss_pred CEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHH
Confidence 4899999975321 11 12221111 123456788776421 10 111233457999999999999999998
Q ss_pred hCCCCCCCchHHHHHHHHHHcCCchHHHH----HHHHHh--hC-C-CHHHHHHHHHHhc
Q 047930 323 AGDYIEGSEFKWVAREVAKECAGLPVSIV----TVARAL--RN-K-RLFEWKDALEQLR 373 (395)
Q Consensus 323 ~~~~~~~~~~~~~~~~i~~~c~GlPlai~----~i~~~l--~~-~-~~~~w~~~l~~l~ 373 (395)
+......- -.++...|++.+.|.+-.+. .+..+- .+ . +....+.++..+-
T Consensus 281 ~~~~~~~l-~~e~l~~ia~~~~~~~r~l~~~l~~l~~~a~~~~~~it~~~~~~~L~~~~ 338 (405)
T TIGR00362 281 AEEEGLEL-PDEVLEFIAKNIRSNVRELEGALNRLLAYASLTGKPITLELAKEALKDLL 338 (405)
T ss_pred HHHcCCCC-CHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhc
Confidence 85432211 24578889999998776433 332221 12 2 7788888888753
No 105
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=98.23 E-value=2.7e-05 Score=76.19 Aligned_cols=161 Identities=19% Similarity=0.259 Sum_probs=89.2
Q ss_pred cccchhchHHHHHHHHHHhc-------------CCCceEEEEEecCCCcHHHHHHHHHHHhcccCC---CCEEEEEEeCC
Q 047930 152 DYEAFESRMSTLNDILDALK-------------NPDVNMLGIYGMGGIGKTTLAKEVARKAENEKL---FDQVIFVEVSQ 215 (395)
Q Consensus 152 ~~~~~~gr~~~~~~l~~~l~-------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~---f~~~~wv~~s~ 215 (395)
.+.++.|.+..++++.+.+. -..++-+.++|++|+|||++|+.+++....... .....|+++..
T Consensus 180 ~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~ 259 (512)
T TIGR03689 180 TYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKG 259 (512)
T ss_pred CHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccc
Confidence 34556678887777766542 123456889999999999999999998653211 12344555443
Q ss_pred cCCHHHHHHHHHHHhCCCccccchhhhHHHHHHH----HhcCCeEEEEEeCCCCcc---------cc-----chhccccC
Q 047930 216 IQDIRKIQGEFADKLGLTLHEETESGRARSLCNR----LKKEKRILVILDNIWENL---------DF-----QAVGIPHG 277 (395)
Q Consensus 216 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~----l~~~kr~LlVlDdv~~~~---------~~-----~~l~~~l~ 277 (395)
.. ++.... + . ....+..+.+. ...+++++|+||+++... +. ..+...+.
T Consensus 260 ~e----Ll~kyv---G-----e-te~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LD 326 (512)
T TIGR03689 260 PE----LLNKYV---G-----E-TERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELD 326 (512)
T ss_pred hh----hccccc---c-----h-HHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhc
Confidence 21 111100 0 0 01112222222 223578999999997431 11 12222221
Q ss_pred --CCCCCcEEEEeecchhhh-hhcC---CCcceeecCCCChHHHHHHHHHhhCC
Q 047930 278 --DGHKGSKVLLTARSLDVL-SRKM---DSQQNFSFDVLKEDEAWSLFKKMAGD 325 (395)
Q Consensus 278 --~~~~gs~iivTtR~~~va-~~~~---~~~~~~~l~~L~~~e~~~lf~~~~~~ 325 (395)
....+..||.||...... .... .....|++++.+.++..++|+.++..
T Consensus 327 gl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~ 380 (512)
T TIGR03689 327 GVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTD 380 (512)
T ss_pred ccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhc
Confidence 112344556666544322 1111 22446999999999999999998753
No 106
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=98.20 E-value=0.0001 Score=64.50 Aligned_cols=100 Identities=16% Similarity=0.298 Sum_probs=62.5
Q ss_pred ccccchhchHHHHHHHHHH----hcCCCceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHH
Q 047930 151 KDYEAFESRMSTLNDILDA----LKNPDVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEF 226 (395)
Q Consensus 151 ~~~~~~~gr~~~~~~l~~~----l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 226 (395)
.....++|-+.+.+.|++. +.......+.++|..|+|||+|++.+.+....+. . --|.++..
T Consensus 24 ~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~G---L-RlIev~k~---------- 89 (249)
T PF05673_consen 24 IRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQG---L-RLIEVSKE---------- 89 (249)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhcC---c-eEEEECHH----------
Confidence 4456678877777766654 3355566788999999999999999998876543 1 11222211
Q ss_pred HHHhCCCccccchhhhHHHHHHHHh-cCCeEEEEEeCCC---Cccccchhcccc
Q 047930 227 ADKLGLTLHEETESGRARSLCNRLK-KEKRILVILDNIW---ENLDFQAVGIPH 276 (395)
Q Consensus 227 ~~~l~~~~~~~~~~~~~~~l~~~l~-~~kr~LlVlDdv~---~~~~~~~l~~~l 276 (395)
+...+..+.+.+. ...||+|++||+. +...+..++..+
T Consensus 90 ------------~L~~l~~l~~~l~~~~~kFIlf~DDLsFe~~d~~yk~LKs~L 131 (249)
T PF05673_consen 90 ------------DLGDLPELLDLLRDRPYKFILFCDDLSFEEGDTEYKALKSVL 131 (249)
T ss_pred ------------HhccHHHHHHHHhcCCCCEEEEecCCCCCCCcHHHHHHHHHh
Confidence 1112334444443 3579999999984 223455555444
No 107
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.18 E-value=2.9e-05 Score=81.80 Aligned_cols=158 Identities=13% Similarity=0.168 Sum_probs=90.9
Q ss_pred cccchhchHHHHHHHHHHhcCCCceEEEEEecCCCcHHHHHHHHHHHhcccCC----CCEEEE-EEeCCcCCHHHHHHHH
Q 047930 152 DYEAFESRMSTLNDILDALKNPDVNMLGIYGMGGIGKTTLAKEVARKAENEKL----FDQVIF-VEVSQIQDIRKIQGEF 226 (395)
Q Consensus 152 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~----f~~~~w-v~~s~~~~~~~~~~~i 226 (395)
...+++||+.++.+++..|.......+.++|++|+|||++|+.+......... ....+| +.+ ..+.
T Consensus 171 ~~~~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~------~~l~--- 241 (852)
T TIGR03346 171 KLDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDM------GALI--- 241 (852)
T ss_pred CCCcCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeH------HHHh---
Confidence 45678999999999999998766667789999999999999999887532211 122233 221 1111
Q ss_pred HHHhCCCccccchhhhHHHHHHHHh-cCCeEEEEEeCCCCccc---------cchhccccCCCCCCcEEEEeecchhh--
Q 047930 227 ADKLGLTLHEETESGRARSLCNRLK-KEKRILVILDNIWENLD---------FQAVGIPHGDGHKGSKVLLTARSLDV-- 294 (395)
Q Consensus 227 ~~~l~~~~~~~~~~~~~~~l~~~l~-~~kr~LlVlDdv~~~~~---------~~~l~~~l~~~~~gs~iivTtR~~~v-- 294 (395)
. +.. ........+..+.+.+. .+++.+|+||++..... ...+..+....+ .-++|-+|.....
T Consensus 242 -a--~~~-~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~g-~i~~IgaTt~~e~r~ 316 (852)
T TIGR03346 242 -A--GAK-YRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALARG-ELHCIGATTLDEYRK 316 (852)
T ss_pred -h--cch-hhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhcC-ceEEEEeCcHHHHHH
Confidence 0 000 00111223445555553 24689999999964321 112222322222 2344444443321
Q ss_pred ----hhhcCCCcceeecCCCChHHHHHHHHHhh
Q 047930 295 ----LSRKMDSQQNFSFDVLKEDEAWSLFKKMA 323 (395)
Q Consensus 295 ----a~~~~~~~~~~~l~~L~~~e~~~lf~~~~ 323 (395)
-.........+.+...+.++...++....
T Consensus 317 ~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 317 YIEKDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred HhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 01112234568899999999999987664
No 108
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.18 E-value=1.2e-05 Score=76.66 Aligned_cols=108 Identities=23% Similarity=0.321 Sum_probs=71.4
Q ss_pred cchhchHHHHHHHHHHhcCCCceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCC
Q 047930 154 EAFESRMSTLNDILDALKNPDVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFADKLGLT 233 (395)
Q Consensus 154 ~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~ 233 (395)
...+..+..++.++..|... +.|.++|++|+|||++|+.+++.......|+.+.|+++++..+..++..-+.-. +..
T Consensus 175 ~d~~i~e~~le~l~~~L~~~--~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~-~vg 251 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIK--KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPN-GVG 251 (459)
T ss_pred hcccCCHHHHHHHHHHHhcC--CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCC-CCC
Confidence 34566778888888888754 457889999999999999999987655568889999999988877655422100 000
Q ss_pred ccccchhhhHHHHHHHHh--cCCeEEEEEeCCCCc
Q 047930 234 LHEETESGRARSLCNRLK--KEKRILVILDNIWEN 266 (395)
Q Consensus 234 ~~~~~~~~~~~~l~~~l~--~~kr~LlVlDdv~~~ 266 (395)
. .-......++.+... .+++++||||++...
T Consensus 252 y--~~~~G~f~~~~~~A~~~p~~~~vliIDEINRa 284 (459)
T PRK11331 252 F--RRKDGIFYNFCQQAKEQPEKKYVFIIDEINRA 284 (459)
T ss_pred e--EecCchHHHHHHHHHhcccCCcEEEEehhhcc
Confidence 0 000112222223322 246899999999643
No 109
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=98.18 E-value=6.6e-05 Score=66.39 Aligned_cols=196 Identities=16% Similarity=0.151 Sum_probs=110.1
Q ss_pred cccccchhchHHHHHHHHHHhc-----CCCceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHH
Q 047930 150 NKDYEAFESRMSTLNDILDALK-----NPDVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQG 224 (395)
Q Consensus 150 ~~~~~~~~gr~~~~~~l~~~l~-----~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 224 (395)
|.....|+|.++..++|-=.+. +..+..+.++|++|.||||||.-+++...+. + -++...-..
T Consensus 22 P~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn--~----k~tsGp~le------ 89 (332)
T COG2255 22 PKTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVN--L----KITSGPALE------ 89 (332)
T ss_pred cccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCC--e----Eeccccccc------
Confidence 4556789998887777654443 4567889999999999999999999998764 1 111111100
Q ss_pred HHHHHhCCCccccchhhhHHHHHHHHhcCCeEEEEEeCCCCcc---------ccchhcccc-CCCCCCcE----------
Q 047930 225 EFADKLGLTLHEETESGRARSLCNRLKKEKRILVILDNIWENL---------DFQAVGIPH-GDGHKGSK---------- 284 (395)
Q Consensus 225 ~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~---------~~~~l~~~l-~~~~~gs~---------- 284 (395)
....+..+...|. ..=+|++|++.... ..+++.... ...++++|
T Consensus 90 --------------K~gDlaaiLt~Le--~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFT 153 (332)
T COG2255 90 --------------KPGDLAAILTNLE--EGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFT 153 (332)
T ss_pred --------------ChhhHHHHHhcCC--cCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCee
Confidence 0111222333332 23456667764321 111110000 01122222
Q ss_pred -EEEeecchhhhh-hcCCCcceeecCCCChHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHHHHHHHHHhhC---
Q 047930 285 -VLLTARSLDVLS-RKMDSQQNFSFDVLKEDEAWSLFKKMAGDYIEGSEFKWVAREVAKECAGLPVSIVTVARALRN--- 359 (395)
Q Consensus 285 -iivTtR~~~va~-~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~i~~~l~~--- 359 (395)
|=-|||.-.+.. ......-+.+++..+.+|..++..+.+..-...-+ .+-+.+|+++..|-|--..-+-.-.+.
T Consensus 154 LIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~-~~~a~eIA~rSRGTPRIAnRLLrRVRDfa~ 232 (332)
T COG2255 154 LIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIEID-EEAALEIARRSRGTPRIANRLLRRVRDFAQ 232 (332)
T ss_pred EeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCCCC-hHHHHHHHHhccCCcHHHHHHHHHHHHHHH
Confidence 345888643321 11123457889999999999999988842111111 235889999999999755544443331
Q ss_pred ---C---CHHHHHHHHHHhcC
Q 047930 360 ---K---RLFEWKDALEQLRR 374 (395)
Q Consensus 360 ---~---~~~~w~~~l~~l~~ 374 (395)
. +..--..+++.|.-
T Consensus 233 V~~~~~I~~~ia~~aL~~L~V 253 (332)
T COG2255 233 VKGDGDIDRDIADKALKMLDV 253 (332)
T ss_pred HhcCCcccHHHHHHHHHHhCc
Confidence 1 34445556666544
No 110
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.17 E-value=9.2e-06 Score=65.13 Aligned_cols=69 Identities=23% Similarity=0.278 Sum_probs=42.1
Q ss_pred EEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCccccchhhhHHHHHHHHhcCC-eE
Q 047930 178 LGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFADKLGLTLHEETESGRARSLCNRLKKEK-RI 256 (395)
Q Consensus 178 i~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k-r~ 256 (395)
|.|+|++|+||||+|+.+++.... ..+.++.+...+. ........+..+.+...... +.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~-----~~~~i~~~~~~~~---------------~~~~~~~~i~~~~~~~~~~~~~~ 60 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGF-----PFIEIDGSELISS---------------YAGDSEQKIRDFFKKAKKSAKPC 60 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTS-----EEEEEETTHHHTS---------------STTHHHHHHHHHHHHHHHTSTSE
T ss_pred CEEECcCCCCeeHHHHHHHhhccc-----ccccccccccccc---------------cccccccccccccccccccccce
Confidence 579999999999999999998742 1344544322100 01111223334444443333 89
Q ss_pred EEEEeCCCCc
Q 047930 257 LVILDNIWEN 266 (395)
Q Consensus 257 LlVlDdv~~~ 266 (395)
+|+|||++..
T Consensus 61 vl~iDe~d~l 70 (132)
T PF00004_consen 61 VLFIDEIDKL 70 (132)
T ss_dssp EEEEETGGGT
T ss_pred eeeeccchhc
Confidence 9999999654
No 111
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.16 E-value=1.7e-05 Score=83.27 Aligned_cols=159 Identities=13% Similarity=0.169 Sum_probs=90.1
Q ss_pred ccccchhchHHHHHHHHHHhcCCCceEEEEEecCCCcHHHHHHHHHHHhcccCC----CCE-EEEEEeCCcCCHHHHHHH
Q 047930 151 KDYEAFESRMSTLNDILDALKNPDVNMLGIYGMGGIGKTTLAKEVARKAENEKL----FDQ-VIFVEVSQIQDIRKIQGE 225 (395)
Q Consensus 151 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~----f~~-~~wv~~s~~~~~~~~~~~ 225 (395)
....+++||+.++..++..|.......+.++|++|+|||+||+.+......... ... ++++.++.- ..
T Consensus 175 ~~l~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l------~a- 247 (857)
T PRK10865 175 GKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGAL------VA- 247 (857)
T ss_pred CCCCcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhh------hh-
Confidence 345679999999999999998766667889999999999999999987642211 122 233322211 00
Q ss_pred HHHHhCCCccccchhhhHHHHHHHHh-cCCeEEEEEeCCCCcc---------ccchhccccCCCCCCcEEEEeecchhh-
Q 047930 226 FADKLGLTLHEETESGRARSLCNRLK-KEKRILVILDNIWENL---------DFQAVGIPHGDGHKGSKVLLTARSLDV- 294 (395)
Q Consensus 226 i~~~l~~~~~~~~~~~~~~~l~~~l~-~~kr~LlVlDdv~~~~---------~~~~l~~~l~~~~~gs~iivTtR~~~v- 294 (395)
+ ..........+..+.+.+. .+++.+|++|++.... +-..+..|....+ .-++|-+|.....
T Consensus 248 -----g-~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~g-~l~~IgaTt~~e~r 320 (857)
T PRK10865 248 -----G-AKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARG-ELHCVGATTLDEYR 320 (857)
T ss_pred -----c-cchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhhcC-CCeEEEcCCCHHHH
Confidence 0 0000111123344444442 2568999999996442 1122333332222 3345544443321
Q ss_pred -----hhhcCCCcceeecCCCChHHHHHHHHHhh
Q 047930 295 -----LSRKMDSQQNFSFDVLKEDEAWSLFKKMA 323 (395)
Q Consensus 295 -----a~~~~~~~~~~~l~~L~~~e~~~lf~~~~ 323 (395)
-.........+.+...+.++...+++...
T Consensus 321 ~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 321 QYIEKDAALERRFQKVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred HHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHh
Confidence 01112233456677778899998887654
No 112
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.16 E-value=8.2e-05 Score=72.90 Aligned_cols=181 Identities=18% Similarity=0.163 Sum_probs=107.6
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCccccchhhhHHHHHHHHhcCCe
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFADKLGLTLHEETESGRARSLCNRLKKEKR 255 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr 255 (395)
..+.|+|+.|+|||+|++.+++....+..-..++|++.. ++...+...+... ....+.+.+. +.
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~------~~~~~~~~~~~~~--------~~~~~~~~~~--~~ 212 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSE------KFTNDFVNALRNN--------TMEEFKEKYR--SV 212 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHH------HHHHHHHHHHHcC--------cHHHHHHHHh--cC
Confidence 458899999999999999999987643222335566543 3344444444211 1234444554 24
Q ss_pred EEEEEeCCCCcc---cc-chhccccCC-CCCCcEEEEeecchh--hh------hhcCCCcceeecCCCChHHHHHHHHHh
Q 047930 256 ILVILDNIWENL---DF-QAVGIPHGD-GHKGSKVLLTARSLD--VL------SRKMDSQQNFSFDVLKEDEAWSLFKKM 322 (395)
Q Consensus 256 ~LlVlDdv~~~~---~~-~~l~~~l~~-~~~gs~iivTtR~~~--va------~~~~~~~~~~~l~~L~~~e~~~lf~~~ 322 (395)
-+|+|||+.... .+ +.+...+.. ...|..+|+|+.... +. .........+++++.+.++-..++.+.
T Consensus 213 dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~ 292 (450)
T PRK00149 213 DVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKK 292 (450)
T ss_pred CEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHH
Confidence 589999996431 11 122221110 112445777776431 10 112334468999999999999999998
Q ss_pred hCCCCCCCchHHHHHHHHHHcCCchHHHH----HHHHHh--hCC--CHHHHHHHHHHhc
Q 047930 323 AGDYIEGSEFKWVAREVAKECAGLPVSIV----TVARAL--RNK--RLFEWKDALEQLR 373 (395)
Q Consensus 323 ~~~~~~~~~~~~~~~~i~~~c~GlPlai~----~i~~~l--~~~--~~~~w~~~l~~l~ 373 (395)
+..... .--.++..-|++.+.|..-.+. .+..+- .++ +....+.++..+.
T Consensus 293 ~~~~~~-~l~~e~l~~ia~~~~~~~R~l~~~l~~l~~~~~~~~~~it~~~~~~~l~~~~ 350 (450)
T PRK00149 293 AEEEGI-DLPDEVLEFIAKNITSNVRELEGALNRLIAYASLTGKPITLELAKEALKDLL 350 (450)
T ss_pred HHHcCC-CCCHHHHHHHHcCcCCCHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHhh
Confidence 853221 1123478889999998876433 332221 222 7888888888763
No 113
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.15 E-value=0.00012 Score=67.60 Aligned_cols=173 Identities=18% Similarity=0.162 Sum_probs=99.4
Q ss_pred HHHHHHHHhcCCCc-eEEEEEecCCCcHHHHHHHHHHHhcccCCCCE----------------EEEEEeCCcCCHHHHHH
Q 047930 162 TLNDILDALKNPDV-NMLGIYGMGGIGKTTLAKEVARKAENEKLFDQ----------------VIFVEVSQIQDIRKIQG 224 (395)
Q Consensus 162 ~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~----------------~~wv~~s~~~~~~~~~~ 224 (395)
..+.+...+..++. ..+.++|+.|+||+++|..+....-.+....+ ..|+.......
T Consensus 12 ~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~------ 85 (319)
T PRK08769 12 AYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRT------ 85 (319)
T ss_pred HHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcc------
Confidence 45566676666654 45889999999999999998876543221110 11111000000
Q ss_pred HHHHHhCCCccccchhhhHHHHHHHHh----cCCeEEEEEeCCCCcc--ccchhccccCCCCCCcEEEEeecc-hhhhhh
Q 047930 225 EFADKLGLTLHEETESGRARSLCNRLK----KEKRILVILDNIWENL--DFQAVGIPHGDGHKGSKVLLTARS-LDVLSR 297 (395)
Q Consensus 225 ~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iivTtR~-~~va~~ 297 (395)
+......-..+.+..+.+.+. .+++-++|||+++... .-+.+...+-....++.+|++|.+ ..+...
T Consensus 86 ------~~k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpT 159 (319)
T PRK08769 86 ------GDKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPAT 159 (319)
T ss_pred ------cccccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchH
Confidence 000000001122333333332 2566799999997653 334444444333456667766665 445444
Q ss_pred cCCCcceeecCCCChHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHHHHHH
Q 047930 298 KMDSQQNFSFDVLKEDEAWSLFKKMAGDYIEGSEFKWVAREVAKECAGLPVSIVTV 353 (395)
Q Consensus 298 ~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~i 353 (395)
..+....+.+.+++.+++...+... + .. + .-+..++..++|.|+....+
T Consensus 160 IrSRCq~i~~~~~~~~~~~~~L~~~-~--~~-~---~~a~~~~~l~~G~p~~A~~~ 208 (319)
T PRK08769 160 IRSRCQRLEFKLPPAHEALAWLLAQ-G--VS-E---RAAQEALDAARGHPGLAAQW 208 (319)
T ss_pred HHhhheEeeCCCcCHHHHHHHHHHc-C--CC-h---HHHHHHHHHcCCCHHHHHHH
Confidence 5566778999999999999888754 1 11 1 12567899999999866543
No 114
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.15 E-value=1.2e-05 Score=80.72 Aligned_cols=203 Identities=11% Similarity=0.098 Sum_probs=105.3
Q ss_pred cccccccchhchHHHHHHHHHHhcC-----CCceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCC---cCCH
Q 047930 148 LSNKDYEAFESRMSTLNDILDALKN-----PDVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQ---IQDI 219 (395)
Q Consensus 148 ~~~~~~~~~~gr~~~~~~l~~~l~~-----~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~---~~~~ 219 (395)
..|.....+++....+.++..++.. ....++.|+|+.|+||||+++.++.... ++..-|.+-.. ..+.
T Consensus 78 yrP~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~----~~~~Ew~npv~~~~~~~~ 153 (637)
T TIGR00602 78 YKPETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELG----IQVQEWSNPTLPDFQKND 153 (637)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhh----hHHHHHhhhhhhcccccc
Confidence 3456667788988888888888763 2335699999999999999999997653 22222321110 0000
Q ss_pred HHHHHHHHHHhCCCccccchhhhHHHHHHHH----------hcCCeEEEEEeCCCCcc-----ccchhcc-ccCCCCCCc
Q 047930 220 RKIQGEFADKLGLTLHEETESGRARSLCNRL----------KKEKRILVILDNIWENL-----DFQAVGI-PHGDGHKGS 283 (395)
Q Consensus 220 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l----------~~~kr~LlVlDdv~~~~-----~~~~l~~-~l~~~~~gs 283 (395)
..+...+..++.... +.......+.... ..+++.+|+||++.+.. .+..+.. .+.....-.
T Consensus 154 ~~~~~s~~~~~~~~~---s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r~~~~lq~lLr~~~~e~~~~p 230 (637)
T TIGR00602 154 HKVTLSLESCFSNFQ---SQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYRDTRALHEILRWKYVSIGRCP 230 (637)
T ss_pred cccchhhhhcccccc---chHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchhhHHHHHHHHHHHhhcCCCce
Confidence 111111222221110 1111111111111 12467899999995432 2333333 222222222
Q ss_pred EEEEeecchh---------hh------hhc--CCCcceeecCCCChHHHHHHHHHhhCCCCC---CC---chHHHHHHHH
Q 047930 284 KVLLTARSLD---------VL------SRK--MDSQQNFSFDVLKEDEAWSLFKKMAGDYIE---GS---EFKWVAREVA 340 (395)
Q Consensus 284 ~iivTtR~~~---------va------~~~--~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~---~~---~~~~~~~~i~ 340 (395)
-|++||-+.. .. ... ......|.+.|++..+..+.+.+.+..... .. .-.+....|+
T Consensus 231 LI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv~~I~FnPia~t~l~K~L~rIl~~E~~~~~~~~~~p~~~~l~~I~ 310 (637)
T TIGR00602 231 LVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRVSNISFNPIAPTIMKKFLNRIVTIEAKKNGEKIKVPKKTSVELLC 310 (637)
T ss_pred EEEEecCCccccccccccccchhcccCHhHhcccceeEEEeCCCCHHHHHHHHHHHHHhhhhccccccccCCHHHHHHHH
Confidence 3455552211 00 001 123346899999999988877777642110 11 0134677888
Q ss_pred HHcCCchHHHHHHHHHh
Q 047930 341 KECAGLPVSIVTVARAL 357 (395)
Q Consensus 341 ~~c~GlPlai~~i~~~l 357 (395)
..++|---.+...-.++
T Consensus 311 ~~s~GDiRsAIn~LQf~ 327 (637)
T TIGR00602 311 QGCSGDIRSAINSLQFS 327 (637)
T ss_pred HhCCChHHHHHHHHHHH
Confidence 88888765444444443
No 115
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.14 E-value=5.1e-05 Score=73.79 Aligned_cols=181 Identities=14% Similarity=0.130 Sum_probs=106.1
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCccccchhhhHHHHHHHHhcCCe
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFADKLGLTLHEETESGRARSLCNRLKKEKR 255 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr 255 (395)
.-+.|+|++|+|||.|++.+++.......-..++|++. .++..++...+... ....+.+.+. .+.
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~------~~f~~~~~~~~~~~--------~~~~f~~~~~-~~~ 195 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS------EKFLNDLVDSMKEG--------KLNEFREKYR-KKV 195 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH------HHHHHHHHHHHhcc--------cHHHHHHHHH-hcC
Confidence 45889999999999999999998654321124666653 45566666555321 1223344433 235
Q ss_pred EEEEEeCCCCcc---cc-chhccccCC-CCCCcEEEEeecc-hh----hhh---hcCCCcceeecCCCChHHHHHHHHHh
Q 047930 256 ILVILDNIWENL---DF-QAVGIPHGD-GHKGSKVLLTARS-LD----VLS---RKMDSQQNFSFDVLKEDEAWSLFKKM 322 (395)
Q Consensus 256 ~LlVlDdv~~~~---~~-~~l~~~l~~-~~~gs~iivTtR~-~~----va~---~~~~~~~~~~l~~L~~~e~~~lf~~~ 322 (395)
-+|+|||+.... .+ ..+...+.. ...|..||+||.. .. +.. ........+.+++.+.+.-..++++.
T Consensus 196 dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~ 275 (440)
T PRK14088 196 DVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKM 275 (440)
T ss_pred CEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHH
Confidence 589999997431 12 122222210 1224468888752 21 111 11233458899999999999999988
Q ss_pred hCCCCCCCchHHHHHHHHHHcCCchHHHHHHHHH------hhCC--CHHHHHHHHHHh
Q 047930 323 AGDYIEGSEFKWVAREVAKECAGLPVSIVTVARA------LRNK--RLFEWKDALEQL 372 (395)
Q Consensus 323 ~~~~~~~~~~~~~~~~i~~~c~GlPlai~~i~~~------l~~~--~~~~w~~~l~~l 372 (395)
+...... --.++..-|++.+.|..-.+.-+-.- +.++ +....+.++..+
T Consensus 276 ~~~~~~~-l~~ev~~~Ia~~~~~~~R~L~g~l~~l~~~~~~~~~~it~~~a~~~L~~~ 332 (440)
T PRK14088 276 LEIEHGE-LPEEVLNFVAENVDDNLRRLRGAIIKLLVYKETTGEEVDLKEAILLLKDF 332 (440)
T ss_pred HHhcCCC-CCHHHHHHHHhccccCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 8532211 12347888998888865443332211 1222 778888888775
No 116
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=98.14 E-value=3.7e-05 Score=74.05 Aligned_cols=200 Identities=20% Similarity=0.252 Sum_probs=109.3
Q ss_pred cccchhchHHHHHHHHHHhc----C---------CCceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCC
Q 047930 152 DYEAFESRMSTLNDILDALK----N---------PDVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQD 218 (395)
Q Consensus 152 ~~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~ 218 (395)
.+.++.|.+..++++.+.+. . .....+.++|++|+|||++|+.+++.... .| +.+..+.
T Consensus 181 ~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~--~f---i~V~~se--- 252 (438)
T PTZ00361 181 SYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSA--TF---LRVVGSE--- 252 (438)
T ss_pred CHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCC--CE---EEEecch---
Confidence 34556677777777666542 1 23456889999999999999999997642 23 2222111
Q ss_pred HHHHHHHHHHHhCCCccccchhhhHHHHHHHHhcCCeEEEEEeCCCCcc------------c----cchhccccC--CCC
Q 047930 219 IRKIQGEFADKLGLTLHEETESGRARSLCNRLKKEKRILVILDNIWENL------------D----FQAVGIPHG--DGH 280 (395)
Q Consensus 219 ~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~------------~----~~~l~~~l~--~~~ 280 (395)
+.... ++ .....+..+.+....+.+.+|+||+++... . +..+...+. ...
T Consensus 253 ---L~~k~---~G------e~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~ 320 (438)
T PTZ00361 253 ---LIQKY---LG------DGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSR 320 (438)
T ss_pred ---hhhhh---cc------hHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhccc
Confidence 11110 00 011123334444444678899999975321 0 011111110 123
Q ss_pred CCcEEEEeecchhhhhh-cC---CCcceeecCCCChHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHH-HHHH--
Q 047930 281 KGSKVLLTARSLDVLSR-KM---DSQQNFSFDVLKEDEAWSLFKKMAGDYIEGSEFKWVAREVAKECAGLPVS-IVTV-- 353 (395)
Q Consensus 281 ~gs~iivTtR~~~va~~-~~---~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPla-i~~i-- 353 (395)
.+..||.||........ .. .....|++.+.+.++..++|..++......++. -...++..+.|+--| |..+
T Consensus 321 ~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dv--dl~~la~~t~g~sgAdI~~i~~ 398 (438)
T PTZ00361 321 GDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDV--DLEEFIMAKDELSGADIKAICT 398 (438)
T ss_pred CCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCc--CHHHHHHhcCCCCHHHHHHHHH
Confidence 35678888876443211 11 234579999999999999999877533222221 134566666665432 3333
Q ss_pred -HHHhh---C--C-CHHHHHHHHHHhc
Q 047930 354 -ARALR---N--K-RLFEWKDALEQLR 373 (395)
Q Consensus 354 -~~~l~---~--~-~~~~w~~~l~~l~ 373 (395)
|+.++ . . +.+.+..+++...
T Consensus 399 eA~~~Alr~~r~~Vt~~D~~~A~~~v~ 425 (438)
T PTZ00361 399 EAGLLALRERRMKVTQADFRKAKEKVL 425 (438)
T ss_pred HHHHHHHHhcCCccCHHHHHHHHHHHH
Confidence 33432 2 2 6677777777643
No 117
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.13 E-value=0.00037 Score=64.41 Aligned_cols=174 Identities=12% Similarity=0.054 Sum_probs=98.3
Q ss_pred HHHHHHHhcCCC-ceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCc-----c-
Q 047930 163 LNDILDALKNPD-VNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFADKLGLTL-----H- 235 (395)
Q Consensus 163 ~~~l~~~l~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~-----~- 235 (395)
.+.+...+..++ ...+.++|+.|+||+++|..+....-..+.-+. .++.. ..-+.+...-..+. .
T Consensus 12 ~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~----~Cg~C----~sC~~~~~g~HPD~~~i~p~~ 83 (319)
T PRK06090 12 WQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSE----ACGFC----HSCELMQSGNHPDLHVIKPEK 83 (319)
T ss_pred HHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCC----CCCCC----HHHHHHHcCCCCCEEEEecCc
Confidence 445556665554 457889999999999999999876432211000 00000 00001100000000 0
Q ss_pred --ccchhhhHHHHHHHHh----cCCeEEEEEeCCCCc--cccchhccccCCCCCCcEEEEeecc-hhhhhhcCCCcceee
Q 047930 236 --EETESGRARSLCNRLK----KEKRILVILDNIWEN--LDFQAVGIPHGDGHKGSKVLLTARS-LDVLSRKMDSQQNFS 306 (395)
Q Consensus 236 --~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR~-~~va~~~~~~~~~~~ 306 (395)
..-..+.+..+.+.+. .+++-++|||+++.. ...+.+...+-...+++.+|++|.+ ..+.....+....+.
T Consensus 84 ~~~~I~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~~~ 163 (319)
T PRK06090 84 EGKSITVEQIRQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWV 163 (319)
T ss_pred CCCcCCHHHHHHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcceeEe
Confidence 0001112233333332 245568999999754 3455565555444456666666655 455555566778999
Q ss_pred cCCCChHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHHHHHH
Q 047930 307 FDVLKEDEAWSLFKKMAGDYIEGSEFKWVAREVAKECAGLPVSIVTV 353 (395)
Q Consensus 307 l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~i 353 (395)
+.+++++++.+.+.... .. ....++..++|.|+....+
T Consensus 164 ~~~~~~~~~~~~L~~~~---~~------~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 164 VTPPSTAQAMQWLKGQG---IT------VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred CCCCCHHHHHHHHHHcC---Cc------hHHHHHHHcCCCHHHHHHH
Confidence 99999999999887642 11 1356788999999977544
No 118
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.13 E-value=0.00014 Score=66.41 Aligned_cols=200 Identities=19% Similarity=0.290 Sum_probs=117.7
Q ss_pred ccccchhchHHHHHHHHHHhc----C---------CCceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcC
Q 047930 151 KDYEAFESRMSTLNDILDALK----N---------PDVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQ 217 (395)
Q Consensus 151 ~~~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~ 217 (395)
..+..+-|-++.+++|.+.+. + ..++=|.++|++|+|||-||+.+++.-... |+.+..+
T Consensus 148 vtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~At-------FIrvvgS- 219 (406)
T COG1222 148 VTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDAT-------FIRVVGS- 219 (406)
T ss_pred CChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCce-------EEEeccH-
Confidence 345555567777777766653 1 245668899999999999999999976532 4444332
Q ss_pred CHHHHHHHHHHHhCCCccccchhhhHHHHHHHHhcCCeEEEEEeCCCCcc------------c----cchhccccC--CC
Q 047930 218 DIRKIQGEFADKLGLTLHEETESGRARSLCNRLKKEKRILVILDNIWENL------------D----FQAVGIPHG--DG 279 (395)
Q Consensus 218 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~------------~----~~~l~~~l~--~~ 279 (395)
++.++.+ | .....+..+.+.-+.+.+++|++|.++... . .-+|...+- +.
T Consensus 220 ---ElVqKYi---G------EGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~ 287 (406)
T COG1222 220 ---ELVQKYI---G------EGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDP 287 (406)
T ss_pred ---HHHHHHh---c------cchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCC
Confidence 2222222 1 122345566666666889999999986431 0 111222221 22
Q ss_pred CCCcEEEEeecchhhh-hhcC---CCcceeecCCCChHHHHHHHHHhhCCC--CCCCchHHHHHHHHHHcCCchH----H
Q 047930 280 HKGSKVLLTARSLDVL-SRKM---DSQQNFSFDVLKEDEAWSLFKKMAGDY--IEGSEFKWVAREVAKECAGLPV----S 349 (395)
Q Consensus 280 ~~gs~iivTtR~~~va-~~~~---~~~~~~~l~~L~~~e~~~lf~~~~~~~--~~~~~~~~~~~~i~~~c~GlPl----a 349 (395)
....|||..|.-.++. ...+ .-...|+++.-+.+.-.++|+=+...- ...-++ +.+++.|.|.-= |
T Consensus 288 ~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~----e~la~~~~g~sGAdlka 363 (406)
T COG1222 288 RGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDL----ELLARLTEGFSGADLKA 363 (406)
T ss_pred CCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCH----HHHHHhcCCCchHHHHH
Confidence 3456888887765543 1111 234578887555555567777666432 233343 467778887753 4
Q ss_pred HHHHHHHhh--C-C---CHHHHHHHHHHhcC
Q 047930 350 IVTVARALR--N-K---RLFEWKDALEQLRR 374 (395)
Q Consensus 350 i~~i~~~l~--~-~---~~~~w~~~l~~l~~ 374 (395)
+.+=|++++ . + +.+....+.+..-.
T Consensus 364 ictEAGm~AiR~~R~~Vt~~DF~~Av~KV~~ 394 (406)
T COG1222 364 ICTEAGMFAIRERRDEVTMEDFLKAVEKVVK 394 (406)
T ss_pred HHHHHhHHHHHhccCeecHHHHHHHHHHHHh
Confidence 555577764 2 2 66777777666433
No 119
>CHL00176 ftsH cell division protein; Validated
Probab=98.13 E-value=7.3e-05 Score=75.59 Aligned_cols=197 Identities=20% Similarity=0.317 Sum_probs=107.2
Q ss_pred cchhchHH---HHHHHHHHhcCC---------CceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHH
Q 047930 154 EAFESRMS---TLNDILDALKNP---------DVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRK 221 (395)
Q Consensus 154 ~~~~gr~~---~~~~l~~~l~~~---------~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~ 221 (395)
.++.|.++ ++.++++.+..+ ..+-+.++|++|+|||+||+.++...... |+.++.. +
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p-------~i~is~s----~ 251 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVP-------FFSISGS----E 251 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCC-------eeeccHH----H
Confidence 34455444 444555555432 24568899999999999999999876432 2333211 1
Q ss_pred HHHHHHHHhCCCccccchhhhHHHHHHHHhcCCeEEEEEeCCCCcc------------c----cchhccccC--CCCCCc
Q 047930 222 IQGEFADKLGLTLHEETESGRARSLCNRLKKEKRILVILDNIWENL------------D----FQAVGIPHG--DGHKGS 283 (395)
Q Consensus 222 ~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~------------~----~~~l~~~l~--~~~~gs 283 (395)
+.... .+. ....+..+.+......+++|+|||++... . +..+...+. ....+.
T Consensus 252 f~~~~---~g~------~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~V 322 (638)
T CHL00176 252 FVEMF---VGV------GAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGV 322 (638)
T ss_pred HHHHh---hhh------hHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCe
Confidence 11100 000 11123344444445678999999996431 1 111211111 123455
Q ss_pred EEEEeecchhhhh-hcC---CCcceeecCCCChHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCc-hHHHHHHHH---
Q 047930 284 KVLLTARSLDVLS-RKM---DSQQNFSFDVLKEDEAWSLFKKMAGDYIEGSEFKWVAREVAKECAGL-PVSIVTVAR--- 355 (395)
Q Consensus 284 ~iivTtR~~~va~-~~~---~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~Gl-Plai~~i~~--- 355 (395)
.||.||....... ... .....+.+...+.++-.++|+.++......++ .....+++.+.|. +--|..+..
T Consensus 323 iVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~d--~~l~~lA~~t~G~sgaDL~~lvneAa 400 (638)
T CHL00176 323 IVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSPD--VSLELIARRTPGFSGADLANLLNEAA 400 (638)
T ss_pred eEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccchh--HHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 6677776543221 111 22457889999999999999988754322222 2356788888883 333333322
Q ss_pred Hh--h-CC---CHHHHHHHHHHh
Q 047930 356 AL--R-NK---RLFEWKDALEQL 372 (395)
Q Consensus 356 ~l--~-~~---~~~~w~~~l~~l 372 (395)
++ + ++ +.++.+.++++.
T Consensus 401 l~a~r~~~~~It~~dl~~Ai~rv 423 (638)
T CHL00176 401 ILTARRKKATITMKEIDTAIDRV 423 (638)
T ss_pred HHHHHhCCCCcCHHHHHHHHHHH
Confidence 11 1 22 667777777765
No 120
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=98.10 E-value=1.3e-05 Score=82.46 Aligned_cols=158 Identities=16% Similarity=0.193 Sum_probs=92.1
Q ss_pred ccchhchHHHHHHHHHHhcCCCceEEEEEecCCCcHHHHHHHHHHHhcccC-C---CCEEEEEEeCCcCCHHHHHHHHHH
Q 047930 153 YEAFESRMSTLNDILDALKNPDVNMLGIYGMGGIGKTTLAKEVARKAENEK-L---FDQVIFVEVSQIQDIRKIQGEFAD 228 (395)
Q Consensus 153 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~-~---f~~~~wv~~s~~~~~~~~~~~i~~ 228 (395)
..+++||++++.+++..|.......+.++|++|+|||++|+.+++...... . .++.+|.. +...+ +.
T Consensus 185 ~~~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~~l----la 255 (758)
T PRK11034 185 IDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIGSL----LA 255 (758)
T ss_pred CCcCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHHHH----hc
Confidence 457899999999999988865555677999999999999999997643221 1 23444421 11111 10
Q ss_pred HhCCCccccchhhhHHHHHHHHhcCCeEEEEEeCCCCc----------cccchhccccCCCCCCcEEEEeecchhhh---
Q 047930 229 KLGLTLHEETESGRARSLCNRLKKEKRILVILDNIWEN----------LDFQAVGIPHGDGHKGSKVLLTARSLDVL--- 295 (395)
Q Consensus 229 ~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~----------~~~~~l~~~l~~~~~gs~iivTtR~~~va--- 295 (395)
+.. ........+..+.+.+.+.++.+|+||++... .+...+..++... ..-++|-+|......
T Consensus 256 --G~~-~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~-g~i~vIgATt~~E~~~~~ 331 (758)
T PRK11034 256 --GTK-YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS-GKIRVIGSTTYQEFSNIF 331 (758)
T ss_pred --ccc-hhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhC-CCeEEEecCChHHHHHHh
Confidence 000 01111223445555554456789999999643 1111222333222 233455544433210
Q ss_pred ---hhcCCCcceeecCCCChHHHHHHHHHhh
Q 047930 296 ---SRKMDSQQNFSFDVLKEDEAWSLFKKMA 323 (395)
Q Consensus 296 ---~~~~~~~~~~~l~~L~~~e~~~lf~~~~ 323 (395)
.........+.+++++.++...++....
T Consensus 332 ~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 332 EKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred hccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 1112234589999999999999998654
No 121
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.10 E-value=0.00024 Score=65.85 Aligned_cols=175 Identities=12% Similarity=0.047 Sum_probs=99.4
Q ss_pred HHHHHHHhcCCC-ceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCC-------c
Q 047930 163 LNDILDALKNPD-VNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFADKLGLT-------L 234 (395)
Q Consensus 163 ~~~l~~~l~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~-------~ 234 (395)
-..+...+..++ .....++|+.|+||+++|..+....-....... .........+.+...-..+ .
T Consensus 11 ~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~-------~~Cg~C~sC~~~~~g~HPD~~~i~p~~ 83 (325)
T PRK06871 11 YQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGD-------QPCGQCHSCHLFQAGNHPDFHILEPID 83 (325)
T ss_pred HHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCC-------CCCCCCHHHHHHhcCCCCCEEEEcccc
Confidence 445666666554 456778999999999999999876543221100 0000001111111100000 0
Q ss_pred cccchhhhHHHHHHHHh----cCCeEEEEEeCCCCc--cccchhccccCCCCCCcEEEEeecc-hhhhhhcCCCcceeec
Q 047930 235 HEETESGRARSLCNRLK----KEKRILVILDNIWEN--LDFQAVGIPHGDGHKGSKVLLTARS-LDVLSRKMDSQQNFSF 307 (395)
Q Consensus 235 ~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR~-~~va~~~~~~~~~~~l 307 (395)
...-..+.+..+.+.+. .+++-++|+|+++.. ...+.+...+-....++.+|++|.+ ..+.....+....+.+
T Consensus 84 ~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~~~ 163 (325)
T PRK06871 84 NKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTWLI 163 (325)
T ss_pred CCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEEeC
Confidence 00011223334444442 256668889999765 3455555555444556667777765 4454444566789999
Q ss_pred CCCChHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHHH
Q 047930 308 DVLKEDEAWSLFKKMAGDYIEGSEFKWVAREVAKECAGLPVSI 350 (395)
Q Consensus 308 ~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai 350 (395)
.++++++..+.+...... .. ..+...+..++|.|+..
T Consensus 164 ~~~~~~~~~~~L~~~~~~---~~---~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 164 HPPEEQQALDWLQAQSSA---EI---SEILTALRINYGRPLLA 200 (325)
T ss_pred CCCCHHHHHHHHHHHhcc---Ch---HHHHHHHHHcCCCHHHH
Confidence 999999999988876421 11 12556788899999733
No 122
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.09 E-value=1.8e-05 Score=63.75 Aligned_cols=90 Identities=29% Similarity=0.227 Sum_probs=50.0
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCccccchhhhHHHHHHHHhcCCe
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFADKLGLTLHEETESGRARSLCNRLKKEKR 255 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr 255 (395)
..+.|+|++|+||||+++.++....... ..++++..+........... ...................+.+.....+.
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPG--GGVIYIDGEDILEEVLDQLL-LIIVGGKKASGSGELRLRLALALARKLKP 79 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCC--CCEEEECCEEccccCHHHHH-hhhhhccCCCCCHHHHHHHHHHHHHhcCC
Confidence 5788999999999999999998765432 23555555443222111111 11111111111222233344444443334
Q ss_pred EEEEEeCCCCccc
Q 047930 256 ILVILDNIWENLD 268 (395)
Q Consensus 256 ~LlVlDdv~~~~~ 268 (395)
.+|++|++.....
T Consensus 80 ~viiiDei~~~~~ 92 (148)
T smart00382 80 DVLILDEITSLLD 92 (148)
T ss_pred CEEEEECCcccCC
Confidence 8999999987643
No 123
>PRK06620 hypothetical protein; Validated
Probab=98.09 E-value=2.8e-05 Score=67.95 Aligned_cols=137 Identities=17% Similarity=0.032 Sum_probs=80.8
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCccccchhhhHHHHHHHHhcCCe
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFADKLGLTLHEETESGRARSLCNRLKKEKR 255 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr 255 (395)
+.+.|+|++|+|||+|++.+.+.... .++. ..+.. . +... ..
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~-------~~~~--~~~~~-------------------~--------~~~~--~~ 86 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNA-------YIIK--DIFFN-------------------E--------EILE--KY 86 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCC-------EEcc--hhhhc-------------------h--------hHHh--cC
Confidence 56899999999999999987765421 1211 00000 0 0111 23
Q ss_pred EEEEEeCCCCcc--ccchhccccCCCCCCcEEEEeecchhhh------hhcCCCcceeecCCCChHHHHHHHHHhhCCCC
Q 047930 256 ILVILDNIWENL--DFQAVGIPHGDGHKGSKVLLTARSLDVL------SRKMDSQQNFSFDVLKEDEAWSLFKKMAGDYI 327 (395)
Q Consensus 256 ~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iivTtR~~~va------~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~ 327 (395)
-+|++||+.... .+..+...+. ..|..+|+|++..... ...+....+++++++++++...++.+.+....
T Consensus 87 d~lliDdi~~~~~~~lf~l~N~~~--e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~ 164 (214)
T PRK06620 87 NAFIIEDIENWQEPALLHIFNIIN--EKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSISS 164 (214)
T ss_pred CEEEEeccccchHHHHHHHHHHHH--hcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcC
Confidence 578899996321 1112222221 3466899988753321 11123445899999999999999888774321
Q ss_pred CCCchHHHHHHHHHHcCCchHHHHHH
Q 047930 328 EGSEFKWVAREVAKECAGLPVSIVTV 353 (395)
Q Consensus 328 ~~~~~~~~~~~i~~~c~GlPlai~~i 353 (395)
.. --+++.+-|++.+.|..-.+.-+
T Consensus 165 l~-l~~ev~~~L~~~~~~d~r~l~~~ 189 (214)
T PRK06620 165 VT-ISRQIIDFLLVNLPREYSKIIEI 189 (214)
T ss_pred CC-CCHHHHHHHHHHccCCHHHHHHH
Confidence 11 12347788888888876554433
No 124
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.09 E-value=0.00014 Score=68.14 Aligned_cols=160 Identities=9% Similarity=0.050 Sum_probs=87.7
Q ss_pred hhc-hHHHHHHHHHHhcCCCc-eEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCC
Q 047930 156 FES-RMSTLNDILDALKNPDV-NMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFADKLGLT 233 (395)
Q Consensus 156 ~~g-r~~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~ 233 (395)
++| .+...+.+...+..++. ....++|+.|+||||+|..+.+..-........ .+ ......+.+...-..+
T Consensus 7 i~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~---~c----g~C~~c~~~~~~~hpD 79 (329)
T PRK08058 7 LTALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVE---PC----GTCTNCKRIDSGNHPD 79 (329)
T ss_pred HHhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCC---CC----CcCHHHHHHhcCCCCC
Confidence 445 55566777777766654 456899999999999999998775332211000 00 0000000000000000
Q ss_pred ------ccccchhhhHHHHHHHHh----cCCeEEEEEeCCCCcc--ccchhccccCCCCCCcEEEEeecc-hhhhhhcCC
Q 047930 234 ------LHEETESGRARSLCNRLK----KEKRILVILDNIWENL--DFQAVGIPHGDGHKGSKVLLTARS-LDVLSRKMD 300 (395)
Q Consensus 234 ------~~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iivTtR~-~~va~~~~~ 300 (395)
.......+.+..+.+.+. .+.+-++|+|++.... ..+.+...+.....++.+|++|.+ ..+.....+
T Consensus 80 ~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~TIrS 159 (329)
T PRK08058 80 VHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPTILS 159 (329)
T ss_pred EEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCcHHHHh
Confidence 000001122233333332 2455689999986542 344455555444456777777765 334344456
Q ss_pred CcceeecCCCChHHHHHHHHHh
Q 047930 301 SQQNFSFDVLKEDEAWSLFKKM 322 (395)
Q Consensus 301 ~~~~~~l~~L~~~e~~~lf~~~ 322 (395)
....+++.++++++....+...
T Consensus 160 Rc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 160 RCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred hceeeeCCCCCHHHHHHHHHHc
Confidence 6779999999999998888654
No 125
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=98.06 E-value=0.00038 Score=60.83 Aligned_cols=180 Identities=17% Similarity=0.167 Sum_probs=105.3
Q ss_pred CCCceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeC-CcCCHHHHHHHHHHHhCCCccccchhh----hHHHH
Q 047930 172 NPDVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVS-QIQDIRKIQGEFADKLGLTLHEETESG----RARSL 246 (395)
Q Consensus 172 ~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s-~~~~~~~~~~~i~~~l~~~~~~~~~~~----~~~~l 246 (395)
..+.+++.++|.-|+|||++.+.+....... .++-+.+. +..+...+...++..+..+ +...... ....+
T Consensus 48 ~d~qg~~~vtGevGsGKTv~~Ral~~s~~~d----~~~~v~i~~~~~s~~~~~~ai~~~l~~~-p~~~~~~~~e~~~~~L 122 (269)
T COG3267 48 ADGQGILAVTGEVGSGKTVLRRALLASLNED----QVAVVVIDKPTLSDATLLEAIVADLESQ-PKVNVNAVLEQIDREL 122 (269)
T ss_pred hcCCceEEEEecCCCchhHHHHHHHHhcCCC----ceEEEEecCcchhHHHHHHHHHHHhccC-ccchhHHHHHHHHHHH
Confidence 4556789999999999999999554443221 12223333 3456777888888888762 2222221 22234
Q ss_pred HHHHhcCCe-EEEEEeCCCCc--cccchhcc---ccCCCCCCcEEEEeecch-------hhhhhcCCCcce-eecCCCCh
Q 047930 247 CNRLKKEKR-ILVILDNIWEN--LDFQAVGI---PHGDGHKGSKVLLTARSL-------DVLSRKMDSQQN-FSFDVLKE 312 (395)
Q Consensus 247 ~~~l~~~kr-~LlVlDdv~~~--~~~~~l~~---~l~~~~~gs~iivTtR~~-------~va~~~~~~~~~-~~l~~L~~ 312 (395)
....++++| ..+++||..+. +..+.+.. .-.+....-+|+.....+ .+.........+ |++.|++.
T Consensus 123 ~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~ 202 (269)
T COG3267 123 AALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTE 202 (269)
T ss_pred HHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcCh
Confidence 444455777 99999998654 23333221 111111112344433221 011111123334 99999999
Q ss_pred HHHHHHHHHhhCCCCCCC--chHHHHHHHHHHcCCchHHHHHHHHH
Q 047930 313 DEAWSLFKKMAGDYIEGS--EFKWVAREVAKECAGLPVSIVTVARA 356 (395)
Q Consensus 313 ~e~~~lf~~~~~~~~~~~--~~~~~~~~i~~~c~GlPlai~~i~~~ 356 (395)
++...++...+.....++ --.+....|.....|.|.+|..++..
T Consensus 203 ~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~~ 248 (269)
T COG3267 203 AETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLATL 248 (269)
T ss_pred HHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHHH
Confidence 999999998885332222 22346788999999999999887643
No 126
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.04 E-value=6.2e-05 Score=62.83 Aligned_cols=137 Identities=19% Similarity=0.185 Sum_probs=77.0
Q ss_pred chHHHHHHHHHHhcCCCc-eEEEEEecCCCcHHHHHHHHHHHhcccCCC------------------CEEEEEEeCCc--
Q 047930 158 SRMSTLNDILDALKNPDV-NMLGIYGMGGIGKTTLAKEVARKAENEKLF------------------DQVIFVEVSQI-- 216 (395)
Q Consensus 158 gr~~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f------------------~~~~wv~~s~~-- 216 (395)
|.++..+.|...+..++. ..+.++|+.|+||+++|..+....-..... ....|+.-...
T Consensus 1 gq~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~ 80 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKK 80 (162)
T ss_dssp S-HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSS
T ss_pred CcHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccc
Confidence 345566777777776664 457999999999999999998865432221 11233332221
Q ss_pred -CCHHHHHHHHHHHhCCCccccchhhhHHHHHHHHhcCCeEEEEEeCCCCc--cccchhccccCCCCCCcEEEEeecchh
Q 047930 217 -QDIRKIQGEFADKLGLTLHEETESGRARSLCNRLKKEKRILVILDNIWEN--LDFQAVGIPHGDGHKGSKVLLTARSLD 293 (395)
Q Consensus 217 -~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR~~~ 293 (395)
...+++. ++...+..... .++.=++||||++.. .....+...+-....++.+|++|.+..
T Consensus 81 ~i~i~~ir-~i~~~~~~~~~----------------~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~ 143 (162)
T PF13177_consen 81 SIKIDQIR-EIIEFLSLSPS----------------EGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPS 143 (162)
T ss_dssp SBSHHHHH-HHHHHCTSS-T----------------TSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GG
T ss_pred hhhHHHHH-HHHHHHHHHHh----------------cCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChH
Confidence 2222222 33333322111 145678999999765 455666655555556888888888754
Q ss_pred -hhhhcCCCcceeecCCCC
Q 047930 294 -VLSRKMDSQQNFSFDVLK 311 (395)
Q Consensus 294 -va~~~~~~~~~~~l~~L~ 311 (395)
+..........+.+.+||
T Consensus 144 ~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 144 KILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp GS-HHHHTTSEEEEE----
T ss_pred HChHHHHhhceEEecCCCC
Confidence 444445666788887765
No 127
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=98.03 E-value=6.6e-05 Score=73.09 Aligned_cols=189 Identities=16% Similarity=0.176 Sum_probs=113.6
Q ss_pred cccccchhchHHHHHHHHHHhcCCC-ceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHHH
Q 047930 150 NKDYEAFESRMSTLNDILDALKNPD-VNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFAD 228 (395)
Q Consensus 150 ~~~~~~~~gr~~~~~~l~~~l~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 228 (395)
|....+++|.+.....|...+..++ ..--...|+.|+||||+|+.++...-.... ....++......++|..
T Consensus 12 P~~F~evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~-------~~~ePC~~C~~Ck~I~~ 84 (515)
T COG2812 12 PKTFDDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCENG-------PTAEPCGKCISCKEINE 84 (515)
T ss_pred cccHHHhcccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcCCCC-------CCCCcchhhhhhHhhhc
Confidence 4556678899888888888887554 234457799999999999999876433210 11111222222223322
Q ss_pred HhCCCc---c--ccchhhhHHHHHHHHh----cCCeEEEEEeCCCCc--cccchhccccCCCCCCcEEEE-eecchhhhh
Q 047930 229 KLGLTL---H--EETESGRARSLCNRLK----KEKRILVILDNIWEN--LDFQAVGIPHGDGHKGSKVLL-TARSLDVLS 296 (395)
Q Consensus 229 ~l~~~~---~--~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iiv-TtR~~~va~ 296 (395)
.-..+. + .....+.+..+.+... .++-=+.|||+|... ..|..+...+-....+...|. ||-...++.
T Consensus 85 g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~ 164 (515)
T COG2812 85 GSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPN 164 (515)
T ss_pred CCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCch
Confidence 200000 0 1112234555555554 345558999999654 577877766644444555554 555566766
Q ss_pred hcCCCcceeecCCCChHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCc
Q 047930 297 RKMDSQQNFSFDVLKEDEAWSLFKKMAGDYIEGSEFKWVAREVAKECAGL 346 (395)
Q Consensus 297 ~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~Gl 346 (395)
...+.+..|.++.++.++-...+...+......-+ .+...-|++..+|.
