Query 047930
Match_columns 395
No_of_seqs 310 out of 2473
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 07:41:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047930.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047930hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 8.9E-36 3E-40 296.9 21.0 226 157-395 131-371 (549)
2 3sfz_A APAF-1, apoptotic pepti 100.0 9.6E-31 3.3E-35 284.6 17.5 236 150-395 120-372 (1249)
3 1vt4_I APAF-1 related killer D 100.0 1.1E-29 3.8E-34 258.9 9.8 210 156-395 130-363 (1221)
4 1z6t_A APAF-1, apoptotic prote 100.0 7.2E-28 2.5E-32 242.6 18.4 231 152-395 122-372 (591)
5 2qen_A Walker-type ATPase; unk 99.7 6.5E-16 2.2E-20 144.8 16.4 198 150-357 8-249 (350)
6 2fna_A Conserved hypothetical 99.7 1.4E-15 4.9E-20 142.7 16.7 196 150-358 9-254 (357)
7 3qfl_A MLA10; coiled-coil, (CC 99.6 3.6E-15 1.2E-19 115.5 7.7 78 9-95 3-81 (115)
8 1w5s_A Origin recognition comp 99.6 4.7E-14 1.6E-18 135.2 16.8 219 154-372 22-293 (412)
9 1njg_A DNA polymerase III subu 99.5 4.2E-13 1.4E-17 118.6 16.7 200 150-357 19-231 (250)
10 2qby_B CDC6 homolog 3, cell di 99.5 5.3E-13 1.8E-17 126.6 17.0 215 154-372 20-270 (384)
11 2chg_A Replication factor C sm 99.5 5.9E-13 2E-17 116.0 15.9 192 150-357 13-207 (226)
12 2qby_A CDC6 homolog 1, cell di 99.5 5.9E-13 2E-17 126.2 14.9 200 154-353 20-244 (386)
13 2v1u_A Cell division control p 99.4 2.7E-12 9.3E-17 121.7 17.5 216 154-372 19-276 (387)
14 1fnn_A CDC6P, cell division co 99.3 3.6E-11 1.2E-15 114.1 17.6 219 154-373 17-275 (389)
15 1sxj_B Activator 1 37 kDa subu 99.3 1.4E-11 4.9E-16 113.8 13.2 192 150-356 17-212 (323)
16 1iqp_A RFCS; clamp loader, ext 99.2 5.3E-11 1.8E-15 110.1 10.6 190 150-357 21-215 (327)
17 2chq_A Replication factor C sm 99.1 7.1E-10 2.4E-14 102.1 14.3 188 150-355 13-205 (319)
18 3te6_A Regulatory protein SIR3 99.0 7.6E-09 2.6E-13 94.5 16.9 169 155-324 21-212 (318)
19 1jr3_A DNA polymerase III subu 99.0 3.7E-09 1.3E-13 99.6 15.1 196 151-354 13-221 (373)
20 1hqc_A RUVB; extended AAA-ATPa 99.0 4.3E-09 1.5E-13 97.2 13.2 192 152-373 10-239 (324)
21 1jbk_A CLPB protein; beta barr 99.0 2.1E-09 7.2E-14 90.9 10.1 154 152-319 20-194 (195)
22 3h4m_A Proteasome-activating n 98.9 3.7E-08 1.3E-12 89.1 15.5 201 151-373 14-259 (285)
23 1sxj_D Activator 1 41 kDa subu 98.9 8.2E-09 2.8E-13 96.4 10.8 198 150-353 33-234 (353)
24 1sxj_A Activator 1 95 kDa subu 98.8 2.5E-08 8.7E-13 98.0 13.7 208 149-370 34-272 (516)
25 1d2n_A N-ethylmaleimide-sensit 98.8 1.9E-07 6.4E-12 83.9 17.6 182 172-378 61-267 (272)
26 1sxj_E Activator 1 40 kDa subu 98.8 3.1E-08 1.1E-12 92.6 12.2 197 150-355 10-238 (354)
27 3pvs_A Replication-associated 98.8 1.2E-07 4.1E-12 91.2 15.5 182 150-356 22-217 (447)
28 2qz4_A Paraplegin; AAA+, SPG7, 98.8 3.5E-07 1.2E-11 81.5 17.7 182 153-354 5-222 (262)
29 3bos_A Putative DNA replicatio 98.8 1.5E-08 5.2E-13 89.0 8.5 174 153-354 27-217 (242)
30 3u61_B DNA polymerase accessor 98.7 6.8E-08 2.3E-12 89.1 11.9 182 150-353 22-215 (324)
31 3d8b_A Fidgetin-like protein 1 98.7 7.7E-07 2.6E-11 83.2 18.2 184 151-355 81-296 (357)
32 3eie_A Vacuolar protein sortin 98.7 7.2E-07 2.4E-11 82.2 17.4 183 151-354 15-228 (322)
33 1sxj_C Activator 1 40 kDa subu 98.7 1.5E-07 5.2E-12 87.5 12.9 185 150-351 21-209 (340)
34 3pfi_A Holliday junction ATP-d 98.7 2.4E-07 8.1E-12 86.0 14.2 193 151-373 26-255 (338)
35 1xwi_A SKD1 protein; VPS4B, AA 98.7 1.8E-06 6.3E-11 79.4 19.8 183 152-354 10-223 (322)
36 1a5t_A Delta prime, HOLB; zinc 98.7 6E-07 2E-11 83.2 16.4 170 160-353 8-204 (334)
37 3uk6_A RUVB-like 2; hexameric 98.6 3.8E-07 1.3E-11 85.6 14.3 214 153-371 43-329 (368)
38 3vfd_A Spastin; ATPase, microt 98.6 2E-06 6.9E-11 81.4 18.7 185 150-355 111-327 (389)
39 3syl_A Protein CBBX; photosynt 98.6 1E-07 3.4E-12 87.3 9.1 154 155-324 32-218 (309)
40 2z4s_A Chromosomal replication 98.6 5.6E-07 1.9E-11 86.5 14.3 203 153-373 104-333 (440)
41 3b9p_A CG5977-PA, isoform A; A 98.6 3.3E-06 1.1E-10 76.7 18.2 184 151-355 18-234 (297)
42 2zan_A Vacuolar protein sortin 98.6 3.3E-06 1.1E-10 81.2 19.0 184 151-354 131-345 (444)
43 2qp9_X Vacuolar protein sortin 98.6 1.8E-06 6E-11 80.7 16.6 183 151-354 48-261 (355)
44 4b4t_J 26S protease regulatory 98.5 2.5E-06 8.7E-11 79.8 16.6 200 151-372 145-389 (405)
45 3pxg_A Negative regulator of g 98.5 7.3E-07 2.5E-11 86.5 13.0 151 152-324 178-339 (468)
46 4b4t_L 26S protease subunit RP 98.5 2.2E-06 7.5E-11 81.5 15.1 199 153-373 180-423 (437)
47 4b4t_H 26S protease regulatory 98.4 5.4E-06 1.9E-10 78.7 16.1 198 153-372 208-450 (467)
48 4b4t_M 26S protease regulatory 98.4 1.6E-06 5.3E-11 82.4 12.4 203 150-374 177-424 (434)
49 4b4t_I 26S protease regulatory 98.4 4.9E-06 1.7E-10 78.2 15.4 200 151-372 179-423 (437)
50 1l8q_A Chromosomal replication 98.4 1.4E-06 4.9E-11 80.2 11.4 166 163-349 23-203 (324)
51 3cf0_A Transitional endoplasmi 98.4 1.2E-05 4.1E-10 73.2 17.4 176 152-349 13-223 (301)
52 2p65_A Hypothetical protein PF 98.4 5.7E-07 2E-11 75.4 7.9 49 152-200 20-68 (187)
53 1qvr_A CLPB protein; coiled co 98.4 1.5E-06 5.2E-11 90.6 12.1 158 151-323 167-345 (854)
54 1lv7_A FTSH; alpha/beta domain 98.4 2.1E-05 7.1E-10 69.8 17.1 200 151-372 9-252 (257)
55 4b4t_K 26S protease regulatory 98.3 1.1E-05 3.9E-10 76.4 14.0 199 151-371 169-413 (428)
56 3pxi_A Negative regulator of g 98.3 3.6E-06 1.2E-10 86.7 11.3 151 152-324 178-339 (758)
57 1r6b_X CLPA protein; AAA+, N-t 98.2 1.3E-05 4.3E-10 82.7 15.0 158 152-323 184-362 (758)
58 2gno_A DNA polymerase III, gam 98.2 5.6E-06 1.9E-10 75.4 10.5 144 160-323 3-152 (305)
59 2r62_A Cell division protease 98.2 5.8E-07 2E-11 80.4 3.5 174 153-348 10-219 (268)
60 3n70_A Transport activator; si 98.2 1.1E-06 3.8E-11 70.9 3.9 46 155-200 2-49 (145)
61 3ec2_A DNA replication protein 98.2 1.4E-06 4.8E-11 72.9 4.7 116 159-291 19-142 (180)
62 1in4_A RUVB, holliday junction 98.1 0.00011 3.6E-09 67.9 17.2 194 151-373 22-251 (334)
63 2ce7_A Cell division protein F 98.1 5.9E-05 2E-09 72.7 15.6 199 153-373 15-257 (476)
64 3hu3_A Transitional endoplasmi 98.1 7.5E-05 2.6E-09 72.5 16.3 179 153-353 203-414 (489)
65 1ofh_A ATP-dependent HSL prote 98.1 1.4E-05 4.8E-10 72.8 10.3 46 155-200 16-75 (310)
66 2w58_A DNAI, primosome compone 98.1 5.5E-06 1.9E-10 70.6 6.8 112 162-291 37-158 (202)
67 4fcw_A Chaperone protein CLPB; 98.0 1.3E-05 4.5E-10 73.1 9.1 104 156-266 19-131 (311)
68 2c9o_A RUVB-like 1; hexameric 98.0 8.9E-05 3.1E-09 71.5 13.6 114 256-371 297-436 (456)
69 3cf2_A TER ATPase, transitiona 97.9 4.7E-05 1.6E-09 77.7 11.7 153 174-348 237-408 (806)
70 1ixz_A ATP-dependent metallopr 97.8 0.00046 1.6E-08 60.8 14.1 148 178-347 52-221 (254)
71 2bjv_A PSP operon transcriptio 97.7 3.6E-05 1.2E-09 68.5 6.4 60 154-215 6-67 (265)
72 3m6a_A ATP-dependent protease 97.7 0.0002 6.7E-09 70.6 11.8 156 156-323 83-266 (543)
73 3co5_A Putative two-component 97.7 6.6E-06 2.2E-10 66.1 1.0 45 155-199 5-51 (143)
74 1ojl_A Transcriptional regulat 97.7 0.00017 5.9E-09 65.5 9.7 46 155-200 3-50 (304)
75 3pxi_A Negative regulator of g 97.6 4.9E-05 1.7E-09 78.2 6.3 148 155-323 492-675 (758)
76 1iy2_A ATP-dependent metallopr 97.6 0.0015 5.1E-08 58.4 15.1 148 178-347 76-245 (278)
77 2x8a_A Nuclear valosin-contain 97.6 0.0021 7E-08 57.4 15.7 127 178-324 47-192 (274)
78 2dhr_A FTSH; AAA+ protein, hex 97.5 0.00064 2.2E-08 65.9 12.3 197 153-374 30-273 (499)
79 2r44_A Uncharacterized protein 97.5 0.00011 3.8E-09 67.6 6.5 151 154-324 27-199 (331)
80 1r6b_X CLPA protein; AAA+, N-t 97.5 0.00025 8.4E-09 73.0 9.4 159 155-323 459-666 (758)
81 1n0w_A DNA repair protein RAD5 97.4 0.0012 4E-08 57.5 10.9 91 175-266 24-131 (243)
82 1ypw_A Transitional endoplasmi 97.3 0.0007 2.4E-08 69.9 10.2 153 153-325 203-387 (806)
83 1jr3_D DNA polymerase III, del 97.3 0.0026 8.7E-08 58.7 12.6 159 173-353 16-184 (343)
84 3t15_A Ribulose bisphosphate c 97.3 0.0002 6.7E-09 64.8 4.4 27 174-200 35-61 (293)
85 2w0m_A SSO2452; RECA, SSPF, un 97.2 0.00071 2.4E-08 58.5 7.8 46 176-225 24-69 (235)
86 1um8_A ATP-dependent CLP prote 97.2 0.0022 7.7E-08 60.0 11.7 26 175-200 72-97 (376)
87 1qvr_A CLPB protein; coiled co 97.2 0.00037 1.3E-08 72.6 6.7 46 155-200 559-613 (854)
88 3io5_A Recombination and repai 97.2 0.0025 8.5E-08 57.5 11.1 86 176-266 29-123 (333)
89 2vhj_A Ntpase P4, P4; non- hyd 97.2 0.00072 2.5E-08 61.2 7.3 69 176-266 124-194 (331)
90 2cvh_A DNA repair and recombin 97.2 0.0025 8.7E-08 54.4 10.5 44 175-223 20-63 (220)
91 1v5w_A DMC1, meiotic recombina 97.2 0.0028 9.7E-08 58.5 11.3 90 175-265 122-230 (343)
92 3hr8_A Protein RECA; alpha and 97.1 0.0022 7.5E-08 59.3 10.3 84 175-265 61-150 (356)
93 2z43_A DNA repair and recombin 97.1 0.0026 8.8E-08 58.3 10.4 90 175-265 107-214 (324)
94 3cf2_A TER ATPase, transitiona 97.1 0.00061 2.1E-08 69.6 6.4 171 154-346 477-682 (806)
95 2i1q_A DNA repair and recombin 97.1 0.0032 1.1E-07 57.6 10.5 90 175-265 98-215 (322)
96 2kjq_A DNAA-related protein; s 97.0 0.00072 2.5E-08 54.4 5.4 40 174-215 35-74 (149)
97 3lda_A DNA repair protein RAD5 97.0 0.0032 1.1E-07 59.3 10.6 90 175-265 178-284 (400)
98 2qgz_A Helicase loader, putati 97.0 0.00085 2.9E-08 61.0 6.3 53 159-213 133-189 (308)
99 2zr9_A Protein RECA, recombina 96.9 0.0039 1.3E-07 57.7 10.0 84 175-265 61-150 (349)
100 4a74_A DNA repair and recombin 96.9 0.0086 2.9E-07 51.4 11.3 90 175-265 25-136 (231)
101 1xp8_A RECA protein, recombina 96.9 0.005 1.7E-07 57.2 10.2 84 175-265 74-163 (366)
102 1rz3_A Hypothetical protein rb 96.8 0.0015 5.3E-08 55.2 5.6 42 159-200 3-47 (201)
103 1u94_A RECA protein, recombina 96.8 0.0057 1.9E-07 56.6 9.6 84 175-265 63-152 (356)
104 3c8u_A Fructokinase; YP_612366 96.6 0.0022 7.5E-08 54.6 5.4 40 161-200 6-47 (208)
105 1sky_E F1-ATPase, F1-ATP synth 96.6 0.0054 1.8E-07 58.5 8.4 87 177-264 153-255 (473)
106 2px0_A Flagellar biosynthesis 96.6 0.0088 3E-07 53.9 9.3 57 174-231 104-161 (296)
107 1pzn_A RAD51, DNA repair and r 96.6 0.01 3.5E-07 54.8 10.0 92 174-266 130-243 (349)
108 3bh0_A DNAB-like replicative h 96.6 0.02 6.7E-07 52.1 11.7 62 162-229 57-118 (315)
109 1qhx_A CPT, protein (chloramph 96.5 0.0017 5.9E-08 53.6 3.7 25 176-200 4-28 (178)
110 3tqc_A Pantothenate kinase; bi 96.5 0.016 5.4E-07 52.7 10.2 27 174-200 91-117 (321)
111 3ice_A Transcription terminati 96.4 0.0031 1.1E-07 58.4 5.3 52 165-217 163-216 (422)
112 2ehv_A Hypothetical protein PH 96.4 0.009 3.1E-07 52.0 8.2 22 176-197 31-52 (251)
113 3kb2_A SPBC2 prophage-derived 96.4 0.002 6.8E-08 52.7 3.6 25 176-200 2-26 (173)
114 1g8p_A Magnesium-chelatase 38 96.4 0.0016 5.6E-08 60.1 3.3 50 151-200 21-70 (350)
115 3lw7_A Adenylate kinase relate 96.4 0.0019 6.4E-08 52.9 3.2 20 176-195 2-21 (179)
116 2orw_A Thymidine kinase; TMTK, 96.3 0.00041 1.4E-08 58.0 -1.1 109 176-292 4-113 (184)
117 1kgd_A CASK, peripheral plasma 96.3 0.0024 8.3E-08 53.0 3.5 24 176-199 6-29 (180)
118 1ly1_A Polynucleotide kinase; 96.3 0.0026 9.1E-08 52.4 3.7 22 176-197 3-24 (181)
119 2b8t_A Thymidine kinase; deoxy 96.3 0.0015 5E-08 56.3 2.1 109 174-291 11-125 (223)
120 1zp6_A Hypothetical protein AT 96.3 0.0029 1E-07 52.8 3.9 24 175-198 9-32 (191)
121 3vaa_A Shikimate kinase, SK; s 96.2 0.0029 1E-07 53.4 3.9 26 175-200 25-50 (199)
122 2dr3_A UPF0273 protein PH0284; 96.2 0.018 6.2E-07 49.9 9.1 46 176-225 24-69 (247)
123 1kag_A SKI, shikimate kinase I 96.2 0.0024 8.3E-08 52.3 3.1 25 176-200 5-29 (173)
124 3trf_A Shikimate kinase, SK; a 96.2 0.003 1E-07 52.4 3.7 26 175-200 5-30 (185)
125 1fx0_B ATP synthase beta chain 96.2 0.023 7.9E-07 54.3 10.1 88 176-264 166-276 (498)
126 3uie_A Adenylyl-sulfate kinase 96.2 0.0034 1.2E-07 53.0 3.9 28 173-200 23-50 (200)
127 2rhm_A Putative kinase; P-loop 96.1 0.004 1.4E-07 52.0 4.2 25 175-199 5-29 (193)
128 2hf9_A Probable hydrogenase ni 96.1 0.0052 1.8E-07 52.7 5.0 37 164-200 27-63 (226)
129 1nks_A Adenylate kinase; therm 96.1 0.0038 1.3E-07 52.1 3.8 25 176-200 2-26 (194)
130 3dm5_A SRP54, signal recogniti 96.1 0.037 1.3E-06 52.5 11.0 28 174-201 99-126 (443)
131 3t61_A Gluconokinase; PSI-biol 96.1 0.0032 1.1E-07 53.2 3.2 25 175-199 18-42 (202)
132 3tau_A Guanylate kinase, GMP k 96.0 0.0043 1.5E-07 52.8 3.9 27 174-200 7-33 (208)
133 1ex7_A Guanylate kinase; subst 96.0 0.0036 1.2E-07 52.2 3.2 25 176-200 2-26 (186)
134 3iij_A Coilin-interacting nucl 96.0 0.0039 1.3E-07 51.6 3.4 26 175-200 11-36 (180)
135 3fwy_A Light-independent proto 96.0 0.0039 1.3E-07 56.7 3.7 40 173-214 46-85 (314)
136 1kht_A Adenylate kinase; phosp 96.0 0.0043 1.5E-07 51.7 3.7 25 176-200 4-28 (192)
137 2qor_A Guanylate kinase; phosp 96.0 0.0039 1.3E-07 52.8 3.4 25 175-199 12-36 (204)
138 3tr0_A Guanylate kinase, GMP k 96.0 0.0041 1.4E-07 52.5 3.5 24 176-199 8-31 (205)
139 4eun_A Thermoresistant glucoki 96.0 0.0047 1.6E-07 52.1 3.9 27 173-199 27-53 (200)
140 2ck3_D ATP synthase subunit be 96.0 0.041 1.4E-06 52.4 10.6 88 176-264 154-263 (482)
141 3kl4_A SRP54, signal recogniti 96.0 0.029 1E-06 53.1 9.6 28 174-201 96-123 (433)
142 2yvu_A Probable adenylyl-sulfa 96.0 0.0057 2E-07 50.8 4.3 28 174-201 12-39 (186)
143 2ze6_A Isopentenyl transferase 96.0 0.0045 1.5E-07 54.5 3.8 25 176-200 2-26 (253)
144 2wsm_A Hydrogenase expression/ 96.0 0.0055 1.9E-07 52.4 4.2 38 163-200 18-55 (221)
145 3a00_A Guanylate kinase, GMP k 96.0 0.0037 1.3E-07 52.2 3.0 25 176-200 2-26 (186)
146 1knq_A Gluconate kinase; ALFA/ 95.9 0.005 1.7E-07 50.6 3.8 25 175-199 8-32 (175)
147 1odf_A YGR205W, hypothetical 3 95.9 0.0096 3.3E-07 53.4 5.9 56 172-227 28-84 (290)
148 1g5t_A COB(I)alamin adenosyltr 95.9 0.01 3.5E-07 49.6 5.5 116 175-292 28-163 (196)
149 1uf9_A TT1252 protein; P-loop, 95.9 0.0058 2E-07 51.4 4.1 26 173-198 6-31 (203)
150 3asz_A Uridine kinase; cytidin 95.9 0.0054 1.9E-07 52.1 3.9 27 174-200 5-31 (211)
151 1via_A Shikimate kinase; struc 95.9 0.0044 1.5E-07 51.0 3.2 24 177-200 6-29 (175)
152 3nbx_X ATPase RAVA; AAA+ ATPas 95.9 0.0038 1.3E-07 60.5 3.2 44 155-200 23-66 (500)
153 3cmu_A Protein RECA, recombina 95.9 0.019 6.4E-07 64.0 8.9 84 174-264 1426-1515(2050)
154 2xxa_A Signal recognition part 95.9 0.041 1.4E-06 52.3 10.3 29 174-202 99-127 (433)
155 1ye8_A Protein THEP1, hypothet 95.9 0.0051 1.7E-07 51.0 3.5 24 177-200 2-25 (178)
156 2jaq_A Deoxyguanosine kinase; 95.9 0.0052 1.8E-07 51.8 3.7 24 177-200 2-25 (205)
157 2j41_A Guanylate kinase; GMP, 95.9 0.0057 1.9E-07 51.7 3.9 25 175-199 6-30 (207)
158 2bdt_A BH3686; alpha-beta prot 95.9 0.0052 1.8E-07 51.2 3.6 22 176-197 3-24 (189)
159 1y63_A LMAJ004144AAA protein; 95.9 0.0061 2.1E-07 50.7 4.0 25 174-198 9-33 (184)
160 2c95_A Adenylate kinase 1; tra 95.9 0.0062 2.1E-07 50.9 4.1 26 175-200 9-34 (196)
161 1ukz_A Uridylate kinase; trans 95.9 0.0065 2.2E-07 51.2 4.2 26 174-199 14-39 (203)
162 3aez_A Pantothenate kinase; tr 95.8 0.019 6.6E-07 52.0 7.5 43 173-215 88-130 (312)
163 3hws_A ATP-dependent CLP prote 95.8 0.0089 3E-07 55.6 5.4 45 156-200 17-76 (363)
164 1gvn_B Zeta; postsegregational 95.8 0.0083 2.8E-07 53.8 5.1 26 174-199 32-57 (287)
165 1lvg_A Guanylate kinase, GMP k 95.8 0.0046 1.6E-07 52.2 3.1 24 176-199 5-28 (198)
166 1tev_A UMP-CMP kinase; ploop, 95.8 0.006 2.1E-07 50.9 3.8 25 175-199 3-27 (196)
167 1xjc_A MOBB protein homolog; s 95.8 0.0067 2.3E-07 49.6 3.9 28 174-201 3-30 (169)
168 3ney_A 55 kDa erythrocyte memb 95.8 0.0061 2.1E-07 51.3 3.7 26 174-199 18-43 (197)
169 1zuh_A Shikimate kinase; alpha 95.8 0.0061 2.1E-07 49.7 3.6 27 174-200 6-32 (168)
170 2iyv_A Shikimate kinase, SK; t 95.7 0.0052 1.8E-07 51.0 3.1 25 176-200 3-27 (184)
171 2if2_A Dephospho-COA kinase; a 95.7 0.0064 2.2E-07 51.3 3.6 22 176-197 2-23 (204)
172 1cke_A CK, MSSA, protein (cyti 95.7 0.0064 2.2E-07 52.2 3.7 24 176-199 6-29 (227)
173 2bwj_A Adenylate kinase 5; pho 95.7 0.0071 2.4E-07 50.7 3.8 26 175-200 12-37 (199)
174 2plr_A DTMP kinase, probable t 95.7 0.0075 2.6E-07 51.1 4.0 26 176-201 5-30 (213)
175 3a4m_A L-seryl-tRNA(SEC) kinas 95.7 0.0073 2.5E-07 53.3 4.0 25 175-199 4-28 (260)
176 3cm0_A Adenylate kinase; ATP-b 95.7 0.0072 2.5E-07 50.1 3.8 24 176-199 5-28 (186)
177 4a1f_A DNAB helicase, replicat 95.7 0.052 1.8E-06 49.6 9.7 61 162-228 35-95 (338)
178 2cdn_A Adenylate kinase; phosp 95.7 0.0083 2.8E-07 50.5 4.1 27 174-200 19-45 (201)
179 1e6c_A Shikimate kinase; phosp 95.7 0.0061 2.1E-07 49.9 3.2 25 176-200 3-27 (173)
180 4gp7_A Metallophosphoesterase; 95.7 0.0057 2E-07 50.2 2.9 22 175-196 9-30 (171)
181 2bbw_A Adenylate kinase 4, AK4 95.6 0.0075 2.6E-07 52.7 3.9 26 175-200 27-52 (246)
182 2qt1_A Nicotinamide riboside k 95.6 0.0076 2.6E-07 51.0 3.8 24 175-198 21-44 (207)
183 1vma_A Cell division protein F 95.6 0.039 1.3E-06 49.8 8.6 38 174-213 103-140 (306)
184 3umf_A Adenylate kinase; rossm 95.6 0.0086 2.9E-07 51.2 4.0 28 173-200 27-54 (217)
185 1znw_A Guanylate kinase, GMP k 95.6 0.0069 2.4E-07 51.4 3.4 25 175-199 20-44 (207)
186 1qf9_A UMP/CMP kinase, protein 95.6 0.0084 2.9E-07 49.9 3.9 26 175-200 6-31 (194)
187 2vli_A Antibiotic resistance p 95.6 0.0052 1.8E-07 50.8 2.5 26 175-200 5-30 (183)
188 1nn5_A Similar to deoxythymidy 95.6 0.0092 3.2E-07 50.7 4.1 32 175-207 9-40 (215)
189 2ga8_A Hypothetical 39.9 kDa p 95.6 0.015 5.1E-07 53.4 5.7 30 171-200 20-49 (359)
190 2wwf_A Thymidilate kinase, put 95.5 0.0095 3.2E-07 50.5 4.0 32 175-207 10-41 (212)
191 1z6g_A Guanylate kinase; struc 95.5 0.0069 2.4E-07 51.9 3.1 25 175-199 23-47 (218)
192 1jjv_A Dephospho-COA kinase; P 95.5 0.0076 2.6E-07 51.0 3.3 22 176-197 3-24 (206)
193 4akg_A Glutathione S-transfera 95.5 0.058 2E-06 62.1 11.2 138 176-323 1268-1431(2695)
194 2pt5_A Shikimate kinase, SK; a 95.5 0.0089 3.1E-07 48.6 3.6 24 177-200 2-25 (168)
195 2pbr_A DTMP kinase, thymidylat 95.5 0.0089 3E-07 49.8 3.7 24 177-200 2-25 (195)
196 3e70_C DPA, signal recognition 95.5 0.12 4.1E-06 47.1 11.4 29 173-201 127-155 (328)
197 1aky_A Adenylate kinase; ATP:A 95.5 0.0094 3.2E-07 51.0 3.9 26 175-200 4-29 (220)
198 1zd8_A GTP:AMP phosphotransfer 95.5 0.0092 3.1E-07 51.4 3.8 25 175-199 7-31 (227)
199 1zak_A Adenylate kinase; ATP:A 95.5 0.0091 3.1E-07 51.2 3.7 27 174-200 4-30 (222)
200 1s96_A Guanylate kinase, GMP k 95.5 0.0087 3E-07 51.3 3.5 26 175-200 16-41 (219)
201 2j37_W Signal recognition part 95.4 0.16 5.5E-06 49.1 12.6 28 174-201 100-127 (504)
202 2jeo_A Uridine-cytidine kinase 95.4 0.011 3.6E-07 51.7 4.0 26 174-199 24-49 (245)
203 1rj9_A FTSY, signal recognitio 95.4 0.0096 3.3E-07 53.8 3.8 27 174-200 101-127 (304)
204 1gtv_A TMK, thymidylate kinase 95.4 0.0055 1.9E-07 52.1 2.1 24 177-200 2-25 (214)
205 3tlx_A Adenylate kinase 2; str 95.4 0.02 6.7E-07 50.0 5.6 27 173-199 27-53 (243)
206 1htw_A HI0065; nucleotide-bind 95.4 0.01 3.5E-07 48.0 3.5 26 174-199 32-57 (158)
207 4e22_A Cytidylate kinase; P-lo 95.4 0.011 3.8E-07 51.9 4.0 27 174-200 26-52 (252)
208 1uj2_A Uridine-cytidine kinase 95.4 0.011 3.7E-07 51.9 3.8 28 173-200 20-47 (252)
209 2q6t_A DNAB replication FORK h 95.3 0.11 3.7E-06 49.6 11.1 62 162-228 189-250 (444)
210 2r6a_A DNAB helicase, replicat 95.3 0.066 2.3E-06 51.3 9.5 61 162-227 192-252 (454)
211 2v54_A DTMP kinase, thymidylat 95.3 0.012 4.1E-07 49.5 3.8 25 175-199 4-28 (204)
212 2z0h_A DTMP kinase, thymidylat 95.3 0.011 3.9E-07 49.3 3.6 24 177-200 2-25 (197)
213 2grj_A Dephospho-COA kinase; T 95.3 0.012 4.2E-07 49.3 3.8 27 173-199 10-36 (192)
214 3k1j_A LON protease, ATP-depen 95.3 0.012 4.2E-07 58.6 4.4 49 150-200 37-85 (604)
215 2p5t_B PEZT; postsegregational 95.2 0.014 4.8E-07 51.2 4.2 26 174-199 31-56 (253)
216 3fb4_A Adenylate kinase; psych 95.2 0.012 4E-07 50.1 3.6 24 177-200 2-25 (216)
217 1j8m_F SRP54, signal recogniti 95.2 0.066 2.3E-06 48.1 8.6 87 175-263 98-189 (297)
218 2f1r_A Molybdopterin-guanine d 95.2 0.01 3.5E-07 48.7 3.0 26 176-201 3-28 (171)
219 1m7g_A Adenylylsulfate kinase; 95.2 0.014 5E-07 49.5 4.0 28 173-200 23-50 (211)
220 3upu_A ATP-dependent DNA helic 95.2 0.031 1E-06 53.7 6.7 42 160-202 31-72 (459)
221 2pez_A Bifunctional 3'-phospho 95.2 0.014 4.9E-07 48.0 3.8 26 175-200 5-30 (179)
222 2c61_A A-type ATP synthase non 95.2 0.024 8.3E-07 53.9 5.8 87 177-263 154-258 (469)
223 1np6_A Molybdopterin-guanine d 95.1 0.014 4.9E-07 48.0 3.7 26 175-200 6-31 (174)
224 1vht_A Dephospho-COA kinase; s 95.1 0.015 5E-07 49.7 4.0 23 175-197 4-26 (218)
225 3dl0_A Adenylate kinase; phosp 95.1 0.013 4.5E-07 49.9 3.6 23 177-199 2-24 (216)
226 2onk_A Molybdate/tungstate ABC 95.1 0.013 4.5E-07 51.0 3.6 23 176-198 25-47 (240)
227 3vr4_D V-type sodium ATPase su 95.1 0.037 1.3E-06 52.4 6.7 87 178-264 154-258 (465)
228 1ls1_A Signal recognition part 95.1 0.093 3.2E-06 47.1 9.2 88 174-263 97-189 (295)
229 2f6r_A COA synthase, bifunctio 95.1 0.016 5.3E-07 51.8 4.0 25 173-197 73-97 (281)
230 3l0o_A Transcription terminati 95.0 0.0083 2.8E-07 55.5 2.1 51 165-216 164-216 (427)
231 2i3b_A HCR-ntpase, human cance 95.0 0.012 4.2E-07 49.1 3.0 24 177-200 3-26 (189)
232 3tif_A Uncharacterized ABC tra 95.0 0.013 4.4E-07 50.9 3.2 23 176-198 32-54 (235)
233 3nwj_A ATSK2; P loop, shikimat 95.0 0.013 4.3E-07 51.4 3.1 25 176-200 49-73 (250)
234 3lnc_A Guanylate kinase, GMP k 95.0 0.0089 3.1E-07 51.6 2.1 23 176-198 28-51 (231)
235 2ffh_A Protein (FFH); SRP54, s 95.0 0.095 3.3E-06 49.5 9.3 28 174-201 97-124 (425)
236 2pcj_A ABC transporter, lipopr 95.0 0.012 4.2E-07 50.6 2.9 23 176-198 31-53 (224)
237 1sq5_A Pantothenate kinase; P- 95.0 0.018 6E-07 52.2 4.1 28 173-200 78-105 (308)
238 3r20_A Cytidylate kinase; stru 95.0 0.017 5.7E-07 50.0 3.7 26 175-200 9-34 (233)
239 3d3q_A TRNA delta(2)-isopenten 94.9 0.016 5.5E-07 53.0 3.8 24 176-199 8-31 (340)
240 1tue_A Replication protein E1; 94.9 0.021 7.3E-07 48.0 4.1 26 175-200 58-83 (212)
241 3b9q_A Chloroplast SRP recepto 94.9 0.018 6.1E-07 52.0 3.9 27 174-200 99-125 (302)
242 2zts_A Putative uncharacterize 94.8 0.063 2.1E-06 46.5 7.2 48 176-226 31-78 (251)
243 3ake_A Cytidylate kinase; CMP 94.8 0.018 6.2E-07 48.5 3.6 24 177-200 4-27 (208)
244 3crm_A TRNA delta(2)-isopenten 94.8 0.018 6.2E-07 52.2 3.8 24 176-199 6-29 (323)
245 1cr0_A DNA primase/helicase; R 94.8 0.061 2.1E-06 48.2 7.2 38 176-214 36-73 (296)
246 3be4_A Adenylate kinase; malar 94.8 0.02 6.7E-07 48.9 3.8 25 176-200 6-30 (217)
247 1ak2_A Adenylate kinase isoenz 94.8 0.021 7.3E-07 49.3 4.0 26 175-200 16-41 (233)
248 3exa_A TRNA delta(2)-isopenten 94.8 0.019 6.6E-07 51.7 3.7 25 175-199 3-27 (322)
249 3p32_A Probable GTPase RV1496/ 94.8 0.039 1.3E-06 51.0 6.0 37 164-200 66-104 (355)
250 1e4v_A Adenylate kinase; trans 94.8 0.02 6.8E-07 48.7 3.7 23 177-199 2-24 (214)
251 3a8t_A Adenylate isopentenyltr 94.7 0.019 6.4E-07 52.4 3.6 25 175-199 40-64 (339)
252 2xb4_A Adenylate kinase; ATP-b 94.7 0.02 6.7E-07 49.2 3.6 23 177-199 2-24 (223)
253 3b85_A Phosphate starvation-in 94.7 0.012 4.3E-07 49.9 2.3 23 176-198 23-45 (208)
254 2cbz_A Multidrug resistance-as 94.7 0.015 5.1E-07 50.5 2.9 24 176-199 32-55 (237)
255 3foz_A TRNA delta(2)-isopenten 94.7 0.025 8.5E-07 50.9 4.3 26 174-199 9-34 (316)
256 1g41_A Heat shock protein HSLU 94.7 0.019 6.5E-07 54.5 3.7 46 155-200 16-75 (444)
257 3bgw_A DNAB-like replicative h 94.7 0.12 4.2E-06 49.2 9.3 60 162-227 186-245 (444)
258 1b0u_A Histidine permease; ABC 94.7 0.015 5.2E-07 51.3 2.8 24 175-198 32-55 (262)
259 4eaq_A DTMP kinase, thymidylat 94.7 0.047 1.6E-06 47.1 5.9 28 174-201 25-52 (229)
260 3sr0_A Adenylate kinase; phosp 94.7 0.021 7.3E-07 48.4 3.6 24 177-200 2-25 (206)
261 2d2e_A SUFC protein; ABC-ATPas 94.7 0.019 6.4E-07 50.4 3.3 23 176-198 30-52 (250)
262 3lv8_A DTMP kinase, thymidylat 94.7 0.061 2.1E-06 46.5 6.6 52 175-227 27-78 (236)
263 3cmw_A Protein RECA, recombina 94.7 0.075 2.5E-06 58.6 8.6 85 175-266 732-822 (1706)
264 3gqb_B V-type ATP synthase bet 94.6 0.08 2.7E-06 50.1 7.7 88 177-264 149-261 (464)
265 3gfo_A Cobalt import ATP-bindi 94.6 0.018 6.2E-07 51.2 3.2 23 176-198 35-57 (275)
266 2eyu_A Twitching motility prot 94.6 0.021 7.3E-07 50.3 3.6 109 174-294 24-135 (261)
267 1ltq_A Polynucleotide kinase; 94.6 0.021 7.3E-07 51.3 3.7 23 176-198 3-25 (301)
268 1g6h_A High-affinity branched- 94.6 0.017 5.7E-07 50.9 2.8 23 176-198 34-56 (257)
269 1ji0_A ABC transporter; ATP bi 94.6 0.017 5.8E-07 50.3 2.8 23 176-198 33-55 (240)
270 3gmt_A Adenylate kinase; ssgci 94.6 0.12 4.2E-06 44.3 8.2 25 176-200 9-33 (230)
271 1oix_A RAS-related protein RAB 94.6 0.023 7.9E-07 47.3 3.6 25 175-199 29-53 (191)
272 2zu0_C Probable ATP-dependent 94.6 0.02 6.9E-07 50.7 3.3 23 176-198 47-69 (267)
273 2pze_A Cystic fibrosis transme 94.5 0.018 6E-07 49.8 2.8 24 176-199 35-58 (229)
274 4tmk_A Protein (thymidylate ki 94.5 0.074 2.5E-06 45.2 6.7 52 176-228 4-55 (213)
275 1sgw_A Putative ABC transporte 94.5 0.015 5.2E-07 49.6 2.4 23 176-198 36-58 (214)
276 2ff7_A Alpha-hemolysin translo 94.5 0.018 6.1E-07 50.4 2.8 23 176-198 36-58 (247)
277 1mv5_A LMRA, multidrug resista 94.5 0.019 6.4E-07 50.1 2.9 24 175-198 28-51 (243)
278 3zvl_A Bifunctional polynucleo 94.5 0.021 7.1E-07 54.1 3.5 28 172-199 255-282 (416)
279 2olj_A Amino acid ABC transpor 94.5 0.018 6.1E-07 50.9 2.8 24 175-198 50-73 (263)
280 4g1u_C Hemin import ATP-bindin 94.5 0.02 6.8E-07 50.7 3.2 23 176-198 38-60 (266)
281 2og2_A Putative signal recogni 94.5 0.025 8.5E-07 52.3 3.9 27 174-200 156-182 (359)
282 1a7j_A Phosphoribulokinase; tr 94.5 0.012 4E-07 52.9 1.6 27 174-200 4-30 (290)
283 3end_A Light-independent proto 94.4 0.028 9.7E-07 50.7 4.1 41 172-214 38-78 (307)
284 2qe7_A ATP synthase subunit al 94.4 0.066 2.3E-06 51.2 6.7 84 177-264 164-264 (502)
285 1vpl_A ABC transporter, ATP-bi 94.4 0.019 6.6E-07 50.4 2.8 23 176-198 42-64 (256)
286 3mfy_A V-type ATP synthase alp 94.4 0.12 4.1E-06 50.0 8.4 47 176-226 228-275 (588)
287 2ixe_A Antigen peptide transpo 94.4 0.02 6.7E-07 50.9 2.8 24 175-198 45-68 (271)
288 2ghi_A Transport protein; mult 94.4 0.02 6.8E-07 50.5 2.9 23 176-198 47-69 (260)
289 1yrb_A ATP(GTP)binding protein 94.4 0.042 1.5E-06 48.1 5.0 27 174-200 13-39 (262)
290 2r9v_A ATP synthase subunit al 94.4 0.068 2.3E-06 51.2 6.6 84 177-264 177-277 (515)
291 2qi9_C Vitamin B12 import ATP- 94.3 0.021 7.1E-07 50.0 2.8 23 176-198 27-49 (249)
292 2f9l_A RAB11B, member RAS onco 94.3 0.025 8.6E-07 47.3 3.2 24 176-199 6-29 (199)
293 2v9p_A Replication protein E1; 94.3 0.025 8.4E-07 51.0 3.3 26 174-199 125-150 (305)
294 2yz2_A Putative ABC transporte 94.3 0.021 7.3E-07 50.5 2.8 23 176-198 34-56 (266)
295 3sop_A Neuronal-specific septi 94.3 0.027 9.4E-07 49.9 3.5 23 177-199 4-26 (270)
296 3cmu_A Protein RECA, recombina 94.2 0.11 3.6E-06 58.2 8.7 84 175-265 383-472 (2050)
297 2ihy_A ABC transporter, ATP-bi 94.2 0.022 7.4E-07 50.8 2.8 23 176-198 48-70 (279)
298 1zu4_A FTSY; GTPase, signal re 94.2 0.034 1.2E-06 50.6 4.2 28 174-201 104-131 (320)
299 4edh_A DTMP kinase, thymidylat 94.2 0.095 3.2E-06 44.6 6.7 32 175-207 6-37 (213)
300 2wji_A Ferrous iron transport 94.2 0.032 1.1E-06 45.1 3.6 23 176-198 4-26 (165)
301 2nq2_C Hypothetical ABC transp 94.2 0.022 7.5E-07 50.0 2.8 24 176-199 32-55 (253)
302 3ld9_A DTMP kinase, thymidylat 94.2 0.063 2.1E-06 46.0 5.5 56 172-228 18-74 (223)
303 3cmw_A Protein RECA, recombina 94.2 0.16 5.4E-06 56.1 9.8 84 174-264 1430-1519(1706)
304 1nlf_A Regulatory protein REPA 94.2 0.028 9.5E-07 50.0 3.4 42 175-216 30-79 (279)
305 2ocp_A DGK, deoxyguanosine kin 94.1 0.037 1.3E-06 48.0 4.1 25 175-199 2-26 (241)
306 2yhs_A FTSY, cell division pro 94.1 0.032 1.1E-06 53.5 4.0 28 174-201 292-319 (503)
307 3fvq_A Fe(3+) IONS import ATP- 94.1 0.028 9.7E-07 51.8 3.4 23 176-198 31-53 (359)
308 2zej_A Dardarin, leucine-rich 94.1 0.026 8.8E-07 46.6 2.9 22 177-198 4-25 (184)
309 2dyk_A GTP-binding protein; GT 94.1 0.036 1.2E-06 44.2 3.7 24 176-199 2-25 (161)
310 1q57_A DNA primase/helicase; d 94.1 0.17 5.9E-06 49.0 9.2 50 176-228 243-292 (503)
311 2ce2_X GTPase HRAS; signaling 94.1 0.029 1E-06 44.8 3.1 23 177-199 5-27 (166)
312 1q3t_A Cytidylate kinase; nucl 94.1 0.036 1.2E-06 47.9 3.9 26 174-199 15-40 (236)
313 1g8f_A Sulfate adenylyltransfe 94.0 0.052 1.8E-06 52.6 5.2 43 158-200 376-420 (511)
314 3io3_A DEHA2D07832P; chaperone 94.0 0.083 2.8E-06 48.6 6.3 30 171-200 14-43 (348)
315 3kta_A Chromosome segregation 94.0 0.037 1.3E-06 45.5 3.6 24 176-199 27-50 (182)
316 1svm_A Large T antigen; AAA+ f 94.0 0.036 1.2E-06 51.6 3.8 27 173-199 167-193 (377)
317 3eph_A TRNA isopentenyltransfe 93.9 0.037 1.3E-06 51.7 3.8 24 176-199 3-26 (409)
318 2pjz_A Hypothetical protein ST 93.9 0.028 9.6E-07 49.6 2.8 23 176-198 31-53 (263)
319 1z2a_A RAS-related protein RAB 93.9 0.036 1.2E-06 44.5 3.3 24 176-199 6-29 (168)
320 3vr4_A V-type sodium ATPase ca 93.9 0.18 6E-06 49.1 8.4 47 176-226 233-280 (600)
321 1cp2_A CP2, nitrogenase iron p 93.9 0.045 1.5E-06 48.2 4.2 37 176-214 2-38 (269)
322 2fz4_A DNA repair protein RAD2 93.9 0.35 1.2E-05 41.7 9.8 22 178-199 111-132 (237)
323 2qmh_A HPR kinase/phosphorylas 93.9 0.03 1E-06 46.9 2.7 25 175-199 34-58 (205)
324 2vp4_A Deoxynucleoside kinase; 93.9 0.025 8.5E-07 48.8 2.4 25 174-198 19-43 (230)
325 2wjg_A FEOB, ferrous iron tran 93.8 0.038 1.3E-06 45.5 3.4 23 176-198 8-30 (188)
326 2ck3_A ATP synthase subunit al 93.8 0.1 3.5E-06 50.0 6.7 88 177-264 164-272 (510)
327 1z47_A CYSA, putative ABC-tran 93.8 0.034 1.2E-06 51.2 3.3 23 176-198 42-64 (355)
328 1fx0_A ATP synthase alpha chai 93.8 0.083 2.8E-06 50.6 6.0 84 177-264 165-265 (507)
329 2ged_A SR-beta, signal recogni 93.8 0.047 1.6E-06 45.2 3.9 26 174-199 47-72 (193)
330 1zj6_A ADP-ribosylation factor 93.8 0.068 2.3E-06 44.0 4.9 33 165-198 7-39 (187)
331 1moz_A ARL1, ADP-ribosylation 93.7 0.048 1.6E-06 44.6 3.9 33 165-197 7-40 (183)
332 1nij_A Hypothetical protein YJ 93.7 0.032 1.1E-06 50.8 3.0 26 174-199 3-28 (318)
333 3tui_C Methionine import ATP-b 93.7 0.036 1.2E-06 51.2 3.3 24 175-198 54-77 (366)
334 1fzq_A ADP-ribosylation factor 93.7 0.061 2.1E-06 44.1 4.5 26 173-198 14-39 (181)
335 2lkc_A Translation initiation 93.7 0.044 1.5E-06 44.6 3.6 25 174-198 7-31 (178)
336 3rlf_A Maltose/maltodextrin im 93.7 0.036 1.2E-06 51.5 3.3 23 176-198 30-52 (381)
337 2bbs_A Cystic fibrosis transme 93.7 0.033 1.1E-06 49.9 2.9 24 176-199 65-88 (290)
338 2yyz_A Sugar ABC transporter, 93.7 0.037 1.3E-06 51.1 3.3 23 176-198 30-52 (359)
339 3iqw_A Tail-anchored protein t 93.7 0.099 3.4E-06 47.8 6.1 31 171-201 12-42 (334)
340 2it1_A 362AA long hypothetical 93.7 0.038 1.3E-06 51.1 3.3 23 176-198 30-52 (362)
341 1nrj_B SR-beta, signal recogni 93.6 0.05 1.7E-06 46.1 3.9 27 173-199 10-36 (218)
342 3con_A GTPase NRAS; structural 93.6 0.041 1.4E-06 45.4 3.3 23 177-199 23-45 (190)
343 1r8s_A ADP-ribosylation factor 93.6 0.045 1.5E-06 43.8 3.4 22 178-199 3-24 (164)
344 3jvv_A Twitching mobility prot 93.6 0.048 1.6E-06 50.4 4.0 113 174-295 122-234 (356)
345 1u8z_A RAS-related protein RAL 93.6 0.039 1.3E-06 44.2 3.0 24 176-199 5-28 (168)
346 2r8r_A Sensor protein; KDPD, P 93.6 0.063 2.2E-06 45.9 4.3 37 176-214 7-43 (228)
347 4gzl_A RAS-related C3 botulinu 93.6 0.046 1.6E-06 45.9 3.5 28 172-199 27-54 (204)
348 3nh6_A ATP-binding cassette SU 93.6 0.029 9.7E-07 50.7 2.3 24 175-198 80-103 (306)
349 1g29_1 MALK, maltose transport 93.6 0.04 1.4E-06 51.2 3.3 23 176-198 30-52 (372)
350 1v43_A Sugar-binding transport 93.6 0.04 1.4E-06 51.1 3.3 23 176-198 38-60 (372)
351 3oaa_A ATP synthase subunit al 93.5 0.22 7.5E-06 47.6 8.4 84 177-264 164-264 (513)
352 2e87_A Hypothetical protein PH 93.5 1.3 4.5E-05 40.6 13.7 26 173-198 165-190 (357)
353 1c1y_A RAS-related protein RAP 93.5 0.045 1.5E-06 43.9 3.3 23 177-199 5-27 (167)
354 1u0j_A DNA replication protein 93.5 0.089 3.1E-06 46.2 5.3 37 163-199 90-128 (267)
355 2nzj_A GTP-binding protein REM 93.5 0.042 1.4E-06 44.5 3.1 23 176-198 5-27 (175)
356 1ek0_A Protein (GTP-binding pr 93.5 0.042 1.4E-06 44.2 3.0 23 177-199 5-27 (170)
357 1z08_A RAS-related protein RAB 93.5 0.041 1.4E-06 44.3 3.0 24 176-199 7-30 (170)
358 1m7b_A RND3/RHOE small GTP-bin 93.5 0.043 1.5E-06 45.1 3.1 24 176-199 8-31 (184)
359 3f9v_A Minichromosome maintena 93.5 0.025 8.5E-07 56.2 1.9 23 177-199 329-351 (595)
360 1kao_A RAP2A; GTP-binding prot 93.5 0.047 1.6E-06 43.7 3.3 23 177-199 5-27 (167)
361 2gj8_A MNME, tRNA modification 93.5 0.043 1.5E-06 44.8 3.0 23 176-198 5-27 (172)
362 3hjn_A DTMP kinase, thymidylat 93.4 0.16 5.4E-06 42.6 6.6 51 177-229 2-52 (197)
363 1z0j_A RAB-22, RAS-related pro 93.4 0.043 1.5E-06 44.1 3.0 23 177-199 8-30 (170)
364 3ihw_A Centg3; RAS, centaurin, 93.4 0.047 1.6E-06 45.1 3.3 24 176-199 21-44 (184)
365 1svi_A GTP-binding protein YSX 93.4 0.056 1.9E-06 44.8 3.7 25 174-198 22-46 (195)
366 1f6b_A SAR1; gtpases, N-termin 93.4 0.076 2.6E-06 44.3 4.6 24 174-197 24-47 (198)
367 3q72_A GTP-binding protein RAD 93.4 0.045 1.5E-06 43.9 3.0 21 177-197 4-24 (166)
368 1ky3_A GTP-binding protein YPT 93.4 0.044 1.5E-06 44.6 3.0 26 174-199 7-32 (182)
369 3d31_A Sulfate/molybdate ABC t 93.4 0.034 1.2E-06 51.1 2.5 23 176-198 27-49 (348)
370 1tq4_A IIGP1, interferon-induc 93.4 0.056 1.9E-06 50.9 4.0 24 174-197 68-91 (413)
371 2www_A Methylmalonic aciduria 93.4 0.094 3.2E-06 48.3 5.5 26 174-199 73-98 (349)
372 2erx_A GTP-binding protein DI- 93.3 0.044 1.5E-06 44.1 2.9 22 177-198 5-26 (172)
373 2afh_E Nitrogenase iron protei 93.3 0.06 2E-06 48.1 4.0 37 176-214 3-39 (289)
374 3cr8_A Sulfate adenylyltranfer 93.3 0.065 2.2E-06 52.5 4.5 27 174-200 368-394 (552)
375 3q85_A GTP-binding protein REM 93.3 0.048 1.7E-06 43.9 3.1 21 177-197 4-24 (169)
376 1g16_A RAS-related protein SEC 93.3 0.054 1.8E-06 43.5 3.4 24 176-199 4-27 (170)
377 3pqc_A Probable GTP-binding pr 93.3 0.056 1.9E-06 44.6 3.5 25 175-199 23-47 (195)
378 1wms_A RAB-9, RAB9, RAS-relate 93.2 0.052 1.8E-06 44.0 3.3 24 176-199 8-31 (177)
379 2v3c_C SRP54, signal recogniti 93.2 0.034 1.2E-06 52.8 2.4 27 174-200 98-124 (432)
380 2hxs_A RAB-26, RAS-related pro 93.2 0.051 1.8E-06 44.1 3.2 23 176-198 7-29 (178)
381 3c5c_A RAS-like protein 12; GD 93.2 0.048 1.6E-06 45.1 3.0 24 176-199 22-45 (187)
382 3gd7_A Fusion complex of cysti 93.2 0.051 1.7E-06 50.8 3.4 22 176-197 48-69 (390)
383 2fn4_A P23, RAS-related protei 93.2 0.071 2.4E-06 43.3 4.0 25 175-199 9-33 (181)
384 2yv5_A YJEQ protein; hydrolase 93.2 0.088 3E-06 47.4 4.9 33 163-199 156-188 (302)
385 2h92_A Cytidylate kinase; ross 93.2 0.052 1.8E-06 46.1 3.3 24 176-199 4-27 (219)
386 1m2o_B GTP-binding protein SAR 93.2 0.055 1.9E-06 44.8 3.4 24 175-198 23-46 (190)
387 1r2q_A RAS-related protein RAB 93.2 0.055 1.9E-06 43.4 3.3 24 176-199 7-30 (170)
388 1lw7_A Transcriptional regulat 93.1 0.051 1.7E-06 50.4 3.4 26 175-200 170-195 (365)
389 2ewv_A Twitching motility prot 93.1 0.078 2.7E-06 49.3 4.6 109 173-294 134-246 (372)
390 2bme_A RAB4A, RAS-related prot 93.1 0.053 1.8E-06 44.4 3.1 24 176-199 11-34 (186)
391 1p5z_B DCK, deoxycytidine kina 93.1 0.032 1.1E-06 49.2 1.8 26 174-199 23-48 (263)
392 2y8e_A RAB-protein 6, GH09086P 93.0 0.056 1.9E-06 43.9 3.1 24 176-199 15-38 (179)
393 1z0f_A RAB14, member RAS oncog 93.0 0.059 2E-06 43.7 3.3 25 175-199 15-39 (179)
394 1oxx_K GLCV, glucose, ABC tran 93.0 0.032 1.1E-06 51.4 1.8 23 176-198 32-54 (353)
395 3fdi_A Uncharacterized protein 93.0 0.069 2.4E-06 45.0 3.8 25 176-200 7-31 (201)
396 2cjw_A GTP-binding protein GEM 93.0 0.061 2.1E-06 44.7 3.4 23 176-198 7-29 (192)
397 1tf7_A KAIC; homohexamer, hexa 93.0 0.19 6.5E-06 49.0 7.4 26 175-200 281-306 (525)
398 2cxx_A Probable GTP-binding pr 93.0 0.052 1.8E-06 44.7 2.9 22 177-198 3-24 (190)
399 4dsu_A GTPase KRAS, isoform 2B 93.0 0.055 1.9E-06 44.4 3.0 24 176-199 5-28 (189)
400 3kkq_A RAS-related protein M-R 93.0 0.056 1.9E-06 44.2 3.0 25 175-199 18-42 (183)
401 3dz8_A RAS-related protein RAB 93.0 0.066 2.2E-06 44.3 3.5 23 177-199 25-47 (191)
402 2qnr_A Septin-2, protein NEDD5 92.9 0.051 1.7E-06 49.0 3.0 21 177-197 20-40 (301)
403 2axn_A 6-phosphofructo-2-kinas 92.9 0.07 2.4E-06 52.0 4.1 27 174-200 34-60 (520)
404 2iwr_A Centaurin gamma 1; ANK 92.9 0.046 1.6E-06 44.5 2.4 24 176-199 8-31 (178)
405 3bc1_A RAS-related protein RAB 92.9 0.063 2.1E-06 44.2 3.3 24 176-199 12-35 (195)
406 1p9r_A General secretion pathw 92.9 0.1 3.5E-06 49.3 5.0 28 173-200 165-192 (418)
407 3t5g_A GTP-binding protein RHE 92.9 0.061 2.1E-06 43.9 3.1 25 175-199 6-30 (181)
408 1mh1_A RAC1; GTP-binding, GTPa 92.9 0.058 2E-06 44.1 3.0 23 177-199 7-29 (186)
409 3t1o_A Gliding protein MGLA; G 92.8 0.063 2.2E-06 44.3 3.3 23 176-198 15-37 (198)
410 2gza_A Type IV secretion syste 92.8 0.053 1.8E-06 50.3 3.0 25 176-200 176-200 (361)
411 1upt_A ARL1, ADP-ribosylation 92.8 0.083 2.8E-06 42.5 3.9 24 176-199 8-31 (171)
412 3bwd_D RAC-like GTP-binding pr 92.8 0.06 2E-06 43.9 3.0 25 175-199 8-32 (182)
413 2oil_A CATX-8, RAS-related pro 92.8 0.064 2.2E-06 44.4 3.2 24 176-199 26-49 (193)
414 3cbq_A GTP-binding protein REM 92.8 0.048 1.6E-06 45.5 2.4 22 175-196 23-44 (195)
415 3kjh_A CO dehydrogenase/acetyl 92.8 0.13 4.5E-06 44.4 5.4 38 178-217 3-40 (254)
416 2a9k_A RAS-related protein RAL 92.8 0.06 2.1E-06 44.0 3.0 25 175-199 18-42 (187)
417 2efe_B Small GTP-binding prote 92.8 0.061 2.1E-06 43.8 3.0 24 176-199 13-36 (181)
418 2qm8_A GTPase/ATPase; G protei 92.8 0.074 2.5E-06 48.7 3.8 28 172-199 52-79 (337)
419 1m8p_A Sulfate adenylyltransfe 92.7 0.12 4.1E-06 50.9 5.5 28 173-200 394-421 (573)
420 2qtf_A Protein HFLX, GTP-bindi 92.7 0.17 5.7E-06 46.9 6.2 26 174-199 178-203 (364)
421 1gwn_A RHO-related GTP-binding 92.7 0.064 2.2E-06 45.2 3.1 25 175-199 28-52 (205)
422 1pui_A ENGB, probable GTP-bind 92.7 0.049 1.7E-06 45.8 2.4 26 173-198 24-49 (210)
423 2bov_A RAla, RAS-related prote 92.7 0.062 2.1E-06 44.8 3.0 25 175-199 14-38 (206)
424 2ew1_A RAS-related protein RAB 92.7 0.071 2.4E-06 44.8 3.4 25 175-199 26-50 (201)
425 3tw8_B RAS-related protein RAB 92.7 0.062 2.1E-06 43.7 2.9 24 175-198 9-32 (181)
426 2b6h_A ADP-ribosylation factor 92.7 0.068 2.3E-06 44.4 3.2 27 172-198 26-52 (192)
427 2g6b_A RAS-related protein RAB 92.7 0.071 2.4E-06 43.4 3.3 24 176-199 11-34 (180)
428 3oes_A GTPase rhebl1; small GT 92.6 0.072 2.5E-06 44.5 3.4 26 174-199 23-48 (201)
429 2fg5_A RAB-22B, RAS-related pr 92.6 0.074 2.5E-06 44.0 3.4 24 176-199 24-47 (192)
430 2obl_A ESCN; ATPase, hydrolase 92.6 0.075 2.5E-06 48.9 3.6 25 176-200 72-96 (347)
431 1c9k_A COBU, adenosylcobinamid 92.6 0.11 3.6E-06 42.9 4.1 34 178-217 2-35 (180)
432 1u0l_A Probable GTPase ENGC; p 92.6 0.11 3.8E-06 46.7 4.7 34 163-199 160-193 (301)
433 3tmk_A Thymidylate kinase; pho 92.6 0.21 7E-06 42.5 6.1 27 175-201 5-31 (216)
434 1vg8_A RAS-related protein RAB 92.6 0.066 2.3E-06 44.8 3.0 25 175-199 8-32 (207)
435 2atv_A RERG, RAS-like estrogen 92.6 0.09 3.1E-06 43.6 3.8 26 174-199 27-52 (196)
436 4dkx_A RAS-related protein RAB 92.5 0.067 2.3E-06 45.6 3.0 22 178-199 16-37 (216)
437 1zd9_A ADP-ribosylation factor 92.5 0.075 2.6E-06 43.8 3.3 24 176-199 23-46 (188)
438 2fh5_B SR-beta, signal recogni 92.5 0.076 2.6E-06 44.8 3.3 25 175-199 7-31 (214)
439 2gf9_A RAS-related protein RAB 92.5 0.071 2.4E-06 44.0 3.0 24 176-199 23-46 (189)
440 3reg_A RHO-like small GTPase; 92.4 0.078 2.7E-06 43.9 3.3 25 175-199 23-47 (194)
441 3clv_A RAB5 protein, putative; 92.4 0.077 2.6E-06 44.0 3.3 25 175-199 7-31 (208)
442 2a5j_A RAS-related protein RAB 92.4 0.077 2.6E-06 43.8 3.2 23 177-199 23-45 (191)
443 3gqb_A V-type ATP synthase alp 92.4 0.17 5.8E-06 48.9 5.8 57 166-226 211-269 (578)
444 4b3f_X DNA-binding protein smu 92.4 0.21 7E-06 50.2 6.8 62 162-228 194-255 (646)
445 1bif_A 6-phosphofructo-2-kinas 92.4 0.088 3E-06 50.6 4.0 28 173-200 37-64 (469)
446 3tkl_A RAS-related protein RAB 92.4 0.073 2.5E-06 44.0 3.0 25 175-199 16-40 (196)
447 3tqf_A HPR(Ser) kinase; transf 92.3 0.087 3E-06 42.9 3.2 23 176-198 17-39 (181)
448 1z06_A RAS-related protein RAB 92.3 0.082 2.8E-06 43.6 3.3 25 175-199 20-44 (189)
449 2p67_A LAO/AO transport system 92.3 0.092 3.1E-06 48.2 3.9 28 172-199 53-80 (341)
450 3llu_A RAS-related GTP-binding 92.3 0.071 2.4E-06 44.3 2.9 23 176-198 21-43 (196)
451 2o52_A RAS-related protein RAB 92.3 0.07 2.4E-06 44.6 2.8 24 175-198 25-48 (200)
452 2npi_A Protein CLP1; CLP1-PCF1 92.3 0.073 2.5E-06 51.0 3.2 25 175-199 138-162 (460)
453 1zbd_A Rabphilin-3A; G protein 92.2 0.075 2.6E-06 44.4 2.9 24 176-199 9-32 (203)
454 2qu8_A Putative nucleolar GTP- 92.2 0.08 2.7E-06 45.3 3.2 25 174-198 28-52 (228)
455 2p5s_A RAS and EF-hand domain 92.2 0.076 2.6E-06 44.3 3.0 26 174-199 27-52 (199)
456 2bcg_Y Protein YP2, GTP-bindin 92.2 0.088 3E-06 44.1 3.4 24 176-199 9-32 (206)
457 2q3h_A RAS homolog gene family 92.2 0.07 2.4E-06 44.4 2.7 25 175-199 20-44 (201)
458 2g3y_A GTP-binding protein GEM 92.2 0.081 2.8E-06 44.9 3.1 22 176-197 38-59 (211)
459 2h17_A ADP-ribosylation factor 92.2 0.072 2.5E-06 43.6 2.7 23 176-198 22-44 (181)
460 1x3s_A RAS-related protein RAB 92.2 0.08 2.7E-06 43.7 3.0 24 176-199 16-39 (195)
461 1ksh_A ARF-like protein 2; sma 92.2 0.097 3.3E-06 42.9 3.5 27 173-199 16-42 (186)
462 1f2t_A RAD50 ABC-ATPase; DNA d 92.1 0.11 3.8E-06 41.3 3.7 24 175-198 23-46 (149)
463 4dzz_A Plasmid partitioning pr 92.1 0.18 6.1E-06 42.1 5.2 40 176-217 2-42 (206)
464 2atx_A Small GTP binding prote 92.1 0.086 2.9E-06 43.6 3.1 24 176-199 19-42 (194)
465 2fv8_A H6, RHO-related GTP-bin 92.1 0.094 3.2E-06 44.0 3.4 24 176-199 26-49 (207)
466 2gf0_A GTP-binding protein DI- 92.1 0.13 4.5E-06 42.5 4.2 25 175-199 8-32 (199)
467 2pt7_A CAG-ALFA; ATPase, prote 92.1 0.059 2E-06 49.2 2.2 105 176-293 172-276 (330)
468 2j1l_A RHO-related GTP-binding 92.0 0.078 2.7E-06 44.9 2.8 24 175-198 34-57 (214)
469 3cwq_A Para family chromosome 92.0 0.24 8.1E-06 41.8 5.9 42 177-221 2-44 (209)
470 1ega_A Protein (GTP-binding pr 92.0 0.093 3.2E-06 47.2 3.4 25 174-198 7-31 (301)
471 2rcn_A Probable GTPase ENGC; Y 92.0 0.09 3.1E-06 48.4 3.3 24 176-199 216-239 (358)
472 4bas_A ADP-ribosylation factor 92.0 0.1 3.4E-06 43.3 3.4 26 174-199 16-41 (199)
473 2j0v_A RAC-like GTP-binding pr 92.0 0.089 3.1E-06 44.2 3.1 25 175-199 9-33 (212)
474 2hup_A RAS-related protein RAB 92.0 0.09 3.1E-06 44.0 3.1 25 175-199 29-53 (201)
475 3lxx_A GTPase IMAP family memb 91.9 0.1 3.6E-06 45.0 3.6 26 174-199 28-53 (239)
476 2orv_A Thymidine kinase; TP4A 91.9 0.23 8E-06 42.5 5.6 106 175-291 19-125 (234)
477 3v9p_A DTMP kinase, thymidylat 91.9 0.076 2.6E-06 45.6 2.6 27 175-201 25-51 (227)
478 2gco_A H9, RHO-related GTP-bin 91.8 0.1 3.5E-06 43.5 3.4 24 176-199 26-49 (201)
479 3ch4_B Pmkase, phosphomevalona 91.8 0.15 5.2E-06 42.7 4.2 27 173-199 9-35 (202)
480 2gks_A Bifunctional SAT/APS ki 91.8 0.2 6.7E-06 49.1 5.7 43 158-200 353-397 (546)
481 2dpy_A FLII, flagellum-specifi 91.8 0.1 3.6E-06 49.6 3.6 26 175-200 157-182 (438)
482 1x6v_B Bifunctional 3'-phospho 91.8 0.11 3.9E-06 51.4 4.0 26 174-199 51-76 (630)
483 3q3j_B RHO-related GTP-binding 91.7 0.1 3.5E-06 44.1 3.3 24 176-199 28-51 (214)
484 3euj_A Chromosome partition pr 91.7 0.1 3.6E-06 50.0 3.6 25 176-200 30-54 (483)
485 2woj_A ATPase GET3; tail-ancho 91.7 0.35 1.2E-05 44.5 7.1 28 173-200 16-43 (354)
486 2fu5_C RAS-related protein RAB 91.7 0.056 1.9E-06 44.2 1.5 23 176-198 9-31 (183)
487 3cph_A RAS-related protein SEC 91.7 0.11 3.6E-06 43.7 3.3 25 175-199 20-44 (213)
488 2il1_A RAB12; G-protein, GDP, 91.7 0.096 3.3E-06 43.4 2.9 24 176-199 27-50 (192)
489 2qag_B Septin-6, protein NEDD5 91.6 0.08 2.7E-06 49.9 2.6 27 172-198 39-65 (427)
490 3fkq_A NTRC-like two-domain pr 91.6 0.22 7.6E-06 46.2 5.7 40 173-214 141-181 (373)
491 3k53_A Ferrous iron transport 91.6 0.12 4.2E-06 45.5 3.7 23 176-198 4-26 (271)
492 3iev_A GTP-binding protein ERA 91.5 0.11 3.7E-06 46.9 3.4 25 174-198 9-33 (308)
493 4hlc_A DTMP kinase, thymidylat 91.4 0.14 4.9E-06 43.1 3.8 50 176-228 3-52 (205)
494 3ea0_A ATPase, para family; al 91.4 0.18 6.2E-06 43.4 4.6 40 174-214 3-43 (245)
495 3zq6_A Putative arsenical pump 91.4 0.34 1.2E-05 43.9 6.5 27 175-201 14-40 (324)
496 3hdt_A Putative kinase; struct 91.3 0.15 5.2E-06 43.6 3.8 26 175-200 14-39 (223)
497 3geh_A MNME, tRNA modification 91.3 1.8 6.3E-05 41.2 11.8 88 67-199 161-248 (462)
498 2h57_A ADP-ribosylation factor 91.3 0.095 3.2E-06 43.2 2.5 24 176-199 22-45 (190)
499 2woo_A ATPase GET3; tail-ancho 91.2 0.31 1.1E-05 44.4 6.1 30 172-201 16-45 (329)
500 1h65_A Chloroplast outer envel 91.2 0.24 8.2E-06 43.6 5.2 26 174-199 38-63 (270)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=8.9e-36 Score=296.86 Aligned_cols=226 Identities=15% Similarity=0.172 Sum_probs=173.4
Q ss_pred hchHHHHHHHHHHhcC---CCceEEEEEecCCCcHHHHHHHHHH--HhcccCCCCEEEEEEeCCcC--CHHHHHHHHHHH
Q 047930 157 ESRMSTLNDILDALKN---PDVNMLGIYGMGGIGKTTLAKEVAR--KAENEKLFDQVIFVEVSQIQ--DIRKIQGEFADK 229 (395)
Q Consensus 157 ~gr~~~~~~l~~~l~~---~~~~vi~I~G~~GiGKTtLa~~v~~--~~~~~~~f~~~~wv~~s~~~--~~~~~~~~i~~~ 229 (395)
+||+.++++|.++|.. ++.++|+|+||||+||||||+++|+ +...+.+|++++|+++++.+ ++..++..|+.+
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~ 210 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLM 210 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHH
Confidence 3999999999999863 3679999999999999999999998 56677889999999999875 789999999999
Q ss_pred hCCCcc--cc------chhhhHHHHHHHHhcCCeEEEEEeCCCCccccchhccccCCCCCCcEEEEeecchhhhhhcCCC
Q 047930 230 LGLTLH--EE------TESGRARSLCNRLKKEKRILVILDNIWENLDFQAVGIPHGDGHKGSKVLLTARSLDVLSRKMDS 301 (395)
Q Consensus 230 l~~~~~--~~------~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iivTtR~~~va~~~~~~ 301 (395)
++.... .. ........+.+.|...|||||||||||+...+ .+. ..+||+||||||+..++......
