Query 047931
Match_columns 339
No_of_seqs 161 out of 1570
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 04:42:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047931.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047931hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01640 F_box_assoc_1 F-box 100.0 2.4E-34 5.1E-39 243.7 27.5 211 98-312 1-230 (230)
2 PF07734 FBA_1: F-box associat 99.8 1.7E-16 3.7E-21 126.8 18.4 140 194-334 1-164 (164)
3 PF08268 FBA_3: F-box associat 99.7 4.7E-15 1E-19 113.5 14.0 104 194-298 1-118 (129)
4 PLN03215 ascorbic acid mannose 99.5 1.2E-11 2.5E-16 109.0 20.2 289 2-319 5-355 (373)
5 PHA02713 hypothetical protein; 99.4 5.2E-12 1.1E-16 119.9 16.6 195 112-320 320-543 (557)
6 KOG4441 Proteins containing BT 99.4 3.3E-11 7.1E-16 114.2 17.1 193 112-318 349-554 (571)
7 PHA02790 Kelch-like protein; P 99.3 4.9E-10 1.1E-14 104.9 20.8 184 112-317 287-477 (480)
8 PHA02713 hypothetical protein; 99.3 1.9E-10 4.1E-15 109.4 18.1 190 113-318 273-497 (557)
9 KOG4441 Proteins containing BT 99.3 1.8E-10 3.8E-15 109.3 17.5 193 112-318 301-507 (571)
10 PHA03098 kelch-like protein; P 99.2 6.4E-10 1.4E-14 106.1 18.6 193 112-318 311-519 (534)
11 PLN02153 epithiospecifier prot 99.1 2.7E-08 5.9E-13 89.4 21.3 199 112-319 50-293 (341)
12 PLN02193 nitrile-specifier pro 99.0 6.7E-08 1.4E-12 90.4 21.3 200 112-320 193-420 (470)
13 TIGR03547 muta_rot_YjhT mutatr 99.0 1.1E-07 2.3E-12 85.7 19.5 196 112-318 29-306 (346)
14 PF12937 F-box-like: F-box-lik 99.0 8.2E-11 1.8E-15 72.7 -0.7 42 1-42 1-42 (47)
15 TIGR03548 mutarot_permut cycli 98.9 1.9E-07 4.1E-12 83.3 20.5 149 164-318 87-287 (323)
16 PHA03098 kelch-like protein; P 98.9 9.4E-08 2E-12 91.3 16.2 189 113-318 265-472 (534)
17 PRK14131 N-acetylneuraminic ac 98.8 6.1E-07 1.3E-11 81.7 19.9 198 112-318 50-328 (376)
18 PHA02790 Kelch-like protein; P 98.8 1.3E-07 2.8E-12 88.7 15.5 142 164-318 286-431 (480)
19 PF00646 F-box: F-box domain; 98.8 3.4E-10 7.3E-15 70.5 -1.9 44 2-45 4-47 (48)
20 smart00256 FBOX A Receptor for 98.7 1.5E-09 3.3E-14 65.0 -1.1 39 4-42 1-39 (41)
21 PRK14131 N-acetylneuraminic ac 98.7 3.9E-06 8.5E-11 76.4 19.5 150 165-316 189-374 (376)
22 PLN02193 nitrile-specifier pro 98.7 4.5E-06 9.7E-11 78.2 20.0 196 113-320 138-361 (470)
23 PLN02153 epithiospecifier prot 98.6 4E-06 8.7E-11 75.4 18.8 150 165-320 50-235 (341)
24 TIGR03547 muta_rot_YjhT mutatr 98.6 5.9E-06 1.3E-10 74.4 18.9 130 165-300 168-329 (346)
25 TIGR03548 mutarot_permut cycli 98.4 2E-05 4.3E-10 70.3 17.4 133 112-253 88-231 (323)
26 KOG1230 Protein containing rep 98.0 0.00021 4.5E-09 63.0 13.9 207 111-322 97-352 (521)
27 KOG4693 Uncharacterized conser 98.0 0.00053 1.1E-08 57.1 14.6 215 100-323 32-289 (392)
28 KOG0281 Beta-TrCP (transducin 97.5 0.0024 5.2E-08 55.1 12.5 41 2-42 76-120 (499)
29 KOG2120 SCF ubiquitin ligase, 97.4 3.1E-05 6.7E-10 65.7 -0.8 38 2-39 99-136 (419)
30 KOG4693 Uncharacterized conser 97.3 0.0094 2E-07 49.9 13.4 180 112-300 105-310 (392)
31 KOG0379 Kelch repeat-containin 97.2 0.051 1.1E-06 51.2 18.6 202 113-321 89-312 (482)
32 KOG0379 Kelch repeat-containin 97.2 0.018 4E-07 54.2 15.4 149 166-321 89-260 (482)
33 KOG1230 Protein containing rep 96.8 0.069 1.5E-06 47.7 14.3 143 166-311 99-276 (521)
34 KOG2997 F-box protein FBX9 [Ge 96.6 0.00044 9.6E-09 59.0 -0.6 46 1-46 107-157 (366)
35 PF13964 Kelch_6: Kelch motif 95.9 0.022 4.8E-07 35.1 4.8 40 191-230 4-47 (50)
36 PF07893 DUF1668: Protein of u 95.9 0.46 1E-05 42.7 15.0 146 97-253 71-251 (342)
37 PF02191 OLF: Olfactomedin-lik 95.8 0.54 1.2E-05 40.1 14.1 123 190-320 70-213 (250)
38 PF13360 PQQ_2: PQQ-like domai 95.6 1.1 2.4E-05 37.5 19.4 191 101-316 35-236 (238)
39 smart00284 OLF Olfactomedin-li 95.3 0.82 1.8E-05 38.9 13.4 127 182-319 69-217 (255)
40 PF01344 Kelch_1: Kelch motif; 95.0 0.062 1.4E-06 32.5 4.4 36 192-227 5-43 (47)
41 KOG0274 Cdc4 and related F-box 94.6 4.4 9.5E-05 38.8 17.7 273 1-312 108-402 (537)
42 KOG4152 Host cell transcriptio 94.5 1.1 2.4E-05 41.4 12.6 158 112-276 57-246 (830)
43 COG3055 Uncharacterized protei 94.2 3.8 8.1E-05 36.4 15.8 130 164-300 195-357 (381)
44 COG3055 Uncharacterized protei 93.8 0.99 2.1E-05 39.8 10.5 113 165-281 113-268 (381)
45 PF07762 DUF1618: Protein of u 93.6 0.64 1.4E-05 35.3 8.3 68 213-280 7-98 (131)
46 PF07646 Kelch_2: Kelch motif; 92.8 0.33 7.2E-06 29.6 4.7 39 191-229 4-47 (49)
47 KOG2055 WD40 repeat protein [G 92.4 4.3 9.2E-05 37.1 12.6 114 195-317 265-381 (514)
48 TIGR01640 F_box_assoc_1 F-box 91.8 4.7 0.0001 33.8 12.2 115 196-320 3-137 (230)
49 PF07250 Glyoxal_oxid_N: Glyox 91.8 6.3 0.00014 33.4 12.6 149 164-317 45-205 (243)
50 PF13964 Kelch_6: Kelch motif 91.2 0.37 8E-06 29.5 3.6 23 111-133 27-49 (50)
51 smart00612 Kelch Kelch domain. 90.2 0.36 7.8E-06 28.7 2.8 24 164-187 14-37 (47)
52 PRK11138 outer membrane biogen 90.0 15 0.00033 33.6 20.9 107 192-315 250-358 (394)
53 PRK11138 outer membrane biogen 89.6 16 0.00035 33.4 20.9 189 101-315 119-317 (394)
54 PF13418 Kelch_4: Galactose ox 89.6 0.61 1.3E-05 28.3 3.5 36 192-227 5-44 (49)
55 PF13360 PQQ_2: PQQ-like domai 89.4 11 0.00025 31.3 17.0 136 166-315 4-145 (238)
56 PF07893 DUF1668: Protein of u 88.4 17 0.00037 32.7 13.3 101 213-317 87-214 (342)
57 COG4257 Vgb Streptogramin lyas 87.8 17 0.00037 31.3 11.8 110 111-234 209-319 (353)
58 COG1520 FOG: WD40-like repeat 87.6 18 0.00038 32.9 13.2 139 164-317 34-178 (370)
59 smart00612 Kelch Kelch domain. 87.2 2.1 4.5E-05 25.2 4.8 21 212-232 15-36 (47)
60 PF08450 SGL: SMP-30/Gluconola 87.0 17 0.00038 30.6 21.9 202 97-320 6-223 (246)
61 KOG4341 F-box protein containi 86.3 0.15 3.2E-06 46.0 -1.1 37 3-39 74-110 (483)
62 TIGR03300 assembly_YfgL outer 86.0 26 0.00057 31.7 21.3 138 165-315 155-302 (377)
63 PF07646 Kelch_2: Kelch motif; 85.9 2.3 5.1E-05 25.7 4.5 32 288-319 7-47 (49)
64 KOG3545 Olfactomedin and relat 85.7 21 0.00045 30.2 11.6 135 175-320 56-212 (249)
65 PLN02772 guanylate kinase 84.6 7.9 0.00017 35.3 8.9 71 192-265 28-107 (398)
66 PF02897 Peptidase_S9_N: Proly 84.0 35 0.00075 31.4 21.9 161 148-318 236-412 (414)
67 PF10282 Lactonase: Lactonase, 84.0 31 0.00068 30.9 13.8 115 198-319 154-286 (345)
68 PF13418 Kelch_4: Galactose ox 84.0 3.3 7.2E-05 24.9 4.6 28 290-317 10-44 (49)
69 KOG0294 WD40 repeat-containing 84.0 29 0.00062 30.4 11.9 107 193-313 47-160 (362)
70 TIGR03300 assembly_YfgL outer 83.6 34 0.00074 31.0 21.9 111 192-319 235-348 (377)
71 KOG0649 WD40 repeat protein [G 83.5 26 0.00057 29.6 12.8 109 199-320 127-246 (325)
72 PF08450 SGL: SMP-30/Gluconola 83.3 26 0.00057 29.5 13.6 106 198-317 11-129 (246)
73 TIGR03075 PQQ_enz_alc_DH PQQ-d 81.8 41 0.00089 32.3 13.2 116 192-316 63-195 (527)
74 COG2706 3-carboxymuconate cycl 81.1 40 0.00086 30.0 15.5 130 200-334 53-201 (346)
75 KOG0279 G protein beta subunit 81.1 28 0.00061 29.9 10.2 101 212-321 172-274 (315)
76 PF06433 Me-amine-dh_H: Methyl 81.0 40 0.00087 30.1 11.7 115 194-316 189-326 (342)
77 PRK11028 6-phosphogluconolacto 80.9 40 0.00086 29.9 15.5 137 164-311 11-157 (330)
78 TIGR03074 PQQ_membr_DH membran 77.2 80 0.0017 31.9 13.9 32 191-226 187-220 (764)
79 PF01344 Kelch_1: Kelch motif; 77.2 12 0.00027 22.0 6.7 40 238-279 4-47 (47)
80 KOG1274 WD40 repeat protein [G 75.9 94 0.002 31.5 19.7 202 99-316 11-224 (933)
81 PF13570 PQQ_3: PQQ-like domai 75.8 7.5 0.00016 22.3 4.1 26 192-221 15-40 (40)
82 PF12458 DUF3686: ATPase invol 75.2 24 0.00052 32.3 8.7 131 101-264 237-384 (448)
83 PF10282 Lactonase: Lactonase, 72.8 71 0.0015 28.6 24.6 168 142-318 146-332 (345)
84 PRK11028 6-phosphogluconolacto 71.8 71 0.0015 28.2 15.5 118 197-318 184-314 (330)
85 smart00564 PQQ beta-propeller 71.4 14 0.0003 19.8 4.7 25 292-316 6-30 (33)
86 TIGR03866 PQQ_ABC_repeats PQQ- 71.0 65 0.0014 27.4 22.5 119 197-323 166-293 (300)
87 PF05096 Glu_cyclase_2: Glutam 70.5 70 0.0015 27.6 15.2 140 163-319 66-213 (264)
88 PF05096 Glu_cyclase_2: Glutam 70.0 71 0.0015 27.5 15.3 111 197-319 54-167 (264)
89 KOG0289 mRNA splicing factor [ 68.4 99 0.0022 28.5 19.5 114 194-319 354-471 (506)
90 PF13415 Kelch_3: Galactose ox 66.1 6.3 0.00014 23.8 2.3 22 112-133 19-40 (49)
91 KOG0291 WD40-repeat-containing 65.4 1.5E+02 0.0033 29.5 12.5 120 195-317 313-473 (893)
92 PF01011 PQQ: PQQ enzyme repea 63.3 18 0.0004 20.4 3.8 24 294-317 2-25 (38)
93 PLN00181 protein SPA1-RELATED; 62.2 1.9E+02 0.0041 29.5 21.5 183 109-313 552-741 (793)
94 PF03088 Str_synth: Strictosid 61.8 23 0.0005 24.8 4.7 16 302-317 37-52 (89)
95 TIGR02658 TTQ_MADH_Hv methylam 61.7 1.3E+02 0.0027 27.3 22.2 112 197-317 204-338 (352)
96 KOG0647 mRNA export protein (c 60.5 88 0.0019 27.4 8.7 73 245-320 39-112 (347)
97 PF08268 FBA_3: F-box associat 60.4 28 0.00061 26.1 5.5 32 289-320 2-38 (129)
98 KOG0316 Conserved WD40 repeat- 58.1 1.2E+02 0.0025 25.8 12.9 186 101-315 27-218 (307)
99 COG2706 3-carboxymuconate cycl 56.8 1.5E+02 0.0032 26.6 19.8 151 163-319 165-332 (346)
100 KOG0295 WD40 repeat-containing 55.8 1.1E+02 0.0024 27.5 8.7 67 245-317 303-371 (406)
101 cd00200 WD40 WD40 domain, foun 55.5 1.2E+02 0.0025 25.0 20.8 93 212-314 157-253 (289)
102 KOG4152 Host cell transcriptio 55.2 13 0.00029 34.7 3.3 88 175-265 17-115 (830)
103 PF13013 F-box-like_2: F-box-l 53.7 2.7 5.8E-05 30.7 -1.1 28 2-29 23-50 (109)
104 COG4257 Vgb Streptogramin lyas 52.4 1.6E+02 0.0035 25.7 15.6 118 195-320 196-315 (353)
105 PF13859 BNR_3: BNR repeat-lik 51.5 1.8E+02 0.0038 25.9 9.7 107 165-275 88-212 (310)
106 PF03178 CPSF_A: CPSF A subuni 51.3 1.7E+02 0.0037 25.8 13.6 104 212-325 62-174 (321)
107 KOG2321 WD40 repeat protein [G 49.9 1.8E+02 0.0039 28.1 9.5 111 200-317 147-265 (703)
108 PRK04792 tolB translocation pr 49.8 2.2E+02 0.0049 26.6 20.1 187 111-319 241-434 (448)
109 KOG0266 WD40 repeat-containing 49.7 2.3E+02 0.0049 26.7 12.9 116 195-317 167-283 (456)
110 KOG2106 Uncharacterized conser 49.5 2.4E+02 0.0051 26.8 13.6 38 196-233 285-329 (626)
111 KOG3881 Uncharacterized conser 49.3 2.1E+02 0.0045 26.1 14.7 57 164-222 172-236 (412)
112 KOG0639 Transducin-like enhanc 49.3 61 0.0013 30.4 6.5 74 212-293 487-563 (705)
113 KOG0293 WD40 repeat-containing 49.1 2.2E+02 0.0047 26.3 14.7 68 244-317 405-477 (519)
114 KOG0639 Transducin-like enhanc 48.7 1E+02 0.0023 29.0 7.8 96 212-315 440-544 (705)
115 KOG0649 WD40 repeat protein [G 48.6 95 0.0021 26.4 6.9 62 256-317 81-151 (325)
116 PRK05137 tolB translocation pr 48.3 2.3E+02 0.005 26.3 21.1 187 111-319 225-421 (435)
117 KOG0300 WD40 repeat-containing 48.1 1.1E+02 0.0024 27.0 7.5 61 254-319 376-437 (481)
118 KOG0315 G-protein beta subunit 47.8 1.8E+02 0.0039 24.9 13.3 100 211-312 145-247 (311)
119 cd00200 WD40 WD40 domain, foun 47.3 1.6E+02 0.0034 24.2 20.9 94 212-315 115-212 (289)
120 KOG0283 WD40 repeat-containing 47.0 41 0.00089 33.1 5.3 55 255-315 431-486 (712)
121 KOG0292 Vesicle coat complex C 46.6 82 0.0018 32.0 7.2 79 243-325 213-296 (1202)
122 KOG0318 WD40 repeat stress pro 46.2 2.2E+02 0.0047 27.2 9.4 33 284-316 490-523 (603)
123 KOG2502 Tub family proteins [G 45.2 12 0.00026 33.2 1.3 36 2-37 46-89 (355)
124 TIGR02658 TTQ_MADH_Hv methylam 44.7 2.4E+02 0.0052 25.5 14.6 97 165-265 27-137 (352)
125 KOG0289 mRNA splicing factor [ 44.1 2.7E+02 0.0058 25.9 12.7 105 165-280 369-474 (506)
126 COG3386 Gluconolactonase [Carb 43.9 2.3E+02 0.005 25.1 11.2 32 199-233 37-68 (307)
127 KOG1963 WD40 repeat protein [G 42.6 2.3E+02 0.005 28.5 9.6 104 214-317 434-546 (792)
128 PF07250 Glyoxal_oxid_N: Glyox 41.4 1.1E+02 0.0023 26.1 6.5 88 213-302 47-138 (243)
129 KOG2437 Muskelin [Signal trans 41.2 39 0.00085 31.8 4.0 123 191-317 263-419 (723)
130 PF02239 Cytochrom_D1: Cytochr 39.8 2.9E+02 0.0064 25.1 12.3 98 212-319 16-118 (369)
131 PRK00178 tolB translocation pr 39.8 3.1E+02 0.0067 25.3 20.3 186 112-318 223-414 (430)
132 KOG0294 WD40 repeat-containing 39.2 2.8E+02 0.006 24.6 14.3 91 164-265 188-282 (362)
133 KOG0647 mRNA export protein (c 39.2 2.7E+02 0.0059 24.5 10.9 90 212-313 94-187 (347)
134 PF06058 DCP1: Dcp1-like decap 38.8 52 0.0011 24.6 3.8 27 295-321 22-48 (122)
135 PF15408 PH_7: Pleckstrin homo 37.7 4.7 0.0001 27.6 -1.7 24 18-41 76-99 (104)
136 KOG0301 Phospholipase A2-activ 37.3 4.2E+02 0.0092 26.2 12.9 87 212-310 200-288 (745)
137 KOG0310 Conserved WD40 repeat- 37.0 3.6E+02 0.0078 25.3 14.9 136 164-313 47-187 (487)
138 COG4946 Uncharacterized protei 36.9 3.7E+02 0.008 25.4 13.2 108 197-318 330-439 (668)
139 KOG0319 WD40-repeat-containing 36.4 3.7E+02 0.0079 26.8 9.6 95 213-315 41-140 (775)
140 KOG0315 G-protein beta subunit 35.7 2.8E+02 0.0062 23.8 15.2 178 111-313 19-200 (311)
141 TIGR03866 PQQ_ABC_repeats PQQ- 35.3 2.7E+02 0.0059 23.4 21.9 135 164-314 52-191 (300)
142 KOG0265 U5 snRNP-specific prot 34.8 2.2E+02 0.0049 25.0 7.3 65 245-315 58-125 (338)
143 cd00260 Sialidase Sialidases o 34.2 3.4E+02 0.0073 24.2 11.4 84 193-278 150-241 (351)
144 PF10902 DUF2693: Protein of u 32.6 41 0.0009 23.2 2.2 19 303-321 50-68 (83)
145 KOG0319 WD40-repeat-containing 32.5 5.2E+02 0.011 25.8 14.4 189 97-313 25-225 (775)
146 KOG1273 WD40 repeat protein [G 32.5 3.6E+02 0.0079 24.0 9.8 51 212-265 45-96 (405)
147 PF13854 Kelch_5: Kelch motif 31.9 1.1E+02 0.0023 17.6 4.0 27 238-264 7-38 (42)
148 PF14157 YmzC: YmzC-like prote 31.2 74 0.0016 20.5 2.9 15 303-317 42-56 (63)
149 PF14870 PSII_BNR: Photosynthe 30.9 3.8E+02 0.0082 23.7 13.0 155 169-334 126-286 (302)
150 PRK05137 tolB translocation pr 30.4 4.5E+02 0.0097 24.4 22.1 185 112-317 182-373 (435)
151 KOG3926 F-box proteins [Amino 30.0 15 0.00033 31.4 -0.4 38 2-39 203-241 (332)
152 PF08662 eIF2A: Eukaryotic tra 28.9 3.1E+02 0.0068 22.1 8.2 94 213-319 84-188 (194)
153 PRK04043 tolB translocation pr 28.8 4.8E+02 0.01 24.2 20.6 185 111-319 212-409 (419)
154 KOG4547 WD40 repeat-containing 28.3 5.4E+02 0.012 24.7 9.9 91 212-314 80-176 (541)
155 PF07569 Hira: TUP1-like enhan 28.0 3.5E+02 0.0077 22.5 7.8 85 229-317 6-102 (219)
156 PF07370 DUF1489: Protein of u 27.1 42 0.00091 25.5 1.6 27 195-221 44-71 (137)
157 KOG0265 U5 snRNP-specific prot 27.0 4.4E+02 0.0096 23.3 11.0 50 212-265 112-164 (338)
158 KOG0318 WD40 repeat stress pro 26.2 5.9E+02 0.013 24.4 12.1 99 212-314 212-312 (603)
159 KOG0321 WD40 repeat-containing 25.6 2.8E+02 0.0061 27.1 6.9 106 199-313 65-178 (720)
160 PRK01742 tolB translocation pr 24.9 5.6E+02 0.012 23.7 20.3 140 164-317 227-368 (429)
161 PF12768 Rax2: Cortical protei 24.7 4.7E+02 0.01 22.8 8.1 63 164-229 15-81 (281)
162 KOG1539 WD repeat protein [Gen 24.0 5.4E+02 0.012 26.2 8.6 66 195-265 456-524 (910)
163 KOG0772 Uncharacterized conser 24.0 6.2E+02 0.013 24.3 8.6 63 245-313 328-397 (641)
164 PF06881 Elongin_A: RNA polyme 23.9 36 0.00079 24.8 0.8 28 1-28 4-31 (109)
165 PF13088 BNR_2: BNR repeat-lik 23.9 4.5E+02 0.0097 22.2 14.7 127 164-296 132-274 (275)
166 KOG0293 WD40 repeat-containing 23.4 1.7E+02 0.0038 26.9 4.9 64 245-313 323-387 (519)
167 PF02191 OLF: Olfactomedin-lik 23.0 4.4E+02 0.0095 22.5 7.2 40 193-232 175-215 (250)
168 PTZ00421 coronin; Provisional 23.0 6.7E+02 0.015 23.9 13.9 110 198-316 87-204 (493)
169 KOG2096 WD40 repeat protein [G 22.9 2.2E+02 0.0047 25.4 5.2 64 244-309 96-162 (420)
170 cd00216 PQQ_DH Dehydrogenases 22.1 6.8E+02 0.015 23.7 10.1 82 166-253 367-456 (488)
171 TIGR03032 conserved hypothetic 21.4 3.9E+02 0.0085 23.8 6.6 54 191-253 205-259 (335)
172 cd01207 Ena-Vasp Enabled-VASP- 21.2 3.1E+02 0.0067 20.1 5.1 41 112-158 9-51 (111)
173 PRK04043 tolB translocation pr 21.0 6.8E+02 0.015 23.3 13.0 102 212-320 213-319 (419)
174 PTZ00334 trans-sialidase; Prov 20.9 7.3E+02 0.016 25.3 9.1 80 192-275 263-349 (780)
175 PF02393 US22: US22 like; Int 20.5 1.9E+02 0.004 21.3 4.1 24 295-318 84-107 (125)
176 KOG1445 Tumor-specific antigen 20.0 6.5E+02 0.014 24.9 8.1 67 246-313 92-161 (1012)
No 1
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=100.00 E-value=2.4e-34 Score=243.73 Aligned_cols=211 Identities=21% Similarity=0.373 Sum_probs=161.6
Q ss_pred EeeeCceEEEccCCCEEEEEcccccceeecCCCCCCCCCCCCCCeeEEee--eCCceEEEEEeeEe--CCCcEEEEEEeC
Q 047931 98 VGSCNGLVCTTPKPKIFFVLNPLTRESKRIPDVPFEPFPRSSDDLYGFGC--TAEDCKFIKVSFGL--KPNMSVAIFSLR 173 (339)
Q Consensus 98 ~~s~~GLl~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~--~~~~ykvv~~~~~~--~~~~~~~vyss~ 173 (339)
++|||||+|+... ..++||||+||+++.||+++... ........|||| .+++|||+++.... .....++||+++
T Consensus 1 ~~sCnGLlc~~~~-~~~~V~NP~T~~~~~LP~~~~~~-~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~~~~~~~Vys~~ 78 (230)
T TIGR01640 1 VVPCDGLICFSYG-KRLVVWNPSTGQSRWLPTPKSRR-SNKESDTYFLGYDPIEKQYKVLCFSDRSGNRNQSEHQVYTLG 78 (230)
T ss_pred CcccceEEEEecC-CcEEEECCCCCCEEecCCCCCcc-cccccceEEEeecccCCcEEEEEEEeecCCCCCccEEEEEeC
Confidence 4799999998864 78999999999999999866421 001111578999 78999999997321 135789999999
Q ss_pred CCceEEecccCCccCccCCCceEECCeEEEEEecC-CCC-eEEEEEECCCceee-eecCCCCCCC-CceeEEEEECCeEE
Q 047931 174 MNSWRRVLASGYTRPLINVPGTLTNGALHWRLQKH-GGD-FVLAAFDLVEERFK-EFPLPDASTS-FRFFGTGVLGDCLC 249 (339)
Q Consensus 174 ~~~W~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~-~~~-~~il~fD~~~~~~~-~i~lP~~~~~-~~~~~l~~~~G~L~ 249 (339)
+++||.+...+.... ....+|++||++||++... +.. ..|++||+++|+|+ .+++|..... .....|++++|+|+
T Consensus 79 ~~~Wr~~~~~~~~~~-~~~~~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~~P~~~~~~~~~~~L~~~~G~L~ 157 (230)
T TIGR01640 79 SNSWRTIECSPPHHP-LKSRGVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIPLPCGNSDSVDYLSLINYKGKLA 157 (230)
T ss_pred CCCccccccCCCCcc-ccCCeEEECCEEEEEEEECCCCCcEEEEEEEcccceEeeeeecCccccccccceEEEEECCEEE
Confidence 999999974333222 2233899999999999765 122 38999999999999 5899976532 13467999999999
Q ss_pred EEEe--CCCeEEEEEEcccCCCCCeEEEEEecC-C---C--CeeEEEEEeCCeEEEEECC--cE-EEEEECCCC
Q 047931 250 LQFF--KGKMKEHWIMKEYGVKESWTRVFIHQD-P---N--NVWPLCLWKNSTKLLVINR--KN-LLVCDCNNE 312 (339)
Q Consensus 250 ~v~~--~~~~l~iW~l~~~~~~~~W~~~~~i~~-~---~--~~~~~~~~~~~~i~~~~~~--~~-~~~yd~~t~ 312 (339)
++.. ....++||+|++++. .+|+++++|+. . + ...|+++..+|+|++.... .. ++.||++++
T Consensus 158 ~v~~~~~~~~~~IWvl~d~~~-~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~~~~~~~~~y~~~~~ 230 (230)
T TIGR01640 158 VLKQKKDTNNFDLWVLNDAGK-QEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCEDENPFYIFYYNVGEN 230 (230)
T ss_pred EEEecCCCCcEEEEEECCCCC-CceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeCCCCceEEEEEeccCC
Confidence 9998 335699999999875 45999999974 2 1 1458899889999998764 34 999999885
No 2
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=99.75 E-value=1.7e-16 Score=126.75 Aligned_cols=140 Identities=31% Similarity=0.594 Sum_probs=103.3
Q ss_pred ceEECCeEEEEEecC-CC-CeEEEEEECCCcee-eeecCCCCCC-CCceeEEEEE-CCeEEEEEe--CCCeEEEEEEccc
Q 047931 194 GTLTNGALHWRLQKH-GG-DFVLAAFDLVEERF-KEFPLPDAST-SFRFFGTGVL-GDCLCLQFF--KGKMKEHWIMKEY 266 (339)
Q Consensus 194 ~v~~~G~lyw~~~~~-~~-~~~il~fD~~~~~~-~~i~lP~~~~-~~~~~~l~~~-~G~L~~v~~--~~~~l~iW~l~~~ 266 (339)
+|++||++||++... .. ...|++||+++|+| +.+++|.... ......|++. +|+||++.. ....++||+|+++
T Consensus 1 gV~vnG~~hW~~~~~~~~~~~~IlsFDl~~E~F~~~~~lP~~~~~~~~~~~L~~v~~~~L~~~~~~~~~~~~~IWvm~~~ 80 (164)
T PF07734_consen 1 GVFVNGALHWLAYDENNDEKDFILSFDLSTEKFGRSLPLPFCNDDDDDSVSLSVVRGDCLCVLYQCDETSKIEIWVMKKY 80 (164)
T ss_pred CEEECCEEEeeEEecCCCCceEEEEEeccccccCCEECCCCccCccCCEEEEEEecCCEEEEEEeccCCccEEEEEEeee
Confidence 599999999999887 22 23899999999999 8889998876 3345677555 789999976 4557999999987
Q ss_pred C-CCCCeEEEEEecCC-C---C----eeEEEEEeCCeEEEEECC-------cEEEEEECCCCcEEEeEEeCC-CCcccee
Q 047931 267 G-VKESWTRVFIHQDP-N---N----VWPLCLWKNSTKLLVINR-------KNLLVCDCNNEGSEDVAVADV-PNWNSAC 329 (339)
Q Consensus 267 ~-~~~~W~~~~~i~~~-~---~----~~~~~~~~~~~i~~~~~~-------~~~~~yd~~t~~~~~v~~~~~-~~~~~~~ 329 (339)
+ ..++|++.++|+.+ . . ...+.+..++++++..+. ..++.++ +++..+++.+... ..++..+
T Consensus 81 ~~~~~SWtK~~~i~~~~~~~~~~~~~~~~~~i~~~~~vlv~~~~~~~~~~~~~i~i~g-~~~~~~~~~~~~~~~~~~~~~ 159 (164)
T PF07734_consen 81 GYGKESWTKLFTIDLPPLPSLFFHFRNPSFFIDEEKKVLVCCDKETQREEKNKIYIVG-EDGKFIEVDIEDKSSCWPSIC 159 (164)
T ss_pred ccCcceEEEEEEEecCCCCCcccccccceEEEeCCCeEEEEEcCCCCccceeEEEEEc-CCCEEEEcccccCCCCCCCEE
Confidence 5 36899999999752 1 1 122334445567765542 2377887 7788888877433 4678888
Q ss_pred EEecC
Q 047931 330 VYVES 334 (339)
Q Consensus 330 ~y~~s 334 (339)
.|+||
T Consensus 160 ~YvpS 164 (164)
T PF07734_consen 160 NYVPS 164 (164)
T ss_pred EECCC
Confidence 99997
No 3
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=99.65 E-value=4.7e-15 Score=113.55 Aligned_cols=104 Identities=19% Similarity=0.329 Sum_probs=82.3
Q ss_pred ceEECCeEEEEEecC-CCCeEEEEEECCCceeeeecCCC-CCCCCceeEEEEECCeEEEEEe-CC---CeEEEEEEcccC
Q 047931 194 GTLTNGALHWRLQKH-GGDFVLAAFDLVEERFKEFPLPD-ASTSFRFFGTGVLGDCLCLQFF-KG---KMKEHWIMKEYG 267 (339)
Q Consensus 194 ~v~~~G~lyw~~~~~-~~~~~il~fD~~~~~~~~i~lP~-~~~~~~~~~l~~~~G~L~~v~~-~~---~~l~iW~l~~~~ 267 (339)
|+++||.+||++... .....|++||+++|+|+.|++|. .........|.+++|+|+++.. .. ..++||+|+|++
T Consensus 1 gicinGvly~~a~~~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD~~ 80 (129)
T PF08268_consen 1 GICINGVLYWLAWSEDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLEDYE 80 (129)
T ss_pred CEEECcEEEeEEEECCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEeeccc
Confidence 589999999999883 34579999999999999999992 2222256789999999999988 32 469999999987
Q ss_pred CCCCeEEEEEecCC----C----CeeEEEEEeCCeEEEE
Q 047931 268 VKESWTRVFIHQDP----N----NVWPLCLWKNSTKLLV 298 (339)
Q Consensus 268 ~~~~W~~~~~i~~~----~----~~~~~~~~~~~~i~~~ 298 (339)
. ++|++.+.+-+. . ...+.++.++|+|++.
T Consensus 81 k-~~Wsk~~~~lp~~~~~~~~~~~~~~~g~~~~Geiv~~ 118 (129)
T PF08268_consen 81 K-QEWSKKHIVLPPSWQHFVHDCDFSFVGVTDTGEIVFA 118 (129)
T ss_pred c-ceEEEEEEECChHHhcccCCcEEEEEEEcCCCEEEEE
Confidence 4 789988765331 1 2678888888998887
No 4
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=99.46 E-value=1.2e-11 Score=109.03 Aligned_cols=289 Identities=15% Similarity=0.070 Sum_probs=144.5
Q ss_pred CCCcHHHHHHHHccCC-cccceeeeeccccccccCCChHHHHHHhcccCCCc-EEEecCCCccccCCCcccccceeeeec
Q 047931 2 ATIPHEIIFEILLRLP-VKSLCRFKCVSSSWLALISDPQFVMLQLHRNKRRN-LILSNLSGNSAYNYSIDEEKLVSVELD 79 (339)
Q Consensus 2 ~~Lp~Dll~eIL~rLP-~~~l~r~~~VcK~W~~li~sp~F~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (339)
++||+|||..|..||| ..++.|||+|||+||+.+....= +.+ .++.+ +++.... .+..... ++. ......
T Consensus 5 s~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~~~~-~~~---~~~~~~~~~~~~~-~~~~~~~-~~~--~~~~~~ 76 (373)
T PLN03215 5 STLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSGVGK-KNP---FRTRPLILFNPIN-PSETLTD-DRS--YISRPG 76 (373)
T ss_pred hhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhcccccc-cCC---cccccccccCccc-CCCCccc-ccc--cccccc
Confidence 5799999999999998 77999999999999998764210 000 01111 1211100 0000000 000 000000
Q ss_pred CCCCcCCCCCCCCceeEE---EeeeCceEEEcc---CCCEEEEEcccccceeecCCCCCCCCCCCCCCeeEEee------
Q 047931 80 FPLEQDANRDGSGYLARI---VGSCNGLVCTTP---KPKIFFVLNPLTRESKRIPDVPFEPFPRSSDDLYGFGC------ 147 (339)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~---~~s~~GLl~~~~---~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~------ 147 (339)
..+... .+ ..+ .++..|.|.... ..+.+.+.||+++....+|+.... .-.+.....+-+|
T Consensus 77 ~~ls~~---~~----~r~~~~~~~~~~WLik~~~~~~~~~~~Ll~PLsr~~~~~~~~~ln-ll~f~v~ei~~~y~l~~~~ 148 (373)
T PLN03215 77 AFLSRA---AF----FRVTLSSSPSKGWLIKSDMDVNSGRFHLLNPLSRLPLRHSSESVD-LLEFTVSEIREAYQVLDWA 148 (373)
T ss_pred ceeeee---EE----EEeecCCCCCCCcEEEEeccccCCccEecCccccCccCCCCccce-eeeeEEEEccceEEEEecc
Confidence 000000 00 011 123467665443 347899999999997766642211 0001000011111
Q ss_pred ----eCCce--EEEEEeeEeCCC---cEEEEEEe------CCCceEEecccCCccCccCCCceEECCeEEEEEecCCCCe
Q 047931 148 ----TAEDC--KFIKVSFGLKPN---MSVAIFSL------RMNSWRRVLASGYTRPLINVPGTLTNGALHWRLQKHGGDF 212 (339)
Q Consensus 148 ----~~~~y--kvv~~~~~~~~~---~~~~vyss------~~~~W~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~ 212 (339)
....| +++... ...+. ..+-|+.. ..+.|..++..... -..-|+.+|.+|.+...+
T Consensus 149 ~~~~~~~~~~~~~~~~~-~~~~~~~~~vl~i~~~g~l~~w~~~~Wt~l~~~~~~----~~DIi~~kGkfYAvD~~G---- 219 (373)
T PLN03215 149 KRRETRPGYQRSALVKV-KEGDNHRDGVLGIGRDGKINYWDGNVLKALKQMGYH----FSDIIVHKGQTYALDSIG---- 219 (373)
T ss_pred cccccccceeEEEEEEe-ecCCCcceEEEEEeecCcEeeecCCeeeEccCCCce----eeEEEEECCEEEEEcCCC----
Confidence 00012 111110 11111 11122211 14788888643222 134689999999996654
Q ss_pred EEEEEECCCceeeeec--CCCCC--CC-CceeEEEEECCeEEEEEe--C---------------CCeEEEEEEcccCCCC
Q 047931 213 VLAAFDLVEERFKEFP--LPDAS--TS-FRFFGTGVLGDCLCLQFF--K---------------GKMKEHWIMKEYGVKE 270 (339)
Q Consensus 213 ~il~fD~~~~~~~~i~--lP~~~--~~-~~~~~l~~~~G~L~~v~~--~---------------~~~l~iW~l~~~~~~~ 270 (339)
.+.++|.+-+ .+.+. +.... +. .....|+++.|.|++|.. . ...++|+.++. ...
T Consensus 220 ~l~~i~~~l~-i~~v~~~i~~~~~~g~~~~~~yLVEs~GdLLmV~R~~~~~~~~~~~~~~~~~~t~~f~VfklD~--~~~ 296 (373)
T PLN03215 220 IVYWINSDLE-FSRFGTSLDENITDGCWTGDRRFVECCGELYIVERLPKESTWKRKADGFEYSRTVGFKVYKFDD--ELA 296 (373)
T ss_pred eEEEEecCCc-eeeecceecccccCCcccCceeEEEECCEEEEEEEEccCcccccccccccccceeEEEEEEEcC--CCC
Confidence 6777774322 12221 11001 10 134678999999999988 1 13578888874 346
Q ss_pred CeEEEEEecCC---CC-eeEEEEE-------eCCeEEEEECCcEEEEEECCCCcEEEeEE
Q 047931 271 SWTRVFIHQDP---NN-VWPLCLW-------KNSTKLLVINRKNLLVCDCNNEGSEDVAV 319 (339)
Q Consensus 271 ~W~~~~~i~~~---~~-~~~~~~~-------~~~~i~~~~~~~~~~~yd~~t~~~~~v~~ 319 (339)
+|+++.+++.. +| -..+++. ..+.|++ .++....+||++.++...+..
T Consensus 297 ~WveV~sLgd~aLFlG~~~s~sv~a~e~pG~k~NcIYF-tdd~~~~v~~~~dg~~~~~~~ 355 (373)
T PLN03215 297 KWMEVKTLGDNAFVMATDTCFSVLAHEFYGCLPNSIYF-TEDTMPKVFKLDNGNGSSIET 355 (373)
T ss_pred cEEEecccCCeEEEEECCccEEEecCCCCCccCCEEEE-ECCCcceEEECCCCCccceEe
Confidence 89999888652 11 1111111 1223555 455568899999999776643
No 5
>PHA02713 hypothetical protein; Provisional
Probab=99.43 E-value=5.2e-12 Score=119.94 Aligned_cols=195 Identities=7% Similarity=0.063 Sum_probs=127.1
Q ss_pred CEEEEEcccccceeecCCCCCCCCCCCCCCeeEEeeeCCceEEEEEee-E-eCCCcEEEEEEeCCCceEEecccCCccCc
Q 047931 112 KIFFVLNPLTRESKRIPDVPFEPFPRSSDDLYGFGCTAEDCKFIKVSF-G-LKPNMSVAIFSLRMNSWRRVLASGYTRPL 189 (339)
Q Consensus 112 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~~~~~ykvv~~~~-~-~~~~~~~~vyss~~~~W~~~~~~~~~~~~ 189 (339)
+.+..+||.+++|..+|+++.. +.. .+.....+ +|..++. . ......+++|+..++.|..++.+|...
T Consensus 320 ~~v~~Yd~~~n~W~~~~~m~~~---R~~---~~~~~~~g--~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r-- 389 (557)
T PHA02713 320 NKVYKINIENKIHVELPPMIKN---RCR---FSLAVIDD--TIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIAL-- 389 (557)
T ss_pred ceEEEEECCCCeEeeCCCCcch---hhc---eeEEEECC--EEEEECCcCCCCCCceEEEEECCCCeEEECCCCCccc--
Confidence 4688999999999999998865 111 11111112 2332220 1 112457999999999999998887764
Q ss_pred cCCCceEECCeEEEEEecCC--------------------CCeEEEEEECCCceeeee-cCCCCCCCCceeEEEEECCeE
Q 047931 190 INVPGTLTNGALHWRLQKHG--------------------GDFVLAAFDLVEERFKEF-PLPDASTSFRFFGTGVLGDCL 248 (339)
Q Consensus 190 ~~~~~v~~~G~lyw~~~~~~--------------------~~~~il~fD~~~~~~~~i-~lP~~~~~~~~~~l~~~~G~L 248 (339)
.....+.++|.+|.+++..+ ....+.+||+++++|+.+ ++|... ....+++.+|+|
T Consensus 390 ~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r---~~~~~~~~~~~I 466 (557)
T PHA02713 390 SSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGT---IRPGVVSHKDDI 466 (557)
T ss_pred ccccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCccc---ccCcEEEECCEE
Confidence 33456889999999976431 024689999999999987 444443 345678999999
Q ss_pred EEEEe-CCCeEEEEEEcccC-CC-CCeEEEEEecCCCCeeEEEEEeCCeEEEEECCc---EEEEEECCCCcEEEeEEe
Q 047931 249 CLQFF-KGKMKEHWIMKEYG-VK-ESWTRVFIHQDPNNVWPLCLWKNSTKLLVINRK---NLLVCDCNNEGSEDVAVA 320 (339)
Q Consensus 249 ~~v~~-~~~~l~iW~l~~~~-~~-~~W~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~---~~~~yd~~t~~~~~v~~~ 320 (339)
|++++ .+.....=..+.|+ .. .+|+.+..++.+....-+++ -+|.|++..+.. .+-.||++|++|+.+.-+
T Consensus 467 Yv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~-~~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~~~~ 543 (557)
T PHA02713 467 YVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTIL-HDNTIMMLHCYESYMLQDTFNVYTYEWNHICHQ 543 (557)
T ss_pred EEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEE-ECCEEEEEeeecceeehhhcCcccccccchhhh
Confidence 99987 22111111123343 23 47999888866431222222 266788776532 388999999999998543
No 6
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.36 E-value=3.3e-11 Score=114.23 Aligned_cols=193 Identities=16% Similarity=0.093 Sum_probs=131.3
Q ss_pred CEEEEEcccccceeecCCCCCCCCCCCCCCeeEEeeeCCceEEEEEe--eEeCCCcEEEEEEeCCCceEEecccCCccCc
Q 047931 112 KIFFVLNPLTRESKRIPDVPFEPFPRSSDDLYGFGCTAEDCKFIKVS--FGLKPNMSVAIFSLRMNSWRRVLASGYTRPL 189 (339)
Q Consensus 112 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~~~~~ykvv~~~--~~~~~~~~~~vyss~~~~W~~~~~~~~~~~~ 189 (339)
+....+||.+.+|..+|++... ..++|...-..++.++. ........+|.|+..++.|..++.++.. .
T Consensus 349 ~~ve~YD~~~~~W~~~a~M~~~--------R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~--r 418 (571)
T KOG4441|consen 349 SSVERYDPRTNQWTPVAPMNTK--------RSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTR--R 418 (571)
T ss_pred ceEEEecCCCCceeccCCccCc--------cccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcc--e
Confidence 5789999999999999999876 34444411222333332 0112356899999999999999888764 3
Q ss_pred cCCCceEECCeEEEEEecCC---CCeEEEEEECCCceeeee-cCCCCCCCCceeEEEEECCeEEEEEeCCCeEEEEEEcc
Q 047931 190 INVPGTLTNGALHWRLQKHG---GDFVLAAFDLVEERFKEF-PLPDASTSFRFFGTGVLGDCLCLQFFKGKMKEHWIMKE 265 (339)
Q Consensus 190 ~~~~~v~~~G~lyw~~~~~~---~~~~il~fD~~~~~~~~i-~lP~~~~~~~~~~l~~~~G~L~~v~~~~~~l~iW~l~~ 265 (339)
....++.++|.+|-+++..+ ....+.+||+.+++|+.+ +++... ....+++++|+||++++....-.+=..+-
T Consensus 419 ~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R---~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ 495 (571)
T KOG4441|consen 419 SGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRR---SGFGVAVLNGKIYVVGGFDGTSALSSVER 495 (571)
T ss_pred eeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCccccc---ccceEEEECCEEEEECCccCCCccceEEE
Confidence 44567899999999988652 347999999999999987 455444 45568999999999999221211112333
Q ss_pred cC-CCCCeEEEEEecCCCCeeEEEEEeCCeEEEEECC------cEEEEEECCCCcEEEeE
Q 047931 266 YG-VKESWTRVFIHQDPNNVWPLCLWKNSTKLLVINR------KNLLVCDCNNEGSEDVA 318 (339)
Q Consensus 266 ~~-~~~~W~~~~~i~~~~~~~~~~~~~~~~i~~~~~~------~~~~~yd~~t~~~~~v~ 318 (339)
|+ ...+|..+..+..+. ...-++..++.+++..+. ..+-.||+++++|+.+.
T Consensus 496 ydp~~~~W~~v~~m~~~r-s~~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~W~~~~ 554 (571)
T KOG4441|consen 496 YDPETNQWTMVAPMTSPR-SAVGVVVLGGKLYAVGGFDGNNNLNTVECYDPETDTWTEVT 554 (571)
T ss_pred EcCCCCceeEcccCcccc-ccccEEEECCEEEEEecccCccccceeEEcCCCCCceeeCC
Confidence 33 346899986665532 112122235566665542 24999999999999883
No 7
>PHA02790 Kelch-like protein; Provisional
Probab=99.29 E-value=4.9e-10 Score=104.92 Aligned_cols=184 Identities=15% Similarity=0.015 Sum_probs=121.4
Q ss_pred CEEEEEcccccceeecCCCCCCCCCCCCCCeeEEeeeCCceEEEEEeeEeCCCcEEEEEEeCCCceEEecccCCccCccC
Q 047931 112 KIFFVLNPLTRESKRIPDVPFEPFPRSSDDLYGFGCTAEDCKFIKVSFGLKPNMSVAIFSLRMNSWRRVLASGYTRPLIN 191 (339)
Q Consensus 112 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~~~~~ykvv~~~~~~~~~~~~~vyss~~~~W~~~~~~~~~~~~~~ 191 (339)
.....+||.+++|..+|+++.+ +.......+ .+ ++..+. .......++.|+..++.|..++.+|... ..
T Consensus 287 ~~v~~Ydp~~~~W~~~~~m~~~---r~~~~~v~~---~~--~iYviG-G~~~~~sve~ydp~~n~W~~~~~l~~~r--~~ 355 (480)
T PHA02790 287 NNAIAVNYISNNWIPIPPMNSP---RLYASGVPA---NN--KLYVVG-GLPNPTSVERWFHGDAAWVNMPSLLKPR--CN 355 (480)
T ss_pred CeEEEEECCCCEEEECCCCCch---hhcceEEEE---CC--EEEEEC-CcCCCCceEEEECCCCeEEECCCCCCCC--cc
Confidence 4567789999999999998765 111111111 12 233322 1112356899999999999998887653 34
Q ss_pred CCceEECCeEEEEEecCCCCeEEEEEECCCceeeeec-CCCCCCCCceeEEEEECCeEEEEEeCCCeEEEEEEcccCCCC
Q 047931 192 VPGTLTNGALHWRLQKHGGDFVLAAFDLVEERFKEFP-LPDASTSFRFFGTGVLGDCLCLQFFKGKMKEHWIMKEYGVKE 270 (339)
Q Consensus 192 ~~~v~~~G~lyw~~~~~~~~~~il~fD~~~~~~~~i~-lP~~~~~~~~~~l~~~~G~L~~v~~~~~~l~iW~l~~~~~~~ 270 (339)
..++.++|.+|-+++..+....+..||+++++|+.++ +|... .....++.+|+|++++.. .+++.. ...
T Consensus 356 ~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r---~~~~~~~~~~~IYv~GG~---~e~ydp----~~~ 425 (480)
T PHA02790 356 PAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPH---YKSCALVFGRRLFLVGRN---AEFYCE----SSN 425 (480)
T ss_pred cEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCcc---ccceEEEECCEEEEECCc---eEEecC----CCC
Confidence 4578999999999876422346889999999999873 43333 334667889999998753 233322 246
Q ss_pred CeEEEEEecCCCCeeEEEEEeCCeEEEEECC------cEEEEEECCCCcEEEe
Q 047931 271 SWTRVFIHQDPNNVWPLCLWKNSTKLLVINR------KNLLVCDCNNEGSEDV 317 (339)
Q Consensus 271 ~W~~~~~i~~~~~~~~~~~~~~~~i~~~~~~------~~~~~yd~~t~~~~~v 317 (339)
+|+....++.+......+ .-+|+|+++.+. ..+..||+++++|+..
T Consensus 426 ~W~~~~~m~~~r~~~~~~-v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~W~~~ 477 (480)
T PHA02790 426 TWTLIDDPIYPRDNPELI-IVDNKLLLIGGFYRGSYIDTIEVYNNRTYSWNIW 477 (480)
T ss_pred cEeEcCCCCCCccccEEE-EECCEEEEECCcCCCcccceEEEEECCCCeEEec
Confidence 899877665432112222 336778887652 2489999999999865
No 8
>PHA02713 hypothetical protein; Provisional
Probab=99.29 E-value=1.9e-10 Score=109.40 Aligned_cols=190 Identities=13% Similarity=0.166 Sum_probs=123.8
Q ss_pred EEEEEcccccceeecCCCCCCCCCCCCCCeeEEee-eCCceEEEEEeeEe--C--CCcEEEEEEeCCCceEEecccCCcc
Q 047931 113 IFFVLNPLTRESKRIPDVPFEPFPRSSDDLYGFGC-TAEDCKFIKVSFGL--K--PNMSVAIFSLRMNSWRRVLASGYTR 187 (339)
Q Consensus 113 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~-~~~~ykvv~~~~~~--~--~~~~~~vyss~~~~W~~~~~~~~~~ 187 (339)
....+||.+++|..+++++.. ..+++. .-+. +|..++ .. . ....++.|+..++.|..++.++...
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~--------r~~~~~a~l~~-~IYviG-G~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R 342 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNH--------IINYASAIVDN-EIIIAG-GYNFNNPSLNKVYKINIENKIHVELPPMIKNR 342 (557)
T ss_pred CEEEEeCCCCeEEECCCCCcc--------ccceEEEEECC-EEEEEc-CCCCCCCccceEEEEECCCCeEeeCCCCcchh
Confidence 467789999999999988765 112222 1111 233322 11 1 1457899999999999998887653
Q ss_pred CccCCCceEECCeEEEEEecCC--CCeEEEEEECCCceeeee-cCCCCCCCCceeEEEEECCeEEEEEeCCCeE------
Q 047931 188 PLINVPGTLTNGALHWRLQKHG--GDFVLAAFDLVEERFKEF-PLPDASTSFRFFGTGVLGDCLCLQFFKGKMK------ 258 (339)
Q Consensus 188 ~~~~~~~v~~~G~lyw~~~~~~--~~~~il~fD~~~~~~~~i-~lP~~~~~~~~~~l~~~~G~L~~v~~~~~~l------ 258 (339)
.....+.++|++|-+++..+ ....+..||+.+++|+.+ ++|... .....++++|+||++++.....