T Consensus 165 TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~e-~~aL~~ia~~a~Gs 213 (515)
T COG2812 165 TILSRCQRFDFKRLDLEEIAKHLAAILDKEGINIE-EDALSLIARAAEGS 213 (515)
T ss_pred hhhhccccccccCCCHHHHHHHHHHHHHhcCCccC-HHHHHHHHHHcCCC
Confidence 66778889999999999999999888854332222 12345555555553
No 128
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=98.01 E-value=0.00016 Score=71.86 Aligned_cols=182 Identities=16% Similarity=0.115 Sum_probs=105.8
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCccccchhhhHHHHHHHHhcCCe
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFADKLGLTLHEETESGRARSLCNRLKKEKR 255 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr 255 (395)
..+.|+|..|+|||.|++.+++.......-..++|++. .++..++...+... ....+.+.+. +-
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yita------eef~~el~~al~~~--------~~~~f~~~y~--~~ 378 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSS------EEFTNEFINSIRDG--------KGDSFRRRYR--EM 378 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeH------HHHHHHHHHHHHhc--------cHHHHHHHhh--cC
Confidence 34889999999999999999998653211223556543 44455554443211 1223444443 23
Q ss_pred EEEEEeCCCCc---cccch-hccccCC-CCCCcEEEEeecchh--h------hhhcCCCcceeecCCCChHHHHHHHHHh
Q 047930 256 ILVILDNIWEN---LDFQA-VGIPHGD-GHKGSKVLLTARSLD--V------LSRKMDSQQNFSFDVLKEDEAWSLFKKM 322 (395)
Q Consensus 256 ~LlVlDdv~~~---~~~~~-l~~~l~~-~~~gs~iivTtR~~~--v------a~~~~~~~~~~~l~~L~~~e~~~lf~~~ 322 (395)
=+|+|||+... ..|.. +...+.. ...|..|||||.... . ....+...-++++.+.+.+.-..++.++
T Consensus 379 DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kk 458 (617)
T PRK14086 379 DILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKK 458 (617)
T ss_pred CEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHH
Confidence 58999999654 22322 2222211 123556888887521 1 0122345568999999999999999998
Q ss_pred hCCCCCCCchHHHHHHHHHHcCCchHHHHHHHHHh------hCC--CHHHHHHHHHHhcC
Q 047930 323 AGDYIEGSEFKWVAREVAKECAGLPVSIVTVARAL------RNK--RLFEWKDALEQLRR 374 (395)
Q Consensus 323 ~~~~~~~~~~~~~~~~i~~~c~GlPlai~~i~~~l------~~~--~~~~w~~~l~~l~~ 374 (395)
+......- -.++++-|++.+.+..-.|.-+-.-| .++ +...-+.+++.+..
T Consensus 459 a~~r~l~l-~~eVi~yLa~r~~rnvR~LegaL~rL~a~a~~~~~~itl~la~~vL~~~~~ 517 (617)
T PRK14086 459 AVQEQLNA-PPEVLEFIASRISRNIRELEGALIRVTAFASLNRQPVDLGLTEIVLRDLIP 517 (617)
T ss_pred HHhcCCCC-CHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhc
Confidence 85332221 23577788888777654443332211 222 66777778876543
No 129
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=98.00 E-value=7.3e-05 Score=74.06 Aligned_cols=155 Identities=23% Similarity=0.291 Sum_probs=92.9
Q ss_pred chhchHHHHHHHHHHhc------CCCceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHHH
Q 047930 155 AFESRMSTLNDILDALK------NPDVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFAD 228 (395)
Q Consensus 155 ~~~gr~~~~~~l~~~l~------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 228 (395)
+.+|-++..+++++.|. .-+-++++++|++|+|||+|++.+++-.... | +-++++.-.+..++-..=-.
T Consensus 324 dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~Rk--f---vR~sLGGvrDEAEIRGHRRT 398 (782)
T COG0466 324 DHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRK--F---VRISLGGVRDEAEIRGHRRT 398 (782)
T ss_pred cccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCC--E---EEEecCccccHHHhcccccc
Confidence 45688888888888875 2345799999999999999999999876533 4 34455554444332111000
Q ss_pred HhCCCccccchhhhHHHHHHHHh--cCCeEEEEEeCCCCcc-ccc-----hhcccc-CCCC------------CCcEE-E
Q 047930 229 KLGLTLHEETESGRARSLCNRLK--KEKRILVILDNIWENL-DFQ-----AVGIPH-GDGH------------KGSKV-L 286 (395)
Q Consensus 229 ~l~~~~~~~~~~~~~~~l~~~l~--~~kr~LlVlDdv~~~~-~~~-----~l~~~l-~~~~------------~gs~i-i 286 (395)
-+|. .-.++.+.++ +.++-|++||.++... ++. .+...| |..+ -=|.| .
T Consensus 399 YIGa---------mPGrIiQ~mkka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmF 469 (782)
T COG0466 399 YIGA---------MPGKIIQGMKKAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMF 469 (782)
T ss_pred cccc---------CChHHHHHHHHhCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEE
Confidence 1110 0113333333 2577899999997541 111 111111 0000 11333 4
Q ss_pred Eeec-chh-hhhhcCCCcceeecCCCChHHHHHHHHHhh
Q 047930 287 LTAR-SLD-VLSRKMDSQQNFSFDVLKEDEAWSLFKKMA 323 (395)
Q Consensus 287 vTtR-~~~-va~~~~~~~~~~~l~~L~~~e~~~lf~~~~ 323 (395)
|+|- +.+ ++...++.-.+|++.+.+++|=.++-++++
T Consensus 470 iaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 470 IATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred EeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 4444 333 555566778899999999999999888876
No 130
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.98 E-value=0.00028 Score=63.91 Aligned_cols=154 Identities=17% Similarity=0.173 Sum_probs=77.6
Q ss_pred HHHHHHHHHhcCCCceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHH------------H
Q 047930 161 STLNDILDALKNPDVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFA------------D 228 (395)
Q Consensus 161 ~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~------------~ 228 (395)
..++++..++..+. .+.+.|++|+|||+||+.+..... ...+.++++...+..+++.... .
T Consensus 9 ~l~~~~l~~l~~g~--~vLL~G~~GtGKT~lA~~la~~lg-----~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~ 81 (262)
T TIGR02640 9 RVTSRALRYLKSGY--PVHLRGPAGTGKTTLAMHVARKRD-----RPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIH 81 (262)
T ss_pred HHHHHHHHHHhcCC--eEEEEcCCCCCHHHHHHHHHHHhC-----CCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHH
Confidence 33455666665443 466899999999999999987432 1245566665555555443211 0
Q ss_pred HhCCCccccchhhhHHHHHHHHhcCCeEEEEEeCCCCcc--ccchhccc-------cCC---------CCCCcEEEEeec
Q 047930 229 KLGLTLHEETESGRARSLCNRLKKEKRILVILDNIWENL--DFQAVGIP-------HGD---------GHKGSKVLLTAR 290 (395)
Q Consensus 229 ~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~--~~~~l~~~-------l~~---------~~~gs~iivTtR 290 (395)
..............-..+..... +...|+||++.... ....+... ++. .+++.+||+|+.
T Consensus 82 ~~~~~~~~~~~~~~~g~l~~A~~--~g~~lllDEi~r~~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN 159 (262)
T TIGR02640 82 NVVKLEDIVRQNWVDNRLTLAVR--EGFTLVYDEFTRSKPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSN 159 (262)
T ss_pred HhhhhhcccceeecCchHHHHHH--cCCEEEEcchhhCCHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeC
Confidence 00000000000000112333333 24689999997532 21212111 111 124668888887
Q ss_pred chhhh------hhcCCCcceeecCCCChHHHHHHHHHhh
Q 047930 291 SLDVL------SRKMDSQQNFSFDVLKEDEAWSLFKKMA 323 (395)
Q Consensus 291 ~~~va------~~~~~~~~~~~l~~L~~~e~~~lf~~~~ 323 (395)
...-. .........+.+...+.++-.+++.+..
T Consensus 160 ~~~~~g~~~l~~aL~~R~~~i~i~~P~~~~e~~Il~~~~ 198 (262)
T TIGR02640 160 PVEYAGVHETQDALLDRLITIFMDYPDIDTETAILRAKT 198 (262)
T ss_pred CccccceecccHHHHhhcEEEECCCCCHHHHHHHHHHhh
Confidence 53211 1111223456666677777777777664
No 131
>PRK10536 hypothetical protein; Provisional
Probab=97.97 E-value=0.00013 Score=64.55 Aligned_cols=56 Identities=25% Similarity=0.283 Sum_probs=40.3
Q ss_pred cccchhchHHHHHHHHHHhcCCCceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEE
Q 047930 152 DYEAFESRMSTLNDILDALKNPDVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVI 209 (395)
Q Consensus 152 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~ 209 (395)
+..++.++......++.++.+. .++.+.|+.|+|||+||..+..+.-..+.|+.++
T Consensus 53 ~~~~i~p~n~~Q~~~l~al~~~--~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIi 108 (262)
T PRK10536 53 DTSPILARNEAQAHYLKAIESK--QLIFATGEAGCGKTWISAAKAAEALIHKDVDRII 108 (262)
T ss_pred CCccccCCCHHHHHHHHHHhcC--CeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEE
Confidence 3345667777778888888764 4899999999999999999988633223355433
No 132
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.96 E-value=0.00055 Score=67.87 Aligned_cols=156 Identities=20% Similarity=0.262 Sum_probs=91.9
Q ss_pred cchhchHHHHHHHHHHhc------CCCceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHH
Q 047930 154 EAFESRMSTLNDILDALK------NPDVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFA 227 (395)
Q Consensus 154 ~~~~gr~~~~~~l~~~l~------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 227 (395)
.+-+|.++..+.+++.+. +-+-++++.+|++|+|||++++.++.....+ | +-++++.-.+..++-..=-
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRk--F---fRfSvGG~tDvAeIkGHRR 485 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRK--F---FRFSVGGMTDVAEIKGHRR 485 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCc--e---EEEeccccccHHhhcccce
Confidence 445788888899988875 3456899999999999999999999876532 3 2345555544443211100
Q ss_pred HHhCCCccccchhhhHHHHHHHHh--cCCeEEEEEeCCCCcc---------ccchhccccCC----------CCCCcEEE
Q 047930 228 DKLGLTLHEETESGRARSLCNRLK--KEKRILVILDNIWENL---------DFQAVGIPHGD----------GHKGSKVL 286 (395)
Q Consensus 228 ~~l~~~~~~~~~~~~~~~l~~~l~--~~kr~LlVlDdv~~~~---------~~~~l~~~l~~----------~~~gs~ii 286 (395)
.-++ . .-.++.+.|+ +-.+-|+.||+|+..- .+-++..|-.+ .-.=|+|+
T Consensus 486 TYVG-----A----MPGkiIq~LK~v~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLSkVL 556 (906)
T KOG2004|consen 486 TYVG-----A----MPGKIIQCLKKVKTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLSKVL 556 (906)
T ss_pred eeec-----c----CChHHHHHHHhhCCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccchhheE
Confidence 0001 0 1124455554 2456799999996431 11111111110 01135553
Q ss_pred -Eeecc--hhhhhhcCCCcceeecCCCChHHHHHHHHHhh
Q 047930 287 -LTARS--LDVLSRKMDSQQNFSFDVLKEDEAWSLFKKMA 323 (395)
Q Consensus 287 -vTtR~--~~va~~~~~~~~~~~l~~L~~~e~~~lf~~~~ 323 (395)
|.|-| ..++....+.-..|+|.+...+|-..+-.+++
T Consensus 557 FicTAN~idtIP~pLlDRMEvIelsGYv~eEKv~IA~~yL 596 (906)
T KOG2004|consen 557 FICTANVIDTIPPPLLDRMEVIELSGYVAEEKVKIAERYL 596 (906)
T ss_pred EEEeccccccCChhhhhhhheeeccCccHHHHHHHHHHhh
Confidence 33333 23333345666799999999999888887776
No 133
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.93 E-value=0.00014 Score=71.23 Aligned_cols=155 Identities=18% Similarity=0.174 Sum_probs=83.6
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCccccchhhhHHHHHHHHhcC
Q 047930 174 DVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFADKLGLTLHEETESGRARSLCNRLKKE 253 (395)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 253 (395)
.++-|.++|++|+|||.+|+.+.+..... | +-+..+. +.. ..... ....+..+.+.....
T Consensus 258 ~pkGILL~GPpGTGKTllAkaiA~e~~~~--~---~~l~~~~------l~~--------~~vGe-se~~l~~~f~~A~~~ 317 (489)
T CHL00195 258 TPRGLLLVGIQGTGKSLTAKAIANDWQLP--L---LRLDVGK------LFG--------GIVGE-SESRMRQMIRIAEAL 317 (489)
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHhCCC--E---EEEEhHH------hcc--------cccCh-HHHHHHHHHHHHHhc
Confidence 35678899999999999999999876532 2 2222211 110 00001 112233444444446
Q ss_pred CeEEEEEeCCCCccc----c----------chhccccCCCCCCcEEEEeecchhhh-hhc---CCCcceeecCCCChHHH
Q 047930 254 KRILVILDNIWENLD----F----------QAVGIPHGDGHKGSKVLLTARSLDVL-SRK---MDSQQNFSFDVLKEDEA 315 (395)
Q Consensus 254 kr~LlVlDdv~~~~~----~----------~~l~~~l~~~~~gs~iivTtR~~~va-~~~---~~~~~~~~l~~L~~~e~ 315 (395)
.+++|+||+++.... . ..+...+.....+.-||.||...... ... ......+.++.-+.++-
T Consensus 318 ~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR 397 (489)
T CHL00195 318 SPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEER 397 (489)
T ss_pred CCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHH
Confidence 789999999964210 0 01111111223344456677654321 111 12345788888899999
Q ss_pred HHHHHHhhCCCCCCCchHHHHHHHHHHcCCchH
Q 047930 316 WSLFKKMAGDYIEGSEFKWVAREVAKECAGLPV 348 (395)
Q Consensus 316 ~~lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPl 348 (395)
.++|+.++...........-...+++.+.|.--
T Consensus 398 ~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSG 430 (489)
T CHL00195 398 EKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSG 430 (489)
T ss_pred HHHHHHHHhhcCCCcccccCHHHHHhhcCCCCH
Confidence 999998875422111001124567777777643
No 134
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.89 E-value=0.0017 Score=61.42 Aligned_cols=191 Identities=16% Similarity=0.215 Sum_probs=117.9
Q ss_pred hHHHHHHHHHHhcCCCceEEEEEecCCCcHHHHH-HHHHHHhcccCCCCEEEEEEeCC---cCCHHHHHHHHHHHhCCCc
Q 047930 159 RMSTLNDILDALKNPDVNMLGIYGMGGIGKTTLA-KEVARKAENEKLFDQVIFVEVSQ---IQDIRKIQGEFADKLGLTL 234 (395)
Q Consensus 159 r~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa-~~v~~~~~~~~~f~~~~wv~~s~---~~~~~~~~~~i~~~l~~~~ 234 (395)
|.+..++|..||.+..-..|.|.||.|+||+.|+ .++..+.+. ++.+.+.+ ..+-..++..++.++|.-+
T Consensus 1 R~e~~~~L~~wL~e~~~TFIvV~GPrGSGK~elV~d~~L~~r~~------vL~IDC~~i~~ar~D~~~I~~lA~qvGY~P 74 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENPNTFIVVQGPRGSGKRELVMDHVLKDRKN------VLVIDCDQIVKARGDAAFIKNLASQVGYFP 74 (431)
T ss_pred CchHHHHHHHHHhcCCCeEEEEECCCCCCccHHHHHHHHhCCCC------EEEEEChHhhhccChHHHHHHHHHhcCCCc
Confidence 5567889999999888889999999999999999 777765432 55665543 2334556666666654311
Q ss_pred -----------------------cc--cchhhhHH--------HHHH-------------------HHh--cCCeEEEEE
Q 047930 235 -----------------------HE--ETESGRAR--------SLCN-------------------RLK--KEKRILVIL 260 (395)
Q Consensus 235 -----------------------~~--~~~~~~~~--------~l~~-------------------~l~--~~kr~LlVl 260 (395)
.. .+....+. .|++ +|. ...+-+|||
T Consensus 75 vFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~~PVVVI 154 (431)
T PF10443_consen 75 VFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPERRPVVVI 154 (431)
T ss_pred chHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCccCCEEEE
Confidence 00 00000000 1111 010 123679999
Q ss_pred eCCCCcc-----------ccchhccccCCCCCCcEEEEeecchhhh---hhcC--CCcceeecCCCChHHHHHHHHHhhC
Q 047930 261 DNIWENL-----------DFQAVGIPHGDGHKGSKVLLTARSLDVL---SRKM--DSQQNFSFDVLKEDEAWSLFKKMAG 324 (395)
Q Consensus 261 Ddv~~~~-----------~~~~l~~~l~~~~~gs~iivTtR~~~va---~~~~--~~~~~~~l~~L~~~e~~~lf~~~~~ 324 (395)
|+.-... +|... +. ..+-.+||++|-+.... ...+ ...+.+.|...+++.|..+..+++.
T Consensus 155 dnF~~k~~~~~~iy~~laeWAa~---Lv-~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~L~ 230 (431)
T PF10443_consen 155 DNFLHKAEENDFIYDKLAEWAAS---LV-QNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQLD 230 (431)
T ss_pred cchhccCcccchHHHHHHHHHHH---HH-hcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHHhc
Confidence 9985431 34331 11 12344688877764432 1222 3456899999999999999999985
Q ss_pred CCCCC-------------------CchHHHHHHHHHHcCCchHHHHHHHHHhhC
Q 047930 325 DYIEG-------------------SEFKWVAREVAKECAGLPVSIVTVARALRN 359 (395)
Q Consensus 325 ~~~~~-------------------~~~~~~~~~i~~~c~GlPlai~~i~~~l~~ 359 (395)
..... .....-....++.+||=-.=+..+++-++.
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiks 284 (431)
T PF10443_consen 231 EDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKS 284 (431)
T ss_pred ccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHc
Confidence 32110 112234567888899999999988888874
No 135
>PRK04132 replication factor C small subunit; Provisional
Probab=97.88 E-value=0.00042 Score=71.72 Aligned_cols=155 Identities=14% Similarity=0.046 Sum_probs=96.0
Q ss_pred cCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCccccchhhhHHHHHHHHhcCCeEEEEEeC
Q 047930 183 MGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFADKLGLTLHEETESGRARSLCNRLKKEKRILVILDN 262 (395)
Q Consensus 183 ~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDd 262 (395)
|.++||||+|..++++.-....-..++.++++.......+ +++++.+....+. ...+.-++|||+
T Consensus 574 Ph~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgid~I-R~iIk~~a~~~~~--------------~~~~~KVvIIDE 638 (846)
T PRK04132 574 PTVLHNTTAALALARELFGENWRHNFLELNASDERGINVI-REKVKEFARTKPI--------------GGASFKIIFLDE 638 (846)
T ss_pred CCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccHHHH-HHHHHHHHhcCCc--------------CCCCCEEEEEEC
Confidence 7899999999999998633211123677888876555543 3333332111000 012457999999
Q ss_pred CCCcc--ccchhccccCCCCCCcEEEEeecc-hhhhhhcCCCcceeecCCCChHHHHHHHHHhhCCCCCCCchHHHHHHH
Q 047930 263 IWENL--DFQAVGIPHGDGHKGSKVLLTARS-LDVLSRKMDSQQNFSFDVLKEDEAWSLFKKMAGDYIEGSEFKWVAREV 339 (395)
Q Consensus 263 v~~~~--~~~~l~~~l~~~~~gs~iivTtR~-~~va~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i 339 (395)
++... ....+...+-.....+++|+++.+ ..+.....+.+..+++.++++++....+...+......-+ .+....|
T Consensus 639 aD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~i~-~e~L~~I 717 (846)
T PRK04132 639 ADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELT-EEGLQAI 717 (846)
T ss_pred cccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCCCC-HHHHHHH
Confidence 98663 445554444333345666666655 3443334456779999999999999888877643221111 3367899
Q ss_pred HHHcCCchHHHHHH
Q 047930 340 AKECAGLPVSIVTV 353 (395)
Q Consensus 340 ~~~c~GlPlai~~i 353 (395)
++.|+|.+-....+
T Consensus 718 a~~s~GDlR~AIn~ 731 (846)
T PRK04132 718 LYIAEGDMRRAINI 731 (846)
T ss_pred HHHcCCCHHHHHHH
Confidence 99999988544433
No 136
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.87 E-value=0.00039 Score=67.73 Aligned_cols=172 Identities=19% Similarity=0.244 Sum_probs=94.5
Q ss_pred ccchhchHHHHHHHHHHhc---CC---------CceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHH
Q 047930 153 YEAFESRMSTLNDILDALK---NP---------DVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIR 220 (395)
Q Consensus 153 ~~~~~gr~~~~~~l~~~l~---~~---------~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~ 220 (395)
...+-|.+..+.+|.+.+. .+ .++-+.+||++|+|||.||+.++++..+. |+.++.+
T Consensus 189 f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vP-------f~~isAp---- 257 (802)
T KOG0733|consen 189 FSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVP-------FLSISAP---- 257 (802)
T ss_pred hhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCc-------eEeecch----
Confidence 4455666766666655443 21 34567799999999999999999988754 3333322
Q ss_pred HHHHHHHHHhCCCccccchhhhHHHHHHHHhcCCeEEEEEeCCCCcc---ccc----------hhc---cccCC-CCCCc
Q 047930 221 KIQGEFADKLGLTLHEETESGRARSLCNRLKKEKRILVILDNIWENL---DFQ----------AVG---IPHGD-GHKGS 283 (395)
Q Consensus 221 ~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~---~~~----------~l~---~~l~~-~~~gs 283 (395)
+|+..+.. .....+..+.+.-.+.-+++++||+++-.. +|. .+. .-+.. ...|-
T Consensus 258 ----eivSGvSG-----ESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~ 328 (802)
T KOG0733|consen 258 ----EIVSGVSG-----ESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGD 328 (802)
T ss_pred ----hhhcccCc-----ccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCC
Confidence 22222211 122345566666666789999999996431 111 111 11111 11122
Q ss_pred EEEE---eecchhhh---hhcCCCcceeecCCCChHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCc
Q 047930 284 KVLL---TARSLDVL---SRKMDSQQNFSFDVLKEDEAWSLFKKMAGDYIEGSEFKWVAREVAKECAGL 346 (395)
Q Consensus 284 ~iiv---TtR~~~va---~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~Gl 346 (395)
.|+| |+|-..+- .+.....+.|.|.--++..-.+++.....+-..+..+. -++|++..-|.
T Consensus 329 ~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d--~~qlA~lTPGf 395 (802)
T KOG0733|consen 329 PVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFD--FKQLAKLTPGF 395 (802)
T ss_pred CeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcC--HHHHHhcCCCc
Confidence 3333 44433321 12223345677877777777777776664333333222 35677777665
No 137
>PRK08116 hypothetical protein; Validated
Probab=97.84 E-value=7.4e-05 Score=67.73 Aligned_cols=101 Identities=22% Similarity=0.215 Sum_probs=59.8
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCccccchhhhHHHHHHHHhcCCe
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFADKLGLTLHEETESGRARSLCNRLKKEKR 255 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr 255 (395)
..+.++|..|+|||.||..+++....+ ...+++++ ..+++..+........ ......+.+.+.. -
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~--~~~v~~~~------~~~ll~~i~~~~~~~~-----~~~~~~~~~~l~~--~ 179 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEK--GVPVIFVN------FPQLLNRIKSTYKSSG-----KEDENEIIRSLVN--A 179 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEE------HHHHHHHHHHHHhccc-----cccHHHHHHHhcC--C
Confidence 357899999999999999999987643 33456664 4455666655543211 1112344555542 2
Q ss_pred EEEEEeCCC--Cccccch--hccccCC-CCCCcEEEEeecc
Q 047930 256 ILVILDNIW--ENLDFQA--VGIPHGD-GHKGSKVLLTARS 291 (395)
Q Consensus 256 ~LlVlDdv~--~~~~~~~--l~~~l~~-~~~gs~iivTtR~ 291 (395)
=||||||+. ...+|.. +...+.. -.++..+|+||..
T Consensus 180 dlLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~ 220 (268)
T PRK08116 180 DLLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNL 220 (268)
T ss_pred CEEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 389999994 3344432 2222211 1245568888874
No 138
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.84 E-value=0.00039 Score=67.62 Aligned_cols=178 Identities=9% Similarity=0.091 Sum_probs=100.9
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCccccchhhhHHHHHHHHhcCCe
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFADKLGLTLHEETESGRARSLCNRLKKEKR 255 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr 255 (395)
.-+.|+|+.|+|||+|++.+++..... ...+++++ ...+...+...+... ....+.+.+. +.
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~--~~~v~yi~------~~~f~~~~~~~l~~~--------~~~~f~~~~~--~~ 203 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRES--GGKILYVR------SELFTEHLVSAIRSG--------EMQRFRQFYR--NV 203 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHc--CCCEEEee------HHHHHHHHHHHHhcc--------hHHHHHHHcc--cC
Confidence 457899999999999999999986532 22345554 334445555554321 1122333332 34
Q ss_pred EEEEEeCCCCccc--c--chhccccCC-CCCCcEEEEeecchh-----hh---hhcCCCcceeecCCCChHHHHHHHHHh
Q 047930 256 ILVILDNIWENLD--F--QAVGIPHGD-GHKGSKVLLTARSLD-----VL---SRKMDSQQNFSFDVLKEDEAWSLFKKM 322 (395)
Q Consensus 256 ~LlVlDdv~~~~~--~--~~l~~~l~~-~~~gs~iivTtR~~~-----va---~~~~~~~~~~~l~~L~~~e~~~lf~~~ 322 (395)
-+|+|||+..... + +.+...+.. ...|..||+||.... +. .........+.+.+++.++...++.+.
T Consensus 204 dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k 283 (445)
T PRK12422 204 DALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERK 283 (445)
T ss_pred CEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHH
Confidence 5899999865421 1 122222210 113556888885421 11 112334568999999999999999988
Q ss_pred hCCCCCCCchHHHHHHHHHHcCCch-HHHHHHHHH--------hhCC--CHHHHHHHHHHh
Q 047930 323 AGDYIEGSEFKWVAREVAKECAGLP-VSIVTVARA--------LRNK--RLFEWKDALEQL 372 (395)
Q Consensus 323 ~~~~~~~~~~~~~~~~i~~~c~GlP-lai~~i~~~--------l~~~--~~~~w~~~l~~l 372 (395)
+..... .--.++..-|+..+.|.- -.+..+-.+ +.+. +.+.-+.++..+
T Consensus 284 ~~~~~~-~l~~evl~~la~~~~~dir~L~g~l~~l~~~~a~~~~~~~~i~~~~~~~~l~~~ 343 (445)
T PRK12422 284 AEALSI-RIEETALDFLIEALSSNVKSLLHALTLLAKRVAYKKLSHQLLYVDDIKALLHDV 343 (445)
T ss_pred HHHcCC-CCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHh
Confidence 853221 112346666777776553 332222222 1122 677777777765
No 139
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.82 E-value=0.00031 Score=61.43 Aligned_cols=172 Identities=20% Similarity=0.303 Sum_probs=100.6
Q ss_pred ccchhchHHHHHH---HHHHhcCC------CceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHH
Q 047930 153 YEAFESRMSTLND---ILDALKNP------DVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQ 223 (395)
Q Consensus 153 ~~~~~gr~~~~~~---l~~~l~~~------~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~ 223 (395)
..+.+|.++...+ |+..|.++ .++.|..+|++|+|||.+|+.+.+..++. | +.+. ..+++
T Consensus 120 ~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp--~-----l~vk----at~li 188 (368)
T COG1223 120 LDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVP--L-----LLVK----ATELI 188 (368)
T ss_pred HhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCc--e-----EEec----hHHHH
Confidence 3456777665543 56666644 37889999999999999999999987753 2 2221 12222
Q ss_pred HHHHHHhCCCccccchhhhHHHHHHHHhcCCeEEEEEeCCCCcc---ccc-----------hhcccc--CCCCCCcEEEE
Q 047930 224 GEFADKLGLTLHEETESGRARSLCNRLKKEKRILVILDNIWENL---DFQ-----------AVGIPH--GDGHKGSKVLL 287 (395)
Q Consensus 224 ~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~---~~~-----------~l~~~l--~~~~~gs~iiv 287 (395)
.+ ..| .....+.++.++..+--+|+++||.++... .++ .+.--+ ...+.|...|-
T Consensus 189 Ge---hVG------dgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIa 259 (368)
T COG1223 189 GE---HVG------DGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIA 259 (368)
T ss_pred HH---Hhh------hHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEe
Confidence 21 111 123345566666666679999999986431 111 111111 12345666666
Q ss_pred eecchhhhhhc--CCCcceeecCCCChHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCc
Q 047930 288 TARSLDVLSRK--MDSQQNFSFDVLKEDEAWSLFKKMAGDYIEGSEFKWVAREVAKECAGL 346 (395)
Q Consensus 288 TtR~~~va~~~--~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~Gl 346 (395)
.|.+....... ......|+..--+++|-.+++...+..-..+.+. -.+.++++.+|+
T Consensus 260 aTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~--~~~~~~~~t~g~ 318 (368)
T COG1223 260 ATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVDA--DLRYLAAKTKGM 318 (368)
T ss_pred ecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCcccc--CHHHHHHHhCCC
Confidence 66665443111 1223467788788899999998887432222211 145667777765
No 140
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.82 E-value=0.00078 Score=63.00 Aligned_cols=175 Identities=11% Similarity=0.030 Sum_probs=98.3
Q ss_pred HHHHHHHhcCCC-ceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCC-----cc-
Q 047930 163 LNDILDALKNPD-VNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFADKLGLT-----LH- 235 (395)
Q Consensus 163 ~~~l~~~l~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~-----~~- 235 (395)
-+++...+..++ ..-+.+.|+.|+||+++|..+....-.....+.. .+... .-.+.+...-..+ ..
T Consensus 11 ~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~---~Cg~C----~sC~~~~~g~HPD~~~i~p~~ 83 (334)
T PRK07993 11 YEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHK---SCGHC----RGCQLMQAGTHPDYYTLTPEK 83 (334)
T ss_pred HHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCC---CCCCC----HHHHHHHcCCCCCEEEEeccc
Confidence 456666666544 4667799999999999999988765322111000 00000 0000010000000 00
Q ss_pred --ccchhhhHHHHHHHHh----cCCeEEEEEeCCCCc--cccchhccccCCCCCCcEEEEeecc-hhhhhhcCCCcceee
Q 047930 236 --EETESGRARSLCNRLK----KEKRILVILDNIWEN--LDFQAVGIPHGDGHKGSKVLLTARS-LDVLSRKMDSQQNFS 306 (395)
Q Consensus 236 --~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR~-~~va~~~~~~~~~~~ 306 (395)
..-..+.+..+.+.+. .+++-++|||+++.. ..-+.+...+-....++.+|++|.+ ..+.....+....+.
T Consensus 84 ~~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRCq~~~ 163 (334)
T PRK07993 84 GKSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRCRLHY 163 (334)
T ss_pred ccccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcccccc
Confidence 0011223334444442 256779999999754 3445555555444456666666665 445544456677899
Q ss_pred cCCCChHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHHH
Q 047930 307 FDVLKEDEAWSLFKKMAGDYIEGSEFKWVAREVAKECAGLPVSI 350 (395)
Q Consensus 307 l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai 350 (395)
+.++++++....+....+ .++ +.+..++..++|.|...
T Consensus 164 ~~~~~~~~~~~~L~~~~~---~~~---~~a~~~~~la~G~~~~A 201 (334)
T PRK07993 164 LAPPPEQYALTWLSREVT---MSQ---DALLAALRLSAGAPGAA 201 (334)
T ss_pred CCCCCHHHHHHHHHHccC---CCH---HHHHHHHHHcCCCHHHH
Confidence 999999999988865432 111 23567899999999743
No 141
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.82 E-value=0.00032 Score=72.83 Aligned_cols=158 Identities=18% Similarity=0.225 Sum_probs=90.1
Q ss_pred cchhchHHHHHHHHHHhc------CCCceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHH
Q 047930 154 EAFESRMSTLNDILDALK------NPDVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFA 227 (395)
Q Consensus 154 ~~~~gr~~~~~~l~~~l~------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 227 (395)
...+|.+...+.+++++. .....++.++|++|+||||+++.+....... | +-++.+...+..++...-.
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~--~---~~i~~~~~~d~~~i~g~~~ 396 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRK--Y---VRMALGGVRDEAEIRGHRR 396 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhCCC--E---EEEEcCCCCCHHHhccchh
Confidence 346788888888888775 2345689999999999999999999865421 2 2233444333332221111
Q ss_pred HHhCCCccccchhhhHHHHHHHHhcCCeEEEEEeCCCCccc------cchhccccC---------------CCCCCcEEE
Q 047930 228 DKLGLTLHEETESGRARSLCNRLKKEKRILVILDNIWENLD------FQAVGIPHG---------------DGHKGSKVL 286 (395)
Q Consensus 228 ~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~------~~~l~~~l~---------------~~~~gs~ii 286 (395)
...+. ........+.. .. ...-+++||+++.... ...+...+. ..-.+.-+|
T Consensus 397 ~~~g~-----~~G~~~~~l~~-~~-~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i 469 (784)
T PRK10787 397 TYIGS-----MPGKLIQKMAK-VG-VKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFV 469 (784)
T ss_pred ccCCC-----CCcHHHHHHHh-cC-CCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEEE
Confidence 11111 01111222211 11 2345789999964321 111221111 111344456
Q ss_pred EeecchhhhhhcCCCcceeecCCCChHHHHHHHHHhh
Q 047930 287 LTARSLDVLSRKMDSQQNFSFDVLKEDEAWSLFKKMA 323 (395)
Q Consensus 287 vTtR~~~va~~~~~~~~~~~l~~L~~~e~~~lf~~~~ 323 (395)
.|+.+..+.....+...++++.+++++|-.++.++++
T Consensus 470 ~TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 470 ATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred EcCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhh
Confidence 6666555544455667789999999999999888776
No 142
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=97.81 E-value=0.0017 Score=60.78 Aligned_cols=101 Identities=16% Similarity=0.177 Sum_probs=65.0
Q ss_pred hHHHHHHHHh----cCCeEEEEEeCCCCc--cccchhccccCCCCCCcEEEEeecc-hhhhhhcCCCcceeecCCCChHH
Q 047930 242 RARSLCNRLK----KEKRILVILDNIWEN--LDFQAVGIPHGDGHKGSKVLLTARS-LDVLSRKMDSQQNFSFDVLKEDE 314 (395)
Q Consensus 242 ~~~~l~~~l~----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR~-~~va~~~~~~~~~~~l~~L~~~e 314 (395)
.+..+.+.+. .+++-++|||+++.. ...+.+...+-...+++.+|++|.+ ..+.....+....+.+.+++.++
T Consensus 116 qiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~ 195 (342)
T PRK06964 116 QVRALLDFCGVGTHRGGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEA 195 (342)
T ss_pred HHHHHHHHhccCCccCCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHH
Confidence 3444445443 245568899999755 4566665555444556666655555 55554455667899999999999
Q ss_pred HHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHHHH
Q 047930 315 AWSLFKKMAGDYIEGSEFKWVAREVAKECAGLPVSIV 351 (395)
Q Consensus 315 ~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~ 351 (395)
..+.+.... . ++ ...++..++|.|+...
T Consensus 196 ~~~~L~~~~---~-~~-----~~~~l~~~~Gsp~~Al 223 (342)
T PRK06964 196 AAAWLAAQG---V-AD-----ADALLAEAGGAPLAAL 223 (342)
T ss_pred HHHHHHHcC---C-Ch-----HHHHHHHcCCCHHHHH
Confidence 999987751 1 11 1235778899997544
No 143
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.79 E-value=0.00054 Score=69.22 Aligned_cols=191 Identities=23% Similarity=0.220 Sum_probs=114.9
Q ss_pred HHHHHHHHHHhcCC---------CceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHHHHh
Q 047930 160 MSTLNDILDALKNP---------DVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFADKL 230 (395)
Q Consensus 160 ~~~~~~l~~~l~~~---------~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l 230 (395)
.+|++++++.|.++ -++=+.++|++|+|||-||+.++-...+. |++++.. + .++-+
T Consensus 320 K~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVP-------F~svSGS----E----FvE~~ 384 (774)
T KOG0731|consen 320 KEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVP-------FFSVSGS----E----FVEMF 384 (774)
T ss_pred HHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCc-------eeeechH----H----HHHHh
Confidence 45677778888753 25667899999999999999999887754 4455442 1 11111
Q ss_pred CCCccccchhhhHHHHHHHHhcCCeEEEEEeCCCCccc-----------------cchhccccCCCC---CCcEEEEeec
Q 047930 231 GLTLHEETESGRARSLCNRLKKEKRILVILDNIWENLD-----------------FQAVGIPHGDGH---KGSKVLLTAR 290 (395)
Q Consensus 231 ~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~-----------------~~~l~~~l~~~~---~gs~iivTtR 290 (395)
... ....+..+....+...++++.+|+++.... ++.+..-+ ++. .+.-++-+|+
T Consensus 385 ~g~-----~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~em-Dgf~~~~~vi~~a~tn 458 (774)
T KOG0731|consen 385 VGV-----GASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEM-DGFETSKGVIVLAATN 458 (774)
T ss_pred ccc-----chHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHh-cCCcCCCcEEEEeccC
Confidence 110 123455666666667889999999864311 11221111 221 2233344555
Q ss_pred chhhhhhc----CCCcceeecCCCChHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHHHHHH----HHHhh--C-
Q 047930 291 SLDVLSRK----MDSQQNFSFDVLKEDEAWSLFKKMAGDYIEGSEFKWVAREVAKECAGLPVSIVTV----ARALR--N- 359 (395)
Q Consensus 291 ~~~va~~~----~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~i----~~~l~--~- 359 (395)
..++.+.. ..-...+.++.-+.....++|.-++.....+.+..++++ |+....|.+=|...- +.++. +
T Consensus 459 r~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~-~a~~t~gf~gadl~n~~neaa~~a~r~~ 537 (774)
T KOG0731|consen 459 RPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSK-LASLTPGFSGADLANLCNEAALLAARKG 537 (774)
T ss_pred CccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHH-HHhcCCCCcHHHHHhhhhHHHHHHHHhc
Confidence 55543211 123457888888888999999999865544455566677 999999988765433 23332 1
Q ss_pred ---CCHHHHHHHHHHh
Q 047930 360 ---KRLFEWKDALEQL 372 (395)
Q Consensus 360 ---~~~~~w~~~l~~l 372 (395)
-+..+...+++++
T Consensus 538 ~~~i~~~~~~~a~~Rv 553 (774)
T KOG0731|consen 538 LREIGTKDLEYAIERV 553 (774)
T ss_pred cCccchhhHHHHHHHH
Confidence 1556666666643
No 144
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.77 E-value=0.00052 Score=71.78 Aligned_cols=157 Identities=22% Similarity=0.240 Sum_probs=82.3
Q ss_pred chhchHHHHHHHHHHhc------CCCceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHHH
Q 047930 155 AFESRMSTLNDILDALK------NPDVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFAD 228 (395)
Q Consensus 155 ~~~gr~~~~~~l~~~l~------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 228 (395)
.++|.+...+.+.+++. ..+.+++.++|++|+|||++|+.+.+..... | +-++++...+..++...
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~--~---~~i~~~~~~~~~~i~g~--- 392 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALNRK--F---VRFSLGGVRDEAEIRGH--- 392 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhcCC--e---EEEeCCCcccHHHHcCC---
Confidence 35677777777777553 2234579999999999999999999886432 3 22333333233222110
Q ss_pred HhCCCccccchhhhHHHHHHHHhcCCeEEEEEeCCCCccc------cchhcc--------ccCCC-------CCCcEEEE
Q 047930 229 KLGLTLHEETESGRARSLCNRLKKEKRILVILDNIWENLD------FQAVGI--------PHGDG-------HKGSKVLL 287 (395)
Q Consensus 229 ~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~------~~~l~~--------~l~~~-------~~gs~iiv 287 (395)
...............+.. .. ..+-+|+||+++.... ...+.. .|.+. ..+..+|.
T Consensus 393 --~~~~~g~~~g~i~~~l~~-~~-~~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I~ 468 (775)
T TIGR00763 393 --RRTYVGAMPGRIIQGLKK-AK-TKNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFIA 468 (775)
T ss_pred --CCceeCCCCchHHHHHHH-hC-cCCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceeccCCEEEEE
Confidence 000001111111222222 12 2345889999865421 011111 11111 12333445
Q ss_pred eecchh-hhhhcCCCcceeecCCCChHHHHHHHHHhh
Q 047930 288 TARSLD-VLSRKMDSQQNFSFDVLKEDEAWSLFKKMA 323 (395)
Q Consensus 288 TtR~~~-va~~~~~~~~~~~l~~L~~~e~~~lf~~~~ 323 (395)
||.... +..........+++.+++.++-.+++++..
T Consensus 469 TtN~~~~i~~~L~~R~~vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 469 TANSIDTIPRPLLDRMEVIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred ecCCchhCCHHHhCCeeEEecCCCCHHHHHHHHHHHH
Confidence 554432 222334555689999999999988887654
No 145
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=97.75 E-value=0.00022 Score=71.15 Aligned_cols=49 Identities=29% Similarity=0.447 Sum_probs=40.0
Q ss_pred ccccchhchHHHHHHHHHHhcCCCceEEEEEecCCCcHHHHHHHHHHHh
Q 047930 151 KDYEAFESRMSTLNDILDALKNPDVNMLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 151 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
.....++|.+..++.+...+..+....+.|+|+.|+|||++|+.+++..
T Consensus 62 ~~f~~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 110 (531)
T TIGR02902 62 KSFDEIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEA 110 (531)
T ss_pred CCHHHeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 4455688998888888877766666677899999999999999998753
No 146
>PRK08118 topology modulation protein; Reviewed
Probab=97.75 E-value=1.9e-05 Score=66.29 Aligned_cols=34 Identities=29% Similarity=0.531 Sum_probs=28.1
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhccc-CCCCEEEE
Q 047930 177 MLGIYGMGGIGKTTLAKEVARKAENE-KLFDQVIF 210 (395)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~~~~-~~f~~~~w 210 (395)
-|.|+|++|+||||||+.+++..... -+||..+|
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 48899999999999999999986654 35677775
No 147
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.74 E-value=0.0015 Score=57.68 Aligned_cols=207 Identities=15% Similarity=0.128 Sum_probs=116.3
Q ss_pred ccchhchHHHHHHHHHHhcCCCceEEEEEecCCCcHHHHHHHHHHHhccc----CCCCEEEEEEeCCc----------C-
Q 047930 153 YEAFESRMSTLNDILDALKNPDVNMLGIYGMGGIGKTTLAKEVARKAENE----KLFDQVIFVEVSQI----------Q- 217 (395)
Q Consensus 153 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~----~~f~~~~wv~~s~~----------~- 217 (395)
.....++++.-..+......+..+...++|++|.||-|.+..+.+..-.. -.-+...|.+-|.. +
T Consensus 12 l~~l~~~~e~~~~Lksl~~~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yH 91 (351)
T KOG2035|consen 12 LDELIYHEELANLLKSLSSTGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYH 91 (351)
T ss_pred hhhcccHHHHHHHHHHhcccCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccce
Confidence 34455666666666665556778899999999999999888887764321 12334455543332 1
Q ss_pred ----------CHHHHHHHHHHHhCCCccccchhhhHHHHHHHHhcCCeE-EEEEeCCCCc--cccchhccccCCCCCCcE
Q 047930 218 ----------DIRKIQGEFADKLGLTLHEETESGRARSLCNRLKKEKRI-LVILDNIWEN--LDFQAVGIPHGDGHKGSK 284 (395)
Q Consensus 218 ----------~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~-LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ 284 (395)
.-+-+.++++++.....+-+. ...+.| ++||-.+++. +.-..+......-.+.+|
T Consensus 92 lEitPSDaG~~DRvViQellKevAQt~qie~------------~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~~R 159 (351)
T KOG2035|consen 92 LEITPSDAGNYDRVVIQELLKEVAQTQQIET------------QGQRPFKVVVINEADELTRDAQHALRRTMEKYSSNCR 159 (351)
T ss_pred EEeChhhcCcccHHHHHHHHHHHHhhcchhh------------ccccceEEEEEechHhhhHHHHHHHHHHHHHHhcCce
Confidence 112344444444432211110 113445 4556555443 121223222222334667
Q ss_pred EEEeecchh-hhhhcCCCcceeecCCCChHHHHHHHHHhhCCCC-CCCchHHHHHHHHHHcCCchHHHHHHHHHhh--C-
Q 047930 285 VLLTARSLD-VLSRKMDSQQNFSFDVLKEDEAWSLFKKMAGDYI-EGSEFKWVAREVAKECAGLPVSIVTVARALR--N- 359 (395)
Q Consensus 285 iivTtR~~~-va~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~-~~~~~~~~~~~i~~~c~GlPlai~~i~~~l~--~- 359 (395)
+|+...+.. +-...-...-.+++...+++|....+++.+.... .-| ++++.+|+++|+|.---...+-..++ +
T Consensus 160 lIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp--~~~l~rIa~kS~~nLRrAllmlE~~~~~n~ 237 (351)
T KOG2035|consen 160 LILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLP--KELLKRIAEKSNRNLRRALLMLEAVRVNNE 237 (351)
T ss_pred EEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCc--HHHHHHHHHHhcccHHHHHHHHHHHHhccc
Confidence 777544321 1111223445789999999999999999885322 222 56899999999998554434433332 1
Q ss_pred ------C--CHHHHHHHHHHhc
Q 047930 360 ------K--RLFEWKDALEQLR 373 (395)
Q Consensus 360 ------~--~~~~w~~~l~~l~ 373 (395)
. +.-+|+-++.++.
T Consensus 238 ~~~a~~~~i~~~dWe~~i~e~a 259 (351)
T KOG2035|consen 238 PFTANSQVIPKPDWEIYIQEIA 259 (351)
T ss_pred cccccCCCCCCccHHHHHHHHH
Confidence 1 4568998887754
No 148
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.72 E-value=0.0004 Score=72.31 Aligned_cols=175 Identities=17% Similarity=0.194 Sum_probs=92.4
Q ss_pred cccchhchHHHHHHHHHHhc----C---------CCceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCC
Q 047930 152 DYEAFESRMSTLNDILDALK----N---------PDVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQD 218 (395)
Q Consensus 152 ~~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~ 218 (395)
...++.|.+..++++.+.+. . ...+.+.++|++|+|||+||+.+++..... | +.++.+
T Consensus 176 ~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~--~---i~i~~~---- 246 (733)
T TIGR01243 176 TYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAY--F---ISINGP---- 246 (733)
T ss_pred CHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCe--E---EEEecH----
Confidence 34457788887777766542 1 234568899999999999999999876421 2 223221
Q ss_pred HHHHHHHHHHHhCCCccccchhhhHHHHHHHHhcCCeEEEEEeCCCCcc--------c-----cchhccccCC-CCCCcE
Q 047930 219 IRKIQGEFADKLGLTLHEETESGRARSLCNRLKKEKRILVILDNIWENL--------D-----FQAVGIPHGD-GHKGSK 284 (395)
Q Consensus 219 ~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~--------~-----~~~l~~~l~~-~~~gs~ 284 (395)
++. ... .. .....+..+.+......+.+|+|||++... . ...+...+.. ...+..
T Consensus 247 --~i~----~~~----~g-~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~v 315 (733)
T TIGR01243 247 --EIM----SKY----YG-ESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRV 315 (733)
T ss_pred --HHh----ccc----cc-HHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCE
Confidence 111 000 00 011223344444444567899999985421 0 1112111111 122333
Q ss_pred EEE-eecchh-hhhhcC---CCcceeecCCCChHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchH
Q 047930 285 VLL-TARSLD-VLSRKM---DSQQNFSFDVLKEDEAWSLFKKMAGDYIEGSEFKWVAREVAKECAGLPV 348 (395)
Q Consensus 285 iiv-TtR~~~-va~~~~---~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPl 348 (395)
++| ||.... +..... .....+.+...+.++-.+++..........++. ....+++.+.|..-
T Consensus 316 ivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~--~l~~la~~t~G~~g 382 (733)
T TIGR01243 316 IVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDV--DLDKLAEVTHGFVG 382 (733)
T ss_pred EEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCcccc--CHHHHHHhCCCCCH
Confidence 444 444322 111111 123467888888888888888665432222111 24678888888753
No 149
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.71 E-value=0.00042 Score=72.79 Aligned_cols=46 Identities=22% Similarity=0.345 Sum_probs=34.8
Q ss_pred chhchHHHHHHHHHHhc-------CC--CceEEEEEecCCCcHHHHHHHHHHHhc
Q 047930 155 AFESRMSTLNDILDALK-------NP--DVNMLGIYGMGGIGKTTLAKEVARKAE 200 (395)
Q Consensus 155 ~~~gr~~~~~~l~~~l~-------~~--~~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (395)
.++|.+..++.+.+.+. .+ ...++.++|+.|+|||.||+.+.....
T Consensus 567 ~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~ 621 (852)
T TIGR03345 567 RVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLY 621 (852)
T ss_pred eEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 45677777777777653 12 235789999999999999999987753
No 150
>PHA00729 NTP-binding motif containing protein
Probab=97.70 E-value=0.00041 Score=60.42 Aligned_cols=35 Identities=40% Similarity=0.482 Sum_probs=28.4
Q ss_pred HHHHHhcCCCceEEEEEecCCCcHHHHHHHHHHHh
Q 047930 165 DILDALKNPDVNMLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 165 ~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
.++..+...+...|.|.|.+|+||||||..+.+..
T Consensus 7 ~~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~l 41 (226)
T PHA00729 7 KIVSAYNNNGFVSAVIFGKQGSGKTTYALKVARDV 41 (226)
T ss_pred HHHHHHhcCCeEEEEEECCCCCCHHHHHHHHHHHH
Confidence 34455556666789999999999999999999875
No 151
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.68 E-value=0.00088 Score=65.96 Aligned_cols=151 Identities=19% Similarity=0.217 Sum_probs=79.5
Q ss_pred CCceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCccccchhhhHHHHHHHHhc
Q 047930 173 PDVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFADKLGLTLHEETESGRARSLCNRLKK 252 (395)
Q Consensus 173 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 252 (395)
..++-|..+|++|+|||++|+.+.+..... |++++.+ +++.... .. ....+..+.+.-.+
T Consensus 466 ~ppkGVLlyGPPGC~KT~lAkalAne~~~n-------Flsvkgp----EL~sk~v--------Ge-SEr~ir~iF~kAR~ 525 (693)
T KOG0730|consen 466 SPPKGVLLYGPPGCGKTLLAKALANEAGMN-------FLSVKGP----ELFSKYV--------GE-SERAIREVFRKARQ 525 (693)
T ss_pred CCCceEEEECCCCcchHHHHHHHhhhhcCC-------eeeccCH----HHHHHhc--------Cc-hHHHHHHHHHHHhh
Confidence 356778899999999999999999987654 3444332 1111111 11 11233444444444
Q ss_pred CCeEEEEEeCCCCccc-------------cchhccccCCCC-CCcEEEE---eecchhhhhhcCC---CcceeecCCCCh
Q 047930 253 EKRILVILDNIWENLD-------------FQAVGIPHGDGH-KGSKVLL---TARSLDVLSRKMD---SQQNFSFDVLKE 312 (395)
Q Consensus 253 ~kr~LlVlDdv~~~~~-------------~~~l~~~l~~~~-~gs~iiv---TtR~~~va~~~~~---~~~~~~l~~L~~ 312 (395)
--+++|+||+++.... +..+..-+ ++. ....|+| |.|...+-...+. ....+.+++-+.
T Consensus 526 ~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEm-DG~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~ 604 (693)
T KOG0730|consen 526 VAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEM-DGLEALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDL 604 (693)
T ss_pred cCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHc-ccccccCcEEEEeccCChhhcCHHHcCCcccceeEeecCccH
Confidence 5679999999865411 11111111 222 1223433 3343332222333 345666766666
Q ss_pred HHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCc
Q 047930 313 DEAWSLFKKMAGDYIEGSEFKWVAREVAKECAGL 346 (395)
Q Consensus 313 ~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~Gl 346 (395)
+.-.++|+.++..-.-+++. -.++|+++..|.
T Consensus 605 ~aR~~Ilk~~~kkmp~~~~v--dl~~La~~T~g~ 636 (693)
T KOG0730|consen 605 EARLEILKQCAKKMPFSEDV--DLEELAQATEGY 636 (693)
T ss_pred HHHHHHHHHHHhcCCCCccc--cHHHHHHHhccC
Confidence 77789999988543332221 133455554444
No 152
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.67 E-value=8.9e-05 Score=65.26 Aligned_cols=35 Identities=31% Similarity=0.459 Sum_probs=28.5
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEe
Q 047930 177 MLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEV 213 (395)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~ 213 (395)
.++|+|.+|+|||||+..+...... .|.++++++-
T Consensus 15 r~viIG~sGSGKT~li~~lL~~~~~--~f~~I~l~t~ 49 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYYLRH--KFDHIFLITP 49 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhcc--cCCEEEEEec
Confidence 5779999999999999999987663 4877766654
No 153
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.65 E-value=0.00042 Score=64.82 Aligned_cols=100 Identities=12% Similarity=0.183 Sum_probs=64.2
Q ss_pred HHHHHHhcC-CCceEEEEEecCCCcHHHHHHHHHHHhcccCCCCE-EEEEEeCC-cCCHHHHHHHHHHHhCCCccccchh
Q 047930 164 NDILDALKN-PDVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQ-VIFVEVSQ-IQDIRKIQGEFADKLGLTLHEETES 240 (395)
Q Consensus 164 ~~l~~~l~~-~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~-~~wv~~s~-~~~~~~~~~~i~~~l~~~~~~~~~~ 240 (395)
.++++.+.. ..-.-+.|+|..|+|||||++.+.+....+ +-+. ++|+.+.+ ...+.++++.+...+.....+.+..
T Consensus 121 ~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~~~-~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~~~ 199 (380)
T PRK12608 121 MRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVAAN-HPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRPPD 199 (380)
T ss_pred HhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHHhc-CCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCCHH
Confidence 346666652 222346899999999999999999876543 3344 46767765 4567888888887765433221111
Q ss_pred h------hHHHHHHHH-hcCCeEEEEEeCCC
Q 047930 241 G------RARSLCNRL-KKEKRILVILDNIW 264 (395)
Q Consensus 241 ~------~~~~l~~~l-~~~kr~LlVlDdv~ 264 (395)
. .+..+.+++ .++++.+||+|++.
T Consensus 200 ~~~~v~~~~~~~Ae~f~~~GkdVVLvlDslt 230 (380)
T PRK12608 200 EHIRVAELVLERAKRLVEQGKDVVILLDSLT 230 (380)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEEeCcH
Confidence 1 122333333 35899999999984
No 154
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.64 E-value=0.0011 Score=68.99 Aligned_cols=151 Identities=18% Similarity=0.210 Sum_probs=83.7
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCccccchhhhHHHHHHHHhcCC
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFADKLGLTLHEETESGRARSLCNRLKKEK 254 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 254 (395)
.+-+.++|++|+|||+||+.+++..... | +.+... ++ .... ... ....+..+.+......
T Consensus 487 ~~giLL~GppGtGKT~lakalA~e~~~~--f-----i~v~~~----~l----~~~~----vGe-se~~i~~~f~~A~~~~ 546 (733)
T TIGR01243 487 PKGVLLFGPPGTGKTLLAKAVATESGAN--F-----IAVRGP----EI----LSKW----VGE-SEKAIREIFRKARQAA 546 (733)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhcCCC--E-----EEEehH----HH----hhcc----cCc-HHHHHHHHHHHHHhcC
Confidence 4558899999999999999999986532 2 222211 11 1111 011 1123445555554467
Q ss_pred eEEEEEeCCCCcc--------c------cchhccccCC--CCCCcEEEEeecchhhh-hhcC---CCcceeecCCCChHH
Q 047930 255 RILVILDNIWENL--------D------FQAVGIPHGD--GHKGSKVLLTARSLDVL-SRKM---DSQQNFSFDVLKEDE 314 (395)
Q Consensus 255 r~LlVlDdv~~~~--------~------~~~l~~~l~~--~~~gs~iivTtR~~~va-~~~~---~~~~~~~l~~L~~~e 314 (395)
+.+|+||+++... . ...+...+.. ...+.-||.||...... .... .....+.++..+.++
T Consensus 547 p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~ 626 (733)
T TIGR01243 547 PAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEA 626 (733)
T ss_pred CEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHH
Confidence 8999999986421 0 0112111111 12344566666554332 1111 234578888889999
Q ss_pred HHHHHHHhhCCCCCCCchHHHHHHHHHHcCCch
Q 047930 315 AWSLFKKMAGDYIEGSEFKWVAREVAKECAGLP 347 (395)
Q Consensus 315 ~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~GlP 347 (395)
-.++|+.........++.. ...+++.|.|.-
T Consensus 627 R~~i~~~~~~~~~~~~~~~--l~~la~~t~g~s 657 (733)
T TIGR01243 627 RKEIFKIHTRSMPLAEDVD--LEELAEMTEGYT 657 (733)
T ss_pred HHHHHHHHhcCCCCCccCC--HHHHHHHcCCCC
Confidence 9999987764332222211 456777888764
No 155
>PRK07261 topology modulation protein; Provisional
Probab=97.62 E-value=0.00026 Score=59.66 Aligned_cols=34 Identities=29% Similarity=0.507 Sum_probs=25.1
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhccc-CCCCEEEE
Q 047930 177 MLGIYGMGGIGKTTLAKEVARKAENE-KLFDQVIF 210 (395)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~~~~-~~f~~~~w 210 (395)
.|.|+|++|+||||||+.+....... -+.|...|
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~ 36 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHF 36 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEe
Confidence 47899999999999999998764322 13455555
No 156
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.62 E-value=0.0013 Score=62.34 Aligned_cols=181 Identities=17% Similarity=0.154 Sum_probs=102.7
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCccccchhhhHHHHHHHHhcCC
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFADKLGLTLHEETESGRARSLCNRLKKEK 254 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 254 (395)
...+.|+|..|.|||-|++.+.+.......=..+++++ .+.....++..+.. ...+...+.. +
T Consensus 113 ~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~------se~f~~~~v~a~~~--------~~~~~Fk~~y-~-- 175 (408)
T COG0593 113 YNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLT------SEDFTNDFVKALRD--------NEMEKFKEKY-S-- 175 (408)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEecc------HHHHHHHHHHHHHh--------hhHHHHHHhh-c--
Confidence 56789999999999999999999876532222344442 34444555544432 1233444443 1
Q ss_pred eEEEEEeCCCCc---cccch-h---ccccCCCCCCcEEEEeecchhhh--------hhcCCCcceeecCCCChHHHHHHH
Q 047930 255 RILVILDNIWEN---LDFQA-V---GIPHGDGHKGSKVLLTARSLDVL--------SRKMDSQQNFSFDVLKEDEAWSLF 319 (395)
Q Consensus 255 r~LlVlDdv~~~---~~~~~-l---~~~l~~~~~gs~iivTtR~~~va--------~~~~~~~~~~~l~~L~~~e~~~lf 319 (395)
-=++++||++-. +.|+. + ...+.. .|-.||+|++...-. .......-++++.+++.+....++
T Consensus 176 ~dlllIDDiq~l~gk~~~qeefFh~FN~l~~--~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL 253 (408)
T COG0593 176 LDLLLIDDIQFLAGKERTQEEFFHTFNALLE--NGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAIL 253 (408)
T ss_pred cCeeeechHhHhcCChhHHHHHHHHHHHHHh--cCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHH
Confidence 238999999653 22322 2 233322 233799988642211 112344578999999999999999
Q ss_pred HHhhCCC--CCCCchHHHHHHHHHHcCCc----hHHHHHHHHHhh--C-C-CHHHHHHHHHHhcCCCC
Q 047930 320 KKMAGDY--IEGSEFKWVAREVAKECAGL----PVSIVTVARALR--N-K-RLFEWKDALEQLRRPSS 377 (395)
Q Consensus 320 ~~~~~~~--~~~~~~~~~~~~i~~~c~Gl----Plai~~i~~~l~--~-~-~~~~w~~~l~~l~~~~~ 377 (395)
.+.+... ..++ ++..-|++..... .-|+..+..+-. . . +...-..+++.+.....