T Consensus 211 l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~~-----~~~gs~ilvTTR~~~v~~~~~~~ 284 (549)
T 2a5y_B 211 LKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RWA-----QELRLRCLVTTRDVEISNAASQT 284 (549)
T ss_dssp HTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HHH-----HHTTCEEEEEESBGGGGGGCCSC
T ss_pred HhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-ccc-----ccCCCEEEEEcCCHHHHHHcCCC
Confidence 976421 11 11224567777777334999999999997754 111 12699999999999986432224
Q ss_pred cceeecCCCChHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHHHHHHHHHhhCCCHHHHHHHHHHhcCCCCCCCC
Q 047930 302 QQNFSFDVLKEDEAWSLFKKMAGDYIEGSEFKWVAREVAKECAGLPVSIVTVARALRNKRLFEWKDALEQLRRPSSTNFK 381 (395)
Q Consensus 302 ~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~i~~~l~~~~~~~w~~~l~~l~~~~~~~~~ 381 (395)
..+|+|++|++++||+||.+.++....++++.+++.+|+++|+|+||||+++|+.|+.++ .+|...+....+.. .
T Consensus 285 ~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~-w~~~~~l~~~l~~~---~- 359 (549)
T 2a5y_B 285 CEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLMMFFKSCEPKT-FEKMAQLNNKLESR---G- 359 (549)
T ss_dssp EEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSS-HHHHHHHHHHHHHH---C-
T ss_pred CeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCChHHHHHHHHHhccch-HHHHHHhHHHhhcc---c-
Confidence 468999999999999999999886554578888999999999999999999999998774 23333333211110 0
Q ss_pred CchHhhhhhhcccC
Q 047930 382 DIQPTAYKAIELSY 395 (395)
Q Consensus 382 ~~~~~i~~~L~lSY 395 (395)
..++..+|.+||
T Consensus 360 --~~~i~~~l~~Sy 371 (549)
T 2a5y_B 360 --LVGVECITPYSY 371 (549)
T ss_dssp --SSTTCCCSSSSS
T ss_pred --HHHHHHHHhccc
Confidence 245677888887
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.97 E-value=9.6e-31 Score=284.59 Aligned_cols=236 Identities=21% Similarity=0.292 Sum_probs=178.1
Q ss_pred cccccchhchHHHHHHHHHHhc--CCCceEEEEEecCCCcHHHHHHHHHHHhcc-cC-CCCEEEEEEeCCcCC--HHHHH
Q 047930 150 NKDYEAFESRMSTLNDILDALK--NPDVNMLGIYGMGGIGKTTLAKEVARKAEN-EK-LFDQVIFVEVSQIQD--IRKIQ 223 (395)
Q Consensus 150 ~~~~~~~~gr~~~~~~l~~~l~--~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~-~~-~f~~~~wv~~s~~~~--~~~~~ 223 (395)
|.....|+||+.++++|.++|. +++.++|+|+||||+||||||+++|++... .. .|+.++|+++++... ....+
T Consensus 120 p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 199 (1249)
T 3sfz_A 120 PQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKL 199 (1249)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHH
T ss_pred CCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHH
Confidence 3445679999999999999985 457899999999999999999999987533 23 446788999988543 34456
Q ss_pred HHHHHHhCCCccc-----cchhhhHHHHHHHHhc-CCeEEEEEeCCCCccccchhccccCCCCCCcEEEEeecchhhhhh
Q 047930 224 GEFADKLGLTLHE-----ETESGRARSLCNRLKK-EKRILVILDNIWENLDFQAVGIPHGDGHKGSKVLLTARSLDVLSR 297 (395)
Q Consensus 224 ~~i~~~l~~~~~~-----~~~~~~~~~l~~~l~~-~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iivTtR~~~va~~ 297 (395)
..++..+...... .........+...+.. ++|+||||||+|+...|..+ .+||+||||||+..++..
T Consensus 200 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~~~~~ 272 (1249)
T 3sfz_A 200 QNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKSVTDS 272 (1249)
T ss_dssp HHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTTTTTT
T ss_pred HHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh-------cCCCEEEEEcCCHHHHHh
Confidence 6777777543221 1222334455555542 34999999999998777654 468999999999988644
Q ss_pred cCCCcceeecCC-CChHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHHHHHHHHHhhCCCHHHHHHHHHHhcCCC
Q 047930 298 KMDSQQNFSFDV-LKEDEAWSLFKKMAGDYIEGSEFKWVAREVAKECAGLPVSIVTVARALRNKRLFEWKDALEQLRRPS 376 (395)
Q Consensus 298 ~~~~~~~~~l~~-L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~i~~~l~~~~~~~w~~~l~~l~~~~ 376 (395)
.......+++.+ |+++++++||...++.. .+++.+++++|+++|+|+||||+.+|++|+.++ .+|..+++.+....
T Consensus 273 ~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~--~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~l~~l~~~~ 349 (1249)
T 3sfz_A 273 VMGPKHVVPVESGLGREKGLEILSLFVNMK--KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYYLRQLQNKQ 349 (1249)
T ss_dssp CCSCBCCEECCSSCCHHHHHHHHHHHHTSC--STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHHHHHHHSCC
T ss_pred hcCCceEEEecCCCCHHHHHHHHHHhhCCC--hhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh-hHHHHHHHHHhhhh
Confidence 456667899996 99999999999988543 234445799999999999999999999999775 47999999987655
Q ss_pred CCCCC----CchHhhhhhhcccC
Q 047930 377 STNFK----DIQPTAYKAIELSY 395 (395)
Q Consensus 377 ~~~~~----~~~~~i~~~L~lSY 395 (395)
...+. ...+.+..+|.+||
T Consensus 350 ~~~~~~~~~~~~~~~~~~l~~s~ 372 (1249)
T 3sfz_A 350 FKRIRKSSSYDYEALDEAMSISV 372 (1249)
T ss_dssp CCCSSCTTCTTHHHHHHHHHHHH
T ss_pred hhhcccccccchHHHHHHHHHHH
Confidence 43321 12357888898887
No 3
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.96 E-value=1.1e-29 Score=258.87 Aligned_cols=210 Identities=21% Similarity=0.204 Sum_probs=157.1
Q ss_pred hhchHHHHHHHHHHhcC-CCceEEEEEecCCCcHHHHHHHHHHHhcccCCCCE-EEEEEeCCcCCHHHHHHHHHHHhCC-
Q 047930 156 FESRMSTLNDILDALKN-PDVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQ-VIFVEVSQIQDIRKIQGEFADKLGL- 232 (395)
Q Consensus 156 ~~gr~~~~~~l~~~l~~-~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~-~~wv~~s~~~~~~~~~~~i~~~l~~- 232 (395)
.+||+.++++|.++|.+ +..++|+|+||||+||||||+++|++.+.+.+|+. ++|+++++.++...++..|+..++.
T Consensus 130 ~VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~~i 209 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI 209 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHhhc
Confidence 38999999999999874 55789999999999999999999988766667986 9999999999988888888775421
Q ss_pred --Cccc--c-------chhhhHHHHHHHHh--cCCeEEEEEeCCCCccccchhccccCCCCCCcEEEEeecchhhhhhcC
Q 047930 233 --TLHE--E-------TESGRARSLCNRLK--KEKRILVILDNIWENLDFQAVGIPHGDGHKGSKVLLTARSLDVLSRKM 299 (395)
Q Consensus 233 --~~~~--~-------~~~~~~~~l~~~l~--~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iivTtR~~~va~~~~ 299 (395)
.... . ........+.+.|. .++|+||||||+|+...|+.+. +||+||||||+..++.. +
T Consensus 210 ~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~-------pGSRILVTTRd~~Va~~-l 281 (1221)
T 1vt4_I 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN-------LSCKILLTTRFKQVTDF-L 281 (1221)
T ss_dssp CSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH-------SSCCEEEECSCSHHHHH-H
T ss_pred CcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhC-------CCeEEEEeccChHHHHh-c
Confidence 1000 0 11122344555441 3789999999999988887642 68999999999887631 1
Q ss_pred CCcceeecC------CCChHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHHHHHHHHHhhCC--CHHHHHHHHHH
Q 047930 300 DSQQNFSFD------VLKEDEAWSLFKKMAGDYIEGSEFKWVAREVAKECAGLPVSIVTVARALRNK--RLFEWKDALEQ 371 (395)
Q Consensus 300 ~~~~~~~l~------~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~i~~~l~~~--~~~~w~~~l~~ 371 (395)
.....++++ +|+++|||+||.+.++.. .. ++..+| |+|+||||+++|+.|+.+ +..+|+..
T Consensus 282 ~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~--~e---eL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~~~--- 350 (1221)
T 1vt4_I 282 SAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR--PQ---DLPREV---LTTNPRRLSIIAESIRDGLATWDNWKHV--- 350 (1221)
T ss_dssp HHHSSCEEEECSSSSCCCHHHHHHHHHHHHCCC--TT---THHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHHHC---
T ss_pred CCCeEEEecCccccCCcCHHHHHHHHHHHcCCC--HH---HHHHHH---hCCCHHHHHHHHHHHhCCCCCHHHHhcC---
Confidence 222356666 999999999999986432 11 233343 999999999999999976 78889753
Q ss_pred hcCCCCCCCCCchHhhhhhhcccC
Q 047930 372 LRRPSSTNFKDIQPTAYKAIELSY 395 (395)
Q Consensus 372 l~~~~~~~~~~~~~~i~~~L~lSY 395 (395)
+ ...+..+|.+||
T Consensus 351 -------~----~~~I~aaLelSY 363 (1221)
T 1vt4_I 351 -------N----CDKLTTIIESSL 363 (1221)
T ss_dssp -------S----CHHHHHHHHHHH
T ss_pred -------C----hhHHHHHHHHHH
Confidence 1 256777777776
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.95 E-value=7.2e-28 Score=242.56 Aligned_cols=231 Identities=22% Similarity=0.311 Sum_probs=164.4
Q ss_pred cccchhchHHHHHHHHHHhc--CCCceEEEEEecCCCcHHHHHHHHHHHhcc-cCCC-CEEEEEEeCCcCCHHHHHHHH-
Q 047930 152 DYEAFESRMSTLNDILDALK--NPDVNMLGIYGMGGIGKTTLAKEVARKAEN-EKLF-DQVIFVEVSQIQDIRKIQGEF- 226 (395)
Q Consensus 152 ~~~~~~gr~~~~~~l~~~l~--~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~-~~~f-~~~~wv~~s~~~~~~~~~~~i- 226 (395)
....|+||+.++++|.++|. .++.++++|+||||+||||||.+++++... ..+| +.++|++++.. +...++..+
T Consensus 122 ~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~~l~ 200 (591)
T 1z6t_A 122 RPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLMKLQ 200 (591)
T ss_dssp CCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHHHHH
T ss_pred CCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHHHHHH
Confidence 34579999999999999987 356789999999999999999999987543 4568 57999999765 333444443
Q ss_pred --HHHhCCCc-----cccchhhhHHHHHHHHhc-CCeEEEEEeCCCCccccchhccccCCCCCCcEEEEeecchhhhhhc
Q 047930 227 --ADKLGLTL-----HEETESGRARSLCNRLKK-EKRILVILDNIWENLDFQAVGIPHGDGHKGSKVLLTARSLDVLSRK 298 (395)
Q Consensus 227 --~~~l~~~~-----~~~~~~~~~~~l~~~l~~-~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iivTtR~~~va~~~ 298 (395)
+..++... ...........+.+.+.. .+++||||||+|+...+..+ .+|++||||||+..++...
T Consensus 201 ~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l-------~~~~~ilvTsR~~~~~~~~ 273 (591)
T 1z6t_A 201 NLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF-------DSQCQILLTTRDKSVTDSV 273 (591)
T ss_dssp HHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT-------CSSCEEEEEESCGGGGTTC
T ss_pred HHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHh-------cCCCeEEEECCCcHHHHhc
Confidence 44454211 112223344556666653 37899999999987655432 4589999999998875322
Q ss_pred CCCcceeec---CCCChHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHHHHHHHHHhhCCCHHHHHHHHHHhcCC
Q 047930 299 MDSQQNFSF---DVLKEDEAWSLFKKMAGDYIEGSEFKWVAREVAKECAGLPVSIVTVARALRNKRLFEWKDALEQLRRP 375 (395)
Q Consensus 299 ~~~~~~~~l---~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~i~~~l~~~~~~~w~~~l~~l~~~ 375 (395)
. ...+++ ++|+.+|+++||...++... ....+.+.+|+++|+|+||||..+|+.|+.+. .+|..+++.+...
T Consensus 274 ~--~~~~~v~~l~~L~~~ea~~L~~~~~~~~~--~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~-~~w~~~l~~l~~~ 348 (591)
T 1z6t_A 274 M--GPKYVVPVESSLGKEKGLEILSLFVNMKK--ADLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NRWEYYLKQLQNK 348 (591)
T ss_dssp C--SCEEEEECCSSCCHHHHHHHHHHHHTSCG--GGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST-TCHHHHHHHHHSC
T ss_pred C--CCceEeecCCCCCHHHHHHHHHHHhCCCc--ccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc-hhHHHHHHHHHHh
Confidence 2 233443 68999999999999987421 22234689999999999999999999998763 3799999988765
Q ss_pred CCCCC----CCchHhhhhhhcccC
Q 047930 376 SSTNF----KDIQPTAYKAIELSY 395 (395)
Q Consensus 376 ~~~~~----~~~~~~i~~~L~lSY 395 (395)
....+ ......+..+|.+||
T Consensus 349 ~~~~~~~~~~~~~~~l~~~l~~s~ 372 (591)
T 1z6t_A 349 QFKRIRKSSSYDYEALDEAMSISV 372 (591)
T ss_dssp CCCCSSCCCSSCCHHHHHHHHHHH
T ss_pred HHHHhhhccccchHHHHHHHHHHH
Confidence 43221 112356777777765
No 5
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.68 E-value=6.5e-16 Score=144.75 Aligned_cols=198 Identities=14% Similarity=0.122 Sum_probs=128.6
Q ss_pred cccccchhchHHHHHHHHHHhcCCCceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcC------CHHHHH
Q 047930 150 NKDYEAFESRMSTLNDILDALKNPDVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQ------DIRKIQ 223 (395)
Q Consensus 150 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~------~~~~~~ 223 (395)
+.....|+||+.+++.|.+++..+ +++.|+|++|+|||||++++++... .+|+++.... +...++
T Consensus 8 ~~~~~~~~gR~~el~~L~~~l~~~--~~v~i~G~~G~GKT~Ll~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~ 78 (350)
T 2qen_A 8 KTRREDIFDREEESRKLEESLENY--PLTLLLGIRRVGKSSLLRAFLNERP-------GILIDCRELYAERGHITREELI 78 (350)
T ss_dssp CCSGGGSCSCHHHHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHSS-------EEEEEHHHHHHTTTCBCHHHHH
T ss_pred CCChHhcCChHHHHHHHHHHHhcC--CeEEEECCCcCCHHHHHHHHHHHcC-------cEEEEeecccccccCCCHHHHH
Confidence 444567999999999999988654 6899999999999999999997641 6788775442 566777
Q ss_pred HHHHHHhCCC-----------------cc--ccchhhhHHHHHHHHhcCCeEEEEEeCCCCccc--------cchhcccc
Q 047930 224 GEFADKLGLT-----------------LH--EETESGRARSLCNRLKKEKRILVILDNIWENLD--------FQAVGIPH 276 (395)
Q Consensus 224 ~~i~~~l~~~-----------------~~--~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~--------~~~l~~~l 276 (395)
..+...+... .+ ..........+.+.....++++|||||++.... +......+
T Consensus 79 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~ 158 (350)
T 2qen_A 79 KELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYA 158 (350)
T ss_dssp HHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHH
Confidence 7777665420 00 011111222333333222389999999976432 11111111
Q ss_pred CCCCCCcEEEEeecchhhhhh----------cC-CCcceeecCCCChHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCC
Q 047930 277 GDGHKGSKVLLTARSLDVLSR----------KM-DSQQNFSFDVLKEDEAWSLFKKMAGDYIEGSEFKWVAREVAKECAG 345 (395)
Q Consensus 277 ~~~~~gs~iivTtR~~~va~~----------~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~G 345 (395)
.+..++.++|+|++....... .. .....+++.||+.+|+.+++...+........ .+...+|++.|+|
T Consensus 159 ~~~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~~-~~~~~~i~~~tgG 237 (350)
T 2qen_A 159 YDSLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVP-ENEIEEAVELLDG 237 (350)
T ss_dssp HHHCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCCC-HHHHHHHHHHHTT
T ss_pred HHhcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHhCC
Confidence 112247789999887542111 11 11347999999999999999886532211111 3467899999999
Q ss_pred chHHHHHHHHHh
Q 047930 346 LPVSIVTVARAL 357 (395)
Q Consensus 346 lPlai~~i~~~l 357 (395)
+|+++..++..+
T Consensus 238 ~P~~l~~~~~~~ 249 (350)
T 2qen_A 238 IPGWLVVFGVEY 249 (350)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 999999998764
No 6
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.66 E-value=1.4e-15 Score=142.70 Aligned_cols=196 Identities=12% Similarity=0.188 Sum_probs=127.0
Q ss_pred cccccchhchHHHHHHHHHHhcCCCceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCc-----CCHHHHHH
Q 047930 150 NKDYEAFESRMSTLNDILDALKNPDVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQI-----QDIRKIQG 224 (395)
Q Consensus 150 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~-----~~~~~~~~ 224 (395)
......|+||+.+++.|.+ +.. +++.|+|++|+|||||++.+.+.... ..+|+++... .+...++.
T Consensus 9 ~~~~~~~~gR~~el~~L~~-l~~---~~v~i~G~~G~GKT~L~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~ 79 (357)
T 2fna_A 9 KDNRKDFFDREKEIEKLKG-LRA---PITLVLGLRRTGKSSIIKIGINELNL-----PYIYLDLRKFEERNYISYKDFLL 79 (357)
T ss_dssp CCSGGGSCCCHHHHHHHHH-TCS---SEEEEEESTTSSHHHHHHHHHHHHTC-----CEEEEEGGGGTTCSCCCHHHHHH
T ss_pred CCCHHHhcChHHHHHHHHH-hcC---CcEEEECCCCCCHHHHHHHHHHhcCC-----CEEEEEchhhccccCCCHHHHHH
Confidence 3445679999999999999 765 68999999999999999999987642 2578887643 34455555
Q ss_pred HHHHHhCC------------------Cccc----cc----hhhhHHHHHHHHhc-C-CeEEEEEeCCCCcc-----ccch
Q 047930 225 EFADKLGL------------------TLHE----ET----ESGRARSLCNRLKK-E-KRILVILDNIWENL-----DFQA 271 (395)
Q Consensus 225 ~i~~~l~~------------------~~~~----~~----~~~~~~~l~~~l~~-~-kr~LlVlDdv~~~~-----~~~~ 271 (395)
.+...+.. ..+. .. .......+.+.+.. . ++++|||||++... .+..
T Consensus 80 ~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~~~~~~ 159 (357)
T 2fna_A 80 ELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGVNLLP 159 (357)
T ss_dssp HHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTTCCCHH
T ss_pred HHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCchhHHH
Confidence 55443310 0000 00 11234455555542 1 48999999996532 2322
Q ss_pred hccccCCCCCCcEEEEeecchhhhhh----------cCCC-cceeecCCCChHHHHHHHHHhhCC-CCCCCchHHHHHHH
Q 047930 272 VGIPHGDGHKGSKVLLTARSLDVLSR----------KMDS-QQNFSFDVLKEDEAWSLFKKMAGD-YIEGSEFKWVAREV 339 (395)
Q Consensus 272 l~~~l~~~~~gs~iivTtR~~~va~~----------~~~~-~~~~~l~~L~~~e~~~lf~~~~~~-~~~~~~~~~~~~~i 339 (395)
+...+.+...+.++|+|++....... ..+. ...+++.+|+.+|+.+++...+.. ...... ...|
T Consensus 160 ~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~----~~~i 235 (357)
T 2fna_A 160 ALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKD----YEVV 235 (357)
T ss_dssp HHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCC----HHHH
T ss_pred HHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCc----HHHH
Confidence 22222222246789999997542111 1112 357999999999999999886531 112222 1789
Q ss_pred HHHcCCchHHHHHHHHHhh
Q 047930 340 AKECAGLPVSIVTVARALR 358 (395)
Q Consensus 340 ~~~c~GlPlai~~i~~~l~ 358 (395)
++.|+|+|+++..++..+.
T Consensus 236 ~~~t~G~P~~l~~~~~~~~ 254 (357)
T 2fna_A 236 YEKIGGIPGWLTYFGFIYL 254 (357)
T ss_dssp HHHHCSCHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHc
Confidence 9999999999999988764
No 7
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.57 E-value=3.6e-15 Score=115.53 Aligned_cols=78 Identities=13% Similarity=0.101 Sum_probs=67.9
Q ss_pred HHHHHHhhhHHHhhhhcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-ccchHHHHHHHHHHHHHHHHHHh
Q 047930 9 IVEAAKCLAPPIYRQMSYLRKSKYTSNLQNLKTEVGNLEAERVSKQREVDEAKRRG-EEIEKYVEKWLASVNGVIDEAEK 87 (395)
Q Consensus 9 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~i~~l~~~l~~i~~~l~~a~~~~-~~~~~~~~~Wl~~lr~~a~d~ed 87 (395)
++.++++|.+.+.+++..+ .++++++++|+++|++|+++|.+|+++. +..++.++.|+++||+++||+||
T Consensus 3 v~~ll~KL~~ll~~E~~l~---------~gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD~ED 73 (115)
T 3qfl_A 3 ISNLIPKLGELLTEEFKLH---------KGVKKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVRELSYVIED 73 (115)
T ss_dssp TCSHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH---------hchHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHH
Confidence 4456777888888887777 9999999999999999999999998873 34689999999999999999999
Q ss_pred hhhhhHhh
Q 047930 88 FTGVDARA 95 (395)
Q Consensus 88 ~ld~~~~~ 95 (395)
+||+|.+.
T Consensus 74 ~iD~f~~~ 81 (115)
T 3qfl_A 74 VVDKFLVQ 81 (115)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998643
No 8
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.57 E-value=4.7e-14 Score=135.18 Aligned_cols=219 Identities=16% Similarity=0.148 Sum_probs=139.5
Q ss_pred cchhchHHHHHHHHHHh-c----C--CCceEEEE--EecCCCcHHHHHHHHHHHhccc---CCCC-EEEEEEeCCcCCHH
Q 047930 154 EAFESRMSTLNDILDAL-K----N--PDVNMLGI--YGMGGIGKTTLAKEVARKAENE---KLFD-QVIFVEVSQIQDIR 220 (395)
Q Consensus 154 ~~~~gr~~~~~~l~~~l-~----~--~~~~vi~I--~G~~GiGKTtLa~~v~~~~~~~---~~f~-~~~wv~~s~~~~~~ 220 (395)
..|+||+.+++.|..++ . . .....+.| +|++|+|||||++.+++..... ..+. .++|+++....+..
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLY 101 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHH
T ss_pred CCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHH
Confidence 56899999999998887 3 2 34567777 9999999999999999875431 1133 36788877777889
Q ss_pred HHHHHHHHHhCCCccc--cchhhhHHHHHHHHh-cCCeEEEEEeCCCCcc--------ccchhccccCC-C--C--CCcE
Q 047930 221 KIQGEFADKLGLTLHE--ETESGRARSLCNRLK-KEKRILVILDNIWENL--------DFQAVGIPHGD-G--H--KGSK 284 (395)
Q Consensus 221 ~~~~~i~~~l~~~~~~--~~~~~~~~~l~~~l~-~~kr~LlVlDdv~~~~--------~~~~l~~~l~~-~--~--~gs~ 284 (395)
.++..++..++...+. .+.......+.+.+. .+++++|||||++... .+..+...+.. . . ....
T Consensus 102 ~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v~ 181 (412)
T 1w5s_A 102 TILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIG 181 (412)
T ss_dssp HHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBEE
T ss_pred HHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceEE
Confidence 9999999998764332 122233455555553 3679999999997632 12222222211 1 2 3455
Q ss_pred EEEeecchhhhh--------hcCCCcceeecCCCChHHHHHHHHHhhCCC-CCCCchHHHHHHHHHHcC------CchHH
Q 047930 285 VLLTARSLDVLS--------RKMDSQQNFSFDVLKEDEAWSLFKKMAGDY-IEGSEFKWVAREVAKECA------GLPVS 349 (395)
Q Consensus 285 iivTtR~~~va~--------~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~-~~~~~~~~~~~~i~~~c~------GlPla 349 (395)
+|+||+...+.. ........+++.+|+.++++++|...+... ....--.+....|++.|+ |.|..
T Consensus 182 lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~G~p~~ 261 (412)
T 1w5s_A 182 FLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGDGSARR 261 (412)
T ss_dssp EEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGTSCCCHHH
T ss_pred EEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhccCCCcHHH
Confidence 787887544210 001112239999999999999998665210 011112346788999999 99976
Q ss_pred HHHHHHHh---h---CC---CHHHHHHHHHHh
Q 047930 350 IVTVARAL---R---NK---RLFEWKDALEQL 372 (395)
Q Consensus 350 i~~i~~~l---~---~~---~~~~w~~~l~~l 372 (395)
+..+.... . .. +.+.+..++...
T Consensus 262 ~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~ 293 (412)
T 1w5s_A 262 AIVALKMACEMAEAMGRDSLSEDLVRKAVSEN 293 (412)
T ss_dssp HHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 66554332 1 11 456666666554
No 9
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.51 E-value=4.2e-13 Score=118.58 Aligned_cols=200 Identities=13% Similarity=0.137 Sum_probs=119.8
Q ss_pred cccccchhchHHHHHHHHHHhcCCC-ceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHHH
Q 047930 150 NKDYEAFESRMSTLNDILDALKNPD-VNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFAD 228 (395)
Q Consensus 150 ~~~~~~~~gr~~~~~~l~~~l~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 228 (395)
+.....++||+..++.+..++..+. .+.+.|+|++|+|||||++.+++.......+.. ........ ...+..
T Consensus 19 p~~~~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~------~~~~~~~~-~~~~~~ 91 (250)
T 1njg_A 19 PQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA------TPCGVCDN-CREIEQ 91 (250)
T ss_dssp CCSGGGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCS------SCCSCSHH-HHHHHT
T ss_pred CccHHHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC------CCCcccHH-HHHHhc
Confidence 3445679999999999998887443 457899999999999999999987653221100 00000000 001110
Q ss_pred HhCCCc-----cccchhhhHHHHHHHHh----cCCeEEEEEeCCCCc--cccchhccccCCCCCCcEEEEeecchhh-hh
Q 047930 229 KLGLTL-----HEETESGRARSLCNRLK----KEKRILVILDNIWEN--LDFQAVGIPHGDGHKGSKVLLTARSLDV-LS 296 (395)
Q Consensus 229 ~l~~~~-----~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR~~~v-a~ 296 (395)
...... ...........+.+.+. .+++.+|||||++.. ..+..+...+.....+..+|+||+.... ..
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~ 171 (250)
T 1njg_A 92 GRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPV 171 (250)
T ss_dssp TCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCH
T ss_pred cCCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCH
Confidence 000000 00001111222222221 246799999999653 3445554444334457788888876432 11
Q ss_pred hcCCCcceeecCCCChHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHHHHHHHHHh
Q 047930 297 RKMDSQQNFSFDVLKEDEAWSLFKKMAGDYIEGSEFKWVAREVAKECAGLPVSIVTVARAL 357 (395)
Q Consensus 297 ~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~i~~~l 357 (395)
........+++.+++.++..+++...+....... -.+..+.|++.|+|.|..+..+...+
T Consensus 172 ~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~~-~~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 172 TILSRCLQFHLKALDVEQIRHQLEHILNEEHIAH-EPRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp HHHTTSEEEECCCCCHHHHHHHHHHHHHHTTCCB-CHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhhhccCCCCCHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 1223356899999999999999998874322211 13467899999999999998876554
No 10
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.50 E-value=5.3e-13 Score=126.64 Aligned_cols=215 Identities=16% Similarity=0.117 Sum_probs=139.2
Q ss_pred cchhchHHHHHHHHHHhc----CCCceEEEEEecCCCcHHHHHHHHHHHhccc----CC--CCEEEEEEeCCcC-CHHHH
Q 047930 154 EAFESRMSTLNDILDALK----NPDVNMLGIYGMGGIGKTTLAKEVARKAENE----KL--FDQVIFVEVSQIQ-DIRKI 222 (395)
Q Consensus 154 ~~~~gr~~~~~~l~~~l~----~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~----~~--f~~~~wv~~s~~~-~~~~~ 222 (395)
..|+||+.+++.+..++. ....+.+.|+|++|+||||||+.+++..... .. ....+|++++... +...+
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 99 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAV 99 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHH
Confidence 568999999998887664 4456789999999999999999999875321 11 2347788887777 88889
Q ss_pred HHHHHHHh-CCCcc--ccchhhhHHHHHHHHhcCCeEEEEEeCCCCccc--cchh-ccccCCCCCCcEEEEeecchhhh-
Q 047930 223 QGEFADKL-GLTLH--EETESGRARSLCNRLKKEKRILVILDNIWENLD--FQAV-GIPHGDGHKGSKVLLTARSLDVL- 295 (395)
Q Consensus 223 ~~~i~~~l-~~~~~--~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~--~~~l-~~~l~~~~~gs~iivTtR~~~va- 295 (395)
+..++..+ +.... ..........+.+.+.. ++.+|||||++.... +... ...+.....+..+|+||+.....
T Consensus 100 ~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~-~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~iI~~t~~~~~~~ 178 (384)
T 2qby_B 100 LSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRN-IRAIIYLDEVDTLVKRRGGDIVLYQLLRSDANISVIMISNDINVRD 178 (384)
T ss_dssp HHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSS-SCEEEEEETTHHHHHSTTSHHHHHHHHTSSSCEEEEEECSSTTTTT
T ss_pred HHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhcc-CCCEEEEECHHHhccCCCCceeHHHHhcCCcceEEEEEECCCchHh
Confidence 99988887 32211 11223445666666664 344999999976432 1222 21221111678899998875321
Q ss_pred ---hhc-CCCcceeecCCCChHHHHHHHHHhhC---C-CCCCCchHHHHHHHHHHcC---CchHH-HHHHHHHh--h---
Q 047930 296 ---SRK-MDSQQNFSFDVLKEDEAWSLFKKMAG---D-YIEGSEFKWVAREVAKECA---GLPVS-IVTVARAL--R--- 358 (395)
Q Consensus 296 ---~~~-~~~~~~~~l~~L~~~e~~~lf~~~~~---~-~~~~~~~~~~~~~i~~~c~---GlPla-i~~i~~~l--~--- 358 (395)
... ......+++++++.++..++|...+. . ...++ +..+.+++.|+ |.|.. +..+-... .
T Consensus 179 ~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~~~ 255 (384)
T 2qby_B 179 YMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDD---EILSYIAAISAKEHGDARKAVNLLFRAAQLASGG 255 (384)
T ss_dssp TSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCS---HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTSS
T ss_pred hhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCH---HHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcCC
Confidence 111 01123899999999999999998753 1 12222 35677888888 98874 33333322 2
Q ss_pred CC-CHHHHHHHHHHh
Q 047930 359 NK-RLFEWKDALEQL 372 (395)
Q Consensus 359 ~~-~~~~w~~~l~~l 372 (395)
.. +.+.+..+++..
T Consensus 256 ~~i~~~~v~~~~~~~ 270 (384)
T 2qby_B 256 GIIRKEHVDKAIVDY 270 (384)
T ss_dssp SCCCHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHH
Confidence 12 778888777764
No 11
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.49 E-value=5.9e-13 Score=116.02 Aligned_cols=192 Identities=11% Similarity=0.058 Sum_probs=120.7
Q ss_pred cccccchhchHHHHHHHHHHhcCCCceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHHHH
Q 047930 150 NKDYEAFESRMSTLNDILDALKNPDVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFADK 229 (395)
Q Consensus 150 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 229 (395)
+.....++|++..++.+..++.....+.+.|+|++|+|||++|+.+++.......-...+.++.+.......+...+...
T Consensus 13 p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (226)
T 2chg_A 13 PRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIKEF 92 (226)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCHHHHHHHHHHH
T ss_pred CCCHHHHcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccChHHHHHHHHHH
Confidence 34456789999999999999887666669999999999999999999875332111224445554444433322222211
Q ss_pred hCCCccccchhhhHHHHHHHHhcCCeEEEEEeCCCCcc--ccchhccccCCCCCCcEEEEeecchhh-hhhcCCCcceee
Q 047930 230 LGLTLHEETESGRARSLCNRLKKEKRILVILDNIWENL--DFQAVGIPHGDGHKGSKVLLTARSLDV-LSRKMDSQQNFS 306 (395)
Q Consensus 230 l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iivTtR~~~v-a~~~~~~~~~~~ 306 (395)
..... ...+++.+|||||++... ....+...+.....++++|+||+.... ..........++
T Consensus 93 ~~~~~---------------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~i~ 157 (226)
T 2chg_A 93 ARTAP---------------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFR 157 (226)
T ss_dssp HTSCC---------------STTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEE
T ss_pred hcccC---------------CCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCceee
Confidence 11000 012568999999997652 233343333333456788888876432 111223345899
Q ss_pred cCCCChHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHHHHHHHHHh
Q 047930 307 FDVLKEDEAWSLFKKMAGDYIEGSEFKWVAREVAKECAGLPVSIVTVARAL 357 (395)
Q Consensus 307 l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~i~~~l 357 (395)
+.+++.++..+++.+.+....... -.+..+.+++.++|.|..+..+...+
T Consensus 158 ~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~l~~~~~g~~r~l~~~l~~~ 207 (226)
T 2chg_A 158 FKPVPKEAMKKRLLEICEKEGVKI-TEDGLEALIYISGGDFRKAINALQGA 207 (226)
T ss_dssp CCCCCHHHHHHHHHHHHHHHTCCB-CHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 999999999999998774211111 13467789999999999765554433
No 12
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.47 E-value=5.9e-13 Score=126.18 Aligned_cols=200 Identities=17% Similarity=0.197 Sum_probs=128.8
Q ss_pred cchhchHHHHHHHHHHhc----CCCceEEEEEecCCCcHHHHHHHHHHHhcccCC-CCEEEEEEeCCcCCHHHHHHHHHH
Q 047930 154 EAFESRMSTLNDILDALK----NPDVNMLGIYGMGGIGKTTLAKEVARKAENEKL-FDQVIFVEVSQIQDIRKIQGEFAD 228 (395)
Q Consensus 154 ~~~~gr~~~~~~l~~~l~----~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~-f~~~~wv~~s~~~~~~~~~~~i~~ 228 (395)
..|+||+.+++.+..++. ......+.|+|++|+|||||++.+++....... -..++|+++....+...++..++.
T Consensus 20 ~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~ 99 (386)
T 2qby_A 20 DELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLE 99 (386)
T ss_dssp SCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHTT
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHHH
Confidence 568999999999999886 445678999999999999999999987643211 124678887777778888888888
Q ss_pred HhCCCcccc--chhhhHHHHHHHHhc-CCeEEEEEeCCCCcc------ccchhccccCC-CCCCcEEEEeecchhhhhhc
Q 047930 229 KLGLTLHEE--TESGRARSLCNRLKK-EKRILVILDNIWENL------DFQAVGIPHGD-GHKGSKVLLTARSLDVLSRK 298 (395)
Q Consensus 229 ~l~~~~~~~--~~~~~~~~l~~~l~~-~kr~LlVlDdv~~~~------~~~~l~~~l~~-~~~gs~iivTtR~~~va~~~ 298 (395)
.++...... +.......+.+.+.. +++.+|||||++... .+..+...+.. ...+..+|+||+........
T Consensus 100 ~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~~~ 179 (386)
T 2qby_A 100 SLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVDLL 179 (386)
T ss_dssp TTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGGGC
T ss_pred HhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHhhh
Confidence 776543221 122334555566653 458999999996532 12222111111 23356678888765432110
Q ss_pred ------CCCcceeecCCCChHHHHHHHHHhhCCC-CCCCchHHHHHHHHHHcC---CchHHHHHH
Q 047930 299 ------MDSQQNFSFDVLKEDEAWSLFKKMAGDY-IEGSEFKWVAREVAKECA---GLPVSIVTV 353 (395)
Q Consensus 299 ------~~~~~~~~l~~L~~~e~~~lf~~~~~~~-~~~~~~~~~~~~i~~~c~---GlPlai~~i 353 (395)
.-....+++++++.++..++|...+... ....-..+..+.+++.++ |.|..+..+
T Consensus 180 ~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~l 244 (386)
T 2qby_A 180 DPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDL 244 (386)
T ss_dssp TTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred CHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 0112589999999999999999865310 011122345677888887 999854433
No 13
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.44 E-value=2.7e-12 Score=121.68 Aligned_cols=216 Identities=17% Similarity=0.173 Sum_probs=139.2
Q ss_pred cchhchHHHHHHHHHHhc----CCCceEEEEEecCCCcHHHHHHHHHHHhccc----CCCCEEEEEEeCCcCCHHHHHHH
Q 047930 154 EAFESRMSTLNDILDALK----NPDVNMLGIYGMGGIGKTTLAKEVARKAENE----KLFDQVIFVEVSQIQDIRKIQGE 225 (395)
Q Consensus 154 ~~~~gr~~~~~~l~~~l~----~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~----~~f~~~~wv~~s~~~~~~~~~~~ 225 (395)
..|+||+.+++.+..++. ....+.+.|+|++|+||||||+.+++..... ..-...+|+++....+...++..
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 98 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASA 98 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHH
Confidence 568999999999999874 3456789999999999999999999876321 11124678888888889999999
Q ss_pred HHHHhCCCcccc--chhhhHHHHHHHHh-cCCeEEEEEeCCCCcccc----chhc---cccCCC--CCCcEEEEeecchh
Q 047930 226 FADKLGLTLHEE--TESGRARSLCNRLK-KEKRILVILDNIWENLDF----QAVG---IPHGDG--HKGSKVLLTARSLD 293 (395)
Q Consensus 226 i~~~l~~~~~~~--~~~~~~~~l~~~l~-~~kr~LlVlDdv~~~~~~----~~l~---~~l~~~--~~gs~iivTtR~~~ 293 (395)
++..++...+.. +.......+.+.+. .+++.+|||||++..... ..+. ...... ..+..+|.||+...
T Consensus 99 l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~~ 178 (387)
T 2v1u_A 99 IAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSLG 178 (387)
T ss_dssp HHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCST
T ss_pred HHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCCc
Confidence 999987643321 12334556666664 356899999999764321 1121 111111 34567788877652
Q ss_pred hh----hhcCCC--cceeecCCCChHHHHHHHHHhhCC----CCCCCchHHHHHHHHHHcC---CchHHH-HHHHHHhh-
Q 047930 294 VL----SRKMDS--QQNFSFDVLKEDEAWSLFKKMAGD----YIEGSEFKWVAREVAKECA---GLPVSI-VTVARALR- 358 (395)
Q Consensus 294 va----~~~~~~--~~~~~l~~L~~~e~~~lf~~~~~~----~~~~~~~~~~~~~i~~~c~---GlPlai-~~i~~~l~- 358 (395)
.. ...... ...+.+++++.++..+++...+.. ...+++ ..+.+++.++ |.|..+ ..+.....
T Consensus 179 ~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~G~~r~~~~~l~~a~~~ 255 (387)
T 2v1u_A 179 FVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPD---VVPLCAALAAREHGDARRALDLLRVAGEI 255 (387)
T ss_dssp TSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSS---HHHHHHHHHHSSSCCHHHHHHHHHHHHHH
T ss_pred hHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHH---HHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence 21 111111 247999999999999999987531 222333 4677888888 999433 33322221
Q ss_pred ------CC-CHHHHHHHHHHh
Q 047930 359 ------NK-RLFEWKDALEQL 372 (395)
Q Consensus 359 ------~~-~~~~w~~~l~~l 372 (395)
.. +.+.+..+++..
T Consensus 256 a~~~~~~~i~~~~v~~a~~~~ 276 (387)
T 2v1u_A 256 AERRREERVRREHVYSARAEI 276 (387)
T ss_dssp HHHTTCSCBCHHHHHHHHHHH
T ss_pred HHHcCCCCcCHHHHHHHHHHH
Confidence 12 677777777654
No 14
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.33 E-value=3.6e-11 Score=114.10 Aligned_cols=219 Identities=13% Similarity=0.159 Sum_probs=140.1
Q ss_pred cchhchHHHHHHHHHHhcC----CCce--EEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHH
Q 047930 154 EAFESRMSTLNDILDALKN----PDVN--MLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFA 227 (395)
Q Consensus 154 ~~~~gr~~~~~~l~~~l~~----~~~~--vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 227 (395)
..++||+.+++.+..++.. .... .+.|+|++|+|||||++.+++...... -..++|++++...+...++..++
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~l~ 95 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKT-TARFVYINGFIYRNFTAIIGEIA 95 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSC-CCEEEEEETTTCCSHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhc-CeeEEEEeCccCCCHHHHHHHHH
Confidence 5689999999998888763 3334 899999999999999999998865321 12467888888888889999999
Q ss_pred HHhCCCccc--cchhhhHHHHHHHHh-cCCeEEEEEeCCCCcc--ccchhccccCC-CC---CCcEEEEeecchhhhhhc
Q 047930 228 DKLGLTLHE--ETESGRARSLCNRLK-KEKRILVILDNIWENL--DFQAVGIPHGD-GH---KGSKVLLTARSLDVLSRK 298 (395)
Q Consensus 228 ~~l~~~~~~--~~~~~~~~~l~~~l~-~~kr~LlVlDdv~~~~--~~~~l~~~l~~-~~---~gs~iivTtR~~~va~~~ 298 (395)
..++...+. .........+.+.+. .+++.+|||||++... ....+...+.. .. .+..+|++|+........
T Consensus 96 ~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l 175 (389)
T 1fnn_A 96 RSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNL 175 (389)
T ss_dssp HHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTS
T ss_pred HHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHh
Confidence 988754322 122333444555443 3568999999997642 22333222211 11 366788888765332111
Q ss_pred C----C--CcceeecCCCChHHHHHHHHHhhCCC-CCCCchHHHHHHHHHHc---------CCchHHHHHHHHHhh----
Q 047930 299 M----D--SQQNFSFDVLKEDEAWSLFKKMAGDY-IEGSEFKWVAREVAKEC---------AGLPVSIVTVARALR---- 358 (395)
Q Consensus 299 ~----~--~~~~~~l~~L~~~e~~~lf~~~~~~~-~~~~~~~~~~~~i~~~c---------~GlPlai~~i~~~l~---- 358 (395)
. . ....+++.+++.++..+++...+... ....--.+..+.+++.+ +|.|..+..+.....
T Consensus 176 ~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~ 255 (389)
T 1fnn_A 176 DPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQ 255 (389)
T ss_dssp CHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHH
T ss_pred CHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHH
Confidence 0 0 12369999999999999998876320 01112234678899999 798765554433221
Q ss_pred --C--C-CHHHHHHHHHHhc
Q 047930 359 --N--K-RLFEWKDALEQLR 373 (395)
Q Consensus 359 --~--~-~~~~w~~~l~~l~ 373 (395)
. . +.+....++....
T Consensus 256 ~~~~~~i~~~~v~~~~~~~~ 275 (389)
T 1fnn_A 256 QNGRKHIAPEDVRKSSKEVL 275 (389)
T ss_dssp HTTCSSCCHHHHHHHHHHHS
T ss_pred HhCCCCcCHHHHHHHHHHHh
Confidence 2 1 4555666655543
No 15
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.31 E-value=1.4e-11 Score=113.77 Aligned_cols=192 Identities=14% Similarity=0.087 Sum_probs=118.6
Q ss_pred cccccchhchHHHHHHHHHHhcCCCceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHHHH
Q 047930 150 NKDYEAFESRMSTLNDILDALKNPDVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFADK 229 (395)
Q Consensus 150 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 229 (395)
|.....++|++..++.+..++..+..+.+.++|++|+||||+|+.+++...........++++.+....... .++++..
T Consensus 17 p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~ 95 (323)
T 1sxj_B 17 PQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGIDV-VRNQIKH 95 (323)
T ss_dssp CSSGGGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSHHH-HHTHHHH
T ss_pred CCCHHHHHCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccccChHH-HHHHHHH
Confidence 444567899999999999998877665699999999999999999998753221111244554444333222 2222222
Q ss_pred hCCCccccchhhhHHHHHHHHhcCCeEEEEEeCCCCcc--ccchhccccCCCCCCcEEEEeecchh-hhhhcCCCcceee
Q 047930 230 LGLTLHEETESGRARSLCNRLKKEKRILVILDNIWENL--DFQAVGIPHGDGHKGSKVLLTARSLD-VLSRKMDSQQNFS 306 (395)
Q Consensus 230 l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iivTtR~~~-va~~~~~~~~~~~ 306 (395)
+..... .+..+++.++||||++... .+..+...+.....++.+|+||.... +..........++
T Consensus 96 ~~~~~~-------------~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~~i~ 162 (323)
T 1sxj_B 96 FAQKKL-------------HLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILR 162 (323)
T ss_dssp HHHBCC-------------CCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEE
T ss_pred HHhccc-------------cCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhceEEe
Confidence 110000 0002458999999997642 33444333333345678888886633 2122223456899
Q ss_pred cCCCChHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHH-HHHHHHH
Q 047930 307 FDVLKEDEAWSLFKKMAGDYIEGSEFKWVAREVAKECAGLPVS-IVTVARA 356 (395)
Q Consensus 307 l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPla-i~~i~~~ 356 (395)
+.+++.++..+++...+......- -.+....|++.|+|.|.. +..+...
T Consensus 163 ~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~l~~~~~G~~r~a~~~l~~~ 212 (323)
T 1sxj_B 163 YSKLSDEDVLKRLLQIIKLEDVKY-TNDGLEAIIFTAEGDMRQAINNLQST 212 (323)
T ss_dssp CCCCCHHHHHHHHHHHHHHHTCCB-CHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ecCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 999999999999998763211111 124578899999999954 4544433
No 16
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.20 E-value=5.3e-11 Score=110.10 Aligned_cols=190 Identities=14% Similarity=0.091 Sum_probs=116.4
Q ss_pred cccccchhchHHHHHHHHHHhcCCCceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHHHH
Q 047930 150 NKDYEAFESRMSTLNDILDALKNPDVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFADK 229 (395)
Q Consensus 150 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 229 (395)
|.....++|++..++.+..++..+..+.+.++|++|+||||+|+.+++.......-...+.++.+.......+ ...+..
T Consensus 21 p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 99 (327)
T 1iqp_A 21 PQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGINVI-REKVKE 99 (327)
T ss_dssp CCSTTTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHHHHTT-HHHHHH
T ss_pred CCCHHHhhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccCchHHH-HHHHHH
Confidence 3445668999999999999888766666999999999999999999987532210112344443322111111 111100
Q ss_pred hCCCccccchhhhHHHHHHH--HhcCCeEEEEEeCCCCc--cccchhccccCCCCCCcEEEEeecchhh-hhhcCCCcce
Q 047930 230 LGLTLHEETESGRARSLCNR--LKKEKRILVILDNIWEN--LDFQAVGIPHGDGHKGSKVLLTARSLDV-LSRKMDSQQN 304 (395)
Q Consensus 230 l~~~~~~~~~~~~~~~l~~~--l~~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR~~~v-a~~~~~~~~~ 304 (395)
.... +..+++.++|+||++.. ..+..+...+.....++++|+||....- ..........
T Consensus 100 ----------------~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~ 163 (327)
T 1iqp_A 100 ----------------FARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAI 163 (327)
T ss_dssp ----------------HHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEEE
T ss_pred ----------------HHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCcE
Confidence 0000 01146789999999764 2334444333333457788888876432 1111223458
Q ss_pred eecCCCChHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHHHHHHHHHh
Q 047930 305 FSFDVLKEDEAWSLFKKMAGDYIEGSEFKWVAREVAKECAGLPVSIVTVARAL 357 (395)
Q Consensus 305 ~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~i~~~l 357 (395)
+.+.+++.++...++...+...... --.+....|++.++|.|..+..+...+
T Consensus 164 ~~~~~l~~~~~~~~l~~~~~~~~~~-~~~~~~~~l~~~~~g~~r~~~~~l~~~ 215 (327)
T 1iqp_A 164 FRFRPLRDEDIAKRLRYIAENEGLE-LTEEGLQAILYIAEGDMRRAINILQAA 215 (327)
T ss_dssp EECCCCCHHHHHHHHHHHHHTTTCE-ECHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred EEecCCCHHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 8999999999999999877432221 113467889999999999765554433
No 17
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.13 E-value=7.1e-10 Score=102.09 Aligned_cols=188 Identities=12% Similarity=0.090 Sum_probs=116.0
Q ss_pred cccccchhchHHHHHHHHHHhcCCCceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHHHH
Q 047930 150 NKDYEAFESRMSTLNDILDALKNPDVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFADK 229 (395)
Q Consensus 150 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 229 (395)
|.....++|++..++.+..++..+..+.+.++|++|+|||++|+.+++.......-...+.++.+.......+
T Consensus 13 p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~------- 85 (319)
T 2chq_A 13 PRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVV------- 85 (319)
T ss_dssp CSSGGGSCSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTCTTTS-------
T ss_pred CCCHHHHhCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccChHHH-------
Confidence 3445678999999999999888776656899999999999999999987532110011234444432111100
Q ss_pred hCCCccccchhhhHHHHHHH--HhcCCeEEEEEeCCCCcc--ccchhccccCCCCCCcEEEEeecchh-hhhhcCCCcce
Q 047930 230 LGLTLHEETESGRARSLCNR--LKKEKRILVILDNIWENL--DFQAVGIPHGDGHKGSKVLLTARSLD-VLSRKMDSQQN 304 (395)
Q Consensus 230 l~~~~~~~~~~~~~~~l~~~--l~~~kr~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iivTtR~~~-va~~~~~~~~~ 304 (395)
.......... +..+++.++||||++... ....+...+.....++++|+||.... +..........
T Consensus 86 ----------~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~ 155 (319)
T 2chq_A 86 ----------RHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAV 155 (319)
T ss_dssp ----------SHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTCEE
T ss_pred ----------HHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhCeE
Confidence 0001111100 012567899999997542 33445444444445677888876543 22222234458
Q ss_pred eecCCCChHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHHHHHHHH
Q 047930 305 FSFDVLKEDEAWSLFKKMAGDYIEGSEFKWVAREVAKECAGLPVSIVTVAR 355 (395)
Q Consensus 305 ~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~i~~ 355 (395)
+++.+++.++...++...+......-+ .+....+++.++|.|..+.....
T Consensus 156 i~~~~~~~~~~~~~l~~~~~~~~~~i~-~~~l~~l~~~~~G~~r~~~~~l~ 205 (319)
T 2chq_A 156 FRFKPVPKEAMKKRLLEICEKEGVKIT-EDGLEALIYISGGDFRKAINALQ 205 (319)
T ss_dssp EECCCCCHHHHHHHHHHHHHTTCCCBC-HHHHHHHHHTTTTCHHHHHHHHH
T ss_pred EEecCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCCHHHHHHHHH
Confidence 999999999999999887743222211 33577888999999986554433
No 18
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.04 E-value=7.6e-09 Score=94.45 Aligned_cols=169 Identities=9% Similarity=0.080 Sum_probs=106.1
Q ss_pred chhchHHHHHHHHHHhc----CCCceEEEEEecCCCcHHHHHHHHHHHhcccCC---C--CEEEEEEeCCcCCHHHHHHH
Q 047930 155 AFESRMSTLNDILDALK----NPDVNMLGIYGMGGIGKTTLAKEVARKAENEKL---F--DQVIFVEVSQIQDIRKIQGE 225 (395)
Q Consensus 155 ~~~gr~~~~~~l~~~l~----~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~---f--~~~~wv~~s~~~~~~~~~~~ 225 (395)
.+.+|+++++++...|. .+..+.+.|+|++|+|||++++.+++....... . -.++++++....+...++..
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~ 100 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEK 100 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHH
Confidence 37799999998877664 567788999999999999999999988643211 1 13677887787888999999
Q ss_pred HHHHhCCCcc-ccchhhhHHHHHHHH--hcCCeEEEEEeCCCCccccchhccccCC-CCCCc--EEEEeecchhhhh---
Q 047930 226 FADKLGLTLH-EETESGRARSLCNRL--KKEKRILVILDNIWENLDFQAVGIPHGD-GHKGS--KVLLTARSLDVLS--- 296 (395)
Q Consensus 226 i~~~l~~~~~-~~~~~~~~~~l~~~l--~~~kr~LlVlDdv~~~~~~~~l~~~l~~-~~~gs--~iivTtR~~~va~--- 296 (395)
|++++..... .......+..+.+.+ ..+++++++||+++....-+.+...+.+ ....+ .||.++...+...
T Consensus 101 I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~~~L 180 (318)
T 3te6_A 101 IWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHNVTIREQI 180 (318)
T ss_dssp HHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSSCCCHHHH
T ss_pred HHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCcccchhhc
Confidence 9999854321 111222344444443 2367899999999765421112111110 01122 3344444322110
Q ss_pred -----hcCCCcceeecCCCChHHHHHHHHHhhC
Q 047930 297 -----RKMDSQQNFSFDVLKEDEAWSLFKKMAG 324 (395)
Q Consensus 297 -----~~~~~~~~~~l~~L~~~e~~~lf~~~~~ 324 (395)
..+ ....+.+.|++.+|..+++.+++.
T Consensus 181 ~~~v~SR~-~~~~i~F~pYt~~el~~Il~~Rl~ 212 (318)
T 3te6_A 181 NIMPSLKA-HFTEIKLNKVDKNELQQMIITRLK 212 (318)
T ss_dssp HTCHHHHT-TEEEEECCCCCHHHHHHHHHHHHH
T ss_pred chhhhccC-CceEEEeCCCCHHHHHHHHHHHHH
Confidence 011 125799999999999999998873
No 19
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.03 E-value=3.7e-09 Score=99.61 Aligned_cols=196 Identities=13% Similarity=0.159 Sum_probs=114.6
Q ss_pred ccccchhchHHHHHHHHHHhcCCC-ceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHHHH
Q 047930 151 KDYEAFESRMSTLNDILDALKNPD-VNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFADK 229 (395)
Q Consensus 151 ~~~~~~~gr~~~~~~l~~~l~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 229 (395)
.....++|++..++.+..++..++ ...+.|+|+.|+||||+|+.+.+.......+.. .+.........+...
T Consensus 13 ~~~~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~-------~~~~~~~~~~~~~~~ 85 (373)
T 1jr3_A 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA-------TPCGVCDNCREIEQG 85 (373)
T ss_dssp CSTTTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCS-------SCCSSSHHHHHHHTS
T ss_pred CchhhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCC-------CCCcccHHHHHHhcc
Confidence 334568999999999988887544 456789999999999999999987643221100 000000001111110
Q ss_pred hCCCc-----cccchhhhHHHHHHHHh----cCCeEEEEEeCCCCc--cccchhccccCCCCCCcEEEEeecchh-hhhh
Q 047930 230 LGLTL-----HEETESGRARSLCNRLK----KEKRILVILDNIWEN--LDFQAVGIPHGDGHKGSKVLLTARSLD-VLSR 297 (395)
Q Consensus 230 l~~~~-----~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR~~~-va~~ 297 (395)
..... ...........+.+.+. .+++.++||||++.. .....+...+.....+..+|++|.... +...
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~ 165 (373)
T 1jr3_A 86 RFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVT 165 (373)
T ss_dssp CCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSCHH
T ss_pred CCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCcHH
Confidence 00000 00011122334444443 246789999999654 234444433333344667777776432 2222
Q ss_pred cCCCcceeecCCCChHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHHHHHHH
Q 047930 298 KMDSQQNFSFDVLKEDEAWSLFKKMAGDYIEGSEFKWVAREVAKECAGLPVSIVTVA 354 (395)
Q Consensus 298 ~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~i~ 354 (395)
.......+++.+++.++...++...+.......+ .+....|++.++|.|..+..+.
T Consensus 166 l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~~~-~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 166 ILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHE-PRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp HHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBC-HHHHHHHHHHSSSCHHHHHHHH
T ss_pred HHhheeEeeCCCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHCCCCHHHHHHHH
Confidence 2334578999999999999999877632111111 2357789999999999877654
No 20
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.98 E-value=4.3e-09 Score=97.17 Aligned_cols=192 Identities=14% Similarity=0.066 Sum_probs=116.6
Q ss_pred cccchhchHHHHHHHHHHhc-----CCCceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHH
Q 047930 152 DYEAFESRMSTLNDILDALK-----NPDVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEF 226 (395)
Q Consensus 152 ~~~~~~gr~~~~~~l~~~l~-----~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 226 (395)
....|+|++..+..+..++. ......+.|+|++|+|||++|+.+++.... ..++++.+......++.
T Consensus 10 ~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~~-----~~~~~~~~~~~~~~~l~--- 81 (324)
T 1hqc_A 10 TLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGV-----NLRVTSGPAIEKPGDLA--- 81 (324)
T ss_dssp STTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHTC-----CEEEECTTTCCSHHHHH---
T ss_pred cHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhCC-----CEEEEeccccCChHHHH---
Confidence 45678999988888777664 234467889999999999999999987642 13445444332222221
Q ss_pred HHHhCCCccccchhhhHHHHHHHHhc--CCeEEEEEeCCCCcc--ccchhccccC--------C----------CCCCcE
Q 047930 227 ADKLGLTLHEETESGRARSLCNRLKK--EKRILVILDNIWENL--DFQAVGIPHG--------D----------GHKGSK 284 (395)
Q Consensus 227 ~~~l~~~~~~~~~~~~~~~l~~~l~~--~kr~LlVlDdv~~~~--~~~~l~~~l~--------~----------~~~gs~ 284 (395)
..+.. .+..+|+|||+.... ....+...+. . ..++.+
T Consensus 82 ---------------------~~l~~~~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~ 140 (324)
T 1hqc_A 82 ---------------------AILANSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFT 140 (324)
T ss_dssp ---------------------HHHTTTCCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCE
T ss_pred ---------------------HHHHHhccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEE
Confidence 12211 345688999997642 1111111110 0 012455
Q ss_pred EEEeecchh-hhhhcCCCc-ceeecCCCChHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHHHHHHHHHhh----
Q 047930 285 VLLTARSLD-VLSRKMDSQ-QNFSFDVLKEDEAWSLFKKMAGDYIEGSEFKWVAREVAKECAGLPVSIVTVARALR---- 358 (395)
Q Consensus 285 iivTtR~~~-va~~~~~~~-~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~i~~~l~---- 358 (395)
+|.||.... +........ ..+.+.+++.++...++...+......- -.+....+++.|+|.|..+..+...+.
T Consensus 141 ~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~-~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~ 219 (324)
T 1hqc_A 141 LIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRI-TEEAALEIGRRSRGTMRVAKRLFRRVRDFAQ 219 (324)
T ss_dssp EEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCCC-CHHHHHHHHHHSCSCHHHHHHHHHHHTTTST
T ss_pred EEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 666666432 211112222 5899999999999999988874322211 234678899999999998877765542
Q ss_pred --C--C-CHHHHHHHHHHhc
Q 047930 359 --N--K-RLFEWKDALEQLR 373 (395)
Q Consensus 359 --~--~-~~~~w~~~l~~l~ 373 (395)
. . +.+....++..+.