T Consensus 343 --~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r---~~~~~~~~~g~IYviGG~~~~~~~~~~~ 417 (557)
T PHA02713 343 --CRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIAL---SSYGMCVLDQYIYIIGGRTEHIDYTSVH 417 (557)
T ss_pred --hceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCccc---ccccEEEECCEEEEEeCCCccccccccc
Confidence 33457899999999987642 235799999999999987 555544 3445678899999998722100
Q ss_pred ------------EEEEEcccC-CCCCeEEEEEecCCCCeeEEEEEeCCeEEEEECC-------cEEEEEECCC-CcEEEe
Q 047931 259 ------------EHWIMKEYG-VKESWTRVFIHQDPNNVWPLCLWKNSTKLLVINR-------KNLLVCDCNN-EGSEDV 317 (339)
Q Consensus 259 ------------~iW~l~~~~-~~~~W~~~~~i~~~~~~~~~~~~~~~~i~~~~~~-------~~~~~yd~~t-~~~~~v 317 (339)
..-.++.|+ ...+|..+..++.+. ..+-++.-+|.|++..+. ..+..||+++ ++|+.+
T Consensus 418 ~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r-~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~ 496 (557)
T PHA02713 418 HMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGT-IRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELI 496 (557)
T ss_pred ccccccccccccccceEEEECCCCCeEeecCCCCccc-ccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEc
Confidence 011122233 346899877665432 112223336778887642 1368999999 899988
Q ss_pred E
Q 047931 318 A 318 (339)
Q Consensus 318 ~ 318 (339)
.
T Consensus 497 ~ 497 (557)
T PHA02713 497 T 497 (557)
T ss_pred c
Confidence 4
No 9
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.29 E-value=1.8e-10 Score=109.30 Aligned_cols=193 Identities=17% Similarity=0.138 Sum_probs=133.6
Q ss_pred CEEEEEcccccceeecCCCCCCCCCCCCCCeeEEeeeCCceEEEEEee-E-e-CCCcEEEEEEeCCCceEEecccCCccC
Q 047931 112 KIFFVLNPLTRESKRIPDVPFEPFPRSSDDLYGFGCTAEDCKFIKVSF-G-L-KPNMSVAIFSLRMNSWRRVLASGYTRP 188 (339)
Q Consensus 112 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~~~~~ykvv~~~~-~-~-~~~~~~~vyss~~~~W~~~~~~~~~~~ 188 (339)
..+..+||.+++|..+.+++.+. . ..+.....+ +|..+.- + . .....+++|++.++.|..++.|....
T Consensus 301 ~~ve~yd~~~~~w~~~a~m~~~r---~---~~~~~~~~~--~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R- 371 (571)
T KOG4441|consen 301 RSVECYDPKTNEWSSLAPMPSPR---C---RVGVAVLNG--KLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKR- 371 (571)
T ss_pred ceeEEecCCcCcEeecCCCCccc---c---cccEEEECC--EEEEEccccCCCcccceEEEecCCCCceeccCCccCcc-
Confidence 46778999999999999988661 1 112222112 2332220 1 1 12578999999999999998887653
Q ss_pred ccCCCceEECCeEEEEEecC--CCCeEEEEEECCCceeeee-cCCCCCCCCceeEEEEECCeEEEEEe-CCCeEEEEEEc
Q 047931 189 LINVPGTLTNGALHWRLQKH--GGDFVLAAFDLVEERFKEF-PLPDASTSFRFFGTGVLGDCLCLQFF-KGKMKEHWIMK 264 (339)
Q Consensus 189 ~~~~~~v~~~G~lyw~~~~~--~~~~~il~fD~~~~~~~~i-~lP~~~~~~~~~~l~~~~G~L~~v~~-~~~~l~iW~l~ 264 (339)
.....+.++|.+|.+++.. .....+..||+.+++|... +++... .....++.+|+||++++ ....-.+=..+
T Consensus 372 -~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r---~~~gv~~~~g~iYi~GG~~~~~~~l~sve 447 (571)
T KOG4441|consen 372 -SDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRR---SGHGVAVLGGKLYIIGGGDGSSNCLNSVE 447 (571)
T ss_pred -ccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcce---eeeEEEEECCEEEEEcCcCCCccccceEE
Confidence 3455689999999998876 2346899999999999988 465533 56778899999999999 33221222334
Q ss_pred ccC-CCCCeEEEEEecCCCCeeEEEEEeCCeEEEEECCc------EEEEEECCCCcEEEeE
Q 047931 265 EYG-VKESWTRVFIHQDPNNVWPLCLWKNSTKLLVINRK------NLLVCDCNNEGSEDVA 318 (339)
Q Consensus 265 ~~~-~~~~W~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~------~~~~yd~~t~~~~~v~ 318 (339)
-|+ ...+|..+..|..+-....+++. ++.|+.+.+.. .+-+||+++++|..+.
T Consensus 448 ~YDP~t~~W~~~~~M~~~R~~~g~a~~-~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~ 507 (571)
T KOG4441|consen 448 CYDPETNTWTLIAPMNTRRSGFGVAVL-NGKIYVVGGFDGTSALSSVERYDPETNQWTMVA 507 (571)
T ss_pred EEcCCCCceeecCCcccccccceEEEE-CCEEEEECCccCCCccceEEEEcCCCCceeEcc
Confidence 444 45789998888764322234443 66777776522 3899999999999995
No 10
>PHA03098 kelch-like protein; Provisional
Probab=99.24 E-value=6.4e-10 Score=106.11 Aligned_cols=193 Identities=13% Similarity=0.050 Sum_probs=123.8
Q ss_pred CEEEEEcccccceeecCCCCCCCCCCCCCCeeEEeeeCCceEEEEEeeEeCCCcEEEEEEeCCCceEEecccCCccCccC
Q 047931 112 KIFFVLNPLTRESKRIPDVPFEPFPRSSDDLYGFGCTAEDCKFIKVSFGLKPNMSVAIFSLRMNSWRRVLASGYTRPLIN 191 (339)
Q Consensus 112 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~~~~~ykvv~~~~~~~~~~~~~vyss~~~~W~~~~~~~~~~~~~~ 191 (339)
..++.+||.|++|..+|+++.+ +.......+ .+.--+++..........+++|+..++.|+..+.+|.+. ..
T Consensus 311 ~~v~~yd~~~~~W~~~~~~~~~---R~~~~~~~~---~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r--~~ 382 (534)
T PHA03098 311 NSVVSYDTKTKSWNKVPELIYP---RKNPGVTVF---NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPR--YN 382 (534)
T ss_pred ccEEEEeCCCCeeeECCCCCcc---cccceEEEE---CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCC--cc
Confidence 3688999999999999988754 121111111 121111111101112457899999999999998777653 34
Q ss_pred CCceEECCeEEEEEecC---CCCeEEEEEECCCceeeee-cCCCCCCCCceeEEEEECCeEEEEEeC--CC----eEEEE
Q 047931 192 VPGTLTNGALHWRLQKH---GGDFVLAAFDLVEERFKEF-PLPDASTSFRFFGTGVLGDCLCLQFFK--GK----MKEHW 261 (339)
Q Consensus 192 ~~~v~~~G~lyw~~~~~---~~~~~il~fD~~~~~~~~i-~lP~~~~~~~~~~l~~~~G~L~~v~~~--~~----~l~iW 261 (339)
..++.++|.+|-+++.. .....+..||+.+++|+.+ ++|... .....+..+|+|+++++. .. .-.+|
T Consensus 383 ~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r---~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~ 459 (534)
T PHA03098 383 PCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISH---YGGCAIYHDGKIYVIGGISYIDNIKVYNIVE 459 (534)
T ss_pred ceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccc---cCceEEEECCEEEEECCccCCCCCcccceEE
Confidence 45688999999998743 1235789999999999987 455443 234567789999999872 11 12355
Q ss_pred EEcccCCCCCeEEEEEecCCCCeeEEEEEeCCeEEEEECC------cEEEEEECCCCcEEEeE
Q 047931 262 IMKEYGVKESWTRVFIHQDPNNVWPLCLWKNSTKLLVINR------KNLLVCDCNNEGSEDVA 318 (339)
Q Consensus 262 ~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~i~~~~~~------~~~~~yd~~t~~~~~v~ 318 (339)
..+. ...+|..+..++.+......++ .++.+++..+. ..+..||+++++|+.+.
T Consensus 460 ~yd~--~~~~W~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~ 519 (534)
T PHA03098 460 SYNP--VTNKWTELSSLNFPRINASLCI-FNNKIYVVGGDKYEYYINEIEVYDDKTNTWTLFC 519 (534)
T ss_pred EecC--CCCceeeCCCCCcccccceEEE-ECCEEEEEcCCcCCcccceeEEEeCCCCEEEecC
Confidence 5553 2468998765543321112222 26677776642 25999999999999884
No 11
>PLN02153 epithiospecifier protein
Probab=99.09 E-value=2.7e-08 Score=89.38 Aligned_cols=199 Identities=12% Similarity=0.074 Sum_probs=118.7
Q ss_pred CEEEEEcccccceeecCCCCCCCCCCCCCCeeEEee--eCCceEEEEEee--EeCCCcEEEEEEeCCCceEEecccCC--
Q 047931 112 KIFFVLNPLTRESKRIPDVPFEPFPRSSDDLYGFGC--TAEDCKFIKVSF--GLKPNMSVAIFSLRMNSWRRVLASGY-- 185 (339)
Q Consensus 112 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~--~~~~ykvv~~~~--~~~~~~~~~vyss~~~~W~~~~~~~~-- 185 (339)
+.++++||.+++|..+|+.... |+.. ..+++. ..+ +++.+.- .......+++|+..++.|+.++.++.
T Consensus 50 ~~~~~yd~~~~~W~~~~~~~~~--p~~~--~~~~~~~~~~~--~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~ 123 (341)
T PLN02153 50 KDLYVFDFNTHTWSIAPANGDV--PRIS--CLGVRMVAVGT--KLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEG 123 (341)
T ss_pred CcEEEEECCCCEEEEcCccCCC--CCCc--cCceEEEEECC--EEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCC
Confidence 4789999999999999875432 1111 112221 122 2333220 11113478999999999998865521
Q ss_pred -ccCccCCCceEECCeEEEEEecC-CC-------CeEEEEEECCCceeeeecCCCCC-CCCceeEEEEECCeEEEEEeCC
Q 047931 186 -TRPLINVPGTLTNGALHWRLQKH-GG-------DFVLAAFDLVEERFKEFPLPDAS-TSFRFFGTGVLGDCLCLQFFKG 255 (339)
Q Consensus 186 -~~~~~~~~~v~~~G~lyw~~~~~-~~-------~~~il~fD~~~~~~~~i~lP~~~-~~~~~~~l~~~~G~L~~v~~~~ 255 (339)
........++..+|++|-++... .. ...+.+||+++++|..++.+... .......+++.+|+|+++....
T Consensus 124 ~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~ 203 (341)
T PLN02153 124 GPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFA 203 (341)
T ss_pred CCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcceEEEECCeEEEEeccc
Confidence 11123445678999999987653 10 13588999999999987543211 1112345677899999987511
Q ss_pred ----------C-eEEEEEEcccCCCCCeEEEEEec---CCCCeeEEEEEeCCeEEEEECC---------------cEEEE
Q 047931 256 ----------K-MKEHWIMKEYGVKESWTRVFIHQ---DPNNVWPLCLWKNSTKLLVINR---------------KNLLV 306 (339)
Q Consensus 256 ----------~-~l~iW~l~~~~~~~~W~~~~~i~---~~~~~~~~~~~~~~~i~~~~~~---------------~~~~~ 306 (339)
. .-+++.++- ...+|+++.... .+......++ -++.|++..+. ..++.
T Consensus 204 ~~~~~gG~~~~~~~~v~~yd~--~~~~W~~~~~~g~~P~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~ 280 (341)
T PLN02153 204 TSILPGGKSDYESNAVQFFDP--ASGKWTEVETTGAKPSARSVFAHAV-VGKYIIIFGGEVWPDLKGHLGPGTLSNEGYA 280 (341)
T ss_pred cccccCCccceecCceEEEEc--CCCcEEeccccCCCCCCcceeeeEE-ECCEEEEECcccCCccccccccccccccEEE
Confidence 0 123555543 236799886542 2221222222 34567776552 15899
Q ss_pred EECCCCcEEEeEE
Q 047931 307 CDCNNEGSEDVAV 319 (339)
Q Consensus 307 yd~~t~~~~~v~~ 319 (339)
||+++++|+.+.-
T Consensus 281 ~d~~~~~W~~~~~ 293 (341)
T PLN02153 281 LDTETLVWEKLGE 293 (341)
T ss_pred EEcCccEEEeccC
Confidence 9999999998854
No 12
>PLN02193 nitrile-specifier protein
Probab=99.02 E-value=6.7e-08 Score=90.43 Aligned_cols=200 Identities=11% Similarity=0.044 Sum_probs=121.7
Q ss_pred CEEEEEcccccceeecCCCCCCCCCCCCCCeeEEeeeCCceEEEEEee-E-eCCCcEEEEEEeCCCceEEeccc---CCc
Q 047931 112 KIFFVLNPLTRESKRIPDVPFEPFPRSSDDLYGFGCTAEDCKFIKVSF-G-LKPNMSVAIFSLRMNSWRRVLAS---GYT 186 (339)
Q Consensus 112 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~~~~~ykvv~~~~-~-~~~~~~~~vyss~~~~W~~~~~~---~~~ 186 (339)
..++++||.+.+|..+|+.... |.......+.....+ ++..+.- . ......+++|++.++.|+.++.+ |..
T Consensus 193 ~~v~~yD~~~~~W~~~~~~g~~--P~~~~~~~~~v~~~~--~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~ 268 (470)
T PLN02193 193 KHLYVFDLETRTWSISPATGDV--PHLSCLGVRMVSIGS--TLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTP 268 (470)
T ss_pred CcEEEEECCCCEEEeCCCCCCC--CCCcccceEEEEECC--EEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCC
Confidence 3588999999999988764321 111110111111111 2222220 0 11135789999999999998655 322
Q ss_pred cCccCCCceEECCeEEEEEecC--CCCeEEEEEECCCceeeeecCCCCCC-CCceeEEEEECCeEEEEEe-C-CCeEEEE
Q 047931 187 RPLINVPGTLTNGALHWRLQKH--GGDFVLAAFDLVEERFKEFPLPDAST-SFRFFGTGVLGDCLCLQFF-K-GKMKEHW 261 (339)
Q Consensus 187 ~~~~~~~~v~~~G~lyw~~~~~--~~~~~il~fD~~~~~~~~i~lP~~~~-~~~~~~l~~~~G~L~~v~~-~-~~~l~iW 261 (339)
......+.+++.+|.+.... .....+.+||+.+++|+.++.|.... ......+++.+|+++++.. . ...-++|
T Consensus 269 --R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~~~~dv~ 346 (470)
T PLN02193 269 --RSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGCEVDDVH 346 (470)
T ss_pred --ccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCCCCccCceE
Confidence 23344677899999987654 12346889999999999886543221 1133456778999999887 2 2234567
Q ss_pred EEcccCCCCCeEEEEEec---CCCCeeEEEEEeCCeEEEEECC---------------cEEEEEECCCCcEEEeEEe
Q 047931 262 IMKEYGVKESWTRVFIHQ---DPNNVWPLCLWKNSTKLLVINR---------------KNLLVCDCNNEGSEDVAVA 320 (339)
Q Consensus 262 ~l~~~~~~~~W~~~~~i~---~~~~~~~~~~~~~~~i~~~~~~---------------~~~~~yd~~t~~~~~v~~~ 320 (339)
.++-. ..+|.++..+. .+......++ -++.|++..+. ..++.||++|++|+.+...
T Consensus 347 ~yD~~--t~~W~~~~~~g~~P~~R~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~~~~ 420 (470)
T PLN02193 347 YYDPV--QDKWTQVETFGVRPSERSVFASAA-VGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWERLDKF 420 (470)
T ss_pred EEECC--CCEEEEeccCCCCCCCcceeEEEE-ECCEEEEECCccCCccccccCccceeccEEEEEcCcCEEEEcccC
Confidence 77642 46799886652 2221222233 35567776542 1389999999999998643
No 13
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=98.96 E-value=1.1e-07 Score=85.74 Aligned_cols=196 Identities=17% Similarity=0.133 Sum_probs=117.7
Q ss_pred CEEEEEc--ccccceeecCCCCCCCCCCCCCCeeEEeeeCCceEEEEEee-Ee-C------CCcEEEEEEeCCCceEEec
Q 047931 112 KIFFVLN--PLTRESKRIPDVPFEPFPRSSDDLYGFGCTAEDCKFIKVSF-GL-K------PNMSVAIFSLRMNSWRRVL 181 (339)
Q Consensus 112 ~~~~V~N--P~T~~~~~LP~~~~~~~~~~~~~~~~~g~~~~~ykvv~~~~-~~-~------~~~~~~vyss~~~~W~~~~ 181 (339)
+.+++.+ |.+++|..+|+++.. ++.. .+.....+ +|..+.- .. . ....++.|+..++.|+.++
T Consensus 29 ~~~~~~d~~~~~~~W~~l~~~p~~--~R~~---~~~~~~~~--~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~ 101 (346)
T TIGR03547 29 TSWYKLDLKKPSKGWQKIADFPGG--PRNQ---AVAAAIDG--KLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLD 101 (346)
T ss_pred CeeEEEECCCCCCCceECCCCCCC--Cccc---ceEEEECC--EEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCC
Confidence 4677777 477889999988732 1111 11111112 2222220 00 0 1246899999999999986
Q ss_pred c-cCCccCccCCCce-EECCeEEEEEecCCC------------------------------------CeEEEEEECCCce
Q 047931 182 A-SGYTRPLINVPGT-LTNGALHWRLQKHGG------------------------------------DFVLAAFDLVEER 223 (339)
Q Consensus 182 ~-~~~~~~~~~~~~v-~~~G~lyw~~~~~~~------------------------------------~~~il~fD~~~~~ 223 (339)
. +|.. .....++ .++|.+|.++..... ...+..||+.+++
T Consensus 102 ~~~p~~--~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~ 179 (346)
T TIGR03547 102 TRSPVG--LLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQ 179 (346)
T ss_pred CCCCCc--ccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccceEEEEECCCCc
Confidence 3 2222 2222234 689999998764310 1479999999999
Q ss_pred eeee-cCCCCCCCCceeEEEEECCeEEEEEeC----CCeEEEEEEcccCCCCCeEEEEEecCCC-----C-eeEEEEEeC
Q 047931 224 FKEF-PLPDASTSFRFFGTGVLGDCLCLQFFK----GKMKEHWIMKEYGVKESWTRVFIHQDPN-----N-VWPLCLWKN 292 (339)
Q Consensus 224 ~~~i-~lP~~~~~~~~~~l~~~~G~L~~v~~~----~~~l~iW~l~~~~~~~~W~~~~~i~~~~-----~-~~~~~~~~~ 292 (339)
|+.+ ++|.... ....++..+|+|+++... ....++|..+-.....+|..+..++.+. + ....++..+
T Consensus 180 W~~~~~~p~~~r--~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m~~~r~~~~~~~~~~~a~~~~ 257 (346)
T TIGR03547 180 WRNLGENPFLGT--AGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPLPPPKSSSQEGLAGAFAGISN 257 (346)
T ss_pred eeECccCCCCcC--CCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCCCCCCCCCccccccEEeeeEEC
Confidence 9998 4553221 345677889999999882 1234566554111235799887765421 1 111123346
Q ss_pred CeEEEEECC-----------------------cEEEEEECCCCcEEEeE
Q 047931 293 STKLLVINR-----------------------KNLLVCDCNNEGSEDVA 318 (339)
Q Consensus 293 ~~i~~~~~~-----------------------~~~~~yd~~t~~~~~v~ 318 (339)
|+|++..+. ..+-+||+++++|+.+.
T Consensus 258 ~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~ 306 (346)
T TIGR03547 258 GVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVG 306 (346)
T ss_pred CEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccC
Confidence 778776542 13679999999999884
No 14
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.95 E-value=8.2e-11 Score=72.75 Aligned_cols=42 Identities=26% Similarity=0.521 Sum_probs=36.4
Q ss_pred CCCCcHHHHHHHHccCCcccceeeeeccccccccCCChHHHH
Q 047931 1 MATIPHEIIFEILLRLPVKSLCRFKCVSSSWLALISDPQFVM 42 (339)
Q Consensus 1 ~~~Lp~Dll~eIL~rLP~~~l~r~~~VcK~W~~li~sp~F~~ 42 (339)
+..||+|++.+||+.||++++.++++|||+|++++.++.+-+
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW~ 42 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSLWR 42 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCHHH
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhhhh
Confidence 578999999999999999999999999999999998875544
No 15
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=98.95 E-value=1.9e-07 Score=83.32 Aligned_cols=149 Identities=14% Similarity=0.045 Sum_probs=98.5
Q ss_pred CcEEEEEEeCCCce----EEecccCCccCccCCCceEECCeEEEEEecC--CCCeEEEEEECCCceeeeec-CCCCCCCC
Q 047931 164 NMSVAIFSLRMNSW----RRVLASGYTRPLINVPGTLTNGALHWRLQKH--GGDFVLAAFDLVEERFKEFP-LPDASTSF 236 (339)
Q Consensus 164 ~~~~~vyss~~~~W----~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~--~~~~~il~fD~~~~~~~~i~-lP~~~~~~ 236 (339)
...++.|+..++.| +.++.+|... ....++.++|.+|.+.... .....+.+||+++++|+.++ +|....
T Consensus 87 ~~~v~~~d~~~~~w~~~~~~~~~lp~~~--~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r-- 162 (323)
T TIGR03548 87 FSSVYRITLDESKEELICETIGNLPFTF--ENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPR-- 162 (323)
T ss_pred ceeEEEEEEcCCceeeeeeEcCCCCcCc--cCceEEEECCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCC--
Confidence 45788999999887 5666666553 2345688999999998753 22357899999999999984 664322
Q ss_pred ceeEEEEECCeEEEEEeC--CCeEEEEEEcccCCCCCeEEEEEecC---CCC--eeEEEEEeCCeEEEEECC--------
Q 047931 237 RFFGTGVLGDCLCLQFFK--GKMKEHWIMKEYGVKESWTRVFIHQD---PNN--VWPLCLWKNSTKLLVINR-------- 301 (339)
Q Consensus 237 ~~~~l~~~~G~L~~v~~~--~~~l~iW~l~~~~~~~~W~~~~~i~~---~~~--~~~~~~~~~~~i~~~~~~-------- 301 (339)
....++..+|+|+++... ....++|..+- ...+|..+..+.. +.. ....++..++.|++..+.
T Consensus 163 ~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~--~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~ 240 (323)
T TIGR03548 163 VQPVCVKLQNELYVFGGGSNIAYTDGYKYSP--KKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFNKDVYNDA 240 (323)
T ss_pred CcceEEEECCEEEEEcCCCCccccceEEEec--CCCeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcCHHHHHHH
Confidence 234557789999999882 22345565543 2367988755421 110 111122234567665432
Q ss_pred ------------------------------cEEEEEECCCCcEEEeE
Q 047931 302 ------------------------------KNLLVCDCNNEGSEDVA 318 (339)
Q Consensus 302 ------------------------------~~~~~yd~~t~~~~~v~ 318 (339)
..+..||+++++|+.+.
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~ 287 (323)
T TIGR03548 241 VIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIG 287 (323)
T ss_pred HhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEcc
Confidence 24999999999999885
No 16
>PHA03098 kelch-like protein; Provisional
Probab=98.86 E-value=9.4e-08 Score=91.30 Aligned_cols=189 Identities=11% Similarity=0.021 Sum_probs=118.5
Q ss_pred EEEEEcccccceeecCCCCCCCCCCCCCCeeEEeeeCCceEEEEEe-eEeC--CCcEEEEEEeCCCceEEecccCCccCc
Q 047931 113 IFFVLNPLTRESKRIPDVPFEPFPRSSDDLYGFGCTAEDCKFIKVS-FGLK--PNMSVAIFSLRMNSWRRVLASGYTRPL 189 (339)
Q Consensus 113 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~~~~~ykvv~~~-~~~~--~~~~~~vyss~~~~W~~~~~~~~~~~~ 189 (339)
.+.-+|+.+++|..++..+.. .. .+.....+ +++.+. .... ....+..|+..++.|..++.++...
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~----~~---~~~~~~~~--~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R-- 333 (534)
T PHA03098 265 NYITNYSPLSEINTIIDIHYV----YC---FGSVVLNN--VIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPR-- 333 (534)
T ss_pred eeeecchhhhhcccccCcccc----cc---ceEEEECC--EEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCccc--
Confidence 344568889999888765533 11 11111112 222222 0111 1246889999999999988777543
Q ss_pred cCCCceEECCeEEEEEecC--CCCeEEEEEECCCceeeee-cCCCCCCCCceeEEEEECCeEEEEEe-C-CC--eEEEEE
Q 047931 190 INVPGTLTNGALHWRLQKH--GGDFVLAAFDLVEERFKEF-PLPDASTSFRFFGTGVLGDCLCLQFF-K-GK--MKEHWI 262 (339)
Q Consensus 190 ~~~~~v~~~G~lyw~~~~~--~~~~~il~fD~~~~~~~~i-~lP~~~~~~~~~~l~~~~G~L~~v~~-~-~~--~l~iW~ 262 (339)
.....+.++|.+|-+++.. .....+..||+.+++|+.+ ++|... .....+..+|+++++++ . .. .-.++.
T Consensus 334 ~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r---~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~ 410 (534)
T PHA03098 334 KNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPR---YNPCVVNVNNLIYVIGGISKNDELLKTVEC 410 (534)
T ss_pred ccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCC---ccceEEEECCEEEEECCcCCCCcccceEEE
Confidence 3445788999999998764 1235688999999999987 455443 34556788999999988 2 11 123444
Q ss_pred EcccCCCCCeEEEEEecCCCCeeEEEEEeCCeEEEEECC---------cEEEEEECCCCcEEEeE
Q 047931 263 MKEYGVKESWTRVFIHQDPNNVWPLCLWKNSTKLLVINR---------KNLLVCDCNNEGSEDVA 318 (339)
Q Consensus 263 l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~i~~~~~~---------~~~~~yd~~t~~~~~v~ 318 (339)
.+- .+.+|.....++.+..... ++..++.|++..+. ..+..||+++++|+.+.
T Consensus 411 yd~--~t~~W~~~~~~p~~r~~~~-~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~ 472 (534)
T PHA03098 411 FSL--NTNKWSKGSPLPISHYGGC-AIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELS 472 (534)
T ss_pred EeC--CCCeeeecCCCCccccCce-EEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCC
Confidence 442 2367998765554321122 23335677776542 13899999999999884
No 17
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=98.84 E-value=6.1e-07 Score=81.71 Aligned_cols=198 Identities=13% Similarity=0.024 Sum_probs=117.4
Q ss_pred CEEEEEccc--ccceeecCCCCCCCCCCCCCCeeEEeeeCCceEEEEEeeE-eC-----CCcEEEEEEeCCCceEEeccc
Q 047931 112 KIFFVLNPL--TRESKRIPDVPFEPFPRSSDDLYGFGCTAEDCKFIKVSFG-LK-----PNMSVAIFSLRMNSWRRVLAS 183 (339)
Q Consensus 112 ~~~~V~NP~--T~~~~~LP~~~~~~~~~~~~~~~~~g~~~~~ykvv~~~~~-~~-----~~~~~~vyss~~~~W~~~~~~ 183 (339)
..+++.++- +++|..+|+++.. ++... +.....+..-|+.-... .. ....++.|+..++.|+.++.+
T Consensus 50 ~~~~~~d~~~~~~~W~~l~~~p~~--~r~~~---~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~ 124 (376)
T PRK14131 50 TSWYKLDLNAPSKGWTKIAAFPGG--PREQA---VAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTR 124 (376)
T ss_pred CeEEEEECCCCCCCeEECCcCCCC--Ccccc---eEEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCC
Confidence 456777664 5789999887642 11111 11111122222211100 00 024689999999999998642
Q ss_pred -CCccCccCCCceE-ECCeEEEEEecCC------------------------------------CCeEEEEEECCCceee
Q 047931 184 -GYTRPLINVPGTL-TNGALHWRLQKHG------------------------------------GDFVLAAFDLVEERFK 225 (339)
Q Consensus 184 -~~~~~~~~~~~v~-~~G~lyw~~~~~~------------------------------------~~~~il~fD~~~~~~~ 225 (339)
|.. .....++. .+|.+|.++.... ....+..||+.+++|+
T Consensus 125 ~p~~--~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~ 202 (376)
T PRK14131 125 SPVG--LAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPSTNQWK 202 (376)
T ss_pred CCCc--ccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCceEEEEECCCCeee
Confidence 332 22223344 7999999976431 0146999999999999
Q ss_pred ee-cCCCCCCCCceeEEEEECCeEEEEEeC----CCeEEEEEEcccCCCCCeEEEEEecCCC-C------eeEEEEEeCC
Q 047931 226 EF-PLPDASTSFRFFGTGVLGDCLCLQFFK----GKMKEHWIMKEYGVKESWTRVFIHQDPN-N------VWPLCLWKNS 293 (339)
Q Consensus 226 ~i-~lP~~~~~~~~~~l~~~~G~L~~v~~~----~~~l~iW~l~~~~~~~~W~~~~~i~~~~-~------~~~~~~~~~~ 293 (339)
.+ ++|.... ....++..+++|+++... ....++|..+-.....+|.++..++.+. + ....++..++
T Consensus 203 ~~~~~p~~~~--~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~a~~~~~ 280 (376)
T PRK14131 203 NAGESPFLGT--AGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPDLPPAPGGSSQEGVAGAFAGYSNG 280 (376)
T ss_pred ECCcCCCCCC--CcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecCCCCCCCcCCcCCccceEeceeECC
Confidence 88 4554221 234567789999999971 2345677655212346799887775421 1 1122333466
Q ss_pred eEEEEECCc-----------------------EEEEEECCCCcEEEeE
Q 047931 294 TKLLVINRK-----------------------NLLVCDCNNEGSEDVA 318 (339)
Q Consensus 294 ~i~~~~~~~-----------------------~~~~yd~~t~~~~~v~ 318 (339)
.|++..+.. .+-.||+++++|+.+.
T Consensus 281 ~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~ 328 (376)
T PRK14131 281 VLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVG 328 (376)
T ss_pred EEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccC
Confidence 777765421 2457999999999874
No 18
>PHA02790 Kelch-like protein; Provisional
Probab=98.82 E-value=1.3e-07 Score=88.74 Aligned_cols=142 Identities=10% Similarity=0.002 Sum_probs=100.7
Q ss_pred CcEEEEEEeCCCceEEecccCCccCccCCCceEECCeEEEEEecCCCCeEEEEEECCCceeeee-cCCCCCCCCceeEEE
Q 047931 164 NMSVAIFSLRMNSWRRVLASGYTRPLINVPGTLTNGALHWRLQKHGGDFVLAAFDLVEERFKEF-PLPDASTSFRFFGTG 242 (339)
Q Consensus 164 ~~~~~vyss~~~~W~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~il~fD~~~~~~~~i-~lP~~~~~~~~~~l~ 242 (339)
...++.|+..++.|..++.++... ....++.++|.+|-+++.. ....+..||+.+++|..+ ++|... .....+
T Consensus 286 ~~~v~~Ydp~~~~W~~~~~m~~~r--~~~~~v~~~~~iYviGG~~-~~~sve~ydp~~n~W~~~~~l~~~r---~~~~~~ 359 (480)
T PHA02790 286 HNNAIAVNYISNNWIPIPPMNSPR--LYASGVPANNKLYVVGGLP-NPTSVERWFHGDAAWVNMPSLLKPR---CNPAVA 359 (480)
T ss_pred CCeEEEEECCCCEEEECCCCCchh--hcceEEEECCEEEEECCcC-CCCceEEEECCCCeEEECCCCCCCC---cccEEE
Confidence 456889999999999998887653 2345688999999998764 224688999999999987 555443 345678
Q ss_pred EECCeEEEEEe-C--CCeEEEEEEcccCCCCCeEEEEEecCCCCeeEEEEEeCCeEEEEECCcEEEEEECCCCcEEEeE
Q 047931 243 VLGDCLCLQFF-K--GKMKEHWIMKEYGVKESWTRVFIHQDPNNVWPLCLWKNSTKLLVINRKNLLVCDCNNEGSEDVA 318 (339)
Q Consensus 243 ~~~G~L~~v~~-~--~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~yd~~t~~~~~v~ 318 (339)
+++|+||++++ . ...++.+..+ ..+|.....++.+. ....++.-+|.|++..+ ...+||+++++|+.+.
T Consensus 360 ~~~g~IYviGG~~~~~~~ve~ydp~----~~~W~~~~~m~~~r-~~~~~~~~~~~IYv~GG--~~e~ydp~~~~W~~~~ 431 (480)
T PHA02790 360 SINNVIYVIGGHSETDTTTEYLLPN----HDQWQFGPSTYYPH-YKSCALVFGRRLFLVGR--NAEFYCESSNTWTLID 431 (480)
T ss_pred EECCEEEEecCcCCCCccEEEEeCC----CCEEEeCCCCCCcc-ccceEEEECCEEEEECC--ceEEecCCCCcEeEcC
Confidence 89999999988 2 2334444333 36799876655433 12223334677777664 3678999999999884
No 19
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.80 E-value=3.4e-10 Score=70.45 Aligned_cols=44 Identities=34% Similarity=0.554 Sum_probs=37.3
Q ss_pred CCCcHHHHHHHHccCCcccceeeeeccccccccCCChHHHHHHh
Q 047931 2 ATIPHEIIFEILLRLPVKSLCRFKCVSSSWLALISDPQFVMLQL 45 (339)
Q Consensus 2 ~~Lp~Dll~eIL~rLP~~~l~r~~~VcK~W~~li~sp~F~~~~~ 45 (339)
.+||+|++.+||.+||++++.+++.|||+|++++.++.+...+.
T Consensus 4 ~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~~~~ 47 (48)
T PF00646_consen 4 SDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWKKII 47 (48)
T ss_dssp HHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHHHHH
T ss_pred HHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccHHHh
Confidence 46999999999999999999999999999999999998876543
No 20
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.70 E-value=1.5e-09 Score=65.00 Aligned_cols=39 Identities=44% Similarity=0.728 Sum_probs=36.7
Q ss_pred CcHHHHHHHHccCCcccceeeeeccccccccCCChHHHH
Q 047931 4 IPHEIIFEILLRLPVKSLCRFKCVSSSWLALISDPQFVM 42 (339)
Q Consensus 4 Lp~Dll~eIL~rLP~~~l~r~~~VcK~W~~li~sp~F~~ 42 (339)
||+|++.+||.+|+++++.++++|||+|+.++.++.|.+
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~~ 39 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFWF 39 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhhh
Confidence 799999999999999999999999999999999988754
No 21
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=98.66 E-value=3.9e-06 Score=76.43 Aligned_cols=150 Identities=14% Similarity=0.110 Sum_probs=94.3
Q ss_pred cEEEEEEeCCCceEEecccCCccCccCCCceEECCeEEEEEecC--C---CCeEEEEEECCCceeeee-cCCCCCCC---
Q 047931 165 MSVAIFSLRMNSWRRVLASGYTRPLINVPGTLTNGALHWRLQKH--G---GDFVLAAFDLVEERFKEF-PLPDASTS--- 235 (339)
Q Consensus 165 ~~~~vyss~~~~W~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~--~---~~~~il~fD~~~~~~~~i-~lP~~~~~--- 235 (339)
..+++|+..++.|+.++.+|... ......+.+++.+|.++... + .......+|+++.+|..+ ++|.....
T Consensus 189 ~~v~~YD~~t~~W~~~~~~p~~~-~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~ 267 (376)
T PRK14131 189 KEVLSYDPSTNQWKNAGESPFLG-TAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPDLPPAPGGSSQ 267 (376)
T ss_pred ceEEEEECCCCeeeECCcCCCCC-CCcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecCCCCCCCcCCcC
Confidence 47999999999999988777522 22344577899999998753 1 123455678899999987 46553311
Q ss_pred -C-ceeEEEEECCeEEEEEeCCC----------e-------EEEEEEcccC-CCCCeEEEEEecCCCCeeEEEEEeCCeE
Q 047931 236 -F-RFFGTGVLGDCLCLQFFKGK----------M-------KEHWIMKEYG-VKESWTRVFIHQDPNNVWPLCLWKNSTK 295 (339)
Q Consensus 236 -~-~~~~l~~~~G~L~~v~~~~~----------~-------l~iW~l~~~~-~~~~W~~~~~i~~~~~~~~~~~~~~~~i 295 (339)
. .....++.+|+|+++..... . -.+|..+-|+ ...+|+....++.+... ..++.-+++|
T Consensus 268 ~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~r~~-~~av~~~~~i 346 (376)
T PRK14131 268 EGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGELPQGLAY-GVSVSWNNGV 346 (376)
T ss_pred CccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccCcCCCCccc-eEEEEeCCEE
Confidence 0 12234678999999987210 0 0123333222 23679987766654422 2344456778
Q ss_pred EEEECCc-------EEEEEECCCCcEEE
Q 047931 296 LLVINRK-------NLLVCDCNNEGSED 316 (339)
Q Consensus 296 ~~~~~~~-------~~~~yd~~t~~~~~ 316 (339)
++..+.. .+..|+++++++..
T Consensus 347 yv~GG~~~~~~~~~~v~~~~~~~~~~~~ 374 (376)
T PRK14131 347 LLIGGETAGGKAVSDVTLLSWDGKKLTV 374 (376)
T ss_pred EEEcCCCCCCcEeeeEEEEEEcCCEEEE
Confidence 8876521 48888888877654
No 22
>PLN02193 nitrile-specifier protein
Probab=98.65 E-value=4.5e-06 Score=78.22 Aligned_cols=196 Identities=12% Similarity=0.054 Sum_probs=113.5
Q ss_pred EEEEEcccc----cceeecCCCCCCCCCCCCCCeeEEeeeCCceEEEEEeeEe-CC---CcEEEEEEeCCCceEEecc--
Q 047931 113 IFFVLNPLT----RESKRIPDVPFEPFPRSSDDLYGFGCTAEDCKFIKVSFGL-KP---NMSVAIFSLRMNSWRRVLA-- 182 (339)
Q Consensus 113 ~~~V~NP~T----~~~~~LP~~~~~~~~~~~~~~~~~g~~~~~ykvv~~~~~~-~~---~~~~~vyss~~~~W~~~~~-- 182 (339)
..++++|.+ .+|..+++......++.......+ .+ +++.+.-.. .. ...+++|+.++++|..++.
T Consensus 138 g~y~~~~~~~~~~~~W~~~~~~~~~P~pR~~h~~~~~---~~--~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g 212 (470)
T PLN02193 138 GAYISLPSTPKLLGKWIKVEQKGEGPGLRCSHGIAQV---GN--KIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATG 212 (470)
T ss_pred EEEEecCCChhhhceEEEcccCCCCCCCccccEEEEE---CC--EEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCC
Confidence 467778866 789988764321012222111111 11 232222011 11 2358999999999998643
Q ss_pred -cCCccCccCCCceEECCeEEEEEecC--CCCeEEEEEECCCceeeeec-C---CCCCCCCceeEEEEECCeEEEEEeC-
Q 047931 183 -SGYTRPLINVPGTLTNGALHWRLQKH--GGDFVLAAFDLVEERFKEFP-L---PDASTSFRFFGTGVLGDCLCLQFFK- 254 (339)
Q Consensus 183 -~~~~~~~~~~~~v~~~G~lyw~~~~~--~~~~~il~fD~~~~~~~~i~-l---P~~~~~~~~~~l~~~~G~L~~v~~~- 254 (339)
+|.. .......+.+++.+|-+.... .....+.+||+.+++|+.+. + |... ....++..+++|+++...
T Consensus 213 ~~P~~-~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R---~~h~~~~~~~~iYv~GG~~ 288 (470)
T PLN02193 213 DVPHL-SCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPR---SFHSMAADEENVYVFGGVS 288 (470)
T ss_pred CCCCC-cccceEEEEECCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCc---cceEEEEECCEEEEECCCC
Confidence 2221 112334678999999987654 12346889999999999873 3 2222 344567789999999872
Q ss_pred --CCeEEEEEEcccCCCCCeEEEEEec---CCCCeeEEEEEeCCeEEEEECC-----cEEEEEECCCCcEEEeEEe
Q 047931 255 --GKMKEHWIMKEYGVKESWTRVFIHQ---DPNNVWPLCLWKNSTKLLVINR-----KNLLVCDCNNEGSEDVAVA 320 (339)
Q Consensus 255 --~~~l~iW~l~~~~~~~~W~~~~~i~---~~~~~~~~~~~~~~~i~~~~~~-----~~~~~yd~~t~~~~~v~~~ 320 (339)
...-++|.++- ...+|..+.... .......+++. ++++++..+. ..+..||+++++|+.+.-.
T Consensus 289 ~~~~~~~~~~yd~--~t~~W~~~~~~~~~~~~R~~~~~~~~-~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~ 361 (470)
T PLN02193 289 ATARLKTLDSYNI--VDKKWFHCSTPGDSFSIRGGAGLEVV-QGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETF 361 (470)
T ss_pred CCCCcceEEEEEC--CCCEEEeCCCCCCCCCCCCCcEEEEE-CCcEEEEECCCCCccCceEEEECCCCEEEEeccC
Confidence 12224455542 236798764321 11112233333 5667766541 3499999999999998543
No 23
>PLN02153 epithiospecifier protein
Probab=98.64 E-value=4e-06 Score=75.38 Aligned_cols=150 Identities=11% Similarity=0.098 Sum_probs=95.0
Q ss_pred cEEEEEEeCCCceEEecccCC-cc-CccCCCceEECCeEEEEEecC--CCCeEEEEEECCCceeeeec-C-----CCCCC
Q 047931 165 MSVAIFSLRMNSWRRVLASGY-TR-PLINVPGTLTNGALHWRLQKH--GGDFVLAAFDLVEERFKEFP-L-----PDAST 234 (339)
Q Consensus 165 ~~~~vyss~~~~W~~~~~~~~-~~-~~~~~~~v~~~G~lyw~~~~~--~~~~~il~fD~~~~~~~~i~-l-----P~~~~ 234 (339)
..+++|+..++.|+.++.++. .. .......+.+++.+|-++... .....+.+||+++++|..++ + |...
T Consensus 50 ~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R- 128 (341)
T PLN02153 50 KDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEAR- 128 (341)
T ss_pred CcEEEEECCCCEEEEcCccCCCCCCccCceEEEEECCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCc-
Confidence 468999999999998764431 11 111234678999999998754 12246889999999999874 3 2222
Q ss_pred CCceeEEEEECCeEEEEEe-CC-C------e-EEEEEEcccCCCCCeEEEEEecC---CCCeeEEEEEeCCeEEEEEC--
Q 047931 235 SFRFFGTGVLGDCLCLQFF-KG-K------M-KEHWIMKEYGVKESWTRVFIHQD---PNNVWPLCLWKNSTKLLVIN-- 300 (339)
Q Consensus 235 ~~~~~~l~~~~G~L~~v~~-~~-~------~-l~iW~l~~~~~~~~W~~~~~i~~---~~~~~~~~~~~~~~i~~~~~-- 300 (339)
.....++.+++|+++.. .. . . -++|.++- ...+|..+..... +.+...+++ -+++|+++.+
T Consensus 129 --~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~--~~~~W~~l~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~ 203 (341)
T PLN02153 129 --TFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNI--ADGKWVQLPDPGENFEKRGGAGFAV-VQGKIWVVYGFA 203 (341)
T ss_pred --eeeEEEEECCEEEEECCccCCCccCCCcccceEEEEEC--CCCeEeeCCCCCCCCCCCCcceEEE-ECCeEEEEeccc
Confidence 34566788999999988 21 1 1 24555543 2367997654421 111122233 3556666432
Q ss_pred ------------CcEEEEEECCCCcEEEeEEe
Q 047931 301 ------------RKNLLVCDCNNEGSEDVAVA 320 (339)
Q Consensus 301 ------------~~~~~~yd~~t~~~~~v~~~ 320 (339)
...+..||+++++|+++...
T Consensus 204 ~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~ 235 (341)
T PLN02153 204 TSILPGGKSDYESNAVQFFDPASGKWTEVETT 235 (341)
T ss_pred cccccCCccceecCceEEEEcCCCcEEecccc
Confidence 12489999999999998643
No 24
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=98.61 E-value=5.9e-06 Score=74.45 Aligned_cols=130 Identities=14% Similarity=0.112 Sum_probs=82.4
Q ss_pred cEEEEEEeCCCceEEecccCCccCccCCCceEECCeEEEEEecC--C-CCeEEE--EEECCCceeeee-cCCCCCC---C
Q 047931 165 MSVAIFSLRMNSWRRVLASGYTRPLINVPGTLTNGALHWRLQKH--G-GDFVLA--AFDLVEERFKEF-PLPDAST---S 235 (339)
Q Consensus 165 ~~~~vyss~~~~W~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~--~-~~~~il--~fD~~~~~~~~i-~lP~~~~---~ 235 (339)
..+++|+..+++|+.++.+|... ......+.++|++|.+.... + ....+. .+|+++++|..+ ++|.... .
T Consensus 168 ~~v~~YDp~t~~W~~~~~~p~~~-r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m~~~r~~~~~ 246 (346)
T TIGR03547 168 KNVLSYDPSTNQWRNLGENPFLG-TAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPLPPPKSSSQE 246 (346)
T ss_pred ceEEEEECCCCceeECccCCCCc-CCCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCCCCCCCCCccc
Confidence 57999999999999998777421 22344578899999998754 1 112333 445577799887 5554321 1
Q ss_pred C-ceeEEEEECCeEEEEEeCC----------------------CeEEEEEEcccCCCCCeEEEEEecCCCCeeEEEEEeC
Q 047931 236 F-RFFGTGVLGDCLCLQFFKG----------------------KMKEHWIMKEYGVKESWTRVFIHQDPNNVWPLCLWKN 292 (339)
Q Consensus 236 ~-~~~~l~~~~G~L~~v~~~~----------------------~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~ 292 (339)
. .....++.+|+|+++.... ..+++|..+. .+|+.+..++.+.. ...++..+
T Consensus 247 ~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~----~~W~~~~~lp~~~~-~~~~~~~~ 321 (346)
T TIGR03547 247 GLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDN----GKWSKVGKLPQGLA-YGVSVSWN 321 (346)
T ss_pred cccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecC----CcccccCCCCCCce-eeEEEEcC
Confidence 0 2334567899999998721 1345565543 57998877765432 22233446
Q ss_pred CeEEEEEC
Q 047931 293 STKLLVIN 300 (339)
Q Consensus 293 ~~i~~~~~ 300 (339)
+.|+++.+
T Consensus 322 ~~iyv~GG 329 (346)
T TIGR03547 322 NGVLLIGG 329 (346)
T ss_pred CEEEEEec
Confidence 67877765
No 25
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=98.43 E-value=2e-05 Score=70.30 Aligned_cols=133 Identities=8% Similarity=-0.053 Sum_probs=80.8
Q ss_pred CEEEEEcccccce----eecCCCCCCCCCCCCCCeeEEeeeCCceEEEEEee--EeCCCcEEEEEEeCCCceEEecccCC
Q 047931 112 KIFFVLNPLTRES----KRIPDVPFEPFPRSSDDLYGFGCTAEDCKFIKVSF--GLKPNMSVAIFSLRMNSWRRVLASGY 185 (339)
Q Consensus 112 ~~~~V~NP~T~~~----~~LP~~~~~~~~~~~~~~~~~g~~~~~ykvv~~~~--~~~~~~~~~vyss~~~~W~~~~~~~~ 185 (339)
+.++.+|+.+++| ..+|++|.. .... +.....+ +|..+.- .......+++|+..++.|..++.+|.
T Consensus 88 ~~v~~~d~~~~~w~~~~~~~~~lp~~----~~~~--~~~~~~~--~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~ 159 (323)
T TIGR03548 88 SSVYRITLDESKEELICETIGNLPFT----FENG--SACYKDG--TLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPG 159 (323)
T ss_pred eeEEEEEEcCCceeeeeeEcCCCCcC----ccCc--eEEEECC--EEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCC
Confidence 4688889999887 677777654 1111 1111112 2222220 11124579999999999999987664
Q ss_pred ccCccCCCceEECCeEEEEEecC-CCCeEEEEEECCCceeeeecC-CCC---CCCCceeEEEEECCeEEEEEe
Q 047931 186 TRPLINVPGTLTNGALHWRLQKH-GGDFVLAAFDLVEERFKEFPL-PDA---STSFRFFGTGVLGDCLCLQFF 253 (339)
Q Consensus 186 ~~~~~~~~~v~~~G~lyw~~~~~-~~~~~il~fD~~~~~~~~i~l-P~~---~~~~~~~~l~~~~G~L~~v~~ 253 (339)
.. ......+.++|.+|-++... .....+.+||+++++|+.++- +.. ........++..+|+|+++..
T Consensus 160 ~~-r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG 231 (323)
T TIGR03548 160 EP-RVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGG 231 (323)
T ss_pred CC-CCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEECC
Confidence 22 22334568999999998654 112346899999999998842 211 100012234455899999887
No 26
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=98.02 E-value=0.00021 Score=63.01 Aligned_cols=207 Identities=15% Similarity=0.118 Sum_probs=123.9
Q ss_pred CCEEEEEcccccceeecCCCCCCCCCCCCCCeeEEeeeCCceEEEEEeeEe--------CCCcEEEEEEeCCCceEEecc
Q 047931 111 PKIFFVLNPLTRESKRIPDVPFEPFPRSSDDLYGFGCTAEDCKFIKVSFGL--------KPNMSVAIFSLRMNSWRRVLA 182 (339)
Q Consensus 111 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~~~~~ykvv~~~~~~--------~~~~~~~vyss~~~~W~~~~~ 182 (339)
.+.+|++|--+.+|+.+-.+..+ +|+-...++ ...++ +-.+... ++ .+-...++|+..+..|..+..
T Consensus 97 YndLy~Yn~k~~eWkk~~spn~P-~pRsshq~v--a~~s~-~l~~fGG-EfaSPnq~qF~HYkD~W~fd~~trkweql~~ 171 (521)
T KOG1230|consen 97 YNDLYSYNTKKNEWKKVVSPNAP-PPRSSHQAV--AVPSN-ILWLFGG-EFASPNQEQFHHYKDLWLFDLKTRKWEQLEF 171 (521)
T ss_pred eeeeeEEeccccceeEeccCCCc-CCCccceeE--EeccC-eEEEecc-ccCCcchhhhhhhhheeeeeeccchheeecc
Confidence 35799999999999988555444 222211111 11122 1111111 11 124578999999999999853
Q ss_pred cCCccCccCCCceEECCeEEEEEecC-CC-----CeEEEEEECCCceeeeecCCCCCCC-CceeEEEEE-CCeEEEEEeC
Q 047931 183 SGYTRPLINVPGTLTNGALHWRLQKH-GG-----DFVLAAFDLVEERFKEFPLPDASTS-FRFFGTGVL-GDCLCLQFFK 254 (339)
Q Consensus 183 ~~~~~~~~~~~~v~~~G~lyw~~~~~-~~-----~~~il~fD~~~~~~~~i~lP~~~~~-~~~~~l~~~-~G~L~~v~~~ 254 (339)
..-+....+...|.....+.-++.-+ .. -.-+.+||+.+=+|+.+..+..... ....++.+. +|.+++....
T Consensus 172 ~g~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsga~PtpRSGcq~~vtpqg~i~vyGGY 251 (521)
T KOG1230|consen 172 GGGPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGAGPTPRSGCQFSVTPQGGIVVYGGY 251 (521)
T ss_pred CCCCCCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCCCCCCCCCCcceEEecCCCcEEEEcch
Confidence 32222233444566665555555443 11 2358999999999999965442211 134566677 9999988871
Q ss_pred ------------CCeEEEEEEcccC---CCCCeEEEEEecC---CCCeeEEEEEeCCeEEEEE---C----C--------
Q 047931 255 ------------GKMKEHWIMKEYG---VKESWTRVFIHQD---PNNVWPLCLWKNSTKLLVI---N----R-------- 301 (339)
Q Consensus 255 ------------~~~l~iW~l~~~~---~~~~W~~~~~i~~---~~~~~~~~~~~~~~i~~~~---~----~-------- 301 (339)
...-++|.|+... .+-.|.++..+.. +-.-.-++++++++-++.. + +
T Consensus 252 sK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsgfsv~va~n~kal~FGGV~D~eeeeEsl~g~F~ 331 (521)
T KOG1230|consen 252 SKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSGFSVAVAKNHKALFFGGVCDLEEEEESLSGEFF 331 (521)
T ss_pred hHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCceeEEEecCCceEEecceecccccchhhhhhhh
Confidence 2456899998432 2346777766543 2223456677776544433 2 0
Q ss_pred cEEEEEECCCCcEEEeEEeCC
Q 047931 302 KNLLVCDCNNEGSEDVAVADV 322 (339)
Q Consensus 302 ~~~~~yd~~t~~~~~v~~~~~ 322 (339)
..|+.||+..++|..-.+++.