T Consensus 254 ~kka~~~~~~i~~---ev~~~la~~~~~nvReLegaL~~l~~~a~~~~~~iTi~~v~e~L~~~~~~~~ 318 (408)
T COG0593 254 RKKAEDRGIEIPD---EVLEFLAKRLDRNVRELEGALNRLDAFALFTKRAITIDLVKEILKDLLRAGE 318 (408)
T ss_pred HHHHHhcCCCCCH---HHHHHHHHHhhccHHHHHHHHHHHHHHHHhcCccCcHHHHHHHHHHhhcccc
Confidence 9977422 2222 2344444444333 233333322221 2 2 67777777777655433
No 157
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.61 E-value=0.00067 Score=70.51 Aligned_cols=101 Identities=20% Similarity=0.283 Sum_probs=55.2
Q ss_pred hhchHHHHHHHHHHhc-------CC--CceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHH
Q 047930 156 FESRMSTLNDILDALK-------NP--DVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEF 226 (395)
Q Consensus 156 ~~gr~~~~~~l~~~l~-------~~--~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 226 (395)
++|.+..++.+...+. ++ ...++.++|+.|+|||+||+.++.... ...+.++.+...... .+
T Consensus 456 v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~-----~~~~~~d~se~~~~~----~~ 526 (731)
T TIGR02639 456 IFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALG-----VHLERFDMSEYMEKH----TV 526 (731)
T ss_pred eeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhc-----CCeEEEeCchhhhcc----cH
Confidence 4555666666665554 11 234688999999999999999998653 223445544322111 11
Q ss_pred HHHhCCCccccchhhhHHHHHHHHhcCCeEEEEEeCCCCc
Q 047930 227 ADKLGLTLHEETESGRARSLCNRLKKEKRILVILDNIWEN 266 (395)
Q Consensus 227 ~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~ 266 (395)
..-++.+.... ..+....+.+.+.....-+|+||+++..
T Consensus 527 ~~lig~~~gyv-g~~~~~~l~~~~~~~p~~VvllDEieka 565 (731)
T TIGR02639 527 SRLIGAPPGYV-GFEQGGLLTEAVRKHPHCVLLLDEIEKA 565 (731)
T ss_pred HHHhcCCCCCc-ccchhhHHHHHHHhCCCeEEEEechhhc
Confidence 11122221110 1112234455555444569999999754
No 158
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=97.61 E-value=0.00079 Score=62.96 Aligned_cols=140 Identities=19% Similarity=0.169 Sum_probs=81.5
Q ss_pred hchHHHHHHHHHHhc-CCCceE-EEEEecCCCcHHHHHHHHHHHhcccCC-------------------CCEEEEEEeCC
Q 047930 157 ESRMSTLNDILDALK-NPDVNM-LGIYGMGGIGKTTLAKEVARKAENEKL-------------------FDQVIFVEVSQ 215 (395)
Q Consensus 157 ~gr~~~~~~l~~~l~-~~~~~v-i~I~G~~GiGKTtLa~~v~~~~~~~~~-------------------f~~~~wv~~s~ 215 (395)
++-+.....+..+.. .++.+. +.++|+.|+||||+|..+.+....... ...+..++.+.
T Consensus 4 ~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~ 83 (325)
T COG0470 4 VPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSD 83 (325)
T ss_pred ccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecccc
Confidence 445556666777766 344444 899999999999999999987653221 12344444444
Q ss_pred cCC---HHHHHHHHHHHhCCCccccchhhhHHHHHHHHhcCCeEEEEEeCCCCcc--ccchhccccCCCCCCcEEEEeec
Q 047930 216 IQD---IRKIQGEFADKLGLTLHEETESGRARSLCNRLKKEKRILVILDNIWENL--DFQAVGIPHGDGHKGSKVLLTAR 290 (395)
Q Consensus 216 ~~~---~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iivTtR 290 (395)
... ..+..+++.+....... .++.-+++||+++... .-..+...+......+++|++|.
T Consensus 84 ~~~~~i~~~~vr~~~~~~~~~~~----------------~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~n 147 (325)
T COG0470 84 LRKIDIIVEQVRELAEFLSESPL----------------EGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILITN 147 (325)
T ss_pred cCCCcchHHHHHHHHHHhccCCC----------------CCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEcC
Confidence 333 23333344333322111 2567899999997653 23334444444455677777777
Q ss_pred c-hhhhhhcCCCcceeecCCCCh
Q 047930 291 S-LDVLSRKMDSQQNFSFDVLKE 312 (395)
Q Consensus 291 ~-~~va~~~~~~~~~~~l~~L~~ 312 (395)
. ..+.......+..+++.+.+.
T Consensus 148 ~~~~il~tI~SRc~~i~f~~~~~ 170 (325)
T COG0470 148 DPSKILPTIRSRCQRIRFKPPSR 170 (325)
T ss_pred ChhhccchhhhcceeeecCCchH
Confidence 4 334333445566788877443
No 159
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.60 E-value=0.00026 Score=70.29 Aligned_cols=75 Identities=20% Similarity=0.324 Sum_probs=56.4
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCccccchhhhHHHHHHHHhcC
Q 047930 174 DVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFADKLGLTLHEETESGRARSLCNRLKKE 253 (395)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 253 (395)
.-++..++|++|.||||||..++.... | .++-+++|...+...+-..|...+.....-. ...
T Consensus 325 ~kKilLL~GppGlGKTTLAHViAkqaG----Y-sVvEINASDeRt~~~v~~kI~~avq~~s~l~-------------ads 386 (877)
T KOG1969|consen 325 PKKILLLCGPPGLGKTTLAHVIAKQAG----Y-SVVEINASDERTAPMVKEKIENAVQNHSVLD-------------ADS 386 (877)
T ss_pred ccceEEeecCCCCChhHHHHHHHHhcC----c-eEEEecccccccHHHHHHHHHHHHhhccccc-------------cCC
Confidence 468999999999999999999998764 3 2678999998888887777766554321111 025
Q ss_pred CeEEEEEeCCCCc
Q 047930 254 KRILVILDNIWEN 266 (395)
Q Consensus 254 kr~LlVlDdv~~~ 266 (395)
++.-||+|+++..
T Consensus 387 rP~CLViDEIDGa 399 (877)
T KOG1969|consen 387 RPVCLVIDEIDGA 399 (877)
T ss_pred CcceEEEecccCC
Confidence 7888999999765
No 160
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=97.59 E-value=0.0008 Score=62.50 Aligned_cols=29 Identities=31% Similarity=0.331 Sum_probs=25.9
Q ss_pred CCceEEEEEecCCCcHHHHHHHHHHHhcc
Q 047930 173 PDVNMLGIYGMGGIGKTTLAKEVARKAEN 201 (395)
Q Consensus 173 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 201 (395)
..+..+.|+|++|+|||.+|+.+++....
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg~ 174 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMGI 174 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcCC
Confidence 45788999999999999999999998764
No 161
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.56 E-value=0.00034 Score=64.55 Aligned_cols=116 Identities=18% Similarity=0.216 Sum_probs=67.8
Q ss_pred chHHHHHHHHHHhcC----CCceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCC
Q 047930 158 SRMSTLNDILDALKN----PDVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFADKLGLT 233 (395)
Q Consensus 158 gr~~~~~~l~~~l~~----~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~ 233 (395)
++........+++.. +..+-+.++|..|+|||.||..+++....+ .+. +.|+++ .+++.++.......
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~-g~~-v~~~~~------~~l~~~lk~~~~~~ 206 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELAKK-GVS-STLLHF------PEFIRELKNSISDG 206 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHHHc-CCC-EEEEEH------HHHHHHHHHHHhcC
Confidence 344444444555441 234678899999999999999999987633 232 456654 35566665554311
Q ss_pred ccccchhhhHHHHHHHHhcCCeEEEEEeCCCCc--cccch--hcccc-CCC-CCCcEEEEeecc
Q 047930 234 LHEETESGRARSLCNRLKKEKRILVILDNIWEN--LDFQA--VGIPH-GDG-HKGSKVLLTARS 291 (395)
Q Consensus 234 ~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~--~~~~~--l~~~l-~~~-~~gs~iivTtR~ 291 (395)
......+.+. +-=||||||+... ..|.. +...+ ... .++..+|+||.-
T Consensus 207 --------~~~~~l~~l~--~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl 260 (306)
T PRK08939 207 --------SVKEKIDAVK--EAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNF 260 (306)
T ss_pred --------cHHHHHHHhc--CCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 1234444453 4679999999543 45643 33322 111 234457777763
No 162
>PRK12377 putative replication protein; Provisional
Probab=97.56 E-value=0.0003 Score=62.68 Aligned_cols=74 Identities=22% Similarity=0.238 Sum_probs=48.1
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCccccchhhhHHHHHHHHhcCC
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFADKLGLTLHEETESGRARSLCNRLKKEK 254 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 254 (395)
...+.++|..|+|||.||..+++....+ ...++++++ .+++..+....... .....+.+.+. +
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~--g~~v~~i~~------~~l~~~l~~~~~~~-------~~~~~~l~~l~--~ 163 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAK--GRSVIVVTV------PDVMSRLHESYDNG-------QSGEKFLQELC--K 163 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHc--CCCeEEEEH------HHHHHHHHHHHhcc-------chHHHHHHHhc--C
Confidence 4578899999999999999999987643 233566654 34555554443211 11224445553 4
Q ss_pred eEEEEEeCCCC
Q 047930 255 RILVILDNIWE 265 (395)
Q Consensus 255 r~LlVlDdv~~ 265 (395)
--||||||+..
T Consensus 164 ~dLLiIDDlg~ 174 (248)
T PRK12377 164 VDLLVLDEIGI 174 (248)
T ss_pred CCEEEEcCCCC
Confidence 67999999943
No 163
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.54 E-value=0.0029 Score=61.89 Aligned_cols=131 Identities=18% Similarity=0.282 Sum_probs=80.0
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCccccchhhhHHHHHHHHhcCC
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFADKLGLTLHEETESGRARSLCNRLKKEK 254 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 254 (395)
+.-|.+||++|+|||-||+.++|..... |+++-.+ +++...+ | .....+..+.++-+..-
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEag~N-------FisVKGP----ELlNkYV---G------ESErAVR~vFqRAR~sa 604 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEAGAN-------FISVKGP----ELLNKYV---G------ESERAVRQVFQRARASA 604 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhccCc-------eEeecCH----HHHHHHh---h------hHHHHHHHHHHHhhcCC
Confidence 5567899999999999999999998754 4555443 2222222 1 11224556666666678
Q ss_pred eEEEEEeCCCCcc-------cc------chhccccC--CCCCCcEEEEeecchhhh-hhcC---CCcceeecCCCChHHH
Q 047930 255 RILVILDNIWENL-------DF------QAVGIPHG--DGHKGSKVLLTARSLDVL-SRKM---DSQQNFSFDVLKEDEA 315 (395)
Q Consensus 255 r~LlVlDdv~~~~-------~~------~~l~~~l~--~~~~gs~iivTtR~~~va-~~~~---~~~~~~~l~~L~~~e~ 315 (395)
+|+|+||+++... .| ..+..-+- ....|.-||-.|...++. ...+ .-...+-+..-+.+|-
T Consensus 605 PCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR 684 (802)
T KOG0733|consen 605 PCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEER 684 (802)
T ss_pred CeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHH
Confidence 9999999997541 11 12221221 123455566655544432 1111 1234666777788999
Q ss_pred HHHHHHhhCC
Q 047930 316 WSLFKKMAGD 325 (395)
Q Consensus 316 ~~lf~~~~~~ 325 (395)
..+++....+
T Consensus 685 ~~ILK~~tkn 694 (802)
T KOG0733|consen 685 VAILKTITKN 694 (802)
T ss_pred HHHHHHHhcc
Confidence 9999988863
No 164
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.53 E-value=0.00036 Score=66.89 Aligned_cols=88 Identities=28% Similarity=0.353 Sum_probs=59.2
Q ss_pred hHHHHHHHHHHhcCCC---------ceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHHHH
Q 047930 159 RMSTLNDILDALKNPD---------VNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFADK 229 (395)
Q Consensus 159 r~~~~~~l~~~l~~~~---------~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 229 (395)
-.+|++++++.|.++. ++-|.++|++|+|||-||+.++-+..+. | |......|+ ++.--
T Consensus 312 AK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VP--F----F~~sGSEFd------Em~VG 379 (752)
T KOG0734|consen 312 AKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVP--F----FYASGSEFD------EMFVG 379 (752)
T ss_pred HHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCC--e----Eeccccchh------hhhhc
Confidence 4567899999998542 5668899999999999999999887764 2 222222222 11111
Q ss_pred hCCCccccchhhhHHHHHHHHhcCCeEEEEEeCCCCc
Q 047930 230 LGLTLHEETESGRARSLCNRLKKEKRILVILDNIWEN 266 (395)
Q Consensus 230 l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~ 266 (395)
. ...++..|...-+..-+|+|+||+++..
T Consensus 380 v--------GArRVRdLF~aAk~~APcIIFIDEiDav 408 (752)
T KOG0734|consen 380 V--------GARRVRDLFAAAKARAPCIIFIDEIDAV 408 (752)
T ss_pred c--------cHHHHHHHHHHHHhcCCeEEEEechhhh
Confidence 1 1234556666666677999999998754
No 165
>PRK08181 transposase; Validated
Probab=97.52 E-value=0.00022 Score=64.39 Aligned_cols=105 Identities=20% Similarity=0.119 Sum_probs=58.4
Q ss_pred HHhcCCCceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCccccchhhhHHHHH
Q 047930 168 DALKNPDVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFADKLGLTLHEETESGRARSLC 247 (395)
Q Consensus 168 ~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~ 247 (395)
+|+.. ...+.++|++|+|||.||..+.+....+ ...++|++ ..+++..+..... . .....+.
T Consensus 101 ~~~~~--~~nlll~Gp~GtGKTHLa~Aia~~a~~~--g~~v~f~~------~~~L~~~l~~a~~----~----~~~~~~l 162 (269)
T PRK08181 101 SWLAK--GANLLLFGPPGGGKSHLAAAIGLALIEN--GWRVLFTR------TTDLVQKLQVARR----E----LQLESAI 162 (269)
T ss_pred HHHhc--CceEEEEecCCCcHHHHHHHHHHHHHHc--CCceeeee------HHHHHHHHHHHHh----C----CcHHHHH
Confidence 45543 3458899999999999999999876433 22345554 3455555543321 0 1222344
Q ss_pred HHHhcCCeEEEEEeCCCCc--ccc-c-hhccccCCCCCCcEEEEeecch
Q 047930 248 NRLKKEKRILVILDNIWEN--LDF-Q-AVGIPHGDGHKGSKVLLTARSL 292 (395)
Q Consensus 248 ~~l~~~kr~LlVlDdv~~~--~~~-~-~l~~~l~~~~~gs~iivTtR~~ 292 (395)
+.+. +-=||||||+... ..+ . .+...+.....+..+||||...
T Consensus 163 ~~l~--~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 163 AKLD--KFDLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQP 209 (269)
T ss_pred HHHh--cCCEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 4443 3459999999543 222 1 1222221111123588888753
No 166
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.50 E-value=0.0032 Score=54.65 Aligned_cols=115 Identities=14% Similarity=0.238 Sum_probs=68.5
Q ss_pred cccchhchHHHHHHHHHH----hcCCCceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHH
Q 047930 152 DYEAFESRMSTLNDILDA----LKNPDVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFA 227 (395)
Q Consensus 152 ~~~~~~gr~~~~~~l~~~----l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 227 (395)
+...++|-+...+.|++. +.....-.+.+||..|+|||+|++.+.+....+ .-..+ .++..
T Consensus 58 ~L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~--glrLV--EV~k~----------- 122 (287)
T COG2607 58 DLADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADE--GLRLV--EVDKE----------- 122 (287)
T ss_pred CHHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhc--CCeEE--EEcHH-----------
Confidence 344566766666555543 334445668899999999999999999987643 22222 22211
Q ss_pred HHhCCCccccchhhhHHHHHHHHh-cCCeEEEEEeCCCC---ccccchhccccCC---CCCCcEEEEeecch
Q 047930 228 DKLGLTLHEETESGRARSLCNRLK-KEKRILVILDNIWE---NLDFQAVGIPHGD---GHKGSKVLLTARSL 292 (395)
Q Consensus 228 ~~l~~~~~~~~~~~~~~~l~~~l~-~~kr~LlVlDdv~~---~~~~~~l~~~l~~---~~~gs~iivTtR~~ 292 (395)
+...+..+.+.|+ ...||+|+.||+.- ...+..++..+-. ..+..-++..|.+.
T Consensus 123 -----------dl~~Lp~l~~~Lr~~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNR 183 (287)
T COG2607 123 -----------DLATLPDLVELLRARPEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSNR 183 (287)
T ss_pred -----------HHhhHHHHHHHHhcCCceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecCC
Confidence 1112334555554 36799999999942 3456666666532 22344455555554
No 167
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.49 E-value=0.00036 Score=70.96 Aligned_cols=161 Identities=14% Similarity=0.166 Sum_probs=96.4
Q ss_pred ccccchhchHHHHHHHHHHhcCCCceEEEEEecCCCcHHHHHHHHHHHhcccCCC----CEEEEEEeCCcCCHHHHHHHH
Q 047930 151 KDYEAFESRMSTLNDILDALKNPDVNMLGIYGMGGIGKTTLAKEVARKAENEKLF----DQVIFVEVSQIQDIRKIQGEF 226 (395)
Q Consensus 151 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f----~~~~wv~~s~~~~~~~~~~~i 226 (395)
....+.+||++|+..+++.|....-..-.++|.+|+|||+++.-++......+-. +..++. .++
T Consensus 167 gklDPvIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~s-----LD~------- 234 (786)
T COG0542 167 GKLDPVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYS-----LDL------- 234 (786)
T ss_pred CCCCCCcChHHHHHHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEE-----ecH-------
Confidence 3457789999999999999984332334578999999999999988875433211 111110 011
Q ss_pred HHHhCCCccccchhhhHHHHHHHHhcCCeEEEEEeCCCCcc--------ccc--hhccccCCCCCCcEEEEeecchhh--
Q 047930 227 ADKLGLTLHEETESGRARSLCNRLKKEKRILVILDNIWENL--------DFQ--AVGIPHGDGHKGSKVLLTARSLDV-- 294 (395)
Q Consensus 227 ~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~--------~~~--~l~~~l~~~~~gs~iivTtR~~~v-- 294 (395)
..-.....-...-.+.+..+.+.+.+.++.+|++|.+.... ..+ .+..|....+.--.|-.||-++.-
T Consensus 235 g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGeL~~IGATT~~EYRk~ 314 (786)
T COG0542 235 GSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGELRCIGATTLDEYRKY 314 (786)
T ss_pred HHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcCCeEEEEeccHHHHHHH
Confidence 11111111223344567777777776569999999986431 122 122222222223346667765432
Q ss_pred h---hhcCCCcceeecCCCChHHHHHHHHHhh
Q 047930 295 L---SRKMDSQQNFSFDVLKEDEAWSLFKKMA 323 (395)
Q Consensus 295 a---~~~~~~~~~~~l~~L~~~e~~~lf~~~~ 323 (395)
. .........+.+...+.+++..+++...
T Consensus 315 iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk 346 (786)
T COG0542 315 IEKDAALERRFQKVLVDEPSVEDTIAILRGLK 346 (786)
T ss_pred hhhchHHHhcCceeeCCCCCHHHHHHHHHHHH
Confidence 0 1123355688999999999999997654
No 168
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.49 E-value=0.00073 Score=58.95 Aligned_cols=86 Identities=16% Similarity=0.247 Sum_probs=53.2
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHHHHh-C---CC----cc--ccchhhhHH
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFADKL-G---LT----LH--EETESGRAR 244 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l-~---~~----~~--~~~~~~~~~ 244 (395)
-.++.|+|++|+|||+++.++....... -..++|++... ++...+.+ ++... . .. .. .......+.
T Consensus 12 g~i~~i~G~~GsGKT~l~~~~~~~~~~~--g~~v~yi~~e~-~~~~rl~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 87 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICMILAVNAARQ--GKKVVYIDTEG-LSPERFKQ-IAEDRPERALSNFIVFEVFDFDEQGVAIQ 87 (209)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEECCC-CCHHHHHH-HHHhChHHHhcCEEEEECCCHHHHHHHHH
Confidence 4789999999999999999988775432 45689999875 56555444 33321 0 00 00 001112244
Q ss_pred HHHHHHhcCCeEEEEEeCCC
Q 047930 245 SLCNRLKKEKRILVILDNIW 264 (395)
Q Consensus 245 ~l~~~l~~~kr~LlVlDdv~ 264 (395)
.+.+.+..++.-+||+|.+.
T Consensus 88 ~l~~~~~~~~~~lvVIDSis 107 (209)
T TIGR02237 88 KTSKFIDRDSASLVVVDSFT 107 (209)
T ss_pred HHHHHHhhcCccEEEEeCcH
Confidence 44444544456799999985
No 169
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=97.47 E-value=0.0021 Score=59.85 Aligned_cols=89 Identities=10% Similarity=0.044 Sum_probs=50.5
Q ss_pred CCeEEEEEeCCCCcc--ccchhccccCCCCCCcEEEEeecch-hhhhhcCCCcceeecCCCChHHHHHHHHHhhCCCCCC
Q 047930 253 EKRILVILDNIWENL--DFQAVGIPHGDGHKGSKVLLTARSL-DVLSRKMDSQQNFSFDVLKEDEAWSLFKKMAGDYIEG 329 (395)
Q Consensus 253 ~kr~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iivTtR~~-~va~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~ 329 (395)
+++-++|+|++...+ .-..+...+.....++.+|++|.+. .+..........+.+.+++.+++.+.+.... .+
T Consensus 112 ~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~~----~~ 187 (325)
T PRK08699 112 GGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRERG----VA 187 (325)
T ss_pred CCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhcC----CC
Confidence 344455668876543 2223332332222356577777764 4444444556789999999999988886541 11
Q ss_pred CchHHHHHHHHHHcCCchHHH
Q 047930 330 SEFKWVAREVAKECAGLPVSI 350 (395)
Q Consensus 330 ~~~~~~~~~i~~~c~GlPlai 350 (395)
.. . ..+..++|.|+..
T Consensus 188 ~~-~----~~l~~~~g~p~~~ 203 (325)
T PRK08699 188 EP-E----ERLAFHSGAPLFD 203 (325)
T ss_pred cH-H----HHHHHhCCChhhh
Confidence 11 1 1235688888643
No 170
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=0.0046 Score=59.54 Aligned_cols=161 Identities=17% Similarity=0.277 Sum_probs=90.3
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCccccchhhhHHHHHHHHhcC
Q 047930 174 DVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFADKLGLTLHEETESGRARSLCNRLKKE 253 (395)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 253 (395)
....+.+.|++|+|||+||..++.... |..+--++ ++++ ++. .+.....-+..+.+---+.
T Consensus 537 ~lvSvLl~Gp~~sGKTaLAA~iA~~S~----FPFvKiiS------pe~m-------iG~--sEsaKc~~i~k~F~DAYkS 597 (744)
T KOG0741|consen 537 PLVSVLLEGPPGSGKTALAAKIALSSD----FPFVKIIS------PEDM-------IGL--SESAKCAHIKKIFEDAYKS 597 (744)
T ss_pred cceEEEEecCCCCChHHHHHHHHhhcC----CCeEEEeC------hHHc-------cCc--cHHHHHHHHHHHHHHhhcC
Confidence 456778999999999999999998754 55433222 1110 000 0000001111222211124
Q ss_pred CeEEEEEeCCCCccccchhcccc---------------CCCCCCcEEEEeecchhhhhhcCC----CcceeecCCCCh-H
Q 047930 254 KRILVILDNIWENLDFQAVGIPH---------------GDGHKGSKVLLTARSLDVLSRKMD----SQQNFSFDVLKE-D 313 (395)
Q Consensus 254 kr~LlVlDdv~~~~~~~~l~~~l---------------~~~~~gs~iivTtR~~~va~~~~~----~~~~~~l~~L~~-~ 313 (395)
.--.||+||+....+|-.+...| |+.++.--|+-||....+.. .++ ....|+++.++. +
T Consensus 598 ~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~-~m~i~~~F~~~i~Vpnl~~~~ 676 (744)
T KOG0741|consen 598 PLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQ-EMGILDCFSSTIHVPNLTTGE 676 (744)
T ss_pred cceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHH-HcCHHHhhhheeecCccCchH
Confidence 55689999998777766554332 22233333444666565542 121 234789999988 7
Q ss_pred HHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHHHHHHHHHhh
Q 047930 314 EAWSLFKKMAGDYIEGSEFKWVAREVAKECAGLPVSIVTVARALR 358 (395)
Q Consensus 314 e~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~i~~~l~ 358 (395)
+..+.++..- ...+.+...++.+...+| .-.+|+.+-.++.
T Consensus 677 ~~~~vl~~~n--~fsd~~~~~~~~~~~~~~--~~vgIKklL~lie 717 (744)
T KOG0741|consen 677 QLLEVLEELN--IFSDDEVRAIAEQLLSKK--VNVGIKKLLMLIE 717 (744)
T ss_pred HHHHHHHHcc--CCCcchhHHHHHHHhccc--cchhHHHHHHHHH
Confidence 7788777653 122344455677777777 4455666666654
No 171
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.45 E-value=0.0017 Score=64.43 Aligned_cols=151 Identities=16% Similarity=0.094 Sum_probs=84.7
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCc--CCHHHHHHHHHHHhCCCccccchhhhHHHHHHHHhc
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQI--QDIRKIQGEFADKLGLTLHEETESGRARSLCNRLKK 252 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~--~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 252 (395)
.+.|.|.|+.|+|||+||+.+++... +.+.-++.+++++.- ...+.+++.+-.. ..+.+.
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~v----------------fse~~~- 492 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGSSLEKIQKFLNNV----------------FSEALW- 492 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccchhHHHHHHHHHHH----------------HHHHHh-
Confidence 45688999999999999999999877 344555667776542 1233333222211 222333
Q ss_pred CCeEEEEEeCCCCc--------cccch-----------hccccCCCCCCc--EEEEeecchhhh-hh---cCCCcceeec
Q 047930 253 EKRILVILDNIWEN--------LDFQA-----------VGIPHGDGHKGS--KVLLTARSLDVL-SR---KMDSQQNFSF 307 (395)
Q Consensus 253 ~kr~LlVlDdv~~~--------~~~~~-----------l~~~l~~~~~gs--~iivTtR~~~va-~~---~~~~~~~~~l 307 (395)
..+-++||||++.. .+|.. +...+ ...+. .+|.|.....-. .. ..-...++.|
T Consensus 493 ~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y--~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L 570 (952)
T KOG0735|consen 493 YAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIY--LKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIAL 570 (952)
T ss_pred hCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHH--HccCcEEEEEEechhhhhcChhhcCccceEEEEec
Confidence 56899999999643 12211 11111 22233 344454432211 11 1122347889
Q ss_pred CCCChHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCc
Q 047930 308 DVLKEDEAWSLFKKMAGDYIEGSEFKWVAREVAKECAGL 346 (395)
Q Consensus 308 ~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~Gl 346 (395)
.++...+--++++........ ....+...-+..+|+|.
T Consensus 571 ~ap~~~~R~~IL~~~~s~~~~-~~~~~dLd~ls~~TEGy 608 (952)
T KOG0735|consen 571 PAPAVTRRKEILTTIFSKNLS-DITMDDLDFLSVKTEGY 608 (952)
T ss_pred CCcchhHHHHHHHHHHHhhhh-hhhhHHHHHHHHhcCCc
Confidence 999988888888777643221 11122334477788886
No 172
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.42 E-value=0.00085 Score=59.68 Aligned_cols=90 Identities=20% Similarity=0.279 Sum_probs=56.2
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhcccCC----CCEEEEEEeCCcCCHHHHHHHHHHHhCCCccc-------------c
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARKAENEKL----FDQVIFVEVSQIQDIRKIQGEFADKLGLTLHE-------------E 237 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~----f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-------------~ 237 (395)
-.++.|+|.+|+|||+|+.+++-....... ...++|++....++...+ .++++..+..... .
T Consensus 19 g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl-~~~~~~~~~~~~~~~~~i~~~~~~~~~ 97 (235)
T cd01123 19 GSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERL-VQIAERFGLDPEEVLDNIYVARAYNSD 97 (235)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHH-HHHHHHhccChHhHhcCEEEEecCCHH
Confidence 468899999999999999999755332221 256899998887765544 3344443321110 0
Q ss_pred chhhhHHHHHHHHhcC-CeEEEEEeCCCC
Q 047930 238 TESGRARSLCNRLKKE-KRILVILDNIWE 265 (395)
Q Consensus 238 ~~~~~~~~l~~~l~~~-kr~LlVlDdv~~ 265 (395)
.....+..+.+.+.+. +.-|||+|.+..
T Consensus 98 ~l~~~l~~l~~~l~~~~~~~liVIDSis~ 126 (235)
T cd01123 98 HQLQLLEELEAILIESSRIKLVIVDSVTA 126 (235)
T ss_pred HHHHHHHHHHHHHhhcCCeeEEEEeCcHH
Confidence 1112334455555555 778999999853
No 173
>PRK06526 transposase; Provisional
Probab=97.42 E-value=0.00023 Score=63.90 Aligned_cols=74 Identities=23% Similarity=0.240 Sum_probs=43.8
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCccccchhhhHHHHHHHHhcCC
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFADKLGLTLHEETESGRARSLCNRLKKEK 254 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 254 (395)
...+.++|++|+|||+||..+......++ +. +.|+ +..+++..+...... .........+. +
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g-~~-v~f~------t~~~l~~~l~~~~~~--------~~~~~~l~~l~--~ 159 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAG-HR-VLFA------TAAQWVARLAAAHHA--------GRLQAELVKLG--R 159 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCC-Cc-hhhh------hHHHHHHHHHHHHhc--------CcHHHHHHHhc--c
Confidence 34688999999999999999988754332 22 3332 344555555433210 11122233332 3
Q ss_pred eEEEEEeCCCCc
Q 047930 255 RILVILDNIWEN 266 (395)
Q Consensus 255 r~LlVlDdv~~~ 266 (395)
.-||||||+...
T Consensus 160 ~dlLIIDD~g~~ 171 (254)
T PRK06526 160 YPLLIVDEVGYI 171 (254)
T ss_pred CCEEEEcccccC
Confidence 468999999643
No 174
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.42 E-value=0.00026 Score=59.99 Aligned_cols=74 Identities=31% Similarity=0.457 Sum_probs=45.1
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCccccchhhhHHHHHHHHhcCC
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFADKLGLTLHEETESGRARSLCNRLKKEK 254 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 254 (395)
...+.++|..|+|||.||..+.+....+. + .+.|++ ..+++..+-.. ... .....+.+.+. +
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g-~-~v~f~~------~~~L~~~l~~~----~~~----~~~~~~~~~l~--~ 108 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKG-Y-SVLFIT------ASDLLDELKQS----RSD----GSYEELLKRLK--R 108 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT----EEEEE------HHHHHHHHHCC----HCC----TTHCHHHHHHH--T
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCC-c-ceeEee------cCceecccccc----ccc----cchhhhcCccc--c
Confidence 35689999999999999999998765432 2 355664 34455554322 111 11234455555 3
Q ss_pred eEEEEEeCCCCc
Q 047930 255 RILVILDNIWEN 266 (395)
Q Consensus 255 r~LlVlDdv~~~ 266 (395)
-=||||||+-..
T Consensus 109 ~dlLilDDlG~~ 120 (178)
T PF01695_consen 109 VDLLILDDLGYE 120 (178)
T ss_dssp SSCEEEETCTSS
T ss_pred ccEeccccccee
Confidence 468889999543
No 175
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=97.40 E-value=0.0022 Score=65.63 Aligned_cols=149 Identities=19% Similarity=0.253 Sum_probs=79.5
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCccccchhhhHHHHHHHHhcCCe
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFADKLGLTLHEETESGRARSLCNRLKKEKR 255 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr 255 (395)
+-+.++|++|+|||++++.+....... | +.++.+. +.. +. .+. .......+.+......+
T Consensus 186 ~gill~G~~G~GKt~~~~~~a~~~~~~--f---~~is~~~------~~~-~~--~g~------~~~~~~~~f~~a~~~~P 245 (644)
T PRK10733 186 KGVLMVGPPGTGKTLLAKAIAGEAKVP--F---FTISGSD------FVE-MF--VGV------GASRVRDMFEQAKKAAP 245 (644)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHcCCC--E---EEEehHH------hHH-hh--hcc------cHHHHHHHHHHHHhcCC
Confidence 458899999999999999998876532 2 2222221 111 00 000 11122333333344568
Q ss_pred EEEEEeCCCCcc------------cc----chhccccC--CCCCCcEEEEeecchhhhh-hcC---CCcceeecCCCChH
Q 047930 256 ILVILDNIWENL------------DF----QAVGIPHG--DGHKGSKVLLTARSLDVLS-RKM---DSQQNFSFDVLKED 313 (395)
Q Consensus 256 ~LlVlDdv~~~~------------~~----~~l~~~l~--~~~~gs~iivTtR~~~va~-~~~---~~~~~~~l~~L~~~ 313 (395)
++|+||+++... .. ..+...+. ....+.-+|.||...+... ... .....+.+...+.+
T Consensus 246 ~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~ 325 (644)
T PRK10733 246 CIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVR 325 (644)
T ss_pred cEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHH
Confidence 999999986531 01 11111111 1223445555776544321 111 23467888888888
Q ss_pred HHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCc
Q 047930 314 EAWSLFKKMAGDYIEGSEFKWVAREVAKECAGL 346 (395)
Q Consensus 314 e~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~Gl 346 (395)
+-.++++.........++.. ...+++.+.|.
T Consensus 326 ~R~~Il~~~~~~~~l~~~~d--~~~la~~t~G~ 356 (644)
T PRK10733 326 GREQILKVHMRRVPLAPDID--AAIIARGTPGF 356 (644)
T ss_pred HHHHHHHHHhhcCCCCCcCC--HHHHHhhCCCC
Confidence 88888888775432222211 33566777663
No 176
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.37 E-value=0.0016 Score=67.22 Aligned_cols=101 Identities=15% Similarity=0.208 Sum_probs=55.0
Q ss_pred hhchHHHHHHHHHHhc-------C--CCceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHH
Q 047930 156 FESRMSTLNDILDALK-------N--PDVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEF 226 (395)
Q Consensus 156 ~~gr~~~~~~l~~~l~-------~--~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 226 (395)
++|.++.++.+...+. + .....+.++|+.|+|||++|+.+...... . .+.++.+...... .+
T Consensus 460 ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~--~---~i~id~se~~~~~----~~ 530 (758)
T PRK11034 460 VFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGI--E---LLRFDMSEYMERH----TV 530 (758)
T ss_pred EeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhCC--C---cEEeechhhcccc----cH
Confidence 4566666666666654 1 12357889999999999999999887631 1 2334443321111 11
Q ss_pred HHHhCCCccccchhhhHHHHHHHHhcCCeEEEEEeCCCCc
Q 047930 227 ADKLGLTLHEETESGRARSLCNRLKKEKRILVILDNIWEN 266 (395)
Q Consensus 227 ~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~ 266 (395)
..-++.+..... ......+.+.+......+|+||++...
T Consensus 531 ~~LiG~~~gyvg-~~~~g~L~~~v~~~p~sVlllDEieka 569 (758)
T PRK11034 531 SRLIGAPPGYVG-FDQGGLLTDAVIKHPHAVLLLDEIEKA 569 (758)
T ss_pred HHHcCCCCCccc-ccccchHHHHHHhCCCcEEEeccHhhh
Confidence 112232211110 111123344444344579999999754
No 177
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.36 E-value=0.004 Score=55.67 Aligned_cols=151 Identities=23% Similarity=0.258 Sum_probs=79.8
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCccccchhhhHHHHHHHHhcCC
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFADKLGLTLHEETESGRARSLCNRLKKEK 254 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 254 (395)
-+-|.++|++|+||+.||+.|+..... .|.++|.+.-+. +.++. ...++..|.+-.++++
T Consensus 166 wrgiLLyGPPGTGKSYLAKAVATEAnS-------TFFSvSSSDLvS-------KWmGE------SEkLVknLFemARe~k 225 (439)
T KOG0739|consen 166 WRGILLYGPPGTGKSYLAKAVATEANS-------TFFSVSSSDLVS-------KWMGE------SEKLVKNLFEMARENK 225 (439)
T ss_pred ceeEEEeCCCCCcHHHHHHHHHhhcCC-------ceEEeehHHHHH-------HHhcc------HHHHHHHHHHHHHhcC
Confidence 467899999999999999999987652 244555431111 11221 1234556666666789
Q ss_pred eEEEEEeCCCCc---------cccchhc----c---ccCCCCCCcEEEEeecchhhhhhc--CCCcceeecCCCChHHHH
Q 047930 255 RILVILDNIWEN---------LDFQAVG----I---PHGDGHKGSKVLLTARSLDVLSRK--MDSQQNFSFDVLKEDEAW 316 (395)
Q Consensus 255 r~LlVlDdv~~~---------~~~~~l~----~---~l~~~~~gs~iivTtR~~~va~~~--~~~~~~~~l~~L~~~e~~ 316 (395)
+-+|++|+++.. +.-..+. . ....+..|.-|+-.|...-+.... ......|-+ ||++..|.
T Consensus 226 PSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVLgATNiPw~LDsAIRRRFekRIYI-PLPe~~AR 304 (439)
T KOG0739|consen 226 PSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVLGATNIPWVLDSAIRRRFEKRIYI-PLPEAHAR 304 (439)
T ss_pred CcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEEecCCCchhHHHHHHHHhhcceec-cCCcHHHh
Confidence 999999999753 1111111 1 122333455555555543332100 011112222 56666664
Q ss_pred -HHHHHhhCCCCCCCchHHHHHHHHHHcCCch
Q 047930 317 -SLFKKMAGDYIEGSEFKWVAREVAKECAGLP 347 (395)
Q Consensus 317 -~lf~~~~~~~~~~~~~~~~~~~i~~~c~GlP 347 (395)
.+|+-+++.-.. .-.+.-.+++.++..|..
T Consensus 305 ~~MF~lhlG~tp~-~LT~~d~~eL~~kTeGyS 335 (439)
T KOG0739|consen 305 ARMFKLHLGDTPH-VLTEQDFKELARKTEGYS 335 (439)
T ss_pred hhhheeccCCCcc-ccchhhHHHHHhhcCCCC
Confidence 556666654222 112223456677776653
No 178
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.36 E-value=0.0056 Score=62.51 Aligned_cols=101 Identities=20% Similarity=0.320 Sum_probs=59.0
Q ss_pred hhchHHHHHHHHHHhc-------CC--CceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHH
Q 047930 156 FESRMSTLNDILDALK-------NP--DVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEF 226 (395)
Q Consensus 156 ~~gr~~~~~~l~~~l~-------~~--~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 226 (395)
++|.+..+..+.+.+. ++ ...+....|+.|+|||-||+.++......+ +..+-+ ++.+...+-
T Consensus 493 ViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e--~aliR~------DMSEy~EkH 564 (786)
T COG0542 493 VIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDE--QALIRI------DMSEYMEKH 564 (786)
T ss_pred eeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCC--ccceee------chHHHHHHH
Confidence 5677777777777664 22 346788899999999999999998763211 223333 333333222
Q ss_pred --HHHhCCCccccchhhhHHHHHHHHhcCCeE-EEEEeCCCCc
Q 047930 227 --ADKLGLTLHEETESGRARSLCNRLKKEKRI-LVILDNIWEN 266 (395)
Q Consensus 227 --~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~-LlVlDdv~~~ 266 (395)
.+-+|.++.-... +....|-+.+. .++| +|.||++...
T Consensus 565 sVSrLIGaPPGYVGy-eeGG~LTEaVR-r~PySViLlDEIEKA 605 (786)
T COG0542 565 SVSRLIGAPPGYVGY-EEGGQLTEAVR-RKPYSVILLDEIEKA 605 (786)
T ss_pred HHHHHhCCCCCCcee-ccccchhHhhh-cCCCeEEEechhhhc
Confidence 2223433322111 11335556665 4666 8889999643
No 179
>PRK06921 hypothetical protein; Provisional
Probab=97.36 E-value=0.00068 Score=61.36 Aligned_cols=71 Identities=24% Similarity=0.346 Sum_probs=44.4
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCccccchhhhHHHHHHHHhcC
Q 047930 174 DVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFADKLGLTLHEETESGRARSLCNRLKKE 253 (395)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 253 (395)
....+.++|..|+|||.|+..+++....+. -..++|++. .+++..+...+ .......+.+.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~-g~~v~y~~~------~~l~~~l~~~~----------~~~~~~~~~~~-- 176 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKK-GVPVLYFPF------VEGFGDLKDDF----------DLLEAKLNRMK-- 176 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhc-CceEEEEEH------HHHHHHHHHHH----------HHHHHHHHHhc--
Confidence 356789999999999999999999865331 234566654 23334433222 01122333443
Q ss_pred CeEEEEEeCC
Q 047930 254 KRILVILDNI 263 (395)
Q Consensus 254 kr~LlVlDdv 263 (395)
+-=||||||+
T Consensus 177 ~~dlLiIDDl 186 (266)
T PRK06921 177 KVEVLFIDDL 186 (266)
T ss_pred CCCEEEEecc
Confidence 3569999999
No 180
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.35 E-value=0.0014 Score=64.68 Aligned_cols=60 Identities=20% Similarity=0.318 Sum_probs=43.2
Q ss_pred cccccchhchHHHHHHHHHHhcC-----CCceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEe
Q 047930 150 NKDYEAFESRMSTLNDILDALKN-----PDVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEV 213 (395)
Q Consensus 150 ~~~~~~~~gr~~~~~~l~~~l~~-----~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~ 213 (395)
|....++.-....++++..||.. ...+++.+.|++|+||||.++.++++.. |+.+=|.+-
T Consensus 15 P~~~~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg----~~v~Ew~np 79 (519)
T PF03215_consen 15 PKTLDELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELG----FEVQEWINP 79 (519)
T ss_pred CCCHHHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhC----CeeEEecCC
Confidence 33444444455667788888762 3357899999999999999999998864 566667643
No 181
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.35 E-value=0.0012 Score=56.79 Aligned_cols=87 Identities=20% Similarity=0.295 Sum_probs=52.2
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCc-CCHHHHHHHHHHHhCCCccccc----hhhhHHHHHHH
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQI-QDIRKIQGEFADKLGLTLHEET----ESGRARSLCNR 249 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~~~----~~~~~~~l~~~ 249 (395)
+++|.++|+.|+||||.+.+++.....+ -..+..++.... ....+-++..++.++.+..... ....+....+.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~ 78 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLK--GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEK 78 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhc--cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHH
Confidence 4689999999999999998888776654 344677776432 3456677788888876533211 12223233333
Q ss_pred HhcCCeEEEEEeCC
Q 047930 250 LKKEKRILVILDNI 263 (395)
Q Consensus 250 l~~~kr~LlVlDdv 263 (395)
...++.=++++|=.
T Consensus 79 ~~~~~~D~vlIDT~ 92 (196)
T PF00448_consen 79 FRKKGYDLVLIDTA 92 (196)
T ss_dssp HHHTTSSEEEEEE-
T ss_pred HhhcCCCEEEEecC
Confidence 33222336677755
No 182
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.35 E-value=0.0073 Score=57.26 Aligned_cols=153 Identities=15% Similarity=0.171 Sum_probs=83.0
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCccccchhhhHHHHHHHHhcCCe
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFADKLGLTLHEETESGRARSLCNRLKKEKR 255 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr 255 (395)
+-=.++||+|+||||++.++++... |+.+ =+..+...+-.+ +..|... ...+
T Consensus 236 RGYLLYGPPGTGKSS~IaAmAn~L~----ydIy-dLeLt~v~~n~d---------------------Lr~LL~~--t~~k 287 (457)
T KOG0743|consen 236 RGYLLYGPPGTGKSSFIAAMANYLN----YDIY-DLELTEVKLDSD---------------------LRHLLLA--TPNK 287 (457)
T ss_pred ccceeeCCCCCCHHHHHHHHHhhcC----CceE-EeeeccccCcHH---------------------HHHHHHh--CCCC
Confidence 3345899999999999999998765 5432 122222111111 2222222 1346
Q ss_pred EEEEEeCCCCccc-----------cc---------hhcccc--CCCCC-CcEEE-Eeecchhhh-hhcC---CCcceeec
Q 047930 256 ILVILDNIWENLD-----------FQ---------AVGIPH--GDGHK-GSKVL-LTARSLDVL-SRKM---DSQQNFSF 307 (395)
Q Consensus 256 ~LlVlDdv~~~~~-----------~~---------~l~~~l--~~~~~-gs~ii-vTtR~~~va-~~~~---~~~~~~~l 307 (395)
-+|||.|++...+ .. .|...+ .+.++ +-||| .||...+-. +..+ .....+.|
T Consensus 288 SIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~m 367 (457)
T KOG0743|consen 288 SILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIYM 367 (457)
T ss_pred cEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEEEc
Confidence 7788888764311 11 011111 12223 23554 466553321 1111 23457889
Q ss_pred CCCChHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHHHHHHHHH-hhCC
Q 047930 308 DVLKEDEAWSLFKKMAGDYIEGSEFKWVAREVAKECAGLPVSIVTVARA-LRNK 360 (395)
Q Consensus 308 ~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~i~~~-l~~~ 360 (395)
.-=+.+....||.+.++...+++ +..+|.+.-.|.-+.=..++.. |.++
T Consensus 368 gyCtf~~fK~La~nYL~~~~~h~----L~~eie~l~~~~~~tPA~V~e~lm~~~ 417 (457)
T KOG0743|consen 368 GYCTFEAFKTLASNYLGIEEDHR----LFDEIERLIEETEVTPAQVAEELMKNK 417 (457)
T ss_pred CCCCHHHHHHHHHHhcCCCCCcc----hhHHHHHHhhcCccCHHHHHHHHhhcc
Confidence 99999999999999997544333 4455555555554444455444 4555
No 183
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.34 E-value=0.00021 Score=56.39 Aligned_cols=23 Identities=48% Similarity=0.616 Sum_probs=21.4
Q ss_pred EEEEEecCCCcHHHHHHHHHHHh
Q 047930 177 MLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
+|.|.|++|+||||+|+.+.+..
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999875
No 184
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.33 E-value=0.0016 Score=58.51 Aligned_cols=81 Identities=22% Similarity=0.308 Sum_probs=52.8
Q ss_pred HHHHhcCCCceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCccccchhhhHHH
Q 047930 166 ILDALKNPDVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFADKLGLTLHEETESGRARS 245 (395)
Q Consensus 166 l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~ 245 (395)
+.+++. +..-+.++|.+|+|||.||..+.++.. +..+ .+.+++ ..+++.++...... ......
T Consensus 98 ~~~~~~--~~~nl~l~G~~G~GKThLa~Ai~~~l~-~~g~-sv~f~~------~~el~~~Lk~~~~~-------~~~~~~ 160 (254)
T COG1484 98 LVEFFE--RGENLVLLGPPGVGKTHLAIAIGNELL-KAGI-SVLFIT------APDLLSKLKAAFDE-------GRLEEK 160 (254)
T ss_pred HHHHhc--cCCcEEEECCCCCcHHHHHHHHHHHHH-HcCC-eEEEEE------HHHHHHHHHHHHhc-------CchHHH
Confidence 344444 556789999999999999999999977 3223 355554 45666666665543 112233
Q ss_pred HHHHHhcCCeEEEEEeCCCC
Q 047930 246 LCNRLKKEKRILVILDNIWE 265 (395)
Q Consensus 246 l~~~l~~~kr~LlVlDdv~~ 265 (395)
+.+.+. +-=||||||+-.
T Consensus 161 l~~~l~--~~dlLIiDDlG~ 178 (254)
T COG1484 161 LLRELK--KVDLLIIDDIGY 178 (254)
T ss_pred HHHHhh--cCCEEEEecccC
Confidence 444343 345999999954
No 185
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.32 E-value=0.00095 Score=70.35 Aligned_cols=105 Identities=15% Similarity=0.290 Sum_probs=56.1
Q ss_pred chhchHHHHHHHHHHhc-------CCC--ceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHH
Q 047930 155 AFESRMSTLNDILDALK-------NPD--VNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGE 225 (395)
Q Consensus 155 ~~~gr~~~~~~l~~~l~-------~~~--~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 225 (395)
.++|.+..++.+...+. +++ ..++.++|+.|+|||+||+.+++..... -...+.+.++.... .. .
T Consensus 569 ~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~--~~~~i~id~se~~~-~~---~ 642 (857)
T PRK10865 569 RVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDS--DDAMVRIDMSEFME-KH---S 642 (857)
T ss_pred eEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcC--CCcEEEEEhHHhhh-hh---h
Confidence 35677777777666654 122 2478899999999999999999765322 12234444433211 11 1
Q ss_pred HHHHhCCCccccchhhhHHHHHHHHhcCCeEEEEEeCCCCc
Q 047930 226 FADKLGLTLHEETESGRARSLCNRLKKEKRILVILDNIWEN 266 (395)
Q Consensus 226 i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~ 266 (395)
...-++.+.... .......+.+.+.....-+|+|||+...
T Consensus 643 ~~~LiG~~pgy~-g~~~~g~l~~~v~~~p~~vLllDEieka 682 (857)
T PRK10865 643 VSRLVGAPPGYV-GYEEGGYLTEAVRRRPYSVILLDEVEKA 682 (857)
T ss_pred HHHHhCCCCccc-ccchhHHHHHHHHhCCCCeEEEeehhhC
Confidence 111123221111 1111123444444333469999999743
No 186
>PRK09183 transposase/IS protein; Provisional
Probab=97.31 E-value=0.00077 Score=60.82 Aligned_cols=25 Identities=32% Similarity=0.452 Sum_probs=21.6
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhc
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARKAE 200 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (395)
..+.|+|++|+|||+||..+.....
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~ 127 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAV 127 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHH
Confidence 4677999999999999999987654
No 187
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.30 E-value=0.0026 Score=57.55 Aligned_cols=28 Identities=32% Similarity=0.424 Sum_probs=24.9
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhccc
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARKAENE 202 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 202 (395)
-++|.++|++|+|||+|.+.+++...++
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR 204 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIR 204 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheee
Confidence 4789999999999999999999986553
No 188
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.29 E-value=0.001 Score=70.30 Aligned_cols=105 Identities=18% Similarity=0.287 Sum_probs=58.0
Q ss_pred chhchHHHHHHHHHHhcC-------C--CceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHH
Q 047930 155 AFESRMSTLNDILDALKN-------P--DVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGE 225 (395)
Q Consensus 155 ~~~gr~~~~~~l~~~l~~-------~--~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 225 (395)
.++|.+..++.+...+.. + ...++.++|+.|+|||++|+.+....... -...+.++.+.......
T Consensus 566 ~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~--~~~~i~~d~s~~~~~~~---- 639 (852)
T TIGR03346 566 RVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDD--EDAMVRIDMSEYMEKHS---- 639 (852)
T ss_pred ccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCC--CCcEEEEechhhcccch----
Confidence 367777777777776642 1 13568899999999999999999875422 12334444443222111
Q ss_pred HHHHhCCCccccchhhhHHHHHHHHhcCCeEEEEEeCCCCc
Q 047930 226 FADKLGLTLHEETESGRARSLCNRLKKEKRILVILDNIWEN 266 (395)
Q Consensus 226 i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~ 266 (395)
...-++.+.... .......+.+.+......+|+||++...
T Consensus 640 ~~~l~g~~~g~~-g~~~~g~l~~~v~~~p~~vlllDeieka 679 (852)
T TIGR03346 640 VARLIGAPPGYV-GYEEGGQLTEAVRRKPYSVVLFDEVEKA 679 (852)
T ss_pred HHHhcCCCCCcc-CcccccHHHHHHHcCCCcEEEEeccccC
Confidence 111122221110 1111123444444334459999999754
No 189
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.29 E-value=0.00023 Score=61.23 Aligned_cols=48 Identities=31% Similarity=0.381 Sum_probs=32.7
Q ss_pred HHHHHHHhcCCCceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEE
Q 047930 163 LNDILDALKNPDVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVE 212 (395)
Q Consensus 163 ~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~ 212 (395)
-...++.|. ...++.+.|++|+|||.||....-+.-....|+.++++.
T Consensus 9 Q~~~~~al~--~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~R 56 (205)
T PF02562_consen 9 QKFALDALL--NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITR 56 (205)
T ss_dssp HHHHHHHHH--H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE
T ss_pred HHHHHHHHH--hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 344455554 445889999999999999999887765557788877764
No 190
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.26 E-value=0.034 Score=51.99 Aligned_cols=40 Identities=23% Similarity=0.482 Sum_probs=31.4
Q ss_pred HHHHHHHhcC---CCceEEEEEecCCCcHHHHHHHHHHHhccc
Q 047930 163 LNDILDALKN---PDVNMLGIYGMGGIGKTTLAKEVARKAENE 202 (395)
Q Consensus 163 ~~~l~~~l~~---~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 202 (395)
.+.|.+.+.+ ....+|+|.|.=|+||||+.+.+.+.....
T Consensus 5 a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~ 47 (325)
T PF07693_consen 5 AKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEELKED 47 (325)
T ss_pred HHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 3445555543 567899999999999999999999887654
No 191
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.25 E-value=0.02 Score=57.78 Aligned_cols=94 Identities=21% Similarity=0.337 Sum_probs=62.8
Q ss_pred ccchhchHHHHHHHHHHhcC---------C---CceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHH
Q 047930 153 YEAFESRMSTLNDILDALKN---------P---DVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIR 220 (395)
Q Consensus 153 ~~~~~gr~~~~~~l~~~l~~---------~---~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~ 220 (395)
-.++-|-++.+.+|.+.+.- . .+.-|.++|++|+|||-||+.|+.+..- -|++|-.+
T Consensus 671 WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL-------~FlSVKGP---- 739 (953)
T KOG0736|consen 671 WDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSL-------NFLSVKGP---- 739 (953)
T ss_pred hhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhcee-------eEEeecCH----
Confidence 34455667777777776541 1 2456789999999999999999987653 46666554
Q ss_pred HHHHHHHHHhCCCccccchhhhHHHHHHHHhcCCeEEEEEeCCCCc
Q 047930 221 KIQGEFADKLGLTLHEETESGRARSLCNRLKKEKRILVILDNIWEN 266 (395)
Q Consensus 221 ~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~ 266 (395)
+++...+ | .....+.++.++-++.++|+|+||++++.
T Consensus 740 ELLNMYV---G------qSE~NVR~VFerAR~A~PCVIFFDELDSl 776 (953)
T KOG0736|consen 740 ELLNMYV---G------QSEENVREVFERARSAAPCVIFFDELDSL 776 (953)
T ss_pred HHHHHHh---c------chHHHHHHHHHHhhccCCeEEEecccccc
Confidence 2222211 1 11234567777777789999999999875
No 192
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.22 E-value=0.0074 Score=55.02 Aligned_cols=168 Identities=17% Similarity=0.162 Sum_probs=95.6
Q ss_pred cchhchHHHHHHHHHHhc----CCCceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCH-HHHHHHHHH
Q 047930 154 EAFESRMSTLNDILDALK----NPDVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDI-RKIQGEFAD 228 (395)
Q Consensus 154 ~~~~gr~~~~~~l~~~l~----~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~-~~~~~~i~~ 228 (395)
.+++|-.++-.++-.++. .+....+.|+|+.|.|||+|......+. +..-...+-|...+..-. .-.++.|..
