Query 047932
Match_columns 598
No_of_seqs 681 out of 3706
Neff 11.5
Searched_HMMs 46136
Date Fri Mar 29 04:43:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047932.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047932hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 8E-65 1.7E-69 532.6 62.1 502 50-566 381-915 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 5.2E-63 1.1E-67 519.0 62.7 504 71-590 366-904 (1060)
3 PLN03077 Protein ECB2; Provisi 100.0 9.1E-64 2E-68 536.1 51.1 497 49-578 131-702 (857)
4 PLN03077 Protein ECB2; Provisi 100.0 2.6E-60 5.6E-65 509.5 49.0 516 53-598 100-689 (857)
5 PLN03081 pentatricopeptide (PP 100.0 2.3E-58 5.1E-63 482.7 49.8 460 49-535 97-562 (697)
6 PLN03081 pentatricopeptide (PP 100.0 5.5E-58 1.2E-62 479.9 46.1 462 73-562 85-557 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 2.3E-33 4.9E-38 309.2 58.7 517 51-597 341-868 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 2.4E-33 5.3E-38 309.0 58.7 522 49-598 305-835 (899)
9 PRK11447 cellulose synthase su 100.0 6.4E-25 1.4E-29 241.9 61.2 498 48-568 71-706 (1157)
10 PRK11447 cellulose synthase su 100.0 4.2E-25 9.2E-30 243.3 56.5 523 50-597 39-702 (1157)
11 PRK09782 bacteriophage N4 rece 100.0 4.7E-24 1E-28 224.2 51.5 513 49-598 54-709 (987)
12 KOG4626 O-linked N-acetylgluco 99.9 2.7E-24 5.9E-29 200.6 34.8 425 78-527 51-485 (966)
13 KOG4626 O-linked N-acetylgluco 99.9 5E-24 1.1E-28 198.9 35.4 440 50-514 59-508 (966)
14 KOG2002 TPR-containing nuclear 99.9 4.7E-21 1E-25 188.6 45.3 534 18-573 148-756 (1018)
15 PRK09782 bacteriophage N4 rece 99.9 1.3E-19 2.8E-24 190.9 56.9 517 46-597 85-742 (987)
16 TIGR00990 3a0801s09 mitochondr 99.9 5.5E-20 1.2E-24 190.6 51.5 257 264-527 307-571 (615)
17 TIGR00990 3a0801s09 mitochondr 99.9 1E-19 2.2E-24 188.7 47.6 402 142-570 129-579 (615)
18 PRK11788 tetratricopeptide rep 99.9 1.1E-20 2.4E-25 186.2 35.8 307 147-497 42-354 (389)
19 PRK11788 tetratricopeptide rep 99.9 1.2E-20 2.6E-25 186.1 35.6 303 223-537 42-354 (389)
20 PRK10049 pgaA outer membrane p 99.9 1.6E-19 3.5E-24 190.4 45.8 404 143-569 18-463 (765)
21 PRK15174 Vi polysaccharide exp 99.9 6.8E-19 1.5E-23 181.7 49.0 400 142-562 44-464 (656)
22 PRK15174 Vi polysaccharide exp 99.9 2.3E-19 5.1E-24 185.1 44.9 326 49-420 52-381 (656)
23 PRK10049 pgaA outer membrane p 99.9 2.5E-18 5.3E-23 181.5 51.2 414 74-541 14-465 (765)
24 PRK14574 hmsH outer membrane p 99.9 3.6E-18 7.8E-23 176.4 49.6 200 363-570 299-521 (822)
25 KOG2002 TPR-containing nuclear 99.9 2.6E-18 5.6E-23 169.6 43.0 393 120-527 322-745 (1018)
26 PRK14574 hmsH outer membrane p 99.9 2.1E-17 4.5E-22 170.9 50.5 437 49-539 44-520 (822)
27 KOG0495 HAT repeat protein [RN 99.8 3.1E-15 6.8E-20 141.6 50.3 434 120-575 421-859 (913)
28 KOG1915 Cell cycle control pro 99.8 7.1E-16 1.5E-20 140.4 42.7 460 45-527 79-585 (677)
29 KOG2076 RNA polymerase III tra 99.8 1.8E-15 3.9E-20 148.8 45.9 504 50-568 150-775 (895)
30 KOG2003 TPR repeat-containing 99.8 1.3E-16 2.7E-21 144.5 33.4 416 77-510 203-708 (840)
31 KOG0495 HAT repeat protein [RN 99.8 5.5E-14 1.2E-18 133.3 49.9 486 54-572 391-890 (913)
32 KOG1915 Cell cycle control pro 99.8 4.4E-14 9.5E-19 129.0 44.5 453 59-541 59-545 (677)
33 KOG4422 Uncharacterized conser 99.8 1.2E-13 2.7E-18 124.5 40.5 405 74-491 115-591 (625)
34 KOG4422 Uncharacterized conser 99.7 7.2E-13 1.6E-17 119.7 41.3 405 114-526 123-589 (625)
35 KOG2003 TPR repeat-containing 99.7 1.5E-15 3.1E-20 137.7 23.9 437 120-574 216-701 (840)
36 KOG2076 RNA polymerase III tra 99.7 2.8E-13 6E-18 133.7 39.7 368 144-525 143-553 (895)
37 KOG1155 Anaphase-promoting com 99.7 8.8E-12 1.9E-16 114.0 45.6 365 135-525 159-534 (559)
38 KOG2047 mRNA splicing factor [ 99.7 2.2E-11 4.8E-16 115.8 46.0 499 40-563 103-688 (835)
39 KOG0547 Translocase of outer m 99.7 4.4E-13 9.6E-18 123.1 32.1 416 45-489 121-565 (606)
40 PRK10747 putative protoheme IX 99.7 3.8E-13 8.3E-18 131.1 33.6 283 229-526 97-389 (398)
41 PF13429 TPR_15: Tetratricopep 99.7 6.3E-16 1.4E-20 144.1 12.4 262 256-526 13-276 (280)
42 PRK10747 putative protoheme IX 99.7 8.2E-13 1.8E-17 128.8 34.3 126 285-417 262-387 (398)
43 KOG0547 Translocase of outer m 99.7 5.1E-13 1.1E-17 122.7 29.9 420 78-563 118-567 (606)
44 TIGR00540 hemY_coli hemY prote 99.7 1.2E-12 2.6E-17 128.4 35.0 121 152-281 96-217 (409)
45 KOG1155 Anaphase-promoting com 99.7 4.4E-12 9.6E-17 115.9 35.4 367 178-564 161-538 (559)
46 TIGR00540 hemY_coli hemY prote 99.7 6E-13 1.3E-17 130.6 32.5 291 227-525 95-397 (409)
47 COG2956 Predicted N-acetylgluc 99.6 1.2E-12 2.7E-17 114.0 29.6 294 113-418 43-345 (389)
48 PF13429 TPR_15: Tetratricopep 99.6 1.9E-15 4E-20 140.9 12.5 259 46-347 15-274 (280)
49 KOG1126 DNA-binding cell divis 99.6 5.2E-14 1.1E-18 134.5 21.7 290 266-572 334-630 (638)
50 KOG2047 mRNA splicing factor [ 99.6 5.5E-10 1.2E-14 106.6 47.9 528 20-568 49-657 (835)
51 COG2956 Predicted N-acetylgluc 99.6 3.9E-12 8.5E-17 110.9 31.0 222 152-385 47-278 (389)
52 KOG1126 DNA-binding cell divis 99.6 3E-13 6.4E-18 129.4 26.2 289 52-353 332-623 (638)
53 KOG1173 Anaphase-promoting com 99.6 4.9E-11 1.1E-15 112.1 38.6 279 250-541 243-527 (611)
54 COG3071 HemY Uncharacterized e 99.6 7.2E-12 1.6E-16 112.8 31.5 287 229-527 97-390 (400)
55 KOG1173 Anaphase-promoting com 99.6 4.4E-11 9.5E-16 112.4 35.7 287 213-507 241-533 (611)
56 KOG3785 Uncharacterized conser 99.6 4E-11 8.6E-16 106.0 33.1 447 49-541 32-499 (557)
57 COG3071 HemY Uncharacterized e 99.6 7.7E-11 1.7E-15 106.3 33.4 293 193-495 96-395 (400)
58 KOG1174 Anaphase-promoting com 99.5 2.1E-09 4.6E-14 97.3 41.4 298 262-573 207-511 (564)
59 KOG1156 N-terminal acetyltrans 99.5 1.8E-09 3.9E-14 103.5 40.7 421 45-487 47-508 (700)
60 KOG4162 Predicted calmodulin-b 99.5 4.5E-09 9.7E-14 102.9 42.8 417 136-568 319-789 (799)
61 PRK12370 invasion protein regu 99.5 2.7E-11 5.8E-16 123.6 28.5 180 122-313 321-500 (553)
62 KOG3785 Uncharacterized conser 99.5 2.4E-10 5.2E-15 101.1 30.2 429 49-527 67-514 (557)
63 KOG1129 TPR repeat-containing 99.5 2.8E-12 6.1E-17 111.9 17.9 230 290-527 227-458 (478)
64 KOG2376 Signal recognition par 99.5 8.7E-09 1.9E-13 97.8 42.2 444 49-524 22-517 (652)
65 KOG1156 N-terminal acetyltrans 99.5 5.9E-09 1.3E-13 100.0 40.4 423 51-527 19-468 (700)
66 KOG2376 Signal recognition par 99.4 4E-09 8.6E-14 100.0 36.1 413 146-589 18-514 (652)
67 KOG1129 TPR repeat-containing 99.4 2.5E-11 5.5E-16 106.0 19.7 227 221-453 228-456 (478)
68 PRK12370 invasion protein regu 99.4 2.8E-10 6E-15 116.2 30.2 217 120-349 276-501 (553)
69 PF12569 NARP1: NMDA receptor- 99.4 3.4E-09 7.3E-14 104.4 35.9 284 48-349 13-333 (517)
70 TIGR02521 type_IV_pilW type IV 99.4 2.5E-10 5.5E-15 103.9 26.1 199 140-348 31-230 (234)
71 KOG4162 Predicted calmodulin-b 99.4 5.6E-09 1.2E-13 102.2 34.7 126 396-527 655-783 (799)
72 TIGR02521 type_IV_pilW type IV 99.4 5.6E-10 1.2E-14 101.6 26.9 196 288-487 33-229 (234)
73 KOG1174 Anaphase-promoting com 99.4 9.9E-08 2.1E-12 86.8 38.3 314 212-541 190-509 (564)
74 KOG4318 Bicoid mRNA stability 99.3 1E-09 2.2E-14 108.6 25.0 272 127-440 12-285 (1088)
75 KOG4318 Bicoid mRNA stability 99.3 2.3E-10 5.1E-15 113.0 20.2 86 388-476 201-286 (1088)
76 PF12569 NARP1: NMDA receptor- 99.3 1.4E-08 3E-13 100.2 32.4 294 187-489 10-333 (517)
77 KOG0548 Molecular co-chaperone 99.3 4.9E-09 1.1E-13 98.5 27.5 395 147-573 9-466 (539)
78 COG3063 PilF Tfp pilus assembl 99.3 2.1E-09 4.6E-14 89.9 21.9 194 46-279 42-235 (250)
79 KOG0548 Molecular co-chaperone 99.3 9.9E-08 2.1E-12 90.0 35.2 419 46-524 9-486 (539)
80 KOG1840 Kinesin light chain [C 99.3 4.9E-09 1.1E-13 102.0 26.4 244 252-525 200-477 (508)
81 KOG1840 Kinesin light chain [C 99.3 4.7E-09 1E-13 102.1 26.1 237 216-452 199-476 (508)
82 COG3063 PilF Tfp pilus assembl 99.3 9.8E-09 2.1E-13 86.0 23.9 199 142-350 37-236 (250)
83 PRK11189 lipoprotein NlpI; Pro 99.2 1.2E-08 2.6E-13 95.3 27.5 223 49-316 36-266 (296)
84 KOG1127 TPR repeat-containing 99.2 2E-08 4.3E-13 101.0 29.4 501 46-568 499-1073(1238)
85 PRK11189 lipoprotein NlpI; Pro 99.2 2.7E-08 5.9E-13 92.9 28.3 217 120-351 41-266 (296)
86 KOG0624 dsRNA-activated protei 99.2 5E-07 1.1E-11 80.3 33.4 303 139-455 37-370 (504)
87 KOG1127 TPR repeat-containing 99.2 4.5E-07 9.7E-12 91.6 36.6 84 45-132 568-657 (1238)
88 PF13041 PPR_2: PPR repeat fam 99.2 7.8E-11 1.7E-15 76.4 6.4 49 179-227 1-49 (50)
89 PF13041 PPR_2: PPR repeat fam 99.2 1.5E-10 3.2E-15 75.1 6.8 49 459-507 1-49 (50)
90 KOG4340 Uncharacterized conser 99.1 9.9E-08 2.1E-12 82.9 25.1 183 49-248 20-210 (459)
91 KOG0624 dsRNA-activated protei 99.1 1.4E-07 3.1E-12 83.6 26.4 197 218-419 40-251 (504)
92 cd05804 StaR_like StaR_like; a 99.1 8.8E-07 1.9E-11 86.2 35.1 306 180-490 5-336 (355)
93 KOG3616 Selective LIM binding 99.1 9.5E-07 2.1E-11 86.3 33.5 165 328-517 739-903 (1636)
94 cd05804 StaR_like StaR_like; a 99.1 7.2E-07 1.6E-11 86.9 34.0 305 140-454 6-335 (355)
95 KOG3617 WD40 and TPR repeat-co 99.1 8.5E-06 1.9E-10 80.9 39.2 221 49-311 738-992 (1416)
96 KOG1125 TPR repeat-containing 99.1 1.3E-08 2.9E-13 96.5 18.9 228 49-314 295-526 (579)
97 KOG4340 Uncharacterized conser 99.1 5.6E-07 1.2E-11 78.4 26.7 345 78-453 13-373 (459)
98 PRK04841 transcriptional regul 99.0 3.3E-06 7.1E-11 93.3 38.2 337 189-527 382-760 (903)
99 PF04733 Coatomer_E: Coatomer 99.0 1.1E-08 2.3E-13 94.0 15.3 146 367-525 113-263 (290)
100 PRK04841 transcriptional regul 99.0 9.8E-06 2.1E-10 89.6 40.8 339 147-491 381-761 (903)
101 KOG1125 TPR repeat-containing 99.0 1.5E-07 3.3E-12 89.5 21.7 221 147-383 292-525 (579)
102 KOG3616 Selective LIM binding 99.0 1.4E-05 3E-10 78.4 34.7 190 190-413 741-930 (1636)
103 KOG1914 mRNA cleavage and poly 98.9 5.3E-05 1.2E-09 72.0 38.9 152 372-527 347-501 (656)
104 PF04733 Coatomer_E: Coatomer 98.9 1.1E-07 2.3E-12 87.5 17.6 148 296-454 112-264 (290)
105 KOG0985 Vesicle coat protein c 98.9 3.2E-05 6.9E-10 78.7 34.9 366 70-480 979-1373(1666)
106 KOG0985 Vesicle coat protein c 98.9 3.1E-05 6.6E-10 78.9 34.2 361 108-517 950-1333(1666)
107 KOG1914 mRNA cleavage and poly 98.9 9.7E-05 2.1E-09 70.3 37.8 114 52-169 32-166 (656)
108 KOG1070 rRNA processing protei 98.9 1.9E-06 4E-11 90.3 26.3 223 57-317 1442-1665(1710)
109 PLN02789 farnesyltranstransfer 98.8 1.3E-05 2.9E-10 74.8 28.6 214 143-368 40-267 (320)
110 PLN02789 farnesyltranstransfer 98.8 3.8E-06 8.2E-11 78.4 24.6 205 51-298 49-267 (320)
111 KOG1128 Uncharacterized conser 98.8 9.3E-07 2E-11 86.6 20.5 238 248-506 395-633 (777)
112 KOG3617 WD40 and TPR repeat-co 98.8 9.4E-05 2E-09 73.9 34.1 336 139-527 911-1359(1416)
113 KOG1070 rRNA processing protei 98.8 5.2E-06 1.1E-10 87.1 26.6 203 252-459 1459-1667(1710)
114 KOG2053 Mitochondrial inherita 98.8 0.00033 7.1E-09 71.0 46.2 55 49-105 19-73 (932)
115 PRK14720 transcript cleavage f 98.7 7.5E-06 1.6E-10 85.2 26.6 281 215-568 30-312 (906)
116 KOG1128 Uncharacterized conser 98.7 2.8E-06 6E-11 83.4 21.6 221 283-527 395-616 (777)
117 KOG3081 Vesicle coat complex C 98.7 1.7E-05 3.6E-10 68.5 22.6 119 401-525 147-269 (299)
118 PRK10370 formate-dependent nit 98.7 1.4E-06 3.1E-11 75.5 16.5 119 52-210 52-173 (198)
119 PRK15179 Vi polysaccharide bio 98.7 9.6E-06 2.1E-10 83.7 24.2 186 9-210 23-217 (694)
120 TIGR03302 OM_YfiO outer membra 98.7 6.4E-06 1.4E-10 74.7 20.7 185 139-350 32-232 (235)
121 PRK10370 formate-dependent nit 98.6 8.1E-06 1.8E-10 70.9 20.0 125 369-497 52-179 (198)
122 COG5010 TadD Flp pilus assembl 98.6 1E-05 2.2E-10 69.9 19.7 159 360-524 70-228 (257)
123 COG4783 Putative Zn-dependent 98.6 6.5E-05 1.4E-09 70.8 26.4 240 80-350 207-454 (484)
124 COG5010 TadD Flp pilus assembl 98.6 1.4E-05 3E-10 69.1 20.2 156 327-486 72-227 (257)
125 TIGR03302 OM_YfiO outer membra 98.6 8.4E-06 1.8E-10 74.0 19.4 188 319-527 31-232 (235)
126 KOG3081 Vesicle coat complex C 98.6 2.9E-05 6.3E-10 67.1 20.7 252 296-569 18-278 (299)
127 PRK15359 type III secretion sy 98.6 8.4E-06 1.8E-10 66.8 17.2 108 394-504 27-134 (144)
128 PRK14720 transcript cleavage f 98.5 6E-05 1.3E-09 78.7 26.3 239 139-437 30-268 (906)
129 PRK15359 type III secretion sy 98.5 1.1E-05 2.4E-10 66.1 16.6 95 143-245 27-121 (144)
130 KOG3060 Uncharacterized conser 98.5 5.6E-05 1.2E-09 64.8 20.1 188 334-527 25-220 (289)
131 PRK15179 Vi polysaccharide bio 98.5 8.1E-05 1.8E-09 77.0 25.3 181 282-472 82-266 (694)
132 PF12854 PPR_1: PPR repeat 98.5 2.4E-07 5.2E-12 53.7 3.8 33 135-167 2-34 (34)
133 PF12854 PPR_1: PPR repeat 98.5 3.2E-07 6.9E-12 53.1 4.2 32 456-487 2-33 (34)
134 COG4783 Putative Zn-dependent 98.4 6.9E-05 1.5E-09 70.7 21.1 113 401-517 316-429 (484)
135 KOG3060 Uncharacterized conser 98.4 0.00037 8.1E-09 60.0 22.6 83 299-383 99-181 (289)
136 TIGR02552 LcrH_SycD type III s 98.4 1.7E-05 3.7E-10 64.7 14.5 110 61-210 5-114 (135)
137 TIGR02552 LcrH_SycD type III s 98.3 3.5E-05 7.5E-10 62.9 14.9 98 140-245 17-114 (135)
138 KOG1258 mRNA processing protei 98.2 0.0074 1.6E-07 59.1 31.3 176 390-573 296-481 (577)
139 KOG2041 WD40 repeat protein [G 98.2 0.0083 1.8E-07 59.4 29.4 42 55-103 679-720 (1189)
140 KOG2053 Mitochondrial inherita 98.2 0.013 2.8E-07 60.0 42.7 60 47-110 51-110 (932)
141 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 8.9E-05 1.9E-09 70.8 14.6 122 396-525 174-295 (395)
142 PF09976 TPR_21: Tetratricopep 98.1 0.00019 4E-09 59.2 14.9 115 153-276 24-143 (145)
143 PF09976 TPR_21: Tetratricopep 98.1 0.0003 6.5E-09 57.9 16.0 86 259-346 56-143 (145)
144 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 0.00044 9.5E-09 66.1 18.6 120 187-312 175-294 (395)
145 PF14559 TPR_19: Tetratricopep 98.0 1.7E-05 3.7E-10 55.5 5.5 64 50-117 2-65 (68)
146 TIGR00756 PPR pentatricopeptid 97.9 2.1E-05 4.7E-10 46.3 4.1 33 183-215 2-34 (35)
147 TIGR00756 PPR pentatricopeptid 97.9 3E-05 6.6E-10 45.6 4.5 33 463-495 2-34 (35)
148 TIGR02795 tol_pal_ybgF tol-pal 97.9 0.00072 1.6E-08 53.6 13.8 98 393-490 4-105 (119)
149 PRK02603 photosystem I assembl 97.9 0.00023 5E-09 60.7 11.4 117 426-566 35-153 (172)
150 KOG0550 Molecular chaperone (D 97.8 0.021 4.6E-07 53.2 24.0 91 329-420 257-350 (486)
151 cd00189 TPR Tetratricopeptide 97.8 0.00035 7.6E-09 52.6 11.3 94 143-244 3-96 (100)
152 PRK15363 pathogenicity island 97.8 0.0018 3.8E-08 52.4 15.2 95 394-490 38-132 (157)
153 PF13812 PPR_3: Pentatricopept 97.8 4.3E-05 9.4E-10 44.6 4.5 32 463-494 3-34 (34)
154 KOG0550 Molecular chaperone (D 97.8 0.017 3.7E-07 53.8 22.8 275 148-455 57-350 (486)
155 PF10037 MRP-S27: Mitochondria 97.8 0.00035 7.6E-09 67.0 12.8 122 352-473 62-185 (429)
156 PRK02603 photosystem I assembl 97.8 0.0012 2.5E-08 56.4 15.0 108 63-205 23-130 (172)
157 COG4235 Cytochrome c biogenesi 97.8 0.00081 1.8E-08 60.1 14.1 114 52-170 135-257 (287)
158 TIGR02795 tol_pal_ybgF tol-pal 97.8 0.00092 2E-08 52.9 13.5 100 142-245 4-105 (119)
159 cd00189 TPR Tetratricopeptide 97.8 0.00029 6.3E-09 53.1 10.2 93 395-489 4-96 (100)
160 PF12895 Apc3: Anaphase-promot 97.8 3.4E-05 7.3E-10 56.6 4.6 83 52-166 2-84 (84)
161 PF13812 PPR_3: Pentatricopept 97.8 4.3E-05 9.4E-10 44.6 4.1 32 183-214 3-34 (34)
162 PRK15363 pathogenicity island 97.8 0.00066 1.4E-08 54.8 11.7 95 143-245 38-132 (157)
163 PRK10866 outer membrane biogen 97.8 0.0034 7.4E-08 56.5 17.8 54 49-104 42-98 (243)
164 KOG0553 TPR repeat-containing 97.8 0.00022 4.7E-09 63.2 9.8 92 45-169 87-178 (304)
165 PF13432 TPR_16: Tetratricopep 97.8 2.9E-05 6.3E-10 53.7 3.5 55 48-104 6-60 (65)
166 CHL00033 ycf3 photosystem I as 97.7 0.00088 1.9E-08 56.9 13.0 116 55-205 15-137 (168)
167 PF12895 Apc3: Anaphase-promot 97.7 3.5E-05 7.6E-10 56.5 3.8 81 404-486 2-83 (84)
168 COG3898 Uncharacterized membra 97.7 0.039 8.5E-07 51.1 29.9 292 219-527 85-392 (531)
169 KOG0553 TPR repeat-containing 97.7 0.00031 6.6E-09 62.3 9.9 100 399-503 89-189 (304)
170 PF07079 DUF1347: Protein of u 97.7 0.047 1E-06 51.7 42.6 435 85-541 16-530 (549)
171 PF10037 MRP-S27: Mitochondria 97.7 0.00045 9.8E-09 66.3 11.9 122 178-299 63-186 (429)
172 PF05843 Suf: Suppressor of fo 97.7 0.00072 1.6E-08 62.5 12.8 145 357-506 2-150 (280)
173 PLN03088 SGT1, suppressor of 97.7 0.0014 3.1E-08 62.9 15.0 85 368-454 14-98 (356)
174 PLN03088 SGT1, suppressor of 97.7 0.002 4.3E-08 62.0 15.9 92 398-491 9-100 (356)
175 PF05843 Suf: Suppressor of fo 97.7 0.0016 3.4E-08 60.3 14.4 145 322-471 2-150 (280)
176 CHL00033 ycf3 photosystem I as 97.6 0.0017 3.7E-08 55.1 13.6 95 391-486 35-138 (168)
177 PF14938 SNAP: Soluble NSF att 97.6 0.0072 1.6E-07 56.2 18.8 122 366-487 124-263 (282)
178 PRK10866 outer membrane biogen 97.6 0.042 9.1E-07 49.5 22.9 57 326-382 180-238 (243)
179 KOG2041 WD40 repeat protein [G 97.6 0.093 2E-06 52.4 28.3 158 153-348 747-905 (1189)
180 PF08579 RPM2: Mitochondrial r 97.6 0.0012 2.6E-08 49.3 10.0 78 185-262 29-115 (120)
181 COG4700 Uncharacterized protei 97.6 0.02 4.4E-07 47.1 17.7 126 388-517 86-214 (251)
182 PF14938 SNAP: Soluble NSF att 97.6 0.01 2.2E-07 55.3 18.7 25 143-167 38-62 (282)
183 PF08579 RPM2: Mitochondrial r 97.6 0.0015 3.3E-08 48.7 10.3 78 431-508 30-116 (120)
184 PRK10153 DNA-binding transcrip 97.5 0.0055 1.2E-07 61.6 17.4 62 461-526 420-481 (517)
185 PRK10153 DNA-binding transcrip 97.5 0.0097 2.1E-07 59.9 18.7 141 354-499 335-489 (517)
186 PF01535 PPR: PPR repeat; Int 97.5 0.00015 3.2E-09 41.2 3.5 29 183-211 2-30 (31)
187 PF01535 PPR: PPR repeat; Int 97.4 0.0002 4.2E-09 40.7 3.4 29 463-491 2-30 (31)
188 PF13432 TPR_16: Tetratricopep 97.4 0.00038 8.2E-09 48.0 5.5 56 433-489 4-59 (65)
189 PF13525 YfiO: Outer membrane 97.4 0.02 4.4E-07 50.1 17.6 69 74-170 4-72 (203)
190 KOG1130 Predicted G-alpha GTPa 97.4 0.0014 3E-08 60.5 10.0 133 393-527 197-344 (639)
191 COG4700 Uncharacterized protei 97.4 0.064 1.4E-06 44.3 19.2 131 178-310 86-217 (251)
192 PF12688 TPR_5: Tetratrico pep 97.3 0.019 4.2E-07 44.7 14.5 92 187-278 7-102 (120)
193 KOG1130 Predicted G-alpha GTPa 97.3 0.0088 1.9E-07 55.5 14.4 265 46-313 24-342 (639)
194 PF14559 TPR_19: Tetratricopep 97.3 0.00076 1.6E-08 47.0 6.3 53 151-210 2-54 (68)
195 COG4235 Cytochrome c biogenesi 97.3 0.017 3.7E-07 51.9 15.9 100 138-245 154-256 (287)
196 COG4105 ComL DNA uptake lipopr 97.3 0.03 6.5E-07 49.2 17.0 61 46-106 41-102 (254)
197 KOG1538 Uncharacterized conser 97.3 0.074 1.6E-06 52.6 20.9 56 286-350 747-802 (1081)
198 PF13525 YfiO: Outer membrane 97.3 0.051 1.1E-06 47.6 18.6 64 143-210 8-71 (203)
199 PF12688 TPR_5: Tetratrico pep 97.3 0.016 3.5E-07 45.2 13.5 89 398-488 8-102 (120)
200 PF13414 TPR_11: TPR repeat; P 97.3 0.00074 1.6E-08 47.2 5.6 63 426-489 3-66 (69)
201 PF13414 TPR_11: TPR repeat; P 97.3 0.0012 2.5E-08 46.2 6.4 63 140-209 3-66 (69)
202 PF13371 TPR_9: Tetratricopept 97.2 0.0013 2.8E-08 46.6 6.5 61 48-112 4-64 (73)
203 PF07079 DUF1347: Protein of u 97.2 0.21 4.6E-06 47.5 42.5 441 47-503 14-532 (549)
204 PF04840 Vps16_C: Vps16, C-ter 97.1 0.23 5E-06 46.7 24.1 105 393-517 179-283 (319)
205 COG3898 Uncharacterized membra 97.1 0.24 5.2E-06 46.2 30.3 119 294-420 271-392 (531)
206 COG1729 Uncharacterized protei 97.0 0.0074 1.6E-07 53.4 10.5 94 49-170 151-245 (262)
207 KOG2796 Uncharacterized conser 97.0 0.21 4.5E-06 43.9 19.4 132 218-350 179-315 (366)
208 PRK10803 tol-pal system protei 97.0 0.012 2.7E-07 53.3 11.9 61 464-526 183-245 (263)
209 PF06239 ECSIT: Evolutionarily 97.0 0.024 5.1E-07 48.4 12.3 33 478-510 120-152 (228)
210 PF13281 DUF4071: Domain of un 96.9 0.2 4.4E-06 47.5 19.1 29 497-527 306-334 (374)
211 PF06239 ECSIT: Evolutionarily 96.9 0.014 3.1E-07 49.7 10.4 104 179-301 45-153 (228)
212 COG5107 RNA14 Pre-mRNA 3'-end 96.9 0.43 9.4E-06 45.4 35.6 131 356-489 397-530 (660)
213 PRK10803 tol-pal system protei 96.9 0.024 5.2E-07 51.5 12.7 99 143-245 146-246 (263)
214 PF03704 BTAD: Bacterial trans 96.8 0.065 1.4E-06 44.2 14.3 72 428-500 64-140 (146)
215 PF13424 TPR_12: Tetratricopep 96.8 0.0019 4E-08 46.5 4.3 69 140-209 5-74 (78)
216 KOG1538 Uncharacterized conser 96.8 0.19 4.2E-06 49.8 18.6 87 392-489 748-845 (1081)
217 PRK15331 chaperone protein Sic 96.8 0.16 3.4E-06 41.7 15.2 90 398-489 44-133 (165)
218 COG3118 Thioredoxin domain-con 96.7 0.13 2.8E-06 46.2 15.6 139 49-196 144-287 (304)
219 PRK15331 chaperone protein Sic 96.7 0.14 3E-06 42.0 14.5 89 364-454 45-133 (165)
220 KOG2796 Uncharacterized conser 96.7 0.4 8.6E-06 42.2 22.9 132 253-385 179-315 (366)
221 COG5107 RNA14 Pre-mRNA 3'-end 96.6 0.67 1.4E-05 44.2 37.3 437 61-527 30-531 (660)
222 PF13371 TPR_9: Tetratricopept 96.6 0.013 2.9E-07 41.3 7.5 56 148-210 3-58 (73)
223 KOG1585 Protein required for f 96.6 0.3 6.5E-06 42.5 16.3 206 75-308 31-249 (308)
224 PF03704 BTAD: Bacterial trans 96.6 0.012 2.5E-07 48.6 8.2 71 142-219 64-139 (146)
225 KOG1258 mRNA processing protei 96.6 0.87 1.9E-05 45.3 36.1 185 320-510 296-489 (577)
226 KOG2114 Vacuolar assembly/sort 96.6 1.1 2.4E-05 46.3 26.0 170 51-242 346-516 (933)
227 KOG2610 Uncharacterized conser 96.5 0.25 5.5E-06 45.0 15.7 158 49-242 113-273 (491)
228 PF13281 DUF4071: Domain of un 96.4 0.88 1.9E-05 43.3 21.2 30 425-454 304-333 (374)
229 PF13424 TPR_12: Tetratricopep 96.4 0.013 2.9E-07 42.0 6.5 61 428-488 7-73 (78)
230 PF13512 TPR_18: Tetratricopep 96.4 0.038 8.3E-07 44.0 9.1 119 431-571 15-137 (142)
231 COG4105 ComL DNA uptake lipopr 96.1 0.93 2E-05 40.2 20.2 178 187-384 40-232 (254)
232 PLN03098 LPA1 LOW PSII ACCUMUL 96.1 0.084 1.8E-06 50.8 11.3 66 388-455 72-141 (453)
233 PF13431 TPR_17: Tetratricopep 96.0 0.01 2.2E-07 34.2 3.3 32 62-95 2-33 (34)
234 KOG0543 FKBP-type peptidyl-pro 96.0 0.059 1.3E-06 50.5 9.8 59 464-525 260-318 (397)
235 PF12921 ATP13: Mitochondrial 96.0 0.14 3E-06 40.4 10.6 86 139-224 1-96 (126)
236 PLN03098 LPA1 LOW PSII ACCUMUL 96.0 0.25 5.4E-06 47.7 14.1 66 138-210 73-141 (453)
237 KOG1585 Protein required for f 95.9 1 2.2E-05 39.3 16.7 85 218-312 33-117 (308)
238 KOG0543 FKBP-type peptidyl-pro 95.9 0.25 5.3E-06 46.5 13.4 92 188-280 215-320 (397)
239 PRK11906 transcriptional regul 95.9 0.83 1.8E-05 44.3 17.1 111 155-276 319-432 (458)
240 PF12921 ATP13: Mitochondrial 95.9 0.26 5.7E-06 38.9 11.8 53 457-509 48-101 (126)
241 KOG4555 TPR repeat-containing 95.9 0.069 1.5E-06 41.2 7.9 98 47-173 51-148 (175)
242 COG1729 Uncharacterized protei 95.8 0.12 2.6E-06 46.0 10.5 89 437-527 152-244 (262)
243 PF10300 DUF3808: Protein of u 95.8 0.39 8.4E-06 48.2 15.5 98 144-243 192-294 (468)
244 PF10300 DUF3808: Protein of u 95.8 0.93 2E-05 45.6 18.0 160 325-488 192-374 (468)
245 PF04184 ST7: ST7 protein; In 95.8 2.1 4.6E-05 41.8 21.0 116 87-209 180-323 (539)
246 PF04053 Coatomer_WDAD: Coatom 95.8 0.37 8.1E-06 47.6 14.8 99 296-415 328-426 (443)
247 COG3118 Thioredoxin domain-con 95.7 1.5 3.3E-05 39.6 17.4 148 148-304 142-290 (304)
248 PF13512 TPR_18: Tetratricopep 95.7 0.14 3E-06 40.9 9.4 59 48-106 19-78 (142)
249 PF04184 ST7: ST7 protein; In 95.7 0.68 1.5E-05 45.0 15.4 65 426-490 259-324 (539)
250 KOG2280 Vacuolar assembly/sort 95.6 3.2 7E-05 42.6 33.5 342 134-517 426-791 (829)
251 KOG1941 Acetylcholine receptor 95.5 1.1 2.4E-05 41.5 15.5 236 49-312 16-272 (518)
252 COG4649 Uncharacterized protei 95.5 1.1 2.5E-05 36.8 13.9 121 50-170 69-197 (221)
253 KOG2610 Uncharacterized conser 95.5 0.46 9.9E-06 43.4 12.9 153 297-452 114-273 (491)
254 PF04840 Vps16_C: Vps16, C-ter 95.4 2.4 5.1E-05 40.0 29.7 79 328-416 184-262 (319)
255 KOG4555 TPR repeat-containing 95.4 0.67 1.5E-05 36.0 11.7 92 189-281 51-145 (175)
256 PRK11906 transcriptional regul 95.4 2.3 4.9E-05 41.4 17.8 116 337-454 274-400 (458)
257 PF04053 Coatomer_WDAD: Coatom 95.2 0.5 1.1E-05 46.7 13.7 130 143-311 298-427 (443)
258 PF13428 TPR_14: Tetratricopep 95.0 0.087 1.9E-06 32.6 5.1 38 464-502 4-41 (44)
259 KOG2114 Vacuolar assembly/sort 94.9 5.9 0.00013 41.4 23.7 148 36-208 365-517 (933)
260 PF13428 TPR_14: Tetratricopep 94.9 0.095 2.1E-06 32.4 5.0 41 141-188 2-42 (44)
261 COG4785 NlpI Lipoprotein NlpI, 94.9 2.3 4.9E-05 36.6 19.7 85 49-135 75-163 (297)
262 KOG2280 Vacuolar assembly/sort 94.8 5.5 0.00012 41.0 29.3 368 43-451 393-795 (829)
263 COG0457 NrfG FOG: TPR repeat [ 94.8 2.8 6E-05 37.4 30.3 199 287-489 60-264 (291)
264 COG0457 NrfG FOG: TPR repeat [ 94.8 2.8 6.1E-05 37.4 28.9 224 299-527 36-265 (291)
265 PF08631 SPO22: Meiosis protei 94.7 3.6 7.9E-05 38.1 26.1 62 288-350 86-150 (278)
266 PF08631 SPO22: Meiosis protei 94.7 3.7 8E-05 38.1 26.0 167 50-251 4-192 (278)
267 PF09205 DUF1955: Domain of un 94.7 1.7 3.6E-05 34.1 14.8 58 398-456 93-150 (161)
268 KOG1941 Acetylcholine receptor 94.6 2.6 5.6E-05 39.3 15.2 229 226-454 16-274 (518)
269 KOG1586 Protein required for f 94.6 2.9 6.2E-05 36.4 14.4 56 440-495 128-188 (288)
270 PF09205 DUF1955: Domain of un 94.3 2 4.3E-05 33.6 15.9 64 358-422 88-151 (161)
271 smart00299 CLH Clathrin heavy 94.2 2.6 5.5E-05 34.3 15.8 40 363-403 14-53 (140)
272 COG2976 Uncharacterized protei 94.1 0.54 1.2E-05 39.5 9.1 92 468-567 96-193 (207)
273 smart00299 CLH Clathrin heavy 93.9 2.9 6.4E-05 33.9 15.3 126 184-332 10-136 (140)
274 KOG1920 IkappaB kinase complex 93.7 13 0.00028 40.8 22.8 31 178-209 788-820 (1265)
275 PF13170 DUF4003: Protein of u 93.6 3.2 6.9E-05 38.7 14.2 133 122-259 79-225 (297)
276 COG3629 DnrI DNA-binding trans 93.3 0.93 2E-05 41.2 9.9 74 141-221 154-232 (280)
277 KOG1920 IkappaB kinase complex 93.2 15 0.00034 40.2 25.7 43 235-279 776-820 (1265)
278 PF13176 TPR_7: Tetratricopept 93.2 0.2 4.2E-06 29.3 3.8 26 77-102 1-26 (36)
279 COG3629 DnrI DNA-binding trans 93.1 1.4 3E-05 40.1 10.7 78 427-505 154-236 (280)
280 PF09613 HrpB1_HrpK: Bacterial 93.0 4.4 9.6E-05 33.3 12.8 52 437-490 21-73 (160)
281 KOG3941 Intermediate in Toll s 92.8 1.1 2.4E-05 40.0 9.4 35 478-512 140-174 (406)
282 PF13176 TPR_7: Tetratricopept 92.8 0.29 6.2E-06 28.6 4.1 25 464-488 2-26 (36)
283 KOG2396 HAT (Half-A-TPR) repea 92.5 12 0.00025 36.9 38.6 77 55-135 87-170 (568)
284 PF10602 RPN7: 26S proteasome 92.4 2.7 5.8E-05 35.8 11.2 62 218-279 38-101 (177)
285 KOG1550 Extracellular protein 92.3 16 0.00034 37.9 28.1 273 197-490 228-538 (552)
286 KOG4648 Uncharacterized conser 92.1 0.18 4E-06 45.9 3.9 23 546-568 178-200 (536)
287 KOG2066 Vacuolar assembly/sort 92.1 17 0.00037 37.9 25.6 55 49-103 366-420 (846)
288 PF10345 Cohesin_load: Cohesin 91.9 19 0.00041 38.0 34.9 183 123-312 39-251 (608)
289 PF07035 Mic1: Colon cancer-as 91.9 6.6 0.00014 32.7 15.7 101 237-347 15-115 (167)
290 KOG0890 Protein kinase of the 91.8 35 0.00075 40.8 25.3 324 145-491 1388-1732(2382)
291 PF13431 TPR_17: Tetratricopep 91.7 0.22 4.8E-06 28.6 2.7 24 178-201 10-33 (34)
292 PF00515 TPR_1: Tetratricopept 91.7 0.43 9.3E-06 27.3 4.0 30 75-104 1-30 (34)
293 PF07719 TPR_2: Tetratricopept 91.6 0.44 9.6E-06 27.1 4.0 29 76-104 2-30 (34)
294 COG2909 MalT ATP-dependent tra 91.4 22 0.00048 37.8 25.2 226 296-523 425-684 (894)
295 PF07035 Mic1: Colon cancer-as 91.0 8.3 0.00018 32.1 15.0 135 201-349 14-148 (167)
296 PF06552 TOM20_plant: Plant sp 91.0 5 0.00011 33.6 10.6 116 55-211 7-137 (186)
297 PF10602 RPN7: 26S proteasome 91.0 2.1 4.6E-05 36.3 9.1 96 428-525 38-140 (177)
298 COG4649 Uncharacterized protei 90.8 8.6 0.00019 31.9 14.3 123 367-489 69-195 (221)
299 PF13170 DUF4003: Protein of u 90.6 15 0.00032 34.4 19.5 130 197-328 78-224 (297)
300 KOG3941 Intermediate in Toll s 90.5 3.4 7.3E-05 37.1 9.8 114 55-168 46-187 (406)
301 KOG1550 Extracellular protein 90.4 25 0.00053 36.5 25.4 17 230-246 378-394 (552)
302 PF02259 FAT: FAT domain; Int 90.2 18 0.0004 34.9 23.0 65 355-419 145-212 (352)
303 PF04097 Nic96: Nup93/Nic96; 89.4 31 0.00068 36.3 19.0 47 181-229 112-158 (613)
304 PF00515 TPR_1: Tetratricopept 89.3 1.1 2.4E-05 25.5 4.3 25 464-488 4-28 (34)
305 PF04097 Nic96: Nup93/Nic96; 89.2 32 0.0007 36.2 21.7 43 145-194 116-158 (613)
306 KOG2396 HAT (Half-A-TPR) repea 88.9 25 0.00055 34.7 35.3 93 430-527 464-559 (568)
307 COG4785 NlpI Lipoprotein NlpI, 88.8 15 0.00033 31.8 17.3 30 462-491 238-267 (297)
308 KOG4234 TPR repeat-containing 88.3 7.5 0.00016 33.1 9.8 90 399-490 103-197 (271)
309 KOG4507 Uncharacterized conser 88.3 0.61 1.3E-05 46.0 4.1 101 472-578 618-721 (886)
310 KOG4234 TPR repeat-containing 88.2 13 0.00029 31.7 11.1 95 363-461 102-201 (271)
311 KOG4570 Uncharacterized conser 88.1 8.3 0.00018 35.4 10.6 48 441-488 115-162 (418)
312 COG2909 MalT ATP-dependent tra 87.8 42 0.00092 35.9 28.5 227 260-486 424-684 (894)
313 PF07719 TPR_2: Tetratricopept 87.8 1.6 3.4E-05 24.7 4.3 25 465-489 5-29 (34)
314 PF09613 HrpB1_HrpK: Bacterial 87.7 14 0.00031 30.4 13.8 18 436-453 54-71 (160)
315 KOG2300 Uncharacterized conser 87.7 30 0.00065 34.1 32.5 380 152-541 59-526 (629)
316 PF13174 TPR_6: Tetratricopept 87.7 0.69 1.5E-05 26.0 2.7 28 77-104 2-29 (33)
317 KOG0276 Vesicle coat complex C 87.5 9.9 0.00022 38.2 11.6 44 228-277 649-692 (794)
318 COG1747 Uncharacterized N-term 86.8 35 0.00075 33.9 21.1 180 178-365 63-248 (711)
319 PF13374 TPR_10: Tetratricopep 86.7 1.7 3.6E-05 26.1 4.2 29 75-103 2-30 (42)
320 KOG1464 COP9 signalosome, subu 86.4 24 0.00052 31.7 18.6 162 49-243 37-218 (440)
321 KOG2062 26S proteasome regulat 86.3 46 0.00099 34.8 27.9 155 80-245 64-239 (929)
322 KOG0276 Vesicle coat complex C 86.3 12 0.00027 37.6 11.5 99 296-415 647-745 (794)
323 cd00923 Cyt_c_Oxidase_Va Cytoc 86.2 6.5 0.00014 28.9 7.3 45 444-488 25-69 (103)
324 PRK15180 Vi polysaccharide bio 86.0 4.9 0.00011 39.0 8.5 126 147-281 296-421 (831)
325 cd00923 Cyt_c_Oxidase_Va Cytoc 85.7 6 0.00013 29.1 6.9 60 123-189 25-84 (103)
326 PF11207 DUF2989: Protein of u 85.7 9.3 0.0002 32.8 9.3 79 191-271 117-198 (203)
327 COG4455 ImpE Protein of avirul 85.6 6.6 0.00014 33.9 8.2 75 144-225 5-81 (273)
328 PF10345 Cohesin_load: Cohesin 85.2 54 0.0012 34.6 41.1 191 332-525 372-604 (608)
329 PF13374 TPR_10: Tetratricopep 85.1 2.5 5.4E-05 25.3 4.5 28 462-489 3-30 (42)
330 PF04910 Tcf25: Transcriptiona 85.1 38 0.00083 32.8 17.2 168 388-570 37-230 (360)
331 KOG4648 Uncharacterized conser 85.1 3.1 6.8E-05 38.3 6.6 97 396-496 102-198 (536)
332 KOG4570 Uncharacterized conser 85.0 7 0.00015 35.8 8.6 102 281-384 59-163 (418)
333 PF02284 COX5A: Cytochrome c o 84.6 6.3 0.00014 29.3 6.6 60 123-189 28-87 (108)
334 COG3947 Response regulator con 84.3 33 0.00071 31.4 16.2 42 56-100 150-191 (361)
335 PF11207 DUF2989: Protein of u 83.9 15 0.00033 31.5 9.7 20 495-514 177-196 (203)
336 PF13181 TPR_8: Tetratricopept 83.3 3.3 7.1E-05 23.4 4.2 29 76-104 2-30 (34)
337 KOG2471 TPR repeat-containing 83.0 51 0.0011 32.6 13.8 41 193-233 29-69 (696)
338 PRK09687 putative lyase; Provi 82.9 40 0.00087 31.3 27.6 79 138-228 35-117 (280)
339 PF02259 FAT: FAT domain; Int 82.6 48 0.001 31.9 24.7 67 319-385 144-213 (352)
340 KOG2063 Vacuolar assembly/sort 81.9 84 0.0018 34.3 16.4 27 183-209 506-532 (877)
341 PF02284 COX5A: Cytochrome c o 81.8 9.6 0.00021 28.4 6.7 45 445-489 29-73 (108)
342 PF07721 TPR_4: Tetratricopept 81.3 2.3 5E-05 22.5 2.7 23 77-99 3-25 (26)
343 PF06552 TOM20_plant: Plant sp 80.7 16 0.00036 30.7 8.5 109 156-281 7-137 (186)
344 PF13181 TPR_8: Tetratricopept 80.6 5.3 0.00011 22.5 4.4 27 463-489 3-29 (34)
345 smart00386 HAT HAT (Half-A-TPR 80.4 5 0.00011 22.1 4.3 30 53-84 1-30 (33)
346 KOG4642 Chaperone-dependent E3 79.0 45 0.00097 29.6 10.9 84 45-132 16-105 (284)
347 PF13929 mRNA_stabil: mRNA sta 78.9 53 0.0012 30.2 16.1 61 214-274 200-261 (292)
348 KOG2471 TPR repeat-containing 78.9 42 0.00091 33.1 11.7 41 152-198 29-69 (696)
349 PF04910 Tcf25: Transcriptiona 78.9 66 0.0014 31.2 20.7 120 67-209 34-167 (360)
350 COG3947 Response regulator con 78.8 53 0.0011 30.1 17.1 58 254-312 282-339 (361)
351 PF08424 NRDE-2: NRDE-2, neces 78.8 62 0.0013 30.8 18.2 120 61-208 7-129 (321)
352 PF13174 TPR_6: Tetratricopept 78.6 1.7 3.8E-05 24.3 1.8 20 469-488 8-27 (33)
353 KOG4507 Uncharacterized conser 78.5 8.2 0.00018 38.6 7.2 103 401-505 617-719 (886)
354 COG4455 ImpE Protein of avirul 77.8 19 0.00041 31.3 8.2 75 185-260 5-81 (273)
355 PRK09687 putative lyase; Provi 77.7 60 0.0013 30.1 27.7 58 390-454 205-262 (280)
356 PF00637 Clathrin: Region in C 77.6 1.1 2.5E-05 36.5 1.2 54 257-310 13-66 (143)
357 PF07575 Nucleopor_Nup85: Nup8 77.0 1E+02 0.0022 32.3 20.5 27 75-102 149-175 (566)
358 TIGR02561 HrpB1_HrpK type III 76.7 39 0.00085 27.5 12.0 51 152-210 22-73 (153)
359 TIGR03504 FimV_Cterm FimV C-te 76.0 8.1 0.00018 23.8 4.2 21 258-278 6-26 (44)
360 TIGR03504 FimV_Cterm FimV C-te 76.0 6 0.00013 24.3 3.7 26 80-105 4-29 (44)
361 KOG2422 Uncharacterized conser 75.8 97 0.0021 31.5 16.2 51 402-452 353-404 (665)
362 KOG3824 Huntingtin interacting 75.5 2.1 4.6E-05 38.7 2.3 62 506-574 126-191 (472)
363 COG0790 FOG: TPR repeat, SEL1 75.4 71 0.0015 29.8 21.5 154 45-211 47-221 (292)
364 PF08311 Mad3_BUB1_I: Mad3/BUB 75.2 39 0.00086 26.7 11.4 109 58-166 4-125 (126)
365 PF08424 NRDE-2: NRDE-2, neces 75.0 79 0.0017 30.1 17.5 118 373-492 48-185 (321)
366 COG2976 Uncharacterized protei 74.7 54 0.0012 28.1 15.1 55 434-490 134-188 (207)
367 PF00637 Clathrin: Region in C 72.6 1.3 2.9E-05 36.1 0.3 84 187-277 13-96 (143)
368 smart00028 TPR Tetratricopepti 72.1 7.2 0.00016 20.8 3.5 29 76-104 2-30 (34)
369 KOG4642 Chaperone-dependent E3 72.0 62 0.0013 28.8 10.0 118 366-487 20-143 (284)
370 PF07163 Pex26: Pex26 protein; 71.3 69 0.0015 29.3 10.4 87 363-449 90-181 (309)
371 KOG1586 Protein required for f 71.2 75 0.0016 28.2 20.5 48 51-99 26-78 (288)
372 KOG1464 COP9 signalosome, subu 70.8 82 0.0018 28.5 17.1 51 263-313 39-92 (440)
373 PF12862 Apc5: Anaphase-promot 70.6 14 0.00031 27.4 5.5 55 50-104 9-70 (94)
374 TIGR02561 HrpB1_HrpK type III 70.3 58 0.0013 26.6 12.6 20 261-280 54-73 (153)
375 COG1747 Uncharacterized N-term 69.9 1.3E+02 0.0027 30.3 25.2 177 250-434 65-247 (711)
376 COG0790 FOG: TPR repeat, SEL1 66.9 1.1E+02 0.0024 28.5 25.0 85 409-500 173-276 (292)
377 PF14853 Fis1_TPR_C: Fis1 C-te 64.8 24 0.00053 22.8 4.8 32 79-112 5-36 (53)
378 PF04190 DUF410: Protein of un 64.7 1.1E+02 0.0025 27.9 19.0 28 178-205 87-114 (260)
379 COG4976 Predicted methyltransf 64.4 47 0.001 29.3 7.7 56 48-105 4-59 (287)
380 PF07163 Pex26: Pex26 protein; 64.3 1.2E+02 0.0025 27.9 14.0 87 258-344 90-181 (309)
381 PRK11619 lytic murein transgly 64.0 2E+02 0.0044 30.6 32.8 22 504-527 415-436 (644)
382 PRK10941 hypothetical protein; 63.7 32 0.00069 31.6 7.2 66 37-104 179-244 (269)
383 KOG2066 Vacuolar assembly/sort 63.5 2.1E+02 0.0045 30.5 28.3 75 141-228 393-467 (846)
384 KOG0545 Aryl-hydrocarbon recep 62.9 30 0.00065 30.7 6.4 70 33-104 224-293 (329)
385 KOG2422 Uncharacterized conser 62.6 1.9E+02 0.0041 29.6 19.8 165 51-244 250-447 (665)
386 PHA02537 M terminase endonucle 62.6 69 0.0015 28.5 8.8 105 48-171 92-209 (230)
387 PF09986 DUF2225: Uncharacteri 62.5 66 0.0014 28.4 8.8 52 55-106 141-196 (214)
388 KOG4077 Cytochrome c oxidase, 62.1 64 0.0014 25.3 7.3 45 445-489 68-112 (149)
389 PRK10941 hypothetical protein; 62.1 58 0.0013 29.9 8.6 59 466-527 186-244 (269)
390 KOG2034 Vacuolar sorting prote 61.4 2.4E+02 0.0053 30.5 22.6 272 48-347 367-687 (911)
391 PF10579 Rapsyn_N: Rapsyn N-te 58.6 38 0.00082 24.0 5.1 14 468-481 50-63 (80)
392 PF10579 Rapsyn_N: Rapsyn N-te 58.2 14 0.00031 26.0 3.1 51 49-99 16-67 (80)
393 KOG0687 26S proteasome regulat 56.8 1.7E+02 0.0038 27.4 14.8 174 230-405 36-230 (393)
394 KOG1308 Hsp70-interacting prot 56.8 6.8 0.00015 36.4 1.7 120 401-527 124-244 (377)
395 KOG4077 Cytochrome c oxidase, 56.4 75 0.0016 25.0 6.8 47 123-169 67-113 (149)
396 PF12862 Apc5: Anaphase-promot 55.3 83 0.0018 23.2 7.3 24 466-489 46-69 (94)
397 PRK11619 lytic murein transgly 55.1 2.9E+02 0.0063 29.5 39.5 202 265-486 255-464 (644)
398 PF13929 mRNA_stabil: mRNA sta 54.8 1.8E+02 0.0039 26.9 16.9 116 195-310 142-262 (292)
399 PF14689 SPOB_a: Sensor_kinase 54.8 36 0.00078 22.8 4.6 30 180-209 22-51 (62)
400 KOG3364 Membrane protein invol 54.6 43 0.00093 26.7 5.4 56 52-110 48-104 (149)
401 PF09670 Cas_Cas02710: CRISPR- 53.3 79 0.0017 30.9 8.5 57 398-455 138-198 (379)
402 PF14689 SPOB_a: Sensor_kinase 52.3 42 0.0009 22.5 4.5 24 465-488 27-50 (62)
403 cd00280 TRFH Telomeric Repeat 52.1 1.2E+02 0.0025 25.9 7.8 22 433-454 118-139 (200)
404 KOG0991 Replication factor C, 51.8 1.8E+02 0.0038 26.0 12.9 85 144-242 134-218 (333)
405 cd00280 TRFH Telomeric Repeat 51.2 1.2E+02 0.0027 25.7 7.8 67 442-511 85-158 (200)
406 COG5191 Uncharacterized conser 51.2 14 0.00031 33.8 2.8 63 460-525 106-169 (435)
407 KOG0376 Serine-threonine phosp 50.9 35 0.00076 33.6 5.5 102 49-191 14-115 (476)
408 PRK12798 chemotaxis protein; R 50.4 2.6E+02 0.0056 27.5 22.6 84 299-382 125-211 (421)
409 KOG0991 Replication factor C, 49.5 1.9E+02 0.0042 25.8 12.8 128 325-461 134-273 (333)
410 KOG0128 RNA-binding protein SA 49.0 3.8E+02 0.0082 29.0 34.1 107 58-169 98-219 (881)
411 PF14853 Fis1_TPR_C: Fis1 C-te 48.6 72 0.0016 20.6 5.6 20 470-489 10-29 (53)
412 KOG4279 Serine/threonine prote 48.6 2.8E+02 0.006 29.5 11.2 231 303-564 145-397 (1226)
413 PF11846 DUF3366: Domain of un 48.1 98 0.0021 26.7 7.6 32 458-489 141-172 (193)
414 PF10366 Vps39_1: Vacuolar sor 48.0 1.2E+02 0.0025 23.3 6.9 27 323-349 41-67 (108)
415 PRK15180 Vi polysaccharide bio 48.0 3E+02 0.0064 27.5 29.6 117 50-170 300-421 (831)
416 PF07575 Nucleopor_Nup85: Nup8 47.6 1.8E+02 0.0039 30.5 10.6 21 440-460 509-529 (566)
417 KOG0292 Vesicle coat complex C 47.5 1.3E+02 0.0028 32.4 9.0 112 180-315 671-782 (1202)
418 KOG0376 Serine-threonine phosp 47.3 45 0.00098 32.9 5.6 89 328-419 11-100 (476)
419 PF14561 TPR_20: Tetratricopep 47.2 1.1E+02 0.0024 22.4 9.4 46 58-105 7-52 (90)
420 KOG1839 Uncharacterized protei 45.9 1.7E+02 0.0037 33.1 10.1 143 74-239 972-1122(1236)
421 PF11846 DUF3366: Domain of un 45.9 70 0.0015 27.6 6.3 45 57-104 129-173 (193)
422 PRK10564 maltose regulon perip 45.9 45 0.00097 30.8 5.1 38 463-500 259-296 (303)
423 PRK13342 recombination factor 45.8 3.2E+02 0.0069 27.2 18.8 32 334-365 243-274 (413)
424 KOG4521 Nuclear pore complex, 45.7 5E+02 0.011 29.5 14.5 55 254-309 986-1044(1480)
425 PF11848 DUF3368: Domain of un 45.5 75 0.0016 19.9 5.2 32 472-503 13-44 (48)
426 PF14561 TPR_20: Tetratricopep 45.0 1.2E+02 0.0027 22.2 8.6 54 178-231 19-73 (90)
427 KOG2581 26S proteasome regulat 44.7 1.7E+02 0.0036 28.5 8.5 135 425-568 125-282 (493)
428 KOG1114 Tripeptidyl peptidase 44.6 4.7E+02 0.01 28.9 16.7 122 152-300 1159-1281(1304)
429 PF11817 Foie-gras_1: Foie gra 44.4 1.5E+02 0.0032 27.0 8.4 59 429-487 181-244 (247)
430 COG0735 Fur Fe2+/Zn2+ uptake r 43.8 1.4E+02 0.0031 24.4 7.3 25 258-282 27-51 (145)
431 KOG0890 Protein kinase of the 43.8 7.3E+02 0.016 30.8 34.1 363 186-568 1388-1790(2382)
432 COG0735 Fur Fe2+/Zn2+ uptake r 43.5 1.5E+02 0.0033 24.1 7.5 65 448-513 8-72 (145)
433 cd08819 CARD_MDA5_2 Caspase ac 42.9 1.3E+02 0.0028 21.9 6.7 66 124-201 21-86 (88)
434 KOG1308 Hsp70-interacting prot 41.5 19 0.00042 33.6 2.1 88 152-248 126-214 (377)
435 COG5159 RPN6 26S proteasome re 41.5 2.9E+02 0.0063 25.5 21.6 199 145-349 8-234 (421)
436 PF09454 Vps23_core: Vps23 cor 40.6 65 0.0014 21.9 4.0 46 461-507 8-53 (65)
437 PF02184 HAT: HAT (Half-A-TPR) 40.4 70 0.0015 18.1 3.5 26 54-82 2-27 (32)
438 PF07720 TPR_3: Tetratricopept 40.2 76 0.0016 18.5 4.0 24 76-99 2-25 (36)
439 KOG3824 Huntingtin interacting 40.2 66 0.0014 29.7 5.1 53 50-104 127-179 (472)
440 KOG4521 Nuclear pore complex, 40.2 6.1E+02 0.013 28.9 15.7 124 358-484 985-1125(1480)
441 PF09670 Cas_Cas02710: CRISPR- 40.1 3.7E+02 0.008 26.4 12.5 55 330-385 140-198 (379)
442 PRK10564 maltose regulon perip 39.8 71 0.0015 29.6 5.4 36 178-213 253-289 (303)
443 PF11817 Foie-gras_1: Foie gra 39.8 1.7E+02 0.0036 26.6 8.0 54 256-309 183-241 (247)
444 PHA02875 ankyrin repeat protei 39.0 4E+02 0.0086 26.4 11.3 209 226-461 9-230 (413)
445 PF11663 Toxin_YhaV: Toxin wit 38.8 34 0.00073 27.2 2.8 21 475-495 109-129 (140)
446 PF04190 DUF410: Protein of un 38.3 3.2E+02 0.0069 25.1 18.8 26 285-310 89-114 (260)
447 KOG0128 RNA-binding protein SA 37.3 5.7E+02 0.012 27.7 33.6 199 139-349 112-340 (881)
448 PF08311 Mad3_BUB1_I: Mad3/BUB 36.6 2.1E+02 0.0046 22.6 9.3 43 374-416 81-124 (126)
449 KOG3807 Predicted membrane pro 36.0 3.8E+02 0.0082 25.3 13.0 59 257-315 281-340 (556)
450 smart00777 Mad3_BUB1_I Mad3/BU 36.0 2.2E+02 0.0048 22.5 11.5 59 107-165 63-124 (125)
451 COG5108 RPO41 Mitochondrial DN 35.9 2.7E+02 0.0058 29.1 8.9 90 256-348 33-130 (1117)
452 KOG1497 COP9 signalosome, subu 35.5 3.9E+02 0.0083 25.2 13.5 65 143-207 106-170 (399)
453 PF00244 14-3-3: 14-3-3 protei 35.4 3.3E+02 0.0073 24.5 10.1 40 292-331 7-46 (236)
454 KOG0551 Hsp90 co-chaperone CNS 35.4 2.3E+02 0.0049 26.9 7.7 94 392-487 82-179 (390)
455 KOG3807 Predicted membrane pro 35.3 3.9E+02 0.0085 25.2 14.0 58 185-244 279-339 (556)
456 PF10255 Paf67: RNA polymerase 34.6 3.1E+02 0.0068 27.0 9.1 59 360-418 126-191 (404)
457 PF09986 DUF2225: Uncharacteri 34.4 3.3E+02 0.0071 24.1 11.3 26 256-281 170-195 (214)
458 cd08819 CARD_MDA5_2 Caspase ac 34.3 1.9E+02 0.004 21.2 7.1 14 300-313 50-63 (88)
459 KOG0686 COP9 signalosome, subu 34.2 4.6E+02 0.01 25.7 14.8 64 182-245 151-216 (466)
460 COG5187 RPN7 26S proteasome re 34.0 3.9E+02 0.0084 24.8 13.7 173 92-265 55-241 (412)
461 PF03745 DUF309: Domain of unk 33.8 1.5E+02 0.0032 19.9 6.2 16 438-453 11-26 (62)
462 COG5159 RPN6 26S proteasome re 33.8 3.9E+02 0.0084 24.7 20.5 210 80-314 8-234 (421)
463 KOG4567 GTPase-activating prot 33.8 2.9E+02 0.0063 25.8 8.0 70 272-346 264-343 (370)
464 KOG4567 GTPase-activating prot 33.7 2.6E+02 0.0057 26.1 7.8 43 377-419 264-306 (370)
465 KOG2063 Vacuolar assembly/sort 33.7 7E+02 0.015 27.7 19.7 118 142-262 506-637 (877)
466 PF11663 Toxin_YhaV: Toxin wit 33.6 37 0.0008 27.0 2.3 31 438-470 107-137 (140)
467 TIGR02508 type_III_yscG type I 32.5 2.2E+02 0.0048 21.5 8.8 58 435-499 48-105 (115)
468 KOG2659 LisH motif-containing 32.5 3.6E+02 0.0078 24.0 10.1 17 366-382 74-90 (228)
469 COG4259 Uncharacterized protei 32.5 2E+02 0.0042 21.6 5.5 22 502-525 78-99 (121)
470 cd02680 MIT_calpain7_2 MIT: do 32.5 79 0.0017 22.3 3.5 32 55-103 3-34 (75)
471 COG5108 RPO41 Mitochondrial DN 32.2 3.6E+02 0.0078 28.3 9.1 75 186-263 33-115 (1117)
472 PF10475 DUF2450: Protein of u 32.0 4.3E+02 0.0094 24.7 12.4 24 284-307 195-218 (291)
473 PF15469 Sec5: Exocyst complex 31.8 2E+02 0.0043 24.5 6.8 23 467-489 92-114 (182)
474 KOG0686 COP9 signalosome, subu 31.7 5.1E+02 0.011 25.5 14.9 64 287-350 151-216 (466)
475 KOG2582 COP9 signalosome, subu 31.7 4.8E+02 0.01 25.2 15.1 18 332-349 194-211 (422)
476 PF13762 MNE1: Mitochondrial s 31.1 3E+02 0.0064 22.5 10.3 87 142-229 41-128 (145)
477 PF10366 Vps39_1: Vacuolar sor 31.0 2.4E+02 0.0053 21.6 6.6 26 394-419 42-67 (108)
478 KOG1839 Uncharacterized protei 29.8 2.8E+02 0.006 31.7 8.6 127 399-527 940-1086(1236)
479 PHA02875 ankyrin repeat protei 29.8 5.6E+02 0.012 25.3 12.2 140 190-345 8-156 (413)
480 TIGR02508 type_III_yscG type I 29.8 2.5E+02 0.0054 21.2 9.2 53 188-246 46-98 (115)
481 KOG2659 LisH motif-containing 29.1 4.2E+02 0.009 23.6 11.4 57 432-488 70-130 (228)
482 PF15297 CKAP2_C: Cytoskeleton 28.1 5.4E+02 0.012 24.7 9.9 64 442-507 119-186 (353)
483 PRK12798 chemotaxis protein; R 27.7 6.1E+02 0.013 25.1 22.6 50 153-208 125-175 (421)
484 PF04090 RNA_pol_I_TF: RNA pol 27.6 4.1E+02 0.009 23.1 7.8 35 392-427 42-76 (199)
485 KOG0545 Aryl-hydrocarbon recep 27.6 4.7E+02 0.01 23.7 11.6 60 144-210 234-293 (329)
486 COG4976 Predicted methyltransf 27.3 4.1E+02 0.009 23.8 7.6 52 402-454 6-57 (287)
487 PF09868 DUF2095: Uncharacteri 27.3 2.7E+02 0.006 21.4 5.7 39 467-506 67-105 (128)
488 KOG2297 Predicted translation 27.3 5.3E+02 0.011 24.2 18.9 19 393-411 323-341 (412)
489 KOG0292 Vesicle coat complex C 27.0 2.2E+02 0.0048 30.8 7.0 46 402-453 654-699 (1202)
490 PF05944 Phage_term_smal: Phag 26.9 3.3E+02 0.0072 21.8 9.1 31 428-458 50-80 (132)
491 PF05944 Phage_term_smal: Phag 26.8 3.4E+02 0.0073 21.8 7.5 46 61-107 35-80 (132)
492 PF09454 Vps23_core: Vps23 cor 26.8 2E+02 0.0044 19.6 4.6 46 355-401 7-52 (65)
493 KOG3364 Membrane protein invol 26.7 3.5E+02 0.0075 21.9 10.1 24 292-315 77-100 (149)
494 PRK11639 zinc uptake transcrip 25.9 3.5E+02 0.0075 22.8 7.1 45 222-266 31-75 (169)
495 PF14669 Asp_Glu_race_2: Putat 25.5 4.5E+02 0.0097 22.8 15.0 55 431-485 137-205 (233)
496 PF13762 MNE1: Mitochondrial s 24.8 3.9E+02 0.0084 21.9 10.3 23 255-277 43-65 (145)
497 COG2912 Uncharacterized conser 24.7 1.8E+02 0.0039 26.6 5.3 66 37-104 179-244 (269)
498 PF04391 DUF533: Protein of un 24.5 1.3E+02 0.0029 25.8 4.3 80 493-582 95-178 (188)
499 smart00101 14_3_3 14-3-3 homol 24.4 5.4E+02 0.012 23.4 11.7 46 513-560 145-198 (244)
500 COG4259 Uncharacterized protei 24.4 3.1E+02 0.0067 20.6 6.5 22 291-312 77-98 (121)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=8e-65 Score=532.63 Aligned_cols=502 Identities=17% Similarity=0.284 Sum_probs=427.9
Q ss_pred ccCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhc-----cHHHH
Q 047932 50 INLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINC-----RIMEA 124 (598)
Q Consensus 50 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~-----~~~~a 124 (598)
++.|++++|+++|+.|.+.+..+++...+..++..|.+.|..++|..+|+.|.. |+..+|+.++.. +++.|
T Consensus 381 ~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a~~k~g~~e~A 456 (1060)
T PLN03218 381 LRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVCASSQDIDGA 456 (1060)
T ss_pred HHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHHHHhCcCHHHH
Confidence 467888899999988887776556777778888888888888888888888873 888888888877 88888
Q ss_pred HHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHH
Q 047932 125 AALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELF 204 (598)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 204 (598)
.++|++|.+.|+.||..+|+.+|.+|++.|+++.|.++|++|.+.+ +.||..+|+.+|.+|++.|++++|.++|
T Consensus 457 ~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~G------v~PdvvTynaLI~gy~k~G~~eeAl~lf 530 (1060)
T PLN03218 457 LRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAG------VEANVHTFGALIDGCARAGQVAKAFGAY 530 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcC------CCCCHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 9999998888888888899999999999999999999999988887 7888899999999999999999999999
Q ss_pred HHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--CCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCC
Q 047932 205 LQMKDENINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMD--QGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGV 282 (598)
Q Consensus 205 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 282 (598)
+.|...|+.||..+|+.|+.+|++.|++++|.++|++|.. .|+.||..+|+.++.+|++.|++++|.++|+.|.+.|+
T Consensus 531 ~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi 610 (1060)
T PLN03218 531 GIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNI 610 (1060)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence 9998888888988999999999999999999999988876 56788888899999999999999999999999988888
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHH
Q 047932 283 HPNTFVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTL 362 (598)
Q Consensus 283 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 362 (598)
.|+..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++++.|.+.|+.|+..+|+.+
T Consensus 611 ~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsL 690 (1060)
T PLN03218 611 KGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSL 690 (1060)
T ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 88888999999999999999999999999988888888888999999999999999999999999888888888899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCH
Q 047932 363 FLGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKL 442 (598)
Q Consensus 363 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 442 (598)
+.+|++.|++++|.++|++|.+.++.|+..+|+.++.+|++.|++++|.++|++|...|+.||..+|+.++.+|++.|++
T Consensus 691 I~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~l 770 (1060)
T PLN03218 691 MGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDA 770 (1060)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCH
Confidence 99999999999999999988888888888899999999999999999999999888888888999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----c-------------------CCHHHHHHHHHHHHHCCCCCCHHHH
Q 047932 443 ETAWELFQSLSRVGLLPNVVTYNIMIHGLCN----D-------------------GQMDKAHDLFLDMEAKGVEPDCVIF 499 (598)
Q Consensus 443 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~-------------------g~~~~A~~~~~~~~~~~~~p~~~~~ 499 (598)
++|.+++++|.+.|+.||..+|+.++..|.+ + +..++|..+|++|.+.|+.||..||
T Consensus 771 e~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~ 850 (1060)
T PLN03218 771 DVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVL 850 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHH
Confidence 9999999999888888888888888765432 1 1236788888899888888998899
Q ss_pred HHHHHHHHhcCCccccchhHHHHHHHhcccCCCCCChHHHHHHHHHhCCC-CCChhhHHHhhhc--Cccc
Q 047932 500 NTIMLGFIRNNETSKSSRGKLMSQMSSCWSMCFQPKTLICSISIMLQKDM-SPGDTMFSTALLM--DPDC 566 (598)
Q Consensus 500 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~-~~a~~~~~~~l~~--~P~~ 566 (598)
..++.+++..+....+.. +++.|... +..|+..+|+.++...++. ++|..+++.+.+. -|+-
T Consensus 851 ~~vL~cl~~~~~~~~~~~--m~~~m~~~---~~~~~~~~y~~Li~g~~~~~~~A~~l~~em~~~Gi~p~~ 915 (1060)
T PLN03218 851 SQVLGCLQLPHDATLRNR--LIENLGIS---ADSQKQSNLSTLVDGFGEYDPRAFSLLEEAASLGVVPSV 915 (1060)
T ss_pred HHHHHHhcccccHHHHHH--HHHHhccC---CCCcchhhhHHHHHhhccChHHHHHHHHHHHHcCCCCCc
Confidence 888887777888777777 88777666 6777777888877766654 4688888777754 4544
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=5.2e-63 Score=518.99 Aligned_cols=504 Identities=21% Similarity=0.328 Sum_probs=456.6
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-CCHHhHHHHHhc-----cHHHHHHHHHHHHHcCCCCCHhhHH
Q 047932 71 SPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLF-PDLYTHSILINC-----RIMEAAALFTKLRVFGCEPDVFTYN 144 (598)
Q Consensus 71 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~ll~~-----~~~~a~~~~~~~~~~~~~~~~~~~~ 144 (598)
.+++...|..+...+.+.|++++|+++|++|...|+. ++..++..++.. ..++|..+|..|.. ||..+|+
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn 441 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFN 441 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHH
Confidence 3367888999999999999999999999999999864 556666656554 78999999998874 8999999
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 047932 145 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTYNSLIH 224 (598)
Q Consensus 145 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 224 (598)
.++.+|++.|+++.|.++|+.|.+.+ +.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.