T Consensus 332 NDLy~fdlt~nrW~~~qlq~~ 352 (521)
T KOG1230|consen 332 NDLYFFDLTRNRWSEGQLQGK 352 (521)
T ss_pred hhhhheecccchhhHhhhccC
Confidence 139999999999998877754
No 27
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=97.97 E-value=0.00053 Score=57.12 Aligned_cols=215 Identities=13% Similarity=0.043 Sum_probs=122.1
Q ss_pred eeCceEEEccCCCEEEEEcccccceeecCCCCCCC-CCC-CC---CCeeEEeeeCCceEEEEEeeEeCC----CcEEEEE
Q 047931 100 SCNGLVCTTPKPKIFFVLNPLTRESKRIPDVPFEP-FPR-SS---DDLYGFGCTAEDCKFIKVSFGLKP----NMSVAIF 170 (339)
Q Consensus 100 s~~GLl~~~~~~~~~~V~NP~T~~~~~LP~~~~~~-~~~-~~---~~~~~~g~~~~~ykvv~~~~~~~~----~~~~~vy 170 (339)
.|.|-.-=...+-.+-|.|..+-+|.++|+--... ++. +. ...+|-....-+=|+.... ...+ ...+..|
T Consensus 32 YCsGedy~~~~piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~d~~yvWG-GRND~egaCN~Ly~f 110 (392)
T KOG4693|consen 32 YCSGEDYDAKDPIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQDKAYVWG-GRNDDEGACNLLYEF 110 (392)
T ss_pred cccccccccCCcceeEEeeccceeEEecCcccccccccCCCCccchhhcCceEEEEcceEEEEc-CccCcccccceeeee
Confidence 34444322223447889999999999999832221 000 00 0011111100000111111 1111 4567789
Q ss_pred EeCCCceEEec---ccCCccCccCCCceEECCeEEEEEecC-C---CCeEEEEEECCCceeeeec---CCCCCCCCceeE
Q 047931 171 SLRMNSWRRVL---ASGYTRPLINVPGTLTNGALHWRLQKH-G---GDFVLAAFDLVEERFKEFP---LPDASTSFRFFG 240 (339)
Q Consensus 171 ss~~~~W~~~~---~~~~~~~~~~~~~v~~~G~lyw~~~~~-~---~~~~il~fD~~~~~~~~i~---lP~~~~~~~~~~ 240 (339)
+.+++.|++.+ .+|.. ....++++++..+|-+.... + ..--+.++|+.|.+|+.+. .|+...+ ...
T Consensus 111 Dp~t~~W~~p~v~G~vPga--RDGHsAcV~gn~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~~~Tkg~PprwRD--FH~ 186 (392)
T KOG4693|consen 111 DPETNVWKKPEVEGFVPGA--RDGHSACVWGNQMYIFGGYEEDAQRFSQDTHVLDFATMTWREMHTKGDPPRWRD--FHT 186 (392)
T ss_pred ccccccccccceeeecCCc--cCCceeeEECcEEEEecChHHHHHhhhccceeEeccceeeeehhccCCCchhhh--hhh
Confidence 99999998763 34433 23456788888999887654 1 1346889999999999983 5555543 223
Q ss_pred EEEECCeEEEEEe--C------------CCeEEEEEEcccCCCCCeEEEEEecC-CCCee-EEEEEeCCeEEEEECC---
Q 047931 241 TGVLGDCLCLQFF--K------------GKMKEHWIMKEYGVKESWTRVFIHQD-PNNVW-PLCLWKNSTKLLVINR--- 301 (339)
Q Consensus 241 l~~~~G~L~~v~~--~------------~~~l~iW~l~~~~~~~~W~~~~~i~~-~~~~~-~~~~~~~~~i~~~~~~--- 301 (339)
-.+.+|..++... + ..+|..-.+. .+.|..-..-.. +-|.+ -..+.-||++++..+.
T Consensus 187 a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~----T~aW~r~p~~~~~P~GRRSHS~fvYng~~Y~FGGYng~ 262 (392)
T KOG4693|consen 187 ASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLA----TGAWTRTPENTMKPGGRRSHSTFVYNGKMYMFGGYNGT 262 (392)
T ss_pred hhhccceEEEeccccccCCCccchhhhhcceeEEEecc----ccccccCCCCCcCCCcccccceEEEcceEEEecccchh
Confidence 3456788888877 1 1223322233 356876422111 12211 2223347777776542
Q ss_pred -----cEEEEEECCCCcEEEeEEeCCC
Q 047931 302 -----KNLLVCDCNNEGSEDVAVADVP 323 (339)
Q Consensus 302 -----~~~~~yd~~t~~~~~v~~~~~~ 323 (339)
..++.||++|..|+.|..+|+.
T Consensus 263 ln~HfndLy~FdP~t~~W~~I~~~Gk~ 289 (392)
T KOG4693|consen 263 LNVHFNDLYCFDPKTSMWSVISVRGKY 289 (392)
T ss_pred hhhhhcceeecccccchheeeeccCCC
Confidence 2499999999999999988754
No 28
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=97.53 E-value=0.0024 Score=55.15 Aligned_cols=41 Identities=29% Similarity=0.458 Sum_probs=37.3
Q ss_pred CCCc----HHHHHHHHccCCcccceeeeeccccccccCCChHHHH
Q 047931 2 ATIP----HEIIFEILLRLPVKSLCRFKCVSSSWLALISDPQFVM 42 (339)
Q Consensus 2 ~~Lp----~Dll~eIL~rLP~~~l~r~~~VcK~W~~li~sp~F~~ 42 (339)
..|| +++.+.||+.|...+|..+..|||+|+++++++..-+
T Consensus 76 ~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg~~WK 120 (499)
T KOG0281|consen 76 TALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDGMLWK 120 (499)
T ss_pred HhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccchHHH
Confidence 4689 9999999999999999999999999999999876544
No 29
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.36 E-value=3.1e-05 Score=65.70 Aligned_cols=38 Identities=29% Similarity=0.418 Sum_probs=35.4
Q ss_pred CCCcHHHHHHHHccCCcccceeeeeccccccccCCChH
Q 047931 2 ATIPHEIIFEILLRLPVKSLCRFKCVSSSWLALISDPQ 39 (339)
Q Consensus 2 ~~Lp~Dll~eIL~rLP~~~l~r~~~VcK~W~~li~sp~ 39 (339)
..||||+++.||+.||.|+|.+...|||+|+++.++.+
T Consensus 99 ~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~ 136 (419)
T KOG2120|consen 99 DSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDES 136 (419)
T ss_pred ccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcccccc
Confidence 46999999999999999999999999999999988755
No 30
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=97.35 E-value=0.0094 Score=49.90 Aligned_cols=180 Identities=12% Similarity=0.105 Sum_probs=102.2
Q ss_pred CEEEEEcccccceeecCCCCCCCCCC--CCCCeeEEeeeCCceEEEEEeeEeC--CCcEEEEEEeCCCceEEec---ccC
Q 047931 112 KIFFVLNPLTRESKRIPDVPFEPFPR--SSDDLYGFGCTAEDCKFIKVSFGLK--PNMSVAIFSLRMNSWRRVL---ASG 184 (339)
Q Consensus 112 ~~~~V~NP~T~~~~~LP~~~~~~~~~--~~~~~~~~g~~~~~ykvv~~~~~~~--~~~~~~vyss~~~~W~~~~---~~~ 184 (339)
+-++-++|-|.+|.+.--.... |. -+..++.+| +..-|+.-..+.. -...+++++..|-.|+.+. ++|
T Consensus 105 N~Ly~fDp~t~~W~~p~v~G~v--PgaRDGHsAcV~g---n~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~~~Tkg~Pp 179 (392)
T KOG4693|consen 105 NLLYEFDPETNVWKKPEVEGFV--PGARDGHSACVWG---NQMYIFGGYEEDAQRFSQDTHVLDFATMTWREMHTKGDPP 179 (392)
T ss_pred ceeeeeccccccccccceeeec--CCccCCceeeEEC---cEEEEecChHHHHHhhhccceeEeccceeeeehhccCCCc
Confidence 3577789999998754222111 11 111133333 2222222110111 1556778888999999883 333
Q ss_pred CccCccCCCceEECCeEEEEEecC---CC--------CeEEEEEECCCceeeeec-CCCCCCCCceeEEEEECCeEEEEE
Q 047931 185 YTRPLINVPGTLTNGALHWRLQKH---GG--------DFVLAAFDLVEERFKEFP-LPDASTSFRFFGTGVLGDCLCLQF 252 (339)
Q Consensus 185 ~~~~~~~~~~v~~~G~lyw~~~~~---~~--------~~~il~fD~~~~~~~~i~-lP~~~~~~~~~~l~~~~G~L~~v~ 252 (339)
.... ...++..+|.+|-+.... +. -..|+++|++|+.|...+ -|...........-+.+|++++..
T Consensus 180 rwRD--FH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~GRRSHS~fvYng~~Y~FG 257 (392)
T KOG4693|consen 180 RWRD--FHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKPGGRRSHSTFVYNGKMYMFG 257 (392)
T ss_pred hhhh--hhhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcCCCcccccceEEEcceEEEec
Confidence 3322 345677889999987654 11 357999999999998752 111111123456678899999999
Q ss_pred eC-----CCeEEEEEEcccCCCCCeEEEEEecC-CC-CeeEEEEEeCCeEEEEEC
Q 047931 253 FK-----GKMKEHWIMKEYGVKESWTRVFIHQD-PN-NVWPLCLWKNSTKLLVIN 300 (339)
Q Consensus 253 ~~-----~~~l~iW~l~~~~~~~~W~~~~~i~~-~~-~~~~~~~~~~~~i~~~~~ 300 (339)
.. ...-++|.++. ...-|.++..-.. +- -.+-.++..++++++..+
T Consensus 258 GYng~ln~HfndLy~FdP--~t~~W~~I~~~Gk~P~aRRRqC~~v~g~kv~LFGG 310 (392)
T KOG4693|consen 258 GYNGTLNVHFNDLYCFDP--KTSMWSVISVRGKYPSARRRQCSVVSGGKVYLFGG 310 (392)
T ss_pred ccchhhhhhhcceeeccc--ccchheeeeccCCCCCcccceeEEEECCEEEEecC
Confidence 83 33457788775 2457887643322 11 123344444566666543
No 31
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=97.21 E-value=0.051 Score=51.24 Aligned_cols=202 Identities=17% Similarity=0.117 Sum_probs=119.3
Q ss_pred EEEEEcccccceeecCCCCCCCCCCCCCCeeEEeeeCCceEEEEEeeE--eCCCcEEEEEEeCCCceEEecccCC-ccCc
Q 047931 113 IFFVLNPLTRESKRIPDVPFEPFPRSSDDLYGFGCTAEDCKFIKVSFG--LKPNMSVAIFSLRMNSWRRVLASGY-TRPL 189 (339)
Q Consensus 113 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~~~~~ykvv~~~~~--~~~~~~~~vyss~~~~W~~~~~~~~-~~~~ 189 (339)
.++++|--++.|...........++.......++ ++-++.-... ......+..|+..++.|+.+..... +...
T Consensus 89 dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~----~~l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r 164 (482)
T KOG0379|consen 89 DLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVG----DKLYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGDPPPPR 164 (482)
T ss_pred eeEEeecCCcccccccccCCCCCcccceeEEEEC----CeEEEEccccCCCCChhheEeccCCCCcEEEecCcCCCCCCc
Confidence 5999999998887776544331122222122221 2221111101 1124578999999999998843222 1123
Q ss_pred cCCCceEECCeEEEEEecC--C-CCeEEEEEECCCceeeeecCCCCCCC-CceeEEEEECCeEEEEEeCC----CeEEEE
Q 047931 190 INVPGTLTNGALHWRLQKH--G-GDFVLAAFDLVEERFKEFPLPDASTS-FRFFGTGVLGDCLCLQFFKG----KMKEHW 261 (339)
Q Consensus 190 ~~~~~v~~~G~lyw~~~~~--~-~~~~il~fD~~~~~~~~i~lP~~~~~-~~~~~l~~~~G~L~~v~~~~----~~l~iW 261 (339)
.....+.++.++|..+... + ....+.+||+++.+|..+........ ...+.+++.+++++++.... .-=++|
T Consensus 165 ~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~pR~gH~~~~~~~~~~v~gG~~~~~~~l~D~~ 244 (482)
T KOG0379|consen 165 AGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAPSPRYGHAMVVVGNKLLVFGGGDDGDVYLNDVH 244 (482)
T ss_pred ccceEEEECCEEEEECCccCcccceeeeeeeccccccceecccCCCCCCCCCCceEEEECCeEEEEeccccCCceecceE
Confidence 4455677777888776665 2 35689999999999999854333221 14567788899999998822 334788
Q ss_pred EEcccCCCCCeEEEEEecC---CCCeeEEEEEeCCeEEEEEC--------CcEEEEEECCCCcEEEeEEeC
Q 047931 262 IMKEYGVKESWTRVFIHQD---PNNVWPLCLWKNSTKLLVIN--------RKNLLVCDCNNEGSEDVAVAD 321 (339)
Q Consensus 262 ~l~~~~~~~~W~~~~~i~~---~~~~~~~~~~~~~~i~~~~~--------~~~~~~yd~~t~~~~~v~~~~ 321 (339)
.|+=. ..+|.+...... +-......+. +..+++..+ -..++.+|.+++.|.++...+
T Consensus 245 ~ldl~--~~~W~~~~~~g~~p~~R~~h~~~~~-~~~~~l~gG~~~~~~~~l~~~~~l~~~~~~w~~~~~~~ 312 (482)
T KOG0379|consen 245 ILDLS--TWEWKLLPTGGDLPSPRSGHSLTVS-GDHLLLFGGGTDPKQEPLGDLYGLDLETLVWSKVESVG 312 (482)
T ss_pred eeecc--cceeeeccccCCCCCCcceeeeEEE-CCEEEEEcCCcccccccccccccccccccceeeeeccc
Confidence 88842 366875433321 1113333332 334444332 124899999999999986544
No 32
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=97.18 E-value=0.018 Score=54.20 Aligned_cols=149 Identities=11% Similarity=0.090 Sum_probs=100.6
Q ss_pred EEEEEEeCCCceEEec---ccCCccCccCCCceEECCeEEEEEecC---CCCeEEEEEECCCceeeeecC----CCCCCC
Q 047931 166 SVAIFSLRMNSWRRVL---ASGYTRPLINVPGTLTNGALHWRLQKH---GGDFVLAAFDLVEERFKEFPL----PDASTS 235 (339)
Q Consensus 166 ~~~vyss~~~~W~~~~---~~~~~~~~~~~~~v~~~G~lyw~~~~~---~~~~~il~fD~~~~~~~~i~l----P~~~~~ 235 (339)
.+.+|+.++..|.... ..|. .......+.++..+|.++... .....+..||+.|.+|..+.. |+..
T Consensus 89 dl~~~d~~~~~w~~~~~~g~~p~--~r~g~~~~~~~~~l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r-- 164 (482)
T KOG0379|consen 89 DLYVLDLESQLWTKPAATGDEPS--PRYGHSLSAVGDKLYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGDPPPPR-- 164 (482)
T ss_pred eeEEeecCCcccccccccCCCCC--cccceeEEEECCeEEEEccccCCCCChhheEeccCCCCcEEEecCcCCCCCCc--
Confidence 4888888888997663 2332 234555688999999987765 123479999999999998732 3322
Q ss_pred CceeEEEEECCeEEEEEe---C-CCeEEEEEEcccCCCCCeEEEEEecC---CCCeeEEEEEeCCeEEEEECC------c
Q 047931 236 FRFFGTGVLGDCLCLQFF---K-GKMKEHWIMKEYGVKESWTRVFIHQD---PNNVWPLCLWKNSTKLLVINR------K 302 (339)
Q Consensus 236 ~~~~~l~~~~G~L~~v~~---~-~~~l~iW~l~~~~~~~~W~~~~~i~~---~~~~~~~~~~~~~~i~~~~~~------~ 302 (339)
....++..+.+|++... . ...-++|+++-. ..+|.++.+... +-....+++.++.-+++...+ .
T Consensus 165 -~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~--~~~W~~~~~~g~~P~pR~gH~~~~~~~~~~v~gG~~~~~~~l~ 241 (482)
T KOG0379|consen 165 -AGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLE--TSTWSELDTQGEAPSPRYGHAMVVVGNKLLVFGGGDDGDVYLN 241 (482)
T ss_pred -ccceEEEECCEEEEECCccCcccceeeeeeeccc--cccceecccCCCCCCCCCCceEEEECCeEEEEeccccCCceec
Confidence 45567777888988888 2 245688888842 356999877754 233556666655333333322 1
Q ss_pred EEEEEECCCCcEEEeEEeC
Q 047931 303 NLLVCDCNNEGSEDVAVAD 321 (339)
Q Consensus 303 ~~~~yd~~t~~~~~v~~~~ 321 (339)
.+..+|+.+.+|+.+...|
T Consensus 242 D~~~ldl~~~~W~~~~~~g 260 (482)
T KOG0379|consen 242 DVHILDLSTWEWKLLPTGG 260 (482)
T ss_pred ceEeeecccceeeeccccC
Confidence 3999999999999665444
No 33
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=96.80 E-value=0.069 Score=47.67 Aligned_cols=143 Identities=9% Similarity=0.104 Sum_probs=90.3
Q ss_pred EEEEEEeCCCceEEecccCCccCccCCCceEEC-CeEEEEEecC-CC-------CeEEEEEECCCceeeeecCCCCCCCC
Q 047931 166 SVAIFSLRMNSWRRVLASGYTRPLINVPGTLTN-GALHWRLQKH-GG-------DFVLAAFDLVEERFKEFPLPDASTSF 236 (339)
Q Consensus 166 ~~~vyss~~~~W~~~~~~~~~~~~~~~~~v~~~-G~lyw~~~~~-~~-------~~~il~fD~~~~~~~~i~lP~~~~~~ 236 (339)
.+..|+-+++.|+.+..+..+.......+|.+- |.+|..+... .+ ..-+-.||+.+.+|..+.++......
T Consensus 99 dLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g~PS~R 178 (521)
T KOG1230|consen 99 DLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGGGPSPR 178 (521)
T ss_pred eeeEEeccccceeEeccCCCcCCCccceeEEeccCeEEEeccccCCcchhhhhhhhheeeeeeccchheeeccCCCCCCC
Confidence 578899999999998543222223334455555 6444444333 11 13578999999999999887755444
Q ss_pred ceeEEEEECCeEEEEEe-C-CC-----eEEEEEEcccCCCCCeEEEEEec--C-C-CCeeEEEEEeCCeEEEEECC----
Q 047931 237 RFFGTGVLGDCLCLQFF-K-GK-----MKEHWIMKEYGVKESWTRVFIHQ--D-P-NNVWPLCLWKNSTKLLVINR---- 301 (339)
Q Consensus 237 ~~~~l~~~~G~L~~v~~-~-~~-----~l~iW~l~~~~~~~~W~~~~~i~--~-~-~~~~~~~~~~~~~i~~~~~~---- 301 (339)
..++++....+|.+... . .. --+||.++= +..+|.++..-. + + .|+ -+.+.++|.|++..+.
T Consensus 179 SGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdL--dtykW~Klepsga~PtpRSGc-q~~vtpqg~i~vyGGYsK~~ 255 (521)
T KOG1230|consen 179 SGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDL--DTYKWSKLEPSGAGPTPRSGC-QFSVTPQGGIVVYGGYSKQR 255 (521)
T ss_pred ccceeEEeeeeEEEEcceecCCCceEEeeeeEEEec--cceeeeeccCCCCCCCCCCcc-eEEecCCCcEEEEcchhHhh
Confidence 56788899999999887 2 11 136676653 136799886522 1 2 343 4455566777765431
Q ss_pred -----------cEEEEEECCC
Q 047931 302 -----------KNLLVCDCNN 311 (339)
Q Consensus 302 -----------~~~~~yd~~t 311 (339)
..++..++++
T Consensus 256 ~kK~~dKG~~hsDmf~L~p~~ 276 (521)
T KOG1230|consen 256 VKKDVDKGTRHSDMFLLKPED 276 (521)
T ss_pred hhhhhhcCceeeeeeeecCCc
Confidence 1388999988
No 34
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=96.58 E-value=0.00044 Score=59.00 Aligned_cols=46 Identities=20% Similarity=0.395 Sum_probs=40.2
Q ss_pred CCCCcHHHHHHHHccCC-----cccceeeeeccccccccCCChHHHHHHhc
Q 047931 1 MATIPHEIIFEILLRLP-----VKSLCRFKCVSSSWLALISDPQFVMLQLH 46 (339)
Q Consensus 1 ~~~Lp~Dll~eIL~rLP-----~~~l~r~~~VcK~W~~li~sp~F~~~~~~ 46 (339)
+..||||+|.+||.++= ..+|.++.+|||.|+-...+|.|-+..+.
T Consensus 107 ~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~aC~ 157 (366)
T KOG2997|consen 107 ISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRLACL 157 (366)
T ss_pred hhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHHHHH
Confidence 35799999999998754 59999999999999999999999877654
No 35
>PF13964 Kelch_6: Kelch motif
Probab=95.94 E-value=0.022 Score=35.15 Aligned_cols=40 Identities=10% Similarity=0.170 Sum_probs=32.2
Q ss_pred CCCceEECCeEEEEEecCC---CCeEEEEEECCCceeeee-cCC
Q 047931 191 NVPGTLTNGALHWRLQKHG---GDFVLAAFDLVEERFKEF-PLP 230 (339)
Q Consensus 191 ~~~~v~~~G~lyw~~~~~~---~~~~il~fD~~~~~~~~i-~lP 230 (339)
..+.|.++|.+|.++...+ ....+..||+++++|+.+ ++|
T Consensus 4 ~~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~mp 47 (50)
T PF13964_consen 4 GHSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPMP 47 (50)
T ss_pred cCEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCCCC
Confidence 3457899999999987752 246899999999999998 444
No 36
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=95.91 E-value=0.46 Score=42.69 Aligned_cols=146 Identities=13% Similarity=0.132 Sum_probs=84.0
Q ss_pred EEeeeCceEEEccCCCEEEEEcccccceeecCCCCCCCCCCCCCCeeEEee-eCCceEEEEEeeEeCC----C---cEEE
Q 047931 97 IVGSCNGLVCTTPKPKIFFVLNPLTRESKRIPDVPFEPFPRSSDDLYGFGC-TAEDCKFIKVSFGLKP----N---MSVA 168 (339)
Q Consensus 97 ~~~s~~GLl~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~-~~~~ykvv~~~~~~~~----~---~~~~ 168 (339)
+.+-.+.-|+..+......|+++.|+....+|.+... .. ..+.. ..+. +..+...... . ..+|
T Consensus 71 F~al~gskIv~~d~~~~t~vyDt~t~av~~~P~l~~p----k~---~pisv~VG~~--LY~m~~~~~~~~~~~~~~~~FE 141 (342)
T PF07893_consen 71 FFALHGSKIVAVDQSGRTLVYDTDTRAVATGPRLHSP----KR---CPISVSVGDK--LYAMDRSPFPEPAGRPDFPCFE 141 (342)
T ss_pred EEEecCCeEEEEcCCCCeEEEECCCCeEeccCCCCCC----Cc---ceEEEEeCCe--EEEeeccCccccccCccceeEE
Confidence 3333333444334456799999999999999987654 11 11111 1222 3333211000 0 1555
Q ss_pred EE--E--------eCCCceEEecccCCccCc------cCCCceEECCeEEEEEecCCCCeEEEEEECCCceeeee---cC
Q 047931 169 IF--S--------LRMNSWRRVLASGYTRPL------INVPGTLTNGALHWRLQKHGGDFVLAAFDLVEERFKEF---PL 229 (339)
Q Consensus 169 vy--s--------s~~~~W~~~~~~~~~~~~------~~~~~v~~~G~lyw~~~~~~~~~~il~fD~~~~~~~~i---~l 229 (339)
++ . .++..|+.++.+|+.... ..+.+|+ +|.--|++..+ ......+||+++.+|+.. .|
T Consensus 142 ~l~~~~~~~~~~~~~~w~W~~LP~PPf~~~~~~~~~~i~sYavv-~g~~I~vS~~~-~~~GTysfDt~~~~W~~~GdW~L 219 (342)
T PF07893_consen 142 ALVYRPPPDDPSPEESWSWRSLPPPPFVRDRRYSDYRITSYAVV-DGRTIFVSVNG-RRWGTYSFDTESHEWRKHGDWML 219 (342)
T ss_pred EeccccccccccCCCcceEEcCCCCCccccCCcccceEEEEEEe-cCCeEEEEecC-CceEEEEEEcCCcceeeccceec
Confidence 55 2 234688888776654432 3344566 89888987764 013799999999999998 78
Q ss_pred CCCCCC----CceeEEEEE--C--CeEEEEEe
Q 047931 230 PDASTS----FRFFGTGVL--G--DCLCLQFF 253 (339)
Q Consensus 230 P~~~~~----~~~~~l~~~--~--G~L~~v~~ 253 (339)
|..... ..+..++-+ + |.||....
T Consensus 220 PF~G~a~y~~el~~W~Gls~~~~~~~lca~dv 251 (342)
T PF07893_consen 220 PFHGQAEYVPELDLWFGLSSDGGGGHLCACDV 251 (342)
T ss_pred CcCCccEECCCcCeEEEeccCCCCcEEEEEec
Confidence 876532 123334333 3 47777666
No 37
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=95.78 E-value=0.54 Score=40.08 Aligned_cols=123 Identities=13% Similarity=0.126 Sum_probs=80.0
Q ss_pred cCCCceEECCeEEEEEecCCCCeEEEEEECCCceee-eecCCCCCCC---------CceeEEEEECCeEEEEEe---CCC
Q 047931 190 INVPGTLTNGALHWRLQKHGGDFVLAAFDLVEERFK-EFPLPDASTS---------FRFFGTGVLGDCLCLQFF---KGK 256 (339)
Q Consensus 190 ~~~~~v~~~G~lyw~~~~~~~~~~il~fD~~~~~~~-~i~lP~~~~~---------~~~~~l~~~~G~L~~v~~---~~~ 256 (339)
.++..|..||++|...... ..|+.||+.+++.. ...||..... ...+.+++-+..|.++.. ...
T Consensus 70 ~GtG~vVYngslYY~~~~s---~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~g 146 (250)
T PF02191_consen 70 QGTGHVVYNGSLYYNKYNS---RNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNNG 146 (250)
T ss_pred ccCCeEEECCcEEEEecCC---ceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCCC
Confidence 3455688999999988754 68999999999988 7788865422 135678888999999988 334
Q ss_pred eEEEEEEccc--CCCCCeEEEEEecCC-CCeeEEEEEeCCeEEEEEC-----CcEEEEEECCCCcEEEeEEe
Q 047931 257 MKEHWIMKEY--GVKESWTRVFIHQDP-NNVWPLCLWKNSTKLLVIN-----RKNLLVCDCNNEGSEDVAVA 320 (339)
Q Consensus 257 ~l~iW~l~~~--~~~~~W~~~~~i~~~-~~~~~~~~~~~~~i~~~~~-----~~~~~~yd~~t~~~~~v~~~ 320 (339)
.+.|-.|+.. .....|.. .++.+ .+- +|--.|.++.... ..-.++||..+++-+.+.+.
T Consensus 147 ~ivvskld~~tL~v~~tw~T--~~~k~~~~n---aFmvCGvLY~~~s~~~~~~~I~yafDt~t~~~~~~~i~ 213 (250)
T PF02191_consen 147 NIVVSKLDPETLSVEQTWNT--SYPKRSAGN---AFMVCGVLYATDSYDTRDTEIFYAFDTYTGKEEDVSIP 213 (250)
T ss_pred cEEEEeeCcccCceEEEEEe--ccCchhhcc---eeeEeeEEEEEEECCCCCcEEEEEEECCCCceeceeee
Confidence 6888888753 23356763 22221 221 1111233333222 12378999999988877653
No 38
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=95.64 E-value=1.1 Score=37.53 Aligned_cols=191 Identities=12% Similarity=0.040 Sum_probs=94.1
Q ss_pred eCceEEEccCCCEEEEEcccccceeecCCCCCCCCCCCCCCeeEEeeeCCceEEEEEeeEeCCCcEEEEEEeCCC--ceE
Q 047931 101 CNGLVCTTPKPKIFFVLNPLTRESKRIPDVPFEPFPRSSDDLYGFGCTAEDCKFIKVSFGLKPNMSVAIFSLRMN--SWR 178 (339)
Q Consensus 101 ~~GLl~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~~~~~ykvv~~~~~~~~~~~~~vyss~~~--~W~ 178 (339)
.+|.+........++.+|+.|++...--..+.. ... . ... ..+ +++... ....+..++..++ .|+
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~----~~~-~-~~~-~~~--~v~v~~----~~~~l~~~d~~tG~~~W~ 101 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGP----ISG-A-PVV-DGG--RVYVGT----SDGSLYALDAKTGKVLWS 101 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEECSSC----GGS-G-EEE-ETT--EEEEEE----TTSEEEEEETTTSCEEEE
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeecccc----ccc-e-eee-ccc--cccccc----ceeeeEecccCCcceeee
Confidence 677777766678999999999985432222221 000 1 000 111 122211 1226677776554 798
Q ss_pred E-ecccCCccCccCCCceEECCeEEEEEecCCCCeEEEEEECCCcee--ee-ecCCCCCCC-----CceeEEEEECCeEE
Q 047931 179 R-VLASGYTRPLINVPGTLTNGALHWRLQKHGGDFVLAAFDLVEERF--KE-FPLPDASTS-----FRFFGTGVLGDCLC 249 (339)
Q Consensus 179 ~-~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~il~fD~~~~~~--~~-i~lP~~~~~-----~~~~~l~~~~G~L~ 249 (339)
. ....+.............++.+|.....+ .+.++|+++.+- .. +..|..... .....+...+|.++
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g----~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 177 (238)
T PF13360_consen 102 IYLTSSPPAGVRSSSSPAVDGDRLYVGTSSG----KLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVY 177 (238)
T ss_dssp EEE-SSCTCSTB--SEEEEETTEEEEEETCS----EEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEE
T ss_pred eccccccccccccccCceEecCEEEEEeccC----cEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECCEEE
Confidence 4 43322211112222334456676665554 899999997654 32 233332110 01233344467666
Q ss_pred EEEeCCCeEEEEEEcccCCCCCeEEEEEecCCCCeeEEEEEeCCeEEEEECCcEEEEEECCCCcEEE
Q 047931 250 LQFFKGKMKEHWIMKEYGVKESWTRVFIHQDPNNVWPLCLWKNSTKLLVINRKNLLVCDCNNEGSED 316 (339)
Q Consensus 250 ~v~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~yd~~t~~~~~ 316 (339)
+.......+.+ .++. ....|.. . +.. ........++.+++...+.+++.+|++|++..+
T Consensus 178 ~~~~~g~~~~~-d~~t--g~~~w~~-~-~~~---~~~~~~~~~~~l~~~~~~~~l~~~d~~tG~~~W 236 (238)
T PF13360_consen 178 VSSGDGRVVAV-DLAT--GEKLWSK-P-ISG---IYSLPSVDGGTLYVTSSDGRLYALDLKTGKVVW 236 (238)
T ss_dssp EECCTSSEEEE-ETTT--TEEEEEE-C-SS----ECECEECCCTEEEEEETTTEEEEEETTTTEEEE
T ss_pred EEcCCCeEEEE-ECCC--CCEEEEe-c-CCC---ccCCceeeCCEEEEEeCCCEEEEEECCCCCEEe
Confidence 65554443443 3332 1224732 1 211 122122234445555557789999999999665
No 39
>smart00284 OLF Olfactomedin-like domains.
Probab=95.33 E-value=0.82 Score=38.88 Aligned_cols=127 Identities=13% Similarity=0.136 Sum_probs=79.9
Q ss_pred ccCCccCccCCCceEECCeEEEEEecCCCCeEEEEEECCCceeeee-cCCCCC-C--------CCceeEEEEECCeEEEE
Q 047931 182 ASGYTRPLINVPGTLTNGALHWRLQKHGGDFVLAAFDLVEERFKEF-PLPDAS-T--------SFRFFGTGVLGDCLCLQ 251 (339)
Q Consensus 182 ~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~il~fD~~~~~~~~i-~lP~~~-~--------~~~~~~l~~~~G~L~~v 251 (339)
.+|.. ..+...|+.||++|...... ..|+.||+.+++.... .||... . ....+.|++-+..|.++
T Consensus 69 ~Lp~~--~~GtG~VVYngslYY~~~~s---~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvI 143 (255)
T smart00284 69 PLPHA--GQGTGVVVYNGSLYFNKFNS---HDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVI 143 (255)
T ss_pred ECCCc--cccccEEEECceEEEEecCC---ccEEEEECCCCcEEEEEecCccccccccccccCCCccEEEEEcCCceEEE
Confidence 35543 23556799999999966553 5799999999998644 577432 1 11356788999999999
Q ss_pred Ee---CCCeEEEEEEcccC--CCCCeEEEEEecCC-CC-eeEEEEEeCCeEEEEEC-----CcEEEEEECCCCcEEEeEE
Q 047931 252 FF---KGKMKEHWIMKEYG--VKESWTRVFIHQDP-NN-VWPLCLWKNSTKLLVIN-----RKNLLVCDCNNEGSEDVAV 319 (339)
Q Consensus 252 ~~---~~~~l~iW~l~~~~--~~~~W~~~~~i~~~-~~-~~~~~~~~~~~i~~~~~-----~~~~~~yd~~t~~~~~v~~ 319 (339)
.. ....|.|-.|+... ....|.. .++.+ .+ +-++ .|.++.... .+-.+.||..|++-+.+.+
T Consensus 144 Yat~~~~g~ivvSkLnp~tL~ve~tW~T--~~~k~sa~naFmv----CGvLY~~~s~~~~~~~I~yayDt~t~~~~~~~i 217 (255)
T smart00284 144 YATEQNAGKIVISKLNPATLTIENTWIT--TYNKRSASNAFMI----CGILYVTRSLGSKGEKVFYAYDTNTGKEGHLDI 217 (255)
T ss_pred EeccCCCCCEEEEeeCcccceEEEEEEc--CCCcccccccEEE----eeEEEEEccCCCCCcEEEEEEECCCCccceeee
Confidence 87 45678888888632 2346754 22221 21 1111 133333321 2238899999988776655
No 40
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=94.98 E-value=0.062 Score=32.46 Aligned_cols=36 Identities=8% Similarity=0.085 Sum_probs=30.5
Q ss_pred CCceEECCeEEEEEecCC---CCeEEEEEECCCceeeee
Q 047931 192 VPGTLTNGALHWRLQKHG---GDFVLAAFDLVEERFKEF 227 (339)
Q Consensus 192 ~~~v~~~G~lyw~~~~~~---~~~~il~fD~~~~~~~~i 227 (339)
...+.++|.+|-+++..+ ....+..||+.+++|..+
T Consensus 5 ~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~ 43 (47)
T PF01344_consen 5 HAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEEL 43 (47)
T ss_dssp EEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEE
T ss_pred CEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEc
Confidence 456899999999987762 357899999999999987
No 41
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=94.62 E-value=4.4 Score=38.82 Aligned_cols=273 Identities=12% Similarity=0.037 Sum_probs=129.4
Q ss_pred CCCCcHHHHHHHHccCCcccceeeeeccccccccCCChHHHHH-HhcccCCCc-----EEEecCC----Cc-cccCCCcc
Q 047931 1 MATIPHEIIFEILLRLPVKSLCRFKCVSSSWLALISDPQFVML-QLHRNKRRN-----LILSNLS----GN-SAYNYSID 69 (339)
Q Consensus 1 ~~~Lp~Dll~eIL~rLP~~~l~r~~~VcK~W~~li~sp~F~~~-~~~~~~~~~-----l~~~~~~----~~-~~~~~~~~ 69 (339)
+..||.++...||..|+.+++.++++||+.|+.++.+.....+ ........+ -.-.... .. ........
T Consensus 108 i~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ks~~~~~~~ 187 (537)
T KOG0274|consen 108 LSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVWWRMCRELIGRLPPKCEKGLPLKSGFKGRPWKSFYRRRFR 187 (537)
T ss_pred hhcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchhhhhhhhhcccCCcccCcccccccccccchhhhhhhhhhh
Confidence 3579999999999999999999999999999999987655442 222222111 0000000 00 00000000
Q ss_pred cccceeeeecCC----CCcCCCCCCCCceeEEEee-eCceEEEccCCCEEEEEcccccceeecCC-CCCCCCCCCCCCee
Q 047931 70 EEKLVSVELDFP----LEQDANRDGSGYLARIVGS-CNGLVCTTPKPKIFFVLNPLTRESKRIPD-VPFEPFPRSSDDLY 143 (339)
Q Consensus 70 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~s-~~GLl~~~~~~~~~~V~NP~T~~~~~LP~-~~~~~~~~~~~~~~ 143 (339)
.. ..+.....+ +... ... ..+... .+|.+........+.+++..++....-+. .+.. ..-
T Consensus 188 ~~-~~~~~~~~~~~~~~~~~--~~~----~~~~~q~~~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g-------~V~ 253 (537)
T KOG0274|consen 188 LS-KNWRKLFRRGYKVLLGT--DDH----VVLCLQLHDGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFG-------GVW 253 (537)
T ss_pred cc-ccccccccccceeeccc--Ccc----hhhhheeecCeEEecCCCceeEEeecccceEEEeeccCCCC-------Cce
Confidence 00 000000000 0000 000 011111 13333333334455689999988766532 2222 144
Q ss_pred EEeeeCCceEEEEEeeEeCCCcEEEEEEeCCCceEEecccCCccCccCCCceE--ECCeEEEEEecCCCCeEEEEEECCC
Q 047931 144 GFGCTAEDCKFIKVSFGLKPNMSVAIFSLRMNSWRRVLASGYTRPLINVPGTL--TNGALHWRLQKHGGDFVLAAFDLVE 221 (339)
Q Consensus 144 ~~g~~~~~ykvv~~~~~~~~~~~~~vyss~~~~W~~~~~~~~~~~~~~~~~v~--~~G~lyw~~~~~~~~~~il~fD~~~ 221 (339)
++.+...+.+++-.. ....+.|.+-.++.-..+-. .....+. ..+..+-... ..+..|.+.|+.+
T Consensus 254 ~l~~~~~~~~lvsgS----~D~t~rvWd~~sg~C~~~l~-------gh~stv~~~~~~~~~~~sg--s~D~tVkVW~v~n 320 (537)
T KOG0274|consen 254 GLAFPSGGDKLVSGS----TDKTERVWDCSTGECTHSLQ-------GHTSSVRCLTIDPFLLVSG--SRDNTVKVWDVTN 320 (537)
T ss_pred eEEEecCCCEEEEEe----cCCcEEeEecCCCcEEEEec-------CCCceEEEEEccCceEeec--cCCceEEEEeccC
Confidence 455533455555433 13344555555544433210 0011111 1122222221 1246888999887
Q ss_pred ceeeee-cCCCCCCCCceeEEEEECCeEEEEEeCCCeEEEEEEcccCCCCCeEEEEEecCCCCeeEEEEEeCC-eEEEEE
Q 047931 222 ERFKEF-PLPDASTSFRFFGTGVLGDCLCLQFFKGKMKEHWIMKEYGVKESWTRVFIHQDPNNVWPLCLWKNS-TKLLVI 299 (339)
Q Consensus 222 ~~~~~i-~lP~~~~~~~~~~l~~~~G~L~~v~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~-~i~~~~ 299 (339)
...-.+ ..+. ....-+.+++.+.+.+..+..+.||..... ..++++...- .++.++..++ +.++..
T Consensus 321 ~~~l~l~~~h~-----~~V~~v~~~~~~lvsgs~d~~v~VW~~~~~------~cl~sl~gH~-~~V~sl~~~~~~~~~Sg 388 (537)
T KOG0274|consen 321 GACLNLLRGHT-----GPVNCVQLDEPLLVSGSYDGTVKVWDPRTG------KCLKSLSGHT-GRVYSLIVDSENRLLSG 388 (537)
T ss_pred cceEEEecccc-----ccEEEEEecCCEEEEEecCceEEEEEhhhc------eeeeeecCCc-ceEEEEEecCcceEEee
Confidence 665544 3211 123334556777777776669999998731 1223333221 2222222233 455533
Q ss_pred -CCcEEEEEECCCC
Q 047931 300 -NRKNLLVCDCNNE 312 (339)
Q Consensus 300 -~~~~~~~yd~~t~ 312 (339)
-+..+-.+|++++
T Consensus 389 s~D~~IkvWdl~~~ 402 (537)
T KOG0274|consen 389 SLDTTIKVWDLRTK 402 (537)
T ss_pred eeccceEeecCCch
Confidence 3445888998888
No 42
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=94.45 E-value=1.1 Score=41.40 Aligned_cols=158 Identities=13% Similarity=0.085 Sum_probs=82.2
Q ss_pred CEEEEEcccccceeecCCCCCCCCCCCCCCeeEEeeeCCceEEEEEee-EeCCCcEEEEEEeCC--CceEEecc-cC---
Q 047931 112 KIFFVLNPLTRESKRIPDVPFEPFPRSSDDLYGFGCTAEDCKFIKVSF-GLKPNMSVAIFSLRM--NSWRRVLA-SG--- 184 (339)
Q Consensus 112 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~~~~~ykvv~~~~-~~~~~~~~~vyss~~--~~W~~~~~-~~--- 184 (339)
+++-|+|-.|+||. +|.-... .-..+.++|+..+.-+++++.- .....+.=+.|.+.. ..|+.+.. .|
T Consensus 57 DELHvYNTatnqWf-~PavrGD----iPpgcAA~GfvcdGtrilvFGGMvEYGkYsNdLYELQasRWeWkrlkp~~p~nG 131 (830)
T KOG4152|consen 57 DELHVYNTATNQWF-APAVRGD----IPPGCAAFGFVCDGTRILVFGGMVEYGKYSNDLYELQASRWEWKRLKPKTPKNG 131 (830)
T ss_pred hhhhhhccccceee-cchhcCC----CCCchhhcceEecCceEEEEccEeeeccccchHHHhhhhhhhHhhcCCCCCCCC
Confidence 47889999999996 3443322 1112667777333333443330 112355556676665 56677632 21
Q ss_pred -CccCccCCCceEECCeEEEEEecC----C---------CCeEEEEEECCCce--eeee----cCCCCCCCCceeEEEEE
Q 047931 185 -YTRPLINVPGTLTNGALHWRLQKH----G---------GDFVLAAFDLVEER--FKEF----PLPDASTSFRFFGTGVL 244 (339)
Q Consensus 185 -~~~~~~~~~~v~~~G~lyw~~~~~----~---------~~~~il~fD~~~~~--~~~i----~lP~~~~~~~~~~l~~~ 244 (339)
......+.+=+.++++.|.+..-. + ++.+++-+-...+. |... .+|...+.+.-..-++-
T Consensus 132 ~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknNvPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRESHTAViY~eK 211 (830)
T KOG4152|consen 132 PPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNVPRYLNDLYILELRPGSGVVAWDIPITYGVLPPPRESHTAVIYTEK 211 (830)
T ss_pred CCCCCccCceeEEeccEeEEeccccccccCcccccchhhcceEEEEeccCCceEEEecccccCCCCCCcccceeEEEEec
Confidence 111223333466778999887543 1 13456655555443 3331 45555543222122233
Q ss_pred CC---eEEEEEe-CCCeE-EEEEEcccCCCCCeEEEE
Q 047931 245 GD---CLCLQFF-KGKMK-EHWIMKEYGVKESWTRVF 276 (339)
Q Consensus 245 ~G---~L~~v~~-~~~~l-~iW~l~~~~~~~~W~~~~ 276 (339)
|. ++++... ...++ ++|.|+=. .-.|.+..
T Consensus 212 Ds~~skmvvyGGM~G~RLgDLW~Ldl~--Tl~W~kp~ 246 (830)
T KOG4152|consen 212 DSKKSKMVVYGGMSGCRLGDLWTLDLD--TLTWNKPS 246 (830)
T ss_pred cCCcceEEEEcccccccccceeEEecc--eeeccccc
Confidence 33 4555554 44444 78999842 46798763
No 43
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.22 E-value=3.8 Score=36.36 Aligned_cols=130 Identities=17% Similarity=0.117 Sum_probs=77.2
Q ss_pred CcEEEEEEeCCCceEEecccCCccCccCCCceEECCe-EEEEEecC-----CCCeEEEEEECCCceeeee-cCCCCCCCC
Q 047931 164 NMSVAIFSLRMNSWRRVLASGYTRPLINVPGTLTNGA-LHWRLQKH-----GGDFVLAAFDLVEERFKEF-PLPDASTSF 236 (339)
Q Consensus 164 ~~~~~vyss~~~~W~~~~~~~~~~~~~~~~~v~~~G~-lyw~~~~~-----~~~~~il~fD~~~~~~~~i-~lP~~~~~~ 236 (339)
...+-.|+..++.|+.....|+... ..+++...|. +-.+..+- .......-|.-...+|..+ ++|......
T Consensus 195 n~ev~sy~p~~n~W~~~G~~pf~~~--aGsa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~l~~lp~~~~~~ 272 (381)
T COG3055 195 NKEVLSYDPSTNQWRNLGENPFYGN--AGSAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWLKLSDLPAPIGSN 272 (381)
T ss_pred cccccccccccchhhhcCcCcccCc--cCcceeecCCeEEEEcceecCCccccceeEEEeccCceeeeeccCCCCCCCCC
Confidence 5677789999999999977776431 2234444444 44443332 1123455555667889887 677655432
Q ss_pred ----ceeEEEEECCeEEEEEeC----------------------CCeEEEEEEcccCCCCCeEEEEEecCCCCeeEEEEE
Q 047931 237 ----RFFGTGVLGDCLCLQFFK----------------------GKMKEHWIMKEYGVKESWTRVFIHQDPNNVWPLCLW 290 (339)
Q Consensus 237 ----~~~~l~~~~G~L~~v~~~----------------------~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~ 290 (339)
....-+.++|.+.+.... .-+-+||.+++ .+|..+..++..+ +.-+.+.
T Consensus 273 ~eGvAGaf~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d~----g~Wk~~GeLp~~l-~YG~s~~ 347 (381)
T COG3055 273 KEGVAGAFSGKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFDN----GSWKIVGELPQGL-AYGVSLS 347 (381)
T ss_pred ccccceeccceeCCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEcC----CceeeecccCCCc-cceEEEe
Confidence 122334556666555541 23457888884 6799888887766 3333444
Q ss_pred eCCeEEEEEC
Q 047931 291 KNSTKLLVIN 300 (339)
Q Consensus 291 ~~~~i~~~~~ 300 (339)
.++.|+++.+
T Consensus 348 ~nn~vl~IGG 357 (381)
T COG3055 348 YNNKVLLIGG 357 (381)
T ss_pred cCCcEEEEcc
Confidence 4556777665
No 44
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.77 E-value=0.99 Score=39.85 Aligned_cols=113 Identities=13% Similarity=0.080 Sum_probs=70.0
Q ss_pred cEEEEEEeCCCceEEeccc-CCccCccCCCceEECC-eEEEEEecC-----------------------------C----
Q 047931 165 MSVAIFSLRMNSWRRVLAS-GYTRPLINVPGTLTNG-ALHWRLQKH-----------------------------G---- 209 (339)
Q Consensus 165 ~~~~vyss~~~~W~~~~~~-~~~~~~~~~~~v~~~G-~lyw~~~~~-----------------------------~---- 209 (339)
..+..|++.+++|..++.. |.. .....++..++ .+|....-. +
T Consensus 113 nd~Y~y~p~~nsW~kl~t~sP~g--l~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~ 190 (381)
T COG3055 113 NDAYRYDPSTNSWHKLDTRSPTG--LVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAE 190 (381)
T ss_pred eeeEEecCCCChhheeccccccc--cccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHH
Confidence 3578899999999988543 444 23344455555 777765221 0
Q ss_pred ---CCeEEEEEECCCceeeee-cCCCCCCCCceeEEEEECCeEEEEEe----CCCeEEEEEEcccCCCCCeEEEEEecCC
Q 047931 210 ---GDFVLAAFDLVEERFKEF-PLPDASTSFRFFGTGVLGDCLCLQFF----KGKMKEHWIMKEYGVKESWTRVFIHQDP 281 (339)
Q Consensus 210 ---~~~~il~fD~~~~~~~~i-~lP~~~~~~~~~~l~~~~G~L~~v~~----~~~~l~iW~l~~~~~~~~W~~~~~i~~~ 281 (339)
....+++||+.+++|+.. ..|..... ....+.-+++|.++.. .-.+-.+|+.+--++..+|.+.-.++.+
T Consensus 191 dy~~n~ev~sy~p~~n~W~~~G~~pf~~~a--Gsa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~l~~lp~~ 268 (381)
T COG3055 191 DYFFNKEVLSYDPSTNQWRNLGENPFYGNA--GSAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWLKLSDLPAP 268 (381)
T ss_pred HhcccccccccccccchhhhcCcCcccCcc--CcceeecCCeEEEEcceecCCccccceeEEEeccCceeeeeccCCCCC
Confidence 024699999999999998 46665432 2223334667888887 1234455555432345789988666543
No 45
>PF07762 DUF1618: Protein of unknown function (DUF1618); InterPro: IPR011676 The proteins of this entry are mainly hypothetical proteins expressed by Oryza sativa.
Probab=93.55 E-value=0.64 Score=35.28 Aligned_cols=68 Identities=18% Similarity=0.283 Sum_probs=50.2
Q ss_pred EEEEEECCCc--eeeeecCCCCCCC-----------CceeEEEEECCeEEEEEe--C--------CCeEEEEEEccc-CC
Q 047931 213 VLAAFDLVEE--RFKEFPLPDASTS-----------FRFFGTGVLGDCLCLQFF--K--------GKMKEHWIMKEY-GV 268 (339)
Q Consensus 213 ~il~fD~~~~--~~~~i~lP~~~~~-----------~~~~~l~~~~G~L~~v~~--~--------~~~l~iW~l~~~-~~ 268 (339)
+|+.+|+-++ .++.++||..... .....+++.+|+|-+|.. . ...+.+|.|... +.
T Consensus 7 GIL~CD~~~~~p~l~~vpLP~~~~~~~~~~~~~~~~~~~R~v~v~~G~ikfV~i~~~~~~~~~~~~~~vt~Wtl~~~~~~ 86 (131)
T PF07762_consen 7 GILFCDVFDDSPVLRFVPLPPPCPPNRRDDRPRGSPESYRDVGVSGGKIKFVEIDGYEDDGPPSGGWTVTTWTLKDPEGS 86 (131)
T ss_pred CEEEEECCCCCccEEEEeCCCccccCcccccccCCchhCceEEecCCCEEEEEEecccCCCcccCCcEEEEEEeccCCCC
Confidence 6888998865 6778899976521 123467788999999988 1 336999999974 23
Q ss_pred CCCeEEEEEecC
Q 047931 269 KESWTRVFIHQD 280 (339)
Q Consensus 269 ~~~W~~~~~i~~ 280 (339)
..+|.+-+++..
T Consensus 87 ~~~W~~d~~v~~ 98 (131)
T PF07762_consen 87 SWEWKKDCEVDL 98 (131)
T ss_pred CCCEEEeEEEEh
Confidence 578999998865
No 46
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=92.82 E-value=0.33 Score=29.62 Aligned_cols=39 Identities=10% Similarity=0.068 Sum_probs=31.0
Q ss_pred CCCceEECCeEEEEEec--C---CCCeEEEEEECCCceeeeecC
Q 047931 191 NVPGTLTNGALHWRLQK--H---GGDFVLAAFDLVEERFKEFPL 229 (339)
Q Consensus 191 ~~~~v~~~G~lyw~~~~--~---~~~~~il~fD~~~~~~~~i~l 229 (339)
....+.++|++|-+... . .....+..||+++++|+.++.