T Consensus 220 ~~~~~~i~~~~~~~~~~~~~ 239 (324)
T 1hqc_A 220 VAGEEVITRERALEALAALG 239 (324)
T ss_dssp TTSCSCCCHHHHHHHHHHHT
T ss_pred HhcCCCCCHHHHHHHHHHhc
Confidence 1 1 5566777766653
No 21
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.98 E-value=2.1e-09 Score=90.90 Aligned_cols=154 Identities=13% Similarity=0.140 Sum_probs=88.1
Q ss_pred cccchhchHHHHHHHHHHhcCCCceEEEEEecCCCcHHHHHHHHHHHhcccC-----CCCEEEEEEeCCcCCHHHHHHHH
Q 047930 152 DYEAFESRMSTLNDILDALKNPDVNMLGIYGMGGIGKTTLAKEVARKAENEK-----LFDQVIFVEVSQIQDIRKIQGEF 226 (395)
Q Consensus 152 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~-----~f~~~~wv~~s~~~~~~~~~~~i 226 (395)
....++||+++++.+.+++.....+.+.|+|++|+|||+||+.+++...... .....++++++. +.
T Consensus 20 ~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~--- 90 (195)
T 1jbk_A 20 KLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGA------LV--- 90 (195)
T ss_dssp CSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHH------HH---
T ss_pred cccccccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHH------Hh---
Confidence 3456889999999999999877677889999999999999999998753311 012344443321 10
Q ss_pred HHHhCCCccccchhhhHHHHHHHH-hcCCeEEEEEeCCCCcc---------ccchhccccCCCCCCcEEEEeecchhh--
Q 047930 227 ADKLGLTLHEETESGRARSLCNRL-KKEKRILVILDNIWENL---------DFQAVGIPHGDGHKGSKVLLTARSLDV-- 294 (395)
Q Consensus 227 ~~~l~~~~~~~~~~~~~~~l~~~l-~~~kr~LlVlDdv~~~~---------~~~~l~~~l~~~~~gs~iivTtR~~~v-- 294 (395)
............+..+.+.+ ..+++.+|||||++... .+..+...+... .+..+|.||.....
T Consensus 91 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~-~~~~~i~~~~~~~~~~ 165 (195)
T 1jbk_A 91 ----AGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR-GELHCVGATTLDEYRQ 165 (195)
T ss_dssp ----TTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHHT-TSCCEEEEECHHHHHH
T ss_pred ----ccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhcc-CCeEEEEeCCHHHHHH
Confidence 00000000111223333333 23567899999996542 112211121112 24456766665431
Q ss_pred ----hhhcCCCcceeecCCCChHHHHHHH
Q 047930 295 ----LSRKMDSQQNFSFDVLKEDEAWSLF 319 (395)
Q Consensus 295 ----a~~~~~~~~~~~l~~L~~~e~~~lf 319 (395)
..........+.+.+++.++..+++
T Consensus 166 ~~~~~~~l~~r~~~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 166 YIEKDAALERRFQKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp HTTTCHHHHTTEEEEECCCCCHHHHHTTC
T ss_pred HHhcCHHHHHHhceeecCCCCHHHHHHHh
Confidence 1112223346889999988877654
No 22
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.89 E-value=3.7e-08 Score=89.14 Aligned_cols=201 Identities=16% Similarity=0.205 Sum_probs=115.9
Q ss_pred ccccchhchHHHHHHHHHHhcC-------------CCceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcC
Q 047930 151 KDYEAFESRMSTLNDILDALKN-------------PDVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQ 217 (395)
Q Consensus 151 ~~~~~~~gr~~~~~~l~~~l~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~ 217 (395)
.....++|.+..++.|.+.+.. .....+.|+|++|+|||+||+.+++..... .+.++.+.-.
T Consensus 14 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~-----~~~v~~~~~~ 88 (285)
T 3h4m_A 14 VRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNAT-----FIRVVGSELV 88 (285)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCE-----EEEEEGGGGC
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCC-----EEEEehHHHH
Confidence 3456788998888888776631 345678999999999999999999875421 3334332211
Q ss_pred CHHHHHHHHHHHhCCCccccchhhhHHHHHHHHhcCCeEEEEEeCCCCcc------------c----cchhccccC--CC
Q 047930 218 DIRKIQGEFADKLGLTLHEETESGRARSLCNRLKKEKRILVILDNIWENL------------D----FQAVGIPHG--DG 279 (395)
Q Consensus 218 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~------------~----~~~l~~~l~--~~ 279 (395)
. ... .........+.......++.+|+|||++... . +..+...+. ..
T Consensus 89 ~--------------~~~-~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~ 153 (285)
T 3h4m_A 89 K--------------KFI-GEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDA 153 (285)
T ss_dssp C--------------CST-THHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCS
T ss_pred H--------------hcc-chHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCC
Confidence 1 000 0011223334444444567899999996431 1 111111111 22
Q ss_pred CCCcEEEEeecchhhh-hhcC---CCcceeecCCCChHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCC-chHHHHHHH
Q 047930 280 HKGSKVLLTARSLDVL-SRKM---DSQQNFSFDVLKEDEAWSLFKKMAGDYIEGSEFKWVAREVAKECAG-LPVSIVTVA 354 (395)
Q Consensus 280 ~~gs~iivTtR~~~va-~~~~---~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~G-lPlai~~i~ 354 (395)
..+..||.||...... .... .....+.+.+.+.++..++|...+.......+. ....++..+.| .|-.|..+.
T Consensus 154 ~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~--~~~~l~~~~~g~~~~~i~~l~ 231 (285)
T 3h4m_A 154 RGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDV--NLEEIAKMTEGCVGAELKAIC 231 (285)
T ss_dssp SSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTC--CHHHHHHHCTTCCHHHHHHHH
T ss_pred CCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcC--CHHHHHHHcCCCCHHHHHHHH
Confidence 3456777787654321 1111 223479999999999999999888543222211 14678888888 454555443
Q ss_pred HH------hhC--C-CHHHHHHHHHHhc
Q 047930 355 RA------LRN--K-RLFEWKDALEQLR 373 (395)
Q Consensus 355 ~~------l~~--~-~~~~w~~~l~~l~ 373 (395)
.. .+. . +.+....+++.+.
T Consensus 232 ~~a~~~a~~~~~~~I~~~d~~~al~~~~ 259 (285)
T 3h4m_A 232 TEAGMNAIRELRDYVTMDDFRKAVEKIM 259 (285)
T ss_dssp HHHHHHHHHTTCSSBCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCcCCHHHHHHHHHHHH
Confidence 22 122 2 6777777777654
No 23
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.87 E-value=8.2e-09 Score=96.44 Aligned_cols=198 Identities=13% Similarity=0.121 Sum_probs=113.5
Q ss_pred cccccchhchHHHHHHHHHHhcCCCceEEEEEecCCCcHHHHHHHHHHHhcccCCC-CEEEEEEeCCcCCHHHHHHHHHH
Q 047930 150 NKDYEAFESRMSTLNDILDALKNPDVNMLGIYGMGGIGKTTLAKEVARKAENEKLF-DQVIFVEVSQIQDIRKIQGEFAD 228 (395)
Q Consensus 150 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f-~~~~wv~~s~~~~~~~~~~~i~~ 228 (395)
|.....++|++..++.+..++..+..+.+.++|++|+||||+|+.+.+.......+ ..+..++.+.......+ .+...
T Consensus 33 p~~~~~i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 111 (353)
T 1sxj_D 33 PKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIV-REKVK 111 (353)
T ss_dssp CSSTTTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHH-TTHHH
T ss_pred CCCHHHhhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHHH-HHHHH
Confidence 34456788999999999999887765558999999999999999998874321001 11334444433333222 22221
Q ss_pred HhCCCccccchhhhHHHHHHHHhcCCeEEEEEeCCCCcc--ccchhccccCCCCCCcEEEEeecchh-hhhhcCCCccee
Q 047930 229 KLGLTLHEETESGRARSLCNRLKKEKRILVILDNIWENL--DFQAVGIPHGDGHKGSKVLLTARSLD-VLSRKMDSQQNF 305 (395)
Q Consensus 229 ~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iivTtR~~~-va~~~~~~~~~~ 305 (395)
.+........... .......+++-+|++|++.... ....+...+.......++|++|.... +..........+
T Consensus 112 ~~~~~~~~~~~~~----~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~~~i 187 (353)
T 1sxj_D 112 NFARLTVSKPSKH----DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSKF 187 (353)
T ss_dssp HHHHSCCCCCCTT----HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHSEEE
T ss_pred HHhhhcccccchh----hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccCceE
Confidence 1110000000000 0001112355799999986542 22333333322334567777775432 211112233588
Q ss_pred ecCCCChHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHHHHHH
Q 047930 306 SFDVLKEDEAWSLFKKMAGDYIEGSEFKWVAREVAKECAGLPVSIVTV 353 (395)
Q Consensus 306 ~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~i 353 (395)
.+.+++.++....+...+......- -.+..+.|++.++|.|-.+..+
T Consensus 188 ~~~~~~~~~~~~~l~~~~~~~~~~i-~~~~l~~l~~~~~G~~r~~~~~ 234 (353)
T 1sxj_D 188 RFKALDASNAIDRLRFISEQENVKC-DDGVLERILDISAGDLRRGITL 234 (353)
T ss_dssp ECCCCCHHHHHHHHHHHHHTTTCCC-CHHHHHHHHHHTSSCHHHHHHH
T ss_pred EeCCCCHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHcCCCHHHHHHH
Confidence 9999999999999998774322111 1346789999999999875544
No 24
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.84 E-value=2.5e-08 Score=98.04 Aligned_cols=208 Identities=13% Similarity=0.098 Sum_probs=117.1
Q ss_pred ccccccchhchHHHHHHHHHHhcC-----------------CCceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEE
Q 047930 149 SNKDYEAFESRMSTLNDILDALKN-----------------PDVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFV 211 (395)
Q Consensus 149 ~~~~~~~~~gr~~~~~~l~~~l~~-----------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv 211 (395)
.|.....++|++..++.+..++.. +..+.+.|+|++|+||||+|+.+++... + .++.+
T Consensus 34 rP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~----~-~~i~i 108 (516)
T 1sxj_A 34 APTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELG----Y-DILEQ 108 (516)
T ss_dssp CCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTT----C-EEEEE
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcC----C-CEEEE
Confidence 345567789999999999998864 1346899999999999999999998763 2 24555
Q ss_pred EeCCcCCHHHHHHHHHHHhCCCccccchhhhHHHHHHHH-hcCCeEEEEEeCCCCccc-----cchhccccCCCCCCcEE
Q 047930 212 EVSQIQDIRKIQGEFADKLGLTLHEETESGRARSLCNRL-KKEKRILVILDNIWENLD-----FQAVGIPHGDGHKGSKV 285 (395)
Q Consensus 212 ~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l-~~~kr~LlVlDdv~~~~~-----~~~l~~~l~~~~~gs~i 285 (395)
+.+...... +....+......... ........+.+ ..+++.+|+||+++.... +..+...+. . .+..|
T Consensus 109 n~s~~~~~~-~~~~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~-~-~~~~i 182 (516)
T 1sxj_A 109 NASDVRSKT-LLNAGVKNALDNMSV---VGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCR-K-TSTPL 182 (516)
T ss_dssp CTTSCCCHH-HHHHTGGGGTTBCCS---TTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHH-H-CSSCE
T ss_pred eCCCcchHH-HHHHHHHHHhccccH---HHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHH-h-cCCCE
Confidence 655544433 222222221110000 00000000000 125688999999975421 122222211 1 23346
Q ss_pred EEeecchhh--hhhcCCCcceeecCCCChHHHHHHHHHhhCC--CCCCCchHHHHHHHHHHcCCc-hHHHHHHHHHhh-C
Q 047930 286 LLTARSLDV--LSRKMDSQQNFSFDVLKEDEAWSLFKKMAGD--YIEGSEFKWVAREVAKECAGL-PVSIVTVARALR-N 359 (395)
Q Consensus 286 ivTtR~~~v--a~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~--~~~~~~~~~~~~~i~~~c~Gl-Plai~~i~~~l~-~ 359 (395)
|+++.+... ..........+.+.+++.++..+++...+.. ...+++ ....|++.++|. +.++..+..+.. .
T Consensus 183 Ili~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~~---~l~~la~~s~GdiR~~i~~L~~~~~~~ 259 (516)
T 1sxj_A 183 ILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPN---VIDRLIQTTRGDIRQVINLLSTISTTT 259 (516)
T ss_dssp EEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCTT---HHHHHHHHTTTCHHHHHHHHTHHHHHS
T ss_pred EEEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCHH---HHHHHHHHcCCcHHHHHHHHHHHHhcC
Confidence 655554221 1122344568999999999999999877632 122232 467899999994 555555543322 2
Q ss_pred C--CHHHHHHHHH
Q 047930 360 K--RLFEWKDALE 370 (395)
Q Consensus 360 ~--~~~~w~~~l~ 370 (395)
+ +.+.-+.++.
T Consensus 260 ~~It~~~v~~~~~ 272 (516)
T 1sxj_A 260 KTINHENINEISK 272 (516)
T ss_dssp SCCCTTHHHHHHH
T ss_pred CCCchHHHHHHHH
Confidence 1 4444444444
No 25
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.82 E-value=1.9e-07 Score=83.93 Aligned_cols=182 Identities=14% Similarity=0.164 Sum_probs=99.2
Q ss_pred CCCceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCccccchhhhHHHHHHHHh
Q 047930 172 NPDVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFADKLGLTLHEETESGRARSLCNRLK 251 (395)
Q Consensus 172 ~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~ 251 (395)
....+.+.|+|++|+|||+||+.+++.... . .+.++.+... ++. ...........+.+...
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la~~ia~~~~~----~-~~~i~~~~~~------------~g~--~~~~~~~~~~~~~~~~~ 121 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALAAKIAEESNF----P-FIKICSPDKM------------IGF--SETAKCQAMKKIFDDAY 121 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHHHHHHHHHTC----S-EEEEECGGGC------------TTC--CHHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHhCC----C-EEEEeCHHHh------------cCC--chHHHHHHHHHHHHHHH
Confidence 455678999999999999999999987532 1 2233332210 010 00000112223333333
Q ss_pred cCCeEEEEEeCCCCc-----------ccc-chhccccC---CCCCCcEEEEeecchhhhhh--cCCC-cceeecCCCCh-
Q 047930 252 KEKRILVILDNIWEN-----------LDF-QAVGIPHG---DGHKGSKVLLTARSLDVLSR--KMDS-QQNFSFDVLKE- 312 (395)
Q Consensus 252 ~~kr~LlVlDdv~~~-----------~~~-~~l~~~l~---~~~~gs~iivTtR~~~va~~--~~~~-~~~~~l~~L~~- 312 (395)
..+..+|+|||++.. ..+ ..+...+. .......||.||........ .... ...+++++++.
T Consensus 122 ~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r 201 (272)
T 1d2n_A 122 KSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNIATG 201 (272)
T ss_dssp TSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCTTTSSEEEECCCEEEH
T ss_pred hcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhhhcccceEEcCCCccHH
Confidence 356899999998542 111 11212111 12233456667766533211 1222 45789999998
Q ss_pred HHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCC------chHHHHHHHHHhhCCCHHHHHHHHHHhcCCCCC
Q 047930 313 DEAWSLFKKMAGDYIEGSEFKWVAREVAKECAG------LPVSIVTVARALRNKRLFEWKDALEQLRRPSST 378 (395)
Q Consensus 313 ~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~G------lPlai~~i~~~l~~~~~~~w~~~l~~l~~~~~~ 378 (395)
++...++.+... .+ .+....|++.+.| ++-++..+-..-...+...+..+++.+......
T Consensus 202 ~~i~~i~~~~~~---~~---~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~~~~~~~~~~~~~~~l~~~~~~ 267 (272)
T 1d2n_A 202 EQLLEALELLGN---FK---DKERTTIAQQVKGKKVWIGIKKLLMLIEMSLQMDPEYRVRKFLALLREEGAS 267 (272)
T ss_dssp HHHHHHHHHHTC---SC---HHHHHHHHHHHTTSEEEECHHHHHHHHHHHTTSCGGGHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHhcCC---CC---HHHHHHHHHHhcCCCccccHHHHHHHHHHHhhhchHHHHHHHHHHHHHcCCc
Confidence 676777665421 11 2356788999988 344444443333333667888888877655433
No 26
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.80 E-value=3.1e-08 Score=92.59 Aligned_cols=197 Identities=13% Similarity=0.108 Sum_probs=109.0
Q ss_pred cccccchhchHHHHHHHHHHh-cCCCceEEEEEecCCCcHHHHHHHHHHHhcccCC----CCE-----------------
Q 047930 150 NKDYEAFESRMSTLNDILDAL-KNPDVNMLGIYGMGGIGKTTLAKEVARKAENEKL----FDQ----------------- 207 (395)
Q Consensus 150 ~~~~~~~~gr~~~~~~l~~~l-~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~----f~~----------------- 207 (395)
|.....++|++..++.+..++ ..++.+.+.|+|+.|+||||+++.+......... ++.
T Consensus 10 P~~~~~~vg~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~ 89 (354)
T 1sxj_E 10 PKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVS 89 (354)
T ss_dssp CCSGGGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEE
T ss_pred CCCHHHhcCCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeec
Confidence 445567889999999998888 6555545899999999999999999885321110 110
Q ss_pred ---EEEEEeCCcC-CHHHHHHHHHHHhCCCccccchhhhHHHHHHHHhcCCeEEEEEeCCCCcc--ccchhccccCCCCC
Q 047930 208 ---VIFVEVSQIQ-DIRKIQGEFADKLGLTLHEETESGRARSLCNRLKKEKRILVILDNIWENL--DFQAVGIPHGDGHK 281 (395)
Q Consensus 208 ---~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~--~~~~l~~~l~~~~~ 281 (395)
.+.+..+... ......++++..+.....-... . .+ ..+. +++-++|||++...+ ....+...+.....
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~---~-~l-s~l~-~~~~vlilDE~~~L~~~~~~~L~~~le~~~~ 163 (354)
T 1sxj_E 90 SPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQ---D-SK-DGLA-HRYKCVIINEANSLTKDAQAALRRTMEKYSK 163 (354)
T ss_dssp CSSEEEECCC----CCHHHHHHHHHHHTTTTC------------------CCEEEEEECTTSSCHHHHHHHHHHHHHSTT
T ss_pred ccceEEecHhhcCCcchHHHHHHHHHHHHhcccccc---c-cc-cccC-CCCeEEEEeCccccCHHHHHHHHHHHHhhcC
Confidence 1111111100 0000122222222111000000 0 00 0011 356799999997642 22233333322234
Q ss_pred CcEEEEeecch-hhhhhcCCCcceeecCCCChHHHHHHHHHhhCCCC--CC-CchHHHHHHHHHHcCCchHHHHHHHH
Q 047930 282 GSKVLLTARSL-DVLSRKMDSQQNFSFDVLKEDEAWSLFKKMAGDYI--EG-SEFKWVAREVAKECAGLPVSIVTVAR 355 (395)
Q Consensus 282 gs~iivTtR~~-~va~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~--~~-~~~~~~~~~i~~~c~GlPlai~~i~~ 355 (395)
++.+|++|.+. .+..........+++.+++.++....+...+.... .+ + +....|++.++|.+-.+..+..
T Consensus 164 ~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~---~~l~~i~~~~~G~~r~a~~~l~ 238 (354)
T 1sxj_E 164 NIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLETK---DILKRIAQASNGNLRVSLLMLE 238 (354)
T ss_dssp TEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEECCS---HHHHHHHHHHTTCHHHHHHHHT
T ss_pred CCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCCCCcH---HHHHHHHHHcCCCHHHHHHHHH
Confidence 67788877653 23222234457899999999999999988763211 12 2 3567899999999886655543
No 27
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.78 E-value=1.2e-07 Score=91.18 Aligned_cols=182 Identities=14% Similarity=0.147 Sum_probs=108.2
Q ss_pred cccccchhchHHHH---HHHHHHhcCCCceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHH
Q 047930 150 NKDYEAFESRMSTL---NDILDALKNPDVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEF 226 (395)
Q Consensus 150 ~~~~~~~~gr~~~~---~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 226 (395)
+.....++|.+..+ ..|...+..+....+.|+|++|+||||||+.+.+..... | ..++... ....+ .+.+
T Consensus 22 P~~l~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~~~--f---~~l~a~~-~~~~~-ir~~ 94 (447)
T 3pvs_A 22 PENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANAD--V---ERISAVT-SGVKE-IREA 94 (447)
T ss_dssp CCSTTTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTTCE--E---EEEETTT-CCHHH-HHHH
T ss_pred CCCHHHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhCCC--e---EEEEecc-CCHHH-HHHH
Confidence 34556788888777 667777776777789999999999999999999876421 2 2222221 12222 1111
Q ss_pred HHHhCCCccccchhhhHHHHHHHHhcCCeEEEEEeCCCCcc--ccchhccccCCCCCCcEEEE-eecchh--hhhhcCCC
Q 047930 227 ADKLGLTLHEETESGRARSLCNRLKKEKRILVILDNIWENL--DFQAVGIPHGDGHKGSKVLL-TARSLD--VLSRKMDS 301 (395)
Q Consensus 227 ~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iiv-TtR~~~--va~~~~~~ 301 (395)
+. ........+++.+|+||++.... ..+.+...+.. . ...+|. ||.+.. +.......
T Consensus 95 ~~----------------~a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~-~-~v~lI~att~n~~~~l~~aL~sR 156 (447)
T 3pvs_A 95 IE----------------RARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED-G-TITFIGATTENPSFELNSALLSR 156 (447)
T ss_dssp HH----------------HHHHHHHTTCCEEEEEETTTCC------CCHHHHHT-T-SCEEEEEESSCGGGSSCHHHHTT
T ss_pred HH----------------HHHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhc-C-ceEEEecCCCCcccccCHHHhCc
Confidence 11 11111123578999999997542 33333333322 2 233443 444432 21223345
Q ss_pred cceeecCCCChHHHHHHHHHhhCCC------CCCCchHHHHHHHHHHcCCchHHHHHHHHH
Q 047930 302 QQNFSFDVLKEDEAWSLFKKMAGDY------IEGSEFKWVAREVAKECAGLPVSIVTVARA 356 (395)
Q Consensus 302 ~~~~~l~~L~~~e~~~lf~~~~~~~------~~~~~~~~~~~~i~~~c~GlPlai~~i~~~ 356 (395)
...+.+.+++.++...++.+.+... ....--.+..+.|++.++|.+-.+..+...
T Consensus 157 ~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~Le~ 217 (447)
T 3pvs_A 157 ARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEM 217 (447)
T ss_dssp EEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHHHH
T ss_pred eeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 5689999999999999999887421 111122346788999999998866655443
No 28
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.77 E-value=3.5e-07 Score=81.49 Aligned_cols=182 Identities=17% Similarity=0.208 Sum_probs=99.2
Q ss_pred ccchhchHHHHHHHHHH---hcC---------CCceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHH
Q 047930 153 YEAFESRMSTLNDILDA---LKN---------PDVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIR 220 (395)
Q Consensus 153 ~~~~~gr~~~~~~l~~~---l~~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~ 220 (395)
...++|.+..++.+.+. +.. ...+.+.|+|++|+|||++|+.+++..... .+.++.+.-.+.
T Consensus 5 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~-----~~~~~~~~~~~~- 78 (262)
T 2qz4_A 5 FKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVP-----FLAMAGAEFVEV- 78 (262)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCC-----EEEEETTTTSSS-
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC-----EEEechHHHHhh-
Confidence 34566776665555443 322 234568899999999999999999876421 344444432110
Q ss_pred HHHHHHHHHhCCCccccchhhhHHHHHHHHhcCCeEEEEEeCCCCcc-------------c----cchhccccC--CCCC
Q 047930 221 KIQGEFADKLGLTLHEETESGRARSLCNRLKKEKRILVILDNIWENL-------------D----FQAVGIPHG--DGHK 281 (395)
Q Consensus 221 ~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~-------------~----~~~l~~~l~--~~~~ 281 (395)
... ........+.+......+.+|+|||++... . ...+...+. ....
T Consensus 79 -------------~~~-~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~ 144 (262)
T 2qz4_A 79 -------------IGG-LGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTD 144 (262)
T ss_dssp -------------STT-HHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTC
T ss_pred -------------ccC-hhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCC
Confidence 000 011122333333333567999999997541 1 111211111 1223
Q ss_pred CcEEEEeecchhhh-hhcC---CCcceeecCCCChHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchH-HHHHHH
Q 047930 282 GSKVLLTARSLDVL-SRKM---DSQQNFSFDVLKEDEAWSLFKKMAGDYIEGSEFKWVAREVAKECAGLPV-SIVTVA 354 (395)
Q Consensus 282 gs~iivTtR~~~va-~~~~---~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPl-ai~~i~ 354 (395)
+..||.||...... .... .....+.+.+.+.++-.+++...+...............+++.+.|.+- .|..+.
T Consensus 145 ~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~ 222 (262)
T 2qz4_A 145 HVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANIC 222 (262)
T ss_dssp CEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHH
T ss_pred CEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHH
Confidence 55667677553321 1111 1235788999999999999988774322222222235788889988754 555443
No 29
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.77 E-value=1.5e-08 Score=89.03 Aligned_cols=174 Identities=13% Similarity=0.110 Sum_probs=102.0
Q ss_pred ccchhch---HHHHHHHHHHhcCCCceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHHHH
Q 047930 153 YEAFESR---MSTLNDILDALKNPDVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFADK 229 (395)
Q Consensus 153 ~~~~~gr---~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 229 (395)
...|+++ ...++.+..+...+..+.+.|+|++|+||||||+.+++..... ...+.|++++..... +
T Consensus 27 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~--~~~~~~~~~~~~~~~------~--- 95 (242)
T 3bos_A 27 FTSYYPAAGNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANEL--ERRSFYIPLGIHASI------S--- 95 (242)
T ss_dssp TTTSCC--CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEEGGGGGGS------C---
T ss_pred hhhccCCCCCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEEHHHHHHH------H---
Confidence 3456652 3556666666655566789999999999999999999876543 234566665432110 0
Q ss_pred hCCCccccchhhhHHHHHHHHhcCCeEEEEEeCCCCccc----cchhccccCC-CCCC-cEEEEeecchhhh-----hhc
Q 047930 230 LGLTLHEETESGRARSLCNRLKKEKRILVILDNIWENLD----FQAVGIPHGD-GHKG-SKVLLTARSLDVL-----SRK 298 (395)
Q Consensus 230 l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~----~~~l~~~l~~-~~~g-s~iivTtR~~~va-----~~~ 298 (395)
. ...+.+ .++.+|||||++.... ...+...+.. ...+ .++|+||+...-. ...
T Consensus 96 -----~---------~~~~~~--~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~l 159 (242)
T 3bos_A 96 -----T---------ALLEGL--EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPDL 159 (242)
T ss_dssp -----G---------GGGTTG--GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHHH
T ss_pred -----H---------HHHHhc--cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhhh
Confidence 0 000111 2457999999965421 1222221100 0112 2477777643210 001
Q ss_pred C---CCcceeecCCCChHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHHHHHHH
Q 047930 299 M---DSQQNFSFDVLKEDEAWSLFKKMAGDYIEGSEFKWVAREVAKECAGLPVSIVTVA 354 (395)
Q Consensus 299 ~---~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~i~ 354 (395)
. .....+++.+++.++..+++...+...... --.+..+.+++.++|.+-.+..+.
T Consensus 160 ~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~l~~~~~g~~r~l~~~l 217 (242)
T 3bos_A 160 VSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQ-LPEDVGRFLLNRMARDLRTLFDVL 217 (242)
T ss_dssp HHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTCC-CCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred hhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHccCCHHHHHHHH
Confidence 1 112689999999999999999877421111 123467889999999987766544
No 30
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.73 E-value=6.8e-08 Score=89.15 Aligned_cols=182 Identities=10% Similarity=0.068 Sum_probs=104.6
Q ss_pred cccccchhchHHHHHHHHHHhcCCC-ceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHHH
Q 047930 150 NKDYEAFESRMSTLNDILDALKNPD-VNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFAD 228 (395)
Q Consensus 150 ~~~~~~~~gr~~~~~~l~~~l~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 228 (395)
|.....++|++..+..+..++..+. ..++.+.|++|+|||++|+.+.+.... .++.++.+.. ... .++..+.
T Consensus 22 P~~~~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l~~-----~~~~i~~~~~-~~~-~i~~~~~ 94 (324)
T 3u61_B 22 PSTIDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVNA-----DMMFVNGSDC-KID-FVRGPLT 94 (324)
T ss_dssp CCSTTTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHTTE-----EEEEEETTTC-CHH-HHHTHHH
T ss_pred CCCHHHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHhCC-----CEEEEccccc-CHH-HHHHHHH
Confidence 4556778999999999999888555 356777888999999999999987632 2455555432 222 2222221
Q ss_pred HhCCCccccchhhhHHHHHHHHhcCCeEEEEEeCCCCcc---ccchhccccCCCCCCcEEEEeecchh-hhhhcCCCcce
Q 047930 229 KLGLTLHEETESGRARSLCNRLKKEKRILVILDNIWENL---DFQAVGIPHGDGHKGSKVLLTARSLD-VLSRKMDSQQN 304 (395)
Q Consensus 229 ~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~---~~~~l~~~l~~~~~gs~iivTtR~~~-va~~~~~~~~~ 304 (395)
....... ..+++.+|+|||++... ....+...+.....+.++|+||.... +..........
T Consensus 95 ~~~~~~~---------------~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~~~ 159 (324)
T 3u61_B 95 NFASAAS---------------FDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRCRV 159 (324)
T ss_dssp HHHHBCC---------------CSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHSEE
T ss_pred HHHhhcc---------------cCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhCcE
Confidence 1100000 01367899999997653 22333322222223567888776543 11111122357
Q ss_pred eecCCCChHHHHHHHH-------HhhCCCCCCCchHHHHHHHHHHcCCchHHHHHH
Q 047930 305 FSFDVLKEDEAWSLFK-------KMAGDYIEGSEFKWVAREVAKECAGLPVSIVTV 353 (395)
Q Consensus 305 ~~l~~L~~~e~~~lf~-------~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~i 353 (395)
+++.+++.++-.+++. ..+......-.-.+....|++.++|.+-.+...
T Consensus 160 i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gd~R~a~~~ 215 (324)
T 3u61_B 160 ITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFPDFRKTIGE 215 (324)
T ss_dssp EECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCSCTTHHHHH
T ss_pred EEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCCCHHHHHHH
Confidence 9999999888544332 222211111111246788999999987754433
No 31
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.70 E-value=7.7e-07 Score=83.23 Aligned_cols=184 Identities=9% Similarity=0.062 Sum_probs=105.0
Q ss_pred ccccchhchHHHHHHHHHHhc------------CCCceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCC
Q 047930 151 KDYEAFESRMSTLNDILDALK------------NPDVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQD 218 (395)
Q Consensus 151 ~~~~~~~gr~~~~~~l~~~l~------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~ 218 (395)
.....++|.+..++.|.+.+. ....+.+.|+|++|+|||+||+.+++.... ..+.++.+.-..
T Consensus 81 ~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~-----~~~~i~~~~l~~ 155 (357)
T 3d8b_A 81 VNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGA-----TFFSISASSLTS 155 (357)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTTC-----EEEEEEGGGGCC
T ss_pred CCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcCC-----eEEEEehHHhhc
Confidence 334568898888888777653 134567889999999999999999987532 234555443211
Q ss_pred HHHHHHHHHHHhCCCccccchhhhHHHHHHHHhcCCeEEEEEeCCCCcc-------------ccchhccccC----CCCC
Q 047930 219 IRKIQGEFADKLGLTLHEETESGRARSLCNRLKKEKRILVILDNIWENL-------------DFQAVGIPHG----DGHK 281 (395)
Q Consensus 219 ~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~-------------~~~~l~~~l~----~~~~ 281 (395)
. ... ........+.......++.+|+||+++... ....+...+. ....
T Consensus 156 ~--------------~~g-~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~ 220 (357)
T 3d8b_A 156 K--------------WVG-EGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSED 220 (357)
T ss_dssp S--------------STT-HHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCC
T ss_pred c--------------ccc-hHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCC
Confidence 0 000 011122333333333567999999995321 0112211111 1123
Q ss_pred CcEEEEeecchh-hhhhcC-CCcceeecCCCChHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCC-chHHHHHHHH
Q 047930 282 GSKVLLTARSLD-VLSRKM-DSQQNFSFDVLKEDEAWSLFKKMAGDYIEGSEFKWVAREVAKECAG-LPVSIVTVAR 355 (395)
Q Consensus 282 gs~iivTtR~~~-va~~~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~G-lPlai~~i~~ 355 (395)
+..||.||.... +..... .....+.+...+.++..+++...+......- .......|++.+.| .|-.|..+..
T Consensus 221 ~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l-~~~~l~~la~~t~G~s~~dl~~l~~ 296 (357)
T 3d8b_A 221 RILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCL-SEEEIEQIVQQSDAFSGADMTQLCR 296 (357)
T ss_dssp CEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBCC-CHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCCc-cHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 455666665432 211111 2234778889999999999988774321111 12357789999999 5666666544
No 32
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.69 E-value=7.2e-07 Score=82.22 Aligned_cols=183 Identities=18% Similarity=0.153 Sum_probs=106.4
Q ss_pred ccccchhchHHHHHHHHHHhc------------CCCceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCC
Q 047930 151 KDYEAFESRMSTLNDILDALK------------NPDVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQD 218 (395)
Q Consensus 151 ~~~~~~~gr~~~~~~l~~~l~------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~ 218 (395)
.....++|.+..++.|.+.+. ....+.+.++|++|+|||+||+.+++..... .+.++.+
T Consensus 15 ~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~-----~~~v~~~---- 85 (322)
T 3eie_A 15 VKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANST-----FFSVSSS---- 85 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCE-----EEEEEHH----
T ss_pred CCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCC-----EEEEchH----
Confidence 445678898888888877662 1124568899999999999999999875421 2333321
Q ss_pred HHHHHHHHHHHhCCCccccchhhhHHHHHHHHhcCCeEEEEEeCCCCccc-------------cchhcc---ccCCCCCC
Q 047930 219 IRKIQGEFADKLGLTLHEETESGRARSLCNRLKKEKRILVILDNIWENLD-------------FQAVGI---PHGDGHKG 282 (395)
Q Consensus 219 ~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~-------------~~~l~~---~l~~~~~g 282 (395)
++.. . .. ......+..+.+.....++.+|+||+++.... ...+.. .+.....+
T Consensus 86 --~l~~----~----~~-g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 154 (322)
T 3eie_A 86 --DLVS----K----WM-GESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQG 154 (322)
T ss_dssp --HHHT----T----TG-GGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCC
T ss_pred --HHhh----c----cc-chHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCc
Confidence 1110 0 00 01122333444444446678999999975321 111211 11123345
Q ss_pred cEEEEeecchhhh-hhc-CCCcceeecCCCChHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCc-hHHHHHHH
Q 047930 283 SKVLLTARSLDVL-SRK-MDSQQNFSFDVLKEDEAWSLFKKMAGDYIEGSEFKWVAREVAKECAGL-PVSIVTVA 354 (395)
Q Consensus 283 s~iivTtR~~~va-~~~-~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~Gl-Plai~~i~ 354 (395)
..||.||...... ... ......+.+...+.++-.++|...+........ ......|++.+.|. +-.|..+.
T Consensus 155 v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~-~~~l~~la~~t~g~sg~di~~l~ 228 (322)
T 3eie_A 155 VLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLT-KEDYRTLGAMTEGYSGSDIAVVV 228 (322)
T ss_dssp EEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCCC-HHHHHHHHHTTTTCCHHHHHHHH
T ss_pred eEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCCC-HHHHHHHHHHcCCCCHHHHHHHH
Confidence 6666677653221 000 022357788899999999999998864332211 23467889999884 54554443
No 33
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.69 E-value=1.5e-07 Score=87.46 Aligned_cols=185 Identities=13% Similarity=0.101 Sum_probs=106.7
Q ss_pred cccccchhchHHHHHHHHHHhcCCCceEEEEEecCCCcHHHHHHHHHHHhcccCCCC-EEEEEEeCCcCCHHHHHHHHHH
Q 047930 150 NKDYEAFESRMSTLNDILDALKNPDVNMLGIYGMGGIGKTTLAKEVARKAENEKLFD-QVIFVEVSQIQDIRKIQGEFAD 228 (395)
Q Consensus 150 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~-~~~wv~~s~~~~~~~~~~~i~~ 228 (395)
|.....++|.+..++.|..++..++.+.+.++|+.|+||||+|+.++...... .+. .+..++.+.......+. +++.
T Consensus 21 p~~~~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~-~~~~~~~~~~~~~~~~~~~ir-~~i~ 98 (340)
T 1sxj_C 21 PETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGK-NYSNMVLELNASDDRGIDVVR-NQIK 98 (340)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTT-SHHHHEEEECTTSCCSHHHHH-THHH
T ss_pred CCcHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCC-CccceEEEEcCcccccHHHHH-HHHH
Confidence 44456677888888888888887766568999999999999999999875422 111 12333333322222221 1111
Q ss_pred HhCCCccccchhhhHHHHHHHHhcCCeEEEEEeCCCCcc--ccchhccccCCCCCCcEEEEeecchh-hhhhcCCCccee
Q 047930 229 KLGLTLHEETESGRARSLCNRLKKEKRILVILDNIWENL--DFQAVGIPHGDGHKGSKVLLTARSLD-VLSRKMDSQQNF 305 (395)
Q Consensus 229 ~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iivTtR~~~-va~~~~~~~~~~ 305 (395)
.+..... ...+.+-++|+|++.... ..+.+...+......+++|++|.... +..........+
T Consensus 99 ~~~~~~~--------------~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~~~ 164 (340)
T 1sxj_C 99 DFASTRQ--------------IFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRF 164 (340)
T ss_dssp HHHHBCC--------------SSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEE
T ss_pred HHHhhcc--------------cCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhceeE
Confidence 1100000 001346789999996532 22333322222234566777665432 222222344588
Q ss_pred ecCCCChHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHHHH
Q 047930 306 SFDVLKEDEAWSLFKKMAGDYIEGSEFKWVAREVAKECAGLPVSIV 351 (395)
Q Consensus 306 ~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~ 351 (395)
.+.+++.++..+.+...+......- -....+.|++.++|.+--+.
T Consensus 165 ~~~~l~~~~~~~~l~~~~~~~~~~i-~~~~~~~i~~~s~G~~r~~~ 209 (340)
T 1sxj_C 165 RFQPLPQEAIERRIANVLVHEKLKL-SPNAEKALIELSNGDMRRVL 209 (340)
T ss_dssp ECCCCCHHHHHHHHHHHHHTTTCCB-CHHHHHHHHHHHTTCHHHHH
T ss_pred eccCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHH
Confidence 9999999999998887763211111 12356788888898887543
No 34
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.69 E-value=2.4e-07 Score=86.00 Aligned_cols=193 Identities=16% Similarity=0.156 Sum_probs=113.4
Q ss_pred ccccchhchHHHHHHHHHHhc-----CCCceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHH
Q 047930 151 KDYEAFESRMSTLNDILDALK-----NPDVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGE 225 (395)
Q Consensus 151 ~~~~~~~gr~~~~~~l~~~l~-----~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 225 (395)
.....++|++..++.+..++. ......+.|+|++|+|||+||+.+.+..... .+.++.+......
T Consensus 26 ~~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~-----~~~~~~~~~~~~~----- 95 (338)
T 3pfi_A 26 SNFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSAN-----IKTTAAPMIEKSG----- 95 (338)
T ss_dssp CSGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTTCC-----EEEEEGGGCCSHH-----
T ss_pred CCHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhCCC-----eEEecchhccchh-----
Confidence 345678999998888887775 2345678899999999999999998875421 2333333221111
Q ss_pred HHHHhCCCccccchhhhHHHHHHHHh-cCCeEEEEEeCCCCcc--ccchhccccC------------------CCCCCcE
Q 047930 226 FADKLGLTLHEETESGRARSLCNRLK-KEKRILVILDNIWENL--DFQAVGIPHG------------------DGHKGSK 284 (395)
Q Consensus 226 i~~~l~~~~~~~~~~~~~~~l~~~l~-~~kr~LlVlDdv~~~~--~~~~l~~~l~------------------~~~~gs~ 284 (395)
.+...+. ..+..+|+||++.... ....+...+. ...++..
T Consensus 96 -------------------~~~~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (338)
T 3pfi_A 96 -------------------DLAAILTNLSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFT 156 (338)
T ss_dssp -------------------HHHHHHHTCCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCE
T ss_pred -------------------HHHHHHHhccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeE
Confidence 1111111 1356789999997542 1111111110 0112355
Q ss_pred EEEeecchhhh-hhcCCC-cceeecCCCChHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHHHHHHHHHh-----
Q 047930 285 VLLTARSLDVL-SRKMDS-QQNFSFDVLKEDEAWSLFKKMAGDYIEGSEFKWVAREVAKECAGLPVSIVTVARAL----- 357 (395)
Q Consensus 285 iivTtR~~~va-~~~~~~-~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~i~~~l----- 357 (395)
+|.+|...... ...... ...+.+.+++.++...++.+.+..... .--.+..+.|++.+.|.|-.+..+...+
T Consensus 157 ~i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~-~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~ 235 (338)
T 3pfi_A 157 LIGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNK-TCEEKAALEIAKRSRSTPRIALRLLKRVRDFAD 235 (338)
T ss_dssp EEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTC-EECHHHHHHHHHTTTTCHHHHHHHHHHHHHHHH
T ss_pred EEEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 66666653221 111122 368999999999999999887743221 1123467888999999996555443332
Q ss_pred -hCC---CHHHHHHHHHHhc
Q 047930 358 -RNK---RLFEWKDALEQLR 373 (395)
Q Consensus 358 -~~~---~~~~w~~~l~~l~ 373 (395)
... +.+....++..+.
T Consensus 236 ~~~~~~i~~~~~~~~~~~~~ 255 (338)
T 3pfi_A 236 VNDEEIITEKRANEALNSLG 255 (338)
T ss_dssp HTTCSEECHHHHHHHHHHHT
T ss_pred hhcCCccCHHHHHHHHHHhC
Confidence 111 5666666666643
No 35
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.68 E-value=1.8e-06 Score=79.39 Aligned_cols=183 Identities=17% Similarity=0.170 Sum_probs=103.5
Q ss_pred cccchhchHHHHHHHHHHhc------------CCCceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCH
Q 047930 152 DYEAFESRMSTLNDILDALK------------NPDVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDI 219 (395)
Q Consensus 152 ~~~~~~gr~~~~~~l~~~l~------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~ 219 (395)
....+.|.+..++.|.+.+. ....+.+.++|++|+|||+||+.+++.... ...+.++.+.-.+
T Consensus 10 ~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~----~~~~~i~~~~l~~- 84 (322)
T 1xwi_A 10 KWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANN----STFFSISSSDLVS- 84 (322)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTS----CEEEEEECCSSCC-
T ss_pred CHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCC----CcEEEEEhHHHHh-
Confidence 34567777777766665542 123467889999999999999999987621 1223344432211
Q ss_pred HHHHHHHHHHhCCCccccchhhhHHHHHHHHhcCCeEEEEEeCCCCccc-------------cchhcccc---CCCCCCc
Q 047930 220 RKIQGEFADKLGLTLHEETESGRARSLCNRLKKEKRILVILDNIWENLD-------------FQAVGIPH---GDGHKGS 283 (395)
Q Consensus 220 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~-------------~~~l~~~l---~~~~~gs 283 (395)
.... ........+.+.....++.+|+||+++.... ...+...+ .....+.
T Consensus 85 -------------~~~g-~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v 150 (322)
T 1xwi_A 85 -------------KWLG-ESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGI 150 (322)
T ss_dssp -------------SSCC-SCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTE
T ss_pred -------------hhhh-HHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCE
Confidence 0001 1122334444444446789999999975410 01111111 1123455
Q ss_pred EEEEeecchhhh-hhc-CCCcceeecCCCChHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCc-hHHHHHHH
Q 047930 284 KVLLTARSLDVL-SRK-MDSQQNFSFDVLKEDEAWSLFKKMAGDYIEGSEFKWVAREVAKECAGL-PVSIVTVA 354 (395)
Q Consensus 284 ~iivTtR~~~va-~~~-~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~Gl-Plai~~i~ 354 (395)
.||.||...... ... ......+.+...+.++-.++|...+....... .......|++.+.|. +-.|..+.
T Consensus 151 ~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l-~~~~l~~la~~t~G~sgadl~~l~ 223 (322)
T 1xwi_A 151 LVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSL-TEADFRELGRKTDGYSGADISIIV 223 (322)
T ss_dssp EEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCC-CHHHHHHHHHTCTTCCHHHHHHHH
T ss_pred EEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCC-CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 566666543221 101 12335788899999999999998875432211 123567899999987 44455554
No 36
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.67 E-value=6e-07 Score=83.19 Aligned_cols=170 Identities=12% Similarity=0.060 Sum_probs=102.6
Q ss_pred HHHHHHHHHHhcCCC-ceEEEEEecCCCcHHHHHHHHHHHhcccC--------------------CCCEEEEEEeC---C
Q 047930 160 MSTLNDILDALKNPD-VNMLGIYGMGGIGKTTLAKEVARKAENEK--------------------LFDQVIFVEVS---Q 215 (395)
Q Consensus 160 ~~~~~~l~~~l~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~--------------------~f~~~~wv~~s---~ 215 (395)
.+..+.+...+..++ .+.+.++|+.|+|||++|+.+.+...... |++. .++... .
T Consensus 8 ~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~-~~~~~~~~~~ 86 (334)
T 1a5t_A 8 RPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDY-YTLAPEKGKN 86 (334)
T ss_dssp HHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTE-EEECCCTTCS
T ss_pred HHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCE-EEEeccccCC
Confidence 445566777776555 45688999999999999999998754321 1221 222221 1
Q ss_pred cCCHHHHHHHHHHHhCCCccccchhhhHHHHHHHHhcCCeEEEEEeCCCCcc--ccchhccccCCCCCCcEEEEeecch-
Q 047930 216 IQDIRKIQGEFADKLGLTLHEETESGRARSLCNRLKKEKRILVILDNIWENL--DFQAVGIPHGDGHKGSKVLLTARSL- 292 (395)
Q Consensus 216 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~iivTtR~~- 292 (395)
...... .+++.+.+.... ..+++-++|+|+++... ..+.+...+.....++.+|++|.+.
T Consensus 87 ~~~i~~-ir~l~~~~~~~~----------------~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~ 149 (334)
T 1a5t_A 87 TLGVDA-VREVTEKLNEHA----------------RLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPE 149 (334)
T ss_dssp SBCHHH-HHHHHHHTTSCC----------------TTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGG
T ss_pred CCCHHH-HHHHHHHHhhcc----------------ccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChH
Confidence 111111 122222221110 02467899999997643 3344444443334566777777654
Q ss_pred hhhhhcCCCcceeecCCCChHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHHHHHH
Q 047930 293 DVLSRKMDSQQNFSFDVLKEDEAWSLFKKMAGDYIEGSEFKWVAREVAKECAGLPVSIVTV 353 (395)
Q Consensus 293 ~va~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~i 353 (395)
.+..........+++.++++++..+.+.... ..+ .+....+++.++|.|..+..+
T Consensus 150 ~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~---~~~---~~~~~~l~~~s~G~~r~a~~~ 204 (334)
T 1a5t_A 150 RLLATLRSRCRLHYLAPPPEQYAVTWLSREV---TMS---QDALLAALRLSAGSPGAALAL 204 (334)
T ss_dssp GSCHHHHTTSEEEECCCCCHHHHHHHHHHHC---CCC---HHHHHHHHHHTTTCHHHHHHT
T ss_pred hCcHHHhhcceeeeCCCCCHHHHHHHHHHhc---CCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 3333334556789999999999999998876 111 234578999999999766443
No 37
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.64 E-value=3.8e-07 Score=85.62 Aligned_cols=214 Identities=11% Similarity=0.085 Sum_probs=113.0
Q ss_pred ccchhchHHHHHH---HHHHhcCCCc--eEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeC----CcCCHHHHH
Q 047930 153 YEAFESRMSTLND---ILDALKNPDV--NMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVS----QIQDIRKIQ 223 (395)
Q Consensus 153 ~~~~~gr~~~~~~---l~~~l~~~~~--~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s----~~~~~~~~~ 223 (395)
...|+|++..++. +...+..+.. +.+.|+|++|+|||++|+.+.+.......| +.++.. ......+.+
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~---~~~~~~~~~~~~~~~~~~~ 119 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPF---TAIAGSEIFSLEMSKTEAL 119 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCE---EEEEGGGGSCSSSCHHHHH
T ss_pred hhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCc---ccccchhhhhcccchhHHH
Confidence 5678998877655 4454544433 588999999999999999999987532222 223321 222333444
Q ss_pred HHHHHHh-CC--------------------C--------ccc--cchh---hhHHHHHHHH-hcCC----eEEEEEeCCC
Q 047930 224 GEFADKL-GL--------------------T--------LHE--ETES---GRARSLCNRL-KKEK----RILVILDNIW 264 (395)
Q Consensus 224 ~~i~~~l-~~--------------------~--------~~~--~~~~---~~~~~l~~~l-~~~k----r~LlVlDdv~ 264 (395)
.+..... +. . ... .... ..+....... ..++ +.+|+||++.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~ 199 (368)
T 3uk6_A 120 TQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVH 199 (368)
T ss_dssp HHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGG
T ss_pred HHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhcc
Confidence 4333321 00 0 000 0000 1111111111 1233 3599999997
Q ss_pred Ccc--ccchhccccCCCCCCcEEEEeecc-------------hhhhhhcCCCcceeecCCCChHHHHHHHHHhhCCCCCC
Q 047930 265 ENL--DFQAVGIPHGDGHKGSKVLLTARS-------------LDVLSRKMDSQQNFSFDVLKEDEAWSLFKKMAGDYIEG 329 (395)
Q Consensus 265 ~~~--~~~~l~~~l~~~~~gs~iivTtR~-------------~~va~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~ 329 (395)
... ....+...+...... .++++|.. ..+..........+.+.+++.++...++...+......
T Consensus 200 ~l~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~~~~~ 278 (368)
T 3uk6_A 200 MLDIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQILRIRCEEEDVE 278 (368)
T ss_dssp GSBHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEECCCCHHHHHHHHHHHHHHTTCC
T ss_pred ccChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHhhccEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 542 223333333222222 34444421 11111122344568999999999999999887432221
Q ss_pred CchHHHHHHHHHHcC-CchHHHHHHHHHh------hC--C-CHHHHHHHHHH
Q 047930 330 SEFKWVAREVAKECA-GLPVSIVTVARAL------RN--K-RLFEWKDALEQ 371 (395)
Q Consensus 330 ~~~~~~~~~i~~~c~-GlPlai~~i~~~l------~~--~-~~~~w~~~l~~ 371 (395)
--.+....|++.+. |.|-.+..+.... .. . +.+..+.+++.
T Consensus 279 -~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~~~It~~~v~~a~~~ 329 (368)
T 3uk6_A 279 -MSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSL 329 (368)
T ss_dssp -BCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 12346788999997 7777555443221 12 2 66777777665
No 38
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.62 E-value=2e-06 Score=81.36 Aligned_cols=185 Identities=15% Similarity=0.170 Sum_probs=104.7
Q ss_pred cccccchhchHHHHHHHHHHhc------------CCCceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcC
Q 047930 150 NKDYEAFESRMSTLNDILDALK------------NPDVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQ 217 (395)
Q Consensus 150 ~~~~~~~~gr~~~~~~l~~~l~------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~ 217 (395)
+.....++|.+..++.|...+. ....+.+.|+|++|+|||+||+.+++.... ..+.++++.-.
T Consensus 111 ~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~-----~~~~v~~~~l~ 185 (389)
T 3vfd_A 111 AVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNA-----TFFNISAASLT 185 (389)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTC-----EEEEECSCCC-
T ss_pred CCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcC-----cEEEeeHHHhh
Confidence 3445678999998888887762 123467889999999999999999887532 23344433221
Q ss_pred CHHHHHHHHHHHhCCCccccchhhhHHHHHHHHhcCCeEEEEEeCCCCcc--------c-----cchhcccc---CC-CC
Q 047930 218 DIRKIQGEFADKLGLTLHEETESGRARSLCNRLKKEKRILVILDNIWENL--------D-----FQAVGIPH---GD-GH 280 (395)
Q Consensus 218 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~--------~-----~~~l~~~l---~~-~~ 280 (395)
. .. .+ ........+........+.+|+||+++... . ...+...+ .. ..
T Consensus 186 ~--~~-------~g------~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 250 (389)
T 3vfd_A 186 S--KY-------VG------EGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGD 250 (389)
T ss_dssp ---------------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC----
T ss_pred c--cc-------cc------hHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCC
Confidence 1 00 00 011123334444433566899999996431 0 01111111 11 12
Q ss_pred CCcEEEEeecchh-hhhhcC-CCcceeecCCCChHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchH-HHHHHHH
Q 047930 281 KGSKVLLTARSLD-VLSRKM-DSQQNFSFDVLKEDEAWSLFKKMAGDYIEGSEFKWVAREVAKECAGLPV-SIVTVAR 355 (395)
Q Consensus 281 ~gs~iivTtR~~~-va~~~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPl-ai~~i~~ 355 (395)
....||.||.... +..... .....+.+...+.++...++...+......- .......|++.+.|..- +|..+..
T Consensus 251 ~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l-~~~~~~~la~~~~g~~~~~l~~L~~ 327 (389)
T 3vfd_A 251 DRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPL-TQKELAQLARMTDGYSGSDLTALAK 327 (389)
T ss_dssp -CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCCS-CHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 2445566665432 211111 2234688999999999999998875432221 23357789999998654 6655543
No 39
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.61 E-value=1e-07 Score=87.33 Aligned_cols=154 Identities=12% Similarity=0.096 Sum_probs=83.4
Q ss_pred chhchHHHHHHHHHHhc---------------CCCceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCH
Q 047930 155 AFESRMSTLNDILDALK---------------NPDVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDI 219 (395)
Q Consensus 155 ~~~gr~~~~~~l~~~l~---------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~ 219 (395)
.++|.+..++.+.+.+. ......+.|+|++|+|||++|+.+++...........-++.++..
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~--- 108 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD--- 108 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGG---
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHH---
Confidence 35676666665554432 234457899999999999999988887644322211112333211
Q ss_pred HHHHHHHHHHhCCCccccchhhhHHHHHHHHhcCCeEEEEEeCCCCc-----------cccchhccccCCCCCCcEEEEe
Q 047930 220 RKIQGEFADKLGLTLHEETESGRARSLCNRLKKEKRILVILDNIWEN-----------LDFQAVGIPHGDGHKGSKVLLT 288 (395)
Q Consensus 220 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~-----------~~~~~l~~~l~~~~~gs~iivT 288 (395)
.+....... .......+.+.. +..+|+||+++.. .....+...+.....+..+|.|
T Consensus 109 ---------~l~~~~~g~-~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~ 175 (309)
T 3syl_A 109 ---------DLVGQYIGH-TAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILA 175 (309)
T ss_dssp ---------GTCCSSTTC-HHHHHHHHHHHH---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEE
T ss_pred ---------Hhhhhcccc-cHHHHHHHHHhc---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEe
Confidence 010000000 111122222222 3459999999733 1223333333333446677888
Q ss_pred ecchhhh------hhcC-CCcceeecCCCChHHHHHHHHHhhC
Q 047930 289 ARSLDVL------SRKM-DSQQNFSFDVLKEDEAWSLFKKMAG 324 (395)
Q Consensus 289 tR~~~va------~~~~-~~~~~~~l~~L~~~e~~~lf~~~~~ 324 (395)
|...... .... .....+.+.+++.++...++...+.
T Consensus 176 ~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~ 218 (309)
T 3syl_A 176 GYADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLD 218 (309)
T ss_dssp ECHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHH
T ss_pred CChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHH
Confidence 7543210 0001 1226899999999999999988874
No 40
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.60 E-value=5.6e-07 Score=86.54 Aligned_cols=203 Identities=17% Similarity=0.187 Sum_probs=115.9
Q ss_pred ccchh-chHH--HHHHHHHHhcCCC-ceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHHH
Q 047930 153 YEAFE-SRMS--TLNDILDALKNPD-VNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFAD 228 (395)
Q Consensus 153 ~~~~~-gr~~--~~~~l~~~l~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 228 (395)
...|+ |... ....+......+. ...+.|+|++|+||||||+.+++.......-..+++++.+ .+..++..
T Consensus 104 fd~fv~g~~n~~a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~------~~~~~~~~ 177 (440)
T 2z4s_A 104 FENFVVGPGNSFAYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSE------KFLNDLVD 177 (440)
T ss_dssp GGGCCCCTTTHHHHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHH------HHHHHHHH
T ss_pred hhhcCCCCchHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHH------HHHHHHHH
Confidence 44565 5332 3334444443333 5678999999999999999999876433111224555443 33344444
Q ss_pred HhCCCccccchhhhHHHHHHHHhcCCeEEEEEeCCCCccc---c-chhccccCC-CCCCcEEEEeecchhh-----h---
Q 047930 229 KLGLTLHEETESGRARSLCNRLKKEKRILVILDNIWENLD---F-QAVGIPHGD-GHKGSKVLLTARSLDV-----L--- 295 (395)
Q Consensus 229 ~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~---~-~~l~~~l~~-~~~gs~iivTtR~~~v-----a--- 295 (395)
.+... ....+.+.+. .+.-+|+|||++.... . ..+...+.. ...|..||+||.+..- .
T Consensus 178 ~~~~~--------~~~~~~~~~~-~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L 248 (440)
T 2z4s_A 178 SMKEG--------KLNEFREKYR-KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRL 248 (440)
T ss_dssp HHHTT--------CHHHHHHHHT-TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHH
T ss_pred HHHcc--------cHHHHHHHhc-CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHH
Confidence 33211 1123333332 2567999999965431 1 223222210 1346778888876321 0
Q ss_pred hhcCCCcceeecCCCChHHHHHHHHHhhC--CCCCCCchHHHHHHHHHHcCCchHHHHHHHHHh------hCC--CHHHH
Q 047930 296 SRKMDSQQNFSFDVLKEDEAWSLFKKMAG--DYIEGSEFKWVAREVAKECAGLPVSIVTVARAL------RNK--RLFEW 365 (395)
Q Consensus 296 ~~~~~~~~~~~l~~L~~~e~~~lf~~~~~--~~~~~~~~~~~~~~i~~~c~GlPlai~~i~~~l------~~~--~~~~w 365 (395)
.........+.+.+++.++...++.+.+. +...+++ +...|++.++|.+-.+.-+...+ .++ +.+.+
T Consensus 249 ~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~e---~l~~la~~~~gn~R~l~~~L~~~~~~a~~~~~~It~~~~ 325 (440)
T 2z4s_A 249 VSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEE---VLNFVAENVDDNLRRLRGAIIKLLVYKETTGKEVDLKEA 325 (440)
T ss_dssp HHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCTT---HHHHHHHHCCSCHHHHHHHHHHHHHHHHHSSSCCCHHHH
T ss_pred HhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHH---HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 00112235789999999999999988873 2222332 46788999999987554432221 222 77788
Q ss_pred HHHHHHhc
Q 047930 366 KDALEQLR 373 (395)
Q Consensus 366 ~~~l~~l~ 373 (395)
+.+++.+.
T Consensus 326 ~~~l~~~~ 333 (440)
T 2z4s_A 326 ILLLKDFI 333 (440)
T ss_dssp HHHTSTTT
T ss_pred HHHHHHHh
Confidence 88877654
No 41
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.58 E-value=3.3e-06 Score=76.70 Aligned_cols=184 Identities=13% Similarity=0.125 Sum_probs=103.0
Q ss_pred ccccchhchHHHHHHHHHHhcC------------CCceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCC
Q 047930 151 KDYEAFESRMSTLNDILDALKN------------PDVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQD 218 (395)
Q Consensus 151 ~~~~~~~gr~~~~~~l~~~l~~------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~ 218 (395)
.....++|.+..++.+.+.+.. ...+.+.|+|++|+||||+|+.+++.... ..+.++.+.-..
T Consensus 18 ~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~-----~~~~i~~~~l~~ 92 (297)
T 3b9p_A 18 VEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSA-----TFLNISAASLTS 92 (297)
T ss_dssp CCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTC-----EEEEEESTTTSS
T ss_pred CCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCC-----CeEEeeHHHHhh
Confidence 4456788998888888776531 23467889999999999999999987532 233444433211
Q ss_pred HHHHHHHHHHHhCCCccccchhhhHHHHHHHHhcCCeEEEEEeCCCCccc-------------cchhc---cccCCC--C
Q 047930 219 IRKIQGEFADKLGLTLHEETESGRARSLCNRLKKEKRILVILDNIWENLD-------------FQAVG---IPHGDG--H 280 (395)
Q Consensus 219 ~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~-------------~~~l~---~~l~~~--~ 280 (395)
... .........+.......++.+|+||++..... ...+. ..++.. .
T Consensus 93 --------------~~~-~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 157 (297)
T 3b9p_A 93 --------------KYV-GDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDG 157 (297)
T ss_dssp --------------SSC-SCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC-----
T ss_pred --------------ccc-chHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCC
Confidence 000 01112223333333335678999999965311 00111 111111 1
Q ss_pred CCcEEEEeecchhhh-hhcC-CCcceeecCCCChHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchH-HHHHHHH
Q 047930 281 KGSKVLLTARSLDVL-SRKM-DSQQNFSFDVLKEDEAWSLFKKMAGDYIEGSEFKWVAREVAKECAGLPV-SIVTVAR 355 (395)
Q Consensus 281 ~gs~iivTtR~~~va-~~~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPl-ai~~i~~ 355 (395)
.+..||.||...... .... .....+.+...+.++...++...+......-. ......+++.+.|.+- .+..+..
T Consensus 158 ~~v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~-~~~~~~la~~~~g~~~~~l~~l~~ 234 (297)
T 3b9p_A 158 DRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPLD-TEALRRLAKITDGYSGSDLTALAK 234 (297)
T ss_dssp -CEEEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSCCSC-HHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CcEEEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHcCCCCHHHHHHHHH
Confidence 345566677653211 1000 12346778888888888888877643221111 2356789999999876 5555443
No 42
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.58 E-value=3.3e-06 Score=81.24 Aligned_cols=184 Identities=17% Similarity=0.196 Sum_probs=103.9
Q ss_pred ccccchhchHHHHHHHHHHhc------------CCCceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCC
Q 047930 151 KDYEAFESRMSTLNDILDALK------------NPDVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQD 218 (395)
Q Consensus 151 ~~~~~~~gr~~~~~~l~~~l~------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~ 218 (395)
.....+.|.+..++.|...+. ....+.+.|+|++|+|||+||+.+++.... .-++.++...
T Consensus 131 ~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~------~~~~~v~~~~- 203 (444)
T 2zan_A 131 VKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANN------STFFSISSSD- 203 (444)
T ss_dssp CCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCS------SEEEEECCC--
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCC------CCEEEEeHHH-
Confidence 345667888888887776652 123467889999999999999999987621 1223333221
Q ss_pred HHHHHHHHHHHhCCCccccchhhhHHHHHHHHhcCCeEEEEEeCCCCccc-------------cchhccccCC---CCCC
Q 047930 219 IRKIQGEFADKLGLTLHEETESGRARSLCNRLKKEKRILVILDNIWENLD-------------FQAVGIPHGD---GHKG 282 (395)
Q Consensus 219 ~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~-------------~~~l~~~l~~---~~~g 282 (395)
+.... .+. ....+..+.+.....++.+|+||+++.... ...+...+.. ...+
T Consensus 204 ---l~~~~---~g~------~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~ 271 (444)
T 2zan_A 204 ---LVSKW---LGE------SEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDG 271 (444)
T ss_dssp --------------------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSS
T ss_pred ---HHhhh---cch------HHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCC
Confidence 11110 110 111234444444445789999999975410 1112222211 2345
Q ss_pred cEEEEeecchhhh-hhcC-CCcceeecCCCChHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCc-hHHHHHHH
Q 047930 283 SKVLLTARSLDVL-SRKM-DSQQNFSFDVLKEDEAWSLFKKMAGDYIEGSEFKWVAREVAKECAGL-PVSIVTVA 354 (395)
Q Consensus 283 s~iivTtR~~~va-~~~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~Gl-Plai~~i~ 354 (395)
..||.||...... .... .....+.+...+.++...+|...+........ ......|++.+.|. +-.|..+.