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~--q~~~E~~l~v~Lng~~~~dk~al~~I~r 101 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDI--QENGENFLLVRLNGELQTDKIALKGITR 101 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhH--HhcCCeEEEEEECccchhhHHHHHHHHH
Confidence 346677666666666654 3444567799999999999999888872 121233444555443322 224455555
Q ss_pred HhCCCcc-----ccchhhhHHHHHHHHhc-----CCeEEEEEeCCCCccc-------cchhccccCCCCCCcEEEEeecc
Q 047930 229 KLGLTLH-----EETESGRARSLCNRLKK-----EKRILVILDNIWENLD-------FQAVGIPHGDGHKGSKVLLTARS 291 (395)
Q Consensus 229 ~l~~~~~-----~~~~~~~~~~l~~~l~~-----~kr~LlVlDdv~~~~~-------~~~l~~~l~~~~~gs~iivTtR~ 291 (395)
++..... ..+-.+.+..+.+.|+. +.++++|+|+++--.. +.-+...-....|-|-|-+|||-
T Consensus 102 ql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrl 181 (408)
T KOG2228|consen 102 QLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRL 181 (408)
T ss_pred HHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeeccc
Confidence 4432211 12334456677777763 3468888888753311 11111111123455667889985
Q ss_pred hhhh------hhcCCCcceeecCCCChHHHHHHHHHhh
Q 047930 292 LDVL------SRKMDSQQNFSFDVLKEDEAWSLFKKMA 323 (395)
Q Consensus 292 ~~va------~~~~~~~~~~~l~~L~~~e~~~lf~~~~ 323 (395)
...- ......-.++-+++++-++...++++.+
T Consensus 182 d~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 182 DILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred cHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 3221 1112222356667788899999999887
No 193
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.21 E-value=0.0025 Score=60.13 Aligned_cols=88 Identities=19% Similarity=0.282 Sum_probs=53.8
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCC-cCCHHHHHHHHHHHhCCCccccchhhhHHHHHHHHhcC
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQ-IQDIRKIQGEFADKLGLTLHEETESGRARSLCNRLKKE 253 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 253 (395)
..++.++|+.|+||||++..+......+.....+..++... .....+-++...+.++.+.........+......+. +
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~-~ 215 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELR-N 215 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhc-C
Confidence 46899999999999999999988754221123455665432 224556666667777765443333223334444443 3
Q ss_pred CeEEEEEeCCC
Q 047930 254 KRILVILDNIW 264 (395)
Q Consensus 254 kr~LlVlDdv~ 264 (395)
+-++++|..-
T Consensus 216 -~DlVLIDTaG 225 (374)
T PRK14722 216 -KHMVLIDTIG 225 (374)
T ss_pred -CCEEEEcCCC
Confidence 4566699884
No 194
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=97.21 E-value=0.0058 Score=49.68 Aligned_cols=110 Identities=12% Similarity=0.153 Sum_probs=76.7
Q ss_pred hhhH-HHHHHHHHHhhhHHHhhhhcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHH
Q 047930 2 ADII-LSVIVEAAKCLAPPIYRQMSYLRKSKYTSNLQNLKTEVGNLEAERVSKQREVDEAKRRGEEIEKYVEKWLASVNG 80 (395)
Q Consensus 2 a~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~i~~l~~~l~~i~~~l~~a~~~~~~~~~~~~~Wl~~lr~ 80 (395)
|+.+ +++++.+++.|...+.+..... ...+.-++.|...++.|..++++.+..+...+..-+.-++++.+
T Consensus 3 ~eL~~gaalG~~~~eLlk~v~~~~~k~---------~~fk~~l~~L~sTl~~i~P~i~eI~~~~~eld~~~~ee~e~L~~ 73 (147)
T PF05659_consen 3 AELVGGAALGAVFGELLKAVIDASKKS---------LSFKSILKRLESTLESIIPIIKEIDKLNVELDRPRQEEIERLKE 73 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---------HhhhhHHHHHHHHHHHhhhHHHHHHHHhhhcCCchhHHHHHHHH
Confidence 3444 3467777777777776665544 33455566666677777777777776655555555777889999
Q ss_pred HHHHHHhhhhhhHhhccccccCCCcchhHhhHHHHHHHHHHHHHHHH
Q 047930 81 VIDEAEKFTGVDARANKRCFKGLCPNLKIRRRLSKEAERQKEAIVKV 127 (395)
Q Consensus 81 ~a~d~ed~ld~~~~~~~~~~~~~~~~~~~r~~i~~~i~~~~~~l~~i 127 (395)
...+++++++.+...+ ++++...++.+++|+++.+.+...
T Consensus 74 ~L~~g~~LV~k~sk~~-------r~n~~kk~~y~~Ki~~le~~l~~f 113 (147)
T PF05659_consen 74 LLEKGKELVEKCSKVR-------RWNLYKKPRYARKIEELEESLRRF 113 (147)
T ss_pred HHHHHHHHHHHhcccc-------HHHHHhhHhHHHHHHHHHHHHHHH
Confidence 9999999998765432 355666778889999888887765
No 195
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.20 E-value=0.00054 Score=63.83 Aligned_cols=47 Identities=21% Similarity=0.303 Sum_probs=39.8
Q ss_pred chhchHHHHHHHHHHhc------CCCceEEEEEecCCCcHHHHHHHHHHHhcc
Q 047930 155 AFESRMSTLNDILDALK------NPDVNMLGIYGMGGIGKTTLAKEVARKAEN 201 (395)
Q Consensus 155 ~~~gr~~~~~~l~~~l~------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 201 (395)
.++|.++.++++++++. ....+++.++|++|+||||||+.+.+....
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 57899999999998885 234688999999999999999999987643
No 196
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.16 E-value=0.0038 Score=55.56 Aligned_cols=76 Identities=21% Similarity=0.280 Sum_probs=47.9
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCccccchhhhHHHHHHHHhcCC
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFADKLGLTLHEETESGRARSLCNRLKKEK 254 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 254 (395)
...+.++|.+|+|||+|+..+++....+ -..+++++ ..+++..+...... .. .....+.+.+. +
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~l~~~--g~~v~~it------~~~l~~~l~~~~~~--~~----~~~~~~l~~l~--~ 162 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNELLLR--GKSVLIIT------VADIMSAMKDTFSN--SE----TSEEQLLNDLS--N 162 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEE------HHHHHHHHHHHHhh--cc----ccHHHHHHHhc--c
Confidence 3578899999999999999999987543 23455553 44555555544321 11 11234455554 3
Q ss_pred eEEEEEeCCCCc
Q 047930 255 RILVILDNIWEN 266 (395)
Q Consensus 255 r~LlVlDdv~~~ 266 (395)
.=||||||+...
T Consensus 163 ~dlLvIDDig~~ 174 (244)
T PRK07952 163 VDLLVIDEIGVQ 174 (244)
T ss_pred CCEEEEeCCCCC
Confidence 458999999543
No 197
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.15 E-value=0.0023 Score=67.44 Aligned_cols=105 Identities=19% Similarity=0.271 Sum_probs=56.4
Q ss_pred chhchHHHHHHHHHHhc-------CCC--ceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHH
Q 047930 155 AFESRMSTLNDILDALK-------NPD--VNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGE 225 (395)
Q Consensus 155 ~~~gr~~~~~~l~~~l~-------~~~--~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 225 (395)
.++|.+..++.+...+. +++ ..++.++|+.|+|||+||+.+.+..... -...+-+..+.-.....+
T Consensus 510 ~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~--~~~~~~~d~s~~~~~~~~--- 584 (821)
T CHL00095 510 RIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGS--EDAMIRLDMSEYMEKHTV--- 584 (821)
T ss_pred cCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCC--ccceEEEEchhccccccH---
Confidence 35677777777766654 122 3457799999999999999999865321 122333444332211111
Q ss_pred HHHHhCCCccccchhhhHHHHHHHHhcCCeEEEEEeCCCCc
Q 047930 226 FADKLGLTLHEETESGRARSLCNRLKKEKRILVILDNIWEN 266 (395)
Q Consensus 226 i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~ 266 (395)
..-++.+.... .......+.+.+......+++||++...
T Consensus 585 -~~l~g~~~gyv-g~~~~~~l~~~~~~~p~~VvllDeieka 623 (821)
T CHL00095 585 -SKLIGSPPGYV-GYNEGGQLTEAVRKKPYTVVLFDEIEKA 623 (821)
T ss_pred -HHhcCCCCccc-CcCccchHHHHHHhCCCeEEEECChhhC
Confidence 11122211100 1111224555555333468999999754
No 198
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.15 E-value=0.0027 Score=58.11 Aligned_cols=88 Identities=19% Similarity=0.325 Sum_probs=48.2
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcC-CHHHHHHHHHHHhCCCccccchhhhHHHHHHHHhc
Q 047930 174 DVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQ-DIRKIQGEFADKLGLTLHEETESGRARSLCNRLKK 252 (395)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 252 (395)
+.+++.++|++|+||||++..++.....+..-..+..++..... ...+.+....+.++.+.........+....+.+.
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~~~- 271 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALDRLR- 271 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHHHcc-
Confidence 45699999999999999999998776432111235556553311 2233344444445544332222223334444443
Q ss_pred CCeEEEEEeCC
Q 047930 253 EKRILVILDNI 263 (395)
Q Consensus 253 ~kr~LlVlDdv 263 (395)
+ .=+|++|..
T Consensus 272 ~-~d~vliDt~ 281 (282)
T TIGR03499 272 D-KDLILIDTA 281 (282)
T ss_pred C-CCEEEEeCC
Confidence 2 347777753
No 199
>PRK06696 uridine kinase; Validated
Probab=97.14 E-value=0.0008 Score=59.38 Aligned_cols=43 Identities=26% Similarity=0.349 Sum_probs=34.4
Q ss_pred chHHHHHHHHHHhc---CCCceEEEEEecCCCcHHHHHHHHHHHhc
Q 047930 158 SRMSTLNDILDALK---NPDVNMLGIYGMGGIGKTTLAKEVARKAE 200 (395)
Q Consensus 158 gr~~~~~~l~~~l~---~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (395)
.|.+.+++|.+.+. .+++.+|+|.|.+|+||||||+.+.....
T Consensus 2 ~~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~ 47 (223)
T PRK06696 2 SRKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIK 47 (223)
T ss_pred cHHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35566666766664 45688999999999999999999998764
No 200
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=97.13 E-value=0.035 Score=51.05 Aligned_cols=143 Identities=12% Similarity=0.077 Sum_probs=83.0
Q ss_pred HHHHHHhcCCC-ceEEEEEecCCCcHHHHHHHHHHHhc--------ccCCCCEEEEEEe-CCcCCHHHHHHHHHHHhCCC
Q 047930 164 NDILDALKNPD-VNMLGIYGMGGIGKTTLAKEVARKAE--------NEKLFDQVIFVEV-SQIQDIRKIQGEFADKLGLT 233 (395)
Q Consensus 164 ~~l~~~l~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~--------~~~~f~~~~wv~~-s~~~~~~~~~~~i~~~l~~~ 233 (395)
..+.+.+..++ .++..++|..|.||+++|..+.+..- ...|.+.+.++.. ......+++. ++.+.+...
T Consensus 6 ~~l~~~i~~~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~Ir-~l~~~~~~~ 84 (299)
T PRK07132 6 KFLDNSATQNKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEFL-SAINKLYFS 84 (299)
T ss_pred HHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHHH-HHHHHhccC
Confidence 34445555544 45666999999999999999988752 1122222333321 1222233322 333333221
Q ss_pred ccccchhhhHHHHHHHHhcCCeEEEEEeCCCCcc--ccchhccccCCCCCCcEEEEeecc-hhhhhhcCCCcceeecCCC
Q 047930 234 LHEETESGRARSLCNRLKKEKRILVILDNIWENL--DFQAVGIPHGDGHKGSKVLLTARS-LDVLSRKMDSQQNFSFDVL 310 (395)
Q Consensus 234 ~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iivTtR~-~~va~~~~~~~~~~~l~~L 310 (395)
.- .++.+-++|+|++.... ....+...+....+++.+|++|.+ ..+.......+..+++.++
T Consensus 85 ~~---------------~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l 149 (299)
T PRK07132 85 SF---------------VQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEP 149 (299)
T ss_pred Cc---------------ccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCC
Confidence 10 01467788999986543 344555555444456666665544 4444444566789999999
Q ss_pred ChHHHHHHHHHh
Q 047930 311 KEDEAWSLFKKM 322 (395)
Q Consensus 311 ~~~e~~~lf~~~ 322 (395)
++++....+...
T Consensus 150 ~~~~l~~~l~~~ 161 (299)
T PRK07132 150 DQQKILAKLLSK 161 (299)
T ss_pred CHHHHHHHHHHc
Confidence 999998887764
No 201
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.12 E-value=0.0028 Score=55.93 Aligned_cols=48 Identities=23% Similarity=0.334 Sum_probs=35.4
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhcccC----CCCEEEEEEeCCcCCHHHH
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARKAENEK----LFDQVIFVEVSQIQDIRKI 222 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~----~f~~~~wv~~s~~~~~~~~ 222 (395)
-.++.|+|++|+|||+|+.++........ .-..++|++....++...+
T Consensus 19 g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl 70 (226)
T cd01393 19 GRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERL 70 (226)
T ss_pred CcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHH
Confidence 46899999999999999999987643221 0145789988777665544
No 202
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=97.11 E-value=0.006 Score=60.69 Aligned_cols=152 Identities=20% Similarity=0.173 Sum_probs=82.1
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCccccchhhhHHHHHHHHhcC
Q 047930 174 DVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFADKLGLTLHEETESGRARSLCNRLKKE 253 (395)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 253 (395)
..+.+.++|++|+|||.||+.+++..... | +.+... +++.. .-.. ....+..+...-.+.
T Consensus 275 ~~~giLl~GpPGtGKT~lAkava~~~~~~--f-----i~v~~~----~l~sk--------~vGe-sek~ir~~F~~A~~~ 334 (494)
T COG0464 275 PPKGVLLYGPPGTGKTLLAKAVALESRSR--F-----ISVKGS----ELLSK--------WVGE-SEKNIRELFEKARKL 334 (494)
T ss_pred CCCeeEEECCCCCCHHHHHHHHHhhCCCe--E-----EEeeCH----HHhcc--------ccch-HHHHHHHHHHHHHcC
Confidence 45688999999999999999999965432 3 222221 11110 0001 112233444444446
Q ss_pred CeEEEEEeCCCCccccc-------------hhccccC--CCCCCcEEEEeecchhhhhh-c---CCCcceeecCCCChHH
Q 047930 254 KRILVILDNIWENLDFQ-------------AVGIPHG--DGHKGSKVLLTARSLDVLSR-K---MDSQQNFSFDVLKEDE 314 (395)
Q Consensus 254 kr~LlVlDdv~~~~~~~-------------~l~~~l~--~~~~gs~iivTtR~~~va~~-~---~~~~~~~~l~~L~~~e 314 (395)
.++.|++|+++....+. .+...+. ....+..||-+|........ . ..-...+.+.+-+.++
T Consensus 335 ~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~ 414 (494)
T COG0464 335 APSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEE 414 (494)
T ss_pred CCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCHHH
Confidence 78999999997542221 1111221 22233344555544332211 1 1234588899999999
Q ss_pred HHHHHHHhhCCCCCCCchHHHHHHHHHHcCC
Q 047930 315 AWSLFKKMAGDYIEGSEFKWVAREVAKECAG 345 (395)
Q Consensus 315 ~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~G 345 (395)
..+.|+.+......+....-..+++++.+.|
T Consensus 415 r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~ 445 (494)
T COG0464 415 RLEIFKIHLRDKKPPLAEDVDLEELAEITEG 445 (494)
T ss_pred HHHHHHHHhcccCCcchhhhhHHHHHHHhcC
Confidence 9999999986333211111123455555555
No 203
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.11 E-value=0.044 Score=54.91 Aligned_cols=150 Identities=18% Similarity=0.259 Sum_probs=85.2
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCccccchhhhHHHHHHHHhcCC
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFADKLGLTLHEETESGRARSLCNRLKKEK 254 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 254 (395)
..-|.++|++|+|||.||..+......+ ++++-++ +++.+.+ |. ..+.+..+..+.+.-+
T Consensus 701 ~~giLLyGppGcGKT~la~a~a~~~~~~-------fisvKGP----ElL~KyI---Ga------SEq~vR~lF~rA~~a~ 760 (952)
T KOG0735|consen 701 RTGILLYGPPGCGKTLLASAIASNSNLR-------FISVKGP----ELLSKYI---GA------SEQNVRDLFERAQSAK 760 (952)
T ss_pred ccceEEECCCCCcHHHHHHHHHhhCCee-------EEEecCH----HHHHHHh---cc------cHHHHHHHHHHhhccC
Confidence 4558899999999999999999876533 5666554 2333222 21 1234556777766679
Q ss_pred eEEEEEeCCCCcc-------------ccchhccccCCC---CCCcEEEE-eecchhhhhhcCCC---cceeecCCCChHH
Q 047930 255 RILVILDNIWENL-------------DFQAVGIPHGDG---HKGSKVLL-TARSLDVLSRKMDS---QQNFSFDVLKEDE 314 (395)
Q Consensus 255 r~LlVlDdv~~~~-------------~~~~l~~~l~~~---~~gs~iiv-TtR~~~va~~~~~~---~~~~~l~~L~~~e 314 (395)
+|+|+||+.++.. ..+.+.-.+ ++ -.|.-|+- |||..-+-...... .+.+.-+.-++.+
T Consensus 761 PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTel-DG~Egl~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~e 839 (952)
T KOG0735|consen 761 PCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTEL-DGAEGLDGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPE 839 (952)
T ss_pred CeEEEeccccccCcccCCCCCCchHHHHHHHHHhh-ccccccceEEEEEecCCccccCHhhcCCCccceeeeCCCCCcHH
Confidence 9999999997641 112222222 22 34555554 55543221111111 2233334445667
Q ss_pred HHHHHHHhhCCCC--CCCchHHHHHHHHHHcCCchHH
Q 047930 315 AWSLFKKMAGDYI--EGSEFKWVAREVAKECAGLPVS 349 (395)
Q Consensus 315 ~~~lf~~~~~~~~--~~~~~~~~~~~i~~~c~GlPla 349 (395)
-.++|........ ...+ .+.++.+.+|.--|
T Consensus 840 Rl~il~~ls~s~~~~~~vd----l~~~a~~T~g~tgA 872 (952)
T KOG0735|consen 840 RLEILQVLSNSLLKDTDVD----LECLAQKTDGFTGA 872 (952)
T ss_pred HHHHHHHHhhccCCccccc----hHHHhhhcCCCchh
Confidence 7788877664222 2233 45678888887654
No 204
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=97.09 E-value=0.013 Score=51.25 Aligned_cols=179 Identities=18% Similarity=0.267 Sum_probs=96.4
Q ss_pred CCceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCccccchhhhHHHHHHHHhc
Q 047930 173 PDVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFADKLGLTLHEETESGRARSLCNRLKK 252 (395)
Q Consensus 173 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 252 (395)
.+++-+.++|++|.|||-||+.++++. ++.|+.+|.. ++.+..+-. .......+.--...
T Consensus 179 aQPKGvlLygppgtGktLlaraVahht-------~c~firvsgs----elvqk~ige---------gsrmvrelfvmare 238 (404)
T KOG0728|consen 179 AQPKGVLLYGPPGTGKTLLARAVAHHT-------DCTFIRVSGS----ELVQKYIGE---------GSRMVRELFVMARE 238 (404)
T ss_pred CCCcceEEecCCCCchhHHHHHHHhhc-------ceEEEEechH----HHHHHHhhh---------hHHHHHHHHHHHHh
Confidence 467778899999999999999999753 3456777654 222222210 11122333333334
Q ss_pred CCeEEEEEeCCCCccc----------------cchhccccC--CCCCCcEEEEeecchhhh-hhcC---CCcceeecCCC
Q 047930 253 EKRILVILDNIWENLD----------------FQAVGIPHG--DGHKGSKVLLTARSLDVL-SRKM---DSQQNFSFDVL 310 (395)
Q Consensus 253 ~kr~LlVlDdv~~~~~----------------~~~l~~~l~--~~~~gs~iivTtR~~~va-~~~~---~~~~~~~l~~L 310 (395)
+-+-+|+.|++++.-. .-++...+. ...+.-+||+.|..-++. +... .....|+.++-
T Consensus 239 hapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnridild~allrpgridrkiefp~p 318 (404)
T KOG0728|consen 239 HAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPP 318 (404)
T ss_pred cCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEeccccccccHhhcCCCcccccccCCCC
Confidence 6688999998875410 011222221 123456788877654443 1112 23457888888
Q ss_pred ChHHHHHHHHHhhCC--CCCCCchHHHHHHHHHHcCCchHHHHHHHHHh--hCC----CHHHHHHHHHH
Q 047930 311 KEDEAWSLFKKMAGD--YIEGSEFKWVAREVAKECAGLPVSIVTVARAL--RNK----RLFEWKDALEQ 371 (395)
Q Consensus 311 ~~~e~~~lf~~~~~~--~~~~~~~~~~~~~i~~~c~GlPlai~~i~~~l--~~~----~~~~w~~~l~~ 371 (395)
+++.-.++++-+... ...--++..+++++.-..|.--.++-+=|+.. +++ +.++++-+...
T Consensus 319 ~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk~vcteagm~alrerrvhvtqedfemav~k 387 (404)
T KOG0728|consen 319 NEEARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAK 387 (404)
T ss_pred CHHHHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchhhhhhhhhhHHHHHHhhccccHHHHHHHHHH
Confidence 887778888755532 12223444444444332222223333334443 332 66777766554
No 205
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.09 E-value=0.0022 Score=59.26 Aligned_cols=85 Identities=21% Similarity=0.317 Sum_probs=53.0
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCccc------cchhhhHHHHH
Q 047930 174 DVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFADKLGLTLHE------ETESGRARSLC 247 (395)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~------~~~~~~~~~l~ 247 (395)
.-+++-|+|++|+|||||+.++....... -..++|+...+.++.. .+++++...+. ....+.+..+.
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~~~~--g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~~ 126 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEAQKA--GGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIAE 126 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 34688899999999999999987765432 3457788776655542 35555543221 11222233333
Q ss_pred HHHhcCCeEEEEEeCCCC
Q 047930 248 NRLKKEKRILVILDNIWE 265 (395)
Q Consensus 248 ~~l~~~kr~LlVlDdv~~ 265 (395)
..+..+..-++|+|.+..
T Consensus 127 ~li~~~~~~lIVIDSv~a 144 (321)
T TIGR02012 127 TLVRSGAVDIIVVDSVAA 144 (321)
T ss_pred HHhhccCCcEEEEcchhh
Confidence 333445667999999853
No 206
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=97.06 E-value=0.0041 Score=51.99 Aligned_cols=24 Identities=29% Similarity=0.512 Sum_probs=22.0
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHh
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
.++.|.|++|+|||||++.++.+.
T Consensus 5 ~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 5 LLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhc
Confidence 578899999999999999999876
No 207
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.06 E-value=0.0046 Score=51.14 Aligned_cols=39 Identities=28% Similarity=0.454 Sum_probs=30.1
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcC
Q 047930 177 MLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQ 217 (395)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~ 217 (395)
++.|+|++|+||||++..+...... .-..++|++.....
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~--~~~~v~~~~~e~~~ 39 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIAT--KGGKVVYVDIEEEI 39 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHh--cCCEEEEEECCcch
Confidence 3679999999999999999887653 23557788776554
No 208
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=97.05 E-value=0.0039 Score=57.77 Aligned_cols=89 Identities=19% Similarity=0.280 Sum_probs=56.7
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhccc----CCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCcccc----------c--
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARKAENE----KLFDQVIFVEVSQIQDIRKIQGEFADKLGLTLHEE----------T-- 238 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~----~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~----------~-- 238 (395)
-.++-|+|++|+|||+|+.+++-..... ..-..++|++....++++.+. ++++.++...... +
T Consensus 96 G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~-~~a~~~g~d~~~~l~~i~~~~~~~~e 174 (313)
T TIGR02238 96 MSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIR-AIAERFGVDPDAVLDNILYARAYTSE 174 (313)
T ss_pred CeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHH-HHHHHcCCChHHhcCcEEEecCCCHH
Confidence 4678899999999999999877543211 112358999999988888765 4566665432210 0
Q ss_pred -hhhhHHHHHHHHhcCCeEEEEEeCCC
Q 047930 239 -ESGRARSLCNRLKKEKRILVILDNIW 264 (395)
Q Consensus 239 -~~~~~~~l~~~l~~~kr~LlVlDdv~ 264 (395)
....+..+...+..++--|||+|.+.
T Consensus 175 ~~~~~l~~l~~~i~~~~~~LvVIDSis 201 (313)
T TIGR02238 175 HQMELLDYLAAKFSEEPFRLLIVDSIM 201 (313)
T ss_pred HHHHHHHHHHHHhhccCCCEEEEEcch
Confidence 11123334444444455689999985
No 209
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=97.04 E-value=0.049 Score=54.46 Aligned_cols=198 Identities=19% Similarity=0.206 Sum_probs=117.7
Q ss_pred hhchHHHHHHHHHHhc----C-CCceEEEEEecCCCcHHHHHHHHHHHhc---cc---CCCCEEEEEEeCCcCCHHHHHH
Q 047930 156 FESRMSTLNDILDALK----N-PDVNMLGIYGMGGIGKTTLAKEVARKAE---NE---KLFDQVIFVEVSQIQDIRKIQG 224 (395)
Q Consensus 156 ~~gr~~~~~~l~~~l~----~-~~~~vi~I~G~~GiGKTtLa~~v~~~~~---~~---~~f~~~~wv~~s~~~~~~~~~~ 224 (395)
+.+|+.+..+|-..+. + ..-..+-|.|-+|+|||..+..|.+... .+ ..|+ .+.++.-.-..+.+++.
T Consensus 398 LpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-yveINgm~l~~~~~~Y~ 476 (767)
T KOG1514|consen 398 LPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD-YVEINGLRLASPREIYE 476 (767)
T ss_pred ccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc-EEEEcceeecCHHHHHH
Confidence 4567777777766654 3 3345899999999999999999998543 11 1243 45666666667999999
Q ss_pred HHHHHhCCCccccchhhhHHHHHHHHh----cCCeEEEEEeCCCCccc-cch-hccccC-CCCCCcEEEEeec--chhhh
Q 047930 225 EFADKLGLTLHEETESGRARSLCNRLK----KEKRILVILDNIWENLD-FQA-VGIPHG-DGHKGSKVLLTAR--SLDVL 295 (395)
Q Consensus 225 ~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~~~-~~~-l~~~l~-~~~~gs~iivTtR--~~~va 295 (395)
.|..++....... ...+..+..+.. ..+.+++++|+++..-. -++ +...|. ...++|+++|.+= ..+.+
T Consensus 477 ~I~~~lsg~~~~~--~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaNTmdlP 554 (767)
T KOG1514|consen 477 KIWEALSGERVTW--DAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIANTMDLP 554 (767)
T ss_pred HHHHhcccCcccH--HHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEecccccCH
Confidence 9999987543321 222334444443 25678999999865422 111 222332 2456777665442 22222
Q ss_pred hhcC-------CCcceeecCCCChHHHHHHHHHhhCCC--CCCCchHHHHHHHHHHcCCchHHHHHHHHH
Q 047930 296 SRKM-------DSQQNFSFDVLKEDEAWSLFKKMAGDY--IEGSEFKWVAREVAKECAGLPVSIVTVARA 356 (395)
Q Consensus 296 ~~~~-------~~~~~~~l~~L~~~e~~~lf~~~~~~~--~~~~~~~~~~~~i~~~c~GlPlai~~i~~~ 356 (395)
...+ -....+.+.|.+.++..++...++.+. ..+...+-++++++...|-.-.|+...-+.
T Consensus 555 Er~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic~RA 624 (767)
T KOG1514|consen 555 ERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDICRRA 624 (767)
T ss_pred HHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 1111 123467888888888888888777432 223333445566666565555555554443
No 210
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=97.01 E-value=0.0052 Score=57.56 Aligned_cols=85 Identities=28% Similarity=0.371 Sum_probs=58.3
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCccc--cchhhhHHHHHHHHhc
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFADKLGLTLHE--ETESGRARSLCNRLKK 252 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~l~~~l~~ 252 (395)
-.+|.|-|.+|+|||||.-++..+...+. .++||+-..+ ..+ .+--++.++.+.+. .-....++.+.+.+.+
T Consensus 93 Gs~iLIgGdPGIGKSTLLLQva~~lA~~~---~vLYVsGEES--~~Q-iklRA~RL~~~~~~l~l~aEt~~e~I~~~l~~ 166 (456)
T COG1066 93 GSVILIGGDPGIGKSTLLLQVAARLAKRG---KVLYVSGEES--LQQ-IKLRADRLGLPTNNLYLLAETNLEDIIAELEQ 166 (456)
T ss_pred ccEEEEccCCCCCHHHHHHHHHHHHHhcC---cEEEEeCCcC--HHH-HHHHHHHhCCCccceEEehhcCHHHHHHHHHh
Confidence 35788999999999999999999887553 5777765443 322 22334556543322 1123346677788877
Q ss_pred CCeEEEEEeCCCC
Q 047930 253 EKRILVILDNIWE 265 (395)
Q Consensus 253 ~kr~LlVlDdv~~ 265 (395)
.++-|+|+|-+..
T Consensus 167 ~~p~lvVIDSIQT 179 (456)
T COG1066 167 EKPDLVVIDSIQT 179 (456)
T ss_pred cCCCEEEEeccce
Confidence 8899999999854
No 211
>PRK09354 recA recombinase A; Provisional
Probab=97.01 E-value=0.0029 Score=58.99 Aligned_cols=85 Identities=22% Similarity=0.320 Sum_probs=54.4
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCccc------cchhhhHHHHH
Q 047930 174 DVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFADKLGLTLHE------ETESGRARSLC 247 (395)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~------~~~~~~~~~l~ 247 (395)
.-+++-|+|++|+|||||+.+++...... -..++|+.....++. ..++.++.+.+. ......+..+.
T Consensus 59 ~G~IteI~G~~GsGKTtLal~~~~~~~~~--G~~~~yId~E~s~~~-----~~a~~lGvdld~lli~qp~~~Eq~l~i~~ 131 (349)
T PRK09354 59 RGRIVEIYGPESSGKTTLALHAIAEAQKA--GGTAAFIDAEHALDP-----VYAKKLGVDIDNLLVSQPDTGEQALEIAD 131 (349)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEECCccchHH-----HHHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 34688899999999999999988765432 355789988777665 245555543211 11222233333
Q ss_pred HHHhcCCeEEEEEeCCCC
Q 047930 248 NRLKKEKRILVILDNIWE 265 (395)
Q Consensus 248 ~~l~~~kr~LlVlDdv~~ 265 (395)
..+..+..-+||+|.+-.
T Consensus 132 ~li~s~~~~lIVIDSvaa 149 (349)
T PRK09354 132 TLVRSGAVDLIVVDSVAA 149 (349)
T ss_pred HHhhcCCCCEEEEeChhh
Confidence 333445667999999853
No 212
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=97.01 E-value=0.007 Score=54.49 Aligned_cols=90 Identities=24% Similarity=0.335 Sum_probs=56.6
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhccc----CCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCccc-------------c
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARKAENE----KLFDQVIFVEVSQIQDIRKIQGEFADKLGLTLHE-------------E 237 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~----~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-------------~ 237 (395)
-.+.=|+|.+|+|||.|+.+++-..... ..-..++|++....++...+. +|++..+..... .
T Consensus 38 g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~~~~~~~l~~I~v~~~~~~~ 116 (256)
T PF08423_consen 38 GSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFGLDPEEILDNIFVIRVFDLE 116 (256)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTTS-HHHHHHTEEEEE-SSHH
T ss_pred CcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccccccchhhhceeeeecCCHH
Confidence 4578899999999999999887654321 112459999999999887764 566665433211 0
Q ss_pred chhhhHHHHHHHHhcCCeEEEEEeCCCC
Q 047930 238 TESGRARSLCNRLKKEKRILVILDNIWE 265 (395)
Q Consensus 238 ~~~~~~~~l~~~l~~~kr~LlVlDdv~~ 265 (395)
.....+..+...+.+++=-|||+|.+-.
T Consensus 117 ~l~~~L~~l~~~l~~~~ikLIVIDSIaa 144 (256)
T PF08423_consen 117 ELLELLEQLPKLLSESKIKLIVIDSIAA 144 (256)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETSSH
T ss_pred HHHHHHHHHHhhccccceEEEEecchHH
Confidence 0111233344444445666999999843
No 213
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.00 E-value=0.0039 Score=55.08 Aligned_cols=45 Identities=24% Similarity=0.379 Sum_probs=34.5
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHH
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKI 222 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~ 222 (395)
-.++.|+|.+|+|||+++.+++...... -..++|++.. .++...+
T Consensus 23 g~i~~i~G~~GsGKT~l~~~la~~~~~~--~~~v~yi~~e-~~~~~r~ 67 (225)
T PRK09361 23 GTITQIYGPPGSGKTNICLQLAVEAAKN--GKKVIYIDTE-GLSPERF 67 (225)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEECC-CCCHHHH
Confidence 4689999999999999999998776432 3568899887 5554443
No 214
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.00 E-value=0.0027 Score=58.70 Aligned_cols=84 Identities=25% Similarity=0.339 Sum_probs=52.4
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCccc------cchhhhHHHHH
Q 047930 174 DVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFADKLGLTLHE------ETESGRARSLC 247 (395)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~------~~~~~~~~~l~ 247 (395)
.-+++-|+|++|+|||||+.+++-..... -..++|++....+++. .++.++.+.+. .+..+.+..+.
T Consensus 54 ~G~iteI~Gp~GsGKTtLal~~~~~~~~~--g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~~ 126 (325)
T cd00983 54 KGRIIEIYGPESSGKTTLALHAIAEAQKL--GGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIAD 126 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHHH
Confidence 34688899999999999999988665432 3457899887766542 34445433211 11222233333
Q ss_pred HHHhcCCeEEEEEeCCC
Q 047930 248 NRLKKEKRILVILDNIW 264 (395)
Q Consensus 248 ~~l~~~kr~LlVlDdv~ 264 (395)
..+..+.--++|+|.+-
T Consensus 127 ~li~s~~~~lIVIDSva 143 (325)
T cd00983 127 SLVRSGAVDLIVVDSVA 143 (325)
T ss_pred HHHhccCCCEEEEcchH
Confidence 33344566799999975
No 215
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.00 E-value=0.0025 Score=59.42 Aligned_cols=100 Identities=17% Similarity=0.223 Sum_probs=55.2
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCccccchhhhHHHHHHHHhcCCe
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFADKLGLTLHEETESGRARSLCNRLKKEKR 255 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr 255 (395)
..+.++|..|+|||.||..+++....+. ..++|+++ .+++..+...-. . .. . ......+.+. .-
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g--~~V~y~t~------~~l~~~l~~~~~-~--~~--~-~~~~~~~~l~--~~ 247 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRG--KSVIYRTA------DELIEILREIRF-N--ND--K-ELEEVYDLLI--NC 247 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCC--CeEEEEEH------HHHHHHHHHHHh-c--cc--h-hHHHHHHHhc--cC
Confidence 6789999999999999999999876432 34666654 334444433211 0 00 0 1111134443 23
Q ss_pred EEEEEeCCCCc--cccc--hhccccCC-CCCCcEEEEeecc
Q 047930 256 ILVILDNIWEN--LDFQ--AVGIPHGD-GHKGSKVLLTARS 291 (395)
Q Consensus 256 ~LlVlDdv~~~--~~~~--~l~~~l~~-~~~gs~iivTtR~ 291 (395)
=||||||+... ..|. .+...+.. -..+..+||||..
T Consensus 248 DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl 288 (329)
T PRK06835 248 DLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNL 288 (329)
T ss_pred CEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 58999999543 2332 22222211 1124458888874
No 216
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.99 E-value=0.0027 Score=53.73 Aligned_cols=36 Identities=31% Similarity=0.551 Sum_probs=28.4
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEE
Q 047930 174 DVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFV 211 (395)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv 211 (395)
+..+|.+.|+.|+||||+++.++...... +...+++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~~~--~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLKLK--YSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHc--CCcEEEE
Confidence 45689999999999999999999887533 4455554
No 217
>PHA02244 ATPase-like protein
Probab=96.97 E-value=0.012 Score=55.13 Aligned_cols=35 Identities=23% Similarity=0.315 Sum_probs=25.8
Q ss_pred HHHHHHhcCCCceEEEEEecCCCcHHHHHHHHHHHhc
Q 047930 164 NDILDALKNPDVNMLGIYGMGGIGKTTLAKEVARKAE 200 (395)
Q Consensus 164 ~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (395)
..+..++..+. -|.|+|+.|+|||+||+.++....
T Consensus 110 ~ri~r~l~~~~--PVLL~GppGtGKTtLA~aLA~~lg 144 (383)
T PHA02244 110 ADIAKIVNANI--PVFLKGGAGSGKNHIAEQIAEALD 144 (383)
T ss_pred HHHHHHHhcCC--CEEEECCCCCCHHHHHHHHHHHhC
Confidence 34445554433 367899999999999999998754
No 218
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.97 E-value=0.0066 Score=53.76 Aligned_cols=52 Identities=19% Similarity=0.212 Sum_probs=34.0
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHHHHhC
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFADKLG 231 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 231 (395)
-.++.|.|..|+||||++.++......+. ..++|++.. .+..++++.+ .+++
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~~~~~g--~~~~yi~~e--~~~~~~~~~~-~~~g 75 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYGFLQNG--YSVSYVSTQ--LTTTEFIKQM-MSLG 75 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhCC--CcEEEEeCC--CCHHHHHHHH-HHhC
Confidence 34899999999999999877665543222 335666643 3456666666 3344
No 219
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.95 E-value=0.007 Score=54.50 Aligned_cols=89 Identities=19% Similarity=0.364 Sum_probs=55.4
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcC-CHHHHHHHHHHHhCCC--------ccccchh-----h
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQ-DIRKIQGEFADKLGLT--------LHEETES-----G 241 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~--------~~~~~~~-----~ 241 (395)
.-++|.|.+|+|||||+..+++....+ +-+.++++.+.+.. ...++.+++...-... .++.... .
T Consensus 70 Qr~~If~~~G~GKTtLa~~i~~~i~~~-~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~~~ 148 (274)
T cd01133 70 GKIGLFGGAGVGKTVLIMELINNIAKA-HGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARVAL 148 (274)
T ss_pred CEEEEecCCCCChhHHHHHHHHHHHhc-CCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHH
Confidence 348899999999999999999987653 12456677776654 3456666665432111 1111111 1
Q ss_pred hHHHHHHHHh-c-CCeEEEEEeCCCC
Q 047930 242 RARSLCNRLK-K-EKRILVILDNIWE 265 (395)
Q Consensus 242 ~~~~l~~~l~-~-~kr~LlVlDdv~~ 265 (395)
..-.+.+++. + ++.+||++||+-.
T Consensus 149 ~a~~~AEyfr~~~g~~Vl~~~Dsltr 174 (274)
T cd01133 149 TGLTMAEYFRDEEGQDVLLFIDNIFR 174 (274)
T ss_pred HHHHHHHHHHHhcCCeEEEEEeChhH
Confidence 1224455553 3 8999999999943
No 220
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.92 E-value=0.0052 Score=51.52 Aligned_cols=26 Identities=27% Similarity=0.360 Sum_probs=22.8
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhcc
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARKAEN 201 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~ 201 (395)
..+.++|++|.||||+.+.+|...+.
T Consensus 29 ef~fl~GpSGAGKSTllkLi~~~e~p 54 (223)
T COG2884 29 EFVFLTGPSGAGKSTLLKLIYGEERP 54 (223)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhhcC
Confidence 46889999999999999999987653
No 221
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.92 E-value=0.0064 Score=56.90 Aligned_cols=89 Identities=17% Similarity=0.212 Sum_probs=56.0
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhccc----CCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCcccc---------ch-h
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARKAENE----KLFDQVIFVEVSQIQDIRKIQGEFADKLGLTLHEE---------TE-S 240 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~----~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~---------~~-~ 240 (395)
-.+.-|+|.+|+|||+|+.+++-..... ..-..++|++....|+++.+.+ +++.++...... .+ .
T Consensus 126 G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~d~~~~l~~I~~~~~~~~e 204 (344)
T PLN03187 126 RCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGMDADAVLDNIIYARAYTYE 204 (344)
T ss_pred CeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCCChhhhcCeEEEecCCCHH
Confidence 4677799999999999999986443211 1124589999999998887654 566665542210 01 1
Q ss_pred ---hhHHHHHHHHhcCCeEEEEEeCCC
Q 047930 241 ---GRARSLCNRLKKEKRILVILDNIW 264 (395)
Q Consensus 241 ---~~~~~l~~~l~~~kr~LlVlDdv~ 264 (395)
..+..+...+...+--|||+|.+-
T Consensus 205 ~~~~~l~~l~~~i~~~~~~LvVIDSit 231 (344)
T PLN03187 205 HQYNLLLGLAAKMAEEPFRLLIVDSVI 231 (344)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEeCcH
Confidence 122333333433445689999985
No 222
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=96.90 E-value=0.0082 Score=55.85 Aligned_cols=91 Identities=18% Similarity=0.271 Sum_probs=55.9
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhcccC----CCCEEEEEEeCCcCCHHHHHHHHHHHhCCCccc-------------
Q 047930 174 DVNMLGIYGMGGIGKTTLAKEVARKAENEK----LFDQVIFVEVSQIQDIRKIQGEFADKLGLTLHE------------- 236 (395)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~----~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~------------- 236 (395)
.-.++-|+|++|+|||+++.+++-...... .-..++|++....++...+. ++++.++.....
T Consensus 94 ~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~gl~~~~~~~~i~i~~~~~~ 172 (310)
T TIGR02236 94 TQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEARGLDPDEVLKNIYVARAYNS 172 (310)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHcCCCHHHHhhceEEEecCCH
Confidence 357888999999999999999987643211 11268999998888877654 445555433211
Q ss_pred cchhhhHHHHHHHHhcCC--eEEEEEeCCCC
Q 047930 237 ETESGRARSLCNRLKKEK--RILVILDNIWE 265 (395)
Q Consensus 237 ~~~~~~~~~l~~~l~~~k--r~LlVlDdv~~ 265 (395)
......++.+.+.+...+ .-+||+|.+-.
T Consensus 173 ~~~~~lld~l~~~i~~~~~~~~lVVIDSisa 203 (310)
T TIGR02236 173 NHQMLLVEKAEDLIKELNNPVKLLIVDSLTS 203 (310)
T ss_pred HHHHHHHHHHHHHHHhcCCCceEEEEecchH
Confidence 001112334444554322 44888988743
No 223
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.90 E-value=0.0068 Score=55.91 Aligned_cols=29 Identities=38% Similarity=0.521 Sum_probs=24.8
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhccc
Q 047930 174 DVNMLGIYGMGGIGKTTLAKEVARKAENE 202 (395)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 202 (395)
..+-|.++|++|+|||-||+.+..+....
T Consensus 126 p~kGiLL~GPpG~GKTmlAKA~Akeaga~ 154 (386)
T KOG0737|consen 126 PPKGILLYGPPGTGKTMLAKAIAKEAGAN 154 (386)
T ss_pred CCccceecCCCCchHHHHHHHHHHHcCCC
Confidence 35668899999999999999999987643
No 224
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=96.88 E-value=0.0084 Score=53.13 Aligned_cols=29 Identities=31% Similarity=0.425 Sum_probs=25.7
Q ss_pred CCceEEEEEecCCCcHHHHHHHHHHHhcc
Q 047930 173 PDVNMLGIYGMGGIGKTTLAKEVARKAEN 201 (395)
Q Consensus 173 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 201 (395)
++..+++|.|+.|+|||||++.+......
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~ 59 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQ 59 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 56789999999999999999999987654
No 225
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.88 E-value=0.0088 Score=53.29 Aligned_cols=49 Identities=14% Similarity=0.253 Sum_probs=35.2
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHH
Q 047930 174 DVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEF 226 (395)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 226 (395)
.-.++.|.|.+|+|||+++.++......+ -..++|++... ++.++.+.+
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~~--ge~~lyvs~ee--~~~~i~~~~ 68 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQM--GEPGIYVALEE--HPVQVRRNM 68 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc--CCcEEEEEeeC--CHHHHHHHH
Confidence 34688999999999999999987654322 34578888755 455655553
No 226
>PRK04296 thymidine kinase; Provisional
Probab=96.88 E-value=0.0016 Score=55.88 Aligned_cols=110 Identities=19% Similarity=0.143 Sum_probs=59.1
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCccc---cchhhhHHHHHHHHhc
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFADKLGLTLHE---ETESGRARSLCNRLKK 252 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~l~~~l~~ 252 (395)
.++.|+|+.|.||||++..+....... -..++.+. ..++.......+++.++..... ....+....+.+ ..
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~--g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~--~~ 76 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEER--GMKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE--EG 76 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHc--CCeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh--hC
Confidence 467899999999999999998876533 22233332 1112222233455555543222 111122222222 22
Q ss_pred CCeEEEEEeCCCCc--cccchhccccCCCCCCcEEEEeecchh
Q 047930 253 EKRILVILDNIWEN--LDFQAVGIPHGDGHKGSKVLLTARSLD 293 (395)
Q Consensus 253 ~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR~~~ 293 (395)
++.-+||+|.+.-. ++...+...+ ...|..||+|.++.+
T Consensus 77 ~~~dvviIDEaq~l~~~~v~~l~~~l--~~~g~~vi~tgl~~~ 117 (190)
T PRK04296 77 EKIDCVLIDEAQFLDKEQVVQLAEVL--DDLGIPVICYGLDTD 117 (190)
T ss_pred CCCCEEEEEccccCCHHHHHHHHHHH--HHcCCeEEEEecCcc
Confidence 34458999999543 2222222221 235778999999743
No 227
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.88 E-value=0.0055 Score=59.99 Aligned_cols=88 Identities=23% Similarity=0.327 Sum_probs=47.4
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCc-CCHHHHHHHHHHHhCCCccccchhhhHHHHHHHHhcC
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQI-QDIRKIQGEFADKLGLTLHEETESGRARSLCNRLKKE 253 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 253 (395)
..+|+|+|++|+||||++..+......+.....+..++.... ....+.+......++...........+..+.+.+.
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~-- 427 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLR-- 427 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhc--
Confidence 478999999999999999998876443221233555554221 11223333334444433322222223334444443
Q ss_pred CeEEEEEeCCC
Q 047930 254 KRILVILDNIW 264 (395)
Q Consensus 254 kr~LlVlDdv~ 264 (395)
..=+|++|..-
T Consensus 428 ~~DLVLIDTaG 438 (559)
T PRK12727 428 DYKLVLIDTAG 438 (559)
T ss_pred cCCEEEecCCC
Confidence 24577888773
No 228
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=96.87 E-value=0.0012 Score=68.48 Aligned_cols=184 Identities=18% Similarity=0.141 Sum_probs=88.2
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHh-cccCCCCEEEEEEeCCc--CC-HHHHH------HHHHHHhCCCccccchhhhH
Q 047930 174 DVNMLGIYGMGGIGKTTLAKEVARKA-ENEKLFDQVIFVEVSQI--QD-IRKIQ------GEFADKLGLTLHEETESGRA 243 (395)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~-~~~~~f~~~~wv~~s~~--~~-~~~~~------~~i~~~l~~~~~~~~~~~~~ 243 (395)
+..++.|+|+.|.||||+.+.+.... ..+.. ++|.+... .. ...++ ..+...+..- .......
T Consensus 321 ~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G----~~Vpa~~~~~~~~~d~i~~~i~~~~si~~~LStf---S~~m~~~ 393 (771)
T TIGR01069 321 EKRVLAITGPNTGGKTVTLKTLGLLALMFQSG----IPIPANEHSEIPYFEEIFADIGDEQSIEQNLSTF---SGHMKNI 393 (771)
T ss_pred CceEEEEECCCCCCchHHHHHHHHHHHHHHhC----CCccCCccccccchhheeeecChHhHHhhhhhHH---HHHHHHH
Confidence 44689999999999999999987651 11110 01111110 00 00000 1111111000 0011112
Q ss_pred HHHHHHHhcCCeEEEEEeCCCCcccc---chh----ccccCCCCCCcEEEEeecchhhhhhcCCCcceeecC-CCChHHH
Q 047930 244 RSLCNRLKKEKRILVILDNIWENLDF---QAV----GIPHGDGHKGSKVLLTARSLDVLSRKMDSQQNFSFD-VLKEDEA 315 (395)
Q Consensus 244 ~~l~~~l~~~kr~LlVlDdv~~~~~~---~~l----~~~l~~~~~gs~iivTtR~~~va~~~~~~~~~~~l~-~L~~~e~ 315 (395)
..+...+ ..+-|++||+.-...+. ..+ ...+ ...|+.+|+||....+.........+.... .++ ++.
T Consensus 394 ~~il~~~--~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l--~~~g~~viitTH~~eL~~~~~~~~~v~~~~~~~d-~~~ 468 (771)
T TIGR01069 394 SAILSKT--TENSLVLFDELGAGTDPDEGSALAISILEYL--LKQNAQVLITTHYKELKALMYNNEGVENASVLFD-EET 468 (771)
T ss_pred HHHHHhc--CCCcEEEecCCCCCCCHHHHHHHHHHHHHHH--HhcCCEEEEECChHHHHHHhcCCCCeEEeEEEEc-CCC
Confidence 2222222 46899999998654221 112 2222 135788999999876642211111111110 011 111
Q ss_pred HHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHHHHHHHHHhhCCCHHHHHHHHHHhcC
Q 047930 316 WSLFKKMAGDYIEGSEFKWVAREVAKECAGLPVSIVTVARALRNKRLFEWKDALEQLRR 374 (395)
Q Consensus 316 ~~lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~i~~~l~~~~~~~w~~~l~~l~~ 374 (395)
.. |..++-...+. ...+-+|++++ |+|-.+..-|..+......+++.++..|..
T Consensus 469 l~-p~Ykl~~G~~g---~S~a~~iA~~~-Glp~~ii~~A~~~~~~~~~~~~~li~~L~~ 522 (771)
T TIGR01069 469 LS-PTYKLLKGIPG---ESYAFEIAQRY-GIPHFIIEQAKTFYGEFKEEINVLIEKLSA 522 (771)
T ss_pred Cc-eEEEECCCCCC---CcHHHHHHHHh-CcCHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 11 11111111111 12477788877 899999888888875555567777766543
No 229
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=96.86 E-value=0.0075 Score=55.07 Aligned_cols=28 Identities=21% Similarity=0.213 Sum_probs=23.5
Q ss_pred CCCceEEEEEecCCCcHHHHHHHHHHHh
Q 047930 172 NPDVNMLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 172 ~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
...+.+|+|.|..|+||||+|+.+..-.
T Consensus 59 ~~~p~IIGIaG~~GSGKSTlar~L~~ll 86 (290)
T TIGR00554 59 AKIPYIISIAGSVAVGKSTTARILQALL 86 (290)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 3567899999999999999998876544
No 230
>PRK06547 hypothetical protein; Provisional
Probab=96.85 E-value=0.0019 Score=54.39 Aligned_cols=35 Identities=34% Similarity=0.336 Sum_probs=28.4
Q ss_pred HHHHhcCCCceEEEEEecCCCcHHHHHHHHHHHhc
Q 047930 166 ILDALKNPDVNMLGIYGMGGIGKTTLAKEVARKAE 200 (395)
Q Consensus 166 l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (395)
+...+......+|.|.|++|+||||+|+.+.+...
T Consensus 6 ~~~~~~~~~~~~i~i~G~~GsGKTt~a~~l~~~~~ 40 (172)
T PRK06547 6 IAARLCGGGMITVLIDGRSGSGKTTLAGALAARTG 40 (172)
T ss_pred HHHHhhcCCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 33445567788999999999999999999988643
No 231
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=96.85 E-value=0.0066 Score=53.34 Aligned_cols=24 Identities=29% Similarity=0.457 Sum_probs=21.5
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhc
Q 047930 177 MLGIYGMGGIGKTTLAKEVARKAE 200 (395)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~~ 200 (395)
+|+|.|.+|+||||+|+.+.....
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~ 24 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLS 24 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHh
Confidence 589999999999999999998764
No 232
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.84 E-value=0.0018 Score=52.68 Aligned_cols=46 Identities=33% Similarity=0.453 Sum_probs=36.2
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCcc
Q 047930 177 MLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFADKLGLTLH 235 (395)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~ 235 (395)
+|.|.|++|+||||+|+.+.++..-. + .+...++++|++..+.+..
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~----~---------vsaG~iFR~~A~e~gmsl~ 47 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLK----L---------VSAGTIFREMARERGMSLE 47 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCc----e---------eeccHHHHHHHHHcCCCHH
Confidence 68999999999999999999886532 1 1345788999998887543
No 233
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=96.84 E-value=0.0085 Score=54.22 Aligned_cols=123 Identities=22% Similarity=0.184 Sum_probs=66.7
Q ss_pred HHHHHhc-CCCceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHHHHhCC-Ccc-------
Q 047930 165 DILDALK-NPDVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFADKLGL-TLH------- 235 (395)
Q Consensus 165 ~l~~~l~-~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~-~~~------- 235 (395)
.++..+. ..+...++|.|+.|+|||||.+.+...... ....+++.-..- ...+-..++...... +..
T Consensus 100 ~~l~~l~~~~~~~~~~i~g~~g~GKttl~~~l~~~~~~---~~G~i~~~g~~v-~~~d~~~ei~~~~~~~~q~~~~~r~~ 175 (270)
T TIGR02858 100 KLLPYLVRNNRVLNTLIISPPQCGKTTLLRDLARILST---GISQLGLRGKKV-GIVDERSEIAGCVNGVPQHDVGIRTD 175 (270)
T ss_pred HHHHHHHhCCCeeEEEEEcCCCCCHHHHHHHHhCccCC---CCceEEECCEEe-ecchhHHHHHHHhccccccccccccc
Confidence 3333343 344578999999999999999999976542 223333321110 000111233322211 111
Q ss_pred ccchhhhHHHHHHHHhcCCeEEEEEeCCCCccccchhccccCCCCCCcEEEEeecchhh
Q 047930 236 EETESGRARSLCNRLKKEKRILVILDNIWENLDFQAVGIPHGDGHKGSKVLLTARSLDV 294 (395)
Q Consensus 236 ~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v 294 (395)
..........+...+....+-++++|++...+.+..+...+ ..|..+|+||.+..+
T Consensus 176 v~~~~~k~~~~~~~i~~~~P~villDE~~~~e~~~~l~~~~---~~G~~vI~ttH~~~~ 231 (270)
T TIGR02858 176 VLDGCPKAEGMMMLIRSMSPDVIVVDEIGREEDVEALLEAL---HAGVSIIATAHGRDV 231 (270)
T ss_pred ccccchHHHHHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHH---hCCCEEEEEechhHH
Confidence 01111112234444444568899999997666555554443 247789999997655
No 234
>PRK07667 uridine kinase; Provisional
Probab=96.80 E-value=0.0019 Score=55.56 Aligned_cols=37 Identities=27% Similarity=0.530 Sum_probs=28.8
Q ss_pred HHHHHHhc--CCCceEEEEEecCCCcHHHHHHHHHHHhc
Q 047930 164 NDILDALK--NPDVNMLGIYGMGGIGKTTLAKEVARKAE 200 (395)
Q Consensus 164 ~~l~~~l~--~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (395)
+.+.+.+. .++..+|+|.|.+|+||||+|+.+.....
T Consensus 4 ~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l~ 42 (193)
T PRK07667 4 NELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENMK 42 (193)
T ss_pred HHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34444444 34568999999999999999999998764
No 235
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.79 E-value=0.0011 Score=60.07 Aligned_cols=87 Identities=18% Similarity=0.270 Sum_probs=46.2
Q ss_pred HHHHHhcCCCceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHHHH-hCCCccccchhhhH
Q 047930 165 DILDALKNPDVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFADK-LGLTLHEETESGRA 243 (395)
Q Consensus 165 ~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~-l~~~~~~~~~~~~~ 243 (395)
.+++.+...+. -+.++|+.|+|||++++......... .| ...-++.+...+...++ .+++. +...... .-..
T Consensus 24 ~ll~~l~~~~~-pvLl~G~~GtGKT~li~~~l~~l~~~-~~-~~~~~~~s~~Tts~~~q-~~ie~~l~k~~~~-~~gP-- 96 (272)
T PF12775_consen 24 YLLDLLLSNGR-PVLLVGPSGTGKTSLIQNFLSSLDSD-KY-LVITINFSAQTTSNQLQ-KIIESKLEKRRGR-VYGP-- 96 (272)
T ss_dssp HHHHHHHHCTE-EEEEESSTTSSHHHHHHHHHHCSTTC-CE-EEEEEES-TTHHHHHHH-HCCCTTECECTTE-EEEE--
T ss_pred HHHHHHHHcCC-cEEEECCCCCchhHHHHhhhccCCcc-cc-ceeEeeccCCCCHHHHH-HHHhhcEEcCCCC-CCCC--
Confidence 34454444444 45799999999999999988754322 11 23345555544444332 22221 1100000 0000
Q ss_pred HHHHHHHhcCCeEEEEEeCCCC
Q 047930 244 RSLCNRLKKEKRILVILDNIWE 265 (395)
Q Consensus 244 ~~l~~~l~~~kr~LlVlDdv~~ 265 (395)
..+|+.++++||+.-
T Consensus 97 -------~~~k~lv~fiDDlN~ 111 (272)
T PF12775_consen 97 -------PGGKKLVLFIDDLNM 111 (272)
T ss_dssp -------ESSSEEEEEEETTT-
T ss_pred -------CCCcEEEEEecccCC
Confidence 137899999999954
No 236
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=96.79 E-value=0.0077 Score=57.16 Aligned_cols=86 Identities=27% Similarity=0.325 Sum_probs=54.2
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCcccc--chhhhHHHHHHHHhc
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFADKLGLTLHEE--TESGRARSLCNRLKK 252 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~--~~~~~~~~l~~~l~~ 252 (395)
-.++.|.|.+|+|||||+.+++...... -..++|++.... ..++. .-+..++...+.. .....+..+.+.+..