T Consensus 4 ~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~ 47 (49)
T PF07646_consen 4 GHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSP 47 (49)
T ss_pred ceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCC
Confidence 34578999999999877 2 224679999999999998753
No 47
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=92.39 E-value=4.3 Score=37.13 Aligned_cols=114 Identities=11% Similarity=0.029 Sum_probs=68.0
Q ss_pred eEECCe-EEEEEecCCCCeEEEEEECCCceeeeecCCCCCCCCceeEEEEE-CCeEEEEEeCCCeEEEEEEcccCCCCCe
Q 047931 195 TLTNGA-LHWRLQKHGGDFVLAAFDLVEERFKEFPLPDASTSFRFFGTGVL-GDCLCLQFFKGKMKEHWIMKEYGVKESW 272 (339)
Q Consensus 195 v~~~G~-lyw~~~~~~~~~~il~fD~~~~~~~~i~lP~~~~~~~~~~l~~~-~G~L~~v~~~~~~l~iW~l~~~~~~~~W 272 (339)
.+-+|. .-..+.. ..++.+||+++.++..+..|...+........+. +|...++.+....|.+-..+. .+|
T Consensus 265 f~p~G~~~i~~s~r---rky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT----~el 337 (514)
T KOG2055|consen 265 FAPNGHSVIFTSGR---RKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKT----KEL 337 (514)
T ss_pred ecCCCceEEEeccc---ceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhh----hhh
Confidence 444665 3333333 3689999999999999988877652111122232 444444444555565544442 446
Q ss_pred EEEEEecCCCCeeEEEEEeCCeEE-EEECCcEEEEEECCCCcEEEe
Q 047931 273 TRVFIHQDPNNVWPLCLWKNSTKL-LVINRKNLLVCDCNNEGSEDV 317 (339)
Q Consensus 273 ~~~~~i~~~~~~~~~~~~~~~~i~-~~~~~~~~~~yd~~t~~~~~v 317 (339)
..-..|.-. +.-+++..+++.+ ..+.++.++.+|++++...+.
T Consensus 338 i~s~KieG~--v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~r 381 (514)
T KOG2055|consen 338 ITSFKIEGV--VSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHR 381 (514)
T ss_pred hheeeeccE--EeeEEEecCCcEEEEEcCCceEEEEecCCcceEEE
Confidence 555555432 4455666677544 455566899999999975544
No 48
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=91.84 E-value=4.7 Score=33.80 Aligned_cols=115 Identities=10% Similarity=0.093 Sum_probs=66.4
Q ss_pred EECCeEEEEEecCCCCeEEEEEECCCceeeeecCCCCC---CCCceeEEEEE--CCeEEEEEe-------CCCeEEEEEE
Q 047931 196 LTNGALHWRLQKHGGDFVLAAFDLVEERFKEFPLPDAS---TSFRFFGTGVL--GDCLCLQFF-------KGKMKEHWIM 263 (339)
Q Consensus 196 ~~~G~lyw~~~~~~~~~~il~fD~~~~~~~~i~lP~~~---~~~~~~~l~~~--~G~L~~v~~-------~~~~l~iW~l 263 (339)
.+||-+ .+.... .+...|+.|++++.+|.|+.. .......++-. .+.--++.. .....+|+.+
T Consensus 3 sCnGLl-c~~~~~----~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~~~~~~~Vys~ 77 (230)
T TIGR01640 3 PCDGLI-CFSYGK----RLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNRNQSEHQVYTL 77 (230)
T ss_pred ccceEE-EEecCC----cEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCCCCCccEEEEEe
Confidence 478888 333333 799999999999999766542 11111222221 222222222 1246677777
Q ss_pred cccCCCCCeEEEEEecCC-CCeeEEEEEeCCeEEEEECCc------EEEEEECCCCcEEE-eEEe
Q 047931 264 KEYGVKESWTRVFIHQDP-NNVWPLCLWKNSTKLLVINRK------NLLVCDCNNEGSED-VAVA 320 (339)
Q Consensus 264 ~~~~~~~~W~~~~~i~~~-~~~~~~~~~~~~~i~~~~~~~------~~~~yd~~t~~~~~-v~~~ 320 (339)
+. ++|..+...+.. ..... ++.-+|.+.+..... .++.||+++++++. +..+
T Consensus 78 ~~----~~Wr~~~~~~~~~~~~~~-~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~~P 137 (230)
T TIGR01640 78 GS----NSWRTIECSPPHHPLKSR-GVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIPLP 137 (230)
T ss_pred CC----CCccccccCCCCccccCC-eEEECCEEEEEEEECCCCCcEEEEEEEcccceEeeeeecC
Confidence 64 479887532221 11222 555578777665321 59999999999995 6554
No 49
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=91.81 E-value=6.3 Score=33.44 Aligned_cols=149 Identities=15% Similarity=0.155 Sum_probs=83.7
Q ss_pred CcEEEEEEeCCCceEEecccCCccCccCCCceEECCeEEEEEecCCCCeEEEEEECCC----ceeeeecCCCCCCC-Cce
Q 047931 164 NMSVAIFSLRMNSWRRVLASGYTRPLINVPGTLTNGALHWRLQKHGGDFVLAAFDLVE----ERFKEFPLPDASTS-FRF 238 (339)
Q Consensus 164 ~~~~~vyss~~~~W~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~il~fD~~~----~~~~~i~lP~~~~~-~~~ 238 (339)
.....+|+..+++++.+...... .+....+.-||.+.-.....+....+-.|+..+ ..|... |..... ++.
T Consensus 45 ~a~s~~yD~~tn~~rpl~v~td~--FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~--~~~m~~~RWY 120 (243)
T PF07250_consen 45 PAHSVEYDPNTNTFRPLTVQTDT--FCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTES--PNDMQSGRWY 120 (243)
T ss_pred eEEEEEEecCCCcEEeccCCCCC--cccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceEC--cccccCCCcc
Confidence 44567899999999988533222 233345667887775554432234566677654 344432 222221 244
Q ss_pred eEEEEE-CCeEEEEEe-CCCeEEEEEEcccC-CCCCeEEEEEec--CCCCee-EEEEEeCCeEEEEECCcEEEEEECCCC
Q 047931 239 FGTGVL-GDCLCLQFF-KGKMKEHWIMKEYG-VKESWTRVFIHQ--DPNNVW-PLCLWKNSTKLLVINRKNLLVCDCNNE 312 (339)
Q Consensus 239 ~~l~~~-~G~L~~v~~-~~~~l~iW~l~~~~-~~~~W~~~~~i~--~~~~~~-~~~~~~~~~i~~~~~~~~~~~yd~~t~ 312 (339)
+....+ ||++.++.. .....+.|--+... ....|....... .+.... -+.+.++|++++..+.. -..||.+++
T Consensus 121 pT~~~L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~-s~i~d~~~n 199 (243)
T PF07250_consen 121 PTATTLPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG-SIIYDYKTN 199 (243)
T ss_pred ccceECCCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCC-cEEEeCCCC
Confidence 455555 999999988 55555555432211 111222111111 111233 44566799999888764 777899999
Q ss_pred cE-EEe
Q 047931 313 GS-EDV 317 (339)
Q Consensus 313 ~~-~~v 317 (339)
++ +.+
T Consensus 200 ~v~~~l 205 (243)
T PF07250_consen 200 TVVRTL 205 (243)
T ss_pred eEEeeC
Confidence 76 554
No 50
>PF13964 Kelch_6: Kelch motif
Probab=91.24 E-value=0.37 Score=29.50 Aligned_cols=23 Identities=17% Similarity=0.247 Sum_probs=20.3
Q ss_pred CCEEEEEcccccceeecCCCCCC
Q 047931 111 PKIFFVLNPLTRESKRIPDVPFE 133 (339)
Q Consensus 111 ~~~~~V~NP~T~~~~~LP~~~~~ 133 (339)
.+.+.++||.|++|..+|+++.+
T Consensus 27 ~~~v~~yd~~t~~W~~~~~mp~p 49 (50)
T PF13964_consen 27 SNDVERYDPETNTWEQLPPMPTP 49 (50)
T ss_pred cccEEEEcCCCCcEEECCCCCCC
Confidence 46899999999999999998854
No 51
>smart00612 Kelch Kelch domain.
Probab=90.15 E-value=0.36 Score=28.69 Aligned_cols=24 Identities=21% Similarity=0.347 Sum_probs=19.8
Q ss_pred CcEEEEEEeCCCceEEecccCCcc
Q 047931 164 NMSVAIFSLRMNSWRRVLASGYTR 187 (339)
Q Consensus 164 ~~~~~vyss~~~~W~~~~~~~~~~ 187 (339)
...+++|+.+++.|+..+.++...
T Consensus 14 ~~~v~~yd~~~~~W~~~~~~~~~r 37 (47)
T smart00612 14 LKSVEVYDPETNKWTPLPSMPTPR 37 (47)
T ss_pred eeeEEEECCCCCeEccCCCCCCcc
Confidence 457899999999999998777653
No 52
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=89.95 E-value=15 Score=33.59 Aligned_cols=107 Identities=14% Similarity=0.045 Sum_probs=59.3
Q ss_pred CCceEECCeEEEEEecCCCCeEEEEEECCCce--eeeecCCCCCCCCceeEEEEECCeEEEEEeCCCeEEEEEEcccCCC
Q 047931 192 VPGTLTNGALHWRLQKHGGDFVLAAFDLVEER--FKEFPLPDASTSFRFFGTGVLGDCLCLQFFKGKMKEHWIMKEYGVK 269 (339)
Q Consensus 192 ~~~v~~~G~lyw~~~~~~~~~~il~fD~~~~~--~~~i~lP~~~~~~~~~~l~~~~G~L~~v~~~~~~l~iW~l~~~~~~ 269 (339)
..++..+|.+|.....+ .+.++|..+.+ |+. +++.. ..+...+|.|++...+. . +..++-....
T Consensus 250 ~sP~v~~~~vy~~~~~g----~l~ald~~tG~~~W~~-~~~~~------~~~~~~~~~vy~~~~~g-~--l~ald~~tG~ 315 (394)
T PRK11138 250 TTPVVVGGVVYALAYNG----NLVALDLRSGQIVWKR-EYGSV------NDFAVDGGRIYLVDQND-R--VYALDTRGGV 315 (394)
T ss_pred CCcEEECCEEEEEEcCC----eEEEEECCCCCEEEee-cCCCc------cCcEEECCEEEEEcCCC-e--EEEEECCCCc
Confidence 45788899999877665 89999998754 543 22211 11234566666654432 2 2222221122
Q ss_pred CCeEEEEEecCCCCeeEEEEEeCCeEEEEECCcEEEEEECCCCcEE
Q 047931 270 ESWTRVFIHQDPNNVWPLCLWKNSTKLLVINRKNLLVCDCNNEGSE 315 (339)
Q Consensus 270 ~~W~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~yd~~t~~~~ 315 (339)
..|.... ........|.. .+|.+++...++.++.+|.+|++..
T Consensus 316 ~~W~~~~-~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~ 358 (394)
T PRK11138 316 ELWSQSD-LLHRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFV 358 (394)
T ss_pred EEEcccc-cCCCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEE
Confidence 3454311 11110022332 2566777766777999999999855
No 53
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=89.64 E-value=16 Score=33.42 Aligned_cols=189 Identities=12% Similarity=0.058 Sum_probs=95.4
Q ss_pred eCceEEEccCCCEEEEEcccccceeecCCCCCCCCCCCCCCeeEEeeeCCceEEEEEeeEeCCCcEEEEEEeCCC--ceE
Q 047931 101 CNGLVCTTPKPKIFFVLNPLTRESKRIPDVPFEPFPRSSDDLYGFGCTAEDCKFIKVSFGLKPNMSVAIFSLRMN--SWR 178 (339)
Q Consensus 101 ~~GLl~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~~~~~ykvv~~~~~~~~~~~~~vyss~~~--~W~ 178 (339)
.+|.+.+......++.+|+.|++.+.--..+... ..... ..+.. |+... ..-.+..++..++ .|+
T Consensus 119 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~---~ssP~-----v~~~~-v~v~~----~~g~l~ald~~tG~~~W~ 185 (394)
T PRK11138 119 AGGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEA---LSRPV-----VSDGL-VLVHT----SNGMLQALNESDGAVKWT 185 (394)
T ss_pred ECCEEEEEcCCCEEEEEECCCCCCcccccCCCce---ecCCE-----EECCE-EEEEC----CCCEEEEEEccCCCEeee
Confidence 3566665555567888999998743211111110 00001 11121 22111 1335667777665 688
Q ss_pred EecccCCccCccCCCceEECCeEEEEEecCCCCeEEEEEECCCce--eee-ecCCCCCCC-----CceeEEEEECCeEEE
Q 047931 179 RVLASGYTRPLINVPGTLTNGALHWRLQKHGGDFVLAAFDLVEER--FKE-FPLPDASTS-----FRFFGTGVLGDCLCL 250 (339)
Q Consensus 179 ~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~il~fD~~~~~--~~~-i~lP~~~~~-----~~~~~l~~~~G~L~~ 250 (339)
.-...+.........++..+|.+|+-...+ .+.++|.++.+ |+. +..|..... .....-...+|.|++
T Consensus 186 ~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g----~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~ 261 (394)
T PRK11138 186 VNLDVPSLTLRGESAPATAFGGAIVGGDNG----RVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYA 261 (394)
T ss_pred ecCCCCcccccCCCCCEEECCEEEEEcCCC----EEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEE
Confidence 754322111112245677889988876665 78999998764 542 222321110 001112345777776
Q ss_pred EEeCCCeEEEEEEcccCCCCCeEEEEEecCCCCeeEEEEEeCCeEEEEECCcEEEEEECCCCcEE
Q 047931 251 QFFKGKMKEHWIMKEYGVKESWTRVFIHQDPNNVWPLCLWKNSTKLLVINRKNLLVCDCNNEGSE 315 (339)
Q Consensus 251 v~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~yd~~t~~~~ 315 (339)
...+. . +..++-...+..|.... ... ..+ .+ .++.+++...+++++.+|.++++..
T Consensus 262 ~~~~g-~--l~ald~~tG~~~W~~~~--~~~--~~~-~~-~~~~vy~~~~~g~l~ald~~tG~~~ 317 (394)
T PRK11138 262 LAYNG-N--LVALDLRSGQIVWKREY--GSV--NDF-AV-DGGRIYLVDQNDRVYALDTRGGVEL 317 (394)
T ss_pred EEcCC-e--EEEEECCCCCEEEeecC--CCc--cCc-EE-ECCEEEEEcCCCeEEEEECCCCcEE
Confidence 55432 2 33443222235676531 110 112 22 3556777777778999999988743
No 54
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=89.57 E-value=0.61 Score=28.31 Aligned_cols=36 Identities=8% Similarity=0.003 Sum_probs=22.2
Q ss_pred CCceEE-CCeEEEEEecC-C--CCeEEEEEECCCceeeee
Q 047931 192 VPGTLT-NGALHWRLQKH-G--GDFVLAAFDLVEERFKEF 227 (339)
Q Consensus 192 ~~~v~~-~G~lyw~~~~~-~--~~~~il~fD~~~~~~~~i 227 (339)
..++.+ ++.+|-++... . ....+..||+++++|+.+
T Consensus 5 h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~ 44 (49)
T PF13418_consen 5 HSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRL 44 (49)
T ss_dssp -EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE-
T ss_pred EEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEEC
Confidence 345666 58888887665 1 234688999999999998
No 55
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=89.40 E-value=11 Score=31.29 Aligned_cols=136 Identities=13% Similarity=0.080 Sum_probs=74.9
Q ss_pred EEEEEEeCCC--ceEEecccCCccCccCCCceEECCeEEEEEecCCCCeEEEEEECCCcee-eeecCCCCCCCCceeEEE
Q 047931 166 SVAIFSLRMN--SWRRVLASGYTRPLINVPGTLTNGALHWRLQKHGGDFVLAAFDLVEERF-KEFPLPDASTSFRFFGTG 242 (339)
Q Consensus 166 ~~~vyss~~~--~W~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~il~fD~~~~~~-~~i~lP~~~~~~~~~~l~ 242 (339)
.+..++..++ .|+.--..... ......+..+|.+|-....+ .+.++|..+.+. ....++..... . ..
T Consensus 4 ~l~~~d~~tG~~~W~~~~~~~~~--~~~~~~~~~~~~v~~~~~~~----~l~~~d~~tG~~~W~~~~~~~~~~--~--~~ 73 (238)
T PF13360_consen 4 TLSALDPRTGKELWSYDLGPGIG--GPVATAVPDGGRVYVASGDG----NLYALDAKTGKVLWRFDLPGPISG--A--PV 73 (238)
T ss_dssp EEEEEETTTTEEEEEEECSSSCS--SEEETEEEETTEEEEEETTS----EEEEEETTTSEEEEEEECSSCGGS--G--EE
T ss_pred EEEEEECCCCCEEEEEECCCCCC--CccceEEEeCCEEEEEcCCC----EEEEEECCCCCEEEEeeccccccc--e--ee
Confidence 4667777665 68874211111 00111345788888875554 999999876553 33344444321 1 35
Q ss_pred EECCeEEEEEeCCCeEEEEEEcccCCCCCeEE-EEEecC-CC-CeeEEEEEeCCeEEEEECCcEEEEEECCCCcEE
Q 047931 243 VLGDCLCLQFFKGKMKEHWIMKEYGVKESWTR-VFIHQD-PN-NVWPLCLWKNSTKLLVINRKNLLVCDCNNEGSE 315 (339)
Q Consensus 243 ~~~G~L~~v~~~~~~l~iW~l~~~~~~~~W~~-~~~i~~-~~-~~~~~~~~~~~~i~~~~~~~~~~~yd~~t~~~~ 315 (339)
..+|.+++...+. .++.++-...+..|.. ...-+. .. ......+. ++.+++...+..++.+|+++++..
T Consensus 74 ~~~~~v~v~~~~~---~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~l~~~d~~tG~~~ 145 (238)
T PF13360_consen 74 VDGGRVYVGTSDG---SLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVD-GDRLYVGTSSGKLVALDPKTGKLL 145 (238)
T ss_dssp EETTEEEEEETTS---EEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEE-TTEEEEEETCSEEEEEETTTTEEE
T ss_pred eccccccccccee---eeEecccCCcceeeeeccccccccccccccCceEe-cCEEEEEeccCcEEEEecCCCcEE
Confidence 6688887766433 5556652222467874 322222 11 11122222 445666665778999999999864
No 56
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=88.40 E-value=17 Score=32.69 Aligned_cols=101 Identities=14% Similarity=0.087 Sum_probs=58.3
Q ss_pred EEEEEECCCceeeeecCCCCCCCCceeEEEEECCeEEEEEe---C--CC-----eEEEEEEcc----cCCCCCeEEEEEe
Q 047931 213 VLAAFDLVEERFKEFPLPDASTSFRFFGTGVLGDCLCLQFF---K--GK-----MKEHWIMKE----YGVKESWTRVFIH 278 (339)
Q Consensus 213 ~il~fD~~~~~~~~i~lP~~~~~~~~~~l~~~~G~L~~v~~---~--~~-----~l~iW~l~~----~~~~~~W~~~~~i 278 (339)
..+.||.++...... |..............+|+||+... . .. .+++-.... ....+.|.=. .+
T Consensus 87 ~t~vyDt~t~av~~~--P~l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~~~~~~~~~~~~~~w~W~-~L 163 (342)
T PF07893_consen 87 RTLVYDTDTRAVATG--PRLHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALVYRPPPDDPSPEESWSWR-SL 163 (342)
T ss_pred CeEEEECCCCeEecc--CCCCCCCcceEEEEeCCeEEEeeccCccccccCccceeEEEeccccccccccCCCcceEE-cC
Confidence 589999999888744 332221122233344888999887 1 11 444433221 1122334322 24
Q ss_pred cC-CC----C-----eeEEEEEeCC-eEEEEECCc--EEEEEECCCCcEEEe
Q 047931 279 QD-PN----N-----VWPLCLWKNS-TKLLVINRK--NLLVCDCNNEGSEDV 317 (339)
Q Consensus 279 ~~-~~----~-----~~~~~~~~~~-~i~~~~~~~--~~~~yd~~t~~~~~v 317 (339)
++ +. . +.-.++. +| .|++..... .-+.||.++.+|+++
T Consensus 164 P~PPf~~~~~~~~~~i~sYavv-~g~~I~vS~~~~~~GTysfDt~~~~W~~~ 214 (342)
T PF07893_consen 164 PPPPFVRDRRYSDYRITSYAVV-DGRTIFVSVNGRRWGTYSFDTESHEWRKH 214 (342)
T ss_pred CCCCccccCCcccceEEEEEEe-cCCeEEEEecCCceEEEEEEcCCcceeec
Confidence 33 22 1 4556677 56 566656554 699999999999998
No 57
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=87.83 E-value=17 Score=31.35 Aligned_cols=110 Identities=13% Similarity=0.173 Sum_probs=63.7
Q ss_pred CCEEEEEcccccceeecCCCCCCCCCCCCCCeeEEeeeCCceEEEEEeeEeCCCcEEEEEEeCCCceEEecccCCccCcc
Q 047931 111 PKIFFVLNPLTRESKRIPDVPFEPFPRSSDDLYGFGCTAEDCKFIKVSFGLKPNMSVAIFSLRMNSWRRVLASGYTRPLI 190 (339)
Q Consensus 111 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~~~~~ykvv~~~~~~~~~~~~~vyss~~~~W~~~~~~~~~~~~~ 190 (339)
.+.+...||.++.-..+|++.... .. .-... ++.-.-+++. -...-.+..|+..+.+|.+-.-.... .
T Consensus 209 gnaiaridp~~~~aev~p~P~~~~---~g--sRriw--sdpig~~wit--twg~g~l~rfdPs~~sW~eypLPgs~---a 276 (353)
T COG4257 209 GNAIARIDPFAGHAEVVPQPNALK---AG--SRRIW--SDPIGRAWIT--TWGTGSLHRFDPSVTSWIEYPLPGSK---A 276 (353)
T ss_pred ccceEEcccccCCcceecCCCccc---cc--ccccc--cCccCcEEEe--ccCCceeeEeCcccccceeeeCCCCC---C
Confidence 345677899999888888776521 00 00000 1111112221 11256788899999899887322111 1
Q ss_pred CCCceEECC-eEEEEEecCCCCeEEEEEECCCceeeeecCCCCCC
Q 047931 191 NVPGTLTNG-ALHWRLQKHGGDFVLAAFDLVEERFKEFPLPDAST 234 (339)
Q Consensus 191 ~~~~v~~~G-~lyw~~~~~~~~~~il~fD~~~~~~~~i~lP~~~~ 234 (339)
...+++++. -.-|+..-. ...|..||.++++|+.+++|....
T Consensus 277 rpys~rVD~~grVW~sea~--agai~rfdpeta~ftv~p~pr~n~ 319 (353)
T COG4257 277 RPYSMRVDRHGRVWLSEAD--AGAIGRFDPETARFTVLPIPRPNS 319 (353)
T ss_pred CcceeeeccCCcEEeeccc--cCceeecCcccceEEEecCCCCCC
Confidence 122344442 344664443 358999999999999999987653
No 58
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=87.58 E-value=18 Score=32.88 Aligned_cols=139 Identities=10% Similarity=-0.016 Sum_probs=78.6
Q ss_pred CcEEEEEEeCCCceEEe-cccCCccCccCCC-ceEECCeEEEEEecCCCCeEEEEEECCCce--eeeecCC--CCCCCCc
Q 047931 164 NMSVAIFSLRMNSWRRV-LASGYTRPLINVP-GTLTNGALHWRLQKHGGDFVLAAFDLVEER--FKEFPLP--DASTSFR 237 (339)
Q Consensus 164 ~~~~~vyss~~~~W~~~-~~~~~~~~~~~~~-~v~~~G~lyw~~~~~~~~~~il~fD~~~~~--~~~i~lP--~~~~~~~ 237 (339)
.........++..|... ...... ....+ +++.+|++|.....+ .+.++|.++.+ |+.-..+ ...
T Consensus 34 ~~~~~~~~~g~~~W~~~~~~~~~~--~~~~~~~~~~dg~v~~~~~~G----~i~A~d~~~g~~~W~~~~~~~~~~~---- 103 (370)
T COG1520 34 LVAVANNTSGTLLWSVSLGSGGGG--IYAGPAPADGDGTVYVGTRDG----NIFALNPDTGLVKWSYPLLGAVAQL---- 103 (370)
T ss_pred ceEEEcccCcceeeeeecccCccc--eEeccccEeeCCeEEEecCCC----cEEEEeCCCCcEEecccCcCcceec----
Confidence 34455556667788643 211111 11223 599999999986665 89999999876 5543332 111
Q ss_pred eeEEEEECCeEEEEEeCCCeEEEEEEcccCCCCCeEEEEEecCCCCeeEEEEEeCCeEEEEECCcEEEEEECCCCcEEEe
Q 047931 238 FFGTGVLGDCLCLQFFKGKMKEHWIMKEYGVKESWTRVFIHQDPNNVWPLCLWKNSTKLLVINRKNLLVCDCNNEGSEDV 317 (339)
Q Consensus 238 ~~~l~~~~G~L~~v~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~yd~~t~~~~~v 317 (339)
.......+|+|++-.... .++.+++......|.....-.... ..+ .+..++.+++...+..++..|.+|++.+..
T Consensus 104 ~~~~~~~~G~i~~g~~~g---~~y~ld~~~G~~~W~~~~~~~~~~-~~~-~v~~~~~v~~~s~~g~~~al~~~tG~~~W~ 178 (370)
T COG1520 104 SGPILGSDGKIYVGSWDG---KLYALDASTGTLVWSRNVGGSPYY-ASP-PVVGDGTVYVGTDDGHLYALNADTGTLKWT 178 (370)
T ss_pred cCceEEeCCeEEEecccc---eEEEEECCCCcEEEEEecCCCeEE-ecC-cEEcCcEEEEecCCCeEEEEEccCCcEEEE
Confidence 112223388877655544 677887733346787653330000 111 122244555554566799999998886544
No 59
>smart00612 Kelch Kelch domain.
Probab=87.20 E-value=2.1 Score=25.22 Aligned_cols=21 Identities=10% Similarity=0.366 Sum_probs=16.4
Q ss_pred eEEEEEECCCceeeee-cCCCC
Q 047931 212 FVLAAFDLVEERFKEF-PLPDA 232 (339)
Q Consensus 212 ~~il~fD~~~~~~~~i-~lP~~ 232 (339)
..+..||+++++|+.+ ++|..
T Consensus 15 ~~v~~yd~~~~~W~~~~~~~~~ 36 (47)
T smart00612 15 KSVEVYDPETNKWTPLPSMPTP 36 (47)
T ss_pred eeEEEECCCCCeEccCCCCCCc
Confidence 4788999999999987 44443
No 60
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=87.01 E-value=17 Score=30.62 Aligned_cols=202 Identities=10% Similarity=-0.021 Sum_probs=107.4
Q ss_pred EEeeeCceEEEcc-CCCEEEEEcccccceeecCCCCCCCCCCCCCCeeEEeeeCCceEEEEEeeEeCCCcEEEEEEeCCC
Q 047931 97 IVGSCNGLVCTTP-KPKIFFVLNPLTRESKRIPDVPFEPFPRSSDDLYGFGCTAEDCKFIKVSFGLKPNMSVAIFSLRMN 175 (339)
Q Consensus 97 ~~~s~~GLl~~~~-~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~~~~~ykvv~~~~~~~~~~~~~vyss~~~ 175 (339)
+.+..+|-|.+.+ ...+++.++|.+++...+..+. ..|+.+...+=+++... .....+++..++
T Consensus 6 ~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~----------~~G~~~~~~~g~l~v~~-----~~~~~~~d~~~g 70 (246)
T PF08450_consen 6 VWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLPG----------PNGMAFDRPDGRLYVAD-----SGGIAVVDPDTG 70 (246)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTTTEEEEEESSS----------EEEEEEECTTSEEEEEE-----TTCEEEEETTTT
T ss_pred EEECCCCEEEEEEcCCCEEEEEECCCCeEEEEecCC----------CceEEEEccCCEEEEEE-----cCceEEEecCCC
Confidence 3344355555444 5678999999999876544333 22333321222233222 345677798999
Q ss_pred ceEEecccCCc---cCccCCCceEECCeEEEEEecC-C--CC--eEEEEEECCCceeeeecCCCCCCCCceeEEEEE-CC
Q 047931 176 SWRRVLASGYT---RPLINVPGTLTNGALHWRLQKH-G--GD--FVLAAFDLVEERFKEFPLPDASTSFRFFGTGVL-GD 246 (339)
Q Consensus 176 ~W~~~~~~~~~---~~~~~~~~v~~~G~lyw~~~~~-~--~~--~~il~fD~~~~~~~~i~lP~~~~~~~~~~l~~~-~G 246 (339)
.++.+...+.. ......-.+.-+|.+|.-.... . .. ..+..+|.. .+...+.- ... ..-.++.. +|
T Consensus 71 ~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~--~~~--~pNGi~~s~dg 145 (246)
T PF08450_consen 71 KVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD--GLG--FPNGIAFSPDG 145 (246)
T ss_dssp EEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE--EES--SEEEEEEETTS
T ss_pred cEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec--Ccc--cccceEECCcc
Confidence 99888554211 1111111345578877655443 1 12 679999999 55444321 111 11123333 56
Q ss_pred e-EEEEEeCCCeEEEEEEcccCCCCCeEEEEEe-cCC--CC-eeEEEEEeCCeEEEEE-CCcEEEEEECCCCcEEEeEEe
Q 047931 247 C-LCLQFFKGKMKEHWIMKEYGVKESWTRVFIH-QDP--NN-VWPLCLWKNSTKLLVI-NRKNLLVCDCNNEGSEDVAVA 320 (339)
Q Consensus 247 ~-L~~v~~~~~~l~iW~l~~~~~~~~W~~~~~i-~~~--~~-~~~~~~~~~~~i~~~~-~~~~~~~yd~~t~~~~~v~~~ 320 (339)
+ |++....... ||.++-......+.....+ ..+ .+ ..=+++..+|.|++.. ...++..||++.+.+..+.+.
T Consensus 146 ~~lyv~ds~~~~--i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~G~~~~~i~~p 223 (246)
T PF08450_consen 146 KTLYVADSFNGR--IWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPDGKLLREIELP 223 (246)
T ss_dssp SEEEEEETTTTE--EEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETTSCEEEEEE-S
T ss_pred hheeecccccce--eEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCCccEEEEEcCC
Confidence 4 6665556665 4555432222346655444 222 11 3345566678877754 456899999997778888776
No 61
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=86.26 E-value=0.15 Score=45.96 Aligned_cols=37 Identities=30% Similarity=0.574 Sum_probs=34.1
Q ss_pred CCcHHHHHHHHccCCcccceeeeeccccccccCCChH
Q 047931 3 TIPHEIIFEILLRLPVKSLCRFKCVSSSWLALISDPQ 39 (339)
Q Consensus 3 ~Lp~Dll~eIL~rLP~~~l~r~~~VcK~W~~li~sp~ 39 (339)
.||.+++..||+-|..+++.|++.+|+.|+.+..|..
T Consensus 74 ~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~ 110 (483)
T KOG4341|consen 74 SLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGS 110 (483)
T ss_pred cCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccc
Confidence 5999999999999999999999999999999877643
No 62
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=86.02 E-value=26 Score=31.73 Aligned_cols=138 Identities=12% Similarity=0.091 Sum_probs=70.7
Q ss_pred cEEEEEEeCCC--ceEEecccCCccCccCCCceEECCeEEEEEecCCCCeEEEEEECCCce--eee-ecCCCCCCC----
Q 047931 165 MSVAIFSLRMN--SWRRVLASGYTRPLINVPGTLTNGALHWRLQKHGGDFVLAAFDLVEER--FKE-FPLPDASTS---- 235 (339)
Q Consensus 165 ~~~~vyss~~~--~W~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~il~fD~~~~~--~~~-i~lP~~~~~---- 235 (339)
-.+..++..++ .|+.-...+.........++..+|.+|.-...+ .+.++|+++++ |+. +..|.....
T Consensus 155 g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~~~~~~g----~v~ald~~tG~~~W~~~~~~~~g~~~~~~~ 230 (377)
T TIGR03300 155 GRLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGVLVGFAGG----KLVALDLQTGQPLWEQRVALPKGRTELERL 230 (377)
T ss_pred CeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEEEEECCCC----EEEEEEccCCCEeeeeccccCCCCCchhhh
Confidence 34667776654 687543222110111244677888877654444 89999998764 432 222321110
Q ss_pred -CceeEEEEECCeEEEEEeCCCeEEEEEEcccCCCCCeEEEEEecCCCCeeEEEEEeCCeEEEEECCcEEEEEECCCCcE
Q 047931 236 -FRFFGTGVLGDCLCLQFFKGKMKEHWIMKEYGVKESWTRVFIHQDPNNVWPLCLWKNSTKLLVINRKNLLVCDCNNEGS 314 (339)
Q Consensus 236 -~~~~~l~~~~G~L~~v~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~yd~~t~~~ 314 (339)
.........+|.+++... ...+..+.++. | +..|.... .. . ..|. + .++.+++...++.++.+|.++++.
T Consensus 231 ~~~~~~p~~~~~~vy~~~~-~g~l~a~d~~t-G-~~~W~~~~--~~-~-~~p~-~-~~~~vyv~~~~G~l~~~d~~tG~~ 301 (377)
T TIGR03300 231 VDVDGDPVVDGGQVYAVSY-QGRVAALDLRS-G-RVLWKRDA--SS-Y-QGPA-V-DDNRLYVTDADGVVVALDRRSGSE 301 (377)
T ss_pred hccCCccEEECCEEEEEEc-CCEEEEEECCC-C-cEEEeecc--CC-c-cCce-E-eCCEEEEECCCCeEEEEECCCCcE
Confidence 001112234666665443 33444455442 2 35676531 11 1 1222 2 245677666667799999988864
Q ss_pred E
Q 047931 315 E 315 (339)
Q Consensus 315 ~ 315 (339)
.
T Consensus 302 ~ 302 (377)
T TIGR03300 302 L 302 (377)
T ss_pred E
Confidence 3
No 63
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=85.87 E-value=2.3 Score=25.75 Aligned_cols=32 Identities=6% Similarity=0.073 Sum_probs=23.5
Q ss_pred EEEeCCeEEEEECC---------cEEEEEECCCCcEEEeEE
Q 047931 288 CLWKNSTKLLVINR---------KNLLVCDCNNEGSEDVAV 319 (339)
Q Consensus 288 ~~~~~~~i~~~~~~---------~~~~~yd~~t~~~~~v~~ 319 (339)
++..+++|++..+. ..+..||+++++|+.+.-
T Consensus 7 ~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~ 47 (49)
T PF07646_consen 7 AVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSP 47 (49)
T ss_pred EEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCC
Confidence 34446777776654 149999999999999854
No 64
>KOG3545 consensus Olfactomedin and related extracellular matrix glycoproteins [Extracellular structures]
Probab=85.72 E-value=21 Score=30.22 Aligned_cols=135 Identities=13% Similarity=0.132 Sum_probs=81.2
Q ss_pred CceEEecccCCccCccCCCceEECCeEEEEEecCCCCeEEEEEECCCce-eeeecCCCCCC---------CCceeEEEEE
Q 047931 175 NSWRRVLASGYTRPLINVPGTLTNGALHWRLQKHGGDFVLAAFDLVEER-FKEFPLPDAST---------SFRFFGTGVL 244 (339)
Q Consensus 175 ~~W~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~il~fD~~~~~-~~~i~lP~~~~---------~~~~~~l~~~ 244 (339)
+.|...=.+|... .....|+.||++|...... ..|+.||++++. .....+|...- ....+-+++.
T Consensus 56 ~~~~~~~~lp~~~--~gTg~VVynGs~yynk~~t---~~ivky~l~~~~~~~~~~lp~a~y~~~~~y~~~g~sdiD~avD 130 (249)
T KOG3545|consen 56 GRKAEKYRLPYSW--DGTGHVVYNGSLYYNKAGT---RNIIKYDLETRTVAGSAALPYAGYHNPSPYYWGGHSDIDLAVD 130 (249)
T ss_pred cCcceEEeCCCCc--cccceEEEcceEEeeccCC---cceEEEEeecceeeeeeeccccccCCCcccccCCCccccceec
Confidence 5666665566653 3455699999999987554 689999999954 33446665431 1134567888
Q ss_pred CCeEEEEEe---CCCeEEEEEEccc--CCCCCeEEEEEecCC-CC-eeEEEEEeCCeEEEEEC----CcE-EEEEECCCC
Q 047931 245 GDCLCLQFF---KGKMKEHWIMKEY--GVKESWTRVFIHQDP-NN-VWPLCLWKNSTKLLVIN----RKN-LLVCDCNNE 312 (339)
Q Consensus 245 ~G~L~~v~~---~~~~l~iW~l~~~--~~~~~W~~~~~i~~~-~~-~~~~~~~~~~~i~~~~~----~~~-~~~yd~~t~ 312 (339)
+..|.++.. +...+.|-.|+.. .....|.- .++.+ .+ +-++| |.++.... ... -+.||..++
T Consensus 131 E~GLWviYat~~~~g~iv~skLdp~tl~~e~tW~T--~~~k~~~~~aF~iC----GvLY~v~S~~~~~~~i~yaydt~~~ 204 (249)
T KOG3545|consen 131 ENGLWVIYATPENAGTIVLSKLDPETLEVERTWNT--TLPKRSAGNAFMIC----GVLYVVHSYNCTHTQISYAYDTTTG 204 (249)
T ss_pred ccceeEEecccccCCcEEeeccCHHHhheeeeecc--ccCCCCcCceEEEe----eeeEEEeccccCCceEEEEEEcCCC
Confidence 888888887 4566777777752 12345642 22221 21 22222 22222221 122 379999999
Q ss_pred cEEEeEEe
Q 047931 313 GSEDVAVA 320 (339)
Q Consensus 313 ~~~~v~~~ 320 (339)
+-+.+.++
T Consensus 205 ~~~~~~ip 212 (249)
T KOG3545|consen 205 TQERIDLP 212 (249)
T ss_pred ceeccccc
Confidence 98877653
No 65
>PLN02772 guanylate kinase
Probab=84.57 E-value=7.9 Score=35.33 Aligned_cols=71 Identities=10% Similarity=0.048 Sum_probs=50.5
Q ss_pred CCceEECCeEEEEEecC--C-CCeEEEEEECCCceeeeec----CCCCCCCCceeEEEEE-CCeEEEEEe-CCCeEEEEE
Q 047931 192 VPGTLTNGALHWRLQKH--G-GDFVLAAFDLVEERFKEFP----LPDASTSFRFFGTGVL-GDCLCLQFF-KGKMKEHWI 262 (339)
Q Consensus 192 ~~~v~~~G~lyw~~~~~--~-~~~~il~fD~~~~~~~~i~----lP~~~~~~~~~~l~~~-~G~L~~v~~-~~~~l~iW~ 262 (339)
.++|.++.++|.++... + ....+-+||..+.+|..-. .|... .....+.+ +++|.++.. ....-+||.
T Consensus 28 ~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r---~GhSa~v~~~~rilv~~~~~~~~~~~w~ 104 (398)
T PLN02772 28 ETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPC---KGYSAVVLNKDRILVIKKGSAPDDSIWF 104 (398)
T ss_pred ceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCC---CcceEEEECCceEEEEeCCCCCccceEE
Confidence 45789999999998755 2 2458999999999998742 33332 22344444 889998887 455578999
Q ss_pred Ecc
Q 047931 263 MKE 265 (339)
Q Consensus 263 l~~ 265 (339)
|+-
T Consensus 105 l~~ 107 (398)
T PLN02772 105 LEV 107 (398)
T ss_pred EEc
Confidence 984
No 66
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=84.05 E-value=35 Score=31.43 Aligned_cols=161 Identities=11% Similarity=0.002 Sum_probs=85.2
Q ss_pred eCCceEEEEEeeEeCCC-cEEEEEEeCCC-----ceEEecccCCccCccCCCceEECCeEEEEEecCCCCeEEEEEECCC
Q 047931 148 TAEDCKFIKVSFGLKPN-MSVAIFSLRMN-----SWRRVLASGYTRPLINVPGTLTNGALHWRLQKHGGDFVLAAFDLVE 221 (339)
Q Consensus 148 ~~~~ykvv~~~~~~~~~-~~~~vyss~~~-----~W~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~il~fD~~~ 221 (339)
.++.|-++... .... ..+.+.+...+ .|+.+..-.... ....-..++.+|.++........|++.|+.+
T Consensus 236 ~d~~~l~i~~~--~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~---~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~ 310 (414)
T PF02897_consen 236 KDGRYLFISSS--SGTSESEVYLLDLDDGGSPDAKPKLLSPREDGV---EYYVDHHGDRLYILTNDDAPNGRLVAVDLAD 310 (414)
T ss_dssp TTSSEEEEEEE--SSSSEEEEEEEECCCTTTSS-SEEEEEESSSS----EEEEEEETTEEEEEE-TT-TT-EEEEEETTS
T ss_pred CcccEEEEEEE--ccccCCeEEEEeccccCCCcCCcEEEeCCCCce---EEEEEccCCEEEEeeCCCCCCcEEEEecccc
Confidence 44556555543 2223 55666666654 777773211111 0112345778888777655668999999997
Q ss_pred ce---eeeecCCCCCCCCceeEEEEECCeEEEEEeCCCeEEEEEEcccCCCCCeEEEEEecCCCCeeEEEEEe--CC-eE
Q 047931 222 ER---FKEFPLPDASTSFRFFGTGVLGDCLCLQFFKGKMKEHWIMKEYGVKESWTRVFIHQDPNNVWPLCLWK--NS-TK 295 (339)
Q Consensus 222 ~~---~~~i~lP~~~~~~~~~~l~~~~G~L~~v~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~--~~-~i 295 (339)
-. |..+-+|..... ....+...++.|.+....+..-.|.+++-. ..|.....-.+..| .+.++.. ++ ++
T Consensus 311 ~~~~~~~~~l~~~~~~~-~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~---~~~~~~~~~~p~~g-~v~~~~~~~~~~~~ 385 (414)
T PF02897_consen 311 PSPAEWWTVLIPEDEDV-SLEDVSLFKDYLVLSYRENGSSRLRVYDLD---DGKESREIPLPEAG-SVSGVSGDFDSDEL 385 (414)
T ss_dssp TSGGGEEEEEE--SSSE-EEEEEEEETTEEEEEEEETTEEEEEEEETT----TEEEEEEESSSSS-EEEEEES-TT-SEE
T ss_pred cccccceeEEcCCCCce-eEEEEEEECCEEEEEEEECCccEEEEEECC---CCcEEeeecCCcce-EEeccCCCCCCCEE
Confidence 65 554433333210 223445568888887775555455555431 23554332222333 2233332 23 56
Q ss_pred EEEECC----cEEEEEECCCCcEEEeE
Q 047931 296 LLVINR----KNLLVCDCNNEGSEDVA 318 (339)
Q Consensus 296 ~~~~~~----~~~~~yd~~t~~~~~v~ 318 (339)
.+...+ ..++.||+++++.+.+.
T Consensus 386 ~~~~ss~~~P~~~y~~d~~t~~~~~~k 412 (414)
T PF02897_consen 386 RFSYSSFTTPPTVYRYDLATGELTLLK 412 (414)
T ss_dssp EEEEEETTEEEEEEEEETTTTCEEEEE
T ss_pred EEEEeCCCCCCEEEEEECCCCCEEEEE
Confidence 665432 35999999999998874
No 67
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=84.05 E-value=31 Score=30.93 Aligned_cols=115 Identities=10% Similarity=0.009 Sum_probs=68.4
Q ss_pred CCeEEEEEecCCCCeEEEEEECCCce--e---eeecCCCCCCCCceeEEEEE-CCe-EEEEEeCCCeEEEEEEcccCCCC
Q 047931 198 NGALHWRLQKHGGDFVLAAFDLVEER--F---KEFPLPDASTSFRFFGTGVL-GDC-LCLQFFKGKMKEHWIMKEYGVKE 270 (339)
Q Consensus 198 ~G~lyw~~~~~~~~~~il~fD~~~~~--~---~~i~lP~~~~~~~~~~l~~~-~G~-L~~v~~~~~~l~iW~l~~~~~~~ 270 (339)
+|..-|+...+ ...|..|++.++. . ..+.+|...+ ...++.. +|+ +|++......+.++.++.. +.
T Consensus 154 dg~~v~v~dlG--~D~v~~~~~~~~~~~l~~~~~~~~~~G~G---PRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~--~g 226 (345)
T PF10282_consen 154 DGRFVYVPDLG--ADRVYVYDIDDDTGKLTPVDSIKVPPGSG---PRHLAFSPDGKYAYVVNELSNTVSVFDYDPS--DG 226 (345)
T ss_dssp TSSEEEEEETT--TTEEEEEEE-TTS-TEEEEEEEECSTTSS---EEEEEE-TTSSEEEEEETTTTEEEEEEEETT--TT
T ss_pred CCCEEEEEecC--CCEEEEEEEeCCCceEEEeeccccccCCC---CcEEEEcCCcCEEEEecCCCCcEEEEeeccc--CC
Confidence 47766776665 3467777766554 4 3346666553 2233333 555 5555558888999988832 24
Q ss_pred CeEEEEEecC---CC----CeeEEEEEeCCeEEEEEC--CcEEEEEEC--CCCcEEEeEE
Q 047931 271 SWTRVFIHQD---PN----NVWPLCLWKNSTKLLVIN--RKNLLVCDC--NNEGSEDVAV 319 (339)
Q Consensus 271 ~W~~~~~i~~---~~----~~~~~~~~~~~~i~~~~~--~~~~~~yd~--~t~~~~~v~~ 319 (339)
.+..+.++.. .. ...-+++.++|+.++..+ ...+..|++ ++++++.+..
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~ 286 (345)
T PF10282_consen 227 SLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQT 286 (345)
T ss_dssp EEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEE
T ss_pred ceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEE
Confidence 6777766653 11 245566778888777654 335777776 6678887754
No 68
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=84.00 E-value=3.3 Score=24.95 Aligned_cols=28 Identities=7% Similarity=0.106 Sum_probs=17.1
Q ss_pred EeCCeEEEEEC---C----cEEEEEECCCCcEEEe
Q 047931 290 WKNSTKLLVIN---R----KNLLVCDCNNEGSEDV 317 (339)
Q Consensus 290 ~~~~~i~~~~~---~----~~~~~yd~~t~~~~~v 317 (339)
..++.+++..+ + ..++.||+++++|+++
T Consensus 10 ~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~ 44 (49)
T PF13418_consen 10 IGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRL 44 (49)
T ss_dssp E-TTEEEEE--EEE-TEE---EEEEETTTTEEEE-
T ss_pred EeCCeEEEECCCCCCCcccCCEEEEECCCCEEEEC
Confidence 34556666543 1 1499999999999988
No 69
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=83.99 E-value=29 Score=30.44 Aligned_cols=107 Identities=11% Similarity=0.031 Sum_probs=55.8
Q ss_pred CceEECCeEEEEEecCCCCeEEEEEECCCcee-eeecCCCCCCCCceeEEEEECCeE---EEEEe-CCCeEEEEEEcccC
Q 047931 193 PGTLTNGALHWRLQKHGGDFVLAAFDLVEERF-KEFPLPDASTSFRFFGTGVLGDCL---CLQFF-KGKMKEHWIMKEYG 267 (339)
Q Consensus 193 ~~v~~~G~lyw~~~~~~~~~~il~fD~~~~~~-~~i~lP~~~~~~~~~~l~~~~G~L---~~v~~-~~~~l~iW~l~~~~ 267 (339)
.+|.++|-.-.-+. .+..|-.||+.+..- ..+-.|... +.-....+.+ .++.. ++..+.||..+.
T Consensus 47 tavAVs~~~~aSGs---sDetI~IYDm~k~~qlg~ll~Hags-----itaL~F~~~~S~shLlS~sdDG~i~iw~~~~-- 116 (362)
T KOG0294|consen 47 TALAVSGPYVASGS---SDETIHIYDMRKRKQLGILLSHAGS-----ITALKFYPPLSKSHLLSGSDDGHIIIWRVGS-- 116 (362)
T ss_pred eEEEecceeEeccC---CCCcEEEEeccchhhhcceeccccc-----eEEEEecCCcchhheeeecCCCcEEEEEcCC--
Confidence 45666665333222 247899999887643 333333221 1111112222 34444 778889998774
Q ss_pred CCCCeEEEEEecCCCC-eeEEEEEeCCeEEEEE-CCcEEEEEECCCCc
Q 047931 268 VKESWTRVFIHQDPNN-VWPLCLWKNSTKLLVI-NRKNLLVCDCNNEG 313 (339)
Q Consensus 268 ~~~~W~~~~~i~~~~~-~~~~~~~~~~~i~~~~-~~~~~~~yd~~t~~ 313 (339)
|..+.++...-+ +.-+++++.|++-+.. +++.+-.||+-+++
T Consensus 117 ----W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr 160 (362)
T KOG0294|consen 117 ----WELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGR 160 (362)
T ss_pred ----eEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCc
Confidence 988888865211 3445555555554433 23334455544443
No 70
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=83.57 E-value=34 Score=30.99 Aligned_cols=111 Identities=13% Similarity=-0.008 Sum_probs=60.3
Q ss_pred CCceEECCeEEEEEecCCCCeEEEEEECCCce--eeeecCCCCCCCCceeEEEEECCeEEEEEeCCCeEEEEEEcccCCC
Q 047931 192 VPGTLTNGALHWRLQKHGGDFVLAAFDLVEER--FKEFPLPDASTSFRFFGTGVLGDCLCLQFFKGKMKEHWIMKEYGVK 269 (339)
Q Consensus 192 ~~~v~~~G~lyw~~~~~~~~~~il~fD~~~~~--~~~i~lP~~~~~~~~~~l~~~~G~L~~v~~~~~~l~iW~l~~~~~~ 269 (339)
..++..+|.+|.....+ .+.++|.++.+ |+. +.+.. ...+..+|.+++.. .+..+..+..++ .+
T Consensus 235 ~~p~~~~~~vy~~~~~g----~l~a~d~~tG~~~W~~-~~~~~------~~p~~~~~~vyv~~-~~G~l~~~d~~t--G~ 300 (377)
T TIGR03300 235 GDPVVDGGQVYAVSYQG----RVAALDLRSGRVLWKR-DASSY------QGPAVDDNRLYVTD-ADGVVVALDRRS--GS 300 (377)
T ss_pred CccEEECCEEEEEEcCC----EEEEEECCCCcEEEee-ccCCc------cCceEeCCEEEEEC-CCCeEEEEECCC--Cc
Confidence 34677899999887765 89999998754 432 22111 12234466665543 233343333332 12
Q ss_pred CCeEEEEEecCCCCeeEEEEEeCCeEEEEECCcEEEEEECCCCcEE-EeEE
Q 047931 270 ESWTRVFIHQDPNNVWPLCLWKNSTKLLVINRKNLLVCDCNNEGSE-DVAV 319 (339)
Q Consensus 270 ~~W~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~yd~~t~~~~-~v~~ 319 (339)
..|.... +....-..|.. .++.+++...++.++.+|.++++.. ++.+
T Consensus 301 ~~W~~~~-~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~ 348 (377)
T TIGR03300 301 ELWKNDE-LKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARLKT 348 (377)
T ss_pred EEEcccc-ccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEc
Confidence 3465321 11111022322 2456776666778999999988865 3433
No 71
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=83.47 E-value=26 Score=29.58 Aligned_cols=109 Identities=11% Similarity=-0.000 Sum_probs=66.5
Q ss_pred CeEEEEEecCCCCeEEEEEECCCceeeee-cCCCCCCCCceeEEE--EECCeEEEEEeCCCeEEEEEEcccCCCCCeEEE
Q 047931 199 GALHWRLQKHGGDFVLAAFDLVEERFKEF-PLPDASTSFRFFGTG--VLGDCLCLQFFKGKMKEHWIMKEYGVKESWTRV 275 (339)
Q Consensus 199 G~lyw~~~~~~~~~~il~fD~~~~~~~~i-~lP~~~~~~~~~~l~--~~~G~L~~v~~~~~~l~iW~l~~~~~~~~W~~~ 275 (339)
|++...+.+ ..+...|+++++++.. ....+ +-..++ +.+|++. ....+.+++||..+.-. =++.