T Consensus 442 ~LL~a~~k~g~~e~A~~lf~~M~~~G------l~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~ 515 (1060)
T PLN03218 442 MLMSVCASSQDIDGALRVLRLVQEAG------LKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALID 515 (1060)
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHcC------CCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 99999999999999999999999998 899999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHh--cCCCcCHHHHHHHHHHHHhcCCH
Q 047932 225 CFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQ--IGVHPNTFVYNTLMDGFCLTGRV 302 (598)
Q Consensus 225 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~~~~ll~~~~~~g~~ 302 (598)
+|++.|++++|.++|+.|.+.|+.||..+|+.++.+|++.|++++|.++|++|.. .|+.||..+|+.++.+|++.|++
T Consensus 516 gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~l 595 (1060)
T PLN03218 516 GCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQV 595 (1060)
T ss_pred HHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCH
Confidence 9999999999999999999999999999999999999999999999999999986 57899999999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047932 303 NHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFEVHQVEHALKLFDEM 382 (598)
Q Consensus 303 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 382 (598)
++|.++|+.|.+.|+.|+..+|+.++.+|++.|++++|.++|++|...|+.||..+|+.++.+|++.|++++|.++|++|
T Consensus 596 deA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM 675 (1060)
T PLN03218 596 DRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDA 675 (1060)
T ss_pred HHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH
Q 047932 383 QHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVV 462 (598)
Q Consensus 383 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 462 (598)
.+.|+.|+..+|+.++.+|++.|++++|..+|++|...++.||..+|+.|+.+|++.|++++|.++|++|.+.|+.||..
T Consensus 676 ~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~ 755 (1060)
T PLN03218 676 RKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTI 755 (1060)
T ss_pred HHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----c-------------------CCccccchhH
Q 047932 463 TYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFIR----N-------------------NETSKSSRGK 519 (598)
Q Consensus 463 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~-------------------g~~~~A~~~~ 519 (598)
+|+.++.+|++.|++++|.+++++|.+.|+.||..+|+.++..|.+ . +..++|..
T Consensus 756 Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~-- 833 (1060)
T PLN03218 756 TYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALM-- 833 (1060)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHH--
Confidence 9999999999999999999999999999999999999999866432 1 22367999
Q ss_pred HHHHHHhcccCCCCCChHHHHHHHH---HhCCCCCChhhHHHh-hhcCccccchhhHhhhhCCCCccchhhheec
Q 047932 520 LMSQMSSCWSMCFQPKTLICSISIM---LQKDMSPGDTMFSTA-LLMDPDCSCDLESLIHNTDLDQDELAYVITN 590 (598)
Q Consensus 520 ~~~~~~~~~~~~~~p~~~~~~~~~~---~~~~~~~a~~~~~~~-l~~~P~~~~~~~~l~~~~~~~~~~~~~~~~~ 590 (598)
+|++|.+. |+.||..++..++. ..++...+..+++.. +.-.+.+...|..|+...+. -++.|+...+
T Consensus 834 lf~eM~~~---Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~-~~~~A~~l~~ 904 (1060)
T PLN03218 834 VYRETISA---GTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGE-YDPRAFSLLE 904 (1060)
T ss_pred HHHHHHHC---CCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhcc-ChHHHHHHHH
Confidence 99999999 99999999988542 223334444444332 12355666789999887653 2344554443
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=9.1e-64 Score=536.11 Aligned_cols=497 Identities=21% Similarity=0.343 Sum_probs=354.4
Q ss_pred cccCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhc-----cHHH
Q 047932 49 DINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINC-----RIME 123 (598)
Q Consensus 49 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~-----~~~~ 123 (598)
+.+.|+++.|.++|+.+. . ++..+|+.++.+|.+.|++++|+++|++|...|+.||..||+.++.. ++..
T Consensus 131 ~~~~g~~~~A~~~f~~m~----~-~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~ 205 (857)
T PLN03077 131 FVRFGELVHAWYVFGKMP----E-RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLAR 205 (857)
T ss_pred HHhCCChHHHHHHHhcCC----C-CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhh
Confidence 358899999999999883 3 68899999999999999999999999999999999999999998876 5666
Q ss_pred HHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHH
Q 047932 124 AAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMEL 203 (598)
Q Consensus 124 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 203 (598)
+.+++..+.+.|..||..+++.|+.+|++.|+++.|..+|++|.. +|..+|+++|.+|++.|++++|+++
T Consensus 206 ~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----------~d~~s~n~li~~~~~~g~~~eAl~l 275 (857)
T PLN03077 206 GREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR----------RDCISWNAMISGYFENGECLEGLEL 275 (857)
T ss_pred HHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----------CCcchhHHHHHHHHhCCCHHHHHHH
Confidence 677777777777777777777777777777777666666666642 4456666666666666666666666
Q ss_pred HHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHH-------
Q 047932 204 FLQMKDENINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDL------- 276 (598)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~------- 276 (598)
|++|...|+.||..+|+.++.+|++.|+.+.+.+++..|.+.|+.||..+|+.++.+|++.|++++|.++|++
T Consensus 276 f~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~ 355 (857)
T PLN03077 276 FFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAV 355 (857)
T ss_pred HHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCee
Confidence 6666666666666666666666665555555555555555555555555555555555555555555555554
Q ss_pred ------------------------HHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 047932 277 ------------------------MIQIGVHPNTFVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYC 332 (598)
Q Consensus 277 ------------------------~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 332 (598)
|.+.|+.||..+|+.++.+|++.|+++.|.++++.+.+.|+.++..+|+.|+.+|+
T Consensus 356 s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~ 435 (857)
T PLN03077 356 SWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYS 435 (857)
T ss_pred eHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHH
Confidence 44444444555555555555555555555555555554554555555555555555
Q ss_pred hcCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHH---------------
Q 047932 333 KTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTF--------------- 397 (598)
Q Consensus 333 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--------------- 397 (598)
+.|++++|.++|++|.+. |..+|+.++.+|.+.|+.++|..+|++|.. ++.||..+|+.+
T Consensus 436 k~g~~~~A~~vf~~m~~~----d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~ 510 (857)
T PLN03077 436 KCKCIDKALEVFHNIPEK----DVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKE 510 (857)
T ss_pred HcCCHHHHHHHHHhCCCC----CeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHH
Confidence 555555555555555432 333344444444444444444444444432 234444444433
Q ss_pred --------------------HHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 047932 398 --------------------IDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGL 457 (598)
Q Consensus 398 --------------------~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 457 (598)
+.+|+++|++++|..+|+.+ .+|..+|+.++.+|++.|+.++|.++|++|.+.|+
T Consensus 511 i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~ 585 (857)
T PLN03077 511 IHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGV 585 (857)
T ss_pred HHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 34444455555555555443 46788899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHhcCCccccchhHHHHHHHhcccCCCCCCh
Q 047932 458 LPNVVTYNIMIHGLCNDGQMDKAHDLFLDME-AKGVEPDCVIFNTIMLGFIRNNETSKSSRGKLMSQMSSCWSMCFQPKT 536 (598)
Q Consensus 458 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~ 536 (598)
.||..||+.++.+|.+.|++++|.++|+.|. +.|+.|+..+|+.++.+|.+.|+.++|.+ ++++| ++.||.
T Consensus 586 ~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~--~~~~m------~~~pd~ 657 (857)
T PLN03077 586 NPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYN--FINKM------PITPDP 657 (857)
T ss_pred CCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHH--HHHHC------CCCCCH
Confidence 9999999999999999999999999999999 67999999999999999999999999999 99998 478999
Q ss_pred HHHHH---HHHHhCCCCCChhhHHHhhhcCccccchhhHhhhhCC
Q 047932 537 LICSI---SIMLQKDMSPGDTMFSTALLMDPDCSCDLESLIHNTD 578 (598)
Q Consensus 537 ~~~~~---~~~~~~~~~~a~~~~~~~l~~~P~~~~~~~~l~~~~~ 578 (598)
.+|.. .|..+++.+.|+.+.+++++++|+++..|..|.+.+.
T Consensus 658 ~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya 702 (857)
T PLN03077 658 AVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYA 702 (857)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHH
Confidence 99988 6678999999999999999999999999988855443
No 4
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.6e-60 Score=509.50 Aligned_cols=516 Identities=21% Similarity=0.309 Sum_probs=431.1
Q ss_pred CChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhc-----cHHHHHHH
Q 047932 53 ITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINC-----RIMEAAAL 127 (598)
Q Consensus 53 g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~-----~~~~a~~~ 127 (598)
+.++.|..++..+.+.++. ++...++.++..|.+.|+++.|.++|++|. .||..+|+.++.. ++++|+.+
T Consensus 100 ~~~~~a~~~~~~~~~~~~~-~~~~~~n~li~~~~~~g~~~~A~~~f~~m~----~~d~~~~n~li~~~~~~g~~~~A~~~ 174 (857)
T PLN03077 100 RAVEEGSRVCSRALSSHPS-LGVRLGNAMLSMFVRFGELVHAWYVFGKMP----ERDLFSWNVLVGGYAKAGYFDEALCL 174 (857)
T ss_pred CCHHHHHHHHHHHHHcCCC-CCchHHHHHHHHHHhCCChHHHHHHHhcCC----CCCeeEHHHHHHHHHhCCCHHHHHHH
Confidence 3344444444444444433 455566677777777777777777777776 4677777777766 77788888
Q ss_pred HHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047932 128 FTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQM 207 (598)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 207 (598)
|++|...|+.||..+|+.++.+|+..+++..+.+++..+.+.+ +.||..+|+.|+.+|++.|++++|.++|++|
T Consensus 175 f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g------~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m 248 (857)
T PLN03077 175 YHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFG------FELDVDVVNALITMYVKCGDVVSARLVFDRM 248 (857)
T ss_pred HHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcC------CCcccchHhHHHHHHhcCCCHHHHHHHHhcC
Confidence 8888777778888888888888888888888888888887777 7888889999999999999999999999999
Q ss_pred hhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcCHH
Q 047932 208 KDENINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTF 287 (598)
Q Consensus 208 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 287 (598)
.. ||..+|++++.+|++.|++++|.++|.+|...|+.||..||+.++.+|++.|+.+.+.+++..+.+.|+.||..
T Consensus 249 ~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~ 324 (857)
T PLN03077 249 PR----RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVS 324 (857)
T ss_pred CC----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchH
Confidence 74 58899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHHH
Q 047932 288 VYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLF 367 (598)
Q Consensus 288 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 367 (598)
+|+.++.+|++.|++++|.++|++|.. +|..+|+.++.+|++.|++++|+++|++|...|+.||..+|+.++.+|+
T Consensus 325 ~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~ 400 (857)
T PLN03077 325 VCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACA 400 (857)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHh
Confidence 999999999999999999999999973 6889999999999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 047932 368 EVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWE 447 (598)
Q Consensus 368 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 447 (598)
+.|+++.|.++++.+.+.|+.++..+++.++.+|++.|++++|.++|++|.+ +|..+|+.++.+|.+.|+.++|+.
T Consensus 401 ~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~ 476 (857)
T PLN03077 401 CLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALI 476 (857)
T ss_pred ccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHH
Confidence 9999999999999999999999999999999999999999999999988863 456666777766666666666666
Q ss_pred HHHHHHhCCC-----------------------------------------------------------------CCCHH
Q 047932 448 LFQSLSRVGL-----------------------------------------------------------------LPNVV 462 (598)
Q Consensus 448 ~~~~~~~~~~-----------------------------------------------------------------~p~~~ 462 (598)
+|++|.. ++ .||..
T Consensus 477 lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~ 555 (857)
T PLN03077 477 FFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVV 555 (857)
T ss_pred HHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChh
Confidence 6666653 23 34566
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccccchhHHHHHHHhcccCCCCCChHHHHH-
Q 047932 463 TYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFIRNNETSKSSRGKLMSQMSSCWSMCFQPKTLICSI- 541 (598)
Q Consensus 463 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~- 541 (598)
+|+.++.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|.+.|++++|.+ +|+.|.+. +++.|+..+|..
T Consensus 556 s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~--~f~~M~~~--~gi~P~~~~y~~l 631 (857)
T PLN03077 556 SWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLE--YFHSMEEK--YSITPNLKHYACV 631 (857)
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHH--HHHHHHHH--hCCCCchHHHHHH
Confidence 7888888999999999999999999999999999999999999999999999999 99999944 399999999988
Q ss_pred --HHHHhCCCCCChhhHHHhhhcCccccchhhHhhhhCCCC-ccchhhheecccccccCC
Q 047932 542 --SIMLQKDMSPGDTMFSTALLMDPDCSCDLESLIHNTDLD-QDELAYVITNSTWLLMPN 598 (598)
Q Consensus 542 --~~~~~~~~~~a~~~~~~~l~~~P~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~ 598 (598)
++-..|++++|.+.++.. .+.|+ +..|..|+...... ..+.+...+++.++|.|+
T Consensus 632 v~~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~ 689 (857)
T PLN03077 632 VDLLGRAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRHVELGELAAQHIFELDPN 689 (857)
T ss_pred HHHHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Confidence 455578899999998875 35665 45566665443322 224555566677777774
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.3e-58 Score=482.68 Aligned_cols=460 Identities=18% Similarity=0.304 Sum_probs=436.8
Q ss_pred cccCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhc-----cHHH
Q 047932 49 DINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINC-----RIME 123 (598)
Q Consensus 49 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~-----~~~~ 123 (598)
+.+.|++++|+++|+++....+..++..+|+.++.++.+.++++.+..++..|.+.|+.||..+++.++.. ++++
T Consensus 97 l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~ 176 (697)
T PLN03081 97 LVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLID 176 (697)
T ss_pred HHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHH
Confidence 45789999999999999887666689999999999999999999999999999999999999999999987 9999
Q ss_pred HHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHH
Q 047932 124 AAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMEL 203 (598)
Q Consensus 124 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 203 (598)
|.++|++|. .||..+|+.++.+|++.|++++|.++|++|.+.+ +.|+..+|+.++.+|++.|..+.+.++
T Consensus 177 A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g------~~p~~~t~~~ll~a~~~~~~~~~~~~l 246 (697)
T PLN03081 177 ARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDG------SDAEPRTFVVMLRASAGLGSARAGQQL 246 (697)
T ss_pred HHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhC------CCCChhhHHHHHHHHhcCCcHHHHHHH
Confidence 999999997 4799999999999999999999999999999988 799999999999999999999999999
Q ss_pred HHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Q 047932 204 FLQMKDENINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVH 283 (598)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 283 (598)
+..+.+.|+.||..+|+.|+.+|++.|++++|.++|+.|. .+|..+|+.++.+|++.|++++|.++|++|.+.|+.
T Consensus 247 ~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~ 322 (697)
T PLN03081 247 HCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVS 322 (697)
T ss_pred HHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999999999999999999999985 468999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHH
Q 047932 284 PNTFVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLF 363 (598)
Q Consensus 284 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 363 (598)
||..+|+.++.+|++.|++++|.+++..|.+.|++++..+++.|+.+|++.|++++|.++|++|.+ ||..+|+.+|
T Consensus 323 pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI 398 (697)
T PLN03081 323 IDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALI 398 (697)
T ss_pred CCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999975 6899999999
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh-CCCCCCHHHHHHHHHHHHHcCCH
Q 047932 364 LGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGN-SKYELDIISYSCLIDGLCKIGKL 442 (598)
Q Consensus 364 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~ 442 (598)
.+|++.|+.++|.++|++|.+.|+.||..+|+.++.+|.+.|..++|.++|+.|.+ .++.|+..+|+.++.+|++.|++
T Consensus 399 ~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~ 478 (697)
T PLN03081 399 AGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLL 478 (697)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCH
Confidence 99999999999999999999999999999999999999999999999999999985 68999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccccchhHHHH
Q 047932 443 ETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFIRNNETSKSSRGKLMS 522 (598)
Q Consensus 443 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 522 (598)
++|.+++++| ++.|+..+|++|+.+|...|+++.|..+++++.+.+ +.+..+|..++.+|.+.|++++|.+ +++
T Consensus 479 ~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~-p~~~~~y~~L~~~y~~~G~~~~A~~--v~~ 552 (697)
T PLN03081 479 DEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMG-PEKLNNYVVLLNLYNSSGRQAEAAK--VVE 552 (697)
T ss_pred HHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCC-CCCCcchHHHHHHHHhCCCHHHHHH--HHH
Confidence 9999999876 468999999999999999999999999999998643 3357799999999999999999999 999
Q ss_pred HHHhcccCCCCCC
Q 047932 523 QMSSCWSMCFQPK 535 (598)
Q Consensus 523 ~~~~~~~~~~~p~ 535 (598)
.|.+. |+...
T Consensus 553 ~m~~~---g~~k~ 562 (697)
T PLN03081 553 TLKRK---GLSMH 562 (697)
T ss_pred HHHHc---CCccC
Confidence 99988 77544
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=5.5e-58 Score=479.88 Aligned_cols=462 Identities=19% Similarity=0.282 Sum_probs=352.7
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCCCHHhHHHHHhc-----cHHHHHHHHHHHHHcCCCCCHhhHHHH
Q 047932 73 PPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTG-LFPDLYTHSILINC-----RIMEAAALFTKLRVFGCEPDVFTYNTL 146 (598)
Q Consensus 73 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~ll~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l 146 (598)
.+...|+.++..+.+.|++++|+++|+.|...+ ..||..+|+.++.+ +.+.+..++..|.+.|+.||..+|+.+
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 456689999999999999999999999998764 56777777777766 667777777777777777777777777
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 047932 147 INGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTYNSLIHCF 226 (598)
Q Consensus 147 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 226 (598)
+..|++.|+++.|.++|++|. .||..+|++++.+|++.|++++|.++|++|.+.|+.|+..+|+.++.++
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~----------~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~ 234 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMP----------ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRAS 234 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCC----------CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHH
Confidence 777777777777777777774 3567777777777777777777777777777777777777777777777
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHH
Q 047932 227 SHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTLMDGFCLTGRVNHAK 306 (598)
Q Consensus 227 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 306 (598)
+..|..+.+.+++..+.+.|+.||..+++.++.+|++.|++++|.++|+.|.. +|..+|+.++.+|++.|+.++|.
T Consensus 235 ~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~ 310 (697)
T PLN03081 235 AGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEAL 310 (697)
T ss_pred hcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHH
Confidence 77777777777777777777777777777777777777777777777777743 47777777777777777777777
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 047932 307 ELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFEVHQVEHALKLFDEMQHND 386 (598)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 386 (598)
++|++|.+.|+.||..+|+.++.+|++.|++++|.+++..|.+.|+.||..+++.++.+|++.|++++|.++|++|.+
T Consensus 311 ~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~-- 388 (697)
T PLN03081 311 CLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR-- 388 (697)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC--
Confidence 777777777777777777777777777777777777777777777777777777777777777777777777777753
Q ss_pred CCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-CCCCCCHHHHH
Q 047932 387 VAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSR-VGLLPNVVTYN 465 (598)
Q Consensus 387 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p~~~~~~ 465 (598)
+|..+|+.++.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|++++|.++|+.|.+ .|+.|+..+|+
T Consensus 389 --~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~ 466 (697)
T PLN03081 389 --KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYA 466 (697)
T ss_pred --CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchH
Confidence 466777777777777777777777777777777777777777777777777777777777777765 57777777777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccccchhHHHHHHHhcccCCCCCCh-HHHHH---
Q 047932 466 IMIHGLCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFIRNNETSKSSRGKLMSQMSSCWSMCFQPKT-LICSI--- 541 (598)
Q Consensus 466 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~-~~~~~--- 541 (598)
.++.+|++.|++++|.+++++| ++.|+..+|+.++.+|...|+.+.|.. +++++. ++.|+. .+|..
T Consensus 467 ~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~--~~~~l~-----~~~p~~~~~y~~L~~ 536 (697)
T PLN03081 467 CMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRL--AAEKLY-----GMGPEKLNNYVVLLN 536 (697)
T ss_pred hHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHH--HHHHHh-----CCCCCCCcchHHHHH
Confidence 7777777777777777777654 457777777777777777777777777 777776 345542 23333
Q ss_pred HHHHhCCCCCChhhHHHhhhc
Q 047932 542 SIMLQKDMSPGDTMFSTALLM 562 (598)
Q Consensus 542 ~~~~~~~~~~a~~~~~~~l~~ 562 (598)
.+-..|+.++|.++++...+.
T Consensus 537 ~y~~~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 537 LYNSSGRQAEAAKVVETLKRK 557 (697)
T ss_pred HHHhCCCHHHHHHHHHHHHHc
Confidence 344567777777777665544
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=2.3e-33 Score=309.23 Aligned_cols=517 Identities=12% Similarity=0.074 Sum_probs=273.2
Q ss_pred cCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhc------cHHHH
Q 047932 51 NLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINC------RIMEA 124 (598)
Q Consensus 51 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~------~~~~a 124 (598)
..|++++|...++.++...|. ++..+..++..+.+.|++++|..+|+++... .|+.......+.. +.++|
T Consensus 341 ~~g~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A 416 (899)
T TIGR02917 341 RLGRVDEAIATLSPALGLDPD--DPAALSLLGEAYLALGDFEKAAEYLAKATEL--DPENAAARTQLGISKLSQGDPSEA 416 (899)
T ss_pred HCCCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHhCCChHHH
Confidence 344444444444444443332 4444444444444555555555555444433 2222111111110 44444
Q ss_pred HHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHH
Q 047932 125 AALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELF 204 (598)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 204 (598)
.+.++.+.+.+.. .......++..+.+.|++++|..+++.+.... +.+..++..+...+...|++++|.+.|
T Consensus 417 ~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~ 488 (899)
T TIGR02917 417 IADLETAAQLDPE-LGRADLLLILSYLRSGQFDKALAAAKKLEKKQ-------PDNASLHNLLGAIYLGKGDLAKAREAF 488 (899)
T ss_pred HHHHHHHHhhCCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC-------CCCcHHHHHHHHHHHhCCCHHHHHHHH
Confidence 4544444443211 12233334444555555555555555554432 344555555666666666666666666
Q ss_pred HHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCc
Q 047932 205 LQMKDENINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHP 284 (598)
Q Consensus 205 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 284 (598)
+++.+.. +.+...+..+...+...|++++|.+.++++...+ +.+..++..+...+.+.|+.++|...++++...+ +.
T Consensus 489 ~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~ 565 (899)
T TIGR02917 489 EKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQ 565 (899)
T ss_pred HHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cc
Confidence 6655432 2244455555555666666666666666655542 2344455555556666666666666666655543 22
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHH
Q 047932 285 NTFVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFL 364 (598)
Q Consensus 285 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 364 (598)
+...+..++..+...|++++|..+++.+.+.. +.+...|..++.++...|++++|...++++..... .+...+..+..
T Consensus 566 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~ 643 (899)
T TIGR02917 566 EIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQP-DSALALLLLAD 643 (899)
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHH
Confidence 44455555566666666666666666655442 33555566666666666666666666666654422 24445555566
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 047932 365 GLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLET 444 (598)
Q Consensus 365 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 444 (598)
.+...|++++|..+++++.+.. +.+...+..++..+...|++++|..+++.+.+.. +.+...+..+...+...|++++
T Consensus 644 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~ 721 (899)
T TIGR02917 644 AYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPA 721 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHH
Confidence 6666666666666666665543 3345555666666666666666666666665443 3355555566666666666666
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccccchhHHHHHH
Q 047932 445 AWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFIRNNETSKSSRGKLMSQM 524 (598)
Q Consensus 445 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 524 (598)
|...++++... .|+..++..++.++.+.|++++|.+.++++.+.. +.+...+..++..|...|++++|.+ .++++
T Consensus 722 A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~--~~~~~ 796 (899)
T TIGR02917 722 AIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIK--HYRTV 796 (899)
T ss_pred HHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHH--HHHHH
Confidence 66666666553 2333455555666666666666666666666543 4455566666666666666666666 66666
Q ss_pred HhcccCCCCCCh-HHHHH---HHHHhCCCCCChhhHHHhhhcCccccchhhHhhhhCCCC-ccchhhheecccccccC
Q 047932 525 SSCWSMCFQPKT-LICSI---SIMLQKDMSPGDTMFSTALLMDPDCSCDLESLIHNTDLD-QDELAYVITNSTWLLMP 597 (598)
Q Consensus 525 ~~~~~~~~~p~~-~~~~~---~~~~~~~~~~a~~~~~~~l~~~P~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~ 597 (598)
.+. .|+. ..+.. ++...|+ .+|+..+++++++.|+++..+..+....... .-+.|..+.++++++.|
T Consensus 797 ~~~-----~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 797 VKK-----APDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred HHh-----CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 644 2332 22222 2333444 5566666666666666666555553332221 22445555666655555
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=2.4e-33 Score=309.00 Aligned_cols=522 Identities=13% Similarity=0.085 Sum_probs=404.0
Q ss_pred cccCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhc-----cHHH
Q 047932 49 DINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINC-----RIME 123 (598)
Q Consensus 49 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~-----~~~~ 123 (598)
+.+.|++++|...|+.++...|. +...+..++..+.+.|++++|...++++.... ..+...+..+... ++++
T Consensus 305 ~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~ 381 (899)
T TIGR02917 305 EYQLGNLEQAYQYLNQILKYAPN--SHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEK 381 (899)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHH
Confidence 34566667777777666666554 55666666666777777777777777666543 1122222222211 6777
Q ss_pred HHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHH
Q 047932 124 AAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMEL 203 (598)
Q Consensus 124 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 203 (598)
|.+.|+++.+.+ +.+...+..+...+...|++++|.+.|+.+.+.. +........++..+.+.|++++|.++
T Consensus 382 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~ 453 (899)
T TIGR02917 382 AAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLD-------PELGRADLLLILSYLRSGQFDKALAA 453 (899)
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhC-------CcchhhHHHHHHHHHhcCCHHHHHHH
Confidence 777777776653 2245566667777777777777777777776654 23345556667777788888888888
Q ss_pred HHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Q 047932 204 FLQMKDENINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVH 283 (598)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 283 (598)
++.+... .+.+..++..+...+...|++++|.+.|+++.+.. +.+...+..++..+...|++++|.+.++.+.+.+ +
T Consensus 454 ~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~ 530 (899)
T TIGR02917 454 AKKLEKK-QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-P 530 (899)
T ss_pred HHHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-c
Confidence 8887764 34467788888888888999999999998888753 3355667778888888999999999998888764 3
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHH
Q 047932 284 PNTFVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLF 363 (598)
Q Consensus 284 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 363 (598)
.+..++..+...+.+.|+.++|...++++...+ +.+...+..++..+...|++++|..+++.+.... +.+...|..++
T Consensus 531 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 608 (899)
T TIGR02917 531 KNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLG 608 (899)
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHH
Confidence 467788888888888999999999999887764 4566778888899999999999999999988653 34678888999
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHH
Q 047932 364 LGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLE 443 (598)
Q Consensus 364 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 443 (598)
.++...|++++|...|+.+.+.. +.+...+..++.++...|++++|..+|+++.+.. +.+..++..++..+...|+++
T Consensus 609 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 686 (899)
T TIGR02917 609 RAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTE 686 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHH
Confidence 99999999999999999998764 5567788889999999999999999999998764 446788899999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccccchhHHHHH
Q 047932 444 TAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFIRNNETSKSSRGKLMSQ 523 (598)
Q Consensus 444 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 523 (598)
+|..+++.+.+.+ +.+...+..++..+...|++++|.+.|+++...+ |+..++..++.++.+.|++++|.+ .+++
T Consensus 687 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~--~~~~ 761 (899)
T TIGR02917 687 SAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVK--TLEA 761 (899)
T ss_pred HHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHH--HHHH
Confidence 9999999998864 4467778888899999999999999999999864 555788889999999999999999 9999
Q ss_pred HHhcccCCCCCChHHHHH----HHHHhCCCCCChhhHHHhhhcCccccchhhHhhhhCCCCccchhhheecccccccCC
Q 047932 524 MSSCWSMCFQPKTLICSI----SIMLQKDMSPGDTMFSTALLMDPDCSCDLESLIHNTDLDQDELAYVITNSTWLLMPN 598 (598)
Q Consensus 524 ~~~~~~~~~~p~~~~~~~----~~~~~~~~~~a~~~~~~~l~~~P~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 598 (598)
+.+. .|+...... ++...|+.++|...++++++..|+++.++..+.+......+..|..++++++.+.|+
T Consensus 762 ~l~~-----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~ 835 (899)
T TIGR02917 762 WLKT-----HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKDPRALEYAEKALKLAPN 835 (899)
T ss_pred HHHh-----CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCC
Confidence 9866 455433322 556689999999999999999999999999987776655556699999999998885
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.97 E-value=6.4e-25 Score=241.93 Aligned_cols=498 Identities=14% Similarity=0.071 Sum_probs=328.4
Q ss_pred ccccCCChHHHHHHHHHHHHcCCCCCCHHHH----------------HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH
Q 047932 48 GDINLITPNEALCIFDYMLRMHPSPPPVSSF----------------NILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLY 111 (598)
Q Consensus 48 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~----------------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 111 (598)
..++.|++++|.+.++++.+..|. ++..+ ..++..+.+.|++++|+..|+++.+.. .|+..
T Consensus 71 ~~l~~g~~~~A~~~l~~l~~~~P~--~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~ 147 (1157)
T PRK11447 71 LLLRQGDSDGAQKLLDRLSQLAPD--SNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGA-PPELD 147 (1157)
T ss_pred HHHhCCCHHHHHHHHHHHHhhCCC--ChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChH
Confidence 346899999999999999999987 44432 344557889999999999999998763 23322
Q ss_pred h---H-HHHHh--ccHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC------------
Q 047932 112 T---H-SILIN--CRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEF------------ 173 (598)
Q Consensus 112 ~---~-~~ll~--~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------------ 173 (598)
. + ..+.. .+.++|++.++++.+.. +.+...+..+...+...|+.++|+..++++.......
T Consensus 148 la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~ 226 (1157)
T PRK11447 148 LAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIK 226 (1157)
T ss_pred HHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHh
Confidence 1 1 22221 28999999999999875 3366778899999999999999999999986542100
Q ss_pred cccc--------------CCCHhH---------------------HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHH
Q 047932 174 GVVC--------------KPDTVT---------------------YNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVT 218 (598)
Q Consensus 174 ~~~~--------------~~~~~~---------------------~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 218 (598)
.... .|+... .......+...|++++|+..|++..+... .+...
T Consensus 227 ~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P-~~~~a 305 (1157)
T PRK11447 227 DMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRANP-KDSEA 305 (1157)
T ss_pred ccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHH
Confidence 0000 011000 01224456778999999999999988643 37888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HhhH------------HHHHHHHHhCCCHHHHHHHHHHHHhcCCCcC
Q 047932 219 YNSLIHCFSHADDWNEAKRLFIKMMDQGVHPN-VVTF------------SVIVDELCKNGKMEEASRLLDLMIQIGVHPN 285 (598)
Q Consensus 219 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~------------~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 285 (598)
+..+..++.+.|++++|+..|++.++...... ...+ ......+.+.|++++|+..++++++.. +.+
T Consensus 306 ~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~ 384 (1157)
T PRK11447 306 LGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTD 384 (1157)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCC
Confidence 99999999999999999999999887632211 1111 122456778999999999999999874 336
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCC--------CCHH
Q 047932 286 TFVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIR--------PTVV 357 (598)
Q Consensus 286 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--------~~~~ 357 (598)
...+..+..++...|++++|++.|+++.+.. +.+...+..+...|. .++.++|...++.+...... ....
T Consensus 385 ~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~ 462 (1157)
T PRK11447 385 SYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQND 462 (1157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhh
Confidence 6677888899999999999999999988764 334445554544442 23444444444433221000 0011
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHH-------
Q 047932 358 TYSTLFLGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYS------- 430 (598)
Q Consensus 358 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~------- 430 (598)
.+..+...+...|++++|+..|+++++.. +.+...+..+...+.+.|++++|...++++.+.. +.+...+.
T Consensus 463 ~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~ 540 (1157)
T PRK11447 463 RLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLS 540 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 12223334444555555555555554432 2234444444455555555555555555544322 11222222
Q ss_pred -------------------------------------HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 047932 431 -------------------------------------CLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCN 473 (598)
Q Consensus 431 -------------------------------------~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 473 (598)
.+...+...|++++|..+++. .+.+...+..+...+.+
T Consensus 541 ~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~ 615 (1157)
T PRK11447 541 GSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQ 615 (1157)
T ss_pred hCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHH
Confidence 233445556666666666551 23345566778888888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccccchhHHHHHHHhcccCCCCCChHHHHH----HHHHhCCC
Q 047932 474 DGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFIRNNETSKSSRGKLMSQMSSCWSMCFQPKTLICSI----SIMLQKDM 549 (598)
Q Consensus 474 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~----~~~~~~~~ 549 (598)
.|++++|+..|+++++.. +.+...+..++.+|...|++++|.+ .++.+.+. .|+...... +....|+.
T Consensus 616 ~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~--~l~~ll~~-----~p~~~~~~~~la~~~~~~g~~ 687 (1157)
T PRK11447 616 RGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARA--QLAKLPAT-----ANDSLNTQRRVALAWAALGDT 687 (1157)
T ss_pred cCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHH--HHHHHhcc-----CCCChHHHHHHHHHHHhCCCH
Confidence 999999999999988864 5577888888899999999999999 99988744 455443222 45567889
Q ss_pred CCChhhHHHhhhcCccccc
Q 047932 550 SPGDTMFSTALLMDPDCSC 568 (598)
Q Consensus 550 ~~a~~~~~~~l~~~P~~~~ 568 (598)
++|.+.++++++..|+++.
T Consensus 688 ~eA~~~~~~al~~~~~~~~ 706 (1157)
T PRK11447 688 AAAQRTFNRLIPQAKSQPP 706 (1157)
T ss_pred HHHHHHHHHHhhhCccCCc
Confidence 9999999999988877654
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.97 E-value=4.2e-25 Score=243.33 Aligned_cols=523 Identities=13% Similarity=0.031 Sum_probs=360.0
Q ss_pred ccCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHH---------------
Q 047932 50 INLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS--------------- 114 (598)
Q Consensus 50 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~--------------- 114 (598)
...++.+.|.+.+++++...|. ++..+..++..+.+.|+.++|.+.++++.+.. |+...+.
T Consensus 39 ~~~~~~d~a~~~l~kl~~~~p~--~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~--P~~~~~~~~~~~~~~~~~~~~~ 114 (1157)
T PRK11447 39 EATHREDLVRQSLYRLELIDPN--NPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA--PDSNAYRSSRTTMLLSTPEGRQ 114 (1157)
T ss_pred HhhCChHHHHHHHHHHHccCCC--CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHhcCCchhh
Confidence 4678999999999999999987 89999999999999999999999999999874 5543321
Q ss_pred ------HHHh-ccHHHHHHHHHHHHHcCCCCCHh-hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHH
Q 047932 115 ------ILIN-CRIMEAAALFTKLRVFGCEPDVF-TYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNT 186 (598)
Q Consensus 115 ------~ll~-~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (598)
.+.. .++++|+..|+++.+.+. ++.. ....+.......|+.++|++.++++.+.. |.+...+..
T Consensus 115 ~l~~A~ll~~~g~~~eA~~~~~~~l~~~p-~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-------P~~~~~~~~ 186 (1157)
T PRK11447 115 ALQQARLLATTGRTEEALASYDKLFNGAP-PELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-------PGNTGLRNT 186 (1157)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHccCCC-CChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-------CCCHHHHHH
Confidence 1111 199999999999987642 2322 11122222334699999999999999986 567888899
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCC------------------CCC-HHHHH---------------------------
Q 047932 187 IIDGVCKEGFVDKAMELFLQMKDENI------------------NPN-VVTYN--------------------------- 220 (598)
Q Consensus 187 li~~~~~~g~~~~A~~~~~~~~~~~~------------------~~~-~~~~~--------------------------- 220 (598)
+...+...|++++|++.++++..... .+. ...+.
T Consensus 187 LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~ 266 (1157)
T PRK11447 187 LALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLA 266 (1157)
T ss_pred HHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhcc
Confidence 99999999999999999998864311 000 00000
Q ss_pred -------HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCc-CHHHH---
Q 047932 221 -------SLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHP-NTFVY--- 289 (598)
Q Consensus 221 -------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~--- 289 (598)
.....+...|++++|+..|++.++.. +.+...+..+..++.+.|++++|+..|++.++..... ....+
T Consensus 267 dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~l 345 (1157)
T PRK11447 267 DPAFRARAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESL 345 (1157)
T ss_pred CcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHH
Confidence 11344566788888888888888753 3366777888888888888888888888887754221 11111
Q ss_pred ---------HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHH
Q 047932 290 ---------NTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYS 360 (598)
Q Consensus 290 ---------~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 360 (598)
......+.+.|++++|+..|+++.+.. +.+...+..+...+...|++++|++.|+++...... +...+.
T Consensus 346 l~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~ 423 (1157)
T PRK11447 346 LKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVR 423 (1157)
T ss_pred HHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHH
Confidence 122345677888888888888888764 445667777888888888888888888888876332 455555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCC--------cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 047932 361 TLFLGLFEVHQVEHALKLFDEMQHNDVA--------ADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCL 432 (598)
Q Consensus 361 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 432 (598)
.+...+. .++.++|..+++.+...... .....+..+...+...|++++|+..|+++++.. +.+...+..+
T Consensus 424 ~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~L 501 (1157)
T PRK11447 424 GLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRL 501 (1157)
T ss_pred HHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 6666554 45678888777655332100 012234556777888999999999999999775 3467788899
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----------------------
Q 047932 433 IDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEAK---------------------- 490 (598)
Q Consensus 433 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------------------- 490 (598)
...|...|++++|...++++.+... .+...+..+...+...|+.++|+..++.+...
T Consensus 502 A~~~~~~G~~~~A~~~l~~al~~~P-~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a 580 (1157)
T PRK11447 502 AQDLRQAGQRSQADALMRRLAQQKP-NDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETA 580 (1157)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHH
Confidence 9999999999999999999987422 23333333333334444544444444332110
Q ss_pred -----------------CCCCCHHHHHHHHHHHHhcCCccccchhHHHHHHHhcccCCCCCChHHHHH----HHHHhCCC
Q 047932 491 -----------------GVEPDCVIFNTIMLGFIRNNETSKSSRGKLMSQMSSCWSMCFQPKTLICSI----SIMLQKDM 549 (598)
Q Consensus 491 -----------------~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~----~~~~~~~~ 549 (598)
..+.+...+..+...+.+.|++++|+. .++++.+. .|+...... ++...|+.
T Consensus 581 ~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~--~y~~al~~-----~P~~~~a~~~la~~~~~~g~~ 653 (1157)
T PRK11447 581 NRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARA--AYQRVLTR-----EPGNADARLGLIEVDIAQGDL 653 (1157)
T ss_pred HHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHH--HHHHHHHh-----CCCCHHHHHHHHHHHHHCCCH
Confidence 124455666777788888888888888 88888855 455432222 45567888
Q ss_pred CCChhhHHHhhhcCccccchhhHhhhhCCC-CccchhhheecccccccC
Q 047932 550 SPGDTMFSTALLMDPDCSCDLESLIHNTDL-DQDELAYVITNSTWLLMP 597 (598)
Q Consensus 550 ~~a~~~~~~~l~~~P~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~ 597 (598)
++|++.++.+++..|+++..+..+.+.... ...+.|....+++..+.|
T Consensus 654 ~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~ 702 (1157)
T PRK11447 654 AAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAK 702 (1157)
T ss_pred HHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCc
Confidence 888888888888888888776655443321 122445555555555443
No 11
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.96 E-value=4.7e-24 Score=224.18 Aligned_cols=513 Identities=12% Similarity=0.026 Sum_probs=284.1
Q ss_pred cccCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhc--cHHHHHH
Q 047932 49 DINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINC--RIMEAAA 126 (598)
Q Consensus 49 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~--~~~~a~~ 126 (598)
....|++++|+..|+.+++.+|. ++.++..++.+|.+.|++++|+..+++..+. .|+...+..++.. +.++|..
T Consensus 54 ~~~~Gd~~~A~~~l~~Al~~dP~--n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l--dP~n~~~~~~La~i~~~~kA~~ 129 (987)
T PRK09782 54 AQKNNDEATAIREFEYIHQQVPD--NIPLTLYLAEAYRHFGHDDRARLLLEDQLKR--HPGDARLERSLAAIPVEVKSVT 129 (987)
T ss_pred HHhCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHHHHhccChhHHH
Confidence 44669999999999999999998 7899999999999999999999999999987 5665555554443 7778888
Q ss_pred HHHHHHHcCCCCCHhhHHHHHHH--------HHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHH-HHHHHHhcCCH
Q 047932 127 LFTKLRVFGCEPDVFTYNTLING--------LCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNT-IIDGVCKEGFV 197 (598)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~l~~~--------~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-li~~~~~~g~~ 197 (598)
+++++....+. +..++..+... |.+.+ +|.+.++ ..... ..|+..+... +...|.+.|++
T Consensus 130 ~ye~l~~~~P~-n~~~~~~la~~~~~~~~l~y~q~e---qAl~AL~-lr~~~------~~~~~~vL~L~~~rlY~~l~dw 198 (987)
T PRK09782 130 TVEELLAQQKA-CDAVPTLRCRSEVGQNALRLAQLP---VARAQLN-DATFA------ASPEGKTLRTDLLQRAIYLKQW 198 (987)
T ss_pred HHHHHHHhCCC-ChhHHHHHHHHhhccchhhhhhHH---HHHHHHH-HhhhC------CCCCcHHHHHHHHHHHHHHhCH
Confidence 88888776422 33444444443 44443 3333333 11111 1222333333 36666667777
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHH
Q 047932 198 DKAMELFLQMKDENINPNVVTYNSLIHCFSH-ADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDL 276 (598)
Q Consensus 198 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 276 (598)
++|++++.++.+.+.. +......|..+|.. .++ +.+..+++.. +..+...+..++..|.+.|+.++|.+++++
T Consensus 199 ~~Ai~lL~~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~~----lk~d~~l~~ala~~yi~~G~~~~A~~~L~~ 272 (987)
T PRK09782 199 SQADTLYNEARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQG----IFTDPQSRITYATALAYRGEKARLQHYLIE 272 (987)
T ss_pred HHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhchh----cccCHHHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 7777776666665322 33334444445544 244 4444443321 123444455555555555555555555444
Q ss_pred HHhcCC--------------------------------------------------------------------------
Q 047932 277 MIQIGV-------------------------------------------------------------------------- 282 (598)
Q Consensus 277 ~~~~~~-------------------------------------------------------------------------- 282 (598)
+.....
T Consensus 273 ~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 352 (987)
T PRK09782 273 NKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVS 352 (987)
T ss_pred CcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhc
Confidence 322100
Q ss_pred --------------------CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-C-CCCChhhHHHHHHHHHhcCC---H
Q 047932 283 --------------------HPNTFVYNTLMDGFCLTGRVNHAKELFVSMESN-G-CMHDVVSYTTLINGYCKTKN---V 337 (598)
Q Consensus 283 --------------------~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~---~ 337 (598)
+-+......+.-...+.|+.++|.++|+..... + ...+......++..|.+.+. .
T Consensus 353 ~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 432 (987)
T PRK09782 353 VATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATP 432 (987)
T ss_pred cccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccch
Confidence 001111111112223445555555555554431 0 01122233345555555444 2
Q ss_pred HHHHHH-------------------------HHHHccCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcC
Q 047932 338 EEALNL-------------------------YRKMLPKGIRP--TVVTYSTLFLGLFEVHQVEHALKLFDEMQHNDVAAD 390 (598)
Q Consensus 338 ~~A~~~-------------------------~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 390 (598)
.++..+ +...... .++ +...+..+..++.. ++.++|...+.+.... .|+
T Consensus 433 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~-~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd 508 (987)
T PRK09782 433 AKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGD-MSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPD 508 (987)
T ss_pred HHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhccc-CCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCc
Confidence 222222 1111111 122 45555666655554 6666677766666554 234
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 047932 391 TYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHG 470 (598)
Q Consensus 391 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 470 (598)
......+..++...|++++|...|+++... +|+...+..+..++...|++++|...+++..+.+ +.+...+..+...
T Consensus 509 ~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~ 585 (987)
T PRK09782 509 AWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQ 585 (987)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHH
Confidence 333333444445677777777777766543 3333445555666666777777777777666642 1122222233333
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccccchhHHHHHHHhcccCCCCCChHHHHH----HHHHh
Q 047932 471 LCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFIRNNETSKSSRGKLMSQMSSCWSMCFQPKTLICSI----SIMLQ 546 (598)
Q Consensus 471 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~----~~~~~ 546 (598)
+.+.|++++|...+++.++. .|+...+..+..++.+.|++++|+. .++++.+. .|+...... .+...
T Consensus 586 l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~--~l~~AL~l-----~Pd~~~a~~nLG~aL~~~ 656 (987)
T PRK09782 586 RYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVS--DLRAALEL-----EPNNSNYQAALGYALWDS 656 (987)
T ss_pred HHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHH--HHHHHHHh-----CCCCHHHHHHHHHHHHHC
Confidence 44457777777777777654 3456666666667777777777777 77776643 555544333 34445
Q ss_pred CCCCCChhhHHHhhhcCccccchhhHhhhhCCCCcc-chhhheecccccccCC
Q 047932 547 KDMSPGDTMFSTALLMDPDCSCDLESLIHNTDLDQD-ELAYVITNSTWLLMPN 598 (598)
Q Consensus 547 ~~~~~a~~~~~~~l~~~P~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~ 598 (598)
|+.++|+..++++++++|+++.++.++.+......+ +.|...+++|.++.|+
T Consensus 657 G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~ 709 (987)
T PRK09782 657 GDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDN 709 (987)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 666777777777777777777766666555554333 4566666666666664
No 12
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.95 E-value=2.7e-24 Score=200.63 Aligned_cols=425 Identities=14% Similarity=0.109 Sum_probs=268.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhc------cHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHH
Q 047932 78 FNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINC------RIMEAAALFTKLRVFGCEPDVFTYNTLINGLC 151 (598)
Q Consensus 78 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 151 (598)
...+..-..+.|++++|.+--...-..+ |...--..++.. +++....--....+.. +.-..+|..+...+-
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d--~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~k 127 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED--PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILK 127 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC--CCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHH
Confidence 4456666667888888887766554432 221111112222 3333222222222221 224556777777777
Q ss_pred hcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHH-HHHHHHHHHhcC
Q 047932 152 RTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVT-YNSLIHCFSHAD 230 (598)
Q Consensus 152 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~ 230 (598)
..|++++|+..++.+.+.. +.....|..+..++...|+.+.|.+.|.+..+. .|+... ...+.......|
T Consensus 128 erg~~~~al~~y~~aiel~-------p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~G 198 (966)
T KOG4626|consen 128 ERGQLQDALALYRAAIELK-------PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEG 198 (966)
T ss_pred HhchHHHHHHHHHHHHhcC-------chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhc
Confidence 7777777777777777754 334667777777777777777777777777664 344332 233444445567
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 047932 231 DWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTLMDGFCLTGRVNHAKELFV 310 (598)
Q Consensus 231 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 310 (598)
++++|...|.+.++.. +--...|+.|.-.+-.+|+...|++.|++.++.+. .-...|..|...|...+.+++|...|.