T Consensus 272 v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~-~~~l~~la~~t~G~sgadl~~l~ 345 (444)
T 2zan_A 272 ILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLT-EADFQELGRKTDGYSGADISIIV 345 (444)
T ss_dssp CEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEECC-HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCCC-HHHHHHHHHHcCCCCHHHHHHHH
Confidence 6667677653221 1111 22357888888889999999888754322111 23467899999994 44554443
No 43
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.57 E-value=1.8e-06 Score=80.67 Aligned_cols=183 Identities=19% Similarity=0.170 Sum_probs=103.1
Q ss_pred ccccchhchHHHHHHHHHHhc------------CCCceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCC
Q 047930 151 KDYEAFESRMSTLNDILDALK------------NPDVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQD 218 (395)
Q Consensus 151 ~~~~~~~gr~~~~~~l~~~l~------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~ 218 (395)
.....++|.+..++.|.+.+. ....+-+.|+|++|+|||+||+.+++..... .+.++.+
T Consensus 48 ~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~-----~~~v~~~---- 118 (355)
T 2qp9_X 48 VKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANST-----FFSVSSS---- 118 (355)
T ss_dssp CCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCE-----EEEEEHH----
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCC-----EEEeeHH----
Confidence 334567888888887777652 1123458899999999999999999986421 2333322
Q ss_pred HHHHHHHHHHHhCCCccccchhhhHHHHHHHHhcCCeEEEEEeCCCCccc-------------cchhcccc---CCCCCC
Q 047930 219 IRKIQGEFADKLGLTLHEETESGRARSLCNRLKKEKRILVILDNIWENLD-------------FQAVGIPH---GDGHKG 282 (395)
Q Consensus 219 ~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~-------------~~~l~~~l---~~~~~g 282 (395)
++.. .. ... .......+.......++.+|+||+++.... ...+...+ .....+
T Consensus 119 --~l~~----~~----~g~-~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 187 (355)
T 2qp9_X 119 --DLVS----KW----MGE-SEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQG 187 (355)
T ss_dssp --HHHS----CC--------CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CC
T ss_pred --HHhh----hh----cch-HHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCC
Confidence 1111 00 000 112233444444445789999999975321 11121111 112345
Q ss_pred cEEEEeecchhhh-hhc-CCCcceeecCCCChHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCc-hHHHHHHH
Q 047930 283 SKVLLTARSLDVL-SRK-MDSQQNFSFDVLKEDEAWSLFKKMAGDYIEGSEFKWVAREVAKECAGL-PVSIVTVA 354 (395)
Q Consensus 283 s~iivTtR~~~va-~~~-~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~Gl-Plai~~i~ 354 (395)
..||.||...... ... ......+.+...+.++-.++|...+........ ......|++.+.|. |-.|..+.
T Consensus 188 v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~-~~~l~~la~~t~G~sg~dl~~l~ 261 (355)
T 2qp9_X 188 VLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVLT-KEDYRTLGAMTEGYSGSDIAVVV 261 (355)
T ss_dssp EEEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBCCC-HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred eEEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHcCCCCHHHHHHHH
Confidence 5566666543211 101 123357889999999999999988864322111 23467899999984 54454443
No 44
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.54 E-value=2.5e-06 Score=79.84 Aligned_cols=200 Identities=18% Similarity=0.228 Sum_probs=113.7
Q ss_pred ccccchhchHHHHHHHHHHhc-------------CCCceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcC
Q 047930 151 KDYEAFESRMSTLNDILDALK-------------NPDVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQ 217 (395)
Q Consensus 151 ~~~~~~~gr~~~~~~l~~~l~-------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~ 217 (395)
....++.|-++.+++|.+.+. -..++-+.++|++|+|||.||+.+++..... .+.++.+.-.
T Consensus 145 v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~-----f~~v~~s~l~ 219 (405)
T 4b4t_J 145 STYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCK-----FIRVSGAELV 219 (405)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCE-----EEEEEGGGGS
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCC-----ceEEEhHHhh
Confidence 345566677766666655432 1235668899999999999999999987542 3444443321
Q ss_pred CHHHHHHHHHHHhCCCccccchhhhHHHHHHHHhcCCeEEEEEeCCCCcc----------c------cchhccccC--CC
Q 047930 218 DIRKIQGEFADKLGLTLHEETESGRARSLCNRLKKEKRILVILDNIWENL----------D------FQAVGIPHG--DG 279 (395)
Q Consensus 218 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~----------~------~~~l~~~l~--~~ 279 (395)
+ .... .....+..+........+++|+||+++... . ...+...+. ..
T Consensus 220 s--------------k~vG-ese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~ 284 (405)
T 4b4t_J 220 Q--------------KYIG-EGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFET 284 (405)
T ss_dssp C--------------SSTT-HHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTC
T ss_pred c--------------cccc-hHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCC
Confidence 1 0101 111234444555445678999999997531 0 011111111 23
Q ss_pred CCCcEEEEeecchhhh----hhcCCCcceeecCCCChHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHH-HHHH-
Q 047930 280 HKGSKVLLTARSLDVL----SRKMDSQQNFSFDVLKEDEAWSLFKKMAGDYIEGSEFKWVAREVAKECAGLPVS-IVTV- 353 (395)
Q Consensus 280 ~~gs~iivTtR~~~va----~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPla-i~~i- 353 (395)
..+..||.||...... .+.......+.++..+.++-.++|+.++......++.. ...|++.|.|.--| |..+
T Consensus 285 ~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvd--l~~lA~~t~G~SGADi~~l~ 362 (405)
T 4b4t_J 285 SKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGIN--LRKVAEKMNGCSGADVKGVC 362 (405)
T ss_dssp CCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCC--HHHHHHHCCSCCHHHHHHHH
T ss_pred CCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCC--HHHHHHHCCCCCHHHHHHHH
Confidence 3455667777654332 11113456889998898999999988875433222221 45788888886432 2222
Q ss_pred --HHH--hh-CC---CHHHHHHHHHHh
Q 047930 354 --ARA--LR-NK---RLFEWKDALEQL 372 (395)
Q Consensus 354 --~~~--l~-~~---~~~~w~~~l~~l 372 (395)
|++ ++ ++ +.+++..+++..
T Consensus 363 ~eA~~~Air~~~~~vt~~Df~~Al~~v 389 (405)
T 4b4t_J 363 TEAGMYALRERRIHVTQEDFELAVGKV 389 (405)
T ss_dssp HHHHHHHHHTTCSBCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 222 23 22 567777777654
No 45
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=98.52 E-value=7.3e-07 Score=86.46 Aligned_cols=151 Identities=14% Similarity=0.202 Sum_probs=87.1
Q ss_pred cccchhchHHHHHHHHHHhcCCCceEEEEEecCCCcHHHHHHHHHHHhcccCC---C-CE-EEEEEeCCcCCHHHHHHHH
Q 047930 152 DYEAFESRMSTLNDILDALKNPDVNMLGIYGMGGIGKTTLAKEVARKAENEKL---F-DQ-VIFVEVSQIQDIRKIQGEF 226 (395)
Q Consensus 152 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~---f-~~-~~wv~~s~~~~~~~~~~~i 226 (395)
...+++||+.+++.++..+.......+.++|++|+|||++|+.+++....... . +. ++.++++.
T Consensus 178 ~ld~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~----------- 246 (468)
T 3pxg_A 178 SLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGT----------- 246 (468)
T ss_dssp CSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC---------------
T ss_pred CCCCccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCCc-----------
Confidence 35678999999999999987666667789999999999999999987532110 1 11 22222220
Q ss_pred HHHhCCCccccchhhhHHHHHHHHhcCCeEEEEEeCCCCccccchhccccCCCCCCcEEEEeecchh------hhhhcCC
Q 047930 227 ADKLGLTLHEETESGRARSLCNRLKKEKRILVILDNIWENLDFQAVGIPHGDGHKGSKVLLTARSLD------VLSRKMD 300 (395)
Q Consensus 227 ~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iivTtR~~~------va~~~~~ 300 (395)
.. ..........+.+.+...++.+|++| ...+....+...+. . ...++|.+|.... +......
T Consensus 247 --~~-----~g~~e~~~~~~~~~~~~~~~~iLfiD--~~~~a~~~L~~~L~-~-g~v~vI~at~~~e~~~~~~~~~al~~ 315 (468)
T 3pxg_A 247 --KY-----RGEFEDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSLA-R-GELQCIGATTLDEYRKYIEKDAALER 315 (468)
T ss_dssp -------------CTTHHHHHHHHHTCCCCEEEEC--C--------CCCTT-S-SSCEEEEECCTTTTHHHHTTCSHHHH
T ss_pred --cc-----cchHHHHHHHHHHHHHhcCCeEEEEe--CchhHHHHHHHhhc-C-CCEEEEecCCHHHHHHHhhcCHHHHH
Confidence 00 00011233455555554567899999 22222222333332 2 2345555554432 1111122
Q ss_pred CcceeecCCCChHHHHHHHHHhhC
Q 047930 301 SQQNFSFDVLKEDEAWSLFKKMAG 324 (395)
Q Consensus 301 ~~~~~~l~~L~~~e~~~lf~~~~~ 324 (395)
....+.+.+.+.++...++.....
T Consensus 316 Rf~~i~v~~p~~e~~~~iL~~~~~ 339 (468)
T 3pxg_A 316 RFQPIQVDQPSVDESIQILQGLRD 339 (468)
T ss_dssp SEEEEECCCCCHHHHHHHHHHTTT
T ss_pred hCccceeCCCCHHHHHHHHHHHHH
Confidence 345799999999999999997763
No 46
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.50 E-value=2.2e-06 Score=81.49 Aligned_cols=199 Identities=17% Similarity=0.228 Sum_probs=111.5
Q ss_pred ccchhchHHHHHHHHHHhc-------------CCCceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCH
Q 047930 153 YEAFESRMSTLNDILDALK-------------NPDVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDI 219 (395)
Q Consensus 153 ~~~~~gr~~~~~~l~~~l~-------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~ 219 (395)
..++.|-++.+++|.+.+. -..++-|.++|++|+|||+||+.+++..... .+.++.+.-.+
T Consensus 180 ~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~-----~~~v~~s~l~s- 253 (437)
T 4b4t_L 180 FDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGAN-----FIFSPASGIVD- 253 (437)
T ss_dssp SGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCE-----EEEEEGGGTCC-
T ss_pred hhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCC-----EEEEehhhhcc-
Confidence 4556677766666555432 1235678899999999999999999987532 34444433211
Q ss_pred HHHHHHHHHHhCCCccccchhhhHHHHHHHHhcCCeEEEEEeCCCCcc--------c--------cchhcccc--CCCCC
Q 047930 220 RKIQGEFADKLGLTLHEETESGRARSLCNRLKKEKRILVILDNIWENL--------D--------FQAVGIPH--GDGHK 281 (395)
Q Consensus 220 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~--------~--------~~~l~~~l--~~~~~ 281 (395)
.... .....+..+........+++|+||+++... . ...+...+ .....
T Consensus 254 -------------k~~G-ese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~ 319 (437)
T 4b4t_L 254 -------------KYIG-ESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLG 319 (437)
T ss_dssp -------------SSSS-HHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTT
T ss_pred -------------ccch-HHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCC
Confidence 0111 111233344444444679999999997431 0 11111111 12334
Q ss_pred CcEEEEeecchhhh-hhcCC---CcceeecCCCChHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHH-HHHH---
Q 047930 282 GSKVLLTARSLDVL-SRKMD---SQQNFSFDVLKEDEAWSLFKKMAGDYIEGSEFKWVAREVAKECAGLPVS-IVTV--- 353 (395)
Q Consensus 282 gs~iivTtR~~~va-~~~~~---~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPla-i~~i--- 353 (395)
+..||.||...... ..... -...|.++..+.++-.++|+.++......++.. ...+++.+.|+--| |..+
T Consensus 320 ~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~d--l~~lA~~t~G~sGADi~~l~~e 397 (437)
T 4b4t_L 320 QTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFD--FEAAVKMSDGFNGADIRNCATE 397 (437)
T ss_dssp SSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCC--HHHHHHTCCSCCHHHHHHHHHH
T ss_pred CeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccC--HHHHHHhCCCCCHHHHHHHHHH
Confidence 55677777654432 11111 245788888888888888887774322222211 35678888886432 2222
Q ss_pred HHHh--h-CC---CHHHHHHHHHHhc
Q 047930 354 ARAL--R-NK---RLFEWKDALEQLR 373 (395)
Q Consensus 354 ~~~l--~-~~---~~~~w~~~l~~l~ 373 (395)
|++. + ++ +.++...+++.+.
T Consensus 398 A~~~air~~~~~i~~~d~~~Al~~v~ 423 (437)
T 4b4t_L 398 AGFFAIRDDRDHINPDDLMKAVRKVA 423 (437)
T ss_dssp HHHHHHHTTCSSBCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 2222 2 22 5677777777654
No 47
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.44 E-value=5.4e-06 Score=78.70 Aligned_cols=198 Identities=16% Similarity=0.204 Sum_probs=110.8
Q ss_pred ccchhchHHHHHHHHHHhc-------------CCCceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCH
Q 047930 153 YEAFESRMSTLNDILDALK-------------NPDVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDI 219 (395)
Q Consensus 153 ~~~~~gr~~~~~~l~~~l~-------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~ 219 (395)
..++.|-++.+++|.+.+. -..++-|.++|++|+|||+||+.+++..... .+.++.+.-.+
T Consensus 208 ~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~-----fi~vs~s~L~s- 281 (467)
T 4b4t_H 208 YSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDAT-----FIRVIGSELVQ- 281 (467)
T ss_dssp CSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCE-----EEEEEGGGGCC-
T ss_pred HHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCC-----eEEEEhHHhhc-
Confidence 3456677766666655432 1346778899999999999999999987532 33444332111
Q ss_pred HHHHHHHHHHhCCCccccchhhhHHHHHHHHhcCCeEEEEEeCCCCccc----------------cchhcccc--CCCCC
Q 047930 220 RKIQGEFADKLGLTLHEETESGRARSLCNRLKKEKRILVILDNIWENLD----------------FQAVGIPH--GDGHK 281 (395)
Q Consensus 220 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~----------------~~~l~~~l--~~~~~ 281 (395)
..... ....+..+........+++|+||+++.... ...+...+ .....
T Consensus 282 -------------k~vGe-sek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~ 347 (467)
T 4b4t_H 282 -------------KYVGE-GARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRG 347 (467)
T ss_dssp -------------CSSSH-HHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTT
T ss_pred -------------ccCCH-HHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCC
Confidence 11111 112334444444446789999999974310 00111111 12233
Q ss_pred CcEEEEeecchhhh----hhcCCCcceeecCCCChHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHH-HHHH---
Q 047930 282 GSKVLLTARSLDVL----SRKMDSQQNFSFDVLKEDEAWSLFKKMAGDYIEGSEFKWVAREVAKECAGLPVS-IVTV--- 353 (395)
Q Consensus 282 gs~iivTtR~~~va----~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPla-i~~i--- 353 (395)
+..||.||...... .+.......+.+...+.++-.++|+.++.......+.. ...|++.|.|.--| |..+
T Consensus 348 ~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvd--l~~LA~~T~GfSGADI~~l~~e 425 (467)
T 4b4t_H 348 NIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIR--WELISRLCPNSTGAELRSVCTE 425 (467)
T ss_dssp TEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCC--HHHHHHHCCSCCHHHHHHHHHH
T ss_pred cEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCC--HHHHHHHCCCCCHHHHHHHHHH
Confidence 44566677543322 11112456889988888999999988875433322221 35688889886432 2222
Q ss_pred HHHh--h-CC---CHHHHHHHHHHh
Q 047930 354 ARAL--R-NK---RLFEWKDALEQL 372 (395)
Q Consensus 354 ~~~l--~-~~---~~~~w~~~l~~l 372 (395)
|++. + ++ +.++...+++++
T Consensus 426 Aa~~Air~~~~~it~~Df~~Al~kV 450 (467)
T 4b4t_H 426 AGMFAIRARRKVATEKDFLKAVDKV 450 (467)
T ss_dssp HHHHHHHHTCSSBCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCccCHHHHHHHHHHH
Confidence 2222 2 22 667777777654
No 48
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.44 E-value=1.6e-06 Score=82.40 Aligned_cols=203 Identities=14% Similarity=0.215 Sum_probs=110.8
Q ss_pred cccccchhchHHHHHHHHHHhc-------------CCCceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCc
Q 047930 150 NKDYEAFESRMSTLNDILDALK-------------NPDVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQI 216 (395)
Q Consensus 150 ~~~~~~~~gr~~~~~~l~~~l~-------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~ 216 (395)
.....++.|-++.+++|.+.+. -..++-|.++|++|+|||+||+.+++..... .+.++.+.-
T Consensus 177 ~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~-----f~~v~~s~l 251 (434)
T 4b4t_M 177 TETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNAT-----FLKLAAPQL 251 (434)
T ss_dssp SCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCE-----EEEEEGGGG
T ss_pred CCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCC-----EEEEehhhh
Confidence 3445667777777777665532 1345678899999999999999999987532 334443321
Q ss_pred CCHHHHHHHHHHHhCCCccccchhhhHHHHHHHHhcCCeEEEEEeCCCCcc-------c-----c----chhccccC--C
Q 047930 217 QDIRKIQGEFADKLGLTLHEETESGRARSLCNRLKKEKRILVILDNIWENL-------D-----F----QAVGIPHG--D 278 (395)
Q Consensus 217 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~-------~-----~----~~l~~~l~--~ 278 (395)
.+ .... .....+..+........+++|+||+++... . . ..+...+. .
T Consensus 252 ~~--------------~~vG-ese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~ 316 (434)
T 4b4t_M 252 VQ--------------MYIG-EGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFS 316 (434)
T ss_dssp CS--------------SCSS-HHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSC
T ss_pred hh--------------cccc-hHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccC
Confidence 11 1111 111233344444444568999999986320 0 0 11111111 1
Q ss_pred CCCCcEEEEeecchhhhh-hcC---CCcceeecCCCChHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHH-HHHH
Q 047930 279 GHKGSKVLLTARSLDVLS-RKM---DSQQNFSFDVLKEDEAWSLFKKMAGDYIEGSEFKWVAREVAKECAGLPVS-IVTV 353 (395)
Q Consensus 279 ~~~gs~iivTtR~~~va~-~~~---~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPla-i~~i 353 (395)
...+..||.||....... ... .....+.++..+.++-.++|+.++......++.. ...|++.|.|+--| |..+
T Consensus 317 ~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvd--l~~lA~~t~G~sGADi~~l 394 (434)
T 4b4t_M 317 SDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDIN--WQELARSTDEFNGAQLKAV 394 (434)
T ss_dssp SSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCC--HHHHHHHCSSCCHHHHHHH
T ss_pred CCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCC--HHHHHHhCCCCCHHHHHHH
Confidence 223455666776543321 111 2345788888888888888887664222222211 35688888886322 3333
Q ss_pred ---HHHh--h-CC---CHHHHHHHHHHhcC
Q 047930 354 ---ARAL--R-NK---RLFEWKDALEQLRR 374 (395)
Q Consensus 354 ---~~~l--~-~~---~~~~w~~~l~~l~~ 374 (395)
|++. + ++ +.++...+++....
T Consensus 395 ~~eA~~~a~r~~~~~i~~~Df~~Al~~v~~ 424 (434)
T 4b4t_M 395 TVEAGMIALRNGQSSVKHEDFVEGISEVQA 424 (434)
T ss_dssp HHHHHHHHHHHTCSSBCHHHHHHHHHSCSS
T ss_pred HHHHHHHHHHcCCCCcCHHHHHHHHHHHhC
Confidence 2222 2 22 55666666665443
No 49
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.43 E-value=4.9e-06 Score=78.22 Aligned_cols=200 Identities=16% Similarity=0.187 Sum_probs=110.7
Q ss_pred ccccchhchHHHHHHHHHHhc-------------CCCceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcC
Q 047930 151 KDYEAFESRMSTLNDILDALK-------------NPDVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQ 217 (395)
Q Consensus 151 ~~~~~~~gr~~~~~~l~~~l~-------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~ 217 (395)
....++-|-++.+++|.+.+. -..++-|.++|++|+|||.||+.+++..... .+.++.+.-.
T Consensus 179 v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~-----fi~v~~s~l~ 253 (437)
T 4b4t_I 179 ESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSAT-----FLRIVGSELI 253 (437)
T ss_dssp CCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCE-----EEEEESGGGC
T ss_pred CcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCC-----EEEEEHHHhh
Confidence 345556677666666555432 1235678899999999999999999987632 2334333211
Q ss_pred CHHHHHHHHHHHhCCCccccchhhhHHHHHHHHhcCCeEEEEEeCCCCccc----------------cchhcccc--CCC
Q 047930 218 DIRKIQGEFADKLGLTLHEETESGRARSLCNRLKKEKRILVILDNIWENLD----------------FQAVGIPH--GDG 279 (395)
Q Consensus 218 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~----------------~~~l~~~l--~~~ 279 (395)
+ .... .....+..+........+++|+||+++.... ...+...+ ...
T Consensus 254 s--------------k~vG-esek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~ 318 (437)
T 4b4t_I 254 Q--------------KYLG-DGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDD 318 (437)
T ss_dssp C--------------SSSS-HHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCC
T ss_pred h--------------ccCc-hHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCC
Confidence 1 1111 1112334444444446789999999874310 00111111 123
Q ss_pred CCCcEEEEeecchhhh-hhcC---CCcceeecCCCChHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHH-HHHH-
Q 047930 280 HKGSKVLLTARSLDVL-SRKM---DSQQNFSFDVLKEDEAWSLFKKMAGDYIEGSEFKWVAREVAKECAGLPVS-IVTV- 353 (395)
Q Consensus 280 ~~gs~iivTtR~~~va-~~~~---~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPla-i~~i- 353 (395)
..+..||.||...... .... .....+.+..-+.++-.++|+.++......++.. ...|++.+.|+--| |..+
T Consensus 319 ~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvd--l~~LA~~T~GfSGADI~~l~ 396 (437)
T 4b4t_I 319 RGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVN--LETLVTTKDDLSGADIQAMC 396 (437)
T ss_dssp SSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCC--HHHHHHHCCSCCHHHHHHHH
T ss_pred CCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCC--HHHHHHhCCCCCHHHHHHHH
Confidence 3455667777654432 1112 2234688888888888899988875433222211 35678888886432 2222
Q ss_pred --HHH--hh-CC---CHHHHHHHHHHh
Q 047930 354 --ARA--LR-NK---RLFEWKDALEQL 372 (395)
Q Consensus 354 --~~~--l~-~~---~~~~w~~~l~~l 372 (395)
|++ ++ ++ +.++...+++++
T Consensus 397 ~eA~~~Air~~~~~It~eDf~~Al~rv 423 (437)
T 4b4t_I 397 TEAGLLALRERRMQVTAEDFKQAKERV 423 (437)
T ss_dssp HHHHHHHHHTTCSCBCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCccCHHHHHHHHHHH
Confidence 222 22 22 567777777654
No 50
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.42 E-value=1.4e-06 Score=80.24 Aligned_cols=166 Identities=16% Similarity=0.150 Sum_probs=92.7
Q ss_pred HHHHHHHhcCC--CceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCccccchh
Q 047930 163 LNDILDALKNP--DVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFADKLGLTLHEETES 240 (395)
Q Consensus 163 ~~~l~~~l~~~--~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~ 240 (395)
...+...+..+ ....+.|+|++|+||||||+.+++..... .+ .+++++. .++...+...+..
T Consensus 23 ~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~-~~-~~~~i~~------~~~~~~~~~~~~~-------- 86 (324)
T 1l8q_A 23 YEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKR-GY-RVIYSSA------DDFAQAMVEHLKK-------- 86 (324)
T ss_dssp HHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHT-TC-CEEEEEH------HHHHHHHHHHHHH--------
T ss_pred HHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHC-CC-EEEEEEH------HHHHHHHHHHHHc--------
Confidence 33444444433 34678899999999999999999876432 12 2455543 2333333333211
Q ss_pred hhHHHHHHHHhcCCeEEEEEeCCCCcc---cc-chhccccCC-CCCCcEEEEeecchhh-----hh---hcCCCcceeec
Q 047930 241 GRARSLCNRLKKEKRILVILDNIWENL---DF-QAVGIPHGD-GHKGSKVLLTARSLDV-----LS---RKMDSQQNFSF 307 (395)
Q Consensus 241 ~~~~~l~~~l~~~kr~LlVlDdv~~~~---~~-~~l~~~l~~-~~~gs~iivTtR~~~v-----a~---~~~~~~~~~~l 307 (395)
.....+...+. +..+|+|||+.... .+ ..+...+.. ...+..||+||.+..- .. ........+++
T Consensus 87 ~~~~~~~~~~~--~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l 164 (324)
T 1l8q_A 87 GTINEFRNMYK--SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEI 164 (324)
T ss_dssp TCHHHHHHHHH--TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEEC
T ss_pred CcHHHHHHHhc--CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceEEEe
Confidence 01122333333 36799999996543 12 222222210 1235578888764321 10 01122357899
Q ss_pred CCCChHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHH
Q 047930 308 DVLKEDEAWSLFKKMAGDYIEGSEFKWVAREVAKECAGLPVS 349 (395)
Q Consensus 308 ~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPla 349 (395)
.+ +.++...++...+......- -.+..+.|++.+ |.+-.
T Consensus 165 ~~-~~~e~~~il~~~~~~~~~~l-~~~~l~~l~~~~-g~~r~ 203 (324)
T 1l8q_A 165 EL-DNKTRFKIIKEKLKEFNLEL-RKEVIDYLLENT-KNVRE 203 (324)
T ss_dssp CC-CHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-SSHHH
T ss_pred CC-CHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHhC-CCHHH
Confidence 99 99999999998874211111 134577888888 77653
No 51
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.41 E-value=1.2e-05 Score=73.21 Aligned_cols=176 Identities=13% Similarity=0.172 Sum_probs=99.1
Q ss_pred cccchhchHHHHHHHHHHhc-------------CCCceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCC
Q 047930 152 DYEAFESRMSTLNDILDALK-------------NPDVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQD 218 (395)
Q Consensus 152 ~~~~~~gr~~~~~~l~~~l~-------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~ 218 (395)
....+.|.+..++.|.+++. -...+.+.|+|++|+|||+||+.+++.... ..+.+ +
T Consensus 13 ~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~-----~~i~v--~---- 81 (301)
T 3cf0_A 13 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQA-----NFISI--K---- 81 (301)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTC-----EEEEE--C----
T ss_pred CHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCC-----CEEEE--E----
Confidence 34557787777666665543 134567889999999999999999987642 12222 2
Q ss_pred HHHHHHHHHHHhCCCccccchhhhHHHHHHHHhcCCeEEEEEeCCCCcc------------c----cchhccccC--CCC
Q 047930 219 IRKIQGEFADKLGLTLHEETESGRARSLCNRLKKEKRILVILDNIWENL------------D----FQAVGIPHG--DGH 280 (395)
Q Consensus 219 ~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~------------~----~~~l~~~l~--~~~ 280 (395)
..++..... +.. ......+.+......+.+|+||+++... . ...+...+. ...
T Consensus 82 ~~~l~~~~~---g~~------~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~ 152 (301)
T 3cf0_A 82 GPELLTMWF---GES------EANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTK 152 (301)
T ss_dssp HHHHHHHHH---TTC------TTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTT
T ss_pred hHHHHhhhc---Cch------HHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCC
Confidence 223332221 111 1123344444443568999999997421 0 111211111 122
Q ss_pred CCcEEEEeecchhhh-hhcC---CCcceeecCCCChHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHH
Q 047930 281 KGSKVLLTARSLDVL-SRKM---DSQQNFSFDVLKEDEAWSLFKKMAGDYIEGSEFKWVAREVAKECAGLPVS 349 (395)
Q Consensus 281 ~gs~iivTtR~~~va-~~~~---~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPla 349 (395)
.+..||.||...... .... .....+.+...+.++-.++|...+.......+.. ...++..+.|.|-+
T Consensus 153 ~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~--~~~la~~~~g~sg~ 223 (301)
T 3cf0_A 153 KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVD--LEFLAKMTNGFSGA 223 (301)
T ss_dssp SSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCC--HHHHHHTCSSCCHH
T ss_pred CCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccch--HHHHHHHcCCCCHH
Confidence 356677777654321 1111 2235789999999999999988875332221111 24566677777654
No 52
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.41 E-value=5.7e-07 Score=75.36 Aligned_cols=49 Identities=20% Similarity=0.266 Sum_probs=42.6
Q ss_pred cccchhchHHHHHHHHHHhcCCCceEEEEEecCCCcHHHHHHHHHHHhc
Q 047930 152 DYEAFESRMSTLNDILDALKNPDVNMLGIYGMGGIGKTTLAKEVARKAE 200 (395)
Q Consensus 152 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (395)
....++||+.+++.+.+.+.....+.+.|+|++|+|||+||+.+++...
T Consensus 20 ~~~~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 20 KLDPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp CSCCCCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred ccchhhcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 3456889999999999999877677889999999999999999998753
No 53
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.39 E-value=1.5e-06 Score=90.60 Aligned_cols=158 Identities=10% Similarity=0.161 Sum_probs=88.2
Q ss_pred ccccchhchHHHHHHHHHHhcCCCceEEEEEecCCCcHHHHHHHHHHHhcccC---CC-C-EEEEEEeCCcCCHHHHHHH
Q 047930 151 KDYEAFESRMSTLNDILDALKNPDVNMLGIYGMGGIGKTTLAKEVARKAENEK---LF-D-QVIFVEVSQIQDIRKIQGE 225 (395)
Q Consensus 151 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~---~f-~-~~~wv~~s~~~~~~~~~~~ 225 (395)
....+++||+.++..++..+.......+.++|++|+|||+||+.+++...... .. . .+++++++.-..
T Consensus 167 ~~ld~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~------- 239 (854)
T 1qvr_A 167 GKLDPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA------- 239 (854)
T ss_dssp TCSCCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC------------
T ss_pred CCCcccCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhc-------
Confidence 34567899999999999998866666788999999999999999998753211 11 1 234443322110
Q ss_pred HHHHhCCCccccchhhhHHHHHHHHhc-CCeEEEEEeCCCCcc-------ccc---hhccccCCCCCCcEEEEeecchhh
Q 047930 226 FADKLGLTLHEETESGRARSLCNRLKK-EKRILVILDNIWENL-------DFQ---AVGIPHGDGHKGSKVLLTARSLDV 294 (395)
Q Consensus 226 i~~~l~~~~~~~~~~~~~~~l~~~l~~-~kr~LlVlDdv~~~~-------~~~---~l~~~l~~~~~gs~iivTtR~~~v 294 (395)
+.. ........+..+.+.+.. +++.+|+||++.... .++ .+...+ .. .+..+|.+|.....
T Consensus 240 -----g~~-~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l-~~-~~i~~I~at~~~~~ 311 (854)
T 1qvr_A 240 -----GAK-YRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPAL-AR-GELRLIGATTLDEY 311 (854)
T ss_dssp ------------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHH-HT-TCCCEEEEECHHHH
T ss_pred -----cCc-cchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHH-hC-CCeEEEEecCchHH
Confidence 000 001112233444455543 467999999996542 011 121111 11 23345555543221
Q ss_pred -----hhhcCCCcceeecCCCChHHHHHHHHHhh
Q 047930 295 -----LSRKMDSQQNFSFDVLKEDEAWSLFKKMA 323 (395)
Q Consensus 295 -----a~~~~~~~~~~~l~~L~~~e~~~lf~~~~ 323 (395)
..........+.+.+++.++..+++....
T Consensus 312 ~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~~ 345 (854)
T 1qvr_A 312 REIEKDPALERRFQPVYVDEPTVEETISILRGLK 345 (854)
T ss_dssp HHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHHH
T ss_pred hhhccCHHHHhCCceEEeCCCCHHHHHHHHHhhh
Confidence 11122334468999999999999997554
No 54
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=98.35 E-value=2.1e-05 Score=69.78 Aligned_cols=200 Identities=16% Similarity=0.205 Sum_probs=105.1
Q ss_pred ccccchhchHHHHHHHHH---HhcC---------CCceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCC
Q 047930 151 KDYEAFESRMSTLNDILD---ALKN---------PDVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQD 218 (395)
Q Consensus 151 ~~~~~~~gr~~~~~~l~~---~l~~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~ 218 (395)
.....++|.+..++.+.+ ++.. ...+-+.|+|++|+||||||+.+++.... . .+.++.+.-..
T Consensus 9 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~--~---~~~i~~~~~~~ 83 (257)
T 1lv7_A 9 TTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKV--P---FFTISGSDFVE 83 (257)
T ss_dssp CCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTC--C---EEEECSCSSTT
T ss_pred CCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCC--C---EEEEeHHHHHH
Confidence 344567777666555443 3322 12345889999999999999999987642 1 23333222110
Q ss_pred HHHHHHHHHHHhCCCccccchhhhHHHHHHHHhcCCeEEEEEeCCCCccc----------------cchhccccC--CCC
Q 047930 219 IRKIQGEFADKLGLTLHEETESGRARSLCNRLKKEKRILVILDNIWENLD----------------FQAVGIPHG--DGH 280 (395)
Q Consensus 219 ~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~----------------~~~l~~~l~--~~~ 280 (395)
..... .......+.+......+.++++|+++.... ...+...+. ...
T Consensus 84 --------------~~~~~-~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 148 (257)
T 1lv7_A 84 --------------MFVGV-GASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGN 148 (257)
T ss_dssp --------------SCCCC-CHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSS
T ss_pred --------------Hhhhh-hHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccC
Confidence 00001 112233444444445678999999843210 011111110 123
Q ss_pred CCcEEEEeecchhhh-hhcC---CCcceeecCCCChHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCC-chHHHHHHHH
Q 047930 281 KGSKVLLTARSLDVL-SRKM---DSQQNFSFDVLKEDEAWSLFKKMAGDYIEGSEFKWVAREVAKECAG-LPVSIVTVAR 355 (395)
Q Consensus 281 ~gs~iivTtR~~~va-~~~~---~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~G-lPlai~~i~~ 355 (395)
.+..||.||...... .... .....+.+...+.++-.+++...+......++. ....++..+.| .+--|..+..
T Consensus 149 ~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~--~~~~la~~~~G~~~~dl~~l~~ 226 (257)
T 1lv7_A 149 EGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDI--DAAIIARGTPGFSGADLANLVN 226 (257)
T ss_dssp SCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTC--CHHHHHHTCTTCCHHHHHHHHH
T ss_pred CCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCccc--cHHHHHHHcCCCCHHHHHHHHH
Confidence 345667777654321 1111 123477888888888888888776432222221 13457778888 6655554321
Q ss_pred H---h---hC--C-CHHHHHHHHHHh
Q 047930 356 A---L---RN--K-RLFEWKDALEQL 372 (395)
Q Consensus 356 ~---l---~~--~-~~~~w~~~l~~l 372 (395)
. . ++ . +.+.++.+++..
T Consensus 227 ~a~~~a~~~~~~~i~~~~~~~a~~~~ 252 (257)
T 1lv7_A 227 EAALFAARGNKRVVSMVEFEKAKDKI 252 (257)
T ss_dssp HHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcccHHHHHHHHHHH
Confidence 1 1 12 1 667777777664
No 55
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.27 E-value=1.1e-05 Score=76.39 Aligned_cols=199 Identities=18% Similarity=0.207 Sum_probs=104.7
Q ss_pred ccccchhchHHHHHHHHHHhc-------------CCCceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcC
Q 047930 151 KDYEAFESRMSTLNDILDALK-------------NPDVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQ 217 (395)
Q Consensus 151 ~~~~~~~gr~~~~~~l~~~l~-------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~ 217 (395)
....++.|-+..++.|.+.+. -..++-+.++|++|+|||+||+.+++..... .+.++.+.-.
T Consensus 169 v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~-----~~~v~~~~l~ 243 (428)
T 4b4t_K 169 VTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAA-----FIRVNGSEFV 243 (428)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCE-----EEEEEGGGTC
T ss_pred CCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC-----eEEEecchhh
Confidence 345566777777666655442 1345668899999999999999999987532 3444443321
Q ss_pred CHHHHHHHHHHHhCCCccccchhhhHHHHHHHHhcCCeEEEEEeCCCCcc--------c--------cchhcccc--CCC
Q 047930 218 DIRKIQGEFADKLGLTLHEETESGRARSLCNRLKKEKRILVILDNIWENL--------D--------FQAVGIPH--GDG 279 (395)
Q Consensus 218 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~--------~--------~~~l~~~l--~~~ 279 (395)
+ .... .....+..+........+++|++|+++... . ...+...+ ...
T Consensus 244 ~--------------~~~G-e~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~ 308 (428)
T 4b4t_K 244 H--------------KYLG-EGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQ 308 (428)
T ss_dssp C--------------SSCS-HHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCS
T ss_pred c--------------cccc-hhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCC
Confidence 1 0000 111233444444444678999999986320 0 11111111 123
Q ss_pred CCCcEEEEeecchhhh-hhcC---CCcceeecCCCChH-HHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHH-HHHH
Q 047930 280 HKGSKVLLTARSLDVL-SRKM---DSQQNFSFDVLKED-EAWSLFKKMAGDYIEGSEFKWVAREVAKECAGLPVS-IVTV 353 (395)
Q Consensus 280 ~~gs~iivTtR~~~va-~~~~---~~~~~~~l~~L~~~-e~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPla-i~~i 353 (395)
..+..||.||...... .... .....+++.++++. +-..+|+.++......++.. ...+++.|.|+--| |..+
T Consensus 309 ~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~d--l~~lA~~t~G~sgadi~~l 386 (428)
T 4b4t_K 309 STNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEAD--LDSLIIRNDSLSGAVIAAI 386 (428)
T ss_dssp SCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCC--HHHHHHHTTTCCHHHHHHH
T ss_pred CCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccC--HHHHHHHCCCCCHHHHHHH
Confidence 3455677777654321 1111 22346788766554 44566666553322222211 35678888886422 2222
Q ss_pred ---HHH--hh-CC---CHHHHHHHHHH
Q 047930 354 ---ARA--LR-NK---RLFEWKDALEQ 371 (395)
Q Consensus 354 ---~~~--l~-~~---~~~~w~~~l~~ 371 (395)
|++ ++ ++ +.+....++..
T Consensus 387 ~~eA~~~a~r~~~~~i~~~d~~~A~~~ 413 (428)
T 4b4t_K 387 MQEAGLRAVRKNRYVILQSDLEEAYAT 413 (428)
T ss_dssp HHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHH
Confidence 222 22 22 56667666654
No 56
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=98.26 E-value=3.6e-06 Score=86.68 Aligned_cols=151 Identities=14% Similarity=0.188 Sum_probs=87.2
Q ss_pred cccchhchHHHHHHHHHHhcCCCceEEEEEecCCCcHHHHHHHHHHHhcccC-C---CCE-EEEEEeCCcCCHHHHHHHH
Q 047930 152 DYEAFESRMSTLNDILDALKNPDVNMLGIYGMGGIGKTTLAKEVARKAENEK-L---FDQ-VIFVEVSQIQDIRKIQGEF 226 (395)
Q Consensus 152 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~-~---f~~-~~wv~~s~~~~~~~~~~~i 226 (395)
...+++||+.+++.++..+.......+.++|++|+|||++|+.+++...... . .++ .+.++.
T Consensus 178 ~ld~iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~------------- 244 (758)
T 3pxi_A 178 SLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM------------- 244 (758)
T ss_dssp CSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC---------------
T ss_pred CCCCccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc-------------
Confidence 3567899999999999999766666788999999999999999998752211 0 111 111211
Q ss_pred HHHhCCCccccchhhhHHHHHHHHhcCCeEEEEEeCCCCccccchhccccCCCCCCcEEEEeecchh------hhhhcCC
Q 047930 227 ADKLGLTLHEETESGRARSLCNRLKKEKRILVILDNIWENLDFQAVGIPHGDGHKGSKVLLTARSLD------VLSRKMD 300 (395)
Q Consensus 227 ~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iivTtR~~~------va~~~~~ 300 (395)
+.... ......+..+.+.+...++.+|++| ...+....+...+ . ....++|.||.... +......
T Consensus 245 ----g~~~~-G~~e~~l~~~~~~~~~~~~~iLfiD--~~~~~~~~L~~~l-~-~~~v~~I~at~~~~~~~~~~~d~al~r 315 (758)
T 3pxi_A 245 ----GTKYR-GEFEDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSL-A-RGELQCIGATTLDEYRKYIEKDAALER 315 (758)
T ss_dssp -------------CTTHHHHHHHHHTCCCCEEEEC--C--------CCCT-T-SSSCEEEEECCTTTTHHHHTTCSHHHH
T ss_pred ----ccccc-chHHHHHHHHHHHHHhcCCEEEEEc--CchhHHHHHHHHH-h-cCCEEEEeCCChHHHHHHhhccHHHHh
Confidence 00000 0111234455555555678899999 2222222232232 2 22445666555433 1111112
Q ss_pred CcceeecCCCChHHHHHHHHHhhC
Q 047930 301 SQQNFSFDVLKEDEAWSLFKKMAG 324 (395)
Q Consensus 301 ~~~~~~l~~L~~~e~~~lf~~~~~ 324 (395)
....+.+.+.+.++..+++.....
T Consensus 316 Rf~~i~v~~p~~~~~~~il~~~~~ 339 (758)
T 3pxi_A 316 RFQPIQVDQPSVDESIQILQGLRD 339 (758)
T ss_dssp SEEEEECCCCCHHHHHHHHHHTTT
T ss_pred hCcEEEeCCCCHHHHHHHHHHHHH
Confidence 335799999999999999997653
No 57
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=98.25 E-value=1.3e-05 Score=82.67 Aligned_cols=158 Identities=15% Similarity=0.198 Sum_probs=93.0
Q ss_pred cccchhchHHHHHHHHHHhcCCCceEEEEEecCCCcHHHHHHHHHHHhcccCC----CCEEEE-EEeCCcCCHHHHHHHH
Q 047930 152 DYEAFESRMSTLNDILDALKNPDVNMLGIYGMGGIGKTTLAKEVARKAENEKL----FDQVIF-VEVSQIQDIRKIQGEF 226 (395)
Q Consensus 152 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~----f~~~~w-v~~s~~~~~~~~~~~i 226 (395)
...+++||+.++..+++.|.......+.|+|++|+|||++|+.+++....... ..+.+| +..+.-
T Consensus 184 ~~d~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l---------- 253 (758)
T 1r6b_X 184 GIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSL---------- 253 (758)
T ss_dssp CSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC------------
T ss_pred CCCCccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHH----------
Confidence 34578999999999999998766677889999999999999999987532111 233332 111110
Q ss_pred HHHhCCCccccchhhhHHHHHHHHhcCCeEEEEEeCCCCcc--------c--cchhccccCCCCCCcEEEEeecchhhh-
Q 047930 227 ADKLGLTLHEETESGRARSLCNRLKKEKRILVILDNIWENL--------D--FQAVGIPHGDGHKGSKVLLTARSLDVL- 295 (395)
Q Consensus 227 ~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~--------~--~~~l~~~l~~~~~gs~iivTtR~~~va- 295 (395)
+............+..+.+.+...++.+|+|||+.... . ...+..++... .+..+|.+|......
T Consensus 254 ---~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~-~~~~~I~at~~~~~~~ 329 (758)
T 1r6b_X 254 ---LAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS-GKIRVIGSTTYQEFSN 329 (758)
T ss_dssp ----CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSS-CCCEEEEEECHHHHHC
T ss_pred ---hccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHhC-CCeEEEEEeCchHHhh
Confidence 00000111122234455555554567999999997541 1 11222232222 345566666543211
Q ss_pred -----hhcCCCcceeecCCCChHHHHHHHHHhh
Q 047930 296 -----SRKMDSQQNFSFDVLKEDEAWSLFKKMA 323 (395)
Q Consensus 296 -----~~~~~~~~~~~l~~L~~~e~~~lf~~~~ 323 (395)
.........+.+.+.+.++..+++....
T Consensus 330 ~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 330 IFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp CCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred hhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 0011223468999999999999987654
No 58
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=98.23 E-value=5.6e-06 Score=75.41 Aligned_cols=144 Identities=15% Similarity=0.051 Sum_probs=89.7
Q ss_pred HHHHHHHHHHhcCCCceEEEEEecCCCcHHHHHHHHHHHhccc--CCCCEEEEEEeCC-cCCHHHHHHHHHHHhCCCccc
Q 047930 160 MSTLNDILDALKNPDVNMLGIYGMGGIGKTTLAKEVARKAENE--KLFDQVIFVEVSQ-IQDIRKIQGEFADKLGLTLHE 236 (395)
Q Consensus 160 ~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~--~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~~ 236 (395)
++.++.|...+..++.+...++|+.|+||||+|..+.+..... .+.+. .+++.++ ...+.+ .+++.+.+.....
T Consensus 3 ~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~-~~l~~~~~~~~id~-ir~li~~~~~~p~- 79 (305)
T 2gno_A 3 KDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASDV-LEIDPEGENIGIDD-IRTIKDFLNYSPE- 79 (305)
T ss_dssp -CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTE-EEECCSSSCBCHHH-HHHHHHHHTSCCS-
T ss_pred HHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCE-EEEcCCcCCCCHHH-HHHHHHHHhhccc-
Confidence 3455666677766667889999999999999999998753211 23343 4454433 233333 2334444432111
Q ss_pred cchhhhHHHHHHHHhcCCeEEEEEeCCCCc--cccchhccccCCCCCCcEEEEeecch-hhhhhcCCCcceeecCCCChH
Q 047930 237 ETESGRARSLCNRLKKEKRILVILDNIWEN--LDFQAVGIPHGDGHKGSKVLLTARSL-DVLSRKMDSQQNFSFDVLKED 313 (395)
Q Consensus 237 ~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR~~-~va~~~~~~~~~~~l~~L~~~ 313 (395)
.+++-++|+|+++.. ...+.+...+....+.+.+|++|.+. .+....... .+++.+++++
T Consensus 80 ---------------~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR--~~~f~~l~~~ 142 (305)
T 2gno_A 80 ---------------LYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR--VFRVVVNVPK 142 (305)
T ss_dssp ---------------SSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT--SEEEECCCCH
T ss_pred ---------------cCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce--eEeCCCCCHH
Confidence 145778999999754 24444544443344567777776543 333322333 8999999999
Q ss_pred HHHHHHHHhh
Q 047930 314 EAWSLFKKMA 323 (395)
Q Consensus 314 e~~~lf~~~~ 323 (395)
+....+.+..
T Consensus 143 ~i~~~L~~~~ 152 (305)
T 2gno_A 143 EFRDLVKEKI 152 (305)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998876
No 59
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=98.21 E-value=5.8e-07 Score=80.44 Aligned_cols=174 Identities=20% Similarity=0.173 Sum_probs=87.9
Q ss_pred ccchhchHHHHHHHHHHhc---C---------CCceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHH
Q 047930 153 YEAFESRMSTLNDILDALK---N---------PDVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIR 220 (395)
Q Consensus 153 ~~~~~gr~~~~~~l~~~l~---~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~ 220 (395)
...++|.+..++.+.+.+. . ...+-+.|+|++|+|||+||+.+++..... |- .++.+.-.+
T Consensus 10 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~--~~---~v~~~~~~~-- 82 (268)
T 2r62_A 10 FKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVP--FF---SMGGSSFIE-- 82 (268)
T ss_dssp STTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCC--CC---CCCSCTTTT--
T ss_pred HHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCC--EE---EechHHHHH--
Confidence 3456676555544444322 1 123347799999999999999999876432 21 111111100
Q ss_pred HHHHHHHHHhCCCccccchhhhHHHHHHHHhcCCeEEEEEeCCCCcc-----------------ccchhccccCC---CC
Q 047930 221 KIQGEFADKLGLTLHEETESGRARSLCNRLKKEKRILVILDNIWENL-----------------DFQAVGIPHGD---GH 280 (395)
Q Consensus 221 ~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~-----------------~~~~l~~~l~~---~~ 280 (395)
.+. ..... ....+.+.....++.+|+|||++... ....+...+.. ..
T Consensus 83 --------~~~-~~~~~----~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 149 (268)
T 2r62_A 83 --------MFV-GLGAS----RVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSEN 149 (268)
T ss_dssp --------SCS-SSCSS----SSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSC
T ss_pred --------hhc-chHHH----HHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCC
Confidence 000 00000 01112222222456899999995431 11222222211 11
Q ss_pred CCcEEEEeecchhhh-hhcC---CCcceeecCCCChHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchH
Q 047930 281 KGSKVLLTARSLDVL-SRKM---DSQQNFSFDVLKEDEAWSLFKKMAGDYIEGSEFKWVAREVAKECAGLPV 348 (395)
Q Consensus 281 ~gs~iivTtR~~~va-~~~~---~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPl 348 (395)
....||.||...... .... .....+.+.+.+.++-.+++...+......++. ....|++.+.|.|-
T Consensus 150 ~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~--~~~~la~~~~g~~g 219 (268)
T 2r62_A 150 APVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDV--NLQEVAKLTAGLAG 219 (268)
T ss_dssp SCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCCSSC--CTTTTTSSSCSSCH
T ss_pred CCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCCCcc--CHHHHHHHcCCCCH
Confidence 234566677654321 1111 123568899999999999998877432211111 02346667778654
No 60
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.16 E-value=1.1e-06 Score=70.88 Aligned_cols=46 Identities=20% Similarity=0.226 Sum_probs=33.5
Q ss_pred chhchHHHHHHHHHHhc--CCCceEEEEEecCCCcHHHHHHHHHHHhc
Q 047930 155 AFESRMSTLNDILDALK--NPDVNMLGIYGMGGIGKTTLAKEVARKAE 200 (395)
Q Consensus 155 ~~~gr~~~~~~l~~~l~--~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (395)
.++|+...+.++.+.+. ......|.|+|+.|+|||++|+.+++...
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~~ 49 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGR 49 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSST
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhCC
Confidence 36677777777777654 22334477999999999999999998643
No 61
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.16 E-value=1.4e-06 Score=72.93 Aligned_cols=116 Identities=16% Similarity=0.148 Sum_probs=63.0
Q ss_pred hHHHHHHHHHHhcC---CCceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCcc
Q 047930 159 RMSTLNDILDALKN---PDVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFADKLGLTLH 235 (395)
Q Consensus 159 r~~~~~~l~~~l~~---~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~ 235 (395)
....++.+..++.+ .....+.|+|+.|+|||||++.+++.......+. +++++ ..++...+.........
T Consensus 19 ~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~-~~~~~------~~~~~~~~~~~~~~~~~ 91 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIR-GYFFD------TKDLIFRLKHLMDEGKD 91 (180)
T ss_dssp HHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCC-CCEEE------HHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCe-EEEEE------HHHHHHHHHHHhcCchH
Confidence 34444555444432 3346789999999999999999998764222122 23333 44445544443321110
Q ss_pred ccchhhhHHHHHHHHhcCCeEEEEEeCCCC--ccccch--hccccCC-CCCCcEEEEeecc
Q 047930 236 EETESGRARSLCNRLKKEKRILVILDNIWE--NLDFQA--VGIPHGD-GHKGSKVLLTARS 291 (395)
Q Consensus 236 ~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~--~~~~~~--l~~~l~~-~~~gs~iivTtR~ 291 (395)
. .+.+.+. +.-+|||||++. .+.|.. +...+.. ...|..+|+||..
T Consensus 92 ----~----~~~~~~~--~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~ 142 (180)
T 3ec2_A 92 ----T----KFLKTVL--NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNY 142 (180)
T ss_dssp ----S----HHHHHHH--TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred ----H----HHHHHhc--CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 0 2333343 457999999973 333331 2111111 1246678888875
No 62
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.13 E-value=0.00011 Score=67.91 Aligned_cols=194 Identities=17% Similarity=0.111 Sum_probs=105.2
Q ss_pred ccccchhchHHHHHHHHHHhc-----CCCceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHH
Q 047930 151 KDYEAFESRMSTLNDILDALK-----NPDVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGE 225 (395)
Q Consensus 151 ~~~~~~~gr~~~~~~l~~~l~-----~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 225 (395)
.....++|.+..++.+...+. ......+.++|+.|+||||||+.+++..... | ...+.+-.....+
T Consensus 22 ~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~--~---~~~sg~~~~~~~~---- 92 (334)
T 1in4_A 22 KSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTN--I---HVTSGPVLVKQGD---- 92 (334)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCC--E---EEEETTTCCSHHH----
T ss_pred ccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCC--E---EEEechHhcCHHH----
Confidence 345567788777766655543 2234678999999999999999999876422 1 1111111111111
Q ss_pred HHHHhCCCccccchhhhHHHHHHHHhcCCeEEEEEeCCCCcc--ccchhccccCCC--------C----------CCcEE
Q 047930 226 FADKLGLTLHEETESGRARSLCNRLKKEKRILVILDNIWENL--DFQAVGIPHGDG--------H----------KGSKV 285 (395)
Q Consensus 226 i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~--~~~~l~~~l~~~--------~----------~gs~i 285 (395)
+..+...+ .++.++++|++.... ..+.+...+... . +...+
T Consensus 93 -----------------l~~~~~~~--~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~l 153 (334)
T 1in4_A 93 -----------------MAAILTSL--ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTL 153 (334)
T ss_dssp -----------------HHHHHHHC--CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEE
T ss_pred -----------------HHHHHHHc--cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEE
Confidence 11111111 234577788875432 111111110000 0 11222
Q ss_pred E-EeecchhhhhhcCC-CcceeecCCCChHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchHHHHHHHHHh------
Q 047930 286 L-LTARSLDVLSRKMD-SQQNFSFDVLKEDEAWSLFKKMAGDYIEGSEFKWVAREVAKECAGLPVSIVTVARAL------ 357 (395)
Q Consensus 286 i-vTtR~~~va~~~~~-~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~i~~~l------ 357 (395)
+ .|++...+...... ....+.+++.+.++..+++.+.+......- -.+.+..|++.+.|.|-.+..+...+
T Consensus 154 i~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~-~~~~~~~ia~~~~G~~R~a~~ll~~~~~~a~~ 232 (334)
T 1in4_A 154 VGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDVEI-EDAAAEMIAKRSRGTPRIAIRLTKRVRDMLTV 232 (334)
T ss_dssp EEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCCB-CHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHH
T ss_pred EEecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCCCc-CHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Confidence 2 24443322111111 123588999999999999998763211111 23468899999999997654443221
Q ss_pred h-C-C-CHHHHHHHHHHhc
Q 047930 358 R-N-K-RLFEWKDALEQLR 373 (395)
Q Consensus 358 ~-~-~-~~~~w~~~l~~l~ 373 (395)
. . . +.+.-+.+++.+.
T Consensus 233 ~~~~~It~~~v~~al~~~~ 251 (334)
T 1in4_A 233 VKADRINTDIVLKTMEVLN 251 (334)
T ss_dssp HTCSSBCHHHHHHHHHHHT
T ss_pred cCCCCcCHHHHHHHHHHhC
Confidence 2 2 2 7777888888765
No 63
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.12 E-value=5.9e-05 Score=72.69 Aligned_cols=199 Identities=18% Similarity=0.250 Sum_probs=107.6
Q ss_pred ccchhchHHHHHHHHH---HhcCC---------CceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHH
Q 047930 153 YEAFESRMSTLNDILD---ALKNP---------DVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIR 220 (395)
Q Consensus 153 ~~~~~gr~~~~~~l~~---~l~~~---------~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~ 220 (395)
..++.|.+..++++.+ .+..+ -.+-+.|+|++|+|||+||+.+++..... .+.++.+.....
T Consensus 15 f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~-----f~~is~~~~~~~- 88 (476)
T 2ce7_A 15 FKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVP-----FFHISGSDFVEL- 88 (476)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCC-----EEEEEGGGTTTC-
T ss_pred HHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCC-----eeeCCHHHHHHH-
Confidence 4556777665555443 33221 23458899999999999999999876432 234444332110
Q ss_pred HHHHHHHHHhCCCccccchhhhHHHHHHHHhcCCeEEEEEeCCCCcc----------------ccchhccccC--CCCCC
Q 047930 221 KIQGEFADKLGLTLHEETESGRARSLCNRLKKEKRILVILDNIWENL----------------DFQAVGIPHG--DGHKG 282 (395)
Q Consensus 221 ~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~----------------~~~~l~~~l~--~~~~g 282 (395)
+ ... .......+........+.+|+||+++... ....+...+. ....+
T Consensus 89 ---------~----~g~-~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~ 154 (476)
T 2ce7_A 89 ---------F----VGV-GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEG 154 (476)
T ss_dssp ---------C----TTH-HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGT
T ss_pred ---------H----hcc-cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCC
Confidence 0 000 11122333443333678999999996431 1112211110 12235
Q ss_pred cEEEEeecchhhhh-hcC---CCcceeecCCCChHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchH-HHHHH---H
Q 047930 283 SKVLLTARSLDVLS-RKM---DSQQNFSFDVLKEDEAWSLFKKMAGDYIEGSEFKWVAREVAKECAGLPV-SIVTV---A 354 (395)
Q Consensus 283 s~iivTtR~~~va~-~~~---~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPl-ai~~i---~ 354 (395)
..||.||....... ... .....+.+.+.+.++-.++|+.++......++.. ...+++.+.|..- -|..+ +
T Consensus 155 viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~--l~~la~~t~G~sgadL~~lv~~A 232 (476)
T 2ce7_A 155 IIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVN--LEIIAKRTPGFVGADLENLVNEA 232 (476)
T ss_dssp EEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCC--HHHHHHTCTTCCHHHHHHHHHHH
T ss_pred EEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhh--HHHHHHhcCCCcHHHHHHHHHHH
Confidence 66777776654321 111 1234788888888888888887775432222211 3458888988873 23322 1
Q ss_pred HHh--h-C--C-CHHHHHHHHHHhc
Q 047930 355 RAL--R-N--K-RLFEWKDALEQLR 373 (395)
Q Consensus 355 ~~l--~-~--~-~~~~w~~~l~~l~ 373 (395)
.++ + + . +.+....+++...
T Consensus 233 al~A~~~~~~~I~~~dl~~al~~v~ 257 (476)
T 2ce7_A 233 ALLAAREGRDKITMKDFEEAIDRVI 257 (476)
T ss_dssp HHHHHHTTCSSBCHHHHHHHHHHHC
T ss_pred HHHHHHcCCCeecHHHHHHHHHHHh
Confidence 122 1 2 1 6677888887764
No 64
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=98.11 E-value=7.5e-05 Score=72.45 Aligned_cols=179 Identities=13% Similarity=0.161 Sum_probs=100.3
Q ss_pred ccchhchHHHHHHHHHHhc-------------CCCceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCH
Q 047930 153 YEAFESRMSTLNDILDALK-------------NPDVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDI 219 (395)
Q Consensus 153 ~~~~~gr~~~~~~l~~~l~-------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~ 219 (395)
...+.|.+..+++|.+.+. .....-+.|+|++|+|||++|+.+++.... ..+.++++.
T Consensus 203 ~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~-----~fv~vn~~~---- 273 (489)
T 3hu3_A 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA-----FFFLINGPE---- 273 (489)
T ss_dssp GGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSS-----EEEEEEHHH----
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCC-----CEEEEEchH----
Confidence 4567888888887776653 234456889999999999999999887531 233444321
Q ss_pred HHHHHHHHHHhCCCccccchhhhHHHHHHHHhcCCeEEEEEeCCCCcc-------------ccchhccccC--CCCCCcE
Q 047930 220 RKIQGEFADKLGLTLHEETESGRARSLCNRLKKEKRILVILDNIWENL-------------DFQAVGIPHG--DGHKGSK 284 (395)
Q Consensus 220 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~-------------~~~~l~~~l~--~~~~gs~ 284 (395)
+ ...+ ... .......+.+....+++.+|+||+++... ....+...+. ....+..
T Consensus 274 --l----~~~~----~g~-~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~ 342 (489)
T 3hu3_A 274 --I----MSKL----AGE-SESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVI 342 (489)
T ss_dssp --H----HTSC----TTH-HHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEE
T ss_pred --h----hhhh----cch-hHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceE
Confidence 1 1110 000 11122333333334678899999994221 0111211111 1223456
Q ss_pred EEEeecchhh-hhhc---CCCcceeecCCCChHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCc-hHHHHHH
Q 047930 285 VLLTARSLDV-LSRK---MDSQQNFSFDVLKEDEAWSLFKKMAGDYIEGSEFKWVAREVAKECAGL-PVSIVTV 353 (395)
Q Consensus 285 iivTtR~~~v-a~~~---~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~Gl-Plai~~i 353 (395)
||.||..... .... ......+.+...+.++-.++|...+.......+. ...++++.+.|. +-.|..+
T Consensus 343 vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~--~l~~la~~t~g~s~~dL~~L 414 (489)
T 3hu3_A 343 VMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDV--DLEQVANETHGHVGADLAAL 414 (489)
T ss_dssp EEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTC--CHHHHHHTCTTCCHHHHHHH
T ss_pred EEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchh--hHHHHHHHccCCcHHHHHHH
Confidence 6667665422 1111 1223478999999999999999887543222211 135677788875 5445544
No 65
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=98.09 E-value=1.4e-05 Score=72.77 Aligned_cols=46 Identities=24% Similarity=0.330 Sum_probs=35.5
Q ss_pred chhchHHHHHHHHHHhcC--------------CCceEEEEEecCCCcHHHHHHHHHHHhc
Q 047930 155 AFESRMSTLNDILDALKN--------------PDVNMLGIYGMGGIGKTTLAKEVARKAE 200 (395)
Q Consensus 155 ~~~gr~~~~~~l~~~l~~--------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (395)
.++|++..++.+...+.. .....+.++|++|+|||++|+.+.+...
T Consensus 16 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~ 75 (310)
T 1ofh_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN 75 (310)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred hcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 367888877777665532 2345688999999999999999998763
No 66
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.07 E-value=5.5e-06 Score=70.63 Aligned_cols=112 Identities=17% Similarity=0.112 Sum_probs=61.3
Q ss_pred HHHHHHHHhcCC----CceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCcccc
Q 047930 162 TLNDILDALKNP----DVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFADKLGLTLHEE 237 (395)
Q Consensus 162 ~~~~l~~~l~~~----~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~ 237 (395)
.++.+..++... ....+.|+|++|+|||+||+.+++....+ ...++|++++ ++...+.......
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~--~~~~~~~~~~------~~~~~~~~~~~~~---- 104 (202)
T 2w58_A 37 AIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKR--NVSSLIVYVP------ELFRELKHSLQDQ---- 104 (202)
T ss_dssp HHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTT--TCCEEEEEHH------HHHHHHHHC---C----
T ss_pred HHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEEhH------HHHHHHHHHhccc----
Confidence 445555555422 22678899999999999999999887543 3345666543 4444444332211
Q ss_pred chhhhHHHHHHHHhcCCeEEEEEeCCCCc--cccch--hcc-ccCCC-CCCcEEEEeecc
Q 047930 238 TESGRARSLCNRLKKEKRILVILDNIWEN--LDFQA--VGI-PHGDG-HKGSKVLLTARS 291 (395)
Q Consensus 238 ~~~~~~~~l~~~l~~~kr~LlVlDdv~~~--~~~~~--l~~-~l~~~-~~gs~iivTtR~ 291 (395)
. ...+.+.+.. .-+|||||++.. ..|.. +.. .+... ..+.++|+||..
T Consensus 105 ~----~~~~~~~~~~--~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~ 158 (202)
T 2w58_A 105 T----MNEKLDYIKK--VPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNF 158 (202)
T ss_dssp C----CHHHHHHHHH--SSEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESS
T ss_pred h----HHHHHHHhcC--CCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCC
Confidence 1 1223344432 239999999653 34432 221 11111 235568888874
No 67
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=98.04 E-value=1.3e-05 Score=73.09 Aligned_cols=104 Identities=15% Similarity=0.257 Sum_probs=57.4
Q ss_pred hhchHHHHHHHHHHhcC---------CCceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHH
Q 047930 156 FESRMSTLNDILDALKN---------PDVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEF 226 (395)
Q Consensus 156 ~~gr~~~~~~l~~~l~~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 226 (395)
++|....++.+...+.. .....+.++|++|+|||++|+.+++..... -...+.++++...... ....+
T Consensus 19 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~--~~~~~~~~~~~~~~~~-~~~~l 95 (311)
T 4fcw_A 19 VVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDT--EEAMIRIDMTEYMEKH-AVSRL 95 (311)
T ss_dssp CCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSC--GGGEEEEEGGGCCSTT-HHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCC--CcceEEeecccccccc-cHHHh
Confidence 56777777766665542 123578999999999999999999876422 1224555655432211 11111
Q ss_pred HHHhCCCccccchhhhHHHHHHHHhcCCeEEEEEeCCCCc
Q 047930 227 ADKLGLTLHEETESGRARSLCNRLKKEKRILVILDNIWEN 266 (395)
Q Consensus 227 ~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~ 266 (395)
++....... ......+...+......+|+||++...