T Consensus 127 nSi~~AgGD----~~~y~~dlE~G~i~r~~rGHtD----YvH~vv~R~~~~qil-sG~EDGtvRvWd~kt~k----~v~~ 193 (325)
T KOG0649|consen 127 NSILFAGGD----GVIYQVDLEDGRIQREYRGHTD----YVHSVVGRNANGQIL-SGAEDGTVRVWDTKTQK----HVSM 193 (325)
T ss_pred CcEEEecCC----eEEEEEEecCCEEEEEEcCCcc----eeeeeeecccCccee-ecCCCccEEEEeccccc----eeEE
Confidence 666666544 4899999999999865 43222 222222 2244432 23378899999998521 1111
Q ss_pred EEecC-------CCCeeEEEEEeCCeEEEEECCcEEEEEECCCCcEEE-eEEe
Q 047931 276 FIHQD-------PNNVWPLCLWKNSTKLLVINRKNLLVCDCNNEGSED-VAVA 320 (339)
Q Consensus 276 ~~i~~-------~~~~~~~~~~~~~~i~~~~~~~~~~~yd~~t~~~~~-v~~~ 320 (339)
...+. ..|-.+.|+..+.+-+++.+..++-.|++.+.+-.. +.|+
T Consensus 194 ie~yk~~~~lRp~~g~wigala~~edWlvCGgGp~lslwhLrsse~t~vfpip 246 (325)
T KOG0649|consen 194 IEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGGPKLSLWHLRSSESTCVFPIP 246 (325)
T ss_pred eccccChhhcCcccCceeEEEeccCceEEecCCCceeEEeccCCCceEEEecc
Confidence 11111 135667777767778887777789999998887543 3444
No 72
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=83.28 E-value=26 Score=29.49 Aligned_cols=106 Identities=12% Similarity=-0.020 Sum_probs=62.8
Q ss_pred CCeEEEEEecCCCCeEEEEEECCCceeeeecCCCCCCCCceeEEEEECCeEEEEEeCCCeEEEEEEcccCCCCCeEEEEE
Q 047931 198 NGALHWRLQKHGGDFVLAAFDLVEERFKEFPLPDASTSFRFFGTGVLGDCLCLQFFKGKMKEHWIMKEYGVKESWTRVFI 277 (339)
Q Consensus 198 ~G~lyw~~~~~~~~~~il~fD~~~~~~~~i~lP~~~~~~~~~~l~~~~G~L~~v~~~~~~l~iW~l~~~~~~~~W~~~~~ 277 (339)
+|.+||..... ..|..+|+.+++...+.+|... ...+..-+|+|++...... .+. + .. ..++.....
T Consensus 11 ~g~l~~~D~~~---~~i~~~~~~~~~~~~~~~~~~~----G~~~~~~~g~l~v~~~~~~--~~~--d-~~-~g~~~~~~~ 77 (246)
T PF08450_consen 11 DGRLYWVDIPG---GRIYRVDPDTGEVEVIDLPGPN----GMAFDRPDGRLYVADSGGI--AVV--D-PD-TGKVTVLAD 77 (246)
T ss_dssp TTEEEEEETTT---TEEEEEETTTTEEEEEESSSEE----EEEEECTTSEEEEEETTCE--EEE--E-TT-TTEEEEEEE
T ss_pred CCEEEEEEcCC---CEEEEEECCCCeEEEEecCCCc----eEEEEccCCEEEEEEcCce--EEE--e-cC-CCcEEEEee
Confidence 69999997654 5899999999999988887722 1122223677776654332 222 2 22 246777777
Q ss_pred ecC---CC-CeeEEEEEeCCeEEEEECC---------cEEEEEECCCCcEEEe
Q 047931 278 HQD---PN-NVWPLCLWKNSTKLLVINR---------KNLLVCDCNNEGSEDV 317 (339)
Q Consensus 278 i~~---~~-~~~~~~~~~~~~i~~~~~~---------~~~~~yd~~t~~~~~v 317 (339)
... +. ...=+++.++|.+++.... .+++.++.+ ++.+.+
T Consensus 78 ~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~ 129 (246)
T PF08450_consen 78 LPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVV 129 (246)
T ss_dssp EETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEE
T ss_pred ccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEE
Confidence 632 22 1223455667776664321 358888888 555544
No 73
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=81.84 E-value=41 Score=32.33 Aligned_cols=116 Identities=13% Similarity=0.074 Sum_probs=63.3
Q ss_pred CCceEECCeEEEEEecCCCCeEEEEEECCCc--eeeee-cCCCCCCC-----CceeEEEEECCeEEEEEeCCCeEEEEEE
Q 047931 192 VPGTLTNGALHWRLQKHGGDFVLAAFDLVEE--RFKEF-PLPDASTS-----FRFFGTGVLGDCLCLQFFKGKMKEHWIM 263 (339)
Q Consensus 192 ~~~v~~~G~lyw~~~~~~~~~~il~fD~~~~--~~~~i-~lP~~~~~-----~~~~~l~~~~G~L~~v~~~~~~l~iW~l 263 (339)
..++..+|.+|.....+ .|.++|.++. .|+.- ..|..... .....++..+|++++...+. .+..|
T Consensus 63 stPvv~~g~vyv~s~~g----~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~dg---~l~AL 135 (527)
T TIGR03075 63 SQPLVVDGVMYVTTSYS----RVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTLDA---RLVAL 135 (527)
T ss_pred cCCEEECCEEEEECCCC----cEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcCCC---EEEEE
Confidence 45788999999876654 7999998874 45542 33322110 01122345567776644333 24555
Q ss_pred cccCCCCCeEEEEE-ecC--CCCeeEEEEEeCCeEEEEEC------CcEEEEEECCCCcEEE
Q 047931 264 KEYGVKESWTRVFI-HQD--PNNVWPLCLWKNSTKLLVIN------RKNLLVCDCNNEGSED 316 (339)
Q Consensus 264 ~~~~~~~~W~~~~~-i~~--~~~~~~~~~~~~~~i~~~~~------~~~~~~yd~~t~~~~~ 316 (339)
+-...+..|..... ... .....|+.. ++.|++... +..++.||.+|++...
T Consensus 136 Da~TGk~~W~~~~~~~~~~~~~tssP~v~--~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW 195 (527)
T TIGR03075 136 DAKTGKVVWSKKNGDYKAGYTITAAPLVV--KGKVITGISGGEFGVRGYVTAYDAKTGKLVW 195 (527)
T ss_pred ECCCCCEEeecccccccccccccCCcEEE--CCEEEEeecccccCCCcEEEEEECCCCceeE
Confidence 53323456765321 111 111234433 455555432 3469999999999553
No 74
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=81.14 E-value=40 Score=30.03 Aligned_cols=130 Identities=10% Similarity=0.025 Sum_probs=78.4
Q ss_pred eEEEEEecCCCCeEEEEEECCC--ceeeee-cCCCCCCCCceeEEEEE-CCeEEEEE-eCCCeEEEEEEcccCCCCCeEE
Q 047931 200 ALHWRLQKHGGDFVLAAFDLVE--ERFKEF-PLPDASTSFRFFGTGVL-GDCLCLQF-FKGKMKEHWIMKEYGVKESWTR 274 (339)
Q Consensus 200 ~lyw~~~~~~~~~~il~fD~~~--~~~~~i-~lP~~~~~~~~~~l~~~-~G~L~~v~-~~~~~l~iW~l~~~~~~~~W~~ 274 (339)
.+|-+...+ ....|.+|.+.. ++.+.+ ..+.... ....+.+. +|++.++. .....+.|.-++++| .-|..
T Consensus 53 ~LY~v~~~~-~~ggvaay~iD~~~G~Lt~ln~~~~~g~--~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG--~l~~~ 127 (346)
T COG2706 53 HLYVVNEPG-EEGGVAAYRIDPDDGRLTFLNRQTLPGS--PPCYVSVDEDGRFVFVANYHSGSVSVYPLQADG--SLQPV 127 (346)
T ss_pred EEEEEEecC-CcCcEEEEEEcCCCCeEEEeeccccCCC--CCeEEEECCCCCEEEEEEccCceEEEEEcccCC--ccccc
Confidence 688877773 234666666554 677776 2222221 11345555 55444444 388899999998764 45666
Q ss_pred EEEecCC----C------CeeEEEEEeCCeEEEEEC--CcEEEEEECCCCcEEEeEEe--CCCCccceeEEecC
Q 047931 275 VFIHQDP----N------NVWPLCLWKNSTKLLVIN--RKNLLVCDCNNEGSEDVAVA--DVPNWNSACVYVES 334 (339)
Q Consensus 275 ~~~i~~~----~------~~~~~~~~~~~~i~~~~~--~~~~~~yd~~t~~~~~v~~~--~~~~~~~~~~y~~s 334 (339)
...+... - .+....+.+++++++..+ ..+++.|+++.++++....- ..+...+.+.|.++
T Consensus 128 v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn 201 (346)
T COG2706 128 VQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPN 201 (346)
T ss_pred eeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCC
Confidence 5444331 0 166777888888888765 44799999999998866321 12234445555443
No 75
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=81.14 E-value=28 Score=29.95 Aligned_cols=101 Identities=15% Similarity=0.136 Sum_probs=65.8
Q ss_pred eEEEEEECCCceeeeecCCCCCCCCceeEEEEE-CCeEEEEEeCCCeEEEEEEcccCCCCCeEEEEEecCCCCeeEEEEE
Q 047931 212 FVLAAFDLVEERFKEFPLPDASTSFRFFGTGVL-GDCLCLQFFKGKMKEHWIMKEYGVKESWTRVFIHQDPNNVWPLCLW 290 (339)
Q Consensus 212 ~~il~fD~~~~~~~~i~lP~~~~~~~~~~l~~~-~G~L~~v~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~ 290 (339)
..+=+-|+++-+....- |... ...-.+.++ ||.||.....+..+-+|.|++. +. .++++....+..++|.
T Consensus 172 ktvKvWnl~~~~l~~~~-~gh~--~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~---k~---lysl~a~~~v~sl~fs 242 (315)
T KOG0279|consen 172 KTVKVWNLRNCQLRTTF-IGHS--GYVNTVTVSPDGSLCASGGKDGEAMLWDLNEG---KN---LYSLEAFDIVNSLCFS 242 (315)
T ss_pred ceEEEEccCCcchhhcc-cccc--ccEEEEEECCCCCEEecCCCCceEEEEEccCC---ce---eEeccCCCeEeeEEec
Confidence 35666777765554321 1111 122244444 9999998888889999999973 21 4566543226788888
Q ss_pred eCCeEEEEECCcEEEEEECCCCc-EEEeEEeC
Q 047931 291 KNSTKLLVINRKNLLVCDCNNEG-SEDVAVAD 321 (339)
Q Consensus 291 ~~~~i~~~~~~~~~~~yd~~t~~-~~~v~~~~ 321 (339)
++.-.+....+..+-.||++++. +..+..++
T Consensus 243 pnrywL~~at~~sIkIwdl~~~~~v~~l~~d~ 274 (315)
T KOG0279|consen 243 PNRYWLCAATATSIKIWDLESKAVVEELKLDG 274 (315)
T ss_pred CCceeEeeccCCceEEEeccchhhhhhccccc
Confidence 88766666666779999999988 44555443
No 76
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=81.03 E-value=40 Score=30.12 Aligned_cols=115 Identities=14% Similarity=0.051 Sum_probs=66.0
Q ss_pred ceEEC--CeEEEEEecCCCCeEEEEEECCCceeeee---cCCCCC--CCCce---eEEEE---ECCeEEEEEe-------
Q 047931 194 GTLTN--GALHWRLQKHGGDFVLAAFDLVEERFKEF---PLPDAS--TSFRF---FGTGV---LGDCLCLQFF------- 253 (339)
Q Consensus 194 ~v~~~--G~lyw~~~~~~~~~~il~fD~~~~~~~~i---~lP~~~--~~~~~---~~l~~---~~G~L~~v~~------- 253 (339)
+++.+ |.+||++..+ .|...|++.+..... .+-... ...+. .++.. -.|+||+..+
T Consensus 189 ~~~~~~~~~~~F~Sy~G----~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsH 264 (342)
T PF06433_consen 189 PAYSRDGGRLYFVSYEG----NVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSH 264 (342)
T ss_dssp -EEETTTTEEEEEBTTS----EEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-T
T ss_pred cceECCCCeEEEEecCC----EEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCc
Confidence 45443 6799988887 899999987765443 111111 01111 12222 3789998776
Q ss_pred CCCeEEEEEEcccCCCCCeEEEEEecCCCCeeEEEEEeCCe-EEEE-EC-CcEEEEEECCCCcEEE
Q 047931 254 KGKMKEHWIMKEYGVKESWTRVFIHQDPNNVWPLCLWKNST-KLLV-IN-RKNLLVCDCNNEGSED 316 (339)
Q Consensus 254 ~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~-i~~~-~~-~~~~~~yd~~t~~~~~ 316 (339)
....=+||+++- .+=.++.+|+..-....+++..+++ .++. .. +..+++||..|++..+
T Consensus 265 KdpgteVWv~D~----~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~ 326 (342)
T PF06433_consen 265 KDPGTEVWVYDL----KTHKRVARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVR 326 (342)
T ss_dssp TS-EEEEEEEET----TTTEEEEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEE
T ss_pred cCCceEEEEEEC----CCCeEEEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEe
Confidence 244578999985 2234456665421134677777665 4443 33 4579999999997543
No 77
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=80.90 E-value=40 Score=29.88 Aligned_cols=137 Identities=7% Similarity=0.050 Sum_probs=71.6
Q ss_pred CcEEEEEEeCC-CceEEecccCCccCccCCCceEE--CCe-EEEEEecCCCCeEEEEEECC-Cceeeeec-CCCCCCCCc
Q 047931 164 NMSVAIFSLRM-NSWRRVLASGYTRPLINVPGTLT--NGA-LHWRLQKHGGDFVLAAFDLV-EERFKEFP-LPDASTSFR 237 (339)
Q Consensus 164 ~~~~~vyss~~-~~W~~~~~~~~~~~~~~~~~v~~--~G~-lyw~~~~~~~~~~il~fD~~-~~~~~~i~-lP~~~~~~~ 237 (339)
...+.+|+..+ +.++.+...+... ....+.+ +|. +|..... ...|.+|++. +.++..+. .|... .
T Consensus 11 ~~~I~~~~~~~~g~l~~~~~~~~~~---~~~~l~~spd~~~lyv~~~~---~~~i~~~~~~~~g~l~~~~~~~~~~---~ 81 (330)
T PRK11028 11 SQQIHVWNLNHEGALTLLQVVDVPG---QVQPMVISPDKRHLYVGVRP---EFRVLSYRIADDGALTFAAESPLPG---S 81 (330)
T ss_pred CCCEEEEEECCCCceeeeeEEecCC---CCccEEECCCCCEEEEEECC---CCcEEEEEECCCCceEEeeeecCCC---C
Confidence 45677788764 6777665443221 1122333 454 4544332 2467778875 44554432 22111 1
Q ss_pred eeEEEEE-CCeEEEEEe-CCCeEEEEEEcccCCCCCeEEEEEecCCCCeeEEEEEeCCeEEEEEC--CcEEEEEECCC
Q 047931 238 FFGTGVL-GDCLCLQFF-KGKMKEHWIMKEYGVKESWTRVFIHQDPNNVWPLCLWKNSTKLLVIN--RKNLLVCDCNN 311 (339)
Q Consensus 238 ~~~l~~~-~G~L~~v~~-~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~i~~~~~--~~~~~~yd~~t 311 (339)
...++.. +|+..++.. ....+.+|.+++.+. .......+....+..-+++.++|+.++..+ +..+.+||+++
T Consensus 82 p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~--~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~ 157 (330)
T PRK11028 82 PTHISTDHQGRFLFSASYNANCVSVSPLDKDGI--PVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSD 157 (330)
T ss_pred ceEEEECCCCCEEEEEEcCCCeEEEEEECCCCC--CCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECC
Confidence 1234444 666444444 778899999975432 122223332211234456677776665443 34699999876
No 78
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=77.24 E-value=80 Score=31.94 Aligned_cols=32 Identities=13% Similarity=0.088 Sum_probs=25.1
Q ss_pred CCCceEECCeEEEEEecCCCCeEEEEEECCCc--eeee
Q 047931 191 NVPGTLTNGALHWRLQKHGGDFVLAAFDLVEE--RFKE 226 (339)
Q Consensus 191 ~~~~v~~~G~lyw~~~~~~~~~~il~fD~~~~--~~~~ 226 (339)
...++.++|.+|.-+... .+.++|.+|. .|+.
T Consensus 187 e~TPlvvgg~lYv~t~~~----~V~ALDa~TGk~lW~~ 220 (764)
T TIGR03074 187 QATPLKVGDTLYLCTPHN----KVIALDAATGKEKWKF 220 (764)
T ss_pred ccCCEEECCEEEEECCCC----eEEEEECCCCcEEEEE
Confidence 456799999999976665 8999998864 4664
No 79
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=77.20 E-value=12 Score=21.98 Aligned_cols=40 Identities=8% Similarity=-0.014 Sum_probs=28.5
Q ss_pred eeEEEEECCeEEEEEe--C--CCeEEEEEEcccCCCCCeEEEEEec
Q 047931 238 FFGTGVLGDCLCLQFF--K--GKMKEHWIMKEYGVKESWTRVFIHQ 279 (339)
Q Consensus 238 ~~~l~~~~G~L~~v~~--~--~~~l~iW~l~~~~~~~~W~~~~~i~ 279 (339)
....++.+++|+++.+ . ...-.+|.++-. ..+|..+-.++
T Consensus 4 ~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~--~~~W~~~~~mp 47 (47)
T PF01344_consen 4 GHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPE--TNTWEELPPMP 47 (47)
T ss_dssp SEEEEEETTEEEEEEEBESTSSBEEEEEEEETT--TTEEEEEEEES
T ss_pred cCEEEEECCEEEEEeeecccCceeeeEEEEeCC--CCEEEEcCCCC
Confidence 3567888999999999 2 334566666642 46899887663
No 80
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=75.93 E-value=94 Score=31.45 Aligned_cols=202 Identities=9% Similarity=-0.005 Sum_probs=99.3
Q ss_pred eeeCce--EEEccCCCEEEEE--cccccceeecCCCCCCCCCC-CCCCeeEEeeeCCceEEEEEeeEeCCCcEEEEEEeC
Q 047931 99 GSCNGL--VCTTPKPKIFFVL--NPLTRESKRIPDVPFEPFPR-SSDDLYGFGCTAEDCKFIKVSFGLKPNMSVAIFSLR 173 (339)
Q Consensus 99 ~s~~GL--l~~~~~~~~~~V~--NP~T~~~~~LP~~~~~~~~~-~~~~~~~~g~~~~~ykvv~~~~~~~~~~~~~vyss~ 173 (339)
++-+|+ +|+....+-+++| |+.++.|..+-....+.... ......+++..+. +-+.+.. ...+.+|...
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~-~f~~~s~-----~~tv~~y~fp 84 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSN-HFLTGSE-----QNTVLRYKFP 84 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeeccc-ceEEeec-----cceEEEeeCC
Confidence 444554 4555555567777 77888887775532221111 1111334443222 3333322 4567778776
Q ss_pred CCceEEe-cccCCccCccCCCceEECCeEEEEEecCCCCeEEEEEECCCceeeeecCCCCCCCCceeEEE-EECCeEEEE
Q 047931 174 MNSWRRV-LASGYTRPLINVPGTLTNGALHWRLQKHGGDFVLAAFDLVEERFKEFPLPDASTSFRFFGTG-VLGDCLCLQ 251 (339)
Q Consensus 174 ~~~W~~~-~~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~il~fD~~~~~~~~i~lP~~~~~~~~~~l~-~~~G~L~~v 251 (339)
++.=..+ .-+..+ ...-.|..+|..--.+.++ ..|-..++.+..-...--+.... ...|. .-+|.+.++
T Consensus 85 s~~~~~iL~Rftlp---~r~~~v~g~g~~iaagsdD---~~vK~~~~~D~s~~~~lrgh~ap---Vl~l~~~p~~~fLAv 155 (933)
T KOG1274|consen 85 SGEEDTILARFTLP---IRDLAVSGSGKMIAAGSDD---TAVKLLNLDDSSQEKVLRGHDAP---VLQLSYDPKGNFLAV 155 (933)
T ss_pred CCCccceeeeeecc---ceEEEEecCCcEEEeecCc---eeEEEEeccccchheeecccCCc---eeeeeEcCCCCEEEE
Confidence 6544433 211111 1121344444444444443 55666665554332221111111 11111 126666666
Q ss_pred EeCCCeEEEEEEcccCCCCCeEEEEEec-C---CCCeeEEEEEeC-CeEEEEECCcEEEEEECCCCcEEE
Q 047931 252 FFKGKMKEHWIMKEYGVKESWTRVFIHQ-D---PNNVWPLCLWKN-STKLLVINRKNLLVCDCNNEGSED 316 (339)
Q Consensus 252 ~~~~~~l~iW~l~~~~~~~~W~~~~~i~-~---~~~~~~~~~~~~-~~i~~~~~~~~~~~yd~~t~~~~~ 316 (339)
..-+..+.||.+++......|..+..-. . .+ +.-.+.+++ |.+++...+..|.+|+.++.....
T Consensus 156 ss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i-~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f 224 (933)
T KOG1274|consen 156 SSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRI-CTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQF 224 (933)
T ss_pred EecCceEEEEEcccchhhhhcccCCccccccccce-eeeeeecCCCCeEEeeccCCeEEEEccCCceehe
Confidence 6667788899999744334454432111 1 12 445555665 567776666678888877766443
No 81
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=75.82 E-value=7.5 Score=22.25 Aligned_cols=26 Identities=15% Similarity=0.098 Sum_probs=19.0
Q ss_pred CCceEECCeEEEEEecCCCCeEEEEEECCC
Q 047931 192 VPGTLTNGALHWRLQKHGGDFVLAAFDLVE 221 (339)
Q Consensus 192 ~~~v~~~G~lyw~~~~~~~~~~il~fD~~~ 221 (339)
..+++.+|.+|....++ .+.+||.+|
T Consensus 15 ~~~~v~~g~vyv~~~dg----~l~ald~~t 40 (40)
T PF13570_consen 15 SSPAVAGGRVYVGTGDG----NLYALDAAT 40 (40)
T ss_dssp S--EECTSEEEEE-TTS----EEEEEETT-
T ss_pred cCCEEECCEEEEEcCCC----EEEEEeCCC
Confidence 34688899999988876 899999875
No 82
>PF12458 DUF3686: ATPase involved in DNA repair ; InterPro: IPR020958 This entry represents an N-terminal domain associated with ATPases and some uncharacterised proteins; it is approximately 450 amino acids in length and contains two conserved sequence motifs: DVF and SPNGED.
Probab=75.21 E-value=24 Score=32.32 Aligned_cols=131 Identities=15% Similarity=0.181 Sum_probs=70.6
Q ss_pred eCceEEEcc----CC-CEEEEEcccccceeecCCCCCCC--CCCCCCCeeEEee--eCCceEEEEEeeEeCCCcEEEEEE
Q 047931 101 CNGLVCTTP----KP-KIFFVLNPLTRESKRIPDVPFEP--FPRSSDDLYGFGC--TAEDCKFIKVSFGLKPNMSVAIFS 171 (339)
Q Consensus 101 ~~GLl~~~~----~~-~~~~V~NP~T~~~~~LP~~~~~~--~~~~~~~~~~~g~--~~~~ykvv~~~~~~~~~~~~~vys 171 (339)
-+.|+++.- .. -+++|+|..|++..++....... +|.-+.-.+.=|| .+++||.+-..
T Consensus 237 vG~LILLrI~PY~E~~~RylVfN~~t~~V~R~Daig~acv~LPedqGiIFpgGYyLqtGe~K~Fd~~------------- 303 (448)
T PF12458_consen 237 VGNLILLRIRPYREEEWRYLVFNTRTKKVVRLDAIGQACVRLPEDQGIIFPGGYYLQTGEYKTFDTD------------- 303 (448)
T ss_pred cCcEEEEEeccCCCcceeEEEEecccceEEEecchhhhhhcCCccCceEccCceEeccCCceeeccc-------------
Confidence 355677653 22 38999999999998887655331 2221111233344 56666655322
Q ss_pred eCCCceEEecccCCccCccCCCceEECC--eEEEEEecCCCCeEEEEEECCCceeeeecCCCCCCCCceeEEEEECCeEE
Q 047931 172 LRMNSWRRVLASGYTRPLINVPGTLTNG--ALHWRLQKHGGDFVLAAFDLVEERFKEFPLPDASTSFRFFGTGVLGDCLC 249 (339)
Q Consensus 172 s~~~~W~~~~~~~~~~~~~~~~~v~~~G--~lyw~~~~~~~~~~il~fD~~~~~~~~i~lP~~~~~~~~~~l~~~~G~L~ 249 (339)
.. ++.+.. .-.+=|| .+|..-...+....++.||+-..+.. -|-.+. ..-.--+|+|+
T Consensus 304 --~~------~l~F~r-----~vrSPNGEDvLYvF~~~~~g~~~Ll~YN~I~k~v~---tPi~ch----G~alf~DG~l~ 363 (448)
T PF12458_consen 304 --MD------GLEFER-----KVRSPNGEDVLYVFYAREEGRYLLLPYNLIRKEVA---TPIICH----GYALFEDGRLV 363 (448)
T ss_pred --CC------CceEEE-----EecCCCCceEEEEEEECCCCcEEEEechhhhhhhc---CCeecc----ceeEecCCEEE
Confidence 11 111110 0011122 56665555445678999998776554 333331 11123489999
Q ss_pred EEEeC------CCeEEEEEEc
Q 047931 250 LQFFK------GKMKEHWIMK 264 (339)
Q Consensus 250 ~v~~~------~~~l~iW~l~ 264 (339)
+.... ...++||.--
T Consensus 364 ~fra~~~EptrvHp~QiWqTP 384 (448)
T PF12458_consen 364 YFRAEGDEPTRVHPMQIWQTP 384 (448)
T ss_pred EEecCCCCcceeccceeecCC
Confidence 88872 3458889864
No 83
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=72.84 E-value=71 Score=28.65 Aligned_cols=168 Identities=10% Similarity=-0.023 Sum_probs=85.5
Q ss_pred eeEEee-eCCceEEEEEeeEeCCCcEEEEEEeCCCc--eEEecc--cCCccCccCCCce-EECCe-EEEEEecCCCCeEE
Q 047931 142 LYGFGC-TAEDCKFIKVSFGLKPNMSVAIFSLRMNS--WRRVLA--SGYTRPLINVPGT-LTNGA-LHWRLQKHGGDFVL 214 (339)
Q Consensus 142 ~~~~g~-~~~~ykvv~~~~~~~~~~~~~vyss~~~~--W~~~~~--~~~~~~~~~~~~v-~~~G~-lyw~~~~~~~~~~i 214 (339)
...+.+ .++.|-.+.- ...-.+.+|+...+. ...... ++... .++..+ .-+|. +|.+... .+...+
T Consensus 146 ~H~v~~~pdg~~v~v~d----lG~D~v~~~~~~~~~~~l~~~~~~~~~~G~--GPRh~~f~pdg~~~Yv~~e~-s~~v~v 218 (345)
T PF10282_consen 146 PHQVVFSPDGRFVYVPD----LGADRVYVYDIDDDTGKLTPVDSIKVPPGS--GPRHLAFSPDGKYAYVVNEL-SNTVSV 218 (345)
T ss_dssp EEEEEE-TTSSEEEEEE----TTTTEEEEEEE-TTS-TEEEEEEEECSTTS--SEEEEEE-TTSSEEEEEETT-TTEEEE
T ss_pred ceeEEECCCCCEEEEEe----cCCCEEEEEEEeCCCceEEEeeccccccCC--CCcEEEEcCCcCEEEEecCC-CCcEEE
Confidence 444555 4455554432 235678888887654 544322 22221 111112 22554 5555443 233444
Q ss_pred EEEECCCceeeee----cCCCCCCCC-ceeEEEEE-CCe-EEEEEeCCCeEEEEEEcccCCCCCeEEEEEecC-CCCeeE
Q 047931 215 AAFDLVEERFKEF----PLPDASTSF-RFFGTGVL-GDC-LCLQFFKGKMKEHWIMKEYGVKESWTRVFIHQD-PNNVWP 286 (339)
Q Consensus 215 l~fD~~~~~~~~i----~lP~~~~~~-~~~~l~~~-~G~-L~~v~~~~~~l~iW~l~~~~~~~~W~~~~~i~~-~~~~~~ 286 (339)
+.+|..+.++..+ .+|...... ....+... +|+ ||+.......|.++.+++.. ++-..+..++. ...-+-
T Consensus 219 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~--g~l~~~~~~~~~G~~Pr~ 296 (345)
T PF10282_consen 219 FDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPAT--GTLTLVQTVPTGGKFPRH 296 (345)
T ss_dssp EEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTT--TTEEEEEEEEESSSSEEE
T ss_pred EeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCC--CceEEEEEEeCCCCCccE
Confidence 4444446666554 355533221 23344444 665 55555588899999996532 34455444433 111344
Q ss_pred EEEEeCCeEEEEEC--CcE--EEEEECCCCcEEEeE
Q 047931 287 LCLWKNSTKLLVIN--RKN--LLVCDCNNEGSEDVA 318 (339)
Q Consensus 287 ~~~~~~~~i~~~~~--~~~--~~~yd~~t~~~~~v~ 318 (339)
+++.++|+.++..+ +.. ++..|.++++++.+.
T Consensus 297 ~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~ 332 (345)
T PF10282_consen 297 FAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVG 332 (345)
T ss_dssp EEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEE
T ss_pred EEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEec
Confidence 55566887666554 334 445567899999885
No 84
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=71.81 E-value=71 Score=28.22 Aligned_cols=118 Identities=8% Similarity=0.013 Sum_probs=61.6
Q ss_pred ECCeEEEEEecCCCCeEEEEEECC--Cceeeee----cCCCCCCC-CceeEEEE-ECCe-EEEEEeCCCeEEEEEEcccC
Q 047931 197 TNGALHWRLQKHGGDFVLAAFDLV--EERFKEF----PLPDASTS-FRFFGTGV-LGDC-LCLQFFKGKMKEHWIMKEYG 267 (339)
Q Consensus 197 ~~G~lyw~~~~~~~~~~il~fD~~--~~~~~~i----~lP~~~~~-~~~~~l~~-~~G~-L~~v~~~~~~l~iW~l~~~~ 267 (339)
=+|...+..... ...|.+||+. ++++..+ .+|..... .....+.. -+|+ |++.......+.+|.++..+
T Consensus 184 pdg~~lyv~~~~--~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~ 261 (330)
T PRK11028 184 PNQQYAYCVNEL--NSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDG 261 (330)
T ss_pred CCCCEEEEEecC--CCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCC
Confidence 345544444432 2467777765 3444332 23433211 11112222 2565 44443467889999997643
Q ss_pred CCCCeEEEEEecCCCCeeEEEEEeCCeEEEEEC--CcEEEEE--ECCCCcEEEeE
Q 047931 268 VKESWTRVFIHQDPNNVWPLCLWKNSTKLLVIN--RKNLLVC--DCNNEGSEDVA 318 (339)
Q Consensus 268 ~~~~W~~~~~i~~~~~~~~~~~~~~~~i~~~~~--~~~~~~y--d~~t~~~~~v~ 318 (339)
..+.....++...+.+-+.+.++|+.++..+ +..+.+| |.+++.++.++
T Consensus 262 --~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~~~g~l~~~~ 314 (330)
T PRK11028 262 --SVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDGETGLLTELG 314 (330)
T ss_pred --CeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEcCCCCcEEEcc
Confidence 4566665554321133456777887666543 3345555 55677887764
No 85
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=71.42 E-value=14 Score=19.80 Aligned_cols=25 Identities=12% Similarity=-0.032 Sum_probs=19.1
Q ss_pred CCeEEEEECCcEEEEEECCCCcEEE
Q 047931 292 NSTKLLVINRKNLLVCDCNNEGSED 316 (339)
Q Consensus 292 ~~~i~~~~~~~~~~~yd~~t~~~~~ 316 (339)
+|.+++...+..++.+|.++++...
T Consensus 6 ~~~v~~~~~~g~l~a~d~~~G~~~W 30 (33)
T smart00564 6 DGTVYVGSTDGTLYALDAKTGEILW 30 (33)
T ss_pred CCEEEEEcCCCEEEEEEcccCcEEE
Confidence 4566666667789999999988654
No 86
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=70.98 E-value=65 Score=27.42 Aligned_cols=119 Identities=13% Similarity=0.137 Sum_probs=64.3
Q ss_pred ECCeEEEEEecCCCCeEEEEEECCCcee-eeecCC--CCCCCC-ceeEEEE-ECCeEEEEE-eCCCeEEEEEEcccCCCC
Q 047931 197 TNGALHWRLQKHGGDFVLAAFDLVEERF-KEFPLP--DASTSF-RFFGTGV-LGDCLCLQF-FKGKMKEHWIMKEYGVKE 270 (339)
Q Consensus 197 ~~G~lyw~~~~~~~~~~il~fD~~~~~~-~~i~lP--~~~~~~-~~~~l~~-~~G~L~~v~-~~~~~l~iW~l~~~~~~~ 270 (339)
-+|...++.... ...+..+|+++.+. +.+... ...... ....+.. -+|+..++. .....+.+|.++.
T Consensus 166 ~dg~~l~~~~~~--~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~----- 238 (300)
T TIGR03866 166 ADGKELWVSSEI--GGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKT----- 238 (300)
T ss_pred CCCCEEEEEcCC--CCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCC-----
Confidence 356544444321 24788899987654 333321 111000 1112222 256654444 3566788886653
Q ss_pred CeEEEEEecCCCCeeEEEEEeCCeEEEEE--CCcEEEEEECCCCc-EEEeEEeCCC
Q 047931 271 SWTRVFIHQDPNNVWPLCLWKNSTKLLVI--NRKNLLVCDCNNEG-SEDVAVADVP 323 (339)
Q Consensus 271 ~W~~~~~i~~~~~~~~~~~~~~~~i~~~~--~~~~~~~yd~~t~~-~~~v~~~~~~ 323 (339)
|.....+...-....+++.++|+.++.. .+..+.+||.++.+ .+.+.+.+.+
T Consensus 239 -~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~ 293 (300)
T TIGR03866 239 -YEVLDYLLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVGRLP 293 (300)
T ss_pred -CcEEEEEEeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEccccc
Confidence 4444433321114456777888766654 25579999999999 4677664433
No 87
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=70.47 E-value=70 Score=27.55 Aligned_cols=140 Identities=14% Similarity=0.059 Sum_probs=76.4
Q ss_pred CCcEEEEEEeCCCceEEecccCCccCccCCCceEECCeEEEEEecCCCCeEEEEEECCC-ceeeeecCCCCCCCCceeEE
Q 047931 163 PNMSVAIFSLRMNSWRRVLASGYTRPLINVPGTLTNGALHWRLQKHGGDFVLAAFDLVE-ERFKEFPLPDASTSFRFFGT 241 (339)
Q Consensus 163 ~~~~~~vyss~~~~W~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~il~fD~~~-~~~~~i~lP~~~~~~~~~~l 241 (339)
....+..|+..++.=.....+|.. ........+++.+|-++... .....||..+ +....++.|... + .|
T Consensus 66 G~S~l~~~d~~tg~~~~~~~l~~~--~FgEGit~~~d~l~qLTWk~---~~~f~yd~~tl~~~~~~~y~~EG---W--GL 135 (264)
T PF05096_consen 66 GQSSLRKVDLETGKVLQSVPLPPR--YFGEGITILGDKLYQLTWKE---GTGFVYDPNTLKKIGTFPYPGEG---W--GL 135 (264)
T ss_dssp TEEEEEEEETTTSSEEEEEE-TTT----EEEEEEETTEEEEEESSS---SEEEEEETTTTEEEEEEE-SSS-------EE
T ss_pred CcEEEEEEECCCCcEEEEEECCcc--ccceeEEEECCEEEEEEecC---CeEEEEccccceEEEEEecCCcc---e--EE
Confidence 367888899998865444445543 23344578899999999886 6889999986 334455665322 2 34
Q ss_pred EEECCeEEEEEeCCCeEEEEEEcccCCCCCeEEEEEecCCCCeeEEEE-E----eCCeEEEEEC-CcEEEEEECCCCcEE
Q 047931 242 GVLGDCLCLQFFKGKMKEHWIMKEYGVKESWTRVFIHQDPNNVWPLCL-W----KNSTKLLVIN-RKNLLVCDCNNEGSE 315 (339)
Q Consensus 242 ~~~~G~L~~v~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~-~----~~~~i~~~~~-~~~~~~yd~~t~~~~ 315 (339)
+..+..|.+-.. ..+ ++.++. +....+.+|.....-.|+.. . -+|.|+-... ...++..|++|++..
T Consensus 136 t~dg~~Li~SDG-S~~--L~~~dP----~~f~~~~~i~V~~~g~pv~~LNELE~i~G~IyANVW~td~I~~Idp~tG~V~ 208 (264)
T PF05096_consen 136 TSDGKRLIMSDG-SSR--LYFLDP----ETFKEVRTIQVTDNGRPVSNLNELEYINGKIYANVWQTDRIVRIDPETGKVV 208 (264)
T ss_dssp EECSSCEEEE-S-SSE--EEEE-T----TT-SEEEEEE-EETTEE---EEEEEEETTEEEEEETTSSEEEEEETTT-BEE
T ss_pred EcCCCEEEEECC-ccc--eEEECC----cccceEEEEEEEECCEECCCcEeEEEEcCEEEEEeCCCCeEEEEeCCCCeEE
Confidence 444444444333 333 455553 23555555543211122221 1 1677776554 446999999999977
Q ss_pred E-eEE
Q 047931 316 D-VAV 319 (339)
Q Consensus 316 ~-v~~ 319 (339)
. +.+
T Consensus 209 ~~iDl 213 (264)
T PF05096_consen 209 GWIDL 213 (264)
T ss_dssp EEEE-
T ss_pred EEEEh
Confidence 4 444
No 88
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=70.04 E-value=71 Score=27.49 Aligned_cols=111 Identities=18% Similarity=0.115 Sum_probs=66.9
Q ss_pred ECCeEEEEEecCCCCeEEEEEECCCceee-eecCCCCCCCCceeEEEEECCeEEEEEeCCCeEEEEEEcccCCCCCeEEE
Q 047931 197 TNGALHWRLQKHGGDFVLAAFDLVEERFK-EFPLPDASTSFRFFGTGVLGDCLCLQFFKGKMKEHWIMKEYGVKESWTRV 275 (339)
Q Consensus 197 ~~G~lyw~~~~~~~~~~il~fD~~~~~~~-~i~lP~~~~~~~~~~l~~~~G~L~~v~~~~~~l~iW~l~~~~~~~~W~~~ 275 (339)
-+|.+|==+... ....|-.+|+++++.. ..++|... +.=.++..+++|+.++-.+...-++..+. ..++
T Consensus 54 ~~g~LyESTG~y-G~S~l~~~d~~tg~~~~~~~l~~~~---FgEGit~~~d~l~qLTWk~~~~f~yd~~t------l~~~ 123 (264)
T PF05096_consen 54 DDGTLYESTGLY-GQSSLRKVDLETGKVLQSVPLPPRY---FGEGITILGDKLYQLTWKEGTGFVYDPNT------LKKI 123 (264)
T ss_dssp ETTEEEEEECST-TEEEEEEEETTTSSEEEEEE-TTT-----EEEEEEETTEEEEEESSSSEEEEEETTT------TEEE
T ss_pred CCCEEEEeCCCC-CcEEEEEEECCCCcEEEEEECCccc---cceeEEEECCEEEEEEecCCeEEEEcccc------ceEE
Confidence 456666544433 2468999999998764 66999877 45567888999999988777766665553 4445
Q ss_pred EEecCCCCeeEEEEEeCC-eEEEEECCcEEEEEECCCCcE-EEeEE
Q 047931 276 FIHQDPNNVWPLCLWKNS-TKLLVINRKNLLVCDCNNEGS-EDVAV 319 (339)
Q Consensus 276 ~~i~~~~~~~~~~~~~~~-~i~~~~~~~~~~~yd~~t~~~-~~v~~ 319 (339)
.++..+- .--|++.+| .+++.-++.+++..|+++-+. +.+.+
T Consensus 124 ~~~~y~~--EGWGLt~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V 167 (264)
T PF05096_consen 124 GTFPYPG--EGWGLTSDGKRLIMSDGSSRLYFLDPETFKEVRTIQV 167 (264)
T ss_dssp EEEE-SS--S--EEEECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-
T ss_pred EEEecCC--cceEEEcCCCEEEEECCccceEEECCcccceEEEEEE
Confidence 5553321 122333455 466666667899999988764 35544
No 89
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=68.39 E-value=99 Score=28.51 Aligned_cols=114 Identities=11% Similarity=0.109 Sum_probs=72.1
Q ss_pred ceEECCeEEEEEecCCCCeEEEEEECCCceeeeecCCCCCCCCceeEEEEECCeEEEEEe-CCCeEEEEEEcccCCCCCe
Q 047931 194 GTLTNGALHWRLQKHGGDFVLAAFDLVEERFKEFPLPDASTSFRFFGTGVLGDCLCLQFF-KGKMKEHWIMKEYGVKESW 272 (339)
Q Consensus 194 ~v~~~G~lyw~~~~~~~~~~il~fD~~~~~~~~i~lP~~~~~~~~~~l~~~~G~L~~v~~-~~~~l~iW~l~~~~~~~~W 272 (339)
.++=+|.++-.+..+ ..+-.+|+.+.. ..-.+|.... ..-.+.-.++.-+++.. ++..+.+|.|....
T Consensus 354 ~fHpDgLifgtgt~d---~~vkiwdlks~~-~~a~Fpght~--~vk~i~FsENGY~Lat~add~~V~lwDLRKl~----- 422 (506)
T KOG0289|consen 354 AFHPDGLIFGTGTPD---GVVKIWDLKSQT-NVAKFPGHTG--PVKAISFSENGYWLATAADDGSVKLWDLRKLK----- 422 (506)
T ss_pred eEcCCceEEeccCCC---ceEEEEEcCCcc-ccccCCCCCC--ceeEEEeccCceEEEEEecCCeEEEEEehhhc-----
Confidence 345566666554443 577788998877 4446666432 22234445666677776 66669999998632
Q ss_pred EEEEEecCC--CCeeEEEEEeCCeEEEEECCc-EEEEEECCCCcEEEeEE
Q 047931 273 TRVFIHQDP--NNVWPLCLWKNSTKLLVINRK-NLLVCDCNNEGSEDVAV 319 (339)
Q Consensus 273 ~~~~~i~~~--~~~~~~~~~~~~~i~~~~~~~-~~~~yd~~t~~~~~v~~ 319 (339)
...++..+ .+..-+.+...|..+...+.. .++.|+-+++.|+++.-
T Consensus 423 -n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~ 471 (506)
T KOG0289|consen 423 -NFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKE 471 (506)
T ss_pred -ccceeeccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeeh
Confidence 23344432 246667777777666655433 58888888999998843
No 90
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=66.13 E-value=6.3 Score=23.78 Aligned_cols=22 Identities=27% Similarity=0.280 Sum_probs=18.6
Q ss_pred CEEEEEcccccceeecCCCCCC
Q 047931 112 KIFFVLNPLTRESKRIPDVPFE 133 (339)
Q Consensus 112 ~~~~V~NP~T~~~~~LP~~~~~ 133 (339)
+.++++||.|++|.+++..|.+
T Consensus 19 nd~~~~~~~~~~W~~~~~~P~~ 40 (49)
T PF13415_consen 19 NDVWVFDLDTNTWTRIGDLPPP 40 (49)
T ss_pred cCEEEEECCCCEEEECCCCCCC
Confidence 5789999999999999776644
No 91
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=65.35 E-value=1.5e+02 Score=29.52 Aligned_cols=120 Identities=12% Similarity=0.070 Sum_probs=0.0
Q ss_pred eEECCeEEEEEecCCCCeEEEEEECCCceeeeecCCCCCCCCceeEEEEE-CCeEEEEEeCCCeEEEEEEcc--------
Q 047931 195 TLTNGALHWRLQKHGGDFVLAAFDLVEERFKEFPLPDASTSFRFFGTGVL-GDCLCLQFFKGKMKEHWIMKE-------- 265 (339)
Q Consensus 195 v~~~G~lyw~~~~~~~~~~il~fD~~~~~~~~i~lP~~~~~~~~~~l~~~-~G~L~~v~~~~~~l~iW~l~~-------- 265 (339)
|.+|-.=-|++-......-+++++-.+|++-.=+ +........+... ||++.+.+.++..+.||..+.
T Consensus 313 ~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQ---QgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFt 389 (893)
T KOG0291|consen 313 VSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQ---QGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFT 389 (893)
T ss_pred EEecccCCEEEEcCCccceEEEEEeeccceeeec---cccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEec
Q ss_pred -----------------------cCCCCCeEEE-------EEecCCCCeeEEEEEeCCeEEEEECCcE--EEEEECCCCc
Q 047931 266 -----------------------YGVKESWTRV-------FIHQDPNNVWPLCLWKNSTKLLVINRKN--LLVCDCNNEG 313 (339)
Q Consensus 266 -----------------------~~~~~~W~~~-------~~i~~~~~~~~~~~~~~~~i~~~~~~~~--~~~yd~~t~~ 313 (339)
+|.-..|-++ ++.+.+..+.-+++.+.|++++...-.. +++|+++|++
T Consensus 390 eHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGq 469 (893)
T KOG0291|consen 390 EHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQ 469 (893)
T ss_pred cCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCe
Q ss_pred EEEe
Q 047931 314 SEDV 317 (339)
Q Consensus 314 ~~~v 317 (339)
+..+
T Consensus 470 llDi 473 (893)
T KOG0291|consen 470 LLDI 473 (893)
T ss_pred eeeh
No 92
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=63.30 E-value=18 Score=20.39 Aligned_cols=24 Identities=8% Similarity=-0.152 Sum_probs=18.0
Q ss_pred eEEEEECCcEEEEEECCCCcEEEe
Q 047931 294 TKLLVINRKNLLVCDCNNEGSEDV 317 (339)
Q Consensus 294 ~i~~~~~~~~~~~yd~~t~~~~~v 317 (339)
.+++...++.++.+|.+|++...-
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~ 25 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWK 25 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEE
T ss_pred EEEEeCCCCEEEEEECCCCCEEEe
Confidence 455555566899999999997654
No 93
>PLN00181 protein SPA1-RELATED; Provisional
Probab=62.20 E-value=1.9e+02 Score=29.49 Aligned_cols=183 Identities=9% Similarity=-0.049 Sum_probs=89.5
Q ss_pred cCCCEEEEEcccccceeecCCCCCCCCCCCCCCeeEEee-eCCceEEEEEeeEeCCCcEEEEEEeCCCc-eEEecccCCc
Q 047931 109 PKPKIFFVLNPLTRESKRIPDVPFEPFPRSSDDLYGFGC-TAEDCKFIKVSFGLKPNMSVAIFSLRMNS-WRRVLASGYT 186 (339)
Q Consensus 109 ~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~-~~~~ykvv~~~~~~~~~~~~~vyss~~~~-W~~~~~~~~~ 186 (339)
..+..+.|||..+++....-..+.. ...++.+ ..+.-.++... ....+.+|+.+++. ...+... .
T Consensus 552 ~~Dg~v~lWd~~~~~~~~~~~~H~~-------~V~~l~~~p~~~~~L~Sgs----~Dg~v~iWd~~~~~~~~~~~~~-~- 618 (793)
T PLN00181 552 NFEGVVQVWDVARSQLVTEMKEHEK-------RVWSIDYSSADPTLLASGS----DDGSVKLWSINQGVSIGTIKTK-A- 618 (793)
T ss_pred eCCCeEEEEECCCCeEEEEecCCCC-------CEEEEEEcCCCCCEEEEEc----CCCEEEEEECCCCcEEEEEecC-C-
Confidence 3456788888777654321111111 1445555 22222233222 24567888876542 2222110 0
Q ss_pred cCccCCCceEE---CCeEEEEEecCCCCeEEEEEECCCceeeeecCCCCCCCCceeEEEEECCeEEEEEeCCCeEEEEEE
Q 047931 187 RPLINVPGTLT---NGALHWRLQKHGGDFVLAAFDLVEERFKEFPLPDASTSFRFFGTGVLGDCLCLQFFKGKMKEHWIM 263 (339)
Q Consensus 187 ~~~~~~~~v~~---~G~lyw~~~~~~~~~~il~fD~~~~~~~~i~lP~~~~~~~~~~l~~~~G~L~~v~~~~~~l~iW~l 263 (339)
....+.+ +|.....+... ..|..+|+.+.+-....+..... ....+.-.++...+....+..+.||.+
T Consensus 619 ----~v~~v~~~~~~g~~latgs~d---g~I~iwD~~~~~~~~~~~~~h~~--~V~~v~f~~~~~lvs~s~D~~ikiWd~ 689 (793)
T PLN00181 619 ----NICCVQFPSESGRSLAFGSAD---HKVYYYDLRNPKLPLCTMIGHSK--TVSYVRFVDSSTLVSSSTDNTLKLWDL 689 (793)
T ss_pred ----CeEEEEEeCCCCCEEEEEeCC---CeEEEEECCCCCccceEecCCCC--CEEEEEEeCCCEEEEEECCCEEEEEeC
Confidence 0011211 34444444332 57888998765321111111110 112333346776666667889999998
Q ss_pred cccCCCCCeEEEEEecCC-CCeeEEEEEeCCeEEEEE-CCcEEEEEECCCCc
Q 047931 264 KEYGVKESWTRVFIHQDP-NNVWPLCLWKNSTKLLVI-NRKNLLVCDCNNEG 313 (339)
Q Consensus 264 ~~~~~~~~W~~~~~i~~~-~~~~~~~~~~~~~i~~~~-~~~~~~~yd~~t~~ 313 (339)
........|..+.++... -....+++..++.++... .++.+..|+..+..
T Consensus 690 ~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~ 741 (793)
T PLN00181 690 SMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPM 741 (793)
T ss_pred CCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCC
Confidence 753222346555555431 113456666666655544 45568888876553
No 94
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=61.75 E-value=23 Score=24.83 Aligned_cols=16 Identities=19% Similarity=0.177 Sum_probs=14.3
Q ss_pred cEEEEEECCCCcEEEe
Q 047931 302 KNLLVCDCNNEGSEDV 317 (339)
Q Consensus 302 ~~~~~yd~~t~~~~~v 317 (339)
++++.||++|++.+.+
T Consensus 37 GRll~ydp~t~~~~vl 52 (89)
T PF03088_consen 37 GRLLRYDPSTKETTVL 52 (89)
T ss_dssp EEEEEEETTTTEEEEE
T ss_pred cCEEEEECCCCeEEEe
Confidence 5799999999998877
No 95
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=61.72 E-value=1.3e+02 Score=27.34 Aligned_cols=112 Identities=14% Similarity=0.136 Sum_probs=69.5
Q ss_pred ECCeEEEEEecCCCCeEEEEEECCCce------eeeecCC---CCCCC-CceeEEEEE--CCeEEEEEe-------CCCe
Q 047931 197 TNGALHWRLQKHGGDFVLAAFDLVEER------FKEFPLP---DASTS-FRFFGTGVL--GDCLCLQFF-------KGKM 257 (339)
Q Consensus 197 ~~G~lyw~~~~~~~~~~il~fD~~~~~------~~~i~lP---~~~~~-~~~~~l~~~--~G~L~~v~~-------~~~~ 257 (339)
.+|..+|++.++ .|..+|+.+.. |..+..- ..... .... ++.. +++||+... ....
T Consensus 204 ~dg~~~~vs~eG----~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~-ia~~~dg~~lyV~~~~~~~~thk~~~ 278 (352)
T TIGR02658 204 KSGRLVWPTYTG----KIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQ-VAYHRARDRIYLLADQRAKWTHKTAS 278 (352)
T ss_pred CCCcEEEEecCC----eEEEEecCCCcceecceeeeccccccccccCCCccee-EEEcCCCCEEEEEecCCccccccCCC
Confidence 379999999886 88899965432 3332111 11111 1122 3333 567777443 1122
Q ss_pred EEEEEEcccCCCCCeEEEEEecCCCCeeEEEEEeCCe-EEEEEC--CcEEEEEECCCCc-EEEe
Q 047931 258 KEHWIMKEYGVKESWTRVFIHQDPNNVWPLCLWKNST-KLLVIN--RKNLLVCDCNNEG-SEDV 317 (339)
Q Consensus 258 l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~-i~~~~~--~~~~~~yd~~t~~-~~~v 317 (339)
=+||+++- .++..+.+|...-....+++.++|+ .++..+ +..+.++|..+.+ ++.+
T Consensus 279 ~~V~ViD~----~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 279 RFLFVVDA----KTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred CEEEEEEC----CCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 37888884 6688888887643366788888888 666554 3359999999986 5565
No 96
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=60.45 E-value=88 Score=27.41 Aligned_cols=73 Identities=16% Similarity=0.105 Sum_probs=43.3
Q ss_pred CCeEEEEEeCCCeEEEEEEcccCCCCCeEEEEEecCCCCeeEEEEEeCC-eEEEEECCcEEEEEECCCCcEEEeEEe
Q 047931 245 GDCLCLQFFKGKMKEHWIMKEYGVKESWTRVFIHQDPNNVWPLCLWKNS-TKLLVINRKNLLVCDCNNEGSEDVAVA 320 (339)
Q Consensus 245 ~G~L~~v~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~-~i~~~~~~~~~~~yd~~t~~~~~v~~~ 320 (339)
.+-|..+..-+.++++|.+++.|.... .-+..++.+ ..-.+..++| +++....++.+-.||+.+++...|+..