T Consensus 199 rl~ea~~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP-~f~dAYiNLGnV~ke~~~~d~Avs~Y~ 276 (966)
T KOG4626|consen 199 RLEEAKACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDP-NFLDAYINLGNVYKEARIFDRAVSCYL 276 (966)
T ss_pred ccchhHHHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCC-cchHHHhhHHHHHHHHhcchHHHHHHH
Confidence 7777777777766642 11234667777777777777777777777776531 134566677777777777777777777
Q ss_pred HHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCc
Q 047932 311 SMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPT-VVTYSTLFLGLFEVHQVEHALKLFDEMQHNDVAA 389 (598)
Q Consensus 311 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 389 (598)
+..... +.....+..+...|..+|..+-|+..|++.++. .|+ ...|+.+..++-..|++.+|.+.|.+.+... +.
T Consensus 277 rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~ 352 (966)
T KOG4626|consen 277 RALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PN 352 (966)
T ss_pred HHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-Cc
Confidence 766553 334556666666677777777777777777665 333 4567777777777777777777777776653 44
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHH
Q 047932 390 DTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPN-VVTYNIMI 468 (598)
Q Consensus 390 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~ 468 (598)
.....+.|...+...|.+++|..+|....... +--....+.|...|-.+|++++|+..|++.++ +.|+ ...|+.+.
T Consensus 353 hadam~NLgni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmG 429 (966)
T KOG4626|consen 353 HADAMNNLGNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMG 429 (966)
T ss_pred cHHHHHHHHHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcc
Confidence 46666777777777777777777777766542 22344566777777777777777777777766 4565 45677777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCccccchhHHHHHHHhc
Q 047932 469 HGLCNDGQMDKAHDLFLDMEAKGVEPD-CVIFNTIMLGFIRNNETSKSSRGKLMSQMSSC 527 (598)
Q Consensus 469 ~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 527 (598)
..|-..|+.+.|++.+.+++.. .|. .+.++.|...|...|+..+|+. -++..++.
T Consensus 430 nt~ke~g~v~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~AI~--sY~~aLkl 485 (966)
T KOG4626|consen 430 NTYKEMGDVSAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNIPEAIQ--SYRTALKL 485 (966)
T ss_pred hHHHHhhhHHHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCcHHHHH--HHHHHHcc
Confidence 7777777777777777777653 343 4566677777777777777777 77777633
No 13
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.95 E-value=5e-24 Score=198.90 Aligned_cols=440 Identities=13% Similarity=0.070 Sum_probs=352.8
Q ss_pred ccCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHH---Hhc--cHHHH
Q 047932 50 INLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL---INC--RIMEA 124 (598)
Q Consensus 50 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l---l~~--~~~~a 124 (598)
.+.|++.+|.+.-...-..+|. +......+-.++.+..+++....--...++... --..+|..+ +.. +.++|
T Consensus 59 yq~gd~~~a~~h~nmv~~~d~t--~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~-q~ae~ysn~aN~~kerg~~~~a 135 (966)
T KOG4626|consen 59 YQGGDYKQAEKHCNMVGQEDPT--NTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNP-QGAEAYSNLANILKERGQLQDA 135 (966)
T ss_pred HhccCHHHHHHHHhHhhccCCC--cccceeeehhhhhcccchhhhhhhhhhhhhccc-hHHHHHHHHHHHHHHhchHHHH
Confidence 4789999999998888777776 555555566666666666655444443443321 112233322 222 88999
Q ss_pred HHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhH-HHHHHHHHHhcCCHHHHHHH
Q 047932 125 AALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVT-YNTIIDGVCKEGFVDKAMEL 203 (598)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~ 203 (598)
+.+++.+++... ..+..|..+..++...|+.+.|.+.|...++.+ |+... ...+...+-..|+..+|...
T Consensus 136 l~~y~~aiel~p-~fida~inla~al~~~~~~~~a~~~~~~alqln--------P~l~ca~s~lgnLlka~Grl~ea~~c 206 (966)
T KOG4626|consen 136 LALYRAAIELKP-KFIDAYINLAAALVTQGDLELAVQCFFEALQLN--------PDLYCARSDLGNLLKAEGRLEEAKAC 206 (966)
T ss_pred HHHHHHHHhcCc-hhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--------cchhhhhcchhHHHHhhcccchhHHH
Confidence 999999988742 257789999999999999999999999999865 55443 34455666678999999999
Q ss_pred HHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCC
Q 047932 204 FLQMKDENINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPN-VVTFSVIVDELCKNGKMEEASRLLDLMIQIGV 282 (598)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 282 (598)
|.+..+.... =...|..|...+...|+.-.|+..|++..+. .|+ ...|..|...|...+.+++|...+.+.....
T Consensus 207 YlkAi~~qp~-fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr- 282 (966)
T KOG4626|consen 207 YLKAIETQPC-FAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR- 282 (966)
T ss_pred HHHHHhhCCc-eeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-
Confidence 9998875321 3568999999999999999999999999875 444 4588899999999999999999999988763
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHH
Q 047932 283 HPNTFVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTL 362 (598)
Q Consensus 283 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 362 (598)
+....++..+...|...|++|.|+..|++.++.. |.-...|+.|..++-..|+..+|.+.|.+....... .....+.+
T Consensus 283 pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~-hadam~NL 360 (966)
T KOG4626|consen 283 PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPN-HADAMNNL 360 (966)
T ss_pred CcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCc-cHHHHHHH
Confidence 2356678888899999999999999999999875 446788999999999999999999999999886432 46778899
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHHcCC
Q 047932 363 FLGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELD-IISYSCLIDGLCKIGK 441 (598)
Q Consensus 363 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~ 441 (598)
...+...|.++.|..+|....+.. +.-...++.|...|.++|++++|+..|++++.. .|+ ...|+.+...|-..|+
T Consensus 361 gni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--~P~fAda~~NmGnt~ke~g~ 437 (966)
T KOG4626|consen 361 GNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYKQQGNLDDAIMCYKEALRI--KPTFADALSNMGNTYKEMGD 437 (966)
T ss_pred HHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--CchHHHHHHhcchHHHHhhh
Confidence 999999999999999999998863 334678899999999999999999999999875 444 6689999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCccc
Q 047932 442 LETAWELFQSLSRVGLLPN-VVTYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPD-CVIFNTIMLGFIRNNETSK 514 (598)
Q Consensus 442 ~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~ 514 (598)
.+.|++.+.+.+. +.|. ...++.|...|-..|++.+|+.-|++.++. +|| +..+-.++.++---.++.+
T Consensus 438 v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLkl--kPDfpdA~cNllh~lq~vcdw~D 508 (966)
T KOG4626|consen 438 VSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKL--KPDFPDAYCNLLHCLQIVCDWTD 508 (966)
T ss_pred HHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHcc--CCCCchhhhHHHHHHHHHhcccc
Confidence 9999999999988 4565 567899999999999999999999999975 565 4667667666544444444
No 14
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.93 E-value=4.7e-21 Score=188.60 Aligned_cols=534 Identities=14% Similarity=0.094 Sum_probs=358.2
Q ss_pred HHHHHHhhhhhhcchhHHHHHHHhhccCCcccccCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 047932 18 AKLKESLRLTVKDGASIEKFLKERSKSSGQGDINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSL 97 (598)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 97 (598)
........++..+.+++..++-+....| +.|+|..|+.+|..++...|. ..+.....+...+.+.|+.+.|+..
T Consensus 148 ~A~a~F~~Vl~~sp~Nil~LlGkA~i~y-----nkkdY~~al~yyk~al~inp~-~~aD~rIgig~Cf~kl~~~~~a~~a 221 (1018)
T KOG2002|consen 148 DADAQFHFVLKQSPDNILALLGKARIAY-----NKKDYRGALKYYKKALRINPA-CKADVRIGIGHCFWKLGMSEKALLA 221 (1018)
T ss_pred HHHHHHHHHHhhCCcchHHHHHHHHHHh-----ccccHHHHHHHHHHHHhcCcc-cCCCccchhhhHHHhccchhhHHHH
Confidence 3445566666677777777777777655 589999999999999998887 3344445556777899999999999
Q ss_pred HHHHHhCCCCCCHHhHHHHHhc---------cHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047932 98 FKRLNSTGLFPDLYTHSILINC---------RIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMAN 168 (598)
Q Consensus 98 ~~~~~~~~~~p~~~~~~~ll~~---------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 168 (598)
|.++++. .|........|.. .+..+...+...-..+ .-++.+.+.|...|.-.|+++.++.+...+..
T Consensus 222 ~~ralqL--dp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~ 298 (1018)
T KOG2002|consen 222 FERALQL--DPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIK 298 (1018)
T ss_pred HHHHHhc--ChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHH
Confidence 9999976 4543333222222 5667777777665544 33677788899999999999999999988876
Q ss_pred cCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 047932 169 GNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVH 248 (598)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 248 (598)
.... -..-...|..+..+|...|++++|...|.+..+.....-+-.+.-|...|.+.|+++.+...|+.+.+. .+
T Consensus 299 ~t~~----~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~-~p 373 (1018)
T KOG2002|consen 299 NTEN----KSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ-LP 373 (1018)
T ss_pred hhhh----hHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHh-Cc
Confidence 5410 012245678889999999999999999988887633222344556788899999999999999999886 34
Q ss_pred CCHhhHHHHHHHHHhCC----CHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----HCCCCCC
Q 047932 249 PNVVTFSVIVDELCKNG----KMEEASRLLDLMIQIGVHPNTFVYNTLMDGFCLTGRVNHAKELFVSME----SNGCMHD 320 (598)
Q Consensus 249 ~~~~~~~~l~~~~~~~g----~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~----~~~~~~~ 320 (598)
.+..+...+...|...+ ..+.|..++......- +.|...|..+..++....-+ .++..|..+. ..+.++.
T Consensus 374 ~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~-~sL~~~~~A~d~L~~~~~~ip 451 (1018)
T KOG2002|consen 374 NNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPW-ASLDAYGNALDILESKGKQIP 451 (1018)
T ss_pred chHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChH-HHHHHHHHHHHHHHHcCCCCC
Confidence 45667777777777664 4566666666666553 44666676666666543333 3355554432 3344466
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHccC---CCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHhhCC-----
Q 047932 321 VVSYTTLINGYCKTKNVEEALNLYRKMLPK---GIRPTV------VTYSTLFLGLFEVHQVEHALKLFDEMQHND----- 386 (598)
Q Consensus 321 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----- 386 (598)
+...|.+...+...|++.+|...|...... ...++. .+--.+..+.-..++.+.|.+.|..+.+..
T Consensus 452 ~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId 531 (1018)
T KOG2002|consen 452 PEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYID 531 (1018)
T ss_pred HHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHH
Confidence 677777777777778888777777766543 111111 122233334444455555555555554432
Q ss_pred ----------------------------CCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhC-CCCCCHHHHHHHHHHHH
Q 047932 387 ----------------------------VAADTYIYNTFIDGLCKNGFVLEALELFCAIGNS-KYELDIISYSCLIDGLC 437 (598)
Q Consensus 387 ----------------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~ 437 (598)
...++..+..+...+.+...+..|..-|..+.+. ...+|..+...|...|.
T Consensus 532 ~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~ 611 (1018)
T KOG2002|consen 532 AYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYI 611 (1018)
T ss_pred HHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHH
Confidence 0223333333444444444444444433333321 11245566666666554
Q ss_pred Hc------------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 047932 438 KI------------GKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLG 505 (598)
Q Consensus 438 ~~------------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 505 (598)
.. +..++|+++|.+.++.. +-|...-|.+.-.++..|++.+|..+|.+..+.. .....+|..+.++
T Consensus 612 ~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~ 689 (1018)
T KOG2002|consen 612 QALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT-SDFEDVWLNLAHC 689 (1018)
T ss_pred HHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHH-hhCCceeeeHHHH
Confidence 32 45788899999888864 3367777888888999999999999999998864 3466789999999
Q ss_pred HHhcCCccccchhHHHHHHHhcccCCCCCChHHHHH---HHHHhCCCCCChhhHHHhhhcCccccchhhHh
Q 047932 506 FIRNNETSKSSRGKLMSQMSSCWSMCFQPKTLICSI---SIMLQKDMSPGDTMFSTALLMDPDCSCDLESL 573 (598)
Q Consensus 506 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~---~~~~~~~~~~a~~~~~~~l~~~P~~~~~~~~l 573 (598)
|..+|++..|++ .|+...+++ .-.-+...... .....|++.+|.....+++.+.|+|+...-++
T Consensus 690 ~~e~~qy~~AIq--mYe~~lkkf--~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~ 756 (1018)
T KOG2002|consen 690 YVEQGQYRLAIQ--MYENCLKKF--YKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNL 756 (1018)
T ss_pred HHHHHHHHHHHH--HHHHHHHHh--cccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHH
Confidence 999999999999 999998883 32223333333 44556889999999999999999999865544
No 15
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.93 E-value=1.3e-19 Score=190.95 Aligned_cols=517 Identities=11% Similarity=0.016 Sum_probs=348.2
Q ss_pred CcccccCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-CCHHhHHHHH-------
Q 047932 46 GQGDINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLF-PDLYTHSILI------- 117 (598)
Q Consensus 46 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~ll------- 117 (598)
+..+++.|++++|+..++++.+.+|. +...+..+... +++.+|...|+++...... ++...+...+
T Consensus 85 A~~yl~~g~~~~A~~~~~kAv~ldP~--n~~~~~~La~i----~~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l 158 (987)
T PRK09782 85 AEAYRHFGHDDRARLLLEDQLKRHPG--DARLERSLAAI----PVEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNAL 158 (987)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCcc--cHHHHHHHHHh----ccChhHHHHHHHHHHhCCCChhHHHHHHHHhhccchh
Confidence 44456899999999999999999886 77777666433 8899999999999987432 2222233332
Q ss_pred -hccHHHHHHHHHHHHHcCCCCCHhhHHHH-HHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHh-c
Q 047932 118 -NCRIMEAAALFTKLRVFGCEPDVFTYNTL-INGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCK-E 194 (598)
Q Consensus 118 -~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~-~ 194 (598)
-.+.++|...++ .......|+..+.... ...|.+.|++++|++++.++.+.+ +.+......|...|.. .
T Consensus 159 ~y~q~eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~-------pl~~~~~~~L~~ay~q~l 230 (987)
T PRK09782 159 RLAQLPVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQN-------TLSAAERRQWFDVLLAGQ 230 (987)
T ss_pred hhhhHHHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcC-------CCCHHHHHHHHHHHHHhh
Confidence 115677777776 4444333445544444 888999999999999999888876 2333334444444444 2
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----------------------------
Q 047932 195 GFVDKAMELFLQMKDENINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQG---------------------------- 246 (598)
Q Consensus 195 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------------------------- 246 (598)
++ +.+..+++. .++.+...+..++..|...|+.++|.++++++....
T Consensus 231 ~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~ 305 (987)
T PRK09782 231 LD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYT 305 (987)
T ss_pred CH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchh
Confidence 33 444444322 112244444444555555555555444444432110
Q ss_pred --------------------------------C----------------------------------CCCHhhHHHHHHH
Q 047932 247 --------------------------------V----------------------------------HPNVVTFSVIVDE 260 (598)
Q Consensus 247 --------------------------------~----------------------------------~~~~~~~~~l~~~ 260 (598)
+ +-+......+.-.
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~ 385 (987)
T PRK09782 306 VQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQ 385 (987)
T ss_pred hhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 0 0011112222223
Q ss_pred HHhCCCHHHHHHHHHHHHhc-C-CCcCHHHHHHHHHHHHhcCC---HHHHHHH----------------------HHHHH
Q 047932 261 LCKNGKMEEASRLLDLMIQI-G-VHPNTFVYNTLMDGFCLTGR---VNHAKEL----------------------FVSME 313 (598)
Q Consensus 261 ~~~~g~~~~a~~~~~~~~~~-~-~~~~~~~~~~ll~~~~~~g~---~~~a~~~----------------------~~~~~ 313 (598)
..+.|+.++|.++++..... + -..+.....-++..|.+.+. ..++..+ +....
T Consensus 386 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (987)
T PRK09782 386 LMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIV 465 (987)
T ss_pred HHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHH
Confidence 44567778888888877662 1 22244555577777777665 3333322 11111
Q ss_pred HC-C-CCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCc
Q 047932 314 SN-G-CMH--DVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFEVHQVEHALKLFDEMQHNDVAA 389 (598)
Q Consensus 314 ~~-~-~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 389 (598)
.. + .++ +...|..+..++.. +++++|+..+.+.... .|+......+...+...|++++|...|+++... +|
T Consensus 466 ~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p 540 (987)
T PRK09782 466 RLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DM 540 (987)
T ss_pred HhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CC
Confidence 11 1 134 67778888888876 8899999988887765 356554444555667899999999999998664 44
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 047932 390 DTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIH 469 (598)
Q Consensus 390 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 469 (598)
+...+..+..++.+.|++++|..+++++.+.. +.+...+..+...+...|++++|...+++..+. .|+...+..+..
T Consensus 541 ~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~ 617 (987)
T PRK09782 541 SNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARAT 617 (987)
T ss_pred CcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHH
Confidence 44556677888999999999999999998764 334444444455555679999999999999985 567888999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccccchhHHHHHHHhcccCCCCCChHHHHH----HHHH
Q 047932 470 GLCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFIRNNETSKSSRGKLMSQMSSCWSMCFQPKTLICSI----SIML 545 (598)
Q Consensus 470 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~----~~~~ 545 (598)
++.+.|++++|+..+++.+... |.+...+..+..++...|++++|+. .++++.+. .|+...... ++..
T Consensus 618 ~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~--~l~~AL~l-----~P~~~~a~~nLA~al~~ 689 (987)
T PRK09782 618 IYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSRE--MLERAHKG-----LPDDPALIRQLAYVNQR 689 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHH--HHHHHHHh-----CCCCHHHHHHHHHHHHH
Confidence 9999999999999999999875 6677888899999999999999999 99999965 576543333 6677
Q ss_pred hCCCCCChhhHHHhhhcCccccchhhHhhhhCCCCcc-chhhheecccccccC
Q 047932 546 QKDMSPGDTMFSTALLMDPDCSCDLESLIHNTDLDQD-ELAYVITNSTWLLMP 597 (598)
Q Consensus 546 ~~~~~~a~~~~~~~l~~~P~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~ 597 (598)
.|++++|+..++++++++|+++.+.+...+....+.. +.+.+-.+++|.+.|
T Consensus 690 lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~ 742 (987)
T PRK09782 690 LDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSF 742 (987)
T ss_pred CCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 8999999999999999999999988766554443221 445555666666554
No 16
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.92 E-value=5.5e-20 Score=190.64 Aligned_cols=257 Identities=13% Similarity=0.051 Sum_probs=200.4
Q ss_pred CCCHHHHHHHHHHHHhcC-CCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 047932 264 NGKMEEASRLLDLMIQIG-VHP-NTFVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEAL 341 (598)
Q Consensus 264 ~g~~~~a~~~~~~~~~~~-~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 341 (598)
.+.+++|.+.|+..+..+ ..| ....+..+..++...|++++|...++...... +.....|..+...+...|++++|+
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~ 385 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAE 385 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHH
Confidence 467889999999988764 222 44567777888888999999999999988764 335667888888888999999999
Q ss_pred HHHHHHccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCC
Q 047932 342 NLYRKMLPKGIRPTVVTYSTLFLGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSK 421 (598)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 421 (598)
..|+++...... +...+..+...+...|++++|...|++.++.. +.+...+..+..++.+.|++++|+..|++..+..
T Consensus 386 ~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 463 (615)
T TIGR00990 386 EDFDKALKLNSE-DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF 463 (615)
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 999988876432 57788888888999999999999999988864 4567777888888999999999999999888653
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH------HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 047932 422 YELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVV------TYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPD 495 (598)
Q Consensus 422 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 495 (598)
+.+...++.+...+...|++++|+..|++..+.....+.. .++..+..+...|++++|.+++++.+... +.+
T Consensus 464 -P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~-p~~ 541 (615)
T TIGR00990 464 -PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID-PEC 541 (615)
T ss_pred -CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CCc
Confidence 4467888889999999999999999999988743211111 11122223334689999999999988764 445
Q ss_pred HHHHHHHHHHHHhcCCccccchhHHHHHHHhc
Q 047932 496 CVIFNTIMLGFIRNNETSKSSRGKLMSQMSSC 527 (598)
Q Consensus 496 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 527 (598)
...+..++.++.+.|++++|.+ +++++.+.
T Consensus 542 ~~a~~~la~~~~~~g~~~eAi~--~~e~A~~l 571 (615)
T TIGR00990 542 DIAVATMAQLLLQQGDVDEALK--LFERAAEL 571 (615)
T ss_pred HHHHHHHHHHHHHccCHHHHHH--HHHHHHHH
Confidence 5678888999999999999999 99998755
No 17
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.91 E-value=1e-19 Score=188.74 Aligned_cols=402 Identities=15% Similarity=0.040 Sum_probs=294.2
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHH
Q 047932 142 TYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTYNS 221 (598)
Q Consensus 142 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 221 (598)
.+...+..+.+.|++++|+..|++.+.. .|+...|..+..+|.+.|++++|++.++...+... .+...|..
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~--------~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p-~~~~a~~~ 199 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIEC--------KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDP-DYSKALNR 199 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC-CCHHHHHH
Confidence 4566788899999999999999999884 46788899999999999999999999999998643 36778899
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcC--------------------
Q 047932 222 LIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIG-------------------- 281 (598)
Q Consensus 222 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-------------------- 281 (598)
+..+|...|++++|+..|..+...+...+.. ...++..+.. ..+........+..
T Consensus 200 ~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~-~~~~~~~~l~----~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 274 (615)
T TIGR00990 200 RANAYDGLGKYADALLDLTASCIIDGFRNEQ-SAQAVERLLK----KFAESKAKEILETKPENLPSVTFVGNYLQSFRPK 274 (615)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCccHH-HHHHHHHHHH----HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCC
Confidence 9999999999999999887765542111111 1111111111 01111111111110
Q ss_pred -----------CCcCH-HHHHHHHHH---HHhcCCHHHHHHHHHHHHHCC--CCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 047932 282 -----------VHPNT-FVYNTLMDG---FCLTGRVNHAKELFVSMESNG--CMHDVVSYTTLINGYCKTKNVEEALNLY 344 (598)
Q Consensus 282 -----------~~~~~-~~~~~ll~~---~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 344 (598)
..+.. ..+..+... ....+++++|.+.|+.....+ .+.....+..+...+...|++++|+..+
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~ 354 (615)
T TIGR00990 275 PRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADL 354 (615)
T ss_pred cchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 00000 000111111 122367899999999988764 2335567888888899999999999999
Q ss_pred HHHccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCC
Q 047932 345 RKMLPKGIRPTVVTYSTLFLGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYEL 424 (598)
Q Consensus 345 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 424 (598)
++.....+. ....|..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|...|++.++.. +.
T Consensus 355 ~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~ 431 (615)
T TIGR00990 355 SKSIELDPR-VTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PD 431 (615)
T ss_pred HHHHHcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-cc
Confidence 999876432 46678888888999999999999999998864 5568888899999999999999999999998775 44
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HH------
Q 047932 425 DIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPD-CV------ 497 (598)
Q Consensus 425 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~------ 497 (598)
+...+..+..++.+.|++++|+..+++..+.. +.+...++.+...+...|++++|++.|++.+... |+ ..
T Consensus 432 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~--p~~~~~~~~~~ 508 (615)
T TIGR00990 432 FIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELE--KETKPMYMNVL 508 (615)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcC--CccccccccHH
Confidence 67788889999999999999999999988752 3357788889999999999999999999998753 22 11
Q ss_pred -HHHHHHHHHHhcCCccccchhHHHHHHHhcccCCCCCChHHHHH----HHHHhCCCCCChhhHHHhhhcCccccchh
Q 047932 498 -IFNTIMLGFIRNNETSKSSRGKLMSQMSSCWSMCFQPKTLICSI----SIMLQKDMSPGDTMFSTALLMDPDCSCDL 570 (598)
Q Consensus 498 -~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~----~~~~~~~~~~a~~~~~~~l~~~P~~~~~~ 570 (598)
.+......+...|++++|.+ +++++.+. .|+...... ++...|+.++|+..+++++++.+.....+
T Consensus 509 ~l~~~a~~~~~~~~~~~eA~~--~~~kAl~l-----~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e~~ 579 (615)
T TIGR00990 509 PLINKALALFQWKQDFIEAEN--LCEKALII-----DPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGELV 579 (615)
T ss_pred HHHHHHHHHHHHhhhHHHHHH--HHHHHHhc-----CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHHHH
Confidence 11222223444799999999 99998854 566643222 56778999999999999999988755543
No 18
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.90 E-value=1.1e-20 Score=186.21 Aligned_cols=307 Identities=14% Similarity=0.100 Sum_probs=178.0
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC---HHHHHHHH
Q 047932 147 INGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPN---VVTYNSLI 223 (598)
Q Consensus 147 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~ 223 (598)
+..+...|++++|+..|+++.+.+ +.+..++..+...+...|++++|..+++.+...+..++ ...+..++
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La 114 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD-------PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELG 114 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC-------cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 344556666666666666666654 34455666666666666666666666666655321111 13445555
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHH
Q 047932 224 HCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTLMDGFCLTGRVN 303 (598)
Q Consensus 224 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 303 (598)
..|...|++++|..+|+++.+.. +.+..++..++..+.+.|++++|.+.++.+.+.+..+....
T Consensus 115 ~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--------------- 178 (389)
T PRK11788 115 QDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE--------------- 178 (389)
T ss_pred HHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH---------------
Confidence 55666666666666666655431 23344555555555555555555555555554332111000
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 047932 304 HAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFEVHQVEHALKLFDEMQ 383 (598)
Q Consensus 304 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 383 (598)
....+..+...+...|++++|...++++.+... .+...+..+...+...|++++|..+++++.
T Consensus 179 ----------------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 241 (389)
T PRK11788 179 ----------------IAHFYCELAQQALARGDLDAARALLKKALAADP-QCVRASILLGDLALAQGDYAAAIEALERVE 241 (389)
T ss_pred ----------------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 011233344455555555555555555554321 133445555566666666666666666665
Q ss_pred hCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHH
Q 047932 384 HNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVT 463 (598)
Q Consensus 384 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 463 (598)
..+......++..++.+|...|++++|...++++.+. .|+...+..++..+.+.|++++|..+++++.+. .|+..+
T Consensus 242 ~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~ 317 (389)
T PRK11788 242 EQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRG 317 (389)
T ss_pred HHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHH
Confidence 5432222345566677777777777777777777655 345455577777777788888888888777664 567777
Q ss_pred HHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHH
Q 047932 464 YNIMIHGLCN---DGQMDKAHDLFLDMEAKGVEPDCV 497 (598)
Q Consensus 464 ~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~p~~~ 497 (598)
++.++..+.. .|+.++++.++++|.++++.|++.
T Consensus 318 ~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 318 FHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 7776666553 457777888888777766666655
No 19
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.90 E-value=1.2e-20 Score=186.07 Aligned_cols=303 Identities=15% Similarity=0.140 Sum_probs=230.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcC---HHHHHHHHHHHHhc
Q 047932 223 IHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPN---TFVYNTLMDGFCLT 299 (598)
Q Consensus 223 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~ 299 (598)
...+...|++++|...|.++.+.+ +.+..++..+...+...|++++|..+++.+...+..++ ...+..++..|...
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 344556677777777777776653 23445666677777777777777777777766432111 23566677777888
Q ss_pred CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCH----HHHHHHHHHHHhcCCHHHH
Q 047932 300 GRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTV----VTYSTLFLGLFEVHQVEHA 375 (598)
Q Consensus 300 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a 375 (598)
|++++|..+|+++.+.. +.+..++..++..+.+.|++++|.+.++.+...+..+.. ..+..++..+...|++++|
T Consensus 121 g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 199 (389)
T PRK11788 121 GLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAA 199 (389)
T ss_pred CCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHH
Confidence 88888888888877653 446677788888888888888888888888765433221 2345677788899999999
Q ss_pred HHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 047932 376 LKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRV 455 (598)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 455 (598)
...|+++.+.. +.+...+..++..+.+.|++++|..+|+++...+......++..++.+|...|++++|...++++.+.
T Consensus 200 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 278 (389)
T PRK11788 200 RALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE 278 (389)
T ss_pred HHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999998764 44567788888999999999999999999987643323467888999999999999999999999885
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCCccccchhHHHHHHHhcccCCC
Q 047932 456 GLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFIR---NNETSKSSRGKLMSQMSSCWSMCF 532 (598)
Q Consensus 456 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~ 532 (598)
.|+...+..++..+.+.|++++|..+++++.+. .|+..++..++..+.. .|+.+++.. +++++.++ ++
T Consensus 279 --~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~--~~~~~~~~---~~ 349 (389)
T PRK11788 279 --YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLL--LLRDLVGE---QL 349 (389)
T ss_pred --CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHH--HHHHHHHH---HH
Confidence 466666788899999999999999999999875 5888888888877664 568899999 99999987 66
Q ss_pred CCChH
Q 047932 533 QPKTL 537 (598)
Q Consensus 533 ~p~~~ 537 (598)
.|++.
T Consensus 350 ~~~p~ 354 (389)
T PRK11788 350 KRKPR 354 (389)
T ss_pred hCCCC
Confidence 77765
No 20
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.90 E-value=1.6e-19 Score=190.44 Aligned_cols=404 Identities=7% Similarity=0.017 Sum_probs=223.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 047932 143 YNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTYNSL 222 (598)
Q Consensus 143 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 222 (598)
..-.+.+....|+.++|++++..+.... +.+...+..+...+.+.|++++|.++|++..... +.+...+..+
T Consensus 18 ~~d~~~ia~~~g~~~~A~~~~~~~~~~~-------~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 89 (765)
T PRK10049 18 IADWLQIALWAGQDAEVITVYNRYRVHM-------QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGL 89 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 3444555556666666666666665422 3344456666666666666666666666665542 2244555566
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCH
Q 047932 223 IHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTLMDGFCLTGRV 302 (598)
Q Consensus 223 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 302 (598)
+.++...|++++|+..++++.+. .+.+.. +..+..++...|+.++|+..++++.+... .+...+..+..++...|..
T Consensus 90 a~~l~~~g~~~eA~~~l~~~l~~-~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P-~~~~~~~~la~~l~~~~~~ 166 (765)
T PRK10049 90 ILTLADAGQYDEALVKAKQLVSG-APDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAP-QTQQYPTEYVQALRNNRLS 166 (765)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh-CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCh
Confidence 66666666666666666666654 223344 55566666666666666666666666532 2344444555555566666
Q ss_pred HHHHHHHHHHHHCCCCCCh------hhHHHHHHHHH-----hcCCH---HHHHHHHHHHccC-CCCCCHH-HHH----HH
Q 047932 303 NHAKELFVSMESNGCMHDV------VSYTTLINGYC-----KTKNV---EEALNLYRKMLPK-GIRPTVV-TYS----TL 362 (598)
Q Consensus 303 ~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~-----~~~~~---~~A~~~~~~~~~~-~~~~~~~-~~~----~l 362 (598)
+.|.+.++.+... |+. .....++.... ..+++ ++|++.++.+... ...|+.. .+. ..
T Consensus 167 e~Al~~l~~~~~~---p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~ 243 (765)
T PRK10049 167 APALGAIDDANLT---PAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDR 243 (765)
T ss_pred HHHHHHHHhCCCC---HHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHH
Confidence 6666666544431 110 01111122111 11223 5566666666532 1112111 111 11
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCC-cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCC---CHHHHHHHHHHHHH
Q 047932 363 FLGLFEVHQVEHALKLFDEMQHNDVA-ADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYEL---DIISYSCLIDGLCK 438 (598)
Q Consensus 363 ~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~ 438 (598)
+..+...+++++|+..|+.+.+.+.+ |+. ....+..++...|++++|+.+|+++....... .......+..++..
T Consensus 244 l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~ 322 (765)
T PRK10049 244 LGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLE 322 (765)
T ss_pred HHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHh
Confidence 22334556777777777776665421 221 12224556677777777777777765432111 12344555556667
Q ss_pred cCCHHHHHHHHHHHHhCCC-----------CCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 047932 439 IGKLETAWELFQSLSRVGL-----------LPN---VVTYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIML 504 (598)
Q Consensus 439 ~g~~~~A~~~~~~~~~~~~-----------~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 504 (598)
.|++++|...++.+.+... .|+ ...+..+...+...|+.++|+++++++.... |.+...+..++.
T Consensus 323 ~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~ 401 (765)
T PRK10049 323 SENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYAS 401 (765)
T ss_pred cccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 7777777777777665311 112 1233445556667777777777777776653 555666677777
Q ss_pred HHHhcCCccccchhHHHHHHHhcccCCCCCChHHHHH----HHHHhCCCCCChhhHHHhhhcCccccch
Q 047932 505 GFIRNNETSKSSRGKLMSQMSSCWSMCFQPKTLICSI----SIMLQKDMSPGDTMFSTALLMDPDCSCD 569 (598)
Q Consensus 505 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~----~~~~~~~~~~a~~~~~~~l~~~P~~~~~ 569 (598)
.+...|++++|++ .++++++. .|+...... .....+++++|+..++++++.+|+++.+
T Consensus 402 l~~~~g~~~~A~~--~l~~al~l-----~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~ 463 (765)
T PRK10049 402 VLQARGWPRAAEN--ELKKAEVL-----EPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGV 463 (765)
T ss_pred HHHhcCCHHHHHH--HHHHHHhh-----CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH
Confidence 7777777777777 77777643 566544333 3444667777777777777777777764
No 21
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.90 E-value=6.8e-19 Score=181.70 Aligned_cols=400 Identities=12% Similarity=0.023 Sum_probs=305.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHH
Q 047932 142 TYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTYNS 221 (598)
Q Consensus 142 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 221 (598)
-...++..+.+.|++++|..+++...... +.+...+..++.++...|++++|...++++..... .+...+..
T Consensus 44 ~~~~~~~~~~~~g~~~~A~~l~~~~l~~~-------p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P-~~~~a~~~ 115 (656)
T PRK15174 44 NIILFAIACLRKDETDVGLTLLSDRVLTA-------KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNV-CQPEDVLL 115 (656)
T ss_pred CHHHHHHHHHhcCCcchhHHHhHHHHHhC-------CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCC-CChHHHHH
Confidence 34556778889999999999999999875 55677777888888899999999999999998643 36778888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCC
Q 047932 222 LIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTLMDGFCLTGR 301 (598)
Q Consensus 222 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 301 (598)
+...+...|++++|...++++.+.. +.+...+..++..+...|++++|...++.+...... +...+..+ ..+...|+
T Consensus 116 la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~ 192 (656)
T PRK15174 116 VASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSR 192 (656)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCC
Confidence 9999999999999999999999863 445678888999999999999999999988776432 33334333 34788999
Q ss_pred HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHhcCCHHH----HHH
Q 047932 302 VNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFEVHQVEH----ALK 377 (598)
Q Consensus 302 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~ 377 (598)
+++|...++.+......++...+..+...+...|++++|+..++++...... +...+..+...+...|++++ |..
T Consensus 193 ~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~ 271 (656)
T PRK15174 193 LPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAE 271 (656)
T ss_pred HHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHH
Confidence 9999999999887643344455556677889999999999999999887543 67778889999999999985 899
Q ss_pred HHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 047932 378 LFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGL 457 (598)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 457 (598)
.|+++.+.. +.+...+..+...+...|++++|...++++.... +.+...+..+..++...|++++|+..++++.+.
T Consensus 272 ~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~-- 347 (656)
T PRK15174 272 HWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLARE-- 347 (656)
T ss_pred HHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--
Confidence 999999874 5578889999999999999999999999999765 446777888999999999999999999999885
Q ss_pred CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCC-HHHHHHHHHHHHhcCCccccchhHHHHHHHhcccCCC
Q 047932 458 LPNV-VTYNIMIHGLCNDGQMDKAHDLFLDMEAKG---VEPD-CVIFNTIMLGFIRNNETSKSSRGKLMSQMSSCWSMCF 532 (598)
Q Consensus 458 ~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 532 (598)
.|+. ..+..+..++...|++++|+..|+++.+.. .+++ ......+-.++...+..++... +..++.-. .-
T Consensus 348 ~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~~~~~ea~~~~~~~~~~~~~~~~~~~--W~~~~~~~---~~ 422 (656)
T PRK15174 348 KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHLPQSFEEGLLALDGQISAVNLPPERLD--WAWEVAGR---QS 422 (656)
T ss_pred CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhchhhHHHHHHHHHHHHHhcCCccchhh--HHHHHhcc---cc
Confidence 4554 334445678889999999999999998752 1111 1233344445555666655545 56665421 12
Q ss_pred CCChHHHHH------------HHHHhCCCCCChhhHHHhhhc
Q 047932 533 QPKTLICSI------------SIMLQKDMSPGDTMFSTALLM 562 (598)
Q Consensus 533 ~p~~~~~~~------------~~~~~~~~~~a~~~~~~~l~~ 562 (598)
.-|...|+- +=+....-+.|.+...+.+++
T Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (656)
T PRK15174 423 GIERDEWERRAKWGYLADNFLLDWLECRGEQADEPMYRLADI 464 (656)
T ss_pred cCChHHHHHHHHhhHHHHHHHHHHHHhcccchhhHHHHHhhh
Confidence 334444433 124455556666655555554
No 22
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.90 E-value=2.3e-19 Score=185.11 Aligned_cols=326 Identities=14% Similarity=0.047 Sum_probs=225.3
Q ss_pred cccCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhccHHHHHHHH
Q 047932 49 DINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCRIMEAAALF 128 (598)
Q Consensus 49 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~a~~~~ 128 (598)
+.+.|++++|+.+++..+...|. ++.++..++.+....|++++|...|++++.. .|+
T Consensus 52 ~~~~g~~~~A~~l~~~~l~~~p~--~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~--~P~------------------- 108 (656)
T PRK15174 52 CLRKDETDVGLTLLSDRVLTAKN--GRDLLRRWVISPLASSQPDAVLQVVNKLLAV--NVC------------------- 108 (656)
T ss_pred HHhcCCcchhHHHhHHHHHhCCC--chhHHHHHhhhHhhcCCHHHHHHHHHHHHHh--CCC-------------------
Confidence 45788999999999998888887 6677777777778889999988888888865 332
Q ss_pred HHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 047932 129 TKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMK 208 (598)
Q Consensus 129 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 208 (598)
+...+..+...+.+.|++++|+..++++.... +.+...+..++..+...|++++|...++.+.
T Consensus 109 ----------~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-------P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~ 171 (656)
T PRK15174 109 ----------QPEDVLLVASVLLKSKQYATVADLAEQAWLAF-------SGNSQIFALHLRTLVLMDKELQAISLARTQA 171 (656)
T ss_pred ----------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCcHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 44456667777777788888888887777754 4456677777777777788888877777766
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcCHHH
Q 047932 209 DENINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFV 288 (598)
Q Consensus 209 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 288 (598)
..... +...+..+ ..+...|++++|...++.+++....++...+..+...+...|++++|+..++.+.+.. +.+...
T Consensus 172 ~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~ 248 (656)
T PRK15174 172 QEVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAAL 248 (656)
T ss_pred HhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHH
Confidence 54322 33333333 3366777788887777777665333333344445566777788888888777777654 335666
Q ss_pred HHHHHHHHHhcCCHHH----HHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHH
Q 047932 289 YNTLMDGFCLTGRVNH----AKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFL 364 (598)
Q Consensus 289 ~~~ll~~~~~~g~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 364 (598)
+..+...+...|++++ |...|+.+.... |.+...+..+...+...|++++|...+++.....+. +...+..+..
T Consensus 249 ~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~ 326 (656)
T PRK15174 249 RRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYAR 326 (656)
T ss_pred HHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 6677777777777764 677777777653 446667777777777778888888887777765432 4555666677
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhC
Q 047932 365 GLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNS 420 (598)
Q Consensus 365 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 420 (598)
.+...|++++|...|+.+...+ +.+...+..+..++...|+.++|...|+++.+.
T Consensus 327 ~l~~~G~~~eA~~~l~~al~~~-P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 327 ALRQVGQYTAASDEFVQLAREK-GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 7777788888888877777653 222333444556677778888888888777654
No 23
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.90 E-value=2.5e-18 Score=181.55 Aligned_cols=414 Identities=12% Similarity=0.023 Sum_probs=272.1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhccHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhc
Q 047932 74 PVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRT 153 (598)
Q Consensus 74 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 153 (598)
++.-..-.+.+....|+.++|+++|.++.... +.....+..+...+...
T Consensus 14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-------------------------------~~~a~~~~~lA~~~~~~ 62 (765)
T PRK10049 14 SNNQIADWLQIALWAGQDAEVITVYNRYRVHM-------------------------------QLPARGYAAVAVAYRNL 62 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-------------------------------CCCHHHHHHHHHHHHHc
Confidence 44455555556666777777777777666321 23444567777777777
Q ss_pred CChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHH
Q 047932 154 GHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTYNSLIHCFSHADDWN 233 (598)
Q Consensus 154 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 233 (598)
|++++|..+|++..+.. |.+...+..++..+...|++++|+..++++.+.. +.+.. +..+..++...|+.+
T Consensus 63 g~~~~A~~~~~~al~~~-------P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~ 133 (765)
T PRK10049 63 KQWQNSLTLWQKALSLE-------PQNDDYQRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHW 133 (765)
T ss_pred CCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHH
Confidence 77777777777777654 4456666677777777777777777777777652 22445 666777777777777
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcCH------HHHHHHHHHHH-----hcCCH
Q 047932 234 EAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNT------FVYNTLMDGFC-----LTGRV 302 (598)
Q Consensus 234 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~ll~~~~-----~~g~~ 302 (598)
+|+..++++.+.. +.+...+..+..++...|..++|++.++.+.. .|+. .....++.... ..+++
T Consensus 134 ~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~ 209 (765)
T PRK10049 134 DELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERY 209 (765)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHH
Confidence 7777777777653 22444555566666677777777777765543 1111 01112222221 11223
Q ss_pred ---HHHHHHHHHHHHC-CCCCChh-hHH----HHHHHHHhcCCHHHHHHHHHHHccCCCC-CCHHHHHHHHHHHHhcCCH
Q 047932 303 ---NHAKELFVSMESN-GCMHDVV-SYT----TLINGYCKTKNVEEALNLYRKMLPKGIR-PTVVTYSTLFLGLFEVHQV 372 (598)
Q Consensus 303 ---~~a~~~~~~~~~~-~~~~~~~-~~~----~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~ 372 (598)
++|++.++.+.+. ...|+.. .+. ..+..+...|++++|+..|+.+...+.. |+. ....+...+...|++
T Consensus 210 ~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~ 288 (765)
T PRK10049 210 AIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQP 288 (765)
T ss_pred HHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCc
Confidence 6677777777753 1112111 111 1123445668888888888888876532 322 222346678888888
Q ss_pred HHHHHHHHHHhhCCCCc---CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCC-----------CCC---HHHHHHHHHH
Q 047932 373 EHALKLFDEMQHNDVAA---DTYIYNTFIDGLCKNGFVLEALELFCAIGNSKY-----------ELD---IISYSCLIDG 435 (598)
Q Consensus 373 ~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----------~~~---~~~~~~l~~~ 435 (598)
++|+.+|+++....... .......+..++...|++++|..+++.+..... .|+ ...+..+...
T Consensus 289 e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~ 368 (765)
T PRK10049 289 EKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQV 368 (765)
T ss_pred HHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHH
Confidence 88888888877643111 134455566677888888888888888875421 122 2345667788
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcccc
Q 047932 436 LCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFIRNNETSKS 515 (598)
Q Consensus 436 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 515 (598)
+...|++++|+++++++.... +.+...+..++..+...|++++|++.+++++... |.+...+...+..+...|++++|
T Consensus 369 l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~-Pd~~~l~~~~a~~al~~~~~~~A 446 (765)
T PRK10049 369 AKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVLE-PRNINLEVEQAWTALDLQEWRQM 446 (765)
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHhCCHHHH
Confidence 889999999999999988752 3357778888888999999999999999998864 44567777778888999999999
Q ss_pred chhHHHHHHHhcccCCCCCChHHHHH
Q 047932 516 SRGKLMSQMSSCWSMCFQPKTLICSI 541 (598)
Q Consensus 516 ~~~~~~~~~~~~~~~~~~p~~~~~~~ 541 (598)
.. +++++++. .|+......
T Consensus 447 ~~--~~~~ll~~-----~Pd~~~~~~ 465 (765)
T PRK10049 447 DV--LTDDVVAR-----EPQDPGVQR 465 (765)
T ss_pred HH--HHHHHHHh-----CCCCHHHHH
Confidence 99 99999865 677665555
No 24
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.89 E-value=3.6e-18 Score=176.44 Aligned_cols=200 Identities=12% Similarity=0.153 Sum_probs=124.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCC-----CCCCHHHHHHHHHHHH
Q 047932 363 FLGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSK-----YELDIISYSCLIDGLC 437 (598)
Q Consensus 363 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~l~~~~~ 437 (598)
+-++...+++.++++.|+.+...+.+....+-..+.++|...+++++|+.+|+.+.... ..++......|.-+|.
T Consensus 299 l~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~l 378 (822)
T PRK14574 299 LGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLN 378 (822)
T ss_pred HHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHH
Confidence 34455666777777777777766544445566666777777777777777777665432 1223333456666777
Q ss_pred HcCCHHHHHHHHHHHHhCCC-------------CCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 047932 438 KIGKLETAWELFQSLSRVGL-------------LPNVV-TYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIM 503 (598)
Q Consensus 438 ~~g~~~~A~~~~~~~~~~~~-------------~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 503 (598)
..+++++|..+++++.+... .||.. .+..++..+...|+..+|.+.++++.... |-|......+.
T Consensus 379 d~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A 457 (822)
T PRK14574 379 ESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALA 457 (822)
T ss_pred hcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 77777777777777665211 12211 22334555667777777777777776654 55667777777
Q ss_pred HHHHhcCCccccchhHHHHHHHhcccCCCCCChHHHHH----HHHHhCCCCCChhhHHHhhhcCccccchh
Q 047932 504 LGFIRNNETSKSSRGKLMSQMSSCWSMCFQPKTLICSI----SIMLQKDMSPGDTMFSTALLMDPDCSCDL 570 (598)
Q Consensus 504 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~----~~~~~~~~~~a~~~~~~~l~~~P~~~~~~ 570 (598)
..+...|++.+|.+ .++.+. .+.|+...... ..+..++..+|....+.+++..|+++...
T Consensus 458 ~v~~~Rg~p~~A~~--~~k~a~-----~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~~ 521 (822)
T PRK14574 458 SIYLARDLPRKAEQ--ELKAVE-----SLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIPSQ 521 (822)
T ss_pred HHHHhcCCHHHHHH--HHHHHh-----hhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhHH
Confidence 77777777777777 776665 34666544444 34445777777777777777777777543
No 25
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.88 E-value=2.6e-18 Score=169.59 Aligned_cols=393 Identities=12% Similarity=0.075 Sum_probs=243.3
Q ss_pred cHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcC----
Q 047932 120 RIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEG---- 195 (598)
Q Consensus 120 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---- 195 (598)
+++.|...|.+..+.+..--+..+--|+..|.+.|+++.+...|+...... |.+..+...|...|...+
T Consensus 322 d~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-------p~~~etm~iLG~Lya~~~~~~~ 394 (1018)
T KOG2002|consen 322 DFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-------PNNYETMKILGCLYAHSAKKQE 394 (1018)
T ss_pred cHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-------cchHHHHHHHHhHHHhhhhhhH
Confidence 444444444444433211111122234444555555555555555544443 333444444444444433
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----HCCCCCCHhhHHHHHHHHHhCCCHHHHH
Q 047932 196 FVDKAMELFLQMKDENINPNVVTYNSLIHCFSHADDWNEAKRLFIKMM----DQGVHPNVVTFSVIVDELCKNGKMEEAS 271 (598)
Q Consensus 196 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 271 (598)
..+.|..++....+.- +.|...|..+...+....-+.. +..|.... ..+..+.+...|.+...+...|++.+|.
T Consensus 395 ~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~ 472 (1018)
T KOG2002|consen 395 KRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKAL 472 (1018)
T ss_pred HHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHH
Confidence 2344444444444331 2244445444444433332222 44444332 2233445556666666666667777776
Q ss_pred HHHHHHHhc---CCCcC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 047932 272 RLLDLMIQI---GVHPN------TFVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALN 342 (598)
Q Consensus 272 ~~~~~~~~~---~~~~~------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 342 (598)
..|...... ...+| ..+-..+..+.-..++.+.|.+.|..+.+.. |.-+..|..++......++..+|..
T Consensus 473 ~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~ 551 (1018)
T KOG2002|consen 473 EHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASL 551 (1018)
T ss_pred HHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHH
Confidence 666666544 11111 2223334455555666677777777666652 2223334444433334567778888
Q ss_pred HHHHHccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC-CCCcCHHHHHHHHHHHHH------------cCCHHH
Q 047932 343 LYRKMLPKGIRPTVVTYSTLFLGLFEVHQVEHALKLFDEMQHN-DVAADTYIYNTFIDGLCK------------NGFVLE 409 (598)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~------------~g~~~~ 409 (598)
.++.....+- .++..++.+...+.....+..|.+-|..+.+. ...+|+++..+|.+.|.+ .+..++
T Consensus 552 ~lk~~l~~d~-~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~K 630 (1018)
T KOG2002|consen 552 LLKDALNIDS-SNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEK 630 (1018)
T ss_pred HHHHHHhccc-CCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHH
Confidence 8887766532 25566666777888888888888866666543 223677888888886653 346788
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047932 410 ALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEA 489 (598)
Q Consensus 410 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 489 (598)
|+++|.++++.. +.|.+.-+.+.-+++..|++.+|..+|.+..+... ....+|..+.++|..+|+|..|+++|+...+
T Consensus 631 Alq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lk 708 (1018)
T KOG2002|consen 631 ALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLK 708 (1018)
T ss_pred HHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999776 55888999999999999999999999999988632 3456789999999999999999999999887
Q ss_pred C-CCCCCHHHHHHHHHHHHhcCCccccchhHHHHHHHhc
Q 047932 490 K-GVEPDCVIFNTIMLGFIRNNETSKSSRGKLMSQMSSC 527 (598)
Q Consensus 490 ~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 527 (598)
. .-..+......|.+++.+.|.+.+|.+ .+..+...
T Consensus 709 kf~~~~~~~vl~~Lara~y~~~~~~eak~--~ll~a~~~ 745 (1018)
T KOG2002|consen 709 KFYKKNRSEVLHYLARAWYEAGKLQEAKE--ALLKARHL 745 (1018)
T ss_pred HhcccCCHHHHHHHHHHHHHhhhHHHHHH--HHHHHHHh
Confidence 6 334467888999999999999999999 88888755
No 26
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.88 E-value=2.1e-17 Score=170.85 Aligned_cols=437 Identities=12% Similarity=0.058 Sum_probs=298.0
Q ss_pred cccCCChHHHHHHHHHHHHcCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhccHHHHHHH
Q 047932 49 DINLITPNEALCIFDYMLRMHPSPPPV-SSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCRIMEAAAL 127 (598)
Q Consensus 49 ~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~a~~~ 127 (598)
..+.|+++.|+..|+++++.+|. ++ ..+ .++..+...|+.++|+..++++.. |+
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~~P~--~~~av~-dll~l~~~~G~~~~A~~~~eka~~----p~------------------ 98 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKAGPL--QSGQVD-DWLQIAGWAGRDQEVIDVYERYQS----SM------------------ 98 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhhCcc--chhhHH-HHHHHHHHcCCcHHHHHHHHHhcc----CC------------------
Confidence 35788999999999999888877 43 333 777778888888888888888772 21
Q ss_pred HHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047932 128 FTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQM 207 (598)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 207 (598)
+........++..|...|++++|+++|+++.+.. |.+...+..++..+...++.++|++.++.+
T Consensus 99 ---------n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~d-------P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l 162 (822)
T PRK14574 99 ---------NISSRGLASAARAYRNEKRWDQALALWQSSLKKD-------PTNPDLISGMIMTQADAGRGGVVLKQATEL 162 (822)
T ss_pred ---------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-------CCCHHHHHHHHHHHhhcCCHHHHHHHHHHh
Confidence 1123333444667777888888888888888875 555667777778888888888888888888
Q ss_pred hhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcCHH
Q 047932 208 KDENINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTF 287 (598)
Q Consensus 208 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 287 (598)
... .|+...+..++..+...++..+|++.++++.+.. +.+...+..+..++.+.|-...|.++..+-... +.+...
T Consensus 163 ~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~ 238 (822)
T PRK14574 163 AER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHY 238 (822)
T ss_pred ccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHH
Confidence 765 4454555444444444566656888888888763 335666677777888888887777666543221 111111
Q ss_pred H------HHHHHHHH---H--hcCC---HHHHHHHHHHHHHC-C-CCCChhhH----HHHHHHHHhcCCHHHHHHHHHHH
Q 047932 288 V------YNTLMDGF---C--LTGR---VNHAKELFVSMESN-G-CMHDVVSY----TTLINGYCKTKNVEEALNLYRKM 347 (598)
Q Consensus 288 ~------~~~ll~~~---~--~~g~---~~~a~~~~~~~~~~-~-~~~~~~~~----~~l~~~~~~~~~~~~A~~~~~~~ 347 (598)
. ...+++.- . ...+ .+.|+.-++.+... + .|+....| .-.+-++...+++.++++.|+.+
T Consensus 239 ~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l 318 (822)
T PRK14574 239 RQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAM 318 (822)
T ss_pred HHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHh
Confidence 0 01111100 0 1112 34455555555442 1 12222222 12345667788899999999999
Q ss_pred ccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC-----CCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCC
Q 047932 348 LPKGIRPTVVTYSTLFLGLFEVHQVEHALKLFDEMQHND-----VAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKY 422 (598)
Q Consensus 348 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 422 (598)
...+.+....+...+..+|...+++++|..+|..+.... .+++......|.-++...+++++|..+++.+.+...
T Consensus 319 ~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p 398 (822)
T PRK14574 319 EAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTP 398 (822)
T ss_pred hhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCC
Confidence 887765556677888889999999999999999886643 123444456788888899999999999998876321
Q ss_pred -------------CCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047932 423 -------------ELDI-ISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDME 488 (598)
Q Consensus 423 -------------~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 488 (598)
.||- .....++..+...|++.+|++.++++.... +-|......+...+...|.+.+|.+.++.+.
T Consensus 399 ~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~ 477 (822)
T PRK14574 399 YQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVE 477 (822)
T ss_pred cEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 1222 234556777888999999999999998763 3477888888889999999999999997777
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCccccchhHHHHHHHhcccCCCCCChHHH
Q 047932 489 AKGVEPDCVIFNTIMLGFIRNNETSKSSRGKLMSQMSSCWSMCFQPKTLIC 539 (598)
Q Consensus 489 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~ 539 (598)
... +.+..+....+.++...|++++|.. +++.+.+. .|+....
T Consensus 478 ~l~-P~~~~~~~~~~~~al~l~e~~~A~~--~~~~l~~~-----~Pe~~~~ 520 (822)
T PRK14574 478 SLA-PRSLILERAQAETAMALQEWHQMEL--LTDDVISR-----SPEDIPS 520 (822)
T ss_pred hhC-CccHHHHHHHHHHHHhhhhHHHHHH--HHHHHHhh-----CCCchhH
Confidence 653 4456777788888899999999999 99888855 5655443
No 27
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.85 E-value=3.1e-15 Score=141.58 Aligned_cols=434 Identities=12% Similarity=0.033 Sum_probs=203.1
Q ss_pred cHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHH
Q 047932 120 RIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDK 199 (598)
Q Consensus 120 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 199 (598)
.++.|..++++..+. ++.+..+|.+-...--.+|+.+...+++++....-..-| +..+...|..=...|-+.|..-.
T Consensus 421 tYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ng--v~i~rdqWl~eAe~~e~agsv~T 497 (913)
T KOG0495|consen 421 TYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANG--VEINRDQWLKEAEACEDAGSVIT 497 (913)
T ss_pred HHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcc--eeecHHHHHHHHHHHhhcCChhh
Confidence 444444444444432 233444444444444444444444444443221100000 23334444444444444444444
Q ss_pred HHHHHHHHhhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHH
Q 047932 200 AMELFLQMKDENINP--NVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLM 277 (598)
Q Consensus 200 A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 277 (598)
+..+.......|+.- -..+|..-...|.+.+.++-|..+|...++. .+-+...|......--..|..++...+|+++
T Consensus 498 cQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqka 576 (913)
T KOG0495|consen 498 CQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKA 576 (913)
T ss_pred HHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 444444444433321 1224444444444555555555555544443 2223334443333333444455555555555
Q ss_pred HhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHH
Q 047932 278 IQIGVHPNTFVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVV 357 (598)
Q Consensus 278 ~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 357 (598)
... .+-....|......+-..|+...|..++..+.+.. +.+...|.+-+.....+.+++.|..+|.+.... .|+..
T Consensus 577 v~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeR 652 (913)
T KOG0495|consen 577 VEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTER 652 (913)
T ss_pred HHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcch
Confidence 443 12223333333444444555555555555554443 224444555555555555555555555555443 23344
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 047932 358 TYSTLFLGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLC 437 (598)
Q Consensus 358 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 437 (598)
.|.--+...-..++.++|.+++++.++. .+.-...|..+.+.+-+.++.+.|...|..-.+. ++-.+..|..|...--
T Consensus 653 v~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleE 730 (913)
T KOG0495|consen 653 VWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEE 730 (913)
T ss_pred hhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHH
Confidence 4433333334445555555555555543 1222444445555555555555555555444432 2333444555555555
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccccch
Q 047932 438 KIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFIRNNETSKSSR 517 (598)
Q Consensus 438 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 517 (598)
+.|.+-.|..++++..-.+. .+...|...|+.-.+.|+.+.|..++.++++. .+-+...|..-|...-+.++..++..
T Consensus 731 k~~~~~rAR~ildrarlkNP-k~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~D 808 (913)
T KOG0495|consen 731 KDGQLVRARSILDRARLKNP-KNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSID 808 (913)
T ss_pred HhcchhhHHHHHHHHHhcCC-CcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHH
Confidence 55555555555555544322 24445555555555555555555555555543 23344444444444444443222222
Q ss_pred hHHHHHHHhcccCCCCCChHHHHH---HHHHhCCCCCChhhHHHhhhcCccccchhhHhhh
Q 047932 518 GKLMSQMSSCWSMCFQPKTLICSI---SIMLQKDMSPGDTMFSTALLMDPDCSCDLESLIH 575 (598)
Q Consensus 518 ~~~~~~~~~~~~~~~~p~~~~~~~---~~~~~~~~~~a~~~~~~~l~~~P~~~~~~~~l~~ 575 (598)
.+++- .-|+..... +++...++++|++-|++++.++|++.+++..++.
T Consensus 809 --ALkkc--------e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fyk 859 (913)
T KOG0495|consen 809 --ALKKC--------EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYK 859 (913)
T ss_pred --HHHhc--------cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHH
Confidence 22111 222222222 5667788888999999999999999988766644
No 28
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.84 E-value=7.1e-16 Score=140.44 Aligned_cols=460 Identities=12% Similarity=0.099 Sum_probs=348.9
Q ss_pred CCcccccCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhc----c
Q 047932 45 SGQGDINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINC----R 120 (598)
Q Consensus 45 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~----~ 120 (598)
|+++-..++++..|..+|++++..+-. +...|...+..-.++.....|+.++++++..-...|..-|..+.-. +
T Consensus 79 YaqwEesq~e~~RARSv~ERALdvd~r--~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgN 156 (677)
T KOG1915|consen 79 YAQWEESQKEIQRARSVFERALDVDYR--NITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGN 156 (677)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHhcccc--cchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcc
Confidence 566667899999999999999988754 8899999999999999999999999999987444444444444333 9
Q ss_pred HHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHH
Q 047932 121 IMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKA 200 (598)
Q Consensus 121 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 200 (598)
+..|+++|++-... .|+...|++.|..=.+....+.|..++++.+- +.|++.+|-.....-.+.|+...|
T Consensus 157 i~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~--------~HP~v~~wikyarFE~k~g~~~~a 226 (677)
T KOG1915|consen 157 IAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVL--------VHPKVSNWIKYARFEEKHGNVALA 226 (677)
T ss_pred cHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--------ecccHHHHHHHHHHHHhcCcHHHH
Confidence 99999999999876 89999999999999999999999999999987 569999999999999999999999
Q ss_pred HHHHHHHhhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HhhHHHHHHHHHhCCCHHHHHHH---
Q 047932 201 MELFLQMKDE-NI-NPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPN--VVTFSVIVDELCKNGKMEEASRL--- 273 (598)
Q Consensus 201 ~~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~--- 273 (598)
..+|+...+. |- ..+...++++...-..+..++.|.-+|+-.+.. ++.+ ...|..+...--+-|+.......