T Consensus 82 GslvLI~G~pG~GKStLllq~a~~~a~~--g~~VlYvs~EEs--~~qi~-~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~ 156 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAARLAKR--GGKVLYVSGEES--PEQIK-LRADRLGISTENLYLLAETNLEDILASIEE 156 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhc--CCeEEEEECCcC--HHHHH-HHHHHcCCCcccEEEEccCcHHHHHHHHHh
Confidence 3588999999999999999998775532 245778776433 33332 2234555432221 111234566666655
Q ss_pred CCeEEEEEeCCCC
Q 047930 253 EKRILVILDNIWE 265 (395)
Q Consensus 253 ~kr~LlVlDdv~~ 265 (395)
.+.-+||+|.+..
T Consensus 157 ~~~~lVVIDSIq~ 169 (372)
T cd01121 157 LKPDLVIIDSIQT 169 (372)
T ss_pred cCCcEEEEcchHH
Confidence 5677999999843
No 237
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.79 E-value=0.0075 Score=52.96 Aligned_cols=43 Identities=21% Similarity=0.407 Sum_probs=32.2
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCC
Q 047930 174 DVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQD 218 (395)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~ 218 (395)
.-.++.|.|.+|+||||++.+++.....+ -..++|++....+.
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~~~~~--g~~v~yi~~e~~~~ 60 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVETAGQ--GKKVAYIDTEGLSS 60 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEECCCCCH
Confidence 35688899999999999999998776432 33577887655443
No 238
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.78 E-value=0.019 Score=54.12 Aligned_cols=99 Identities=22% Similarity=0.291 Sum_probs=56.1
Q ss_pred HHHHHHHHhcCC----CceEEEEEecCCCcHHH-HHHHHHHHhcccCCCCEEEEEEeCCc-CCHHHHHHHHHHHhCCCcc
Q 047930 162 TLNDILDALKNP----DVNMLGIYGMGGIGKTT-LAKEVARKAENEKLFDQVIFVEVSQI-QDIRKIQGEFADKLGLTLH 235 (395)
Q Consensus 162 ~~~~l~~~l~~~----~~~vi~I~G~~GiGKTt-La~~v~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~ 235 (395)
.+..+..++.++ +.++|.++|+.|+|||| ||+..+.-....+ -..+..++.... ....+-++..++-++.+..
T Consensus 186 ~l~~~~~~~~~~~~~~~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~-~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~ 264 (407)
T COG1419 186 KLRKLLLSLIENLIVEQKRVIALVGPTGVGKTTTLAKLAARYVMLKK-KKKVAIITTDTYRIGAVEQLKTYADIMGVPLE 264 (407)
T ss_pred HHHHHHHhhccccccccCcEEEEECCCCCcHHHHHHHHHHHHHhhcc-CcceEEEEeccchhhHHHHHHHHHHHhCCceE
Confidence 344455555544 47899999999999995 5554444331111 234666665432 2345566677777777655
Q ss_pred ccchhhhHHHHHHHHhcCCeEEEEEeCC
Q 047930 236 EETESGRARSLCNRLKKEKRILVILDNI 263 (395)
Q Consensus 236 ~~~~~~~~~~l~~~l~~~kr~LlVlDdv 263 (395)
.......+......+. +. =++.+|=+
T Consensus 265 vv~~~~el~~ai~~l~-~~-d~ILVDTa 290 (407)
T COG1419 265 VVYSPKELAEAIEALR-DC-DVILVDTA 290 (407)
T ss_pred EecCHHHHHHHHHHhh-cC-CEEEEeCC
Confidence 4434344444444444 22 45556655
No 239
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.77 E-value=0.0069 Score=51.61 Aligned_cols=44 Identities=18% Similarity=0.194 Sum_probs=30.9
Q ss_pred EEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHH
Q 047930 178 LGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGE 225 (395)
Q Consensus 178 i~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 225 (395)
+.|.|++|+|||+|+.++....... =..++|++... +..++.+.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~--g~~v~~~s~e~--~~~~~~~~ 45 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLAR--GEPGLYVTLEE--SPEELIEN 45 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHC--CCcEEEEECCC--CHHHHHHH
Confidence 6789999999999999987765422 23477887654 34555444
No 240
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.76 E-value=0.0033 Score=54.32 Aligned_cols=108 Identities=10% Similarity=0.117 Sum_probs=56.2
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHH---HHHHHhCCCccccchhhhHHHHHHHHhc
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQG---EFADKLGLTLHEETESGRARSLCNRLKK 252 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~---~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 252 (395)
++|.|+|+.|+||||++..+....... ....++. +..+. +.... .+..+-.. ..........+...+.
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~~--~~~~i~t-~e~~~--E~~~~~~~~~i~q~~v---g~~~~~~~~~i~~aLr- 72 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKN--KTHHILT-IEDPI--EFVHESKRSLINQREV---GLDTLSFENALKAALR- 72 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhhc--CCcEEEE-EcCCc--cccccCccceeeeccc---CCCccCHHHHHHHHhc-
Confidence 478999999999999999887765422 2333332 21111 10000 01100000 0011122334455555
Q ss_pred CCeEEEEEeCCCCccccchhccccCCCCCCcEEEEeecchhhh
Q 047930 253 EKRILVILDNIWENLDFQAVGIPHGDGHKGSKVLLTARSLDVL 295 (395)
Q Consensus 253 ~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iivTtR~~~va 295 (395)
..+=++++|++.+.+......... ..|..++.|+...++.
T Consensus 73 ~~pd~ii~gEird~e~~~~~l~~a---~~G~~v~~t~Ha~~~~ 112 (198)
T cd01131 73 QDPDVILVGEMRDLETIRLALTAA---ETGHLVMSTLHTNSAA 112 (198)
T ss_pred CCcCEEEEcCCCCHHHHHHHHHHH---HcCCEEEEEecCCcHH
Confidence 346699999998766544432221 2355577777766543
No 241
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.75 E-value=0.0037 Score=50.55 Aligned_cols=75 Identities=27% Similarity=0.321 Sum_probs=44.7
Q ss_pred EEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCccccchhhhHHHHHHHHhcCCeEE
Q 047930 178 LGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFADKLGLTLHEETESGRARSLCNRLKKEKRIL 257 (395)
Q Consensus 178 i~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~L 257 (395)
|.++|++|+|||+||+.++..... ...-+.++...+..+++...--.- ........ .+.+.+ .+..+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~~-----~~~~i~~~~~~~~~dl~g~~~~~~--~~~~~~~~----~l~~a~--~~~~i 68 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLGR-----PVIRINCSSDTTEEDLIGSYDPSN--GQFEFKDG----PLVRAM--RKGGI 68 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHTC-----EEEEEE-TTTSTHHHHHCEEET-T--TTTCEEE-----CCCTTH--HEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhhc-----ceEEEEeccccccccceeeeeecc--cccccccc----cccccc--cceeE
Confidence 579999999999999999987732 245567777777776554322110 00000011 111111 15899
Q ss_pred EEEeCCCC
Q 047930 258 VILDNIWE 265 (395)
Q Consensus 258 lVlDdv~~ 265 (395)
+|||++..
T Consensus 69 l~lDEin~ 76 (139)
T PF07728_consen 69 LVLDEINR 76 (139)
T ss_dssp EEESSCGG
T ss_pred EEECCccc
Confidence 99999974
No 242
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=96.74 E-value=0.019 Score=53.08 Aligned_cols=85 Identities=25% Similarity=0.328 Sum_probs=51.6
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCccc------cchhhhHHHHHH
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFADKLGLTLHE------ETESGRARSLCN 248 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~------~~~~~~~~~l~~ 248 (395)
-+++-|+|+.|+||||||..+....... -..++|+.....+++ ..++.++.+.+. ....+.+..+.+
T Consensus 53 G~ivEi~G~~ssGKttLaL~~ia~~q~~--g~~~a~ID~e~~ld~-----~~a~~lGvdl~rllv~~P~~~E~al~~~e~ 125 (322)
T PF00154_consen 53 GRIVEIYGPESSGKTTLALHAIAEAQKQ--GGICAFIDAEHALDP-----EYAESLGVDLDRLLVVQPDTGEQALWIAEQ 125 (322)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHT--T-EEEEEESSS---H-----HHHHHTT--GGGEEEEE-SSHHHHHHHHHH
T ss_pred CceEEEeCCCCCchhhhHHHHHHhhhcc--cceeEEecCcccchh-----hHHHhcCccccceEEecCCcHHHHHHHHHH
Confidence 4689999999999999999998775433 455899998877665 345566654332 122223333333
Q ss_pred HHhcCCeEEEEEeCCCCc
Q 047930 249 RLKKEKRILVILDNIWEN 266 (395)
Q Consensus 249 ~l~~~kr~LlVlDdv~~~ 266 (395)
.++.+.--++|+|.|-..
T Consensus 126 lirsg~~~lVVvDSv~al 143 (322)
T PF00154_consen 126 LIRSGAVDLVVVDSVAAL 143 (322)
T ss_dssp HHHTTSESEEEEE-CTT-
T ss_pred HhhcccccEEEEecCccc
Confidence 345455569999998654
No 243
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.74 E-value=0.013 Score=54.68 Aligned_cols=91 Identities=22% Similarity=0.314 Sum_probs=55.7
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhcccCC----CCEEEEEEeCCcCCHHHHHHHHHHHhCCCccc---------c-c-
Q 047930 174 DVNMLGIYGMGGIGKTTLAKEVARKAENEKL----FDQVIFVEVSQIQDIRKIQGEFADKLGLTLHE---------E-T- 238 (395)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~----f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~---------~-~- 238 (395)
...++-|+|++|+|||+++.+++-....... =..++|++....+++..+. ++++.++..... . +
T Consensus 101 ~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~-~~~~~~g~~~~~~l~~i~~~~~~~~ 179 (317)
T PRK04301 101 TQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIE-QMAEALGLDPDEVLDNIHVARAYNS 179 (317)
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHH-HHHHHcCCChHhhhccEEEEeCCCH
Confidence 3567889999999999999999866432211 1368999998888877654 444555432211 0 0
Q ss_pred --hhhhHHHHHHHHhc-CCeEEEEEeCCCC
Q 047930 239 --ESGRARSLCNRLKK-EKRILVILDNIWE 265 (395)
Q Consensus 239 --~~~~~~~l~~~l~~-~kr~LlVlDdv~~ 265 (395)
....+..+...+.. .+--|||+|.+-.
T Consensus 180 ~~~~~~~~~l~~~i~~~~~~~lvVIDSisa 209 (317)
T PRK04301 180 DHQMLLAEKAEELIKEGENIKLVIVDSLTA 209 (317)
T ss_pred HHHHHHHHHHHHHHhccCceeEEEEECchH
Confidence 01123334444433 3445899998743
No 244
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=96.73 E-value=0.047 Score=49.73 Aligned_cols=128 Identities=11% Similarity=0.040 Sum_probs=71.9
Q ss_pred HHHHHHHhcCCC-ceEEEEEecCCCcHHHHHHHHHHHhccc------------CCCCEEEEEEeCCc--CCHHHHHHHHH
Q 047930 163 LNDILDALKNPD-VNMLGIYGMGGIGKTTLAKEVARKAENE------------KLFDQVIFVEVSQI--QDIRKIQGEFA 227 (395)
Q Consensus 163 ~~~l~~~l~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~------------~~f~~~~wv~~s~~--~~~~~~~~~i~ 227 (395)
-++|...+..++ .....++|+.|+||+++|..+....-.. .|.|.......... ..+
T Consensus 6 ~~~L~~~i~~~rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~i-------- 77 (290)
T PRK05917 6 WEALIQRVRDQKVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSI-------- 77 (290)
T ss_pred HHHHHHHHHcCCcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcH--------
Confidence 345666666555 4556699999999999999988765331 13332211111100 111
Q ss_pred HHhCCCccccchhhhHHHHHHHHh----cCCeEEEEEeCCCCc--cccchhccccCCCCCCcEEEEeecc-hhhhhhcCC
Q 047930 228 DKLGLTLHEETESGRARSLCNRLK----KEKRILVILDNIWEN--LDFQAVGIPHGDGHKGSKVLLTARS-LDVLSRKMD 300 (395)
Q Consensus 228 ~~l~~~~~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR~-~~va~~~~~ 300 (395)
+.+..+.+.+. .++.-++|+|+++.. ..+..+...+-...+++.+|++|.+ ..+.....+
T Consensus 78 -------------dqiR~l~~~~~~~p~e~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~TI~S 144 (290)
T PRK05917 78 -------------ETPRAIKKQIWIHPYESPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPTIRS 144 (290)
T ss_pred -------------HHHHHHHHHHhhCccCCCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCcHHHHh
Confidence 12223333332 255568899999754 4566666555444456666666665 445444445
Q ss_pred CcceeecCCCC
Q 047930 301 SQQNFSFDVLK 311 (395)
Q Consensus 301 ~~~~~~l~~L~ 311 (395)
.+..+.+.++.
T Consensus 145 Rcq~~~~~~~~ 155 (290)
T PRK05917 145 RSLSIHIPMEE 155 (290)
T ss_pred cceEEEccchh
Confidence 56677777653
No 245
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.73 E-value=0.022 Score=53.01 Aligned_cols=26 Identities=38% Similarity=0.415 Sum_probs=23.3
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhcc
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARKAEN 201 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~ 201 (395)
+-+..+|++|+|||-||+.|+.....
T Consensus 246 kgvLm~GPPGTGKTlLAKAvATEc~t 271 (491)
T KOG0738|consen 246 KGVLMVGPPGTGKTLLAKAVATECGT 271 (491)
T ss_pred ceeeeeCCCCCcHHHHHHHHHHhhcC
Confidence 56789999999999999999998764
No 246
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.72 E-value=0.0093 Score=54.99 Aligned_cols=41 Identities=29% Similarity=0.403 Sum_probs=33.1
Q ss_pred hchHHHHHHHHHHhcCCCceEEEEEecCCCcHHHHHHHHHH
Q 047930 157 ESRMSTLNDILDALKNPDVNMLGIYGMGGIGKTTLAKEVAR 197 (395)
Q Consensus 157 ~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~ 197 (395)
-+|..+-.--++.|.++....+.+.|.+|+|||-||-...-
T Consensus 227 ~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgl 267 (436)
T COG1875 227 RPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGL 267 (436)
T ss_pred CcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHH
Confidence 34555556667888899999999999999999998877653
No 247
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.71 E-value=0.0015 Score=51.79 Aligned_cols=22 Identities=55% Similarity=0.859 Sum_probs=20.3
Q ss_pred EEEEecCCCcHHHHHHHHHHHh
Q 047930 178 LGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 178 i~I~G~~GiGKTtLa~~v~~~~ 199 (395)
|.|.|..|+||||+|+.+.+..
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999874
No 248
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.70 E-value=0.0075 Score=57.53 Aligned_cols=85 Identities=18% Similarity=0.181 Sum_probs=44.6
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCC-cCCHHHHHHHHHHHhCCCccccchhhhHHHHHHHHhc
Q 047930 174 DVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQ-IQDIRKIQGEFADKLGLTLHEETESGRARSLCNRLKK 252 (395)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 252 (395)
...++.++|++|+||||++.+++........+ .+..++... .......+...++.++.+.... .....+.+.+..
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~-~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~---~~~~~l~~~l~~ 297 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGK-SVSLYTTDNYRIAAIEQLKRYADTMGMPFYPV---KDIKKFKETLAR 297 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCC-eEEEecccchhhhHHHHHHHHHHhcCCCeeeh---HHHHHHHHHHHh
Confidence 35689999999999999999998754221112 233333321 1122334444455555433211 112344444432
Q ss_pred CCeEEEEEeC
Q 047930 253 EKRILVILDN 262 (395)
Q Consensus 253 ~kr~LlVlDd 262 (395)
...=++++|-
T Consensus 298 ~~~D~VLIDT 307 (432)
T PRK12724 298 DGSELILIDT 307 (432)
T ss_pred CCCCEEEEeC
Confidence 2334577883
No 249
>PTZ00301 uridine kinase; Provisional
Probab=96.70 E-value=0.0044 Score=53.95 Aligned_cols=25 Identities=28% Similarity=0.622 Sum_probs=22.3
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHh
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
..+|+|.|.+|+||||||+.+.+..
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l 27 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSEL 27 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHH
Confidence 4689999999999999999988765
No 250
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.69 E-value=0.012 Score=55.64 Aligned_cols=88 Identities=17% Similarity=0.295 Sum_probs=46.9
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCc-CCHHHHHHHHHHHhCCCccccchhhhHHHHHHHHhc
Q 047930 174 DVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQI-QDIRKIQGEFADKLGLTLHEETESGRARSLCNRLKK 252 (395)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 252 (395)
+.++|+++|++|+||||++..++.....+. + .+..++.... ....+-+...++.++.+.....+...+....+.+..
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~G-k-kVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~ 317 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKK-K-TVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKE 317 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcC-C-cEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHh
Confidence 457999999999999999999987654321 2 2444544321 122333444444555443222222222333333332
Q ss_pred C-CeEEEEEeCC
Q 047930 253 E-KRILVILDNI 263 (395)
Q Consensus 253 ~-kr~LlVlDdv 263 (395)
. +.=++++|-.
T Consensus 318 ~~~~DvVLIDTa 329 (436)
T PRK11889 318 EARVDYILIDTA 329 (436)
T ss_pred ccCCCEEEEeCc
Confidence 1 2236677766
No 251
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.68 E-value=0.0023 Score=63.02 Aligned_cols=47 Identities=23% Similarity=0.355 Sum_probs=40.1
Q ss_pred cchhchHHHHHHHHHHhc------CCCceEEEEEecCCCcHHHHHHHHHHHhc
Q 047930 154 EAFESRMSTLNDILDALK------NPDVNMLGIYGMGGIGKTTLAKEVARKAE 200 (395)
Q Consensus 154 ~~~~gr~~~~~~l~~~l~------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (395)
.+++|.++.++++++.|. +...+++.++|+.|+||||||+.+.+-..
T Consensus 76 ~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le 128 (644)
T PRK15455 76 EEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLME 128 (644)
T ss_pred hcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHH
Confidence 357899999999998882 55678999999999999999999998654
No 252
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.68 E-value=0.016 Score=54.55 Aligned_cols=89 Identities=17% Similarity=0.249 Sum_probs=53.6
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcC-CHHHHHHHHHHHhCCCccccchhhhHHHHHHHHhc
Q 047930 174 DVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQ-DIRKIQGEFADKLGLTLHEETESGRARSLCNRLKK 252 (395)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 252 (395)
+.+++.++|+.|+||||++..++.....+. ..+.+++..... ...+-++...+.++.+.....+...+....+.+..
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g--~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~ 282 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQN--RTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTY 282 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC--CeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHh
Confidence 467899999999999999999987654332 346666664322 23555666677666543322222233333344431
Q ss_pred -CCeEEEEEeCCC
Q 047930 253 -EKRILVILDNIW 264 (395)
Q Consensus 253 -~kr~LlVlDdv~ 264 (395)
+..=++++|-.-
T Consensus 283 ~~~~D~VLIDTAG 295 (407)
T PRK12726 283 VNCVDHILIDTVG 295 (407)
T ss_pred cCCCCEEEEECCC
Confidence 234577888774
No 253
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=96.67 E-value=0.036 Score=57.45 Aligned_cols=60 Identities=13% Similarity=0.245 Sum_probs=39.6
Q ss_pred cchhchHHHHHHHHHHhc--CCCceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCC
Q 047930 154 EAFESRMSTLNDILDALK--NPDVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQ 215 (395)
Q Consensus 154 ~~~~gr~~~~~~l~~~l~--~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~ 215 (395)
..++|+...+..+.+.+. ......|.|+|..|+|||++|+.+++..... -...+.+++..
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~--~~~~v~i~c~~ 437 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRN--NRRMVKMNCAA 437 (686)
T ss_pred cceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhcCCC--CCCeEEEeccc
Confidence 357787777776655443 2233457799999999999999999865322 12345555544
No 254
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.66 E-value=0.01 Score=55.12 Aligned_cols=91 Identities=14% Similarity=0.181 Sum_probs=54.5
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhccc---C-CCCEEEEEEeCCcCCHHHHHHHHHHHhCCCccc----------cch
Q 047930 174 DVNMLGIYGMGGIGKTTLAKEVARKAENE---K-LFDQVIFVEVSQIQDIRKIQGEFADKLGLTLHE----------ETE 239 (395)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~---~-~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~----------~~~ 239 (395)
.-.++.|+|.+|+|||+|+.+++...... . .-..++|++....++... +.++++.++..... .+.
T Consensus 95 ~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~R-l~~ia~~~~~~~~~~l~~i~~~~~~~~ 173 (316)
T TIGR02239 95 TGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPER-LLAIAERYGLNPEDVLDNVAYARAYNT 173 (316)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHH-HHHHHHHcCCChHHhhccEEEEecCCh
Confidence 35788899999999999999987643211 1 113579999888777776 44455555443211 000
Q ss_pred h---hhHHHHHHHHhcCCeEEEEEeCCCC
Q 047930 240 S---GRARSLCNRLKKEKRILVILDNIWE 265 (395)
Q Consensus 240 ~---~~~~~l~~~l~~~kr~LlVlDdv~~ 265 (395)
. ..+..+...+...+--|||+|.+-.
T Consensus 174 ~~~~~~l~~~~~~~~~~~~~LvVIDSI~a 202 (316)
T TIGR02239 174 DHQLQLLQQAAAMMSESRFALLIVDSATA 202 (316)
T ss_pred HHHHHHHHHHHHhhccCCccEEEEECcHH
Confidence 1 1122233333334566899998843
No 255
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=96.66 E-value=0.002 Score=55.50 Aligned_cols=25 Identities=48% Similarity=0.694 Sum_probs=22.9
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhcc
Q 047930 177 MLGIYGMGGIGKTTLAKEVARKAEN 201 (395)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~~~ 201 (395)
||+|.|++|+||||+|+.+......
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~ 25 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNK 25 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCc
Confidence 6999999999999999999988764
No 256
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.66 E-value=0.0052 Score=52.28 Aligned_cols=23 Identities=22% Similarity=0.300 Sum_probs=20.8
Q ss_pred EEEEEecCCCcHHHHHHHHHHHh
Q 047930 177 MLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
+|.|+|++|+||||+|+.+....
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 57899999999999999998765
No 257
>PRK05439 pantothenate kinase; Provisional
Probab=96.65 E-value=0.017 Score=53.19 Aligned_cols=28 Identities=25% Similarity=0.281 Sum_probs=24.2
Q ss_pred CCceEEEEEecCCCcHHHHHHHHHHHhc
Q 047930 173 PDVNMLGIYGMGGIGKTTLAKEVARKAE 200 (395)
Q Consensus 173 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (395)
+.+-+|+|.|.+|+||||+|+.+.....
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l~ 111 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALLS 111 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4578999999999999999999887543
No 258
>PTZ00035 Rad51 protein; Provisional
Probab=96.65 E-value=0.017 Score=54.25 Aligned_cols=90 Identities=14% Similarity=0.222 Sum_probs=54.3
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhcc---cC-CCCEEEEEEeCCcCCHHHHHHHHHHHhCCCccc----------cch-
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARKAEN---EK-LFDQVIFVEVSQIQDIRKIQGEFADKLGLTLHE----------ETE- 239 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~---~~-~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~----------~~~- 239 (395)
-.++.|+|..|+|||||+.+++-.... .. .-..++|++....++++. +.++++.++..... .+.
T Consensus 118 G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~er-i~~ia~~~g~~~~~~l~nI~~~~~~~~e 196 (337)
T PTZ00035 118 GSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPER-IVQIAERFGLDPEDVLDNIAYARAYNHE 196 (337)
T ss_pred CeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHH-HHHHHHHhCCChHhHhhceEEEccCCHH
Confidence 468889999999999999988755431 01 123477999888777766 44455555443210 000
Q ss_pred --hhhHHHHHHHHhcCCeEEEEEeCCCC
Q 047930 240 --SGRARSLCNRLKKEKRILVILDNIWE 265 (395)
Q Consensus 240 --~~~~~~l~~~l~~~kr~LlVlDdv~~ 265 (395)
...+..+...+...+--|||+|.+..
T Consensus 197 ~~~~~l~~~~~~l~~~~~~lvVIDSita 224 (337)
T PTZ00035 197 HQMQLLSQAAAKMAEERFALLIVDSATA 224 (337)
T ss_pred HHHHHHHHHHHHhhccCccEEEEECcHH
Confidence 11222233333334556999999854
No 259
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.64 E-value=0.0028 Score=55.44 Aligned_cols=24 Identities=29% Similarity=0.319 Sum_probs=21.2
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHH
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARK 198 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~ 198 (395)
.+++.|+|+.|.||||+.+.+...
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~ 52 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALI 52 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHH
Confidence 478899999999999999998743
No 260
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.64 E-value=0.0038 Score=52.79 Aligned_cols=24 Identities=46% Similarity=0.581 Sum_probs=21.5
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhc
Q 047930 177 MLGIYGMGGIGKTTLAKEVARKAE 200 (395)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~~ 200 (395)
.|.|.|++|+||||+|+.+.+...
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~ 25 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLG 25 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999999854
No 261
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.62 E-value=0.022 Score=56.64 Aligned_cols=202 Identities=21% Similarity=0.241 Sum_probs=101.6
Q ss_pred cchhchH---HHHHHHHHHhcCCC---------ceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHH
Q 047930 154 EAFESRM---STLNDILDALKNPD---------VNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRK 221 (395)
Q Consensus 154 ~~~~gr~---~~~~~l~~~l~~~~---------~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~ 221 (395)
.+.-|.+ +++.++++.|.++. ++-+.++|++|+|||.||+.+..+..+. | .+.|.+.-
T Consensus 150 ~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VP--F-----f~iSGS~F--- 219 (596)
T COG0465 150 ADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVP--F-----FSISGSDF--- 219 (596)
T ss_pred hhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCC--c-----eeccchhh---
Confidence 3344554 45566777777543 5668899999999999999999988765 3 22222110
Q ss_pred HHHHHHHHhCCCccccchhhhHHHHHHHHhcCCeEEEEEeCCCCc------------cccchhcccc---CCCC---CCc
Q 047930 222 IQGEFADKLGLTLHEETESGRARSLCNRLKKEKRILVILDNIWEN------------LDFQAVGIPH---GDGH---KGS 283 (395)
Q Consensus 222 ~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~------------~~~~~l~~~l---~~~~---~gs 283 (395)
++.+- .-.......+...-++.-++++++|.++.. +.++.....+ .++. .|-
T Consensus 220 -----VemfV-----GvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gv 289 (596)
T COG0465 220 -----VEMFV-----GVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGV 289 (596)
T ss_pred -----hhhhc-----CCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCce
Confidence 11000 001123444444444456899999988643 1122211111 1222 233
Q ss_pred EEEEeecchhhh-h---hcCCCcceeecCCCChHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHHH--HHH--HH
Q 047930 284 KVLLTARSLDVL-S---RKMDSQQNFSFDVLKEDEAWSLFKKMAGDYIEGSEFKWVAREVAKECAGLPVSI--VTV--AR 355 (395)
Q Consensus 284 ~iivTtR~~~va-~---~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai--~~i--~~ 355 (395)
.||..|.-.+|. . +.......+.++.-+-..-.++++-++......++.. ...|++.+-|.-.|- +.+ |.
T Consensus 290 iviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vd--l~~iAr~tpGfsGAdL~nl~NEAa 367 (596)
T COG0465 290 IVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVD--LKKIARGTPGFSGADLANLLNEAA 367 (596)
T ss_pred EEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCC--HHHHhhhCCCcccchHhhhHHHHH
Confidence 333333333343 1 1112234555555554566666665553322222211 223888888775442 222 44
Q ss_pred Hhh---CC---CHHHHHHHHHHhcCCCC
Q 047930 356 ALR---NK---RLFEWKDALEQLRRPSS 377 (395)
Q Consensus 356 ~l~---~~---~~~~w~~~l~~l~~~~~ 377 (395)
++. ++ +..+.....+++-....
T Consensus 368 l~aar~n~~~i~~~~i~ea~drv~~G~e 395 (596)
T COG0465 368 LLAARRNKKEITMRDIEEAIDRVIAGPE 395 (596)
T ss_pred HHHHHhcCeeEeccchHHHHHHHhcCcC
Confidence 443 22 55667777777655443
No 262
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.62 E-value=0.0021 Score=52.19 Aligned_cols=24 Identities=38% Similarity=0.587 Sum_probs=21.0
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhc
Q 047930 177 MLGIYGMGGIGKTTLAKEVARKAE 200 (395)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~~ 200 (395)
+|.++|++|+||||+|+.+.....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC
Confidence 578999999999999999986643
No 263
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=96.62 E-value=0.013 Score=61.24 Aligned_cols=181 Identities=22% Similarity=0.238 Sum_probs=90.6
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhc--ccC------------CCCEEEEEEeCCcCCHHHHHHHHHHHhCCCccccch
Q 047930 174 DVNMLGIYGMGGIGKTTLAKEVARKAE--NEK------------LFDQVIFVEVSQIQDIRKIQGEFADKLGLTLHEETE 239 (395)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~--~~~------------~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~ 239 (395)
+.+++.|.|+.+.||||+.+.+.-..- ... .|+ .++..++...++..-+..+.. .
T Consensus 326 ~~~~~iITGpN~gGKTt~lktigl~~~maq~G~~vpa~~~~~i~~~~-~i~~~ig~~~si~~~lStfS~----------~ 394 (782)
T PRK00409 326 DKTVLVITGPNTGGKTVTLKTLGLAALMAKSGLPIPANEPSEIPVFK-EIFADIGDEQSIEQSLSTFSG----------H 394 (782)
T ss_pred CceEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCcccCCCccccccc-eEEEecCCccchhhchhHHHH----------H
Confidence 456789999999999999998864411 001 112 223333332222211111111 0
Q ss_pred hhhHHHHHHHHhcCCeEEEEEeCCCCcccc---chh----ccccCCCCCCcEEEEeecchhhhhhcCCCcceeecCCCCh
Q 047930 240 SGRARSLCNRLKKEKRILVILDNIWENLDF---QAV----GIPHGDGHKGSKVLLTARSLDVLSRKMDSQQNFSFDVLKE 312 (395)
Q Consensus 240 ~~~~~~l~~~l~~~kr~LlVlDdv~~~~~~---~~l----~~~l~~~~~gs~iivTtR~~~va~~~~~~~~~~~l~~L~~ 312 (395)
......+...+ ..+-|++||+.-...+. ..+ ...+ ...|+.+|+||....+.........+......-+
T Consensus 395 m~~~~~Il~~~--~~~sLvLlDE~~~GtDp~eg~ala~aile~l--~~~~~~vIitTH~~el~~~~~~~~~v~~~~~~~d 470 (782)
T PRK00409 395 MTNIVRILEKA--DKNSLVLFDELGAGTDPDEGAALAISILEYL--RKRGAKIIATTHYKELKALMYNREGVENASVEFD 470 (782)
T ss_pred HHHHHHHHHhC--CcCcEEEecCCCCCCCHHHHHHHHHHHHHHH--HHCCCEEEEECChHHHHHHHhcCCCeEEEEEEEe
Confidence 01112222222 36789999998644221 122 2222 1247889999998766532222111111111111
Q ss_pred HHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHHHHHHHHHhhCCCHHHHHHHHHHhcC
Q 047930 313 DEAWSLFKKMAGDYIEGSEFKWVAREVAKECAGLPVSIVTVARALRNKRLFEWKDALEQLRR 374 (395)
Q Consensus 313 ~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~i~~~l~~~~~~~w~~~l~~l~~ 374 (395)
.+......+...+. +. ...|-+|++++ |+|-.+..-|.-+......+.+.++..|..
T Consensus 471 ~~~l~~~Ykl~~G~-~g---~S~a~~iA~~~-Glp~~ii~~A~~~~~~~~~~~~~li~~l~~ 527 (782)
T PRK00409 471 EETLRPTYRLLIGI-PG---KSNAFEIAKRL-GLPENIIEEAKKLIGEDKEKLNELIASLEE 527 (782)
T ss_pred cCcCcEEEEEeeCC-CC---CcHHHHHHHHh-CcCHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 11111111111111 11 22467788877 899999988888876555677777776543
No 264
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.61 E-value=0.016 Score=51.54 Aligned_cols=86 Identities=13% Similarity=0.217 Sum_probs=53.4
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCccc-----------------
Q 047930 174 DVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFADKLGLTLHE----------------- 236 (395)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~----------------- 236 (395)
.-.++.|.|.+|+|||+++.++....-.+ =..++|++.... +.++.+.+ .+++....+
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~~~--g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~~ 98 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGALKQ--GKKVYVITTENT--SKSYLKQM-ESVKIDISDFFLWGYLRIFPLNTEGF 98 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHHhC--CCEEEEEEcCCC--HHHHHHHH-HHCCCChhHHHhCCCceEEecccccc
Confidence 35688999999999999999996553222 345788888653 45555554 333322110
Q ss_pred ----cchhhhHHHHHHHHhcCCeEEEEEeCCC
Q 047930 237 ----ETESGRARSLCNRLKKEKRILVILDNIW 264 (395)
Q Consensus 237 ----~~~~~~~~~l~~~l~~~kr~LlVlDdv~ 264 (395)
......+..+.+.+.+.+.-++|+|.+.
T Consensus 99 ~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 99 EWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred ccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 1112344555555554456689999975
No 265
>PRK13531 regulatory ATPase RavA; Provisional
Probab=96.61 E-value=0.0039 Score=60.45 Aligned_cols=50 Identities=20% Similarity=0.258 Sum_probs=39.6
Q ss_pred chhchHHHHHHHHHHhcCCCceEEEEEecCCCcHHHHHHHHHHHhcccCCCC
Q 047930 155 AFESRMSTLNDILDALKNPDVNMLGIYGMGGIGKTTLAKEVARKAENEKLFD 206 (395)
Q Consensus 155 ~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~ 206 (395)
.++||++.++.+...+..++ .+.|.|++|+|||+||+.+.........|.
T Consensus 21 ~i~gre~vI~lll~aalag~--hVLL~GpPGTGKT~LAraLa~~~~~~~~F~ 70 (498)
T PRK13531 21 GLYERSHAIRLCLLAALSGE--SVFLLGPPGIAKSLIARRLKFAFQNARAFE 70 (498)
T ss_pred hccCcHHHHHHHHHHHccCC--CEEEECCCChhHHHHHHHHHHHhcccCcce
Confidence 47899999999888877554 378999999999999999998754333343
No 266
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=96.60 E-value=0.011 Score=51.65 Aligned_cols=85 Identities=24% Similarity=0.490 Sum_probs=52.5
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCc-CCHHHHHHHHHHHhCCC-------ccccchhh------
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQI-QDIRKIQGEFADKLGLT-------LHEETESG------ 241 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~-------~~~~~~~~------ 241 (395)
.-+.|.|..|+|||+|+..+.+... -+.++++.+.+. ....++.+++...-... ....+...
T Consensus 16 qr~~I~g~~g~GKt~Ll~~i~~~~~----~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~~~ 91 (215)
T PF00006_consen 16 QRIGIFGGAGVGKTVLLQEIANNQD----ADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRAPY 91 (215)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHCT----TTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHHHH
T ss_pred CEEEEEcCcccccchhhHHHHhccc----ccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhhhc
Confidence 3588999999999999999998874 345588888754 44566666664431111 00111000
Q ss_pred hHHHHHHHHh-cCCeEEEEEeCCC
Q 047930 242 RARSLCNRLK-KEKRILVILDNIW 264 (395)
Q Consensus 242 ~~~~l~~~l~-~~kr~LlVlDdv~ 264 (395)
..-.+.+++. ++++.|+++||+.
T Consensus 92 ~a~t~AEyfrd~G~dVlli~Dslt 115 (215)
T PF00006_consen 92 TALTIAEYFRDQGKDVLLIIDSLT 115 (215)
T ss_dssp HHHHHHHHHHHTTSEEEEEEETHH
T ss_pred cchhhhHHHhhcCCceeehhhhhH
Confidence 1112333332 4899999999984
No 267
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=96.59 E-value=0.012 Score=55.13 Aligned_cols=90 Identities=14% Similarity=0.199 Sum_probs=55.7
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhccc---C-CCCEEEEEEeCCcCCHHHHHHHHHHHhCCCcccc---------chhh
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARKAENE---K-LFDQVIFVEVSQIQDIRKIQGEFADKLGLTLHEE---------TESG 241 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~---~-~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~---------~~~~ 241 (395)
-.++-|+|.+|+|||+|+..++-..... . .-..++|++....++++.+ .+|++.++...... .+.+
T Consensus 123 g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl-~qia~~~~~~~~~~l~~i~~~~~~~~e 201 (342)
T PLN03186 123 GSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRL-IQIAERFGLNGADVLENVAYARAYNTD 201 (342)
T ss_pred ceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHH-HHHHHHcCCChhhhccceEEEecCCHH
Confidence 4678899999999999999887543211 1 1136899999999888775 45666665432110 0111
Q ss_pred ----hHHHHHHHHhcCCeEEEEEeCCCC
Q 047930 242 ----RARSLCNRLKKEKRILVILDNIWE 265 (395)
Q Consensus 242 ----~~~~l~~~l~~~kr~LlVlDdv~~ 265 (395)
.+..+...+...+--|||+|.+-.
T Consensus 202 ~~~~ll~~~~~~~~~~~~~LIVIDSI~a 229 (342)
T PLN03186 202 HQSELLLEAASMMAETRFALMIVDSATA 229 (342)
T ss_pred HHHHHHHHHHHHhhccCCCEEEEeCcHH
Confidence 122222223334566899999843
No 268
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=96.59 E-value=0.023 Score=57.09 Aligned_cols=49 Identities=14% Similarity=0.270 Sum_probs=36.7
Q ss_pred cccchhchHHHHHHHHHHhc--CCCceEEEEEecCCCcHHHHHHHHHHHhc
Q 047930 152 DYEAFESRMSTLNDILDALK--NPDVNMLGIYGMGGIGKTTLAKEVARKAE 200 (395)
Q Consensus 152 ~~~~~~gr~~~~~~l~~~l~--~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (395)
....++|....+.++.+.+. ......|.|+|..|+|||++|+.+++...
T Consensus 194 ~~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s~ 244 (534)
T TIGR01817 194 KEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLSP 244 (534)
T ss_pred ccCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhCC
Confidence 34567888887777776654 22334567999999999999999998754
No 269
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.58 E-value=0.0024 Score=55.75 Aligned_cols=27 Identities=33% Similarity=0.465 Sum_probs=24.2
Q ss_pred CCceEEEEEecCCCcHHHHHHHHHHHh
Q 047930 173 PDVNMLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 173 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
.+..+|+|.|.+|+|||||++.++...
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 356799999999999999999999875
No 270
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.58 E-value=0.0031 Score=51.27 Aligned_cols=29 Identities=34% Similarity=0.421 Sum_probs=24.7
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhcccC
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARKAENEK 203 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~ 203 (395)
..-|.|.|++|+||||+++.+.+..+...
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~g 33 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREKG 33 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhcC
Confidence 34688999999999999999998877643
No 271
>PRK08233 hypothetical protein; Provisional
Probab=96.57 E-value=0.0022 Score=54.46 Aligned_cols=26 Identities=31% Similarity=0.496 Sum_probs=23.1
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhc
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARKAE 200 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (395)
..+|+|.|.+|+||||||..+.....
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 46899999999999999999998754
No 272
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.56 E-value=0.014 Score=56.47 Aligned_cols=58 Identities=24% Similarity=0.347 Sum_probs=38.2
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCc-CCHHHHHHHHHHHhCCC
Q 047930 174 DVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQI-QDIRKIQGEFADKLGLT 233 (395)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~ 233 (395)
.+.+|.++|..|+||||++..++.....+. + .+..+++... +...+.+..++..++.+
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g-~-kV~lV~~D~~R~aa~eQL~~la~~~gvp 152 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKG-L-KVGLVAADTYRPAAYDQLKQLAEKIGVP 152 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcC-C-eEEEecCCCCCHHHHHHHHHHHHHcCCc
Confidence 467999999999999999999988765432 2 3444444321 12345566666666544
No 273
>PRK04328 hypothetical protein; Provisional
Probab=96.56 E-value=0.014 Score=52.40 Aligned_cols=41 Identities=15% Similarity=0.250 Sum_probs=30.7
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCc
Q 047930 174 DVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQI 216 (395)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~ 216 (395)
.-.++.|.|.+|+|||+|+.++....-.+ -..++|++....
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~~--ge~~lyis~ee~ 62 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQM--GEPGVYVALEEH 62 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhc--CCcEEEEEeeCC
Confidence 35688899999999999999987664322 345788887653
No 274
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=96.56 E-value=0.028 Score=56.07 Aligned_cols=61 Identities=10% Similarity=0.253 Sum_probs=41.5
Q ss_pred cchhchHHHHHHHHHHhc--CCCceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCc
Q 047930 154 EAFESRMSTLNDILDALK--NPDVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQI 216 (395)
Q Consensus 154 ~~~~gr~~~~~~l~~~l~--~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~ 216 (395)
..++|+...+.++.+.+. ......|.|+|..|+|||++|+.++...... -...+.++++..
T Consensus 187 ~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~--~~p~v~v~c~~~ 249 (509)
T PRK05022 187 GEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASPRA--DKPLVYLNCAAL 249 (509)
T ss_pred CceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCCcC--CCCeEEEEcccC
Confidence 457787777777666654 2333457799999999999999999875422 123455666543
No 275
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.55 E-value=0.014 Score=48.92 Aligned_cols=80 Identities=18% Similarity=0.188 Sum_probs=46.6
Q ss_pred EEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCccccchhhhHHHHHHHHhcC-CeE
Q 047930 178 LGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFADKLGLTLHEETESGRARSLCNRLKKE-KRI 256 (395)
Q Consensus 178 i~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~-kr~ 256 (395)
+.|.|..|+|||++|.++.... ...++|+.....++. ++.+.|...-..........+....+.+.+... +.-
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~-----~~~~~y~at~~~~d~-em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~~~~ 75 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAEL-----GGPVTYIATAEAFDD-EMAERIARHRKRRPAHWRTIETPRDLVSALKELDPGD 75 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhc-----CCCeEEEEccCcCCH-HHHHHHHHHHHhCCCCceEeecHHHHHHHHHhcCCCC
Confidence 6789999999999999998652 234677766666654 344444332222222222223333455555321 233
Q ss_pred EEEEeCC
Q 047930 257 LVILDNI 263 (395)
Q Consensus 257 LlVlDdv 263 (395)
.+++|.+
T Consensus 76 ~VLIDcl 82 (169)
T cd00544 76 VVLIDCL 82 (169)
T ss_pred EEEEEcH
Confidence 7999987
No 276
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.55 E-value=0.0023 Score=44.88 Aligned_cols=23 Identities=39% Similarity=0.631 Sum_probs=20.8
Q ss_pred EEEEEecCCCcHHHHHHHHHHHh
Q 047930 177 MLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
+|.|.|..|+||||+++.+.+..
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999874
No 277
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=96.52 E-value=0.014 Score=50.05 Aligned_cols=50 Identities=26% Similarity=0.385 Sum_probs=32.1
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhcccCCC--------CEEEEEEeCCcCCHHHHHHHHH
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARKAENEKLF--------DQVIFVEVSQIQDIRKIQGEFA 227 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f--------~~~~wv~~s~~~~~~~~~~~i~ 227 (395)
.+..|.|++|+||||++.++.........| ..++|++...+ ..++.+.+.
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~--~~~~~~rl~ 90 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS--ESQIARRLR 90 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS---HHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC--HHHHHHHHH
Confidence 468899999999999999998775532222 25788877655 334444443
No 278
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.49 E-value=0.013 Score=56.81 Aligned_cols=87 Identities=14% Similarity=0.212 Sum_probs=46.5
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcC-CHHHHHHHHHHHhCCCccccchhhhHHHHHHHHhcC
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQ-DIRKIQGEFADKLGLTLHEETESGRARSLCNRLKKE 253 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 253 (395)
.+++.++|++|+||||++..++........-..+..++..... ...+-+....+.++.+.........+......+.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~-- 298 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLR-- 298 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhC--
Confidence 3589999999999999999887665411112346666653321 1223344444445544322222222222223332
Q ss_pred CeEEEEEeCC
Q 047930 254 KRILVILDNI 263 (395)
Q Consensus 254 kr~LlVlDdv 263 (395)
..=++++|..
T Consensus 299 ~~DlVlIDt~ 308 (424)
T PRK05703 299 DCDVILIDTA 308 (424)
T ss_pred CCCEEEEeCC
Confidence 3457888866
No 279
>PRK06762 hypothetical protein; Provisional
Probab=96.48 E-value=0.0027 Score=53.12 Aligned_cols=25 Identities=36% Similarity=0.558 Sum_probs=22.5
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHh
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
+.+|.|+|+.|+||||+|+.+.+..
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999999875
No 280
>PRK06217 hypothetical protein; Validated
Probab=96.48 E-value=0.016 Score=49.37 Aligned_cols=25 Identities=32% Similarity=0.464 Sum_probs=22.2
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhcc
Q 047930 177 MLGIYGMGGIGKTTLAKEVARKAEN 201 (395)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~~~ 201 (395)
.|.|.|.+|+||||+++.+......
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~ 27 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDI 27 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCC
Confidence 4889999999999999999987643
No 281
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.47 E-value=0.014 Score=48.18 Aligned_cols=115 Identities=23% Similarity=0.183 Sum_probs=61.1
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEE---eCCcCCHHHHHHHHHHHh-----CCC--cc-ccchh----
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVE---VSQIQDIRKIQGEFADKL-----GLT--LH-EETES---- 240 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~---~s~~~~~~~~~~~i~~~l-----~~~--~~-~~~~~---- 240 (395)
..|-|++..|.||||+|....-....+. + .+.++. -........+++.+ ..+ +.. .. .....
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~~~g-~-~v~~vQFlKg~~~~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~~ 79 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRALGHG-Y-RVGVVQFLKGGWKYGELKALERL-PNIEIHRMGRGFFWTTENDEEDIAA 79 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCC-C-eEEEEEEeCCCCccCHHHHHHhC-CCcEEEECCCCCccCCCChHHHHHH
Confidence 4677888889999999998887755432 2 233332 22233444444443 011 100 00 00111
Q ss_pred --hhHHHHHHHHhcCCeEEEEEeCCCCc-----cccchhccccCCCCCCcEEEEeecchh
Q 047930 241 --GRARSLCNRLKKEKRILVILDNIWEN-----LDFQAVGIPHGDGHKGSKVLLTARSLD 293 (395)
Q Consensus 241 --~~~~~l~~~l~~~kr~LlVlDdv~~~-----~~~~~l~~~l~~~~~gs~iivTtR~~~ 293 (395)
.......+.+..+.-=|||||++-.. ...+.+...+....++.-+|+|.|+..
T Consensus 80 a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 80 AAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 11223334444344459999998543 233344444444455678999999843
No 282
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.46 E-value=0.016 Score=48.86 Aligned_cols=25 Identities=32% Similarity=0.497 Sum_probs=21.9
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhcc
Q 047930 177 MLGIYGMGGIGKTTLAKEVARKAEN 201 (395)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~~~ 201 (395)
++.++|++|+||||++..+......
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~ 26 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKK 26 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6789999999999999999887653
No 283
>CHL00206 ycf2 Ycf2; Provisional
Probab=96.46 E-value=0.041 Score=61.22 Aligned_cols=27 Identities=22% Similarity=0.222 Sum_probs=23.9
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhcc
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARKAEN 201 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~ 201 (395)
++-|.++|++|+|||.||+.++.+..+
T Consensus 1630 PKGILLiGPPGTGKTlLAKALA~es~V 1656 (2281)
T CHL00206 1630 SRGILVIGSIGTGRSYLVKYLATNSYV 1656 (2281)
T ss_pred CCceEEECCCCCCHHHHHHHHHHhcCC
Confidence 556889999999999999999998764
No 284
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.46 E-value=0.025 Score=54.37 Aligned_cols=25 Identities=32% Similarity=0.503 Sum_probs=21.8
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHh
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
..+++++|+.|+||||++..+....
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~ 215 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARA 215 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999887653
No 285
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=96.45 E-value=0.003 Score=55.06 Aligned_cols=28 Identities=36% Similarity=0.547 Sum_probs=24.1
Q ss_pred CCceEEEEEecCCCcHHHHHHHHHHHhc
Q 047930 173 PDVNMLGIYGMGGIGKTTLAKEVARKAE 200 (395)
Q Consensus 173 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (395)
+...+|+|+|++|+|||||++.+.....
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3457899999999999999999987654
No 286
>PRK14974 cell division protein FtsY; Provisional
Probab=96.45 E-value=0.021 Score=53.29 Aligned_cols=57 Identities=23% Similarity=0.294 Sum_probs=37.1
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcC--CHHHHHHHHHHHhCCC
Q 047930 174 DVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQ--DIRKIQGEFADKLGLT 233 (395)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~--~~~~~~~~i~~~l~~~ 233 (395)
++.+|.++|+.|+||||++..++...... .+ .++.++. ..+ ...+.++..+..++.+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~-g~-~V~li~~-Dt~R~~a~eqL~~~a~~lgv~ 197 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKN-GF-SVVIAAG-DTFRAGAIEQLEEHAERLGVK 197 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc-CC-eEEEecC-CcCcHHHHHHHHHHHHHcCCc
Confidence 46899999999999999988888765532 23 2334432 222 2334456667777654
No 287
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=96.43 E-value=0.32 Score=45.16 Aligned_cols=47 Identities=19% Similarity=0.160 Sum_probs=34.4
Q ss_pred eeecCCCChHHHHHHHHHhhCCCCCC--CchHHHHHHHHHHcCCchHHH
Q 047930 304 NFSFDVLKEDEAWSLFKKMAGDYIEG--SEFKWVAREVAKECAGLPVSI 350 (395)
Q Consensus 304 ~~~l~~L~~~e~~~lf~~~~~~~~~~--~~~~~~~~~i~~~c~GlPlai 350 (395)
++++++++.+|+..++.-........ ..-+...+++.-..+|+|.-+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHh
Confidence 78999999999999998877422211 333445677887889999754
No 288
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=96.43 E-value=0.0017 Score=52.63 Aligned_cols=43 Identities=21% Similarity=0.307 Sum_probs=27.7
Q ss_pred chHHHHHHHHHHhc--CCCceEEEEEecCCCcHHHHHHHHHHHhc
Q 047930 158 SRMSTLNDILDALK--NPDVNMLGIYGMGGIGKTTLAKEVARKAE 200 (395)
Q Consensus 158 gr~~~~~~l~~~l~--~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (395)
|+...+.++.+.+. ......|.|+|..|+||+++|+.++....
T Consensus 2 G~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~~ 46 (138)
T PF14532_consen 2 GKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYSG 46 (138)
T ss_dssp -SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTTT
T ss_pred CCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhcC
Confidence 33344444444443 12334567999999999999999988654
No 289
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.41 E-value=0.018 Score=57.06 Aligned_cols=87 Identities=14% Similarity=0.182 Sum_probs=57.5
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCccc----------------c
Q 047930 174 DVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFADKLGLTLHE----------------E 237 (395)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~----------------~ 237 (395)
.-.++.|.|++|+|||||+.++......+ -..++|++... +..++...+ +.++.+..+ .
T Consensus 262 ~gs~~li~G~~G~GKt~l~~~f~~~~~~~--ge~~~y~s~eE--s~~~i~~~~-~~lg~~~~~~~~~g~l~~~~~~p~~~ 336 (484)
T TIGR02655 262 KDSIILATGATGTGKTLLVSKFLENACAN--KERAILFAYEE--SRAQLLRNA-YSWGIDFEEMEQQGLLKIICAYPESA 336 (484)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEEeeC--CHHHHHHHH-HHcCCChHHHhhCCcEEEEEcccccC
Confidence 34688899999999999999998876433 34567776644 455665554 455433211 1
Q ss_pred chhhhHHHHHHHHhcCCeEEEEEeCCCC
Q 047930 238 TESGRARSLCNRLKKEKRILVILDNIWE 265 (395)
Q Consensus 238 ~~~~~~~~l~~~l~~~kr~LlVlDdv~~ 265 (395)
...+.+..+.+.+...+.-++|+|.+..
T Consensus 337 ~~~~~~~~i~~~i~~~~~~~vvIDsi~~ 364 (484)
T TIGR02655 337 GLEDHLQIIKSEIADFKPARIAIDSLSA 364 (484)
T ss_pred ChHHHHHHHHHHHHHcCCCEEEEcCHHH
Confidence 1134566777777655667899999853
No 290
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.40 E-value=0.031 Score=57.46 Aligned_cols=25 Identities=32% Similarity=0.526 Sum_probs=22.2
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHh
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
.+++.++|+.|+||||++.++....
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~ 209 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARC 209 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhH
Confidence 4699999999999999999988765
No 291
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=96.40 E-value=0.024 Score=47.37 Aligned_cols=115 Identities=21% Similarity=0.173 Sum_probs=63.1
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhcccCCCCE-EE-EEEeCCcCCHHHHHHHHHHHh-----CCC--ccccc---hhh-
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQ-VI-FVEVSQIQDIRKIQGEFADKL-----GLT--LHEET---ESG- 241 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~-~~-wv~~s~~~~~~~~~~~i~~~l-----~~~--~~~~~---~~~- 241 (395)
...|-|++..|.||||.|..+.-...... +.. ++ |+.-.........+..+ .+ +.. ....+ +..
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~ra~~~g-~~v~ivQFlKg~~~~GE~~~l~~~--~~~~~~~g~g~~~~~~~~~~~~~~ 81 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALRALGHG-KKVGVIQFIKGAWPNGERAAFEPH--GVEFQVMGTGFTWETQNREADTAI 81 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHHHHHCC-CeEEEEEEecCCcccChHHHHHhc--CcEEEECCCCCeecCCCcHHHHHH
Confidence 35788888899999999999887765433 222 11 34333233444444443 11 110 00001 111
Q ss_pred ---hHHHHHHHHhcCCeEEEEEeCCCCc-----cccchhccccCCCCCCcEEEEeecch
Q 047930 242 ---RARSLCNRLKKEKRILVILDNIWEN-----LDFQAVGIPHGDGHKGSKVLLTARSL 292 (395)
Q Consensus 242 ---~~~~l~~~l~~~kr~LlVlDdv~~~-----~~~~~l~~~l~~~~~gs~iivTtR~~ 292 (395)
......+.+..+.-=|||||++-.. ...+.+...+....++.-||+|.|+.
T Consensus 82 ~~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 82 AKAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 2233444444444459999998533 23334444444455677899999985
No 292
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=96.40 E-value=0.024 Score=51.04 Aligned_cols=90 Identities=23% Similarity=0.328 Sum_probs=56.9
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhc--ccCCCCEEEEEEeCCcC-CHHHHHHHHHHHhCCCc-------cccchh-----
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARKAE--NEKLFDQVIFVEVSQIQ-DIRKIQGEFADKLGLTL-------HEETES----- 240 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~--~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~-------~~~~~~----- 240 (395)
.-++|.|-.|+|||+|+..+.++.. .+.+-+.++++-+.+.. ...+++.++...-.... ...+..
T Consensus 70 QR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~~a 149 (276)
T cd01135 70 QKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERIIT 149 (276)
T ss_pred CEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHHHH
Confidence 3478999999999999999887754 11234678888887654 45666666655422110 011111
Q ss_pred -hhHHHHHHHHh-c-CCeEEEEEeCCCC
Q 047930 241 -GRARSLCNRLK-K-EKRILVILDNIWE 265 (395)
Q Consensus 241 -~~~~~l~~~l~-~-~kr~LlVlDdv~~ 265 (395)
...-.+.+++. + +++.|+++||+-.
T Consensus 150 ~~~a~aiAEyfrd~~g~~VLl~~D~ltr 177 (276)
T cd01135 150 PRMALTTAEYLAYEKGKHVLVILTDMTN 177 (276)
T ss_pred HHHHHHHHHHHHhccCCeEEEEEcChhH
Confidence 11224555554 2 7899999999954
No 293
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.39 E-value=0.021 Score=48.41 Aligned_cols=114 Identities=21% Similarity=0.299 Sum_probs=59.2
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEE---eCCcCCHHHHH------HHHHHHhCCCcc------ccchh
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVE---VSQIQDIRKIQ------GEFADKLGLTLH------EETES 240 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~---~s~~~~~~~~~------~~i~~~l~~~~~------~~~~~ 240 (395)
.+++|.|+.|+|||||++.++..... ..+.+++. +.. .+..... .++++.++.... ..+..
T Consensus 26 ~~~~l~G~nGsGKStLl~~i~G~~~~---~~G~v~~~g~~~~~-~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G 101 (180)
T cd03214 26 EIVGILGPNGAGKSTLLKTLAGLLKP---SSGEILLDGKDLAS-LSPKELARKIAYVPQALELLGLAHLADRPFNELSGG 101 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCC---CCcEEEECCEECCc-CCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHH
Confidence 57999999999999999999875432 33444432 211 1222211 123444443211 11111
Q ss_pred h-hHHHHHHHHhcCCeEEEEEeCCCCccc---cchhccccCC-CCC-CcEEEEeecchhh
Q 047930 241 G-RARSLCNRLKKEKRILVILDNIWENLD---FQAVGIPHGD-GHK-GSKVLLTARSLDV 294 (395)
Q Consensus 241 ~-~~~~l~~~l~~~kr~LlVlDdv~~~~~---~~~l~~~l~~-~~~-gs~iivTtR~~~v 294 (395)
. ..-.+...+. ..+-++++|+.-..-+ ...+...+.. ... +..||++|.+...