T Consensus 96 ---~g~~~~~~~-~~~~~~~~~~~~~~~~~vl~lDEi~~l 131 (311)
T 4fcw_A 96 ---IGAPPGYVG-YEEGGQLTEAVRRRPYSVILFDAIEKA 131 (311)
T ss_dssp ---HCCCTTSTT-TTTCCHHHHHHHHCSSEEEEEETGGGS
T ss_pred ---cCCCCcccc-ccccchHHHHHHhCCCeEEEEeChhhc
Confidence 222111100 000112334444344579999999754
No 68
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.96 E-value=8.9e-05 Score=71.52 Aligned_cols=114 Identities=9% Similarity=-0.075 Sum_probs=64.7
Q ss_pred EEEEEeCCCCc--cccchhccccCCCCCCcEEE-Ee---------ec----chhhhhhcCCCcceeecCCCChHHHHHHH
Q 047930 256 ILVILDNIWEN--LDFQAVGIPHGDGHKGSKVL-LT---------AR----SLDVLSRKMDSQQNFSFDVLKEDEAWSLF 319 (395)
Q Consensus 256 ~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~ii-vT---------tR----~~~va~~~~~~~~~~~l~~L~~~e~~~lf 319 (395)
-++++|++... +..+.+...+...... .+| .| |. ...+.....+....+.+.+++.++..+++
T Consensus 297 ~VliIDEa~~l~~~a~~aLlk~lEe~~~~-~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~~~~~~~~~~~~e~~~iL 375 (456)
T 2c9o_A 297 GVLFVDEVHMLDIECFTYLHRALESSIAP-IVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMIIRTMLYTPQEMKQII 375 (456)
T ss_dssp CEEEEESGGGCBHHHHHHHHHHTTSTTCC-EEEEEECCSEEECBTTSSCEEETTCCHHHHTTEEEEECCCCCHHHHHHHH
T ss_pred eEEEEechhhcCHHHHHHHHHHhhccCCC-EEEEecCCccccccccccccccccCChhHHhhcceeeCCCCCHHHHHHHH
Confidence 38999999754 3445554444332223 344 34 22 11121223345567899999999999999
Q ss_pred HHhhCCCCCCCchHHHHHHHHHHc-CCchHHHHHHHHH---hh---C--C-CHHHHHHHHHH
Q 047930 320 KKMAGDYIEGSEFKWVAREVAKEC-AGLPVSIVTVARA---LR---N--K-RLFEWKDALEQ 371 (395)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~i~~~c-~GlPlai~~i~~~---l~---~--~-~~~~w~~~l~~ 371 (395)
...+..... .--.+....|++.+ +|.|.....+... ++ + + +.+.-+.++..
T Consensus 376 ~~~~~~~~~-~~~~~~~~~i~~~a~~g~~r~a~~ll~~a~~~A~~~~~~~v~~~~v~~~~~~ 436 (456)
T 2c9o_A 376 KIRAQTEGI-NISEEALNHLGEIGTKTTLRYSVQLLTPANLLAKINGKDSIEKEHVEEISEL 436 (456)
T ss_dssp HHHHHHHTC-CBCHHHHHHHHHHHHHSCHHHHHHTHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHhCC-CCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhcCCCccCHHHHHHHHHH
Confidence 887631111 11123567888888 8888765554332 22 2 2 56666666554
No 69
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.94 E-value=4.7e-05 Score=77.67 Aligned_cols=153 Identities=12% Similarity=0.152 Sum_probs=86.2
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCccccchhhhHHHHHHHHhcC
Q 047930 174 DVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFADKLGLTLHEETESGRARSLCNRLKKE 253 (395)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 253 (395)
.++-|.++|++|+|||+||+.+++..... .+.++.+. +.. .... .....+..+.+.....
T Consensus 237 ~p~GILL~GPPGTGKT~LAraiA~elg~~-----~~~v~~~~----------l~s----k~~g-ese~~lr~lF~~A~~~ 296 (806)
T 3cf2_A 237 PPRGILLYGPPGTGKTLIARAVANETGAF-----FFLINGPE----------IMS----KLAG-ESESNLRKAFEEAEKN 296 (806)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHTTTTCE-----EEEEEHHH----------HHS----SCTT-HHHHHHHHHHHHHTTS
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCCe-----EEEEEhHH----------hhc----ccch-HHHHHHHHHHHHHHHc
Confidence 35678999999999999999999876431 33444321 110 0001 1122344455555556
Q ss_pred CeEEEEEeCCCCcc--------cc-----chhcccc--CCCCCCcEEEEeecchhhhhhcC----CCcceeecCCCChHH
Q 047930 254 KRILVILDNIWENL--------DF-----QAVGIPH--GDGHKGSKVLLTARSLDVLSRKM----DSQQNFSFDVLKEDE 314 (395)
Q Consensus 254 kr~LlVlDdv~~~~--------~~-----~~l~~~l--~~~~~gs~iivTtR~~~va~~~~----~~~~~~~l~~L~~~e 314 (395)
.+.+|+||+++... .. ..+...+ .....+..||.||.......... .....+++...+.++
T Consensus 297 ~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~ 376 (806)
T 3cf2_A 297 APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG 376 (806)
T ss_dssp CSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHH
T ss_pred CCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecCChhhcCHHHhCCcccceEEecCCCCHHH
Confidence 78999999996531 00 1111111 01123444555665433221111 234578999889999
Q ss_pred HHHHHHHhhCCCCCCCchHHHHHHHHHHcCCchH
Q 047930 315 AWSLFKKMAGDYIEGSEFKWVAREVAKECAGLPV 348 (395)
Q Consensus 315 ~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPl 348 (395)
-.++|+.++.......+.. ...|++++.|.--
T Consensus 377 R~~IL~~~l~~~~~~~dvd--l~~lA~~T~Gfsg 408 (806)
T 3cf2_A 377 RLEILQIHTKNMKLADDVD--LEQVANETHGHVG 408 (806)
T ss_dssp HHHHHHHTCSSSEECTTCC--HHHHHHHCCSCCH
T ss_pred HHHHHHHHhcCCCCCcccC--HHHHHHhcCCCCH
Confidence 9999988775432222211 4578888888754
No 70
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.78 E-value=0.00046 Score=60.82 Aligned_cols=148 Identities=18% Similarity=0.208 Sum_probs=77.7
Q ss_pred EEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCccccchhhhHHHHHHHHhcCCeEE
Q 047930 178 LGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFADKLGLTLHEETESGRARSLCNRLKKEKRIL 257 (395)
Q Consensus 178 i~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~L 257 (395)
+.|+|+.|+|||||++.++..... ..+.++.. ++ .... . . .....+..+.+........+
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~~~-----~~i~~~~~------~~----~~~~-~---~-~~~~~i~~~~~~~~~~~~~i 111 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEARV-----PFITASGS------DF----VEMF-V---G-VGAARVRDLFETAKRHAPCI 111 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTC-----CEEEEEHH------HH----HHSC-T---T-HHHHHHHHHHHHHTTSSSEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCC-----CEEEeeHH------HH----HHHH-h---h-HHHHHHHHHHHHHHhcCCeE
Confidence 889999999999999999987641 22333321 11 1100 0 0 00112333444443345689
Q ss_pred EEEeCCCCcc------------c----cchhccccCCC--CCCcEEEEeecchhhhh-hcC---CCcceeecCCCChHHH
Q 047930 258 VILDNIWENL------------D----FQAVGIPHGDG--HKGSKVLLTARSLDVLS-RKM---DSQQNFSFDVLKEDEA 315 (395)
Q Consensus 258 lVlDdv~~~~------------~----~~~l~~~l~~~--~~gs~iivTtR~~~va~-~~~---~~~~~~~l~~L~~~e~ 315 (395)
+++|++.... . ...+...+..+ ....-++.||....... ... .....+.+...+.++-
T Consensus 112 ~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r 191 (254)
T 1ixz_A 112 VFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGR 191 (254)
T ss_dssp EEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHH
T ss_pred EEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHH
Confidence 9999994321 0 11121122111 12233445555544321 111 2345788998998888
Q ss_pred HHHHHHhhCCCCCCCchHHHHHHHHHHcCCch
Q 047930 316 WSLFKKMAGDYIEGSEFKWVAREVAKECAGLP 347 (395)
Q Consensus 316 ~~lf~~~~~~~~~~~~~~~~~~~i~~~c~GlP 347 (395)
.+++...+......++. ....+++.+.|.-
T Consensus 192 ~~il~~~~~~~~~~~~~--~~~~la~~~~G~~ 221 (254)
T 1ixz_A 192 EQILRIHARGKPLAEDV--DLALLAKRTPGFV 221 (254)
T ss_dssp HHHHHHHHTTSCBCTTC--CHHHHHHTCTTCC
T ss_pred HHHHHHHHcCCCCCccc--CHHHHHHHcCCCC
Confidence 88888776432222211 1346778888864
No 71
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.75 E-value=3.6e-05 Score=68.51 Aligned_cols=60 Identities=15% Similarity=0.208 Sum_probs=37.7
Q ss_pred cchhchHHHHHHHHHHhc--CCCceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCC
Q 047930 154 EAFESRMSTLNDILDALK--NPDVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQ 215 (395)
Q Consensus 154 ~~~~gr~~~~~~l~~~l~--~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~ 215 (395)
..++|....+..+.+.+. ......+.|+|..|+|||++|+.+++..... -...+.++++.
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~~~--~~~~~~v~~~~ 67 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRW--QGPFISLNCAA 67 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTSTTT--TSCEEEEEGGG
T ss_pred ccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcCcc--CCCeEEEecCC
Confidence 457788777777665543 1223457799999999999999999875422 12245566554
No 72
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.73 E-value=0.0002 Score=70.62 Aligned_cols=156 Identities=19% Similarity=0.186 Sum_probs=74.3
Q ss_pred hhchHHHHHHHHHHhc------CCCceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHHHH
Q 047930 156 FESRMSTLNDILDALK------NPDVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFADK 229 (395)
Q Consensus 156 ~~gr~~~~~~l~~~l~------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 229 (395)
++|-++....+.+.+. .....++.++|++|+||||||+.++...... ...++++...+...+.......
T Consensus 83 i~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~-----~~~i~~~~~~~~~~~~g~~~~~ 157 (543)
T 3m6a_A 83 HHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGRK-----FVRISLGGVRDESEIRGHRRTY 157 (543)
T ss_dssp CSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTCE-----EEEECCCC--------------
T ss_pred hccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcCCC-----eEEEEecccchhhhhhhHHHHH
Confidence 4555554444433221 2245689999999999999999999876421 2233333322222211111111
Q ss_pred hCCCccccchhhhHHHHHHHHhcCCeEEEEEeCCCCccc------cchhccccCC--------C-------CCCcEEEEe
Q 047930 230 LGLTLHEETESGRARSLCNRLKKEKRILVILDNIWENLD------FQAVGIPHGD--------G-------HKGSKVLLT 288 (395)
Q Consensus 230 l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~------~~~l~~~l~~--------~-------~~gs~iivT 288 (395)
.+.. . ........... ...-+++||+++.... ...+...+.. . .....+|.|
T Consensus 158 ig~~-----~-~~~~~~~~~a~-~~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~t 230 (543)
T 3m6a_A 158 VGAM-----P-GRIIQGMKKAG-KLNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIAT 230 (543)
T ss_dssp ------------CHHHHHHTTC-SSSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEE
T ss_pred hccC-----c-hHHHHHHHHhh-ccCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEEEec
Confidence 1110 0 01111112111 2344889999975421 1222222210 0 023456666
Q ss_pred ecchh-hhhhcCCCcceeecCCCChHHHHHHHHHhh
Q 047930 289 ARSLD-VLSRKMDSQQNFSFDVLKEDEAWSLFKKMA 323 (395)
Q Consensus 289 tR~~~-va~~~~~~~~~~~l~~L~~~e~~~lf~~~~ 323 (395)
|.... +..........+.+.+++.++-..++...+
T Consensus 231 tN~~~~l~~aL~~R~~vi~~~~~~~~e~~~Il~~~l 266 (543)
T 3m6a_A 231 ANNLATIPGPLRDRMEIINIAGYTEIEKLEIVKDHL 266 (543)
T ss_dssp CSSTTTSCHHHHHHEEEEECCCCCHHHHHHHHHHTH
T ss_pred cCccccCCHHHHhhcceeeeCCCCHHHHHHHHHHHH
Confidence 65432 111112233578999999999999988765
No 73
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.72 E-value=6.6e-06 Score=66.09 Aligned_cols=45 Identities=9% Similarity=0.096 Sum_probs=30.9
Q ss_pred chhchHHHHHHHHHHhcC--CCceEEEEEecCCCcHHHHHHHHHHHh
Q 047930 155 AFESRMSTLNDILDALKN--PDVNMLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 155 ~~~gr~~~~~~l~~~l~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
.++|+...+.++.+.+.. .....|.|+|..|+|||++|+.+++..
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC
Confidence 466777777776665541 223347799999999999999988654
No 74
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.67 E-value=0.00017 Score=65.53 Aligned_cols=46 Identities=17% Similarity=0.294 Sum_probs=34.0
Q ss_pred chhchHHHHHHHHHHhc--CCCceEEEEEecCCCcHHHHHHHHHHHhc
Q 047930 155 AFESRMSTLNDILDALK--NPDVNMLGIYGMGGIGKTTLAKEVARKAE 200 (395)
Q Consensus 155 ~~~gr~~~~~~l~~~l~--~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (395)
.++|+...+.++.+.+. ......+.|+|.+|+|||++|+.+++...
T Consensus 3 ~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~ 50 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACSA 50 (304)
T ss_dssp CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHSS
T ss_pred CcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhCc
Confidence 36677777777666554 23334577999999999999999998653
No 75
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.64 E-value=4.9e-05 Score=78.20 Aligned_cols=148 Identities=16% Similarity=0.256 Sum_probs=80.7
Q ss_pred chhchHHHHHHHHHHhc-------CC--CceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHH
Q 047930 155 AFESRMSTLNDILDALK-------NP--DVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGE 225 (395)
Q Consensus 155 ~~~gr~~~~~~l~~~l~-------~~--~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 225 (395)
.++|.+..++.+...+. .+ ....+.++|++|+|||++|+.+++..... -...+.++++.......
T Consensus 492 ~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~--~~~~i~i~~s~~~~~~~---- 565 (758)
T 3pxi_A 492 RVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGD--EESMIRIDMSEYMEKHS---- 565 (758)
T ss_dssp TSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSC--TTCEEEEEGGGGCSSCC----
T ss_pred cCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCC--CcceEEEechhcccccc----
Confidence 46788887777766654 11 12368999999999999999999886321 22345566543221100
Q ss_pred HHHHhCCCccccchhhhHHHHHHHHhcCCeEEEEEeCCCCcc--ccchhcccc-----CC------CCCCcEEEEeecch
Q 047930 226 FADKLGLTLHEETESGRARSLCNRLKKEKRILVILDNIWENL--DFQAVGIPH-----GD------GHKGSKVLLTARSL 292 (395)
Q Consensus 226 i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~--~~~~l~~~l-----~~------~~~gs~iivTtR~~ 292 (395)
. . ...+.+.+......+|+||++.... ....+...+ .+ .....+||+||...
T Consensus 566 ----------~-~----~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~ 630 (758)
T 3pxi_A 566 ----------T-S----GGQLTEKVRRKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVG 630 (758)
T ss_dssp ----------C-C-------CHHHHHHCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSS
T ss_pred ----------c-c----cchhhHHHHhCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCC
Confidence 0 0 1111222222334589999996542 122222111 11 12355788888731
Q ss_pred h-------------hhhhcCC-CcceeecCCCChHHHHHHHHHhh
Q 047930 293 D-------------VLSRKMD-SQQNFSFDVLKEDEAWSLFKKMA 323 (395)
Q Consensus 293 ~-------------va~~~~~-~~~~~~l~~L~~~e~~~lf~~~~ 323 (395)
. ....... ...++.+.+|++++...++...+
T Consensus 631 ~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 631 ASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMS 675 (758)
T ss_dssp TTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHH
Confidence 0 0010112 23589999999999988887665
No 76
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.62 E-value=0.0015 Score=58.38 Aligned_cols=148 Identities=19% Similarity=0.186 Sum_probs=77.9
Q ss_pred EEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCccccchhhhHHHHHHHHhcCCeEE
Q 047930 178 LGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFADKLGLTLHEETESGRARSLCNRLKKEKRIL 257 (395)
Q Consensus 178 i~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~L 257 (395)
+.|+|+.|+|||||++.++..... ..+.++.. ++ ..... . .....+..+.+......+.+
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~~~~-----~~i~~~~~------~~----~~~~~----~-~~~~~i~~~~~~~~~~~~~i 135 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGEARV-----PFITASGS------DF----VEMFV----G-VGAARVRDLFETAKRHAPCI 135 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTC-----CEEEEEHH------HH----HHSTT----T-HHHHHHHHHHHHHHTSCSEE
T ss_pred EEEECCCcChHHHHHHHHHHHcCC-----CEEEecHH------HH----HHHHh----h-HHHHHHHHHHHHHHhcCCcE
Confidence 889999999999999999987641 23333321 11 11000 0 00112233444443345689
Q ss_pred EEEeCCCCcc------------cc----chhccccCCCC--CCcEEEEeecchhhhh----hcCCCcceeecCCCChHHH
Q 047930 258 VILDNIWENL------------DF----QAVGIPHGDGH--KGSKVLLTARSLDVLS----RKMDSQQNFSFDVLKEDEA 315 (395)
Q Consensus 258 lVlDdv~~~~------------~~----~~l~~~l~~~~--~gs~iivTtR~~~va~----~~~~~~~~~~l~~L~~~e~ 315 (395)
+++|++.... .+ ..+...+..+. ....++.||....+.. ........+.+...+.++-
T Consensus 136 ~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r 215 (278)
T 1iy2_A 136 VFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGR 215 (278)
T ss_dssp EEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHH
T ss_pred EehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHH
Confidence 9999994210 11 11211221111 1233444555543321 1112345788999999988
Q ss_pred HHHHHHhhCCCCCCCchHHHHHHHHHHcCCch
Q 047930 316 WSLFKKMAGDYIEGSEFKWVAREVAKECAGLP 347 (395)
Q Consensus 316 ~~lf~~~~~~~~~~~~~~~~~~~i~~~c~GlP 347 (395)
.+++...+......++. ....++..+.|..
T Consensus 216 ~~il~~~~~~~~~~~~~--~~~~la~~~~G~~ 245 (278)
T 1iy2_A 216 EQILRIHARGKPLAEDV--DLALLAKRTPGFV 245 (278)
T ss_dssp HHHHHHHHTTSCBCTTC--CHHHHHHTCTTCC
T ss_pred HHHHHHHHccCCCCccc--CHHHHHHHcCCCC
Confidence 88888776432222221 1346778888865
No 77
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.60 E-value=0.0021 Score=57.41 Aligned_cols=127 Identities=14% Similarity=0.186 Sum_probs=70.2
Q ss_pred EEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCccccchhhhHHHHHHHHhcCCeEE
Q 047930 178 LGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFADKLGLTLHEETESGRARSLCNRLKKEKRIL 257 (395)
Q Consensus 178 i~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~L 257 (395)
+.++|++|+|||||++.++..... ..+++..+.-.+. ... .....+..+.+......+++
T Consensus 47 vlL~Gp~GtGKTtLakala~~~~~-----~~i~i~g~~l~~~--------------~~~-~~~~~i~~vf~~a~~~~p~i 106 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANESGL-----NFISVKGPELLNM--------------YVG-ESERAVRQVFQRAKNSAPCV 106 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHTTC-----EEEEEETTTTCSS--------------TTH-HHHHHHHHHHHHHHHTCSEE
T ss_pred EEEECCCCCcHHHHHHHHHHHcCC-----CEEEEEcHHHHhh--------------hhh-HHHHHHHHHHHHHHhcCCCe
Confidence 899999999999999999987542 2344443321110 000 00112233344332246789
Q ss_pred EEEeCCCCccc---------c----chhccccC--CCCCCcEEEEeecchhhhhhc----CCCcceeecCCCChHHHHHH
Q 047930 258 VILDNIWENLD---------F----QAVGIPHG--DGHKGSKVLLTARSLDVLSRK----MDSQQNFSFDVLKEDEAWSL 318 (395)
Q Consensus 258 lVlDdv~~~~~---------~----~~l~~~l~--~~~~gs~iivTtR~~~va~~~----~~~~~~~~l~~L~~~e~~~l 318 (395)
+++|+++.... . ..+...+. ......-++.+|....+.... ..-...+.+...+.++-.++
T Consensus 107 ~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~i 186 (274)
T 2x8a_A 107 IFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAI 186 (274)
T ss_dssp EEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHH
T ss_pred EeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHH
Confidence 99999964210 0 01111111 112234455666655443111 12345788988899999999
Q ss_pred HHHhhC
Q 047930 319 FKKMAG 324 (395)
Q Consensus 319 f~~~~~ 324 (395)
|+....
T Consensus 187 l~~~~~ 192 (274)
T 2x8a_A 187 LKTITK 192 (274)
T ss_dssp HHHHTT
T ss_pred HHHHHh
Confidence 988764
No 78
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.55 E-value=0.00064 Score=65.86 Aligned_cols=197 Identities=16% Similarity=0.211 Sum_probs=101.9
Q ss_pred ccchhchHHHHHHH---HHHhcCC---------CceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHH
Q 047930 153 YEAFESRMSTLNDI---LDALKNP---------DVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIR 220 (395)
Q Consensus 153 ~~~~~gr~~~~~~l---~~~l~~~---------~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~ 220 (395)
..++.|.+..+.++ +..+..+ -.+-+.|+|++|+||||||+.++..... ..+.++.+.-...
T Consensus 30 f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~-----~~i~i~g~~~~~~- 103 (499)
T 2dhr_A 30 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARV-----PFITASGSDFVEM- 103 (499)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTC-----CEEEEEGGGGTSS-
T ss_pred HHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCC-----CEEEEehhHHHHh-
Confidence 45567766555444 4433321 1234889999999999999999987642 2344444321110
Q ss_pred HHHHHHHHHhCCCccccchhhhHHHHHHHHh---cCCeEEEEEeCCCCcc------------c----cchhccccC--CC
Q 047930 221 KIQGEFADKLGLTLHEETESGRARSLCNRLK---KEKRILVILDNIWENL------------D----FQAVGIPHG--DG 279 (395)
Q Consensus 221 ~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~---~~kr~LlVlDdv~~~~------------~----~~~l~~~l~--~~ 279 (395)
. .......+...+. ...+.++++|+++... . ...+...+. ..
T Consensus 104 -------------~----~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~ 166 (499)
T 2dhr_A 104 -------------F----VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK 166 (499)
T ss_dssp -------------C----TTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCS
T ss_pred -------------h----hhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhccccc
Confidence 0 0001111222222 1235899999995321 0 112211121 11
Q ss_pred CCCcEEEEeecchhhhh-hcC---CCcceeecCCCChHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCch-HHHHHH-
Q 047930 280 HKGSKVLLTARSLDVLS-RKM---DSQQNFSFDVLKEDEAWSLFKKMAGDYIEGSEFKWVAREVAKECAGLP-VSIVTV- 353 (395)
Q Consensus 280 ~~gs~iivTtR~~~va~-~~~---~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~GlP-lai~~i- 353 (395)
..+..++.||....... ... .....+.+...+.++-.++++.++......++. ....|+..+.|+. --|..+
T Consensus 167 ~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv--~l~~lA~~t~G~~gadL~~lv 244 (499)
T 2dhr_A 167 DTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDV--DLALLAKRTPGFVGADLENLL 244 (499)
T ss_dssp SCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSS--TTHHHHTTSCSCCHHHHHHHH
T ss_pred CccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHH--HHHHHHHhcCCCCHHHHHHHH
Confidence 22345555666554321 111 223478898889888889998776432222221 1345777888876 222222
Q ss_pred --HHHhh---C--C-CHHHHHHHHHHhcC
Q 047930 354 --ARALR---N--K-RLFEWKDALEQLRR 374 (395)
Q Consensus 354 --~~~l~---~--~-~~~~w~~~l~~l~~ 374 (395)
+.++. + . +.+....+++....
T Consensus 245 ~~Aa~~A~~~~~~~It~~dl~~al~~v~~ 273 (499)
T 2dhr_A 245 NEAALLAAREGRRKITMKDLEEAADRVMM 273 (499)
T ss_dssp HHHHHHHTTTCCSSCCSHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCCccCHHHHHHHHHHHhc
Confidence 22221 1 1 56777788777544
No 79
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=97.53 E-value=0.00011 Score=67.62 Aligned_cols=151 Identities=11% Similarity=0.125 Sum_probs=80.8
Q ss_pred cchhchHHHHHHHHHHhcCCCceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCC
Q 047930 154 EAFESRMSTLNDILDALKNPDVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFADKLGLT 233 (395)
Q Consensus 154 ~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~ 233 (395)
..++|++..++.+...+..++ .+.++|++|+|||+||+.+.+..... ...+.++......++.....
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~~--~vll~G~pGtGKT~la~~la~~~~~~-----~~~i~~~~~~~~~~l~g~~~------ 93 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTGG--HILLEGVPGLAKTLSVNTLAKTMDLD-----FHRIQFTPDLLPSDLIGTMI------ 93 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHTC--CEEEESCCCHHHHHHHHHHHHHTTCC-----EEEEECCTTCCHHHHHEEEE------
T ss_pred cceeCcHHHHHHHHHHHHcCC--eEEEECCCCCcHHHHHHHHHHHhCCC-----eEEEecCCCCChhhcCCcee------
Confidence 346788888888777766443 57899999999999999999875421 23344443333333221100
Q ss_pred ccccchhhhHHHHHHHHhcC--CeEEEEEeCCCCcc--ccchhccccC-----------CCCCCcEEEEeecchh-----
Q 047930 234 LHEETESGRARSLCNRLKKE--KRILVILDNIWENL--DFQAVGIPHG-----------DGHKGSKVLLTARSLD----- 293 (395)
Q Consensus 234 ~~~~~~~~~~~~l~~~l~~~--kr~LlVlDdv~~~~--~~~~l~~~l~-----------~~~~gs~iivTtR~~~----- 293 (395)
........ ....+ ...+|+||++.... ....+...+. .......||.|+....
T Consensus 94 -~~~~~~~~------~~~~g~l~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np~~~~~~~ 166 (331)
T 2r44_A 94 -YNQHKGNF------EVKKGPVFSNFILADEVNRSPAKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNPVEQEGTY 166 (331)
T ss_dssp -EETTTTEE------EEEECTTCSSEEEEETGGGSCHHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECTTCCSCCC
T ss_pred -ecCCCCce------EeccCcccccEEEEEccccCCHHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCCCcccCcc
Confidence 00000000 00001 12589999996542 1111111110 0122344555555221
Q ss_pred -hhhhcCCCcc-eeecCCCChHHHHHHHHHhhC
Q 047930 294 -VLSRKMDSQQ-NFSFDVLKEDEAWSLFKKMAG 324 (395)
Q Consensus 294 -va~~~~~~~~-~~~l~~L~~~e~~~lf~~~~~ 324 (395)
+......... .+.+.+.+.++-.+++.+...
T Consensus 167 ~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~ 199 (331)
T 2r44_A 167 PLPEAQVDRFMMKIHLTYLDKESELEVMRRVSN 199 (331)
T ss_dssp CCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHC
T ss_pred cCCHHHHhheeEEEEcCCCCHHHHHHHHHhccc
Confidence 1111122223 589999999999999988874
No 80
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.51 E-value=0.00025 Score=73.02 Aligned_cols=159 Identities=14% Similarity=0.177 Sum_probs=82.6
Q ss_pred chhchHHHHHHHHHHhc-------C--CCceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHH
Q 047930 155 AFESRMSTLNDILDALK-------N--PDVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGE 225 (395)
Q Consensus 155 ~~~gr~~~~~~l~~~l~-------~--~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 225 (395)
.++|.+..++.+...+. + .....+.++|++|+|||++|+.+.+... ...+.++++.......
T Consensus 459 ~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~-----~~~~~i~~s~~~~~~~---- 529 (758)
T 1r6b_X 459 LVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG-----IELLRFDMSEYMERHT---- 529 (758)
T ss_dssp TSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHT-----CEEEEEEGGGCSSSSC----
T ss_pred hccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhc-----CCEEEEechhhcchhh----
Confidence 35677777776666553 1 1234789999999999999999998763 2244555543221100
Q ss_pred HHHHhCCCccccchhhhHHHHHHHHhcCCeEEEEEeCCCCcc--ccchhccccC-----CC------CCCcEEEEeecch
Q 047930 226 FADKLGLTLHEETESGRARSLCNRLKKEKRILVILDNIWENL--DFQAVGIPHG-----DG------HKGSKVLLTARSL 292 (395)
Q Consensus 226 i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~--~~~~l~~~l~-----~~------~~gs~iivTtR~~ 292 (395)
+..-++.+.. .........+.+.+......+|+||++.... ....+...+. +. .....||.||...
T Consensus 530 ~~~l~g~~~g-~~g~~~~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~tsN~~ 608 (758)
T 1r6b_X 530 VSRLIGAPPG-YVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAG 608 (758)
T ss_dssp CSSSCCCCSC-SHHHHHTTHHHHHHHHCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEEETTTEEEECTTEEEEEEECSS
T ss_pred HhhhcCCCCC-CcCccccchHHHHHHhCCCcEEEEeCccccCHHHHHHHHHHhcCcEEEcCCCCEEecCCeEEEEecCcc
Confidence 0000111110 0000111123344443456899999997542 2222222111 10 1235577777531
Q ss_pred h--------------------------hhhhcCC-CcceeecCCCChHHHHHHHHHhh
Q 047930 293 D--------------------------VLSRKMD-SQQNFSFDVLKEDEAWSLFKKMA 323 (395)
Q Consensus 293 ~--------------------------va~~~~~-~~~~~~l~~L~~~e~~~lf~~~~ 323 (395)
. ....... ....+.+.+|+.++...++...+
T Consensus 609 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~l~~~~~~~i~~~~l 666 (758)
T 1r6b_X 609 VRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFI 666 (758)
T ss_dssp CC-----------------CHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHH
T ss_pred hhhhhhcccCccccchHHHHHHHHHHhcCHHHHhhCCcceeeCCCCHHHHHHHHHHHH
Confidence 1 0000111 22568899999988888887665
No 81
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.38 E-value=0.0012 Score=57.52 Aligned_cols=91 Identities=12% Similarity=0.132 Sum_probs=55.5
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhcccC----CCCEEEEEEeCCcCCHHHHHHHHHHHhCCCcc----------ccchh
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARKAENEK----LFDQVIFVEVSQIQDIRKIQGEFADKLGLTLH----------EETES 240 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~----~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~----------~~~~~ 240 (395)
-.++.|+|++|+|||||+..+........ .-..++|++....++...+ ..++..++.... .....
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~ 102 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERL-LAVAERYGLSGSDVLDNVAYARAFNTD 102 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHH-HHHHHHcCCCHHHHhhCeEEEecCCHH
Confidence 35799999999999999999987532211 1356889888775555443 334455544321 00111
Q ss_pred ---hhHHHHHHHHhcCCeEEEEEeCCCCc
Q 047930 241 ---GRARSLCNRLKKEKRILVILDNIWEN 266 (395)
Q Consensus 241 ---~~~~~l~~~l~~~kr~LlVlDdv~~~ 266 (395)
..+..+.+.+...+.-+||||++...
T Consensus 103 ~~~~~~~~~~~~~~~~~~~lliiD~~~~~ 131 (243)
T 1n0w_A 103 HQTQLLYQASAMMVESRYALLIVDSATAL 131 (243)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETSSGG
T ss_pred HHHHHHHHHHHHHhcCCceEEEEeCchHH
Confidence 12233444454457889999998643
No 82
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.34 E-value=0.0007 Score=69.87 Aligned_cols=153 Identities=12% Similarity=0.166 Sum_probs=82.1
Q ss_pred ccchhchHHHHHHHHHHhc-------------CCCceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCH
Q 047930 153 YEAFESRMSTLNDILDALK-------------NPDVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDI 219 (395)
Q Consensus 153 ~~~~~gr~~~~~~l~~~l~-------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~ 219 (395)
...++|.+..+++|.+++. -.....+.|+|++|+||||||+.+...... ..+.++.+.-
T Consensus 203 ~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~-----~~i~v~~~~l--- 274 (806)
T 1ypw_A 203 YDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA-----FFFLINGPEI--- 274 (806)
T ss_dssp GGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTC-----EEEEEEHHHH---
T ss_pred HHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCC-----cEEEEEchHh---
Confidence 4557777766666665543 123457899999999999999999876532 1233432111
Q ss_pred HHHHHHHHHHhCCCccccchhhhHHHHHHHHhcCCeEEEEEeCCCCccc-------------cchhccccC--CCCCCcE
Q 047930 220 RKIQGEFADKLGLTLHEETESGRARSLCNRLKKEKRILVILDNIWENLD-------------FQAVGIPHG--DGHKGSK 284 (395)
Q Consensus 220 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~-------------~~~l~~~l~--~~~~gs~ 284 (395)
...... .....+..+.+......+.++++|++..... ...+...+. ....+..
T Consensus 275 -----------~~~~~g-~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~ 342 (806)
T 1ypw_A 275 -----------MSKLAG-ESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVI 342 (806)
T ss_dssp -----------SSSSTT-HHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCE
T ss_pred -----------hhhhhh-hHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEE
Confidence 000000 0111233333333334678999999953210 011111111 1122445
Q ss_pred EEEeecchhhhhhcC----CCcceeecCCCChHHHHHHHHHhhCC
Q 047930 285 VLLTARSLDVLSRKM----DSQQNFSFDVLKEDEAWSLFKKMAGD 325 (395)
Q Consensus 285 iivTtR~~~va~~~~----~~~~~~~l~~L~~~e~~~lf~~~~~~ 325 (395)
+|.||.......... .....+.+...+.++-.+++...+..
T Consensus 343 vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~ 387 (806)
T 1ypw_A 343 VMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKN 387 (806)
T ss_dssp EEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTT
T ss_pred EecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHhc
Confidence 555655432211111 22346788889999999999877643
No 83
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=97.29 E-value=0.0026 Score=58.74 Aligned_cols=159 Identities=8% Similarity=-0.053 Sum_probs=97.5
Q ss_pred CCceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCccccchhhhHHHHHHHHhc
Q 047930 173 PDVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFADKLGLTLHEETESGRARSLCNRLKK 252 (395)
Q Consensus 173 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 252 (395)
.-.++..++|+.|.||++.+..+....... .|+....+.+....++.++...+.. .-+ .
T Consensus 16 ~~~~~yl~~G~e~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~-------------------~pl-f 74 (343)
T 1jr3_D 16 GLRAAYLLLGNDPLLLQESQDAVRQVAAAQ-GFEEHHTFSIDPNTDWNAIFSLCQA-------------------MSL-F 74 (343)
T ss_dssp CCCSEEEEEESCHHHHHHHHHHHHHHHHHH-TCCEEEEEECCTTCCHHHHHHHHHH-------------------HHH-C
T ss_pred CCCcEEEEECCcHHHHHHHHHHHHHHHHhC-CCCeeEEEEecCCCCHHHHHHHhcC-------------------cCC-c
Confidence 345788999999999999999998765432 2432222233333444433322211 011 2
Q ss_pred CCeEEEEEeCCCC-c--cccchhccccCCCCCCcEEEEeecc-------hhhhhhcCCCcceeecCCCChHHHHHHHHHh
Q 047930 253 EKRILVILDNIWE-N--LDFQAVGIPHGDGHKGSKVLLTARS-------LDVLSRKMDSQQNFSFDVLKEDEAWSLFKKM 322 (395)
Q Consensus 253 ~kr~LlVlDdv~~-~--~~~~~l~~~l~~~~~gs~iivTtR~-------~~va~~~~~~~~~~~l~~L~~~e~~~lf~~~ 322 (395)
+++-++|+|++.. . ..++.+...+....+++.+|++|.. ..+.......+..++..+++.++....+.+.
T Consensus 75 ~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~~ 154 (343)
T 1jr3_D 75 ASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAAR 154 (343)
T ss_dssp CSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHHH
Confidence 5577889999865 3 4455555555444457777766643 1233333455678999999999999888887
Q ss_pred hCCCCCCCchHHHHHHHHHHcCCchHHHHHH
Q 047930 323 AGDYIEGSEFKWVAREVAKECAGLPVSIVTV 353 (395)
Q Consensus 323 ~~~~~~~~~~~~~~~~i~~~c~GlPlai~~i 353 (395)
+......-+ .+.+..+++.++|.+..+...
T Consensus 155 ~~~~g~~i~-~~a~~~l~~~~~gdl~~~~~e 184 (343)
T 1jr3_D 155 AKQLNLELD-DAANQVLCYCYEGNLLALAQA 184 (343)
T ss_dssp HHHTTCEEC-HHHHHHHHHSSTTCHHHHHHH
T ss_pred HHHcCCCCC-HHHHHHHHHHhchHHHHHHHH
Confidence 742221111 235778888999988877653
No 84
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.25 E-value=0.0002 Score=64.80 Aligned_cols=27 Identities=37% Similarity=0.422 Sum_probs=23.8
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhc
Q 047930 174 DVNMLGIYGMGGIGKTTLAKEVARKAE 200 (395)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (395)
.++.+.++|++|+|||+||+.+++...
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l~ 61 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKMG 61 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 356788999999999999999999874
No 85
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.24 E-value=0.00071 Score=58.46 Aligned_cols=46 Identities=22% Similarity=0.304 Sum_probs=31.1
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHH
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGE 225 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 225 (395)
.++.|.|++|+|||||++.+....... -..++|++... ....+...
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~~~~--~~~v~~~~~~~--~~~~~~~~ 69 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKGLRD--GDPCIYVTTEE--SRDSIIRQ 69 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHH--TCCEEEEESSS--CHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHC--CCeEEEEEccc--CHHHHHHH
Confidence 578999999999999999998654322 12356666543 34444443
No 86
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=97.24 E-value=0.0022 Score=59.95 Aligned_cols=26 Identities=27% Similarity=0.411 Sum_probs=22.6
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhc
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARKAE 200 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (395)
...+.++|++|+|||++|+.+++...
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l~ 97 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHLD 97 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhC
Confidence 35688999999999999999998763
No 87
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.22 E-value=0.00037 Score=72.63 Aligned_cols=46 Identities=26% Similarity=0.404 Sum_probs=34.8
Q ss_pred chhchHHHHHHHHHHhcC-------C--CceEEEEEecCCCcHHHHHHHHHHHhc
Q 047930 155 AFESRMSTLNDILDALKN-------P--DVNMLGIYGMGGIGKTTLAKEVARKAE 200 (395)
Q Consensus 155 ~~~gr~~~~~~l~~~l~~-------~--~~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (395)
.++|.+..+..+...+.. + ....+.|+|+.|+|||++|+.+.+...
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~ 613 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLF 613 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhc
Confidence 467888777777665531 1 125788999999999999999998763
No 88
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.22 E-value=0.0025 Score=57.51 Aligned_cols=86 Identities=10% Similarity=0.130 Sum_probs=56.5
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCccc-----cchhhhH-HHHHHH
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFADKLGLTLHE-----ETESGRA-RSLCNR 249 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~-~~l~~~ 249 (395)
.++-|.|++|+|||||+.++......+..-..++|++....++.. .+++++...+. ....+.+ ..+.+.
T Consensus 29 GiteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~~ 103 (333)
T 3io5_A 29 GLLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVNQ 103 (333)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHHH
Confidence 368899999999999999988765432112458899988877653 36777765432 1111222 233344
Q ss_pred H---hcCCeEEEEEeCCCCc
Q 047930 250 L---KKEKRILVILDNIWEN 266 (395)
Q Consensus 250 l---~~~kr~LlVlDdv~~~ 266 (395)
+ ..++.-|||+|-+...
T Consensus 104 l~~i~~~~~~lvVIDSI~aL 123 (333)
T 3io5_A 104 LDAIERGEKVVVFIDSLGNL 123 (333)
T ss_dssp HHTCCTTCCEEEEEECSTTC
T ss_pred HHHhhccCceEEEEeccccc
Confidence 3 4467889999998654
No 89
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.18 E-value=0.00072 Score=61.21 Aligned_cols=69 Identities=14% Similarity=0.219 Sum_probs=42.3
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEe--CCcCCHHHHHHHHHHHhCCCccccchhhhHHHHHHHHhcC
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEV--SQIQDIRKIQGEFADKLGLTLHEETESGRARSLCNRLKKE 253 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~--s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 253 (395)
+++.|+|++|+|||+||.++...... .++|++. ....+. . .......+..+.+.+.+
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~~G~-----~VlyIs~~~eE~v~~-------------~--~~~le~~l~~i~~~l~~- 182 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEALGG-----KDKYATVRFGEPLSG-------------Y--NTDFNVFVDDIARAMLQ- 182 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHHHHT-----TSCCEEEEBSCSSTT-------------C--BCCHHHHHHHHHHHHHH-
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhCCC-----CEEEEEecchhhhhh-------------h--hcCHHHHHHHHHHHHhh-
Confidence 56789999999999999999876211 2346666 222110 0 01122334455566653
Q ss_pred CeEEEEEeCCCCc
Q 047930 254 KRILVILDNIWEN 266 (395)
Q Consensus 254 kr~LlVlDdv~~~ 266 (395)
.+ +||||++...
T Consensus 183 ~~-LLVIDsI~aL 194 (331)
T 2vhj_A 183 HR-VIVIDSLKNV 194 (331)
T ss_dssp CS-EEEEECCTTT
T ss_pred CC-EEEEeccccc
Confidence 34 9999999653
No 90
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.17 E-value=0.0025 Score=54.42 Aligned_cols=44 Identities=23% Similarity=0.213 Sum_probs=33.2
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHH
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQ 223 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~ 223 (395)
-.++.|+|++|+|||||+..+.. .. -..++|++.....+...+.
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~-~~----~~~v~~i~~~~~~~~~~~~ 63 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL-LS----GKKVAYVDTEGGFSPERLV 63 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH-HH----CSEEEEEESSCCCCHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH-Hc----CCcEEEEECCCCCCHHHHH
Confidence 35799999999999999999987 21 2457888877655655543
No 91
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.15 E-value=0.0028 Score=58.48 Aligned_cols=90 Identities=17% Similarity=0.257 Sum_probs=56.8
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhcccC----CCCEEEEEEeCCcCCHHHHHHHHHHHhCCCcc---------c-cchh
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARKAENEK----LFDQVIFVEVSQIQDIRKIQGEFADKLGLTLH---------E-ETES 240 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~----~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~---------~-~~~~ 240 (395)
-.++.|.|++|+|||||+.+++....... .-..++|++....++...+. .++..++.... . .+..
T Consensus 122 G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~-~~~~~~g~~~~~~l~~l~~~~~~~~e 200 (343)
T 1v5w_A 122 MAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLR-DIADRFNVDHDAVLDNVLYARAYTSE 200 (343)
T ss_dssp SEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHcCCCHHHHHhceeEeecCCHH
Confidence 46889999999999999999987643211 12468899988877766654 34455554321 0 0111
Q ss_pred ---hhHHHHHHHHhc--CCeEEEEEeCCCC
Q 047930 241 ---GRARSLCNRLKK--EKRILVILDNIWE 265 (395)
Q Consensus 241 ---~~~~~l~~~l~~--~kr~LlVlDdv~~ 265 (395)
..+..+...+.. .+.-+||+|.+..
T Consensus 201 ~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~ 230 (343)
T 1v5w_A 201 HQMELLDYVAAKFHEEAGIFKLLIIDSIMA 230 (343)
T ss_dssp HHHHHHHHHHHHHHHSCSSEEEEEEETSGG
T ss_pred HHHHHHHHHHHHHHhcCCCccEEEEechHH
Confidence 122334444443 5677999999854
No 92
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.15 E-value=0.0022 Score=59.28 Aligned_cols=84 Identities=20% Similarity=0.296 Sum_probs=52.9
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCccc------cchhhhHHHHHH
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFADKLGLTLHE------ETESGRARSLCN 248 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~------~~~~~~~~~l~~ 248 (395)
-.++.|.|++|+|||||+.++....... -..++|++....++.. .++.++..... ......+..+..
T Consensus 61 G~i~~I~GppGsGKSTLal~la~~~~~~--gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~~ 133 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAIAEAQKM--GGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVDE 133 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHHH
Confidence 3689999999999999999999875432 2347888877766643 45556544321 111122233333
Q ss_pred HHhcCCeEEEEEeCCCC
Q 047930 249 RLKKEKRILVILDNIWE 265 (395)
Q Consensus 249 ~l~~~kr~LlVlDdv~~ 265 (395)
.+...+.-++|+|.+..
T Consensus 134 l~~~~~~dlvVIDSi~~ 150 (356)
T 3hr8_A 134 LVRSGVVDLIVVDSVAA 150 (356)
T ss_dssp HHHTSCCSEEEEECTTT
T ss_pred HhhhcCCCeEEehHhhh
Confidence 33334556899999854
No 93
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.11 E-value=0.0026 Score=58.28 Aligned_cols=90 Identities=19% Similarity=0.338 Sum_probs=57.6
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhcccC----CCCEEEEEEeCCcCCHHHHHHHHHHHhCCCccc---------cchh-
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARKAENEK----LFDQVIFVEVSQIQDIRKIQGEFADKLGLTLHE---------ETES- 240 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~----~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~---------~~~~- 240 (395)
-.++.|.|++|+|||||+.+++....... .-..++|++....++...+. ++++.++..... ....
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~-~~~~~~g~~~~~~~~~l~~~~~~~~~ 185 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIE-NMAKALGLDIDNVMNNIYYIRAINTD 185 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHhCCCHHHHhccEEEEeCCCHH
Confidence 35789999999999999999987643211 02468999988877766654 345566543210 1111
Q ss_pred ---hhHHHHHHHHhc-CCeEEEEEeCCCC
Q 047930 241 ---GRARSLCNRLKK-EKRILVILDNIWE 265 (395)
Q Consensus 241 ---~~~~~l~~~l~~-~kr~LlVlDdv~~ 265 (395)
..+..+...+.. .+.-+||+|.+..
T Consensus 186 ~~~~~l~~l~~~~~~~~~~~lvVIDsl~~ 214 (324)
T 2z43_A 186 HQIAIVDDLQELVSKDPSIKLIVVDSVTS 214 (324)
T ss_dssp HHHHHHHHHHHHHHHCTTEEEEEETTTTH
T ss_pred HHHHHHHHHHHHHHhccCCCEEEEeCcHH
Confidence 123344445544 5678999999853
No 94
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.08 E-value=0.00061 Score=69.60 Aligned_cols=171 Identities=15% Similarity=0.205 Sum_probs=78.4
Q ss_pred cchhchHHHHHHHHHHhc-------------CCCceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHH
Q 047930 154 EAFESRMSTLNDILDALK-------------NPDVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIR 220 (395)
Q Consensus 154 ~~~~gr~~~~~~l~~~l~-------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~ 220 (395)
..+.|-++.++.|.+.+. -...+-+.++|++|+|||.||+.+++..... ++.++. .
T Consensus 477 ~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~-------f~~v~~----~ 545 (806)
T 3cf2_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN-------FISIKG----P 545 (806)
T ss_dssp TTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCE-------EEECCH----H
T ss_pred HHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCc-------eEEecc----c
Confidence 345566666666555432 1124557899999999999999999886532 333321 1
Q ss_pred HHHHHHHHHhCCCccccchhhhHHHHHHHHhcCCeEEEEEeCCCCcc--------c--------cchhccccC--CCCCC
Q 047930 221 KIQGEFADKLGLTLHEETESGRARSLCNRLKKEKRILVILDNIWENL--------D--------FQAVGIPHG--DGHKG 282 (395)
Q Consensus 221 ~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~--------~--------~~~l~~~l~--~~~~g 282 (395)
+ ++.. ....+ ...+..+.+..+...+++|+||+++... . ...+...+. ....+
T Consensus 546 ~----l~s~----~vGes-e~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~ 616 (806)
T 3cf2_A 546 E----LLTM----WFGES-EANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKN 616 (806)
T ss_dssp H----HHTT----TCSSC-HHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSSS
T ss_pred h----hhcc----ccchH-HHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCC
Confidence 1 1111 11111 2345566666665678999999996431 0 111111111 12223
Q ss_pred cEEEEeecchhhh-h---hcCCCcceeecCCCChHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCc
Q 047930 283 SKVLLTARSLDVL-S---RKMDSQQNFSFDVLKEDEAWSLFKKMAGDYIEGSEFKWVAREVAKECAGL 346 (395)
Q Consensus 283 s~iivTtR~~~va-~---~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~Gl 346 (395)
.-||-||...... . +...-...+.+..-+.++-.++|+.++......++.. ...+++.+.|+
T Consensus 617 V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~~~d--l~~la~~t~g~ 682 (806)
T 3cf2_A 617 VFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVD--LEFLAKMTNGF 682 (806)
T ss_dssp EEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CCC---------------
T ss_pred EEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCCCCCC--HHHHHHhCCCC
Confidence 3344455433221 1 1112345777776677777788877765432222221 34566666665
No 95
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.06 E-value=0.0032 Score=57.56 Aligned_cols=90 Identities=16% Similarity=0.236 Sum_probs=57.0
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhcccC---------CC-----CEEEEEEeCCcCCHHHHHHHHHHHhCCCcc-----
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARKAENEK---------LF-----DQVIFVEVSQIQDIRKIQGEFADKLGLTLH----- 235 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~---------~f-----~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~----- 235 (395)
-.++.|.|.+|+|||+|+.+++....... .. ..++|++....++...+.. ++..++....
T Consensus 98 g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g~~~~~~~~~ 176 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAGIDGQTVLDN 176 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHTCCHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcCCCHHHHhcC
Confidence 46899999999999999999987632110 11 4688999888777766553 4555654321
Q ss_pred ----ccchh----hhHHHHHHHHhc-CCeEEEEEeCCCC
Q 047930 236 ----EETES----GRARSLCNRLKK-EKRILVILDNIWE 265 (395)
Q Consensus 236 ----~~~~~----~~~~~l~~~l~~-~kr~LlVlDdv~~ 265 (395)
..... ..+..+...+.+ .+.-+||+|.+..
T Consensus 177 l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~ 215 (322)
T 2i1q_A 177 TFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTS 215 (322)
T ss_dssp EEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSH
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHH
Confidence 00111 123344555554 4566999999853
No 96
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.05 E-value=0.00072 Score=54.39 Aligned_cols=40 Identities=15% Similarity=0.283 Sum_probs=29.5
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCC
Q 047930 174 DVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQ 215 (395)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~ 215 (395)
.-..+.|+|+.|+|||||++.++...... .+ ..+++....
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~-g~-~~~~~~~~~ 74 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEA-GK-NAAYIDAAS 74 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTT-TC-CEEEEETTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhc-CC-cEEEEcHHH
Confidence 45679999999999999999999876532 12 256665543
No 97
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.05 E-value=0.0032 Score=59.25 Aligned_cols=90 Identities=11% Similarity=0.194 Sum_probs=54.8
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhcccC----CCCEEEEEEeCCcCCHHHHHHHHHHHhCCCcc---------ccc---
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARKAENEK----LFDQVIFVEVSQIQDIRKIQGEFADKLGLTLH---------EET--- 238 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~----~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~---------~~~--- 238 (395)
-.++.|+|++|+|||||+.+++-...... .-..++|++....+....+ ..+++.++.... ...
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl-~~~a~~~gl~~~~vleni~~~~~~~~~ 256 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRL-VSIAQRFGLDPDDALNNVAYARAYNAD 256 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHH-HHHHHHcCCChHhHhhcEEEeccCChH
Confidence 35799999999999999998764432110 2345889888776655543 346666654321 000
Q ss_pred -hhhhHHHHHHHHhcCCeEEEEEeCCCC
Q 047930 239 -ESGRARSLCNRLKKEKRILVILDNIWE 265 (395)
Q Consensus 239 -~~~~~~~l~~~l~~~kr~LlVlDdv~~ 265 (395)
....+..+...+...+.-+||+|.+..
T Consensus 257 ~~~~~l~~~~~~l~~~~~~llVIDs~t~ 284 (400)
T 3lda_A 257 HQLRLLDAAAQMMSESRFSLIVVDSVMA 284 (400)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETGGG
T ss_pred HHHHHHHHHHHHHHhcCCceEEecchhh
Confidence 111233344444445678999999743
No 98
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.02 E-value=0.00085 Score=61.02 Aligned_cols=53 Identities=26% Similarity=0.429 Sum_probs=34.9
Q ss_pred hHHHHHHHHHHhcC---CCceEEEEEecCCCcHHHHHHHHHHHhc-ccCCCCEEEEEEe
Q 047930 159 RMSTLNDILDALKN---PDVNMLGIYGMGGIGKTTLAKEVARKAE-NEKLFDQVIFVEV 213 (395)
Q Consensus 159 r~~~~~~l~~~l~~---~~~~vi~I~G~~GiGKTtLa~~v~~~~~-~~~~f~~~~wv~~ 213 (395)
+...+..+.+++.. .....+.|+|+.|+|||+||..+++... .+. + .+.++++
T Consensus 133 ~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g-~-~v~~~~~ 189 (308)
T 2qgz_A 133 RMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKG-V-STTLLHF 189 (308)
T ss_dssp HHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSC-C-CEEEEEH
T ss_pred HHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhcC-C-cEEEEEH
Confidence 33344455555542 1246788999999999999999998765 432 2 3455554
No 99
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.94 E-value=0.0039 Score=57.65 Aligned_cols=84 Identities=21% Similarity=0.345 Sum_probs=52.2
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCccc-----cchhhhHHHHHHH
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFADKLGLTLHE-----ETESGRARSLCNR 249 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~l~~~ 249 (395)
-.++.|.|++|+|||||+.++....... -..++|++....++.. .++.++..... ....+....+...
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~~~~~~--g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~~ 133 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVANAQAA--GGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIADM 133 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHH
Confidence 4579999999999999999998765432 2357899888766543 24555543221 1111122223333
Q ss_pred H-hcCCeEEEEEeCCCC
Q 047930 250 L-KKEKRILVILDNIWE 265 (395)
Q Consensus 250 l-~~~kr~LlVlDdv~~ 265 (395)
+ ...+.-+||+|.+..
T Consensus 134 l~~~~~~~lIVIDsl~~ 150 (349)
T 2zr9_A 134 LVRSGALDIIVIDSVAA 150 (349)
T ss_dssp HHTTTCCSEEEEECGGG
T ss_pred HHhcCCCCEEEEcChHh
Confidence 3 334566999999854
No 100
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.89 E-value=0.0086 Score=51.43 Aligned_cols=90 Identities=21% Similarity=0.254 Sum_probs=51.9
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhccc---C-CCCEEEEEEeCCcCCHHHHHHHHHHHhCCCcc----------ccc--
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARKAENE---K-LFDQVIFVEVSQIQDIRKIQGEFADKLGLTLH----------EET-- 238 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~---~-~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~----------~~~-- 238 (395)
-.+++|+|+.|+|||||++.+....... . .-...+|+.......... ...+.+..+.... ...
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPER-IREIAQNRGLDPDEVLKHIYVARAFNSN 103 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHH-HHHHHHHTTSCHHHHHHTEEEEECCSHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHH-HHHHHHHcCCCHHHHhhcEEEEecCChH
Confidence 3589999999999999999998743221 1 134578887655444333 3334444433211 000
Q ss_pred -hhhhHHHHHHHHh-----cCCeEEEEEeCCCC
Q 047930 239 -ESGRARSLCNRLK-----KEKRILVILDNIWE 265 (395)
Q Consensus 239 -~~~~~~~l~~~l~-----~~kr~LlVlDdv~~ 265 (395)
.......+...+. ..+.-+||||....
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~ 136 (231)
T 4a74_A 104 HQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTS 136 (231)
T ss_dssp HHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSH
T ss_pred HHHHHHHHHHHHHHHhcccCCceeEEEECChHH
Confidence 0111233444443 45788999999854
No 101
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.87 E-value=0.005 Score=57.19 Aligned_cols=84 Identities=21% Similarity=0.281 Sum_probs=51.9
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCccc------cchhhhHHHHHH
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFADKLGLTLHE------ETESGRARSLCN 248 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~------~~~~~~~~~l~~ 248 (395)
-.++.|.|.+|+||||||.++....... -..++|++....++.. .+..++..... .+.......+..
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~~~~~--g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l~~ 146 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQAQKA--GGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIMEL 146 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHHHHC--CCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHHHH
Confidence 3578899999999999999998775432 2358899988766543 24555543221 111122222322
Q ss_pred HHhcCCeEEEEEeCCCC
Q 047930 249 RLKKEKRILVILDNIWE 265 (395)
Q Consensus 249 ~l~~~kr~LlVlDdv~~ 265 (395)
.+...+.-+||+|.+..
T Consensus 147 l~~~~~~~lVVIDsl~~ 163 (366)
T 1xp8_A 147 LVRSGAIDVVVVDSVAA 163 (366)
T ss_dssp HHTTTCCSEEEEECTTT
T ss_pred HHhcCCCCEEEEeChHH
Confidence 22334456999999853
No 102
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.79 E-value=0.0015 Score=55.25 Aligned_cols=42 Identities=24% Similarity=0.342 Sum_probs=32.4
Q ss_pred hHHHHHHHHHHhcC---CCceEEEEEecCCCcHHHHHHHHHHHhc
Q 047930 159 RMSTLNDILDALKN---PDVNMLGIYGMGGIGKTTLAKEVARKAE 200 (395)
Q Consensus 159 r~~~~~~l~~~l~~---~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (395)
|.+.++.+.+.+.. ....+|+|.|+.|+||||+++.+.....
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~ 47 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLR 47 (201)
T ss_dssp HHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 45566677766653 3457999999999999999999987653
No 103
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.76 E-value=0.0057 Score=56.64 Aligned_cols=84 Identities=25% Similarity=0.427 Sum_probs=51.9
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCccc-----cchhhhHHHHHHH
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFADKLGLTLHE-----ETESGRARSLCNR 249 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~l~~~ 249 (395)
-.++.|.|.+|+||||||.++....... -..++|++....++.. .+..++...+. ....+.+..+.+.
T Consensus 63 G~ii~I~G~pGsGKTtLal~la~~~~~~--g~~vlyid~E~s~~~~-----~a~~~g~~~~~l~i~~~~~~e~~~~~~~~ 135 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICDA 135 (356)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEeCCCCccHH-----HHHHcCCChhheeeeCCCCHHHHHHHHHH
Confidence 4588999999999999999998775433 2358899987766643 24555543221 1111222223333
Q ss_pred H-hcCCeEEEEEeCCCC
Q 047930 250 L-KKEKRILVILDNIWE 265 (395)
Q Consensus 250 l-~~~kr~LlVlDdv~~ 265 (395)
+ ...+.-+||+|.+..
T Consensus 136 l~~~~~~~lVVIDsl~~ 152 (356)
T 1u94_A 136 LARSGAVDVIVVDSVAA 152 (356)
T ss_dssp HHHHTCCSEEEEECGGG
T ss_pred HHhccCCCEEEEcCHHH
Confidence 3 224456999999843
No 104
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.62 E-value=0.0022 Score=54.61 Aligned_cols=40 Identities=25% Similarity=0.458 Sum_probs=30.9
Q ss_pred HHHHHHHHHhcC--CCceEEEEEecCCCcHHHHHHHHHHHhc
Q 047930 161 STLNDILDALKN--PDVNMLGIYGMGGIGKTTLAKEVARKAE 200 (395)
Q Consensus 161 ~~~~~l~~~l~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (395)
+.+++|.+.+.. +...+++|+|+.|+|||||++.+.....
T Consensus 6 ~~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 6 ALCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp HHHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 345566666553 4567999999999999999999987654
No 105
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=96.62 E-value=0.0054 Score=58.49 Aligned_cols=87 Identities=21% Similarity=0.386 Sum_probs=51.4
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcC-CHHHHHHHHHHHhCC--------Cccccchhh-----h
Q 047930 177 MLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQ-DIRKIQGEFADKLGL--------TLHEETESG-----R 242 (395)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~--------~~~~~~~~~-----~ 242 (395)
.++|+|.+|+|||||+..+......+. -+.++++.+.+.. ...+++.++...-.. ..++.+... .
T Consensus 153 ~~~i~G~sGvGKTtL~~~l~~~~~~~~-~~i~V~~~iGerttev~el~~~l~~~~~l~~tvvv~~~~~d~pg~r~~~~~~ 231 (473)
T 1sky_E 153 KIGLFGGAGVGKTVLIQELIHNIAQEH-GGISVFAGVGERTREGNDLYHEMKDSGVISKTAMVFGQMNEPPGARMRVALT 231 (473)
T ss_dssp EEEEECCSSSCHHHHHHHHHHHHHHHT-CCCEEEEEESSCHHHHHHHHHHHHHTSGGGGEEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCccHHHHHHHhhhhhcc-CcEEEEeeeccCchHHHHHHHHhhhcCCcceeEEEEEcCCCCHHHHHHHHHH
Confidence 488999999999999999988755432 2345667666543 345555555432100 001111111 1
Q ss_pred HHHHHHHHh--cCCeEEEEEeCCC
Q 047930 243 ARSLCNRLK--KEKRILVILDNIW 264 (395)
Q Consensus 243 ~~~l~~~l~--~~kr~LlVlDdv~ 264 (395)
.-.+.+++. ++++.||++||+.
T Consensus 232 ~ltiAEyFrd~~G~~VLl~~D~it 255 (473)
T 1sky_E 232 GLTMAEYFRDEQGQDGLLFIDNIF 255 (473)
T ss_dssp HHHHHHHHHHHSCCEEEEEEECTH
T ss_pred HHHHHHHHHHhcCCcEEEEeccHH
Confidence 113344443 4899999999993
No 106
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.59 E-value=0.0088 Score=53.88 Aligned_cols=57 Identities=21% Similarity=0.282 Sum_probs=34.6
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCC-cCCHHHHHHHHHHHhC
Q 047930 174 DVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQ-IQDIRKIQGEFADKLG 231 (395)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~ 231 (395)
...++.++|++|+||||++..+......+.- ..+..+.... .....+.+....+..+
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G-~~V~lv~~D~~r~~a~eqL~~~~~~~g 161 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKH-KKIAFITTDTYRIAAVEQLKTYAELLQ 161 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTC-CCEEEEECCCSSTTHHHHHHHHHTTTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcC-CEEEEEecCcccchHHHHHHHHHHhcC
Confidence 4569999999999999999999877653111 1345555432 2233333444444444
No 107
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.58 E-value=0.01 Score=54.84 Aligned_cols=92 Identities=20% Similarity=0.246 Sum_probs=53.2
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhcccCCC----CEEEEEEeCCcCCHHHHHHHHHHHhCCCcc---------c----
Q 047930 174 DVNMLGIYGMGGIGKTTLAKEVARKAENEKLF----DQVIFVEVSQIQDIRKIQGEFADKLGLTLH---------E---- 236 (395)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f----~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~---------~---- 236 (395)
.-.++.|+|+.|+|||||+.+++......... ..++|++....+.... +..+++..+.... .
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~-i~~i~q~~~~~~~~v~~ni~~~~~~~~ 208 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPER-IREIAQNRGLDPDEVLKHIYVARAFNS 208 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHH-HHHHHHTTTCCHHHHGGGEEEEECCSH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHH-HHHHHHHcCCCHHHHhhCEEEEecCCh
Confidence 34689999999999999999998765211001 2458888766554433 3334444433211 0
Q ss_pred cchhhhHHHHHHHHhc-----CCeEEEEEeCCCCc
Q 047930 237 ETESGRARSLCNRLKK-----EKRILVILDNIWEN 266 (395)
Q Consensus 237 ~~~~~~~~~l~~~l~~-----~kr~LlVlDdv~~~ 266 (395)
......+..+...+.. .+.-+||+|.+-..
T Consensus 209 ~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ 243 (349)
T 1pzn_A 209 NHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSH 243 (349)
T ss_dssp HHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTT
T ss_pred HHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHh
Confidence 0011123333333332 46789999998654
No 108
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.58 E-value=0.02 Score=52.11 Aligned_cols=62 Identities=18% Similarity=0.194 Sum_probs=41.8
Q ss_pred HHHHHHHHhcCCCceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHHHH
Q 047930 162 TLNDILDALKNPDVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFADK 229 (395)
Q Consensus 162 ~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 229 (395)
.++.++.-+..+ .++.|.|.+|+||||++.+++.....+. ..++|++.. -+..++...+...
T Consensus 57 ~LD~~lgGl~~G--~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE--~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 57 ELDRMTYGYKRR--NFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLE--MGKKENIKRLIVT 118 (315)
T ss_dssp HHHHHHSSBCTT--CEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESS--SCHHHHHHHHHHH
T ss_pred HHHhhcCCCCCC--cEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECC--CCHHHHHHHHHHH
Confidence 355554333333 4788999999999999999987765432 567888765 3456666665543
No 109
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.48 E-value=0.0017 Score=53.56 Aligned_cols=25 Identities=16% Similarity=0.244 Sum_probs=22.4
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhc
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARKAE 200 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (395)
.+|.|+|++|+||||+++.+.....
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5789999999999999999998754
No 110
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.45 E-value=0.016 Score=52.70 Aligned_cols=27 Identities=22% Similarity=0.313 Sum_probs=23.5
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhc
Q 047930 174 DVNMLGIYGMGGIGKTTLAKEVARKAE 200 (395)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (395)
.+.+|+|.|+.|+|||||++.+.....