T Consensus 227 R~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~ 305 (677)
T KOG1915|consen 227 RSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVG 305 (677)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhh
Confidence 9999988764 11 112335556666666788899999999988876 3333 34555555444456665443332
Q ss_pred -----HHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh--hhHHHHHHH--------HHhcCCHH
Q 047932 274 -----LDLMIQIGVHPNTFVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDV--VSYTTLING--------YCKTKNVE 338 (598)
Q Consensus 274 -----~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~--------~~~~~~~~ 338 (598)
++.++..+ +-|-.+|-..+..-...|+.+...++|+.....- ||-. ..|...|-. -....+.+
T Consensus 306 KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanv-pp~~ekr~W~RYIYLWinYalyeEle~ed~e 383 (677)
T KOG1915|consen 306 KRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANV-PPASEKRYWRRYIYLWINYALYEELEAEDVE 383 (677)
T ss_pred hhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 34444443 4467788888888888999999999999998763 4421 223222221 13467899
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHH----HhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHH
Q 047932 339 EALNLYRKMLPKGIRPTVVTYSTLFLGL----FEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELF 414 (598)
Q Consensus 339 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 414 (598)
.+.++++..++. ++-...||..+--.| .++.+...|.+++..++.. .|-..+|...|..-.+.++++.+..++
T Consensus 384 rtr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~--cPK~KlFk~YIelElqL~efDRcRkLY 460 (677)
T KOG1915|consen 384 RTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGK--CPKDKLFKGYIELELQLREFDRCRKLY 460 (677)
T ss_pred HHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhcc--CCchhHHHHHHHHHHHHhhHHHHHHHH
Confidence 999999988874 333556666554444 4678999999999888754 678889999999999999999999999
Q ss_pred HHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 047932 415 CAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVG-LLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEAKGVE 493 (598)
Q Consensus 415 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 493 (598)
++.+.-+ +-+..+|......-...|+.+.|..+|+-+++.. +......|.+.|..-...|.++.|..+|+++++..
T Consensus 461 Ekfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt-- 537 (677)
T KOG1915|consen 461 EKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT-- 537 (677)
T ss_pred HHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc--
Confidence 9999876 4588899999999999999999999999988742 11124567777887789999999999999999863
Q ss_pred CCHHHHHHHHHHHH-----hcC-----------CccccchhHHHHHHHhc
Q 047932 494 PDCVIFNTIMLGFI-----RNN-----------ETSKSSRGKLMSQMSSC 527 (598)
Q Consensus 494 p~~~~~~~l~~~~~-----~~g-----------~~~~A~~~~~~~~~~~~ 527 (598)
+....|.+...--. +.| ....|.. +|+.+...
T Consensus 538 ~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~--iferAn~~ 585 (677)
T KOG1915|consen 538 QHVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARK--IFERANTY 585 (677)
T ss_pred ccchHHHhHHHHhccccccccccchhhhhcchhHHHHHHH--HHHHHHHH
Confidence 44456666654322 233 3345666 77776544
No 29
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.83 E-value=1.8e-15 Score=148.81 Aligned_cols=504 Identities=13% Similarity=0.102 Sum_probs=309.5
Q ss_pred ccCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH-hHHHHHhc-----cHHH
Q 047932 50 INLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLY-THSILINC-----RIME 123 (598)
Q Consensus 50 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~ll~~-----~~~~ 123 (598)
.-.|++++|.+++.++++..|. ++.+|.++...|-++|+.+++...+-.+... .|... .|..+-.. +++.
T Consensus 150 farg~~eeA~~i~~EvIkqdp~--~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL--~p~d~e~W~~ladls~~~~~i~q 225 (895)
T KOG2076|consen 150 FARGDLEEAEEILMEVIKQDPR--NPIAYYTLGEIYEQRGDIEKALNFWLLAAHL--NPKDYELWKRLADLSEQLGNINQ 225 (895)
T ss_pred HHhCCHHHHHHHHHHHHHhCcc--chhhHHHHHHHHHHcccHHHHHHHHHHHHhc--CCCChHHHHHHHHHHHhcccHHH
Confidence 3459999999999999999987 8999999999999999999999888776654 34433 33332222 7999
Q ss_pred HHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHH----HHHHHHHHhcCCHHH
Q 047932 124 AAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTY----NTIIDGVCKEGFVDK 199 (598)
Q Consensus 124 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~----~~li~~~~~~g~~~~ 199 (598)
|+-.|.++++.++ ++...+-.-...|-+.|+...|...|.++....+ +.|..-. ..++..+...++-+.
T Consensus 226 A~~cy~rAI~~~p-~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p------~~d~er~~d~i~~~~~~~~~~~~~e~ 298 (895)
T KOG2076|consen 226 ARYCYSRAIQANP-SNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP------PVDIERIEDLIRRVAHYFITHNERER 298 (895)
T ss_pred HHHHHHHHHhcCC-cchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC------chhHHHHHHHHHHHHHHHHHhhHHHH
Confidence 9999999998853 3555555567889999999999999999998761 2222222 334566777788899
Q ss_pred HHHHHHHHhhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---------------------------CCCCH
Q 047932 200 AMELFLQMKDE-NINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQG---------------------------VHPNV 251 (598)
Q Consensus 200 A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------------------------~~~~~ 251 (598)
|.+.++..... +-..+...++.++..+.+...++.+......+.... ..++.
T Consensus 299 a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l 378 (895)
T KOG2076|consen 299 AAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDL 378 (895)
T ss_pred HHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccc
Confidence 99988887763 223356678888888999999999888887776511 11111
Q ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 047932 252 VTFSVIVDELCKNGKMEEASRLLDLMIQIG--VHPNTFVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLIN 329 (598)
Q Consensus 252 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 329 (598)
..+ .++-++......+....+...+.+.. +.-+...|..+..++.+.|++..|+.+|..+.....-.+...|-.+..
T Consensus 379 ~v~-rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~ 457 (895)
T KOG2076|consen 379 RVI-RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLAR 457 (895)
T ss_pred hhH-hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHH
Confidence 221 12223334444444444444444443 233455666777777777777777777777776644445666777777
Q ss_pred HHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC--------CCCcCHHHHHHHHHHH
Q 047932 330 GYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFEVHQVEHALKLFDEMQHN--------DVAADTYIYNTFIDGL 401 (598)
Q Consensus 330 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~~l~~~~ 401 (598)
+|...|.+++|.+.|+.+....+. +...-..|...+.+.|+.++|.+.+..+... ...|+..........+
T Consensus 458 c~~~l~e~e~A~e~y~kvl~~~p~-~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l 536 (895)
T KOG2076|consen 458 CYMELGEYEEAIEFYEKVLILAPD-NLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDIL 536 (895)
T ss_pred HHHHHhhHHHHHHHHHHHHhcCCC-chhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHH
Confidence 777777777777777777665222 3344455556666777777777777664321 2333444444444455
Q ss_pred HHcCCHHHHHHHHHHHhhC-------------------------------------------------------------
Q 047932 402 CKNGFVLEALELFCAIGNS------------------------------------------------------------- 420 (598)
Q Consensus 402 ~~~g~~~~A~~~~~~~~~~------------------------------------------------------------- 420 (598)
.+.|+.++-...-..++..
T Consensus 537 ~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e 616 (895)
T KOG2076|consen 537 FQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVE 616 (895)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhh
Confidence 5555555433222222100
Q ss_pred --CCCCC-H-HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC--CCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHC-
Q 047932 421 --KYELD-I-ISYSCLIDGLCKIGKLETAWELFQSLSRVGL--LPNV---VTYNIMIHGLCNDGQMDKAHDLFLDMEAK- 490 (598)
Q Consensus 421 --~~~~~-~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~- 490 (598)
+...+ . ..+..++.++.+.+++.+|..+...+..... .++. ..-+..+.+.+..+++..|...++.|...
T Consensus 617 ~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~ 696 (895)
T KOG2076|consen 617 LRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQF 696 (895)
T ss_pred hccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 00000 0 1234556667777788888777777665321 1111 11233445566778888888888777754
Q ss_pred CC--CC-CHHHHHHHHHHHHhcCCccccchhHHHHHHHhcccCCCCCChHHHHHHHHHhCCCCCChhhHHHhhhcCcccc
Q 047932 491 GV--EP-DCVIFNTIMLGFIRNNETSKSSRGKLMSQMSSCWSMCFQPKTLICSISIMLQKDMSPGDTMFSTALLMDPDCS 567 (598)
Q Consensus 491 ~~--~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~l~~~P~~~ 567 (598)
+. .| -...|+.......+.|+-.--.+ ++..+...++.+..|-...+.......+.+..|...+-++....|++|
T Consensus 697 ~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R--~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~P 774 (895)
T KOG2076|consen 697 QFYLDVYQLNLWNLDFSYFSKYGQRVCYLR--LIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSP 774 (895)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCc
Confidence 11 11 12334444445555554333333 444443331111122222233355556777888888888888888887
Q ss_pred c
Q 047932 568 C 568 (598)
Q Consensus 568 ~ 568 (598)
-
T Consensus 775 l 775 (895)
T KOG2076|consen 775 L 775 (895)
T ss_pred H
Confidence 6
No 30
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.82 E-value=1.3e-16 Score=144.48 Aligned_cols=416 Identities=17% Similarity=0.135 Sum_probs=207.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhc------cHHHHHHHHHHHHHcCCCC----CHhhHHHH
Q 047932 77 SFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINC------RIMEAAALFTKLRVFGCEP----DVFTYNTL 146 (598)
Q Consensus 77 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~------~~~~a~~~~~~~~~~~~~~----~~~~~~~l 146 (598)
....+.+-|..+..+.+|+..|+-..+....|+.-.+..-+.. .+..|++.|+-.+..-+.. .....+.+
T Consensus 203 vl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~ni 282 (840)
T KOG2003|consen 203 VLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNI 282 (840)
T ss_pred HHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhc
Confidence 3445566666777788899999888888777776554433333 6778888888766541111 12346666
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-----------
Q 047932 147 INGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPN----------- 215 (598)
Q Consensus 147 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~----------- 215 (598)
...+.+.|+++.|+..|+.+.+.. |+..+-..|+-++..-|+.++..+.|..|......+|
T Consensus 283 gvtfiq~gqy~dainsfdh~m~~~--------pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp 354 (840)
T KOG2003|consen 283 GVTFIQAGQYDDAINSFDHCMEEA--------PNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDP 354 (840)
T ss_pred CeeEEecccchhhHhhHHHHHHhC--------ccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCc
Confidence 677888899999999999888754 6666555566666677888888888888875422222
Q ss_pred -HHHHHHH-----HHHHHhcC--CHHHHHHHHHHHHHCCCCCC---------------------HhhHHHHHHHHHhCCC
Q 047932 216 -VVTYNSL-----IHCFSHAD--DWNEAKRLFIKMMDQGVHPN---------------------VVTFSVIVDELCKNGK 266 (598)
Q Consensus 216 -~~~~~~l-----~~~~~~~~--~~~~a~~~~~~~~~~~~~~~---------------------~~~~~~l~~~~~~~g~ 266 (598)
....+.- +.-.-+.+ +.++++-.--+++.--+.|+ ...=..-...+.+.|+
T Consensus 355 ~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d 434 (840)
T KOG2003|consen 355 DDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGD 434 (840)
T ss_pred chHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccC
Confidence 1111111 11111111 11111111111111001110 0000112234567777
Q ss_pred HHHHHHHHHHHHhcCCCcCHHHHHHHHHHH------------------------------------HhcCCHHHHHHHHH
Q 047932 267 MEEASRLLDLMIQIGVHPNTFVYNTLMDGF------------------------------------CLTGRVNHAKELFV 310 (598)
Q Consensus 267 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~------------------------------------~~~g~~~~a~~~~~ 310 (598)
++.|+++++-..+.+-+.-...-+.|...+ ...|++++|.+.|+
T Consensus 435 ~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~yk 514 (840)
T KOG2003|consen 435 IEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYK 514 (840)
T ss_pred HHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHH
Confidence 777777776665543222222222222222 22344555555555
Q ss_pred HHHHCCCCCChhhHHHH---HHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 047932 311 SMESNGCMHDVVSYTTL---INGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFEVHQVEHALKLFDEMQHNDV 387 (598)
Q Consensus 311 ~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 387 (598)
+.+.. |..+-.+| .-.+-..|+.++|++.|-++... ...+..++..+...|....+..+|++++.+.... +
T Consensus 515 eal~n----dasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-i 588 (840)
T KOG2003|consen 515 EALNN----DASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-I 588 (840)
T ss_pred HHHcC----chHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-C
Confidence 55443 22211111 22233445555555555443321 1113344444444455555555555555444433 3
Q ss_pred CcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 047932 388 AADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIM 467 (598)
Q Consensus 388 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 467 (598)
+.|+.+...+...|-+.|+-..|.+.+-.--.. ++.+..+...|...|....-+++++.+|++..- +.|+..-|..+
T Consensus 589 p~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlm 665 (840)
T KOG2003|consen 589 PNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLM 665 (840)
T ss_pred CCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHH
Confidence 444555555555555555555555443332211 234445555555555555555555555555433 34555555554
Q ss_pred HHHHH-hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 047932 468 IHGLC-NDGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFIRNN 510 (598)
Q Consensus 468 ~~~~~-~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 510 (598)
+..|. +.|++++|..+|+....+ ++.|......|++.+...|
T Consensus 666 iasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlg 708 (840)
T KOG2003|consen 666 IASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLG 708 (840)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhcccc
Confidence 44333 445555555555554432 3445555555555554444
No 31
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.81 E-value=5.5e-14 Score=133.33 Aligned_cols=486 Identities=12% Similarity=0.067 Sum_probs=378.8
Q ss_pred ChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHH--Hhc---cHHHHHHHH
Q 047932 54 TPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSIL--INC---RIMEAAALF 128 (598)
Q Consensus 54 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l--l~~---~~~~a~~~~ 128 (598)
+.++|+.++.++.+--|. +...|..+.+. .-|+.|..++.++.+. +.-+...|.+. +.. +.+...++.
T Consensus 391 ~~~darilL~rAveccp~--s~dLwlAlarL----etYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii 463 (913)
T KOG0495|consen 391 EPEDARILLERAVECCPQ--SMDLWLALARL----ETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKII 463 (913)
T ss_pred ChHHHHHHHHHHHHhccc--hHHHHHHHHHH----HHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHH
Confidence 456688888888776665 77777665544 5588888888887764 33333344322 221 444444444
Q ss_pred HH----HHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHH
Q 047932 129 TK----LRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELF 204 (598)
Q Consensus 129 ~~----~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 204 (598)
.+ +...|+..+...|..=...|-+.|..-.+..+.......+.+ -..-..||..-...|.+.+.++-|..+|
T Consensus 464 ~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvE----eed~~~tw~~da~~~~k~~~~~carAVy 539 (913)
T KOG0495|consen 464 DRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVE----EEDRKSTWLDDAQSCEKRPAIECARAVY 539 (913)
T ss_pred HHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccc----cchhHhHHhhhHHHHHhcchHHHHHHHH
Confidence 43 334577888888888888999999998888888888776621 1223568999999999999999999999
Q ss_pred HHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCc
Q 047932 205 LQMKDENINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHP 284 (598)
Q Consensus 205 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 284 (598)
...++. .+-+...|......--..|..+....+|++.... ++-....|......+...|++..|..++..+.+....
T Consensus 540 a~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn- 616 (913)
T KOG0495|consen 540 AHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN- 616 (913)
T ss_pred HHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-
Confidence 999885 3336677877777777789999999999999887 4446667777888888999999999999999987533
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCC-HHHHHHHH
Q 047932 285 NTFVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPT-VVTYSTLF 363 (598)
Q Consensus 285 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~ 363 (598)
+...|.+.+.......+++.|..+|.+.... .++...|.--+...--.++.++|++++++..+. -|+ ...|..+.
T Consensus 617 seeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlG 692 (913)
T KOG0495|consen 617 SEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLG 692 (913)
T ss_pred cHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHh
Confidence 6778888889999999999999999999876 567778877777777789999999999998876 344 45677888
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHH
Q 047932 364 LGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLE 443 (598)
Q Consensus 364 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 443 (598)
+.+-+.++.+.|...|..-.+. ++..+..|..+...--+.|.+-.|..++++..-.+ +.+...|...+++-.+.|..+
T Consensus 693 Qi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~ 770 (913)
T KOG0495|consen 693 QIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKE 770 (913)
T ss_pred HHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHH
Confidence 8899999999999999887765 46677888888888889999999999999998766 558889999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccccchhHHHHH
Q 047932 444 TAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFIRNNETSKSSRGKLMSQ 523 (598)
Q Consensus 444 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 523 (598)
.|..+..+.++. .+.+...|..-|....+.++-......+++. .-|++....+...+....++++|.+ +|.+
T Consensus 771 ~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkkc-----e~dphVllaia~lfw~e~k~~kar~--Wf~R 842 (913)
T KOG0495|consen 771 QAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKKC-----EHDPHVLLAIAKLFWSEKKIEKARE--WFER 842 (913)
T ss_pred HHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHhc-----cCCchhHHHHHHHHHHHHHHHHHHH--HHHH
Confidence 999999998875 3445677777777777777755555555443 4588888899999999999999999 9999
Q ss_pred HHhcccCCCCCChH-HHHH---HHHHhCCCCCChhhHHHhhhcCccccchhhH
Q 047932 524 MSSCWSMCFQPKTL-ICSI---SIMLQKDMSPGDTMFSTALLMDPDCSCDLES 572 (598)
Q Consensus 524 ~~~~~~~~~~p~~~-~~~~---~~~~~~~~~~a~~~~~~~l~~~P~~~~~~~~ 572 (598)
..+. .||.- +|.. ....+|..+.-.+++.+...-.|.+..-+-.
T Consensus 843 avk~-----d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W~a 890 (913)
T KOG0495|consen 843 AVKK-----DPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELWQA 890 (913)
T ss_pred HHcc-----CCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHHH
Confidence 9965 56543 3333 4455788888899999999999998885543
No 32
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.80 E-value=4.4e-14 Score=129.00 Aligned_cols=453 Identities=10% Similarity=0.100 Sum_probs=339.8
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhc-----cHHHHHHHHHHHHH
Q 047932 59 LCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINC-----RIMEAAALFTKLRV 133 (598)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~-----~~~~a~~~~~~~~~ 133 (598)
.+-|+..++.+- -+...|...++.-..++++..|+++|++++... ..+...|...+.. .+..|+.++++.+.
T Consensus 59 RkefEd~irrnR--~~~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt 135 (677)
T KOG1915|consen 59 RKEFEDQIRRNR--LNMQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVT 135 (677)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHH
Confidence 344555554443 377889999998889999999999999999764 4444455555444 88899999999887
Q ss_pred cCCCCCH-hhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 047932 134 FGCEPDV-FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENI 212 (598)
Q Consensus 134 ~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 212 (598)
. -|-+ ..|-..+..=-..|+...|.++|++... ..|+...|++.|..-.+.+.++.|..++++..-.
T Consensus 136 ~--lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~--------w~P~eqaW~sfI~fElRykeieraR~IYerfV~~-- 203 (677)
T KOG1915|consen 136 I--LPRVDQLWYKYIYMEEMLGNIAGARQIFERWME--------WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV-- 203 (677)
T ss_pred h--cchHHHHHHHHHHHHHHhcccHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--
Confidence 5 2333 3466666666778999999999999988 4699999999999999999999999999999874
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcC--HH
Q 047932 213 NPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHP---NVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPN--TF 287 (598)
Q Consensus 213 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~ 287 (598)
.|++.+|--..+.-.+.|....+..+|+...+. +.. +...+.+....-.++..++.|.-+|+-.+..- +.+ ..
T Consensus 204 HP~v~~wikyarFE~k~g~~~~aR~VyerAie~-~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raee 281 (677)
T KOG1915|consen 204 HPKVSNWIKYARFEEKHGNVALARSVYERAIEF-LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEE 281 (677)
T ss_pred cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHH
Confidence 589999999999999999999999999988764 111 12234444444456778899999999888762 223 34
Q ss_pred HHHHHHHHHHhcCCHHHHHHH--------HHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCH--H
Q 047932 288 VYNTLMDGFCLTGRVNHAKEL--------FVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTV--V 357 (598)
Q Consensus 288 ~~~~ll~~~~~~g~~~~a~~~--------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~ 357 (598)
.|..+...--+-|+....... ++.+.+.+ +.|-.+|--.+..-...|+.+...++|++++.. ++|-. .
T Consensus 282 L~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr 359 (677)
T KOG1915|consen 282 LYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKR 359 (677)
T ss_pred HHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHH
Confidence 555555555555664443332 34445443 668888888888888899999999999999876 44421 1
Q ss_pred HHHHHHH-----HH---HhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHH----HHcCCHHHHHHHHHHHhhCCCCCC
Q 047932 358 TYSTLFL-----GL---FEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGL----CKNGFVLEALELFCAIGNSKYELD 425 (598)
Q Consensus 358 ~~~~l~~-----~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~g~~~~A~~~~~~~~~~~~~~~ 425 (598)
.|...|- ++ ....+.+.+.++|+..++. +|....+|.-+--.| .++.++..|.+++..++.. -|.
T Consensus 360 ~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~--cPK 436 (677)
T KOG1915|consen 360 YWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGK--CPK 436 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhcc--CCc
Confidence 1221111 11 2578999999999999884 555666666554444 5778999999999988744 678
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHH
Q 047932 426 IISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEAKG-VEPDCVIFNTIML 504 (598)
Q Consensus 426 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~l~~ 504 (598)
..+|...|..-.+.+.++.+..++++.++.++ -+..+|......-...|+.+.|..+|.-+++.. +..-...|...+.
T Consensus 437 ~KlFk~YIelElqL~efDRcRkLYEkfle~~P-e~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYId 515 (677)
T KOG1915|consen 437 DKLFKGYIELELQLREFDRCRKLYEKFLEFSP-ENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYID 515 (677)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHHhcCh-HhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhh
Confidence 88999999999999999999999999999643 367888888888888999999999999998753 1222345666666
Q ss_pred HHHhcCCccccchhHHHHHHHhcccCCCCCChHHHHH
Q 047932 505 GFIRNNETSKSSRGKLMSQMSSCWSMCFQPKTLICSI 541 (598)
Q Consensus 505 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~ 541 (598)
--...|.+++|.. +++++++. .+...+|..
T Consensus 516 FEi~~~E~ekaR~--LYerlL~r-----t~h~kvWis 545 (677)
T KOG1915|consen 516 FEIEEGEFEKARA--LYERLLDR-----TQHVKVWIS 545 (677)
T ss_pred hhhhcchHHHHHH--HHHHHHHh-----cccchHHHh
Confidence 6678999999999 99999966 455556655
No 33
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.76 E-value=1.2e-13 Score=124.50 Aligned_cols=405 Identities=16% Similarity=0.250 Sum_probs=232.5
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhc-------c-HHHHHHHHHHHHHcC----------
Q 047932 74 PVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINC-------R-IMEAAALFTKLRVFG---------- 135 (598)
Q Consensus 74 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~-------~-~~~a~~~~~~~~~~~---------- 135 (598)
.++.-+.++. +..+|...++.-+|++|.+.|....+..-..++.. + +-.-.+.|-.|...|
T Consensus 115 ~V~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G 193 (625)
T KOG4422|consen 115 QVETENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSG 193 (625)
T ss_pred hhcchhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccc
Confidence 3444555555 35678899999999999988876655544444432 0 000111111221111
Q ss_pred ---------CCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHH
Q 047932 136 ---------CEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQ 206 (598)
Q Consensus 136 ---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 206 (598)
.+.+..++..+|.++|+--+.+.|.+++++..... .+.+..+||.+|.+-.-. ...+++.+
T Consensus 194 ~vAdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k------~kv~~~aFN~lI~~~S~~----~~K~Lv~E 263 (625)
T KOG4422|consen 194 AVADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAK------GKVYREAFNGLIGASSYS----VGKKLVAE 263 (625)
T ss_pred cHHHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhh------heeeHHhhhhhhhHHHhh----ccHHHHHH
Confidence 12345667777777777777777777777776655 466777777777654322 22667777
Q ss_pred HhhCCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHH-HHHHHHHHHhc-
Q 047932 207 MKDENINPNVVTYNSLIHCFSHADDWNE----AKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEE-ASRLLDLMIQI- 280 (598)
Q Consensus 207 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~- 280 (598)
|....+.||..|+|+++.+..+.|+++. |.+++.+|++.|+.|...+|..++..+++.++..+ +..++.++...
T Consensus 264 Misqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~l 343 (625)
T KOG4422|consen 264 MISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSL 343 (625)
T ss_pred HHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhh
Confidence 7777777777778877777777776654 34566677777777777777777777777666533 44444444332
Q ss_pred -C--C----CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCC---hhhHHHHHHHHHhcCCHHHHHHHHHH
Q 047932 281 -G--V----HPNTFVYNTLMDGFCLTGRVNHAKELFVSMESNG----CMHD---VVSYTTLINGYCKTKNVEEALNLYRK 346 (598)
Q Consensus 281 -~--~----~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~ 346 (598)
| + +.|...|...+..|.+..+.+.|.++..-+.... ++++ ..-|..+....|+....+.-...|+.
T Consensus 344 tGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~ 423 (625)
T KOG4422|consen 344 TGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYED 423 (625)
T ss_pred ccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1 2244456666667777777777776665443221 1222 22344555666667777777777777
Q ss_pred HccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcC-CH--------H----H-HHH
Q 047932 347 MLPKGIRPTVVTYSTLFLGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNG-FV--------L----E-ALE 412 (598)
Q Consensus 347 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~--------~----~-A~~ 412 (598)
|...-.-|+..+...++++..-.+.++-..+++..++..|..........++..+++.. +. . + |..
T Consensus 424 lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad 503 (625)
T KOG4422|consen 424 LVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAAD 503 (625)
T ss_pred hccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHH
Confidence 77766667777777777777777777777777777766553333333333333333222 00 0 0 111
Q ss_pred HHH-------HHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC----CCHHHHHHHHHHHHhcCCHHHHH
Q 047932 413 LFC-------AIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLL----PNVVTYNIMIHGLCNDGQMDKAH 481 (598)
Q Consensus 413 ~~~-------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----p~~~~~~~l~~~~~~~g~~~~A~ 481 (598)
+++ ++.+. .......+.++..+.+.|+.++|.+++..+.+.+-+ |......-++....+.++...|+
T Consensus 504 ~~e~~e~~~~R~r~~--~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~ 581 (625)
T KOG4422|consen 504 IKEAYESQPIRQRAQ--DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAI 581 (625)
T ss_pred HHHHHHhhHHHHHhc--cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHH
Confidence 111 11111 233445556666666667777777766666443211 22222334444555566666666
Q ss_pred HHHHHHHHCC
Q 047932 482 DLFLDMEAKG 491 (598)
Q Consensus 482 ~~~~~~~~~~ 491 (598)
.+++-|...+
T Consensus 582 ~~lQ~a~~~n 591 (625)
T KOG4422|consen 582 EVLQLASAFN 591 (625)
T ss_pred HHHHHHHHcC
Confidence 6666665443
No 34
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.74 E-value=7.2e-13 Score=119.69 Aligned_cols=405 Identities=16% Similarity=0.167 Sum_probs=268.2
Q ss_pred HHHHhc-cHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCC--hhHH-HHHHHHHHhcCCCCcc-------------c
Q 047932 114 SILINC-RIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGH--TIVA-LNLFEEMANGNGEFGV-------------V 176 (598)
Q Consensus 114 ~~ll~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A-~~~~~~~~~~~~~~~~-------------~ 176 (598)
..+|+. .+.++.-+|+.|.+.|.+.+...-..|+..-+-.+. +.-| .+-|-.|...+...+. .
T Consensus 123 ~kmIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL~~E~ 202 (625)
T KOG4422|consen 123 LKMISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADLLFET 202 (625)
T ss_pred HHHHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHHHHHhh
Confidence 334444 677888899999998877777666666554443322 2211 2222233332211110 1
Q ss_pred cCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHH
Q 047932 177 CKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSV 256 (598)
Q Consensus 177 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 256 (598)
.|....++.++|.++|+-...++|.+++++......+.+..+||.+|.+-.-..+ .+++.+|....+.||..|+|.
T Consensus 203 ~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfNa 278 (625)
T KOG4422|consen 203 LPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFNA 278 (625)
T ss_pred cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHHH
Confidence 3456788999999999999999999999999888778899999999876543333 788889999889999999999
Q ss_pred HHHHHHhCCCHHH----HHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHC----CC----CCChhh
Q 047932 257 IVDELCKNGKMEE----ASRLLDLMIQIGVHPNTFVYNTLMDGFCLTGRVNH-AKELFVSMESN----GC----MHDVVS 323 (598)
Q Consensus 257 l~~~~~~~g~~~~----a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~-a~~~~~~~~~~----~~----~~~~~~ 323 (598)
++.+..+.|+++. |.+++.+|++.|+.|...+|..++..+.+.++..+ +..++.++... .+ +.|...
T Consensus 279 lL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~F 358 (625)
T KOG4422|consen 279 LLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKF 358 (625)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHH
Confidence 9999999998765 56788899999999999999999999988887654 44455554432 22 224455
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHccCC----CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHH
Q 047932 324 YTTLINGYCKTKNVEEALNLYRKMLPKG----IRPT---VVTYSTLFLGLFEVHQVEHALKLFDEMQHNDVAADTYIYNT 396 (598)
Q Consensus 324 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 396 (598)
|..-+..|.+..+.+-|.++..-..... +.|+ ..-|..+....+.....+....+|+.|+-.-.-|+..+...
T Consensus 359 F~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~ 438 (625)
T KOG4422|consen 359 FQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIH 438 (625)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHH
Confidence 6667788888888888887766554321 2222 23456677777888888999999999988777788888888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcC-C---H-----------------HHHHHHHHHHHhC
Q 047932 397 FIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIG-K---L-----------------ETAWELFQSLSRV 455 (598)
Q Consensus 397 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~---~-----------------~~A~~~~~~~~~~ 455 (598)
++++....|.++-.-++|..+...|...+.....-++..+++.+ . . +.....-.++.+.
T Consensus 439 ~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~ 518 (625)
T KOG4422|consen 439 LLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQ 518 (625)
T ss_pred HHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhc
Confidence 99988888888888888888876654333333333333333322 0 0 0001111122222
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHhcCCccccchhHHHHHHHh
Q 047932 456 GLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEAKG----VEPDCVIFNTIMLGFIRNNETSKSSRGKLMSQMSS 526 (598)
Q Consensus 456 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 526 (598)
.+ .....+..+-.+.+.|..++|.+++..+.+.+ ..|......-++..-.+.+.+-.|.. .++-|..
T Consensus 519 ~~--~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~--~lQ~a~~ 589 (625)
T KOG4422|consen 519 DW--PATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIE--VLQLASA 589 (625)
T ss_pred cC--ChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHH--HHHHHHH
Confidence 22 23345555556677788888888777775442 12333333445555556666666777 6666653
No 35
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.73 E-value=1.5e-15 Score=137.71 Aligned_cols=437 Identities=14% Similarity=0.080 Sum_probs=205.1
Q ss_pred cHHHHHHHHHHHHHcCCCCCHhhH-HHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCC--HhHHHHHHHHHHhcCC
Q 047932 120 RIMEAAALFTKLRVFGCEPDVFTY-NTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPD--TVTYNTIIDGVCKEGF 196 (598)
Q Consensus 120 ~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~ 196 (598)
...+|+..|+-+++...-|+.... ..+..++.+...+.+|++.|+..+..-+. +..+ ....+.+...+.+.|+
T Consensus 216 m~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvps----ink~~rikil~nigvtfiq~gq 291 (840)
T KOG2003|consen 216 MTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPS----INKDMRIKILNNIGVTFIQAGQ 291 (840)
T ss_pred HHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccc----cchhhHHHHHhhcCeeEEeccc
Confidence 555666666666665555555433 34566777777778888777776654311 1111 2234555556677788
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhH--------HHHHHHHHhCCC--
Q 047932 197 VDKAMELFLQMKDENINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTF--------SVIVDELCKNGK-- 266 (598)
Q Consensus 197 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--------~~l~~~~~~~g~-- 266 (598)
++.|+..|+...+. .|+..+-..|+-++...|+.++..+.|.+|+.....+|..-| ..|+.-..+...
T Consensus 292 y~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk 369 (840)
T KOG2003|consen 292 YDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLK 369 (840)
T ss_pred chhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHH
Confidence 88888888777664 466666555666667777888888888887765444544322 122222111111
Q ss_pred ------HHHHHHHHHHHHh---cCCCcCHH-------------HHH--------HHHHHHHhcCCHHHHHHHHHHHHHCC
Q 047932 267 ------MEEASRLLDLMIQ---IGVHPNTF-------------VYN--------TLMDGFCLTGRVNHAKELFVSMESNG 316 (598)
Q Consensus 267 ------~~~a~~~~~~~~~---~~~~~~~~-------------~~~--------~ll~~~~~~g~~~~a~~~~~~~~~~~ 316 (598)
-..|.+.+-...+ --+.|+-. .+. .-...+.+.|+++.|.++++-+.+..
T Consensus 370 ~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kd 449 (840)
T KOG2003|consen 370 NMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKD 449 (840)
T ss_pred HHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhcc
Confidence 1112221111111 01111110 000 01223567788888888777666543
Q ss_pred CCCChhhHHHHHHHHHh--cCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHH
Q 047932 317 CMHDVVSYTTLINGYCK--TKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFEVHQVEHALKLFDEMQHNDVAADTYIY 394 (598)
Q Consensus 317 ~~~~~~~~~~l~~~~~~--~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 394 (598)
-..-...-+.|-..+.- -.++..|..+-+.....+ .-+......-.......|++++|...|++.+..+.. .....
T Consensus 450 nk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndas-c~eal 527 (840)
T KOG2003|consen 450 NKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDAS-CTEAL 527 (840)
T ss_pred chhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchH-HHHHH
Confidence 22211111211111111 112333333333222211 001111111111122344555555555555544311 11222
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 047932 395 NTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCND 474 (598)
Q Consensus 395 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 474 (598)
..+.-.+-..|+.++|+++|-++... +..+..++..+...|....+...|++++-+.... ++.|......|...|-+.
T Consensus 528 fniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqe 605 (840)
T KOG2003|consen 528 FNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQE 605 (840)
T ss_pred HHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcc
Confidence 22233344455555555555443321 1224444555555555555555555555444432 233344455555555555
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccccchhHHHHHHHhcccCCCCCChHHHHH----HHHHhCCCC
Q 047932 475 GQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFIRNNETSKSSRGKLMSQMSSCWSMCFQPKTLICSI----SIMLQKDMS 550 (598)
Q Consensus 475 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~----~~~~~~~~~ 550 (598)
|+-..|.+++-+-... ++-+..+..-|...|....-+++|+. +++++. -+.|+..-|.. .++..|+++
T Consensus 606 gdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~--y~ekaa-----liqp~~~kwqlmiasc~rrsgnyq 677 (840)
T KOG2003|consen 606 GDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAIN--YFEKAA-----LIQPNQSKWQLMIASCFRRSGNYQ 677 (840)
T ss_pred cchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHH--HHHHHH-----hcCccHHHHHHHHHHHHHhcccHH
Confidence 5555555544333221 34444555555555555555555555 555544 23455555544 224445555
Q ss_pred CChhhHHHhhhcCccccchhhHhh
Q 047932 551 PGDTMFSTALLMDPDCSCDLESLI 574 (598)
Q Consensus 551 ~a~~~~~~~l~~~P~~~~~~~~l~ 574 (598)
+|...|+......|+|-..+.-|+
T Consensus 678 ka~d~yk~~hrkfpedldclkflv 701 (840)
T KOG2003|consen 678 KAFDLYKDIHRKFPEDLDCLKFLV 701 (840)
T ss_pred HHHHHHHHHHHhCccchHHHHHHH
Confidence 555555555555555555444443
No 36
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.72 E-value=2.8e-13 Score=133.73 Aligned_cols=368 Identities=16% Similarity=0.148 Sum_probs=248.7
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 047932 144 NTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTYNSLI 223 (598)
Q Consensus 144 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 223 (598)
......+.-.|+.++|..++.++.+.. +.+...|.+|...|-..|+.+++...+-.+...+.+ |...|..+.
T Consensus 143 l~eAN~lfarg~~eeA~~i~~EvIkqd-------p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~-d~e~W~~la 214 (895)
T KOG2076|consen 143 LGEANNLFARGDLEEAEEILMEVIKQD-------PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPK-DYELWKRLA 214 (895)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhC-------ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCC-ChHHHHHHH
Confidence 333444445588888888888888775 566778888888888888888888777666554333 667788888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcCHHHH----HHHHHHHHhc
Q 047932 224 HCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVY----NTLMDGFCLT 299 (598)
Q Consensus 224 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~----~~ll~~~~~~ 299 (598)
......|.+++|.-.|.+.++.. +++...+-.-...|-+.|+...|..-+.++.+...+.|..-+ ...+..+...
T Consensus 215 dls~~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~ 293 (895)
T KOG2076|consen 215 DLSEQLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITH 293 (895)
T ss_pred HHHHhcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHh
Confidence 88888888888888888888763 345555555667778888888888888888776432232222 2334556666
Q ss_pred CCHHHHHHHHHHHHHC-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCC---------------------------
Q 047932 300 GRVNHAKELFVSMESN-GCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKG--------------------------- 351 (598)
Q Consensus 300 g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------------------------- 351 (598)
++-+.|.+.++..... +-..+...++.++..+.+...++.|......+....
T Consensus 294 ~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~ 373 (895)
T KOG2076|consen 294 NERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKE 373 (895)
T ss_pred hHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCC
Confidence 7777787777776652 123355667778888888888888877777665511
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC--CCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHH
Q 047932 352 IRPTVVTYSTLFLGLFEVHQVEHALKLFDEMQHND--VAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISY 429 (598)
Q Consensus 352 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 429 (598)
..++... ..+.-++...+..+....+........ +.-+...|.-+..++...|++.+|+.+|..+......-+...|
T Consensus 374 ~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw 452 (895)
T KOG2076|consen 374 LSYDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVW 452 (895)
T ss_pred CCccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhh
Confidence 1112222 123334444555555555555555554 3334667888888888888888888888888876555567788
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH--------HCCCCCCHHHHH
Q 047932 430 SCLIDGLCKIGKLETAWELFQSLSRVGLLPN-VVTYNIMIHGLCNDGQMDKAHDLFLDME--------AKGVEPDCVIFN 500 (598)
Q Consensus 430 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~~~p~~~~~~ 500 (598)
-.+..+|...|.+++|.+.|+..+.. .|+ ...-..|...+.+.|+.++|.+.+..+. ..+.+|+.....
T Consensus 453 ~~~a~c~~~l~e~e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~ 530 (895)
T KOG2076|consen 453 YKLARCYMELGEYEEAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILA 530 (895)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHH
Confidence 88888888888888888888888874 333 4455566777788888888888888753 223455555556
Q ss_pred HHHHHHHhcCCccccchhHHHHHHH
Q 047932 501 TIMLGFIRNNETSKSSRGKLMSQMS 525 (598)
Q Consensus 501 ~l~~~~~~~g~~~~A~~~~~~~~~~ 525 (598)
.....+...|+.++=.. ....|+
T Consensus 531 ~r~d~l~~~gk~E~fi~--t~~~Lv 553 (895)
T KOG2076|consen 531 HRCDILFQVGKREEFIN--TASTLV 553 (895)
T ss_pred HHHHHHHHhhhHHHHHH--HHHHHH
Confidence 66667777887776555 544444
No 37
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=8.8e-12 Score=114.03 Aligned_cols=365 Identities=12% Similarity=0.067 Sum_probs=266.8
Q ss_pred CCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC
Q 047932 135 GCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINP 214 (598)
Q Consensus 135 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 214 (598)
+...|...+-..+..+-+.|....|+..|....... |-.-..|.-|.... .+.+.+.. ... +.+.
T Consensus 159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~-------P~~W~AWleL~~li---t~~e~~~~----l~~-~l~~ 223 (559)
T KOG1155|consen 159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY-------PWFWSAWLELSELI---TDIEILSI----LVV-GLPS 223 (559)
T ss_pred cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC-------CcchHHHHHHHHhh---chHHHHHH----HHh-cCcc
Confidence 445566666666777888999999999999988764 33444444443332 22222222 221 1221
Q ss_pred CHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCC--CcCHHHHH
Q 047932 215 NVVTY--NSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGV--HPNTFVYN 290 (598)
Q Consensus 215 ~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~ 290 (598)
|..-+ -.+..++-.....+++..-.+.....|++-+...-+....+.....++++|+.+|+++.+... -.|..+|.
T Consensus 224 ~~h~M~~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlyS 303 (559)
T KOG1155|consen 224 DMHWMKKFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYS 303 (559)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHh
Confidence 21111 224456666678888888888888888877776666667777888999999999999998742 12455666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHhcC
Q 047932 291 TLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFEVH 370 (598)
Q Consensus 291 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 370 (598)
.++ |.+..+..- ..+..-...-.+--+.|.-.+.+.|.-.++.++|...|++..+.+.. ....|+.+..-|....
T Consensus 304 N~L--Yv~~~~skL--s~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmK 378 (559)
T KOG1155|consen 304 NVL--YVKNDKSKL--SYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMK 378 (559)
T ss_pred HHH--HHHhhhHHH--HHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhc
Confidence 655 333332221 11211111111335667788889999999999999999999987654 5678899999999999
Q ss_pred CHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 047932 371 QVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQ 450 (598)
Q Consensus 371 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 450 (598)
+...|..-++.+++.+ +.|-..|-.+.++|.-.+.+.-|+-+|+++.... +.|...|.+|..+|.+.++.++|++.|.
T Consensus 379 Nt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCyk 456 (559)
T KOG1155|consen 379 NTHAAIESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYK 456 (559)
T ss_pred ccHHHHHHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHH
Confidence 9999999999999985 7789999999999999999999999999999765 5689999999999999999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCHHH---HHHHHHHHHhcCCccccchhHHHHH
Q 047932 451 SLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEAK----GVEPDCVI---FNTIMLGFIRNNETSKSSRGKLMSQ 523 (598)
Q Consensus 451 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~ 523 (598)
+....|- .+...+..|...|-+.++.++|...|++.++. | ..+..+ ..-|..-+.+.+++++|.. +...
T Consensus 457 rai~~~d-te~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg-~~~~~t~ka~~fLA~~f~k~~~~~~As~--Ya~~ 532 (559)
T KOG1155|consen 457 RAILLGD-TEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEG-EIDDETIKARLFLAEYFKKMKDFDEASY--YATL 532 (559)
T ss_pred HHHhccc-cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhc-ccchHHHHHHHHHHHHHHhhcchHHHHH--HHHH
Confidence 9988653 36688999999999999999999999888763 3 223322 3335556778999999888 7777
Q ss_pred HH
Q 047932 524 MS 525 (598)
Q Consensus 524 ~~ 525 (598)
..
T Consensus 533 ~~ 534 (559)
T KOG1155|consen 533 VL 534 (559)
T ss_pred Hh
Confidence 65
No 38
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.69 E-value=2.2e-11 Score=115.81 Aligned_cols=499 Identities=13% Similarity=0.122 Sum_probs=324.0
Q ss_pred HhhccCCcccccCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH-hHHH-HH
Q 047932 40 ERSKSSGQGDINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLY-THSI-LI 117 (598)
Q Consensus 40 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~-ll 117 (598)
+.-..|++.+.++|+...-...|++++..-|.......|...+......|-++-++.+|++.++.. |... -|.. +.
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~--P~~~eeyie~L~ 180 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVA--PEAREEYIEYLA 180 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcC--HHHHHHHHHHHH
Confidence 344457888899999999999999999988876777899999999999999999999999999863 4332 2333 33
Q ss_pred hc-cHHHHHHHHHHHHHcC------CCCCHhhHHHHHHHHHhcCChhH---HHHHHHHHHhcCCCCccccCCC--HhHHH
Q 047932 118 NC-RIMEAAALFTKLRVFG------CEPDVFTYNTLINGLCRTGHTIV---ALNLFEEMANGNGEFGVVCKPD--TVTYN 185 (598)
Q Consensus 118 ~~-~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~~~~~~~~~--~~~~~ 185 (598)
.. ++++|.+.+...+..+ .+.+...|..+.....++-+.-. ...+++.+..+ -+| ...|+
T Consensus 181 ~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--------ftDq~g~Lw~ 252 (835)
T KOG2047|consen 181 KSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--------FTDQLGFLWC 252 (835)
T ss_pred hccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--------CcHHHHHHHH
Confidence 33 8899998888875421 13345567777777776654433 33444554443 244 45789
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc----------------------CCHHHHHHHHHHHH
Q 047932 186 TIIDGVCKEGFVDKAMELFLQMKDENINPNVVTYNSLIHCFSHA----------------------DDWNEAKRLFIKMM 243 (598)
Q Consensus 186 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------------------~~~~~a~~~~~~~~ 243 (598)
+|.+.|.+.|.+++|.++|++.... ..++.-|..+.++|+.- -+++-.+.-|+.++
T Consensus 253 SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm 330 (835)
T KOG2047|consen 253 SLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLM 330 (835)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHH
Confidence 9999999999999999999998764 22444444444444321 12333444455544
Q ss_pred HCCC-----------CCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCc------CHHHHHHHHHHHHhcCCHHHHH
Q 047932 244 DQGV-----------HPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHP------NTFVYNTLMDGFCLTGRVNHAK 306 (598)
Q Consensus 244 ~~~~-----------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~------~~~~~~~ll~~~~~~g~~~~a~ 306 (598)
.... +.++..|...+. ...|+..+-...+.++++. +.| -...|..+...|-..|+.+.|.
T Consensus 331 ~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aR 407 (835)
T KOG2047|consen 331 NRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDAR 407 (835)
T ss_pred hccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHH
Confidence 4321 223334443332 3456677777788777764 222 2346888889999999999999
Q ss_pred HHHHHHHHCCCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCC----------C-------CHHHHHHHHHHH
Q 047932 307 ELFVSMESNGCMHD---VVSYTTLINGYCKTKNVEEALNLYRKMLPKGIR----------P-------TVVTYSTLFLGL 366 (598)
Q Consensus 307 ~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~----------~-------~~~~~~~l~~~~ 366 (598)
.+|++..+...+.- ..+|-.....-.+..+++.|+++++......-. | +...|...+..-
T Consensus 408 vifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~Dle 487 (835)
T KOG2047|consen 408 VIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLE 487 (835)
T ss_pred HHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHH
Confidence 99999987654332 345555566667788899999999887543111 1 223344455555
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCH-HHHHHHHHHHHHc---CCH
Q 047932 367 FEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDI-ISYSCLIDGLCKI---GKL 442 (598)
Q Consensus 367 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~---g~~ 442 (598)
-..|-++....+|+++.+..+. ++.........+-...-++++.++|++-+..-..|++ ..|+..+.-+.+. .++
T Consensus 488 Es~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~kl 566 (835)
T KOG2047|consen 488 ESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKL 566 (835)
T ss_pred HHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCH
Confidence 5678889999999999887644 3333333344455666788899999887765445554 3777777766652 368
Q ss_pred HHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCccccchh
Q 047932 443 ETAWELFQSLSRVGLLPNVVT--YNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPDC--VIFNTIMLGFIRNNETSKSSRG 518 (598)
Q Consensus 443 ~~A~~~~~~~~~~~~~p~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~ 518 (598)
+.|..+|++.++ |.+|...- |......--+.|....|+.+++++.. ++++.. ..|+..+.--...=-+.....
T Consensus 567 EraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~-~v~~a~~l~myni~I~kaae~yGv~~TR~- 643 (835)
T KOG2047|consen 567 ERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS-AVKEAQRLDMYNIYIKKAAEIYGVPRTRE- 643 (835)
T ss_pred HHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHHhCCcccHH-
Confidence 999999999998 45554322 22222222356888899999998765 344432 455555543322222334445
Q ss_pred HHHHHHHhcccCCCCCChHHHHH------HHHHhCCCCCChhhHHHhhhcC
Q 047932 519 KLMSQMSSCWSMCFQPKTLICSI------SIMLQKDMSPGDTMFSTALLMD 563 (598)
Q Consensus 519 ~~~~~~~~~~~~~~~p~~~~~~~------~~~~~~~~~~a~~~~~~~l~~~ 563 (598)
+++++++. -||...-.+ +-...|..++|+..+...-++.
T Consensus 644 -iYekaIe~-----Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~ 688 (835)
T KOG2047|consen 644 -IYEKAIES-----LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQIC 688 (835)
T ss_pred -HHHHHHHh-----CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcC
Confidence 77777754 465544333 2233577777877777776663
No 39
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.68 E-value=4.4e-13 Score=123.11 Aligned_cols=416 Identities=13% Similarity=0.104 Sum_probs=251.5
Q ss_pred CCcccccCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhc-cHHH
Q 047932 45 SGQGDINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINC-RIME 123 (598)
Q Consensus 45 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~-~~~~ 123 (598)
-|+.+.+.|.|++|+++|.+++...|. .+..|.....+|...|+|+++.+--.+.++. .|+ ....+++. .-.+
T Consensus 121 ~GN~~f~~kkY~eAIkyY~~AI~l~p~--epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~--Y~KAl~RRA~A~E 194 (606)
T KOG0547|consen 121 KGNKFFRNKKYDEAIKYYTQAIELCPD--EPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPD--YVKALLRRASAHE 194 (606)
T ss_pred hhhhhhhcccHHHHHHHHHHHHhcCCC--CchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcH--HHHHHHHHHHHHH
Confidence 577778999999999999999998876 5889999999999999999999988888864 343 22233322 1111
Q ss_pred HHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChh--------HHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcC
Q 047932 124 AAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTI--------VALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEG 195 (598)
Q Consensus 124 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--------~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 195 (598)
.+.-|.+... -.+-.++...+-...-.. .|..-.++-.+.+ .+.+-|+.....+....+...-
T Consensus 195 ~lg~~~eal~------D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~n---r~p~lPS~~fi~syf~sF~~~~ 265 (606)
T KOG0547|consen 195 QLGKFDEALF------DVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKEN---RPPVLPSATFIASYFGSFHADP 265 (606)
T ss_pred hhccHHHHHH------hhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhccc---CCCCCCcHHHHHHHHhhccccc
Confidence 1111111111 111122222221111111 1222222222211 0112333333333322221100
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHC---CCCCC---------HhhHHHHHHHHH
Q 047932 196 FVDKAMELFLQMKDENINPNVVTYNSLIHCFSH-ADDWNEAKRLFIKMMDQ---GVHPN---------VVTFSVIVDELC 262 (598)
Q Consensus 196 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~---~~~~~---------~~~~~~l~~~~~ 262 (598)
. ..+...+.+-|...-..+=..+.. ...+..|.+.+.+-... ....+ ..+.......+.
T Consensus 266 ~--------~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~f 337 (606)
T KOG0547|consen 266 K--------PLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHF 337 (606)
T ss_pred c--------ccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhh
Confidence 0 000000000011111111111111 11233333333322111 00111 112222223344
Q ss_pred hCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 047932 263 KNGKMEEASRLLDLMIQIGVHPNTFVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALN 342 (598)
Q Consensus 263 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 342 (598)
-.|+.-.|..-|+..+..... +...|.-+..+|....+.++....|+...+.+ +.++.+|..-...+.-.+++++|..
T Consensus 338 L~g~~~~a~~d~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~a 415 (606)
T KOG0547|consen 338 LKGDSLGAQEDFDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIA 415 (606)
T ss_pred hcCCchhhhhhHHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHH
Confidence 568888899999999887543 33337777788999999999999999998876 5578888888888888899999999
Q ss_pred HHHHHccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCC
Q 047932 343 LYRKMLPKGIRPTVVTYSTLFLGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKY 422 (598)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 422 (598)
-|++.+...+. +...|..+.-+..+.+.++++...|++..+. +|..+.+|+.....+...++++.|.+.|+..+....
T Consensus 416 DF~Kai~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~ 493 (606)
T KOG0547|consen 416 DFQKAISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEP 493 (606)
T ss_pred HHHHHhhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcc
Confidence 99999886433 5566666666677888999999999999887 467788999999999999999999999998876532
Q ss_pred C-----CCHHHH--HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047932 423 E-----LDIISY--SCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEA 489 (598)
Q Consensus 423 ~-----~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 489 (598)
. .+...+ -.++. +.-.+++..|..++++..+.+.+ ....|..|...-.+.|+.++|+++|++...
T Consensus 494 ~~~~~~v~~~plV~Ka~l~-~qwk~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 494 REHLIIVNAAPLVHKALLV-LQWKEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred ccccccccchhhhhhhHhh-hchhhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 2 122211 12222 22348899999999999885432 356788899999999999999999998764
No 40
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.67 E-value=3.8e-13 Score=131.14 Aligned_cols=283 Identities=10% Similarity=0.052 Sum_probs=173.0
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHhh-HHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcCHHHHH--HHHHHHHhcCCHHHH
Q 047932 229 ADDWNEAKRLFIKMMDQGVHPNVVT-FSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVYN--TLMDGFCLTGRVNHA 305 (598)
Q Consensus 229 ~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~--~ll~~~~~~g~~~~a 305 (598)
.|+++.|.+.+....+.. +++.. |........+.|+++.|..++.++.+. .|+..... .....+...|+++.|
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 566666666666544431 12222 222233446667777777777766653 23332222 234566667777777
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHH
Q 047932 306 KELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTV-------VTYSTLFLGLFEVHQVEHALKL 378 (598)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~ 378 (598)
...++.+.+.. |.+......+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...++
T Consensus 173 l~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~ 251 (398)
T PRK10747 173 RHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRW 251 (398)
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 77777766654 445666666677777777777777777777665443211 1222223333334445555555
Q ss_pred HHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 047932 379 FDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLL 458 (598)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 458 (598)
++.+.+. .+.++.....+...+...|+.++|..++++..+. +++.... ++.+....++.+++.+..+...+.. +
T Consensus 252 w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~-P 325 (398)
T PRK10747 252 WKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH-G 325 (398)
T ss_pred HHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhC-C
Confidence 5555433 2446667777777788888888888888777763 4444322 2233334577788888887777652 2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccccchhHHHHHHHh
Q 047932 459 PNVVTYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFIRNNETSKSSRGKLMSQMSS 526 (598)
Q Consensus 459 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 526 (598)
-|...+..+...|.+.|++++|.+.|+.+.+. .|+...+..+..++.+.|+.++|.+ ++++...
T Consensus 326 ~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~--~~~~~l~ 389 (398)
T PRK10747 326 DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAA--MRRDGLM 389 (398)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHH--HHHHHHh
Confidence 34556677777788888888888888887764 5777777778888888888888877 7777754
No 41
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.66 E-value=6.3e-16 Score=144.10 Aligned_cols=262 Identities=15% Similarity=0.103 Sum_probs=108.0
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcC-CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc
Q 047932 256 VIVDELCKNGKMEEASRLLDLMIQIG-VHPNTFVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKT 334 (598)
Q Consensus 256 ~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 334 (598)
.+...+.+.|++++|+++++...... .+.+...|..+...+...++++.|.+.++++...+ +.+...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccc
Confidence 45677778888888888886544433 23344555556667777888888888888887764 2355566667666 678
Q ss_pred CCHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC-CCcCHHHHHHHHHHHHHcCCHHHHHHH
Q 047932 335 KNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFEVHQVEHALKLFDEMQHND-VAADTYIYNTFIDGLCKNGFVLEALEL 413 (598)
Q Consensus 335 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~ 413 (598)
+++++|.+++....+.. ++...+..++..+...++++++..+++.+.... .+.+...|..+...+.+.|+.++|+..
T Consensus 91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 88888888887766542 455666777788888889999888888876532 345677888888888999999999999
Q ss_pred HHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 047932 414 FCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEAKGVE 493 (598)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 493 (598)
++++++.. +.|......++..+...|+.+++.++++...+.. +.|...+..+..++...|+.++|+.+|++..+.. +
T Consensus 169 ~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p 245 (280)
T PF13429_consen 169 YRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-P 245 (280)
T ss_dssp HHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-T
T ss_pred HHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-c
Confidence 99988764 3367788888999999999999888888877652 3455667788889999999999999999988764 6
Q ss_pred CCHHHHHHHHHHHHhcCCccccchhHHHHHHHh
Q 047932 494 PDCVIFNTIMLGFIRNNETSKSSRGKLMSQMSS 526 (598)
Q Consensus 494 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 526 (598)
.|+.....+..++...|+.++|.+ +.+++.+
T Consensus 246 ~d~~~~~~~a~~l~~~g~~~~A~~--~~~~~~~ 276 (280)
T PF13429_consen 246 DDPLWLLAYADALEQAGRKDEALR--LRRQALR 276 (280)
T ss_dssp T-HHHHHHHHHHHT-------------------
T ss_pred cccccccccccccccccccccccc--ccccccc
Confidence 688888899999999999999999 8887754
No 42
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.66 E-value=8.2e-13 Score=128.82 Aligned_cols=126 Identities=17% Similarity=0.085 Sum_probs=56.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHH
Q 047932 285 NTFVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFL 364 (598)
Q Consensus 285 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 364 (598)
+......+...+...|+.++|..++++..+. +++... .++.+....++.+++++..+...+..+. |...+..+..
T Consensus 262 ~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~P~-~~~l~l~lgr 336 (398)
T PRK10747 262 QVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQHGD-TPLLWSTLGQ 336 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhCCC-CHHHHHHHHH
Confidence 3444444444444555555555555444442 222211 1122222334455555555544443221 3334444444
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 047932 365 GLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAI 417 (598)
Q Consensus 365 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 417 (598)
.+...+++++|.+.|+.+.+. .|+...+..+...+.+.|+.++|..++++.
T Consensus 337 l~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 337 LLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred HHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 555555555555555555443 344444444555555555555555555444
No 43
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.66 E-value=5.1e-13 Score=122.73 Aligned_cols=420 Identities=12% Similarity=0.036 Sum_probs=253.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhccHHHHHHHHHHHHHcCCCCC-HhhHHHHHHHHHhcCCh
Q 047932 78 FNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCRIMEAAALFTKLRVFGCEPD-VFTYNTLINGLCRTGHT 156 (598)
Q Consensus 78 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~ 156 (598)
+....+-|.++|++++|++.|.+++.. .|| ...|.....+|...|++
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l--------------------------------~p~epiFYsNraAcY~~lgd~ 165 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIEL--------------------------------CPDEPIFYSNRAACYESLGDW 165 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhc--------------------------------CCCCchhhhhHHHHHHHHhhH
Confidence 445555666777777777777777654 345 56677888888889999
Q ss_pred hHHHHHHHHHHhcCCCCccccCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHhh-CCCCCCHHHHHHHHHHHHhcCCHHH
Q 047932 157 IVALNLFEEMANGNGEFGVVCKPD-TVTYNTIIDGVCKEGFVDKAMELFLQMKD-ENINPNVVTYNSLIHCFSHADDWNE 234 (598)
Q Consensus 157 ~~A~~~~~~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~ 234 (598)
++..+---+.++.+ |+ +..+..-..++-..|++++|+.=..-..- .|+. +..+--.+=+.+- ..
T Consensus 166 ~~Vied~TkALEl~--------P~Y~KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~-n~s~~~~~eR~Lk-----k~ 231 (606)
T KOG0547|consen 166 EKVIEDCTKALELN--------PDYVKALLRRASAHEQLGKFDEALFDVTVLCILEGFQ-NASIEPMAERVLK-----KQ 231 (606)
T ss_pred HHHHHHHHHHhhcC--------cHHHHHHHHHHHHHHhhccHHHHHHhhhHHHHhhhcc-cchhHHHHHHHHH-----HH
Confidence 98888888887754 43 55666667777777887776542221111 1111 1111111111111 11
Q ss_pred HHHHHHHHHH-CC--CCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhc-CCHHHHHHHHH
Q 047932 235 AKRLFIKMMD-QG--VHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTLMDGFCLT-GRVNHAKELFV 310 (598)
Q Consensus 235 a~~~~~~~~~-~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-g~~~~a~~~~~ 310 (598)
|..-.++-.+ .+ +-|+.....+...++...-.. .+...+-..|...-..+=..+... ..+..|...+.
T Consensus 232 a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~--------~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~t 303 (606)
T KOG0547|consen 232 AMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKP--------LFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKAT 303 (606)
T ss_pred HHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccc--------cccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHH
Confidence 2222222222 11 234444333333333211000 000000001111111111111111 12333333333
Q ss_pred HHHHCC---CC---CC------hhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 047932 311 SMESNG---CM---HD------VVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFEVHQVEHALKL 378 (598)
Q Consensus 311 ~~~~~~---~~---~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 378 (598)
+-.... .. .| ..+.......+.-.|+.-.|..-|+..+.....++. .|..+...|...++.++.+..