T Consensus 102 ~~qrl~laral~-~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~ 160 (180)
T cd03214 102 ERQRVLLARALA-QEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNL 160 (180)
T ss_pred HHHHHHHHHHHh-cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 1 1223444444 4678999999854322 2222222211 112 5678888887554
No 294
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.39 E-value=0.02 Score=50.99 Aligned_cols=118 Identities=24% Similarity=0.289 Sum_probs=64.4
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCC-----cCCHHHHHHHHHHHhCCCcc-------ccchhh
Q 047930 174 DVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQ-----IQDIRKIQGEFADKLGLTLH-------EETESG 241 (395)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~-----~~~~~~~~~~i~~~l~~~~~-------~~~~~~ 241 (395)
+-.+++|+|.+|+|||||++.+..-... -.+.++..-.+ .....+...+++..++.... +-+...
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L~~p---t~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQ 114 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGLEEP---TSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQ 114 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcCcCC---CCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchh
Confidence 3457999999999999999999875542 22333332211 12233445566666664321 122222
Q ss_pred hHH-HHHHHHhcCCeEEEEEeCCCCccc------cchhccccCCCCCCcEEEEeecchhhhh
Q 047930 242 RAR-SLCNRLKKEKRILVILDNIWENLD------FQAVGIPHGDGHKGSKVLLTARSLDVLS 296 (395)
Q Consensus 242 ~~~-~l~~~l~~~kr~LlVlDdv~~~~~------~~~l~~~l~~~~~gs~iivTtR~~~va~ 296 (395)
... .+...|. -++-|+|.|+.-+..+ .-.+...+. ...|...+..|.+..++.
T Consensus 115 rQRi~IARALa-l~P~liV~DEpvSaLDvSiqaqIlnLL~dlq-~~~~lt~lFIsHDL~vv~ 174 (268)
T COG4608 115 RQRIGIARALA-LNPKLIVADEPVSALDVSVQAQILNLLKDLQ-EELGLTYLFISHDLSVVR 174 (268)
T ss_pred hhhHHHHHHHh-hCCcEEEecCchhhcchhHHHHHHHHHHHHH-HHhCCeEEEEEEEHHhhh
Confidence 222 2333333 5788999999765422 111222221 123556777777776654
No 295
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.39 E-value=0.021 Score=54.35 Aligned_cols=89 Identities=16% Similarity=0.181 Sum_probs=50.6
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhccc--CCCCEEEEEEeCCc-CCHHHHHHHHHHHhCCCccccchhhhHHHHHHHH
Q 047930 174 DVNMLGIYGMGGIGKTTLAKEVARKAENE--KLFDQVIFVEVSQI-QDIRKIQGEFADKLGLTLHEETESGRARSLCNRL 250 (395)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~--~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l 250 (395)
..++|.++|+.|+||||.+..++...... ..-..+..+++... .....-++..++.++.+.........+......+
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~ 252 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS 252 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence 45789999999999999999988765421 11223555655432 1223336666666665433222222222222232
Q ss_pred hcCCeEEEEEeCCC
Q 047930 251 KKEKRILVILDNIW 264 (395)
Q Consensus 251 ~~~kr~LlVlDdv~ 264 (395)
.+.=++++|..-
T Consensus 253 --~~~DlVLIDTaG 264 (388)
T PRK12723 253 --KDFDLVLVDTIG 264 (388)
T ss_pred --CCCCEEEEcCCC
Confidence 234578888873
No 296
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.38 E-value=0.0068 Score=50.60 Aligned_cols=111 Identities=18% Similarity=0.222 Sum_probs=56.5
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCc--CCHHHHHHHHHHHhCCCccccchhh-hHHHHHHHHhc
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQI--QDIRKIQGEFADKLGLTLHEETESG-RARSLCNRLKK 252 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~--~~~~~~~~~i~~~l~~~~~~~~~~~-~~~~l~~~l~~ 252 (395)
.+++|.|+.|+|||||.+.++.... ...+.+++.-... .+..+.. ...++.-. ..+..+ ..-.+...+.
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~~~---~~~G~v~~~g~~~~~~~~~~~~---~~~i~~~~-qLS~G~~qrl~laral~- 98 (163)
T cd03216 27 EVHALLGENGAGKSTLMKILSGLYK---PDSGEILVDGKEVSFASPRDAR---RAGIAMVY-QLSVGERQMVEIARALA- 98 (163)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEECCcCCHHHHH---hcCeEEEE-ecCHHHHHHHHHHHHHh-
Confidence 4789999999999999999986543 2344455432111 1111111 11111110 111111 1223444444
Q ss_pred CCeEEEEEeCCCCccc---cchhccccCC-CCCCcEEEEeecchhh
Q 047930 253 EKRILVILDNIWENLD---FQAVGIPHGD-GHKGSKVLLTARSLDV 294 (395)
Q Consensus 253 ~kr~LlVlDdv~~~~~---~~~l~~~l~~-~~~gs~iivTtR~~~v 294 (395)
.++-++++|+.-..-+ ...+...+.. ...|..||++|.+...
T Consensus 99 ~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~ 144 (163)
T cd03216 99 RNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDE 144 (163)
T ss_pred cCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 4678999999854322 2222222211 1236678888888653
No 297
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=96.38 E-value=0.016 Score=54.33 Aligned_cols=44 Identities=18% Similarity=0.252 Sum_probs=28.8
Q ss_pred hchHHHHHHHHHHhc--CCCceEEEEEecCCCcHHHHHHHHHHHhc
Q 047930 157 ESRMSTLNDILDALK--NPDVNMLGIYGMGGIGKTTLAKEVARKAE 200 (395)
Q Consensus 157 ~gr~~~~~~l~~~l~--~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (395)
+|+...+.++.+.+. .....-|.|.|..|+||+++|+.+++...
T Consensus 2 iG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~s~ 47 (329)
T TIGR02974 2 IGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLSK 47 (329)
T ss_pred CcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHhcC
Confidence 344444444444433 12233477999999999999999987654
No 298
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.37 E-value=0.013 Score=49.63 Aligned_cols=24 Identities=25% Similarity=0.441 Sum_probs=21.4
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHh
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
.+++|.|+.|+|||||++.+....
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 29 EKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhccC
Confidence 478999999999999999998754
No 299
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.37 E-value=0.023 Score=55.54 Aligned_cols=59 Identities=17% Similarity=0.227 Sum_probs=35.9
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCC-cCCHHHHHHHHHHHhCCC
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQ-IQDIRKIQGEFADKLGLT 233 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~~ 233 (395)
..+++++|+.|+||||++.+++.....+.....+..++... .....+-++...+.++.+
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVp 315 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVP 315 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCC
Confidence 36999999999999999999997654322122345555432 122334444445555443
No 300
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.36 E-value=0.0092 Score=50.46 Aligned_cols=25 Identities=40% Similarity=0.531 Sum_probs=21.8
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHh
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
-.+++|+|+.|+|||||++.+..-.
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHcCC
Confidence 3579999999999999999988654
No 301
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.35 E-value=0.0053 Score=50.41 Aligned_cols=36 Identities=28% Similarity=0.403 Sum_probs=27.4
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEE
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVE 212 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~ 212 (395)
..+|-|.|.+|+||||||+.+........ ..+.++.
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~g--~~~~~LD 37 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFARG--IKVYLLD 37 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTT--S-EEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHcC--CcEEEec
Confidence 35899999999999999999999876542 3345553
No 302
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=96.34 E-value=0.011 Score=52.34 Aligned_cols=61 Identities=23% Similarity=0.263 Sum_probs=37.6
Q ss_pred HHHHHHHhc--CCCceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHH
Q 047930 163 LNDILDALK--NPDVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQ 223 (395)
Q Consensus 163 ~~~l~~~l~--~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~ 223 (395)
-.+++..+. .++..+|+|.|++|.|||||...+......+.+--.++=|.-|++++--.++
T Consensus 15 ~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlL 77 (266)
T PF03308_consen 15 ARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALL 77 (266)
T ss_dssp HHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS
T ss_pred HHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCccc
Confidence 334444443 4567899999999999999999999887765444445555556666544443
No 303
>PF12061 DUF3542: Protein of unknown function (DUF3542); InterPro: IPR021929 R1 is a gene for resistance to late blight, the most destructive disease in potato cultivation worldwide. The R1 gene belongs to the class of plant genes for pathogen resistance that have a leucine zipper motif, a putative nucleotide binding domain and a leucine-rich repeat domain []. Most proteins matching this entry are found associated with PF00931 from PFAM.
Probab=96.33 E-value=0.021 Score=51.38 Aligned_cols=91 Identities=14% Similarity=0.032 Sum_probs=62.9
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHhhhhhhHhhccccccCCCcchhHh
Q 047930 31 KYTSNLQNLKTEVGNLEAERVSKQREVDEAKRRGEEIEKYVEKWLASVNGVIDEAEKFTGVDARANKRCFKGLCPNLKIR 110 (395)
Q Consensus 31 ~~~~~~~~l~~~i~~l~~~l~~i~~~l~~a~~~~~~~~~~~~~Wl~~lr~~a~d~ed~ld~~~~~~~~~~~~~~~~~~~r 110 (395)
.+.+.+.-++.+++-++.+++.++.||+..-..+...-.....+..++...||++|.++|..-.... +.+.....-
T Consensus 311 rysdSlaflKnQiqvIQ~elesLqpFLk~V~ee~~nkh~~~ed~a~~ii~kAyevEYVVDaCi~k~~----P~Wcl~~WL 386 (402)
T PF12061_consen 311 RYSDSLAFLKNQIQVIQTELESLQPFLKHVVEEPHNKHDTNEDCATQIIRKAYEVEYVVDACISKSV----PHWCLERWL 386 (402)
T ss_pred cccchHHHHHHHHHHHHHHHHHhhHHHHHHHhccchhhhhhhhHHHHHHHHHhheeeeeehhhcCCC----cHHHHHHHH
Confidence 3444568899999999999999999999874442233445899999999999999999996432110 001123334
Q ss_pred hHHHHHHHHHHHHHH
Q 047930 111 RRLSKEAERQKEAIV 125 (395)
Q Consensus 111 ~~i~~~i~~~~~~l~ 125 (395)
..+..+|.-++++++
T Consensus 387 ~dIieei~~ik~~i~ 401 (402)
T PF12061_consen 387 LDIIEEITCIKAKIQ 401 (402)
T ss_pred HHHHHHHHHHHHHhc
Confidence 556666666666654
No 304
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=96.32 E-value=0.0094 Score=50.91 Aligned_cols=48 Identities=25% Similarity=0.245 Sum_probs=33.3
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHH
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFA 227 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 227 (395)
..+|+|-||=|+||||||+.+.++.... .++-.+.+++-+..++.++-
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~~~-----~~~E~vednp~L~~FY~d~~ 51 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLGFK-----VFYELVEDNPFLDLFYEDPE 51 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhCCc-----eeeecccCChHHHHHHHhHH
Confidence 4689999999999999999999987632 23333444444444444443
No 305
>PRK11823 DNA repair protein RadA; Provisional
Probab=96.29 E-value=0.017 Score=56.32 Aligned_cols=85 Identities=27% Similarity=0.345 Sum_probs=53.3
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCccc--cchhhhHHHHHHHHhc
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFADKLGLTLHE--ETESGRARSLCNRLKK 252 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~l~~~l~~ 252 (395)
-.++.|.|.+|+|||||+.++......+ -..++|++.... ..++... ++.++..... ......+..+.+.+.+
T Consensus 80 Gs~~lI~G~pG~GKTtL~lq~a~~~a~~--g~~vlYvs~Ees--~~qi~~r-a~rlg~~~~~l~~~~e~~l~~i~~~i~~ 154 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLLLQVAARLAAA--GGKVLYVSGEES--ASQIKLR-AERLGLPSDNLYLLAETNLEAILATIEE 154 (446)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEEcccc--HHHHHHH-HHHcCCChhcEEEeCCCCHHHHHHHHHh
Confidence 4588999999999999999998875422 234778776543 3343322 4555542221 0111234566666655
Q ss_pred CCeEEEEEeCCC
Q 047930 253 EKRILVILDNIW 264 (395)
Q Consensus 253 ~kr~LlVlDdv~ 264 (395)
.+.-++|+|.+.
T Consensus 155 ~~~~lVVIDSIq 166 (446)
T PRK11823 155 EKPDLVVIDSIQ 166 (446)
T ss_pred hCCCEEEEechh
Confidence 566799999985
No 306
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=96.28 E-value=0.0046 Score=50.13 Aligned_cols=39 Identities=15% Similarity=0.290 Sum_probs=28.6
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCC
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQ 215 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~ 215 (395)
++|.|+|..|+|||||++.+.+....+ .+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~-g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRR-GYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHT-T--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHc-CCceEEEEEccC
Confidence 479999999999999999999997654 355555666554
No 307
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=96.28 E-value=0.0021 Score=54.90 Aligned_cols=21 Identities=29% Similarity=0.260 Sum_probs=18.7
Q ss_pred EEEEEecCCCcHHHHHHHHHH
Q 047930 177 MLGIYGMGGIGKTTLAKEVAR 197 (395)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~ 197 (395)
++.|.|+.|.||||+.+.+.-
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~ 21 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGL 21 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHH
Confidence 467999999999999999884
No 308
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=96.28 E-value=0.0065 Score=54.59 Aligned_cols=61 Identities=28% Similarity=0.388 Sum_probs=45.3
Q ss_pred HHHHHhc--CCCceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHH
Q 047930 165 DILDALK--NPDVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGE 225 (395)
Q Consensus 165 ~l~~~l~--~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 225 (395)
+++..+. .++..+|+|.|.+|+|||||.-.+......+.+--.++=|.-|++++--.++.+
T Consensus 39 ~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGD 101 (323)
T COG1703 39 ELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGD 101 (323)
T ss_pred HHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCcccccc
Confidence 4444443 567889999999999999999999988876665555666666777765555443
No 309
>PRK14527 adenylate kinase; Provisional
Probab=96.27 E-value=0.019 Score=49.23 Aligned_cols=28 Identities=25% Similarity=0.311 Sum_probs=24.1
Q ss_pred CCceEEEEEecCCCcHHHHHHHHHHHhc
Q 047930 173 PDVNMLGIYGMGGIGKTTLAKEVARKAE 200 (395)
Q Consensus 173 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (395)
....+|.|+|++|+||||+|+.+.+...
T Consensus 4 ~~~~~i~i~G~pGsGKsT~a~~La~~~~ 31 (191)
T PRK14527 4 TKNKVVIFLGPPGAGKGTQAERLAQELG 31 (191)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3457899999999999999999987654
No 310
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.27 E-value=0.015 Score=47.48 Aligned_cols=24 Identities=38% Similarity=0.614 Sum_probs=21.4
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHh
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
.+++|.|..|.|||||++.+....
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 27 DRIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCC
Confidence 578999999999999999998754
No 311
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=96.26 E-value=0.057 Score=42.41 Aligned_cols=27 Identities=22% Similarity=0.326 Sum_probs=23.7
Q ss_pred CCceEEEEEecCCCcHHHHHHHHHHHh
Q 047930 173 PDVNMLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 173 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
+++-|++.+|.+|+|||.+++.+++..
T Consensus 51 ~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 51 RKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred CCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 457899999999999999999988873
No 312
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=96.25 E-value=0.029 Score=50.67 Aligned_cols=40 Identities=23% Similarity=0.410 Sum_probs=30.1
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCC
Q 047930 174 DVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQ 215 (395)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~ 215 (395)
.-.++.|.|.+|+|||+++.++......+ -..++|++...
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~--Ge~vlyis~Ee 74 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQASR--GNPVLFVTVES 74 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhC--CCcEEEEEecC
Confidence 34688899999999999999987654322 23577888764
No 313
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.25 E-value=0.0043 Score=52.98 Aligned_cols=26 Identities=27% Similarity=0.356 Sum_probs=22.9
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHh
Q 047930 174 DVNMLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
+.++|.|.|++|+||||+++.+....
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 35789999999999999999998764
No 314
>PRK03839 putative kinase; Provisional
Probab=96.25 E-value=0.004 Score=52.88 Aligned_cols=24 Identities=42% Similarity=0.638 Sum_probs=21.7
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhc
Q 047930 177 MLGIYGMGGIGKTTLAKEVARKAE 200 (395)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~~ 200 (395)
.|.|.|++|+||||+++.+++...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999998864
No 315
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=96.25 E-value=0.038 Score=50.00 Aligned_cols=90 Identities=20% Similarity=0.293 Sum_probs=54.5
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHHHH-hCCC-ccccchhhhHHHHHHHHh
Q 047930 174 DVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFADK-LGLT-LHEETESGRARSLCNRLK 251 (395)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~-l~~~-~~~~~~~~~~~~l~~~l~ 251 (395)
.-+++=|+|+.|+||||+|.+++-..... -..++|++.-+.++++.+.. +... +..- .......+....+.+.+.
T Consensus 59 ~g~ItEiyG~~gsGKT~lal~~~~~aq~~--g~~a~fIDtE~~l~p~r~~~-l~~~~~d~l~v~~~~~~e~q~~i~~~~~ 135 (279)
T COG0468 59 RGRITEIYGPESSGKTTLALQLVANAQKP--GGKAAFIDTEHALDPERAKQ-LGVDLLDNLLVSQPDTGEQQLEIAEKLA 135 (279)
T ss_pred cceEEEEecCCCcchhhHHHHHHHHhhcC--CCeEEEEeCCCCCCHHHHHH-HHHhhhcceeEecCCCHHHHHHHHHHHH
Confidence 34678899999999999999988765433 44789999999888876443 3333 2110 001111112222222222
Q ss_pred c---CCeEEEEEeCCCCc
Q 047930 252 K---EKRILVILDNIWEN 266 (395)
Q Consensus 252 ~---~kr~LlVlDdv~~~ 266 (395)
. .+--|+|+|.+-..
T Consensus 136 ~~~~~~i~LvVVDSvaa~ 153 (279)
T COG0468 136 RSGAEKIDLLVVDSVAAL 153 (279)
T ss_pred HhccCCCCEEEEecCccc
Confidence 1 23569999998543
No 316
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.25 E-value=0.035 Score=50.47 Aligned_cols=56 Identities=25% Similarity=0.351 Sum_probs=35.7
Q ss_pred CCceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCH--HHHHHHHHHHhC
Q 047930 173 PDVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDI--RKIQGEFADKLG 231 (395)
Q Consensus 173 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~--~~~~~~i~~~l~ 231 (395)
.+.+++.++|++|+||||++..++...... -..+..++... +.. .+-+....+..+
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~--g~~V~li~~D~-~r~~a~~ql~~~~~~~~ 127 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQ--GKSVLLAAGDT-FRAAAIEQLEEWAKRLG 127 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhc--CCEEEEEeCCC-CCHHHHHHHHHHHHhCC
Confidence 346789999999999999999998776432 23455565432 222 233344455554
No 317
>PTZ00494 tuzin-like protein; Provisional
Probab=96.24 E-value=0.1 Score=49.89 Aligned_cols=162 Identities=9% Similarity=0.100 Sum_probs=96.9
Q ss_pred cccchhchHHHHH---HHHHHhcCCCceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHHH
Q 047930 152 DYEAFESRMSTLN---DILDALKNPDVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFAD 228 (395)
Q Consensus 152 ~~~~~~gr~~~~~---~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 228 (395)
....++.|+.+-. +++..+....++++.+.|..|.||++|.+......... .++|.+... ++-++.+.+
T Consensus 369 ~~~~~V~R~~eE~~vRqvL~qld~aHPRIvV~TG~~GcGKSslcRsAvrkE~~p-----aV~VDVRg~---EDtLrsVVK 440 (664)
T PTZ00494 369 AEAFEVRREDEEALVRSVLTQMAPSHPRIVALAGGSGGGRCVPCRRAVRVEGVA-----LVHVDVGGT---EDTLRSVVR 440 (664)
T ss_pred ccccccchhhHHHHHHHHHhhccCCCCcEEEEecCCCCCchHHHHHHHHHcCCC-----eEEEEecCC---cchHHHHHH
Confidence 3445777776543 44444556678999999999999999999988765533 567777654 456788999
Q ss_pred HhCCCccccchhhhHHHHHHHH------hcCCeEEEEEe--CCCCcc-ccchhccccCCCCCCcEEEEeecchhh--hhh
Q 047930 229 KLGLTLHEETESGRARSLCNRL------KKEKRILVILD--NIWENL-DFQAVGIPHGDGHKGSKVLLTARSLDV--LSR 297 (395)
Q Consensus 229 ~l~~~~~~~~~~~~~~~l~~~l------~~~kr~LlVlD--dv~~~~-~~~~l~~~l~~~~~gs~iivTtR~~~v--a~~ 297 (395)
.++.+..+. -.+.++.+.+.. ..++.-+||+- +=.+.. .+.+. ..+.....-|.|++----+.+ +..
T Consensus 441 ALgV~nve~-CGDlLdFI~ea~~~A~~~~~g~~P~lVlkLREGssL~RVYnE~-vaLacDrRlCHvv~EVplESLT~~n~ 518 (664)
T PTZ00494 441 ALGVSNVEV-CGDLLGFVEEAMRGATVKASDGVPFLVMRLREGSDLGRVYGEV-VSLVSDCQACHIVLAVPMKALTPLNV 518 (664)
T ss_pred HhCCCChhh-hccHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCcHHHHHHHH-HHHHccchhheeeeechHhhhchhhc
Confidence 998765432 112233222222 12555666653 111111 12221 223334455667664333322 112
Q ss_pred cCCCcceeecCCCChHHHHHHHHHhh
Q 047930 298 KMDSQQNFSFDVLKEDEAWSLFKKMA 323 (395)
Q Consensus 298 ~~~~~~~~~l~~L~~~e~~~lf~~~~ 323 (395)
..+.-..|-+++++.++|.++-.+..
T Consensus 519 ~LPRLDFy~VPnFSr~QAf~YtqH~l 544 (664)
T PTZ00494 519 SSRRLDFYCIPPFSRRQAFAYAEHTL 544 (664)
T ss_pred cCccceeEecCCcCHHHHHHHHhccc
Confidence 33455689999999999998887665
No 318
>PRK00131 aroK shikimate kinase; Reviewed
Probab=96.24 E-value=0.0046 Score=51.98 Aligned_cols=27 Identities=22% Similarity=0.382 Sum_probs=23.6
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhc
Q 047930 174 DVNMLGIYGMGGIGKTTLAKEVARKAE 200 (395)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (395)
+...|.++|++|+||||+|+.+.....
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~ 29 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLG 29 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhC
Confidence 346799999999999999999998764
No 319
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=96.22 E-value=0.0049 Score=53.20 Aligned_cols=28 Identities=43% Similarity=0.590 Sum_probs=24.8
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhcc
Q 047930 174 DVNMLGIYGMGGIGKTTLAKEVARKAEN 201 (395)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 201 (395)
++.+|+|.|.+|+||||+|+.++.....
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~~~ 34 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQLGV 34 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHhCc
Confidence 4578999999999999999999988764
No 320
>PRK10867 signal recognition particle protein; Provisional
Probab=96.22 E-value=0.033 Score=53.87 Aligned_cols=28 Identities=29% Similarity=0.414 Sum_probs=23.2
Q ss_pred CCceEEEEEecCCCcHHHHHHHHHHHhc
Q 047930 173 PDVNMLGIYGMGGIGKTTLAKEVARKAE 200 (395)
Q Consensus 173 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (395)
..+.+|.++|+.|+||||++..++....
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~~l~ 125 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAKYLK 125 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 3467999999999999998888876544
No 321
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.21 E-value=0.0037 Score=52.96 Aligned_cols=27 Identities=41% Similarity=0.597 Sum_probs=23.0
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhccc
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARKAENE 202 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~~ 202 (395)
+.|.+.|.+|+||||+|+++....+.+
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~ 28 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQE 28 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHh
Confidence 467889999999999999999876643
No 322
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=96.21 E-value=0.022 Score=55.36 Aligned_cols=88 Identities=20% Similarity=0.375 Sum_probs=56.8
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcC-CHHHHHHHHHHHhCCC--------ccccchh-----h
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQ-DIRKIQGEFADKLGLT--------LHEETES-----G 241 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~--------~~~~~~~-----~ 241 (395)
.-++|.|.+|+|||||+.++......+ +-+.++++-+.... ...++..++...-... .++.... .
T Consensus 144 QR~gIfa~~G~GKt~Ll~~~~~~~~~~-~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a~~ 222 (461)
T PRK12597 144 GKTGLFGGAGVGKTVLMMELIFNISKQ-HSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRVVL 222 (461)
T ss_pred CEEEeecCCCCChhHHHHHHHHHHHhh-CCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHHHH
Confidence 458999999999999999998876643 56778888776543 4566666665432111 1111110 1
Q ss_pred hHHHHHHHHh-c-CCeEEEEEeCCC
Q 047930 242 RARSLCNRLK-K-EKRILVILDNIW 264 (395)
Q Consensus 242 ~~~~l~~~l~-~-~kr~LlVlDdv~ 264 (395)
....+.+++. + ++++||++||+-
T Consensus 223 ~a~tiAEyfrd~~G~~VLl~~DslT 247 (461)
T PRK12597 223 TGLTIAEYLRDEEKEDVLLFIDNIF 247 (461)
T ss_pred HHHHHHHHHHHhcCCceEEEeccch
Confidence 2234555553 3 799999999993
No 323
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.20 E-value=0.038 Score=53.39 Aligned_cols=26 Identities=27% Similarity=0.332 Sum_probs=22.8
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHh
Q 047930 174 DVNMLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
.+.++.++|+.|+||||++..++...
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l 123 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYL 123 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 46789999999999999998888764
No 324
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=96.20 E-value=0.018 Score=55.52 Aligned_cols=87 Identities=21% Similarity=0.268 Sum_probs=48.5
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHHHHhCC-------Cccccchh-----hhH
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFADKLGL-------TLHEETES-----GRA 243 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~-------~~~~~~~~-----~~~ 243 (395)
..++|+|.+|+|||||++.+...... ..++++..-....++.++....+..... +.++.... ...
T Consensus 166 qri~I~G~SGsGKTTLL~~Ia~l~~p---d~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~~a 242 (450)
T PRK06002 166 QRIGIFAGSGVGKSTLLAMLARADAF---DTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPLTA 242 (450)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCC---CeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHHHH
Confidence 46899999999999999988764431 2334444332344555544444333210 11111110 112
Q ss_pred HHHHHHHh-cCCeEEEEEeCCCC
Q 047930 244 RSLCNRLK-KEKRILVILDNIWE 265 (395)
Q Consensus 244 ~~l~~~l~-~~kr~LlVlDdv~~ 265 (395)
-.+.+++. +++..||++||+-.
T Consensus 243 ~~iAEyfrd~G~~Vll~~DslTr 265 (450)
T PRK06002 243 TAIAEYFRDRGENVLLIVDSVTR 265 (450)
T ss_pred HHHHHHHHHcCCCEEEeccchHH
Confidence 23444442 48999999999843
No 325
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=96.20 E-value=0.014 Score=51.52 Aligned_cols=63 Identities=21% Similarity=0.179 Sum_probs=36.8
Q ss_pred HHHHHHhcCCCceEEEEEecCCCcHHHHHHHHHHHhc-----ccCCCCEEEEEEeCCcCCHHHHHHHHHH
Q 047930 164 NDILDALKNPDVNMLGIYGMGGIGKTTLAKEVARKAE-----NEKLFDQVIFVEVSQIQDIRKIQGEFAD 228 (395)
Q Consensus 164 ~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~-----~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 228 (395)
+.+...+..+. +..|+|++|+||||++..+..... ........+-++...+.....++..+.+
T Consensus 8 ~Ai~~~~~~~~--~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 8 EAIQSALSSNG--ITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp HHHHHHCTSSE---EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCC--CEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 33444443332 688999999999987777776651 1122344555555555566777777666
No 326
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=96.18 E-value=0.028 Score=54.13 Aligned_cols=87 Identities=18% Similarity=0.305 Sum_probs=52.2
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcC-CHHHHHHHHHHHhCCC--------ccccchh----
Q 047930 174 DVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQ-DIRKIQGEFADKLGLT--------LHEETES---- 240 (395)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~--------~~~~~~~---- 240 (395)
+-..++|.|..|+|||||++.++.... .+.++++-+.... ...++..+.+..-+.. .++....
T Consensus 157 ~Gqri~I~G~sG~GKTtLL~~I~~~~~----~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a 232 (442)
T PRK08927 157 RGQRMGIFAGSGVGKSVLLSMLARNAD----ADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQA 232 (442)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccC----CCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHH
Confidence 345689999999999999999987653 3455566665543 3445555444432211 1111100
Q ss_pred -hhHHHHHHHHh-cCCeEEEEEeCCC
Q 047930 241 -GRARSLCNRLK-KEKRILVILDNIW 264 (395)
Q Consensus 241 -~~~~~l~~~l~-~~kr~LlVlDdv~ 264 (395)
...-.+.+++. +++++||++||+-
T Consensus 233 ~~~a~tiAEyfrd~G~~Vll~~DslT 258 (442)
T PRK08927 233 AYLTLAIAEYFRDQGKDVLCLMDSVT 258 (442)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeCcH
Confidence 11223455552 5899999999994
No 327
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=96.16 E-value=0.012 Score=59.59 Aligned_cols=77 Identities=16% Similarity=0.141 Sum_probs=55.7
Q ss_pred ccccchhchHHHHHHHHHHhcCCCceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHHHHh
Q 047930 151 KDYEAFESRMSTLNDILDALKNPDVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFADKL 230 (395)
Q Consensus 151 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l 230 (395)
.....+.|.+..++.|...+... +.+.++|++|+||||+++.+.+.... .+++..+|..- ...+...+++.++..+
T Consensus 28 ~~~~~vigq~~a~~~L~~~~~~~--~~~l~~G~~G~GKttla~~l~~~l~~-~~~~~~~~~~n-p~~~~~~~~~~v~~~~ 103 (637)
T PRK13765 28 RLIDQVIGQEHAVEVIKKAAKQR--RHVMMIGSPGTGKSMLAKAMAELLPK-EELQDILVYPN-PEDPNNPKIRTVPAGK 103 (637)
T ss_pred ccHHHcCChHHHHHHHHHHHHhC--CeEEEECCCCCcHHHHHHHHHHHcCh-HhHHHheEeeC-CCcchHHHHHHHHHhc
Confidence 44567889888888777766654 36889999999999999999987532 34566777654 3346667777776655
Q ss_pred C
Q 047930 231 G 231 (395)
Q Consensus 231 ~ 231 (395)
+
T Consensus 104 G 104 (637)
T PRK13765 104 G 104 (637)
T ss_pred C
Confidence 4
No 328
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=96.14 E-value=0.0087 Score=56.05 Aligned_cols=49 Identities=16% Similarity=0.234 Sum_probs=41.8
Q ss_pred cccchhchHHHHHHHHHHhcCCCceEEEEEecCCCcHHHHHHHHHHHhc
Q 047930 152 DYEAFESRMSTLNDILDALKNPDVNMLGIYGMGGIGKTTLAKEVARKAE 200 (395)
Q Consensus 152 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (395)
+...++|.++.+..|+..+.++...-+.|.|..|+||||+|+.+++-..
T Consensus 15 pf~~ivGq~~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~l~ 63 (350)
T CHL00081 15 PFTAIVGQEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVDLLP 63 (350)
T ss_pred CHHHHhChHHHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHHHHh
Confidence 4567889998888888888888888888999999999999999987643
No 329
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=96.14 E-value=0.01 Score=47.54 Aligned_cols=35 Identities=31% Similarity=0.471 Sum_probs=27.3
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCc
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQI 216 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~ 216 (395)
.+-|.|.|-+|+||||++.++.....- -|+++|.-
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~~~-------~~i~isd~ 41 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKTGL-------EYIEISDL 41 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHhCC-------ceEehhhH
Confidence 456889999999999999999965442 36666654
No 330
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=96.13 E-value=0.03 Score=54.72 Aligned_cols=86 Identities=24% Similarity=0.355 Sum_probs=52.4
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCcccc--chhhhHHHHHHHHhc
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFADKLGLTLHEE--TESGRARSLCNRLKK 252 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~--~~~~~~~~l~~~l~~ 252 (395)
-.++.|.|.+|+|||||+.++......+. ..++|++.... ..++... +..++...+.. ........+.+.+.+
T Consensus 94 GsvilI~G~pGsGKTTL~lq~a~~~a~~g--~kvlYvs~EEs--~~qi~~r-a~rlg~~~~~l~~~~e~~~~~I~~~i~~ 168 (454)
T TIGR00416 94 GSLILIGGDPGIGKSTLLLQVACQLAKNQ--MKVLYVSGEES--LQQIKMR-AIRLGLPEPNLYVLSETNWEQICANIEE 168 (454)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHhcC--CcEEEEECcCC--HHHHHHH-HHHcCCChHHeEEcCCCCHHHHHHHHHh
Confidence 46788999999999999999977654321 34778776443 3333222 33444322110 011234566666665
Q ss_pred CCeEEEEEeCCCC
Q 047930 253 EKRILVILDNIWE 265 (395)
Q Consensus 253 ~kr~LlVlDdv~~ 265 (395)
.+.-++|+|.+..
T Consensus 169 ~~~~~vVIDSIq~ 181 (454)
T TIGR00416 169 ENPQACVIDSIQT 181 (454)
T ss_pred cCCcEEEEecchh
Confidence 5667899998853
No 331
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=96.13 E-value=0.009 Score=54.10 Aligned_cols=26 Identities=35% Similarity=0.432 Sum_probs=20.5
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhcc
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARKAEN 201 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~ 201 (395)
+.|.|+|.+|+||||+|+++......
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~ 27 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEE 27 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHh
Confidence 46889999999999999999987654
No 332
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.11 E-value=0.031 Score=46.73 Aligned_cols=24 Identities=33% Similarity=0.383 Sum_probs=21.5
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHh
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
.+++|+|+.|.|||||++.+....
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~G~~ 51 (166)
T cd03223 28 DRLLITGPSGTGKSSLFRALAGLW 51 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 478999999999999999998764
No 333
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=96.10 E-value=0.0074 Score=53.36 Aligned_cols=29 Identities=24% Similarity=0.401 Sum_probs=25.3
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhccc
Q 047930 174 DVNMLGIYGMGGIGKTTLAKEVARKAENE 202 (395)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 202 (395)
++.+|.++||+|+||||..+.++.+...+
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~hl~~~ 46 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSHLHAK 46 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHHHhhc
Confidence 46688899999999999999999887655
No 334
>PRK04040 adenylate kinase; Provisional
Probab=96.10 E-value=0.0059 Score=52.21 Aligned_cols=25 Identities=28% Similarity=0.512 Sum_probs=22.6
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhc
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARKAE 200 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (395)
.+|.|+|++|+||||+++.+.+...
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 5799999999999999999998763
No 335
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=96.08 E-value=0.026 Score=58.17 Aligned_cols=83 Identities=22% Similarity=0.304 Sum_probs=54.1
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCccc------cchhhhHHHHHH
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFADKLGLTLHE------ETESGRARSLCN 248 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~------~~~~~~~~~l~~ 248 (395)
-+++-|.|+.|+|||||+.+++...... -..++|+.....++. ..+++++.+.+. .+....+..+.+
T Consensus 60 GsiteI~G~~GsGKTtLal~~~~~a~~~--G~~v~yId~E~t~~~-----~~A~~lGvDl~~llv~~~~~~E~~l~~i~~ 132 (790)
T PRK09519 60 GRVIEIYGPESSGKTTVALHAVANAQAA--GGVAAFIDAEHALDP-----DYAKKLGVDTDSLLVSQPDTGEQALEIADM 132 (790)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEECCccchhH-----HHHHHcCCChhHeEEecCCCHHHHHHHHHH
Confidence 4678899999999999998876654322 245789988776663 366777664321 112223333344
Q ss_pred HHhcCCeEEEEEeCCC
Q 047930 249 RLKKEKRILVILDNIW 264 (395)
Q Consensus 249 ~l~~~kr~LlVlDdv~ 264 (395)
.+..++--|||+|.+.
T Consensus 133 lv~~~~~~LVVIDSI~ 148 (790)
T PRK09519 133 LIRSGALDIVVIDSVA 148 (790)
T ss_pred HhhcCCCeEEEEcchh
Confidence 4444567799999975
No 336
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=96.07 E-value=0.014 Score=51.50 Aligned_cols=87 Identities=18% Similarity=0.236 Sum_probs=50.1
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCcc------------------
Q 047930 174 DVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFADKLGLTLH------------------ 235 (395)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~------------------ 235 (395)
.-.++.|.|.+|+|||+++.++......+ .=..++|++...+ ..++.+.+. .++.+..
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~-~ge~vlyvs~ee~--~~~l~~~~~-s~g~d~~~~~~~g~l~~~d~~~~~~ 93 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKN-FGEKVLYVSFEEP--PEELIENMK-SFGWDLEEYEDSGKLKIIDAFPERI 93 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHH-HT--EEEEESSS---HHHHHHHHH-TTTS-HHHHHHTTSEEEEESSGGGS
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhh-cCCcEEEEEecCC--HHHHHHHHH-HcCCcHHHHhhcCCEEEEecccccc
Confidence 34689999999999999999977554322 0124778887554 455555543 3332111
Q ss_pred ---ccchhhhHHHHHHHHhcCCeEEEEEeCCC
Q 047930 236 ---EETESGRARSLCNRLKKEKRILVILDNIW 264 (395)
Q Consensus 236 ---~~~~~~~~~~l~~~l~~~kr~LlVlDdv~ 264 (395)
..........+.+.+...+...+|+|.+.
T Consensus 94 ~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls 125 (226)
T PF06745_consen 94 GWSPNDLEELLSKIREAIEELKPDRVVIDSLS 125 (226)
T ss_dssp T-TSCCHHHHHHHHHHHHHHHTSSEEEEETHH
T ss_pred cccccCHHHHHHHHHHHHHhcCCCEEEEECHH
Confidence 01112234455555543445799999874
No 337
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=96.07 E-value=0.024 Score=54.46 Aligned_cols=87 Identities=15% Similarity=0.318 Sum_probs=52.3
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcC-CHHHHHHHHHHHhCCCc-------cccchh------
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQ-DIRKIQGEFADKLGLTL-------HEETES------ 240 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~-------~~~~~~------ 240 (395)
-..++|.|..|+|||||++.+..... .+.++++-+.+.. ...++..+++..-+... .+.+..
T Consensus 162 GqrigI~G~sG~GKSTLL~~I~~~~~----~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a~ 237 (444)
T PRK08972 162 GQRMGLFAGSGVGKSVLLGMMTRGTT----ADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKGC 237 (444)
T ss_pred CCEEEEECCCCCChhHHHHHhccCCC----CCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHHH
Confidence 35689999999999999999986432 3566666666544 34556666544322110 011111
Q ss_pred hhHHHHHHHHh-cCCeEEEEEeCCCC
Q 047930 241 GRARSLCNRLK-KEKRILVILDNIWE 265 (395)
Q Consensus 241 ~~~~~l~~~l~-~~kr~LlVlDdv~~ 265 (395)
.....+.+++. +++++||++||+-.
T Consensus 238 ~~A~tiAEyfrd~G~~VLl~~DslTR 263 (444)
T PRK08972 238 ETATTIAEYFRDQGLNVLLLMDSLTR 263 (444)
T ss_pred HHHHHHHHHHHHcCCCEEEEEcChHH
Confidence 11223444442 48999999999843
No 338
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=96.06 E-value=0.0097 Score=50.69 Aligned_cols=38 Identities=26% Similarity=0.349 Sum_probs=29.6
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeC
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVS 214 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s 214 (395)
.++|.|+|+.|+|||||+..+..... ..|...+..+..
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~--~~~~~~v~~TTR 39 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFP--DKFGRVVSHTTR 39 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHST--TTEEEEEEEESS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcc--cccccceeeccc
Confidence 46899999999999999999998765 337555555543
No 339
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=96.06 E-value=0.0046 Score=53.42 Aligned_cols=23 Identities=43% Similarity=0.707 Sum_probs=20.9
Q ss_pred EEEEEecCCCcHHHHHHHHHHHh
Q 047930 177 MLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
+|+|.|++|+|||||++.+....
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998765
No 340
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=96.06 E-value=0.0049 Score=47.46 Aligned_cols=23 Identities=57% Similarity=0.785 Sum_probs=20.1
Q ss_pred EEEEecCCCcHHHHHHHHHHHhc
Q 047930 178 LGIYGMGGIGKTTLAKEVARKAE 200 (395)
Q Consensus 178 i~I~G~~GiGKTtLa~~v~~~~~ 200 (395)
|-|+|++|+|||+||..+..+..
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999887754
No 341
>PRK01184 hypothetical protein; Provisional
Probab=96.05 E-value=0.039 Score=46.91 Aligned_cols=21 Identities=43% Similarity=0.855 Sum_probs=17.8
Q ss_pred eEEEEEecCCCcHHHHHHHHHH
Q 047930 176 NMLGIYGMGGIGKTTLAKEVAR 197 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~ 197 (395)
.+|.|+|+.|+||||+++ +..
T Consensus 2 ~~i~l~G~~GsGKsT~a~-~~~ 22 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK-IAR 22 (184)
T ss_pred cEEEEECCCCCCHHHHHH-HHH
Confidence 478999999999999987 444
No 342
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.04 E-value=0.0057 Score=51.87 Aligned_cols=25 Identities=24% Similarity=0.369 Sum_probs=21.8
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhc
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARKAE 200 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (395)
.+++|+|++|+|||||++.+.....
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3689999999999999999987653
No 343
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=96.04 E-value=0.0071 Score=50.68 Aligned_cols=28 Identities=32% Similarity=0.375 Sum_probs=24.6
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhcc
Q 047930 174 DVNMLGIYGMGGIGKTTLAKEVARKAEN 201 (395)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 201 (395)
...+++|+|..|+|||||++.+......
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~ 32 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCA 32 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhh
Confidence 4678999999999999999999987654
No 344
>PRK08149 ATP synthase SpaL; Validated
Probab=96.03 E-value=0.027 Score=54.15 Aligned_cols=86 Identities=15% Similarity=0.276 Sum_probs=50.8
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCC-cCCHHHHHHHHHHHhCCC--------ccccch-----hh
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQ-IQDIRKIQGEFADKLGLT--------LHEETE-----SG 241 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~~--------~~~~~~-----~~ 241 (395)
..++|.|.+|+|||||+..++.... .+.+++..+.. .....++..+........ .+.... ..
T Consensus 152 q~i~I~G~sG~GKTTLl~~i~~~~~----~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a~~ 227 (428)
T PRK08149 152 QRMGIFASAGCGKTSLMNMLIEHSE----ADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNAAL 227 (428)
T ss_pred CEEEEECCCCCChhHHHHHHhcCCC----CCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhHHH
Confidence 4689999999999999999886543 23434444433 334556666665543211 111110 01
Q ss_pred hHHHHHHHHh-cCCeEEEEEeCCCC
Q 047930 242 RARSLCNRLK-KEKRILVILDNIWE 265 (395)
Q Consensus 242 ~~~~l~~~l~-~~kr~LlVlDdv~~ 265 (395)
....+.+++. +++++||++||+-.
T Consensus 228 ~a~tiAE~fr~~G~~Vll~~DslTr 252 (428)
T PRK08149 228 VATTVAEYFRDQGKRVVLFIDSMTR 252 (428)
T ss_pred HHHHHHHHHHHcCCCEEEEccchHH
Confidence 2223444442 48999999999843
No 345
>PRK00625 shikimate kinase; Provisional
Probab=96.02 E-value=0.0063 Score=51.26 Aligned_cols=24 Identities=25% Similarity=0.429 Sum_probs=21.5
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhc
Q 047930 177 MLGIYGMGGIGKTTLAKEVARKAE 200 (395)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~~ 200 (395)
.|.++|+.|+||||+++.+.+...
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999988754
No 346
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=96.01 E-value=0.0079 Score=50.56 Aligned_cols=43 Identities=26% Similarity=0.273 Sum_probs=31.1
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCC
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQD 218 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~ 218 (395)
..++.+.|+.|+|||.||+.+.+.... +.....+-++.+.-..
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~-~~~~~~~~~d~s~~~~ 45 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFV-GSERPLIRIDMSEYSE 45 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT--SSCCEEEEEEGGGHCS
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhcc-CCccchHHHhhhcccc
Confidence 457889999999999999999988763 1234556666655433
No 347
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=96.01 E-value=0.027 Score=52.03 Aligned_cols=158 Identities=17% Similarity=0.121 Sum_probs=82.0
Q ss_pred chhchHHHHHHHHHHhcCCCceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCc
Q 047930 155 AFESRMSTLNDILDALKNPDVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFADKLGLTL 234 (395)
Q Consensus 155 ~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~ 234 (395)
.|+=..+....++.++..+ +.|.|.|+.|+||||+++.++...... .+.|+++...+..++...-.-.+...
T Consensus 46 ~y~f~~~~~~~vl~~l~~~--~~ilL~G~pGtGKTtla~~lA~~l~~~-----~~rV~~~~~l~~~DliG~~~~~l~~g- 117 (327)
T TIGR01650 46 AYLFDKATTKAICAGFAYD--RRVMVQGYHGTGKSTHIEQIAARLNWP-----CVRVNLDSHVSRIDLVGKDAIVLKDG- 117 (327)
T ss_pred CccCCHHHHHHHHHHHhcC--CcEEEEeCCCChHHHHHHHHHHHHCCC-----eEEEEecCCCChhhcCCCceeeccCC-
Confidence 3433444556677777543 358899999999999999999887532 34566655555444333211001000
Q ss_pred cccchhhhHHHHHHHHhcCCeEEEEEeCCCCc--cc---cchhcc-----ccC------CCCCCcEEEEeecchhhh---
Q 047930 235 HEETESGRARSLCNRLKKEKRILVILDNIWEN--LD---FQAVGI-----PHG------DGHKGSKVLLTARSLDVL--- 295 (395)
Q Consensus 235 ~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~--~~---~~~l~~-----~l~------~~~~gs~iivTtR~~~va--- 295 (395)
.......-..+..... +.+.|++|++... +. +..+.. .++ ..++..++|.|.....-.
T Consensus 118 -~~~~~f~~GpL~~A~~--~g~illlDEin~a~p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~ 194 (327)
T TIGR01650 118 -KQITEFRDGILPWALQ--HNVALCFDEYDAGRPDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTT 194 (327)
T ss_pred -cceeEEecCcchhHHh--CCeEEEechhhccCHHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCC
Confidence 0000000001222222 4578999988643 11 111111 111 123456777777643200
Q ss_pred ----------hhcCCCcc-eeecCCCChHHHHHHHHHhh
Q 047930 296 ----------SRKMDSQQ-NFSFDVLKEDEAWSLFKKMA 323 (395)
Q Consensus 296 ----------~~~~~~~~-~~~l~~L~~~e~~~lf~~~~ 323 (395)
...++... .+.++.++.++=.+++....
T Consensus 195 G~y~Gt~~l~~A~lDRF~i~~~~~Yp~~e~E~~Il~~~~ 233 (327)
T TIGR01650 195 GLYHGTQQINQAQMDRWSIVTTLNYLEHDNEAAIVLAKA 233 (327)
T ss_pred cceeeeecCCHHHHhheeeEeeCCCCCHHHHHHHHHhhc
Confidence 01122232 45788899988888887765
No 348
>PF13245 AAA_19: Part of AAA domain
Probab=96.01 E-value=0.018 Score=41.20 Aligned_cols=25 Identities=24% Similarity=0.260 Sum_probs=17.9
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHH
Q 047930 174 DVNMLGIYGMGGIGKTTLAKEVARK 198 (395)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~ 198 (395)
+.+++.|.|++|+|||+++......
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~ 33 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAE 33 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3457788999999999555544443
No 349
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=96.00 E-value=0.0064 Score=51.41 Aligned_cols=25 Identities=16% Similarity=0.332 Sum_probs=22.2
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhc
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARKAE 200 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (395)
++|.+.|++|+||||+|+.+.....
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~ 27 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLA 27 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhC
Confidence 5799999999999999999987753
No 350
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.00 E-value=0.045 Score=53.24 Aligned_cols=40 Identities=25% Similarity=0.429 Sum_probs=31.2
Q ss_pred HHHHHHHHHhc-----CC--CceEEEEEecCCCcHHHHHHHHHHHhc
Q 047930 161 STLNDILDALK-----NP--DVNMLGIYGMGGIGKTTLAKEVARKAE 200 (395)
Q Consensus 161 ~~~~~l~~~l~-----~~--~~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (395)
..+.++-.||. .+ +.+++.|+|++|+||||.++.+.....
T Consensus 89 kKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskelg 135 (634)
T KOG1970|consen 89 KKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKELG 135 (634)
T ss_pred HhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhhC
Confidence 34566666766 34 346999999999999999999998765
No 351
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=95.98 E-value=0.021 Score=54.39 Aligned_cols=40 Identities=20% Similarity=0.342 Sum_probs=32.4
Q ss_pred HHHHHHHHhcCCCceEEEEEecCCCcHHHHHHHHHHHhcc
Q 047930 162 TLNDILDALKNPDVNMLGIYGMGGIGKTTLAKEVARKAEN 201 (395)
Q Consensus 162 ~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 201 (395)
.++.+++.+...+...+.|.|.||+|||+|.+.+.+..+.
T Consensus 9 ~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~~~ 48 (364)
T PF05970_consen 9 VFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYLRS 48 (364)
T ss_pred HHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHhcc
Confidence 4556666666666778999999999999999999988764
No 352
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=95.98 E-value=0.031 Score=56.18 Aligned_cols=26 Identities=27% Similarity=0.276 Sum_probs=21.9
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHh
Q 047930 174 DVNMLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
.-..++|+|+.|+|||||++.+..-.
T Consensus 360 ~G~~vaIvG~SGsGKSTLl~lL~g~~ 385 (529)
T TIGR02868 360 PGERVAILGPSGSGKSTLLMLLTGLL 385 (529)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34579999999999999999997543
No 353
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=95.98 E-value=0.012 Score=54.94 Aligned_cols=47 Identities=19% Similarity=0.268 Sum_probs=38.7
Q ss_pred ccchhchHHHHHHHHHHhcCCCceEEEEEecCCCcHHHHHHHHHHHh
Q 047930 153 YEAFESRMSTLNDILDALKNPDVNMLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 153 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
...++|.+..+..|+-.+.++...-+.|.|..|+|||||++.+..-.
T Consensus 3 f~~ivgq~~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~~~ 49 (337)
T TIGR02030 3 FTAIVGQDEMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAALL 49 (337)
T ss_pred ccccccHHHHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHHhh
Confidence 34578888888888777777777778899999999999999998654
No 354
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=95.96 E-value=0.0057 Score=52.08 Aligned_cols=23 Identities=48% Similarity=0.628 Sum_probs=21.1
Q ss_pred EEEEEecCCCcHHHHHHHHHHHh
Q 047930 177 MLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
+|+|.|.+|+||||+|+.+....
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58899999999999999999875
No 355
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=95.96 E-value=0.0076 Score=52.81 Aligned_cols=22 Identities=36% Similarity=0.392 Sum_probs=20.1
Q ss_pred eEEEEEecCCCcHHHHHHHHHH
Q 047930 176 NMLGIYGMGGIGKTTLAKEVAR 197 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~ 197 (395)
.++.|.|+.|.||||+.+.+..
T Consensus 31 ~~~~l~Gpn~sGKstllr~i~~ 52 (216)
T cd03284 31 QILLITGPNMAGKSTYLRQVAL 52 (216)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 7899999999999999999864
No 356
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.93 E-value=0.0066 Score=52.00 Aligned_cols=25 Identities=28% Similarity=0.336 Sum_probs=21.4
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHh
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
-.|++|+|++|+|||||.+.+..-.
T Consensus 28 Gevv~iiGpSGSGKSTlLRclN~LE 52 (240)
T COG1126 28 GEVVVIIGPSGSGKSTLLRCLNGLE 52 (240)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCc
Confidence 3589999999999999999987543
No 357
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.92 E-value=0.0055 Score=53.81 Aligned_cols=23 Identities=26% Similarity=0.104 Sum_probs=20.6
Q ss_pred ceEEEEEecCCCcHHHHHHHHHH
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVAR 197 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~ 197 (395)
..++.|.|+.|.||||+.+.+.-
T Consensus 31 g~~~~itG~N~~GKStll~~i~~ 53 (222)
T cd03287 31 GYCQIITGPNMGGKSSYIRQVAL 53 (222)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45788999999999999999876
No 358
>COG4240 Predicted kinase [General function prediction only]
Probab=95.91 E-value=0.053 Score=46.84 Aligned_cols=82 Identities=16% Similarity=0.194 Sum_probs=52.2
Q ss_pred CCCceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHHHHhCC-----CccccchhhhHHHH
Q 047930 172 NPDVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFADKLGL-----TLHEETESGRARSL 246 (395)
Q Consensus 172 ~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~-----~~~~~~~~~~~~~l 246 (395)
.+++-+++|.|+-|+||||++..+++....+.. ..++..++..-+-...-...++++... ..+...+......+
T Consensus 47 ~grPli~gisGpQGSGKStls~~i~~~L~~kg~-ert~~lSLDDlYlthadrl~La~q~npllq~RGlpGTHD~tlglnV 125 (300)
T COG4240 47 RGRPLIVGISGPQGSGKSTLSALIVRLLAAKGL-ERTATLSLDDLYLTHADRLRLARQVNPLLQTRGLPGTHDPTLGLNV 125 (300)
T ss_pred cCCceEEEeecCCCCchhhHHHHHHHHHHHhcc-cceEEeehhhhhcchHHHHHHHHhcCchhcccCCCCCCchHHHHHH
Confidence 456789999999999999999999998775532 356666655544444444455555321 12223344456667
Q ss_pred HHHHhcCC
Q 047930 247 CNRLKKEK 254 (395)
Q Consensus 247 ~~~l~~~k 254 (395)
.+.+.+++
T Consensus 126 Lnai~~g~ 133 (300)
T COG4240 126 LNAIARGG 133 (300)
T ss_pred HHHHhcCC
Confidence 77776554
No 359
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=95.91 E-value=0.037 Score=53.50 Aligned_cols=89 Identities=20% Similarity=0.363 Sum_probs=56.8
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcC-CHHHHHHHHHHHhCCC-------ccccchh------h
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQ-DIRKIQGEFADKLGLT-------LHEETES------G 241 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~-------~~~~~~~------~ 241 (395)
.-++|.|.+|+|||+|+.++....... +-+.++|+-+.... ...++++++...-... ..+.+.. .
T Consensus 139 Qr~~Ifg~~G~GKt~l~~~~~~~~~~~-~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~~~~ 217 (449)
T TIGR03305 139 GKAGLFGGAGVGKTVLLTEMIHNMVGQ-HQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFRVGH 217 (449)
T ss_pred CEEEeecCCCCChhHHHHHHHHHHHhc-CCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHHHHH
Confidence 358899999999999999998775432 34678888886654 4566666665432111 0011111 1
Q ss_pred hHHHHHHHHh--cCCeEEEEEeCCCC
Q 047930 242 RARSLCNRLK--KEKRILVILDNIWE 265 (395)
Q Consensus 242 ~~~~l~~~l~--~~kr~LlVlDdv~~ 265 (395)
..-.+.+++. +++++||++||+-.
T Consensus 218 ~a~tiAEyfrd~~G~~VLl~~DslTR 243 (449)
T TIGR03305 218 TALTMAEYFRDDEKQDVLLLIDNIFR 243 (449)
T ss_pred HHHHHHHHHHHhcCCceEEEecChHH
Confidence 2234556654 47999999999843
No 360
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=95.90 E-value=0.025 Score=51.15 Aligned_cols=51 Identities=22% Similarity=0.281 Sum_probs=39.6
Q ss_pred CCceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHH
Q 047930 173 PDVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFA 227 (395)
Q Consensus 173 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 227 (395)
+.-+++.|.|.+|+|||+++.++....... ...++||+.... ..++.+.+.
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~--ge~vlyvs~~e~--~~~l~~~~~ 71 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYEGARE--GEPVLYVSTEES--PEELLENAR 71 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHHHhc--CCcEEEEEecCC--HHHHHHHHH
Confidence 345789999999999999999999887643 777999998764 445555443
No 361
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=95.89 E-value=0.019 Score=49.84 Aligned_cols=41 Identities=27% Similarity=0.485 Sum_probs=28.2
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCC
Q 047930 177 MLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQD 218 (395)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~ 218 (395)
.|+|+|-||+||||+|..+......++.|+ ++=|....+++
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~~~-VLvVDaDpd~n 42 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGGYN-VLVVDADPDSN 42 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCCce-EEEEeCCCCCC
Confidence 589999999999999999666654443333 34455544443
No 362
>PRK00889 adenylylsulfate kinase; Provisional
Probab=95.88 E-value=0.0096 Score=50.29 Aligned_cols=27 Identities=33% Similarity=0.443 Sum_probs=23.8
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhc
Q 047930 174 DVNMLGIYGMGGIGKTTLAKEVARKAE 200 (395)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (395)
...+|.|+|++|+||||+|+.+.....
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~ 29 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLR 29 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 346899999999999999999998764
No 363
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.88 E-value=0.042 Score=52.87 Aligned_cols=27 Identities=30% Similarity=0.395 Sum_probs=23.6
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhc
Q 047930 174 DVNMLGIYGMGGIGKTTLAKEVARKAE 200 (395)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (395)
.+.+|.++|+.|+||||++..++....