T Consensus 39 ~~~~~~A~SWD~tVR~wevq~~g~~~~-ka~~~~~~P--vL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~v~~H 112 (347)
T KOG0647|consen 39 ADNLLAAGSWDGTVRIWEVQNSGQLVP-KAQQSHDGP--VLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVSQVAAH 112 (347)
T ss_pred cCceEEecccCCceEEEEEecCCcccc-hhhhccCCC--eEEEEEccCCceEEeeccCCceEEEEccCCCeeeeeec
Confidence 334444455677899999998542211 111222212 1223334566 455555566799999999999999764
No 97
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=60.44 E-value=28 Score=26.07 Aligned_cols=32 Identities=9% Similarity=0.065 Sum_probs=23.4
Q ss_pred EEeCCeEEEEECC-----cEEEEEECCCCcEEEeEEe
Q 047931 289 LWKNSTKLLVINR-----KNLLVCDCNNEGSEDVAVA 320 (339)
Q Consensus 289 ~~~~~~i~~~~~~-----~~~~~yd~~t~~~~~v~~~ 320 (339)
+.-||-+++.... ..++.||+++++++.+..+
T Consensus 2 icinGvly~~a~~~~~~~~~IvsFDv~~E~f~~i~~P 38 (129)
T PF08268_consen 2 ICINGVLYWLAWSEDSDNNVIVSFDVRSEKFRFIKLP 38 (129)
T ss_pred EEECcEEEeEEEECCCCCcEEEEEEcCCceEEEEEee
Confidence 3446766665432 3599999999999999885
No 98
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=58.08 E-value=1.2e+02 Score=25.78 Aligned_cols=186 Identities=12% Similarity=0.119 Sum_probs=95.5
Q ss_pred eCceEEEcc-CCCEEEEEcccccceeecCCCCCCCCCCCCCCeeEEeeeCCceEEEEEeeEeCCCcEEEEEEeCCC----
Q 047931 101 CNGLVCTTP-KPKIFFVLNPLTRESKRIPDVPFEPFPRSSDDLYGFGCTAEDCKFIKVSFGLKPNMSVAIFSLRMN---- 175 (339)
Q Consensus 101 ~~GLl~~~~-~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~~~~~ykvv~~~~~~~~~~~~~vyss~~~---- 175 (339)
.+|--|+.. .++.+-+|||..+....-=..... ...-.....+.-|+. .......+.+++..|+
T Consensus 27 ~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~-------EVlD~~~s~Dnskf~----s~GgDk~v~vwDV~TGkv~R 95 (307)
T KOG0316|consen 27 VDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGH-------EVLDAALSSDNSKFA----SCGGDKAVQVWDVNTGKVDR 95 (307)
T ss_pred cCCCEEEEcCCCceEEeecccccceeeeecCCCc-------eeeeccccccccccc----cCCCCceEEEEEcccCeeee
Confidence 456666654 467899999998875432111111 000000011111211 1123567888888875
Q ss_pred ceEEecccCCccCccCCCceEECCeEEEEEecCCCCeEEEEEECCCceeeeecCCCCCCCCceeEEEEECCeEEEEEeCC
Q 047931 176 SWRRVLASGYTRPLINVPGTLTNGALHWRLQKHGGDFVLAAFDLVEERFKEFPLPDASTSFRFFGTGVLGDCLCLQFFKG 255 (339)
Q Consensus 176 ~W~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~il~fD~~~~~~~~i~lP~~~~~~~~~~l~~~~G~L~~v~~~~ 255 (339)
+||....--....+...++|.+.|.+ ...+-++|..+.++..|+.=....+ ...-....+...+....+
T Consensus 96 r~rgH~aqVNtV~fNeesSVv~Sgsf---------D~s~r~wDCRS~s~ePiQildea~D--~V~Si~v~~heIvaGS~D 164 (307)
T KOG0316|consen 96 RFRGHLAQVNTVRFNEESSVVASGSF---------DSSVRLWDCRSRSFEPIQILDEAKD--GVSSIDVAEHEIVAGSVD 164 (307)
T ss_pred ecccccceeeEEEecCcceEEEeccc---------cceeEEEEcccCCCCccchhhhhcC--ceeEEEecccEEEeeccC
Confidence 57665322222222334456555543 2478899999999888875444432 122233455555555566
Q ss_pred CeEEEEEEcccCCCCCeEEEEEecCCCCeeEEEEEeCCeEEEE-ECCcEEEEEECCCCcEE
Q 047931 256 KMKEHWIMKEYGVKESWTRVFIHQDPNNVWPLCLWKNSTKLLV-INRKNLLVCDCNNEGSE 315 (339)
Q Consensus 256 ~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~i~~~-~~~~~~~~yd~~t~~~~ 315 (339)
.++..+.+...... ..-+..+ +.-+.+.++++-.+. .-+..+-..|-+|+++-
T Consensus 165 GtvRtydiR~G~l~-----sDy~g~p--it~vs~s~d~nc~La~~l~stlrLlDk~tGklL 218 (307)
T KOG0316|consen 165 GTVRTYDIRKGTLS-----SDYFGHP--ITSVSFSKDGNCSLASSLDSTLRLLDKETGKLL 218 (307)
T ss_pred CcEEEEEeecceee-----hhhcCCc--ceeEEecCCCCEEEEeeccceeeecccchhHHH
Confidence 67777666641100 0001111 345566666654443 33445777777777743
No 99
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=56.78 E-value=1.5e+02 Score=26.58 Aligned_cols=151 Identities=11% Similarity=0.020 Sum_probs=79.9
Q ss_pred CCcEEEEEEeCCCceEEecc--cCCccCccCCCceE-ECCe-EEEEEecCCCCeEEEEEECCCceeeee----cCCCCCC
Q 047931 163 PNMSVAIFSLRMNSWRRVLA--SGYTRPLINVPGTL-TNGA-LHWRLQKHGGDFVLAAFDLVEERFKEF----PLPDAST 234 (339)
Q Consensus 163 ~~~~~~vyss~~~~W~~~~~--~~~~~~~~~~~~v~-~~G~-lyw~~~~~~~~~~il~fD~~~~~~~~i----~lP~~~~ 234 (339)
..-++.+|+..++.=..... ++.+ ..++.-++ =||+ .|.++.- ++...+..+|....++..+ -+|.+..
T Consensus 165 G~Dri~~y~~~dg~L~~~~~~~v~~G--~GPRHi~FHpn~k~aY~v~EL-~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~ 241 (346)
T COG2706 165 GTDRIFLYDLDDGKLTPADPAEVKPG--AGPRHIVFHPNGKYAYLVNEL-NSTVDVLEYNPAVGKFEELQTIDTLPEDFT 241 (346)
T ss_pred CCceEEEEEcccCccccccccccCCC--CCcceEEEcCCCcEEEEEecc-CCEEEEEEEcCCCceEEEeeeeccCccccC
Confidence 46688899988776554421 2211 11111222 3454 4555544 3456677777777888776 4777664
Q ss_pred CC-ceeEEEEE-CCeEEEEEe-CCCeEEEEEEcccCCCCCeEEEEEecCCCCeeEEE--EEeCCeEEEEECCc----EEE
Q 047931 235 SF-RFFGTGVL-GDCLCLQFF-KGKMKEHWIMKEYGVKESWTRVFIHQDPNNVWPLC--LWKNSTKLLVINRK----NLL 305 (339)
Q Consensus 235 ~~-~~~~l~~~-~G~L~~v~~-~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~--~~~~~~i~~~~~~~----~~~ 305 (339)
.. ....+-.. +|+..++.- ....|.+...++.+ ..=..+...+. -|..|-. +...|++++..+.+ .+|
T Consensus 242 g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~--g~L~~~~~~~t-eg~~PR~F~i~~~g~~Liaa~q~sd~i~vf 318 (346)
T COG2706 242 GTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDG--GKLELVGITPT-EGQFPRDFNINPSGRFLIAANQKSDNITVF 318 (346)
T ss_pred CCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCC--CEEEEEEEecc-CCcCCccceeCCCCCEEEEEccCCCcEEEE
Confidence 42 22223222 666544444 44455555555543 32222222211 1222444 44566777765432 388
Q ss_pred EEECCCCcEEEeEE
Q 047931 306 VCDCNNEGSEDVAV 319 (339)
Q Consensus 306 ~yd~~t~~~~~v~~ 319 (339)
.-|.+|+++..+..
T Consensus 319 ~~d~~TG~L~~~~~ 332 (346)
T COG2706 319 ERDKETGRLTLLGR 332 (346)
T ss_pred EEcCCCceEEeccc
Confidence 88999999998854
No 100
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=55.84 E-value=1.1e+02 Score=27.53 Aligned_cols=67 Identities=18% Similarity=0.107 Sum_probs=46.4
Q ss_pred CCeEEEEEeCCCeEEEEEEcccCCCCCeEEEEEecC-CCCeeEEEEEeCCeEEEE-ECCcEEEEEECCCCcEEEe
Q 047931 245 GDCLCLQFFKGKMKEHWIMKEYGVKESWTRVFIHQD-PNNVWPLCLWKNSTKLLV-INRKNLLVCDCNNEGSEDV 317 (339)
Q Consensus 245 ~G~L~~v~~~~~~l~iW~l~~~~~~~~W~~~~~i~~-~~~~~~~~~~~~~~i~~~-~~~~~~~~yd~~t~~~~~v 317 (339)
+|..+.....+..|.+|.+.-. ..+.++.. .-+++-+++.++|+.++. .+++.+-+||+++++-.+.
T Consensus 303 ~~~~l~s~SrDktIk~wdv~tg------~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~ 371 (406)
T KOG0295|consen 303 GGQVLGSGSRDKTIKIWDVSTG------MCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKT 371 (406)
T ss_pred CccEEEeecccceEEEEeccCC------eEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeec
Confidence 4456665668899999999841 23344433 223778888888987775 4666799999999985443
No 101
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=55.49 E-value=1.2e+02 Score=25.00 Aligned_cols=93 Identities=10% Similarity=-0.014 Sum_probs=50.5
Q ss_pred eEEEEEECCCce-eeeecCCCCCCCCceeEEEEE-CCeEEEEEeCCCeEEEEEEcccCCCCCeEEEEEe-cCCCCeeEEE
Q 047931 212 FVLAAFDLVEER-FKEFPLPDASTSFRFFGTGVL-GDCLCLQFFKGKMKEHWIMKEYGVKESWTRVFIH-QDPNNVWPLC 288 (339)
Q Consensus 212 ~~il~fD~~~~~-~~~i~lP~~~~~~~~~~l~~~-~G~L~~v~~~~~~l~iW~l~~~~~~~~W~~~~~i-~~~~~~~~~~ 288 (339)
..+..+|+.+.+ ...+..+.. ....+... +|+..++......+.+|.++.. .....+ ...-...-+.
T Consensus 157 ~~i~i~d~~~~~~~~~~~~~~~----~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~------~~~~~~~~~~~~i~~~~ 226 (289)
T cd00200 157 GTIKLWDLRTGKCVATLTGHTG----EVNSVAFSPDGEKLLSSSSDGTIKLWDLSTG------KCLGTLRGHENGVNSVA 226 (289)
T ss_pred CcEEEEEccccccceeEecCcc----ccceEEECCCcCEEEEecCCCcEEEEECCCC------ceecchhhcCCceEEEE
Confidence 368888887543 233332111 11122222 5545555555778899988741 112222 1111244556
Q ss_pred EEeCCeEEEEEC-CcEEEEEECCCCcE
Q 047931 289 LWKNSTKLLVIN-RKNLLVCDCNNEGS 314 (339)
Q Consensus 289 ~~~~~~i~~~~~-~~~~~~yd~~t~~~ 314 (339)
+.+++.+++... ++.+..||.++++.
T Consensus 227 ~~~~~~~~~~~~~~~~i~i~~~~~~~~ 253 (289)
T cd00200 227 FSPDGYLLASGSEDGTIRVWDLRTGEC 253 (289)
T ss_pred EcCCCcEEEEEcCCCcEEEEEcCCcee
Confidence 666667777665 66799999987553
No 102
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=55.17 E-value=13 Score=34.71 Aligned_cols=88 Identities=15% Similarity=0.093 Sum_probs=51.4
Q ss_pred CceEEeccc--CCccCccCCCceEECCeEEEEEecC-CCCeEEEEEECCCceeeee----cCCCCCCCCceeEEEEECCe
Q 047931 175 NSWRRVLAS--GYTRPLINVPGTLTNGALHWRLQKH-GGDFVLAAFDLVEERFKEF----PLPDASTSFRFFGTGVLGDC 247 (339)
Q Consensus 175 ~~W~~~~~~--~~~~~~~~~~~v~~~G~lyw~~~~~-~~~~~il~fD~~~~~~~~i----~lP~~~~~~~~~~l~~~~G~ 247 (339)
-.||.+... |......+..+|.+.-.+--+.... +..+.+.+||..+++|-.- ++|+.+. -+.....+.+
T Consensus 17 ~rWrrV~~~tGPvPrpRHGHRAVaikELiviFGGGNEGiiDELHvYNTatnqWf~PavrGDiPpgcA---A~GfvcdGtr 93 (830)
T KOG4152|consen 17 VRWRRVQQSTGPVPRPRHGHRAVAIKELIVIFGGGNEGIIDELHVYNTATNQWFAPAVRGDIPPGCA---AFGFVCDGTR 93 (830)
T ss_pred cceEEEecccCCCCCccccchheeeeeeEEEecCCcccchhhhhhhccccceeecchhcCCCCCchh---hcceEecCce
Confidence 379988543 2222345566777776665554443 4467889999999999753 4555552 1222223446
Q ss_pred EEEEEe----CCCeEEEEEEcc
Q 047931 248 LCLQFF----KGKMKEHWIMKE 265 (339)
Q Consensus 248 L~~v~~----~~~~l~iW~l~~ 265 (339)
|+++.. ....-++++|+.
T Consensus 94 ilvFGGMvEYGkYsNdLYELQa 115 (830)
T KOG4152|consen 94 ILVFGGMVEYGKYSNDLYELQA 115 (830)
T ss_pred EEEEccEeeeccccchHHHhhh
Confidence 666555 233445666664
No 103
>PF13013 F-box-like_2: F-box-like domain
Probab=53.68 E-value=2.7 Score=30.72 Aligned_cols=28 Identities=14% Similarity=0.078 Sum_probs=22.9
Q ss_pred CCCcHHHHHHHHccCCcccceeeeeccc
Q 047931 2 ATIPHEIIFEILLRLPVKSLCRFKCVSS 29 (339)
Q Consensus 2 ~~Lp~Dll~eIL~rLP~~~l~r~~~VcK 29 (339)
.+||+||+..|+..-....+...-..|+
T Consensus 23 ~DLP~ELl~~I~~~C~~~~l~~l~~~~~ 50 (109)
T PF13013_consen 23 LDLPWELLQLIFDYCNDPILLALSRTCR 50 (109)
T ss_pred hhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 4799999999999999888766555555
No 104
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=52.40 E-value=1.6e+02 Score=25.68 Aligned_cols=118 Identities=8% Similarity=0.019 Sum_probs=67.7
Q ss_pred eEECCeEEEEEecCCCCeEEEEEECCCceeeeecCCCCCCCCceeEEEEECCeEEEEEeCCCeEEEEEEcccCCCCCeEE
Q 047931 195 TLTNGALHWRLQKHGGDFVLAAFDLVEERFKEFPLPDASTSFRFFGTGVLGDCLCLQFFKGKMKEHWIMKEYGVKESWTR 274 (339)
Q Consensus 195 v~~~G~lyw~~~~~~~~~~il~fD~~~~~~~~i~lP~~~~~~~~~~l~~~~G~L~~v~~~~~~l~iW~l~~~~~~~~W~~ 274 (339)
+.-||.+|+-...+ .+|.-.|+.+..-..++.|..........-....|++.........+. ..+- ...+|..
T Consensus 196 atpdGsvwyaslag---naiaridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~--rfdP--s~~sW~e 268 (353)
T COG4257 196 ATPDGSVWYASLAG---NAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLH--RFDP--SVTSWIE 268 (353)
T ss_pred ECCCCcEEEEeccc---cceEEcccccCCcceecCCCcccccccccccCccCcEEEeccCCceee--EeCc--cccccee
Confidence 44579998876554 589999999998888888887432111111223555555433333322 2221 1245653
Q ss_pred EEEecC-CCCeeEEEEEeCCeEEEE-ECCcEEEEEECCCCcEEEeEEe
Q 047931 275 VFIHQD-PNNVWPLCLWKNSTKLLV-INRKNLLVCDCNNEGSEDVAVA 320 (339)
Q Consensus 275 ~~~i~~-~~~~~~~~~~~~~~i~~~-~~~~~~~~yd~~t~~~~~v~~~ 320 (339)
+.++. +-.-.-+.+...|.+.+. .+...+..||++|.+++.+.+.
T Consensus 269 -ypLPgs~arpys~rVD~~grVW~sea~agai~rfdpeta~ftv~p~p 315 (353)
T COG4257 269 -YPLPGSKARPYSMRVDRHGRVWLSEADAGAIGRFDPETARFTVLPIP 315 (353)
T ss_pred -eeCCCCCCCcceeeeccCCcEEeeccccCceeecCcccceEEEecCC
Confidence 44433 101223444445556552 3444699999999999988653
No 105
>PF13859 BNR_3: BNR repeat-like domain; PDB: 3B69_A.
Probab=51.46 E-value=1.8e+02 Score=25.87 Aligned_cols=107 Identities=11% Similarity=0.091 Sum_probs=53.1
Q ss_pred cEEEEEEeCC--CceEEecccCCcc-------CccCCCceEE-CCeEEEEEecC---CC-CeEEEEEECC-Cceeeee-c
Q 047931 165 MSVAIFSLRM--NSWRRVLASGYTR-------PLINVPGTLT-NGALHWRLQKH---GG-DFVLAAFDLV-EERFKEF-P 228 (339)
Q Consensus 165 ~~~~vyss~~--~~W~~~~~~~~~~-------~~~~~~~v~~-~G~lyw~~~~~---~~-~~~il~fD~~-~~~~~~i-~ 228 (339)
..+.++-+.. ..|.....++... .-...++|.. ||.|-+-.... +. ...++.|-.. .++|..- -
T Consensus 88 ~~llLvks~~~g~~W~~~~~l~~~~~~~~~~figgGGSGV~m~dGTLVFPv~a~~~~~~~~~SlIiYS~d~g~~W~lskg 167 (310)
T PF13859_consen 88 WGLLLVKSTDGGIKWGDTKSLPSTSFQSWKQFIGGGGSGVVMEDGTLVFPVQATKKNGDGTVSLIIYSTDDGKTWKLSKG 167 (310)
T ss_dssp EEEEEEEEESSSSEE---EE-GGGS-EEEEEEEE-SEE-EE-TTS-EEEEEEEEETT---EEEEEEEESSTTSS-EE-S-
T ss_pred cceeeeeccCCcceeeecccCCchhccccceeecCCCCceEEcCCCEEEEEeeeccCccceEEEEEEECCCccceEeccc
Confidence 3344444432 2587765443221 1123345666 88888865443 33 3788888777 4556543 2
Q ss_pred CCCCCCCCceeEEEEE-CCeEEEEEe-CCCeEEEEEEcccCCCCCeEEE
Q 047931 229 LPDASTSFRFFGTGVL-GDCLCLQFF-KGKMKEHWIMKEYGVKESWTRV 275 (339)
Q Consensus 229 lP~~~~~~~~~~l~~~-~G~L~~v~~-~~~~l~iW~l~~~~~~~~W~~~ 275 (339)
.|+ ..+..+.+++. +|+|.|+.. +...-.|+.=.|- +.+|+..
T Consensus 168 ~s~--~gC~~psv~EWe~gkLlM~~~c~~g~rrVYeS~Dm--G~tWtea 212 (310)
T PF13859_consen 168 MSP--AGCSDPSVVEWEDGKLLMMTACDDGRRRVYESGDM--GTTWTEA 212 (310)
T ss_dssp -----TT-EEEEEEEE-TTEEEEEEE-TTS---EEEESST--TSS-EE-
T ss_pred cCC--CCcceEEEEeccCCeeEEEEecccceEEEEEEccc--ceehhhc
Confidence 222 22367899999 899999998 5565566666653 4789975
No 106
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=51.33 E-value=1.7e+02 Score=25.75 Aligned_cols=104 Identities=17% Similarity=0.142 Sum_probs=58.3
Q ss_pred eEEEEEECCCc-----eeeee-cCCCCCCCCceeEEEEECCeEEEEEeCCCeEEEEEEcccCCCCCeEEEEEecCCCCee
Q 047931 212 FVLAAFDLVEE-----RFKEF-PLPDASTSFRFFGTGVLGDCLCLQFFKGKMKEHWIMKEYGVKESWTRVFIHQDPNNVW 285 (339)
Q Consensus 212 ~~il~fD~~~~-----~~~~i-~lP~~~~~~~~~~l~~~~G~L~~v~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~ 285 (339)
..++.|++.+. ++..+ ..+... .-..++..+|+|.+ ..+..+.++.+++. .++..+.....+. .
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g---~V~ai~~~~~~lv~--~~g~~l~v~~l~~~---~~l~~~~~~~~~~--~ 131 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKG---PVTAICSFNGRLVV--AVGNKLYVYDLDNS---KTLLKKAFYDSPF--Y 131 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS----EEEEEEETTEEEE--EETTEEEEEEEETT---SSEEEEEEE-BSS--S
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecC---cceEhhhhCCEEEE--eecCEEEEEEccCc---ccchhhheecceE--E
Confidence 56777777764 44433 111111 23467777888443 34678889999972 2588887776643 2
Q ss_pred EEEEEeCCeEEEEECC-c--EEEEEECCCCcEEEeEEeCCCCc
Q 047931 286 PLCLWKNSTKLLVINR-K--NLLVCDCNNEGSEDVAVADVPNW 325 (339)
Q Consensus 286 ~~~~~~~~~i~~~~~~-~--~~~~yd~~t~~~~~v~~~~~~~~ 325 (339)
+..+...++.++..+. + .++.|+.+.+++..+.....+.+
T Consensus 132 i~sl~~~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~ 174 (321)
T PF03178_consen 132 ITSLSVFKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRW 174 (321)
T ss_dssp EEEEEEETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BE
T ss_pred EEEEeccccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCcc
Confidence 3333322345555543 2 36677887888888876544444
No 107
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=49.92 E-value=1.8e+02 Score=28.07 Aligned_cols=111 Identities=14% Similarity=0.082 Sum_probs=60.0
Q ss_pred eEEEEEecCCCCeEEEEEECCCceeee-ecCCCCCCCCceeEEEEECCeEEEEEeCCCeEEEEEEcccCCCCCeEEEEEe
Q 047931 200 ALHWRLQKHGGDFVLAAFDLVEERFKE-FPLPDASTSFRFFGTGVLGDCLCLQFFKGKMKEHWIMKEYGVKESWTRVFIH 278 (339)
Q Consensus 200 ~lyw~~~~~~~~~~il~fD~~~~~~~~-i~lP~~~~~~~~~~l~~~~G~L~~v~~~~~~l~iW~l~~~~~~~~W~~~~~i 278 (339)
-+|..+... .|..||++.++|-. +.. ..+....+.+.+++|-|+ ++..+..++.|...+-..-.+=.....+
T Consensus 147 Dly~~gsg~----evYRlNLEqGrfL~P~~~--~~~~lN~v~in~~hgLla-~Gt~~g~VEfwDpR~ksrv~~l~~~~~v 219 (703)
T KOG2321|consen 147 DLYLVGSGS----EVYRLNLEQGRFLNPFET--DSGELNVVSINEEHGLLA-CGTEDGVVEFWDPRDKSRVGTLDAASSV 219 (703)
T ss_pred cEEEeecCc----ceEEEEcccccccccccc--ccccceeeeecCccceEE-ecccCceEEEecchhhhhheeeeccccc
Confidence 455555554 78889998888743 221 111112334455566444 4456788999988752110101001122
Q ss_pred cC-CC-----CeeEEEEEeCC-eEEEEECCcEEEEEECCCCcEEEe
Q 047931 279 QD-PN-----NVWPLCLWKNS-TKLLVINRKNLLVCDCNNEGSEDV 317 (339)
Q Consensus 279 ~~-~~-----~~~~~~~~~~~-~i~~~~~~~~~~~yd~~t~~~~~v 317 (339)
+. +- ....+.+.++| .+-+-...+.++.||+++.+--.+
T Consensus 220 ~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~ 265 (703)
T KOG2321|consen 220 NSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLV 265 (703)
T ss_pred CCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceee
Confidence 11 11 25556666666 355555566799999998874444
No 108
>PRK04792 tolB translocation protein TolB; Provisional
Probab=49.83 E-value=2.2e+02 Score=26.62 Aligned_cols=187 Identities=8% Similarity=-0.012 Sum_probs=93.4
Q ss_pred CCEEEEEcccccceeecCCCCCCCCCCCCCCeeEEee-eCCceEEEEEeeEeCCCcEEEEEEeCCCceEEecccCCccCc
Q 047931 111 PKIFFVLNPLTRESKRIPDVPFEPFPRSSDDLYGFGC-TAEDCKFIKVSFGLKPNMSVAIFSLRMNSWRRVLASGYTRPL 189 (339)
Q Consensus 111 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~-~~~~ykvv~~~~~~~~~~~~~vyss~~~~W~~~~~~~~~~~~ 189 (339)
..++++.|..|++...+...+.. .....+ ..+++ ++... ...+...+.+++.+++..+.+......
T Consensus 241 ~~~L~~~dl~tg~~~~lt~~~g~--------~~~~~wSPDG~~-La~~~-~~~g~~~Iy~~dl~tg~~~~lt~~~~~--- 307 (448)
T PRK04792 241 KAEIFVQDIYTQVREKVTSFPGI--------NGAPRFSPDGKK-LALVL-SKDGQPEIYVVDIATKALTRITRHRAI--- 307 (448)
T ss_pred CcEEEEEECCCCCeEEecCCCCC--------cCCeeECCCCCE-EEEEE-eCCCCeEEEEEECCCCCeEECccCCCC---
Confidence 35799999999887766543322 112233 22333 22222 222355677788888887776432111
Q ss_pred cCCCceEECCe-EEEEEecCCCCeEEEEEECCCceeeeecCCCCCCCCceeEEEEECCe-EEEEEeCCCeEEEEEEcccC
Q 047931 190 INVPGTLTNGA-LHWRLQKHGGDFVLAAFDLVEERFKEFPLPDASTSFRFFGTGVLGDC-LCLQFFKGKMKEHWIMKEYG 267 (339)
Q Consensus 190 ~~~~~v~~~G~-lyw~~~~~~~~~~il~fD~~~~~~~~i~lP~~~~~~~~~~l~~~~G~-L~~v~~~~~~l~iW~l~~~~ 267 (339)
.......-+|. +++..... ....|..+|+++.+.+.+....... ..... .-+|+ |++.........||.++-.+
T Consensus 308 ~~~p~wSpDG~~I~f~s~~~-g~~~Iy~~dl~~g~~~~Lt~~g~~~--~~~~~-SpDG~~l~~~~~~~g~~~I~~~dl~~ 383 (448)
T PRK04792 308 DTEPSWHPDGKSLIFTSERG-GKPQIYRVNLASGKVSRLTFEGEQN--LGGSI-TPDGRSMIMVNRTNGKFNIARQDLET 383 (448)
T ss_pred ccceEECCCCCEEEEEECCC-CCceEEEEECCCCCEEEEecCCCCC--cCeeE-CCCCCEEEEEEecCCceEEEEEECCC
Confidence 01111223553 44443322 2346888898888776653221111 11111 22554 44444455567888887422
Q ss_pred CCCCeEEEEEecCCCCeeEEEEEeCCe-EEEEECC---cEEEEEECCCCcEEEeEE
Q 047931 268 VKESWTRVFIHQDPNNVWPLCLWKNST-KLLVINR---KNLLVCDCNNEGSEDVAV 319 (339)
Q Consensus 268 ~~~~W~~~~~i~~~~~~~~~~~~~~~~-i~~~~~~---~~~~~yd~~t~~~~~v~~ 319 (339)
.....+.. ......| .+.++|+ |++.... ..++.+|.+.+..+.+..
T Consensus 384 --g~~~~lt~--~~~d~~p-s~spdG~~I~~~~~~~g~~~l~~~~~~G~~~~~l~~ 434 (448)
T PRK04792 384 --GAMQVLTS--TRLDESP-SVAPNGTMVIYSTTYQGKQVLAAVSIDGRFKARLPA 434 (448)
T ss_pred --CCeEEccC--CCCCCCc-eECCCCCEEEEEEecCCceEEEEEECCCCceEECcC
Confidence 22322111 1111234 4566775 5554332 238888987776666643
No 109
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=49.75 E-value=2.3e+02 Score=26.66 Aligned_cols=116 Identities=9% Similarity=-0.040 Sum_probs=0.0
Q ss_pred eEECCeEEEEEecCCCCeEEEEEECCCceeeeecCCCCCCCCceeEEEEECCeEEEEEeCCCeEEEEEEcccCCCCCeEE
Q 047931 195 TLTNGALHWRLQKHGGDFVLAAFDLVEERFKEFPLPDASTSFRFFGTGVLGDCLCLQFFKGKMKEHWIMKEYGVKESWTR 274 (339)
Q Consensus 195 v~~~G~lyw~~~~~~~~~~il~fD~~~~~~~~i~lP~~~~~~~~~~l~~~~G~L~~v~~~~~~l~iW~l~~~~~~~~W~~ 274 (339)
+..+|..-+-+... ..+...++.+.+...+.-+..........--..+|+..+-...+.++.||.+++ ..=..
T Consensus 167 fs~~g~~l~~~~~~---~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~----~~~~~ 239 (456)
T KOG0266|consen 167 FSPDGRALAAASSD---GLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKD----DGRNL 239 (456)
T ss_pred EcCCCCeEEEccCC---CcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccC----CCeEE
Q ss_pred EEEecCCCCeeEEEEEeCCeEEEEECCcE-EEEEECCCCcEEEe
Q 047931 275 VFIHQDPNNVWPLCLWKNSTKLLVINRKN-LLVCDCNNEGSEDV 317 (339)
Q Consensus 275 ~~~i~~~~~~~~~~~~~~~~i~~~~~~~~-~~~yd~~t~~~~~v 317 (339)
+.-..+.-...-+++.+.|++++.....+ +.+||.++++..+.
T Consensus 240 ~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~ 283 (456)
T KOG0266|consen 240 KTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRK 283 (456)
T ss_pred EEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEe
No 110
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=49.51 E-value=2.4e+02 Score=26.80 Aligned_cols=38 Identities=18% Similarity=0.225 Sum_probs=23.8
Q ss_pred EECCeEEEEEecC-------CCCeEEEEEECCCceeeeecCCCCC
Q 047931 196 LTNGALHWRLQKH-------GGDFVLAAFDLVEERFKEFPLPDAS 233 (339)
Q Consensus 196 ~~~G~lyw~~~~~-------~~~~~il~fD~~~~~~~~i~lP~~~ 233 (339)
..+|-+|-++.-+ +.+..|..-|-.=.+-+.+.+|...
T Consensus 285 aH~ggv~~L~~lr~GtllSGgKDRki~~Wd~~y~k~r~~elPe~~ 329 (626)
T KOG2106|consen 285 AHDGGVFSLCMLRDGTLLSGGKDRKIILWDDNYRKLRETELPEQF 329 (626)
T ss_pred ecCCceEEEEEecCccEeecCccceEEeccccccccccccCchhc
Confidence 3456666655433 2245778888445667778899765
No 111
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.34 E-value=2.1e+02 Score=26.09 Aligned_cols=57 Identities=12% Similarity=0.177 Sum_probs=32.0
Q ss_pred CcEEEEEEeCC--CceEEec----ccCCccCccCCCceEECC--eEEEEEecCCCCeEEEEEECCCc
Q 047931 164 NMSVAIFSLRM--NSWRRVL----ASGYTRPLINVPGTLTNG--ALHWRLQKHGGDFVLAAFDLVEE 222 (339)
Q Consensus 164 ~~~~~vyss~~--~~W~~~~----~~~~~~~~~~~~~v~~~G--~lyw~~~~~~~~~~il~fD~~~~ 222 (339)
...++|++++. ..|+.-. .+....+.+.+...++.| .-.+.+..+ ...+-.||+..+
T Consensus 172 ~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~--~hqvR~YDt~~q 236 (412)
T KOG3881|consen 172 INELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITR--YHQVRLYDTRHQ 236 (412)
T ss_pred ccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEec--ceeEEEecCccc
Confidence 46789999886 4675441 122222344566678888 555554443 235566666644
No 112
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=49.34 E-value=61 Score=30.44 Aligned_cols=74 Identities=14% Similarity=0.167 Sum_probs=45.3
Q ss_pred eEEEEEECCCceeeee-cCCCCCCCCceeEEEE-ECCeEEEEEeCCCeEEEEEEcccCCCCCeEEEEEecC-CCCeeEEE
Q 047931 212 FVLAAFDLVEERFKEF-PLPDASTSFRFFGTGV-LGDCLCLQFFKGKMKEHWIMKEYGVKESWTRVFIHQD-PNNVWPLC 288 (339)
Q Consensus 212 ~~il~fD~~~~~~~~i-~lP~~~~~~~~~~l~~-~~G~L~~v~~~~~~l~iW~l~~~~~~~~W~~~~~i~~-~~~~~~~~ 288 (339)
..+-..|+.+.+-+.= .++..... ...|+. .|-+||+.+..+..|.||.|.+ =+++..+.- ..|..-+-
T Consensus 487 stlsiWDLAapTprikaeltssapa--CyALa~spDakvcFsccsdGnI~vwDLhn------q~~VrqfqGhtDGascId 558 (705)
T KOG0639|consen 487 STLSIWDLAAPTPRIKAELTSSAPA--CYALAISPDAKVCFSCCSDGNIAVWDLHN------QTLVRQFQGHTDGASCID 558 (705)
T ss_pred ceeeeeeccCCCcchhhhcCCcchh--hhhhhcCCccceeeeeccCCcEEEEEccc------ceeeecccCCCCCceeEE
Confidence 4677788887766543 55543322 123443 4899999999999999999986 123334432 34444444
Q ss_pred EEeCC
Q 047931 289 LWKNS 293 (339)
Q Consensus 289 ~~~~~ 293 (339)
+.++|
T Consensus 559 is~dG 563 (705)
T KOG0639|consen 559 ISKDG 563 (705)
T ss_pred ecCCC
Confidence 44444
No 113
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=49.05 E-value=2.2e+02 Score=26.27 Aligned_cols=68 Identities=12% Similarity=0.093 Sum_probs=42.3
Q ss_pred ECCeEEEEEeCCCeEEEEEEcccCCCCCeEEEEEe-cCCCC--eeEEEEEeCCeEEEEEC--CcEEEEEECCCCcEEEe
Q 047931 244 LGDCLCLQFFKGKMKEHWIMKEYGVKESWTRVFIH-QDPNN--VWPLCLWKNSTKLLVIN--RKNLLVCDCNNEGSEDV 317 (339)
Q Consensus 244 ~~G~L~~v~~~~~~l~iW~l~~~~~~~~W~~~~~i-~~~~~--~~~~~~~~~~~i~~~~~--~~~~~~yd~~t~~~~~v 317 (339)
-+|++.++......+.+|.++| |..+..- ....+ ..--|+.+.++-++..+ +.+++.|+.++++.-.+
T Consensus 405 ~d~k~~LvnL~~qei~LWDl~e------~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~ 477 (519)
T KOG0293|consen 405 KDGKLALVNLQDQEIHLWDLEE------NKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAV 477 (519)
T ss_pred CCCcEEEEEcccCeeEEeecch------hhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEe
Confidence 3899999999999999999996 4333221 11112 22334444333333333 34699999999886544
No 114
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=48.66 E-value=1e+02 Score=29.02 Aligned_cols=96 Identities=8% Similarity=-0.036 Sum_probs=60.0
Q ss_pred eEEEEEECCCc--eeeeecCCCCCCCCcee-EEEEECCeEEEEEeCCCeEEEEEEcccCCCCCeEEEEEecCCC-----C
Q 047931 212 FVLAAFDLVEE--RFKEFPLPDASTSFRFF-GTGVLGDCLCLQFFKGKMKEHWIMKEYGVKESWTRVFIHQDPN-----N 283 (339)
Q Consensus 212 ~~il~fD~~~~--~~~~i~lP~~~~~~~~~-~l~~~~G~L~~v~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~-----~ 283 (339)
..|-+.|+... ++-.-.|+..-.+.+.. ...-.||+-.++.....++.||.|-.-. -+|..++ .
T Consensus 440 gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapT--------prikaeltssapa 511 (705)
T KOG0639|consen 440 GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPT--------PRIKAELTSSAPA 511 (705)
T ss_pred CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeeccCCC--------cchhhhcCCcchh
Confidence 46777776643 22222444433332221 2233488888888889999999998521 1222211 2
Q ss_pred eeEEEEEeCCeEEEEE-CCcEEEEEECCCCcEE
Q 047931 284 VWPLCLWKNSTKLLVI-NRKNLLVCDCNNEGSE 315 (339)
Q Consensus 284 ~~~~~~~~~~~i~~~~-~~~~~~~yd~~t~~~~ 315 (339)
|..+++.+|.++.|.+ .++.+.+||+.++.+-
T Consensus 512 CyALa~spDakvcFsccsdGnI~vwDLhnq~~V 544 (705)
T KOG0639|consen 512 CYALAISPDAKVCFSCCSDGNIAVWDLHNQTLV 544 (705)
T ss_pred hhhhhcCCccceeeeeccCCcEEEEEcccceee
Confidence 7788888888888855 4667999999887754
No 115
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=48.59 E-value=95 Score=26.39 Aligned_cols=62 Identities=13% Similarity=0.095 Sum_probs=41.8
Q ss_pred CeEEEEEEcccC----CCCCeEEEEEecC---CC-CeeEEEEEe-CCeEEEEECCcEEEEEECCCCcEEEe
Q 047931 256 KMKEHWIMKEYG----VKESWTRVFIHQD---PN-NVWPLCLWK-NSTKLLVINRKNLLVCDCNNEGSEDV 317 (339)
Q Consensus 256 ~~l~iW~l~~~~----~~~~W~~~~~i~~---~~-~~~~~~~~~-~~~i~~~~~~~~~~~yd~~t~~~~~v 317 (339)
..+.=|...+.. .+..|+.+..+.. ++ ++..+.+.+ ++.|++..++..++..|++++++++.
T Consensus 81 G~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~ 151 (325)
T KOG0649|consen 81 GLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQRE 151 (325)
T ss_pred ceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEE
Confidence 556667776542 2457876633322 11 255666664 55788888888899999999999987
No 116
>PRK05137 tolB translocation protein TolB; Provisional
Probab=48.25 E-value=2.3e+02 Score=26.31 Aligned_cols=187 Identities=12% Similarity=0.065 Sum_probs=90.0
Q ss_pred CCEEEEEcccccceeecCCCCCCCCCCCCCCeeEEee-eCCceEEEEEeeEeCCCcEEEEEEeCCCceEEecccCCccCc
Q 047931 111 PKIFFVLNPLTRESKRIPDVPFEPFPRSSDDLYGFGC-TAEDCKFIKVSFGLKPNMSVAIFSLRMNSWRRVLASGYTRPL 189 (339)
Q Consensus 111 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~-~~~~ykvv~~~~~~~~~~~~~vyss~~~~W~~~~~~~~~~~~ 189 (339)
...++++|+.|++.+.+...+.. ..+..+ ..++.-++.. .......+.+++.+++.-+.+...+..
T Consensus 225 ~~~i~~~dl~~g~~~~l~~~~g~--------~~~~~~SPDG~~la~~~--~~~g~~~Iy~~d~~~~~~~~Lt~~~~~--- 291 (435)
T PRK05137 225 RPRVYLLDLETGQRELVGNFPGM--------TFAPRFSPDGRKVVMSL--SQGGNTDIYTMDLRSGTTTRLTDSPAI--- 291 (435)
T ss_pred CCEEEEEECCCCcEEEeecCCCc--------ccCcEECCCCCEEEEEE--ecCCCceEEEEECCCCceEEccCCCCc---
Confidence 45899999999988777543322 112223 2222222222 222345667778877776666432211
Q ss_pred cCCCceEECCe-EEEEEecCCCCeEEEEEECCCceeeeecCCCCCCCCceeEEEEECC-eEEEEEeCCCeEEEEEEcccC
Q 047931 190 INVPGTLTNGA-LHWRLQKHGGDFVLAAFDLVEERFKEFPLPDASTSFRFFGTGVLGD-CLCLQFFKGKMKEHWIMKEYG 267 (339)
Q Consensus 190 ~~~~~v~~~G~-lyw~~~~~~~~~~il~fD~~~~~~~~i~lP~~~~~~~~~~l~~~~G-~L~~v~~~~~~l~iW~l~~~~ 267 (339)
.......-+|. +++..... ....|..+|+.+++.+.+...... . ..+... -+| .|+++........||.++-.+
T Consensus 292 ~~~~~~spDG~~i~f~s~~~-g~~~Iy~~d~~g~~~~~lt~~~~~-~-~~~~~S-pdG~~ia~~~~~~~~~~i~~~d~~~ 367 (435)
T PRK05137 292 DTSPSYSPDGSQIVFESDRS-GSPQLYVMNADGSNPRRISFGGGR-Y-STPVWS-PRGDLIAFTKQGGGQFSIGVMKPDG 367 (435)
T ss_pred cCceeEcCCCCEEEEEECCC-CCCeEEEEECCCCCeEEeecCCCc-c-cCeEEC-CCCCEEEEEEcCCCceEEEEEECCC
Confidence 01112233453 44433222 223577788887766655321111 0 111211 244 444444444445666665322
Q ss_pred CCCCeEEEEEecCCCCeeEEEEEeCCe-EEEEECC------cEEEEEECCCCcEEEeEE
Q 047931 268 VKESWTRVFIHQDPNNVWPLCLWKNST-KLLVINR------KNLLVCDCNNEGSEDVAV 319 (339)
Q Consensus 268 ~~~~W~~~~~i~~~~~~~~~~~~~~~~-i~~~~~~------~~~~~yd~~t~~~~~v~~ 319 (339)
+.. ...+-... ..-..+.+||+ |++.... ..++.+|+++++.+.+.-
T Consensus 368 --~~~-~~lt~~~~--~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~~~l~~ 421 (435)
T PRK05137 368 --SGE-RILTSGFL--VEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNEREVPT 421 (435)
T ss_pred --Cce-EeccCCCC--CCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCceEEccC
Confidence 212 21111111 22334566775 4454431 369999999988877643
No 117
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=48.07 E-value=1.1e+02 Score=26.98 Aligned_cols=61 Identities=7% Similarity=0.140 Sum_probs=39.6
Q ss_pred CCCeEEEEEEcccCCCCCeEEEEEecCCCCeeEEEEEeCCeEEEEE-CCcEEEEEECCCCcEEEeEE
Q 047931 254 KGKMKEHWIMKEYGVKESWTRVFIHQDPNNVWPLCLWKNSTKLLVI-NRKNLLVCDCNNEGSEDVAV 319 (339)
Q Consensus 254 ~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~i~~~~-~~~~~~~yd~~t~~~~~v~~ 319 (339)
++.++.||.|+.-. .-+.+|.......-+++..++.|+-+. ++..+-.||+..+.+-++..
T Consensus 376 DDrTvKvWdLrNMR-----splATIRtdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPr 437 (481)
T KOG0300|consen 376 DDRTVKVWDLRNMR-----SPLATIRTDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPR 437 (481)
T ss_pred CCceEEEeeecccc-----CcceeeecCCccceeEeecCCceEEeccCCceEEEEecCCCccccCCc
Confidence 67788899888621 123455432124566676666566554 45569999999999888854
No 118
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=47.78 E-value=1.8e+02 Score=24.91 Aligned_cols=100 Identities=13% Similarity=0.092 Sum_probs=63.7
Q ss_pred CeEEEEEECCCceeeeecCCCCCCCCceeEEEEE-CCeEEEEEeCCCeEEEEEEcccCCCCCeEEEEEecCCCC-eeEEE
Q 047931 211 DFVLAAFDLVEERFKEFPLPDASTSFRFFGTGVL-GDCLCLQFFKGKMKEHWIMKEYGVKESWTRVFIHQDPNN-VWPLC 288 (339)
Q Consensus 211 ~~~il~fD~~~~~~~~i~lP~~~~~~~~~~l~~~-~G~L~~v~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~-~~~~~ 288 (339)
...|-+-|+.++.+....+|.... ..-.|.+. +|+...+.-...+.-+|.|-.......-+-+..++..-+ ..-.-
T Consensus 145 sg~irvWDl~~~~c~~~liPe~~~--~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~ 222 (311)
T KOG0315|consen 145 SGNIRVWDLGENSCTHELIPEDDT--SIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCL 222 (311)
T ss_pred CCcEEEEEccCCccccccCCCCCc--ceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEE
Confidence 358999999999999999998874 23355555 777665555777888999875322222333333332212 22333
Q ss_pred EEeCCeEEEEEC-CcEEEEEECCCC
Q 047931 289 LWKNSTKLLVIN-RKNLLVCDCNNE 312 (339)
Q Consensus 289 ~~~~~~i~~~~~-~~~~~~yd~~t~ 312 (339)
+.++++.+..+. ++.+..||.++.
T Consensus 223 lSPd~k~lat~ssdktv~iwn~~~~ 247 (311)
T KOG0315|consen 223 LSPDVKYLATCSSDKTVKIWNTDDF 247 (311)
T ss_pred ECCCCcEEEeecCCceEEEEecCCc
Confidence 456766666554 445999999998
No 119
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=47.31 E-value=1.6e+02 Score=24.15 Aligned_cols=94 Identities=6% Similarity=0.011 Sum_probs=49.8
Q ss_pred eEEEEEECCCcee-eeecCCCCCCCCceeEEEEE-CCeEEEEEeCCCeEEEEEEcccCCCCCeEEEEEecC-CCCeeEEE
Q 047931 212 FVLAAFDLVEERF-KEFPLPDASTSFRFFGTGVL-GDCLCLQFFKGKMKEHWIMKEYGVKESWTRVFIHQD-PNNVWPLC 288 (339)
Q Consensus 212 ~~il~fD~~~~~~-~~i~lP~~~~~~~~~~l~~~-~G~L~~v~~~~~~l~iW~l~~~~~~~~W~~~~~i~~-~~~~~~~~ 288 (339)
..+..+|+.+.+. ..+.. ... ....+... ++.+.+....+..+.+|.++... ....+.. .-...-+.
T Consensus 115 ~~i~~~~~~~~~~~~~~~~--~~~--~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~------~~~~~~~~~~~i~~~~ 184 (289)
T cd00200 115 KTIKVWDVETGKCLTTLRG--HTD--WVNSVAFSPDGTFVASSSQDGTIKLWDLRTGK------CVATLTGHTGEVNSVA 184 (289)
T ss_pred CeEEEEECCCcEEEEEecc--CCC--cEEEEEEcCcCCEEEEEcCCCcEEEEEccccc------cceeEecCccccceEE
Confidence 4788899885443 33331 110 11223333 35555544457789999887421 1222222 11144556
Q ss_pred EEeCCe-EEEEECCcEEEEEECCCCcEE
Q 047931 289 LWKNST-KLLVINRKNLLVCDCNNEGSE 315 (339)
Q Consensus 289 ~~~~~~-i~~~~~~~~~~~yd~~t~~~~ 315 (339)
+.++++ +++...++.+..||.++++..
T Consensus 185 ~~~~~~~l~~~~~~~~i~i~d~~~~~~~ 212 (289)
T cd00200 185 FSPDGEKLLSSSSDGTIKLWDLSTGKCL 212 (289)
T ss_pred ECCCcCEEEEecCCCcEEEEECCCCcee
Confidence 666664 545454667999998875543
No 120
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=46.97 E-value=41 Score=33.13 Aligned_cols=55 Identities=9% Similarity=0.087 Sum_probs=40.8
Q ss_pred CCeEEEEEEcccCCCCCeEEEEEecCCCCeeEEEEEeCCeEEE-EECCcEEEEEECCCCcEE
Q 047931 255 GKMKEHWIMKEYGVKESWTRVFIHQDPNNVWPLCLWKNSTKLL-VINRKNLLVCDCNNEGSE 315 (339)
Q Consensus 255 ~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~i~~-~~~~~~~~~yd~~t~~~~ 315 (339)
+..++||-..+... .-|.....| +..+++.++|+..+ -.-++.+.+|+.+..+++
T Consensus 431 D~KvRiWsI~d~~V-v~W~Dl~~l-----ITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~ 486 (712)
T KOG0283|consen 431 DGKVRLWSISDKKV-VDWNDLRDL-----ITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLV 486 (712)
T ss_pred ccceEEeecCcCee-Eeehhhhhh-----heeEEeccCCceEEEEEeccEEEEEEccCCeEE
Confidence 67899999987654 348766544 77888889886444 444667999999998876
No 121
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.57 E-value=82 Score=32.00 Aligned_cols=79 Identities=15% Similarity=0.231 Sum_probs=47.2
Q ss_pred EECCeEEEEEe--CCCeEEEEEEcccCCCCCeEEEEEecCCC-CeeEEEEEeCCeEEEEECCc-EEEEEECCCCc-EEEe
Q 047931 243 VLGDCLCLQFF--KGKMKEHWIMKEYGVKESWTRVFIHQDPN-NVWPLCLWKNSTKLLVINRK-NLLVCDCNNEG-SEDV 317 (339)
Q Consensus 243 ~~~G~L~~v~~--~~~~l~iW~l~~~~~~~~W~~~~~i~~~~-~~~~~~~~~~~~i~~~~~~~-~~~~yd~~t~~-~~~v 317 (339)
...+.|=++.. ++..+.+|.|.+ ...|+.- +..... .+.-+-+++..++++..+.. .+-+||++.++ ++..
T Consensus 213 AfhpTlpliVSG~DDRqVKlWrmne---tKaWEvD-tcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tf 288 (1202)
T KOG0292|consen 213 AFHPTLPLIVSGADDRQVKLWRMNE---TKAWEVD-TCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTF 288 (1202)
T ss_pred EecCCcceEEecCCcceeeEEEecc---ccceeeh-hhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeee
Confidence 34454433333 788899999998 3569863 332211 13444455655677766544 58999998877 5555
Q ss_pred EEeCCCCc
Q 047931 318 AVADVPNW 325 (339)
Q Consensus 318 ~~~~~~~~ 325 (339)
+..+...|
T Consensus 289 rrendRFW 296 (1202)
T KOG0292|consen 289 RRENDRFW 296 (1202)
T ss_pred eccCCeEE
Confidence 44443333
No 122
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=46.22 E-value=2.2e+02 Score=27.15 Aligned_cols=33 Identities=6% Similarity=0.122 Sum_probs=25.3
Q ss_pred eeEEEEEeCCeEEEEECC-cEEEEEECCCCcEEE
Q 047931 284 VWPLCLWKNSTKLLVINR-KNLLVCDCNNEGSED 316 (339)
Q Consensus 284 ~~~~~~~~~~~i~~~~~~-~~~~~yd~~t~~~~~ 316 (339)
...+++.+++..+...+. ++++.||.++++.+.