T Consensus 304 e~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~ 382 (606)
T KOG0547|consen 304 EECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKD 382 (606)
T ss_pred HHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHH
Confidence 221110 00 01 112222223345578889999999999887555333 377778889999999999999
Q ss_pred HHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 047932 379 FDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLL 458 (598)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 458 (598)
|+.+.+.+ +.++.+|..-.....-.+++++|..-|++.+... +-+...|..+.-+..+.++++++...|++..+. ++
T Consensus 383 F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP 459 (606)
T KOG0547|consen 383 FNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FP 459 (606)
T ss_pred HHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CC
Confidence 99999876 5567788888888888899999999999998765 336677777777778889999999999999876 55
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----CCCCHHHHH--HHHHHHHhcCCccccchhHHHHHHHhcccCC
Q 047932 459 PNVVTYNIMIHGLCNDGQMDKAHDLFLDMEAKG-----VEPDCVIFN--TIMLGFIRNNETSKSSRGKLMSQMSSCWSMC 531 (598)
Q Consensus 459 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~p~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 531 (598)
-.+..|+.....+..+++++.|.+.|+..++.. +..+...+. .++..-. .+++..|.. +++++++
T Consensus 460 ~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~--Ll~KA~e----- 531 (606)
T KOG0547|consen 460 NCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQW-KEDINQAEN--LLRKAIE----- 531 (606)
T ss_pred CCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhch-hhhHHHHHH--HHHHHHc-----
Confidence 557889999999999999999999999998742 111222221 2222222 378889999 9999984
Q ss_pred CCCChHHHHH----HHHHhCCCCCChhhHHHhhhcC
Q 047932 532 FQPKTLICSI----SIMLQKDMSPGDTMFSTALLMD 563 (598)
Q Consensus 532 ~~p~~~~~~~----~~~~~~~~~~a~~~~~~~l~~~ 563 (598)
+.|....... +...+|++++|+++|+++..+-
T Consensus 532 ~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lA 567 (606)
T KOG0547|consen 532 LDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLA 567 (606)
T ss_pred cCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 4676554433 5567899999999999987653
No 44
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.65 E-value=1.2e-12 Score=128.44 Aligned_cols=121 Identities=12% Similarity=0.149 Sum_probs=68.6
Q ss_pred hcCChhHHHHHHHHHHhcCCCCccccCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC
Q 047932 152 RTGHTIVALNLFEEMANGNGEFGVVCKPD-TVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTYNSLIHCFSHAD 230 (598)
Q Consensus 152 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 230 (598)
..|+++.|.+.+.+..+.. |+ ...+-....++.+.|+++.|.+.+.+..+....+...........+...|
T Consensus 96 ~~g~~~~A~~~l~~~~~~~--------~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~ 167 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHA--------AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQN 167 (409)
T ss_pred hCCCHHHHHHHHHHHhhcC--------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCC
Confidence 4566666666666655532 32 23333444555666666666666666654322211223333455566666
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Q 047932 231 DWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIG 281 (598)
Q Consensus 231 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 281 (598)
+++.|...++.+.+.. +-+...+..+...+...|+++++.+.+..+.+.+
T Consensus 168 ~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~ 217 (409)
T TIGR00540 168 ELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAG 217 (409)
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcC
Confidence 6666666666666653 2244555666666666666666666666666654
No 45
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=4.4e-12 Score=115.94 Aligned_cols=367 Identities=10% Similarity=0.038 Sum_probs=263.9
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhH--H
Q 047932 178 KPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTF--S 255 (598)
Q Consensus 178 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~ 255 (598)
..|...+-.....+.+.|....|++.|...... .+-.-.+|..|..... +. +....... +.+.+...+ -
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~-~P~~W~AWleL~~lit---~~----e~~~~l~~-~l~~~~h~M~~~ 231 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR-YPWFWSAWLELSELIT---DI----EILSILVV-GLPSDMHWMKKF 231 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhc-CCcchHHHHHHHHhhc---hH----HHHHHHHh-cCcccchHHHHH
Confidence 445666666667777889999999999988764 2334445544444322 22 22222222 222222211 1
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CChhhHHHHHHHHHh
Q 047932 256 VIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTLMDGFCLTGRVNHAKELFVSMESNGCM--HDVVSYTTLINGYCK 333 (598)
Q Consensus 256 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~ 333 (598)
.+..++......+++.+-.+...+.|++.+...-+....+.....|+|+|+.+|+++.+...- .|..+|..++-.-..
T Consensus 232 F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~ 311 (559)
T KOG1155|consen 232 FLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKND 311 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhh
Confidence 244566667788999999999999998877777777777788899999999999999987411 156666665533322
Q ss_pred cCCH-HHHHHHHHHHccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHH
Q 047932 334 TKNV-EEALNLYRKMLPKGIRPTVVTYSTLFLGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALE 412 (598)
Q Consensus 334 ~~~~-~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 412 (598)
.... --|..+++ +- +-.+.|...+.+-|+-.++.++|...|+++++.+ +.....|+.+.+-|....+...|..
T Consensus 312 ~skLs~LA~~v~~-id----KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~ 385 (559)
T KOG1155|consen 312 KSKLSYLAQNVSN-ID----KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIE 385 (559)
T ss_pred hHHHHHHHHHHHH-hc----cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHH
Confidence 2111 12222221 11 1245677888888999999999999999999986 5567889999999999999999999
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 047932 413 LFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEAKGV 492 (598)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 492 (598)
.++.+++.+ +.|...|-.|.++|.-.+.+.-|+-.|++..... +-|...|.+|+.+|.+.++.++|++.|.+....|
T Consensus 386 sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~- 462 (559)
T KOG1155|consen 386 SYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG- 462 (559)
T ss_pred HHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-
Confidence 999999886 5699999999999999999999999999999852 3368899999999999999999999999999876
Q ss_pred CCCHHHHHHHHHHHHhcCCccccchhHHHHHHHhcc-cCC-CCCChH---HHHH-HHHHhCCCCCChhhHHHhhhcCc
Q 047932 493 EPDCVIFNTIMLGFIRNNETSKSSRGKLMSQMSSCW-SMC-FQPKTL---ICSI-SIMLQKDMSPGDTMFSTALLMDP 564 (598)
Q Consensus 493 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~-~~p~~~---~~~~-~~~~~~~~~~a~~~~~~~l~~~P 564 (598)
.-+...+..+...|-+.++.++|.. .+++-++.. ..| ..|... .|.+ .....++.++|....-.++.-+|
T Consensus 463 dte~~~l~~LakLye~l~d~~eAa~--~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~ 538 (559)
T KOG1155|consen 463 DTEGSALVRLAKLYEELKDLNEAAQ--YYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGET 538 (559)
T ss_pred ccchHHHHHHHHHHHHHHhHHHHHH--HHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCc
Confidence 4466889999999999999999999 998877630 001 122111 1222 23446777877776666655443
No 46
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.65 E-value=6e-13 Score=130.57 Aligned_cols=291 Identities=12% Similarity=0.064 Sum_probs=171.5
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHh-hHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHH
Q 047932 227 SHADDWNEAKRLFIKMMDQGVHPNVV-TFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTLMDGFCLTGRVNHA 305 (598)
Q Consensus 227 ~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a 305 (598)
...|+++.|.+.+.+..+. .|+.. .+-....+....|+++.|.+++.+..+....+...........+...|+++.|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence 3467777777777666554 23322 23334455666677777777777765542121122333345666667777777
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHH-HHHH---HHHhcCCHHHHHHHHHH
Q 047932 306 KELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYS-TLFL---GLFEVHQVEHALKLFDE 381 (598)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-~l~~---~~~~~~~~~~a~~~~~~ 381 (598)
...++.+.+.. |.+...+..+...+...|++++|.+.+..+.+.++. +...+. .-.. .....+..+.+...+..
T Consensus 173 l~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~ 250 (409)
T TIGR00540 173 RHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLN 250 (409)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 77777777664 445566667777777777777777777777766443 222221 1111 11222222222334433
Q ss_pred HhhCC---CCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 047932 382 MQHND---VAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIIS-YSCLIDGLCKIGKLETAWELFQSLSRVGL 457 (598)
Q Consensus 382 ~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 457 (598)
+.+.. .+.+...+..++..+...|+.++|..++++..+......... ...........++.+.+.+.+++..+.
T Consensus 251 ~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~-- 328 (409)
T TIGR00540 251 WWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN-- 328 (409)
T ss_pred HHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh--
Confidence 33321 123667777777778888888888888888776532211111 111112223346677777777777664
Q ss_pred CC-CH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccccchhHHHHHHH
Q 047932 458 LP-NV--VTYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFIRNNETSKSSRGKLMSQMS 525 (598)
Q Consensus 458 ~p-~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 525 (598)
.| |. ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+ ++++..
T Consensus 329 ~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~--~~~~~l 397 (409)
T TIGR00540 329 VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAA--MRQDSL 397 (409)
T ss_pred CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHH--HHHHHH
Confidence 23 33 45567778888888888888888854333346777777788888888888888888 887764
No 47
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.64 E-value=1.2e-12 Score=113.99 Aligned_cols=294 Identities=14% Similarity=0.117 Sum_probs=185.4
Q ss_pred HHHHHhccHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCC--CHhHHHHHHHH
Q 047932 113 HSILINCRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKP--DTVTYNTIIDG 190 (598)
Q Consensus 113 ~~~ll~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~--~~~~~~~li~~ 190 (598)
.+.+++.+.+.|...|-+|.+.+ +.+..+..+|.+.|-+.|..+.|+.+.+.+..+.. .+- .......|..-
T Consensus 43 lNfLLs~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spd-----lT~~qr~lAl~qL~~D 116 (389)
T COG2956 43 LNFLLSNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPD-----LTFEQRLLALQQLGRD 116 (389)
T ss_pred HHHHhhcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCC-----CchHHHHHHHHHHHHH
Confidence 45566667778888888877653 22455667888889899999999999888877531 111 12234556777
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----hhHHHHHHHHHhCCC
Q 047932 191 VCKEGFVDKAMELFLQMKDENINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNV----VTFSVIVDELCKNGK 266 (598)
Q Consensus 191 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~ 266 (598)
|...|-+|+|+++|..+.+.+. .-......|+..|-...+|++|+++-+++.+.+..+.. ..|.-+...+....+
T Consensus 117 ym~aGl~DRAE~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~ 195 (389)
T COG2956 117 YMAAGLLDRAEDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSD 195 (389)
T ss_pred HHHhhhhhHHHHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhh
Confidence 8888888888888888877532 24556777888888888888888888888776544332 245555556666677
Q ss_pred HHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 047932 267 MEEASRLLDLMIQIGVHPNTFVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRK 346 (598)
Q Consensus 267 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 346 (598)
++.|..++.+..+.+.+ .+..-..+.+.+...|+++.|.+.++.+.+.+..--+.+...|..+|...|+.++....+.+
T Consensus 196 ~d~A~~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~ 274 (389)
T COG2956 196 VDRARELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRR 274 (389)
T ss_pred HHHHHHHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 77777777777765422 33344445566777777777777777777765444455566677777777777777777777
Q ss_pred HccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHc---CCHHHHHHHHHHHh
Q 047932 347 MLPKGIRPTVVTYSTLFLGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKN---GFVLEALELFCAIG 418 (598)
Q Consensus 347 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~ 418 (598)
+.+... ....-..+........-.+.|...+.+-+.. .|+...+..++...... |...+....++.|.
T Consensus 275 ~~~~~~--g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mv 345 (389)
T COG2956 275 AMETNT--GADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMV 345 (389)
T ss_pred HHHccC--CccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHH
Confidence 666532 2233333333334444455555555444443 46666666666554332 23344444444443
No 48
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.64 E-value=1.9e-15 Score=140.93 Aligned_cols=259 Identities=16% Similarity=0.161 Sum_probs=71.3
Q ss_pred CcccccCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhccHHHHH
Q 047932 46 GQGDINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCRIMEAA 125 (598)
Q Consensus 46 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~a~ 125 (598)
+..+.+.|++++|+++++........+.++..|..+.......++++.|+..|+++...+.
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~------------------- 75 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDK------------------- 75 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-------------------
Confidence 4445566666666666654433331113555555555555566666666666666654321
Q ss_pred HHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHH
Q 047932 126 ALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFL 205 (598)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 205 (598)
.+...+..++.. ...+++++|.++++...+.. ++...+..++..+.+.++++++.++++
T Consensus 76 ------------~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~--------~~~~~l~~~l~~~~~~~~~~~~~~~l~ 134 (280)
T PF13429_consen 76 ------------ANPQDYERLIQL-LQDGDPEEALKLAEKAYERD--------GDPRYLLSALQLYYRLGDYDEAEELLE 134 (280)
T ss_dssp ---------------------------------------------------------------H-HHHTT-HHHHHHHHH
T ss_pred ------------cccccccccccc-cccccccccccccccccccc--------cccchhhHHHHHHHHHhHHHHHHHHHH
Confidence 122233444444 45566666666655544332 334444555555556666666666665
Q ss_pred HHhhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCc
Q 047932 206 QMKDEN-INPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHP 284 (598)
Q Consensus 206 ~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 284 (598)
.+.... .+.+...|..+...+.+.|+.++|++.+++.++.. +.+......++..+...|+.+++..+++...+.. +.
T Consensus 135 ~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~ 212 (280)
T PF13429_consen 135 KLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PD 212 (280)
T ss_dssp HHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HT
T ss_pred HHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cC
Confidence 554321 23344555555555666666666666666655542 2234455555555555666665555555554432 23
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 047932 285 NTFVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKM 347 (598)
Q Consensus 285 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 347 (598)
|...+..+..++...|+.++|...|++..... +.|+.....+..++...|+.++|..+..++
T Consensus 213 ~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 213 DPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp SCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT---------------
T ss_pred HHHHHHHHHHHhcccccccccccccccccccc-cccccccccccccccccccccccccccccc
Confidence 44445555555555666666666666555532 335555555555555566666665555544
No 49
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.63 E-value=5.2e-14 Score=134.48 Aligned_cols=290 Identities=14% Similarity=0.032 Sum_probs=197.8
Q ss_pred CHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCChhhHHHHHHHHHhcCCHHHHHHH
Q 047932 266 KMEEASRLLDLMIQIGVHPNTFVYNTLMDGFCLTGRVNHAKELFVSMESNGC--MHDVVSYTTLINGYCKTKNVEEALNL 343 (598)
Q Consensus 266 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~ 343 (598)
+..+|...|..+... +.-+..+...+..+|...+++++|+++|+.+.+... -.+...|.+.+-.+.+ +-++.+
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHH
Confidence 456777777774443 233445666677888888888888888888776531 1155566665544322 222222
Q ss_pred HH-HHccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCC
Q 047932 344 YR-KMLPKGIRPTVVTYSTLFLGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKY 422 (598)
Q Consensus 344 ~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 422 (598)
+. .+... -+-.+.+|.++..+|.-+++.+.|++.|+++++.+ +....+|+.+.+-+.....++.|...|+.++...
T Consensus 409 Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~- 485 (638)
T KOG1126|consen 409 LAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD- 485 (638)
T ss_pred HHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-
Confidence 22 22222 12356788888888888888888888888888763 3367778888877888888888888888887543
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 047932 423 ELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTI 502 (598)
Q Consensus 423 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 502 (598)
+-+...|-.+...|.+.++++.|.-.|+++.+.+.. +.+....+...+-+.|+.++|+++++++.... +-|+..-...
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~~~ 563 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKYHR 563 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHHHH
Confidence 224445666777888888888888888888875322 45555666677778888888888888887765 4466555566
Q ss_pred HHHHHhcCCccccchhHHHHHHHhcccCCCCCChHHHHH----HHHHhCCCCCChhhHHHhhhcCccccchhhH
Q 047932 503 MLGFIRNNETSKSSRGKLMSQMSSCWSMCFQPKTLICSI----SIMLQKDMSPGDTMFSTALLMDPDCSCDLES 572 (598)
Q Consensus 503 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~----~~~~~~~~~~a~~~~~~~l~~~P~~~~~~~~ 572 (598)
+..+...+++++|+. .++++.+ +.|+.....+ .+...|+.+.|...|--+..+||.-..+.++
T Consensus 564 ~~il~~~~~~~eal~--~LEeLk~-----~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~i~~k 630 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQ--ELEELKE-----LVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQIQIK 630 (638)
T ss_pred HHHHHhhcchHHHHH--HHHHHHH-----hCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccchhhHH
Confidence 667777888888888 8888874 4677655544 5666788888888888888888876654433
No 50
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.63 E-value=5.5e-10 Score=106.58 Aligned_cols=528 Identities=11% Similarity=0.066 Sum_probs=344.9
Q ss_pred HHHHhhhhhhcchhHHHHHHHhhccCCcccccCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 047932 20 LKESLRLTVKDGASIEKFLKERSKSSGQGDINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFK 99 (598)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 99 (598)
.+.+++.+..+..-....+..+....-....-...++..-..|++++..-.. -+..|...++.+.++|+...-+..|+
T Consensus 49 YERal~~lp~sykiW~~YL~~R~~~vk~~~~T~~~~~~vn~c~er~lv~mHk--mpRIwl~Ylq~l~~Q~~iT~tR~tfd 126 (835)
T KOG2047|consen 49 YERALKELPGSYKIWYDYLKARRAQVKHLCPTDPAYESVNNCFERCLVFMHK--MPRIWLDYLQFLIKQGLITRTRRTFD 126 (835)
T ss_pred HHHHHHHCCCchHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHhc--CCHHHHHHHHHHHhcchHHHHHHHHH
Confidence 3455555555555555666555554433333344455666666666553222 45699999999999999999999998
Q ss_pred HHHhC-CCCCCHHhHHHHHhc-----cHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 047932 100 RLNST-GLFPDLYTHSILINC-----RIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEF 173 (598)
Q Consensus 100 ~~~~~-~~~p~~~~~~~ll~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 173 (598)
+++.. .+.-....|...+.. -++-+..++++.++. ++..-+-.+..+++.++.++|.+.+...+......
T Consensus 127 rALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~ 202 (835)
T KOG2047|consen 127 RALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFV 202 (835)
T ss_pred HHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhh
Confidence 87654 112222334444433 677899999999876 33446778899999999999999999988765333
Q ss_pred ccccCCCHhHHHHHHHHHHhcCCHH---HHHHHHHHHhhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 047932 174 GVVCKPDTVTYNTIIDGVCKEGFVD---KAMELFLQMKDENINPNV--VTYNSLIHCFSHADDWNEAKRLFIKMMDQGVH 248 (598)
Q Consensus 174 ~~~~~~~~~~~~~li~~~~~~g~~~---~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 248 (598)
+-..+.+...|.-+.+...++-+.- ....+++.+... -+|. ..|++|...|.+.|.+++|.++|++.+.. .
T Consensus 203 sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~--v 278 (835)
T KOG2047|consen 203 SKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQT--V 278 (835)
T ss_pred hhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--h
Confidence 3334566777877777776654433 234455555443 2343 47899999999999999999999998875 2
Q ss_pred CCHhhHHHHHHHHHhCCC----------------------HHHHHHHHHHHHhcCC-----------CcCHHHHHHHHHH
Q 047932 249 PNVVTFSVIVDELCKNGK----------------------MEEASRLLDLMIQIGV-----------HPNTFVYNTLMDG 295 (598)
Q Consensus 249 ~~~~~~~~l~~~~~~~g~----------------------~~~a~~~~~~~~~~~~-----------~~~~~~~~~ll~~ 295 (598)
.+..-|+.+.+.|+.... ++-...-|+.+..... +.+...|..-+.
T Consensus 279 ~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~- 357 (835)
T KOG2047|consen 279 MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK- 357 (835)
T ss_pred eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh-
Confidence 234444444444443211 2222333333333210 111222222222
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCC------ChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCC---HHHHHHHHHHH
Q 047932 296 FCLTGRVNHAKELFVSMESNGCMH------DVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPT---VVTYSTLFLGL 366 (598)
Q Consensus 296 ~~~~g~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~ 366 (598)
+..|+..+-...+.++...- .| -...|..+...|-..|+.+.|..+|++......+.- ..+|......-
T Consensus 358 -l~e~~~~~~i~tyteAv~~v-dP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemE 435 (835)
T KOG2047|consen 358 -LYEGNAAEQINTYTEAVKTV-DPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEME 435 (835)
T ss_pred -hhcCChHHHHHHHHHHHHcc-CcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHH
Confidence 23566777777787776541 11 234588889999999999999999999987643321 34566666666
Q ss_pred HhcCCHHHHHHHHHHHhhCC-----------CCc------CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHH
Q 047932 367 FEVHQVEHALKLFDEMQHND-----------VAA------DTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISY 429 (598)
Q Consensus 367 ~~~~~~~~a~~~~~~~~~~~-----------~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 429 (598)
.+..+++.|.++++.+.... .++ +..+|...++..-..|-++....+|+++++..+. ++.+.
T Consensus 436 lrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii 514 (835)
T KOG2047|consen 436 LRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQII 514 (835)
T ss_pred HhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHH
Confidence 77889999999998875421 111 2234555566666788999999999999987644 66666
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHH--HHHHHH
Q 047932 430 SCLIDGLCKIGKLETAWELFQSLSRVGLLPNV-VTYNIMIHGLCN---DGQMDKAHDLFLDMEAKGVEPDCV--IFNTIM 503 (598)
Q Consensus 430 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~p~~~--~~~~l~ 503 (598)
......+-.+.-++++.++|++-+..-..|++ ..|+..+.-+.+ ....+.|..+|+++++ |.+|... .|....
T Consensus 515 ~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA 593 (835)
T KOG2047|consen 515 INYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYA 593 (835)
T ss_pred HHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHH
Confidence 66666677788899999999987765334553 467777766553 3478999999999999 6676543 222223
Q ss_pred HHHHhcCCccccchhHHHHHHHhcccCCCCCCh--HHHHHHHHH---hCCCCCChhhHHHhhhcCccccc
Q 047932 504 LGFIRNNETSKSSRGKLMSQMSSCWSMCFQPKT--LICSISIML---QKDMSPGDTMFSTALLMDPDCSC 568 (598)
Q Consensus 504 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~--~~~~~~~~~---~~~~~~a~~~~~~~l~~~P~~~~ 568 (598)
..--+.|....|+. +++++... +.+.. ..|+..+.. .-.+..-+.+|+++++.-|++..
T Consensus 594 ~lEEe~GLar~ams--iyerat~~----v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~ 657 (835)
T KOG2047|consen 594 KLEEEHGLARHAMS--IYERATSA----VKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKA 657 (835)
T ss_pred HHHHHhhHHHHHHH--HHHHHHhc----CCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHH
Confidence 33345788899999 99998755 44443 233332211 23667788999999999998766
No 51
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.63 E-value=3.9e-12 Score=110.94 Aligned_cols=222 Identities=14% Similarity=0.171 Sum_probs=129.4
Q ss_pred hcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH------HHHHHHHHH
Q 047932 152 RTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNV------VTYNSLIHC 225 (598)
Q Consensus 152 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~~l~~~ 225 (598)
-.++.++|.++|-+|.+.+ +....+..+|.+.|.+.|..|+|+.+.+.+.++ ||. .+...|..-
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d-------~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~D 116 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQED-------PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRD 116 (389)
T ss_pred hhcCcchHHHHHHHHHhcC-------chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHH
Confidence 3466777777777777654 344556667777777777777777777777664 232 133345566
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcCH----HHHHHHHHHHHhcCC
Q 047932 226 FSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNT----FVYNTLMDGFCLTGR 301 (598)
Q Consensus 226 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~g~ 301 (598)
|...|-+|.|+.+|..+.+.+ .--......|+..|-...+|++|++.-+++.+.+-.+.. ..|.-+...+....+
T Consensus 117 ym~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~ 195 (389)
T COG2956 117 YMAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSD 195 (389)
T ss_pred HHHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhh
Confidence 677777777777777766543 223345566677777777777777777766665433221 133444444445555
Q ss_pred HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 047932 302 VNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFEVHQVEHALKLFDE 381 (598)
Q Consensus 302 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 381 (598)
.+.|..++.+..+.+ +..+..-..+...+...|+++.|.+.++.+.+.++.--..+...+..+|...|+.++....+..
T Consensus 196 ~d~A~~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~ 274 (389)
T COG2956 196 VDRARELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRR 274 (389)
T ss_pred HHHHHHHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 666666666655543 2233344445555556666666666666655554333334444555555555555555555555
Q ss_pred HhhC
Q 047932 382 MQHN 385 (598)
Q Consensus 382 ~~~~ 385 (598)
+.+.
T Consensus 275 ~~~~ 278 (389)
T COG2956 275 AMET 278 (389)
T ss_pred HHHc
Confidence 5543
No 52
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.63 E-value=3e-13 Score=129.40 Aligned_cols=289 Identities=14% Similarity=0.061 Sum_probs=188.8
Q ss_pred CCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC--CCCHHhHHHHHhc-cHHHHHHHH
Q 047932 52 LITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGL--FPDLYTHSILINC-RIMEAAALF 128 (598)
Q Consensus 52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~p~~~~~~~ll~~-~~~~a~~~~ 128 (598)
+-+..+|+..|...-...++ ..-....++.+|...+++++|..+|+.+.+... --+...|.+.+-. +-+-++..+
T Consensus 332 ~y~~~~A~~~~~klp~h~~n--t~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~L 409 (638)
T KOG1126|consen 332 QYNCREALNLFEKLPSHHYN--TGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYL 409 (638)
T ss_pred HHHHHHHHHHHHhhHHhcCC--chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHH
Confidence 44457899999985454444 335566788899999999999999998876521 1234455555554 444444444
Q ss_pred HHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 047932 129 TKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMK 208 (598)
Q Consensus 129 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 208 (598)
.+-+-.--+-...+|.+++.+|.-+++.+.|++.|++..+.+ +....+|+.+..-+.....+|.|...|+..+
T Consensus 410 aq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-------p~faYayTLlGhE~~~~ee~d~a~~~fr~Al 482 (638)
T KOG1126|consen 410 AQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-------PRFAYAYTLLGHESIATEEFDKAMKSFRKAL 482 (638)
T ss_pred HHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-------CccchhhhhcCChhhhhHHHHhHHHHHHhhh
Confidence 432221113356677777777777777777777777777755 3356777777777777777777777777776
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcCHHH
Q 047932 209 DENINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFV 288 (598)
Q Consensus 209 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 288 (598)
..... +-.+|.-|...|.+.++++.|+-.|++..+.+ +.+......+...+.+.|+.++|+++++++...+.. |+..
T Consensus 483 ~~~~r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~ 559 (638)
T KOG1126|consen 483 GVDPR-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLC 559 (638)
T ss_pred cCCch-hhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-Cchh
Confidence 54111 22344445667777777777777777777654 335556666677777777777777777777766433 4444
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCC
Q 047932 289 YNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIR 353 (598)
Q Consensus 289 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 353 (598)
-...+..+...+++++|+..++++.+.- |.+...+..+...|.+.|+.+.|+.-|.-+...+++
T Consensus 560 ~~~~~~il~~~~~~~eal~~LEeLk~~v-P~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 560 KYHRASILFSLGRYVEALQELEELKELV-PQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPK 623 (638)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence 4445556666777777777777776652 445566666777777777777777777766665433
No 53
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=4.9e-11 Score=112.09 Aligned_cols=279 Identities=11% Similarity=-0.001 Sum_probs=211.0
Q ss_pred CHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 047932 250 NVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLIN 329 (598)
Q Consensus 250 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 329 (598)
+.........-+...+++.+..++.+.+.+.. ++....+..-|.++...|+..+-..+=.++.+.- |....+|-++.-
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~ 320 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGC 320 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHH
Confidence 34444455566777888999999998888764 4556666666778888888887777777777653 667888888888
Q ss_pred HHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHH
Q 047932 330 GYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLE 409 (598)
Q Consensus 330 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 409 (598)
.|...|+..+|.+.|.+....+.. =...|......++-.+..++|...+..+.+.- +.....+..+.--|.+.++++.
T Consensus 321 YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~kL 398 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNLKL 398 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccHHH
Confidence 888889999999999887765332 34577888888888899999998888777652 2233333445556788889999
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCC----CCHHHHHHHHHHHHhcCCHHHHHHH
Q 047932 410 ALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRV--GLL----PNVVTYNIMIHGLCNDGQMDKAHDL 483 (598)
Q Consensus 410 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~----p~~~~~~~l~~~~~~~g~~~~A~~~ 483 (598)
|..+|.++.... +-|+.+.+-+.-.....+.+.+|..+|+..+.. ... --..+++.|+.+|.+.+.+++|+..
T Consensus 399 Ae~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~ 477 (611)
T KOG1173|consen 399 AEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDY 477 (611)
T ss_pred HHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHH
Confidence 999999888664 557888888888888888899999988877631 011 1234678888889999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCccccchhHHHHHHHhcccCCCCCChHHHHH
Q 047932 484 FLDMEAKGVEPDCVIFNTIMLGFIRNNETSKSSRGKLMSQMSSCWSMCFQPKTLICSI 541 (598)
Q Consensus 484 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~ 541 (598)
+++.+... +.+..++.+++-+|...|+++.|+. .|.+.+ .+.|+..+...
T Consensus 478 ~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid--~fhKaL-----~l~p~n~~~~~ 527 (611)
T KOG1173|consen 478 YQKALLLS-PKDASTHASIGYIYHLLGNLDKAID--HFHKAL-----ALKPDNIFISE 527 (611)
T ss_pred HHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHH--HHHHHH-----hcCCccHHHHH
Confidence 99988865 6688888888888999999999999 999888 66888765544
No 54
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.61 E-value=7.2e-12 Score=112.84 Aligned_cols=287 Identities=11% Similarity=0.088 Sum_probs=180.6
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHH
Q 047932 229 ADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTLMDGFCLTGRVNHAKEL 308 (598)
Q Consensus 229 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 308 (598)
.|+|.+|+++..+-.+.+-. ....|..-+++.-..|+.+.+-.++.++.+..-.++....-+..+.....|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 46666666666665554322 22233334445556666666666666665543334444555555666666666666666
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHH
Q 047932 309 FVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTV-------VTYSTLFLGLFEVHQVEHALKLFDE 381 (598)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~ 381 (598)
+.++.+.+ +...........+|.+.|++.....++..+.+.+.-.+. .+|..+++-....+..+.-...++.
T Consensus 176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 66666554 345555666666666666666666666666665544332 3445555555555555555556655
Q ss_pred HhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH
Q 047932 382 MQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNV 461 (598)
Q Consensus 382 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 461 (598)
..+. ...++..-..++.-+.++|+.++|.++..+..+.+..|. -...-.+.+-++.+.-++..++.... .+.+.
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~-h~~~p 328 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQ-HPEDP 328 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHh-CCCCh
Confidence 5443 244566666777778888888888888888877765554 12223345667777777777766554 22344
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccccchhHHHHHHHhc
Q 047932 462 VTYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFIRNNETSKSSRGKLMSQMSSC 527 (598)
Q Consensus 462 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 527 (598)
..+.+|...|.+.+.|.+|...|+...+. .|+..+|..+..++.+.|++.+|.+ ..++....
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~--~r~e~L~~ 390 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQ--VRREALLL 390 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHH--HHHHHHHH
Confidence 66777888888888888888888877764 5788888888888888888888888 77776643
No 55
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=4.4e-11 Score=112.40 Aligned_cols=287 Identities=13% Similarity=0.094 Sum_probs=228.9
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcCHHHHHHH
Q 047932 213 NPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTL 292 (598)
Q Consensus 213 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 292 (598)
.-+.........-+...+++.+..++++.+.+. .++....+..-+.++...|+..+-..+=.++++. .+....+|-++
T Consensus 241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aV 318 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAV 318 (611)
T ss_pred hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhH
Confidence 335555666667788899999999999999887 4666677777778999999998888888888776 34467789999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHhcCCH
Q 047932 293 MDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFEVHQV 372 (598)
Q Consensus 293 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 372 (598)
..-|...|+.++|.+.|.+....+ +.-...|-.+...|.-.|..++|...+..+-+. ++-....+.-+..-|.+.++.
T Consensus 319 g~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~ 396 (611)
T KOG1173|consen 319 GCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNL 396 (611)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccH
Confidence 999999999999999999987664 234567999999999999999999999877654 111222233455568889999
Q ss_pred HHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhC------CCCCCHHHHHHHHHHHHHcCCHHHHH
Q 047932 373 EHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNS------KYELDIISYSCLIDGLCKIGKLETAW 446 (598)
Q Consensus 373 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~A~ 446 (598)
..|.+.|.++.... |.|+...+.+.-.....+.+.+|..+|+..+.. .......+++.|..+|.+.+++++|+
T Consensus 397 kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI 475 (611)
T KOG1173|consen 397 KLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAI 475 (611)
T ss_pred HHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHH
Confidence 99999999998864 678889998888888899999999999987621 11124557899999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 047932 447 ELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFI 507 (598)
Q Consensus 447 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 507 (598)
..+++.+... +.+..++.++.-.|...|+++.|++.|.+.+. +.|+..+...++..+.
T Consensus 476 ~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 476 DYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLAI 533 (611)
T ss_pred HHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHHH
Confidence 9999998863 44788999999999999999999999999986 5677766666655443
No 56
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.58 E-value=4e-11 Score=105.97 Aligned_cols=447 Identities=13% Similarity=0.136 Sum_probs=256.4
Q ss_pred cccCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhc-----cHHH
Q 047932 49 DINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINC-----RIME 123 (598)
Q Consensus 49 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~-----~~~~ 123 (598)
++...|+..|+.+++-....+.. -....-..++..+...|++++|...|..+..... ++...+..+..+ .+.+
T Consensus 32 fls~rDytGAislLefk~~~~~E-EE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~-~~~el~vnLAcc~FyLg~Y~e 109 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNLDRE-EEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDD-APAELGVNLACCKFYLGQYIE 109 (557)
T ss_pred HHhcccchhHHHHHHHhhccchh-hhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCC-CCcccchhHHHHHHHHHHHHH
Confidence 34567789999998877643322 1112333456677789999999999998876542 332222222221 4555
Q ss_pred HHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHH
Q 047932 124 AAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMEL 203 (598)
Q Consensus 124 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 203 (598)
|..+-.+.. .+...-..+...-.+.|+-++-..+.+.+.. ....-.+|.........+.+|+++
T Consensus 110 A~~~~~ka~-----k~pL~~RLlfhlahklndEk~~~~fh~~LqD-----------~~EdqLSLAsvhYmR~HYQeAIdv 173 (557)
T KOG3785|consen 110 AKSIAEKAP-----KTPLCIRLLFHLAHKLNDEKRILTFHSSLQD-----------TLEDQLSLASVHYMRMHYQEAIDV 173 (557)
T ss_pred HHHHHhhCC-----CChHHHHHHHHHHHHhCcHHHHHHHHHHHhh-----------hHHHHHhHHHHHHHHHHHHHHHHH
Confidence 544433332 1233334445555566666555555444432 123334445544445567778888
Q ss_pred HHHHhhCCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCC
Q 047932 204 FLQMKDENINPNVVTYN-SLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGV 282 (598)
Q Consensus 204 ~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 282 (598)
+.++...+ |+-...| .+.-+|.+..-++-+.+++...++. ++.++...+..+....+.=+-..|.+-.+.+...+-
T Consensus 174 YkrvL~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~ 250 (557)
T KOG3785|consen 174 YKRVLQDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNID 250 (557)
T ss_pred HHHHHhcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccc
Confidence 87777642 2333333 2445667777777777777776665 343444444444333333233334444444443321
Q ss_pred CcCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHH
Q 047932 283 HPNTFVYNTLMDGFCLT-----GRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVV 357 (598)
Q Consensus 283 ~~~~~~~~~ll~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 357 (598)
.. ...+.-.++. ..-+.|++++-.+.+. -+..-..|+-.|.++++..+|..+.+++... .|-.
T Consensus 251 ~~-----~~f~~~l~rHNLVvFrngEgALqVLP~L~~~----IPEARlNL~iYyL~q~dVqeA~~L~Kdl~Pt--tP~E- 318 (557)
T KOG3785|consen 251 QE-----YPFIEYLCRHNLVVFRNGEGALQVLPSLMKH----IPEARLNLIIYYLNQNDVQEAISLCKDLDPT--TPYE- 318 (557)
T ss_pred cc-----chhHHHHHHcCeEEEeCCccHHHhchHHHhh----ChHhhhhheeeecccccHHHHHHHHhhcCCC--ChHH-
Confidence 11 1112222222 2345666666665544 2333445666788899999999888876543 2222
Q ss_pred HHHHHHHHHHhcC-------CHHHHHHHHHHHhhCCCCcC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHH
Q 047932 358 TYSTLFLGLFEVH-------QVEHALKLFDEMQHNDVAAD-TYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISY 429 (598)
Q Consensus 358 ~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 429 (598)
|..-.-.+...| ...-|...|+-.-..+..-| ..--..+..++.-..++++.+.+++.+...-...|.+.+
T Consensus 319 -yilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~ 397 (557)
T KOG3785|consen 319 -YILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL 397 (557)
T ss_pred -HHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh
Confidence 222222222222 34455666655544443333 223345666677777888888888888765444444444
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHH
Q 047932 430 SCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNI-MIHGLCNDGQMDKAHDLFLDMEAKGVEPDCVIF-NTIMLGFI 507 (598)
Q Consensus 430 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~-~~l~~~~~ 507 (598)
.+.++++..|.+.+|.++|-++....++ |..+|.+ |.++|.+.|..+.|..++-++.. +-+..+. ..+..-|.
T Consensus 398 -N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CY 472 (557)
T KOG3785|consen 398 -NLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCY 472 (557)
T ss_pred -HHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHH
Confidence 4788899999999999999887665444 4555554 55788899999988877654432 3333333 33446688
Q ss_pred hcCCccccchhHHHHHHHhcccCCCCCChHHHHH
Q 047932 508 RNNETSKSSRGKLMSQMSSCWSMCFQPKTLICSI 541 (598)
Q Consensus 508 ~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~ 541 (598)
+.+.+--|.+ .|..+. .+.|+++.|..
T Consensus 473 k~~eFyyaaK--AFd~lE-----~lDP~pEnWeG 499 (557)
T KOG3785|consen 473 KANEFYYAAK--AFDELE-----ILDPTPENWEG 499 (557)
T ss_pred HHHHHHHHHH--hhhHHH-----ccCCCccccCC
Confidence 8888877777 777776 45788888865
No 57
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.56 E-value=7.7e-11 Score=106.35 Aligned_cols=293 Identities=12% Similarity=0.084 Sum_probs=232.5
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHH
Q 047932 193 KEGFVDKAMELFLQMKDENINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASR 272 (598)
Q Consensus 193 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 272 (598)
-.|++.+|+++..+..+.+-. ....|..-+.+--..|+.+.+-.++.+..+..-.++....-...+.....|++..|..
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 379999999999998877544 4455666677788899999999999999886445566677778888999999999999
Q ss_pred HHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChh-------hHHHHHHHHHhcCCHHHHHHHHH
Q 047932 273 LLDLMIQIGVHPNTFVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVV-------SYTTLINGYCKTKNVEEALNLYR 345 (598)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~A~~~~~ 345 (598)
-+.++...+ +.++.+......+|.+.|++.....++..+.+.+.-.+.. +|..++.-....+..+.-...|+
T Consensus 175 ~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~ 253 (400)
T COG3071 175 NVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK 253 (400)
T ss_pred HHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 999998875 3477888899999999999999999999999988655543 45556655555555555555565
Q ss_pred HHccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCC
Q 047932 346 KMLPKGIRPTVVTYSTLFLGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELD 425 (598)
Q Consensus 346 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 425 (598)
....+ .+-++.....++.-+.+.|+.++|.++..+..+.+..+.. ...-.+.+-++.+.-++..+...+.. +.+
T Consensus 254 ~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~h-~~~ 327 (400)
T COG3071 254 NQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQH-PED 327 (400)
T ss_pred hccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHhhcCCCCchHHHHHHHHHHHhC-CCC
Confidence 55443 3446667778888899999999999999999988765552 12224567788888777777776553 446
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 047932 426 IISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPD 495 (598)
Q Consensus 426 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 495 (598)
+..+.+|...|.+.+.+.+|...|+...+ ..|+..+|+.+..++.+.|+..+|.+..++.+..-.+|+
T Consensus 328 p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~ 395 (400)
T COG3071 328 PLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREALLLTRQPN 395 (400)
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCC
Confidence 78899999999999999999999998887 478999999999999999999999999998875433443
No 58
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=2.1e-09 Score=97.29 Aligned_cols=298 Identities=14% Similarity=0.062 Sum_probs=200.4
Q ss_pred HhCCCHHHHHHHHHHHHhcC-CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHH
Q 047932 262 CKNGKMEEASRLLDLMIQIG-VHPNTFVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEA 340 (598)
Q Consensus 262 ~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 340 (598)
+-.++...+...+-.+.... ++.|......+..++...|+.++|+..|+.....+ +-+........-.+.+.|+++..
T Consensus 207 ~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d-py~i~~MD~Ya~LL~~eg~~e~~ 285 (564)
T KOG1174|consen 207 MFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN-PDNVEAMDLYAVLLGQEGGCEQD 285 (564)
T ss_pred HHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC-hhhhhhHHHHHHHHHhccCHhhH
Confidence 33455555555444443332 45567778888888888888888888888877653 11222233333445667777777
Q ss_pred HHHHHHHccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhC
Q 047932 341 LNLYRKMLPKGIRPTVVTYSTLFLGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNS 420 (598)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 420 (598)
..+...+....- -....|-.-+.......++..|+.+-.+.++.+ +.+...+-.-...+...|+.++|.-.|+.+...
T Consensus 286 ~~L~~~Lf~~~~-~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L 363 (564)
T KOG1174|consen 286 SALMDYLFAKVK-YTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQML 363 (564)
T ss_pred HHHHHHHHhhhh-cchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhc
Confidence 777776655321 122333333444456678888888888877764 345556666667778888888888888888765
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH-HHHH-hcCCHHHHHHHHHHHHHCCCCCC-HH
Q 047932 421 KYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMI-HGLC-NDGQMDKAHDLFLDMEAKGVEPD-CV 497 (598)
Q Consensus 421 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~-~~~~-~~g~~~~A~~~~~~~~~~~~~p~-~~ 497 (598)
. +-+..+|..|+.+|...|++.+|.-+-+...+. +..+..+...+. ..|. ...--++|.+++++.+.. .|+ ..
T Consensus 364 a-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~ 439 (564)
T KOG1174|consen 364 A-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTP 439 (564)
T ss_pred c-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHH
Confidence 3 446788888999999888888888877776654 334555555442 2333 333447788888887764 454 35
Q ss_pred HHHHHHHHHHhcCCccccchhHHHHHHHhcccCCCCCChHHHHH---HHHHhCCCCCChhhHHHhhhcCccccchhhHh
Q 047932 498 IFNTIMLGFIRNNETSKSSRGKLMSQMSSCWSMCFQPKTLICSI---SIMLQKDMSPGDTMFSTALLMDPDCSCDLESL 573 (598)
Q Consensus 498 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~---~~~~~~~~~~a~~~~~~~l~~~P~~~~~~~~l 573 (598)
....+...|...|..++++. ++++.... .||...... +....+.+++|...|..++.+||+|...+..+
T Consensus 440 AV~~~AEL~~~Eg~~~D~i~--LLe~~L~~-----~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl 511 (564)
T KOG1174|consen 440 AVNLIAELCQVEGPTKDIIK--LLEKHLII-----FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGL 511 (564)
T ss_pred HHHHHHHHHHhhCccchHHH--HHHHHHhh-----ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHH
Confidence 66777788888888889988 88888744 577655544 56677888888899999999999888876655
No 59
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.52 E-value=1.8e-09 Score=103.45 Aligned_cols=421 Identities=15% Similarity=0.134 Sum_probs=275.6
Q ss_pred CCcccccCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhH---HHHHhc--
Q 047932 45 SGQGDINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTH---SILINC-- 119 (598)
Q Consensus 45 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~---~~ll~~-- 119 (598)
-|..+...|+-++|....+..++.++. +...|..++-.+....++++|+.+|+.++.. .||.... .+++..
T Consensus 47 kGL~L~~lg~~~ea~~~vr~glr~d~~--S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~--~~dN~qilrDlslLQ~Qm 122 (700)
T KOG1156|consen 47 KGLTLNCLGKKEEAYELVRLGLRNDLK--SHVCWHVLGLLQRSDKKYDEAIKCYRNALKI--EKDNLQILRDLSLLQIQM 122 (700)
T ss_pred ccchhhcccchHHHHHHHHHHhccCcc--cchhHHHHHHHHhhhhhHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHH
Confidence 366677899999999999999998876 8899999999988889999999999999976 4554432 233333
Q ss_pred -cHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHH------HHHH
Q 047932 120 -RIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTII------DGVC 192 (598)
Q Consensus 120 -~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li------~~~~ 192 (598)
+++..........+.. +.....|..++.++.-.|++..|..+++...+... ..|+...+.... ....
T Consensus 123 Rd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~-----~~~s~~~~e~se~~Ly~n~i~~ 196 (700)
T KOG1156|consen 123 RDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQN-----TSPSKEDYEHSELLLYQNQILI 196 (700)
T ss_pred HhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-----cCCCHHHHHHHHHHHHHHHHHH
Confidence 5555555555555542 23456788999999999999999999999887652 245555554332 4556
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHH-HHHHHHHhCCCHHHHH
Q 047932 193 KEGFVDKAMELFLQMKDENINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFS-VIVDELCKNGKMEEAS 271 (598)
Q Consensus 193 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~a~ 271 (598)
+.|.++.|.+.+..-... +......-..-...+.+.+++++|..++..++.. .||...|. .+..++.+-.+.-++.
T Consensus 197 E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~l 273 (700)
T KOG1156|consen 197 EAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEAL 273 (700)
T ss_pred HcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHH
Confidence 788888888887765543 2223333445567788999999999999999987 45555444 4445554333333444
Q ss_pred -HHHHHHHhcCCCcCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHH----HHHHHH
Q 047932 272 -RLLDLMIQIGVHPNTFVYNTL-MDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEE----ALNLYR 345 (598)
Q Consensus 272 -~~~~~~~~~~~~~~~~~~~~l-l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----A~~~~~ 345 (598)
.+|....+. .|....-..+ +.......-.+..-.++..+.+.|+++- +..+...|-.....+- +..+..
T Consensus 274 k~ly~~ls~~--y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~v---f~dl~SLyk~p~k~~~le~Lvt~y~~ 348 (700)
T KOG1156|consen 274 KALYAILSEK--YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSV---FKDLRSLYKDPEKVAFLEKLVTSYQH 348 (700)
T ss_pred HHHHHHHhhc--CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCch---hhhhHHHHhchhHhHHHHHHHHHHHh
Confidence 555555443 1111111111 1111112223445566777777776543 3333333322221111 111111
Q ss_pred HHccCC----------CCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHH
Q 047932 346 KMLPKG----------IRPTVVT--YSTLFLGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALEL 413 (598)
Q Consensus 346 ~~~~~~----------~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 413 (598)
.+...| -+|.... +-.++..+-..|+++.|..+++.+..+. |.-...|..-.+.+...|++++|..+
T Consensus 349 ~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHT-PTliEly~~KaRI~kH~G~l~eAa~~ 427 (700)
T KOG1156|consen 349 SLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHT-PTLIELYLVKARIFKHAGLLDEAAAW 427 (700)
T ss_pred hcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC-chHHHHHHHHHHHHHhcCChHHHHHH
Confidence 121111 1444443 3456777889999999999999999873 33466677777889999999999999
Q ss_pred HHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH--------HHHHH--HHHHHhcCCHHHHHHH
Q 047932 414 FCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVV--------TYNIM--IHGLCNDGQMDKAHDL 483 (598)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~--------~~~~l--~~~~~~~g~~~~A~~~ 483 (598)
+++..+.+ .+|...-.--+....+..+.++|.++.....+.|. +.. .|..+ ..+|.+.|++..|++-
T Consensus 428 l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~--~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKk 504 (700)
T KOG1156|consen 428 LDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF--GAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKK 504 (700)
T ss_pred HHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc--chhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHH
Confidence 99998776 55777666777788889999999999999888764 222 23222 3457788888777766
Q ss_pred HHHH
Q 047932 484 FLDM 487 (598)
Q Consensus 484 ~~~~ 487 (598)
|...
T Consensus 505 fh~i 508 (700)
T KOG1156|consen 505 FHEI 508 (700)
T ss_pred HhhH
Confidence 5544
No 60
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.50 E-value=4.5e-09 Score=102.86 Aligned_cols=417 Identities=13% Similarity=0.041 Sum_probs=246.4
Q ss_pred CCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-
Q 047932 136 CEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINP- 214 (598)
Q Consensus 136 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~- 214 (598)
+.-|...|..|.-++.+.|+++.+.+.|++....- -.....|..+...|...|.-..|..+++........|
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-------~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps 391 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-------FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPS 391 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-------hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCC
Confidence 34466677777777777777777777777766532 3345677777777777777777777777665543223
Q ss_pred CHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHC--CC--CCCHhhHHHHHHHHHhCC-----------CHHHHHHHHHHHH
Q 047932 215 NVVTYNSLIHCFS-HADDWNEAKRLFIKMMDQ--GV--HPNVVTFSVIVDELCKNG-----------KMEEASRLLDLMI 278 (598)
Q Consensus 215 ~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~--~~--~~~~~~~~~l~~~~~~~g-----------~~~~a~~~~~~~~ 278 (598)
+...+-..-..|. +.+..+++++.-.+++.. +. ......|..+.-+|...- ...++++.+++..
T Consensus 392 ~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av 471 (799)
T KOG4162|consen 392 DISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAV 471 (799)
T ss_pred cchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHH
Confidence 3333333333333 346666666666666552 11 112233444444443211 1345666777776
Q ss_pred hcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHHH
Q 047932 279 QIGVHPNTFVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVT 358 (598)
Q Consensus 279 ~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 358 (598)
+.+.. |+.+...+.--|+..++.+.|.+..++..+.+...+...|..+.-.+...+++.+|+.+.+.....-.. |...
T Consensus 472 ~~d~~-dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~-N~~l 549 (799)
T KOG4162|consen 472 QFDPT-DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD-NHVL 549 (799)
T ss_pred hcCCC-CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh-hhhh
Confidence 66432 333333344446667777777777777777655667777777777777777777777777766554111 1111
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCC-CcCHH-HHH--HHHHH----HHHcCCHHHHHHHHHHH-------------
Q 047932 359 YSTLFLGLFEVHQVEHALKLFDEMQHNDV-AADTY-IYN--TFIDG----LCKNGFVLEALELFCAI------------- 417 (598)
Q Consensus 359 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~-~~~--~l~~~----~~~~g~~~~A~~~~~~~------------- 417 (598)
...-+..-...++.+++......+...-- .+... +.. .+... ....++..+|......+
T Consensus 550 ~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~s 629 (799)
T KOG4162|consen 550 MDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGS 629 (799)
T ss_pred chhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhccc
Confidence 11112222335677777776666543100 00000 000 00000 00000111111111110
Q ss_pred ----hhCCC--CCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 047932 418 ----GNSKY--ELD------IISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFL 485 (598)
Q Consensus 418 ----~~~~~--~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 485 (598)
..... .|+ ...|......+.+.+..++|...+.+.... .+-....|......+...|.+.+|.+.|.
T Consensus 630 e~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~~EA~~af~ 708 (799)
T KOG4162|consen 630 ELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQLEEAKEAFL 708 (799)
T ss_pred ccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhhHHHHHHHH
Confidence 10001 122 123556667788889999999888888764 23345667777778888999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCccccchhHHHHHHHhcccCCCCCChHH-HHH---HHHHhCCCCCChhhHHHhhh
Q 047932 486 DMEAKGVEPDCVIFNTIMLGFIRNNETSKSSRGKLMSQMSSCWSMCFQPKTLI-CSI---SIMLQKDMSPGDTMFSTALL 561 (598)
Q Consensus 486 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~-~~~---~~~~~~~~~~a~~~~~~~l~ 561 (598)
.....+ |.+.....++..++.+.|+..-|..+-++..+.+ +.|+..- |.. +.+..|+.+.|...|..+++
T Consensus 709 ~Al~ld-P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr-----~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 709 VALALD-PDHVPSMTALAELLLELGSPRLAEKRSLLSDALR-----LDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred HHHhcC-CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHh-----hCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 998764 4456788899999999998766655457788874 4676544 433 67889999999999999999
Q ss_pred cCccccc
Q 047932 562 MDPDCSC 568 (598)
Q Consensus 562 ~~P~~~~ 568 (598)
+++.+|.
T Consensus 783 Le~S~PV 789 (799)
T KOG4162|consen 783 LEESNPV 789 (799)
T ss_pred hccCCCc
Confidence 9999886
No 61
>PRK12370 invasion protein regulator; Provisional
Probab=99.49 E-value=2.7e-11 Score=123.62 Aligned_cols=180 Identities=14% Similarity=0.030 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHH
Q 047932 122 MEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAM 201 (598)
Q Consensus 122 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 201 (598)
++|...++++.+.+ +.+..++..+..++...|++++|...|+++.+.+ |.+...+..+...+...|++++|.
T Consensus 321 ~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-------P~~~~a~~~lg~~l~~~G~~~eAi 392 (553)
T PRK12370 321 IKAKEHAIKATELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-------PISADIKYYYGWNLFMAGQLEEAL 392 (553)
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 34444444444443 1244555556666666666666666666666654 344555666666666666666666
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Q 047932 202 ELFLQMKDENINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIG 281 (598)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 281 (598)
..++++.+.+.. +...+..++..+...|++++|...++++.....+.+...+..+..++...|++++|...+.++....
T Consensus 393 ~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~ 471 (553)
T PRK12370 393 QTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE 471 (553)
T ss_pred HHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc
Confidence 666666654322 2222223333344456666666666665543212233344455555566666666666665554431
Q ss_pred CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047932 282 VHPNTFVYNTLMDGFCLTGRVNHAKELFVSME 313 (598)
Q Consensus 282 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 313 (598)
+.+....+.+...|...| +.|...++.+.
T Consensus 472 -~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll 500 (553)
T PRK12370 472 -ITGLIAVNLLYAEYCQNS--ERALPTIREFL 500 (553)
T ss_pred -chhHHHHHHHHHHHhccH--HHHHHHHHHHH
Confidence 112223333444444444 24554444443
No 62
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.49 E-value=2.4e-10 Score=101.11 Aligned_cols=429 Identities=14% Similarity=0.130 Sum_probs=274.4
Q ss_pred cccCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhc----cHHHH
Q 047932 49 DINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINC----RIMEA 124 (598)
Q Consensus 49 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~----~~~~a 124 (598)
....|+|++|+..|..+...+. ++...|-.++..+.-.|.+.+|..+-.++.+. +.....+... +-++-
T Consensus 67 ~fhLgdY~~Al~~Y~~~~~~~~--~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~-----pL~~RLlfhlahklndEk~ 139 (557)
T KOG3785|consen 67 YFHLGDYEEALNVYTFLMNKDD--APAELGVNLACCKFYLGQYIEAKSIAEKAPKT-----PLCIRLLFHLAHKLNDEKR 139 (557)
T ss_pred HHhhccHHHHHHHHHHHhccCC--CCcccchhHHHHHHHHHHHHHHHHHHhhCCCC-----hHHHHHHHHHHHHhCcHHH
Confidence 4578999999999998877543 47788888888888889999999988876543 2222222221 22222
Q ss_pred HHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHH-HHHHHHhcCCHHHHHHH
Q 047932 125 AALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNT-IIDGVCKEGFVDKAMEL 203 (598)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-li~~~~~~g~~~~A~~~ 203 (598)
+..|.+-.+. ...--.+|.......-.+.+|++++.+....+ |+-...|. +.-+|.+..-++-+.++
T Consensus 140 ~~~fh~~LqD----~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn--------~ey~alNVy~ALCyyKlDYydvsqev 207 (557)
T KOG3785|consen 140 ILTFHSSLQD----TLEDQLSLASVHYMRMHYQEAIDVYKRVLQDN--------PEYIALNVYMALCYYKLDYYDVSQEV 207 (557)
T ss_pred HHHHHHHHhh----hHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC--------hhhhhhHHHHHHHHHhcchhhhHHHH
Confidence 2223222221 22333455555555667899999999998865 44444444 34466788888888888
Q ss_pred HHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhC-----CCHHHHHHHHHHHH
Q 047932 204 FLQMKDENINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKN-----GKMEEASRLLDLMI 278 (598)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g~~~~a~~~~~~~~ 278 (598)
+.-..+. ++.+..+.|..+....+.=.-..|.+-.+.+...+-. . |- .+.-.++. .+-+.|++++--+.
T Consensus 208 l~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~-~---~~-f~~~l~rHNLVvFrngEgALqVLP~L~ 281 (557)
T KOG3785|consen 208 LKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQ-E---YP-FIEYLCRHNLVVFRNGEGALQVLPSLM 281 (557)
T ss_pred HHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccc-c---ch-hHHHHHHcCeEEEeCCccHHHhchHHH
Confidence 8887764 4445666666665555543334455555555554311 1 21 22233332 34577888887776
Q ss_pred hcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC-------CHHHHHHHHHHHccCC
Q 047932 279 QIGVHPNTFVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTK-------NVEEALNLYRKMLPKG 351 (598)
Q Consensus 279 ~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~A~~~~~~~~~~~ 351 (598)
+. -+..-..|+--|.+.++..+|..+.+++. |.++.-|-.-.-.+...| ...-|...|+-.-.++
T Consensus 282 ~~----IPEARlNL~iYyL~q~dVqeA~~L~Kdl~----PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa 353 (557)
T KOG3785|consen 282 KH----IPEARLNLIIYYLNQNDVQEAISLCKDLD----PTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESA 353 (557)
T ss_pred hh----ChHhhhhheeeecccccHHHHHHHHhhcC----CCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccc
Confidence 64 23344456667899999999999887765 223333322222233333 3455666666665554
Q ss_pred CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHH
Q 047932 352 IRPTV-VTYSTLFLGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYS 430 (598)
Q Consensus 352 ~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 430 (598)
..-|. ..-..+..++.-..++++.+..++.+...-...|...+ .+..+.+..|++.+|+++|-.+....++.+..-..
T Consensus 354 ~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s 432 (557)
T KOG3785|consen 354 LECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIKNKILYKS 432 (557)
T ss_pred cccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHH
Confidence 44333 33445666777778899999999888876444344444 57889999999999999999887665553444445
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 047932 431 CLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIM-IHGLCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFIRN 509 (598)
Q Consensus 431 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 509 (598)
.|.++|.+.++++.|+.++-++-. +.+..+...+ ..-|.+.+.+=-|-+.|+.+... .|++..|.
T Consensus 433 ~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l--DP~pEnWe--------- 498 (557)
T KOG3785|consen 433 MLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDELEIL--DPTPENWE--------- 498 (557)
T ss_pred HHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc--CCCccccC---------
Confidence 677899999999999888765532 2233444444 45678899999999999888764 68888774
Q ss_pred CCccccchhHHHHHHHhc
Q 047932 510 NETSKSSRGKLMSQMSSC 527 (598)
Q Consensus 510 g~~~~A~~~~~~~~~~~~ 527 (598)
|+.....- ++..+...
T Consensus 499 GKRGACaG--~f~~l~~~ 514 (557)
T KOG3785|consen 499 GKRGACAG--LFRQLANH 514 (557)
T ss_pred CccchHHH--HHHHHHcC
Confidence 33333344 66666544
No 63
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.49 E-value=2.8e-12 Score=111.86 Aligned_cols=230 Identities=13% Similarity=0.025 Sum_probs=186.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHhc
Q 047932 290 NTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFEV 369 (598)
Q Consensus 290 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 369 (598)
+.+.++|.+.|.+.+|++.|+..... .|-+.||..|...|.+..++..|+.++.+-.+.- +-|+....-+.+.+...
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhHHHHHHH
Confidence 56778899999999999999888877 5677788888899999999999999998887762 22444445566777888
Q ss_pred CCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 047932 370 HQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELF 449 (598)
Q Consensus 370 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 449 (598)
++.++|.++|+...+.. +.+......+...|.-.++++-|+.+|+++++.|.. ++..|+.+.-+|...++++-++.-|
T Consensus 304 ~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHH
Confidence 89999999999888764 556666667777788888999999999999988855 8888999999999999999999999
Q ss_pred HHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccccchhHHHHHHHhc
Q 047932 450 QSLSRVGLLPN--VVTYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFIRNNETSKSSRGKLMSQMSSC 527 (598)
Q Consensus 450 ~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 527 (598)
++....--.|+ ..+|..+.......|++..|.+.|+-.+..+ ..+...++.|.-.-.+.|+.++|.. +++.+...