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~ 125 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQ 125 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 468999999999999999999887654
No 364
>PTZ00185 ATPase alpha subunit; Provisional
Probab=95.87 E-value=0.073 Score=51.96 Aligned_cols=90 Identities=17% Similarity=0.157 Sum_probs=51.7
Q ss_pred eEEEEEecCCCcHHHHH-HHHHHHhcc-----cCCCCEEEEEEeCCcCCHHHHHHHHHHHhC-CCc-------cccchhh
Q 047930 176 NMLGIYGMGGIGKTTLA-KEVARKAEN-----EKLFDQVIFVEVSQIQDIRKIQGEFADKLG-LTL-------HEETESG 241 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa-~~v~~~~~~-----~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~-~~~-------~~~~~~~ 241 (395)
.-++|.|..|+|||+|| ..+.+.... .+.-+.++++.+.+..+...-+.+.+++-+ ... ...+...
T Consensus 190 QR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep~~~ 269 (574)
T PTZ00185 190 QRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEPAGL 269 (574)
T ss_pred CEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCCHHH
Confidence 34789999999999996 666666522 123456888888876543332333333332 110 0111110
Q ss_pred ------hHHHHHHHHh-cCCeEEEEEeCCCC
Q 047930 242 ------RARSLCNRLK-KEKRILVILDNIWE 265 (395)
Q Consensus 242 ------~~~~l~~~l~-~~kr~LlVlDdv~~ 265 (395)
..-.+-+++. +++..|||+||+-.
T Consensus 270 r~~Apy~a~tiAEYFrd~GkdVLiv~DDLTr 300 (574)
T PTZ00185 270 QYLAPYSGVTMGEYFMNRGRHCLCVYDDLSK 300 (574)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEEcCchH
Confidence 1123444442 48999999999954
No 365
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=95.87 E-value=0.0069 Score=49.30 Aligned_cols=24 Identities=42% Similarity=0.598 Sum_probs=21.5
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhc
Q 047930 177 MLGIYGMGGIGKTTLAKEVARKAE 200 (395)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~~ 200 (395)
+|.|.|+.|+||||+|+.+.....
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~ 24 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLG 24 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999998754
No 366
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=95.87 E-value=0.0067 Score=49.74 Aligned_cols=23 Identities=30% Similarity=0.634 Sum_probs=20.3
Q ss_pred EEEEEecCCCcHHHHHHHHHHHh
Q 047930 177 MLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
++.++|++|+||||+|+.+....
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 37799999999999999998763
No 367
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=95.86 E-value=0.0067 Score=51.44 Aligned_cols=24 Identities=33% Similarity=0.538 Sum_probs=21.4
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHh
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
++|+|+|+.|+|||||++.+....
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 478999999999999999999753
No 368
>PHA02774 E1; Provisional
Probab=95.85 E-value=0.025 Score=55.86 Aligned_cols=48 Identities=29% Similarity=0.395 Sum_probs=34.2
Q ss_pred HHHHHHHhcC-CCceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeC
Q 047930 163 LNDILDALKN-PDVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVS 214 (395)
Q Consensus 163 ~~~l~~~l~~-~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s 214 (395)
+..|..++.. ++...+.|+|++|+|||.+|..+.+-.. -..+.|++..
T Consensus 421 l~~lk~~l~~~PKknciv~~GPP~TGKS~fa~sL~~~L~----G~vi~fvN~~ 469 (613)
T PHA02774 421 LTALKDFLKGIPKKNCLVIYGPPDTGKSMFCMSLIKFLK----GKVISFVNSK 469 (613)
T ss_pred HHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhC----CCEEEEEECc
Confidence 4555555543 3346899999999999999999998753 2345677653
No 369
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=95.85 E-value=0.029 Score=53.48 Aligned_cols=47 Identities=23% Similarity=0.306 Sum_probs=34.0
Q ss_pred chhchHHHHHHHHHHhcC--------------CCceEEEEEecCCCcHHHHHHHHHHHhcc
Q 047930 155 AFESRMSTLNDILDALKN--------------PDVNMLGIYGMGGIGKTTLAKEVARKAEN 201 (395)
Q Consensus 155 ~~~gr~~~~~~l~~~l~~--------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 201 (395)
.++|.++.++.+...+.. ..++.|.++|++|+|||++|+.+......
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~ 73 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANA 73 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 366776666665444331 12467899999999999999999987653
No 370
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=95.85 E-value=0.038 Score=43.86 Aligned_cols=36 Identities=19% Similarity=0.006 Sum_probs=26.7
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEE
Q 047930 177 MLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVE 212 (395)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~ 212 (395)
.+.|.|+.|+|||+.+...............++|++
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~ 37 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLA 37 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHhcccCCCEEEEc
Confidence 467999999999999998887765433345566664
No 371
>PTZ00088 adenylate kinase 1; Provisional
Probab=95.84 E-value=0.01 Score=52.37 Aligned_cols=24 Identities=29% Similarity=0.609 Sum_probs=21.3
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhc
Q 047930 177 MLGIYGMGGIGKTTLAKEVARKAE 200 (395)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~~ 200 (395)
-|.|.|++|+||||+|+.+.+...
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~g 31 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKEN 31 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 388999999999999999988754
No 372
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=95.84 E-value=0.014 Score=54.48 Aligned_cols=49 Identities=16% Similarity=0.260 Sum_probs=38.0
Q ss_pred ccccchhchHHHHHHHHHHhcCCCceEEEEEecCCCcHHHHHHHHHHHh
Q 047930 151 KDYEAFESRMSTLNDILDALKNPDVNMLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 151 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
.+...++|.+..++.+.-.+.+.+..-+.+.|..|+||||+|+.+..-.
T Consensus 5 ~~f~~i~Gq~~~~~~l~~~~~~~~~~~vLl~G~pG~gKT~lar~la~ll 53 (334)
T PRK13407 5 FPFSAIVGQEEMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAALL 53 (334)
T ss_pred CCHHHhCCHHHHHHHHHHHHhccCCCcEEEEcCCCCCHHHHHHHHHHHC
Confidence 3456688998888877755544555568899999999999999997654
No 373
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=95.83 E-value=0.01 Score=51.70 Aligned_cols=32 Identities=25% Similarity=0.358 Sum_probs=27.4
Q ss_pred HhcCCCceEEEEEecCCCcHHHHHHHHHHHhc
Q 047930 169 ALKNPDVNMLGIYGMGGIGKTTLAKEVARKAE 200 (395)
Q Consensus 169 ~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (395)
.+...++++|+++|+.|+|||||..++.....
T Consensus 16 ~~~~~~~~~i~~~G~~gsGKTTli~~l~~~~~ 47 (207)
T TIGR00073 16 RLDKHGLVVLNFMSSPGSGKTTLIEKLIDNLK 47 (207)
T ss_pred HhhhcCcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34467899999999999999999999988753
No 374
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=95.83 E-value=0.026 Score=54.38 Aligned_cols=46 Identities=22% Similarity=0.172 Sum_probs=32.8
Q ss_pred chhchHHHHHHHHHHhc-------C---------CCceEEEEEecCCCcHHHHHHHHHHHhc
Q 047930 155 AFESRMSTLNDILDALK-------N---------PDVNMLGIYGMGGIGKTTLAKEVARKAE 200 (395)
Q Consensus 155 ~~~gr~~~~~~l~~~l~-------~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (395)
.++|.+..++.+...+. . .....+.++|++|+|||+||+.+.....
T Consensus 72 ~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~ 133 (412)
T PRK05342 72 YVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILD 133 (412)
T ss_pred HeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhC
Confidence 36787777766644331 1 0235688999999999999999987653
No 375
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=95.83 E-value=0.49 Score=43.25 Aligned_cols=68 Identities=15% Similarity=0.103 Sum_probs=44.4
Q ss_pred CCeEEEEEeCCCCc--cccchhccccCCCCCCcEEEEeecc-hhhhhhcCCCcceeecCCCChHHHHHHHHH
Q 047930 253 EKRILVILDNIWEN--LDFQAVGIPHGDGHKGSKVLLTARS-LDVLSRKMDSQQNFSFDVLKEDEAWSLFKK 321 (395)
Q Consensus 253 ~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR~-~~va~~~~~~~~~~~l~~L~~~e~~~lf~~ 321 (395)
+++-++|||+++.. ...+.+...+-...+++.+|++|.+ ..+.....+....+++.+ +.++..+.+..
T Consensus 103 ~~~kV~II~~ad~m~~~AaNaLLKtLEEPp~~t~~iL~t~~~~~lLpTI~SRcq~i~f~~-~~~~~~~~L~~ 173 (290)
T PRK07276 103 GKQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENKVLPTIKSRTQIFHFPK-NEAYLIQLLEQ 173 (290)
T ss_pred CCcEEEEeehhhhcCHHHHHHHHHHhcCCCCCeEEEEEECChhhCchHHHHcceeeeCCC-cHHHHHHHHHH
Confidence 55678999999765 3566666565444455666666655 455555556677888876 66666666653
No 376
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=95.82 E-value=0.093 Score=46.35 Aligned_cols=39 Identities=28% Similarity=0.359 Sum_probs=29.3
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCC
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQ 215 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~ 215 (395)
-.++.|.|.+|+||||++.++......+ -..++|++...
T Consensus 20 G~~~~i~G~~G~GKT~l~~~~~~~~~~~--g~~~~~is~e~ 58 (229)
T TIGR03881 20 GFFVAVTGEPGTGKTIFCLHFAYKGLRD--GDPVIYVTTEE 58 (229)
T ss_pred CeEEEEECCCCCChHHHHHHHHHHHHhc--CCeEEEEEccC
Confidence 4678999999999999999877654322 34678887644
No 377
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=95.81 E-value=0.0072 Score=51.31 Aligned_cols=24 Identities=42% Similarity=0.677 Sum_probs=21.7
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhc
Q 047930 177 MLGIYGMGGIGKTTLAKEVARKAE 200 (395)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~~ 200 (395)
+|+|.|.+|+||||||+.+.....
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~ 24 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLR 24 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999998764
No 378
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=95.80 E-value=0.0088 Score=46.71 Aligned_cols=23 Identities=26% Similarity=0.475 Sum_probs=20.1
Q ss_pred EEEEecCCCcHHHHHHHHHHHhc
Q 047930 178 LGIYGMGGIGKTTLAKEVARKAE 200 (395)
Q Consensus 178 i~I~G~~GiGKTtLa~~v~~~~~ 200 (395)
|.|+|..|+|||||.+.+.....
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~~ 24 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGEF 24 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS-
T ss_pred EEEECcCCCCHHHHHHHHhcCCC
Confidence 67999999999999999997654
No 379
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=95.79 E-value=0.016 Score=47.88 Aligned_cols=34 Identities=24% Similarity=0.487 Sum_probs=28.1
Q ss_pred HHHHHHHhcCCCceEEEEEecCCCcHHHHHHHHHHHh
Q 047930 163 LNDILDALKNPDVNMLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 163 ~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
+++|.+.+.+ ++++++|.+|+|||||+..+....
T Consensus 26 ~~~l~~~l~~---k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 26 IEELKELLKG---KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp HHHHHHHHTT---SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred HHHHHHHhcC---CEEEEECCCCCCHHHHHHHHHhhc
Confidence 5667777754 688999999999999999998754
No 380
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=95.78 E-value=0.03 Score=52.77 Aligned_cols=112 Identities=12% Similarity=0.071 Sum_probs=57.5
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCccccchhhhHHHHHHHHhcC
Q 047930 174 DVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFADKLGLTLHEETESGRARSLCNRLKKE 253 (395)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 253 (395)
....|.|.|+.|+||||+++.+...... +....++. +.++. +-........+...............+...+. .
T Consensus 121 ~~g~ili~G~tGSGKTT~l~al~~~i~~--~~~~~i~t-iEdp~--E~~~~~~~~~i~q~evg~~~~~~~~~l~~~lr-~ 194 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTLASMIDYINK--NAAGHIIT-IEDPI--EYVHRNKRSLINQREVGLDTLSFANALRAALR-E 194 (343)
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHhhCc--CCCCEEEE-EcCCh--hhhccCccceEEccccCCCCcCHHHHHHHhhc-c
Confidence 3478999999999999999998876532 23333332 22221 11100000000000000111122333444454 5
Q ss_pred CeEEEEEeCCCCccccchhccccCCCCCCcEEEEeecchhh
Q 047930 254 KRILVILDNIWENLDFQAVGIPHGDGHKGSKVLLTARSLDV 294 (395)
Q Consensus 254 kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v 294 (395)
.+=.|++|++.+.+.+...... ...|..++.|....+.
T Consensus 195 ~pd~i~vgEird~~~~~~~l~a---a~tGh~v~~T~Ha~~~ 232 (343)
T TIGR01420 195 DPDVILIGEMRDLETVELALTA---AETGHLVFGTLHTNSA 232 (343)
T ss_pred CCCEEEEeCCCCHHHHHHHHHH---HHcCCcEEEEEcCCCH
Confidence 6789999999877665542222 2235556666665443
No 381
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=95.78 E-value=0.047 Score=45.71 Aligned_cols=67 Identities=18% Similarity=0.240 Sum_probs=36.3
Q ss_pred hchHHHHHHHHHHhc---CCCceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHH
Q 047930 157 ESRMSTLNDILDALK---NPDVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFA 227 (395)
Q Consensus 157 ~gr~~~~~~l~~~l~---~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 227 (395)
+|....+.++++.+. ... .-|.|+|..|+||+.+|+.+++..... -...+-|+++.- +.+.+..++.
T Consensus 2 iG~s~~m~~~~~~~~~~a~~~-~pVlI~GE~GtGK~~lA~~IH~~s~r~--~~pfi~vnc~~~-~~~~~e~~LF 71 (168)
T PF00158_consen 2 IGESPAMKRLREQAKRAASSD-LPVLITGETGTGKELLARAIHNNSPRK--NGPFISVNCAAL-PEELLESELF 71 (168)
T ss_dssp S--SHHHHHHHHHHHHHTTST-S-EEEECSTTSSHHHHHHHHHHCSTTT--TS-EEEEETTTS--HHHHHHHHH
T ss_pred EeCCHHHHHHHHHHHHHhCCC-CCEEEEcCCCCcHHHHHHHHHHhhhcc--cCCeEEEehhhh-hcchhhhhhh
Confidence 344445555554443 333 446699999999999999999864321 223344555432 3333333333
No 382
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=95.78 E-value=0.082 Score=49.22 Aligned_cols=48 Identities=25% Similarity=0.405 Sum_probs=36.1
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcC-CHHHHHHHHH
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQ-DIRKIQGEFA 227 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~ 227 (395)
..++|.|..|+|||+|++++.+... -+.++++-+.... .+.+++.++-
T Consensus 158 qr~~I~G~~G~GKT~L~~~Iak~~~----~dvvVyv~iGERg~Ev~e~l~ef~ 206 (369)
T cd01134 158 GTAAIPGPFGCGKTVIQQSLSKYSN----SDIVIYVGCGERGNEMTEVLEEFP 206 (369)
T ss_pred CEEEEECCCCCChHHHHHHHHhCCC----CCEEEEEEeCCChHHHHHHHHHHH
Confidence 4688999999999999999998643 4578888887653 4555666653
No 383
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=95.77 E-value=0.018 Score=45.97 Aligned_cols=27 Identities=26% Similarity=0.220 Sum_probs=23.7
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhcc
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARKAEN 201 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~ 201 (395)
-.+|.+.|.-|+||||+++.+......
T Consensus 22 ~~~i~l~G~lGaGKTtl~~~l~~~lg~ 48 (133)
T TIGR00150 22 GTVVLLKGDLGAGKTTLVQGLLQGLGI 48 (133)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 358999999999999999999987653
No 384
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=95.77 E-value=0.035 Score=46.62 Aligned_cols=47 Identities=19% Similarity=0.307 Sum_probs=30.3
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHHHH
Q 047930 177 MLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFADK 229 (395)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 229 (395)
++.|.|.+|+||||+|..+...... .++++.....+ ..+..+.|...
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~-----~~~~iat~~~~-~~e~~~ri~~h 49 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGL-----QVLYIATAQPF-DDEMAARIAHH 49 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCC-----CcEeCcCCCCC-hHHHHHHHHHH
Confidence 6889999999999999999876432 13444444333 33444555443
No 385
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=95.77 E-value=0.028 Score=52.74 Aligned_cols=64 Identities=20% Similarity=0.193 Sum_probs=45.6
Q ss_pred hhchHHHHHHHHHHhcCCCceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHH
Q 047930 156 FESRMSTLNDILDALKNPDVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEF 226 (395)
Q Consensus 156 ~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 226 (395)
++|+++....+...+..++ .+.+.|++|+|||+||+.+....... ..++.+.......++....
T Consensus 26 ~~g~~~~~~~~l~a~~~~~--~vll~G~PG~gKT~la~~lA~~l~~~-----~~~i~~t~~l~p~d~~G~~ 89 (329)
T COG0714 26 VVGDEEVIELALLALLAGG--HVLLEGPPGVGKTLLARALARALGLP-----FVRIQCTPDLLPSDLLGTY 89 (329)
T ss_pred eeccHHHHHHHHHHHHcCC--CEEEECCCCccHHHHHHHHHHHhCCC-----eEEEecCCCCCHHHhcCch
Confidence 6677777777666665444 37789999999999999999876522 4566676666666654443
No 386
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=95.76 E-value=0.04 Score=46.92 Aligned_cols=25 Identities=28% Similarity=0.410 Sum_probs=22.3
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHh
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
.+.|.|+|++|+||+||+..+....
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~~ 26 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQEI 26 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhcC
Confidence 3578999999999999999998875
No 387
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=95.76 E-value=0.044 Score=50.70 Aligned_cols=37 Identities=27% Similarity=0.485 Sum_probs=28.4
Q ss_pred HHHHHhc--CCCceEEEEEecCCCcHHHHHHHHHHHhcc
Q 047930 165 DILDALK--NPDVNMLGIYGMGGIGKTTLAKEVARKAEN 201 (395)
Q Consensus 165 ~l~~~l~--~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 201 (395)
.+++.+. .....+|+|.|++|+|||||+..+......
T Consensus 22 ~~~~~~~~~~~~~~~i~i~G~~G~GKttl~~~l~~~~~~ 60 (300)
T TIGR00750 22 QLLDRIMPYTGNAHRVGITGTPGAGKSTLLEALGMELRR 60 (300)
T ss_pred HHHHhCCcccCCceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3444443 356789999999999999999999887554
No 388
>PRK00300 gmk guanylate kinase; Provisional
Probab=95.76 E-value=0.0084 Score=52.05 Aligned_cols=25 Identities=28% Similarity=0.425 Sum_probs=22.4
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHh
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
..+|+|+|++|+|||||++.+....
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4679999999999999999999864
No 389
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=95.76 E-value=0.033 Score=56.59 Aligned_cols=75 Identities=19% Similarity=0.174 Sum_probs=48.3
Q ss_pred ccchhchHHHHHHHHHHhcCCCceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHHHHhC
Q 047930 153 YEAFESRMSTLNDILDALKNPDVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFADKLG 231 (395)
Q Consensus 153 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 231 (395)
...++|.++.++.+...+..+. .+.++|+.|+||||+++.+.+..... .|...+++.-+ ..+..++++.++..++
T Consensus 17 ~~~viG~~~a~~~l~~a~~~~~--~~ll~G~pG~GKT~la~~la~~l~~~-~~~~~~~~~n~-~~~~~~~~~~v~~~~g 91 (608)
T TIGR00764 17 IDQVIGQEEAVEIIKKAAKQKR--NVLLIGEPGVGKSMLAKAMAELLPDE-ELEDILVYPNP-EDPNMPRIVEVPAGEG 91 (608)
T ss_pred HhhccCHHHHHHHHHHHHHcCC--CEEEECCCCCCHHHHHHHHHHHcCch-hheeEEEEeCC-CCCchHHHHHHHHhhc
Confidence 4567788887777766665543 56699999999999999999876532 33333333222 2244455666655543
No 390
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=95.75 E-value=0.057 Score=52.34 Aligned_cols=88 Identities=20% Similarity=0.395 Sum_probs=55.1
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcC-CHHHHHHHHHHHhCCC--------ccccchh-----h
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQ-DIRKIQGEFADKLGLT--------LHEETES-----G 241 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~--------~~~~~~~-----~ 241 (395)
.-++|.|.+|+|||||+.++......+. -+.++++-+.... ...++++++...-... .+..... .
T Consensus 145 QR~gIfa~~GvGKt~Ll~~i~~~~~~~~-~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a~~ 223 (463)
T PRK09280 145 GKIGLFGGAGVGKTVLIQELINNIAKEH-GGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRVAL 223 (463)
T ss_pred CEEEeecCCCCChhHHHHHHHHHHHhcC-CCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHH
Confidence 4588999999999999999887765332 2467777776543 4566666666532211 1111111 1
Q ss_pred hHHHHHHHHh--cCCeEEEEEeCCC
Q 047930 242 RARSLCNRLK--KEKRILVILDNIW 264 (395)
Q Consensus 242 ~~~~l~~~l~--~~kr~LlVlDdv~ 264 (395)
....+.+++. +++++||++||+-
T Consensus 224 ~a~tiAEyfrd~~G~~VLll~DslT 248 (463)
T PRK09280 224 TGLTMAEYFRDVEGQDVLLFIDNIF 248 (463)
T ss_pred HHHHHHHHHHHhcCCceEEEecchH
Confidence 1234555552 5899999999984
No 391
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=95.75 E-value=0.054 Score=51.32 Aligned_cols=41 Identities=27% Similarity=0.359 Sum_probs=31.2
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCc
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQI 216 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~ 216 (395)
.++.|.|.+|+|||.||-.++.+..........++++....
T Consensus 2 ~v~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n~~ 42 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCGNHP 42 (352)
T ss_pred eEEEEEecCCcCHHHHHHHHHHHhhccccCCceEEEEecch
Confidence 47899999999999999999998722233555677776554
No 392
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=95.73 E-value=0.0079 Score=48.58 Aligned_cols=22 Identities=32% Similarity=0.528 Sum_probs=20.1
Q ss_pred EEEEecCCCcHHHHHHHHHHHh
Q 047930 178 LGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 178 i~I~G~~GiGKTtLa~~v~~~~ 199 (395)
|+|+|+.|+|||||++.+....
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~ 23 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEF 23 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcC
Confidence 7899999999999999999764
No 393
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=95.73 E-value=0.18 Score=51.87 Aligned_cols=47 Identities=15% Similarity=0.355 Sum_probs=33.1
Q ss_pred ccchhchHHHHHHHHHHhc---CCCceEEEEEecCCCcHHHHHHHHHHHhc
Q 047930 153 YEAFESRMSTLNDILDALK---NPDVNMLGIYGMGGIGKTTLAKEVARKAE 200 (395)
Q Consensus 153 ~~~~~gr~~~~~~l~~~l~---~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (395)
...++|....+.++++.+. .... -|.|+|..|+||+++|+.+.+...
T Consensus 324 ~~~l~g~s~~~~~~~~~~~~~a~~~~-pvli~Ge~GtGK~~~A~~ih~~s~ 373 (638)
T PRK11388 324 FDHMPQDSPQMRRLIHFGRQAAKSSF-PVLLCGEEGVGKALLAQAIHNESE 373 (638)
T ss_pred ccceEECCHHHHHHHHHHHHHhCcCC-CEEEECCCCcCHHHHHHHHHHhCC
Confidence 3446677666666555443 2333 367999999999999999988643
No 394
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=95.73 E-value=0.047 Score=52.66 Aligned_cols=89 Identities=17% Similarity=0.248 Sum_probs=56.3
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhcc------c-----CCCCEEEEEEeCCcCCHHHHHHHHHHHhC-CCc-------cc
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARKAEN------E-----KLFDQVIFVEVSQIQDIRKIQGEFADKLG-LTL-------HE 236 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~------~-----~~f~~~~wv~~s~~~~~~~~~~~i~~~l~-~~~-------~~ 236 (395)
.-++|.|-+|+|||||+.++.+.... + ..-..++++.+.......+.+.+.+..-+ ... .+
T Consensus 142 QRigIfagsGvGKs~L~~~i~~~~~~~~~~~aD~~~~~~~~~v~V~a~IGerre~~efi~~~l~~~g~l~rtvvv~atsd 221 (466)
T TIGR01040 142 QKIPIFSAAGLPHNEIAAQICRQAGLVKLPTKDVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGSMERVCLFLNLAN 221 (466)
T ss_pred CeeeeecCCCCCHHHHHHHHHHhhccccccccccccccCCceEEEEEEeeeehHHHHHHHHHHHhcCCcceEEEEEECCC
Confidence 34889999999999999999877641 0 01115677778777666666666665544 111 01
Q ss_pred cchh------hhHHHHHHHHh--cCCeEEEEEeCCC
Q 047930 237 ETES------GRARSLCNRLK--KEKRILVILDNIW 264 (395)
Q Consensus 237 ~~~~------~~~~~l~~~l~--~~kr~LlVlDdv~ 264 (395)
.+.. ...-.+.+++. +++++||++||+-
T Consensus 222 ~p~~~R~~a~~~a~tiAEyfr~~~G~~VLl~~DslT 257 (466)
T TIGR01040 222 DPTIERIITPRLALTTAEYLAYQCEKHVLVILTDMS 257 (466)
T ss_pred CCHHHHHHHHhhhHHHHHHHHHhcCCcEEEeccChH
Confidence 1111 11224556665 4899999999994
No 395
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=95.73 E-value=0.064 Score=47.80 Aligned_cols=141 Identities=16% Similarity=0.139 Sum_probs=71.9
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhcccC----------CCCEEEEEEeCCcC-CHHHHHHHHHHHhCCCcc----------
Q 047930 177 MLGIYGMGGIGKTTLAKEVARKAENEK----------LFDQVIFVEVSQIQ-DIRKIQGEFADKLGLTLH---------- 235 (395)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~~~~~----------~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~---------- 235 (395)
+-.|+|++|+|||+|+.+++-....-. .-..+++++...+. .+..-+..+...++....
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~~~~i~~Rl~~i~~~~~~~~~~~rl~~~~g~ 82 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDPREEIHRRLEAILQHLEPDDAGDRLFIDSGR 82 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCCHHHHHHHHHHHHhhcCCcCcccceEEeccC
Confidence 457899999999999999987543211 11235666655433 233334444443321100
Q ss_pred -------c---cchhhhHHHHHHHHhcCCeEEEEEeCCCC--------ccccchhccccCC--CCCCcEEEEeecchhhh
Q 047930 236 -------E---ETESGRARSLCNRLKKEKRILVILDNIWE--------NLDFQAVGIPHGD--GHKGSKVLLTARSLDVL 295 (395)
Q Consensus 236 -------~---~~~~~~~~~l~~~l~~~kr~LlVlDdv~~--------~~~~~~l~~~l~~--~~~gs~iivTtR~~~va 295 (395)
. ......+..+.+.+...+.-+||+|-+.. ......+...+.. ...|+.||+++....-.
T Consensus 83 ~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviDpl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~K~~ 162 (239)
T cd01125 83 IQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVIDPLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVRKGS 162 (239)
T ss_pred CCceecccCCcccccHHHHHHHHHHHhcCCCEEEECChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccCccc
Confidence 0 00122344555555435677999996532 1122222222211 22366777777653211
Q ss_pred h-------------hcC-CCcceeecCCCChHHHHH
Q 047930 296 S-------------RKM-DSQQNFSFDVLKEDEAWS 317 (395)
Q Consensus 296 ~-------------~~~-~~~~~~~l~~L~~~e~~~ 317 (395)
. ... .....+.+.+++++++.+
T Consensus 163 ~~~~~~~~~~rGssal~~~~r~~~~l~~~~~~~~~~ 198 (239)
T cd01125 163 AKDGDTQEAARGASALVDGARWVRALTRMTSEEAEK 198 (239)
T ss_pred ccCcccccccCcHHHHhcccceEEEEeeCCHHHHHh
Confidence 0 001 122367777888887776
No 396
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=95.71 E-value=0.017 Score=53.53 Aligned_cols=47 Identities=26% Similarity=0.364 Sum_probs=41.0
Q ss_pred cchhchHHHHHHHHHHhc------CCCceEEEEEecCCCcHHHHHHHHHHHhc
Q 047930 154 EAFESRMSTLNDILDALK------NPDVNMLGIYGMGGIGKTTLAKEVARKAE 200 (395)
Q Consensus 154 ~~~~gr~~~~~~l~~~l~------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (395)
..|+|-++.++++++.+. +..-+++.++|+.|.|||||+..+.+-..
T Consensus 61 ~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le 113 (358)
T PF08298_consen 61 DEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGLE 113 (358)
T ss_pred ccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHhh
Confidence 368899999999999886 45678999999999999999999987764
No 397
>PRK03846 adenylylsulfate kinase; Provisional
Probab=95.71 E-value=0.017 Score=49.83 Aligned_cols=29 Identities=24% Similarity=0.318 Sum_probs=25.1
Q ss_pred CCCceEEEEEecCCCcHHHHHHHHHHHhc
Q 047930 172 NPDVNMLGIYGMGGIGKTTLAKEVARKAE 200 (395)
Q Consensus 172 ~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (395)
.++..+|.|+|++|+||||||+.+.....
T Consensus 21 ~~~~~~i~i~G~~GsGKSTla~~l~~~l~ 49 (198)
T PRK03846 21 GHKGVVLWFTGLSGSGKSTVAGALEEALH 49 (198)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35667999999999999999999998654
No 398
>PRK14529 adenylate kinase; Provisional
Probab=95.70 E-value=0.043 Score=48.15 Aligned_cols=83 Identities=18% Similarity=0.199 Sum_probs=46.1
Q ss_pred EEEEecCCCcHHHHHHHHHHHhcccCCCCE--EEEEEeCCcCCHHHHHHHHHHHhCCCccccchhhhHHHHHHHHhcCCe
Q 047930 178 LGIYGMGGIGKTTLAKEVARKAENEKLFDQ--VIFVEVSQIQDIRKIQGEFADKLGLTLHEETESGRARSLCNRLKKEKR 255 (395)
Q Consensus 178 i~I~G~~GiGKTtLa~~v~~~~~~~~~f~~--~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr 255 (395)
|.|.|++|+||||+++.+....... +.+. .+.-.+..........++++.+-. -.++.-....+.+++.+...
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~~~-~is~gdllr~~i~~~t~lg~~i~~~i~~G~----lvpdei~~~lv~~~l~~~~~ 77 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYDLA-HIESGAIFREHIGGGTELGKKAKEYIDRGD----LVPDDITIPMILETLKQDGK 77 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCC-CcccchhhhhhccCCChHHHHHHHHHhccC----cchHHHHHHHHHHHHhccCC
Confidence 7889999999999999999876532 2221 111122222233333444443321 12233344556666653224
Q ss_pred EEEEEeCCCC
Q 047930 256 ILVILDNIWE 265 (395)
Q Consensus 256 ~LlVlDdv~~ 265 (395)
-=+|||+.-.
T Consensus 78 ~g~iLDGfPR 87 (223)
T PRK14529 78 NGWLLDGFPR 87 (223)
T ss_pred CcEEEeCCCC
Confidence 4589999843
No 399
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=95.69 E-value=0.011 Score=48.79 Aligned_cols=29 Identities=38% Similarity=0.593 Sum_probs=25.7
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhcccC
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARKAENEK 203 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~ 203 (395)
.++++|+|..|+|||||...+....+.+.
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L~~~G 30 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKLKARG 30 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHHHHhCC
Confidence 46899999999999999999999887654
No 400
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.69 E-value=0.082 Score=47.82 Aligned_cols=89 Identities=16% Similarity=0.290 Sum_probs=47.9
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcC-CHHHHHHHHHHHhCCCccccchhhhHHHHHHHHhc
Q 047930 174 DVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQ-DIRKIQGEFADKLGLTLHEETESGRARSLCNRLKK 252 (395)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 252 (395)
+..++.++|..|+||||++..+......+. ..+.+++..... ....-+....+.++.+.....+...+....+.+..
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~--~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~ 151 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKK--KTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKE 151 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcC--CeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHh
Confidence 446899999999999999999877654321 235555553221 12222333444444332221222223333444432
Q ss_pred -CCeEEEEEeCCC
Q 047930 253 -EKRILVILDNIW 264 (395)
Q Consensus 253 -~kr~LlVlDdv~ 264 (395)
.+.=++++|..-
T Consensus 152 ~~~~D~ViIDt~G 164 (270)
T PRK06731 152 EARVDYILIDTAG 164 (270)
T ss_pred cCCCCEEEEECCC
Confidence 234578888773
No 401
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.69 E-value=0.036 Score=45.84 Aligned_cols=111 Identities=16% Similarity=0.256 Sum_probs=56.6
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcC--CHHHHHHHHHHHhCCCccccch-hhhHHHHHHHHhc
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQ--DIRKIQGEFADKLGLTLHEETE-SGRARSLCNRLKK 252 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~--~~~~~~~~i~~~l~~~~~~~~~-~~~~~~l~~~l~~ 252 (395)
.+++|+|..|.|||||++.+..... .....+++.-.... .... ....++.-.. .+. ....-.+...+.
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~~---~~~G~i~~~~~~~~~~~~~~----~~~~i~~~~q-lS~G~~~r~~l~~~l~- 96 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLLK---PTSGEILIDGKDIAKLPLEE----LRRRIGYVPQ-LSGGQRQRVALARALL- 96 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC---CCccEEEECCEEcccCCHHH----HHhceEEEee-CCHHHHHHHHHHHHHh-
Confidence 5789999999999999999987543 23444544322111 1111 1111111000 111 112223444444
Q ss_pred CCeEEEEEeCCCCcc---ccchhccccCC-CCCCcEEEEeecchhhh
Q 047930 253 EKRILVILDNIWENL---DFQAVGIPHGD-GHKGSKVLLTARSLDVL 295 (395)
Q Consensus 253 ~kr~LlVlDdv~~~~---~~~~l~~~l~~-~~~gs~iivTtR~~~va 295 (395)
..+-++++|+..... ....+...+.. ...+..+|++|.+....
T Consensus 97 ~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~ 143 (157)
T cd00267 97 LNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELA 143 (157)
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 457899999985432 22222222211 11246688888876554
No 402
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=95.69 E-value=0.034 Score=57.21 Aligned_cols=23 Identities=35% Similarity=0.426 Sum_probs=20.5
Q ss_pred eEEEEEecCCCcHHHHHHHHHHH
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARK 198 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~ 198 (395)
..|+|+|.+|+|||||++.+..-
T Consensus 500 e~vaIvG~SGsGKSTL~KLL~gl 522 (709)
T COG2274 500 EKVAIVGRSGSGKSTLLKLLLGL 522 (709)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 46999999999999999998754
No 403
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=95.68 E-value=0.055 Score=48.47 Aligned_cols=24 Identities=21% Similarity=0.412 Sum_probs=21.5
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhc
Q 047930 177 MLGIYGMGGIGKTTLAKEVARKAE 200 (395)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~~ 200 (395)
+|+|.|.+|+||||+++.+.....
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~ 24 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFA 24 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999987754
No 404
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=95.68 E-value=0.0089 Score=51.08 Aligned_cols=24 Identities=21% Similarity=0.466 Sum_probs=21.1
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHh
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
.++.|+|+.|+|||||++.+....
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 368899999999999999997654
No 405
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=95.68 E-value=0.013 Score=51.11 Aligned_cols=23 Identities=48% Similarity=0.650 Sum_probs=20.6
Q ss_pred eEEEEEecCCCcHHHHHHHHHHH
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARK 198 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~ 198 (395)
.+++|+|.+|+|||||++.+.--
T Consensus 34 e~lgivGeSGsGKSTL~r~l~Gl 56 (252)
T COG1124 34 ETLGIVGESGSGKSTLARLLAGL 56 (252)
T ss_pred CEEEEEcCCCCCHHHHHHHHhcc
Confidence 47999999999999999998754
No 406
>PRK14737 gmk guanylate kinase; Provisional
Probab=95.67 E-value=0.011 Score=50.58 Aligned_cols=26 Identities=19% Similarity=0.324 Sum_probs=22.9
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHh
Q 047930 174 DVNMLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
...+|.|+|++|+|||||++.+....
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 45789999999999999999998754
No 407
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.67 E-value=0.0094 Score=52.30 Aligned_cols=22 Identities=36% Similarity=0.605 Sum_probs=20.1
Q ss_pred eEEEEEecCCCcHHHHHHHHHH
Q 047930 176 NMLGIYGMGGIGKTTLAKEVAR 197 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~ 197 (395)
-.++|+|++|+|||||.+.+.-
T Consensus 30 EfvsilGpSGcGKSTLLriiAG 51 (248)
T COG1116 30 EFVAILGPSGCGKSTLLRLIAG 51 (248)
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4799999999999999999874
No 408
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.66 E-value=0.085 Score=46.65 Aligned_cols=92 Identities=18% Similarity=0.319 Sum_probs=54.1
Q ss_pred cchhchHHHHHHHHHHhc-------------CCCceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHH
Q 047930 154 EAFESRMSTLNDILDALK-------------NPDVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIR 220 (395)
Q Consensus 154 ~~~~gr~~~~~~l~~~l~-------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~ 220 (395)
.++-|=.+.+++|.+... -..++-|.++|++|+|||-+|+.++|.-.. .| +.+-. .
T Consensus 177 ~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtda--cf-----irvig----s 245 (435)
T KOG0729|consen 177 SDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDA--CF-----IRVIG----S 245 (435)
T ss_pred ccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCc--eE-----Eeehh----H
Confidence 344444556666555432 124566889999999999999999986542 23 22211 1
Q ss_pred HHHHHHHHHhCCCccccchhhhHHHHHHHHhcCCeEEEEEeCCCC
Q 047930 221 KIQGEFADKLGLTLHEETESGRARSLCNRLKKEKRILVILDNIWE 265 (395)
Q Consensus 221 ~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~ 265 (395)
++.++.. + ........+.+-....|-|+|+||+++.
T Consensus 246 elvqkyv---g------egarmvrelf~martkkaciiffdeida 281 (435)
T KOG0729|consen 246 ELVQKYV---G------EGARMVRELFEMARTKKACIIFFDEIDA 281 (435)
T ss_pred HHHHHHh---h------hhHHHHHHHHHHhcccceEEEEeecccc
Confidence 2222211 1 1122345555555567889999998853
No 409
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=95.66 E-value=0.046 Score=53.11 Aligned_cols=90 Identities=21% Similarity=0.276 Sum_probs=55.7
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhcccCCC--CEEEEEEeCCcC-CHHHHHHHHHHHhCCCc-------cccchh-----
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARKAENEKLF--DQVIFVEVSQIQ-DIRKIQGEFADKLGLTL-------HEETES----- 240 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f--~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~-------~~~~~~----- 240 (395)
.-++|.|..|+|||||+.++.+....++.+ ..++++.+.+.. ...+++..+...-.... .+.+..
T Consensus 142 QR~gIfgg~G~GKs~L~~~ia~~~~ad~~~~~~v~V~~~iGERgrEv~efi~~~~~~~~l~rtvvv~atsd~p~~~R~~a 221 (458)
T TIGR01041 142 QKLPIFSGSGLPHNELAAQIARQATVRGEESEFAVVFAAMGITYEEANFFMKDFEETGALERAVVFLNLADDPAVERIVT 221 (458)
T ss_pred CEEEeeCCCCCCHHHHHHHHHHhhcccCCCCceEEEEEEccccchHHHHHHHHHHhcCCcceEEEEEECCCCCHHHHHHH
Confidence 348899999999999999999876432111 156777776543 45666666654322110 011111
Q ss_pred -hhHHHHHHHHh--cCCeEEEEEeCCCC
Q 047930 241 -GRARSLCNRLK--KEKRILVILDNIWE 265 (395)
Q Consensus 241 -~~~~~l~~~l~--~~kr~LlVlDdv~~ 265 (395)
.....+.+++. +++++||++||+-.
T Consensus 222 ~~~a~tiAEyfr~d~G~~VLli~DslTR 249 (458)
T TIGR01041 222 PRMALTAAEYLAFEKDMHVLVILTDMTN 249 (458)
T ss_pred HHHHHHHHHHHHHccCCcEEEEEcChhH
Confidence 12234566665 58999999999843
No 410
>PRK13947 shikimate kinase; Provisional
Probab=95.65 E-value=0.01 Score=49.87 Aligned_cols=24 Identities=38% Similarity=0.494 Sum_probs=21.7
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhc
Q 047930 177 MLGIYGMGGIGKTTLAKEVARKAE 200 (395)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~~ 200 (395)
.|.|+|++|+||||+++.+.+...
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg 26 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLS 26 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999998764
No 411
>PRK06936 type III secretion system ATPase; Provisional
Probab=95.64 E-value=0.062 Score=51.79 Aligned_cols=87 Identities=23% Similarity=0.395 Sum_probs=53.0
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcC-CHHHHHHHHHHHhCCCc-------cccchhh-----
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQ-DIRKIQGEFADKLGLTL-------HEETESG----- 241 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~-------~~~~~~~----- 241 (395)
-..++|.|..|+|||||.+.+++... .+.++++-+.... ...++....+..-+... .+.+...
T Consensus 162 Gq~~~I~G~sG~GKStLl~~Ia~~~~----~dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~a~ 237 (439)
T PRK06936 162 GQRMGIFAAAGGGKSTLLASLIRSAE----VDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAKAG 237 (439)
T ss_pred CCEEEEECCCCCChHHHHHHHhcCCC----CCEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHHHHH
Confidence 45689999999999999999998654 3567777776553 34554444333211110 0111111
Q ss_pred -hHHHHHHHHh-cCCeEEEEEeCCCC
Q 047930 242 -RARSLCNRLK-KEKRILVILDNIWE 265 (395)
Q Consensus 242 -~~~~l~~~l~-~~kr~LlVlDdv~~ 265 (395)
....+.+++. +++++||++||+-.
T Consensus 238 ~~a~tiAEyfrd~G~~Vll~~DslTR 263 (439)
T PRK06936 238 FVATSIAEYFRDQGKRVLLLMDSVTR 263 (439)
T ss_pred HHHHHHHHHHHHcCCCEEEeccchhH
Confidence 1223445552 58999999999943
No 412
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=95.64 E-value=0.042 Score=47.56 Aligned_cols=27 Identities=19% Similarity=0.347 Sum_probs=22.9
Q ss_pred CCceEEEEEecCCCcHHHHHHHHHHHh
Q 047930 173 PDVNMLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 173 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
+....|+|+|.+|+|||||...+....
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~ 65 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGAD 65 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcch
Confidence 345679999999999999999988763
No 413
>PRK12678 transcription termination factor Rho; Provisional
Probab=95.64 E-value=0.048 Score=53.85 Aligned_cols=88 Identities=20% Similarity=0.209 Sum_probs=47.9
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhcccCCCCEE-EEEEeCCcCC-HHHHHHHHHHHh-CCCccccchh-----hhHHHHH
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARKAENEKLFDQV-IFVEVSQIQD-IRKIQGEFADKL-GLTLHEETES-----GRARSLC 247 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~-~wv~~s~~~~-~~~~~~~i~~~l-~~~~~~~~~~-----~~~~~l~ 247 (395)
.-..|+|++|+|||||++.+.+..... +-++. +.+-+..... +.++.+.+-..+ ....+..... .....+.
T Consensus 417 QR~LIvgpp~aGKTtLL~~IAn~i~~n-~~~~~~ivvLIgERpeEVtdm~rsVkgeVVasT~D~p~~~~~~~a~~ai~~A 495 (672)
T PRK12678 417 QRGLIVSPPKAGKTTILQNIANAITTN-NPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDHTTVAELAIERA 495 (672)
T ss_pred CEeEEeCCCCCCHHHHHHHHHHHHhhc-CCCeEEEEEEEeCchhhHHHHHHhccceEEEECCCCCHHHHHHHHHHHHHHH
Confidence 347799999999999999999866432 23443 3445554432 233322221111 1111111111 1222344
Q ss_pred HHH-hcCCeEEEEEeCCC
Q 047930 248 NRL-KKEKRILVILDNIW 264 (395)
Q Consensus 248 ~~l-~~~kr~LlVlDdv~ 264 (395)
+++ ..++.+||++|++-
T Consensus 496 e~fre~G~dVlillDSlT 513 (672)
T PRK12678 496 KRLVELGKDVVVLLDSIT 513 (672)
T ss_pred HHHHHcCCCEEEEEeCch
Confidence 444 25899999999984
No 414
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=95.64 E-value=0.0084 Score=49.96 Aligned_cols=22 Identities=32% Similarity=0.610 Sum_probs=19.7
Q ss_pred EEEEecCCCcHHHHHHHHHHHh
Q 047930 178 LGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 178 i~I~G~~GiGKTtLa~~v~~~~ 199 (395)
|.|+|++|+||||+|+.+....
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999765
No 415
>PRK05922 type III secretion system ATPase; Validated
Probab=95.63 E-value=0.067 Score=51.54 Aligned_cols=86 Identities=15% Similarity=0.334 Sum_probs=50.0
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCC-cCCHHHHHHHHHHHhCCCcc----ccchh---------h
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQ-IQDIRKIQGEFADKLGLTLH----EETES---------G 241 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~----~~~~~---------~ 241 (395)
..++|.|..|+|||||.+.+..... .+...++.++. .....+.+.+.......... ..++. .
T Consensus 158 qrigI~G~nG~GKSTLL~~Ia~~~~----~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~a~~ 233 (434)
T PRK05922 158 QRIGVFSEPGSGKSSLLSTIAKGSK----STINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVIAGR 233 (434)
T ss_pred cEEEEECCCCCChHHHHHHHhccCC----CCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHHHHH
Confidence 4589999999999999999986543 23334433333 23345555555443322110 00111 1
Q ss_pred hHHHHHHHHh-cCCeEEEEEeCCCC
Q 047930 242 RARSLCNRLK-KEKRILVILDNIWE 265 (395)
Q Consensus 242 ~~~~l~~~l~-~~kr~LlVlDdv~~ 265 (395)
....+.+++. +++++||++||+-.
T Consensus 234 ~a~tiAEyfrd~G~~VLl~~DslTR 258 (434)
T PRK05922 234 AAMTIAEYFRDQGHRVLFIMDSLSR 258 (434)
T ss_pred HHHHHHHHHHHcCCCEEEeccchhH
Confidence 1224555553 58999999999943
No 416
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=95.63 E-value=0.052 Score=52.20 Aligned_cols=87 Identities=23% Similarity=0.343 Sum_probs=48.8
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCC--------ccccchh-----hh
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFADKLGLT--------LHEETES-----GR 242 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~--------~~~~~~~-----~~ 242 (395)
..++|.|..|+|||||++.+...... ...++...-.......++.++.+..-+.. .++.... ..
T Consensus 141 q~i~I~G~sG~GKTtLl~~I~~~~~~---~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a~~~ 217 (418)
T TIGR03498 141 QRLGIFAGSGVGKSTLLSMLARNTDA---DVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQAAYT 217 (418)
T ss_pred cEEEEECCCCCChHHHHHHHhCCCCC---CEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHHHHH
Confidence 56899999999999999988865432 22233222222334555555544432211 1111111 11
Q ss_pred HHHHHHHHh-cCCeEEEEEeCCCC
Q 047930 243 ARSLCNRLK-KEKRILVILDNIWE 265 (395)
Q Consensus 243 ~~~l~~~l~-~~kr~LlVlDdv~~ 265 (395)
...+.+++. ++++.||++||+-.
T Consensus 218 a~~iAEyfrd~G~~Vll~~DslTr 241 (418)
T TIGR03498 218 ATAIAEYFRDQGKDVLLLMDSVTR 241 (418)
T ss_pred HHHHHHHHHHcCCCEEEeccchhH
Confidence 223455553 48899999999843
No 417
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=95.62 E-value=0.011 Score=45.08 Aligned_cols=21 Identities=48% Similarity=0.469 Sum_probs=19.4
Q ss_pred eEEEEEecCCCcHHHHHHHHH
Q 047930 176 NMLGIYGMGGIGKTTLAKEVA 196 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~ 196 (395)
..++|.|++|+|||||++.+.
T Consensus 16 e~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 16 VGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEEcCCCCCHHHHHHHhh
Confidence 578999999999999999976
No 418
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=95.60 E-value=2.3 Score=40.77 Aligned_cols=58 Identities=21% Similarity=0.307 Sum_probs=38.7
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeC-CcCCHHHHHHHHHHHhCCC
Q 047930 174 DVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVS-QIQDIRKIQGEFADKLGLT 233 (395)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s-~~~~~~~~~~~i~~~l~~~ 233 (395)
.+.+|-.+|.-|.||||.+..+++..+.+. +. +.-|++. ..+...+-++.+.++++.+
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lkk~~-~k-vllVaaD~~RpAA~eQL~~La~q~~v~ 157 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLKKKG-KK-VLLVAADTYRPAAIEQLKQLAEQVGVP 157 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHHHcC-Cc-eEEEecccCChHHHHHHHHHHHHcCCc
Confidence 468899999999999999999988876532 22 2333322 2234455667777776543
No 419
>PRK15453 phosphoribulokinase; Provisional
Probab=95.59 E-value=0.089 Score=47.53 Aligned_cols=28 Identities=18% Similarity=0.369 Sum_probs=23.9
Q ss_pred CCceEEEEEecCCCcHHHHHHHHHHHhc
Q 047930 173 PDVNMLGIYGMGGIGKTTLAKEVARKAE 200 (395)
Q Consensus 173 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (395)
.+..+|+|.|.+|+||||+++.+.+...
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~if~ 30 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKIFR 30 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3567999999999999999999986553
No 420
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=95.57 E-value=0.075 Score=45.15 Aligned_cols=119 Identities=20% Similarity=0.129 Sum_probs=63.5
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEE-EEEEeCCcCCHHHHHHHHH--HH--hCCC--ccc-cc--hhh--
Q 047930 174 DVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQV-IFVEVSQIQDIRKIQGEFA--DK--LGLT--LHE-ET--ESG-- 241 (395)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~-~wv~~s~~~~~~~~~~~i~--~~--l~~~--~~~-~~--~~~-- 241 (395)
....|.|+|..|-||||.|.-+.-.......--.+ =|+--.........+..+- .. .+.. ... .. +..
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~~~ 100 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRERDIAAA 100 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHHHHH
Confidence 34678999999999999999988776543221111 1222222334444444321 00 0110 000 11 111
Q ss_pred --hHHHHHHHHhcCCeEEEEEeCCCCc-----cccchhccccCCCCCCcEEEEeecch
Q 047930 242 --RARSLCNRLKKEKRILVILDNIWEN-----LDFQAVGIPHGDGHKGSKVLLTARSL 292 (395)
Q Consensus 242 --~~~~l~~~l~~~kr~LlVlDdv~~~-----~~~~~l~~~l~~~~~gs~iivTtR~~ 292 (395)
......+.+..++-=|||||++-.. ...+++...+.....+.-||+|-|+.
T Consensus 101 ~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~ 158 (191)
T PRK05986 101 REGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGA 158 (191)
T ss_pred HHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCC
Confidence 1233444444444459999998543 23344544554455677899999984
No 421
>PRK13949 shikimate kinase; Provisional
Probab=95.55 E-value=0.012 Score=49.51 Aligned_cols=24 Identities=42% Similarity=0.513 Sum_probs=21.7
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhc
Q 047930 177 MLGIYGMGGIGKTTLAKEVARKAE 200 (395)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~~ 200 (395)
-|.|+|+.|+||||+++.+.....
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 488999999999999999998764
No 422
>PRK09099 type III secretion system ATPase; Provisional
Probab=95.55 E-value=0.045 Score=52.90 Aligned_cols=89 Identities=19% Similarity=0.336 Sum_probs=51.3
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCc-------cccchh------
Q 047930 174 DVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFADKLGLTL-------HEETES------ 240 (395)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~-------~~~~~~------ 240 (395)
+-..++|.|..|+|||||++.+....... .+++...-.......++.+.+...-+... .+.+..
T Consensus 162 ~Gq~~~I~G~sG~GKTtLl~~ia~~~~~d---~~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~~a~ 238 (441)
T PRK09099 162 EGQRMGIFAPAGVGKSTLMGMFARGTQCD---VNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAKAA 238 (441)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCC---eEEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHHHHH
Confidence 34578999999999999999998654321 23433333334455565565554322110 001111
Q ss_pred hhHHHHHHHHh-cCCeEEEEEeCCCC
Q 047930 241 GRARSLCNRLK-KEKRILVILDNIWE 265 (395)
Q Consensus 241 ~~~~~l~~~l~-~~kr~LlVlDdv~~ 265 (395)
.....+.+++. +++++||++||+-.
T Consensus 239 ~~a~tiAEyfrd~G~~VLl~~DslTr 264 (441)
T PRK09099 239 YVATAIAEYFRDRGLRVLLMMDSLTR 264 (441)
T ss_pred HHHHHHHHHHHHcCCCEEEeccchhH
Confidence 11223444543 58899999999843
No 423
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=95.54 E-value=0.012 Score=48.39 Aligned_cols=23 Identities=35% Similarity=0.527 Sum_probs=20.7
Q ss_pred EEEEecCCCcHHHHHHHHHHHhc
Q 047930 178 LGIYGMGGIGKTTLAKEVARKAE 200 (395)
Q Consensus 178 i~I~G~~GiGKTtLa~~v~~~~~ 200 (395)
|.|+|++|+||||+|+.+.....
T Consensus 2 i~l~G~~GsGKstla~~la~~l~ 24 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALG 24 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhC
Confidence 78999999999999999987754
No 424
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=95.54 E-value=0.0068 Score=52.56 Aligned_cols=23 Identities=26% Similarity=0.261 Sum_probs=20.8
Q ss_pred eEEEEEecCCCcHHHHHHHHHHH
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARK 198 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~ 198 (395)
.+++|+|+.|.||||+.+.+...
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~~ 52 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGLA 52 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHHH
Confidence 68999999999999999999843
No 425
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=95.53 E-value=0.054 Score=47.20 Aligned_cols=23 Identities=43% Similarity=0.473 Sum_probs=20.2
Q ss_pred EEEEecCCCcHHHHHHHHHHHhc
Q 047930 178 LGIYGMGGIGKTTLAKEVARKAE 200 (395)
Q Consensus 178 i~I~G~~GiGKTtLa~~v~~~~~ 200 (395)
|.|.|++|+||||+|+.+.....
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g 24 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYG 24 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 67899999999999999987643
No 426
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.53 E-value=0.12 Score=46.91 Aligned_cols=51 Identities=16% Similarity=0.182 Sum_probs=35.6
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHHHH
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFADK 229 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 229 (395)
.++.|.|.+|+||||++.++......+ +-..++|++... +..++...+...
T Consensus 31 ~~~~i~g~~G~GKT~l~~~~~~~~~~~-~g~~vl~iS~E~--~~~~~~~r~~~~ 81 (271)
T cd01122 31 ELIILTAGTGVGKTTFLREYALDLITQ-HGVRVGTISLEE--PVVRTARRLLGQ 81 (271)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHHh-cCceEEEEEccc--CHHHHHHHHHHH
Confidence 478899999999999999988765432 123578887755 345565555443
No 427
>PRK04182 cytidylate kinase; Provisional
Probab=95.53 E-value=0.029 Score=47.38 Aligned_cols=24 Identities=42% Similarity=0.534 Sum_probs=21.8
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhc
Q 047930 177 MLGIYGMGGIGKTTLAKEVARKAE 200 (395)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~~ 200 (395)
+|.|.|+.|+||||+++.+.+...
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg 25 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 689999999999999999998754
No 428
>PRK14530 adenylate kinase; Provisional
Probab=95.52 E-value=0.012 Score=51.45 Aligned_cols=24 Identities=25% Similarity=0.335 Sum_probs=21.4
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhc
Q 047930 177 MLGIYGMGGIGKTTLAKEVARKAE 200 (395)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~~ 200 (395)
.|.|+|++|+||||+++.+.....
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~ 28 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFG 28 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999987653
No 429
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=95.52 E-value=0.082 Score=49.09 Aligned_cols=86 Identities=22% Similarity=0.360 Sum_probs=50.0
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeC-CcCCHHHHHHHHHHHhCCC--------ccccchh-----h
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVS-QIQDIRKIQGEFADKLGLT--------LHEETES-----G 241 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s-~~~~~~~~~~~i~~~l~~~--------~~~~~~~-----~ 241 (395)
..++|.|..|+|||||++.+..... .+..+...+. ......++.......-+.. .++.... .
T Consensus 70 qri~I~G~sG~GKTtLl~~Ia~~~~----~~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~~~ 145 (326)
T cd01136 70 QRLGIFAGSGVGKSTLLGMIARGTT----ADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKAAY 145 (326)
T ss_pred cEEEEECCCCCChHHHHHHHhCCCC----CCEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHHHHH
Confidence 5689999999999999998887543 2333444443 3345556555555442211 1111111 1
Q ss_pred hHHHHHHHHh-cCCeEEEEEeCCCC
Q 047930 242 RARSLCNRLK-KEKRILVILDNIWE 265 (395)
Q Consensus 242 ~~~~l~~~l~-~~kr~LlVlDdv~~ 265 (395)
..-.+.+++. +++.+||++||+-.
T Consensus 146 ~a~~~AEyfr~~g~~Vll~~Dsltr 170 (326)
T cd01136 146 TATAIAEYFRDQGKDVLLLMDSLTR 170 (326)
T ss_pred HHHHHHHHHHHcCCCeEEEeccchH
Confidence 1223444442 48899999999843
No 430
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=95.51 E-value=0.055 Score=48.73 Aligned_cols=94 Identities=14% Similarity=0.242 Sum_probs=53.5
Q ss_pred eEEEEEecCCCcHHHHH-HHHHHHhcccCCCCE-EEEEEeCCcC-CHHHHHHHHHHHhCCC--------ccccchhh---
Q 047930 176 NMLGIYGMGGIGKTTLA-KEVARKAENEKLFDQ-VIFVEVSQIQ-DIRKIQGEFADKLGLT--------LHEETESG--- 241 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa-~~v~~~~~~~~~f~~-~~wv~~s~~~-~~~~~~~~i~~~l~~~--------~~~~~~~~--- 241 (395)
.-++|.|..|+|||+|+ ..+.+... -+. ++++-+.... ...++.+++...-... .++.....