T Consensus 490 iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~ 523 (603)
T KOG0318|consen 490 ITDVAYSPDGAYLAAGDASRKVVLYDVASREVKT 523 (603)
T ss_pred ceEEEECCCCcEEEEeccCCcEEEEEcccCceec
Confidence 567778888877777764 469999999988743
No 123
>KOG2502 consensus Tub family proteins [General function prediction only]
Probab=45.17 E-value=12 Score=33.17 Aligned_cols=36 Identities=19% Similarity=0.432 Sum_probs=29.9
Q ss_pred CCCcHHHHHHHHccCC--------cccceeeeeccccccccCCC
Q 047931 2 ATIPHEIIFEILLRLP--------VKSLCRFKCVSSSWLALISD 37 (339)
Q Consensus 2 ~~Lp~Dll~eIL~rLP--------~~~l~r~~~VcK~W~~li~s 37 (339)
++||.++|.+|+.|.. -++...+..|||.|+.+..+
T Consensus 46 ~~l~~~~L~d~~~r~eese~~wp~r~~vvs~~~~~~~~r~~~~~ 89 (355)
T KOG2502|consen 46 AALPPELLSDVLKRDEESEDTWPSRRNVVSCAGVCDKWREISKE 89 (355)
T ss_pred hcCCHhHHHHHhhhccccccccccccccccccchhhhhhhhccc
Confidence 3799999999999886 23688999999999997654
No 124
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=44.71 E-value=2.4e+02 Score=25.54 Aligned_cols=97 Identities=9% Similarity=-0.021 Sum_probs=52.4
Q ss_pred cEEEEEEeCCCceEEecccCCccCccCCCceEECCeEEEEEecC-------CCCeEEEEEECCCcee-eeecCCCCCC--
Q 047931 165 MSVAIFSLRMNSWRRVLASGYTRPLINVPGTLTNGALHWRLQKH-------GGDFVLAAFDLVEERF-KEFPLPDAST-- 234 (339)
Q Consensus 165 ~~~~vyss~~~~W~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~-------~~~~~il~fD~~~~~~-~~i~lP~~~~-- 234 (339)
..+.|++..+ ++.+..++.+. .+...+.-+|+.-+++... .....|..+|+++.+. ..|++|+..+
T Consensus 27 ~~v~ViD~~~--~~v~g~i~~G~--~P~~~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~ 102 (352)
T TIGR02658 27 TQVYTIDGEA--GRVLGMTDGGF--LPNPVVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFL 102 (352)
T ss_pred ceEEEEECCC--CEEEEEEEccC--CCceeECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhh
Confidence 3455555544 55554444332 1111244556555555441 2357999999999765 5788887632
Q ss_pred -CCceeEEEEE-CCeE-EEEEeC-CCeEEEEEEcc
Q 047931 235 -SFRFFGTGVL-GDCL-CLQFFK-GKMKEHWIMKE 265 (339)
Q Consensus 235 -~~~~~~l~~~-~G~L-~~v~~~-~~~l~iW~l~~ 265 (339)
......++.. +|+. ++.... ...+.|..+..
T Consensus 103 ~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~ 137 (352)
T TIGR02658 103 VGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEG 137 (352)
T ss_pred ccCccceEEECCCCCEEEEecCCCCCEEEEEECCC
Confidence 1112222333 6664 444544 77777766653
No 125
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=44.11 E-value=2.7e+02 Score=25.88 Aligned_cols=105 Identities=18% Similarity=0.141 Sum_probs=60.4
Q ss_pred cEEEEEEeCCCceEEecccCCccCccCCCceEECCeEEEEEecCCCCeEEEEEECCC-ceeeeecCCCCCCCCceeEEEE
Q 047931 165 MSVAIFSLRMNSWRRVLASGYTRPLINVPGTLTNGALHWRLQKHGGDFVLAAFDLVE-ERFKEFPLPDASTSFRFFGTGV 243 (339)
Q Consensus 165 ~~~~vyss~~~~W~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~il~fD~~~-~~~~~i~lP~~~~~~~~~~l~~ 243 (339)
..+.||+..++. .++.+|.. ...-..+.+.-.=||+.... .+..|..+|++. +.|..++++...+. ....+ .
T Consensus 369 ~~vkiwdlks~~--~~a~Fpgh--t~~vk~i~FsENGY~Lat~a-dd~~V~lwDLRKl~n~kt~~l~~~~~v-~s~~f-D 441 (506)
T KOG0289|consen 369 GVVKIWDLKSQT--NVAKFPGH--TGPVKAISFSENGYWLATAA-DDGSVKLWDLRKLKNFKTIQLDEKKEV-NSLSF-D 441 (506)
T ss_pred ceEEEEEcCCcc--ccccCCCC--CCceeEEEeccCceEEEEEe-cCCeEEEEEehhhcccceeeccccccc-eeEEE-c
Confidence 444555554443 33344432 12334567777779987653 234699999986 56888888876531 11111 1
Q ss_pred ECCeEEEEEeCCCeEEEEEEcccCCCCCeEEEEEecC
Q 047931 244 LGDCLCLQFFKGKMKEHWIMKEYGVKESWTRVFIHQD 280 (339)
Q Consensus 244 ~~G~L~~v~~~~~~l~iW~l~~~~~~~~W~~~~~i~~ 280 (339)
.-|....+. +..+.|+..+. ...+|.+......
T Consensus 442 ~SGt~L~~~--g~~l~Vy~~~k--~~k~W~~~~~~~~ 474 (506)
T KOG0289|consen 442 QSGTYLGIA--GSDLQVYICKK--KTKSWTEIKELAD 474 (506)
T ss_pred CCCCeEEee--cceeEEEEEec--ccccceeeehhhh
Confidence 133333333 66677777775 2467999877655
No 126
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=43.92 E-value=2.3e+02 Score=25.08 Aligned_cols=32 Identities=25% Similarity=0.291 Sum_probs=27.2
Q ss_pred CeEEEEEecCCCCeEEEEEECCCceeeeecCCCCC
Q 047931 199 GALHWRLQKHGGDFVLAAFDLVEERFKEFPLPDAS 233 (339)
Q Consensus 199 G~lyw~~~~~~~~~~il~fD~~~~~~~~i~lP~~~ 233 (339)
+++||..-.+ ..|+.+|+.+.+-+.++.|...
T Consensus 37 ~~L~w~DI~~---~~i~r~~~~~g~~~~~~~p~~~ 68 (307)
T COG3386 37 GALLWVDILG---GRIHRLDPETGKKRVFPSPGGF 68 (307)
T ss_pred CEEEEEeCCC---CeEEEecCCcCceEEEECCCCc
Confidence 5689987665 5899999999999999988877
No 127
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=42.60 E-value=2.3e+02 Score=28.49 Aligned_cols=104 Identities=11% Similarity=0.118 Sum_probs=59.5
Q ss_pred EEEEECCCceeee---ecCCCCCCCCceeEEEEECCeEEEEEeCCCeEEEEEEccc----CCCCCeEEEE-EecCCCCee
Q 047931 214 LAAFDLVEERFKE---FPLPDASTSFRFFGTGVLGDCLCLQFFKGKMKEHWIMKEY----GVKESWTRVF-IHQDPNNVW 285 (339)
Q Consensus 214 il~fD~~~~~~~~---i~lP~~~~~~~~~~l~~~~G~L~~v~~~~~~l~iW~l~~~----~~~~~W~~~~-~i~~~~~~~ 285 (339)
.-.||.....|.. |..|.+...-....+....-.-|+....+..+.||.+.++ ..+..|.... .-+......
T Consensus 434 FW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~ 513 (792)
T KOG1963|consen 434 FWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPIT 513 (792)
T ss_pred EEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCccc
Confidence 4455666666643 4666554210011111111113333337888999999654 2235798763 223322245
Q ss_pred EEEEEeCCeEEEEECCcEEEEEECCC-CcEEEe
Q 047931 286 PLCLWKNSTKLLVINRKNLLVCDCNN-EGSEDV 317 (339)
Q Consensus 286 ~~~~~~~~~i~~~~~~~~~~~yd~~t-~~~~~v 317 (339)
..++..+|.++....+..+..||..+ ++++..
T Consensus 514 a~~fs~dGslla~s~~~~Itiwd~~~~~~l~~~ 546 (792)
T KOG1963|consen 514 ALCFSQDGSLLAVSFDDTITIWDYDTKNELLCT 546 (792)
T ss_pred chhhcCCCcEEEEecCCEEEEecCCChhhhhcc
Confidence 66777888888888888899999999 444433
No 128
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=41.43 E-value=1.1e+02 Score=26.10 Aligned_cols=88 Identities=11% Similarity=-0.048 Sum_probs=49.9
Q ss_pred EEEEEECCCceeeeecCCCCCCCCceeEEEEECCeEEEEEe---CCCeEEEEEEcccCCCCCeEEEE-EecCCCCeeEEE
Q 047931 213 VLAAFDLVEERFKEFPLPDASTSFRFFGTGVLGDCLCLQFF---KGKMKEHWIMKEYGVKESWTRVF-IHQDPNNVWPLC 288 (339)
Q Consensus 213 ~il~fD~~~~~~~~i~lP~~~~~~~~~~l~~~~G~L~~v~~---~~~~l~iW~l~~~~~~~~W~~~~-~i~~~~~~~~~~ 288 (339)
.-..||+.+++++.+.++..... .....--+|+|..+.. ....+.+..-.+++....|.... .+..+-.+.-..
T Consensus 47 ~s~~yD~~tn~~rpl~v~td~FC--Sgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~ 124 (243)
T PF07250_consen 47 HSVEYDPNTNTFRPLTVQTDTFC--SGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTAT 124 (243)
T ss_pred EEEEEecCCCcEEeccCCCCCcc--cCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccce
Confidence 45789999999998877654421 1111223788887777 23445554433323345688764 343322122333
Q ss_pred EEeCCeEEEEECCc
Q 047931 289 LWKNSTKLLVINRK 302 (339)
Q Consensus 289 ~~~~~~i~~~~~~~ 302 (339)
.-+||+++++.+..
T Consensus 125 ~L~DG~vlIvGG~~ 138 (243)
T PF07250_consen 125 TLPDGRVLIVGGSN 138 (243)
T ss_pred ECCCCCEEEEeCcC
Confidence 33578888877644
No 129
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=41.16 E-value=39 Score=31.75 Aligned_cols=123 Identities=11% Similarity=0.121 Sum_probs=72.0
Q ss_pred CCCceEECC--eEEEEEecCC--CCeEEEEEECCCceeeeec----CCCCCCCCceeEEEEECCeEEEEEe---------
Q 047931 191 NVPGTLTNG--ALHWRLQKHG--GDFVLAAFDLVEERFKEFP----LPDASTSFRFFGTGVLGDCLCLQFF--------- 253 (339)
Q Consensus 191 ~~~~v~~~G--~lyw~~~~~~--~~~~il~fD~~~~~~~~i~----lP~~~~~~~~~~l~~~~G~L~~v~~--------- 253 (339)
+...|+-.| ++|..++.++ .-.-.-+|+...+.|..+. .|.... +.....-+++.+||+.+.
T Consensus 263 GHQMV~~~~~~CiYLYGGWdG~~~l~DFW~Y~v~e~~W~~iN~~t~~PG~Rs-CHRMVid~S~~KLYLlG~Y~~sS~r~~ 341 (723)
T KOG2437|consen 263 GHQMVIDVQTECVYLYGGWDGTQDLADFWAYSVKENQWTCINRDTEGPGARS-CHRMVIDISRRKLYLLGRYLDSSVRNS 341 (723)
T ss_pred cceEEEeCCCcEEEEecCcccchhHHHHHhhcCCcceeEEeecCCCCCcchh-hhhhhhhhhHhHHhhhhhccccccccc
Confidence 344577777 8998876651 1223567888889999984 333221 111122345667887765
Q ss_pred CCCeEEEEEEcccCCCCCeEEEEEecC-CCC------eeEEEEEeCCeEEEEECC----------cEEEEEECCCCcEEE
Q 047931 254 KGKMKEHWIMKEYGVKESWTRVFIHQD-PNN------VWPLCLWKNSTKLLVINR----------KNLLVCDCNNEGSED 316 (339)
Q Consensus 254 ~~~~l~iW~l~~~~~~~~W~~~~~i~~-~~~------~~~~~~~~~~~i~~~~~~----------~~~~~yd~~t~~~~~ 316 (339)
-..+-++|+.+-. +..|+... .+. ..| -.-+++..+..+++..++ +.++.||.+...|+.
T Consensus 342 ~s~RsDfW~FDi~--~~~W~~ls-~dt~~dGGP~~vfDHqM~Vd~~k~~iyVfGGr~~~~~e~~f~GLYaf~~~~~~w~~ 418 (723)
T KOG2437|consen 342 KSLRSDFWRFDID--TNTWMLLS-EDTAADGGPKLVFDHQMCVDSEKHMIYVFGGRILTCNEPQFSGLYAFNCQCQTWKL 418 (723)
T ss_pred cccccceEEEecC--CceeEEec-ccccccCCcceeecceeeEecCcceEEEecCeeccCCCccccceEEEecCCccHHH
Confidence 1446789999853 46798652 211 111 234455444334443321 259999999999886
Q ss_pred e
Q 047931 317 V 317 (339)
Q Consensus 317 v 317 (339)
.
T Consensus 419 l 419 (723)
T KOG2437|consen 419 L 419 (723)
T ss_pred H
Confidence 5
No 130
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=39.79 E-value=2.9e+02 Score=25.12 Aligned_cols=98 Identities=11% Similarity=0.002 Sum_probs=53.3
Q ss_pred eEEEEEECCCce-eeeecCCCCCCCCceeEEEEE-CCeEEEEEeCCCeEEEEEEcccCCCCCeEEEEEecCCCCeeEEEE
Q 047931 212 FVLAAFDLVEER-FKEFPLPDASTSFRFFGTGVL-GDCLCLQFFKGKMKEHWIMKEYGVKESWTRVFIHQDPNNVWPLCL 289 (339)
Q Consensus 212 ~~il~fD~~~~~-~~~i~lP~~~~~~~~~~l~~~-~G~L~~v~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~ 289 (339)
..+..+|.++.+ ...|+.... ....+... +|+..++...+..+.++.+.. ...+.+|....+..-+++
T Consensus 16 ~~v~viD~~t~~~~~~i~~~~~----~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~------~~~v~~i~~G~~~~~i~~ 85 (369)
T PF02239_consen 16 GSVAVIDGATNKVVARIPTGGA----PHAGLKFSPDGRYLYVANRDGTVSVIDLAT------GKVVATIKVGGNPRGIAV 85 (369)
T ss_dssp TEEEEEETTT-SEEEEEE-STT----EEEEEE-TT-SSEEEEEETTSEEEEEETTS------SSEEEEEE-SSEEEEEEE
T ss_pred CEEEEEECCCCeEEEEEcCCCC----ceeEEEecCCCCEEEEEcCCCeEEEEECCc------ccEEEEEecCCCcceEEE
Confidence 478888988755 455554322 12223333 677555555556888887775 225566655322445666
Q ss_pred EeCCeEEEEEC--CcEEEEEECCCCc-EEEeEE
Q 047931 290 WKNSTKLLVIN--RKNLLVCDCNNEG-SEDVAV 319 (339)
Q Consensus 290 ~~~~~i~~~~~--~~~~~~yd~~t~~-~~~v~~ 319 (339)
..+|+.++..+ ...+..+|.+|.+ .+.|..
T Consensus 86 s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~ 118 (369)
T PF02239_consen 86 SPDGKYVYVANYEPGTVSVIDAETLEPVKTIPT 118 (369)
T ss_dssp --TTTEEEEEEEETTEEEEEETTT--EEEEEE-
T ss_pred cCCCCEEEEEecCCCceeEeccccccceeeccc
Confidence 67887666543 4579999998877 445543
No 131
>PRK00178 tolB translocation protein TolB; Provisional
Probab=39.75 E-value=3.1e+02 Score=25.32 Aligned_cols=186 Identities=12% Similarity=-0.012 Sum_probs=91.7
Q ss_pred CEEEEEcccccceeecCCCCCCCCCCCCCCeeEEee-eCCceEEEEEeeEeCCCcEEEEEEeCCCceEEecccCCccCcc
Q 047931 112 KIFFVLNPLTRESKRIPDVPFEPFPRSSDDLYGFGC-TAEDCKFIKVSFGLKPNMSVAIFSLRMNSWRRVLASGYTRPLI 190 (339)
Q Consensus 112 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~-~~~~ykvv~~~~~~~~~~~~~vyss~~~~W~~~~~~~~~~~~~ 190 (339)
.++++.|..|++...+...+.. .....+ .++++-++... ..+...+.+++..++..+.+...+.. .
T Consensus 223 ~~l~~~~l~~g~~~~l~~~~g~--------~~~~~~SpDG~~la~~~~--~~g~~~Iy~~d~~~~~~~~lt~~~~~---~ 289 (430)
T PRK00178 223 PRIFVQNLDTGRREQITNFEGL--------NGAPAWSPDGSKLAFVLS--KDGNPEIYVMDLASRQLSRVTNHPAI---D 289 (430)
T ss_pred CEEEEEECCCCCEEEccCCCCC--------cCCeEECCCCCEEEEEEc--cCCCceEEEEECCCCCeEEcccCCCC---c
Confidence 4799999999988777544322 112233 22333332222 22345778888888888776432211 0
Q ss_pred CCCceEECC-eEEEEEecCCCCeEEEEEECCCceeeeecCCCCCCCCceeEEEEECCeEEEEEeCCCeEEEEEEcccCCC
Q 047931 191 NVPGTLTNG-ALHWRLQKHGGDFVLAAFDLVEERFKEFPLPDASTSFRFFGTGVLGDCLCLQFFKGKMKEHWIMKEYGVK 269 (339)
Q Consensus 191 ~~~~v~~~G-~lyw~~~~~~~~~~il~fD~~~~~~~~i~lP~~~~~~~~~~l~~~~G~L~~v~~~~~~l~iW~l~~~~~~ 269 (339)
......-+| .+++..... ....|..+|+.+.+.+.+....... .......-+..|++.........||.++-.+
T Consensus 290 ~~~~~spDg~~i~f~s~~~-g~~~iy~~d~~~g~~~~lt~~~~~~--~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~t-- 364 (430)
T PRK00178 290 TEPFWGKDGRTLYFTSDRG-GKPQIYKVNVNGGRAERVTFVGNYN--ARPRLSADGKTLVMVHRQDGNFHVAAQDLQR-- 364 (430)
T ss_pred CCeEECCCCCEEEEEECCC-CCceEEEEECCCCCEEEeecCCCCc--cceEECCCCCEEEEEEccCCceEEEEEECCC--
Confidence 111122355 355554332 2346777888877766653222111 1112222233444444344455666666321
Q ss_pred CCeEEEEEecCCCCeeEEEEEeCCe-EEEEECC---cEEEEEECCCCcEEEeE
Q 047931 270 ESWTRVFIHQDPNNVWPLCLWKNST-KLLVINR---KNLLVCDCNNEGSEDVA 318 (339)
Q Consensus 270 ~~W~~~~~i~~~~~~~~~~~~~~~~-i~~~~~~---~~~~~yd~~t~~~~~v~ 318 (339)
.....+.. ......| .+.+||+ +++.... ..++..+.+++..+.+.
T Consensus 365 g~~~~lt~--~~~~~~p-~~spdg~~i~~~~~~~g~~~l~~~~~~g~~~~~l~ 414 (430)
T PRK00178 365 GSVRILTD--TSLDESP-SVAPNGTMLIYATRQQGRGVLMLVSINGRVRLPLP 414 (430)
T ss_pred CCEEEccC--CCCCCCc-eECCCCCEEEEEEecCCceEEEEEECCCCceEECc
Confidence 22332211 1111234 4566775 4444322 35888898877666664
No 132
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=39.20 E-value=2.8e+02 Score=24.64 Aligned_cols=91 Identities=8% Similarity=-0.021 Sum_probs=43.8
Q ss_pred CcEEEEEEeCCC-ceEEecccCCccCccCCCceEECCeEEEEEecCCCCeEEEEEECCCceeeee--cCCCCCCCCceeE
Q 047931 164 NMSVAIFSLRMN-SWRRVLASGYTRPLINVPGTLTNGALHWRLQKHGGDFVLAAFDLVEERFKEF--PLPDASTSFRFFG 240 (339)
Q Consensus 164 ~~~~~vyss~~~-~W~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~il~fD~~~~~~~~i--~lP~~~~~~~~~~ 240 (339)
...+.||.+++. .-+.+... -. .....+.+|..-.++.+. ..|..+|..+...-.. .-+... ..+.
T Consensus 188 ~~~i~i~q~d~A~v~~~i~~~-~r----~l~~~~l~~~~L~vG~d~---~~i~~~D~ds~~~~~~~~AH~~RV---K~i~ 256 (362)
T KOG0294|consen 188 RNKIDIYQLDNASVFREIENP-KR----ILCATFLDGSELLVGGDN---EWISLKDTDSDTPLTEFLAHENRV---KDIA 256 (362)
T ss_pred ccEEEEEecccHhHhhhhhcc-cc----ceeeeecCCceEEEecCC---ceEEEeccCCCccceeeecchhhe---eeeE
Confidence 456888888763 33333222 10 111234445444444443 5788888876322111 111111 1122
Q ss_pred -EEEECCeEEEEEeCCCeEEEEEEcc
Q 047931 241 -TGVLGDCLCLQFFKGKMKEHWIMKE 265 (339)
Q Consensus 241 -l~~~~G~L~~v~~~~~~l~iW~l~~ 265 (339)
+..-++.+.+....+..+.||.++-
T Consensus 257 ~~~~~~~~~lvTaSSDG~I~vWd~~~ 282 (362)
T KOG0294|consen 257 SYTNPEHEYLVTASSDGFIKVWDIDM 282 (362)
T ss_pred EEecCCceEEEEeccCceEEEEEccc
Confidence 2222343333333888999999884
No 133
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=39.19 E-value=2.7e+02 Score=24.54 Aligned_cols=90 Identities=14% Similarity=0.053 Sum_probs=49.2
Q ss_pred eEEEEEECCCceeeeecCCCCCCCCceeEEEEECCeE--EEEEe-CCCeEEEEEEcccCCCCCeEEEEEecCCCCeeEEE
Q 047931 212 FVLAAFDLVEERFKEFPLPDASTSFRFFGTGVLGDCL--CLQFF-KGKMKEHWIMKEYGVKESWTRVFIHQDPNNVWPLC 288 (339)
Q Consensus 212 ~~il~fD~~~~~~~~i~lP~~~~~~~~~~l~~~~G~L--~~v~~-~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~ 288 (339)
..+-.+|+.+++-+.+......- ..+--.+|-+ |++++ -+++|..|.++.. ..+.++.++ .+..+
T Consensus 94 k~~k~wDL~S~Q~~~v~~Hd~pv----kt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~------~pv~t~~LP--eRvYa 161 (347)
T KOG0647|consen 94 KQAKLWDLASGQVSQVAAHDAPV----KTCHWVPGMNYQCLVTGSWDKTLKFWDTRSS------NPVATLQLP--ERVYA 161 (347)
T ss_pred CceEEEEccCCCeeeeeecccce----eEEEEecCCCcceeEecccccceeecccCCC------Ceeeeeecc--ceeee
Confidence 47888999999888775433321 1122234444 77777 6889999998852 234555543 12233
Q ss_pred EEeCCeEEE-EECCcEEEEEECCCCc
Q 047931 289 LWKNSTKLL-VINRKNLLVCDCNNEG 313 (339)
Q Consensus 289 ~~~~~~i~~-~~~~~~~~~yd~~t~~ 313 (339)
..-...+++ ...+..+.+||+++..
T Consensus 162 ~Dv~~pm~vVata~r~i~vynL~n~~ 187 (347)
T KOG0647|consen 162 ADVLYPMAVVATAERHIAVYNLENPP 187 (347)
T ss_pred hhccCceeEEEecCCcEEEEEcCCCc
Confidence 222222222 2334456677765443
No 134
>PF06058 DCP1: Dcp1-like decapping family; InterPro: IPR010334 An essential step in mRNA turnover is decapping. In yeast, two proteins have been identified that are essential for decapping, Dcp1 (this family) and Dcp2 (IPR007722 from INTERPRO). The precise role of these proteins in the decapping reaction has not been established. Evidence suggests that the Dcp1 may enhance the function of Dcp2 [].; PDB: 1Q67_A 2QKM_C 2QKL_A.
Probab=38.85 E-value=52 Score=24.60 Aligned_cols=27 Identities=11% Similarity=0.034 Sum_probs=21.0
Q ss_pred EEEEECCcEEEEEECCCCcEEEeEEeC
Q 047931 295 KLLVINRKNLLVCDCNNEGSEDVAVAD 321 (339)
Q Consensus 295 i~~~~~~~~~~~yd~~t~~~~~v~~~~ 321 (339)
|+.....-.++.||.++++|++.++.|
T Consensus 22 Il~~a~~v~vY~f~~~~~~W~K~~iEG 48 (122)
T PF06058_consen 22 ILDTASHVVVYKFDHETNEWEKTDIEG 48 (122)
T ss_dssp EEEEEEEEEEEEEETTTTEEEEEEEEE
T ss_pred HHhhCCeEEEEeecCCCCcEeecCcEe
Confidence 555554445888889999999999987
No 135
>PF15408 PH_7: Pleckstrin homology domain
Probab=37.66 E-value=4.7 Score=27.60 Aligned_cols=24 Identities=29% Similarity=0.641 Sum_probs=19.3
Q ss_pred cccceeeeeccccccccCCChHHH
Q 047931 18 VKSLCRFKCVSSSWLALISDPQFV 41 (339)
Q Consensus 18 ~~~l~r~~~VcK~W~~li~sp~F~ 41 (339)
++.++..+-|||+|-..+.+|+|.
T Consensus 76 ~~~FA~S~~~~~~Wi~~mN~~s~~ 99 (104)
T PF15408_consen 76 VQCFASSKKVCQSWIQVMNSPSFR 99 (104)
T ss_pred hhhhhhHHHHHHHHHHHhcChhhh
Confidence 344556678999999999999985
No 136
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=37.31 E-value=4.2e+02 Score=26.22 Aligned_cols=87 Identities=16% Similarity=0.169 Sum_probs=52.6
Q ss_pred eEEEEEECCCceeeeecCCCCCCCCceeEEE-EECCeEEEEEeCCCeEEEEEEcccCCCCCeEEEEEecCC-CCeeEEEE
Q 047931 212 FVLAAFDLVEERFKEFPLPDASTSFRFFGTG-VLGDCLCLQFFKGKMKEHWIMKEYGVKESWTRVFIHQDP-NNVWPLCL 289 (339)
Q Consensus 212 ~~il~fD~~~~~~~~i~lP~~~~~~~~~~l~-~~~G~L~~v~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~-~~~~~~~~ 289 (339)
..|.--|+..|....+..... +...+. ..++.+.+.+..+.++.||.-++ ....|..| ..++-..+
T Consensus 200 g~Ir~w~~~ge~l~~~~ghtn----~vYsis~~~~~~~Ivs~gEDrtlriW~~~e--------~~q~I~lPttsiWsa~~ 267 (745)
T KOG0301|consen 200 GSIRLWDLDGEVLLEMHGHTN----FVYSISMALSDGLIVSTGEDRTLRIWKKDE--------CVQVITLPTTSIWSAKV 267 (745)
T ss_pred ceEEEEeccCceeeeeeccce----EEEEEEecCCCCeEEEecCCceEEEeecCc--------eEEEEecCccceEEEEE
Confidence 345555555554444332111 233344 45778888888999999998773 23445443 23556666
Q ss_pred EeCCeEEEEECCcEEEEEECC
Q 047931 290 WKNSTKLLVINRKNLLVCDCN 310 (339)
Q Consensus 290 ~~~~~i~~~~~~~~~~~yd~~ 310 (339)
..||+|+..+.++.+.+|-.+
T Consensus 268 L~NgDIvvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 268 LLNGDIVVGGSDGRVRVFTVD 288 (745)
T ss_pred eeCCCEEEeccCceEEEEEec
Confidence 678888888877766666544
No 137
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=36.99 E-value=3.6e+02 Score=25.32 Aligned_cols=136 Identities=10% Similarity=-0.005 Sum_probs=76.9
Q ss_pred CcEEEEEEeCCCceEE-ecccCCccCccCCCceEECCeEEEEEecCCCCeEEEEEECCCcee-eeecCCCCCCCCceeEE
Q 047931 164 NMSVAIFSLRMNSWRR-VLASGYTRPLINVPGTLTNGALHWRLQKHGGDFVLAAFDLVEERF-KEFPLPDASTSFRFFGT 241 (339)
Q Consensus 164 ~~~~~vyss~~~~W~~-~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~il~fD~~~~~~-~~i~lP~~~~~~~~~~l 241 (339)
..++.+|++.+..=+. +..+.... .+.....+|.+...+... ..|-.||+.+... +.+.-....- .....
T Consensus 47 S~rvqly~~~~~~~~k~~srFk~~v---~s~~fR~DG~LlaaGD~s---G~V~vfD~k~r~iLR~~~ah~apv--~~~~f 118 (487)
T KOG0310|consen 47 SVRVQLYSSVTRSVRKTFSRFKDVV---YSVDFRSDGRLLAAGDES---GHVKVFDMKSRVILRQLYAHQAPV--HVTKF 118 (487)
T ss_pred ccEEEEEecchhhhhhhHHhhccce---eEEEeecCCeEEEccCCc---CcEEEeccccHHHHHHHhhccCce--eEEEe
Confidence 6689999998754322 22221111 011234569998877664 5788999665221 2221110000 11233
Q ss_pred EEECCeEEEEEeCCCeEEEEEEcccCCCCCeEEEEEecC-CCCeeEEEEEeC-CeEEEEEC-CcEEEEEECCCCc
Q 047931 242 GVLGDCLCLQFFKGKMKEHWIMKEYGVKESWTRVFIHQD-PNNVWPLCLWKN-STKLLVIN-RKNLLVCDCNNEG 313 (339)
Q Consensus 242 ~~~~G~L~~v~~~~~~l~iW~l~~~~~~~~W~~~~~i~~-~~~~~~~~~~~~-~~i~~~~~-~~~~~~yd~~t~~ 313 (339)
...++.+++.+.++....+|.+... . + +..+.. ...++-.++.+. +.+++..+ ++.+-.||.++.+
T Consensus 119 ~~~d~t~l~s~sDd~v~k~~d~s~a---~--v-~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~ 187 (487)
T KOG0310|consen 119 SPQDNTMLVSGSDDKVVKYWDLSTA---Y--V-QAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLT 187 (487)
T ss_pred cccCCeEEEecCCCceEEEEEcCCc---E--E-EEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCC
Confidence 4457777777778999999999862 2 3 445543 233555555553 34666543 5579999999886
No 138
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=36.86 E-value=3.7e+02 Score=25.42 Aligned_cols=108 Identities=10% Similarity=-0.022 Sum_probs=0.0
Q ss_pred ECCeEEEEEecCCCCeEEEEEECCCceeeeecCCCCCCCCceeEEEEECCeEEEEEeCCCeEEEEEEcccCCCCCeEEEE
Q 047931 197 TNGALHWRLQKHGGDFVLAAFDLVEERFKEFPLPDASTSFRFFGTGVLGDCLCLQFFKGKMKEHWIMKEYGVKESWTRVF 276 (339)
Q Consensus 197 ~~G~lyw~~~~~~~~~~il~fD~~~~~~~~i~lP~~~~~~~~~~l~~~~G~L~~v~~~~~~l~iW~l~~~~~~~~W~~~~ 276 (339)
++|-++-+...+ -...++.-..-.-.+.-+... ...+.......+.+...++..+.|...+. .++.
T Consensus 330 ~~Gd~ia~VSRG----kaFi~~~~~~~~iqv~~~~~V---rY~r~~~~~e~~vigt~dgD~l~iyd~~~-------~e~k 395 (668)
T COG4946 330 VNGDYIALVSRG----KAFIMRPWDGYSIQVGKKGGV---RYRRIQVDPEGDVIGTNDGDKLGIYDKDG-------GEVK 395 (668)
T ss_pred CCCcEEEEEecC----cEEEECCCCCeeEEcCCCCce---EEEEEccCCcceEEeccCCceEEEEecCC-------ceEE
Q ss_pred EecCCCC-eeEEEEEeCCe-EEEEECCcEEEEEECCCCcEEEeE
Q 047931 277 IHQDPNN-VWPLCLWKNST-KLLVINRKNLLVCDCNNEGSEDVA 318 (339)
Q Consensus 277 ~i~~~~~-~~~~~~~~~~~-i~~~~~~~~~~~yd~~t~~~~~v~ 318 (339)
++...+| +-.+++..+|+ +++..+...+.++|.+|+..+.+.
T Consensus 396 r~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~id 439 (668)
T COG4946 396 RIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLID 439 (668)
T ss_pred EeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEec
No 139
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=36.38 E-value=3.7e+02 Score=26.81 Aligned_cols=95 Identities=14% Similarity=0.141 Sum_probs=55.3
Q ss_pred EEEEEECCCceeeeecCCCCCC---CCceeEEEEECCeEEEEEeCCCeEEEEEEcccCCCCCeEEEEEecCCCCeeEEEE
Q 047931 213 VLAAFDLVEERFKEFPLPDAST---SFRFFGTGVLGDCLCLQFFKGKMKEHWIMKEYGVKESWTRVFIHQDPNNVWPLCL 289 (339)
Q Consensus 213 ~il~fD~~~~~~~~i~lP~~~~---~~~~~~l~~~~G~L~~v~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~ 289 (339)
.|...|.++.+.. +|.... +.......+.++...+......-+.+|.++....-.+|.-.++=| ...+++
T Consensus 41 ~Vi~idv~t~~~~---l~s~~~ed~d~ita~~l~~d~~~L~~a~rs~llrv~~L~tgk~irswKa~He~P----vi~ma~ 113 (775)
T KOG0319|consen 41 RVIIIDVATGSIA---LPSGSNEDEDEITALALTPDEEVLVTASRSQLLRVWSLPTGKLIRSWKAIHEAP----VITMAF 113 (775)
T ss_pred eEEEEEccCCcee---cccCCccchhhhheeeecCCccEEEEeeccceEEEEEcccchHhHhHhhccCCC----eEEEEE
Confidence 6888999998876 443322 112222334466555555588889999999643334665433322 345566
Q ss_pred EeCCeEEEEEC--CcEEEEEECCCCcEE
Q 047931 290 WKNSTKLLVIN--RKNLLVCDCNNEGSE 315 (339)
Q Consensus 290 ~~~~~i~~~~~--~~~~~~yd~~t~~~~ 315 (339)
.+.| .++..+ +..+-+||.+.+...
T Consensus 114 ~~~g-~LlAtggaD~~v~VWdi~~~~~t 140 (775)
T KOG0319|consen 114 DPTG-TLLATGGADGRVKVWDIKNGYCT 140 (775)
T ss_pred cCCC-ceEEeccccceEEEEEeeCCEEE
Confidence 6655 333332 345778887777654
No 140
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=35.75 E-value=2.8e+02 Score=23.77 Aligned_cols=178 Identities=14% Similarity=0.061 Sum_probs=89.9
Q ss_pred CCEEEEEcccccce-eecCCCCCCCCCCCCCCeeEEeeeCCceEEEEEeeEeCCCcEEEEEEeCCCceEEecccCCccCc
Q 047931 111 PKIFFVLNPLTRES-KRIPDVPFEPFPRSSDDLYGFGCTAEDCKFIKVSFGLKPNMSVAIFSLRMNSWRRVLASGYTRPL 189 (339)
Q Consensus 111 ~~~~~V~NP~T~~~-~~LP~~~~~~~~~~~~~~~~~g~~~~~ykvv~~~~~~~~~~~~~vyss~~~~W~~~~~~~~~~~~ 189 (339)
+..+-+|--.||.+ +.++-+... .-.+......-.+.+.. ...+.+|+..++.=.++...... .
T Consensus 19 DhTIRfWqa~tG~C~rTiqh~dsq--------VNrLeiTpdk~~LAaa~-----~qhvRlyD~~S~np~Pv~t~e~h--~ 83 (311)
T KOG0315|consen 19 DHTIRFWQALTGICSRTIQHPDSQ--------VNRLEITPDKKDLAAAG-----NQHVRLYDLNSNNPNPVATFEGH--T 83 (311)
T ss_pred cceeeeeehhcCeEEEEEecCccc--------eeeEEEcCCcchhhhcc-----CCeeEEEEccCCCCCceeEEecc--C
Confidence 45666777777765 333333322 23343311112222222 45788999888654333221111 1
Q ss_pred cCCCceEECCeEEEEEecCCCCeEEEEEECCCceeeee-cCCCCCCCCceeEEEEECCeEEEEEeCCCeEEEEEEcccCC
Q 047931 190 INVPGTLTNGALHWRLQKHGGDFVLAAFDLVEERFKEF-PLPDASTSFRFFGTGVLGDCLCLQFFKGKMKEHWIMKEYGV 268 (339)
Q Consensus 190 ~~~~~v~~~G~lyw~~~~~~~~~~il~fD~~~~~~~~i-~lP~~~~~~~~~~l~~~~G~L~~v~~~~~~l~iW~l~~~~~ 268 (339)
..-.+|-+.-.=.|+...+ .+..+-.-|++.-..+.. ..|.... ...+---++.|. ++.....+.||.|.+..-
T Consensus 84 kNVtaVgF~~dgrWMyTgs-eDgt~kIWdlR~~~~qR~~~~~spVn---~vvlhpnQteLi-s~dqsg~irvWDl~~~~c 158 (311)
T KOG0315|consen 84 KNVTAVGFQCDGRWMYTGS-EDGTVKIWDLRSLSCQRNYQHNSPVN---TVVLHPNQTELI-SGDQSGNIRVWDLGENSC 158 (311)
T ss_pred CceEEEEEeecCeEEEecC-CCceEEEEeccCcccchhccCCCCcc---eEEecCCcceEE-eecCCCcEEEEEccCCcc
Confidence 1222344444445554442 235777888887554433 4443332 111111244443 344678899999987321
Q ss_pred CCCeEEEEEecCC-CCeeEEEEEeCCeEEEEEC-CcEEEEEECCCCc
Q 047931 269 KESWTRVFIHQDP-NNVWPLCLWKNSTKLLVIN-RKNLLVCDCNNEG 313 (339)
Q Consensus 269 ~~~W~~~~~i~~~-~~~~~~~~~~~~~i~~~~~-~~~~~~yd~~t~~ 313 (339)
.. .-|+.. ..++-+.+..+|..+...+ .+.++++++-+.+
T Consensus 159 ----~~-~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~ 200 (311)
T KOG0315|consen 159 ----TH-ELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQ 200 (311)
T ss_pred ----cc-ccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCC
Confidence 10 112221 1267778888887666554 4469999987654
No 141
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=35.34 E-value=2.7e+02 Score=23.44 Aligned_cols=135 Identities=12% Similarity=0.066 Sum_probs=64.2
Q ss_pred CcEEEEEEeCCCceEEecccCCccCccCCCceEECCeEEEEEecCCCCeEEEEEECCCce-eeeecCCCCCCCCceeEEE
Q 047931 164 NMSVAIFSLRMNSWRRVLASGYTRPLINVPGTLTNGALHWRLQKHGGDFVLAAFDLVEER-FKEFPLPDASTSFRFFGTG 242 (339)
Q Consensus 164 ~~~~~vyss~~~~W~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~il~fD~~~~~-~~~i~lP~~~~~~~~~~l~ 242 (339)
...+.+|+..++..... ++..... ..-.+.-+|...+++... ...+..+|+++.+ ...++.+... ..+.
T Consensus 52 ~~~v~~~d~~~~~~~~~--~~~~~~~-~~~~~~~~g~~l~~~~~~--~~~l~~~d~~~~~~~~~~~~~~~~-----~~~~ 121 (300)
T TIGR03866 52 SDTIQVIDLATGEVIGT--LPSGPDP-ELFALHPNGKILYIANED--DNLVTVIDIETRKVLAEIPVGVEP-----EGMA 121 (300)
T ss_pred CCeEEEEECCCCcEEEe--ccCCCCc-cEEEECCCCCEEEEEcCC--CCeEEEEECCCCeEEeEeeCCCCc-----ceEE
Confidence 44677888877655332 1111000 010122245433343321 1378889998754 2333322111 1122
Q ss_pred E-ECCeEEEEEeC-CCeEEEEEEcccCCCCCeEEEEEecCCCCeeEEEEEeCCeEEEEEC--CcEEEEEECCCCcE
Q 047931 243 V-LGDCLCLQFFK-GKMKEHWIMKEYGVKESWTRVFIHQDPNNVWPLCLWKNSTKLLVIN--RKNLLVCDCNNEGS 314 (339)
Q Consensus 243 ~-~~G~L~~v~~~-~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~i~~~~~--~~~~~~yd~~t~~~ 314 (339)
. -+|.+.++... ...+.+|.++. ......+...-....+++.++|..++... +..+..||+++.+.
T Consensus 122 ~~~dg~~l~~~~~~~~~~~~~d~~~------~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~ 191 (300)
T TIGR03866 122 VSPDGKIVVNTSETTNMAHFIDTKT------YEIVDNVLVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKV 191 (300)
T ss_pred ECCCCCEEEEEecCCCeEEEEeCCC------CeEEEEEEcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCccee
Confidence 2 26777666653 33444444432 22222332211123356667776555432 45799999998764
No 142
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=34.77 E-value=2.2e+02 Score=24.99 Aligned_cols=65 Identities=9% Similarity=0.029 Sum_probs=41.9
Q ss_pred CCeEEEEEeCCCeEEEEEEcccCCCCCeEEEEEecCCCCeeEEEEE--eCCeEEEEE-CCcEEEEEECCCCcEE
Q 047931 245 GDCLCLQFFKGKMKEHWIMKEYGVKESWTRVFIHQDPNNVWPLCLW--KNSTKLLVI-NRKNLLVCDCNNEGSE 315 (339)
Q Consensus 245 ~G~L~~v~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~--~~~~i~~~~-~~~~~~~yd~~t~~~~ 315 (339)
+|.+++....+..+-+|...++. +.-|.+. ..- ..++.+. .++..++.+ .++.+..||.+|++-.
T Consensus 58 ~gs~~aSgG~Dr~I~LWnv~gdc-eN~~~lk----gHs-gAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~ 125 (338)
T KOG0265|consen 58 DGSCFASGGSDRAIVLWNVYGDC-ENFWVLK----GHS-GAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRI 125 (338)
T ss_pred CCCeEeecCCcceEEEEeccccc-cceeeec----ccc-ceeEeeeeccCCCEEEEecCCceEEEEecccceee
Confidence 77776666678889999965433 2457665 111 3344443 366666655 5667999999999843
No 143
>cd00260 Sialidase Sialidases or neuraminidases function to bind and hydrolyze terminal sialic acid residues from various glycoconjugates as well as playing roles in pathogenesis, bacterial nutrition and cellular interactions. They have a six-bladed, beta-propeller fold with the non-viral sialidases containing 2-5 Asp-box motifs (most commonly Ser/Thr-X-Asp-[X]-Gly-X-Thr- Trp/Phe). This CD includes eubacterial, eukaryotic, and viral sialidases.
Probab=34.25 E-value=3.4e+02 Score=24.17 Aligned_cols=84 Identities=12% Similarity=0.065 Sum_probs=49.8
Q ss_pred CceEE-CCeEEEEEecC-C---CCeEEEEEECCCceeeeecCCCCCCCCceeEEEEE-CCeEEEEEe-C-CCeEEEEEEc
Q 047931 193 PGTLT-NGALHWRLQKH-G---GDFVLAAFDLVEERFKEFPLPDASTSFRFFGTGVL-GDCLCLQFF-K-GKMKEHWIMK 264 (339)
Q Consensus 193 ~~v~~-~G~lyw~~~~~-~---~~~~il~fD~~~~~~~~i~lP~~~~~~~~~~l~~~-~G~L~~v~~-~-~~~l~iW~l~ 264 (339)
.++.+ +|.+....... . ....++..|-..++|+....+..........+.++ +|+|.++.. . .....+..-.
T Consensus 150 ~gi~l~~Grlv~p~~~~~~~~~~~~~~~~S~D~G~tW~~~~~~~~~~~~~e~~i~el~dG~l~~~~R~~~~~~~~~~~S~ 229 (351)
T cd00260 150 SGIQMKDGRLVFPVYGGNAGGRVSSAIIYSDDSGKTWKLGEGVNDAGGCSECSVVELSDGKLYMYTRDNSGGRRPVYESR 229 (351)
T ss_pred CeEEecCCcEEEEEEEEcCCCCEEEEEEEECCCCCCcEECCCCCCCCCCcCCEEEEecCCEEEEEEeeCCCCcEEEEEEc
Confidence 35666 48887765543 1 12344555555678986544433111235677888 999998877 3 3555555555
Q ss_pred ccCCCCCeEEEEEe
Q 047931 265 EYGVKESWTRVFIH 278 (339)
Q Consensus 265 ~~~~~~~W~~~~~i 278 (339)
|. +.+|......
T Consensus 230 D~--G~tWs~~~~~ 241 (351)
T cd00260 230 DM--GTTWTEALGT 241 (351)
T ss_pred CC--CcCcccCcCC
Confidence 43 4789987543
No 144
>PF10902 DUF2693: Protein of unknown function (DUF2693); InterPro: IPR024401 This family of proteins is found in bacteria and bacteriophages. Its function is unknown.
Probab=32.63 E-value=41 Score=23.17 Aligned_cols=19 Identities=11% Similarity=0.266 Sum_probs=16.1
Q ss_pred EEEEEECCCCcEEEeEEeC
Q 047931 303 NLLVCDCNNEGSEDVAVAD 321 (339)
Q Consensus 303 ~~~~yd~~t~~~~~v~~~~ 321 (339)
.+.+||.+.+.|+-..+.+
T Consensus 50 s~~yfDve~~~WRSFk~dn 68 (83)
T PF10902_consen 50 SVRYFDVEKKGWRSFKIDN 68 (83)
T ss_pred eEEEEEeccCceeeeehee
Confidence 4999999999999887653
No 145
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=32.53 E-value=5.2e+02 Score=25.83 Aligned_cols=189 Identities=14% Similarity=0.121 Sum_probs=94.5
Q ss_pred EEeeeCceEEEccCCCEEEEEcccccceeecCCCCCCCCCCCCCCeeEEeeeCCceEEEEEeeEeCCCcEEEEEEeCCC-
Q 047931 97 IVGSCNGLVCTTPKPKIFFVLNPLTRESKRIPDVPFEPFPRSSDDLYGFGCTAEDCKFIKVSFGLKPNMSVAIFSLRMN- 175 (339)
Q Consensus 97 ~~~s~~GLl~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~~~~~ykvv~~~~~~~~~~~~~vyss~~~- 175 (339)
+.=+.||=.+.+...+.+.+..-.|++.. +|..... -.....++....++-+++.+. ...-.++|+..++
T Consensus 25 ~~~s~nG~~L~t~~~d~Vi~idv~t~~~~-l~s~~~e----d~d~ita~~l~~d~~~L~~a~----rs~llrv~~L~tgk 95 (775)
T KOG0319|consen 25 VAWSSNGQHLYTACGDRVIIIDVATGSIA-LPSGSNE----DEDEITALALTPDEEVLVTAS----RSQLLRVWSLPTGK 95 (775)
T ss_pred eeECCCCCEEEEecCceEEEEEccCCcee-cccCCcc----chhhhheeeecCCccEEEEee----ccceEEEEEcccch
Confidence 44566776655544566777778888765 6554433 111133444422233333332 1557889998875
Q ss_pred ---ceEEecccCCccCccCCCceEECCeEEEEEecCCCCeEEEEEECCCceeee-ecC-CCCCCCCceeEEEEE----CC
Q 047931 176 ---SWRRVLASGYTRPLINVPGTLTNGALHWRLQKHGGDFVLAAFDLVEERFKE-FPL-PDASTSFRFFGTGVL----GD 246 (339)
Q Consensus 176 ---~W~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~il~fD~~~~~~~~-i~l-P~~~~~~~~~~l~~~----~G 246 (339)
.|+.+-.-|.- .+.+++.-.-++..+ ....+.+-|...+.... +.. |... ..... .-
T Consensus 96 ~irswKa~He~Pvi-------~ma~~~~g~LlAtgg-aD~~v~VWdi~~~~~th~fkG~gGvV------ssl~F~~~~~~ 161 (775)
T KOG0319|consen 96 LIRSWKAIHEAPVI-------TMAFDPTGTLLATGG-ADGRVKVWDIKNGYCTHSFKGHGGVV------SSLLFHPHWNR 161 (775)
T ss_pred HhHhHhhccCCCeE-------EEEEcCCCceEEecc-ccceEEEEEeeCCEEEEEecCCCceE------EEEEeCCccch
Confidence 67775332221 122333333333332 23466677766654432 221 2221 11111 11
Q ss_pred eEEEEEeCCCeEEEEEEcccCCCCCeEEEEEecCCC-CeeEEEEEeCCe-EEEEECCcEEEEEECCCCc
Q 047931 247 CLCLQFFKGKMKEHWIMKEYGVKESWTRVFIHQDPN-NVWPLCLWKNST-KLLVINRKNLLVCDCNNEG 313 (339)
Q Consensus 247 ~L~~v~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~-~~~~~~~~~~~~-i~~~~~~~~~~~yd~~t~~ 313 (339)
.|.+.+..+..+.+|.+++. .+ ..+++.... ...-+++..++. ++....++-+.+||+.+-+
T Consensus 162 ~lL~sg~~D~~v~vwnl~~~---~t--cl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~ 225 (775)
T KOG0319|consen 162 WLLASGATDGTVRVWNLNDK---RT--CLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYK 225 (775)
T ss_pred hheeecCCCceEEEEEcccC---ch--HHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhh
Confidence 23333336778888888852 21 112222211 155667776664 4445556668899985544
No 146
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=32.48 E-value=3.6e+02 Score=24.00 Aligned_cols=51 Identities=8% Similarity=-0.083 Sum_probs=32.0
Q ss_pred eEEEEEECCCceeeeecCCCCCCCCceeEEEEE-CCeEEEEEeCCCeEEEEEEcc
Q 047931 212 FVLAAFDLVEERFKEFPLPDASTSFRFFGTGVL-GDCLCLQFFKGKMKEHWIMKE 265 (339)
Q Consensus 212 ~~il~fD~~~~~~~~i~lP~~~~~~~~~~l~~~-~G~L~~v~~~~~~l~iW~l~~ 265 (339)
..++.+|+.|.....+-. ... .....|+-+ +|++.+....+..+.+|.+-+
T Consensus 45 G~vvI~D~~T~~iar~ls-aH~--~pi~sl~WS~dgr~LltsS~D~si~lwDl~~ 96 (405)
T KOG1273|consen 45 GRVVIYDFDTFRIARMLS-AHV--RPITSLCWSRDGRKLLTSSRDWSIKLWDLLK 96 (405)
T ss_pred CcEEEEEccccchhhhhh-ccc--cceeEEEecCCCCEeeeecCCceeEEEeccC
Confidence 589999998876443311 111 022244444 888877777888888898864
No 147
>PF13854 Kelch_5: Kelch motif
Probab=31.89 E-value=1.1e+02 Score=17.62 Aligned_cols=27 Identities=7% Similarity=0.083 Sum_probs=17.6
Q ss_pred eeEEEEECCeEEEEEeCC---C--eEEEEEEc
Q 047931 238 FFGTGVLGDCLCLQFFKG---K--MKEHWIMK 264 (339)
Q Consensus 238 ~~~l~~~~G~L~~v~~~~---~--~l~iW~l~ 264 (339)
....+..+++|++..... . .=++|+++
T Consensus 7 ~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~ 38 (42)
T PF13854_consen 7 GHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLD 38 (42)
T ss_pred ceEEEEECCEEEEEcCccCCCCCEECcEEEEE
Confidence 455667789999998822 1 23566665
No 148
>PF14157 YmzC: YmzC-like protein; PDB: 3KVP_E.
Probab=31.20 E-value=74 Score=20.51 Aligned_cols=15 Identities=7% Similarity=0.009 Sum_probs=13.3
Q ss_pred EEEEEECCCCcEEEe
Q 047931 303 NLLVCDCNNEGSEDV 317 (339)
Q Consensus 303 ~~~~yd~~t~~~~~v 317 (339)
++|.||++|++++-+
T Consensus 42 KIfkyd~~tNei~L~ 56 (63)
T PF14157_consen 42 KIFKYDEDTNEITLK 56 (63)
T ss_dssp EEEEEETTTTEEEEE
T ss_pred EEEEeCCCCCeEEEE
Confidence 699999999998765
No 149
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=30.89 E-value=3.8e+02 Score=23.71 Aligned_cols=155 Identities=15% Similarity=0.161 Sum_probs=0.0
Q ss_pred EEEeCC--CceEEecccCCccCccCCCceEECCeEEEEEecCCCCeEEEEEECCCceeeeecCCCCCCCCceeEEEEE-C
Q 047931 169 IFSLRM--NSWRRVLASGYTRPLINVPGTLTNGALHWRLQKHGGDFVLAAFDLVEERFKEFPLPDASTSFRFFGTGVL-G 245 (339)
Q Consensus 169 vyss~~--~~W~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~il~fD~~~~~~~~i~lP~~~~~~~~~~l~~~-~ 245 (339)
||.+.+ ..|+.+..-... ....-...-+|.+.-+...+ ...+..|.....|+....+... .--.++-. +
T Consensus 126 iy~T~DgG~tW~~~~~~~~g--s~~~~~r~~dG~~vavs~~G---~~~~s~~~G~~~w~~~~r~~~~---riq~~gf~~~ 197 (302)
T PF14870_consen 126 IYRTTDGGKTWQAVVSETSG--SINDITRSSDGRYVAVSSRG---NFYSSWDPGQTTWQPHNRNSSR---RIQSMGFSPD 197 (302)
T ss_dssp EEEESSTTSSEEEEE-S------EEEEEE-TTS-EEEEETTS---SEEEEE-TT-SS-EEEE--SSS----EEEEEE-TT
T ss_pred EEEeCCCCCCeeEcccCCcc--eeEeEEECCCCcEEEEECcc---cEEEEecCCCccceEEccCccc---eehhceecCC
Q ss_pred CeEEEEEeCCCeEEEEEEcccCCCCCeEEEEEecC--CCCeeEEEEEeCCeEEEEECCcEEEEEECCCCcEEEeE-EeCC
Q 047931 246 DCLCLQFFKGKMKEHWIMKEYGVKESWTRVFIHQD--PNNVWPLCLWKNSTKLLVINRKNLLVCDCNNEGSEDVA-VADV 322 (339)
Q Consensus 246 G~L~~v~~~~~~l~iW~l~~~~~~~~W~~~~~i~~--~~~~~~~~~~~~~~i~~~~~~~~~~~yd~~t~~~~~v~-~~~~ 322 (339)
|.|.|+. ....+..=...+.. ++|.+...-.. ..++.-++...++++......+.+++=.-..++|++.+ ....