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Ars--ll~~A~s~ 458 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARS--LLNAAKSV 458 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHH--HHHHhhhh
Confidence 88877533344 4578888888888899999999999888765 5567888888888889999999999 99988744
No 64
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.49 E-value=8.7e-09 Score=97.81 Aligned_cols=444 Identities=13% Similarity=0.079 Sum_probs=256.0
Q ss_pred cccCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhc----cHHHH
Q 047932 49 DINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINC----RIMEA 124 (598)
Q Consensus 49 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~----~~~~a 124 (598)
..+.|++++|.+...+++...|. +..++..-+.++++.++|++|+.+.+.-.... .-+...|....-. ..++|
T Consensus 22 ~~~~~e~e~a~k~~~Kil~~~pd--d~~a~~cKvValIq~~ky~~ALk~ikk~~~~~-~~~~~~fEKAYc~Yrlnk~Dea 98 (652)
T KOG2376|consen 22 HGKNGEYEEAVKTANKILSIVPD--DEDAIRCKVVALIQLDKYEDALKLIKKNGALL-VINSFFFEKAYCEYRLNKLDEA 98 (652)
T ss_pred hccchHHHHHHHHHHHHHhcCCC--cHhhHhhhHhhhhhhhHHHHHHHHHHhcchhh-hcchhhHHHHHHHHHcccHHHH
Confidence 34789999999999999999877 78888888889999999999997776543210 1111112211111 78888
Q ss_pred HHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCH--hHHHHHHHHHHhcCCHHHHHH
Q 047932 125 AALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDT--VTYNTIIDGVCKEGFVDKAME 202 (598)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~ 202 (598)
+..++-... .|..+...-...+.+.|++++|+.+|+.+.+.+ .++. ..-..++.+-. .-.+ +
T Consensus 99 lk~~~~~~~----~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~-------~dd~d~~~r~nl~a~~a----~l~~-~ 162 (652)
T KOG2376|consen 99 LKTLKGLDR----LDDKLLELRAQVLYRLERYDEALDIYQHLAKNN-------SDDQDEERRANLLAVAA----ALQV-Q 162 (652)
T ss_pred HHHHhcccc----cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-------CchHHHHHHHHHHHHHH----hhhH-H
Confidence 888873321 234466777888999999999999999998776 2222 22222222111 1111 1
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-------CCC------CHh-hHHHHHHHHHhCCCHH
Q 047932 203 LFLQMKDENINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQG-------VHP------NVV-TFSVIVDELCKNGKME 268 (598)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~------~~~-~~~~l~~~~~~~g~~~ 268 (598)
+.+..... ...+-..+......++..|++.+|+++++...+.+ -.- ... .-..+.-.+...|+..
T Consensus 163 ~~q~v~~v-~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ 241 (652)
T KOG2376|consen 163 LLQSVPEV-PEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTA 241 (652)
T ss_pred HHHhccCC-CcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchH
Confidence 22222221 11122233345566788999999999999883321 110 111 1223455667899999
Q ss_pred HHHHHHHHHHhcCCCcCHHHH----HHHHHHHHhcCCHH-HHHHHHHHHHHCCC----------CCChhhH-HHHHHHHH
Q 047932 269 EASRLLDLMIQIGVHPNTFVY----NTLMDGFCLTGRVN-HAKELFVSMESNGC----------MHDVVSY-TTLINGYC 332 (598)
Q Consensus 269 ~a~~~~~~~~~~~~~~~~~~~----~~ll~~~~~~g~~~-~a~~~~~~~~~~~~----------~~~~~~~-~~l~~~~~ 332 (598)
+|..++...++... +|.... |.++..-....=++ .++..++....... .-..... +.++..|
T Consensus 242 ea~~iy~~~i~~~~-~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~- 319 (652)
T KOG2376|consen 242 EASSIYVDIIKRNP-ADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF- 319 (652)
T ss_pred HHHHHHHHHHHhcC-CCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 99999999988753 344322 22222111111111 12222221111000 0011111 1222222
Q ss_pred hcCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHH
Q 047932 333 KTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLF--EVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEA 410 (598)
Q Consensus 333 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 410 (598)
.+..+.+.++....... .|.. .+..++..+. +...+..+..++...-+........+....+......|+++.|
T Consensus 320 -tnk~~q~r~~~a~lp~~--~p~~-~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A 395 (652)
T KOG2376|consen 320 -TNKMDQVRELSASLPGM--SPES-LFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVA 395 (652)
T ss_pred -hhhHHHHHHHHHhCCcc--CchH-HHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHH
Confidence 34445555555444332 2332 3333433322 2224677777777776654333455666777788889999999
Q ss_pred HHHHH--------HHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCCCC----HHHHHHHHHHHHhcCC
Q 047932 411 LELFC--------AIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRV--GLLPN----VVTYNIMIHGLCNDGQ 476 (598)
Q Consensus 411 ~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~----~~~~~~l~~~~~~~g~ 476 (598)
..++. .+.+.+.. +.+...+...+.+.++-+.|..++.+.... .-.+. ..++..++..-.+.|+
T Consensus 396 ~~il~~~~~~~~ss~~~~~~~--P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~ 473 (652)
T KOG2376|consen 396 LEILSLFLESWKSSILEAKHL--PGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGN 473 (652)
T ss_pred HHHHHHHhhhhhhhhhhhccC--hhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCc
Confidence 99988 55544433 344556677777777766676666665431 00111 2234444445557899
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccccchhHHHHHH
Q 047932 477 MDKAHDLFLDMEAKGVEPDCVIFNTIMLGFIRNNETSKSSRGKLMSQM 524 (598)
Q Consensus 477 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 524 (598)
.++|..+++++.+.+ ++|..+...++.+|++.. ++.|.. +-+.+
T Consensus 474 ~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~d-~eka~~--l~k~L 517 (652)
T KOG2376|consen 474 EEEASSLLEELVKFN-PNDTDLLVQLVTAYARLD-PEKAES--LSKKL 517 (652)
T ss_pred hHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhcC-HHHHHH--HhhcC
Confidence 999999999999865 788888888888887653 555555 44443
No 65
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.48 E-value=5.9e-09 Score=100.01 Aligned_cols=423 Identities=13% Similarity=0.084 Sum_probs=219.8
Q ss_pred cCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhccHHHHHHHHHH
Q 047932 51 NLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCRIMEAAALFTK 130 (598)
Q Consensus 51 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~a~~~~~~ 130 (598)
..++|...++..+.++...|.+++..+.. +-.+...|+-++|.+..+..+...+
T Consensus 19 E~kQYkkgLK~~~~iL~k~~eHgeslAmk--GL~L~~lg~~~ea~~~vr~glr~d~------------------------ 72 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILKKFPEHGESLAMK--GLTLNCLGKKEEAYELVRLGLRNDL------------------------ 72 (700)
T ss_pred HHHHHHhHHHHHHHHHHhCCccchhHHhc--cchhhcccchHHHHHHHHHHhccCc------------------------
Confidence 35667777777777777777644433333 3334455777777777776665422
Q ss_pred HHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 047932 131 LRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDE 210 (598)
Q Consensus 131 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 210 (598)
.+.+.|..++-.+....++++|+..|..+...+ +.|...|.-+.-.-.+.++++........+.+.
T Consensus 73 -------~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-------~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql 138 (700)
T KOG1156|consen 73 -------KSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-------KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL 138 (700)
T ss_pred -------ccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-------CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh
Confidence 234455555555555666666666666666554 445555555555555555555555555555543
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHhhHHHH------HHHHHhCCCHHHHHHHHHHHHhcCCC
Q 047932 211 NINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQG-VHPNVVTFSVI------VDELCKNGKMEEASRLLDLMIQIGVH 283 (598)
Q Consensus 211 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l------~~~~~~~g~~~~a~~~~~~~~~~~~~ 283 (598)
. +-....|..++.++.-.|+...|..+++...+.. -.|+...+... .......|..++|++.+..-... +.
T Consensus 139 ~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~ 216 (700)
T KOG1156|consen 139 R-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IV 216 (700)
T ss_pred h-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HH
Confidence 1 1133455555666666666666666666655542 12333333221 12334455556565555443322 11
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHH-HHHHHHhcCCHHHHH-HHHHHHccCCCCCCHHHHHH
Q 047932 284 PNTFVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTT-LINGYCKTKNVEEAL-NLYRKMLPKGIRPTVVTYST 361 (598)
Q Consensus 284 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~A~-~~~~~~~~~~~~~~~~~~~~ 361 (598)
.....-..-...+.+.++.++|..++..+.... ||...|.. +..++.+-.+.-++. .+|....+. .|....-..
T Consensus 217 Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~R 292 (700)
T KOG1156|consen 217 DKLAFEETKADLLMKLGQLEEAVKVYRRLLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRR 292 (700)
T ss_pred HHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--Ccccccchh
Confidence 111122233445566666666666666666652 33333333 333332222223333 444444332 111111111
Q ss_pred HHHHHHh-cCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCH---HH-HHHHHHHHhhC----------CCCCCH
Q 047932 362 LFLGLFE-VHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFV---LE-ALELFCAIGNS----------KYELDI 426 (598)
Q Consensus 362 l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~-A~~~~~~~~~~----------~~~~~~ 426 (598)
+-..... .+-.+....++..+.+.|+++- +..+...|-.-... ++ +..+...+... .-+|..
T Consensus 293 lplsvl~~eel~~~vdkyL~~~l~Kg~p~v---f~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~Ptt 369 (700)
T KOG1156|consen 293 LPLSVLNGEELKEIVDKYLRPLLSKGVPSV---FKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTT 369 (700)
T ss_pred ccHHHhCcchhHHHHHHHHHHHhhcCCCch---hhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchH
Confidence 1111111 1222333344455555554432 22222222111100 00 11111111111 014454
Q ss_pred HHH--HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 047932 427 ISY--SCLIDGLCKIGKLETAWELFQSLSRVGLLPNV-VTYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIM 503 (598)
Q Consensus 427 ~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 503 (598)
..| -.++..+-..|+++.|...++....+ .|+. ..|..-.+.+.+.|++++|..++++..+.+ .+|...-..-+
T Consensus 370 llWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcA 446 (700)
T KOG1156|consen 370 LLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCA 446 (700)
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHH
Confidence 433 45677788888899998888888874 5663 455555677888889999999988888776 55655555666
Q ss_pred HHHHhcCCccccchhHHHHHHHhc
Q 047932 504 LGFIRNNETSKSSRGKLMSQMSSC 527 (598)
Q Consensus 504 ~~~~~~g~~~~A~~~~~~~~~~~~ 527 (598)
.-..++++.++|.+ +.....+.
T Consensus 447 KYmLrAn~i~eA~~--~~skFTr~ 468 (700)
T KOG1156|consen 447 KYMLRANEIEEAEE--VLSKFTRE 468 (700)
T ss_pred HHHHHccccHHHHH--HHHHhhhc
Confidence 77778888888888 88887766
No 66
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.44 E-value=4e-09 Score=100.05 Aligned_cols=413 Identities=12% Similarity=0.074 Sum_probs=225.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 047932 146 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTYNSLIHC 225 (598)
Q Consensus 146 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 225 (598)
=++.+.+.|++++|.+...++...+ +.+...+..-+-++.+.++|++|+.+.+.-... ..+...+..-+.+
T Consensus 18 ~ln~~~~~~e~e~a~k~~~Kil~~~-------pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc 88 (652)
T KOG2376|consen 18 DLNRHGKNGEYEEAVKTANKILSIV-------PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYC 88 (652)
T ss_pred HHHHhccchHHHHHHHHHHHHHhcC-------CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHH
Confidence 3566778899999999999998864 566777888888889999999999666543321 1111111222444
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCC-CHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCc-CHHHHHHHHHHHHhcCCHH
Q 047932 226 FSHADDWNEAKRLFIKMMDQGVHP-NVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHP-NTFVYNTLMDGFCLTGRVN 303 (598)
Q Consensus 226 ~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~g~~~ 303 (598)
..+.+..++|+..++ |..+ +..+...-...+.+.|++++|+++|+.+.+.+... +...-..++..- -.-
T Consensus 89 ~Yrlnk~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~----a~l 159 (652)
T KOG2376|consen 89 EYRLNKLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVA----AAL 159 (652)
T ss_pred HHHcccHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH----Hhh
Confidence 567899999999887 2233 33466667778889999999999999987654321 011111111000 000
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHH---HHHHHhcCCHHHHHHHHHHHcc--------CCCC-CCHH-----HHHHHHHHH
Q 047932 304 HAKELFVSMESNGCMHDVVSYTTL---INGYCKTKNVEEALNLYRKMLP--------KGIR-PTVV-----TYSTLFLGL 366 (598)
Q Consensus 304 ~a~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~A~~~~~~~~~--------~~~~-~~~~-----~~~~l~~~~ 366 (598)
.+. +.+.... .| ..+|..+ ...+...|++.+|+++++.... .... -+.. .-..+.-.+
T Consensus 160 ~~~-~~q~v~~---v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVl 234 (652)
T KOG2376|consen 160 QVQ-LLQSVPE---VP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVL 234 (652)
T ss_pred hHH-HHHhccC---CC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHH
Confidence 000 1111110 11 1122222 2223344555555555554411 0000 0000 001122223
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCcCHH----HHHHHHH-------------------------------------------
Q 047932 367 FEVHQVEHALKLFDEMQHNDVAADTY----IYNTFID------------------------------------------- 399 (598)
Q Consensus 367 ~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~------------------------------------------- 399 (598)
...|+.++|..++...++.. ++|.. .-|.++.
T Consensus 235 Q~~Gqt~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~ 313 (652)
T KOG2376|consen 235 QLQGQTAEASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNN 313 (652)
T ss_pred HHhcchHHHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555444433 11211 1111110
Q ss_pred --HHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH--HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 047932 400 --GLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLC--KIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDG 475 (598)
Q Consensus 400 --~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 475 (598)
.....+..+.+.++...... ..|. ..+..++..+. +...+..+.+++....+....-...+...++......|
T Consensus 314 ~lL~l~tnk~~q~r~~~a~lp~--~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~g 390 (652)
T KOG2376|consen 314 ALLALFTNKMDQVRELSASLPG--MSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQG 390 (652)
T ss_pred HHHHHHhhhHHHHHHHHHhCCc--cCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcC
Confidence 00111222222222222211 1222 23333333322 22247778888888776532222445556677778999
Q ss_pred CHHHHHHHHH--------HHHHCCCCCCHHHHHHHHHHHHhcCCccccchhHHHHHHHhcccCCCC--CC--hHHHHH--
Q 047932 476 QMDKAHDLFL--------DMEAKGVEPDCVIFNTIMLGFIRNNETSKSSRGKLMSQMSSCWSMCFQ--PK--TLICSI-- 541 (598)
Q Consensus 476 ~~~~A~~~~~--------~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--p~--~~~~~~-- 541 (598)
+++.|++++. .+.+.+. .+.+...+...+.+.++.+.|.. ++.+++..+..... +. ...+.+
T Consensus 391 n~~~A~~il~~~~~~~~ss~~~~~~--~P~~V~aiv~l~~~~~~~~~a~~--vl~~Ai~~~~~~~t~s~~l~~~~~~aa~ 466 (652)
T KOG2376|consen 391 NPEVALEILSLFLESWKSSILEAKH--LPGTVGAIVALYYKIKDNDSASA--VLDSAIKWWRKQQTGSIALLSLMREAAE 466 (652)
T ss_pred CHHHHHHHHHHHhhhhhhhhhhhcc--ChhHHHHHHHHHHhccCCccHHH--HHHHHHHHHHHhcccchHHHhHHHHHhH
Confidence 9999999999 4444333 44556667777888888888888 88877654321111 11 111111
Q ss_pred HHHHhCCCCCChhhHHHhhhcCccccchhhHhhhhCCCCccchhhhee
Q 047932 542 SIMLQKDMSPGDTMFSTALLMDPDCSCDLESLIHNTDLDQDELAYVIT 589 (598)
Q Consensus 542 ~~~~~~~~~~a~~~~~~~l~~~P~~~~~~~~l~~~~~~~~~~~~~~~~ 589 (598)
+-..+|+.++|...++.+++.+|++...+..|+..+...+.+.+.++-
T Consensus 467 f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~d~eka~~l~ 514 (652)
T KOG2376|consen 467 FKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARLDPEKAESLS 514 (652)
T ss_pred HHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhcCHHHHHHHh
Confidence 334569999999999999999999999999998888877777765543
No 67
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.43 E-value=2.5e-11 Score=106.02 Aligned_cols=227 Identities=15% Similarity=0.092 Sum_probs=102.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcC
Q 047932 221 SLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTLMDGFCLTG 300 (598)
Q Consensus 221 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 300 (598)
.+.++|.+.|.+.+|.+.++..++. .|-+.||..|.+.|.+..+...|+.++.+-++. ++.|+....-+.+.+...+
T Consensus 228 Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 228 QMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHHH
Confidence 3445555555555555555554443 333444444555555555555555555554443 2223333333444444455
Q ss_pred CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 047932 301 RVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFEVHQVEHALKLFD 380 (598)
Q Consensus 301 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 380 (598)
+.++|.++|+...+.. +.++.....+...|.-.++++-|+..++++.+.|+. +...|+.+.-+|.-.+++|-++..|.
T Consensus 305 ~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred hHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 5555555555544432 223334444444444445555555555555554443 44445555555555555555554444
Q ss_pred HHhhCCCCcC--HHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 047932 381 EMQHNDVAAD--TYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLS 453 (598)
Q Consensus 381 ~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 453 (598)
++...-..|+ ..+|..+.......|++..|.+.|+-.+..+ ..+...++.|...-.+.|++++|..+++...
T Consensus 383 RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~ 456 (478)
T KOG1129|consen 383 RALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAK 456 (478)
T ss_pred HHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhh
Confidence 4443322121 2233333333444444444444444444332 2233344444444444444444444444433
No 68
>PRK12370 invasion protein regulator; Provisional
Probab=99.42 E-value=2.8e-10 Score=116.24 Aligned_cols=217 Identities=14% Similarity=0.062 Sum_probs=137.4
Q ss_pred cHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh---------cCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHH
Q 047932 120 RIMEAAALFTKLRVFGCEPDVFTYNTLINGLCR---------TGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDG 190 (598)
Q Consensus 120 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ 190 (598)
..++|+..|++..+.++. +...|..+..+|.. .+++++|...++++.+.+ |.+...+..+...
T Consensus 276 ~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-------P~~~~a~~~lg~~ 347 (553)
T PRK12370 276 SLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-------HNNPQALGLLGLI 347 (553)
T ss_pred HHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-------CCCHHHHHHHHHH
Confidence 466888888888876422 34455555554442 234677888888877765 5567777777777
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHH
Q 047932 191 VCKEGFVDKAMELFLQMKDENINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEA 270 (598)
Q Consensus 191 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 270 (598)
+...|++++|...|+++.+.+. .+...+..+..++...|++++|...+++..+.... +...+..++..+...|++++|
T Consensus 348 ~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA 425 (553)
T PRK12370 348 NTIHSEYIVGSLLFKQANLLSP-ISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDA 425 (553)
T ss_pred HHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHH
Confidence 7778888888888888777642 25566777777778888888888888887775322 222233344445567777777
Q ss_pred HHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHcc
Q 047932 271 SRLLDLMIQIGVHPNTFVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLP 349 (598)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 349 (598)
...++++.....+.+...+..+..++...|+.++|...+.++.... +.+....+.+...|+..| ++|...++.+.+
T Consensus 426 ~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 426 IRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred HHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 7777777654322234455666667777777777777777765442 223334444555555555 356665555443
No 69
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.42 E-value=3.4e-09 Score=104.44 Aligned_cols=284 Identities=12% Similarity=0.077 Sum_probs=199.7
Q ss_pred ccccCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhc--------
Q 047932 48 GDINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINC-------- 119 (598)
Q Consensus 48 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~-------- 119 (598)
++...|++++|++.++.....-.+ ........+..+.+.|+.++|...|+.+++. .|+...|...+..
T Consensus 13 il~e~g~~~~AL~~L~~~~~~I~D--k~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r--NPdn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 13 ILEEAGDYEEALEHLEKNEKQILD--KLAVLEKRAELLLKLGRKEEAEKIYRELIDR--NPDNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHCCCHHHHHHHHHhhhhhCCC--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHhhhccc
Confidence 345789999999999887665543 5667778899999999999999999999988 5777766544432
Q ss_pred ---cHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCh-hHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcC
Q 047932 120 ---RIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHT-IVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEG 195 (598)
Q Consensus 120 ---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 195 (598)
..+....+|+++...- |...+...+.-.+..-..+ ..+...+..+.+.| + +.+|+.|-..|....
T Consensus 89 ~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~Kg------v---PslF~~lk~Ly~d~~ 157 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKG------V---PSLFSNLKPLYKDPE 157 (517)
T ss_pred ccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcC------C---chHHHHHHHHHcChh
Confidence 3466677777776653 3333322222222221222 23445556666666 2 456666767776555
Q ss_pred CHHHHHHHHHHHhhC----C----------CCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HhhHHHHH
Q 047932 196 FVDKAMELFLQMKDE----N----------INPNV--VTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPN-VVTFSVIV 258 (598)
Q Consensus 196 ~~~~A~~~~~~~~~~----~----------~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~ 258 (598)
...-..+++...... + -+|+. .++..+...|...|++++|++.+++.++. .|+ +..|..-.
T Consensus 158 K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~Ka 235 (517)
T PF12569_consen 158 KAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKA 235 (517)
T ss_pred HHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHH
Confidence 555555666655432 1 12333 34566678888999999999999999987 444 66888889
Q ss_pred HHHHhCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhh------H--HHHHHH
Q 047932 259 DELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVS------Y--TTLING 330 (598)
Q Consensus 259 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~------~--~~l~~~ 330 (598)
+.+-+.|++.+|.+.++.....+.. |...-+-.+..+.+.|++++|.+++....+.+..|.... | .....+
T Consensus 236 rilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a 314 (517)
T PF12569_consen 236 RILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEA 314 (517)
T ss_pred HHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999987644 777777788889999999999999999887764332211 1 334678
Q ss_pred HHhcCCHHHHHHHHHHHcc
Q 047932 331 YCKTKNVEEALNLYRKMLP 349 (598)
Q Consensus 331 ~~~~~~~~~A~~~~~~~~~ 349 (598)
|.+.|++..|++.|..+..
T Consensus 315 ~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 315 YLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 8899999988887776654
No 70
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.41 E-value=2.5e-10 Score=103.88 Aligned_cols=199 Identities=15% Similarity=0.096 Sum_probs=119.5
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHH
Q 047932 140 VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTY 219 (598)
Q Consensus 140 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 219 (598)
...+..+...+...|++++|.+.++++.... +.+...+..+...+...|++++|.+.+++...... .+...+
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~ 102 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-------PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP-NNGDVL 102 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHH
Confidence 4456666777777777777777777776654 34456666677777777777777777777666532 245566
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHh
Q 047932 220 NSLIHCFSHADDWNEAKRLFIKMMDQGVH-PNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTLMDGFCL 298 (598)
Q Consensus 220 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 298 (598)
..+...+...|++++|.+.+++....... .....+..+..++...|++++|...+++..+.. +.+...+..+...+..
T Consensus 103 ~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~ 181 (234)
T TIGR02521 103 NNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYL 181 (234)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHH
Confidence 66666677777777777777776653211 123344555566666666666666666666543 2234455555566666
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHc
Q 047932 299 TGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKML 348 (598)
Q Consensus 299 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 348 (598)
.|++++|...+++.... .+.+...+..++..+...|+.++|..+.+.+.
T Consensus 182 ~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 182 RGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred cCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 66666666666665554 23344444455555555666666665555443
No 71
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.39 E-value=5.6e-09 Score=102.20 Aligned_cols=126 Identities=17% Similarity=0.034 Sum_probs=63.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhc
Q 047932 396 TFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPN-VVTYNIMIHGLCND 474 (598)
Q Consensus 396 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~ 474 (598)
.....+.+.+..++|...+.+..+.. +.....|......+...|..++|.+.|...... .|+ +....++..++.+.
T Consensus 655 laa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l--dP~hv~s~~Ala~~lle~ 731 (799)
T KOG4162|consen 655 LAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALAL--DPDHVPSMTALAELLLEL 731 (799)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc--CCCCcHHHHHHHHHHHHh
Confidence 34444455555555555555444332 233444444445555555555555555555442 233 33445555555555
Q ss_pred CCHHHHHH--HHHHHHHCCCCCCHHHHHHHHHHHHhcCCccccchhHHHHHHHhc
Q 047932 475 GQMDKAHD--LFLDMEAKGVEPDCVIFNTIMLGFIRNNETSKSSRGKLMSQMSSC 527 (598)
Q Consensus 475 g~~~~A~~--~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 527 (598)
|+...|.. ++..+++.+ +-+...|..+...+.+.|+.++|.. .|....+.
T Consensus 732 G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aae--cf~aa~qL 783 (799)
T KOG4162|consen 732 GSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAE--CFQAALQL 783 (799)
T ss_pred CCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHH--HHHHHHhh
Confidence 55544444 555555544 4455555555555555555555555 55555444
No 72
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.39 E-value=5.6e-10 Score=101.61 Aligned_cols=196 Identities=14% Similarity=0.057 Sum_probs=86.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHHH
Q 047932 288 VYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLF 367 (598)
Q Consensus 288 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 367 (598)
.+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.+++....... +...+..+...+.
T Consensus 33 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~ 110 (234)
T TIGR02521 33 IRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGTFLC 110 (234)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHH
Confidence 33444444444455555555554444332 223334444444444455555555555444443221 2333444444444
Q ss_pred hcCCHHHHHHHHHHHhhCCC-CcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 047932 368 EVHQVEHALKLFDEMQHNDV-AADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAW 446 (598)
Q Consensus 368 ~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 446 (598)
..|++++|...+.++..... +.....+..+...+...|++++|...+++..... +.+...+..+...+...|++++|.
T Consensus 111 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~ 189 (234)
T TIGR02521 111 QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDAR 189 (234)
T ss_pred HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHHH
Confidence 44555555554444443211 1122233334444445555555555555444332 223334444445555555555555
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047932 447 ELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDM 487 (598)
Q Consensus 447 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 487 (598)
..+++..+. .+.+...+..++..+...|+.++|..+.+.+
T Consensus 190 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 190 AYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred HHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 555554443 1223333334444444455555555544444
No 73
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=9.9e-08 Score=86.76 Aligned_cols=314 Identities=14% Similarity=0.039 Sum_probs=220.1
Q ss_pred CCCCHHHHHHHHHHH--HhcCCHHHHHHHHHHHHHC-CCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcCHHH
Q 047932 212 INPNVVTYNSLIHCF--SHADDWNEAKRLFIKMMDQ-GVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFV 288 (598)
Q Consensus 212 ~~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 288 (598)
++|...+....+.++ +..++-..+...+-.+... -++-|......+..++...|+.++|+..|+.....+.- +...
T Consensus 190 ~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy-~i~~ 268 (564)
T KOG1174|consen 190 VPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPD-NVEA 268 (564)
T ss_pred cCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChh-hhhh
Confidence 344444444444443 3334444444444433322 25567778888899999999999999999988765311 2333
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHh
Q 047932 289 YNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFE 368 (598)
Q Consensus 289 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 368 (598)
.....-.+.+.|+.+....+...+.... ......|..-+.......+++.|+.+-++.++.+.. +...+..-...+..
T Consensus 269 MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~ 346 (564)
T KOG1174|consen 269 MDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIA 346 (564)
T ss_pred HHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHh
Confidence 3444455667888888888877776542 123444544455556678899999999988876443 55666666677888
Q ss_pred cCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHH-HHHH-HcCCHHHHH
Q 047932 369 VHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLI-DGLC-KIGKLETAW 446 (598)
Q Consensus 369 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~g~~~~A~ 446 (598)
.+++++|.-.|+.+.... |.+..+|..+++.|...|.+.+|...-+...+. ++.+..+...+. ..+. ...--++|.
T Consensus 347 ~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAK 424 (564)
T KOG1174|consen 347 LERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAK 424 (564)
T ss_pred ccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHH
Confidence 999999999999888763 557889999999999999999998877766643 234555555442 2222 233457899
Q ss_pred HHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccccchhHHHHHHH
Q 047932 447 ELFQSLSRVGLLPN-VVTYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFIRNNETSKSSRGKLMSQMS 525 (598)
Q Consensus 447 ~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 525 (598)
+++++... +.|+ ....+.+...|...|..+.++.++++.+.. .||....+.|...+...+.+++|.. .|..+.
T Consensus 425 kf~ek~L~--~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~--~y~~AL 498 (564)
T KOG1174|consen 425 KFAEKSLK--INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAME--YYYKAL 498 (564)
T ss_pred HHHHhhhc--cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHH--HHHHHH
Confidence 99988877 4666 345677788888999999999999998873 6888888999999999999999999 999998
Q ss_pred hcccCCCCCChHHHHH
Q 047932 526 SCWSMCFQPKTLICSI 541 (598)
Q Consensus 526 ~~~~~~~~p~~~~~~~ 541 (598)
+ +.|.+....-
T Consensus 499 r-----~dP~~~~sl~ 509 (564)
T KOG1174|consen 499 R-----QDPKSKRTLR 509 (564)
T ss_pred h-----cCccchHHHH
Confidence 4 4777654443
No 74
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.32 E-value=1e-09 Score=108.58 Aligned_cols=272 Identities=14% Similarity=0.157 Sum_probs=153.5
Q ss_pred HHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHH
Q 047932 127 LFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQ 206 (598)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 206 (598)
++..+...|+.|+..+|..+|.-||..|+.+.|- +|.-|.... .+.+...|+.++.+....++.+.+.
T Consensus 12 fla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ks------Lpv~e~vf~~lv~sh~~And~Enpk----- 79 (1088)
T KOG4318|consen 12 FLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKS------LPVREGVFRGLVASHKEANDAENPK----- 79 (1088)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhccc------ccccchhHHHHHhcccccccccCCC-----
Confidence 4556677789999999999999999999999998 999888877 6778889999999988888877655
Q ss_pred HhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhc-CCCcC
Q 047932 207 MKDENINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQI-GVHPN 285 (598)
Q Consensus 207 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~ 285 (598)
.|...+|..|..+|...||... .+..++ -...+...+...|.-..-..++..+.-. +.-||
T Consensus 80 ------ep~aDtyt~Ll~ayr~hGDli~-fe~veq-----------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpd 141 (1088)
T KOG4318|consen 80 ------EPLADTYTNLLKAYRIHGDLIL-FEVVEQ-----------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPD 141 (1088)
T ss_pred ------CCchhHHHHHHHHHHhccchHH-HHHHHH-----------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchh
Confidence 5788999999999999999766 222222 1112233333444333333333322111 11222
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC-CHHHHHHHHHHHccCCCCCCHHHHHHHHH
Q 047932 286 TFVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTK-NVEEALNLYRKMLPKGIRPTVVTYSTLFL 364 (598)
Q Consensus 286 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 364 (598)
.. ..+......|-++.+.+++..+...... . ....+++-+.... .+++-..+-....+ .|++.+|..++.
T Consensus 142 a~---n~illlv~eglwaqllkll~~~Pvsa~~-~--p~~vfLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~ 212 (1088)
T KOG4318|consen 142 AE---NAILLLVLEGLWAQLLKLLAKVPVSAWN-A--PFQVFLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLK 212 (1088)
T ss_pred HH---HHHHHHHHHHHHHHHHHHHhhCCccccc-c--hHHHHHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHH
Confidence 21 1222233344455555554443322100 0 0000122222111 12222222222222 355666666666
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcC
Q 047932 365 GLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIG 440 (598)
Q Consensus 365 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 440 (598)
+-...|+.+.|..++.+|.+.|++.+...|..++-+ .++..-++.+++.|...|+.|+..|+...+..+...|
T Consensus 213 ~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~ 285 (1088)
T KOG4318|consen 213 RALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNG 285 (1088)
T ss_pred HHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcch
Confidence 666666666666666666666655555544444433 4555555556666666666666666655555554433
No 75
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.31 E-value=2.3e-10 Score=112.98 Aligned_cols=86 Identities=15% Similarity=0.154 Sum_probs=54.7
Q ss_pred CcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 047932 388 AADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIM 467 (598)
Q Consensus 388 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 467 (598)
.+++.++.+.+.+-...|+.+.|..++.+|.+.|++.+.+-|..|+-+ .++...+..+++.|.+.|+.|+..|+.-.
T Consensus 201 ~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~ady 277 (1088)
T KOG4318|consen 201 APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADY 277 (1088)
T ss_pred CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHH
Confidence 456666666666666667777777777777666666666655555544 55666666666666666666666666666
Q ss_pred HHHHHhcCC
Q 047932 468 IHGLCNDGQ 476 (598)
Q Consensus 468 ~~~~~~~g~ 476 (598)
+..+...|.
T Consensus 278 vip~l~N~~ 286 (1088)
T KOG4318|consen 278 VIPQLSNGQ 286 (1088)
T ss_pred HHhhhcchh
Confidence 555555333
No 76
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.31 E-value=1.4e-08 Score=100.16 Aligned_cols=294 Identities=16% Similarity=0.107 Sum_probs=208.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhC--
Q 047932 187 IIDGVCKEGFVDKAMELFLQMKDENINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKN-- 264 (598)
Q Consensus 187 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-- 264 (598)
....+...|++++|++.++.-... +.............+.+.|+.++|..+|..+++.+ +.|..-|..+..+..-.
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhcc
Confidence 345667899999999999886654 44456677788899999999999999999999985 23444555555554222
Q ss_pred ---CCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHH
Q 047932 265 ---GKMEEASRLLDLMIQIGVHPNTFVYNTLMDGFCLTGRV-NHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEA 340 (598)
Q Consensus 265 ---g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 340 (598)
.+.+....+++++...- |.......+.-.+....++ ..+...+..+...|+|+ +|+.+-..|......+-.
T Consensus 88 ~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i 162 (517)
T PF12569_consen 88 LSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAII 162 (517)
T ss_pred cccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHH
Confidence 25677888888887653 3333333332222221223 34566677778887543 456666666655555555
Q ss_pred HHHHHHHccC----C----------CCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHc
Q 047932 341 LNLYRKMLPK----G----------IRPTV--VTYSTLFLGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKN 404 (598)
Q Consensus 341 ~~~~~~~~~~----~----------~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 404 (598)
.+++...... + -.|.. .++..+.+.|...|++++|+.+.++.+++. |..+..|..-...+-+.
T Consensus 163 ~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh~ 241 (517)
T PF12569_consen 163 ESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKHA 241 (517)
T ss_pred HHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHC
Confidence 5555554321 1 12333 344666788889999999999999999984 44588899999999999
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH------HH--HHHHHHHHhcCC
Q 047932 405 GFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVV------TY--NIMIHGLCNDGQ 476 (598)
Q Consensus 405 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~------~~--~~l~~~~~~~g~ 476 (598)
|++.+|...++.+...+. -|...-+-.+..+.+.|++++|.+++....+.+..|-.. .| ...+.+|.+.|+
T Consensus 242 G~~~~Aa~~~~~Ar~LD~-~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~ 320 (517)
T PF12569_consen 242 GDLKEAAEAMDEARELDL-ADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGD 320 (517)
T ss_pred CCHHHHHHHHHHHHhCCh-hhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999998763 488888888999999999999999999998765433221 22 334677889999
Q ss_pred HHHHHHHHHHHHH
Q 047932 477 MDKAHDLFLDMEA 489 (598)
Q Consensus 477 ~~~A~~~~~~~~~ 489 (598)
+..|++.|....+
T Consensus 321 ~~~ALk~~~~v~k 333 (517)
T PF12569_consen 321 YGLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHHHH
Confidence 9999887776654
No 77
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=4.9e-09 Score=98.49 Aligned_cols=395 Identities=13% Similarity=0.123 Sum_probs=230.5
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-HHHHHHHHHH
Q 047932 147 INGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPN-VVTYNSLIHC 225 (598)
Q Consensus 147 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~ 225 (598)
..+.+..|+++.|+.+|-+..... ++|.+.|..-..+|...|++++|++=-.+-.+. .|+ ...|.-...+
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~-------p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa 79 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLS-------PTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAA 79 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccC-------CCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHH
Confidence 456678899999999999998876 678899999999999999999998877666664 454 4478888888
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHH---HHHHHHHHHhcC---CCcCHHHHHHHHHHHHhc
Q 047932 226 FSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEE---ASRLLDLMIQIG---VHPNTFVYNTLMDGFCLT 299 (598)
Q Consensus 226 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---a~~~~~~~~~~~---~~~~~~~~~~ll~~~~~~ 299 (598)
+.-.|++++|+..|.+-++.. +.+...++.+..++.......+ .-.++..+.... .......|..++..+-+.
T Consensus 80 ~~~lg~~~eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~ 158 (539)
T KOG0548|consen 80 LFGLGDYEEAILAYSEGLEKD-PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKN 158 (539)
T ss_pred HHhcccHHHHHHHHHHHhhcC-CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcC
Confidence 999999999999999988763 3345566666666511100000 000111110000 000011122222111100
Q ss_pred -------CCHHHHHHHHHHHHH--------CC-------CCC----------------------ChhhHHHHHHHHHhcC
Q 047932 300 -------GRVNHAKELFVSMES--------NG-------CMH----------------------DVVSYTTLINGYCKTK 335 (598)
Q Consensus 300 -------g~~~~a~~~~~~~~~--------~~-------~~~----------------------~~~~~~~l~~~~~~~~ 335 (598)
.+.+...+..-.+.. .+ ..| -......+.+...+..
T Consensus 159 p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk 238 (539)
T KOG0548|consen 159 PTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKK 238 (539)
T ss_pred cHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 001111111111000 00 000 0011233455555556
Q ss_pred CHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHH-------HHHHHHHHcCCHH
Q 047932 336 NVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFEVHQVEHALKLFDEMQHNDVAADTYIYN-------TFIDGLCKNGFVL 408 (598)
Q Consensus 336 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-------~l~~~~~~~g~~~ 408 (598)
+++.|++-+....... .+..-++....++...|.+..+...-....+.|-. ...-|+ .+..++.+.++++
T Consensus 239 ~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~ 315 (539)
T KOG0548|consen 239 DFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYE 315 (539)
T ss_pred hHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHH
Confidence 6666666666665543 23334444445556666655555555444443311 111111 2223444455666
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047932 409 EALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNV-VTYNIMIHGLCNDGQMDKAHDLFLDM 487 (598)
Q Consensus 409 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~ 487 (598)
.|+..|.+.+.....|+. ..+....+++....+...-. .|.. .-...-...+.+.|++..|++.|.++
T Consensus 316 ~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~--~pe~A~e~r~kGne~Fk~gdy~~Av~~YteA 384 (539)
T KOG0548|consen 316 GAIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAYI--NPEKAEEEREKGNEAFKKGDYPEAVKHYTEA 384 (539)
T ss_pred HHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhh--ChhHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 666666665433222211 11223344444444433322 2222 11222255677899999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCccccchhHHHHHHHhcccCCCCCChHHHHH----HHHHhCCCCCChhhHHHhhhcC
Q 047932 488 EAKGVEPDCVIFNTIMLGFIRNNETSKSSRGKLMSQMSSCWSMCFQPKTLICSI----SIMLQKDMSPGDTMFSTALLMD 563 (598)
Q Consensus 488 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~----~~~~~~~~~~a~~~~~~~l~~~ 563 (598)
+.+. |-|...|....-+|.+.|.+..|++ -.+..++. .|+...-+. .+....+++.|...|+.+++.|
T Consensus 385 Ikr~-P~Da~lYsNRAac~~kL~~~~~aL~--Da~~~ieL-----~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 385 IKRD-PEDARLYSNRAACYLKLGEYPEALK--DAKKCIEL-----DPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred HhcC-CchhHHHHHHHHHHHHHhhHHHHHH--HHHHHHhc-----CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9986 7788899999999999999999999 88888744 676655444 5566789999999999999999
Q ss_pred ccccchhhHh
Q 047932 564 PDCSCDLESL 573 (598)
Q Consensus 564 P~~~~~~~~l 573 (598)
|++..+.+.+
T Consensus 457 p~~~e~~~~~ 466 (539)
T KOG0548|consen 457 PSNAEAIDGY 466 (539)
T ss_pred chhHHHHHHH
Confidence 9999987776
No 78
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.29 E-value=2.1e-09 Score=89.91 Aligned_cols=194 Identities=15% Similarity=0.088 Sum_probs=125.4
Q ss_pred CcccccCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhccHHHHH
Q 047932 46 GQGDINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCRIMEAA 125 (598)
Q Consensus 46 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~a~ 125 (598)
+..+++.|++..|.+-++++++.+|. +..+|..++..|.+.|+.+.|.+-|+++++.. |
T Consensus 42 al~YL~~gd~~~A~~nlekAL~~DPs--~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~--p----------------- 100 (250)
T COG3063 42 ALGYLQQGDYAQAKKNLEKALEHDPS--YYLAHLVRAHYYQKLGENDLADESYRKALSLA--P----------------- 100 (250)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcc--cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC--C-----------------
Confidence 34456777777777777777777765 66777777777777777777777777776541 2
Q ss_pred HHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHH
Q 047932 126 ALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFL 205 (598)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 205 (598)
.+..+.|.....+|.+|++++|...|++.....- +..-..+|..+.-+..+.|+++.|...|+
T Consensus 101 ------------~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~-----Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~ 163 (250)
T COG3063 101 ------------NNGDVLNNYGAFLCAQGRPEEAMQQFERALADPA-----YGEPSDTLENLGLCALKAGQFDQAEEYLK 163 (250)
T ss_pred ------------CccchhhhhhHHHHhCCChHHHHHHHHHHHhCCC-----CCCcchhhhhhHHHHhhcCCchhHHHHHH
Confidence 2445667777777777777777777777665431 22234566666666677777777777777
Q ss_pred HHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 047932 206 QMKDENINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQ 279 (598)
Q Consensus 206 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 279 (598)
+..+.... ...+...+.....+.|++-.|...++.....+. ++....-..++.--..|+.+.+.++=..+..
T Consensus 164 raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 164 RALELDPQ-FPPALLELARLHYKAGDYAPARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHhCcC-CChHHHHHHHHHHhcccchHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 77665322 444555666666777777777777776666543 5666666666666666666666655555444
No 79
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=9.9e-08 Score=89.98 Aligned_cols=419 Identities=15% Similarity=0.113 Sum_probs=244.5
Q ss_pred CcccccCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhccHHHHH
Q 047932 46 GQGDINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCRIMEAA 125 (598)
Q Consensus 46 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~a~ 125 (598)
|+..+..|+++.|+..|-.++..+|. +...|..-..+|+..|++++|++=-.+.++. .|+
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~p~--nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~---------------- 68 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLSPT--NHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPD---------------- 68 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccCCC--ccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCc----------------
Confidence 44556899999999999999999886 8899999999999999999998877776654 232
Q ss_pred HHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHH---HH
Q 047932 126 ALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKA---ME 202 (598)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A---~~ 202 (598)
-...|.....++.-.|++++|+..|.+-++.. +.+...++.+..++.......+. -.
T Consensus 69 -------------w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d-------~~n~~L~~gl~~a~~~~~~~~~~~~~p~ 128 (539)
T KOG0548|consen 69 -------------WAKGYSRKGAALFGLGDYEEAILAYSEGLEKD-------PSNKQLKTGLAQAYLEDYAADQLFTKPY 128 (539)
T ss_pred -------------hhhHHHHhHHHHHhcccHHHHHHHHHHHhhcC-------CchHHHHHhHHHhhhHHHHhhhhccCcH
Confidence 12234444444444444444444444444433 23333344343333100000000 00
Q ss_pred HHHHHhhC---CCCCCHHHHHHHHHHH----------HhcCCHHHHHHHHHHH-----HHCC-------CCC--------
Q 047932 203 LFLQMKDE---NINPNVVTYNSLIHCF----------SHADDWNEAKRLFIKM-----MDQG-------VHP-------- 249 (598)
Q Consensus 203 ~~~~~~~~---~~~~~~~~~~~l~~~~----------~~~~~~~~a~~~~~~~-----~~~~-------~~~-------- 249 (598)
++..+... ........|..++..+ .....+..+...+... ...+ ..|
T Consensus 129 ~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 208 (539)
T KOG0548|consen 129 FHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGF 208 (539)
T ss_pred HHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCC
Confidence 00000000 0000011111111111 0000011111111000 0000 001
Q ss_pred --------------CHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047932 250 --------------NVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTLMDGFCLTGRVNHAKELFVSMESN 315 (598)
Q Consensus 250 --------------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 315 (598)
-..-...+.+...+..++..+++.+....... .+..-++....+|...|.+.++........+.
T Consensus 209 ~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~ 286 (539)
T KOG0548|consen 209 PIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEV 286 (539)
T ss_pred CccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHH
Confidence 01123456777778888888998888888764 46666677778888888888887777776665
Q ss_pred CCCCChhhHHH-------HHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC
Q 047932 316 GCMHDVVSYTT-------LINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFEVHQVEHALKLFDEMQHNDVA 388 (598)
Q Consensus 316 ~~~~~~~~~~~-------l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 388 (598)
|.. ....|+. +..+|.+.++++.++..|.+.......|+. ..+....+++........-.+..
T Consensus 287 gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~~pe 356 (539)
T KOG0548|consen 287 GRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAYINPE 356 (539)
T ss_pred hHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhhChh
Confidence 421 2222322 344666778888899888887665333332 22334455555555444332211
Q ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-HHHHHHH
Q 047932 389 ADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPN-VVTYNIM 467 (598)
Q Consensus 389 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l 467 (598)
. ..-...-...+.+.|++..|+..|.++++.. +-|...|....-+|.+.|.+..|+.-.+...+. .|+ ...|..=
T Consensus 357 ~-A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--~p~~~kgy~RK 432 (539)
T KOG0548|consen 357 K-AEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIEL--DPNFIKAYLRK 432 (539)
T ss_pred H-HHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CchHHHHHHHH
Confidence 1 2222233667889999999999999999886 568899999999999999999999998888885 444 4556666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhcCCccccchhHHHHHH
Q 047932 468 IHGLCNDGQMDKAHDLFLDMEAKGVEPDCVIF-NTIMLGFIRNNETSKSSRGKLMSQM 524 (598)
Q Consensus 468 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~ 524 (598)
+.++....+|+.|.+.|.+.++.+ |+..-+ ..+.++.........-.+ +.+..
T Consensus 433 g~al~~mk~ydkAleay~eale~d--p~~~e~~~~~~rc~~a~~~~~~~ee--~~~r~ 486 (539)
T KOG0548|consen 433 GAALRAMKEYDKALEAYQEALELD--PSNAEAIDGYRRCVEAQRGDETPEE--TKRRA 486 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC--chhHHHHHHHHHHHHHhhcCCCHHH--HHHhh
Confidence 667777889999999999999865 554444 444444443222333344 45543
No 80
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.26 E-value=4.9e-09 Score=101.98 Aligned_cols=244 Identities=18% Similarity=0.177 Sum_probs=113.2
Q ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHhc-----C-CCcCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C--C
Q 047932 252 VTFSVIVDELCKNGKMEEASRLLDLMIQI-----G-VHPNTF-VYNTLMDGFCLTGRVNHAKELFVSMESN-----G--C 317 (598)
Q Consensus 252 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~-~~~~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~--~ 317 (598)
.+...+...|...|+++.|..+++..++. | ..|... ..+.+...|...+++++|..+|+++... | .
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 35555677777777777777777766553 1 011222 2223445556666666666666655432 1 1
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHccC-----CC-CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcC
Q 047932 318 MHDVVSYTTLINGYCKTKNVEEALNLYRKMLPK-----GI-RPTV-VTYSTLFLGLFEVHQVEHALKLFDEMQHNDVAAD 390 (598)
Q Consensus 318 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~-~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 390 (598)
+.-..+++.|...|.+.|++++|...+++..+- +. .|.. ..++.++..+...+++++|..+++...+.
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i----- 354 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKI----- 354 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH-----
Confidence 112334445555566666666555555544321 00 0111 12233333444444555544444433221
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CC--CC-CHHH
Q 047932 391 TYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRV----GL--LP-NVVT 463 (598)
Q Consensus 391 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~--~p-~~~~ 463 (598)
+..........-..+++.|...|...|++++|.+++++++.. +. .+ ....
T Consensus 355 -----------------------~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~ 411 (508)
T KOG1840|consen 355 -----------------------YLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKP 411 (508)
T ss_pred -----------------------HHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHH
Confidence 000000000011234555555555666666665555555431 01 11 1334
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH----CCC-CC-CHHHHHHHHHHHHhcCCccccchhHHHHHHH
Q 047932 464 YNIMIHGLCNDGQMDKAHDLFLDMEA----KGV-EP-DCVIFNTIMLGFIRNNETSKSSRGKLMSQMS 525 (598)
Q Consensus 464 ~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~-~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 525 (598)
++.+...|.+.+++.+|.++|.+... .|. .| ...+|..|...|.+.|++++|.+ +.+.+.
T Consensus 412 l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~--~~~~~~ 477 (508)
T KOG1840|consen 412 LNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEE--LEEKVL 477 (508)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHH--HHHHHH
Confidence 55555555555555555555554321 110 11 22455556666666666666666 555554
No 81
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.26 E-value=4.7e-09 Score=102.07 Aligned_cols=237 Identities=18% Similarity=0.136 Sum_probs=140.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC-CCCHh-hHHHHHHHHHhCCCHHHHHHHHHHHHhc-----C--
Q 047932 216 VVTYNSLIHCFSHADDWNEAKRLFIKMMDQ-----GV-HPNVV-TFSVIVDELCKNGKMEEASRLLDLMIQI-----G-- 281 (598)
Q Consensus 216 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~-- 281 (598)
..+...+...|...|+++.|+.+++..++. |. .|... ..+.+...|...+++++|..+|++++.. |
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 345666788888888888888888877654 11 23333 3344677888889999988888888764 2
Q ss_pred CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC-CCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHccC---C
Q 047932 282 VHPNTFVYNTLMDGFCLTGRVNHAKELFVSMESN-----GC-MHD-VVSYTTLINGYCKTKNVEEALNLYRKMLPK---G 351 (598)
Q Consensus 282 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~~-~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~ 351 (598)
.+.-..+++.|..+|.+.|++++|...++...+. +. .+. ...++.+...++..+++++|..+++...+. -
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 1112346777778888999988888877765432 11 112 223556677788889999998888865432 0
Q ss_pred CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC-------CCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh-
Q 047932 352 IRP----TVVTYSTLFLGLFEVHQVEHALKLFDEMQHND-------VAADTYIYNTFIDGLCKNGFVLEALELFCAIGN- 419 (598)
Q Consensus 352 ~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~- 419 (598)
+.+ -..+++.+...|...|++++|.++++.++... ..-....++.+...|.+.+.+.+|..+|.+...
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 111 13456666666777777777777766654320 111133445555555555555555555554321
Q ss_pred ---C--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 047932 420 ---S--KYELDIISYSCLIDGLCKIGKLETAWELFQSL 452 (598)
Q Consensus 420 ---~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 452 (598)
. +.+-...+|..|+..|...|+++.|+++.+..
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~ 476 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKV 476 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 1 11112334555555555555555555555444
No 82
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.25 E-value=9.8e-09 Score=86.01 Aligned_cols=199 Identities=14% Similarity=0.004 Sum_probs=133.2
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHH
Q 047932 142 TYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTYNS 221 (598)
Q Consensus 142 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 221 (598)
+..-|.-.|...|++..|..-+++.++.+ |.+..+|..+...|-+.|..+.|.+.|+...+.... +..+.|.
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-------Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNN 108 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-------PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNN 108 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhh
Confidence 34556667777777777777777777765 455667777777777777777777777777765333 5667777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcC
Q 047932 222 LIHCFSHADDWNEAKRLFIKMMDQGVHP-NVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTLMDGFCLTG 300 (598)
Q Consensus 222 l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 300 (598)
....+|..|.+++|...|++......-+ -..+|..+.-+..+.|+++.|..+|++.++.... ...+...+.....+.|
T Consensus 109 YG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~ 187 (250)
T COG3063 109 YGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAG 187 (250)
T ss_pred hhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcc
Confidence 7777777777777777777776642222 2346666777777777777777777777766422 3445566666677777
Q ss_pred CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccC
Q 047932 301 RVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPK 350 (598)
Q Consensus 301 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 350 (598)
++-.|...++.....+. ++..+.-..|+.-...|+.+.+.+.=..+...
T Consensus 188 ~y~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 188 DYAPARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred cchHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 77777777777666553 56666666666666667666666555555443
No 83
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.25 E-value=1.2e-08 Score=95.28 Aligned_cols=223 Identities=14% Similarity=0.013 Sum_probs=149.0
Q ss_pred cccCCChHHHHHHHHHHHHcCCCC--CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhccHHHHHH
Q 047932 49 DINLITPNEALCIFDYMLRMHPSP--PPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCRIMEAAA 126 (598)
Q Consensus 49 ~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~a~~ 126 (598)
+...+..+.++..+.+++...+.. ..+..|..++..+...|++++|+..|+++++. .|
T Consensus 36 ~~~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l--~P------------------ 95 (296)
T PRK11189 36 LQPTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALAL--RP------------------ 95 (296)
T ss_pred cCCchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--CC------------------
Confidence 345567788888888888644421 23566888888888899999998888888764 22
Q ss_pred HHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHH
Q 047932 127 LFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQ 206 (598)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 206 (598)
.+...|+.+...+...|++++|...|++..+.+ +.+..+|..+...+...|++++|.+.|+.
T Consensus 96 -----------~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-------P~~~~a~~~lg~~l~~~g~~~eA~~~~~~ 157 (296)
T PRK11189 96 -----------DMADAYNYLGIYLTQAGNFDAAYEAFDSVLELD-------PTYNYAYLNRGIALYYGGRYELAQDDLLA 157 (296)
T ss_pred -----------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 356788888889999999999999999988865 44577888888888889999999999988
Q ss_pred HhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhc---CC-
Q 047932 207 MKDENINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQI---GV- 282 (598)
Q Consensus 207 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~- 282 (598)
..... |+..........+...++.++|...|.+..... .++...+ .......|+...+ +.+..+.+. ..
T Consensus 158 al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~-~~~~~~~---~~~~~~lg~~~~~-~~~~~~~~~~~~~~~ 230 (296)
T PRK11189 158 FYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEKL-DKEQWGW---NIVEFYLGKISEE-TLMERLKAGATDNTE 230 (296)
T ss_pred HHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC-CccccHH---HHHHHHccCCCHH-HHHHHHHhcCCCcHH
Confidence 88753 332222222233445678888988887655432 2232221 2223345555443 244444321 10
Q ss_pred --CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 047932 283 --HPNTFVYNTLMDGFCLTGRVNHAKELFVSMESNG 316 (598)
Q Consensus 283 --~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 316 (598)
+.....|..+...+...|++++|...|++..+.+
T Consensus 231 l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 231 LAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 1123467777777777788888888887777664
No 84
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.24 E-value=2e-08 Score=100.97 Aligned_cols=501 Identities=13% Similarity=0.039 Sum_probs=281.8
Q ss_pred CcccccCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH-HhHHHHHhc-----
Q 047932 46 GQGDINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDL-YTHSILINC----- 119 (598)
Q Consensus 46 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~ll~~----- 119 (598)
|..+....|...|.+.|+.+-+.++. +..++......|++..+++.|..+.-...+. .|-. ..++-.-.+
T Consensus 499 G~iYrd~~Dm~RA~kCf~KAFeLDat--daeaaaa~adtyae~~~we~a~~I~l~~~qk--a~a~~~k~nW~~rG~yyLe 574 (1238)
T KOG1127|consen 499 GQIYRDSDDMKRAKKCFDKAFELDAT--DAEAAAASADTYAEESTWEEAFEICLRAAQK--APAFACKENWVQRGPYYLE 574 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCch--hhhhHHHHHHHhhccccHHHHHHHHHHHhhh--chHHHHHhhhhhccccccC
Confidence 44444455677888889888888776 8888888889999888988888874333221 1111 111111122
Q ss_pred --cHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCH
Q 047932 120 --RIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFV 197 (598)
Q Consensus 120 --~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 197 (598)
+...|+..|+...+.++ .|...|..++.+|.+.|++..|.++|.++.... |.+...-.-.....+..|.+
T Consensus 575 a~n~h~aV~~fQsALR~dP-kD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr-------P~s~y~~fk~A~~ecd~GkY 646 (1238)
T KOG1127|consen 575 AHNLHGAVCEFQSALRTDP-KDYNLWLGLGEAYPESGRYSHALKVFTKASLLR-------PLSKYGRFKEAVMECDNGKY 646 (1238)
T ss_pred ccchhhHHHHHHHHhcCCc-hhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC-------cHhHHHHHHHHHHHHHhhhH
Confidence 77788888888887653 378889999999999999999999999887754 22333333344556778999
Q ss_pred HHHHHHHHHHhhC------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH-------HHHCCCCCCHhhHHHHHHHHH--
Q 047932 198 DKAMELFLQMKDE------NINPNVVTYNSLIHCFSHADDWNEAKRLFIK-------MMDQGVHPNVVTFSVIVDELC-- 262 (598)
Q Consensus 198 ~~A~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-------~~~~~~~~~~~~~~~l~~~~~-- 262 (598)
.+|+..+...... +..--..++..+...+...|-..++.+.+++ .+......+...|..+..+|.
T Consensus 647 keald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f 726 (1238)
T KOG1127|consen 647 KEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIF 726 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHH
Confidence 9999888877542 1111222333333333333333333333333 332221222222322222211
Q ss_pred -hCC--CHH-HHHHHH-HHHHhcCC--------------------CcCHHHHHHHHHHHHh----cC----CHHHHHHHH
Q 047932 263 -KNG--KME-EASRLL-DLMIQIGV--------------------HPNTFVYNTLMDGFCL----TG----RVNHAKELF 309 (598)
Q Consensus 263 -~~g--~~~-~a~~~~-~~~~~~~~--------------------~~~~~~~~~ll~~~~~----~g----~~~~a~~~~ 309 (598)
... -+. ....++ .+....+. ..+...|..++..|.+ .| +...|...+
T Consensus 727 ~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~ 806 (1238)
T KOG1127|consen 727 SQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCC 806 (1238)
T ss_pred HHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHH
Confidence 110 000 000011 11111111 1123334444433332 22 223566666
Q ss_pred HHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCc
Q 047932 310 VSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFEVHQVEHALKLFDEMQHNDVAA 389 (598)
Q Consensus 310 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 389 (598)
....+.. ..+..+|+.|.-. ...|++.-|...|-+-..... ....+|..+...+....+++.|...|....... |.
T Consensus 807 KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep-~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLd-P~ 882 (1238)
T KOG1127|consen 807 KKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEP-TCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLD-PL 882 (1238)
T ss_pred HHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhccc-cchhheeccceeEEecccHHHhhHHHHhhhhcC-ch
Confidence 6665542 3366667776655 555677777766666555433 256777777778888889999999998888764 44
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHH--Hh--hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---------CC
Q 047932 390 DTYIYNTFIDGLCKNGFVLEALELFCA--IG--NSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSR---------VG 456 (598)
Q Consensus 390 ~~~~~~~l~~~~~~~g~~~~A~~~~~~--~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------~~ 456 (598)
+...|..........|+.-++..+|.. .. ..|--++..-|.+........|+.++-+...+.+.. .+
T Consensus 883 nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~ 962 (1238)
T KOG1127|consen 883 NLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLG 962 (1238)
T ss_pred hhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhc
Confidence 555665555555677888888877765 22 223334444444444445556665555444443322 12
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHH----HHHHHHHhcCCccccchhHHHHHHHhcccCC
Q 047932 457 LLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEAK-GVEPDCVIFN----TIMLGFIRNNETSKSSRGKLMSQMSSCWSMC 531 (598)
Q Consensus 457 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~----~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 531 (598)
.+.....|...+...-+.+.+..|.+...++... ..+-+...|+ ...+.++..|.++.|.. -+..... .