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 456999999999999999999887654
No 111
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.42 E-value=0.0031 Score=58.38 Aligned_cols=52 Identities=15% Similarity=0.082 Sum_probs=33.4
Q ss_pred HHHHHhcC-CCceEEEEEecCCCcHHHHHHHHHHHhcccC-CCCEEEEEEeCCcC
Q 047930 165 DILDALKN-PDVNMLGIYGMGGIGKTTLAKEVARKAENEK-LFDQVIFVEVSQIQ 217 (395)
Q Consensus 165 ~l~~~l~~-~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~-~f~~~~wv~~s~~~ 217 (395)
+.++.+.. ..-..++|+|.+|+|||||++.+.+...... .+. ++++-+.+..
T Consensus 163 raID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~-~I~~lIGER~ 216 (422)
T 3ice_A 163 RVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCV-LMVLLIDERP 216 (422)
T ss_dssp HHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSE-EEEEEESSCH
T ss_pred eeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHhhcCCCee-EEEEEecCCh
Confidence 34444431 2234689999999999999999887653321 233 4467776543
No 112
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.42 E-value=0.009 Score=52.02 Aligned_cols=22 Identities=32% Similarity=0.368 Sum_probs=20.2
Q ss_pred eEEEEEecCCCcHHHHHHHHHH
Q 047930 176 NMLGIYGMGGIGKTTLAKEVAR 197 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~ 197 (395)
.+++|+|+.|+|||||++.+..
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHH
Confidence 5799999999999999999884
No 113
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.40 E-value=0.002 Score=52.72 Aligned_cols=25 Identities=16% Similarity=0.224 Sum_probs=22.1
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhc
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARKAE 200 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (395)
.+|.|.|+.|+||||+++.+.....
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4789999999999999999987754
No 114
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=96.39 E-value=0.0016 Score=60.05 Aligned_cols=50 Identities=18% Similarity=0.248 Sum_probs=36.0
Q ss_pred ccccchhchHHHHHHHHHHhcCCCceEEEEEecCCCcHHHHHHHHHHHhc
Q 047930 151 KDYEAFESRMSTLNDILDALKNPDVNMLGIYGMGGIGKTTLAKEVARKAE 200 (395)
Q Consensus 151 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (395)
.....++|.+..+..+...+..+....+.|+|++|+|||+||+.+.+...
T Consensus 21 ~~f~~i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 21 FPFSAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred CCchhccChHHHHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHHHhCc
Confidence 34556888877665544444333344588999999999999999998754
No 115
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.35 E-value=0.0019 Score=52.92 Aligned_cols=20 Identities=40% Similarity=0.581 Sum_probs=18.9
Q ss_pred eEEEEEecCCCcHHHHHHHH
Q 047930 176 NMLGIYGMGGIGKTTLAKEV 195 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v 195 (395)
.+|.|.|++|+||||+++.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47999999999999999999
No 116
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.32 E-value=0.00041 Score=58.00 Aligned_cols=109 Identities=17% Similarity=0.046 Sum_probs=51.4
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCccccchhhhHHHHHHHHhcCCe
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFADKLGLTLHEETESGRARSLCNRLKKEKR 255 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr 255 (395)
.++.|+|+.|+||||++..+..+...+. . .++++....+. ..-...+...++....... ......+.+.+. ++.
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~g-~-~v~~~~~~~d~--r~~~~~i~s~~g~~~~~~~-~~~~~~~~~~~~-~~~ 77 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLGK-K-KVAVFKPKIDS--RYHSTMIVSHSGNGVEAHV-IERPEEMRKYIE-EDT 77 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTT-C-EEEEEEEC-------CCCEECC----CEECEE-ESSGGGGGGGCC-TTE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCC-C-eEEEEeecccc--ccCcccEEecCCCceeeEE-ECCHHHHHHHhc-CCC
Confidence 4788999999999999977776543322 2 23333322110 0000001111111110000 001112222222 345
Q ss_pred EEEEEeCCCCc-cccchhccccCCCCCCcEEEEeecch
Q 047930 256 ILVILDNIWEN-LDFQAVGIPHGDGHKGSKVLLTARSL 292 (395)
Q Consensus 256 ~LlVlDdv~~~-~~~~~l~~~l~~~~~gs~iivTtR~~ 292 (395)
-+|++|++... ..|......+.+. |..||+|.+..
T Consensus 78 dvviIDE~Q~~~~~~~~~l~~l~~~--~~~Vi~~Gl~~ 113 (184)
T 2orw_A 78 RGVFIDEVQFFNPSLFEVVKDLLDR--GIDVFCAGLDL 113 (184)
T ss_dssp EEEEECCGGGSCTTHHHHHHHHHHT--TCEEEEEEESB
T ss_pred CEEEEECcccCCHHHHHHHHHHHHC--CCCEEEEeecc
Confidence 69999999654 3454433323222 77899988743
No 117
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.29 E-value=0.0024 Score=52.96 Aligned_cols=24 Identities=21% Similarity=0.459 Sum_probs=21.7
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHh
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
.+++|+|++|+|||||++.+....
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 579999999999999999998764
No 118
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.28 E-value=0.0026 Score=52.40 Aligned_cols=22 Identities=32% Similarity=0.452 Sum_probs=20.5
Q ss_pred eEEEEEecCCCcHHHHHHHHHH
Q 047930 176 NMLGIYGMGGIGKTTLAKEVAR 197 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~ 197 (395)
.+|.|.|++|+||||+++.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5789999999999999999987
No 119
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.27 E-value=0.0015 Score=56.30 Aligned_cols=109 Identities=13% Similarity=0.029 Sum_probs=59.0
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCccccchhhhHHHHHHHHhc-
Q 047930 174 DVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFADKLGLTLHEETESGRARSLCNRLKK- 252 (395)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~- 252 (395)
.-.++.|+|..|+||||++..+..+...+. . .++.+...... . ....+++.++........ .....+.+.+..
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~g-~-kVli~~~~~d~--r-~~~~i~srlG~~~~~~~~-~~~~~i~~~i~~~ 84 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEYAD-V-KYLVFKPKIDT--R-SIRNIQSRTGTSLPSVEV-ESAPEILNYIMSN 84 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHHTT-C-CEEEEEECCCG--G-GCSSCCCCCCCSSCCEEE-SSTHHHHHHHHST
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHhcC-C-EEEEEEeccCc--h-HHHHHHHhcCCCcccccc-CCHHHHHHHHHHH
Confidence 346888999999999999999888765432 2 23444333221 1 112344445443222111 112334444432
Q ss_pred ---CCeEEEEEeCCCCc--cccchhccccCCCCCCcEEEEeecc
Q 047930 253 ---EKRILVILDNIWEN--LDFQAVGIPHGDGHKGSKVLLTARS 291 (395)
Q Consensus 253 ---~kr~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtR~ 291 (395)
++.-+||+|.+... +..+.+ ..+.+ .|..||+|.+.
T Consensus 85 ~~~~~~dvViIDEaQ~l~~~~ve~l-~~L~~--~gi~Vil~Gl~ 125 (223)
T 2b8t_A 85 SFNDETKVIGIDEVQFFDDRICEVA-NILAE--NGFVVIISGLD 125 (223)
T ss_dssp TSCTTCCEEEECSGGGSCTHHHHHH-HHHHH--TTCEEEEECCS
T ss_pred hhCCCCCEEEEecCccCcHHHHHHH-HHHHh--CCCeEEEEecc
Confidence 23449999999643 222222 22212 26789999883
No 120
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.25 E-value=0.0029 Score=52.77 Aligned_cols=24 Identities=38% Similarity=0.481 Sum_probs=21.5
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHH
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARK 198 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~ 198 (395)
..+++|+|+.|+|||||++.+...
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 468999999999999999999865
No 121
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.25 E-value=0.0029 Score=53.37 Aligned_cols=26 Identities=42% Similarity=0.482 Sum_probs=23.0
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhc
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARKAE 200 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (395)
..+|.|+|+.|+||||+++.+.....
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 45899999999999999999998763
No 122
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.25 E-value=0.018 Score=49.91 Aligned_cols=46 Identities=17% Similarity=0.242 Sum_probs=31.7
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHH
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGE 225 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 225 (395)
.++.|.|++|+|||||+.+++...... -..++|++.... ..++...
T Consensus 24 ~~~~i~G~~GsGKTtl~~~~~~~~~~~--~~~v~~~~~e~~--~~~~~~~ 69 (247)
T 2dr3_A 24 NVVLLSGGPGTGKTIFSQQFLWNGLKM--GEPGIYVALEEH--PVQVRQN 69 (247)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHHHT--TCCEEEEESSSC--HHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEEccCC--HHHHHHH
Confidence 578999999999999999887664322 234777776543 4444433
No 123
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.21 E-value=0.0024 Score=52.34 Aligned_cols=25 Identities=24% Similarity=0.432 Sum_probs=22.0
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhc
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARKAE 200 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (395)
.+|+|+|+.|+||||+++.+.....
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 4699999999999999999987643
No 124
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.20 E-value=0.003 Score=52.44 Aligned_cols=26 Identities=23% Similarity=0.478 Sum_probs=22.7
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhc
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARKAE 200 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (395)
.+.|.|+|+.|+||||+++.+.....
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45789999999999999999998753
No 125
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=96.20 E-value=0.023 Score=54.30 Aligned_cols=88 Identities=19% Similarity=0.321 Sum_probs=57.4
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcC-CHHHHHHHHHHHhCCC-------cc----ccchh---
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQ-DIRKIQGEFADKLGLT-------LH----EETES--- 240 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~-------~~----~~~~~--- 240 (395)
.-++|.|.+|+|||+|+..+.++... .+-+.++++-+.... ...++++++...-... .. ...+.
T Consensus 166 qr~gIfgg~GvGKT~L~~~l~~~~a~-~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~~~rtvvV~~t~d~p~~ 244 (498)
T 1fx0_B 166 GKIGLFGGAGVGKTVLIMELINNIAK-AHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNEPPG 244 (498)
T ss_dssp CCEEEEECSSSSHHHHHHHHHHHTTT-TCSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTTCCCCEEEEEECTTSCHH
T ss_pred CeEEeecCCCCCchHHHHHHHHHHHh-hCCCEEEEEEcccCcHHHHHHHHhhhcccccccccccccceEEEEeCCCCCHH
Confidence 34889999999999999999987543 235678888887655 4567777776542221 00 00011
Q ss_pred ------hhHHHHHHHHh--cCCeEEEEEeCCC
Q 047930 241 ------GRARSLCNRLK--KEKRILVILDNIW 264 (395)
Q Consensus 241 ------~~~~~l~~~l~--~~kr~LlVlDdv~ 264 (395)
...-.+.+++. +++..||++||+.
T Consensus 245 ~R~~~~~~altiAEyfrd~~G~dVLl~~Dsit 276 (498)
T 1fx0_B 245 ARMRVGLTALTMAEYFRDVNEQDVLLFIDNIF 276 (498)
T ss_dssp HHTTHHHHHHHTHHHHTTTSCCEEEEEEECSH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcEEEEeccHH
Confidence 11234455554 3899999999984
No 126
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.18 E-value=0.0034 Score=52.97 Aligned_cols=28 Identities=25% Similarity=0.317 Sum_probs=24.6
Q ss_pred CCceEEEEEecCCCcHHHHHHHHHHHhc
Q 047930 173 PDVNMLGIYGMGGIGKTTLAKEVARKAE 200 (395)
Q Consensus 173 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (395)
....+|.|+|++|+||||+++.+.....
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4567899999999999999999988764
No 127
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.15 E-value=0.004 Score=51.97 Aligned_cols=25 Identities=28% Similarity=0.360 Sum_probs=22.5
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHh
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
..+|.|.|+.|+||||+++.+....
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999998765
No 128
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.14 E-value=0.0052 Score=52.74 Aligned_cols=37 Identities=22% Similarity=0.266 Sum_probs=28.5
Q ss_pred HHHHHHhcCCCceEEEEEecCCCcHHHHHHHHHHHhc
Q 047930 164 NDILDALKNPDVNMLGIYGMGGIGKTTLAKEVARKAE 200 (395)
Q Consensus 164 ~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (395)
+.+...+.......|+|+|.+|+|||||+..+.....
T Consensus 27 ~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 27 DKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp HHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 3344444445678899999999999999999998754
No 129
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.11 E-value=0.0038 Score=52.06 Aligned_cols=25 Identities=24% Similarity=0.412 Sum_probs=22.5
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhc
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARKAE 200 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (395)
.+|.|.|+.|+||||+++.+.+...
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4689999999999999999998765
No 130
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.11 E-value=0.037 Score=52.50 Aligned_cols=28 Identities=32% Similarity=0.442 Sum_probs=24.4
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhcc
Q 047930 174 DVNMLGIYGMGGIGKTTLAKEVARKAEN 201 (395)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 201 (395)
.+.+|.++|.+|+||||++..++.....
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~ 126 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQK 126 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHH
Confidence 4689999999999999999999876654
No 131
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.07 E-value=0.0032 Score=53.22 Aligned_cols=25 Identities=20% Similarity=0.472 Sum_probs=22.5
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHh
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
..+|.|.|+.|+||||+++.+....
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998875
No 132
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.04 E-value=0.0043 Score=52.78 Aligned_cols=27 Identities=26% Similarity=0.405 Sum_probs=23.3
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhc
Q 047930 174 DVNMLGIYGMGGIGKTTLAKEVARKAE 200 (395)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (395)
...+|+|+|+.|+|||||++.+.....
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 346899999999999999999987653
No 133
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.03 E-value=0.0036 Score=52.24 Aligned_cols=25 Identities=32% Similarity=0.381 Sum_probs=21.5
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhc
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARKAE 200 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (395)
+.|.|+|++|+|||||++.+.....
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCC
Confidence 4588999999999999999987643
No 134
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.02 E-value=0.0039 Score=51.57 Aligned_cols=26 Identities=42% Similarity=0.586 Sum_probs=22.6
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhc
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARKAE 200 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (395)
.++|.|+|++|+||||+++.+.....
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~ 36 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSG 36 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhC
Confidence 45788999999999999999987753
No 135
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=96.02 E-value=0.0039 Score=56.73 Aligned_cols=40 Identities=23% Similarity=0.434 Sum_probs=29.4
Q ss_pred CCceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeC
Q 047930 173 PDVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVS 214 (395)
Q Consensus 173 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s 214 (395)
++.+||+|.|-||+||||.+.++.--.....+ .+.-+.+.
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA~~Gk--kVllID~D 85 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILGK--RVLQIGCD 85 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTTC--CEEEEEES
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHHHCCC--eEEEEecC
Confidence 46799999999999999999998876554321 25555554
No 136
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.00 E-value=0.0043 Score=51.66 Aligned_cols=25 Identities=20% Similarity=0.360 Sum_probs=22.5
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhc
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARKAE 200 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (395)
.+|.|.|+.|+||||+++.+.....
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5799999999999999999998654
No 137
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.00 E-value=0.0039 Score=52.80 Aligned_cols=25 Identities=36% Similarity=0.495 Sum_probs=22.4
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHh
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
..+|.|+|++|+|||||++.+....
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhC
Confidence 4578999999999999999998765
No 138
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.99 E-value=0.0041 Score=52.52 Aligned_cols=24 Identities=29% Similarity=0.474 Sum_probs=21.6
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHh
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
.+++|+|+.|+|||||++.+....
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 579999999999999999998763
No 139
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.99 E-value=0.0047 Score=52.14 Aligned_cols=27 Identities=33% Similarity=0.491 Sum_probs=23.1
Q ss_pred CCceEEEEEecCCCcHHHHHHHHHHHh
Q 047930 173 PDVNMLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 173 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
....+|+|+|+.|+|||||++.+....
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 345689999999999999999998765
No 140
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=95.98 E-value=0.041 Score=52.36 Aligned_cols=88 Identities=17% Similarity=0.317 Sum_probs=56.4
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcC-CHHHHHHHHHHHhCCC------cc----ccchh----
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQ-DIRKIQGEFADKLGLT------LH----EETES---- 240 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~------~~----~~~~~---- 240 (395)
.-++|.|..|+|||+|+..+.+.... .+-+.++++-+.... ...++++++...-... .. ...+.
T Consensus 154 Qr~~Ifgg~G~GKT~L~~~i~~~~~~-~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~~~~rtvvV~~t~d~p~~~ 232 (482)
T 2ck3_D 154 GKIGLFGGAGVGKTVLIMELINNVAK-AHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPPGA 232 (482)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTTT-TCSSEEEEEEESCCHHHHHHHHHHHHHHTSSCSSSSCCCEEEEEECTTSCHHH
T ss_pred CeeeeecCCCCChHHHHHHHHHhhHh-hCCCEEEEEECCCcchHHHHHHHHhhhccccccccCCceEEEEEECCCCCHHH
Confidence 34889999999999999999987532 234667888887654 4566777776642221 00 00111
Q ss_pred -----hhHHHHHHHHh--cCCeEEEEEeCCC
Q 047930 241 -----GRARSLCNRLK--KEKRILVILDNIW 264 (395)
Q Consensus 241 -----~~~~~l~~~l~--~~kr~LlVlDdv~ 264 (395)
...-.+.+++. +++..||++||+.
T Consensus 233 r~~~~~~a~tiAEyfrd~~G~dVLll~Dsit 263 (482)
T 2ck3_D 233 RARVALTGLTVAEYFRDQEGQDVLLFIDNIF 263 (482)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSCEEEEEECTH
T ss_pred HHHHHHHHHHHHHHHHHhcCCcEEEEeccHH
Confidence 11223444443 4899999999984
No 141
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.98 E-value=0.029 Score=53.12 Aligned_cols=28 Identities=29% Similarity=0.258 Sum_probs=24.3
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhcc
Q 047930 174 DVNMLGIYGMGGIGKTTLAKEVARKAEN 201 (395)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 201 (395)
...+|.++|++|+||||++..++.....
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~ 123 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKK 123 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4689999999999999999999876654
No 142
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.97 E-value=0.0057 Score=50.84 Aligned_cols=28 Identities=29% Similarity=0.369 Sum_probs=24.3
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhcc
Q 047930 174 DVNMLGIYGMGGIGKTTLAKEVARKAEN 201 (395)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 201 (395)
...+|.|.|+.|+||||+++.+......
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 4578999999999999999999987653
No 143
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.97 E-value=0.0045 Score=54.49 Aligned_cols=25 Identities=32% Similarity=0.397 Sum_probs=22.1
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhc
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARKAE 200 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (395)
.+|.|+|+.|+||||||+.+.....
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 4789999999999999999987653
No 144
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=95.95 E-value=0.0055 Score=52.38 Aligned_cols=38 Identities=24% Similarity=0.302 Sum_probs=28.8
Q ss_pred HHHHHHHhcCCCceEEEEEecCCCcHHHHHHHHHHHhc
Q 047930 163 LNDILDALKNPDVNMLGIYGMGGIGKTTLAKEVARKAE 200 (395)
Q Consensus 163 ~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (395)
.+.+...+.....++|+|+|.+|+|||||+..+.....
T Consensus 18 ~~~~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 18 AEKNREALRESGTVAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp HHHHHHHHHHHTCEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred HHHHHHhhcccCceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 33444444345678999999999999999999988753
No 145
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.95 E-value=0.0037 Score=52.15 Aligned_cols=25 Identities=32% Similarity=0.381 Sum_probs=22.1
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhc
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARKAE 200 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (395)
++++|+|+.|+|||||++.+.....
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 5789999999999999999987654
No 146
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.94 E-value=0.005 Score=50.59 Aligned_cols=25 Identities=32% Similarity=0.546 Sum_probs=22.1
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHh
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
..+|.|+|+.|+||||+++.+....
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998764
No 147
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.93 E-value=0.0096 Score=53.44 Aligned_cols=56 Identities=11% Similarity=0.023 Sum_probs=35.0
Q ss_pred CCCceEEEEEecCCCcHHHHHHHHHHHhcccC-CCCEEEEEEeCCcCCHHHHHHHHH
Q 047930 172 NPDVNMLGIYGMGGIGKTTLAKEVARKAENEK-LFDQVIFVEVSQIQDIRKIQGEFA 227 (395)
Q Consensus 172 ~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~-~f~~~~wv~~s~~~~~~~~~~~i~ 227 (395)
.....+|+|+|..|+|||||++.+........ .......|+....+-.......+.
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~~~~~~~~~l~ 84 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHEDQLKLN 84 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBCCHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccccCChHHHHHHh
Confidence 34567999999999999999999887654311 022344445544333344444443
No 148
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.91 E-value=0.01 Score=49.61 Aligned_cols=116 Identities=18% Similarity=0.111 Sum_probs=60.0
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCC---cCCHHHHHHHHHH---HhC--CCccccc-------h
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQ---IQDIRKIQGEFAD---KLG--LTLHEET-------E 239 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~---~~~~~~~~~~i~~---~l~--~~~~~~~-------~ 239 (395)
...|.|++-.|.||||+|--+.-..-... + .+.++..-. ......++..+.- ..+ ..+.... .
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~G-~-rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a 105 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVGHG-K-NVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAAC 105 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHHTT-C-CEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHCC-C-eEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHH
Confidence 35677777778999999998887765432 2 344554332 2233334333310 000 1111110 0
Q ss_pred hhhHHHHHHHHhcCCeEEEEEeCCCCc-----cccchhccccCCCCCCcEEEEeecch
Q 047930 240 SGRARSLCNRLKKEKRILVILDNIWEN-----LDFQAVGIPHGDGHKGSKVLLTARSL 292 (395)
Q Consensus 240 ~~~~~~l~~~l~~~kr~LlVlDdv~~~-----~~~~~l~~~l~~~~~gs~iivTtR~~ 292 (395)
........+.+..++-=|||||++-.. ...+.+...+.......-||+|+|..
T Consensus 106 ~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 106 MAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC
T ss_pred HHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCC
Confidence 112334444444344449999998432 23333433333344566799999984
No 149
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.90 E-value=0.0058 Score=51.44 Aligned_cols=26 Identities=31% Similarity=0.337 Sum_probs=23.2
Q ss_pred CCceEEEEEecCCCcHHHHHHHHHHH
Q 047930 173 PDVNMLGIYGMGGIGKTTLAKEVARK 198 (395)
Q Consensus 173 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 198 (395)
++..+|+|.|+.|+||||+++.+...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 45678999999999999999999875
No 150
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.90 E-value=0.0054 Score=52.08 Aligned_cols=27 Identities=41% Similarity=0.480 Sum_probs=23.2
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhc
Q 047930 174 DVNMLGIYGMGGIGKTTLAKEVARKAE 200 (395)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (395)
...+|+|+|+.|+|||||++.+.....
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 446899999999999999999987643
No 151
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.90 E-value=0.0044 Score=51.00 Aligned_cols=24 Identities=33% Similarity=0.541 Sum_probs=21.5
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhc
Q 047930 177 MLGIYGMGGIGKTTLAKEVARKAE 200 (395)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~~ 200 (395)
.|.|.|++|+||||+++.+.....
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 588999999999999999987654
No 152
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=95.89 E-value=0.0038 Score=60.48 Aligned_cols=44 Identities=18% Similarity=0.179 Sum_probs=35.4
Q ss_pred chhchHHHHHHHHHHhcCCCceEEEEEecCCCcHHHHHHHHHHHhc
Q 047930 155 AFESRMSTLNDILDALKNPDVNMLGIYGMGGIGKTTLAKEVARKAE 200 (395)
Q Consensus 155 ~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (395)
.++|++..++.+...+..+. .+.++|++|+|||+||+.+++...
T Consensus 23 ~ivGq~~~i~~l~~al~~~~--~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALSGE--SVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp TCSSCHHHHHHHHHHHHHTC--EEEEECCSSSSHHHHHHHGGGGBS
T ss_pred hhHHHHHHHHHHHHHHhcCC--eeEeecCchHHHHHHHHHHHHHHh
Confidence 46788888887777665443 578999999999999999998764
No 153
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.89 E-value=0.019 Score=64.04 Aligned_cols=84 Identities=23% Similarity=0.273 Sum_probs=54.9
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCccc------cchhhhHHHHH
Q 047930 174 DVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFADKLGLTLHE------ETESGRARSLC 247 (395)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~------~~~~~~~~~l~ 247 (395)
..+++.|+|++|+|||+||.++......+ =..++|+++...++... ++.++.+.+. .+.......+.
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~~~--G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~~ 1498 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 1498 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTT--TCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHHH
Confidence 45689999999999999999998875532 23478888877766554 4555532211 11222333334
Q ss_pred HHHhcCCeEEEEEeCCC
Q 047930 248 NRLKKEKRILVILDNIW 264 (395)
Q Consensus 248 ~~l~~~kr~LlVlDdv~ 264 (395)
+...+.+.-+||+|.+.
T Consensus 1499 ~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1499 ALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHHHTCCSEEEESCGG
T ss_pred HHHhcCCCCEEEEcChh
Confidence 34444677899999995
No 154
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.89 E-value=0.041 Score=52.25 Aligned_cols=29 Identities=21% Similarity=0.307 Sum_probs=24.8
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhccc
Q 047930 174 DVNMLGIYGMGGIGKTTLAKEVARKAENE 202 (395)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 202 (395)
..++|.++|.+|+||||++..++.....+
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~ 127 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREK 127 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 46799999999999999999998776543
No 155
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=95.88 E-value=0.0051 Score=50.97 Aligned_cols=24 Identities=38% Similarity=0.547 Sum_probs=21.3
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhc
Q 047930 177 MLGIYGMGGIGKTTLAKEVARKAE 200 (395)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~~ 200 (395)
.++|+|+.|+|||||++.+.....
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 578999999999999999987654
No 156
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.87 E-value=0.0052 Score=51.75 Aligned_cols=24 Identities=33% Similarity=0.674 Sum_probs=21.8
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhc
Q 047930 177 MLGIYGMGGIGKTTLAKEVARKAE 200 (395)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~~ 200 (395)
.|+|.|+.|+||||+++.+.....
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 689999999999999999998754
No 157
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.87 E-value=0.0057 Score=51.67 Aligned_cols=25 Identities=24% Similarity=0.391 Sum_probs=22.1
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHh
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
..+++|+|+.|+||||+++.+....
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3589999999999999999998754
No 158
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.87 E-value=0.0052 Score=51.21 Aligned_cols=22 Identities=36% Similarity=0.543 Sum_probs=20.1
Q ss_pred eEEEEEecCCCcHHHHHHHHHH
Q 047930 176 NMLGIYGMGGIGKTTLAKEVAR 197 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~ 197 (395)
.+++|+|+.|+|||||++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4789999999999999999975
No 159
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.86 E-value=0.0061 Score=50.69 Aligned_cols=25 Identities=32% Similarity=0.367 Sum_probs=22.3
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHH
Q 047930 174 DVNMLGIYGMGGIGKTTLAKEVARK 198 (395)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~ 198 (395)
....|.|+|+.|+||||+++.+...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3467999999999999999999876
No 160
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.86 E-value=0.0062 Score=50.92 Aligned_cols=26 Identities=27% Similarity=0.381 Sum_probs=22.8
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhc
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARKAE 200 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (395)
..+|.|.|+.|+||||+++.+.+...
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l~ 34 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKYG 34 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999987653
No 161
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.86 E-value=0.0065 Score=51.25 Aligned_cols=26 Identities=23% Similarity=0.388 Sum_probs=23.0
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHh
Q 047930 174 DVNMLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
+..+|.|.|+.|+||||+++.+.+..
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45689999999999999999998764
No 162
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=95.85 E-value=0.019 Score=52.04 Aligned_cols=43 Identities=21% Similarity=0.244 Sum_probs=29.5
Q ss_pred CCceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCC
Q 047930 173 PDVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQ 215 (395)
Q Consensus 173 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~ 215 (395)
....+++|.|+.|+|||||++.+..-......-..+.++....
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~ 130 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDG 130 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGG
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecCc
Confidence 4457999999999999999999987654311002355555443
No 163
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=95.85 E-value=0.0089 Score=55.56 Aligned_cols=45 Identities=22% Similarity=0.188 Sum_probs=34.1
Q ss_pred hhchHHHHHHHHHHhc-------------C--CCceEEEEEecCCCcHHHHHHHHHHHhc
Q 047930 156 FESRMSTLNDILDALK-------------N--PDVNMLGIYGMGGIGKTTLAKEVARKAE 200 (395)
Q Consensus 156 ~~gr~~~~~~l~~~l~-------------~--~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (395)
++|.+..++.+...+. . .....+.++|++|+|||++|+.+++...
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLD 76 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 4677777777666651 1 1345688999999999999999998763
No 164
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.85 E-value=0.0083 Score=53.81 Aligned_cols=26 Identities=23% Similarity=0.309 Sum_probs=23.0
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHh
Q 047930 174 DVNMLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
...+|.|.|++|+||||+++.+....
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998764
No 165
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.82 E-value=0.0046 Score=52.18 Aligned_cols=24 Identities=29% Similarity=0.419 Sum_probs=21.3
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHh
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
+.++|+|+.|+|||||++.+....
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 578999999999999999998754
No 166
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.82 E-value=0.006 Score=50.87 Aligned_cols=25 Identities=24% Similarity=0.248 Sum_probs=22.1
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHh
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
..+|.|.|+.|+||||+++.+....
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999998764
No 167
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.80 E-value=0.0067 Score=49.62 Aligned_cols=28 Identities=29% Similarity=0.322 Sum_probs=23.9
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhcc
Q 047930 174 DVNMLGIYGMGGIGKTTLAKEVARKAEN 201 (395)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 201 (395)
..+++.|+|..|+|||||+..+......
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~~ 30 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAAVR 30 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhhHh
Confidence 3578999999999999999999987653
No 168
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.79 E-value=0.0061 Score=51.26 Aligned_cols=26 Identities=15% Similarity=0.417 Sum_probs=22.8
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHh
Q 047930 174 DVNMLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
..++|+|+|++|+|||||++.+....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 45689999999999999999998764
No 169
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.79 E-value=0.0061 Score=49.72 Aligned_cols=27 Identities=30% Similarity=0.466 Sum_probs=22.8
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhc
Q 047930 174 DVNMLGIYGMGGIGKTTLAKEVARKAE 200 (395)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (395)
...+|.|.|+.|+||||+++.+.....
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHhC
Confidence 356899999999999999999998754
No 170
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.75 E-value=0.0052 Score=50.96 Aligned_cols=25 Identities=24% Similarity=0.430 Sum_probs=22.0
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhc
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARKAE 200 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (395)
++|.|.|+.|+||||+|+.+.....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 4689999999999999999988654
No 171
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.73 E-value=0.0064 Score=51.35 Aligned_cols=22 Identities=32% Similarity=0.489 Sum_probs=20.3
Q ss_pred eEEEEEecCCCcHHHHHHHHHH
Q 047930 176 NMLGIYGMGGIGKTTLAKEVAR 197 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~ 197 (395)
.+|+|+|+.|+||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3689999999999999999987
No 172
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.72 E-value=0.0064 Score=52.24 Aligned_cols=24 Identities=38% Similarity=0.497 Sum_probs=21.6
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHh
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
.+|+|+|+.|+||||+++.+....
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999998754
No 173
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.71 E-value=0.0071 Score=50.70 Aligned_cols=26 Identities=27% Similarity=0.328 Sum_probs=22.8
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhc
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARKAE 200 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (395)
..+|.|.|+.|+||||+++.+.....
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35899999999999999999988653
No 174
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.69 E-value=0.0075 Score=51.07 Aligned_cols=26 Identities=23% Similarity=0.316 Sum_probs=23.2
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhcc
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARKAEN 201 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~ 201 (395)
.+|.|.|+.|+||||+++.+......
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 57999999999999999999987653
No 175
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.68 E-value=0.0073 Score=53.30 Aligned_cols=25 Identities=28% Similarity=0.600 Sum_probs=22.4
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHh
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
..+|.|.|++|+||||+|+.+....
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999864
No 176
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.68 E-value=0.0072 Score=50.09 Aligned_cols=24 Identities=29% Similarity=0.347 Sum_probs=21.6
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHh
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
..|.|.|+.|+||||+++.+.+..
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 578999999999999999998764
No 177
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.68 E-value=0.052 Score=49.64 Aligned_cols=61 Identities=15% Similarity=0.156 Sum_probs=40.5
Q ss_pred HHHHHHHHhcCCCceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHHH
Q 047930 162 TLNDILDALKNPDVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFAD 228 (395)
Q Consensus 162 ~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 228 (395)
.++.+..-+..+ .++.|.|.+|+||||++.+++...... =..++|++.. -+..++...++.
T Consensus 35 ~LD~~~gGl~~G--~LiiIaG~pG~GKTt~al~ia~~~a~~--g~~Vl~fSlE--ms~~ql~~Rlls 95 (338)
T 4a1f_A 35 QLDNYTSGFNKG--SLVIIGARPSMGKTSLMMNMVLSALND--DRGVAVFSLE--MSAEQLALRALS 95 (338)
T ss_dssp HHHHHHCSBCTT--CEEEEEECTTSCHHHHHHHHHHHHHHT--TCEEEEEESS--SCHHHHHHHHHH
T ss_pred HHHHHhcCCCCC--cEEEEEeCCCCCHHHHHHHHHHHHHHc--CCeEEEEeCC--CCHHHHHHHHHH
Confidence 355555433333 468899999999999999998876542 2356777653 345566555543
No 178
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.67 E-value=0.0083 Score=50.53 Aligned_cols=27 Identities=30% Similarity=0.255 Sum_probs=23.2
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhc
Q 047930 174 DVNMLGIYGMGGIGKTTLAKEVARKAE 200 (395)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (395)
...+|.|.|+.|+||||+++.+.....
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 345899999999999999999988653
No 179
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.67 E-value=0.0061 Score=49.86 Aligned_cols=25 Identities=32% Similarity=0.444 Sum_probs=22.0
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhc
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARKAE 200 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (395)
.+|.|.|+.|+||||+++.+.....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999988653
No 180
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.65 E-value=0.0057 Score=50.23 Aligned_cols=22 Identities=32% Similarity=0.528 Sum_probs=19.0
Q ss_pred ceEEEEEecCCCcHHHHHHHHH
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVA 196 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~ 196 (395)
-.+++|+|+.|+|||||++.++
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHS
T ss_pred CEEEEEECCCCCCHHHHHHHHc
Confidence 3589999999999999999643
No 181
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=95.65 E-value=0.0075 Score=52.69 Aligned_cols=26 Identities=27% Similarity=0.310 Sum_probs=23.0
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhc
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARKAE 200 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (395)
..+|+|+|+.|+|||||++.+.+...
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg 52 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFG 52 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 56899999999999999999997653
No 182
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.64 E-value=0.0076 Score=51.05 Aligned_cols=24 Identities=42% Similarity=0.650 Sum_probs=21.6
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHH
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARK 198 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~ 198 (395)
..+|+|+|+.|+||||+++.+...
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999864
No 183
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.63 E-value=0.039 Score=49.81 Aligned_cols=38 Identities=24% Similarity=0.357 Sum_probs=28.2
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEe
Q 047930 174 DVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEV 213 (395)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~ 213 (395)
...+|.|+|++|+||||++..++.....+. ..+.++..
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g--~kV~lv~~ 140 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEG--KSVVLAAA 140 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTT--CCEEEEEE
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhcC--CEEEEEcc
Confidence 457899999999999999999987765431 22445544
No 184
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.62 E-value=0.0086 Score=51.23 Aligned_cols=28 Identities=21% Similarity=0.329 Sum_probs=24.7
Q ss_pred CCceEEEEEecCCCcHHHHHHHHHHHhc
Q 047930 173 PDVNMLGIYGMGGIGKTTLAKEVARKAE 200 (395)
Q Consensus 173 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (395)
...++|.|.|++|+||||.|+.+.+...
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~g 54 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKFH 54 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHHC
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHC
Confidence 4578999999999999999999998754
No 185
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.60 E-value=0.0069 Score=51.39 Aligned_cols=25 Identities=16% Similarity=0.336 Sum_probs=22.0
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHh
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
-.+++|+|+.|+|||||++.+..-.
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3579999999999999999998764
No 186
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.60 E-value=0.0084 Score=49.88 Aligned_cols=26 Identities=27% Similarity=0.328 Sum_probs=22.8
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhc
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARKAE 200 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (395)
..+|.|.|+.|+||||+++.+.....
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999987653
No 187
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.59 E-value=0.0052 Score=50.81 Aligned_cols=26 Identities=27% Similarity=0.344 Sum_probs=18.7
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhc
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARKAE 200 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (395)
..+|.|.|+.|+||||+++.+.....
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 45799999999999999999987654
No 188
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.58 E-value=0.0092 Score=50.65 Aligned_cols=32 Identities=13% Similarity=0.157 Sum_probs=25.6
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhcccCCCCE
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQ 207 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~ 207 (395)
..+|+|.|+.|+||||+++.+.+..... .++.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~-~~~v 40 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCAA-GHRA 40 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHT-TCCE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHc-CCcE
Confidence 4689999999999999999999876432 3444
No 189
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.58 E-value=0.015 Score=53.36 Aligned_cols=30 Identities=23% Similarity=0.308 Sum_probs=24.7
Q ss_pred cCCCceEEEEEecCCCcHHHHHHHHHHHhc
Q 047930 171 KNPDVNMLGIYGMGGIGKTTLAKEVARKAE 200 (395)
Q Consensus 171 ~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (395)
..+....|.|+|+.|+||||+++.++....
T Consensus 20 ~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 20 EDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp TTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred ccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 355667799999999999999998887643
No 190
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.52 E-value=0.0095 Score=50.50 Aligned_cols=32 Identities=19% Similarity=0.215 Sum_probs=25.8
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhcccCCCCE
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQ 207 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~ 207 (395)
..+|+|.|+.|+||||+++.+.+..... +++.
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~~-~~~~ 41 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKNN-NVEV 41 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHHT-TCCE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHc-CCcE
Confidence 4689999999999999999999875432 3554
No 191
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.52 E-value=0.0069 Score=51.93 Aligned_cols=25 Identities=36% Similarity=0.486 Sum_probs=21.8
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHh
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
-.+++|+|+.|+|||||++.+....
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3579999999999999999998754
No 192
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.51 E-value=0.0076 Score=50.96 Aligned_cols=22 Identities=36% Similarity=0.489 Sum_probs=20.2
Q ss_pred eEEEEEecCCCcHHHHHHHHHH
Q 047930 176 NMLGIYGMGGIGKTTLAKEVAR 197 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~ 197 (395)
.+|+|.|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999976
No 193
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=95.50 E-value=0.058 Score=62.15 Aligned_cols=138 Identities=10% Similarity=0.075 Sum_probs=75.0
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCccccchhhhHHHHHHHHhcCCe
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFADKLGLTLHEETESGRARSLCNRLKKEKR 255 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr 255 (395)
+-+.++|++|+|||++|+.+..... .+ ..+.++.+...+...+.+.+-..+.......... ..--..+++
T Consensus 1268 ~~vLL~GPpGtGKT~la~~~l~~~~---~~-~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~~------~~P~~~gk~ 1337 (2695)
T 4akg_A 1268 RGIILCGPPGSGKTMIMNNALRNSS---LY-DVVGINFSKDTTTEHILSALHRHTNYVTTSKGLT------LLPKSDIKN 1337 (2695)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSCS---SC-EEEEEECCTTCCHHHHHHHHHHHBCCEEETTTEE------EEEBSSSSC
T ss_pred CeEEEECCCCCCHHHHHHHHHhcCC---CC-ceEEEEeecCCCHHHHHHHHHHHhhhccccCCcc------ccCCCCCce
Confidence 3577999999999999988776432 12 3556777777777777666665543211000000 000002678
Q ss_pred EEEEEeCCCCc--ccc------chhccccC-----CCCC-------CcEEEEeecchh------hhhhcCCCcceeecCC
Q 047930 256 ILVILDNIWEN--LDF------QAVGIPHG-----DGHK-------GSKVLLTARSLD------VLSRKMDSQQNFSFDV 309 (395)
Q Consensus 256 ~LlVlDdv~~~--~~~------~~l~~~l~-----~~~~-------gs~iivTtR~~~------va~~~~~~~~~~~l~~ 309 (395)
++|++||+.-. +.| +-+...+. +... +..+|.++.... +..+.......+.+..
T Consensus 1338 ~VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllRrf~vi~i~~ 1417 (2695)
T 4akg_A 1338 LVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHAAILYLGY 1417 (2695)
T ss_dssp EEEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHTTEEEEECCC
T ss_pred EEEEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhheeeEEEeCC
Confidence 99999997432 111 11111110 1111 223343442221 1112223346788999
Q ss_pred CChHHHHHHHHHhh
Q 047930 310 LKEDEAWSLFKKMA 323 (395)
Q Consensus 310 L~~~e~~~lf~~~~ 323 (395)
.+.++-..+|....
T Consensus 1418 P~~~~l~~I~~~il 1431 (2695)
T 4akg_A 1418 PSGKSLSQIYEIYY 1431 (2695)
T ss_dssp CTTTHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 99998888888765
No 194
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.50 E-value=0.0089 Score=48.60 Aligned_cols=24 Identities=21% Similarity=0.292 Sum_probs=21.5
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhc
Q 047930 177 MLGIYGMGGIGKTTLAKEVARKAE 200 (395)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~~ 200 (395)
.|.|.|+.|+||||+++.+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999988653
No 195
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.50 E-value=0.0089 Score=49.81 Aligned_cols=24 Identities=33% Similarity=0.505 Sum_probs=21.6
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhc
Q 047930 177 MLGIYGMGGIGKTTLAKEVARKAE 200 (395)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~~ 200 (395)
+|+|.|+.|+||||+++.+.+...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLK 25 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998653
No 196
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.50 E-value=0.12 Score=47.12 Aligned_cols=29 Identities=28% Similarity=0.338 Sum_probs=24.9
Q ss_pred CCceEEEEEecCCCcHHHHHHHHHHHhcc
Q 047930 173 PDVNMLGIYGMGGIGKTTLAKEVARKAEN 201 (395)
Q Consensus 173 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 201 (395)
+...+++|+|+.|+||||+++.+......
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~ 155 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKN 155 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 45679999999999999999999876554
No 197
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.49 E-value=0.0094 Score=51.01 Aligned_cols=26 Identities=23% Similarity=0.253 Sum_probs=22.7
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhc
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARKAE 200 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (395)
...|.|.|+.|+||||+++.+.....
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 45789999999999999999988653
No 198
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.49 E-value=0.0092 Score=51.38 Aligned_cols=25 Identities=24% Similarity=0.294 Sum_probs=22.3
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHh
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
...|.|.|+.|+||||+++.+....
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4679999999999999999998764
No 199
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.47 E-value=0.0091 Score=51.20 Aligned_cols=27 Identities=26% Similarity=0.194 Sum_probs=23.2
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhc
Q 047930 174 DVNMLGIYGMGGIGKTTLAKEVARKAE 200 (395)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (395)
....|.|.|+.|+||||+++.+.....
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 345789999999999999999998754
No 200
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.46 E-value=0.0087 Score=51.34 Aligned_cols=26 Identities=15% Similarity=0.273 Sum_probs=22.7
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhc
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARKAE 200 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (395)
-.+++|+|+.|+|||||.+.+.....
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCC
Confidence 45899999999999999999987653
No 201
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.44 E-value=0.16 Score=49.09 Aligned_cols=28 Identities=29% Similarity=0.385 Sum_probs=22.9
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhcc
Q 047930 174 DVNMLGIYGMGGIGKTTLAKEVARKAEN 201 (395)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 201 (395)
..++|.|+|.+|+||||++..+......
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~ 127 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQR 127 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4679999999999999999999876543
No 202
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=95.42 E-value=0.011 Score=51.71 Aligned_cols=26 Identities=19% Similarity=0.346 Sum_probs=22.7
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHh
Q 047930 174 DVNMLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
...+|+|.|+.|+|||||++.+....
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 44689999999999999999998754
No 203
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=95.42 E-value=0.0096 Score=53.83 Aligned_cols=27 Identities=26% Similarity=0.430 Sum_probs=23.6
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhc
Q 047930 174 DVNMLGIYGMGGIGKTTLAKEVARKAE 200 (395)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (395)
...+++|+|++|+|||||++.++....
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~ 127 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQ 127 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH
Confidence 456899999999999999999987654
No 204
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.40 E-value=0.0055 Score=52.09 Aligned_cols=24 Identities=29% Similarity=0.552 Sum_probs=21.7
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhc
Q 047930 177 MLGIYGMGGIGKTTLAKEVARKAE 200 (395)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~~ 200 (395)
+|+|.|+.|+||||+++.+.....
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999988754
No 205
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.38 E-value=0.02 Score=49.96 Aligned_cols=27 Identities=19% Similarity=0.163 Sum_probs=23.7
Q ss_pred CCceEEEEEecCCCcHHHHHHHHHHHh
Q 047930 173 PDVNMLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 173 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
.....|.|.|+.|+||||+++.+.+..
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 356789999999999999999998765
No 206
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.37 E-value=0.01 Score=48.03 Aligned_cols=26 Identities=31% Similarity=0.355 Sum_probs=22.8
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHh
Q 047930 174 DVNMLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
.-.+++|+|+.|.|||||++.+..-.
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 34589999999999999999998765
No 207
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=95.37 E-value=0.011 Score=51.85 Aligned_cols=27 Identities=30% Similarity=0.405 Sum_probs=23.1
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhc
Q 047930 174 DVNMLGIYGMGGIGKTTLAKEVARKAE 200 (395)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (395)
...+|+|.|+.|+||||+++.+.....
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~Lg 52 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESLN 52 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 346899999999999999999996643
No 208
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.35 E-value=0.011 Score=51.89 Aligned_cols=28 Identities=14% Similarity=0.321 Sum_probs=23.7
Q ss_pred CCceEEEEEecCCCcHHHHHHHHHHHhc
Q 047930 173 PDVNMLGIYGMGGIGKTTLAKEVARKAE 200 (395)
Q Consensus 173 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (395)
....+|+|.|+.|+||||+|+.+.....
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4567899999999999999999988643
No 209
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.33 E-value=0.11 Score=49.62 Aligned_cols=62 Identities=16% Similarity=0.119 Sum_probs=40.4
Q ss_pred HHHHHHHHhcCCCceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHHH
Q 047930 162 TLNDILDALKNPDVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFAD 228 (395)
Q Consensus 162 ~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 228 (395)
.++.++.-+.. -.++.|.|.+|+||||++.+++....... -..++|++.. -+..++...++.
T Consensus 189 ~LD~~lgGl~~--G~l~ii~G~pg~GKT~lal~ia~~~a~~~-g~~vl~~slE--~~~~~l~~R~~~ 250 (444)
T 2q6t_A 189 ELDQLIGTLGP--GSLNIIAARPAMGKTAFALTIAQNAALKE-GVGVGIYSLE--MPAAQLTLRMMC 250 (444)
T ss_dssp HHHHHHCCCCT--TCEEEEEECTTSCHHHHHHHHHHHHHHTT-CCCEEEEESS--SCHHHHHHHHHH
T ss_pred hhhhhcCCcCC--CcEEEEEeCCCCCHHHHHHHHHHHHHHhC-CCeEEEEECC--CCHHHHHHHHHH
Confidence 35555532332 34788999999999999999988765321 1347777664 345566666543
No 210
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=95.29 E-value=0.066 Score=51.26 Aligned_cols=61 Identities=11% Similarity=0.272 Sum_probs=39.4
Q ss_pred HHHHHHHHhcCCCceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHH
Q 047930 162 TLNDILDALKNPDVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFA 227 (395)
Q Consensus 162 ~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 227 (395)
.++.+..-+..+ .++.|.|.+|+|||||+.+++....... -..++|++... +..++...+.
T Consensus 192 ~LD~~~gGl~~G--~liiI~G~pG~GKTtl~l~ia~~~~~~~-g~~Vl~~s~E~--s~~~l~~r~~ 252 (454)
T 2r6a_A 192 ELDRMTSGFQRS--DLIIVAARPSVGKTAFALNIAQNVATKT-NENVAIFSLEM--SAQQLVMRML 252 (454)
T ss_dssp HHHHHHSSBCTT--CEEEEECCTTSCHHHHHHHHHHHHHHHS-SCCEEEEESSS--CHHHHHHHHH
T ss_pred HHHhhcCCCCCC--CEEEEECCCCCCHHHHHHHHHHHHHHhC-CCcEEEEECCC--CHHHHHHHHH
Confidence 355555333333 4788999999999999999988765321 12477777543 3455555543
No 211
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.28 E-value=0.012 Score=49.48 Aligned_cols=25 Identities=20% Similarity=0.254 Sum_probs=22.3
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHh
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
...|+|.|+.|+||||+++.+.+..
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3579999999999999999998765
No 212
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.28 E-value=0.011 Score=49.29 Aligned_cols=24 Identities=29% Similarity=0.441 Sum_probs=21.7
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhc
Q 047930 177 MLGIYGMGGIGKTTLAKEVARKAE 200 (395)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~~ 200 (395)
.|+|.|+.|+||||+++.+.+...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLE 25 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999998763
No 213
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.28 E-value=0.012 Score=49.26 Aligned_cols=27 Identities=26% Similarity=0.388 Sum_probs=23.5
Q ss_pred CCceEEEEEecCCCcHHHHHHHHHHHh
Q 047930 173 PDVNMLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 173 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
....+|+|.|+.|+||||+++.+.+..
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhc
Confidence 346789999999999999999998763
No 214
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=95.27 E-value=0.012 Score=58.63 Aligned_cols=49 Identities=18% Similarity=0.194 Sum_probs=39.3
Q ss_pred cccccchhchHHHHHHHHHHhcCCCceEEEEEecCCCcHHHHHHHHHHHhc
Q 047930 150 NKDYEAFESRMSTLNDILDALKNPDVNMLGIYGMGGIGKTTLAKEVARKAE 200 (395)
Q Consensus 150 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (395)
+.....++|....++.+...+..+ ..+.|+|++|+||||||+.+.....
T Consensus 37 p~~l~~i~G~~~~l~~l~~~i~~g--~~vll~Gp~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 37 EKLIDQVIGQEHAVEVIKTAANQK--RHVLLIGEPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp SSHHHHCCSCHHHHHHHHHHHHTT--CCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred ccccceEECchhhHhhccccccCC--CEEEEEeCCCCCHHHHHHHHhccCC
Confidence 344567889888888777776655 4688999999999999999998654
No 215
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.24 E-value=0.014 Score=51.24 Aligned_cols=26 Identities=23% Similarity=0.272 Sum_probs=23.1
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHh
Q 047930 174 DVNMLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
...+|.|+|++|+||||+++.+....
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 45789999999999999999998765
No 216
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.24 E-value=0.012 Score=50.15 Aligned_cols=24 Identities=33% Similarity=0.497 Sum_probs=21.0
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhc
Q 047930 177 MLGIYGMGGIGKTTLAKEVARKAE 200 (395)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~~ 200 (395)
.|.|.|+.|+||||+|+.+.....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYE 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999987653
No 217
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.20 E-value=0.066 Score=48.11 Aligned_cols=87 Identities=20% Similarity=0.237 Sum_probs=47.0
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCc-CCHHHHHHHHHHHhCCCccc----cchhhhHHHHHHH
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQI-QDIRKIQGEFADKLGLTLHE----ETESGRARSLCNR 249 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~----~~~~~~~~~l~~~ 249 (395)
..++.++|.+|+||||++..++.....+. ..+.++..... ....+.+....+..+.+... .+....+....+.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g--~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~ 175 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKG--FKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEK 175 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTT--CCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCC--CeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHH
Confidence 56899999999999999999987765431 23555554322 22233344445554443211 1111222334444
Q ss_pred HhcCCeEEEEEeCC
Q 047930 250 LKKEKRILVILDNI 263 (395)
Q Consensus 250 l~~~kr~LlVlDdv 263 (395)
+....-=++|+|-.
T Consensus 176 ~~~~~~D~ViIDTp 189 (297)
T 1j8m_F 176 FLSEKMEIIIVDTA 189 (297)
T ss_dssp HHHTTCSEEEEECC
T ss_pred HHhCCCCEEEEeCC
Confidence 43122226778865
No 218
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=95.19 E-value=0.01 Score=48.71 Aligned_cols=26 Identities=31% Similarity=0.360 Sum_probs=22.7
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhcc
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARKAEN 201 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~ 201 (395)
++++|+|..|+|||||++.+..-...
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~ 28 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRE 28 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 57999999999999999999876554
No 219
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.18 E-value=0.014 Score=49.50 Aligned_cols=28 Identities=25% Similarity=0.284 Sum_probs=23.9
Q ss_pred CCceEEEEEecCCCcHHHHHHHHHHHhc
Q 047930 173 PDVNMLGIYGMGGIGKTTLAKEVARKAE 200 (395)
Q Consensus 173 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (395)
....+|.|.|+.|+||||+++.+.....
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3456899999999999999999987654
No 220
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=95.18 E-value=0.031 Score=53.71 Aligned_cols=42 Identities=26% Similarity=0.366 Sum_probs=31.3
Q ss_pred HHHHHHHHHHhcCCCceEEEEEecCCCcHHHHHHHHHHHhccc
Q 047930 160 MSTLNDILDALKNPDVNMLGIYGMGGIGKTTLAKEVARKAENE 202 (395)
Q Consensus 160 ~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 202 (395)
...+..+..++.+++ +.+.|.|.+|+||||++..+.......
T Consensus 31 ~~av~~~~~~i~~~~-~~~li~G~aGTGKT~ll~~~~~~l~~~ 72 (459)
T 3upu_A 31 KNAFNIVMKAIKEKK-HHVTINGPAGTGATTLTKFIIEALIST 72 (459)
T ss_dssp HHHHHHHHHHHHSSS-CEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCC-CEEEEEeCCCCCHHHHHHHHHHHHHhc
Confidence 344556666665444 388999999999999999998876543
No 221
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=95.17 E-value=0.014 Score=48.05 Aligned_cols=26 Identities=23% Similarity=0.282 Sum_probs=22.6
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhc
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARKAE 200 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (395)
..+|.|.|+.|+||||+++.+.....
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~ 30 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLV 30 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 46789999999999999999988653
No 222
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=95.16 E-value=0.024 Score=53.88 Aligned_cols=87 Identities=22% Similarity=0.321 Sum_probs=53.3
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhcccCC--CCEEEEEEeCCcC-CHHHHHHHHHHHhCCC-------ccccchh------
Q 047930 177 MLGIYGMGGIGKTTLAKEVARKAENEKL--FDQVIFVEVSQIQ-DIRKIQGEFADKLGLT-------LHEETES------ 240 (395)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~~~~~~--f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~-------~~~~~~~------ 240 (395)
-++|.|.+|+|||+|+.++++.....+. =+.++++-+.+.. ...++.+++...-... ..+.+..
T Consensus 154 r~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~tsd~p~~~r~~~~ 233 (469)
T 2c61_A 154 KLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNLADDPAVERIVTP 233 (469)
T ss_dssp BCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEEETTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEEECCCCCHHHHHHHH
Confidence 3678899999999999999988764221 1356777776543 4566777766532111 0011111
Q ss_pred hhHHHHHHHHh--cCCeEEEEEeCC
Q 047930 241 GRARSLCNRLK--KEKRILVILDNI 263 (395)
Q Consensus 241 ~~~~~l~~~l~--~~kr~LlVlDdv 263 (395)
...-.+.+++. +++..||++||+
T Consensus 234 ~~a~tiAEyfrdd~G~dVLl~~Dsl 258 (469)
T 2c61_A 234 RMALTAAEYLAYEHGMHVLVILTDI 258 (469)
T ss_dssp HHHHHHHHHHHHHHCCEEEEEEECH
T ss_pred HHHHHHHHHHHHhcCCeEEEEEeCH
Confidence 11223445554 489999999997
No 223
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.15 E-value=0.014 Score=47.98 Aligned_cols=26 Identities=31% Similarity=0.408 Sum_probs=23.0
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhc
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARKAE 200 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (395)
.+++.|+|+.|+|||||+..+.....
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~ 31 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALC 31 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcc
Confidence 56899999999999999999987754
No 224
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.15 E-value=0.015 Score=49.66 Aligned_cols=23 Identities=30% Similarity=0.388 Sum_probs=20.9
Q ss_pred ceEEEEEecCCCcHHHHHHHHHH
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVAR 197 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~ 197 (395)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999975
No 225
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.14 E-value=0.013 Score=49.87 Aligned_cols=23 Identities=30% Similarity=0.450 Sum_probs=20.5
Q ss_pred EEEEEecCCCcHHHHHHHHHHHh
Q 047930 177 MLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
.|.|.|+.|+||||+++.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998764
No 226
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=95.11 E-value=0.013 Score=50.99 Aligned_cols=23 Identities=22% Similarity=0.317 Sum_probs=21.2
Q ss_pred eEEEEEecCCCcHHHHHHHHHHH
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARK 198 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~ 198 (395)
.+++|+|+.|+|||||.+.+..-
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 78999999999999999999864
No 227
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=95.08 E-value=0.037 Score=52.36 Aligned_cols=87 Identities=21% Similarity=0.311 Sum_probs=53.1
Q ss_pred EEEEecCCCcHHHHHHHHHHHhccc-CCCC-EEEEEEeCCc-CCHHHHHHHHHHHhCCC-------ccccchhh------
Q 047930 178 LGIYGMGGIGKTTLAKEVARKAENE-KLFD-QVIFVEVSQI-QDIRKIQGEFADKLGLT-------LHEETESG------ 241 (395)
Q Consensus 178 i~I~G~~GiGKTtLa~~v~~~~~~~-~~f~-~~~wv~~s~~-~~~~~~~~~i~~~l~~~-------~~~~~~~~------ 241 (395)
++|.|..|+|||+|+.++.+..... ++-+ .++++-+.+. ....++.+++...-... ..+.+...
T Consensus 154 ~~Ifgg~G~GKt~L~~~Ia~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~r~~a~~ 233 (465)
T 3vr4_D 154 LPVFSGSGLPHKELAAQIARQATVLDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIERIATPR 233 (465)
T ss_dssp CCEEECTTSCHHHHHHHHHHHCBCSSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEETTSCHHHHHHHHH
T ss_pred EEEeCCCCcChHHHHHHHHHHHHhccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEECCCCCHHHHHHHHH
Confidence 6788999999999999999876531 1112 5677777654 34566666665431110 00111111
Q ss_pred hHHHHHHHHh--cCCeEEEEEeCCC
Q 047930 242 RARSLCNRLK--KEKRILVILDNIW 264 (395)
Q Consensus 242 ~~~~l~~~l~--~~kr~LlVlDdv~ 264 (395)
..-.+.+++. +++..||++||+-
T Consensus 234 ~a~tiAEyfrd~~G~~VLl~~DslT 258 (465)
T 3vr4_D 234 MALTAAEYLAYEKGMHVLVIMTDMT 258 (465)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEECHH
T ss_pred HHHHHHHHHHHhcCCeEEEEEcChH
Confidence 1224556665 3899999999984
No 228
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.07 E-value=0.093 Score=47.10 Aligned_cols=88 Identities=24% Similarity=0.343 Sum_probs=46.2
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCC-HHHHHHHHHHHhCCCccc----cchhhhHHHHHH
Q 047930 174 DVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQD-IRKIQGEFADKLGLTLHE----ETESGRARSLCN 248 (395)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~-~~~~~~~i~~~l~~~~~~----~~~~~~~~~l~~ 248 (395)
...+++|+|.+|+||||++..++....... ..+.++....... ....+....+..+.+.-. ............
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~--~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~ 174 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKG--RRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEE 174 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTT--CCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC--CeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHH
Confidence 346899999999999999999987765431 2344554432211 112233444444443221 111122233333
Q ss_pred HHhcCCeEEEEEeCC
Q 047930 249 RLKKEKRILVILDNI 263 (395)
Q Consensus 249 ~l~~~kr~LlVlDdv 263 (395)
.+...+.=++|+|-.
T Consensus 175 ~~~~~~~D~viiDtp 189 (295)
T 1ls1_A 175 KARLEARDLILVDTA 189 (295)
T ss_dssp HHHHHTCCEEEEECC
T ss_pred HHHhCCCCEEEEeCC
Confidence 332123347888976
No 229
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.07 E-value=0.016 Score=51.84 Aligned_cols=25 Identities=28% Similarity=0.652 Sum_probs=21.9
Q ss_pred CCceEEEEEecCCCcHHHHHHHHHH
Q 047930 173 PDVNMLGIYGMGGIGKTTLAKEVAR 197 (395)
Q Consensus 173 ~~~~vi~I~G~~GiGKTtLa~~v~~ 197 (395)
+...+|+|.|+.|+||||+++.+..
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999999983
No 230
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=95.05 E-value=0.0083 Score=55.53 Aligned_cols=51 Identities=20% Similarity=0.113 Sum_probs=33.4
Q ss_pred HHHHHhcC-CCceEEEEEecCCCcHHHHHHHHHHHhccc-CCCCEEEEEEeCCc
Q 047930 165 DILDALKN-PDVNMLGIYGMGGIGKTTLAKEVARKAENE-KLFDQVIFVEVSQI 216 (395)
Q Consensus 165 ~l~~~l~~-~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~-~~f~~~~wv~~s~~ 216 (395)
+.++.+.. ..-.-+.|.|.+|+|||+|+.++.+..... ..+. ++++-+.+.
T Consensus 164 raID~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv~-~V~~lIGER 216 (427)
T 3l0o_A 164 RLIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANGIAENHPDTI-RIILLIDER 216 (427)
T ss_dssp HHHHHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHHHHHCTTSE-EEEEECSCC
T ss_pred hhhhhcccccCCceEEEecCCCCChhHHHHHHHHHHhhcCCCeE-EEEEEeccC
Confidence 45566552 223458899999999999999998875432 1233 356666654
No 231
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=95.02 E-value=0.012 Score=49.11 Aligned_cols=24 Identities=29% Similarity=0.393 Sum_probs=21.1
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhc
Q 047930 177 MLGIYGMGGIGKTTLAKEVARKAE 200 (395)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~~ 200 (395)
+++|+|+.|+|||||++.+.....
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhcc
Confidence 689999999999999999987653
No 232
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=94.99 E-value=0.013 Score=50.86 Aligned_cols=23 Identities=26% Similarity=0.446 Sum_probs=20.6
Q ss_pred eEEEEEecCCCcHHHHHHHHHHH
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARK 198 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~ 198 (395)
.+++|+|+.|+|||||++.+..-
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 47999999999999999998753
No 233
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=94.98 E-value=0.013 Score=51.41 Aligned_cols=25 Identities=40% Similarity=0.481 Sum_probs=22.2
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhc
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARKAE 200 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (395)
.+|.|+|+.|+||||+++.+.....
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4799999999999999999998654
No 234
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=94.97 E-value=0.0089 Score=51.62 Aligned_cols=23 Identities=30% Similarity=0.459 Sum_probs=15.9
Q ss_pred eEEEEEecCCCcHHHHHHHHH-HH
Q 047930 176 NMLGIYGMGGIGKTTLAKEVA-RK 198 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~-~~ 198 (395)
.+++|+|+.|+|||||++.+. ..
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC--
T ss_pred CEEEEECCCCCCHHHHHHHHHhcC
Confidence 589999999999999999998 54
No 235
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=94.97 E-value=0.095 Score=49.49 Aligned_cols=28 Identities=36% Similarity=0.410 Sum_probs=24.0
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhcc
Q 047930 174 DVNMLGIYGMGGIGKTTLAKEVARKAEN 201 (395)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 201 (395)
...++.++|++|+||||++..++.....
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~ 124 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKG 124 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3568999999999999999999887654
No 236
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=94.95 E-value=0.012 Score=50.60 Aligned_cols=23 Identities=30% Similarity=0.420 Sum_probs=20.5
Q ss_pred eEEEEEecCCCcHHHHHHHHHHH
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARK 198 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~ 198 (395)
.+++|+|+.|+|||||.+.+..-
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999998754
No 237
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=94.95 E-value=0.018 Score=52.24 Aligned_cols=28 Identities=21% Similarity=0.225 Sum_probs=23.8
Q ss_pred CCceEEEEEecCCCcHHHHHHHHHHHhc
Q 047930 173 PDVNMLGIYGMGGIGKTTLAKEVARKAE 200 (395)
Q Consensus 173 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (395)
....+|+|+|+.|+|||||++.+.....
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3457999999999999999999987643
No 238
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=94.95 E-value=0.017 Score=49.98 Aligned_cols=26 Identities=23% Similarity=0.450 Sum_probs=22.8
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhc
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARKAE 200 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (395)
..+|.|.|++|+||||+++.+.....
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45899999999999999999987653
No 239
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=94.94 E-value=0.016 Score=52.96 Aligned_cols=24 Identities=42% Similarity=0.447 Sum_probs=21.9
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHh
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
.+|+|.|+.|+||||||..+....
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 489999999999999999999864
No 240
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=94.92 E-value=0.021 Score=48.01 Aligned_cols=26 Identities=19% Similarity=0.195 Sum_probs=22.5
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhc
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARKAE 200 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (395)
...+.|+|++|+||||+|..+++...
T Consensus 58 kn~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 58 KNCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp CSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34689999999999999999988764
No 241
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=94.87 E-value=0.018 Score=51.99 Aligned_cols=27 Identities=30% Similarity=0.396 Sum_probs=23.3
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhc
Q 047930 174 DVNMLGIYGMGGIGKTTLAKEVARKAE 200 (395)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (395)
...+++|+|+.|+||||+++.++....