T Consensus 198 ~~lw~~~-~Gg~~~~s~~~~~~--~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l~~S~DgGktW~~~~~~~~~ 274 (302)
T PF14870_consen 198 GNLWMLA-RGGQIQFSDDPDDG--ETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSGTLLVSTDGGKTWQKDRVGENV 274 (302)
T ss_dssp S-EEEEE-TTTEEEEEE-TTEE--EEE---B-TTSS--S-EEEEEESSSS-EEEEESTT-EEEESSTTSS-EE-GGGTTS
T ss_pred CCEEEEe-CCcEEEEccCCCCc--cccccccCCcccCceeeEEEEecCCCCEEEEeCCccEEEeCCCCccceECccccCC
Q ss_pred CCccceeEEecC
Q 047931 323 PNWNSACVYVES 334 (339)
Q Consensus 323 ~~~~~~~~y~~s 334 (339)
+..+..+.|...
T Consensus 275 ~~n~~~i~f~~~ 286 (302)
T PF14870_consen 275 PSNLYRIVFVNP 286 (302)
T ss_dssp SS---EEEEEET
T ss_pred CCceEEEEEcCC
No 150
>PRK05137 tolB translocation protein TolB; Provisional
Probab=30.37 E-value=4.5e+02 Score=24.39 Aligned_cols=185 Identities=10% Similarity=0.025 Sum_probs=89.1
Q ss_pred CEEEEEcccccceeecCCCCCCCCCCCCCCeeEEeeeCCceEEEEEeeEeCCCcEEEEEEeCCCceEEecccCCccCccC
Q 047931 112 KIFFVLNPLTRESKRIPDVPFEPFPRSSDDLYGFGCTAEDCKFIKVSFGLKPNMSVAIFSLRMNSWRRVLASGYTRPLIN 191 (339)
Q Consensus 112 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~~~~~ykvv~~~~~~~~~~~~~vyss~~~~W~~~~~~~~~~~~~~ 191 (339)
.++++++.-++..+.+...... .....+..+.=+++.+. ...+...+.+++..++..+.+...+... .
T Consensus 182 ~~l~~~d~dg~~~~~lt~~~~~--------v~~p~wSpDG~~lay~s-~~~g~~~i~~~dl~~g~~~~l~~~~g~~---~ 249 (435)
T PRK05137 182 KRLAIMDQDGANVRYLTDGSSL--------VLTPRFSPNRQEITYMS-YANGRPRVYLLDLETGQRELVGNFPGMT---F 249 (435)
T ss_pred eEEEEECCCCCCcEEEecCCCC--------eEeeEECCCCCEEEEEE-ecCCCCEEEEEECCCCcEEEeecCCCcc---c
Confidence 4788888766655555432221 22233321222344333 2234567888999888887775443211 1
Q ss_pred CCceEECCe-EEEEEecCCCCeEEEEEECCCceeeeec-CCCCCCCCceeEEEEECCe-EEEEEeCCCeEEEEEEcccCC
Q 047931 192 VPGTLTNGA-LHWRLQKHGGDFVLAAFDLVEERFKEFP-LPDASTSFRFFGTGVLGDC-LCLQFFKGKMKEHWIMKEYGV 268 (339)
Q Consensus 192 ~~~v~~~G~-lyw~~~~~~~~~~il~fD~~~~~~~~i~-lP~~~~~~~~~~l~~~~G~-L~~v~~~~~~l~iW~l~~~~~ 268 (339)
.....-+|. +.+..... ....|..+|+++.+.+.+. .+... ...... -+|+ |++........+||.++-.+
T Consensus 250 ~~~~SPDG~~la~~~~~~-g~~~Iy~~d~~~~~~~~Lt~~~~~~---~~~~~s-pDG~~i~f~s~~~g~~~Iy~~d~~g- 323 (435)
T PRK05137 250 APRFSPDGRKVVMSLSQG-GNTDIYTMDLRSGTTTRLTDSPAID---TSPSYS-PDGSQIVFESDRSGSPQLYVMNADG- 323 (435)
T ss_pred CcEECCCCCEEEEEEecC-CCceEEEEECCCCceEEccCCCCcc---CceeEc-CCCCEEEEEECCCCCCeEEEEECCC-
Confidence 122334564 44433322 2346777898887766542 22111 111111 2554 44444344445777776432
Q ss_pred CCCeEEEEEecCCCCeeEEEEEeCCe-EEEEECC---cEEEEEECCCCcEEEe
Q 047931 269 KESWTRVFIHQDPNNVWPLCLWKNST-KLLVINR---KNLLVCDCNNEGSEDV 317 (339)
Q Consensus 269 ~~~W~~~~~i~~~~~~~~~~~~~~~~-i~~~~~~---~~~~~yd~~t~~~~~v 317 (339)
+....+ +..... .....+.++|+ |++.... ..++.+|++++..+.+
T Consensus 324 -~~~~~l-t~~~~~-~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~~l 373 (435)
T PRK05137 324 -SNPRRI-SFGGGR-YSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGERIL 373 (435)
T ss_pred -CCeEEe-ecCCCc-ccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceEec
Confidence 222221 111111 22234556664 4444322 2588899887766554
No 151
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=29.99 E-value=15 Score=31.37 Aligned_cols=38 Identities=24% Similarity=0.356 Sum_probs=29.8
Q ss_pred CCCcHHHHHHHHccCC-cccceeeeeccccccccCCChH
Q 047931 2 ATIPHEIIFEILLRLP-VKSLCRFKCVSSSWLALISDPQ 39 (339)
Q Consensus 2 ~~Lp~Dll~eIL~rLP-~~~l~r~~~VcK~W~~li~sp~ 39 (339)
.+||.+++.+||.||| -.+|..++.|--.-..++++..
T Consensus 203 ~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~e~~ 241 (332)
T KOG3926|consen 203 HDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSEERR 241 (332)
T ss_pred ccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHHHHH
Confidence 5899999999999999 7788888777665555555443
No 152
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=28.89 E-value=3.1e+02 Score=22.15 Aligned_cols=94 Identities=6% Similarity=0.025 Sum_probs=53.8
Q ss_pred EEEEEECCCceeeeecCCCCCCCCceeEEE-EECCeEEEEEe---CCCeEEEEEEcccCCCCCeEEEEEecCCCCeeEEE
Q 047931 213 VLAAFDLVEERFKEFPLPDASTSFRFFGTG-VLGDCLCLQFF---KGKMKEHWIMKEYGVKESWTRVFIHQDPNNVWPLC 288 (339)
Q Consensus 213 ~il~fD~~~~~~~~i~lP~~~~~~~~~~l~-~~~G~L~~v~~---~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~ 288 (339)
.+..||++.+....+ +... .. .+. .-+|++.++.. ....+++|..++ +..+.+..... +..++
T Consensus 84 ~v~lyd~~~~~i~~~--~~~~---~n-~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~------~~~i~~~~~~~-~t~~~ 150 (194)
T PF08662_consen 84 KVTLYDVKGKKIFSF--GTQP---RN-TISWSPDGRFLVLAGFGNLNGDLEFWDVRK------KKKISTFEHSD-ATDVE 150 (194)
T ss_pred ccEEEcCcccEeEee--cCCC---ce-EEEECCCCCEEEEEEccCCCcEEEEEECCC------CEEeeccccCc-EEEEE
Confidence 677788765444433 2221 11 122 22777777665 245799999884 33444443322 56667
Q ss_pred EEeCCeEEEEEC-------CcEEEEEECCCCcEEEeEE
Q 047931 289 LWKNSTKLLVIN-------RKNLLVCDCNNEGSEDVAV 319 (339)
Q Consensus 289 ~~~~~~i~~~~~-------~~~~~~yd~~t~~~~~v~~ 319 (339)
..++|+.++... +..+-.|+...+.+.+..+
T Consensus 151 WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~~l~~~~~ 188 (194)
T PF08662_consen 151 WSPDGRYLATATTSPRLRVDNGFKIWSFQGRLLYKKPF 188 (194)
T ss_pred EcCCCCEEEEEEeccceeccccEEEEEecCeEeEecch
Confidence 778887666443 2236777777777666644
No 153
>PRK04043 tolB translocation protein TolB; Provisional
Probab=28.78 E-value=4.8e+02 Score=24.24 Aligned_cols=185 Identities=6% Similarity=-0.015 Sum_probs=99.4
Q ss_pred CCEEEEEcccccceeecCCCCCCCCCCCCCCeeEEee-eCCceEEEEEeeEeCCCcEEEEEEeCCCceEEecccCCccCc
Q 047931 111 PKIFFVLNPLTRESKRIPDVPFEPFPRSSDDLYGFGC-TAEDCKFIKVSFGLKPNMSVAIFSLRMNSWRRVLASGYTRPL 189 (339)
Q Consensus 111 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~-~~~~ykvv~~~~~~~~~~~~~vyss~~~~W~~~~~~~~~~~~ 189 (339)
..++++.|..|++.+.|-..+.. .....+ .++..-++... ......+.+++..++.++.+...+..
T Consensus 212 ~~~Iyv~dl~tg~~~~lt~~~g~--------~~~~~~SPDG~~la~~~~--~~g~~~Iy~~dl~~g~~~~LT~~~~~--- 278 (419)
T PRK04043 212 KPTLYKYNLYTGKKEKIASSQGM--------LVVSDVSKDGSKLLLTMA--PKGQPDIYLYDTNTKTLTQITNYPGI--- 278 (419)
T ss_pred CCEEEEEECCCCcEEEEecCCCc--------EEeeEECCCCCEEEEEEc--cCCCcEEEEEECCCCcEEEcccCCCc---
Confidence 45899999999988887553322 111223 22333333322 23456788888888889887543321
Q ss_pred cCCCceEECC-eEEEEEecCCCCeEEEEEECCCceeeeecCCCCCCCCceeEEEEECCe-EEEEEeCC------CeEEEE
Q 047931 190 INVPGTLTNG-ALHWRLQKHGGDFVLAAFDLVEERFKEFPLPDASTSFRFFGTGVLGDC-LCLQFFKG------KMKEHW 261 (339)
Q Consensus 190 ~~~~~v~~~G-~lyw~~~~~~~~~~il~fD~~~~~~~~i~lP~~~~~~~~~~l~~~~G~-L~~v~~~~------~~l~iW 261 (339)
...+...-+| .+|+..... ....|...|+.+.+.+.+-.- .. ..... .-+|+ |.++.... ...+||
T Consensus 279 d~~p~~SPDG~~I~F~Sdr~-g~~~Iy~~dl~~g~~~rlt~~--g~--~~~~~-SPDG~~Ia~~~~~~~~~~~~~~~~I~ 352 (419)
T PRK04043 279 DVNGNFVEDDKRIVFVSDRL-GYPNIFMKKLNSGSVEQVVFH--GK--NNSSV-STYKNYIVYSSRETNNEFGKNTFNLY 352 (419)
T ss_pred cCccEECCCCCEEEEEECCC-CCceEEEEECCCCCeEeCccC--CC--cCceE-CCCCCEEEEEEcCCCcccCCCCcEEE
Confidence 1112233456 577776543 234678888888777554211 10 11111 22555 44444322 336788
Q ss_pred EEcccCCCCCeEEEEEecCCCCeeEEEEEeCCe-EEEEECC---cEEEEEECCCCcEEEeEE
Q 047931 262 IMKEYGVKESWTRVFIHQDPNNVWPLCLWKNST-KLLVINR---KNLLVCDCNNEGSEDVAV 319 (339)
Q Consensus 262 ~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~-i~~~~~~---~~~~~yd~~t~~~~~v~~ 319 (339)
.++-.+ +.+..+..- ..... ..+.+||+ |++.... ..+..++++.++-..+..
T Consensus 353 v~d~~~--g~~~~LT~~--~~~~~-p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~~~~~l~~ 409 (419)
T PRK04043 353 LISTNS--DYIRRLTAN--GVNQF-PRFSSDGGSIMFIKYLGNQSALGIIRLNYNKSFLFPL 409 (419)
T ss_pred EEECCC--CCeEECCCC--CCcCC-eEECCCCCEEEEEEccCCcEEEEEEecCCCeeEEeec
Confidence 887322 334332221 11122 34567785 5555432 249999999987777754
No 154
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=28.30 E-value=5.4e+02 Score=24.73 Aligned_cols=91 Identities=14% Similarity=0.089 Sum_probs=48.7
Q ss_pred eEEEEEECCCceeeeec----CCCCCCCCceeEEEEECCeEEEEEe--CCCeEEEEEEcccCCCCCeEEEEEecCCCCee
Q 047931 212 FVLAAFDLVEERFKEFP----LPDASTSFRFFGTGVLGDCLCLQFF--KGKMKEHWIMKEYGVKESWTRVFIHQDPNNVW 285 (339)
Q Consensus 212 ~~il~fD~~~~~~~~i~----lP~~~~~~~~~~l~~~~G~L~~v~~--~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~ 285 (339)
..|+.|+...++.+..- .+... . ..-.+.++..+.. ....+..|..++......|... .+. ..
T Consensus 80 g~v~~ys~~~g~it~~~st~~h~~~v----~--~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~----~~~-~~ 148 (541)
T KOG4547|consen 80 GSVLLYSVAGGEITAKLSTDKHYGNV----N--EILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQ----KPL-VS 148 (541)
T ss_pred ccEEEEEecCCeEEEEEecCCCCCcc----e--eeecccccCceEecCCceeEEEEecccceeeeeeccC----CCc-cc
Confidence 47777777766554321 22111 1 1111333333333 5666777777763222233221 112 55
Q ss_pred EEEEEeCCeEEEEECCcEEEEEECCCCcE
Q 047931 286 PLCLWKNSTKLLVINRKNLLVCDCNNEGS 314 (339)
Q Consensus 286 ~~~~~~~~~i~~~~~~~~~~~yd~~t~~~ 314 (339)
-+++.++|.+++.... .+-.||.++++.
T Consensus 149 sl~is~D~~~l~~as~-~ik~~~~~~kev 176 (541)
T KOG4547|consen 149 SLCISPDGKILLTASR-QIKVLDIETKEV 176 (541)
T ss_pred eEEEcCCCCEEEeccc-eEEEEEccCceE
Confidence 6777778777776643 488888888874
No 155
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=28.05 E-value=3.5e+02 Score=22.48 Aligned_cols=85 Identities=9% Similarity=-0.015 Sum_probs=0.0
Q ss_pred CCCCCCCCceeEEEEECCeEEEEEeCCCeEEEEEEcccCCCCCeEEEEEecCCC--------C----eeEEEEEeCCeEE
Q 047931 229 LPDASTSFRFFGTGVLGDCLCLQFFKGKMKEHWIMKEYGVKESWTRVFIHQDPN--------N----VWPLCLWKNSTKL 296 (339)
Q Consensus 229 lP~~~~~~~~~~l~~~~G~L~~v~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~--------~----~~~~~~~~~~~i~ 296 (339)
+|+-.-. ..+...+++|...++......+.+|.++. ...=..-.+|.+-+ . +.-+.+..+|..+
T Consensus 6 ~P~i~Lg-s~~~~l~~~~~~Ll~iT~~G~l~vWnl~~---~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~Pi 81 (219)
T PF07569_consen 6 LPPIVLG-SPVSFLECNGSYLLAITSSGLLYVWNLKK---GKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPI 81 (219)
T ss_pred cCcEecC-CceEEEEeCCCEEEEEeCCCeEEEEECCC---CeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEE
Q ss_pred EEECCcEEEEEECCCCcEEEe
Q 047931 297 LVINRKNLLVCDCNNEGSEDV 317 (339)
Q Consensus 297 ~~~~~~~~~~yd~~t~~~~~v 317 (339)
+...++..|.||.+-+.|.+|
T Consensus 82 V~lsng~~y~y~~~L~~W~~v 102 (219)
T PF07569_consen 82 VTLSNGDSYSYSPDLGCWIRV 102 (219)
T ss_pred EEEeCCCEEEeccccceeEEe
No 156
>PF07370 DUF1489: Protein of unknown function (DUF1489); InterPro: IPR008320 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=27.07 E-value=42 Score=25.51 Aligned_cols=27 Identities=19% Similarity=0.332 Sum_probs=16.4
Q ss_pred eEECCeEEEEEecC-CCCeEEEEEECCC
Q 047931 195 TLTNGALHWRLQKH-GGDFVLAAFDLVE 221 (339)
Q Consensus 195 v~~~G~lyw~~~~~-~~~~~il~fD~~~ 221 (339)
+.-+|++||+.... .-.-.|+.||..+
T Consensus 44 ll~GGSlYWVikg~i~~RQ~Il~i~~~~ 71 (137)
T PF07370_consen 44 LLDGGSLYWVIKGQIQCRQRILDIEEVT 71 (137)
T ss_pred hccCCcEEEEECCEEEEeeeeeeeeEec
Confidence 44589999997664 1122466666443
No 157
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=26.99 E-value=4.4e+02 Score=23.26 Aligned_cols=50 Identities=6% Similarity=-0.067 Sum_probs=31.5
Q ss_pred eEEEEEECCCceee-eecCCCCCCCCceeEEEEECCeEEEEEe--CCCeEEEEEEcc
Q 047931 212 FVLAAFDLVEERFK-EFPLPDASTSFRFFGTGVLGDCLCLQFF--KGKMKEHWIMKE 265 (339)
Q Consensus 212 ~~il~fD~~~~~~~-~i~lP~~~~~~~~~~l~~~~G~L~~v~~--~~~~l~iW~l~~ 265 (339)
..+.++|.++++-. ..+.-..+ --.+...+-.+.|++. ++.++.+|.+..
T Consensus 112 k~v~~wD~~tG~~~rk~k~h~~~----vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~ 164 (338)
T KOG0265|consen 112 KTVRGWDAETGKRIRKHKGHTSF----VNSLDPSRRGPQLVCSGSDDGTLKLWDIRK 164 (338)
T ss_pred ceEEEEecccceeeehhccccce----eeecCccccCCeEEEecCCCceEEEEeecc
Confidence 58999999998643 33332222 1122344555556665 788999999985
No 158
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=26.22 E-value=5.9e+02 Score=24.43 Aligned_cols=99 Identities=12% Similarity=0.115 Sum_probs=56.7
Q ss_pred eEEEEEECCCce-eeeecCCCCCCCCceeEEEEE-CCeEEEEEeCCCeEEEEEEcccCCCCCeEEEEEecCCCCeeEEEE
Q 047931 212 FVLAAFDLVEER-FKEFPLPDASTSFRFFGTGVL-GDCLCLQFFKGKMKEHWIMKEYGVKESWTRVFIHQDPNNVWPLCL 289 (339)
Q Consensus 212 ~~il~fD~~~~~-~~~i~lP~~~~~~~~~~l~~~-~G~L~~v~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~ 289 (339)
..+..||=.+.+ ...+.- ..........|.-. |++=.+....+.+..||.........+|..-.++.. ..+-++
T Consensus 212 gki~iyDGktge~vg~l~~-~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~d---qqvG~l 287 (603)
T KOG0318|consen 212 GKIYIYDGKTGEKVGELED-SDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVED---QQVGCL 287 (603)
T ss_pred ccEEEEcCCCccEEEEecC-CCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhc---eEEEEE
Confidence 578888876644 344431 11111123344444 555555555788999999986432234443333322 345567
Q ss_pred EeCCeEEEEECCcEEEEEECCCCcE
Q 047931 290 WKNSTKLLVINRKNLLVCDCNNEGS 314 (339)
Q Consensus 290 ~~~~~i~~~~~~~~~~~yd~~t~~~ 314 (339)
|.++.++-+.-++.+-+||++....
T Consensus 288 Wqkd~lItVSl~G~in~ln~~d~~~ 312 (603)
T KOG0318|consen 288 WQKDHLITVSLSGTINYLNPSDPSV 312 (603)
T ss_pred EeCCeEEEEEcCcEEEEecccCCCh
Confidence 7766666666666688888877763
No 159
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=25.58 E-value=2.8e+02 Score=27.10 Aligned_cols=106 Identities=15% Similarity=0.133 Sum_probs=58.0
Q ss_pred CeEEEEEecCCCCeEEEEEECCCceeee----ecCCCCCCCCceeEEEEECCeEEEEEe-CCCeEEEEEEcccCC-CCCe
Q 047931 199 GALHWRLQKHGGDFVLAAFDLVEERFKE----FPLPDASTSFRFFGTGVLGDCLCLQFF-KGKMKEHWIMKEYGV-KESW 272 (339)
Q Consensus 199 G~lyw~~~~~~~~~~il~fD~~~~~~~~----i~lP~~~~~~~~~~l~~~~G~L~~v~~-~~~~l~iW~l~~~~~-~~~W 272 (339)
..||-...++ .|.-||.+...|+. +.-|... .+..+.+.-..|..++|.. .+.++..|.++..+- +.+
T Consensus 65 HiLavadE~G----~i~l~dt~~~~fr~ee~~lk~~~aH-~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~- 138 (720)
T KOG0321|consen 65 HILAVADEDG----GIILFDTKSIVFRLEERQLKKPLAH-KNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGR- 138 (720)
T ss_pred ceEEEecCCC----ceeeecchhhhcchhhhhhcccccc-cceeEeeccCCCceeEEEccCCceeeeeeeccceeecce-
Confidence 3455444444 89999999888881 2222211 1133445445688999888 889999999997431 111
Q ss_pred EEEEEecCCCCeeEEEEEeCCeEEEEEC--CcEEEEEECCCCc
Q 047931 273 TRVFIHQDPNNVWPLCLWKNSTKLLVIN--RKNLLVCDCNNEG 313 (339)
Q Consensus 273 ~~~~~i~~~~~~~~~~~~~~~~i~~~~~--~~~~~~yd~~t~~ 313 (339)
. -+...-...-+|+...+..+|+.+ ++.++.+|++-+.
T Consensus 139 ~---~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~ 178 (720)
T KOG0321|consen 139 L---NLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNG 178 (720)
T ss_pred e---ecccccccchhhhccCCCcceeeccCCCcEEEEEEeccc
Confidence 0 111110134455555443333332 3346666665555
No 160
>PRK01742 tolB translocation protein TolB; Provisional
Probab=24.89 E-value=5.6e+02 Score=23.72 Aligned_cols=140 Identities=11% Similarity=0.102 Sum_probs=69.8
Q ss_pred CcEEEEEEeCCCceEEecccCCccCccCCCceEECCe-EEEEEecCCCCeEEEEEECCCceeeeecCCCCCCCCceeEEE
Q 047931 164 NMSVAIFSLRMNSWRRVLASGYTRPLINVPGTLTNGA-LHWRLQKHGGDFVLAAFDLVEERFKEFPLPDASTSFRFFGTG 242 (339)
Q Consensus 164 ~~~~~vyss~~~~W~~~~~~~~~~~~~~~~~v~~~G~-lyw~~~~~~~~~~il~fD~~~~~~~~i~lP~~~~~~~~~~l~ 242 (339)
...+.+++..++.-+.+...+... ......-+|. +.+..... ....|..+|+.+.+.+.+. ........+..
T Consensus 227 ~~~i~i~dl~tg~~~~l~~~~g~~---~~~~wSPDG~~La~~~~~~-g~~~Iy~~d~~~~~~~~lt--~~~~~~~~~~w- 299 (429)
T PRK01742 227 KSQLVVHDLRSGARKVVASFRGHN---GAPAFSPDGSRLAFASSKD-GVLNIYVMGANGGTPSQLT--SGAGNNTEPSW- 299 (429)
T ss_pred CcEEEEEeCCCCceEEEecCCCcc---CceeECCCCCEEEEEEecC-CcEEEEEEECCCCCeEeec--cCCCCcCCEEE-
Confidence 456777787777665554332211 1112333564 44443322 2235777888777665542 11111011111
Q ss_pred EECCe-EEEEEeCCCeEEEEEEcccCCCCCeEEEEEecCCCCeeEEEEEeCCeEEEEECCcEEEEEECCCCcEEEe
Q 047931 243 VLGDC-LCLQFFKGKMKEHWIMKEYGVKESWTRVFIHQDPNNVWPLCLWKNSTKLLVINRKNLLVCDCNNEGSEDV 317 (339)
Q Consensus 243 ~~~G~-L~~v~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~yd~~t~~~~~v 317 (339)
.-+|+ |+++.......+||.++..+. ... .+... + ....+.++|+.++......++.+|+++++.+.+
T Consensus 300 SpDG~~i~f~s~~~g~~~I~~~~~~~~---~~~--~l~~~-~-~~~~~SpDG~~ia~~~~~~i~~~Dl~~g~~~~l 368 (429)
T PRK01742 300 SPDGQSILFTSDRSGSPQVYRMSASGG---GAS--LVGGR-G-YSAQISADGKTLVMINGDNVVKQDLTSGSTEVL 368 (429)
T ss_pred CCCCCEEEEEECCCCCceEEEEECCCC---CeE--EecCC-C-CCccCCCCCCEEEEEcCCCEEEEECCCCCeEEe
Confidence 22565 444444556789999875332 111 12111 1 123455677544434334578899998887654
No 161
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=24.69 E-value=4.7e+02 Score=22.82 Aligned_cols=63 Identities=10% Similarity=0.122 Sum_probs=41.3
Q ss_pred CcEEEEEEeCCCceEEecc-cC---CccCccCCCceEECCeEEEEEecCCCCeEEEEEECCCceeeeecC
Q 047931 164 NMSVAIFSLRMNSWRRVLA-SG---YTRPLINVPGTLTNGALHWRLQKHGGDFVLAAFDLVEERFKEFPL 229 (339)
Q Consensus 164 ~~~~~vyss~~~~W~~~~~-~~---~~~~~~~~~~v~~~G~lyw~~~~~~~~~~il~fD~~~~~~~~i~l 229 (339)
...+.+|+..+.+|..+.. +. ..+......-+++.|.+-.-.. ....+..||..+.+|..+.-
T Consensus 15 C~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~---~~~~la~yd~~~~~w~~~~~ 81 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGT---NSSNLATYDFKNQTWSSLGG 81 (281)
T ss_pred CCEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCC---CceeEEEEecCCCeeeecCC
Confidence 6789999999999998742 21 1111222334556665543321 34689999999999988754
No 162
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=24.03 E-value=5.4e+02 Score=26.19 Aligned_cols=66 Identities=12% Similarity=0.102 Sum_probs=41.1
Q ss_pred eEECCeEEEEEecCCCCeEEEEEECCCceeeee--cCCCCCCCCceeEEEEE-CCeEEEEEeCCCeEEEEEEcc
Q 047931 195 TLTNGALHWRLQKHGGDFVLAAFDLVEERFKEF--PLPDASTSFRFFGTGVL-GDCLCLQFFKGKMKEHWIMKE 265 (339)
Q Consensus 195 v~~~G~lyw~~~~~~~~~~il~fD~~~~~~~~i--~lP~~~~~~~~~~l~~~-~G~L~~v~~~~~~l~iW~l~~ 265 (339)
+..-|.+-.++... ..|-.||+.++--+.- +-|.... .-..++.- -+++.+.+..+.-+..|.+++
T Consensus 456 vs~CGNF~~IG~S~---G~Id~fNmQSGi~r~sf~~~~ah~~--~V~gla~D~~n~~~vsa~~~Gilkfw~f~~ 524 (910)
T KOG1539|consen 456 VSFCGNFVFIGYSK---GTIDRFNMQSGIHRKSFGDSPAHKG--EVTGLAVDGTNRLLVSAGADGILKFWDFKK 524 (910)
T ss_pred EeccCceEEEeccC---CeEEEEEcccCeeecccccCccccC--ceeEEEecCCCceEEEccCcceEEEEecCC
Confidence 45567777777665 6899999998755432 2333221 11222222 446666666888899999986
No 163
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=24.03 E-value=6.2e+02 Score=24.28 Aligned_cols=63 Identities=14% Similarity=0.015 Sum_probs=42.9
Q ss_pred CCeEEEEEeCCCeEEEEEEcccCCCCCeEEE--EEecC-CC---CeeEEEEEeCCeEEEEEC-CcEEEEEECCCCc
Q 047931 245 GDCLCLQFFKGKMKEHWIMKEYGVKESWTRV--FIHQD-PN---NVWPLCLWKNSTKLLVIN-RKNLLVCDCNNEG 313 (339)
Q Consensus 245 ~G~L~~v~~~~~~l~iW~l~~~~~~~~W~~~--~~i~~-~~---~~~~~~~~~~~~i~~~~~-~~~~~~yd~~t~~ 313 (339)
+|.+......+..|++|.... |... +.+.. .. ++.-+.|..+|++|+..+ +..+-+||++.-+
T Consensus 328 dg~~iAagc~DGSIQ~W~~~~------~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~k 397 (641)
T KOG0772|consen 328 DGKLIAAGCLDGSIQIWDKGS------RTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFK 397 (641)
T ss_pred CcchhhhcccCCceeeeecCC------cccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccc
Confidence 888855555889999998743 4443 22322 11 367788888998888665 4458899987654
No 164
>PF06881 Elongin_A: RNA polymerase II transcription factor SIII (Elongin) subunit A; InterPro: IPR010684 This family represents a conserved region within RNA polymerase II transcription factor SIII (Elongin) subunit A. In mammals, the Elongin complex activates elongation by RNA polymerase II by suppressing transient pausing of the polymerase at many sites within transcription units. Elongin is a heterotrimer composed of A, B, and C subunits of 110, 18, and 15 kilodaltons, respectively. Subunit A has been shown to function as the transcriptionally active component of Elongin [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus, 0016021 integral to membrane
Probab=23.93 E-value=36 Score=24.76 Aligned_cols=28 Identities=18% Similarity=0.281 Sum_probs=24.7
Q ss_pred CCCCcHHHHHHHHccCCcccceeeeecc
Q 047931 1 MATIPHEIIFEILLRLPVKSLCRFKCVS 28 (339)
Q Consensus 1 ~~~Lp~Dll~eIL~rLP~~~l~r~~~Vc 28 (339)
+.++|.+++.-||.++.+..|.+.-.-|
T Consensus 4 vG~~py~ll~piL~~~~~~QL~~iE~~n 31 (109)
T PF06881_consen 4 VGDVPYHLLRPILEKCSPEQLRRIEDNN 31 (109)
T ss_pred cCCCCHHHHHHHHccCCHHHHHHHHHhC
Confidence 4679999999999999999998887766
No 165
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=23.89 E-value=4.5e+02 Score=22.24 Aligned_cols=127 Identities=14% Similarity=0.152 Sum_probs=70.7
Q ss_pred CcEEEEEEeCC--CceEEecccCCccCccCCCce--EECCeEEEEEecCCCCeEEEEEECC-Cceeeee---cCCCCCCC
Q 047931 164 NMSVAIFSLRM--NSWRRVLASGYTRPLINVPGT--LTNGALHWRLQKHGGDFVLAAFDLV-EERFKEF---PLPDASTS 235 (339)
Q Consensus 164 ~~~~~vyss~~--~~W~~~~~~~~~~~~~~~~~v--~~~G~lyw~~~~~~~~~~il~fD~~-~~~~~~i---~lP~~~~~ 235 (339)
.....++-|.+ ..|+.....+... ......+ .-+|.+|.+..........++.-.. -++|+.. .+|...
T Consensus 132 ~~~~~~~~S~D~G~tW~~~~~~~~~~-~~~e~~~~~~~dG~l~~~~R~~~~~~~~~~~S~D~G~TWs~~~~~~~~~~~-- 208 (275)
T PF13088_consen 132 SFSAFVYYSDDGGKTWSSGSPIPDGQ-GECEPSIVELPDGRLLAVFRTEGNDDIYISRSTDGGRTWSPPQPTNLPNPN-- 208 (275)
T ss_dssp EEEEEEEEESSTTSSEEEEEECECSE-EEEEEEEEEETTSEEEEEEEECSSTEEEEEEESSTTSS-EEEEEEECSSCC--
T ss_pred CcceEEEEeCCCCceeeccccccccC-CcceeEEEECCCCcEEEEEEccCCCcEEEEEECCCCCcCCCceecccCccc--
Confidence 34455544443 4798875442110 0111122 2578899887763112344444443 3567753 455443
Q ss_pred CceeEEEEE-CCeEEEEEe---CCCeEEEEEEcccCCCCCeEEEEEecC-C---CCeeEEEEEeCCeEE
Q 047931 236 FRFFGTGVL-GDCLCLQFF---KGKMKEHWIMKEYGVKESWTRVFIHQD-P---NNVWPLCLWKNSTKL 296 (339)
Q Consensus 236 ~~~~~l~~~-~G~L~~v~~---~~~~l~iW~l~~~~~~~~W~~~~~i~~-~---~~~~~~~~~~~~~i~ 296 (339)
....+..+ +|++.++.. ....+.|+.-+|. +..|.....|.. + .++.-+...+||+|.
T Consensus 209 -~~~~~~~~~~g~~~~~~~~~~~r~~l~l~~S~D~--g~tW~~~~~i~~~~~~~~~Y~~~~~~~dg~l~ 274 (275)
T PF13088_consen 209 -SSISLVRLSDGRLLLVYNNPDGRSNLSLYVSEDG--GKTWSRPKTIDDGPNGDSGYPSLTQLPDGKLY 274 (275)
T ss_dssp -EEEEEEECTTSEEEEEEECSSTSEEEEEEEECTT--CEEEEEEEEEEEEE-CCEEEEEEEEEETTEEE
T ss_pred -CCceEEEcCCCCEEEEEECCCCCCceEEEEEeCC--CCcCCccEEEeCCCCCcEECCeeEEeCCCcCC
Confidence 34445554 888888888 3566888776653 478999888865 3 335555566677664
No 166
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=23.43 E-value=1.7e+02 Score=26.87 Aligned_cols=64 Identities=14% Similarity=0.091 Sum_probs=35.4
Q ss_pred CCeEEEEEeCCCeEEEEEEcccCCCCCeEEEEEecCCCCeeEEEEEeCCe-EEEEECCcEEEEEECCCCc
Q 047931 245 GDCLCLQFFKGKMKEHWIMKEYGVKESWTRVFIHQDPNNVWPLCLWKNST-KLLVINRKNLLVCDCNNEG 313 (339)
Q Consensus 245 ~G~L~~v~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~-i~~~~~~~~~~~yd~~t~~ 313 (339)
||.=++++..+..+..|.+++.. .+.|.-+.. +. +.-+++..||+ ++....+.++..||.+++.
T Consensus 323 Dg~~~V~Gs~dr~i~~wdlDgn~-~~~W~gvr~-~~---v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~ 387 (519)
T KOG0293|consen 323 DGFRFVTGSPDRTIIMWDLDGNI-LGNWEGVRD-PK---VHDLAITYDGKYVLLVTVDKKIRLYNREARV 387 (519)
T ss_pred CCceeEecCCCCcEEEecCCcch-hhccccccc-ce---eEEEEEcCCCcEEEEEecccceeeechhhhh
Confidence 66555555577888899998643 356865432 11 33445555554 3333334456666655544
No 167
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=22.98 E-value=4.4e+02 Score=22.54 Aligned_cols=40 Identities=15% Similarity=0.135 Sum_probs=30.3
Q ss_pred CceEECCeEEEEEecC-CCCeEEEEEECCCceeeeecCCCC
Q 047931 193 PGTLTNGALHWRLQKH-GGDFVLAAFDLVEERFKEFPLPDA 232 (339)
Q Consensus 193 ~~v~~~G~lyw~~~~~-~~~~~il~fD~~~~~~~~i~lP~~ 232 (339)
.+-.+.|.||.+.... .....-.+||+.+++-..+.+|..
T Consensus 175 naFmvCGvLY~~~s~~~~~~~I~yafDt~t~~~~~~~i~f~ 215 (250)
T PF02191_consen 175 NAFMVCGVLYATDSYDTRDTEIFYAFDTYTGKEEDVSIPFP 215 (250)
T ss_pred ceeeEeeEEEEEEECCCCCcEEEEEEECCCCceeceeeeec
Confidence 3567889999998776 335688999999988777655544
No 168
>PTZ00421 coronin; Provisional
Probab=22.96 E-value=6.7e+02 Score=23.95 Aligned_cols=110 Identities=8% Similarity=0.019 Sum_probs=0.0
Q ss_pred CCeEEEEEecCCCCeEEEEEECCCcee------eeecCCCCCCCCceeEEEEECCeEEEEEeCCCeEEEEEEcccCCCCC
Q 047931 198 NGALHWRLQKHGGDFVLAAFDLVEERF------KEFPLPDASTSFRFFGTGVLGDCLCLQFFKGKMKEHWIMKEYGVKES 271 (339)
Q Consensus 198 ~G~lyw~~~~~~~~~~il~fD~~~~~~------~~i~lP~~~~~~~~~~l~~~~G~L~~v~~~~~~l~iW~l~~~~~~~~ 271 (339)
+|.+...+..+ ..|..+|+.++.. ....+......-......-.++.+.+....+..+.||.++.
T Consensus 87 d~~~LaSgS~D---gtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~t------ 157 (493)
T PTZ00421 87 DPQKLFTASED---GTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVER------ 157 (493)
T ss_pred CCCEEEEEeCC---CEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCC------
Q ss_pred eEEEEEecC-CCCeeEEEEEeCCeEEEEECCcE-EEEEECCCCcEEE
Q 047931 272 WTRVFIHQD-PNNVWPLCLWKNSTKLLVINRKN-LLVCDCNNEGSED 316 (339)
Q Consensus 272 W~~~~~i~~-~~~~~~~~~~~~~~i~~~~~~~~-~~~yd~~t~~~~~ 316 (339)
-.....+.. .-.+.-+++..+|.+++.....+ +..||+++++...
T Consensus 158 g~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~ 204 (493)
T PTZ00421 158 GKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVS 204 (493)
T ss_pred CeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEE
No 169
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=22.91 E-value=2.2e+02 Score=25.37 Aligned_cols=64 Identities=9% Similarity=0.109 Sum_probs=34.3
Q ss_pred ECCeEEEEEeCCCeEEEEEEcccCCCCCeEEEEEecCCCC-eeEEEEEeCC-eEEEEE-CCcEEEEEEC
Q 047931 244 LGDCLCLQFFKGKMKEHWIMKEYGVKESWTRVFIHQDPNN-VWPLCLWKNS-TKLLVI-NRKNLLVCDC 309 (339)
Q Consensus 244 ~~G~L~~v~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~-~~~~~~~~~~-~i~~~~-~~~~~~~yd~ 309 (339)
++|+-......+..+.||.++|+...+. +-.++..+.+ -.-+.+.+|. .+++.. ...++.+|.+
T Consensus 96 SdGK~lat~~~Dr~Ir~w~~~DF~~~eH--r~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~ 162 (420)
T KOG2096|consen 96 SDGKKLATISGDRSIRLWDVRDFENKEH--RCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKL 162 (420)
T ss_pred CCCceeEEEeCCceEEEEecchhhhhhh--hHhhccccCCCceEEEECCCcceEEEEEccCCEEEEEEe
Confidence 3676665555889999999999864332 1123332322 2233444444 244433 2334666654
No 170
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=22.07 E-value=6.8e+02 Score=23.72 Aligned_cols=82 Identities=10% Similarity=-0.021 Sum_probs=0.0
Q ss_pred EEEEEEeCCC--ceEEecc-----cCCccCccCCCceEECCeEEEEEecCCCCeEEEEEECCCceeeee-cCCCCCCCCc
Q 047931 166 SVAIFSLRMN--SWRRVLA-----SGYTRPLINVPGTLTNGALHWRLQKHGGDFVLAAFDLVEERFKEF-PLPDASTSFR 237 (339)
Q Consensus 166 ~~~vyss~~~--~W~~~~~-----~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~il~fD~~~~~~~~i-~lP~~~~~~~ 237 (339)
.+..++..++ .|+.-.. .+........+.+..+|.+|.-..++ .+.+||.++.+-.-- ++|.... .
T Consensus 367 ~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG----~l~ald~~tG~~lW~~~~~~~~~--a 440 (488)
T cd00216 367 GLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADG----YFRAFDATTGKELWKFRTPSGIQ--A 440 (488)
T ss_pred EEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCC----eEEEEECCCCceeeEEECCCCce--E
Q ss_pred eeEEEEECCeEEEEEe
Q 047931 238 FFGTGVLGDCLCLQFF 253 (339)
Q Consensus 238 ~~~l~~~~G~L~~v~~ 253 (339)
.+.+.+.+|++|++..
T Consensus 441 ~P~~~~~~g~~yv~~~ 456 (488)
T cd00216 441 TPMTYEVNGKQYVGVM 456 (488)
T ss_pred cCEEEEeCCEEEEEEE
No 171
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=21.43 E-value=3.9e+02 Score=23.85 Aligned_cols=54 Identities=15% Similarity=0.073 Sum_probs=39.0
Q ss_pred CCCceEECCeEEEEEecCCCCeEEEEEECCCceeeee-cCCCCCCCCceeEEEEECCeEEEEEe
Q 047931 191 NVPGTLTNGALHWRLQKHGGDFVLAAFDLVEERFKEF-PLPDASTSFRFFGTGVLGDCLCLQFF 253 (339)
Q Consensus 191 ~~~~v~~~G~lyw~~~~~~~~~~il~fD~~~~~~~~i-~lP~~~~~~~~~~l~~~~G~L~~v~~ 253 (339)
..++-..+|.+|...... ..+..+|.+++++..+ .+|.... .|+-. |.+.+|..
T Consensus 205 PhSPRWhdgrLwvldsgt---Gev~~vD~~~G~~e~Va~vpG~~r-----GL~f~-G~llvVgm 259 (335)
T TIGR03032 205 PHSPRWYQGKLWLLNSGR---GELGYVDPQAGKFQPVAFLPGFTR-----GLAFA-GDFAFVGL 259 (335)
T ss_pred CcCCcEeCCeEEEEECCC---CEEEEEcCCCCcEEEEEECCCCCc-----cccee-CCEEEEEe
Confidence 445678899999887664 6899999998888877 6775442 23333 77777765
No 172
>cd01207 Ena-Vasp Enabled-VASP-type homology (EVH1) domain. Enabled-VASP-type homology (EVH1) domain. The EVH1 domain binds to other proteins at proline rich sequences. It is found in proteins involved in cytoskeletal reorganization such as Enabled and VASP. Ena-VASP type EVH1 domains specifically recognize FPPPP motifs in the focal adhesion proteins zyxin and vinculin, and the ActA surface protein of Listeria monocytogenes. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=21.18 E-value=3.1e+02 Score=20.13 Aligned_cols=41 Identities=2% Similarity=-0.143 Sum_probs=23.9
Q ss_pred CEEEEEcccccceeecCCCCCCCCCCCCCCeeEEee--eCCceEEEEEe
Q 047931 112 KIFFVLNPLTRESKRIPDVPFEPFPRSSDDLYGFGC--TAEDCKFIKVS 158 (339)
Q Consensus 112 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~g~--~~~~ykvv~~~ 158 (339)
..+.+.||.|+.|...-+.+.. ...+.+-+ ..+.|+|+...
T Consensus 9 A~Vm~~d~~tk~W~P~~~~~~~------ls~V~~~~~~~~~~yrIvg~~ 51 (111)
T cd01207 9 ASVMVYDDSNKKWVPAGGGSQG------FSRVQIYHHPRNNTFRVVGRK 51 (111)
T ss_pred EEeeEEcCCCCcEEcCCCCCCC------cceEEEEEcCCCCEEEEEEee
Confidence 4678899999986654331111 01223323 56778888754
No 173
>PRK04043 tolB translocation protein TolB; Provisional
Probab=21.00 E-value=6.8e+02 Score=23.26 Aligned_cols=102 Identities=12% Similarity=0.097 Sum_probs=57.5
Q ss_pred eEEEEEECCCceeeeecCCCCCCCCceeEEEEECC-eEEEEEeCCCeEEEEEEcccCCCCCeEEEEEecCCCCeeEEEEE
Q 047931 212 FVLAAFDLVEERFKEFPLPDASTSFRFFGTGVLGD-CLCLQFFKGKMKEHWIMKEYGVKESWTRVFIHQDPNNVWPLCLW 290 (339)
Q Consensus 212 ~~il~fD~~~~~~~~i~lP~~~~~~~~~~l~~~~G-~L~~v~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~ 290 (339)
..|..+|+.+.+-+.+--..... ..... .-|| +|.+.......-+||.++-.+ ..+..+...+. ....| .+.
T Consensus 213 ~~Iyv~dl~tg~~~~lt~~~g~~--~~~~~-SPDG~~la~~~~~~g~~~Iy~~dl~~--g~~~~LT~~~~-~d~~p-~~S 285 (419)
T PRK04043 213 PTLYKYNLYTGKKEKIASSQGML--VVSDV-SKDGSKLLLTMAPKGQPDIYLYDTNT--KTLTQITNYPG-IDVNG-NFV 285 (419)
T ss_pred CEEEEEECCCCcEEEEecCCCcE--EeeEE-CCCCCEEEEEEccCCCcEEEEEECCC--CcEEEcccCCC-ccCcc-EEC
Confidence 47888999888776663211110 11111 2255 565555555567889887422 34554322221 11222 355
Q ss_pred eCC-eEEEEECCc---EEEEEECCCCcEEEeEEe
Q 047931 291 KNS-TKLLVINRK---NLLVCDCNNEGSEDVAVA 320 (339)
Q Consensus 291 ~~~-~i~~~~~~~---~~~~yd~~t~~~~~v~~~ 320 (339)
+|| .|+|..+.. .++.+|+++++.+++-..
T Consensus 286 PDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~ 319 (419)
T PRK04043 286 EDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH 319 (419)
T ss_pred CCCCEEEEEECCCCCceEEEEECCCCCeEeCccC
Confidence 677 477765432 599999999999877543
No 174
>PTZ00334 trans-sialidase; Provisional
Probab=20.86 E-value=7.3e+02 Score=25.32 Aligned_cols=80 Identities=13% Similarity=0.106 Sum_probs=50.6
Q ss_pred CCceEE-CCeEEEEEecC---CCCeEEEEEECCCceeeeec-CCCCCCCCceeEEEEEC-CeEEEEEe-CCCeEEEEEEc
Q 047931 192 VPGTLT-NGALHWRLQKH---GGDFVLAAFDLVEERFKEFP-LPDASTSFRFFGTGVLG-DCLCLQFF-KGKMKEHWIMK 264 (339)
Q Consensus 192 ~~~v~~-~G~lyw~~~~~---~~~~~il~fD~~~~~~~~i~-lP~~~~~~~~~~l~~~~-G~L~~v~~-~~~~l~iW~l~ 264 (339)
.++|.. ||++-+-.... +....++.|-..+..|..-. .|+. .+..+.+.+.+ |+|.|+.. ++..-.|++-.
T Consensus 263 GSGI~medGTLVFPv~a~~~~g~~vslIiYS~d~g~W~ls~g~s~~--gC~~P~I~EWe~gkLlM~t~C~dG~RrVYES~ 340 (780)
T PTZ00334 263 GSGVQMKDGTLVFPVEGTKKDGKAVSLIIYSSATESGNLSKGMSAD--GCSDPSVVEWKEGKLMMMTACDDGRRRVYESG 340 (780)
T ss_pred cCeEEecCCeEEEEEEEEcCCCCEEEEEEEecCCCCeEEcCCCCCC--CCCCCEEEEEcCCeEEEEEEeCCCCEEEEEEC
Confidence 345554 67777654332 33567888877777775432 2222 13567899995 99999888 55555666666
Q ss_pred ccCCCCCeEEE
Q 047931 265 EYGVKESWTRV 275 (339)
Q Consensus 265 ~~~~~~~W~~~ 275 (339)
|- +.+|...
T Consensus 341 Dm--G~tWtEA 349 (780)
T PTZ00334 341 DK--GDSWTEA 349 (780)
T ss_pred CC--CCChhhC
Confidence 53 4679876
No 175
>PF02393 US22: US22 like; InterPro: IPR003360 Herpesviruses are large and complex DNA viruses, widely found in nature. Human cytomegalovirus (HCMV), an important human pathogen, defines the betaherpesvirus family. Mouse cytomegalovirus (MCMV) and rat cytomegalovirus serve as biological model systems for HCMV. HCMV, MCMV, and rat CMV display the largest genomes among the herpesviruses and are essentially co-linear over the central 180 kb of the 230-kb genomes. Betaherpesviruses, which include the CMVs as well as human herpesviruses 6 and 7, differ from alpha- and gammaherpesviruses by the presence of additional gene families such as the US22 gene family, which are mainly clustered at the ends of the genome. The US22 family was first described in HCMV. This gene family comprises 12 members in both HCMV and MCMV and 11 in rat CMV []. Members of the US22 gene family are characterised by stretches of hydrophobic and charged residues as well as up to four conserved sequence motifs which are specific for betaherpesviruses. Motif I differs between the HCMV US and UL family members []. Motifs I and II have consensus sequences, while motifs III and IV are less well defined but have stretches of non-polar residues [, ]. Members of this gene family are widely divergent in function and their involvement in viral replication []. This entry contains US22 family members from the Cytomegalovirus, Muromegalovirus and the Roseolovirus taxonomic groups. The name sake of this family US22 is an early nuclear protein that is secreted from cells []. The US22 family may have a role in virus replication and pathogenesis [].
Probab=20.47 E-value=1.9e+02 Score=21.28 Aligned_cols=24 Identities=17% Similarity=0.138 Sum_probs=19.2
Q ss_pred EEEEECCcEEEEEECCCCcEEEeE
Q 047931 295 KLLVINRKNLLVCDCNNEGSEDVA 318 (339)
Q Consensus 295 i~~~~~~~~~~~yd~~t~~~~~v~ 318 (339)
+++....+.++.||.+++.+..+.
T Consensus 84 vvl~~~~G~Vy~yd~~~~~l~~lA 107 (125)
T PF02393_consen 84 VVLVGESGRVYAYDPEDDRLYRLA 107 (125)
T ss_pred EEEEeCCCeEEEEEcCCCEEEEEe
Confidence 555556678999999999988885
No 176
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=20.05 E-value=6.5e+02 Score=24.89 Aligned_cols=67 Identities=10% Similarity=-0.001 Sum_probs=35.4
Q ss_pred CeEEEEEeCCCeEEEEEEcccCCCCCeEE-EEEecC-CCCeeEEEEEeCC-eEEEEECCcEEEEEECCCCc
Q 047931 246 DCLCLQFFKGKMKEHWIMKEYGVKESWTR-VFIHQD-PNNVWPLCLWKNS-TKLLVINRKNLLVCDCNNEG 313 (339)
Q Consensus 246 G~L~~v~~~~~~l~iW~l~~~~~~~~W~~-~~~i~~-~~~~~~~~~~~~~-~i~~~~~~~~~~~yd~~t~~ 313 (339)
+.|...+..+..+.||.+-..-. .+=.- ...+.. .+-.-.+.++... .|+.....+.++.+|..|++
T Consensus 92 D~LLAT~S~D~~VKiW~lp~g~~-q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~a~g~v~i~D~stqk 161 (1012)
T KOG1445|consen 92 DELLATCSRDEPVKIWKLPRGHS-QKLSAPEIDVGGGNVIVECLRFHPTADGILASGAHGSVYITDISTQK 161 (1012)
T ss_pred hhhhhcccCCCeeEEEecCCCcc-cccCCcceeecCCceEEEEeecccCcCceEEeccCceEEEEEcccCc
Confidence 33444444678899999983111 10000 011111 1113455566533 46666666679999988876
Done!