T Consensus 963 ~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~--a~~~~~~----e 1036 (1238)
T KOG1127|consen 963 HPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKK--ASWKEWM----E 1036 (1238)
T ss_pred CcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhh--hhcccch----h
Confidence 3334566666666666777777777766665421 0122333333 34455667777776655 3322211 1
Q ss_pred CCCChHHHHHHHHHhCCCCCChhhHHHhhhcCccccc
Q 047932 532 FQPKTLICSISIMLQKDMSPGDTMFSTALLMDPDCSC 568 (598)
Q Consensus 532 ~~p~~~~~~~~~~~~~~~~~a~~~~~~~l~~~P~~~~ 568 (598)
...|..-........++++++...|++++.+.-++++
T Consensus 1037 vdEdi~gt~l~lFfkndf~~sl~~fe~aLsis~se~d 1073 (1238)
T KOG1127|consen 1037 VDEDIRGTDLTLFFKNDFFSSLEFFEQALSISNSESD 1073 (1238)
T ss_pred HHHHHhhhhHHHHHHhHHHHHHHHHHHHhhhcccccc
Confidence 1112222222335578888899999999988887777
No 85
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.22 E-value=2.7e-08 Score=92.93 Aligned_cols=217 Identities=13% Similarity=0.022 Sum_probs=142.2
Q ss_pred cHHHHHHHHHHHHHcC---CCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCC
Q 047932 120 RIMEAAALFTKLRVFG---CEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGF 196 (598)
Q Consensus 120 ~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 196 (598)
..+.++.-+.+++... .......|..+...|.+.|+.++|...|++..+.+ +.+...|+.+...+...|+
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-------P~~~~a~~~lg~~~~~~g~ 113 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-------PDMADAYNYLGIYLTQAGN 113 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-------CCCHHHHHHHHHHHHHCCC
Confidence 3455555555555421 11124567788888889999999999999988876 5668889999999999999
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHH
Q 047932 197 VDKAMELFLQMKDENINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDL 276 (598)
Q Consensus 197 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 276 (598)
+++|.+.|+...+.... +..+|..+..++...|++++|.+.|+...+.. |+..........+...++.++|...+..
T Consensus 114 ~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~ 190 (296)
T PRK11189 114 FDAAYEAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQ 190 (296)
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 99999999998875332 56678888888888999999999999888753 3332222222234456788888888876
Q ss_pred HHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CC---CCChhhHHHHHHHHHhcCCHHHHHHHHHHHccC
Q 047932 277 MIQIGVHPNTFVYNTLMDGFCLTGRVNHAKELFVSMESN---GC---MHDVVSYTTLINGYCKTKNVEEALNLYRKMLPK 350 (598)
Q Consensus 277 ~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 350 (598)
..... .++... .. ......|+...+ +.+..+.+. .. +.....|..+...+.+.|++++|+..|++....
T Consensus 191 ~~~~~-~~~~~~-~~--~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~ 265 (296)
T PRK11189 191 RYEKL-DKEQWG-WN--IVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALAN 265 (296)
T ss_pred HHhhC-CccccH-HH--HHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 55432 222221 12 223335555443 244443321 00 113346777777777888888888888877765
Q ss_pred C
Q 047932 351 G 351 (598)
Q Consensus 351 ~ 351 (598)
+
T Consensus 266 ~ 266 (296)
T PRK11189 266 N 266 (296)
T ss_pred C
Confidence 4
No 86
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.21 E-value=5e-07 Score=80.29 Aligned_cols=303 Identities=11% Similarity=0.063 Sum_probs=172.2
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHH
Q 047932 139 DVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVT 218 (598)
Q Consensus 139 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 218 (598)
++.-..-+...+...|++..|+..|...+..+ +.+-.++..-...|...|+..-|+.=+..+++. +||-..
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~d-------p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ 107 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGD-------PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMA 107 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC-------chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHH
Confidence 34445556777777788888888888777654 333444555556777777777777777777763 555432
Q ss_pred H-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--hh------------HHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Q 047932 219 Y-NSLIHCFSHADDWNEAKRLFIKMMDQGVHPNV--VT------------FSVIVDELCKNGKMEEASRLLDLMIQIGVH 283 (598)
Q Consensus 219 ~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~------------~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 283 (598)
- ..-...+.+.|.+++|..=|+.+++.....+. .. ....+..+...|+...++..+..+++.. +
T Consensus 108 ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~ 186 (504)
T KOG0624|consen 108 ARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-P 186 (504)
T ss_pred HHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-c
Confidence 2 22344567778888888888777765321110 01 1123344555667777777777776653 3
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHHH----H
Q 047932 284 PNTFVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVT----Y 359 (598)
Q Consensus 284 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~----~ 359 (598)
-|...+..-..+|...|++..|+.-++...+.. ..+...+--+...+...|+.+.++...++..+. .||... |
T Consensus 187 Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~Y 263 (504)
T KOG0624|consen 187 WDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFY 263 (504)
T ss_pred chhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHH
Confidence 366666666677777777777766666655442 224444555556666677777777777666654 233321 1
Q ss_pred HHH---------HHHHHhcCCHHHHHHHHHHHhhCCCCcCHH---HHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHH
Q 047932 360 STL---------FLGLFEVHQVEHALKLFDEMQHNDVAADTY---IYNTFIDGLCKNGFVLEALELFCAIGNSKYELDII 427 (598)
Q Consensus 360 ~~l---------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 427 (598)
..+ +......+++.+++.-.+...+........ .+..+-.++...|++.+|++...++++.. +.|+.
T Consensus 264 KklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d-~~dv~ 342 (504)
T KOG0624|consen 264 KKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDID-PDDVQ 342 (504)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcC-chHHH
Confidence 111 111223455555555555555543221111 22233344455566666666666666542 22356
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 047932 428 SYSCLIDGLCKIGKLETAWELFQSLSRV 455 (598)
Q Consensus 428 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 455 (598)
++..-..+|.....++.|+.-|+...+.
T Consensus 343 ~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 343 VLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 6666666666666666666666666653
No 87
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.20 E-value=4.5e-07 Score=91.61 Aligned_cols=84 Identities=18% Similarity=0.232 Sum_probs=65.1
Q ss_pred CCcccccCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHH---HHHhc--
Q 047932 45 SGQGDINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS---ILINC-- 119 (598)
Q Consensus 45 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~---~ll~~-- 119 (598)
.|-.++..++..+|...|+.+++.+|. +...|..++.+|.+.|.+..|.+.|.++... .|+..... ..+.+
T Consensus 568 rG~yyLea~n~h~aV~~fQsALR~dPk--D~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~s~y~~fk~A~~ecd~ 643 (1238)
T KOG1127|consen 568 RGPYYLEAHNLHGAVCEFQSALRTDPK--DYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPLSKYGRFKEAVMECDN 643 (1238)
T ss_pred ccccccCccchhhHHHHHHHHhcCCch--hHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcHhHHHHHHHHHHHHHh
Confidence 344567899999999999999999987 9999999999999999999999999998865 45433221 22222
Q ss_pred -cHHHHHHHHHHHH
Q 047932 120 -RIMEAAALFTKLR 132 (598)
Q Consensus 120 -~~~~a~~~~~~~~ 132 (598)
.+.+|+..+..+.
T Consensus 644 GkYkeald~l~~ii 657 (1238)
T KOG1127|consen 644 GKYKEALDALGLII 657 (1238)
T ss_pred hhHHHHHHHHHHHH
Confidence 6666766666554
No 88
>PF13041 PPR_2: PPR repeat family
Probab=99.18 E-value=7.8e-11 Score=76.44 Aligned_cols=49 Identities=49% Similarity=0.864 Sum_probs=33.4
Q ss_pred CCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 047932 179 PDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTYNSLIHCFS 227 (598)
Q Consensus 179 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 227 (598)
||..+|+++|.+|++.|++++|.++|++|.+.|++||..||+.++++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 5666666666666666666666666666666666666666666666665
No 89
>PF13041 PPR_2: PPR repeat family
Probab=99.15 E-value=1.5e-10 Score=75.14 Aligned_cols=49 Identities=39% Similarity=0.877 Sum_probs=30.6
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 047932 459 PNVVTYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFI 507 (598)
Q Consensus 459 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 507 (598)
||..+||.++.+|++.|++++|.++|++|.+.|++||..||+.++.+|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4556666666666666666666666666666666666666666666554
No 90
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.14 E-value=9.9e-08 Score=82.92 Aligned_cols=183 Identities=14% Similarity=0.161 Sum_probs=130.8
Q ss_pred cccCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHh-----c-cHH
Q 047932 49 DINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILIN-----C-RIM 122 (598)
Q Consensus 49 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~-----~-~~~ 122 (598)
+++..++.+|++++..-.+..|. +......+...|....++..|.++|+++-.. .|....|...-. + .+.
T Consensus 20 lI~d~ry~DaI~~l~s~~Er~p~--~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~A~i~A 95 (459)
T KOG4340|consen 20 LIRDARYADAIQLLGSELERSPR--SRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYKACIYA 95 (459)
T ss_pred HHHHhhHHHHHHHHHHHHhcCcc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHhcccH
Confidence 34667789999999988888775 7788889999999999999999999999865 566555543322 2 777
Q ss_pred HHHHHHHHHHHcCCCCCHh--hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHH
Q 047932 123 EAAALFTKLRVFGCEPDVF--TYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKA 200 (598)
Q Consensus 123 ~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 200 (598)
+|+++...|... +... +...-..+....+++..+..+.++....+ +..+.+.......+.|+++.|
T Consensus 96 DALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---------~Ad~~in~gCllykegqyEaA 163 (459)
T KOG4340|consen 96 DALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---------EADGQINLGCLLYKEGQYEAA 163 (459)
T ss_pred HHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---------ccchhccchheeeccccHHHH
Confidence 888887777532 2221 11122233446788888888888776433 355556666677789999999
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 047932 201 MELFLQMKDENINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVH 248 (598)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 248 (598)
.+-|+...+-+--.....|+ +.-+..+.++++.|++...+++++|++
T Consensus 164 vqkFqaAlqvsGyqpllAYn-iALaHy~~~qyasALk~iSEIieRG~r 210 (459)
T KOG4340|consen 164 VQKFQAALQVSGYQPLLAYN-LALAHYSSRQYASALKHISEIIERGIR 210 (459)
T ss_pred HHHHHHHHhhcCCCchhHHH-HHHHHHhhhhHHHHHHHHHHHHHhhhh
Confidence 99999888763333455666 444566788999999999999888764
No 91
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.13 E-value=1.4e-07 Score=83.60 Aligned_cols=197 Identities=9% Similarity=-0.001 Sum_probs=96.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcCHHHH-HHHHHHH
Q 047932 218 TYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVY-NTLMDGF 296 (598)
Q Consensus 218 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~ll~~~ 296 (598)
-..-+...+...|++..|+..|....+.+ +.+..++..-...|...|+...|+.-+...++. +||-..- ..-...+
T Consensus 40 khlElGk~lla~~Q~sDALt~yHaAve~d-p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vl 116 (504)
T KOG0624|consen 40 KHLELGKELLARGQLSDALTHYHAAVEGD-PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVL 116 (504)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHcCC-chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhh
Confidence 33345555666666777777766666541 112223333445666667766666666666653 4443221 1222445
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCh--hh------------HHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHH
Q 047932 297 CLTGRVNHAKELFVSMESNGCMHDV--VS------------YTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTL 362 (598)
Q Consensus 297 ~~~g~~~~a~~~~~~~~~~~~~~~~--~~------------~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 362 (598)
.+.|+++.|..-|+.++........ .. ....+..+...|+...|+.....+++.. +-|...+..-
T Consensus 117 lK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~R 195 (504)
T KOG0624|consen 117 LKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQAR 195 (504)
T ss_pred hhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHH
Confidence 6667777777777766665311100 00 1112222334455555555555555432 1244444444
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 047932 363 FLGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGN 419 (598)
Q Consensus 363 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 419 (598)
..+|...|++..|+.-++.+.+.. ..++..+..+-..+...|+.+.++...++-++
T Consensus 196 akc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK 251 (504)
T KOG0624|consen 196 AKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLK 251 (504)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc
Confidence 455555555555555444444432 22333444444444555555555555555444
No 92
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.12 E-value=8.8e-07 Score=86.24 Aligned_cols=306 Identities=12% Similarity=-0.000 Sum_probs=174.3
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC-CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHH
Q 047932 180 DTVTYNTIIDGVCKEGFVDKAMELFLQMKDENI-NPNV-VTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVI 257 (598)
Q Consensus 180 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 257 (598)
....|..+...+...|+.+.+.+.+........ ..+. .........+...|++++|.+.+++..+.. +.+...+..
T Consensus 5 ~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~- 82 (355)
T cd05804 5 FALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL- 82 (355)
T ss_pred cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-
Confidence 456677777777778888887777766654321 1122 222233445677899999999999888762 334434432
Q ss_pred HHHHHh----CCCHHHHHHHHHHHHhcCCCcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 047932 258 VDELCK----NGKMEEASRLLDLMIQIGVHPN-TFVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYC 332 (598)
Q Consensus 258 ~~~~~~----~g~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 332 (598)
...+.. .+....+.+.+... ....|+ ......+...+...|++++|...+++..+.. +.+...+..+..++.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~ 159 (355)
T cd05804 83 HLGAFGLGDFSGMRDHVARVLPLW--APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLE 159 (355)
T ss_pred hHHHHHhcccccCchhHHHHHhcc--CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHH
Confidence 222222 34455555555441 112233 3344456677888899999999999988875 445667778888888
Q ss_pred hcCCHHHHHHHHHHHccCCCC-CCH--HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC-CcCHHHH-H--HHHHHHHHcC
Q 047932 333 KTKNVEEALNLYRKMLPKGIR-PTV--VTYSTLFLGLFEVHQVEHALKLFDEMQHNDV-AADTYIY-N--TFIDGLCKNG 405 (598)
Q Consensus 333 ~~~~~~~A~~~~~~~~~~~~~-~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~-~--~l~~~~~~~g 405 (598)
..|++++|...+.+....... ++. ..|..+...+...|++++|..+++++..... .+..... + .++.-+...|
T Consensus 160 ~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g 239 (355)
T cd05804 160 MQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAG 239 (355)
T ss_pred HcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcC
Confidence 899999999998887765321 222 3455677778888999999999888764322 1112111 1 2222233334
Q ss_pred CHHHHHHH---HHHHhhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC--C------HHHHHHHHHHHHh
Q 047932 406 FVLEALEL---FCAIGNS-KYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLP--N------VVTYNIMIHGLCN 473 (598)
Q Consensus 406 ~~~~A~~~---~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~------~~~~~~l~~~~~~ 473 (598)
....+..+ ....... ............+.++...|+.+.|..+++.+....... . .........++..
T Consensus 240 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~ 319 (355)
T cd05804 240 HVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFA 319 (355)
T ss_pred CCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHH
Confidence 32222222 1111111 001112222345666677778888888887765521110 0 1111122233457
Q ss_pred cCCHHHHHHHHHHHHHC
Q 047932 474 DGQMDKAHDLFLDMEAK 490 (598)
Q Consensus 474 ~g~~~~A~~~~~~~~~~ 490 (598)
.|++++|.+.+...+..
T Consensus 320 ~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 320 EGNYATALELLGPVRDD 336 (355)
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 77888888777777643
No 93
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.12 E-value=9.5e-07 Score=86.28 Aligned_cols=165 Identities=17% Similarity=0.143 Sum_probs=85.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCH
Q 047932 328 INGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFV 407 (598)
Q Consensus 328 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 407 (598)
+.+......|.+|+.+++.+..... ...-|..+...|+..|+++.|.++|.+.- .++-.|.+|.+.|++
T Consensus 739 ieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccH
Confidence 3344455566666666666655422 23335556666666666666666665432 233445566666666
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047932 408 LEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDM 487 (598)
Q Consensus 408 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 487 (598)
+.|.++-.+.. +.......|..-..-+-.+|++.+|.++|-.+. .|+. -|..|-+.|..+..+++.++-
T Consensus 808 ~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~k~ 876 (1636)
T KOG3616|consen 808 EDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVEKH 876 (1636)
T ss_pred HHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHHHh
Confidence 66666655443 223334445555555556666666666554332 1331 244455556555555555433
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCccccch
Q 047932 488 EAKGVEPDCVIFNTIMLGFIRNNETSKSSR 517 (598)
Q Consensus 488 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 517 (598)
.-. .-..|-..+..-|...|+...|..
T Consensus 877 h~d---~l~dt~~~f~~e~e~~g~lkaae~ 903 (1636)
T KOG3616|consen 877 HGD---HLHDTHKHFAKELEAEGDLKAAEE 903 (1636)
T ss_pred Chh---hhhHHHHHHHHHHHhccChhHHHH
Confidence 211 112344444455555555555555
No 94
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.11 E-value=7.2e-07 Score=86.86 Aligned_cols=305 Identities=12% Similarity=0.052 Sum_probs=189.6
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHH
Q 047932 140 VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPD-TVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVT 218 (598)
Q Consensus 140 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 218 (598)
...|..+...+...|+.+.+...+....+... ...+ ..........+...|++++|.+.+++..+.. +.+...
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a 79 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALA-----ARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLA 79 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhc-----cCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHH
Confidence 34566777777788888888877777766541 1112 1223333456678899999999999988763 234444
Q ss_pred HHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCC-HhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcCHHHHHHHH
Q 047932 219 YNSLIHCFSH----ADDWNEAKRLFIKMMDQGVHPN-VVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTLM 293 (598)
Q Consensus 219 ~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll 293 (598)
+.. ...+.. .+..+.+.+.+... ....|+ ......+...+...|++++|...+++..+.. +.+...+..+.
T Consensus 80 ~~~-~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la 155 (355)
T cd05804 80 LKL-HLGAFGLGDFSGMRDHVARVLPLW--APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVA 155 (355)
T ss_pred HHH-hHHHHHhcccccCchhHHHHHhcc--CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHH
Confidence 442 222322 34555555555441 112233 3344556678889999999999999999875 33567788888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCC-CCh--hhHHHHHHHHHhcCCHHHHHHHHHHHccCCC-CCCHHHH-H--HHHHHH
Q 047932 294 DGFCLTGRVNHAKELFVSMESNGCM-HDV--VSYTTLINGYCKTKNVEEALNLYRKMLPKGI-RPTVVTY-S--TLFLGL 366 (598)
Q Consensus 294 ~~~~~~g~~~~a~~~~~~~~~~~~~-~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~-~--~l~~~~ 366 (598)
..+...|++++|...+++....... ++. ..|..+...+...|++++|..++++...... .+..... . .++..+
T Consensus 156 ~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 235 (355)
T cd05804 156 HVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRL 235 (355)
T ss_pred HHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHH
Confidence 9999999999999999998875321 222 3455788889999999999999999864432 1122111 1 223333
Q ss_pred HhcCCHHHHHHH--H-HHHhhCC-CCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCC--------CCHHHHHHHHH
Q 047932 367 FEVHQVEHALKL--F-DEMQHND-VAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYE--------LDIISYSCLID 434 (598)
Q Consensus 367 ~~~~~~~~a~~~--~-~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--------~~~~~~~~l~~ 434 (598)
...|....+..+ + ....... .............++...|+.+.|...++.+...... ...........
T Consensus 236 ~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~ 315 (355)
T cd05804 236 ELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEAL 315 (355)
T ss_pred HhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHH
Confidence 334433333322 1 2111110 0111222235666778899999999999887643211 01222333444
Q ss_pred HHHHcCCHHHHHHHHHHHHh
Q 047932 435 GLCKIGKLETAWELFQSLSR 454 (598)
Q Consensus 435 ~~~~~g~~~~A~~~~~~~~~ 454 (598)
++...|+.++|.+.+.....
T Consensus 316 ~~~~~g~~~~A~~~L~~al~ 335 (355)
T cd05804 316 YAFAEGNYATALELLGPVRD 335 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 56689999999999988765
No 95
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.09 E-value=8.5e-06 Score=80.91 Aligned_cols=221 Identities=14% Similarity=0.179 Sum_probs=136.3
Q ss_pred cccCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH------------HhCCCCCCHHhHHHH
Q 047932 49 DINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRL------------NSTGLFPDLYTHSIL 116 (598)
Q Consensus 49 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~------------~~~~~~p~~~~~~~l 116 (598)
+.-.|+.|.|.+..+.+ .+-..|..|+..+.+.++++-|.-++-.| .+.+- +...--.+
T Consensus 738 yvtiG~MD~AfksI~~I-------kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~--e~eakvAv 808 (1416)
T KOG3617|consen 738 YVTIGSMDAAFKSIQFI-------KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE--EDEAKVAV 808 (1416)
T ss_pred EEEeccHHHHHHHHHHH-------hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc--chhhHHHH
Confidence 46789999999988877 26678999999999888877666555433 33221 11111222
Q ss_pred Hhc---cHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHh
Q 047932 117 INC---RIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCK 193 (598)
Q Consensus 117 l~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 193 (598)
+.. .+++|..+|++-.+. ..|-..|-..|.+++|.++-+.=.+.. -..||......+-.
T Consensus 809 LAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiH---------Lr~Tyy~yA~~Lea 870 (1416)
T KOG3617|consen 809 LAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIH---------LRNTYYNYAKYLEA 870 (1416)
T ss_pred HHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhcccee---------hhhhHHHHHHHHHh
Confidence 222 889999999887753 345566778899999998876543322 14566667777777
Q ss_pred cCCHHHHHHHHHHHh----------hCCC---------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhH
Q 047932 194 EGFVDKAMELFLQMK----------DENI---------NPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTF 254 (598)
Q Consensus 194 ~g~~~~A~~~~~~~~----------~~~~---------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 254 (598)
.++.+.|++.|++.- ...+ ..|...|.......-..|+.+.|+.+|..... |
T Consensus 871 r~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~ 941 (1416)
T KOG3617|consen 871 RRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------Y 941 (1416)
T ss_pred hccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------h
Confidence 888888888876532 1110 11334444455555667888888888877654 3
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 047932 255 SVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTLMDGFCLTGRVNHAKELFVS 311 (598)
Q Consensus 255 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 311 (598)
-.+++..|-+|+.++|-++-++- | |......+.+.|-..|++.+|...|.+
T Consensus 942 fs~VrI~C~qGk~~kAa~iA~es---g---d~AAcYhlaR~YEn~g~v~~Av~FfTr 992 (1416)
T KOG3617|consen 942 FSMVRIKCIQGKTDKAARIAEES---G---DKAACYHLARMYENDGDVVKAVKFFTR 992 (1416)
T ss_pred hhheeeEeeccCchHHHHHHHhc---c---cHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 33445555555555555444331 1 444444455555555555555555443
No 96
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.08 E-value=1.3e-08 Score=96.50 Aligned_cols=228 Identities=15% Similarity=0.151 Sum_probs=165.9
Q ss_pred cccCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhccHHHHHHHH
Q 047932 49 DINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCRIMEAAALF 128 (598)
Q Consensus 49 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~a~~~~ 128 (598)
+++.|++.+|.-.|+.+...+|. ++.+|..|......+++-..|+..++++++. .|
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP~--haeAW~~LG~~qaENE~E~~ai~AL~rcl~L--dP-------------------- 350 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDPQ--HAEAWQKLGITQAENENEQNAISALRRCLEL--DP-------------------- 350 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhChH--HHHHHHHhhhHhhhccchHHHHHHHHHHHhc--CC--------------------
Confidence 46788899999999999988887 8899999999988888888888888888865 33
Q ss_pred HHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCC--CHhHHHHHHHHHHhcCCHHHHHHHHHH
Q 047932 129 TKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKP--DTVTYNTIIDGVCKEGFVDKAMELFLQ 206 (598)
Q Consensus 129 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~ 206 (598)
.+..+...|...|...|.-.+|+..++..+...+.......+ +...-.. ........+....++|-+
T Consensus 351 ---------~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLe 419 (579)
T KOG1125|consen 351 ---------TNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLE 419 (579)
T ss_pred ---------ccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHH
Confidence 256677788888889999999999999887654211100000 0000000 111122233445555655
Q ss_pred HhhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcC
Q 047932 207 MKDE-NINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPN 285 (598)
Q Consensus 207 ~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 285 (598)
+... +..+|...+..|.-.|.-.|++++|.+.|+..+... +-|..+||.|...++...+..+|+..|.+.++. .|.
T Consensus 420 aa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~ 496 (579)
T KOG1125|consen 420 AARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPG 496 (579)
T ss_pred HHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCC
Confidence 5443 444788888889889999999999999999988753 335668999999999999999999999999886 343
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047932 286 -TFVYNTLMDGFCLTGRVNHAKELFVSMES 314 (598)
Q Consensus 286 -~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 314 (598)
+.+...|.-+|...|.+++|.+.|-..+.
T Consensus 497 yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 497 YVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred eeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 45666677788899999999888876654
No 97
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.07 E-value=5.6e-07 Score=78.40 Aligned_cols=345 Identities=14% Similarity=0.131 Sum_probs=165.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhc------cHHHHHHHHHHHHHcCCCCCHhhHHH-HHHHH
Q 047932 78 FNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINC------RIMEAAALFTKLRVFGCEPDVFTYNT-LINGL 150 (598)
Q Consensus 78 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~------~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~ 150 (598)
+.+++..+.+..++++|++++....++ .|....-.+++.. .+..|...++++... .|...-|.. -...+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er--~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSL 88 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELER--SPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSL 88 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHH
Confidence 444555556666777777777665554 3333333333332 455555555555443 233333332 23444
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHH--HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 047932 151 CRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNT--IIDGVCKEGFVDKAMELFLQMKDENINPNVVTYNSLIHCFSH 228 (598)
Q Consensus 151 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~--li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 228 (598)
.+.+.+..|+.+...|.... +...-.. -.......+++..+..++++....| +..+.+.......+
T Consensus 89 Y~A~i~ADALrV~~~~~D~~---------~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllyk 156 (459)
T KOG4340|consen 89 YKACIYADALRVAFLLLDNP---------ALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYK 156 (459)
T ss_pred HHhcccHHHHHHHHHhcCCH---------HHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeec
Confidence 45555555555555543311 1111111 1112223455555555555554321 33344444444455
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcCHHHH----HHHHHHHHhcCCHHH
Q 047932 229 ADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVY----NTLMDGFCLTGRVNH 304 (598)
Q Consensus 229 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~----~~ll~~~~~~g~~~~ 304 (598)
.|+++.|.+-|+...+.+--.....|+. .-+..+.|+++.|++...+++++|++..+..- ...+.. ...|+.
T Consensus 157 egqyEaAvqkFqaAlqvsGyqpllAYni-ALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDv-rsvgNt-- 232 (459)
T KOG4340|consen 157 EGQYEAAVQKFQAALQVSGYQPLLAYNL-ALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDV-RSVGNT-- 232 (459)
T ss_pred cccHHHHHHHHHHHHhhcCCCchhHHHH-HHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCch-hcccch--
Confidence 5556666555555554322222333432 23344455555555555555555433111100 000000 000000
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 047932 305 AKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKG-IRPTVVTYSTLFLGLFEVHQVEHALKLFDEMQ 383 (598)
Q Consensus 305 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 383 (598)
.. |..+ .-...+|.-...+.+.++++.|.+.+..|.... ...|++|...+.-.- ..+++.....-+.-+.
T Consensus 233 -~~----lh~S---al~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL 303 (459)
T KOG4340|consen 233 -LV----LHQS---ALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLL 303 (459)
T ss_pred -HH----HHHH---HHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHH
Confidence 00 0000 011223444455678899999999998887542 344667766654332 2344555555555566
Q ss_pred hCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCC-CCHHHHHHHHHHHH-HcCCHHHHHHHHHHHH
Q 047932 384 HNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYE-LDIISYSCLIDGLC-KIGKLETAWELFQSLS 453 (598)
Q Consensus 384 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~ 453 (598)
..+ +-...+|..++-.||+..-++-|-+++.+-...... .+...|+ ++.+++ ..-..++|.+-++.+.
T Consensus 304 ~~n-PfP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La 373 (459)
T KOG4340|consen 304 QQN-PFPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLA 373 (459)
T ss_pred hcC-CCChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHH
Confidence 554 345678888888899998888888877553322111 1233333 333333 3446677766665544
No 98
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.02 E-value=3.3e-06 Score=93.31 Aligned_cols=337 Identities=11% Similarity=0.007 Sum_probs=214.4
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC------CCCH--hhHHHHHHH
Q 047932 189 DGVCKEGFVDKAMELFLQMKDENINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGV------HPNV--VTFSVIVDE 260 (598)
Q Consensus 189 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~~--~~~~~l~~~ 260 (598)
......|+++.+...++.+.......+..........+...|+++++..++......-- .+.. .....+...
T Consensus 382 ~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~ 461 (903)
T PRK04841 382 WSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQV 461 (903)
T ss_pred HHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHH
Confidence 34455677777777776653221111233334455566788999999999988754311 1111 122233445
Q ss_pred HHhCCCHHHHHHHHHHHHhcCCCcCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---CC--ChhhHHHHHHHH
Q 047932 261 LCKNGKMEEASRLLDLMIQIGVHPNT----FVYNTLMDGFCLTGRVNHAKELFVSMESNGC---MH--DVVSYTTLINGY 331 (598)
Q Consensus 261 ~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~ 331 (598)
+...|++++|...++.....-...+. ...+.+...+...|+++.|...+.+.....- .+ ....+..+...+
T Consensus 462 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~ 541 (903)
T PRK04841 462 AINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEIL 541 (903)
T ss_pred HHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHH
Confidence 67899999999999988763211121 2345566677889999999999988764311 11 123445567778
Q ss_pred HhcCCHHHHHHHHHHHccC----CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC--CCc--CHHHHHHHHHH
Q 047932 332 CKTKNVEEALNLYRKMLPK----GIR--P-TVVTYSTLFLGLFEVHQVEHALKLFDEMQHND--VAA--DTYIYNTFIDG 400 (598)
Q Consensus 332 ~~~~~~~~A~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~--~~~~~~~l~~~ 400 (598)
...|++++|...+.+.... +.. + ....+..+...+...|++++|...+.+..... ..+ ....+..+...
T Consensus 542 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 621 (903)
T PRK04841 542 FAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKI 621 (903)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHH
Confidence 8899999999998876542 211 1 22334455566777899999999998875431 111 23344556677
Q ss_pred HHHcCCHHHHHHHHHHHhhCC--CCCCHH--HH--HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHH
Q 047932 401 LCKNGFVLEALELFCAIGNSK--YELDII--SY--SCLIDGLCKIGKLETAWELFQSLSRVGLLPNV---VTYNIMIHGL 471 (598)
Q Consensus 401 ~~~~g~~~~A~~~~~~~~~~~--~~~~~~--~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~l~~~~ 471 (598)
+...|++++|...+..+.... ...... .. ...+..+...|+.+.|...+............ ..+..+..++
T Consensus 622 ~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~ 701 (903)
T PRK04841 622 SLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQ 701 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHH
Confidence 888999999999988875321 111111 10 11224455688999999998776542111111 1134566778
Q ss_pred HhcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCccccchhHHHHHHHhc
Q 047932 472 CNDGQMDKAHDLFLDMEAK----GVEPD-CVIFNTIMLGFIRNNETSKSSRGKLMSQMSSC 527 (598)
Q Consensus 472 ~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 527 (598)
...|++++|...++++... |...+ ..+...+..++.+.|+.++|.+ .+.++.+.
T Consensus 702 ~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~--~L~~Al~l 760 (903)
T PRK04841 702 ILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQR--VLLEALKL 760 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHH--HHHHHHHH
Confidence 8999999999999988753 32222 2456677788999999999999 99999876
No 99
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.01 E-value=1.1e-08 Score=94.02 Aligned_cols=146 Identities=17% Similarity=0.131 Sum_probs=66.4
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH----cCCH
Q 047932 367 FEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCK----IGKL 442 (598)
Q Consensus 367 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~ 442 (598)
...|++++|++++... .+.......+..+.+.++++.|.+.++.|.+.. .|. +...++.++.. .+.+
T Consensus 113 ~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD~-~l~qLa~awv~l~~g~e~~ 183 (290)
T PF04733_consen 113 FHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID--EDS-ILTQLAEAWVNLATGGEKY 183 (290)
T ss_dssp CCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CCH-HHHHHHHHHHHHHHTTTCC
T ss_pred HHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcH-HHHHHHHHHHHHHhCchhH
Confidence 3445555555544321 233444444555555555555555555554432 222 22222222221 2245
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCc-cccchhHHH
Q 047932 443 ETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFIRNNET-SKSSRGKLM 521 (598)
Q Consensus 443 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~ 521 (598)
.+|..+|+++.+. ..++..+.+.+..++...|++++|.+++.+....+ +-++.+...++.+....|+. +.+.+ ++
T Consensus 184 ~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~--~l 259 (290)
T PF04733_consen 184 QDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAER--YL 259 (290)
T ss_dssp CHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHH--HH
T ss_pred HHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHH--HH
Confidence 5555555555443 33455555555555555566666665555555433 33445555555555555555 33444 55
Q ss_pred HHHH
Q 047932 522 SQMS 525 (598)
Q Consensus 522 ~~~~ 525 (598)
+++.
T Consensus 260 ~qL~ 263 (290)
T PF04733_consen 260 SQLK 263 (290)
T ss_dssp HHCH
T ss_pred HHHH
Confidence 5554
No 100
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.00 E-value=9.8e-06 Score=89.60 Aligned_cols=339 Identities=10% Similarity=-0.018 Sum_probs=210.1
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC------CCC--HHH
Q 047932 147 INGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENI------NPN--VVT 218 (598)
Q Consensus 147 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~------~~~--~~~ 218 (598)
...+...|++..+...++.+.... ...+..........+...|+++++..++......-- .+. ...
T Consensus 381 a~~l~~~g~~~~l~~~l~~lp~~~------~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~ 454 (903)
T PRK04841 381 GWSLFNQGELSLLEECLNALPWEV------LLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEF 454 (903)
T ss_pred HHHHHhcCChHHHHHHHHhCCHHH------HhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHH
Confidence 334556777777777766552211 111222334445556678899999988887754310 111 112
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCC---C--cCHHHH
Q 047932 219 YNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNV----VTFSVIVDELCKNGKMEEASRLLDLMIQIGV---H--PNTFVY 289 (598)
Q Consensus 219 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~--~~~~~~ 289 (598)
...+...+...|++++|...++.........+. ...+.+...+...|++++|...+++...... . .....+
T Consensus 455 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~ 534 (903)
T PRK04841 455 NALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSL 534 (903)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHH
Confidence 223345566789999999999988763111121 2345566677889999999999888765311 1 112344
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHccCC--CCC--CHHH
Q 047932 290 NTLMDGFCLTGRVNHAKELFVSMESN----GCMH---DVVSYTTLINGYCKTKNVEEALNLYRKMLPKG--IRP--TVVT 358 (598)
Q Consensus 290 ~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~--~~~~ 358 (598)
..+...+...|+++.|...+++.... +... ....+..+...+...|++++|...+.+..... ..+ ....
T Consensus 535 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~ 614 (903)
T PRK04841 535 LQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQC 614 (903)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHH
Confidence 55667788899999999988876542 2111 12234455666777899999999888765421 111 2334
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCC--CCcCHH--H--HHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCH---HHH
Q 047932 359 YSTLFLGLFEVHQVEHALKLFDEMQHND--VAADTY--I--YNTFIDGLCKNGFVLEALELFCAIGNSKYELDI---ISY 429 (598)
Q Consensus 359 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~--~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~ 429 (598)
+..+...+...|+++.|...+..+.... ...... . ....+..+...|+.+.|..++............ ..+
T Consensus 615 ~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~ 694 (903)
T PRK04841 615 LAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQW 694 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHH
Confidence 4445667778999999999988875421 111110 0 011224445678999999988776542211111 123
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 047932 430 SCLIDGLCKIGKLETAWELFQSLSRV----GLLPN-VVTYNIMIHGLCNDGQMDKAHDLFLDMEAKG 491 (598)
Q Consensus 430 ~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 491 (598)
..+..++...|++++|...+++.... |...+ ..+...+..++.+.|+.++|...+.++.+..
T Consensus 695 ~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 695 RNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 56777788899999999999987652 22222 2456667778889999999999999998764
No 101
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.98 E-value=1.5e-07 Score=89.55 Aligned_cols=221 Identities=15% Similarity=0.145 Sum_probs=140.0
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 047932 147 INGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTYNSLIHCF 226 (598)
Q Consensus 147 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 226 (598)
...+.+.|++.+|.-.|+..++.+ |-+...|..|......+++-..|+..+++..+.... +..+.-.|.-.|
T Consensus 292 G~~lm~nG~L~~A~LafEAAVkqd-------P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSy 363 (579)
T KOG1125|consen 292 GCNLMKNGDLSEAALAFEAAVKQD-------PQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSY 363 (579)
T ss_pred HHHHHhcCCchHHHHHHHHHHhhC-------hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHH
Confidence 444667788888888888887776 556778888888888888878888888887776433 667777777778
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHH-----------HHHHhCCCHHHHHHHHHHH-HhcCCCcCHHHHHHHHH
Q 047932 227 SHADDWNEAKRLFIKMMDQGVHPNVVTFSVIV-----------DELCKNGKMEEASRLLDLM-IQIGVHPNTFVYNTLMD 294 (598)
Q Consensus 227 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-----------~~~~~~g~~~~a~~~~~~~-~~~~~~~~~~~~~~ll~ 294 (598)
...|.-..|.+.++..+....+ |..+. ..+.....+....++|-++ .+.+..+|..+...|.-
T Consensus 364 tNeg~q~~Al~~L~~Wi~~~p~-----y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGV 438 (579)
T KOG1125|consen 364 TNEGLQNQALKMLDKWIRNKPK-----YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGV 438 (579)
T ss_pred hhhhhHHHHHHHHHHHHHhCcc-----chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHH
Confidence 8888888888888777654211 00000 0111111122333333333 33344456666666666
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCC-HHHHHHHHHHHHhcCCHH
Q 047932 295 GFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPT-VVTYSTLFLGLFEVHQVE 373 (598)
Q Consensus 295 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~ 373 (598)
.|.-.|++++|...|+.++... |.|...||.|...++...+..+|+..|+++++. .|+ +.+...|.-+|...|.++
T Consensus 439 Ly~ls~efdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~yk 515 (579)
T KOG1125|consen 439 LYNLSGEFDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYK 515 (579)
T ss_pred HHhcchHHHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHH
Confidence 6777777777777777776654 446667777777777777777777777777664 333 234445555666777777
Q ss_pred HHHHHHHHHh
Q 047932 374 HALKLFDEMQ 383 (598)
Q Consensus 374 ~a~~~~~~~~ 383 (598)
+|.+.|-.++
T Consensus 516 EA~~hlL~AL 525 (579)
T KOG1125|consen 516 EAVKHLLEAL 525 (579)
T ss_pred HHHHHHHHHH
Confidence 7766665543
No 102
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.97 E-value=1.4e-05 Score=78.43 Aligned_cols=190 Identities=17% Similarity=0.209 Sum_probs=88.2
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHH
Q 047932 190 GVCKEGFVDKAMELFLQMKDENINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEE 269 (598)
Q Consensus 190 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 269 (598)
+......+.+|+.+++.+.... ....-|..+...|...|+++.|.++|.+. ..++..+..|.+.|++..
T Consensus 741 aai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~d 809 (1636)
T KOG3616|consen 741 AAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWED 809 (1636)
T ss_pred HHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHH
Confidence 3344455555555555554431 12223444555556666666666555332 123344555566666666
Q ss_pred HHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHcc
Q 047932 270 ASRLLDLMIQIGVHPNTFVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLP 349 (598)
Q Consensus 270 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 349 (598)
|.++-.+.. |.......|.+-..-.-..|++.+|+++|-.+.. |+ .-|.+|-+.|..+..+++..+-..
T Consensus 810 a~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~~----p~-----~aiqmydk~~~~ddmirlv~k~h~ 878 (1636)
T KOG3616|consen 810 AFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGE----PD-----KAIQMYDKHGLDDDMIRLVEKHHG 878 (1636)
T ss_pred HHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEccC----ch-----HHHHHHHhhCcchHHHHHHHHhCh
Confidence 555544432 2233334444444445555555555555433221 12 224455555555555555544332
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHH
Q 047932 350 KGIRPTVVTYSTLFLGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALEL 413 (598)
Q Consensus 350 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 413 (598)
.. -..|-..+..-+...|+...|...|-+..+ |.+-+++|...+.+++|.++
T Consensus 879 d~---l~dt~~~f~~e~e~~g~lkaae~~flea~d---------~kaavnmyk~s~lw~dayri 930 (1636)
T KOG3616|consen 879 DH---LHDTHKHFAKELEAEGDLKAAEEHFLEAGD---------FKAAVNMYKASELWEDAYRI 930 (1636)
T ss_pred hh---hhHHHHHHHHHHHhccChhHHHHHHHhhhh---------HHHHHHHhhhhhhHHHHHHH
Confidence 11 112333344445555555555555433322 23334444445555554444
No 103
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.94 E-value=5.3e-05 Score=72.03 Aligned_cols=152 Identities=12% Similarity=0.121 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Q 047932 372 VEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYEL-DIISYSCLIDGLCKIGKLETAWELFQ 450 (598)
Q Consensus 372 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~ 450 (598)
.+....+++++.......-..+|..+++...+..-+..|..+|.++.+.+..+ ++.++++++..|+ .++.+-|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHH
Confidence 45555566665543222223455666666677777778888888877665555 5566666666554 467777888877
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCccccchhHHHHHHHhc
Q 047932 451 SLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPDC--VIFNTIMLGFIRNNETSKSSRGKLMSQMSSC 527 (598)
Q Consensus 451 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 527 (598)
--+.. +..+...-...+..+.+.++-..|..+|++.+..+++|+. ..|..++.-=..-|+...+.+ +-+++...
T Consensus 426 LGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~--lekR~~~a 501 (656)
T KOG1914|consen 426 LGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILK--LEKRRFTA 501 (656)
T ss_pred HHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHH--HHHHHHHh
Confidence 65443 2223344455666677777777888888888777555543 677777777777777777777 66666544
No 104
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.91 E-value=1.1e-07 Score=87.53 Aligned_cols=148 Identities=16% Similarity=0.109 Sum_probs=60.7
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHh----cCC
Q 047932 296 FCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFE----VHQ 371 (598)
Q Consensus 296 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~ 371 (598)
+...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+.+ .| .+...+..++.. .+.
T Consensus 112 ~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD-~~l~qLa~awv~l~~g~e~ 182 (290)
T PF04733_consen 112 LFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID--ED-SILTQLAEAWVNLATGGEK 182 (290)
T ss_dssp HCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CC-HHHHHHHHHHHHHHHTTTC
T ss_pred HHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--Cc-HHHHHHHHHHHHHHhCchh
Confidence 34445555555444322 133344444455555555555555555554431 12 222222222221 123
Q ss_pred HHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHH
Q 047932 372 VEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKL-ETAWELFQ 450 (598)
Q Consensus 372 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~ 450 (598)
+.+|..+|+++.+. ..+++.+.+.+..++...|++++|..++.+....+ +-++.++..++.+....|+. +.+.+++.
T Consensus 183 ~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~ 260 (290)
T PF04733_consen 183 YQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLS 260 (290)
T ss_dssp CCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence 44555555554433 23344444444444445555555555544444332 22333444444444444444 33444444
Q ss_pred HHHh
Q 047932 451 SLSR 454 (598)
Q Consensus 451 ~~~~ 454 (598)
++..
T Consensus 261 qL~~ 264 (290)
T PF04733_consen 261 QLKQ 264 (290)
T ss_dssp HCHH
T ss_pred HHHH
Confidence 4443
No 105
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.89 E-value=3.2e-05 Score=78.73 Aligned_cols=366 Identities=13% Similarity=0.174 Sum_probs=179.5
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCCCHHh-----HHHHHhccHHHHHHHHHHHHHcCCCCCHhhH
Q 047932 70 PSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTG-LFPDLYT-----HSILINCRIMEAAALFTKLRVFGCEPDVFTY 143 (598)
Q Consensus 70 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~-----~~~ll~~~~~~a~~~~~~~~~~~~~~~~~~~ 143 (598)
|...+++.-...+.++...+-+.+.++++++..-.. ....... ..+.+.++.....+..+++...+. |
T Consensus 979 ~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa-~----- 1052 (1666)
T KOG0985|consen 979 PETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDA-P----- 1052 (1666)
T ss_pred CccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCc-h-----
Confidence 334677888888889999999999999999876321 1111111 112222255555555555544321 1
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCC----------------CCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047932 144 NTLINGLCRTGHTIVALNLFEEMANGNG----------------EFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQM 207 (598)
Q Consensus 144 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 207 (598)
.+......++-+++|..+|++..-... +|.. --..+..|..+..+-.+.|...+|++-|-+.
T Consensus 1053 -~ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe-~~n~p~vWsqlakAQL~~~~v~dAieSyika 1130 (1666)
T KOG0985|consen 1053 -DIAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAE-RCNEPAVWSQLAKAQLQGGLVKDAIESYIKA 1130 (1666)
T ss_pred -hHHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHH-hhCChHHHHHHHHHHHhcCchHHHHHHHHhc
Confidence 233444455555666666655321100 0000 0011334444444444444444444443221
Q ss_pred hhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcCHH
Q 047932 208 KDENINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTF 287 (598)
Q Consensus 208 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 287 (598)
.|+..|..++....+.|.|++-.+.+....+....|... +.++-+|++.+++.+.+..+ .-|+..
T Consensus 1131 ------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi-------~gpN~A 1195 (1666)
T KOG0985|consen 1131 ------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFI-------AGPNVA 1195 (1666)
T ss_pred ------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHh-------cCCCch
Confidence 144445555555555555555555444444433333322 23444455554444433222 123444
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHHH
Q 047932 288 VYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLF 367 (598)
Q Consensus 288 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 367 (598)
....+..-|...|.++.|.-+|.. +..|..|...+...|++..|.+.-++.. +..+|..+-.+|.
T Consensus 1196 ~i~~vGdrcf~~~~y~aAkl~y~~---------vSN~a~La~TLV~LgeyQ~AVD~aRKAn------s~ktWK~VcfaCv 1260 (1666)
T KOG0985|consen 1196 NIQQVGDRCFEEKMYEAAKLLYSN---------VSNFAKLASTLVYLGEYQGAVDAARKAN------STKTWKEVCFACV 1260 (1666)
T ss_pred hHHHHhHHHhhhhhhHHHHHHHHH---------hhhHHHHHHHHHHHHHHHHHHHHhhhcc------chhHHHHHHHHHh
Confidence 444444444455555555444432 2235555555555666666555444332 4455665555555
Q ss_pred hcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 047932 368 EVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWE 447 (598)
Q Consensus 368 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 447 (598)
..+.+.-| +|-..++-....-...++..|...|-+++-+.+++..+... +.....|+.|.-.|.+- ++++..+
T Consensus 1261 d~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLE-RAHMgmfTELaiLYsky-kp~km~E 1333 (1666)
T KOG0985|consen 1261 DKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLE-RAHMGMFTELAILYSKY-KPEKMME 1333 (1666)
T ss_pred chhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchh-HHHHHHHHHHHHHHHhc-CHHHHHH
Confidence 54444322 22223333445556677888888888888888887766432 33455666666666653 3444444
Q ss_pred HHHHHHh-CCCC------CCHHHHHHHHHHHHhcCCHHHH
Q 047932 448 LFQSLSR-VGLL------PNVVTYNIMIHGLCNDGQMDKA 480 (598)
Q Consensus 448 ~~~~~~~-~~~~------p~~~~~~~l~~~~~~~g~~~~A 480 (598)
.++-.-. .+++ -....|..++-.|.+-..++.|
T Consensus 1334 Hl~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNA 1373 (1666)
T KOG0985|consen 1334 HLKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNA 1373 (1666)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Confidence 3333221 1111 1234566666666655555554
No 106
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.87 E-value=3.1e-05 Score=78.86 Aligned_cols=361 Identities=13% Similarity=0.096 Sum_probs=175.0
Q ss_pred CCHHhHHHHHhccHHHHHHHHHHHHHcCC--CCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHH
Q 047932 108 PDLYTHSILINCRIMEAAALFTKLRVFGC--EPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYN 185 (598)
Q Consensus 108 p~~~~~~~ll~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (598)
.|...|..++...-.--+.+.++..+-+. ..|.......+.++...+-+.+-+++++++.-.+.. +..+...-|
T Consensus 950 ~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~----Fse~~nLQn 1025 (1666)
T KOG0985|consen 950 SDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSV----FSENRNLQN 1025 (1666)
T ss_pred cChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcc----cccchhhhh
Confidence 45556666665522233445555544322 235556677788888999999999999998865532 223333444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-------------------
Q 047932 186 TIIDGVCKEGFVDKAMELFLQMKDENINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQG------------------- 246 (598)
Q Consensus 186 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------------------- 246 (598)
.|+-...+. +..+..+..+++-.-+. |+ +.......+-+++|..+|++.-..+
T Consensus 1026 LLiLtAika-d~trVm~YI~rLdnyDa-~~------ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~ef 1097 (1666)
T KOG0985|consen 1026 LLILTAIKA-DRTRVMEYINRLDNYDA-PD------IAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEF 1097 (1666)
T ss_pred hHHHHHhhc-ChHHHHHHHHHhccCCc-hh------HHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHH
Confidence 444443333 34455555555543211 11 2233344455555555555431100
Q ss_pred --CCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhH
Q 047932 247 --VHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSY 324 (598)
Q Consensus 247 --~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 324 (598)
---.+..|..+..+-.+.|.+.+|++.|-+. .|+..|..++....+.|.+++-.+.+....+..-.|. .-
T Consensus 1098 Ae~~n~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~--id 1169 (1666)
T KOG0985|consen 1098 AERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPY--ID 1169 (1666)
T ss_pred HHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCcc--ch
Confidence 0012234444444444444444444433221 1444444555555555555555544444444322222 22
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHc
Q 047932 325 TTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKN 404 (598)
Q Consensus 325 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 404 (598)
..|+-+|++.++..+-.+.+. -|+......+..-|...+.++.|.-+|... .-|..+...+...
T Consensus 1170 ~eLi~AyAkt~rl~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~L 1233 (1666)
T KOG0985|consen 1170 SELIFAYAKTNRLTELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYL 1233 (1666)
T ss_pred HHHHHHHHHhchHHHHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHH
Confidence 344444555444444333221 234444444444444455555444444322 2234444555555
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 047932 405 GFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLF 484 (598)
Q Consensus 405 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 484 (598)
|++..|.+.-+++. +..+|..+..+|...+.+.-| +|...++-....-...++..|-..|-+++.+.++
T Consensus 1234 geyQ~AVD~aRKAn------s~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~ 1302 (1666)
T KOG0985|consen 1234 GEYQGAVDAARKAN------STKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLL 1302 (1666)
T ss_pred HHHHHHHHHhhhcc------chhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHH
Confidence 55555554433322 445566555555555444333 1222222333444566777777778888877777
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCccccch
Q 047932 485 LDMEAKGVEPDCVIFNTIMLGFIRNNETSKSSR 517 (598)
Q Consensus 485 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 517 (598)
+..+... ......|+-|.-.|.+- ++++-.+
T Consensus 1303 Ea~LGLE-RAHMgmfTELaiLYsky-kp~km~E 1333 (1666)
T KOG0985|consen 1303 EAGLGLE-RAHMGMFTELAILYSKY-KPEKMME 1333 (1666)
T ss_pred Hhhhchh-HHHHHHHHHHHHHHHhc-CHHHHHH
Confidence 7665321 22334555555555543 3444444
No 107
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.86 E-value=9.7e-05 Score=70.33 Aligned_cols=114 Identities=11% Similarity=0.158 Sum_probs=74.8
Q ss_pred CCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhc------c----H
Q 047932 52 LITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINC------R----I 121 (598)
Q Consensus 52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~------~----~ 121 (598)
...++++++.++++...-|. .+.+|...+....+..+++.+..+|.+++..- -+...|...|.- . .
T Consensus 32 t~~~~~~R~~YEq~~~~FP~--s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDLW~lYl~YVR~~~~~~~~~r 107 (656)
T KOG1914|consen 32 TQPIDKVRETYEQLVNVFPS--SPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDLWKLYLSYVRETKGKLFGYR 107 (656)
T ss_pred cCCHHHHHHHHHHHhccCCC--CcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhHHHHHHHHHHHHccCcchHH
Confidence 34789999999999987776 88999999999999999999999999998763 334444444433 1 1
Q ss_pred HHHHHHHHHH-HHcCCCCCH-hhHHHHHHHHH---------hcCChhHHHHHHHHHHhc
Q 047932 122 MEAAALFTKL-RVFGCEPDV-FTYNTLINGLC---------RTGHTIVALNLFEEMANG 169 (598)
Q Consensus 122 ~~a~~~~~~~-~~~~~~~~~-~~~~~l~~~~~---------~~g~~~~A~~~~~~~~~~ 169 (598)
+.-.+.|+-. .+.|+.+-. ..|+..+..+- .+-+.+...+++++++..
T Consensus 108 ~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~t 166 (656)
T KOG1914|consen 108 EKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVT 166 (656)
T ss_pred HHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcC
Confidence 2223334433 234443332 33555554332 233556677788888764
No 108
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.86 E-value=1.9e-06 Score=90.29 Aligned_cols=223 Identities=13% Similarity=0.076 Sum_probs=115.7
Q ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhccHHHHHHHHHHHHHcCC
Q 047932 57 EALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCRIMEAAALFTKLRVFGC 136 (598)
Q Consensus 57 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~a~~~~~~~~~~~~ 136 (598)
+-.+=|++..+.+|+ +...|...+....+.++.+.|++++++++.. |.+....
T Consensus 1442 esaeDferlvrssPN--SSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REee------------------------ 1494 (1710)
T KOG1070|consen 1442 ESAEDFERLVRSSPN--SSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEE------------------------ 1494 (1710)
T ss_pred cCHHHHHHHHhcCCC--cchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhH------------------------
Confidence 344567778888887 8889999999999999999999999999864 2221100
Q ss_pred CCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH
Q 047932 137 EPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNV 216 (598)
Q Consensus 137 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 216 (598)
--...|.++++.-...|.-+...++|+++.+-. .....|..|...|.+.+.+++|.++++.|.+. .....
T Consensus 1495 -EKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--------d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~ 1564 (1710)
T KOG1070|consen 1495 -EKLNIWIAYLNLENAYGTEESLKKVFERACQYC--------DAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTR 1564 (1710)
T ss_pred -HHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--------chHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchh
Confidence 011234444444444444444455555554421 12334444555555555555555555555443 12234
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHH
Q 047932 217 VTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHP-NVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTLMDG 295 (598)
Q Consensus 217 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 295 (598)
..|...+..+.+.++-+.|..++.+.++.-.+. ........+..-.+.|+.+.+..+|+-.+... +--...|+..+..
T Consensus 1565 ~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~ 1643 (1710)
T KOG1070|consen 1565 KVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDM 1643 (1710)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHH
Confidence 445555555555555555555555544431110 11122223333344555555555555544432 1234445555555
Q ss_pred HHhcCCHHHHHHHHHHHHHCCC
Q 047932 296 FCLTGRVNHAKELFVSMESNGC 317 (598)
Q Consensus 296 ~~~~g~~~~a~~~~~~~~~~~~ 317 (598)
-.+.|+.+.+..+|+++...++
T Consensus 1644 eik~~~~~~vR~lfeRvi~l~l 1665 (1710)
T KOG1070|consen 1644 EIKHGDIKYVRDLFERVIELKL 1665 (1710)
T ss_pred HHccCCHHHHHHHHHHHHhcCC
Confidence 5555555555555555554443
No 109
>PLN02789 farnesyltranstransferase
Probab=98.82 E-value=1.3e-05 Score=74.77 Aligned_cols=214 Identities=12% Similarity=0.052 Sum_probs=149.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcC-CHHHHHHHHHHHhhCCCCCCHHHHHH
Q 047932 143 YNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEG-FVDKAMELFLQMKDENINPNVVTYNS 221 (598)
Q Consensus 143 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~ 221 (598)
+..+-.++...++.++|+.+.++++..+ +.+..+|+....++...| ++++++..++.+.+.+.+ +..+|+.
T Consensus 40 ~~~~ra~l~~~e~serAL~lt~~aI~ln-------P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~ 111 (320)
T PLN02789 40 MDYFRAVYASDERSPRALDLTADVIRLN-------PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHH 111 (320)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHC-------chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHH
Confidence 3444445556788899999999998876 455667777777777777 578999999998887544 6667777
Q ss_pred HHHHHHhcCCH--HHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhc
Q 047932 222 LIHCFSHADDW--NEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTLMDGFCLT 299 (598)
Q Consensus 222 l~~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 299 (598)
....+.+.|+. ++++.+++++++.. +-+..+|+....++...|+++++++.++++++.+.. +..+|+.....+.+.
T Consensus 112 R~~~l~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~ 189 (320)
T PLN02789 112 RRWLAEKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRS 189 (320)
T ss_pred HHHHHHHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhc
Confidence 66666666653 67888888888764 347788888888888899999999999999887644 566666665555443
Q ss_pred ---CCH----HHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc----CCHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHh
Q 047932 300 ---GRV----NHAKELFVSMESNGCMHDVVSYTTLINGYCKT----KNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFE 368 (598)
Q Consensus 300 ---g~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 368 (598)
|.. +........++... |.+...|+.+...+... +...+|.+.+.+....++. +......++..|+.
T Consensus 190 ~~l~~~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~-s~~al~~l~d~~~~ 267 (320)
T PLN02789 190 PLLGGLEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN-HVFALSDLLDLLCE 267 (320)
T ss_pred cccccccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCC-cHHHHHHHHHHHHh
Confidence 222 45666665666553 55777888887777663 3345677777776654332 55666666666654
No 110
>PLN02789 farnesyltranstransferase
Probab=98.81 E-value=3.8e-06 Score=78.38 Aligned_cols=205 Identities=12% Similarity=0.126 Sum_probs=125.8
Q ss_pred cCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHhCCCCCCHHhHHHHHhccHHHHHHHHH
Q 047932 51 NLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNK-HYDTVLSLFKRLNSTGLFPDLYTHSILINCRIMEAAALFT 129 (598)
Q Consensus 51 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~a~~~~~ 129 (598)
..+..++|+..++.++..+|. +..+|+....++...| ++++++..++++++.. |+
T Consensus 49 ~~e~serAL~lt~~aI~lnP~--~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n--pk-------------------- 104 (320)
T PLN02789 49 SDERSPRALDLTADVIRLNPG--NYTVWHFRRLCLEALDADLEEELDFAEDVAEDN--PK-------------------- 104 (320)
T ss_pred cCCCCHHHHHHHHHHHHHCch--hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC--Cc--------------------
Confidence 566788999999999998887 7788887777777776 5677788777777542 22
Q ss_pred HHHHcCCCCCHhhHHHHHHHHHhcCCh--hHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047932 130 KLRVFGCEPDVFTYNTLINGLCRTGHT--IVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQM 207 (598)
Q Consensus 130 ~~~~~~~~~~~~~~~~l~~~~~~~g~~--~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 207 (598)
+..+|+....++.+.|+. ++++..++++.+.+ +.|..+|+....++...|+++++++.++++
T Consensus 105 ---------nyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~d-------pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~ 168 (320)
T PLN02789 105 ---------NYQIWHHRRWLAEKLGPDAANKELEFTRKILSLD-------AKNYHAWSHRQWVLRTLGGWEDELEYCHQL 168 (320)
T ss_pred ---------chHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhC-------cccHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 333444443334444432 45666776776665 456677777777777777777777777777
Q ss_pred hhCCCCCCHHHHHHHHHHHHhc---CC----HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhC----CCHHHHHHHHHH
Q 047932 208 KDENINPNVVTYNSLIHCFSHA---DD----WNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKN----GKMEEASRLLDL 276 (598)
Q Consensus 208 ~~~~~~~~~~~~~~l~~~~~~~---~~----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~a~~~~~~ 276 (598)
++.++. +..+|+....++.+. |. .++.++...+++... +-|...|+.+...+... +...+|.+.+.+
T Consensus 169 I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~ 246 (320)
T PLN02789 169 LEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLE 246 (320)
T ss_pred HHHCCC-chhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHH
Confidence 766544 556666555544433 21 234555555555542 33556666666666552 334456666666
Q ss_pred HHhcCCCcCHHHHHHHHHHHHh
Q 047932 277 MIQIGVHPNTFVYNTLMDGFCL 298 (598)
Q Consensus 277 ~~~~~~~~~~~~~~~ll~~~~~ 298 (598)
..+.+ ..+......|+..|+.