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~ 125 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLK 125 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 346899999999999999999987654
No 242
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=94.83 E-value=0.063 Score=46.48 Aligned_cols=48 Identities=27% Similarity=0.376 Sum_probs=31.3
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHH
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEF 226 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 226 (395)
.++.|.|.+|+|||++|.+++.+...+. -..++|++... +...+...+
T Consensus 31 ~l~~i~G~pG~GKT~l~l~~~~~~~~~~-~~~v~~~s~E~--~~~~~~~~~ 78 (251)
T 2zts_A 31 TTVLLTGGTGTGKTTFAAQFIYKGAEEY-GEPGVFVTLEE--RARDLRREM 78 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHHH-CCCEEEEESSS--CHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHhc-CCCceeecccC--CHHHHHHHH
Confidence 5788999999999999999765432211 23456666543 455555444
No 243
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=94.83 E-value=0.018 Score=48.49 Aligned_cols=24 Identities=29% Similarity=0.426 Sum_probs=21.7
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhc
Q 047930 177 MLGIYGMGGIGKTTLAKEVARKAE 200 (395)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~~ 200 (395)
+|+|.|+.|+||||+++.+.....
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 899999999999999999987653
No 244
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=94.82 E-value=0.018 Score=52.23 Aligned_cols=24 Identities=29% Similarity=0.293 Sum_probs=21.8
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHh
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
++|.|+|+.|+|||||+..+....
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 579999999999999999999864
No 245
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=94.79 E-value=0.061 Score=48.21 Aligned_cols=38 Identities=16% Similarity=0.198 Sum_probs=27.9
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeC
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVS 214 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s 214 (395)
.+++|.|++|+|||||+..++....... -..++|++..
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia~~~~~~~-G~~v~~~~~e 73 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQALQWGTAM-GKKVGLAMLE 73 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTS-CCCEEEEESS
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHHc-CCeEEEEeCc
Confidence 4799999999999999999987765331 1136666553
No 246
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=94.79 E-value=0.02 Score=48.94 Aligned_cols=25 Identities=24% Similarity=0.278 Sum_probs=22.1
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhc
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARKAE 200 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (395)
..|.|.|+.|+||||+++.+.....
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~ 30 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYG 30 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4688999999999999999988753
No 247
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=94.79 E-value=0.021 Score=49.30 Aligned_cols=26 Identities=27% Similarity=0.188 Sum_probs=22.7
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhc
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARKAE 200 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (395)
...|.|.|+.|+||||+++.+.+...
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35789999999999999999998753
No 248
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=94.77 E-value=0.019 Score=51.67 Aligned_cols=25 Identities=24% Similarity=0.408 Sum_probs=22.0
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHh
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
.++|.|.|+.|+|||||+..++...
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 3588999999999999999998754
No 249
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=94.76 E-value=0.039 Score=51.01 Aligned_cols=37 Identities=24% Similarity=0.397 Sum_probs=28.4
Q ss_pred HHHHHHhc--CCCceEEEEEecCCCcHHHHHHHHHHHhc
Q 047930 164 NDILDALK--NPDVNMLGIYGMGGIGKTTLAKEVARKAE 200 (395)
Q Consensus 164 ~~l~~~l~--~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (395)
..++..+. .++..+|+|+|.+|+|||||+..+.....
T Consensus 66 ~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l~ 104 (355)
T 3p32_A 66 QQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHLI 104 (355)
T ss_dssp HHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34444443 45678999999999999999999987653
No 250
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=94.76 E-value=0.02 Score=48.71 Aligned_cols=23 Identities=26% Similarity=0.190 Sum_probs=20.8
Q ss_pred EEEEEecCCCcHHHHHHHHHHHh
Q 047930 177 MLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
.|.|.|+.|+||||+++.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998865
No 251
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=94.73 E-value=0.019 Score=52.39 Aligned_cols=25 Identities=28% Similarity=0.461 Sum_probs=22.2
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHh
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
.++|.|+|+.|+|||||+..++...
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHC
Confidence 4689999999999999999999754
No 252
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=94.73 E-value=0.02 Score=49.19 Aligned_cols=23 Identities=35% Similarity=0.385 Sum_probs=20.9
Q ss_pred EEEEEecCCCcHHHHHHHHHHHh
Q 047930 177 MLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
.|.|.|+.|+||||+++.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998765
No 253
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=94.72 E-value=0.012 Score=49.92 Aligned_cols=23 Identities=35% Similarity=0.294 Sum_probs=20.8
Q ss_pred eEEEEEecCCCcHHHHHHHHHHH
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARK 198 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~ 198 (395)
.+++|+|+.|+|||||++.+..-
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 47899999999999999999865
No 254
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=94.71 E-value=0.015 Score=50.52 Aligned_cols=24 Identities=21% Similarity=0.429 Sum_probs=21.3
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHh
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
.+++|+|+.|+|||||++.+..-.
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 479999999999999999997653
No 255
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=94.70 E-value=0.025 Score=50.87 Aligned_cols=26 Identities=27% Similarity=0.229 Sum_probs=22.9
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHh
Q 047930 174 DVNMLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
..++|.|+|+.|+||||||..++...
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhC
Confidence 35689999999999999999999764
No 256
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=94.69 E-value=0.019 Score=54.52 Aligned_cols=46 Identities=24% Similarity=0.330 Sum_probs=32.9
Q ss_pred chhchHHHHHHHHHHhcC--------------CCceEEEEEecCCCcHHHHHHHHHHHhc
Q 047930 155 AFESRMSTLNDILDALKN--------------PDVNMLGIYGMGGIGKTTLAKEVARKAE 200 (395)
Q Consensus 155 ~~~gr~~~~~~l~~~l~~--------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (395)
.++|.++.++.+..++.. ...+.|.++|++|+||||+|+.++....
T Consensus 16 ~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~ 75 (444)
T 1g41_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN 75 (444)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred HhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcC
Confidence 356666666665544411 1345688999999999999999998764
No 257
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=94.68 E-value=0.12 Score=49.21 Aligned_cols=60 Identities=18% Similarity=0.182 Sum_probs=38.7
Q ss_pred HHHHHHHHhcCCCceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHH
Q 047930 162 TLNDILDALKNPDVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFA 227 (395)
Q Consensus 162 ~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 227 (395)
.++.++.-+.. -.++.|.|.+|+||||++.+++.+...+ -..++|++... +..++...+.
T Consensus 186 ~LD~~lgGl~~--G~liiIaG~pG~GKTtlal~ia~~~a~~--g~~vl~fSlEm--s~~ql~~R~~ 245 (444)
T 3bgw_A 186 ELDRMTYGYKR--RNFVLIAARPSMGKTAFALKQAKNMSDN--DDVVNLHSLEM--GKKENIKRLI 245 (444)
T ss_dssp HHHHHHSSBCS--SCEEEEEECSSSSHHHHHHHHHHHHHHT--TCEEEEECSSS--CTTHHHHHHH
T ss_pred HHHhhcCCCCC--CcEEEEEeCCCCChHHHHHHHHHHHHHc--CCEEEEEECCC--CHHHHHHHHH
Confidence 35555543332 3468899999999999999999886544 23577776543 3334444443
No 258
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=94.68 E-value=0.015 Score=51.34 Aligned_cols=24 Identities=25% Similarity=0.407 Sum_probs=21.0
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHH
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARK 198 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~ 198 (395)
-.+++|+|+.|+|||||++.+..-
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 357999999999999999998754
No 259
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=94.67 E-value=0.047 Score=47.05 Aligned_cols=28 Identities=29% Similarity=0.334 Sum_probs=24.4
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhcc
Q 047930 174 DVNMLGIYGMGGIGKTTLAKEVARKAEN 201 (395)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 201 (395)
....|+|.|+.|+||||+++.+.+....
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 3468999999999999999999988754
No 260
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=94.67 E-value=0.021 Score=48.35 Aligned_cols=24 Identities=38% Similarity=0.488 Sum_probs=21.5
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhc
Q 047930 177 MLGIYGMGGIGKTTLAKEVARKAE 200 (395)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~~ 200 (395)
+|.|.|++|+||+|.|+.+.+...
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g 25 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG 25 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 688999999999999999998754
No 261
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=94.66 E-value=0.019 Score=50.37 Aligned_cols=23 Identities=35% Similarity=0.531 Sum_probs=20.9
Q ss_pred eEEEEEecCCCcHHHHHHHHHHH
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARK 198 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~ 198 (395)
.+++|+|+.|+|||||++.+..-
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999999873
No 262
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=94.66 E-value=0.061 Score=46.54 Aligned_cols=52 Identities=15% Similarity=0.176 Sum_probs=33.8
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHH
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFA 227 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 227 (395)
...|.|.|+.|+||||+++.+.+..... .+..+....-+......+.+++++
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~~-~~~~~~~~rep~~t~~g~~ir~~l 78 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQN-GIDHITRTREPGGTLLAEKLRALV 78 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHHT-TCCCEEEEESSCSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhc-CCCeeeeecCCCCCHHHHHHHHHH
Confidence 4689999999999999999999887653 355344443333222334444444
No 263
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=94.66 E-value=0.075 Score=58.57 Aligned_cols=85 Identities=22% Similarity=0.298 Sum_probs=52.5
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCccc------cchhhhHHHHHH
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFADKLGLTLHE------ETESGRARSLCN 248 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~------~~~~~~~~~l~~ 248 (395)
-.++.|.|++|+||||||.+++.....+ -..++|++........ .++.++..... .+.......+..
T Consensus 732 G~lVlI~G~PG~GKTtLal~lA~~aa~~--g~~VlyiS~Ees~~ql-----~A~~lGvd~~~L~i~~~~~leei~~~l~~ 804 (1706)
T 3cmw_A 732 GRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICDA 804 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEECTTSCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCcHHHHHHHHHHHHHc--CCCeEEEeccchHHHH-----HHHHcCCChhheEEecCCcHHHHHHHHHH
Confidence 3578999999999999999998876543 2247788776665432 15556543221 111222223322
Q ss_pred HHhcCCeEEEEEeCCCCc
Q 047930 249 RLKKEKRILVILDNIWEN 266 (395)
Q Consensus 249 ~l~~~kr~LlVlDdv~~~ 266 (395)
.....+.-+||+|.+...
T Consensus 805 lv~~~~~~lVVIDsLq~l 822 (1706)
T 3cmw_A 805 LARSGAVDVIVVDSVAAL 822 (1706)
T ss_dssp HHHHTCCSEEEESCSTTC
T ss_pred HHHccCCCEEEEechhhh
Confidence 222355679999998643
No 264
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=94.62 E-value=0.08 Score=50.09 Aligned_cols=88 Identities=24% Similarity=0.325 Sum_probs=53.1
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhccc--------CCCC-EEEEEEeCCcC-CHHHHHHHHHHHhCCC--------ccccc
Q 047930 177 MLGIYGMGGIGKTTLAKEVARKAENE--------KLFD-QVIFVEVSQIQ-DIRKIQGEFADKLGLT--------LHEET 238 (395)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~~~~--------~~f~-~~~wv~~s~~~-~~~~~~~~i~~~l~~~--------~~~~~ 238 (395)
-++|.|.+|+|||+|+.++.+..... ++-+ .++++-+.+.. ...++.+++...-... .++..
T Consensus 149 r~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~rtvvv~~t~d~p~ 228 (464)
T 3gqb_B 149 KLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALSRSVLFLNKADDPT 228 (464)
T ss_dssp BCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGGGEEEEEEETTSCT
T ss_pred EEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhcccccceEEEEECCCCCH
Confidence 36788999999999999999876541 1222 46777776543 4566666654421010 11111
Q ss_pred hh-----hhHHHHHHHHh--cCCeEEEEEeCCC
Q 047930 239 ES-----GRARSLCNRLK--KEKRILVILDNIW 264 (395)
Q Consensus 239 ~~-----~~~~~l~~~l~--~~kr~LlVlDdv~ 264 (395)
.. ...-.+.+++. +++..||++||+-
T Consensus 229 ~~r~~~~~~a~tiAEyfrd~~G~~VLl~~DdlT 261 (464)
T 3gqb_B 229 IERILTPRMALTVAEYLAFEHDYHVLVILTDMT 261 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCEEEEEEETHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChH
Confidence 11 11224555655 3899999999984
No 265
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=94.62 E-value=0.018 Score=51.20 Aligned_cols=23 Identities=30% Similarity=0.486 Sum_probs=20.5
Q ss_pred eEEEEEecCCCcHHHHHHHHHHH
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARK 198 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~ 198 (395)
.+++|+|+.|+|||||++.+..-
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHHcC
Confidence 47999999999999999998753
No 266
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=94.61 E-value=0.021 Score=50.33 Aligned_cols=109 Identities=12% Similarity=0.108 Sum_probs=54.3
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCC-cCCHHHHHHHHHH--HhCCCccccchhhhHHHHHHHH
Q 047930 174 DVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQ-IQDIRKIQGEFAD--KLGLTLHEETESGRARSLCNRL 250 (395)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~--~l~~~~~~~~~~~~~~~l~~~l 250 (395)
.-.+++|+|+.|+|||||++.+....... +...+++.-.. .+-.... ..+.. .++. ........+...|
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~~~~--~~G~I~~~g~~i~~~~~~~-~~~v~q~~~gl-----~~~~l~~~la~aL 95 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYINQT--KSYHIITIEDPIEYVFKHK-KSIVNQREVGE-----DTKSFADALRAAL 95 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHHHHH--CCCEEEEEESSCCSCCCCS-SSEEEEEEBTT-----TBSCHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhCCCC--CCCEEEEcCCcceeecCCc-ceeeeHHHhCC-----CHHHHHHHHHHHH
Confidence 44689999999999999999988754321 12233222110 0000000 00000 0000 0112233455555
Q ss_pred hcCCeEEEEEeCCCCccccchhccccCCCCCCcEEEEeecchhh
Q 047930 251 KKEKRILVILDNIWENLDFQAVGIPHGDGHKGSKVLLTARSLDV 294 (395)
Q Consensus 251 ~~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v 294 (395)
.. ++=+|++|+..+......+.... ..|..|++||.+.+.
T Consensus 96 ~~-~p~illlDEp~D~~~~~~~l~~~---~~g~~vl~t~H~~~~ 135 (261)
T 2eyu_A 96 RE-DPDVIFVGEMRDLETVETALRAA---ETGHLVFGTLHTNTA 135 (261)
T ss_dssp HH-CCSEEEESCCCSHHHHHHHHHHH---HTTCEEEEEECCSSH
T ss_pred hh-CCCEEEeCCCCCHHHHHHHHHHH---ccCCEEEEEeCcchH
Confidence 53 45688889987544333322221 235668888876553
No 267
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=94.60 E-value=0.021 Score=51.32 Aligned_cols=23 Identities=35% Similarity=0.479 Sum_probs=21.0
Q ss_pred eEEEEEecCCCcHHHHHHHHHHH
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARK 198 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~ 198 (395)
.+|.|.|++|+||||+++.+...
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999999874
No 268
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=94.57 E-value=0.017 Score=50.89 Aligned_cols=23 Identities=30% Similarity=0.379 Sum_probs=20.6
Q ss_pred eEEEEEecCCCcHHHHHHHHHHH
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARK 198 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~ 198 (395)
.+++|+|+.|+|||||.+.+..-
T Consensus 34 e~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999998754
No 269
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.57 E-value=0.017 Score=50.29 Aligned_cols=23 Identities=30% Similarity=0.478 Sum_probs=20.6
Q ss_pred eEEEEEecCCCcHHHHHHHHHHH
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARK 198 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~ 198 (395)
.+++|+|+.|+|||||.+.++.-
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999998754
No 270
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=94.57 E-value=0.12 Score=44.29 Aligned_cols=25 Identities=32% Similarity=0.276 Sum_probs=22.0
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhc
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARKAE 200 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (395)
..++|.|++|+||||+++.+.+...
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~g 33 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKFG 33 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred cceeeECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999988764
No 271
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=94.56 E-value=0.023 Score=47.30 Aligned_cols=25 Identities=24% Similarity=0.440 Sum_probs=21.7
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHh
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
.-.++|+|..|+|||||++.+....
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 3468899999999999999998754
No 272
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=94.55 E-value=0.02 Score=50.67 Aligned_cols=23 Identities=35% Similarity=0.560 Sum_probs=21.0
Q ss_pred eEEEEEecCCCcHHHHHHHHHHH
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARK 198 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~ 198 (395)
.+++|+|+.|+|||||++.++.-
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 57999999999999999999874
No 273
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=94.54 E-value=0.018 Score=49.79 Aligned_cols=24 Identities=29% Similarity=0.465 Sum_probs=21.3
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHh
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
.+++|+|+.|+|||||.+.+..-.
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 479999999999999999998654
No 274
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=94.54 E-value=0.074 Score=45.23 Aligned_cols=52 Identities=19% Similarity=0.200 Sum_probs=34.7
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHHH
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFAD 228 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 228 (395)
..|.+.|+.|+||||+++.+.+..... .+..+.+..-+......+.+++++.
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~~~-~~~~v~~~rep~~t~~g~~ir~~l~ 55 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLEQL-GIRDMVFTREPGGTQLAEKLRSLLL 55 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHT-TCCCEEEEESSCSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc-CCCcceeeeCCCCCHHHHHHHHHHh
Confidence 478999999999999999999887654 3423344333333334555555554
No 275
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=94.52 E-value=0.015 Score=49.58 Aligned_cols=23 Identities=43% Similarity=0.641 Sum_probs=20.5
Q ss_pred eEEEEEecCCCcHHHHHHHHHHH
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARK 198 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~ 198 (395)
.+++|+|+.|+|||||++.++.-
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999998764
No 276
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=94.51 E-value=0.018 Score=50.40 Aligned_cols=23 Identities=43% Similarity=0.696 Sum_probs=20.6
Q ss_pred eEEEEEecCCCcHHHHHHHHHHH
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARK 198 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~ 198 (395)
.+++|+|+.|+|||||++.+..-
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999998754
No 277
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=94.50 E-value=0.019 Score=50.13 Aligned_cols=24 Identities=25% Similarity=0.346 Sum_probs=21.0
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHH
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARK 198 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~ 198 (395)
-.+++|+|+.|+|||||++.+..-
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 357999999999999999998753
No 278
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=94.50 E-value=0.021 Score=54.12 Aligned_cols=28 Identities=29% Similarity=0.451 Sum_probs=24.1
Q ss_pred CCCceEEEEEecCCCcHHHHHHHHHHHh
Q 047930 172 NPDVNMLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 172 ~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
.....+|.|+|++|+||||+|+.+....
T Consensus 255 ~~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 255 SPNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp CSSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 3456899999999999999999998754
No 279
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=94.50 E-value=0.018 Score=50.89 Aligned_cols=24 Identities=21% Similarity=0.293 Sum_probs=21.1
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHH
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARK 198 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~ 198 (395)
-.+++|+|+.|+|||||++.+..-
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEEcCCCCcHHHHHHHHHcC
Confidence 357999999999999999998754
No 280
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=94.49 E-value=0.02 Score=50.66 Aligned_cols=23 Identities=35% Similarity=0.537 Sum_probs=20.6
Q ss_pred eEEEEEecCCCcHHHHHHHHHHH
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARK 198 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~ 198 (395)
.+++|+|+.|+|||||++.+..-
T Consensus 38 e~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 57999999999999999998754
No 281
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=94.49 E-value=0.025 Score=52.29 Aligned_cols=27 Identities=30% Similarity=0.396 Sum_probs=23.5
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhc
Q 047930 174 DVNMLGIYGMGGIGKTTLAKEVARKAE 200 (395)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (395)
...+++|+|+.|+||||+++.++....
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~ 182 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLK 182 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhcc
Confidence 356899999999999999999987654
No 282
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=94.46 E-value=0.012 Score=52.93 Aligned_cols=27 Identities=15% Similarity=0.320 Sum_probs=20.3
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhc
Q 047930 174 DVNMLGIYGMGGIGKTTLAKEVARKAE 200 (395)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (395)
+..+|+|.|..|+||||+++.+.+...
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 456899999999999999999987543
No 283
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=94.44 E-value=0.028 Score=50.72 Aligned_cols=41 Identities=22% Similarity=0.422 Sum_probs=29.6
Q ss_pred CCCceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeC
Q 047930 172 NPDVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVS 214 (395)
Q Consensus 172 ~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s 214 (395)
....++|+|+|-||+||||+|..++......+ ..++-+...
T Consensus 38 ~~~~~vI~v~~KGGvGKTT~a~nLA~~La~~G--~~VlliD~D 78 (307)
T 3end_A 38 ITGAKVFAVYGKGGIGKSTTSSNLSAAFSILG--KRVLQIGCD 78 (307)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHHHHHHTT--CCEEEEEES
T ss_pred cCCceEEEEECCCCccHHHHHHHHHHHHHHCC--CeEEEEeCC
Confidence 45678999999999999999999988765432 135555554
No 284
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=94.40 E-value=0.066 Score=51.22 Aligned_cols=84 Identities=23% Similarity=0.259 Sum_probs=50.5
Q ss_pred EEEEEecCCCcHHHHH-HHHHHHhcccCCCCE-EEEEEeCCcC-CHHHHHHHHHHHhCCCc-------cccchhh-----
Q 047930 177 MLGIYGMGGIGKTTLA-KEVARKAENEKLFDQ-VIFVEVSQIQ-DIRKIQGEFADKLGLTL-------HEETESG----- 241 (395)
Q Consensus 177 vi~I~G~~GiGKTtLa-~~v~~~~~~~~~f~~-~~wv~~s~~~-~~~~~~~~i~~~l~~~~-------~~~~~~~----- 241 (395)
-++|.|..|+|||+|| ..+.+... -+. ++++-+.+.. ...++.+++...-.... ...+...
T Consensus 164 R~~Ifg~~g~GKT~Lal~~I~~~~~----~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~~r~~a~ 239 (502)
T 2qe7_A 164 RELIIGDRQTGKTTIAIDTIINQKG----QDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTASASEPAPLLYLAP 239 (502)
T ss_dssp BCEEEECSSSCHHHHHHHHHHGGGS----CSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEECTTSCHHHHHHHH
T ss_pred EEEEECCCCCCchHHHHHHHHHhhc----CCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEECCCCCHHHHHHHH
Confidence 4789999999999995 46666542 443 5777777654 45666666665322111 0111111
Q ss_pred -hHHHHHHHHh-cCCeEEEEEeCCC
Q 047930 242 -RARSLCNRLK-KEKRILVILDNIW 264 (395)
Q Consensus 242 -~~~~l~~~l~-~~kr~LlVlDdv~ 264 (395)
..-.+-+++. +++..||++||+.
T Consensus 240 ~~a~tiAEyfrd~G~dVLl~~Dslt 264 (502)
T 2qe7_A 240 YAGCAMGEYFMYKGKHALVVYDDLS 264 (502)
T ss_dssp HHHHHHHHHHHTTTCEEEEEEECHH
T ss_pred HHHHHHHHHHHHcCCcEEEEEecHH
Confidence 1123344443 4899999999984
No 285
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.39 E-value=0.019 Score=50.43 Aligned_cols=23 Identities=30% Similarity=0.561 Sum_probs=20.7
Q ss_pred eEEEEEecCCCcHHHHHHHHHHH
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARK 198 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~ 198 (395)
.+++|+|+.|+|||||.+.++.-
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999998754
No 286
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=94.38 E-value=0.12 Score=49.99 Aligned_cols=47 Identities=23% Similarity=0.403 Sum_probs=35.4
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCC-HHHHHHHH
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQD-IRKIQGEF 226 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~-~~~~~~~i 226 (395)
.-++|.|..|+|||+|+.++.+... -+.++++-+.+... ..++++++
T Consensus 228 qr~~I~g~~g~GKT~L~~~ia~~~~----~~~~V~~~iGER~~Ev~e~~~~~ 275 (588)
T 3mfy_A 228 GTAAIPGPAGSGKTVTQHQLAKWSD----AQVVIYIGCGERGNEMTDVLEEF 275 (588)
T ss_dssp CEEEECSCCSHHHHHHHHHHHHHSS----CSEEEEEECCSSSSHHHHHHHHT
T ss_pred CeEEeecCCCCCHHHHHHHHHhccC----CCEEEEEEecccHHHHHHHHHHH
Confidence 3588999999999999999887632 45788888887654 45555554
No 287
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=94.37 E-value=0.02 Score=50.87 Aligned_cols=24 Identities=25% Similarity=0.335 Sum_probs=21.1
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHH
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARK 198 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~ 198 (395)
-.+++|+|+.|+|||||++.++.-
T Consensus 45 Ge~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 45 GKVTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 357999999999999999998754
No 288
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=94.37 E-value=0.02 Score=50.49 Aligned_cols=23 Identities=35% Similarity=0.436 Sum_probs=20.6
Q ss_pred eEEEEEecCCCcHHHHHHHHHHH
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARK 198 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~ 198 (395)
.+++|+|+.|+|||||++.+..-
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 47999999999999999998754
No 289
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=94.36 E-value=0.042 Score=48.11 Aligned_cols=27 Identities=37% Similarity=0.448 Sum_probs=23.4
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhc
Q 047930 174 DVNMLGIYGMGGIGKTTLAKEVARKAE 200 (395)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (395)
...++.+.|.||+||||++..+.....
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~ 39 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLE 39 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 357888999999999999999987655
No 290
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=94.36 E-value=0.068 Score=51.20 Aligned_cols=84 Identities=17% Similarity=0.229 Sum_probs=50.2
Q ss_pred EEEEEecCCCcHHHHH-HHHHHHhcccCCCCE-EEEEEeCCcC-CHHHHHHHHHHHhCC--------Cccccchhh----
Q 047930 177 MLGIYGMGGIGKTTLA-KEVARKAENEKLFDQ-VIFVEVSQIQ-DIRKIQGEFADKLGL--------TLHEETESG---- 241 (395)
Q Consensus 177 vi~I~G~~GiGKTtLa-~~v~~~~~~~~~f~~-~~wv~~s~~~-~~~~~~~~i~~~l~~--------~~~~~~~~~---- 241 (395)
-++|.|..|+|||+|| ..+.+... -+. ++++-+.+.. ...++.+++...-.. ..++.....
T Consensus 177 R~~I~g~~g~GKT~Lal~~I~~~~~----~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~atad~p~~~r~~a~ 252 (515)
T 2r9v_A 177 RELIIGDRQTGKTAIAIDTIINQKG----QGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVASASDPASLQYIAP 252 (515)
T ss_dssp BEEEEEETTSSHHHHHHHHHHTTTT----TTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEECTTSCHHHHHHHH
T ss_pred EEEEEcCCCCCccHHHHHHHHHhhc----CCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEECCCCCHHHHHHHH
Confidence 4789999999999995 46666542 453 5777777654 456666666543111 111111110
Q ss_pred -hHHHHHHHHh-cCCeEEEEEeCCC
Q 047930 242 -RARSLCNRLK-KEKRILVILDNIW 264 (395)
Q Consensus 242 -~~~~l~~~l~-~~kr~LlVlDdv~ 264 (395)
..-.+-+++. +++..||++||+.
T Consensus 253 ~~a~tiAEyfrd~G~dVLli~DslT 277 (515)
T 2r9v_A 253 YAGCAMGEYFAYSGRDALVVYDDLS 277 (515)
T ss_dssp HHHHHHHHHHHTTTCEEEEEEETHH
T ss_pred HHHHHHHHHHHHcCCcEEEEeccHH
Confidence 1123344443 4899999999984
No 291
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=94.30 E-value=0.021 Score=49.99 Aligned_cols=23 Identities=35% Similarity=0.527 Sum_probs=20.5
Q ss_pred eEEEEEecCCCcHHHHHHHHHHH
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARK 198 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~ 198 (395)
.+++|+|+.|+|||||.+.+..-
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 47999999999999999998754
No 292
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=94.28 E-value=0.025 Score=47.31 Aligned_cols=24 Identities=25% Similarity=0.433 Sum_probs=21.0
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHh
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
-.++|+|..|+|||||.+.+....
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCC
Confidence 458899999999999999998753
No 293
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=94.27 E-value=0.025 Score=51.03 Aligned_cols=26 Identities=23% Similarity=0.286 Sum_probs=22.3
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHh
Q 047930 174 DVNMLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
.-.+++|+|+.|+|||||++.+..-.
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 34579999999999999999988654
No 294
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=94.26 E-value=0.021 Score=50.49 Aligned_cols=23 Identities=39% Similarity=0.388 Sum_probs=20.6
Q ss_pred eEEEEEecCCCcHHHHHHHHHHH
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARK 198 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~ 198 (395)
.+++|+|+.|+|||||++.++.-
T Consensus 34 e~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 47999999999999999998754
No 295
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=94.26 E-value=0.027 Score=49.88 Aligned_cols=23 Identities=26% Similarity=0.511 Sum_probs=20.6
Q ss_pred EEEEEecCCCcHHHHHHHHHHHh
Q 047930 177 MLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
.++|+|+.|+|||||.+.++...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998754
No 296
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.24 E-value=0.11 Score=58.19 Aligned_cols=84 Identities=23% Similarity=0.313 Sum_probs=53.2
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCccc------cchhhhHHHHHH
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFADKLGLTLHE------ETESGRARSLCN 248 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~------~~~~~~~~~l~~ 248 (395)
-.++.|.|++|+||||||.+++...... -..++|++.....+.. .++.++.+... .+..+....+..
T Consensus 383 G~lilI~G~pGsGKTtLaLqia~~~a~~--G~~vlyis~E~s~~~~-----~a~~lGvd~~~L~I~~~~~~e~il~~~~~ 455 (2050)
T 3cmu_A 383 GRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICDA 455 (2050)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHHHTT--TCCEEEECTTSCCCHH-----HHHHTTCCTTTCEEECCSSHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHhc--CCeEEEEEcCCCHHHH-----HHHHcCCCHHHeEEeCCCCHHHHHHHHHH
Confidence 4589999999999999999998876533 2357888887776643 25566553221 111222222222
Q ss_pred HHhcCCeEEEEEeCCCC
Q 047930 249 RLKKEKRILVILDNIWE 265 (395)
Q Consensus 249 ~l~~~kr~LlVlDdv~~ 265 (395)
.....+.-+||+|.+..
T Consensus 456 lv~~~~~~lIVIDSL~a 472 (2050)
T 3cmu_A 456 LARSGAVDVIVVDSVAA 472 (2050)
T ss_dssp HHHHTCCSEEEESCGGG
T ss_pred HHHhcCCcEEEECCHHH
Confidence 22235566999999853
No 297
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=94.23 E-value=0.022 Score=50.81 Aligned_cols=23 Identities=35% Similarity=0.527 Sum_probs=20.6
Q ss_pred eEEEEEecCCCcHHHHHHHHHHH
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARK 198 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~ 198 (395)
.+++|+|+.|+|||||++.+..-
T Consensus 48 e~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 47999999999999999998754
No 298
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=94.22 E-value=0.034 Score=50.56 Aligned_cols=28 Identities=29% Similarity=0.427 Sum_probs=24.2
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhcc
Q 047930 174 DVNMLGIYGMGGIGKTTLAKEVARKAEN 201 (395)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 201 (395)
...+|.|+|.+|+||||++..++.....
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~ 131 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAE 131 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4578999999999999999999877654
No 299
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=94.21 E-value=0.095 Score=44.56 Aligned_cols=32 Identities=19% Similarity=0.199 Sum_probs=25.7
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhcccCCCCE
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQ 207 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~ 207 (395)
...|.|.|+.|+||||+++.+.+..... .+..
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~-~~~v 37 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRER-GIEV 37 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTT-TCCE
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHc-CCCc
Confidence 3578999999999999999999887643 3444
No 300
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=94.21 E-value=0.032 Score=45.10 Aligned_cols=23 Identities=17% Similarity=0.378 Sum_probs=20.4
Q ss_pred eEEEEEecCCCcHHHHHHHHHHH
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARK 198 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~ 198 (395)
..|+|+|.+|+|||||...+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999999864
No 301
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=94.20 E-value=0.022 Score=49.98 Aligned_cols=24 Identities=29% Similarity=0.484 Sum_probs=21.2
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHh
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
.+++|+|+.|+|||||.+.+..-.
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 479999999999999999998653
No 302
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=94.19 E-value=0.063 Score=46.01 Aligned_cols=56 Identities=16% Similarity=0.157 Sum_probs=35.0
Q ss_pred CCCceEEEEEecCCCcHHHHHHHHHHHhcc-cCCCCEEEEEEeCCcCCHHHHHHHHHH
Q 047930 172 NPDVNMLGIYGMGGIGKTTLAKEVARKAEN-EKLFDQVIFVEVSQIQDIRKIQGEFAD 228 (395)
Q Consensus 172 ~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~-~~~f~~~~wv~~s~~~~~~~~~~~i~~ 228 (395)
......|.|.|+.|+||||+++.+.+.... . .+..+....-+......+.+++++.
T Consensus 18 ~~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~-g~~v~~~treP~~t~~g~~ir~~l~ 74 (223)
T 3ld9_A 18 GPGSMFITFEGIDGSGKTTQSHLLAEYLSEIY-GVNNVVLTREPGGTLLNESVRNLLF 74 (223)
T ss_dssp -CCCEEEEEECSTTSSHHHHHHHHHHHHHHHH-CGGGEEEEESSCSSHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcc-CceeeEeeeCCCCChHHHHHHHHHh
Confidence 345678999999999999999999987654 3 2343331222333233444555554
No 303
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=94.17 E-value=0.16 Score=56.08 Aligned_cols=84 Identities=23% Similarity=0.273 Sum_probs=58.5
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCccc------cchhhhHHHHH
Q 047930 174 DVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFADKLGLTLHE------ETESGRARSLC 247 (395)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~------~~~~~~~~~l~ 247 (395)
+-++|-|+|+.|+||||||.++......+ =..++|+...+..++.- ++.++.+.+. ......+..+.
T Consensus 1430 rg~~iei~g~~~sGkttl~~~~~a~~~~~--g~~~~~i~~e~~~~~~~-----~~~~Gv~~~~l~~~~p~~~e~~l~~~~ 1502 (1706)
T 3cmw_A 1430 MGRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 1502 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHhc--CCeEEEEecCCCCCHHH-----HHHcCCCHHHeEEeCCCcHHHHHHHHH
Confidence 34789999999999999999998765433 35588998887776543 7778776543 12222334444
Q ss_pred HHHhcCCeEEEEEeCCC
Q 047930 248 NRLKKEKRILVILDNIW 264 (395)
Q Consensus 248 ~~l~~~kr~LlVlDdv~ 264 (395)
..++.+..-++|+|-|.
T Consensus 1503 ~~~~s~~~~~vvvDsv~ 1519 (1706)
T 3cmw_A 1503 ALARSGAVDVIVVDSVA 1519 (1706)
T ss_dssp HHHHHTCCSEEEESCST
T ss_pred HHHHcCCCCEEEEccHH
Confidence 44455677799999984
No 304
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=94.17 E-value=0.028 Score=50.03 Aligned_cols=42 Identities=24% Similarity=0.328 Sum_probs=29.2
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhcccC-C-------CCEEEEEEeCCc
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARKAENEK-L-------FDQVIFVEVSQI 216 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~-~-------f~~~~wv~~s~~ 216 (395)
-.++.|+|++|+|||||+.++........ . -..++|++....
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~~ 79 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDP 79 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSC
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCCC
Confidence 35799999999999999999986543210 0 124667776553
No 305
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=94.14 E-value=0.037 Score=48.04 Aligned_cols=25 Identities=28% Similarity=0.339 Sum_probs=22.5
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHh
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
...|+|.|..|+||||+++.+.+..
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 4579999999999999999999875
No 306
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=94.14 E-value=0.032 Score=53.53 Aligned_cols=28 Identities=32% Similarity=0.474 Sum_probs=24.1
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhcc
Q 047930 174 DVNMLGIYGMGGIGKTTLAKEVARKAEN 201 (395)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 201 (395)
...+++|+|..|+|||||++.+......
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~ 319 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQ 319 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhh
Confidence 4579999999999999999999876543
No 307
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=94.14 E-value=0.028 Score=51.83 Aligned_cols=23 Identities=43% Similarity=0.501 Sum_probs=20.8
Q ss_pred eEEEEEecCCCcHHHHHHHHHHH
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARK 198 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~ 198 (395)
.+++|+|+.|+|||||.+.+.--
T Consensus 31 e~~~llGpsGsGKSTLLr~iaGl 53 (359)
T 3fvq_A 31 EILFIIGASGCGKTTLLRCLAGF 53 (359)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCchHHHHHHHHhcC
Confidence 47999999999999999999864
No 308
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=94.12 E-value=0.026 Score=46.60 Aligned_cols=22 Identities=41% Similarity=0.528 Sum_probs=19.5
Q ss_pred EEEEEecCCCcHHHHHHHHHHH
Q 047930 177 MLGIYGMGGIGKTTLAKEVARK 198 (395)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~ 198 (395)
-|+|+|.+|+|||||+..+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998763
No 309
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=94.11 E-value=0.036 Score=44.22 Aligned_cols=24 Identities=25% Similarity=0.412 Sum_probs=20.8
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHh
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
+-|.++|.+|+|||||+..+....
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 458899999999999999998653
No 310
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=94.09 E-value=0.17 Score=49.01 Aligned_cols=50 Identities=8% Similarity=0.117 Sum_probs=35.4
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHHH
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFAD 228 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 228 (395)
.++.|.|.+|+|||||+.+++.+...+. =..++|++... +..++...++.
T Consensus 243 ~l~li~G~pG~GKT~lal~~a~~~a~~~-g~~vl~~s~E~--s~~~l~~r~~~ 292 (503)
T 1q57_A 243 EVIMVTSGSGMVMSTFVRQQALQWGTAM-GKKVGLAMLEE--SVEETAEDLIG 292 (503)
T ss_dssp CEEEEEESSCHHHHHHHHHHHHHHTTTS-CCCEEEEESSS--CHHHHHHHHHH
T ss_pred eEEEEeecCCCCchHHHHHHHHHHHHhc-CCcEEEEeccC--CHHHHHHHHHH
Confidence 5788999999999999999998765431 12477777644 45566665543
No 311
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=94.08 E-value=0.029 Score=44.78 Aligned_cols=23 Identities=30% Similarity=0.611 Sum_probs=20.3
Q ss_pred EEEEEecCCCcHHHHHHHHHHHh
Q 047930 177 MLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
-|.++|.+|+|||||+..+....
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47899999999999999998754
No 312
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=94.07 E-value=0.036 Score=47.89 Aligned_cols=26 Identities=31% Similarity=0.378 Sum_probs=22.8
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHh
Q 047930 174 DVNMLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
...+|+|.|+.|+||||+++.+....
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45689999999999999999998754
No 313
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=94.02 E-value=0.052 Score=52.55 Aligned_cols=43 Identities=5% Similarity=-0.108 Sum_probs=31.9
Q ss_pred chHHHHHHHHHHhc--CCCceEEEEEecCCCcHHHHHHHHHHHhc
Q 047930 158 SRMSTLNDILDALK--NPDVNMLGIYGMGGIGKTTLAKEVARKAE 200 (395)
Q Consensus 158 gr~~~~~~l~~~l~--~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (395)
.|.+..+.+.+... ..+..+|.+.|++|+||||+++.+.....
T Consensus 376 ~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~ 420 (511)
T 1g8f_A 376 SYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFL 420 (511)
T ss_dssp SCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHT
T ss_pred cChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHHH
Confidence 44444555555542 23457899999999999999999999875
No 314
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=94.01 E-value=0.083 Score=48.60 Aligned_cols=30 Identities=30% Similarity=0.460 Sum_probs=25.3
Q ss_pred cCCCceEEEEEecCCCcHHHHHHHHHHHhc
Q 047930 171 KNPDVNMLGIYGMGGIGKTTLAKEVARKAE 200 (395)
Q Consensus 171 ~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (395)
.+...+++.+.|.||+||||+|..++....
T Consensus 14 ~~~~~~i~~~~gkGGvGKTt~a~~lA~~la 43 (348)
T 3io3_A 14 QHDSLKWIFVGGKGGVGKTTTSSSVAVQLA 43 (348)
T ss_dssp TCTTCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred cCCCcEEEEEeCCCCCcHHHHHHHHHHHHH
Confidence 355678999999999999999999887654
No 315
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=93.98 E-value=0.037 Score=45.52 Aligned_cols=24 Identities=21% Similarity=0.371 Sum_probs=21.0
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHh
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
.+.+|+|+.|+|||||+..++--.
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CcEEEECCCCCCHHHHHHHHHHHH
Confidence 478999999999999999987643
No 316
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=93.97 E-value=0.036 Score=51.59 Aligned_cols=27 Identities=30% Similarity=0.230 Sum_probs=23.3
Q ss_pred CCceEEEEEecCCCcHHHHHHHHHHHh
Q 047930 173 PDVNMLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 173 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
+...+++|+|+.|+|||||++.+....
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 445689999999999999999999754
No 317
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=93.93 E-value=0.037 Score=51.67 Aligned_cols=24 Identities=33% Similarity=0.569 Sum_probs=21.8
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHh
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
++|+|.|+.|+|||||+..++...
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHHC
Confidence 578999999999999999998764
No 318
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=93.88 E-value=0.028 Score=49.58 Aligned_cols=23 Identities=35% Similarity=0.459 Sum_probs=20.6
Q ss_pred eEEEEEecCCCcHHHHHHHHHHH
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARK 198 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~ 198 (395)
.+++|+|+.|+|||||.+.++.-
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999998754
No 319
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=93.88 E-value=0.036 Score=44.53 Aligned_cols=24 Identities=17% Similarity=0.401 Sum_probs=20.8
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHh
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
--|.|+|.+|+|||||+..+....
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEEECcCCCCHHHHHHHHHcCC
Confidence 457899999999999999998753
No 320
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=93.87 E-value=0.18 Score=49.05 Aligned_cols=47 Identities=23% Similarity=0.458 Sum_probs=34.6
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCc-CCHHHHHHHH
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQI-QDIRKIQGEF 226 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i 226 (395)
.-++|.|..|+|||+|+.++.+... -+.++++-+.+. ....++++++
T Consensus 233 qr~~Ifgg~g~GKT~L~~~ia~~~~----~~v~V~~~iGER~~Ev~e~~~~~ 280 (600)
T 3vr4_A 233 GAAAVPGPFGAGKTVVQHQIAKWSD----VDLVVYVGCGERGNEMTDVVNEF 280 (600)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHSS----CSEEEEEEEEECHHHHHHHHHHT
T ss_pred CEEeeecCCCccHHHHHHHHHhccC----CCEEEEEEecccHHHHHHHHHHH
Confidence 4588999999999999999988643 356788888765 3344555443
No 321
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=93.86 E-value=0.045 Score=48.20 Aligned_cols=37 Identities=27% Similarity=0.519 Sum_probs=27.5
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeC
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVS 214 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s 214 (395)
++|+|.|-||+||||++..+......++ ..++-+...
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~~G--~~VlliD~D 38 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAMG--KTIMVVGCD 38 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTTT--CCEEEEEEC
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHHCC--CcEEEEcCC
Confidence 5788899999999999999998765432 235555553
No 322
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=93.85 E-value=0.35 Score=41.70 Aligned_cols=22 Identities=27% Similarity=0.120 Sum_probs=19.3
Q ss_pred EEEEecCCCcHHHHHHHHHHHh
Q 047930 178 LGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 178 i~I~G~~GiGKTtLa~~v~~~~ 199 (395)
+.|+|+.|.|||.++..+....
T Consensus 111 ~ll~~~tG~GKT~~a~~~~~~~ 132 (237)
T 2fz4_A 111 GCIVLPTGSGKTHVAMAAINEL 132 (237)
T ss_dssp EEEEESSSTTHHHHHHHHHHHS
T ss_pred EEEEeCCCCCHHHHHHHHHHHc
Confidence 7789999999999999887764
No 323
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=93.85 E-value=0.03 Score=46.90 Aligned_cols=25 Identities=28% Similarity=0.319 Sum_probs=21.7
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHh
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
-+.|.|.|++|+||||||..+....
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhC
Confidence 3568899999999999999998753
No 324
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=93.85 E-value=0.025 Score=48.78 Aligned_cols=25 Identities=28% Similarity=0.193 Sum_probs=22.1
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHH
Q 047930 174 DVNMLGIYGMGGIGKTTLAKEVARK 198 (395)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~ 198 (395)
...+|+|.|+.|+||||+++.+...
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 3468999999999999999998765
No 325
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=93.83 E-value=0.038 Score=45.48 Aligned_cols=23 Identities=17% Similarity=0.378 Sum_probs=20.7
Q ss_pred eEEEEEecCCCcHHHHHHHHHHH
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARK 198 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~ 198 (395)
..|+++|.+|+|||||...+...
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999874
No 326
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=93.82 E-value=0.1 Score=50.01 Aligned_cols=88 Identities=17% Similarity=0.251 Sum_probs=51.3
Q ss_pred EEEEEecCCCcHHHHH-HHHHHHhcc----cCCCC-EEEEEEeCCcC-CHHHHHHHHHHHhCCC--------ccccchhh
Q 047930 177 MLGIYGMGGIGKTTLA-KEVARKAEN----EKLFD-QVIFVEVSQIQ-DIRKIQGEFADKLGLT--------LHEETESG 241 (395)
Q Consensus 177 vi~I~G~~GiGKTtLa-~~v~~~~~~----~~~f~-~~~wv~~s~~~-~~~~~~~~i~~~l~~~--------~~~~~~~~ 241 (395)
-++|.|..|+|||+|| ..+.+.... .++-+ .++++-+.+.. ...++.+++...-... .++.....
T Consensus 164 R~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~~r 243 (510)
T 2ck3_A 164 RELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQ 243 (510)
T ss_dssp BCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCGGGEEEEEECTTSCHHHH
T ss_pred EEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCCcccceEEEECCCCCHHHH
Confidence 4789999999999994 566665542 11233 47788887654 4566666665532111 11111110
Q ss_pred -----hHHHHHHHHh-cCCeEEEEEeCCC
Q 047930 242 -----RARSLCNRLK-KEKRILVILDNIW 264 (395)
Q Consensus 242 -----~~~~l~~~l~-~~kr~LlVlDdv~ 264 (395)
..-.+-+++. +++..||++||+.
T Consensus 244 ~~a~~~a~tiAEyfrd~G~dVLli~Dslt 272 (510)
T 2ck3_A 244 YLAPYSGCSMGEYFRDNGKHALIIYDDLS 272 (510)
T ss_dssp HHHHHHHHHHHHHHHTTTCEEEEEEETHH
T ss_pred HHHHHHHHHHHHHHHHcCCcEEEEEcCHH
Confidence 1123344443 4899999999984
No 327
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=93.81 E-value=0.034 Score=51.24 Aligned_cols=23 Identities=39% Similarity=0.645 Sum_probs=20.7
Q ss_pred eEEEEEecCCCcHHHHHHHHHHH
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARK 198 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~ 198 (395)
.+++|+|+.|+|||||.+.++--
T Consensus 42 e~~~llGpnGsGKSTLLr~iaGl 64 (355)
T 1z47_A 42 EMVGLLGPSGSGKTTILRLIAGL 64 (355)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 57999999999999999999854
No 328
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=93.79 E-value=0.083 Score=50.62 Aligned_cols=84 Identities=18% Similarity=0.303 Sum_probs=48.2
Q ss_pred EEEEEecCCCcHHHHH-HHHHHHhcccCCCC-EEEEEEeCCcC-CHHHHHHHHHHHhCC--------Cccccchhh----
Q 047930 177 MLGIYGMGGIGKTTLA-KEVARKAENEKLFD-QVIFVEVSQIQ-DIRKIQGEFADKLGL--------TLHEETESG---- 241 (395)
Q Consensus 177 vi~I~G~~GiGKTtLa-~~v~~~~~~~~~f~-~~~wv~~s~~~-~~~~~~~~i~~~l~~--------~~~~~~~~~---- 241 (395)
-++|.|..|+|||+|| ..+.+... -+ .++++-+.+.. ...++.+++...-.. ..++.....
T Consensus 165 R~~Ifg~~g~GKT~Lal~~I~~~~~----~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r~~a~ 240 (507)
T 1fx0_A 165 RELIIGDRQTGKTAVATDTILNQQG----QNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQYLAP 240 (507)
T ss_dssp BCBEEESSSSSHHHHHHHHHHTCCT----TTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTTHHH
T ss_pred EEEEecCCCCCccHHHHHHHHHhhc----CCcEEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHHHHHHH
Confidence 4789999999999995 56666542 34 35777777654 345555555432110 011111111
Q ss_pred -hHHHHHHHHh-cCCeEEEEEeCCC
Q 047930 242 -RARSLCNRLK-KEKRILVILDNIW 264 (395)
Q Consensus 242 -~~~~l~~~l~-~~kr~LlVlDdv~ 264 (395)
..-.+-+++. +++..||++||+.
T Consensus 241 ~~a~tiAEyfrd~G~dVLli~Dslt 265 (507)
T 1fx0_A 241 YTGAALAEYFMYRERHTLIIYDDLS 265 (507)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEECHH
T ss_pred HHHHHHHHHHHHcCCcEEEEEecHH
Confidence 1223333332 4899999999973
No 329
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=93.76 E-value=0.047 Score=45.17 Aligned_cols=26 Identities=23% Similarity=0.169 Sum_probs=22.2
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHh
Q 047930 174 DVNMLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
....|+|+|.+|+|||||...+....
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44578899999999999999998753
No 330
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.76 E-value=0.068 Score=43.99 Aligned_cols=33 Identities=27% Similarity=0.310 Sum_probs=25.2
Q ss_pred HHHHHhcCCCceEEEEEecCCCcHHHHHHHHHHH
Q 047930 165 DILDALKNPDVNMLGIYGMGGIGKTTLAKEVARK 198 (395)
Q Consensus 165 ~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 198 (395)
.+.. +...+..-|.|+|..|+|||||...+...
T Consensus 7 ~~~~-~~~~~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 7 RIWR-LFNHQEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp HHHH-HHTTSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred HHHH-hcCCCccEEEEECCCCCCHHHHHHHHhcC
Confidence 3444 33445567889999999999999999854
No 331
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.75 E-value=0.048 Score=44.61 Aligned_cols=33 Identities=27% Similarity=0.353 Sum_probs=24.6
Q ss_pred HHHHHhcC-CCceEEEEEecCCCcHHHHHHHHHH
Q 047930 165 DILDALKN-PDVNMLGIYGMGGIGKTTLAKEVAR 197 (395)
Q Consensus 165 ~l~~~l~~-~~~~vi~I~G~~GiGKTtLa~~v~~ 197 (395)
++...+.. ....-|.|+|..|+|||||...+..
T Consensus 7 ~~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 7 SMFDKLWGSNKELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp HHHGGGTTCSSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred HHHHHhcCCCCccEEEEECCCCCCHHHHHHHHhc
Confidence 34443444 4556788999999999999998874
No 332
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=93.75 E-value=0.032 Score=50.75 Aligned_cols=26 Identities=27% Similarity=0.417 Sum_probs=22.8
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHh
Q 047930 174 DVNMLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
..++++|+|+.|+|||||.+.+....
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cccEEEEEecCCCCHHHHHHHHHhhc
Confidence 46789999999999999999998653
No 333
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=93.73 E-value=0.036 Score=51.19 Aligned_cols=24 Identities=33% Similarity=0.508 Sum_probs=21.1
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHH
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARK 198 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~ 198 (395)
-.+++|+|+.|+|||||++.+..-
T Consensus 54 Gei~~IiGpnGaGKSTLlr~i~GL 77 (366)
T 3tui_C 54 GQIYGVIGASGAGKSTLIRCVNLL 77 (366)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCEEEEEcCCCchHHHHHHHHhcC
Confidence 357999999999999999998764
No 334
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=93.72 E-value=0.061 Score=44.15 Aligned_cols=26 Identities=31% Similarity=0.417 Sum_probs=22.0
Q ss_pred CCceEEEEEecCCCcHHHHHHHHHHH
Q 047930 173 PDVNMLGIYGMGGIGKTTLAKEVARK 198 (395)
Q Consensus 173 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 198 (395)
....-|.|+|.+|+|||||...+...
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcC
Confidence 34567889999999999999998754
No 335
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=93.71 E-value=0.044 Score=44.56 Aligned_cols=25 Identities=28% Similarity=0.325 Sum_probs=21.8
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHH
Q 047930 174 DVNMLGIYGMGGIGKTTLAKEVARK 198 (395)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~ 198 (395)
+...|.|+|.+|+|||||...+...
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567889999999999999999864
No 336
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=93.71 E-value=0.036 Score=51.50 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=20.8
Q ss_pred eEEEEEecCCCcHHHHHHHHHHH
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARK 198 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~ 198 (395)
.+++|+|+.|+|||||.+.+.--
T Consensus 30 e~~~llGpsGsGKSTLLr~iaGl 52 (381)
T 3rlf_A 30 EFVVFVGPSGCGKSTLLRMIAGL 52 (381)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTS
T ss_pred CEEEEEcCCCchHHHHHHHHHcC
Confidence 57999999999999999999864
No 337
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=93.70 E-value=0.033 Score=49.90 Aligned_cols=24 Identities=29% Similarity=0.465 Sum_probs=21.2
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHh
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
.+++|+|+.|+|||||.+.+..-.
T Consensus 65 e~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 65 QLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp CEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 579999999999999999997643
No 338
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=93.68 E-value=0.037 Score=51.09 Aligned_cols=23 Identities=30% Similarity=0.393 Sum_probs=20.7
Q ss_pred eEEEEEecCCCcHHHHHHHHHHH
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARK 198 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~ 198 (395)
.+++|+|+.|+|||||.+.++--
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 30 EFVALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEEcCCCchHHHHHHHHHCC
Confidence 57999999999999999999864
No 339
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=93.66 E-value=0.099 Score=47.80 Aligned_cols=31 Identities=26% Similarity=0.378 Sum_probs=25.4
Q ss_pred cCCCceEEEEEecCCCcHHHHHHHHHHHhcc
Q 047930 171 KNPDVNMLGIYGMGGIGKTTLAKEVARKAEN 201 (395)
Q Consensus 171 ~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 201 (395)
.+...+++.+.|.||+||||+|..++.....
T Consensus 12 ~~~~~~i~~~sgkGGvGKTt~a~~lA~~la~ 42 (334)
T 3iqw_A 12 DQRSLRWIFVGGKGGVGKTTTSCSLAIQLAK 42 (334)
T ss_dssp HCTTCCEEEEECSTTSSHHHHHHHHHHHHTT
T ss_pred cCCCeEEEEEeCCCCccHHHHHHHHHHHHHh
Confidence 3455678889999999999999999877653
No 340
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=93.66 E-value=0.038 Score=51.12 Aligned_cols=23 Identities=30% Similarity=0.505 Sum_probs=20.8
Q ss_pred eEEEEEecCCCcHHHHHHHHHHH
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARK 198 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~ 198 (395)
.+++|+|+.|+|||||.+.++--
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl 52 (362)
T 2it1_A 30 EFMALLGPSGSGKSTLLYTIAGI 52 (362)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCchHHHHHHHHhcC
Confidence 57999999999999999999864
No 341
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.63 E-value=0.05 Score=46.09 Aligned_cols=27 Identities=22% Similarity=0.167 Sum_probs=22.8
Q ss_pred CCceEEEEEecCCCcHHHHHHHHHHHh
Q 047930 173 PDVNMLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 173 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
.....|.|+|.+|+|||||+..+....
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345678899999999999999998764
No 342
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=93.63 E-value=0.041 Score=45.42 Aligned_cols=23 Identities=30% Similarity=0.611 Sum_probs=20.5
Q ss_pred EEEEEecCCCcHHHHHHHHHHHh
Q 047930 177 MLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
-|.++|.+|+|||||+..+....
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 57899999999999999998754
No 343
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=93.61 E-value=0.045 Score=43.81 Aligned_cols=22 Identities=23% Similarity=0.344 Sum_probs=19.7
Q ss_pred EEEEecCCCcHHHHHHHHHHHh
Q 047930 178 LGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 178 i~I~G~~GiGKTtLa~~v~~~~ 199 (395)
|.++|.+|+|||||...+....
T Consensus 3 i~~~G~~~~GKssl~~~l~~~~ 24 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLGE 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 7899999999999999998654
No 344
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=93.61 E-value=0.048 Score=50.37 Aligned_cols=113 Identities=12% Similarity=0.097 Sum_probs=57.7
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCccccchhhhHHHHHHHHhcC
Q 047930 174 DVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFADKLGLTLHEETESGRARSLCNRLKKE 253 (395)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 253 (395)
...+++|+|+.|+|||||.+.+....... ....+ +++.++.... .......+...............+...|. .
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~~~~~--~~~~i-~t~ed~~e~~--~~~~~~~v~q~~~~~~~~~~~~~La~aL~-~ 195 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDYLNNT--KYHHI-LTIEDPIEFV--HESKKCLVNQREVHRDTLGFSEALRSALR-E 195 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHHHH--CCCEE-EEEESSCCSC--CCCSSSEEEEEEBTTTBSCHHHHHHHHTT-S
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcccCC--CCcEE-EEccCcHHhh--hhccccceeeeeeccccCCHHHHHHHHhh-h
Confidence 34589999999999999999987754322 11122 1222211100 00000000000000011122334555555 5
Q ss_pred CeEEEEEeCCCCccccchhccccCCCCCCcEEEEeecchhhh
Q 047930 254 KRILVILDNIWENLDFQAVGIPHGDGHKGSKVLLTARSLDVL 295 (395)
Q Consensus 254 kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iivTtR~~~va 295 (395)
.+=+|++|++.+.+.+..+.... ..|..||+|+...+.+
T Consensus 196 ~PdvillDEp~d~e~~~~~~~~~---~~G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 196 DPDIILVGEMRDLETIRLALTAA---ETGHLVFGTLHTTSAA 234 (356)
T ss_dssp CCSEEEESCCCSHHHHHHHHHHH---HTTCEEEEEESCSSHH
T ss_pred CcCEEecCCCCCHHHHHHHHHHH---hcCCEEEEEEccChHH
Confidence 67788999998766555432221 2355688888876553
No 345
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=93.61 E-value=0.039 Score=44.19 Aligned_cols=24 Identities=25% Similarity=0.476 Sum_probs=20.9
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHh
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
.-|.++|.+|+|||||...+....
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCc
Confidence 457899999999999999998754
No 346
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=93.58 E-value=0.063 Score=45.92 Aligned_cols=37 Identities=19% Similarity=0.087 Sum_probs=26.4
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeC
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVS 214 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s 214 (395)
-.|.+.|.||+||||++..+......+. ++ +..+.+.
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G-~~-V~v~d~D 43 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQG-VR-VMAGVVE 43 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTT-CC-EEEEECC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCC-CC-EEEEEeC
Confidence 3477899999999999999988765442 33 3444443
No 347
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=93.58 E-value=0.046 Score=45.93 Aligned_cols=28 Identities=25% Similarity=0.265 Sum_probs=21.6
Q ss_pred CCCceEEEEEecCCCcHHHHHHHHHHHh
Q 047930 172 NPDVNMLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 172 ~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
..+.--|.|+|..|+|||||...+.+..
T Consensus 27 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~ 54 (204)
T 4gzl_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTNA 54 (204)
T ss_dssp ---CEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred cCCeEEEEEECcCCCCHHHHHHHHHhCC
Confidence 3445567899999999999999988754
No 348
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=93.57 E-value=0.029 Score=50.69 Aligned_cols=24 Identities=29% Similarity=0.412 Sum_probs=21.0
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHH
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARK 198 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~ 198 (395)
-.+++|+|+.|+|||||++.+..-
T Consensus 80 Ge~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 80 GQTLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp TCEEEEESSSCHHHHHHHHHHTTS
T ss_pred CCEEEEECCCCchHHHHHHHHHcC
Confidence 357999999999999999998753
No 349
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=93.57 E-value=0.04 Score=51.22 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=20.7
Q ss_pred eEEEEEecCCCcHHHHHHHHHHH
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARK 198 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~ 198 (395)
.+++|+|+.|+|||||.+.++--
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl 52 (372)
T 1g29_1 30 EFMILLGPSGCGKTTTLRMIAGL 52 (372)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCcHHHHHHHHHHcC
Confidence 47999999999999999999854
No 350
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=93.55 E-value=0.04 Score=51.14 Aligned_cols=23 Identities=35% Similarity=0.458 Sum_probs=20.7
Q ss_pred eEEEEEecCCCcHHHHHHHHHHH
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARK 198 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~ 198 (395)
.+++|+|+.|+|||||.+.++--
T Consensus 38 e~~~llGpnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 38 EFLVLLGPSGCGKTTTLRMIAGL 60 (372)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCChHHHHHHHHHcC
Confidence 57999999999999999999853
No 351
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=93.54 E-value=0.22 Score=47.60 Aligned_cols=84 Identities=19% Similarity=0.286 Sum_probs=49.7
Q ss_pred EEEEEecCCCcHHHHH-HHHHHHhcccCCCC-EEEEEEeCCcC-CHHHHHHHHHHHhCCC--------ccccchhh----
Q 047930 177 MLGIYGMGGIGKTTLA-KEVARKAENEKLFD-QVIFVEVSQIQ-DIRKIQGEFADKLGLT--------LHEETESG---- 241 (395)
Q Consensus 177 vi~I~G~~GiGKTtLa-~~v~~~~~~~~~f~-~~~wv~~s~~~-~~~~~~~~i~~~l~~~--------~~~~~~~~---- 241 (395)
-++|.|..|+|||+|+ ..+.+... -+ .++++-+.+.. ...++.+++.+.-... .++.....
T Consensus 164 R~~Ifg~~g~GKT~l~l~~I~n~~~----~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tvvV~atad~p~~~r~~a~ 239 (513)
T 3oaa_A 164 RELIIGDRQTGKTALAIDAIINQRD----SGIKCIYVAIGQKASTISNVVRKLEEHGALANTIVVVATASESAALQYLAP 239 (513)
T ss_dssp BCEEEESSSSSHHHHHHHHHHTTSS----SSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTEEEEEECTTSCHHHHHHHH
T ss_pred EEEeecCCCCCcchHHHHHHHhhcc----CCceEEEEEecCChHHHHHHHHHHhhcCcccceEEEEECCCCChHHHHHHH
Confidence 4789999999999996 56665422 33 36788887654 4566667665542111 01111100
Q ss_pred -hHHHHHHHHh-cCCeEEEEEeCCC
Q 047930 242 -RARSLCNRLK-KEKRILVILDNIW 264 (395)
Q Consensus 242 -~~~~l~~~l~-~~kr~LlVlDdv~ 264 (395)
..-.+-+++. +++..||++||+.
T Consensus 240 ~~a~tiAEyfrd~G~dVLli~Dslt 264 (513)
T 3oaa_A 240 YAGCAMGEYFRDRGEDALIIYDDLS 264 (513)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEETHH
T ss_pred HHHHHHHHHHHhcCCCEEEEecChH
Confidence 1112333332 4899999999984
No 352
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=93.53 E-value=1.3 Score=40.62 Aligned_cols=26 Identities=27% Similarity=0.400 Sum_probs=22.5
Q ss_pred CCceEEEEEecCCCcHHHHHHHHHHH
Q 047930 173 PDVNMLGIYGMGGIGKTTLAKEVARK 198 (395)
Q Consensus 173 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 198 (395)
.+...++++|.+|+|||||...+...
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~ 190 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTA 190 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35568999999999999999998765
No 353
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=93.52 E-value=0.045 Score=43.85 Aligned_cols=23 Identities=30% Similarity=0.583 Sum_probs=20.3
Q ss_pred EEEEEecCCCcHHHHHHHHHHHh
Q 047930 177 MLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
-|.|+|.+|+|||||...+.+..
T Consensus 5 ki~v~G~~~~GKssli~~l~~~~ 27 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQGI 27 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999998753
No 354
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=93.52 E-value=0.089 Score=46.22 Aligned_cols=37 Identities=22% Similarity=0.310 Sum_probs=28.4
Q ss_pred HHHHHHHhcCC--CceEEEEEecCCCcHHHHHHHHHHHh
Q 047930 163 LNDILDALKNP--DVNMLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 163 ~~~l~~~l~~~--~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
..-+..|+... ....+.++|++|+|||++|..+++..
T Consensus 90 ~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 90 ASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp HHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred HHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhh
Confidence 34466676643 24579999999999999999999853
No 355
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=93.50 E-value=0.042 Score=44.46 Aligned_cols=23 Identities=39% Similarity=0.466 Sum_probs=20.2
Q ss_pred eEEEEEecCCCcHHHHHHHHHHH
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARK 198 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~ 198 (395)
--|.|+|.+|+|||||+..+...
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEECCCCccHHHHHHHHhcC
Confidence 45889999999999999998764
No 356
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.49 E-value=0.042 Score=44.15 Aligned_cols=23 Identities=17% Similarity=0.368 Sum_probs=20.3
Q ss_pred EEEEEecCCCcHHHHHHHHHHHh
Q 047930 177 MLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
-|.++|..|+|||||...+....