T Consensus 70 Qr~~Ifg~~g~GKt~L~l~~i~~~~~----~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~a 145 (274)
T cd01132 70 QRELIIGDRQTGKTAIAIDTIINQKG----KKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQYLA 145 (274)
T ss_pred CEEEeeCCCCCCccHHHHHHHHHhcC----CCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHHHH
Confidence 34889999999999995 55655432 233 4677776553 4566666665432111 11111110
Q ss_pred --hHHHHHHHHh-cCCeEEEEEeCCCCc-cccchhc
Q 047930 242 --RARSLCNRLK-KEKRILVILDNIWEN-LDFQAVG 273 (395)
Q Consensus 242 --~~~~l~~~l~-~~kr~LlVlDdv~~~-~~~~~l~ 273 (395)
..-.+.+++. +++..||++||+-.. ..+.++.
T Consensus 146 ~~~a~aiAE~fr~~G~~Vlvl~DslTr~A~A~rEis 181 (274)
T cd01132 146 PYTGCAMGEYFMDNGKHALIIYDDLSKQAVAYRQMS 181 (274)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEcChHHHHHHHHHHH
Confidence 1223344443 478999999999543 3455543
No 431
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=95.51 E-value=0.014 Score=49.19 Aligned_cols=26 Identities=23% Similarity=0.393 Sum_probs=22.5
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhc
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARKAE 200 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (395)
...|.|+|+.|+||||+++.+.....
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~ 29 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLN 29 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcC
Confidence 34689999999999999999998753
No 432
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=95.51 E-value=0.027 Score=52.07 Aligned_cols=42 Identities=26% Similarity=0.423 Sum_probs=28.1
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCH
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDI 219 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~ 219 (395)
+++.+.|.||+||||+|...+-....++ ..++-++.....++
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~~G--~rtLlvS~Dpa~~L 43 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALARRG--KRTLLVSTDPAHSL 43 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTT--S-EEEEESSTTTHH
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhhCC--CCeeEeecCCCccH
Confidence 5789999999999999988877654432 22444454443333
No 433
>PRK14738 gmk guanylate kinase; Provisional
Probab=95.50 E-value=0.013 Score=50.93 Aligned_cols=26 Identities=19% Similarity=0.370 Sum_probs=22.4
Q ss_pred CCceEEEEEecCCCcHHHHHHHHHHH
Q 047930 173 PDVNMLGIYGMGGIGKTTLAKEVARK 198 (395)
Q Consensus 173 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 198 (395)
...+.|.|+|++|+|||||++.+...
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 35678999999999999999999754
No 434
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=95.50 E-value=0.013 Score=49.16 Aligned_cols=23 Identities=43% Similarity=0.554 Sum_probs=20.0
Q ss_pred EEEEecCCCcHHHHHHHHHHHhc
Q 047930 178 LGIYGMGGIGKTTLAKEVARKAE 200 (395)
Q Consensus 178 i~I~G~~GiGKTtLa~~v~~~~~ 200 (395)
|.|.|..|+|||||++.+++..+
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~ 24 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELK 24 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhh
Confidence 67999999999999999998864
No 435
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=95.50 E-value=0.015 Score=50.16 Aligned_cols=25 Identities=32% Similarity=0.484 Sum_probs=22.5
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHh
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
..+|.|.|.+|+||||+|+.+....
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999999874
No 436
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=95.50 E-value=0.047 Score=52.59 Aligned_cols=86 Identities=16% Similarity=0.293 Sum_probs=50.5
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCC-cCCHHHHHHHHHHHhCCC-------ccccchhh-----
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQ-IQDIRKIQGEFADKLGLT-------LHEETESG----- 241 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~~-------~~~~~~~~----- 241 (395)
-..++|.|..|+|||||++.+..... .+..++..+.. ...+.+++.+....-... ....+...
T Consensus 155 GqrigI~G~sG~GKSTLL~~I~~~~~----~d~~vi~~iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~~~r~~a~ 230 (433)
T PRK07594 155 GQRVGIFSAPGVGKSTLLAMLCNAPD----ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRAL 230 (433)
T ss_pred CCEEEEECCCCCCccHHHHHhcCCCC----CCEEEEEEECCCchHHHHHHHHhhccCCcceEEEEEECCCCCHHHHHHHH
Confidence 35689999999999999998886543 44455555554 334445555543311100 00011111
Q ss_pred -hHHHHHHHHh-cCCeEEEEEeCCC
Q 047930 242 -RARSLCNRLK-KEKRILVILDNIW 264 (395)
Q Consensus 242 -~~~~l~~~l~-~~kr~LlVlDdv~ 264 (395)
....+.+++. +++++||++||+-
T Consensus 231 ~~a~tiAEyfrd~G~~VLl~~Dslt 255 (433)
T PRK07594 231 FVATTIAEFFRDNGKRVVLLADSLT 255 (433)
T ss_pred HHHHHHHHHHHHCCCcEEEEEeCHH
Confidence 1223445553 5889999999994
No 437
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=95.50 E-value=0.052 Score=48.92 Aligned_cols=28 Identities=25% Similarity=0.287 Sum_probs=24.5
Q ss_pred CCceEEEEEecCCCcHHHHHHHHHHHhc
Q 047930 173 PDVNMLGIYGMGGIGKTTLAKEVARKAE 200 (395)
Q Consensus 173 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (395)
.++-+++.+|.+|+||.-.++.++++..
T Consensus 108 ~KPLvLSfHG~tGTGKN~Va~iiA~n~~ 135 (344)
T KOG2170|consen 108 RKPLVLSFHGWTGTGKNYVAEIIAENLY 135 (344)
T ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHH
Confidence 3577999999999999999999998754
No 438
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=95.50 E-value=0.015 Score=45.73 Aligned_cols=24 Identities=46% Similarity=0.587 Sum_probs=18.0
Q ss_pred EEEEecCCCcHHHHHHHHHHHhcc
Q 047930 178 LGIYGMGGIGKTTLAKEVARKAEN 201 (395)
Q Consensus 178 i~I~G~~GiGKTtLa~~v~~~~~~ 201 (395)
+.|+|.+|+||||+|+.+......
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~ 25 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGL 25 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT-
T ss_pred EeeECCCccHHHHHHHHHHHHcCC
Confidence 679999999999999999988663
No 439
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=95.49 E-value=0.044 Score=47.04 Aligned_cols=24 Identities=38% Similarity=0.563 Sum_probs=22.0
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhc
Q 047930 177 MLGIYGMGGIGKTTLAKEVARKAE 200 (395)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~~ 200 (395)
+|+|.|+.|+||||+++.+.+...
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l~ 25 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERLE 25 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998764
No 440
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=95.48 E-value=0.031 Score=51.73 Aligned_cols=46 Identities=26% Similarity=0.453 Sum_probs=31.3
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHH
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKI 222 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~ 222 (395)
.+++.+.|.||+||||+|....-...... ..++-|+.....+..++
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g--~kvLlvStDPAhsL~d~ 47 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAESG--KKVLLVSTDPAHSLGDV 47 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHcC--CcEEEEEeCCCCchHhh
Confidence 46899999999999999999766554432 33566665444444333
No 441
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=95.48 E-value=0.013 Score=48.35 Aligned_cols=33 Identities=24% Similarity=0.330 Sum_probs=25.6
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEE
Q 047930 177 MLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIF 210 (395)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~w 210 (395)
++.|+|+.|+|||||+..+......+ .+...+.
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~~-G~~V~vi 33 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKAR-GYRVATI 33 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhc-CCeEEEE
Confidence 57899999999999999999987643 3444333
No 442
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=95.46 E-value=0.012 Score=48.65 Aligned_cols=20 Identities=40% Similarity=0.684 Sum_probs=18.8
Q ss_pred EEEEEecCCCcHHHHHHHHH
Q 047930 177 MLGIYGMGGIGKTTLAKEVA 196 (395)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~ 196 (395)
.|+|.|.+|+||||++..+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999988
No 443
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.46 E-value=0.019 Score=50.50 Aligned_cols=25 Identities=24% Similarity=0.222 Sum_probs=21.4
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHH
Q 047930 174 DVNMLGIYGMGGIGKTTLAKEVARK 198 (395)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~ 198 (395)
+.+++.|.|+.|.||||+.+.+...
T Consensus 29 ~~~~~~l~G~n~~GKstll~~i~~~ 53 (222)
T cd03285 29 KSRFLIITGPNMGGKSTYIRQIGVI 53 (222)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHH
Confidence 4568999999999999999987643
No 444
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=95.45 E-value=0.032 Score=46.70 Aligned_cols=24 Identities=46% Similarity=0.556 Sum_probs=21.5
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhc
Q 047930 177 MLGIYGMGGIGKTTLAKEVARKAE 200 (395)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~~ 200 (395)
+|.|.|+.|+||||+|+.+.+...
T Consensus 2 iI~i~G~~GSGKstia~~la~~lg 25 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKLS 25 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 689999999999999999987643
No 445
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=95.44 E-value=0.062 Score=51.65 Aligned_cols=86 Identities=22% Similarity=0.377 Sum_probs=49.6
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCc-CCHHHHHHHHHHHhCCC--------ccccchh-----
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQI-QDIRKIQGEFADKLGLT--------LHEETES----- 240 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~--------~~~~~~~----- 240 (395)
-..++|.|..|+|||||+..+..... .+..++..+... ....++...+...-... .++....
T Consensus 137 Gq~~~I~G~sG~GKTtLl~~I~~~~~----~~~~vi~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~tsd~~~~~r~~a~ 212 (411)
T TIGR03496 137 GQRMGIFAGSGVGKSTLLGMMARYTE----ADVVVVGLIGERGREVKEFIEDILGEEGLARSVVVAATADESPLMRLRAA 212 (411)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCC----CCEEEEEEEecChHHHHHHHHHHhhCCCcceEEEEEECCCCCHHHHHHHH
Confidence 34689999999999999998886543 234444555443 33455555544331111 1111100
Q ss_pred hhHHHHHHHHh-cCCeEEEEEeCCC
Q 047930 241 GRARSLCNRLK-KEKRILVILDNIW 264 (395)
Q Consensus 241 ~~~~~l~~~l~-~~kr~LlVlDdv~ 264 (395)
...-.+.+++. ++++.||++||+-
T Consensus 213 ~~a~tiAEyfr~~G~~Vll~~Dslt 237 (411)
T TIGR03496 213 FYATAIAEYFRDQGKDVLLLMDSLT 237 (411)
T ss_pred HHHHHHHHHHHHCCCCEEEEEeChH
Confidence 11223445542 4889999999984
No 446
>PRK13975 thymidylate kinase; Provisional
Probab=95.43 E-value=0.015 Score=50.03 Aligned_cols=25 Identities=40% Similarity=0.504 Sum_probs=22.8
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhc
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARKAE 200 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (395)
.+|+|.|+.|+||||+++.+.+...
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~ 27 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLN 27 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999998865
No 447
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=95.43 E-value=0.048 Score=46.80 Aligned_cols=26 Identities=31% Similarity=0.414 Sum_probs=23.3
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhcc
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARKAEN 201 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~ 201 (395)
..|+|.|..|+||||+++.+.+....
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~l~~ 29 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKLLQE 29 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 57999999999999999999987654
No 448
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=95.42 E-value=0.098 Score=51.83 Aligned_cols=49 Identities=16% Similarity=0.142 Sum_probs=33.5
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHH
Q 047930 174 DVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGE 225 (395)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 225 (395)
.-+++.|.|.+|+||||+|.++......+ .=..++|++... +..++.+.
T Consensus 20 ~g~~~Li~G~pGsGKT~la~qfl~~g~~~-~ge~~lyvs~eE--~~~~l~~~ 68 (484)
T TIGR02655 20 IGRSTLVSGTSGTGKTLFSIQFLYNGIIH-FDEPGVFVTFEE--SPQDIIKN 68 (484)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHh-CCCCEEEEEEec--CHHHHHHH
Confidence 45789999999999999999986553211 013578888753 44554444
No 449
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=95.41 E-value=0.013 Score=48.03 Aligned_cols=24 Identities=29% Similarity=0.527 Sum_probs=21.4
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhc
Q 047930 177 MLGIYGMGGIGKTTLAKEVARKAE 200 (395)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~~ 200 (395)
++.|+|.+|+||||+|+.+.....
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~ 24 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLF 24 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999998764
No 450
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=95.40 E-value=0.028 Score=51.04 Aligned_cols=36 Identities=22% Similarity=0.221 Sum_probs=30.0
Q ss_pred HHHHhcCCCceEEEEEecCCCcHHHHHHHHHHHhcc
Q 047930 166 ILDALKNPDVNMLGIYGMGGIGKTTLAKEVARKAEN 201 (395)
Q Consensus 166 l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 201 (395)
...++...+..++.|.|..|+|||||+..+.+....
T Consensus 95 ~r~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~ 130 (290)
T PRK10463 95 NRARFAARKQLVLNLVSSPGSGKTTLLTETLMRLKD 130 (290)
T ss_pred HHHHHHhcCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 444555678899999999999999999999988653
No 451
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=95.38 E-value=0.072 Score=51.40 Aligned_cols=87 Identities=18% Similarity=0.179 Sum_probs=47.7
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCH-HHHHHHHHHH-hCC------Cccccchh-----h
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDI-RKIQGEFADK-LGL------TLHEETES-----G 241 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~-~~~~~~i~~~-l~~------~~~~~~~~-----~ 241 (395)
-..++|.|..|+|||||++.+..... -+..+...+...... .++....+.. +.. ..++.+.. .
T Consensus 157 Gq~~~i~G~sG~GKStLl~~i~~~~~----~~v~vi~~iGergrev~e~~~~~l~~~l~~tvvV~atsddsp~~R~~~~~ 232 (434)
T PRK08472 157 GQKLGIFAGSGVGKSTLMGMIVKGCL----APIKVVALIGERGREIPEFIEKNLGGDLENTVIVVATSDDSPLMRKYGAF 232 (434)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhccC----CCEEEEEeeCccchhHHHHHHHHhcCcccceEEEEECCCCCHHHhhHHHH
Confidence 35789999999999999999986543 234444444444322 2332222211 100 00011100 1
Q ss_pred hHHHHHHHHh-cCCeEEEEEeCCCC
Q 047930 242 RARSLCNRLK-KEKRILVILDNIWE 265 (395)
Q Consensus 242 ~~~~l~~~l~-~~kr~LlVlDdv~~ 265 (395)
....+.+++. +++++||++||+-.
T Consensus 233 ~a~~iAEyFrd~G~~Vll~~DslTr 257 (434)
T PRK08472 233 CAMSVAEYFKNQGLDVLFIMDSVTR 257 (434)
T ss_pred HHHHHHHHHHHcCCCEEEecccchH
Confidence 1234455553 48999999999953
No 452
>PRK13948 shikimate kinase; Provisional
Probab=95.37 E-value=0.019 Score=48.81 Aligned_cols=28 Identities=25% Similarity=0.399 Sum_probs=24.2
Q ss_pred CCceEEEEEecCCCcHHHHHHHHHHHhc
Q 047930 173 PDVNMLGIYGMGGIGKTTLAKEVARKAE 200 (395)
Q Consensus 173 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (395)
.....|.++|+.|+||||+++.+.+...
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg 35 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRALM 35 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3457899999999999999999998764
No 453
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=95.36 E-value=0.014 Score=48.68 Aligned_cols=21 Identities=38% Similarity=0.452 Sum_probs=17.8
Q ss_pred EEEEecCCCcHHHHHHHHHHH
Q 047930 178 LGIYGMGGIGKTTLAKEVARK 198 (395)
Q Consensus 178 i~I~G~~GiGKTtLa~~v~~~ 198 (395)
|+|.|..|+|||||++.+...
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 789999999999999999976
No 454
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=95.35 E-value=0.84 Score=40.28 Aligned_cols=73 Identities=26% Similarity=0.350 Sum_probs=44.1
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCccccchhhhHHHHHHHHhcC
Q 047930 174 DVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFADKLGLTLHEETESGRARSLCNRLKKE 253 (395)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 253 (395)
.++-+.++|++|+|||.||+.++++-... | +.+..+ ++.++. ++.. ......+..-.+.+
T Consensus 188 pprgvllygppg~gktml~kava~~t~a~--f-----irvvgs----efvqky---lgeg------prmvrdvfrlaken 247 (408)
T KOG0727|consen 188 PPRGVLLYGPPGTGKTMLAKAVANHTTAA--F-----IRVVGS----EFVQKY---LGEG------PRMVRDVFRLAKEN 247 (408)
T ss_pred CCcceEEeCCCCCcHHHHHHHHhhccchh--e-----eeeccH----HHHHHH---hccC------cHHHHHHHHHHhcc
Confidence 45667799999999999999999876532 3 333221 222221 2211 12333444444456
Q ss_pred CeEEEEEeCCCCc
Q 047930 254 KRILVILDNIWEN 266 (395)
Q Consensus 254 kr~LlVlDdv~~~ 266 (395)
-+-++++|+++..
T Consensus 248 apsiifideidai 260 (408)
T KOG0727|consen 248 APSIIFIDEIDAI 260 (408)
T ss_pred CCcEEEeehhhhH
Confidence 7889999998643
No 455
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=95.33 E-value=0.099 Score=50.60 Aligned_cols=89 Identities=19% Similarity=0.356 Sum_probs=56.0
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcC-CHHHHHHHHHHHhCCCc-------cccchh------h
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQ-DIRKIQGEFADKLGLTL-------HEETES------G 241 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~-------~~~~~~------~ 241 (395)
.-++|.|.+|+|||||+.++......+ +-..++++-+.... ...+++.++...-.... .+.+.. .
T Consensus 144 Qr~~If~~~G~GKt~L~~~~~~~~~~~-~~~v~V~alIGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~a~~ 222 (461)
T TIGR01039 144 GKIGLFGGAGVGKTVLIQELINNIAKE-HGGYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMRVAL 222 (461)
T ss_pred CEEEeecCCCCChHHHHHHHHHHHHhc-CCCeEEEEEecCCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHH
Confidence 458899999999999999998775432 23467777776543 45667776654321110 011111 1
Q ss_pred hHHHHHHHHh--cCCeEEEEEeCCCC
Q 047930 242 RARSLCNRLK--KEKRILVILDNIWE 265 (395)
Q Consensus 242 ~~~~l~~~l~--~~kr~LlVlDdv~~ 265 (395)
....+.+++. +++++||++||+-.
T Consensus 223 ~a~tiAEyfrd~~G~~VLll~DslTR 248 (461)
T TIGR01039 223 TGLTMAEYFRDEQGQDVLLFIDNIFR 248 (461)
T ss_pred HHHHHHHHHHHhcCCeeEEEecchhH
Confidence 2234556663 37899999999943
No 456
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=95.31 E-value=0.015 Score=50.75 Aligned_cols=23 Identities=30% Similarity=0.449 Sum_probs=20.5
Q ss_pred eEEEEEecCCCcHHHHHHHHHHH
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARK 198 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~ 198 (395)
-.++|+|++|+|||||...+..-
T Consensus 32 e~vaI~GpSGSGKSTLLniig~l 54 (226)
T COG1136 32 EFVAIVGPSGSGKSTLLNLLGGL 54 (226)
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 47999999999999999998754
No 457
>PRK00698 tmk thymidylate kinase; Validated
Probab=95.29 E-value=0.05 Score=47.07 Aligned_cols=26 Identities=27% Similarity=0.386 Sum_probs=23.2
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhcc
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARKAEN 201 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~ 201 (395)
.+|+|.|+.|+||||+++.+.+....
T Consensus 4 ~~I~ieG~~gsGKsT~~~~L~~~l~~ 29 (205)
T PRK00698 4 MFITIEGIDGAGKSTQIELLKELLEQ 29 (205)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 58999999999999999999987653
No 458
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.28 E-value=0.016 Score=50.21 Aligned_cols=24 Identities=29% Similarity=0.205 Sum_probs=20.8
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHH
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARK 198 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~ 198 (395)
..++.|.|+.|.||||+.+.+...
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~~ 52 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIALL 52 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999999988644
No 459
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=95.27 E-value=0.026 Score=46.73 Aligned_cols=27 Identities=30% Similarity=0.521 Sum_probs=23.8
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhccc
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARKAENE 202 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~~ 202 (395)
+++.|+|..|+|||||+..+.......
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~l~~~ 28 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPALSAR 28 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 579999999999999999999876543
No 460
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=95.27 E-value=0.11 Score=50.24 Aligned_cols=87 Identities=17% Similarity=0.332 Sum_probs=50.3
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCc-CCHHHHHHHHHHHhCCC--------ccccchh-----
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQI-QDIRKIQGEFADKLGLT--------LHEETES----- 240 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~--------~~~~~~~----- 240 (395)
-..++|+|..|+|||||++.+..... .+.+++..+... ....++...+...-+.. .++.+..
T Consensus 168 GqrigI~G~sG~GKSTLl~~I~g~~~----~dv~V~g~Ig~rg~ev~~~~~~~~~~~~l~rsvvv~atsd~~p~~r~~a~ 243 (451)
T PRK05688 168 GQRLGLFAGTGVGKSVLLGMMTRFTE----ADIIVVGLIGERGREVKEFIEHILGEEGLKRSVVVASPADDAPLMRLRAA 243 (451)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC----CCEEEEEEeCcCcHhHHHHHHHHhhcCCccEEEEEEECCCCCHHHHHHHH
Confidence 34689999999999999998876432 344444444433 24455555554442221 1111110
Q ss_pred hhHHHHHHHHh-cCCeEEEEEeCCCC
Q 047930 241 GRARSLCNRLK-KEKRILVILDNIWE 265 (395)
Q Consensus 241 ~~~~~l~~~l~-~~kr~LlVlDdv~~ 265 (395)
.....+.+++. +++++||++||+-.
T Consensus 244 ~~a~aiAEyfrd~G~~VLl~~DslTR 269 (451)
T PRK05688 244 MYCTRIAEYFRDKGKNVLLLMDSLTR 269 (451)
T ss_pred HHHHHHHHHHHHCCCCEEEEecchhH
Confidence 11223444443 58999999999853
No 461
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=95.26 E-value=0.05 Score=49.21 Aligned_cols=29 Identities=38% Similarity=0.417 Sum_probs=25.5
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhccc
Q 047930 174 DVNMLGIYGMGGIGKTTLAKEVARKAENE 202 (395)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 202 (395)
.+..+.|||+.|.|||-+|+.|+....+.
T Consensus 165 ~Pkg~ll~GppGtGKTlla~~Vaa~mg~n 193 (388)
T KOG0651|consen 165 PPKGLLLYGPPGTGKTLLARAVAATMGVN 193 (388)
T ss_pred CCceeEEeCCCCCchhHHHHHHHHhcCCc
Confidence 36789999999999999999999887654
No 462
>PRK13946 shikimate kinase; Provisional
Probab=95.23 E-value=0.018 Score=49.13 Aligned_cols=26 Identities=23% Similarity=0.382 Sum_probs=23.1
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhc
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARKAE 200 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (395)
.+.|.++|+.|+||||+++.+.+...
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg 35 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLG 35 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 35799999999999999999998864
No 463
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.23 E-value=0.36 Score=49.17 Aligned_cols=167 Identities=15% Similarity=0.136 Sum_probs=86.9
Q ss_pred chHHHHHHHHHHhcCC---------CceEEEEEecCCCcHHHHHHHHHHHhcccCCC--CEEEEEEeCCcCCHHHHHHHH
Q 047930 158 SRMSTLNDILDALKNP---------DVNMLGIYGMGGIGKTTLAKEVARKAENEKLF--DQVIFVEVSQIQDIRKIQGEF 226 (395)
Q Consensus 158 gr~~~~~~l~~~l~~~---------~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f--~~~~wv~~s~~~~~~~~~~~i 226 (395)
+++..+..+.+.+..+ -..++.++|.+|+||||+++.++...... -| +|.-.++-+...+
T Consensus 405 ~~~~~~~~l~~vl~p~~~~s~~~~~~~~~vLLhG~~g~GK~t~V~~vas~lg~h-~~evdc~el~~~s~~~~-------- 475 (953)
T KOG0736|consen 405 GLEAKVLELVAVLSPQKQPSGALLTLNPSVLLHGPPGSGKTTVVRAVASELGLH-LLEVDCYELVAESASHT-------- 475 (953)
T ss_pred cchHHHHHHHHHhCcccCcchhccccceEEEEeCCCCCChHHHHHHHHHHhCCc-eEeccHHHHhhcccchh--------
Confidence 4555566677766521 24678899999999999999999876531 11 2211111111111
Q ss_pred HHHhCCCccccchhhhHHHHHHHHhcCCeEEEEEeCCCCc-------cc------cchhc--cccCCCCCCcEEEEeecc
Q 047930 227 ADKLGLTLHEETESGRARSLCNRLKKEKRILVILDNIWEN-------LD------FQAVG--IPHGDGHKGSKVLLTARS 291 (395)
Q Consensus 227 ~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~-------~~------~~~l~--~~l~~~~~gs~iivTtR~ 291 (395)
...........+.-.+.+|.|-+++-. ++ ...+. ..+....++.-++.||.+
T Consensus 476 -------------etkl~~~f~~a~~~~pavifl~~~dvl~id~dgged~rl~~~i~~~ls~e~~~~~~~~~ivv~t~~s 542 (953)
T KOG0736|consen 476 -------------ETKLQAIFSRARRCSPAVLFLRNLDVLGIDQDGGEDARLLKVIRHLLSNEDFKFSCPPVIVVATTSS 542 (953)
T ss_pred -------------HHHHHHHHHHHhhcCceEEEEeccceeeecCCCchhHHHHHHHHHHHhcccccCCCCceEEEEeccc
Confidence 111122222222234455555544311 11 11111 112223445555555544
Q ss_pred -hhhhhhc-CCCcceeecCCCChHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchH
Q 047930 292 -LDVLSRK-MDSQQNFSFDVLKEDEAWSLFKKMAGDYIEGSEFKWVAREVAKECAGLPV 348 (395)
Q Consensus 292 -~~va~~~-~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPl 348 (395)
++++... ....+.++++.+++++-.++|+-.+.....+.+. ..+..+.+|.|.-+
T Consensus 543 ~~~lp~~i~~~f~~ei~~~~lse~qRl~iLq~y~~~~~~n~~v--~~k~~a~~t~gfs~ 599 (953)
T KOG0736|consen 543 IEDLPADIQSLFLHEIEVPALSEEQRLEILQWYLNHLPLNQDV--NLKQLARKTSGFSF 599 (953)
T ss_pred cccCCHHHHHhhhhhccCCCCCHHHHHHHHHHHHhccccchHH--HHHHHHHhcCCCCH
Confidence 4443211 1234688999999999999999887544333322 24567777776543
No 464
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=95.22 E-value=0.037 Score=45.90 Aligned_cols=33 Identities=27% Similarity=0.399 Sum_probs=27.3
Q ss_pred hcCCCceEEEEEecCCCcHHHHHHHHHHHhccc
Q 047930 170 LKNPDVNMLGIYGMGGIGKTTLAKEVARKAENE 202 (395)
Q Consensus 170 l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 202 (395)
+...+..+|-+.|.+|.||||+|..++......
T Consensus 18 ~~~~~~~viW~TGLSGsGKSTiA~ale~~L~~~ 50 (197)
T COG0529 18 LKGQKGAVIWFTGLSGSGKSTIANALEEKLFAK 50 (197)
T ss_pred HhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHc
Confidence 334566789999999999999999999987643
No 465
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=95.22 E-value=0.018 Score=48.69 Aligned_cols=25 Identities=20% Similarity=0.352 Sum_probs=22.2
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhc
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARKAE 200 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (395)
.++.|+|++|+|||||++.++....
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~~l~ 28 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAALFS 28 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4789999999999999999998654
No 466
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=95.20 E-value=0.13 Score=45.26 Aligned_cols=47 Identities=17% Similarity=0.311 Sum_probs=33.5
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHH
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGE 225 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 225 (395)
-.++.|.|.+|+|||+++.+++.....+ =..++|++... +..++.+.
T Consensus 16 g~~~li~G~~G~GKt~~~~~~~~~~~~~--g~~~~y~s~e~--~~~~l~~~ 62 (224)
T TIGR03880 16 GHVIVVIGEYGTGKTTFSLQFLYQGLKN--GEKAMYISLEE--REERILGY 62 (224)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEECCC--CHHHHHHH
Confidence 4688899999999999999988764332 24577887765 34444444
No 467
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=95.20 E-value=0.056 Score=48.90 Aligned_cols=35 Identities=20% Similarity=0.157 Sum_probs=25.8
Q ss_pred HHHHHHhcCCCceEEEEEecCCCcHHHHHHHHHHHh
Q 047930 164 NDILDALKNPDVNMLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 164 ~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
+.+..++ .....++.|.|+.|+||||++..+.+..
T Consensus 70 ~~l~~~~-~~~~GlilisG~tGSGKTT~l~all~~i 104 (264)
T cd01129 70 EIFRKLL-EKPHGIILVTGPTGSGKTTTLYSALSEL 104 (264)
T ss_pred HHHHHHH-hcCCCEEEEECCCCCcHHHHHHHHHhhh
Confidence 3343333 3445689999999999999999887664
No 468
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=95.19 E-value=0.085 Score=50.69 Aligned_cols=46 Identities=22% Similarity=0.161 Sum_probs=32.9
Q ss_pred chhchHHHHHHHHHHh-------cC----C-------CceEEEEEecCCCcHHHHHHHHHHHhc
Q 047930 155 AFESRMSTLNDILDAL-------KN----P-------DVNMLGIYGMGGIGKTTLAKEVARKAE 200 (395)
Q Consensus 155 ~~~gr~~~~~~l~~~l-------~~----~-------~~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (395)
.++|.++.++.+...+ .. . ....+.++|++|+|||++|+.+.....
T Consensus 78 ~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~ 141 (413)
T TIGR00382 78 YVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILN 141 (413)
T ss_pred eecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcC
Confidence 3577777777665444 11 1 125789999999999999999997654
No 469
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=95.19 E-value=0.062 Score=50.09 Aligned_cols=37 Identities=30% Similarity=0.516 Sum_probs=28.7
Q ss_pred HHHHHhc--CCCceEEEEEecCCCcHHHHHHHHHHHhcc
Q 047930 165 DILDALK--NPDVNMLGIYGMGGIGKTTLAKEVARKAEN 201 (395)
Q Consensus 165 ~l~~~l~--~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 201 (395)
.+++.+. .++..+|+|.|.+|+|||||+..+......
T Consensus 44 ~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~~l~~ 82 (332)
T PRK09435 44 ELLDALLPHTGNALRIGITGVPGVGKSTFIEALGMHLIE 82 (332)
T ss_pred HHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3444443 456789999999999999999998877654
No 470
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=95.19 E-value=0.018 Score=52.52 Aligned_cols=27 Identities=37% Similarity=0.673 Sum_probs=22.8
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhccc
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARKAENE 202 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~~ 202 (395)
+.|+|.|-||+||||++..++.....+
T Consensus 1 ~~ia~~gKGGVGKTT~a~nLA~~La~~ 27 (275)
T TIGR01287 1 RQIAIYGKGGIGKSTTTQNIAAALAEM 27 (275)
T ss_pred CeeEEeCCCcCcHHHHHHHHHHHHHHC
Confidence 468999999999999999988776543
No 471
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=95.18 E-value=0.02 Score=50.96 Aligned_cols=33 Identities=30% Similarity=0.460 Sum_probs=22.9
Q ss_pred EEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeC
Q 047930 180 IYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVS 214 (395)
Q Consensus 180 I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s 214 (395)
|+|++|+||||+++.+.+.....+ ..++-|+..
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~--~~~~~vNLD 33 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNG--RDVYIVNLD 33 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT---S-EEEEE--
T ss_pred CCCCCCCCHHHHHHHHHHHHHhcc--CCceEEEcc
Confidence 689999999999999999876542 335555553
No 472
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=95.18 E-value=0.042 Score=50.63 Aligned_cols=54 Identities=24% Similarity=0.263 Sum_probs=39.6
Q ss_pred ccchhchHHHHHH---HHHHhcCC--CceEEEEEecCCCcHHHHHHHHHHHhcccCCCC
Q 047930 153 YEAFESRMSTLND---ILDALKNP--DVNMLGIYGMGGIGKTTLAKEVARKAENEKLFD 206 (395)
Q Consensus 153 ~~~~~gr~~~~~~---l~~~l~~~--~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~ 206 (395)
..+|+|..+..+. +++.+.++ .-+.|.++|++|+|||+||-.+.+.....-+|.
T Consensus 38 ~dG~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~ 96 (450)
T COG1224 38 GDGLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIARELGEDVPFV 96 (450)
T ss_pred CCcccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHhCCCCCce
Confidence 4568887655443 45555544 246789999999999999999999987665664
No 473
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=95.16 E-value=0.031 Score=45.04 Aligned_cols=37 Identities=16% Similarity=0.267 Sum_probs=29.5
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEE
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVE 212 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~ 212 (395)
-++.+.|++|+|||||..-+.-....+-.|...+|+.
T Consensus 29 eivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~ 65 (213)
T COG4136 29 EIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLN 65 (213)
T ss_pred cEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEEC
Confidence 4789999999999999999888777652334578875
No 474
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=95.15 E-value=0.026 Score=51.23 Aligned_cols=28 Identities=29% Similarity=0.458 Sum_probs=25.0
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhcccC
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARKAENEK 203 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~ 203 (395)
++|+|+|.+|+|||||+.++......+.
T Consensus 2 ~~i~i~G~~gSGKTTLi~~Li~~L~~~G 29 (274)
T PRK14493 2 KVLSIVGYKATGKTTLVERLVDRLSGRG 29 (274)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhCC
Confidence 5799999999999999999999887654
No 475
>PLN02200 adenylate kinase family protein
Probab=95.15 E-value=0.022 Score=50.60 Aligned_cols=26 Identities=19% Similarity=0.187 Sum_probs=22.7
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHh
Q 047930 174 DVNMLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
.+.+|.|.|++|+||||+++.+....
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~~~ 67 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVETF 67 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45688999999999999999998754
No 476
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=95.14 E-value=0.031 Score=48.19 Aligned_cols=30 Identities=33% Similarity=0.368 Sum_probs=24.6
Q ss_pred CCceEEEEEecCCCcHHHHHHHHHHHhccc
Q 047930 173 PDVNMLGIYGMGGIGKTTLAKEVARKAENE 202 (395)
Q Consensus 173 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 202 (395)
++.++..|.|++|+||||+++.+.......
T Consensus 16 ~~~~~~~l~G~aGtGKT~~l~~~~~~~~~~ 45 (196)
T PF13604_consen 16 SGDRVSVLQGPAGTGKTTLLKALAEALEAA 45 (196)
T ss_dssp CTCSEEEEEESTTSTHHHHHHHHHHHHHHT
T ss_pred cCCeEEEEEECCCCCHHHHHHHHHHHHHhC
Confidence 445678899999999999999988776553
No 477
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=95.14 E-value=0.18 Score=44.88 Aligned_cols=50 Identities=16% Similarity=0.280 Sum_probs=34.6
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHHH
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFAD 228 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 228 (395)
.++.|.|.+|+|||+++.++..+...+. =..++|++... +..++...+..
T Consensus 14 ~l~lI~G~~G~GKT~~~~~~~~~~~~~~-g~~vly~s~E~--~~~~~~~r~~~ 63 (242)
T cd00984 14 DLIIIAARPSMGKTAFALNIAENIAKKQ-GKPVLFFSLEM--SKEQLLQRLLA 63 (242)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHhC-CCceEEEeCCC--CHHHHHHHHHH
Confidence 5788999999999999999887654431 22467776644 45555555543
No 478
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=95.11 E-value=0.061 Score=54.53 Aligned_cols=53 Identities=15% Similarity=0.042 Sum_probs=33.2
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhccc-CCCCEEEEEEeCCcCCHHHHHHHHH
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARKAENE-KLFDQVIFVEVSQIQDIRKIQGEFA 227 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~-~~f~~~~wv~~s~~~~~~~~~~~i~ 227 (395)
.++..|.|.+|+||||++..+....... ..-...+.+..+..-....+.+.+.
T Consensus 167 ~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~ 220 (615)
T PRK10875 167 RRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLG 220 (615)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHH
Confidence 3578899999999999999888764321 1112455665554444444444443
No 479
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=95.11 E-value=0.083 Score=50.99 Aligned_cols=26 Identities=23% Similarity=0.414 Sum_probs=21.9
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHh
Q 047930 174 DVNMLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
+-..++|.|..|+|||||++.+....
T Consensus 154 ~GQ~igI~G~sGaGKSTLl~~I~g~~ 179 (434)
T PRK07196 154 KGQRVGLMAGSGVGKSVLLGMITRYT 179 (434)
T ss_pred cceEEEEECCCCCCccHHHHHHhccc
Confidence 34579999999999999999887654
No 480
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=95.10 E-value=0.091 Score=47.82 Aligned_cols=88 Identities=22% Similarity=0.315 Sum_probs=49.5
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhc-ccCC-------CCEEEEEEeCCc-CCHHHHHHHHHHHhCCCccccchh-------
Q 047930 177 MLGIYGMGGIGKTTLAKEVARKAE-NEKL-------FDQVIFVEVSQI-QDIRKIQGEFADKLGLTLHEETES------- 240 (395)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~~-~~~~-------f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~~~~~------- 240 (395)
+..|.|.||+|||||+-..+-... .++. ...+++|++... .++-.-++.+..+++.+..+..+.
T Consensus 91 ~~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvslEl~re~~L~Rl~~v~a~mgLsPadvrn~dltd~~G 170 (402)
T COG3598 91 VSILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSLELYREDILERLEPVRARMGLSPADVRNMDLTDVSG 170 (402)
T ss_pred eEEEecCCcccHhHHHHHHHHHHHhhHHHhcccccCCCeEEEEEeccChHHHHHHHHHHHHHcCCChHhhhheecccccc
Confidence 344669999999999987664321 1222 335778877543 244455566677776543221100
Q ss_pred ----------hhHHHHHHHHhcCCeEEEEEeCCC
Q 047930 241 ----------GRARSLCNRLKKEKRILVILDNIW 264 (395)
Q Consensus 241 ----------~~~~~l~~~l~~~kr~LlVlDdv~ 264 (395)
....+....+.+.++-++|+|-.-
T Consensus 171 aa~~~d~l~pkl~rRfek~~~Q~rp~~vViDp~v 204 (402)
T COG3598 171 AADESDVLSPKLYRRFEKILEQKRPDFVVIDPFV 204 (402)
T ss_pred CCCccccccHHHHHHHHHHHHHhCCCeEEEcchh
Confidence 112333333344556689999753
No 481
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=95.09 E-value=0.063 Score=51.26 Aligned_cols=46 Identities=24% Similarity=0.303 Sum_probs=34.5
Q ss_pred chhchHHHHHHHHHHhcC--------------CCceEEEEEecCCCcHHHHHHHHHHHhc
Q 047930 155 AFESRMSTLNDILDALKN--------------PDVNMLGIYGMGGIGKTTLAKEVARKAE 200 (395)
Q Consensus 155 ~~~gr~~~~~~l~~~l~~--------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (395)
.++|.+..++.+..++.. ...+.|.++|++|+|||+||+.+.....
T Consensus 16 ~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~ 75 (443)
T PRK05201 16 YIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLAN 75 (443)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 366777777766655521 1246789999999999999999998764
No 482
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=95.09 E-value=0.1 Score=50.61 Aligned_cols=88 Identities=18% Similarity=0.285 Sum_probs=48.2
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHHHHhCC-------Cccccchh------
Q 047930 174 DVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFADKLGL-------TLHEETES------ 240 (395)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~-------~~~~~~~~------ 240 (395)
.-..++|+|..|+|||||++.+...... -..++++.--......++..+.+..-+. ...+.+..
T Consensus 157 ~Gq~i~I~G~sG~GKStLl~~I~~~~~~---~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~~~~~~r~~~~ 233 (438)
T PRK07721 157 KGQRVGIFAGSGVGKSTLMGMIARNTSA---DLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSDQPALMRIKGA 233 (438)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcccCC---CeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCCCCHHHHHHHH
Confidence 4467899999999999999988875432 2234443333333444444332211100 00011111
Q ss_pred hhHHHHHHHHh-cCCeEEEEEeCCC
Q 047930 241 GRARSLCNRLK-KEKRILVILDNIW 264 (395)
Q Consensus 241 ~~~~~l~~~l~-~~kr~LlVlDdv~ 264 (395)
...-.+.+++. ++++.||++||+-
T Consensus 234 ~~a~~iAEyfr~~g~~Vll~~Dslt 258 (438)
T PRK07721 234 YTATAIAEYFRDQGLNVMLMMDSVT 258 (438)
T ss_pred HHHHHHHHHHHHCCCcEEEEEeChH
Confidence 11223445552 5899999999984
No 483
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=95.09 E-value=0.077 Score=55.22 Aligned_cols=24 Identities=33% Similarity=0.315 Sum_probs=20.9
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHh
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
..++|+|..|+|||||++.+..-.
T Consensus 492 ~~iaIvG~sGsGKSTLlklL~gl~ 515 (694)
T TIGR03375 492 EKVAIIGRIGSGKSTLLKLLLGLY 515 (694)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 569999999999999999987543
No 484
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=95.08 E-value=0.019 Score=46.21 Aligned_cols=25 Identities=36% Similarity=0.497 Sum_probs=21.5
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhc
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARKAE 200 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (395)
.+++|+|..|+|||||.+.+.....
T Consensus 12 ~~~~i~G~nGsGKStLl~~l~g~~~ 36 (137)
T PF00005_consen 12 EIVAIVGPNGSGKSTLLKALAGLLP 36 (137)
T ss_dssp SEEEEEESTTSSHHHHHHHHTTSSH
T ss_pred CEEEEEccCCCccccceeeeccccc
Confidence 4789999999999999999876543
No 485
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=95.08 E-value=0.035 Score=47.68 Aligned_cols=43 Identities=21% Similarity=0.179 Sum_probs=29.4
Q ss_pred cchhchHHHHHHHHHHhcCCCceEEEEEecCCCcHHHHHHHHHHH
Q 047930 154 EAFESRMSTLNDILDALKNPDVNMLGIYGMGGIGKTTLAKEVARK 198 (395)
Q Consensus 154 ~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 198 (395)
..++|.+..+..+.-.... ..-+.+.|+.|+|||++|+.+..-
T Consensus 3 ~dI~GQe~aKrAL~iAAaG--~h~lLl~GppGtGKTmlA~~l~~l 45 (206)
T PF01078_consen 3 SDIVGQEEAKRALEIAAAG--GHHLLLIGPPGTGKTMLARRLPSL 45 (206)
T ss_dssp CCSSSTHHHHHHHHHHHHC--C--EEEES-CCCTHHHHHHHHHHC
T ss_pred hhhcCcHHHHHHHHHHHcC--CCCeEEECCCCCCHHHHHHHHHHh
Confidence 4566776666655544443 357889999999999999998753
No 486
>CHL00060 atpB ATP synthase CF1 beta subunit
Probab=95.06 E-value=0.093 Score=51.19 Aligned_cols=89 Identities=18% Similarity=0.318 Sum_probs=55.3
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcC-CHHHHHHHHHHHhCCCcc-----------ccchh---
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQ-DIRKIQGEFADKLGLTLH-----------EETES--- 240 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~-----------~~~~~--- 240 (395)
.-++|.|.+|+|||||+.++....... +-+.++++-+.+.. ...+++..+...-..... ...+.
T Consensus 162 QR~gIfgg~GvGKs~L~~~~~~~~~~~-~~dv~V~~lIGERgrEv~efi~~~~~~~~~~~~~~~~~rsvvv~atsd~p~~ 240 (494)
T CHL00060 162 GKIGLFGGAGVGKTVLIMELINNIAKA-HGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNEPPG 240 (494)
T ss_pred CEEeeecCCCCChhHHHHHHHHHHHHh-cCCeEEEEEeccCchHHHHHHHHHHhcCccccCcccccceEEEEECCCCCHH
Confidence 458899999999999999988773321 12678888887654 456677766652111100 00111
Q ss_pred ------hhHHHHHHHHhc-C-CeEEEEEeCCCC
Q 047930 241 ------GRARSLCNRLKK-E-KRILVILDNIWE 265 (395)
Q Consensus 241 ------~~~~~l~~~l~~-~-kr~LlVlDdv~~ 265 (395)
.....+.+++.. + +++||++||+-.
T Consensus 241 ~R~~a~~~A~tiAEyfrd~g~~~VLll~DslTR 273 (494)
T CHL00060 241 ARMRVGLTALTMAEYFRDVNKQDVLLFIDNIFR 273 (494)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCEEEEcccchH
Confidence 123346666642 4 499999999943
No 487
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=95.03 E-value=2 Score=38.46 Aligned_cols=115 Identities=13% Similarity=0.054 Sum_probs=63.7
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhcccC------------------CCCEEEEE-EeCCcCCHHHHHHHHHHHhCCCc
Q 047930 174 DVNMLGIYGMGGIGKTTLAKEVARKAENEK------------------LFDQVIFV-EVSQIQDIRKIQGEFADKLGLTL 234 (395)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~------------------~f~~~~wv-~~s~~~~~~~~~~~i~~~l~~~~ 234 (395)
......++|+.|+||.++|..++...-... |.|.. |+ ......
T Consensus 6 ~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~-~i~p~~~~I----------------- 67 (261)
T PRK05818 6 KTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFY-LIFDQKNPI----------------- 67 (261)
T ss_pred CCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEE-EecCCcccC-----------------
Confidence 345677899999999999999886643221 22211 11 111111
Q ss_pred cccchhhhHHHHHHHHh-----cCCeEEEEEeCCCCc--cccchhccccCCCCCCcEEEEeecc-hhhhhhcCCCcceee
Q 047930 235 HEETESGRARSLCNRLK-----KEKRILVILDNIWEN--LDFQAVGIPHGDGHKGSKVLLTARS-LDVLSRKMDSQQNFS 306 (395)
Q Consensus 235 ~~~~~~~~~~~l~~~l~-----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR~-~~va~~~~~~~~~~~ 306 (395)
..+.+..+.+.+. .+++-++|+|+++.. ..+..+...+-...+++.+|++|.+ ..+.....+....+.
T Consensus 68 ----~id~ir~l~~~l~~~s~e~~~~KV~II~~ae~m~~~AaNaLLK~LEEPp~~t~fiLit~~~~~lLpTI~SRCq~~~ 143 (261)
T PRK05818 68 ----KKEDALSIINKLNRPSVESNGKKIYIIYGIEKLNKQSANSLLKLIEEPPKNTYGIFTTRNENNILNTILSRCVQYV 143 (261)
T ss_pred ----CHHHHHHHHHHHccCchhcCCCEEEEeccHhhhCHHHHHHHHHhhcCCCCCeEEEEEECChHhCchHhhhheeeee
Confidence 1122333333332 134567789998654 4566666566444556666666665 445444445555666
Q ss_pred cCCC
Q 047930 307 FDVL 310 (395)
Q Consensus 307 l~~L 310 (395)
+.++
T Consensus 144 ~~~~ 147 (261)
T PRK05818 144 VLSK 147 (261)
T ss_pred cCCh
Confidence 6665
No 488
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=95.02 E-value=0.038 Score=51.50 Aligned_cols=53 Identities=25% Similarity=0.333 Sum_probs=35.3
Q ss_pred ccchhchHHHHHH---HHHHhcCCC--ceEEEEEecCCCcHHHHHHHHHHHhcccCCC
Q 047930 153 YEAFESRMSTLND---ILDALKNPD--VNMLGIYGMGGIGKTTLAKEVARKAENEKLF 205 (395)
Q Consensus 153 ~~~~~gr~~~~~~---l~~~l~~~~--~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f 205 (395)
..+++|..+..+. +++.+.+.+ -+.|.+.|++|+|||+||..+.+....+-+|
T Consensus 23 ~~GlVGQ~~AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF 80 (398)
T PF06068_consen 23 ADGLVGQEKAREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPF 80 (398)
T ss_dssp ETTEES-HHHHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-E
T ss_pred cccccChHHHHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCe
Confidence 4578887655443 555555544 4788899999999999999999987654333
No 489
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=95.02 E-value=1 Score=39.88 Aligned_cols=52 Identities=19% Similarity=0.329 Sum_probs=38.5
Q ss_pred cccccccchhchHHHHHHHHHHhcC-------------CCceEEEEEecCCCcHHHHHHHHHHHh
Q 047930 148 LSNKDYEAFESRMSTLNDILDALKN-------------PDVNMLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 148 ~~~~~~~~~~gr~~~~~~l~~~l~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
.+...+.++-|-+..+++|++.+.- ..++-+..+|++|.|||-+|+..+..-
T Consensus 165 kPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT 229 (424)
T KOG0652|consen 165 KPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQT 229 (424)
T ss_pred CCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhc
Confidence 3445566677788888888887641 235667899999999999999877543
No 490
>PRK04196 V-type ATP synthase subunit B; Provisional
Probab=95.02 E-value=0.083 Score=51.50 Aligned_cols=89 Identities=21% Similarity=0.270 Sum_probs=55.6
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhcccC--CCCEEEEEEeCCc-CCHHHHHHHHHHHhCCCc-------cccchh-----
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARKAENEK--LFDQVIFVEVSQI-QDIRKIQGEFADKLGLTL-------HEETES----- 240 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~--~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~-------~~~~~~----- 240 (395)
.-++|.|..|+|||||+..+.+....++ .=-.++++.+.+. ....+++.++...-.... .+.+..
T Consensus 144 QR~gIfgg~G~GKs~L~~~ia~~~~~d~~~~~~v~V~~~iGeRgrEv~e~~~~~~~~~~l~rtvvV~atsd~p~~~R~~a 223 (460)
T PRK04196 144 QKLPIFSGSGLPHNELAAQIARQAKVLGEEENFAVVFAAMGITFEEANFFMEDFEETGALERSVVFLNLADDPAIERILT 223 (460)
T ss_pred CEEEeeCCCCCCccHHHHHHHHhhhhccCCCceEEEEEEeccccHHHHHHHHHHHhcCCcceEEEEEEcCCCCHHHHHHH
Confidence 3478899999999999999988754321 0115677777654 346667777665422110 001111
Q ss_pred -hhHHHHHHHHh--cCCeEEEEEeCCC
Q 047930 241 -GRARSLCNRLK--KEKRILVILDNIW 264 (395)
Q Consensus 241 -~~~~~l~~~l~--~~kr~LlVlDdv~ 264 (395)
.....+.+++. +++++||++||+-
T Consensus 224 ~~~a~tiAEyfr~d~G~~VLli~DslT 250 (460)
T PRK04196 224 PRMALTAAEYLAFEKGMHVLVILTDMT 250 (460)
T ss_pred HHHHHHHHHHHHHhcCCcEEEEEcChH
Confidence 12234566665 5899999999984
No 491
>PRK13695 putative NTPase; Provisional
Probab=95.00 E-value=0.035 Score=46.79 Aligned_cols=25 Identities=40% Similarity=0.602 Sum_probs=21.5
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhcc
Q 047930 177 MLGIYGMGGIGKTTLAKEVARKAEN 201 (395)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~~~ 201 (395)
.+.|+|.+|+|||||++.+++....
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~~ 26 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKE 26 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4789999999999999999877543
No 492
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=94.99 E-value=0.11 Score=49.91 Aligned_cols=87 Identities=21% Similarity=0.357 Sum_probs=48.3
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCc-CCHHHHHHHHHHHhCCC--------ccccchh----
Q 047930 174 DVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQI-QDIRKIQGEFADKLGLT--------LHEETES---- 240 (395)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~--------~~~~~~~---- 240 (395)
.-..++|.|..|+|||||++.+...... +..+...+... ....++..+.+.+-+.. .++....
T Consensus 136 ~Gqri~I~G~sG~GKTtLl~~i~~~~~~----~~gvi~~~Ger~~ev~e~~~~~l~~~~~~~~v~v~~tsd~~~~~r~~~ 211 (413)
T TIGR03497 136 KGQRVGIFAGSGVGKSTLLGMIARNAKA----DINVIALIGERGREVRDFIEKDLGEEGLKRSVVVVATSDQPALMRLKA 211 (413)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC----CeEEEEEEccchHHHHHHHHHHhcccccceEEEEEECCCCCHHHHHHH
Confidence 3457899999999999999988865432 22233333332 23444554444321111 1111100
Q ss_pred -hhHHHHHHHHh-cCCeEEEEEeCCC
Q 047930 241 -GRARSLCNRLK-KEKRILVILDNIW 264 (395)
Q Consensus 241 -~~~~~l~~~l~-~~kr~LlVlDdv~ 264 (395)
.....+.+++. ++++.||++||+-
T Consensus 212 ~~~a~tiAEyfr~~G~~Vll~~Dslt 237 (413)
T TIGR03497 212 AFTATAIAEYFRDQGKDVLLMMDSVT 237 (413)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEcCcH
Confidence 11223445542 5899999999984
No 493
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=94.98 E-value=0.13 Score=51.29 Aligned_cols=85 Identities=16% Similarity=0.178 Sum_probs=53.2
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCccc----------------cc
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFADKLGLTLHE----------------ET 238 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~----------------~~ 238 (395)
-.++.|.|.+|+|||+++.++......+ -..++|++.... ..++.+.+ ..++.+... ..
T Consensus 273 g~~~li~G~~G~GKT~l~~~~~~~~~~~--g~~~~yis~e~~--~~~i~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~~~ 347 (509)
T PRK09302 273 GSIILVSGATGTGKTLLASKFAEAACRR--GERCLLFAFEES--RAQLIRNA-RSWGIDLEKMEEKGLLKIICARPESYG 347 (509)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhC--CCcEEEEEecCC--HHHHHHHH-HHcCCChHHHhhcCCceeecCCcccCC
Confidence 4678899999999999999998775433 356788877553 45554443 344432111 01
Q ss_pred hhhhHHHHHHHHhcCCeEEEEEeCCC
Q 047930 239 ESGRARSLCNRLKKEKRILVILDNIW 264 (395)
Q Consensus 239 ~~~~~~~l~~~l~~~kr~LlVlDdv~ 264 (395)
....+..+.+.+...+.-++|+|.+.
T Consensus 348 ~~~~~~~i~~~i~~~~~~~vVIDslt 373 (509)
T PRK09302 348 LEDHLIIIKREIEEFKPSRVAIDPLS 373 (509)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcCHH
Confidence 12234455555554455689999984
No 494
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=94.98 E-value=0.019 Score=51.49 Aligned_cols=24 Identities=38% Similarity=0.726 Sum_probs=21.2
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhc
Q 047930 177 MLGIYGMGGIGKTTLAKEVARKAE 200 (395)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~~ 200 (395)
.|.++|++|+||||+|+.+.....
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~ 24 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLS 24 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH
Confidence 378999999999999999998764
No 495
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=94.97 E-value=0.024 Score=47.64 Aligned_cols=25 Identities=32% Similarity=0.377 Sum_probs=21.8
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhc
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARKAE 200 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (395)
+.|.|+|+.|+||||+++.+.+...
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg 27 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALG 27 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 3578999999999999999998764
No 496
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=94.95 E-value=0.025 Score=49.41 Aligned_cols=26 Identities=35% Similarity=0.698 Sum_probs=21.9
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhcc
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARKAEN 201 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~ 201 (395)
++|+|.|-||+||||++..+......
T Consensus 1 ~~iav~gKGGvGKTt~~~nLA~~la~ 26 (212)
T cd02117 1 RQIAIYGKGGIGKSTTSQNLSAALAE 26 (212)
T ss_pred CEEEEECCCcCcHHHHHHHHHHHHHH
Confidence 47899999999999999988776543
No 497
>PRK14532 adenylate kinase; Provisional
Probab=94.94 E-value=0.022 Score=48.66 Aligned_cols=22 Identities=32% Similarity=0.428 Sum_probs=19.9
Q ss_pred EEEEecCCCcHHHHHHHHHHHh
Q 047930 178 LGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 178 i~I~G~~GiGKTtLa~~v~~~~ 199 (395)
|.|.|++|+||||+|+.+....
T Consensus 3 i~~~G~pGsGKsT~a~~la~~~ 24 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVEER 24 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7789999999999999998754
No 498
>PLN02348 phosphoribulokinase
Probab=94.94 E-value=0.027 Score=53.26 Aligned_cols=29 Identities=17% Similarity=0.346 Sum_probs=25.5
Q ss_pred CCCceEEEEEecCCCcHHHHHHHHHHHhc
Q 047930 172 NPDVNMLGIYGMGGIGKTTLAKEVARKAE 200 (395)
Q Consensus 172 ~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (395)
.+++.+|+|.|.+|+||||+|+.+.+...
T Consensus 46 ~~~p~IIGIaG~SGSGKSTfA~~L~~~Lg 74 (395)
T PLN02348 46 DDGTVVIGLAADSGCGKSTFMRRLTSVFG 74 (395)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 35678999999999999999999998764
No 499
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=94.90 E-value=0.071 Score=45.94 Aligned_cols=22 Identities=41% Similarity=0.551 Sum_probs=20.4
Q ss_pred eEEEEEecCCCcHHHHHHHHHH
Q 047930 176 NMLGIYGMGGIGKTTLAKEVAR 197 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~ 197 (395)
.+|+|+|+.|+||||.++.+.+
T Consensus 3 ~iIglTG~igsGKStva~~~~~ 24 (201)
T COG0237 3 LIIGLTGGIGSGKSTVAKILAE 24 (201)
T ss_pred eEEEEecCCCCCHHHHHHHHHH
Confidence 5899999999999999998876
No 500
>PRK06761 hypothetical protein; Provisional
Probab=94.89 E-value=0.025 Score=51.37 Aligned_cols=26 Identities=31% Similarity=0.431 Sum_probs=23.3
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhcc
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARKAEN 201 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~ 201 (395)
++|.|.|++|+||||+++.+++....
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L~~ 29 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDILSQ 29 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCc
Confidence 57999999999999999999988753
Done!