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998764
No 357
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=93.48 E-value=0.041 Score=44.28 Aligned_cols=24 Identities=25% Similarity=0.356 Sum_probs=20.8
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHh
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
--|.|+|.+|+|||||...+....
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 457899999999999999998653
No 358
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=93.48 E-value=0.043 Score=45.15 Aligned_cols=24 Identities=25% Similarity=0.290 Sum_probs=20.9
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHh
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
--|.|+|.+|+|||||+..+....
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 457899999999999999998754
No 359
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=93.46 E-value=0.025 Score=56.17 Aligned_cols=23 Identities=26% Similarity=0.326 Sum_probs=20.5
Q ss_pred EEEEEecCCCcHHHHHHHHHHHh
Q 047930 177 MLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
.+.++|++|+|||+||+.+++..
T Consensus 329 ~vLL~GppGtGKT~LAr~la~~~ 351 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISRVA 351 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSSTTC
T ss_pred ceEEECCCchHHHHHHHHHHHhC
Confidence 58899999999999999988654
No 360
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=93.46 E-value=0.047 Score=43.66 Aligned_cols=23 Identities=26% Similarity=0.547 Sum_probs=20.2
Q ss_pred EEEEEecCCCcHHHHHHHHHHHh
Q 047930 177 MLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
-|.|+|..|+|||||...+....
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 57899999999999999988654
No 361
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=93.46 E-value=0.043 Score=44.76 Aligned_cols=23 Identities=26% Similarity=0.319 Sum_probs=20.3
Q ss_pred eEEEEEecCCCcHHHHHHHHHHH
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARK 198 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~ 198 (395)
..|+|+|.+|+|||||...+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35789999999999999999865
No 362
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=93.43 E-value=0.16 Score=42.57 Aligned_cols=51 Identities=18% Similarity=0.176 Sum_probs=33.6
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHHHH
Q 047930 177 MLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFADK 229 (395)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 229 (395)
.|+|-|.-|+||||.++.+++....++ . .+++..-+......+..++++..
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g-~-~v~~treP~~t~~~~~ir~~l~~ 52 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRG-K-KVILKREPGGTETGEKIRKILLE 52 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTT-C-CEEEEESSCSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC-C-cEEEEECCCCCcHHHHHHHHhhc
Confidence 478889999999999999998876542 2 23444444433445555555543
No 363
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=93.42 E-value=0.043 Score=44.10 Aligned_cols=23 Identities=17% Similarity=0.398 Sum_probs=20.5
Q ss_pred EEEEEecCCCcHHHHHHHHHHHh
Q 047930 177 MLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
-|.|+|..|+|||||...+....
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 57899999999999999998764
No 364
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=93.41 E-value=0.047 Score=45.06 Aligned_cols=24 Identities=25% Similarity=0.272 Sum_probs=20.6
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHh
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
--|+|+|.+|+|||||+..+.+..
T Consensus 21 ~ki~ivG~~~vGKSsL~~~~~~~~ 44 (184)
T 3ihw_A 21 LKVGIVGNLSSGKSALVHRYLTGT 44 (184)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 457899999999999999887754
No 365
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=93.40 E-value=0.056 Score=44.76 Aligned_cols=25 Identities=12% Similarity=0.411 Sum_probs=21.8
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHH
Q 047930 174 DVNMLGIYGMGGIGKTTLAKEVARK 198 (395)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~ 198 (395)
+...|.|+|..|+|||||...+...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567889999999999999999865
No 366
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=93.39 E-value=0.076 Score=44.33 Aligned_cols=24 Identities=29% Similarity=0.385 Sum_probs=20.4
Q ss_pred CceEEEEEecCCCcHHHHHHHHHH
Q 047930 174 DVNMLGIYGMGGIGKTTLAKEVAR 197 (395)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~ 197 (395)
+..-|+++|.+|+|||||...+..
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 344678999999999999999865
No 367
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=93.38 E-value=0.045 Score=43.92 Aligned_cols=21 Identities=29% Similarity=0.488 Sum_probs=18.5
Q ss_pred EEEEEecCCCcHHHHHHHHHH
Q 047930 177 MLGIYGMGGIGKTTLAKEVAR 197 (395)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~ 197 (395)
-|.|+|.+|+|||||...+.+
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 478999999999999998864
No 368
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=93.38 E-value=0.044 Score=44.64 Aligned_cols=26 Identities=27% Similarity=0.429 Sum_probs=21.9
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHh
Q 047930 174 DVNMLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
...-|.|+|.+|+|||||...+....
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCc
Confidence 34568899999999999999988754
No 369
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=93.37 E-value=0.034 Score=51.14 Aligned_cols=23 Identities=30% Similarity=0.345 Sum_probs=20.8
Q ss_pred eEEEEEecCCCcHHHHHHHHHHH
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARK 198 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~ 198 (395)
.+++|+|+.|+|||||.+.++--
T Consensus 27 e~~~llGpnGsGKSTLLr~iaGl 49 (348)
T 3d31_A 27 EYFVILGPTGAGKTLFLELIAGF 49 (348)
T ss_dssp CEEEEECCCTHHHHHHHHHHHTS
T ss_pred CEEEEECCCCccHHHHHHHHHcC
Confidence 47999999999999999999864
No 370
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=93.36 E-value=0.056 Score=50.89 Aligned_cols=24 Identities=21% Similarity=0.354 Sum_probs=21.9
Q ss_pred CceEEEEEecCCCcHHHHHHHHHH
Q 047930 174 DVNMLGIYGMGGIGKTTLAKEVAR 197 (395)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~ 197 (395)
...+++|+|+.|+|||||.+.+..
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHhC
Confidence 456899999999999999999987
No 371
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=93.36 E-value=0.094 Score=48.31 Aligned_cols=26 Identities=23% Similarity=0.299 Sum_probs=23.0
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHh
Q 047930 174 DVNMLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
+..+|+|+|.+|+|||||...+....
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 46799999999999999999998754
No 372
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=93.34 E-value=0.044 Score=44.11 Aligned_cols=22 Identities=27% Similarity=0.727 Sum_probs=19.8
Q ss_pred EEEEEecCCCcHHHHHHHHHHH
Q 047930 177 MLGIYGMGGIGKTTLAKEVARK 198 (395)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~ 198 (395)
-|.|+|.+|+|||||...+...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999864
No 373
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=93.31 E-value=0.06 Score=48.08 Aligned_cols=37 Identities=30% Similarity=0.519 Sum_probs=27.4
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeC
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVS 214 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s 214 (395)
++|+|.|.||+||||+|.++......++ ..++-+...
T Consensus 3 kvIavs~KGGvGKTT~a~nLA~~La~~G--~rVlliD~D 39 (289)
T 2afh_E 3 RQCAIYGKGGIGKSTTTQNLVAALAEMG--KKVMIVGCD 39 (289)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHHTT--CCEEEEEEC
T ss_pred eEEEEeCCCcCcHHHHHHHHHHHHHHCC--CeEEEEecC
Confidence 6788899999999999999988765432 134555553
No 374
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=93.31 E-value=0.065 Score=52.52 Aligned_cols=27 Identities=30% Similarity=0.386 Sum_probs=23.7
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhc
Q 047930 174 DVNMLGIYGMGGIGKTTLAKEVARKAE 200 (395)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (395)
+-.++.|+|+.|+|||||++.+.....
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L~ 394 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARLM 394 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHhhc
Confidence 346899999999999999999998764
No 375
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=93.29 E-value=0.048 Score=43.86 Aligned_cols=21 Identities=33% Similarity=0.507 Sum_probs=18.7
Q ss_pred EEEEEecCCCcHHHHHHHHHH
Q 047930 177 MLGIYGMGGIGKTTLAKEVAR 197 (395)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~ 197 (395)
-|.|+|.+|+|||||+..+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 478999999999999999863
No 376
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=93.28 E-value=0.054 Score=43.54 Aligned_cols=24 Identities=21% Similarity=0.329 Sum_probs=20.6
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHh
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
--|.|+|..|+|||||...+....
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 357899999999999999998653
No 377
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=93.25 E-value=0.056 Score=44.60 Aligned_cols=25 Identities=16% Similarity=0.351 Sum_probs=21.6
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHh
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
...|.|+|..|+|||||...+....
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 23 KGEVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp TCEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCc
Confidence 4568899999999999999998764
No 378
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=93.24 E-value=0.052 Score=44.04 Aligned_cols=24 Identities=25% Similarity=0.445 Sum_probs=20.8
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHh
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
.-|.|+|.+|+|||||...+....
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 458899999999999999998653
No 379
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=93.22 E-value=0.034 Score=52.78 Aligned_cols=27 Identities=37% Similarity=0.517 Sum_probs=23.2
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhc
Q 047930 174 DVNMLGIYGMGGIGKTTLAKEVARKAE 200 (395)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (395)
...+|.|+|.+|+||||++..+.....
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~ 124 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQ 124 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 356899999999999999999987654
No 380
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=93.22 E-value=0.051 Score=44.14 Aligned_cols=23 Identities=30% Similarity=0.404 Sum_probs=20.2
Q ss_pred eEEEEEecCCCcHHHHHHHHHHH
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARK 198 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~ 198 (395)
--|.|+|.+|+|||||+..+...
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 45789999999999999998865
No 381
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=93.22 E-value=0.048 Score=45.08 Aligned_cols=24 Identities=33% Similarity=0.433 Sum_probs=20.9
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHh
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
--|.|+|.+|+|||||+..+....
T Consensus 22 ~ki~vvG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 22 VNLAILGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCcHHHHHHHHHhCC
Confidence 457899999999999999988754
No 382
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=93.21 E-value=0.051 Score=50.81 Aligned_cols=22 Identities=36% Similarity=0.593 Sum_probs=20.2
Q ss_pred eEEEEEecCCCcHHHHHHHHHH
Q 047930 176 NMLGIYGMGGIGKTTLAKEVAR 197 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~ 197 (395)
.+++|+|+.|+|||||.+.+..
T Consensus 48 e~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 48 QRVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp CEEEEEESTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCChHHHHHHHHhC
Confidence 5799999999999999999975
No 383
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=93.20 E-value=0.071 Score=43.30 Aligned_cols=25 Identities=28% Similarity=0.490 Sum_probs=21.7
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHh
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
..-|.|+|..|+|||||...+....
T Consensus 9 ~~~i~v~G~~~~GKssli~~l~~~~ 33 (181)
T 2fn4_A 9 THKLVVVGGGGVGKSALTIQFIQSY 33 (181)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCc
Confidence 4568899999999999999998763
No 384
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=93.19 E-value=0.088 Score=47.42 Aligned_cols=33 Identities=18% Similarity=0.417 Sum_probs=25.8
Q ss_pred HHHHHHHhcCCCceEEEEEecCCCcHHHHHHHHHHHh
Q 047930 163 LNDILDALKNPDVNMLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 163 ~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
+++|.+.+. -.+++++|+.|+|||||.+.+. ..
T Consensus 156 i~~L~~~l~---G~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 156 IDELVDYLE---GFICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp HHHHHHHTT---TCEEEEECSTTSSHHHHHHHHH-SC
T ss_pred HHHHHhhcc---CcEEEEECCCCCCHHHHHHHHH-Hh
Confidence 455666554 2478999999999999999998 54
No 385
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=93.18 E-value=0.052 Score=46.12 Aligned_cols=24 Identities=33% Similarity=0.430 Sum_probs=21.3
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHh
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
.+|.|.|+.|+||||+++.+....
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 479999999999999999998754
No 386
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=93.18 E-value=0.055 Score=44.84 Aligned_cols=24 Identities=29% Similarity=0.350 Sum_probs=20.5
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHH
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARK 198 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~ 198 (395)
...|+++|.+|+|||||...+.+.
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 346789999999999999999874
No 387
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=93.15 E-value=0.055 Score=43.40 Aligned_cols=24 Identities=21% Similarity=0.340 Sum_probs=20.6
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHh
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
--|.|+|..|+|||||...+....
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKGQ 30 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHcCC
Confidence 357899999999999999998753
No 388
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=93.14 E-value=0.051 Score=50.43 Aligned_cols=26 Identities=23% Similarity=0.327 Sum_probs=22.3
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhc
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARKAE 200 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (395)
...++|+|+.|+|||||++.+.....
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~ 195 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFN 195 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 35789999999999999999987643
No 389
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=93.12 E-value=0.078 Score=49.32 Aligned_cols=109 Identities=14% Similarity=0.114 Sum_probs=55.6
Q ss_pred CCceEEEEEecCCCcHHHHHHHHHHHhcccCCCCE-EEEEEeCCcCCHHHHHHHHHHHhCCCcc---ccchhhhHHHHHH
Q 047930 173 PDVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQ-VIFVEVSQIQDIRKIQGEFADKLGLTLH---EETESGRARSLCN 248 (395)
Q Consensus 173 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~-~~wv~~s~~~~~~~~~~~i~~~l~~~~~---~~~~~~~~~~l~~ 248 (395)
..-.+++|+|+.|+|||||++.+....... ... ++++.-.-.... . ...+.-.. ..........+..
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~~~~~--~~g~I~~~e~~~e~~~----~---~~~~~v~Q~~~g~~~~~~~~~l~~ 204 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDYINQT--KSYHIITIEDPIEYVF----K---HKKSIVNQREVGEDTKSFADALRA 204 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHHHHHH--SCCEEEEEESSCCSCC----C---CSSSEEEEEEBTTTBSCSHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcCcC--CCcEEEEecccHhhhh----c---cCceEEEeeecCCCHHHHHHHHHH
Confidence 345689999999999999999998754321 112 223321110000 0 00000000 0001112334555
Q ss_pred HHhcCCeEEEEEeCCCCccccchhccccCCCCCCcEEEEeecchhh
Q 047930 249 RLKKEKRILVILDNIWENLDFQAVGIPHGDGHKGSKVLLTARSLDV 294 (395)
Q Consensus 249 ~l~~~kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v 294 (395)
.+.. .+=+|++|++.+.+......... ..|..|+.|+...++
T Consensus 205 ~L~~-~pd~illdE~~d~e~~~~~l~~~---~~g~~vi~t~H~~~~ 246 (372)
T 2ewv_A 205 ALRE-DPDVIFVGEMRDLETVETALRAA---ETGHLVFGTLHTNTA 246 (372)
T ss_dssp HTTS-CCSEEEESCCCSHHHHHHHHHHH---TTTCEEEECCCCCSH
T ss_pred Hhhh-CcCEEEECCCCCHHHHHHHHHHH---hcCCEEEEEECcchH
Confidence 5553 56689999997655443322221 235568888776543
No 390
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=93.09 E-value=0.053 Score=44.44 Aligned_cols=24 Identities=25% Similarity=0.346 Sum_probs=21.0
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHh
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
--|.|+|..|+|||||+..+....
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 457899999999999999998764
No 391
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=93.07 E-value=0.032 Score=49.15 Aligned_cols=26 Identities=19% Similarity=0.279 Sum_probs=22.9
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHh
Q 047930 174 DVNMLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
+...|+|.|..|+||||+++.+.+..
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhc
Confidence 45789999999999999999988764
No 392
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=93.03 E-value=0.056 Score=43.87 Aligned_cols=24 Identities=25% Similarity=0.293 Sum_probs=20.6
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHh
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
--|.|+|..|+|||||...+....
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~~ 38 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYDS 38 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 357899999999999999998653
No 393
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=93.03 E-value=0.059 Score=43.73 Aligned_cols=25 Identities=28% Similarity=0.361 Sum_probs=21.6
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHh
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
..-|.|+|..|+|||||...+....
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC
Confidence 3468899999999999999998764
No 394
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=93.03 E-value=0.032 Score=51.44 Aligned_cols=23 Identities=39% Similarity=0.590 Sum_probs=20.7
Q ss_pred eEEEEEecCCCcHHHHHHHHHHH
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARK 198 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~ 198 (395)
.+++|+|+.|+|||||.+.++--
T Consensus 32 e~~~llGpnGsGKSTLLr~iaGl 54 (353)
T 1oxx_K 32 ERFGILGPSGAGKTTFMRIIAGL 54 (353)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 57999999999999999999853
No 395
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=93.02 E-value=0.069 Score=44.95 Aligned_cols=25 Identities=24% Similarity=0.215 Sum_probs=23.0
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhc
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARKAE 200 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (395)
.+|.|.|+.|+||||+++.+.....
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg 31 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYN 31 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhC
Confidence 5899999999999999999998765
No 396
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=93.01 E-value=0.061 Score=44.70 Aligned_cols=23 Identities=35% Similarity=0.420 Sum_probs=19.9
Q ss_pred eEEEEEecCCCcHHHHHHHHHHH
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARK 198 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~ 198 (395)
--|+|+|.+|+|||||...+...
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 35789999999999999998753
No 397
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=92.98 E-value=0.19 Score=49.03 Aligned_cols=26 Identities=27% Similarity=0.302 Sum_probs=22.6
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhc
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARKAE 200 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (395)
-.++.|.|+.|+|||||++.++....
T Consensus 281 G~i~~i~G~~GsGKSTLl~~l~g~~~ 306 (525)
T 1tf7_A 281 DSIILATGATGTGKTLLVSRFVENAC 306 (525)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 35799999999999999999987654
No 398
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=92.97 E-value=0.052 Score=44.65 Aligned_cols=22 Identities=27% Similarity=0.383 Sum_probs=19.7
Q ss_pred EEEEEecCCCcHHHHHHHHHHH
Q 047930 177 MLGIYGMGGIGKTTLAKEVARK 198 (395)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~ 198 (395)
-|.|+|.+|+|||||...+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 4789999999999999999865
No 399
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=92.96 E-value=0.055 Score=44.39 Aligned_cols=24 Identities=25% Similarity=0.476 Sum_probs=20.9
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHh
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
--|.|+|..|+|||||...+.+..
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC
Confidence 357899999999999999998754
No 400
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=92.96 E-value=0.056 Score=44.24 Aligned_cols=25 Identities=32% Similarity=0.502 Sum_probs=21.4
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHh
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
.--|.|+|.+|+|||||+..+.+..
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~~~ 42 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQKI 42 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC
Confidence 3457899999999999999998753
No 401
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.96 E-value=0.066 Score=44.30 Aligned_cols=23 Identities=30% Similarity=0.343 Sum_probs=20.5
Q ss_pred EEEEEecCCCcHHHHHHHHHHHh
Q 047930 177 MLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
-|.|+|..|+|||||+..+....
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 47899999999999999998764
No 402
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=92.94 E-value=0.051 Score=48.98 Aligned_cols=21 Identities=33% Similarity=0.502 Sum_probs=18.6
Q ss_pred EEEEEecCCCcHHHHHHHHHH
Q 047930 177 MLGIYGMGGIGKTTLAKEVAR 197 (395)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~ 197 (395)
-|+|+|..|+|||||.+.++.
T Consensus 20 ~I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 20 TLMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp EEEEEEETTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 358999999999999999774
No 403
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=92.93 E-value=0.07 Score=52.00 Aligned_cols=27 Identities=22% Similarity=0.384 Sum_probs=23.5
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHhc
Q 047930 174 DVNMLGIYGMGGIGKTTLAKEVARKAE 200 (395)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (395)
...+|.++|++|+||||+|+.+.....
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~ 60 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLN 60 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 456899999999999999999987654
No 404
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=92.88 E-value=0.046 Score=44.49 Aligned_cols=24 Identities=25% Similarity=0.362 Sum_probs=20.7
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHh
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
--|.++|.+|+|||||+..+.+..
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~~ 31 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTGS 31 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Confidence 357899999999999999998753
No 405
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=92.88 E-value=0.063 Score=44.20 Aligned_cols=24 Identities=21% Similarity=0.252 Sum_probs=20.9
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHh
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
--|.|+|..|+|||||+..+....
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 457899999999999999998754
No 406
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=92.87 E-value=0.1 Score=49.29 Aligned_cols=28 Identities=18% Similarity=0.167 Sum_probs=24.0
Q ss_pred CCceEEEEEecCCCcHHHHHHHHHHHhc
Q 047930 173 PDVNMLGIYGMGGIGKTTLAKEVARKAE 200 (395)
Q Consensus 173 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (395)
..-.+++|+|+.|+|||||++.+.....
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence 4556899999999999999999987653
No 407
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=92.86 E-value=0.061 Score=43.91 Aligned_cols=25 Identities=20% Similarity=0.406 Sum_probs=21.4
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHh
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
..-|.|+|..|+|||||+..+.+..
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~~~ 30 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVEGQ 30 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCC
Confidence 4568899999999999999998654
No 408
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=92.86 E-value=0.058 Score=44.11 Aligned_cols=23 Identities=30% Similarity=0.361 Sum_probs=20.2
Q ss_pred EEEEEecCCCcHHHHHHHHHHHh
Q 047930 177 MLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
-|.|+|.+|+|||||...+.+..
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~~ 29 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTNA 29 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 57899999999999999988653
No 409
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=92.85 E-value=0.063 Score=44.34 Aligned_cols=23 Identities=39% Similarity=0.293 Sum_probs=18.9
Q ss_pred eEEEEEecCCCcHHHHHHHHHHH
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARK 198 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~ 198 (395)
--|.|+|.+|+|||||++.+.+.
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~ 37 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSK 37 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHhh
Confidence 45789999999999999766554
No 410
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=92.84 E-value=0.053 Score=50.26 Aligned_cols=25 Identities=32% Similarity=0.460 Sum_probs=21.8
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhc
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARKAE 200 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (395)
.+++|+|+.|+|||||++.+.....
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCC
Confidence 4789999999999999999987543
No 411
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=92.83 E-value=0.083 Score=42.47 Aligned_cols=24 Identities=29% Similarity=0.376 Sum_probs=20.8
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHh
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
.-|.|+|.+|+|||||...+....
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~~~ 31 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQVGE 31 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 458899999999999999997653
No 412
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=92.81 E-value=0.06 Score=43.90 Aligned_cols=25 Identities=24% Similarity=0.223 Sum_probs=20.9
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHh
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
.--|.|+|.+|+|||||...+....
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~~ 32 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSNT 32 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCC
Confidence 3457899999999999999988653
No 413
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=92.80 E-value=0.064 Score=44.38 Aligned_cols=24 Identities=29% Similarity=0.461 Sum_probs=21.0
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHh
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
--|+|+|..|+|||||...+....
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 458899999999999999998754
No 414
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=92.80 E-value=0.048 Score=45.52 Aligned_cols=22 Identities=32% Similarity=0.499 Sum_probs=19.4
Q ss_pred ceEEEEEecCCCcHHHHHHHHH
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVA 196 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~ 196 (395)
..-|+|+|.+|+|||||+..+.
T Consensus 23 ~~ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 23 IFKVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHTC
T ss_pred EEEEEEECCCCCCHHHHHHHHH
Confidence 3468899999999999999985
No 415
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=92.79 E-value=0.13 Score=44.42 Aligned_cols=38 Identities=29% Similarity=0.465 Sum_probs=27.9
Q ss_pred EEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcC
Q 047930 178 LGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQ 217 (395)
Q Consensus 178 i~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~ 217 (395)
|+|.|.||+||||++..+......++ ..++-+......
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~~g--~~VlliD~D~~~ 40 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMASDY--DKIYAVDGDPDS 40 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTTTC--SCEEEEEECTTS
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHCC--CeEEEEeCCCCc
Confidence 66799999999999999998876442 335666654433
No 416
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=92.79 E-value=0.06 Score=44.01 Aligned_cols=25 Identities=24% Similarity=0.481 Sum_probs=21.4
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHh
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
..-|.|+|..|+|||||+..+....
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCC
Confidence 3458899999999999999998754
No 417
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=92.75 E-value=0.061 Score=43.80 Aligned_cols=24 Identities=25% Similarity=0.367 Sum_probs=20.8
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHh
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
.-|.|+|.+|+|||||+..+....
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 457899999999999999998753
No 418
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=92.75 E-value=0.074 Score=48.73 Aligned_cols=28 Identities=25% Similarity=0.382 Sum_probs=23.9
Q ss_pred CCCceEEEEEecCCCcHHHHHHHHHHHh
Q 047930 172 NPDVNMLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 172 ~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
-....+++|+|+.|+|||||.+.+....
T Consensus 52 ~~~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 52 TGRAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp CCCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 3456789999999999999999998654
No 419
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=92.74 E-value=0.12 Score=50.92 Aligned_cols=28 Identities=14% Similarity=0.141 Sum_probs=24.2
Q ss_pred CCceEEEEEecCCCcHHHHHHHHHHHhc
Q 047930 173 PDVNMLGIYGMGGIGKTTLAKEVARKAE 200 (395)
Q Consensus 173 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (395)
....+|.|.|++|+||||+|+.+.....
T Consensus 394 q~~~~I~l~GlsGSGKSTiA~~La~~L~ 421 (573)
T 1m8p_A 394 TQGFTIFLTGYMNSGKDAIARALQVTLN 421 (573)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ccceEEEeecCCCCCHHHHHHHHHHHhc
Confidence 3457899999999999999999988754
No 420
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=92.73 E-value=0.17 Score=46.89 Aligned_cols=26 Identities=27% Similarity=0.457 Sum_probs=21.6
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHh
Q 047930 174 DVNMLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
+.++|+|+|.+|+|||||...+....
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~ 203 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLT 203 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCC
Confidence 45679999999999999999988643
No 421
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=92.72 E-value=0.064 Score=45.18 Aligned_cols=25 Identities=24% Similarity=0.256 Sum_probs=21.5
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHh
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
.--|.|+|.+|+|||||+..+....
T Consensus 28 ~~ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 28 KCKIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Confidence 3457899999999999999998764
No 422
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=92.69 E-value=0.049 Score=45.79 Aligned_cols=26 Identities=12% Similarity=0.162 Sum_probs=21.5
Q ss_pred CCceEEEEEecCCCcHHHHHHHHHHH
Q 047930 173 PDVNMLGIYGMGGIGKTTLAKEVARK 198 (395)
Q Consensus 173 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 198 (395)
.....++|+|..|+|||||.+.+...
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 34457999999999999999987643
No 423
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=92.69 E-value=0.062 Score=44.85 Aligned_cols=25 Identities=24% Similarity=0.481 Sum_probs=21.5
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHh
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
..-|.|+|..|+|||||+..+....
T Consensus 14 ~~ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 14 LHKVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCC
Confidence 4568899999999999999998654
No 424
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=92.69 E-value=0.071 Score=44.75 Aligned_cols=25 Identities=24% Similarity=0.433 Sum_probs=21.2
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHh
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
..-|+|+|.+|+|||||+..+....
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~~ 50 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQGL 50 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCC
Confidence 3458899999999999999988653
No 425
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=92.68 E-value=0.062 Score=43.68 Aligned_cols=24 Identities=33% Similarity=0.429 Sum_probs=20.6
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHH
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARK 198 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~ 198 (395)
..-|+|+|..|+|||||+..+...
T Consensus 9 ~~~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 9 LFKLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHCSC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 346789999999999999998764
No 426
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=92.67 E-value=0.068 Score=44.36 Aligned_cols=27 Identities=19% Similarity=0.218 Sum_probs=21.8
Q ss_pred CCCceEEEEEecCCCcHHHHHHHHHHH
Q 047930 172 NPDVNMLGIYGMGGIGKTTLAKEVARK 198 (395)
Q Consensus 172 ~~~~~vi~I~G~~GiGKTtLa~~v~~~ 198 (395)
..+.--|.|+|.+|+|||||+..+...
T Consensus 26 ~~~~~ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 26 GKKQMRILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHCSS
T ss_pred cCCccEEEEECCCCCCHHHHHHHHHhC
Confidence 344456889999999999999998643
No 427
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=92.66 E-value=0.071 Score=43.36 Aligned_cols=24 Identities=29% Similarity=0.324 Sum_probs=20.9
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHh
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
--|.|+|..|+|||||...+....
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 457899999999999999998754
No 428
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=92.64 E-value=0.072 Score=44.47 Aligned_cols=26 Identities=27% Similarity=0.367 Sum_probs=22.1
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHh
Q 047930 174 DVNMLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
...-|+|+|.+|+|||||+..+....
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCC
Confidence 34568899999999999999998764
No 429
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=92.60 E-value=0.074 Score=44.04 Aligned_cols=24 Identities=17% Similarity=0.350 Sum_probs=21.0
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHh
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
--|+|+|..|+|||||...+....
T Consensus 24 ~ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 458899999999999999998764
No 430
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=92.60 E-value=0.075 Score=48.90 Aligned_cols=25 Identities=32% Similarity=0.581 Sum_probs=22.6
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhc
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARKAE 200 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (395)
.+++|+|+.|+|||||.+.+.....
T Consensus 72 q~~gIiG~nGaGKTTLl~~I~g~~~ 96 (347)
T 2obl_A 72 QRIGIFAGSGVGKSTLLGMICNGAS 96 (347)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4799999999999999999998864
No 431
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=92.57 E-value=0.11 Score=42.88 Aligned_cols=34 Identities=26% Similarity=0.368 Sum_probs=24.9
Q ss_pred EEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcC
Q 047930 178 LGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQ 217 (395)
Q Consensus 178 i~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~ 217 (395)
+.|+|.+|+||||+|.++... . ..++|+..+..+
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~-----~~~~yiaT~~~~ 35 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-A-----PQVLYIATSQIL 35 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-C-----SSEEEEECCCC-
T ss_pred EEEECCCCCcHHHHHHHHHhc-C-----CCeEEEecCCCC
Confidence 679999999999999999854 2 125666655544
No 432
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=92.57 E-value=0.11 Score=46.70 Aligned_cols=34 Identities=21% Similarity=0.502 Sum_probs=26.1
Q ss_pred HHHHHHHhcCCCceEEEEEecCCCcHHHHHHHHHHHh
Q 047930 163 LNDILDALKNPDVNMLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 163 ~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
++++...+.. .+++|+|++|+|||||.+.+....
T Consensus 160 v~~lf~~l~g---eiv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 160 IEELKEYLKG---KISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp HHHHHHHHSS---SEEEEECSTTSSHHHHHHHHSTTC
T ss_pred HHHHHHHhcC---CeEEEECCCCCcHHHHHHHhcccc
Confidence 4555565542 478999999999999999998644
No 433
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=92.57 E-value=0.21 Score=42.53 Aligned_cols=27 Identities=26% Similarity=0.308 Sum_probs=23.8
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhcc
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARKAEN 201 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~ 201 (395)
...|.+.|+.|+||||+++.+.+....
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 357999999999999999999998753
No 434
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=92.56 E-value=0.066 Score=44.77 Aligned_cols=25 Identities=32% Similarity=0.456 Sum_probs=21.6
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHh
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
..-|+|+|.+|+|||||+..+....
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 8 LLKVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCC
Confidence 4568899999999999999998764
No 435
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.55 E-value=0.09 Score=43.63 Aligned_cols=26 Identities=31% Similarity=0.500 Sum_probs=21.9
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHh
Q 047930 174 DVNMLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
..--|.|+|.+|+|||||+..+....
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~~ 52 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTKR 52 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCC
Confidence 34568899999999999999998763
No 436
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=92.55 E-value=0.067 Score=45.62 Aligned_cols=22 Identities=27% Similarity=0.388 Sum_probs=19.3
Q ss_pred EEEEecCCCcHHHHHHHHHHHh
Q 047930 178 LGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 178 i~I~G~~GiGKTtLa~~v~~~~ 199 (395)
|.|+|.+|+|||+|+..+.++.
T Consensus 16 ivlvGd~~VGKTsLi~r~~~~~ 37 (216)
T 4dkx_A 16 LVFLGEQSVGKTSLITRFMYDS 37 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCcCHHHHHHHHHhCC
Confidence 6789999999999999988653
No 437
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=92.51 E-value=0.075 Score=43.82 Aligned_cols=24 Identities=29% Similarity=0.318 Sum_probs=20.9
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHh
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
--|.|+|..|+|||||...+....
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIASGQ 46 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHcCC
Confidence 457899999999999999998754
No 438
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=92.47 E-value=0.076 Score=44.79 Aligned_cols=25 Identities=20% Similarity=0.157 Sum_probs=21.2
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHh
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
...|.|+|.+|+|||||...+....
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4568899999999999999998754
No 439
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=92.46 E-value=0.071 Score=43.97 Aligned_cols=24 Identities=25% Similarity=0.277 Sum_probs=21.0
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHh
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
--|.|+|..|+|||||...+....
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 458899999999999999998764
No 440
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=92.42 E-value=0.078 Score=43.90 Aligned_cols=25 Identities=24% Similarity=0.352 Sum_probs=21.5
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHh
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
.--|.|+|.+|+|||||...+....
T Consensus 23 ~~ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 23 ALKIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eeEEEEECcCCCCHHHHHHHHhcCC
Confidence 3457899999999999999998764
No 441
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=92.41 E-value=0.077 Score=43.99 Aligned_cols=25 Identities=12% Similarity=0.310 Sum_probs=21.5
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHh
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
.--|+|+|..|+|||||+..+....
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCc
Confidence 3457899999999999999998764
No 442
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=92.41 E-value=0.077 Score=43.84 Aligned_cols=23 Identities=30% Similarity=0.375 Sum_probs=20.2
Q ss_pred EEEEEecCCCcHHHHHHHHHHHh
Q 047930 177 MLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 177 vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
-|.|+|..|+|||||...+....
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47899999999999999998753
No 443
>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A 3j0j_A* 1um2_C
Probab=92.40 E-value=0.17 Score=48.94 Aligned_cols=57 Identities=26% Similarity=0.320 Sum_probs=37.9
Q ss_pred HHHHhcC-CCceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcC-CHHHHHHHH
Q 047930 166 ILDALKN-PDVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQ-DIRKIQGEF 226 (395)
Q Consensus 166 l~~~l~~-~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i 226 (395)
.++.|.. .+-.-++|.|..|+|||+|+.++.+... -+.++++-+.+.. ...++++++
T Consensus 211 vID~l~PigrGqr~~Ifg~~g~GKT~l~~~ia~~~~----~~v~V~~~iGER~~Ev~e~~~~~ 269 (578)
T 3gqb_A 211 ILDVLFPVAMGGTAAIPGPFGSGKSVTQQSLAKWSN----ADVVVYVGSGERGNEMTDVLVEF 269 (578)
T ss_dssp HHHTTSCEETTCEEEECCCTTSCHHHHHHHHHHHSS----CSEEEEEEEEECHHHHHHHHTTG
T ss_pred hhhhcccccCCCEEeeeCCCCccHHHHHHHHHhccC----CCEEEEEEecccHHHHHHHHHHH
Confidence 4455541 1223588999999999999999988743 3567888887653 344444443
No 444
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=92.39 E-value=0.21 Score=50.16 Aligned_cols=62 Identities=21% Similarity=0.194 Sum_probs=38.1
Q ss_pred HHHHHHHHhcCCCceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHHH
Q 047930 162 TLNDILDALKNPDVNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFAD 228 (395)
Q Consensus 162 ~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 228 (395)
..+.+...|... .+..|+||+|+|||+.+..+....-.+ ...+.++...+..+..+...+..
T Consensus 194 Q~~AV~~al~~~--~~~lI~GPPGTGKT~ti~~~I~~l~~~---~~~ILv~a~TN~AvD~i~erL~~ 255 (646)
T 4b3f_X 194 QKEAVLFALSQK--ELAIIHGPPGTGKTTTVVEIILQAVKQ---GLKVLCCAPSNIAVDNLVERLAL 255 (646)
T ss_dssp HHHHHHHHHHCS--SEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEEESSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCC--CceEEECCCCCCHHHHHHHHHHHHHhC---CCeEEEEcCchHHHHHHHHHHHh
Confidence 344455555433 367799999999996655554443222 22567777766666666666643
No 445
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=92.38 E-value=0.088 Score=50.64 Aligned_cols=28 Identities=21% Similarity=0.330 Sum_probs=23.3
Q ss_pred CCceEEEEEecCCCcHHHHHHHHHHHhc
Q 047930 173 PDVNMLGIYGMGGIGKTTLAKEVARKAE 200 (395)
Q Consensus 173 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (395)
....+|.++|+.|+||||+++.+.....
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~ 64 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLN 64 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3456889999999999999999987654
No 446
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=92.38 E-value=0.073 Score=44.02 Aligned_cols=25 Identities=28% Similarity=0.373 Sum_probs=21.6
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHh
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
.--|.|+|..|+|||||+..+....
T Consensus 16 ~~ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 16 LFKLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCC
Confidence 3458899999999999999998764
No 447
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=92.33 E-value=0.087 Score=42.95 Aligned_cols=23 Identities=26% Similarity=0.304 Sum_probs=20.3
Q ss_pred eEEEEEecCCCcHHHHHHHHHHH
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARK 198 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~ 198 (395)
.-+.|.|.+|+||||||..+...
T Consensus 17 ~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHc
Confidence 45789999999999999999874
No 448
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=92.32 E-value=0.082 Score=43.57 Aligned_cols=25 Identities=20% Similarity=0.266 Sum_probs=21.3
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHh
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
..-|.|+|..|+|||||...+....
T Consensus 20 ~~ki~v~G~~~~GKSsli~~l~~~~ 44 (189)
T 1z06_A 20 IFKIIVIGDSNVGKTCLTYRFCAGR 44 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSS
T ss_pred eEEEEEECCCCCCHHHHHHHHHcCC
Confidence 3468899999999999999998653
No 449
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=92.32 E-value=0.092 Score=48.19 Aligned_cols=28 Identities=25% Similarity=0.329 Sum_probs=24.0
Q ss_pred CCCceEEEEEecCCCcHHHHHHHHHHHh
Q 047930 172 NPDVNMLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 172 ~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
..+..+++|+|.+|+|||||+..+....
T Consensus 53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 53 CGNTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp CSCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred cCCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4566889999999999999999997654
No 450
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=92.32 E-value=0.071 Score=44.34 Aligned_cols=23 Identities=26% Similarity=0.372 Sum_probs=19.3
Q ss_pred eEEEEEecCCCcHHHHHHHHHHH
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARK 198 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~ 198 (395)
.-|.|+|.+|+|||||++.+.+.
T Consensus 21 ~ki~~vG~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 21 PRILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp CEEEEEESTTSSHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 45789999999999999876653
No 451
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=92.30 E-value=0.07 Score=44.58 Aligned_cols=24 Identities=21% Similarity=0.354 Sum_probs=20.1
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHH
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARK 198 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~ 198 (395)
.--|.|+|..|+|||||...+...
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 25 LFKFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHC-
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 345789999999999999998754
No 452
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=92.26 E-value=0.073 Score=50.97 Aligned_cols=25 Identities=28% Similarity=0.286 Sum_probs=21.5
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHh
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
-.+++|+|+.|+|||||++.++.-.
T Consensus 138 Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 138 GPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp CCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCcc
Confidence 3578999999999999999988753
No 453
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=92.25 E-value=0.075 Score=44.36 Aligned_cols=24 Identities=25% Similarity=0.277 Sum_probs=20.9
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHh
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
--|.|+|.+|+|||||+..+....
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 458899999999999999998754
No 454
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=92.25 E-value=0.08 Score=45.31 Aligned_cols=25 Identities=20% Similarity=0.360 Sum_probs=21.7
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHH
Q 047930 174 DVNMLGIYGMGGIGKTTLAKEVARK 198 (395)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~ 198 (395)
+...|+|+|.+|+|||||+..+...
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567889999999999999999765
No 455
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=92.23 E-value=0.076 Score=44.27 Aligned_cols=26 Identities=12% Similarity=0.309 Sum_probs=21.5
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHh
Q 047930 174 DVNMLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
...-|.|+|..|+|||||+..+....
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHCC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhCC
Confidence 34568899999999999999998653
No 456
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=92.22 E-value=0.088 Score=44.08 Aligned_cols=24 Identities=25% Similarity=0.357 Sum_probs=20.9
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHh
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
.-|.|+|.+|+|||||+..+....
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 457899999999999999998754
No 457
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=92.21 E-value=0.07 Score=44.44 Aligned_cols=25 Identities=24% Similarity=0.279 Sum_probs=20.0
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHh
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
.--|.|+|.+|+|||||...+.+..
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~~~ 44 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTTNG 44 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC--
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC
Confidence 3457899999999999999988653
No 458
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=92.20 E-value=0.081 Score=44.91 Aligned_cols=22 Identities=36% Similarity=0.465 Sum_probs=19.4
Q ss_pred eEEEEEecCCCcHHHHHHHHHH
Q 047930 176 NMLGIYGMGGIGKTTLAKEVAR 197 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~ 197 (395)
.-|+|+|.+|+|||||...+..
T Consensus 38 ~kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 38 YRVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp EEEEEECCTTSSHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 4588999999999999999874
No 459
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=92.18 E-value=0.072 Score=43.59 Aligned_cols=23 Identities=26% Similarity=0.369 Sum_probs=20.3
Q ss_pred eEEEEEecCCCcHHHHHHHHHHH
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARK 198 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~ 198 (395)
--|.|+|..|+|||||...+...
T Consensus 22 ~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 22 HKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEEETTSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 35789999999999999999864
No 460
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=92.17 E-value=0.08 Score=43.67 Aligned_cols=24 Identities=25% Similarity=0.382 Sum_probs=21.0
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHh
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
--|.|+|..|+|||||+..+.+..
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 458899999999999999998764
No 461
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=92.15 E-value=0.097 Score=42.89 Aligned_cols=27 Identities=26% Similarity=0.302 Sum_probs=22.2
Q ss_pred CCceEEEEEecCCCcHHHHHHHHHHHh
Q 047930 173 PDVNMLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 173 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
....-|.|+|.+|+|||||...+....
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 445678899999999999999998654
No 462
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=92.14 E-value=0.11 Score=41.34 Aligned_cols=24 Identities=25% Similarity=0.315 Sum_probs=20.7
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHH
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARK 198 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~ 198 (395)
..+.+|+|+.|.|||||...++--
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~~ 46 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILVG 46 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999988753
No 463
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=92.11 E-value=0.18 Score=42.10 Aligned_cols=40 Identities=20% Similarity=0.290 Sum_probs=28.3
Q ss_pred eEEEEE-ecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcC
Q 047930 176 NMLGIY-GMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQ 217 (395)
Q Consensus 176 ~vi~I~-G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~ 217 (395)
++|+|+ +.||+||||++..+......++ ..++.+......
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la~~g--~~vlliD~D~~~ 42 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALSRSG--YNIAVVDTDPQM 42 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHHHTT--CCEEEEECCTTC
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHHCC--CeEEEEECCCCC
Confidence 577787 6699999999999988765432 235666665443
No 464
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=92.09 E-value=0.086 Score=43.61 Aligned_cols=24 Identities=33% Similarity=0.342 Sum_probs=21.0
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHh
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
.-|.|+|..|+|||||+..+.+..
T Consensus 19 ~ki~v~G~~~~GKssli~~l~~~~ 42 (194)
T 2atx_A 19 LKCVVVGDGAVGKTCLLMSYANDA 42 (194)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 458899999999999999998763
No 465
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.06 E-value=0.094 Score=44.03 Aligned_cols=24 Identities=29% Similarity=0.372 Sum_probs=20.9
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHh
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
.-|.|+|.+|+|||||+..+....
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSS
T ss_pred cEEEEECcCCCCHHHHHHHHhcCC
Confidence 458899999999999999998753
No 466
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.05 E-value=0.13 Score=42.55 Aligned_cols=25 Identities=24% Similarity=0.541 Sum_probs=21.3
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHh
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
..-|.|+|.+|+|||||...+....
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~~~ 32 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVKGT 32 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred eeEEEEECCCCCcHHHHHHHHHcCC
Confidence 3468899999999999999998753
No 467
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=92.05 E-value=0.059 Score=49.24 Aligned_cols=105 Identities=17% Similarity=0.132 Sum_probs=53.7
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCccccchhhhHHHHHHHHhcCCe
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFADKLGLTLHEETESGRARSLCNRLKKEKR 255 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~kr 255 (395)
.+++|+|+.|+|||||++.+..-... -...+.+.-........ .-+.++. -..........+...|. .++
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~~---~~g~i~i~~~~e~~~~~----~~~~i~~--~~ggg~~~r~~la~aL~-~~p 241 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIPK---EERIISIEDTEEIVFKH----HKNYTQL--FFGGNITSADCLKSCLR-MRP 241 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSCT---TSCEEEEESSCCCCCSS----CSSEEEE--ECBTTBCHHHHHHHHTT-SCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcC---CCcEEEECCeecccccc----chhEEEE--EeCCChhHHHHHHHHhh-hCC
Confidence 47899999999999999999876532 23444444221111000 0000000 00011122334445555 467
Q ss_pred EEEEEeCCCCccccchhccccCCCCCCcEEEEeecchh
Q 047930 256 ILVILDNIWENLDFQAVGIPHGDGHKGSKVLLTARSLD 293 (395)
Q Consensus 256 ~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iivTtR~~~ 293 (395)
-+|++|++.+.+.++.+. .+..+ +.-+|+||....
T Consensus 242 ~ilildE~~~~e~~~~l~-~~~~g--~~tvi~t~H~~~ 276 (330)
T 2pt7_A 242 DRIILGELRSSEAYDFYN-VLCSG--HKGTLTTLHAGS 276 (330)
T ss_dssp SEEEECCCCSTHHHHHHH-HHHTT--CCCEEEEEECSS
T ss_pred CEEEEcCCChHHHHHHHH-HHhcC--CCEEEEEEcccH
Confidence 789999997755444332 22111 223666666544
No 468
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=92.02 E-value=0.078 Score=44.86 Aligned_cols=24 Identities=33% Similarity=0.358 Sum_probs=20.3
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHH
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARK 198 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~ 198 (395)
.--|.|+|.+|+|||||+..+...
T Consensus 34 ~~ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 34 SVKVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHC-
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 346889999999999999999764
No 469
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=92.02 E-value=0.24 Score=41.81 Aligned_cols=42 Identities=17% Similarity=0.259 Sum_probs=29.6
Q ss_pred EEEEE-ecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHH
Q 047930 177 MLGIY-GMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRK 221 (395)
Q Consensus 177 vi~I~-G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~ 221 (395)
+|+|+ +-||+||||++..+......++ .++-+......+...
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~~la~~g---~VlliD~D~q~~~~~ 44 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSAYLALQG---ETLLIDGDPNRSATG 44 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHTTS---CEEEEEECTTCHHHH
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHhcC---CEEEEECCCCCCHHH
Confidence 56665 6799999999999998876442 566777655444433
No 470
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=91.98 E-value=0.093 Score=47.22 Aligned_cols=25 Identities=24% Similarity=0.426 Sum_probs=22.2
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHH
Q 047930 174 DVNMLGIYGMGGIGKTTLAKEVARK 198 (395)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~ 198 (395)
+...|+|+|.+|+|||||...+...
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCC
Confidence 3568999999999999999999865
No 471
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=91.98 E-value=0.09 Score=48.44 Aligned_cols=24 Identities=21% Similarity=0.340 Sum_probs=21.0
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHh
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
.+++|+|++|+|||||++.+....
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCS
T ss_pred CEEEEECCCCccHHHHHHHHhccc
Confidence 478999999999999999998543
No 472
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=91.97 E-value=0.1 Score=43.27 Aligned_cols=26 Identities=23% Similarity=0.305 Sum_probs=21.8
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHh
Q 047930 174 DVNMLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
....|.|+|..|+|||||...+....
T Consensus 16 ~~~ki~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 16 TKLQVVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHSCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 34568899999999999999987653
No 473
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=91.96 E-value=0.089 Score=44.25 Aligned_cols=25 Identities=20% Similarity=0.151 Sum_probs=21.2
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHh
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
.--|.|+|.+|+|||||+..+....
T Consensus 9 ~~ki~i~G~~~~GKTsli~~l~~~~ 33 (212)
T 2j0v_A 9 FIKCVTVGDGAVGKTCMLICYTSNK 33 (212)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCC
Confidence 3458899999999999999998653
No 474
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=91.96 E-value=0.09 Score=43.97 Aligned_cols=25 Identities=24% Similarity=0.317 Sum_probs=21.2
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHh
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
.--|.|+|.+|+|||||+..+....
T Consensus 29 ~~ki~vvG~~~vGKSsli~~l~~~~ 53 (201)
T 2hup_A 29 LFKLVLVGDASVGKTCVVQRFKTGA 53 (201)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhhCC
Confidence 3468899999999999999987653
No 475
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=91.93 E-value=0.1 Score=44.96 Aligned_cols=26 Identities=15% Similarity=0.267 Sum_probs=22.2
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHh
Q 047930 174 DVNMLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
....|+|+|.+|+|||||...+....
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTSC
T ss_pred CceEEEEECCCCCCHHHHHHHHcCCC
Confidence 45678999999999999999998653
No 476
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=91.91 E-value=0.23 Score=42.48 Aligned_cols=106 Identities=13% Similarity=0.036 Sum_probs=51.0
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCC-cCCHHHHHHHHHHHhCCCccccchhhhHHHHHHHHhcC
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQ-IQDIRKIQGEFADKLGLTLHEETESGRARSLCNRLKKE 253 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 253 (395)
..+..++|.-|.||||-+.....+.... .....++-..-+ .+. . .+.+.++.......-... ..+.+.+ +
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~r~~~~-g~kvli~kp~~D~Ryg-~----~i~sr~G~~~~a~~i~~~-~di~~~~--~ 89 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVRRFQIA-QYKCLVIKYAKDTRYS-S----SFCTHDRNTMEALPACLL-RDVAQEA--L 89 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHTT-TCCEEEEEETTCCCC----------------CEEEEESSG-GGGHHHH--T
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHC-CCeEEEEeecCCccch-H----HHHhhcCCeeEEEecCCH-HHHHHHh--c
Confidence 3578899999999998777776665443 233433332222 222 2 344444433221100000 1133333 2
Q ss_pred CeEEEEEeCCCCccccchhccccCCCCCCcEEEEeecc
Q 047930 254 KRILVILDNIWENLDFQAVGIPHGDGHKGSKVLLTARS 291 (395)
Q Consensus 254 kr~LlVlDdv~~~~~~~~l~~~l~~~~~gs~iivTtR~ 291 (395)
+--+|++|++.-.....++...+.+ .|..||+|.++
T Consensus 90 ~~dvViIDEaQF~~~v~el~~~l~~--~gi~VI~~GL~ 125 (234)
T 2orv_A 90 GVAVIGIDEGQFFPDIVEFCEAMAN--AGKTVIVAALD 125 (234)
T ss_dssp TCSEEEESSGGGCTTHHHHHHHHHH--TTCEEEEECCS
T ss_pred cCCEEEEEchhhhhhHHHHHHHHHh--CCCEEEEEecc
Confidence 2239999998544333333322222 47789999887
No 477
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=91.88 E-value=0.076 Score=45.63 Aligned_cols=27 Identities=22% Similarity=0.340 Sum_probs=20.6
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhcc
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARKAEN 201 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~ 201 (395)
-..|.|.|+.|+||||+++.+.+....
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l~~ 51 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRLQE 51 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 357999999999999999999987654
No 478
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=91.85 E-value=0.1 Score=43.53 Aligned_cols=24 Identities=33% Similarity=0.382 Sum_probs=20.9
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHh
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
.-|+|+|.+|+|||||+..+....
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 26 KKLVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHhCc
Confidence 458899999999999999998754
No 479
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=91.80 E-value=0.15 Score=42.72 Aligned_cols=27 Identities=15% Similarity=0.129 Sum_probs=22.9
Q ss_pred CCceEEEEEecCCCcHHHHHHHHHHHh
Q 047930 173 PDVNMLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 173 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
....+|+|+|+.|+||+|+|..+.+..
T Consensus 9 ~~~~II~itGk~~SGKd~va~~l~~~~ 35 (202)
T 3ch4_B 9 APRLVLLFSGKRKSGKDFVTEALQSRL 35 (202)
T ss_dssp CCSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCChHHHHHHHHHHc
Confidence 345799999999999999999887644
No 480
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=91.80 E-value=0.2 Score=49.13 Aligned_cols=43 Identities=16% Similarity=0.169 Sum_probs=30.5
Q ss_pred chHHHHHHHHHHhc--CCCceEEEEEecCCCcHHHHHHHHHHHhc
Q 047930 158 SRMSTLNDILDALK--NPDVNMLGIYGMGGIGKTTLAKEVARKAE 200 (395)
Q Consensus 158 gr~~~~~~l~~~l~--~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (395)
.|.+....+.+... .....+|.+.|+.|+||||+++.+.....
T Consensus 353 ~r~eV~~~lr~~~~~~~~~~~~I~l~G~~GsGKSTia~~La~~L~ 397 (546)
T 2gks_A 353 TRPEVAEILAETYVPKHKQGFCVWLTGLPCAGKSTIAEILATMLQ 397 (546)
T ss_dssp SCHHHHHHHHHHSCCGGGCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHhhccccccceEEEccCCCCCCHHHHHHHHHHHhh
Confidence 34444445555542 23457899999999999999999988654
No 481
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=91.76 E-value=0.1 Score=49.56 Aligned_cols=26 Identities=27% Similarity=0.497 Sum_probs=22.9
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhc
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARKAE 200 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (395)
-..++|+|+.|+|||||++.+.....
T Consensus 157 Gq~~~IvG~sGsGKSTLl~~Iag~~~ 182 (438)
T 2dpy_A 157 GQRMGLFAGSGVGKSVLLGMMARYTR 182 (438)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcccC
Confidence 35799999999999999999998764
No 482
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=91.76 E-value=0.11 Score=51.42 Aligned_cols=26 Identities=23% Similarity=0.303 Sum_probs=23.5
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHh
Q 047930 174 DVNMLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
...+|.|.|+.|+||||+|+.+....
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L 76 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYL 76 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 56789999999999999999998875
No 483
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=91.72 E-value=0.1 Score=44.13 Aligned_cols=24 Identities=25% Similarity=0.271 Sum_probs=20.8
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHh
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
--|.|+|.+|+|||||+..+....
T Consensus 28 ~ki~vvG~~~vGKSsL~~~l~~~~ 51 (214)
T 3q3j_B 28 CKLVLVGDVQCGKTAMLQVLAKDC 51 (214)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCC
Confidence 457799999999999999998764
No 484
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=91.71 E-value=0.1 Score=50.01 Aligned_cols=25 Identities=20% Similarity=0.171 Sum_probs=22.1
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhc
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARKAE 200 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (395)
.+++|+|+.|+|||||.+.+..-..
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~~ 54 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTALI 54 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred ceEEEECCCCCcHHHHHHHHhcCCC
Confidence 7899999999999999999986543
No 485
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=91.71 E-value=0.35 Score=44.49 Aligned_cols=28 Identities=29% Similarity=0.373 Sum_probs=22.4
Q ss_pred CCceEEEEEecCCCcHHHHHHHHHHHhc
Q 047930 173 PDVNMLGIYGMGGIGKTTLAKEVARKAE 200 (395)
Q Consensus 173 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (395)
+...++...|.||+||||++..+.....
T Consensus 16 ~~~~i~v~sgKGGvGKTTvaanLA~~lA 43 (354)
T 2woj_A 16 TTHKWIFVGGKGGVGKTTSSCSIAIQMA 43 (354)
T ss_dssp SSCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHH
Confidence 3455667779999999999999887655
No 486
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=91.69 E-value=0.056 Score=44.20 Aligned_cols=23 Identities=26% Similarity=0.327 Sum_probs=9.6
Q ss_pred eEEEEEecCCCcHHHHHHHHHHH
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARK 198 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~ 198 (395)
--|.|+|..|+|||||+..+.+.
T Consensus 9 ~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 9 FKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEEECCCCC------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45889999999999999998754
No 487
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.67 E-value=0.11 Score=43.70 Aligned_cols=25 Identities=20% Similarity=0.357 Sum_probs=21.3
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHh
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
..-|+|+|.+|+|||||+..+....
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC
Confidence 3468899999999999999998653
No 488
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=91.66 E-value=0.096 Score=43.37 Aligned_cols=24 Identities=29% Similarity=0.427 Sum_probs=19.5
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHh
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
--|.|+|..|+|||||+..+....
T Consensus 27 ~ki~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 27 LQVIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHCC--
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 347899999999999999987543
No 489
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=91.65 E-value=0.08 Score=49.94 Aligned_cols=27 Identities=22% Similarity=0.197 Sum_probs=21.2
Q ss_pred CCCceEEEEEecCCCcHHHHHHHHHHH
Q 047930 172 NPDVNMLGIYGMGGIGKTTLAKEVARK 198 (395)
Q Consensus 172 ~~~~~vi~I~G~~GiGKTtLa~~v~~~ 198 (395)
.+....++|+|+.|+|||||++.++..
T Consensus 39 ~Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 39 QGFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp -CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred CCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 333334899999999999999998754
No 490
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=91.63 E-value=0.22 Score=46.20 Aligned_cols=40 Identities=20% Similarity=0.376 Sum_probs=29.1
Q ss_pred CCceEEEEEe-cCCCcHHHHHHHHHHHhcccCCCCEEEEEEeC
Q 047930 173 PDVNMLGIYG-MGGIGKTTLAKEVARKAENEKLFDQVIFVEVS 214 (395)
Q Consensus 173 ~~~~vi~I~G-~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s 214 (395)
.+.++|+|+| -||+||||+|..++.....++ ..++.+.+.
T Consensus 141 ~~~kvIav~s~KGGvGKTT~a~nLA~~La~~g--~rVlliD~D 181 (373)
T 3fkq_A 141 DKSSVVIFTSPCGGVGTSTVAAACAIAHANMG--KKVFYLNIE 181 (373)
T ss_dssp TSCEEEEEECSSTTSSHHHHHHHHHHHHHHHT--CCEEEEECC
T ss_pred CCceEEEEECCCCCChHHHHHHHHHHHHHhCC--CCEEEEECC
Confidence 4578899985 899999999999887754431 235666644
No 491
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=91.58 E-value=0.12 Score=45.54 Aligned_cols=23 Identities=22% Similarity=0.377 Sum_probs=20.6
Q ss_pred eEEEEEecCCCcHHHHHHHHHHH
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARK 198 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~ 198 (395)
..|+++|.+|+|||||...+...
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999999765
No 492
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=91.54 E-value=0.11 Score=46.92 Aligned_cols=25 Identities=28% Similarity=0.460 Sum_probs=22.3
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHH
Q 047930 174 DVNMLGIYGMGGIGKTTLAKEVARK 198 (395)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~ 198 (395)
....|+|+|.+|+|||||...+...
T Consensus 9 ~~g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 9 KVGYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 4578999999999999999999865
No 493
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=91.39 E-value=0.14 Score=43.14 Aligned_cols=50 Identities=20% Similarity=0.171 Sum_probs=31.7
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhcccCCCCEEEEEEeCCcCCHHHHHHHHHH
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARKAENEKLFDQVIFVEVSQIQDIRKIQGEFAD 228 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 228 (395)
+.|+|-|.-|+||||+++.+.+.... .+.. +...-+......+.+++++.
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~~--~~~v-~~~~eP~~t~~g~~ir~~l~ 52 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLVK--DYDV-IMTREPGGVPTGEEIRKIVL 52 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTT--TSCE-EEEESSTTCHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHC--CCCE-EEeeCCCCChHHHHHHHHHh
Confidence 46889999999999999999988742 2443 33332333334444444443
No 494
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=91.38 E-value=0.18 Score=43.40 Aligned_cols=40 Identities=25% Similarity=0.325 Sum_probs=27.5
Q ss_pred CceEEEEEe-cCCCcHHHHHHHHHHHhcccCCCCEEEEEEeC
Q 047930 174 DVNMLGIYG-MGGIGKTTLAKEVARKAENEKLFDQVIFVEVS 214 (395)
Q Consensus 174 ~~~vi~I~G-~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~s 214 (395)
..++|+|++ -||+||||++..+........ =..++.+...
T Consensus 3 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~~-g~~VlliD~D 43 (245)
T 3ea0_A 3 AKRVFGFVSAKGGDGGSCIAANFAFALSQEP-DIHVLAVDIS 43 (245)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHHHTTST-TCCEEEEECC
T ss_pred CCeEEEEECCCCCcchHHHHHHHHHHHHhCc-CCCEEEEECC
Confidence 456788885 589999999999998765430 1235555553
No 495
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=91.36 E-value=0.34 Score=43.95 Aligned_cols=27 Identities=33% Similarity=0.431 Sum_probs=21.8
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhcc
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARKAEN 201 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~~ 201 (395)
..++...|.||+||||+|..++.....
T Consensus 14 ~~i~v~sgKGGvGKTTvA~~LA~~lA~ 40 (324)
T 3zq6_A 14 TTFVFIGGKGGVGKTTISAATALWMAR 40 (324)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHH
Confidence 356677799999999999998876543
No 496
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=91.31 E-value=0.15 Score=43.62 Aligned_cols=26 Identities=19% Similarity=0.173 Sum_probs=23.4
Q ss_pred ceEEEEEecCCCcHHHHHHHHHHHhc
Q 047930 175 VNMLGIYGMGGIGKTTLAKEVARKAE 200 (395)
Q Consensus 175 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 200 (395)
..+|.|.|+.|+||||+++.+.....
T Consensus 14 ~~iI~i~g~~gsGk~~i~~~la~~lg 39 (223)
T 3hdt_A 14 NLIITIEREYGSGGRIVGKKLAEELG 39 (223)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999998764
No 497
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=91.30 E-value=1.8 Score=41.24 Aligned_cols=88 Identities=13% Similarity=0.202 Sum_probs=54.5
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhhhhHhhccccccCCCcchhHhhHHHHHHHHHHHHHHHHHHcCCcceeeeccCCCCcc
Q 047930 67 IEKYVEKWLASVNGVIDEAEKFTGVDARANKRCFKGLCPNLKIRRRLSKEAERQKEAIVKVREAGRFDRISYNIIPDDSL 146 (395)
Q Consensus 67 ~~~~~~~Wl~~lr~~a~d~ed~ld~~~~~~~~~~~~~~~~~~~r~~i~~~i~~~~~~l~~i~~~~~~~~~~~~~~~~~~~ 146 (395)
....+..|..++.++.-.+|-.+|-.. .. ....+..+..++..+.++++++...
T Consensus 161 ~~~~~~~~r~~l~~~~a~iEa~iDf~e--d~--------~~~~~~~~~~~i~~l~~~l~~~~~~---------------- 214 (462)
T 3geh_A 161 LAHPIRQLRANCLDILAEIEARIDFEE--DL--------PPLDDEAIISDIENIAAEISQLLAT---------------- 214 (462)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHTTSSS--SS--------CCCCTTTHHHHHHHHHHHHHHHTTT----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccc--cC--------ChhhHHHHHHHHHHHHHHHHHHHHH----------------
Confidence 456788899998888888887776321 00 0112334556677777766665211
Q ss_pred ccccccccchhchHHHHHHHHHHhcCCCceEEEEEecCCCcHHHHHHHHHHHh
Q 047930 147 LLSNKDYEAFESRMSTLNDILDALKNPDVNMLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 147 ~~~~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
+ . ..+... ++. .|+|+|.+|+|||||...+....
T Consensus 215 ------------~-~-~~~~~r----~~~-kV~ivG~~nvGKSSLln~L~~~~ 248 (462)
T 3geh_A 215 ------------K-D-KGELLR----TGL-KVAIVGRPNVGKSSLLNAWSQSD 248 (462)
T ss_dssp ------------H-H-HHHHHH----HCE-EEEEEECTTSSHHHHHHHHHHHH
T ss_pred ------------h-h-hhhhhc----CCC-EEEEEcCCCCCHHHHHHHHhCCC
Confidence 0 0 001111 123 37899999999999999998764
No 498
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=91.29 E-value=0.095 Score=43.22 Aligned_cols=24 Identities=21% Similarity=0.279 Sum_probs=20.9
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHh
Q 047930 176 NMLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 176 ~vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
--|+|+|..|+|||||...+....
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 22 VHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEEECTTSSHHHHHHHTSCGG
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 457899999999999999988665
No 499
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=91.20 E-value=0.31 Score=44.38 Aligned_cols=30 Identities=27% Similarity=0.409 Sum_probs=23.9
Q ss_pred CCCceEEEEEecCCCcHHHHHHHHHHHhcc
Q 047930 172 NPDVNMLGIYGMGGIGKTTLAKEVARKAEN 201 (395)
Q Consensus 172 ~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 201 (395)
++...++.+.|.||+||||++..++.....
T Consensus 16 ~~~~~i~v~sgkGGvGKTTva~~LA~~lA~ 45 (329)
T 2woo_A 16 QTSLKWIFVGGKGGVGKTTTSCSLAIQMSK 45 (329)
T ss_dssp CTTCCEEEEECSSSSSHHHHHHHHHHHHHT
T ss_pred CCCCEEEEEeCCCCCcHHHHHHHHHHHHHH
Confidence 344567777899999999999999877653
No 500
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=91.19 E-value=0.24 Score=43.60 Aligned_cols=26 Identities=19% Similarity=0.448 Sum_probs=22.2
Q ss_pred CceEEEEEecCCCcHHHHHHHHHHHh
Q 047930 174 DVNMLGIYGMGGIGKTTLAKEVARKA 199 (395)
Q Consensus 174 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 199 (395)
....|.++|.+|+|||||...+....
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 35678899999999999999998654
Done!