T Consensus 247 ~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 247 VLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred hhccc-CCcHHHHHHHHHHHHh
Confidence 55533 2244555556666553
No 111
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.80 E-value=9.3e-07 Score=86.63 Aligned_cols=238 Identities=11% Similarity=0.062 Sum_probs=186.5
Q ss_pred CCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHH
Q 047932 248 HPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTL 327 (598)
Q Consensus 248 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 327 (598)
+|-...-..+...+.+.|-...|..+++++. .+...+.+|...|+..+|..+..+..+. +|++..|..+
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~L 463 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLL 463 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHh
Confidence 3333344557778889999999999998764 4666788999999999999999988884 7899999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCH
Q 047932 328 INGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFV 407 (598)
Q Consensus 328 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 407 (598)
+.......-+++|.++.+..... .-..+.....+.++++++.+.|+.-.+.+ +....+|.....+..+.+++
T Consensus 464 GDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~ 535 (777)
T KOG1128|consen 464 GDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKE 535 (777)
T ss_pred hhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhh
Confidence 99888888889999998875432 22223333445789999999999887764 55677888888889999999
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047932 408 LEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDM 487 (598)
Q Consensus 408 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 487 (598)
+.|...|....... +.+...||.+..+|.+.++-.+|...+++..+.+ .-+...|...+....+-|.+++|++.+.++
T Consensus 536 q~av~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 536 QAAVKAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHHHHHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 99999999988653 4467799999999999999999999999999976 446677888888889999999999999998
Q ss_pred HHCC-CCCCHHHHHHHHHHH
Q 047932 488 EAKG-VEPDCVIFNTIMLGF 506 (598)
Q Consensus 488 ~~~~-~~p~~~~~~~l~~~~ 506 (598)
.... ..-|......++...
T Consensus 614 l~~~~~~~d~~vl~~iv~~~ 633 (777)
T KOG1128|consen 614 LDLRKKYKDDEVLLIIVRTV 633 (777)
T ss_pred HHhhhhcccchhhHHHHHHH
Confidence 7541 112444444444443
No 112
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.80 E-value=9.4e-05 Score=73.86 Aligned_cols=336 Identities=14% Similarity=0.125 Sum_probs=178.9
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHH
Q 047932 139 DVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVT 218 (598)
Q Consensus 139 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 218 (598)
|...|.-...-+...|+.+.|+.+|..+. .|.+++...|-+|+.++|-++-++-. |...
T Consensus 911 d~~L~~WWgqYlES~GemdaAl~~Y~~A~---------------D~fs~VrI~C~qGk~~kAa~iA~esg------d~AA 969 (1416)
T KOG3617|consen 911 DESLYSWWGQYLESVGEMDAALSFYSSAK---------------DYFSMVRIKCIQGKTDKAARIAEESG------DKAA 969 (1416)
T ss_pred chHHHHHHHHHHhcccchHHHHHHHHHhh---------------hhhhheeeEeeccCchHHHHHHHhcc------cHHH
Confidence 44445555555566788888888887653 35677888888999999988876543 5556
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh---------------CCCHHHHHHHHHHHHhcCCC
Q 047932 219 YNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCK---------------NGKMEEASRLLDLMIQIGVH 283 (598)
Q Consensus 219 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------------~g~~~~a~~~~~~~~~~~~~ 283 (598)
...|.+.|-..|++.+|...|.+... +...|+.|-. ..+.-.|-++|++. |.
T Consensus 970 cYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~---g~- 1036 (1416)
T KOG3617|consen 970 CYHLARMYENDGDVVKAVKFFTRAQA---------FSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEEL---GG- 1036 (1416)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHc---ch-
Confidence 66788999999999999999887653 2222222211 11222233333332 10
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHHH--------HHHCC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHcc----
Q 047932 284 PNTFVYNTLMDGFCLTGRVNHAKELFVS--------MESNG--CMHDVVSYTTLINGYCKTKNVEEALNLYRKMLP---- 349 (598)
Q Consensus 284 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~--------~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---- 349 (598)
-+...+..|-+.|.+.+|+++-=+ ++..+ ...|+...+.-...++...++++|..++-...+
T Consensus 1037 ----~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~A 1112 (1416)
T KOG3617|consen 1037 ----YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGA 1112 (1416)
T ss_pred ----hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 112223446666666666554211 11111 123455555555556666666666655433211
Q ss_pred ------CC----------------CCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHH
Q 047932 350 ------KG----------------IRPTV----VTYSTLFLGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCK 403 (598)
Q Consensus 350 ------~~----------------~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 403 (598)
.| -.|+. .....+...|.++|.+..|.+-|.++-.. ...++++.+
T Consensus 1113 lqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGdK---------l~AMraLLK 1183 (1416)
T KOG3617|consen 1113 LQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAGDK---------LSAMRALLK 1183 (1416)
T ss_pred HHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhhH---------HHHHHHHHh
Confidence 11 12222 34556667788888888877766543211 011222222
Q ss_pred cCCHH----------------------------HHHHHHHHHhhCCCCCCHHHHHHHHHHHH---------------HcC
Q 047932 404 NGFVL----------------------------EALELFCAIGNSKYELDIISYSCLIDGLC---------------KIG 440 (598)
Q Consensus 404 ~g~~~----------------------------~A~~~~~~~~~~~~~~~~~~~~~l~~~~~---------------~~g 440 (598)
.|+.+ .--++.+.+... -.....+..|...|. ..|
T Consensus 1184 SGdt~KI~FFAn~sRqkEiYImAANyLQtlDWq~~pq~mK~I~tF--YTKgqafd~LanFY~~cAqiEiee~q~ydKa~g 1261 (1416)
T KOG3617|consen 1184 SGDTQKIRFFANTSRQKEIYIMAANYLQTLDWQDNPQTMKDIETF--YTKGQAFDHLANFYKSCAQIEIEELQTYDKAMG 1261 (1416)
T ss_pred cCCcceEEEEeeccccceeeeehhhhhhhcccccChHHHhhhHhh--hhcchhHHHHHHHHHHHHHhhHHHHhhhhHHhH
Confidence 23222 111111111100 000111222222221 124
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHH----------HHHH-hcCCHHHHHHHHHHHHHCCCCC----CHHHHHHHHHH
Q 047932 441 KLETAWELFQSLSRVGLLPNVVTYNIMI----------HGLC-NDGQMDKAHDLFLDMEAKGVEP----DCVIFNTIMLG 505 (598)
Q Consensus 441 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~----------~~~~-~~g~~~~A~~~~~~~~~~~~~p----~~~~~~~l~~~ 505 (598)
-.++|-+.+.++...+. ....++.|- ...- -..+....++-...|....+-| -...|..++..
T Consensus 1262 Al~eA~kCl~ka~~k~~--~~t~l~~Lq~~~a~vk~~l~~~q~~~eD~~~~i~qc~~lleep~ld~~Ir~~~~~a~lie~ 1339 (1416)
T KOG3617|consen 1262 ALEEAAKCLLKAEQKNM--STTGLDALQEDLAKVKVQLRKLQIMKEDAADGIRQCTTLLEEPILDDIIRCTRLFALLIED 1339 (1416)
T ss_pred HHHHHHHHHHHHHhhcc--hHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhCcCCCCcchhHHHHHHHHHH
Confidence 45666666666665421 122232222 1111 1236666666677777653333 34678889999
Q ss_pred HHhcCCccccchhHHHHHHHhc
Q 047932 506 FIRNNETSKSSRGKLMSQMSSC 527 (598)
Q Consensus 506 ~~~~g~~~~A~~~~~~~~~~~~ 527 (598)
+....++..|.+ .++.|.++
T Consensus 1340 ~v~~k~y~~AyR--al~el~~k 1359 (1416)
T KOG3617|consen 1340 HVSRKNYKPAYR--ALTELQKK 1359 (1416)
T ss_pred HHhhhhccHHHH--HHHHHhhc
Confidence 999999999999 99999888
No 113
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.79 E-value=5.2e-06 Score=87.14 Aligned_cols=203 Identities=16% Similarity=0.113 Sum_probs=99.4
Q ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHhc-CCCc---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHH
Q 047932 252 VTFSVIVDELCKNGKMEEASRLLDLMIQI-GVHP---NTFVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTL 327 (598)
Q Consensus 252 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 327 (598)
..|-..|......++.++|.++.++++.. ++.- -...|.++++.-..-|.-+...++|+++.+.- .....|..|
T Consensus 1459 i~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~~L 1536 (1710)
T KOG1070|consen 1459 ILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHLKL 1536 (1710)
T ss_pred hHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHHHH
Confidence 34555555555556666666665555442 1100 12244444444444455555555555555431 122334555
Q ss_pred HHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCc--CHHHHHHHHHHHHHcC
Q 047932 328 INGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFEVHQVEHALKLFDEMQHNDVAA--DTYIYNTFIDGLCKNG 405 (598)
Q Consensus 328 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g 405 (598)
...|.+.+.+++|.++++.|.+.- .-....|...+..+.+.++-+.|..++.++++.- +. ......-.+..-.+.|
T Consensus 1537 ~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~l-Pk~eHv~~IskfAqLEFk~G 1614 (1710)
T KOG1070|consen 1537 LGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKSL-PKQEHVEFISKFAQLEFKYG 1614 (1710)
T ss_pred HHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhc-chhhhHHHHHHHHHHHhhcC
Confidence 555555555555555555555441 1234455555555555555555555555555431 11 2223333344444555
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 047932 406 FVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLP 459 (598)
Q Consensus 406 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 459 (598)
+.+.+..+|+..+... +.-...|+.++..-.++|+.+.+..+|++....++.|
T Consensus 1615 DaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1615 DAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred CchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 5555555555554332 2234455555555555555555555555555544443
No 114
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.78 E-value=0.00033 Score=71.02 Aligned_cols=55 Identities=20% Similarity=0.219 Sum_probs=39.7
Q ss_pred cccCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 047932 49 DINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTG 105 (598)
Q Consensus 49 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 105 (598)
.+..+++..|+.-.++.++.+|..+.+.++.++ .+.+.|+.++|..+++.....+
T Consensus 19 ~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaL--sl~r~gk~~ea~~~Le~~~~~~ 73 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKHPNALYAKVLKAL--SLFRLGKGDEALKLLEALYGLK 73 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHH--HHHHhcCchhHHHHHhhhccCC
Confidence 346677899999999999999873333333333 3568899999998888766543
No 115
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.75 E-value=7.5e-06 Score=85.19 Aligned_cols=281 Identities=10% Similarity=0.075 Sum_probs=146.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcCHHHHHHHH
Q 047932 215 NVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNV-VTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTLM 293 (598)
Q Consensus 215 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll 293 (598)
+...+..|+..+...+++++|.++.+...+. .|+. ..|..+...+.+.++.+.+.-+ .++
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~l 90 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL-----------------NLI 90 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh-----------------hhh
Confidence 3445666666666666666666666655543 2332 2333333344455554333322 122
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHhcCCHH
Q 047932 294 DGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFEVHQVE 373 (598)
Q Consensus 294 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 373 (598)
.......++..+..++..+... ..+...+..+..+|-+.|+.++|..+|+++.+.++. |..+.+.+...|+.. +.+
T Consensus 91 ~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~-dL~ 166 (906)
T PRK14720 91 DSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE-DKE 166 (906)
T ss_pred hhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-hHH
Confidence 2222233333333333344432 223445666666677777777777777777666532 566666666666666 777
Q ss_pred HHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 047932 374 HALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLS 453 (598)
Q Consensus 374 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 453 (598)
+|..++.+++.. +...+++..+..+|.++.... +.+...+. ++.+.+.
T Consensus 167 KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~-~~d~d~f~----------------~i~~ki~ 214 (906)
T PRK14720 167 KAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYN-SDDFDFFL----------------RIERKVL 214 (906)
T ss_pred HHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcC-cccchHHH----------------HHHHHHH
Confidence 777766666543 445556667777777776543 21222222 2222222
Q ss_pred hC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccccchhHHHHHHHhcccCCC
Q 047932 454 RV-GLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFIRNNETSKSSRGKLMSQMSSCWSMCF 532 (598)
Q Consensus 454 ~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 532 (598)
.. |..--..++..+-..|-..++|++++.+++.+++.. +-|.....-++.+|. +.+.. .. .+++.++.. ++
T Consensus 215 ~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~-~~n~~a~~~l~~~y~--~kY~~-~~--~~ee~l~~s--~l 286 (906)
T PRK14720 215 GHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHD-NKNNKAREELIRFYK--EKYKD-HS--LLEDYLKMS--DI 286 (906)
T ss_pred hhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC-CcchhhHHHHHHHHH--HHccC-cc--hHHHHHHHh--cc
Confidence 21 112223445555566667777777777777777754 445566666666665 33333 34 445444431 22
Q ss_pred CCChHHHHHHHHHhCCCCCChhhHHHhhhcCccccc
Q 047932 533 QPKTLICSISIMLQKDMSPGDTMFSTALLMDPDCSC 568 (598)
Q Consensus 533 ~p~~~~~~~~~~~~~~~~~a~~~~~~~l~~~P~~~~ 568 (598)
.-. ..++..++..|++.+..+|.|-+
T Consensus 287 ~~~----------~~~~~~~i~~fek~i~f~~G~yv 312 (906)
T PRK14720 287 GNN----------RKPVKDCIADFEKNIVFDTGNFV 312 (906)
T ss_pred ccC----------CccHHHHHHHHHHHeeecCCCEE
Confidence 211 12233444555565555555544
No 116
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.74 E-value=2.8e-06 Score=83.43 Aligned_cols=221 Identities=15% Similarity=0.081 Sum_probs=181.3
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHH
Q 047932 283 HPNTFVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTL 362 (598)
Q Consensus 283 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 362 (598)
+|--..-..+...+...|-...|..+++++. .|.-++.+|...|+..+|..+..+-.++ +|+...|..+
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~L 463 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLL 463 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHh
Confidence 3334445567788889999999999998765 3667888999999999999999988884 6789999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCH
Q 047932 363 FLGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKL 442 (598)
Q Consensus 363 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 442 (598)
+.......-+++|.++.+..... .-..+.....+.++++++.+.|+.-.... +....+|-.+..+..+.+++
T Consensus 464 GDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~ 535 (777)
T KOG1128|consen 464 GDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKE 535 (777)
T ss_pred hhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhh
Confidence 88888777889999988765432 11222333445799999999999887665 45677899999999999999
Q ss_pred HHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccccchhHHH
Q 047932 443 ETAWELFQSLSRVGLLPN-VVTYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFIRNNETSKSSRGKLM 521 (598)
Q Consensus 443 ~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 521 (598)
..|.+.|...... .|+ ...||.+-.+|.+.|+-.+|...++++.+.+ .-+...|...+....+.|.+++|.+ .+
T Consensus 536 q~av~aF~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~--A~ 610 (777)
T KOG1128|consen 536 QAAVKAFHRCVTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIK--AY 610 (777)
T ss_pred HHHHHHHHHHhhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHH--HH
Confidence 9999999998874 555 6789999999999999999999999999987 5566778888888899999999999 99
Q ss_pred HHHHhc
Q 047932 522 SQMSSC 527 (598)
Q Consensus 522 ~~~~~~ 527 (598)
.++...
T Consensus 611 ~rll~~ 616 (777)
T KOG1128|consen 611 HRLLDL 616 (777)
T ss_pred HHHHHh
Confidence 998766
No 117
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.70 E-value=1.7e-05 Score=68.50 Aligned_cols=119 Identities=16% Similarity=0.128 Sum_probs=61.2
Q ss_pred HHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 047932 401 LCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCK----IGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQ 476 (598)
Q Consensus 401 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 476 (598)
+.+..+++-|...+++|.+.. +-.+.+.|..++.+ .+++.+|.-+|++|.+. ..|+..+.+..+.++...|+
T Consensus 147 ~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~ 222 (299)
T KOG3081|consen 147 LLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGR 222 (299)
T ss_pred HHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcC
Confidence 444445555555555555321 33444444444433 23455566666666553 34555566666666666666
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccccchhHHHHHHH
Q 047932 477 MDKAHDLFLDMEAKGVEPDCVIFNTIMLGFIRNNETSKSSRGKLMSQMS 525 (598)
Q Consensus 477 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 525 (598)
+++|..+++.++.+. ..++.+...++.+-...|...++.. +.+.+..
T Consensus 223 ~eeAe~lL~eaL~kd-~~dpetL~Nliv~a~~~Gkd~~~~~-r~l~QLk 269 (299)
T KOG3081|consen 223 YEEAESLLEEALDKD-AKDPETLANLIVLALHLGKDAEVTE-RNLSQLK 269 (299)
T ss_pred HHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhCCChHHHH-HHHHHHH
Confidence 666666666666543 3445555555555555555544333 2444444
No 118
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.69 E-value=1.4e-06 Score=75.52 Aligned_cols=119 Identities=14% Similarity=0.188 Sum_probs=77.7
Q ss_pred CCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhccHHHHHHHHHHH
Q 047932 52 LITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCRIMEAAALFTKL 131 (598)
Q Consensus 52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~a~~~~~~~ 131 (598)
.++.+++...++..++.+|. +...|..++..|...|++++|...|+++.+.. |
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~--~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~--P----------------------- 104 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQ--NSEQWALLGEYYLWRNDYDNALLAYRQALQLR--G----------------------- 104 (198)
T ss_pred chhHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--C-----------------------
Confidence 55667777777777777765 77777777777777777777777777766542 2
Q ss_pred HHcCCCCCHhhHHHHHHH-HHhcCC--hhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 047932 132 RVFGCEPDVFTYNTLING-LCRTGH--TIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMK 208 (598)
Q Consensus 132 ~~~~~~~~~~~~~~l~~~-~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 208 (598)
.+...+..+..+ +.+.|+ .++|.+++++..+.+ +.+..++..+...+.+.|++++|+..|+.+.
T Consensus 105 ------~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d-------P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL 171 (198)
T PRK10370 105 ------ENAELYAALATVLYYQAGQHMTPQTREMIDKALALD-------ANEVTALMLLASDAFMQADYAQAIELWQKVL 171 (198)
T ss_pred ------CCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC-------CCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 244555555554 345555 366777777766665 4456666666666667777777777777666
Q ss_pred hC
Q 047932 209 DE 210 (598)
Q Consensus 209 ~~ 210 (598)
+.
T Consensus 172 ~l 173 (198)
T PRK10370 172 DL 173 (198)
T ss_pred hh
Confidence 54
No 119
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.66 E-value=9.6e-06 Score=83.66 Aligned_cols=186 Identities=16% Similarity=0.110 Sum_probs=113.6
Q ss_pred CCCCChhhHHHHHHHhhhhh---hcchhHHHHHHHhhccCCcccccCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 047932 9 NEPSDPTTTAKLKESLRLTV---KDGASIEKFLKERSKSSGQGDINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCL 85 (598)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 85 (598)
-+.+.|++-+....++...- ..+..++..++......+.+.. ..+++.-.....+..|. ++.++..|+.+.
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~--~~~~~~~La~i~ 96 (694)
T PRK15179 23 GPASGPTILDLLEAALAEPGESEEAGRELLQQARQVLERHAAVHK----PAAALPELLDYVRRYPH--TELFQVLVARAL 96 (694)
T ss_pred CCCCCcHHHhHHHHHhcCcccchhHHHHHHHHHHHHHHHhhhhcc----hHhhHHHHHHHHHhccc--cHHHHHHHHHHH
Confidence 34566777666665555552 2223444445554443332222 23333333333445555 799999999999
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhc------cHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHH
Q 047932 86 AKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINC------RIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVA 159 (598)
Q Consensus 86 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 159 (598)
.+.|.+++|..+++.+.+. .|+.......... ++++|+..+++....++ .+......+..++.+.|++++|
T Consensus 97 ~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p-~~~~~~~~~a~~l~~~g~~~~A 173 (694)
T PRK15179 97 EAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGS-SSAREILLEAKSWDEIGQSEQA 173 (694)
T ss_pred HHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCC-CCHHHHHHHHHHHHHhcchHHH
Confidence 9999999999999999976 5665443322221 66666666666665532 2444555666666666777777
Q ss_pred HHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 047932 160 LNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDE 210 (598)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 210 (598)
..+|+++...+ +.+..++..+...+.+.|+.++|...|+...+.
T Consensus 174 ~~~y~~~~~~~-------p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 174 DACFERLSRQH-------PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHHHHHhcC-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 77777666643 344666666666666667777777766666654
No 120
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.65 E-value=6.4e-06 Score=74.73 Aligned_cols=185 Identities=12% Similarity=-0.022 Sum_probs=126.0
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCH---hHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC
Q 047932 139 DVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDT---VTYNTIIDGVCKEGFVDKAMELFLQMKDENINPN 215 (598)
Q Consensus 139 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 215 (598)
....+..++..+...|+++.|...|+++.... +.+. .++..+..++...|++++|...++.+.+......
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-------p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~ 104 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRY-------PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHP 104 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCC
Confidence 45567788888999999999999999988765 2222 4677788899999999999999999987532211
Q ss_pred H--HHHHHHHHHHHhc--------CCHHHHHHHHHHHHHCCCCCCH-hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCc
Q 047932 216 V--VTYNSLIHCFSHA--------DDWNEAKRLFIKMMDQGVHPNV-VTFSVIVDELCKNGKMEEASRLLDLMIQIGVHP 284 (598)
Q Consensus 216 ~--~~~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 284 (598)
. .++..+..++... |++++|.+.|+.+... .|+. ..+..+..... ... ..
T Consensus 105 ~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~~~------~~------- 165 (235)
T TIGR03302 105 DADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----LRN------RL------- 165 (235)
T ss_pred chHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----HHH------HH-------
Confidence 1 2455555666554 7788899999888876 2332 22222211100 000 00
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCChhhHHHHHHHHHhcCCHHHHHHHHHHHccC
Q 047932 285 NTFVYNTLMDGFCLTGRVNHAKELFVSMESNGC--MHDVVSYTTLINGYCKTKNVEEALNLYRKMLPK 350 (598)
Q Consensus 285 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 350 (598)
......+...+.+.|++++|...++....... +.....+..+..++...|++++|..+++.+...
T Consensus 166 -~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 166 -AGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred -HHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 01122455678888999999999998887631 223567888889999999999999988887654
No 121
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.65 E-value=8.1e-06 Score=70.87 Aligned_cols=125 Identities=10% Similarity=0.076 Sum_probs=83.4
Q ss_pred cCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH-HHcCC--HHHH
Q 047932 369 VHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGL-CKIGK--LETA 445 (598)
Q Consensus 369 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~A 445 (598)
.++.+++...++...+.+ +.+...|..+...|...|++++|...|+++.... +.+...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 455566666666666554 5567777777777777777777777777777654 33666676666653 55565 4777
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 047932 446 WELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPDCV 497 (598)
Q Consensus 446 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 497 (598)
.+++++..+.+.. +...+..+...+...|++++|+..|+++++.. +|+..
T Consensus 130 ~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~-~~~~~ 179 (198)
T PRK10370 130 REMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDLN-SPRVN 179 (198)
T ss_pred HHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcc
Confidence 7777777775322 45666677777777777777777777777654 45443
No 122
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.64 E-value=1e-05 Score=69.92 Aligned_cols=159 Identities=14% Similarity=0.135 Sum_probs=112.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHc
Q 047932 360 STLFLGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKI 439 (598)
Q Consensus 360 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 439 (598)
..+-..+...|+-+....+........ +.+.......+....+.|++..|...++++.... ++|..+|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 445555666677776666666654432 4456666667777788888888888888877654 66788888888888888
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccccchhH
Q 047932 440 GKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFIRNNETSKSSRGK 519 (598)
Q Consensus 440 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 519 (598)
|+++.|..-|.+..+.. .-+...++.+...+.-.|+.+.|..++......+ .-|...-..+..+....|++++|..
T Consensus 148 Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~-- 223 (257)
T COG5010 148 GRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAED-- 223 (257)
T ss_pred cChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHh--
Confidence 88888888888887742 2245667777777888888888888888877654 3366666677777778888888777
Q ss_pred HHHHH
Q 047932 520 LMSQM 524 (598)
Q Consensus 520 ~~~~~ 524 (598)
+..+-
T Consensus 224 i~~~e 228 (257)
T COG5010 224 IAVQE 228 (257)
T ss_pred hcccc
Confidence 55444
No 123
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.63 E-value=6.5e-05 Score=70.85 Aligned_cols=240 Identities=17% Similarity=0.136 Sum_probs=149.6
Q ss_pred HHHHHHHhcCC-hhHHHHHHHHHH---hCCCCCCHHhHHHHHhc-cHHHHHHHHHHHHHcC--CCCCHhhHHHHHHHHHh
Q 047932 80 ILFGCLAKNKH-YDTVLSLFKRLN---STGLFPDLYTHSILINC-RIMEAAALFTKLRVFG--CEPDVFTYNTLINGLCR 152 (598)
Q Consensus 80 ~l~~~~~~~g~-~~~A~~~~~~~~---~~~~~p~~~~~~~ll~~-~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~ 152 (598)
.-+..+.+.|. +....+.|+++. ..+-.|+.+..+.=+.. ++.++...-+.+...+ -.|+...+...+.....
T Consensus 207 ~Gi~~L~raGydp~gM~~ff~rl~~~~~~~~~~p~yl~THPlp~~RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~ 286 (484)
T COG4783 207 IGITTLVRAGYDPQGMPEFFERLADQLRYGGQPPEYLLTHPLPEERIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYE 286 (484)
T ss_pred HHHHHHHHcCCCchhHHHHHHHHHHHHhcCCCCChHHhcCCCchhHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhc
Confidence 34445556663 445567777776 33444444433222222 6666665655555432 12344444555544443
Q ss_pred cCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCH
Q 047932 153 TGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTYNSLIHCFSHADDW 232 (598)
Q Consensus 153 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 232 (598)
...-..+..++.+..+.. -...+.-....+...|++++|+..++.+... .+-|+..+......+.+.++.
T Consensus 287 ~~~~~~~~~~~~~~~~~~---------~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~ 356 (484)
T COG4783 287 ALPNQQAADLLAKRSKRG---------GLAAQYGRALQTYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKA 356 (484)
T ss_pred cccccchHHHHHHHhCcc---------chHHHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCh
Confidence 333333333333322211 1233333444556778888888888887775 344666667777888888888
Q ss_pred HHHHHHHHHHHHCCCCCC-HhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 047932 233 NEAKRLFIKMMDQGVHPN-VVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTLMDGFCLTGRVNHAKELFVS 311 (598)
Q Consensus 233 ~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 311 (598)
.+|.+.++++... .|+ ......+..++.+.|++.+|+++++...... +.|+..|..|..+|...|+..++.....
T Consensus 357 ~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~A- 432 (484)
T COG4783 357 KEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARA- 432 (484)
T ss_pred HHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHH-
Confidence 8888888888876 344 4556667788888888888888888887764 4578888888888888888777765443
Q ss_pred HHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccC
Q 047932 312 MESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPK 350 (598)
Q Consensus 312 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 350 (598)
..|...|++++|+..+....+.
T Consensus 433 -----------------E~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 433 -----------------EGYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred -----------------HHHHhCCCHHHHHHHHHHHHHh
Confidence 3456678888888888777665
No 124
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.62 E-value=1.4e-05 Score=69.06 Aligned_cols=156 Identities=13% Similarity=0.003 Sum_probs=76.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCC
Q 047932 327 LINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGF 406 (598)
Q Consensus 327 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 406 (598)
+-..+...|+-+.+..+........ ..|.......+....+.|++..|...+.++.... ++|...++.+.-+|.+.|+
T Consensus 72 ~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~Gr 149 (257)
T COG5010 72 LATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLGR 149 (257)
T ss_pred HHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHccC
Confidence 3344444454444444444433221 1133334445555555555555555555555443 4455555555555555555
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 047932 407 VLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLD 486 (598)
Q Consensus 407 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 486 (598)
++.|..-|.+..+.. .-+...++.+.-.+.-.|+++.|..++......+. -|...-..+.......|++++|..+...
T Consensus 150 ~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~-ad~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 150 FDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA-ADSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred hhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC-CchHHHHHHHHHHhhcCChHHHHhhccc
Confidence 555555555555442 22444455555555555555555555555544321 1333444444455555555555555443
No 125
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.58 E-value=8.4e-06 Score=73.98 Aligned_cols=188 Identities=9% Similarity=-0.015 Sum_probs=117.1
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCC-CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcC--HHHH
Q 047932 319 HDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIR-PT-VVTYSTLFLGLFEVHQVEHALKLFDEMQHNDVAAD--TYIY 394 (598)
Q Consensus 319 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~ 394 (598)
.....+..++..+...|++++|...|+++....+. |. ...+..+..++...|++++|...++++.+...... ...+
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 35566677777788888888888888887765322 11 13556677778888888888888888876532111 1234
Q ss_pred HHHHHHHHHc--------CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 047932 395 NTFIDGLCKN--------GFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNI 466 (598)
Q Consensus 395 ~~l~~~~~~~--------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 466 (598)
..+..++... |++++|...|+.+.... +-+...+..+..... .. .... .....
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~~~~----~~------~~~~--------~~~~~ 171 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-PNSEYAPDAKKRMDY----LR------NRLA--------GKELY 171 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC-CCChhHHHHHHHHHH----HH------HHHH--------HHHHH
Confidence 4445555544 66777777777777553 212222222111100 00 0000 01124
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCccccchhHHHHHHHhc
Q 047932 467 MIHGLCNDGQMDKAHDLFLDMEAKG--VEPDCVIFNTIMLGFIRNNETSKSSRGKLMSQMSSC 527 (598)
Q Consensus 467 l~~~~~~~g~~~~A~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 527 (598)
+...+.+.|++.+|+..+++++... -+.....+..++.++...|++++|.. +++.+...
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~--~~~~l~~~ 232 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQD--AAAVLGAN 232 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHH--HHHHHHhh
Confidence 5566788899999999998888752 12235677888888899999999988 88888754
No 126
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.58 E-value=2.9e-05 Score=67.08 Aligned_cols=252 Identities=12% Similarity=0.087 Sum_probs=157.8
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 047932 296 FCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFEVHQVEHA 375 (598)
Q Consensus 296 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 375 (598)
+.-.|.+..++..-....... .+...-..+.++|...|.+..... .+.... .|....+..+.......++.+.-
T Consensus 18 ~fY~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~~~---eI~~~~-~~~lqAvr~~a~~~~~e~~~~~~ 91 (299)
T KOG3081|consen 18 YFYLGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIVIS---EIKEGK-ATPLQAVRLLAEYLELESNKKSI 91 (299)
T ss_pred HHHhhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHccccccccc---cccccc-CChHHHHHHHHHHhhCcchhHHH
Confidence 334566665555444433321 233333444556666665543332 222221 33444444444444444444433
Q ss_pred H-HHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 047932 376 L-KLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSR 454 (598)
Q Consensus 376 ~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 454 (598)
. .+.+.+.......+......-...|++.|++++|++...... +......=+..+.+..+++-|.+.+++|.+
T Consensus 92 ~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ 165 (299)
T KOG3081|consen 92 LASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQ 165 (299)
T ss_pred HHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3 334444444334443444445567889999999999887632 333444445667788899999999999998
Q ss_pred CCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccccchhHHHHHHHhcccC
Q 047932 455 VGLLPNVVTYNIMIHGLCN----DGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFIRNNETSKSSRGKLMSQMSSCWSM 530 (598)
Q Consensus 455 ~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 530 (598)
. .+..+.+.|..++.+ .+.+..|.-+|++|-++ .+|+..+.+....++...|++++|.. +++.+..+
T Consensus 166 i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~--lL~eaL~k--- 236 (299)
T KOG3081|consen 166 I---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAES--LLEEALDK--- 236 (299)
T ss_pred c---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHH--HHHHHHhc---
Confidence 4 366777778777763 45789999999999875 58999999999999999999999999 99999976
Q ss_pred CCCCChHHHHH--HH--HHhCCCCCChhhHHHhhhcCccccch
Q 047932 531 CFQPKTLICSI--SI--MLQKDMSPGDTMFSTALLMDPDCSCD 569 (598)
Q Consensus 531 ~~~p~~~~~~~--~~--~~~~~~~~a~~~~~~~l~~~P~~~~~ 569 (598)
...++.+... .+ ....+.+--.+...++....|+++-+
T Consensus 237 -d~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~v 278 (299)
T KOG3081|consen 237 -DAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPFV 278 (299)
T ss_pred -cCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchHH
Confidence 2233333333 22 22333344467777777778887754
No 127
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.57 E-value=8.4e-06 Score=66.82 Aligned_cols=108 Identities=10% Similarity=-0.093 Sum_probs=73.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 047932 394 YNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCN 473 (598)
Q Consensus 394 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 473 (598)
+......+...|++++|...|+.+.... +.+...|..+..++...|++++|+..|++....+ +.+...+..+..++..
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHH
Confidence 4445666777777777777777777654 4466777777777777778888888777777653 2356667777777777
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 047932 474 DGQMDKAHDLFLDMEAKGVEPDCVIFNTIML 504 (598)
Q Consensus 474 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 504 (598)
.|++++|+..|+..++.. +.+...+.....
T Consensus 105 ~g~~~eAi~~~~~Al~~~-p~~~~~~~~~~~ 134 (144)
T PRK15359 105 MGEPGLAREAFQTAIKMS-YADASWSEIRQN 134 (144)
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 788888888887777653 334444444433
No 128
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.55 E-value=6e-05 Score=78.70 Aligned_cols=239 Identities=11% Similarity=0.053 Sum_probs=149.1
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHH
Q 047932 139 DVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVT 218 (598)
Q Consensus 139 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 218 (598)
....+..|+..|...|++++|.++.+...+.. |.....|..+...+.+.++..++.-+
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-------P~~i~~yy~~G~l~~q~~~~~~~~lv--------------- 87 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEH-------KKSISALYISGILSLSRRPLNDSNLL--------------- 87 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-------CcceehHHHHHHHHHhhcchhhhhhh---------------
Confidence 45678899999999999999999999887764 33455555555577777775554444
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHh
Q 047932 219 YNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTLMDGFCL 298 (598)
Q Consensus 219 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 298 (598)
.++.......++.-...++..+... .-+...+..++.+|.+.|+.+++..+|+++++.. +-|..+.|.+...|..
T Consensus 88 --~~l~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae 162 (906)
T PRK14720 88 --NLIDSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEE 162 (906)
T ss_pred --hhhhhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHH
Confidence 2344444455554445555555553 3344567778888889999999999999998887 4478888888888888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 047932 299 TGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFEVHQVEHALKL 378 (598)
Q Consensus 299 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 378 (598)
. +.++|.+++.+.... +...+++.++.++|.++....+. +...+..+.+.....-
T Consensus 163 ~-dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~-d~d~f~~i~~ki~~~~-------- 217 (906)
T PRK14720 163 E-DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSD-DFDFFLRIERKVLGHR-------- 217 (906)
T ss_pred h-hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcc-cchHHHHHHHHHHhhh--------
Confidence 8 888888888877653 55566777777777777765322 2222221111111110
Q ss_pred HHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 047932 379 FDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLC 437 (598)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 437 (598)
+..--..++.-+...|-..++++++..+++.+++.. +.|......++.+|.
T Consensus 218 -------~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~-~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 218 -------EFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHD-NKNNKAREELIRFYK 268 (906)
T ss_pred -------ccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC-CcchhhHHHHHHHHH
Confidence 111112233334444555556666666666666544 224444555555544
No 129
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.52 E-value=1.1e-05 Score=66.10 Aligned_cols=95 Identities=7% Similarity=-0.090 Sum_probs=71.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 047932 143 YNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTYNSL 222 (598)
Q Consensus 143 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 222 (598)
+..+...+...|++++|...|+.....+ +.+...|..+..++.+.|++++|...|+.....+. .+...+..+
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-------P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p-~~~~a~~~l 98 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-------PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA-SHPEPVYQT 98 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-------CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHH
Confidence 4456677777888888888888877765 55677777777888888888888888888777543 366777777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC
Q 047932 223 IHCFSHADDWNEAKRLFIKMMDQ 245 (598)
Q Consensus 223 ~~~~~~~~~~~~a~~~~~~~~~~ 245 (598)
..++...|++++|...|+..++.
T Consensus 99 g~~l~~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 99 GVCLKMMGEPGLAREAFQTAIKM 121 (144)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Confidence 77777888888888888877765
No 130
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.49 E-value=5.6e-05 Score=64.83 Aligned_cols=188 Identities=13% Similarity=0.127 Sum_probs=131.8
Q ss_pred cCCHHHHHHHHHHHccC---C-CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHH
Q 047932 334 TKNVEEALNLYRKMLPK---G-IRPTV-VTYSTLFLGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVL 408 (598)
Q Consensus 334 ~~~~~~A~~~~~~~~~~---~-~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 408 (598)
..+.++..+++.++... | ..++. ..|..++-+....|+.+.|..+++.+.+.- +.+..+...-.-.+-..|+++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchh
Confidence 34566677766666432 2 33343 334555566677888888888888887763 444444443344456678888
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047932 409 EALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDME 488 (598)
Q Consensus 409 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 488 (598)
+|+++++.+++.+ +.|..++-.=+...-..|+.-+|++-+....+. +.-|...|.-+...|...|++++|.-.+++++
T Consensus 104 ~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 104 EAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred hHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 8888888888765 456666766666677778888888888887775 56688888888888998899999998888888
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCC---ccccchhHHHHHHHhc
Q 047932 489 AKGVEPDCVIFNTIMLGFIRNNE---TSKSSRGKLMSQMSSC 527 (598)
Q Consensus 489 ~~~~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~ 527 (598)
-.. |-++..+..+...+.-.|. .+-|.+ ++.+..+.
T Consensus 182 l~~-P~n~l~f~rlae~~Yt~gg~eN~~~ark--yy~~alkl 220 (289)
T KOG3060|consen 182 LIQ-PFNPLYFQRLAEVLYTQGGAENLELARK--YYERALKL 220 (289)
T ss_pred HcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHH--HHHHHHHh
Confidence 654 5577777778777665443 455666 88888754
No 131
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.48 E-value=8.1e-05 Score=76.98 Aligned_cols=181 Identities=9% Similarity=0.078 Sum_probs=135.2
Q ss_pred CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHH
Q 047932 282 VHPNTFVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYST 361 (598)
Q Consensus 282 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 361 (598)
...+...+..|.....+.|.+++|..+++.+.+.. |.+......++..+.+.+++++|+..+++.....+. +......
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHH
Confidence 34468888889999999999999999999998874 446667778888899999999999999999887543 5667778
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCC
Q 047932 362 LFLGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGK 441 (598)
Q Consensus 362 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 441 (598)
+..++.+.|++++|..+|+++...+ +.+...+..+..++...|+.++|...|+.+.+.. .+....|+.++. +
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~~------~ 231 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRLV------D 231 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHHH------H
Confidence 8888899999999999999998843 4557888889999999999999999999988653 345555554442 3
Q ss_pred HHHHHHHHHHHHhC----CCCCCHHHHHHHHHHHH
Q 047932 442 LETAWELFQSLSRV----GLLPNVVTYNIMIHGLC 472 (598)
Q Consensus 442 ~~~A~~~~~~~~~~----~~~p~~~~~~~l~~~~~ 472 (598)
...-..+++++.-. |.+....++...+..+.
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (694)
T PRK15179 232 LNADLAALRRLGVEGDGRDVPVSILVLEKMLQEIG 266 (694)
T ss_pred HHHHHHHHHHcCcccccCCCceeeeeHHHHHHHHh
Confidence 44445556655332 22333445555555554
No 132
>PF12854 PPR_1: PPR repeat
Probab=98.47 E-value=2.4e-07 Score=53.66 Aligned_cols=33 Identities=61% Similarity=1.147 Sum_probs=31.4
Q ss_pred CCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 047932 135 GCEPDVFTYNTLINGLCRTGHTIVALNLFEEMA 167 (598)
Q Consensus 135 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 167 (598)
|+.||..+|+.||.+||+.|++++|.++|++|.
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 788999999999999999999999999999983
No 133
>PF12854 PPR_1: PPR repeat
Probab=98.46 E-value=3.2e-07 Score=53.14 Aligned_cols=32 Identities=50% Similarity=0.966 Sum_probs=21.6
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047932 456 GLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDM 487 (598)
Q Consensus 456 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 487 (598)
|+.||..+|+.|+.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 55666666666666666666666666666665
No 134
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.43 E-value=6.9e-05 Score=70.68 Aligned_cols=113 Identities=14% Similarity=0.055 Sum_probs=56.9
Q ss_pred HHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHH
Q 047932 401 LCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPN-VVTYNIMIHGLCNDGQMDK 479 (598)
Q Consensus 401 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~ 479 (598)
+...|.+++|+..++.++... +.|+..+......+...++..+|.+.++++... .|+ ......+..++.+.|++++
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHH
Confidence 334455555555555554332 334444455555555555555555555555543 233 3334444555555555555
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccccch
Q 047932 480 AHDLFLDMEAKGVEPDCVIFNTIMLGFIRNNETSKSSR 517 (598)
Q Consensus 480 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 517 (598)
|+.+++...... +.|+..|..|..+|...|+..++..
T Consensus 393 ai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~ 429 (484)
T COG4783 393 AIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALL 429 (484)
T ss_pred HHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHH
Confidence 555555554432 4455555555555555555544444
No 135
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.39 E-value=0.00037 Score=59.96 Aligned_cols=83 Identities=18% Similarity=0.118 Sum_probs=31.4
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 047932 299 TGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFEVHQVEHALKL 378 (598)
Q Consensus 299 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 378 (598)
.|.+++|.++++.+.+.+ |.|..++..-+...-..|+.-+|++-+....+. +..|...|.-+...|...|++++|.-.
T Consensus 99 ~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fC 176 (289)
T KOG3060|consen 99 TGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFC 176 (289)
T ss_pred hhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHH
Confidence 344444444444444332 223333333333333333333333333333332 112344444444444444444444444
Q ss_pred HHHHh
Q 047932 379 FDEMQ 383 (598)
Q Consensus 379 ~~~~~ 383 (598)
+++++
T Consensus 177 lEE~l 181 (289)
T KOG3060|consen 177 LEELL 181 (289)
T ss_pred HHHHH
Confidence 44433
No 136
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.38 E-value=1.7e-05 Score=64.72 Aligned_cols=110 Identities=15% Similarity=0.095 Sum_probs=61.7
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhccHHHHHHHHHHHHHcCCCCCH
Q 047932 61 IFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCRIMEAAALFTKLRVFGCEPDV 140 (598)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~a~~~~~~~~~~~~~~~~ 140 (598)
.|+.++..+|. +......++..+.+.|++++|...|+++...+ +.+.
T Consensus 5 ~~~~~l~~~p~--~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------------------------------p~~~ 51 (135)
T TIGR02552 5 TLKDLLGLDSE--QLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-------------------------------PYNS 51 (135)
T ss_pred hHHHHHcCChh--hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-------------------------------CCcH
Confidence 34555555554 44555556666666666666666666555431 1234
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 047932 141 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDE 210 (598)
Q Consensus 141 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 210 (598)
..+..+...+.+.|++++|...++.....+ +.+...+..+...+...|++++|...|+...+.
T Consensus 52 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 52 RYWLGLAACCQMLKEYEEAIDAYALAAALD-------PDDPRPYFHAAECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 455555566666666666666666655543 344555555555666666666666666655553
No 137
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.32 E-value=3.5e-05 Score=62.89 Aligned_cols=98 Identities=12% Similarity=0.090 Sum_probs=65.1
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHH
Q 047932 140 VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTY 219 (598)
Q Consensus 140 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 219 (598)
......++..+...|++++|.+.|+.+...+ +.+...+..+...+.+.|++++|...++.....+ +.+...+
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~ 88 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYD-------PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPY 88 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHH
Confidence 3445556666677777777777777776654 4456666777777777777777777777766553 3355666
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047932 220 NSLIHCFSHADDWNEAKRLFIKMMDQ 245 (598)
Q Consensus 220 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 245 (598)
..+..++...|++++|...|+...+.
T Consensus 89 ~~la~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 89 FHAAECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 66666777777777777777766664
No 138
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=98.21 E-value=0.0074 Score=59.11 Aligned_cols=176 Identities=13% Similarity=0.039 Sum_probs=90.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 047932 390 DTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIH 469 (598)
Q Consensus 390 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 469 (598)
+..+|...+......|+.+.+.-+|++..-. +..-...|-..+......|+.+-|..++....+.-.+....+-..-..
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence 3455666666666677777777666665521 122233455555555555777777666666555322212211111112
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCccccc---hhHHHHHHHhcccCCCCCChHHHHH----
Q 047932 470 GLCNDGQMDKAHDLFLDMEAKGVEPDC-VIFNTIMLGFIRNNETSKSS---RGKLMSQMSSCWSMCFQPKTLICSI---- 541 (598)
Q Consensus 470 ~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~---~~~~~~~~~~~~~~~~~p~~~~~~~---- 541 (598)
.+-..|++..|..+++...+.- |+. ..-..-+....+.|+.+.+. . ++...... ...+.......
T Consensus 375 f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~--l~s~~~~~---~~~~~i~~~l~~~~~ 447 (577)
T KOG1258|consen 375 FEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNE--LYSSIYEG---KENNGILEKLYVKFA 447 (577)
T ss_pred HHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHH--HHHHhccc---ccCcchhHHHHHHHH
Confidence 2234567777777777776542 332 22233344455666666655 3 44443322 22222211111
Q ss_pred --HHHHhCCCCCChhhHHHhhhcCccccchhhHh
Q 047932 542 --SIMLQKDMSPGDTMFSTALLMDPDCSCDLESL 573 (598)
Q Consensus 542 --~~~~~~~~~~a~~~~~~~l~~~P~~~~~~~~l 573 (598)
.....++.+.|..++..+++..|++...+..+
T Consensus 448 r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~ 481 (577)
T KOG1258|consen 448 RLRYKIREDADLARIILLEANDILPDCKVLYLEL 481 (577)
T ss_pred HHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHH
Confidence 12234666777777777777777777666555
No 139
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.19 E-value=0.0083 Score=59.42 Aligned_cols=42 Identities=17% Similarity=0.170 Sum_probs=30.1
Q ss_pred hHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047932 55 PNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNS 103 (598)
Q Consensus 55 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 103 (598)
+++|.++.+ .+ |.+..|..++..-.+.-.++.|...|-+...
T Consensus 679 ledA~qfiE----dn---PHprLWrllAe~Al~Kl~l~tAE~AFVrc~d 720 (1189)
T KOG2041|consen 679 LEDAIQFIE----DN---PHPRLWRLLAEYALFKLALDTAEHAFVRCGD 720 (1189)
T ss_pred hHHHHHHHh----cC---CchHHHHHHHHHHHHHHhhhhHhhhhhhhcc
Confidence 366665543 23 5789999999887777778888888776643
No 140
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.16 E-value=0.013 Score=60.04 Aligned_cols=60 Identities=17% Similarity=0.258 Sum_probs=49.8
Q ss_pred cccccCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH
Q 047932 47 QGDINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDL 110 (598)
Q Consensus 47 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 110 (598)
..+.+.|+.++|..+++......+. |..+...+...|...|+.++|..+|++..+. .|+.
T Consensus 51 Lsl~r~gk~~ea~~~Le~~~~~~~~--D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~e 110 (932)
T KOG2053|consen 51 LSLFRLGKGDEALKLLEALYGLKGT--DDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSE 110 (932)
T ss_pred HHHHHhcCchhHHHHHhhhccCCCC--chHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcH
Confidence 3467899999999888877665554 8888999999999999999999999999876 4543
No 141
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.11 E-value=8.9e-05 Score=70.75 Aligned_cols=122 Identities=11% Similarity=0.046 Sum_probs=68.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 047932 396 TFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDG 475 (598)
Q Consensus 396 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 475 (598)
.++..+...++++.|+.+|+++.+.. |+ ....++..+...++..+|.+++++..... +-+...+..-...+...+
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence 34444455556666666666665442 22 23345555555566666666666665431 224444444555566666
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccccchhHHHHHHH
Q 047932 476 QMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFIRNNETSKSSRGKLMSQMS 525 (598)
Q Consensus 476 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 525 (598)
+++.|+++.+++.... |-+..+|..|..+|...|+++.|+- .++.+.
T Consensus 249 ~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALl--aLNs~P 295 (395)
T PF09295_consen 249 KYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALL--ALNSCP 295 (395)
T ss_pred CHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHH--HHhcCc
Confidence 6666666666666542 3344566666666666666666666 666553
No 142
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.11 E-value=0.00019 Score=59.18 Aligned_cols=115 Identities=14% Similarity=0.173 Sum_probs=58.2
Q ss_pred cCChhHHHHHHHHHHhcCCCCccccCCC---HhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH--HHHHHHHHHHH
Q 047932 153 TGHTIVALNLFEEMANGNGEFGVVCKPD---TVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNV--VTYNSLIHCFS 227 (598)
Q Consensus 153 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~ 227 (598)
.++...+...++.+...+ +.+ ......+...+...|++++|...|+.+......++. .....|..++.
T Consensus 24 ~~~~~~~~~~~~~l~~~~-------~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~ 96 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDY-------PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILL 96 (145)
T ss_pred CCCHHHHHHHHHHHHHHC-------CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHH
Confidence 556666666666666544 122 223333445556666666666666666654322211 12333455555
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHH
Q 047932 228 HADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDL 276 (598)
Q Consensus 228 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 276 (598)
..|++++|+..++..... ......+.....++.+.|++++|...|+.
T Consensus 97 ~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 97 QQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 666666666666443221 12233444455556666666666665554
No 143
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.10 E-value=0.0003 Score=57.95 Aligned_cols=86 Identities=16% Similarity=0.201 Sum_probs=35.2
Q ss_pred HHHHhCCCHHHHHHHHHHHHhcCCCcCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC
Q 047932 259 DELCKNGKMEEASRLLDLMIQIGVHPNT--FVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKN 336 (598)
Q Consensus 259 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 336 (598)
..+...|++++|...|+.+......+.. .....+...+...|++++|+..++..... ......+.....+|...|+
T Consensus 56 ~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~ 133 (145)
T PF09976_consen 56 KAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGD 133 (145)
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCC
Confidence 3444445555555555444443311111 12222334444444454444444332221 1222333344444445555
Q ss_pred HHHHHHHHHH
Q 047932 337 VEEALNLYRK 346 (598)
Q Consensus 337 ~~~A~~~~~~ 346 (598)
+++|...|+.
T Consensus 134 ~~~A~~~y~~ 143 (145)
T PF09976_consen 134 YDEARAAYQK 143 (145)
T ss_pred HHHHHHHHHH
Confidence 5555544443
No 144
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.08 E-value=0.00044 Score=66.12 Aligned_cols=120 Identities=15% Similarity=0.186 Sum_probs=54.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCC
Q 047932 187 IIDGVCKEGFVDKAMELFLQMKDENINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGK 266 (598)
Q Consensus 187 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 266 (598)
|+..+...++++.|.++|+++.+.. |+ ....+++.+...++-.+|.+++.+.++. .+.+...+......+.+.++
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCC
Confidence 3344444455555555555555431 22 2233444444455555555555555443 12233344444444445555
Q ss_pred HHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047932 267 MEEASRLLDLMIQIGVHPNTFVYNTLMDGFCLTGRVNHAKELFVSM 312 (598)
Q Consensus 267 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 312 (598)
++.|+++.+++.+.. +.+-.+|..|..+|...|+++.|+..++.+
T Consensus 250 ~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 250 YELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 555555555554431 112234444445555555555554444433
No 145
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.98 E-value=1.7e-05 Score=55.48 Aligned_cols=64 Identities=23% Similarity=0.302 Sum_probs=54.8
Q ss_pred ccCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHH
Q 047932 50 INLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI 117 (598)
Q Consensus 50 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll 117 (598)
++.|++++|+..|+.++..+|. +..++..++.+|.+.|++++|..+++++... .|+...+..++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l~ 65 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPD--NPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQLL 65 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTT--SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHHH
Confidence 4689999999999999999997 9999999999999999999999999999976 56655554443
No 146
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.89 E-value=2.1e-05 Score=46.29 Aligned_cols=33 Identities=55% Similarity=1.026 Sum_probs=19.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC
Q 047932 183 TYNTIIDGVCKEGFVDKAMELFLQMKDENINPN 215 (598)
Q Consensus 183 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 215 (598)
+|++++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 456666666666666666666666666555554
No 147
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.87 E-value=3e-05 Score=45.63 Aligned_cols=33 Identities=48% Similarity=1.024 Sum_probs=24.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 047932 463 TYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPD 495 (598)
Q Consensus 463 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 495 (598)
+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 567777777777777777777777777777665
No 148
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.86 E-value=0.00072 Score=53.56 Aligned_cols=98 Identities=15% Similarity=0.024 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhCCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHH
Q 047932 393 IYNTFIDGLCKNGFVLEALELFCAIGNSKYE--LDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLL--PNVVTYNIMI 468 (598)
Q Consensus 393 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--p~~~~~~~l~ 468 (598)
++..++..+.+.|++++|...|..+...... .....+..+..++...|++++|...++.+...... .....+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 3444555666667777777777666643211 11334555666677777777777777776653211 1134455666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC
Q 047932 469 HGLCNDGQMDKAHDLFLDMEAK 490 (598)
Q Consensus 469 ~~~~~~g~~~~A~~~~~~~~~~ 490 (598)
.++.+.|++++|...++++.+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHH
Confidence 6666777777777777777665
No 149
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.86 E-value=0.00023 Score=60.69 Aligned_cols=117 Identities=14% Similarity=0.115 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 047932 426 IISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPN--VVTYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIM 503 (598)
Q Consensus 426 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 503 (598)
...+..+...+...|++++|...|++..+.+..+. ...+..+..++.+.|++++|+..++++++.. +.+...+..+.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 113 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHH
Confidence 44566777777778888888888888776432222 3567777788888888888888888888753 33566667777
Q ss_pred HHHHhcCCccccchhHHHHHHHhcccCCCCCChHHHHHHHHHhCCCCCChhhHHHhhhcCccc
Q 047932 504 LGFIRNNETSKSSRGKLMSQMSSCWSMCFQPKTLICSISIMLQKDMSPGDTMFSTALLMDPDC 566 (598)
Q Consensus 504 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~l~~~P~~ 566 (598)
.++...|+...+.. -++.+.. .+++|.+.++++++++|++
T Consensus 114 ~~~~~~g~~~~a~~--~~~~A~~---------------------~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 114 VIYHKRGEKAEEAG--DQDEAEA---------------------LFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHcCChHhHhh--CHHHHHH---------------------HHHHHHHHHHHHHhhCchh
Confidence 77777777666555 4444321 2344667788888888887
No 150
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.85 E-value=0.021 Score=53.22 Aligned_cols=91 Identities=15% Similarity=0.031 Sum_probs=56.6
Q ss_pred HHHHhcCCHHHHHHHHHHHccC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcC
Q 047932 329 NGYCKTKNVEEALNLYRKMLPK---GIRPTVVTYSTLFLGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNG 405 (598)
Q Consensus 329 ~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 405 (598)
+-..+.|++..|.+.|.+.+.. +..++...|........+.|+..+|+.--+.....+ +.-...+..-..++...+
T Consensus 257 N~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD-~syikall~ra~c~l~le 335 (486)
T KOG0550|consen 257 NDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID-SSYIKALLRRANCHLALE 335 (486)
T ss_pred hhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC-HHHHHHHHHHHHHHHHHH
Confidence 3455677888888888877654 344455666666666677788877777776666542 111222333334555667
Q ss_pred CHHHHHHHHHHHhhC
Q 047932 406 FVLEALELFCAIGNS 420 (598)
Q Consensus 406 ~~~~A~~~~~~~~~~ 420 (598)
+|++|.+-|++..+.
T Consensus 336 ~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 336 KWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHhh
Confidence 777777777777654
No 151
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.84 E-value=0.00035 Score=52.61 Aligned_cols=94 Identities=18% Similarity=0.209 Sum_probs=55.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 047932 143 YNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTYNSL 222 (598)
Q Consensus 143 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 222 (598)
+..++..+...|++++|...++.+.+.. +.+...+..+...+...|++++|.+.++....... .+..++..+
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ 74 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-------PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDP-DNAKAYYNL 74 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-------CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-cchhHHHHH
Confidence 4445556666677777777776666543 33345556666666666666666666666655432 233455556
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 047932 223 IHCFSHADDWNEAKRLFIKMMD 244 (598)
Q Consensus 223 ~~~~~~~~~~~~a~~~~~~~~~ 244 (598)
...+...|+++.|...+....+
T Consensus 75 ~~~~~~~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 75 GLAYYKLGKYEEALEAYEKALE 96 (100)
T ss_pred HHHHHHHHhHHHHHHHHHHHHc
Confidence 6666666666666666665544
No 152
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.84 E-value=0.0018 Score=52.38 Aligned_cols=95 Identities=7% Similarity=-0.112 Sum_probs=60.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 047932 394 YNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCN 473 (598)
Q Consensus 394 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 473 (598)
.-.+...+...|++++|..+|+.+.... +-+..-|..|.-++-..|++++|+..|......++ .|...+..+..++..
T Consensus 38 lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~ 115 (157)
T PRK15363 38 LYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHH
Confidence 3344445566677777777777666554 22455566666677777777777777777666532 245566666677777
Q ss_pred cCCHHHHHHHHHHHHHC
Q 047932 474 DGQMDKAHDLFLDMEAK 490 (598)
Q Consensus 474 ~g~~~~A~~~~~~~~~~ 490 (598)
.|+.+.|.+.|+..+..
T Consensus 116 lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 116 CDNVCYAIKALKAVVRI 132 (157)
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 77777777777766653
No 153
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.82 E-value=4.3e-05 Score=44.57 Aligned_cols=32 Identities=38% Similarity=0.686 Sum_probs=19.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 047932 463 TYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEP 494 (598)
Q Consensus 463 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 494 (598)
+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 56666666666666666666666666666554
No 154
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.81 E-value=0.017 Score=53.83 Aligned_cols=275 Identities=13% Similarity=0.051 Sum_probs=142.8
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHH
Q 047932 148 NGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPN-VVTYNSLIHCF 226 (598)
Q Consensus 148 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~ 226 (598)
..+.+..++..|+..+..+.... +.+..-|..-...+...|++++|.--.+.-.+. +|. ...+.-.-.++
T Consensus 57 n~~yk~k~Y~nal~~yt~Ai~~~-------pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~--kd~~~k~~~r~~~c~ 127 (486)
T KOG0550|consen 57 NAFYKQKTYGNALKNYTFAIDMC-------PDNASYYSNRAATLMMLGRFEEALGDARQSVRL--KDGFSKGQLREGQCH 127 (486)
T ss_pred chHHHHhhHHHHHHHHHHHHHhC-------ccchhhhchhHHHHHHHHhHhhcccchhhheec--CCCccccccchhhhh
Confidence 34555666667777777766653 445555666666666667777766655544432 111 11222233334
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CcCHHHHHHH-HHHHHhcCCHHH
Q 047932 227 SHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGV-HPNTFVYNTL-MDGFCLTGRVNH 304 (598)
Q Consensus 227 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l-l~~~~~~g~~~~ 304 (598)
...++..+|.+.++. ...+ ....++..++.+..... +|....+..+ ..++...|++++
T Consensus 128 ~a~~~~i~A~~~~~~---------~~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~ 187 (486)
T KOG0550|consen 128 LALSDLIEAEEKLKS---------KQAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDE 187 (486)
T ss_pred hhhHHHHHHHHHhhh---------hhhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchh
Confidence 444444444444431 0001 01112222222222111 1222222222 244555666666
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHH-------------HHHHHHHHhcCC
Q 047932 305 AKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTY-------------STLFLGLFEVHQ 371 (598)
Q Consensus 305 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-------------~~l~~~~~~~~~ 371 (598)
|.++--.+.+.+ ..+......-..++...++.+.+..-|++.+..+ |+...- ..=..-..+.|+
T Consensus 188 a~~ea~~ilkld-~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~ 264 (486)
T KOG0550|consen 188 AQSEAIDILKLD-ATNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGN 264 (486)
T ss_pred HHHHHHHHHhcc-cchhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccc
Confidence 666665555543 1122211111223334566666666666665542 222111 111223456788
Q ss_pred HHHHHHHHHHHhhC---CCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 047932 372 VEHALKLFDEMQHN---DVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWEL 448 (598)
Q Consensus 372 ~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 448 (598)
+..|.+.|.+.+.. +..++...|.....+..+.|+..+|+.-.+...+.+ ..-...+..-..++...+++++|.+-
T Consensus 265 y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD-~syikall~ra~c~l~le~~e~AV~d 343 (486)
T KOG0550|consen 265 YRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID-SSYIKALLRRANCHLALEKWEEAVED 343 (486)
T ss_pred hhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888764 244556667777777788888888888888777542 11122334444566677888888888
Q ss_pred HHHHHhC
Q 047932 449 FQSLSRV 455 (598)
Q Consensus 449 ~~~~~~~ 455 (598)
++...+.
T Consensus 344 ~~~a~q~ 350 (486)
T KOG0550|consen 344 YEKAMQL 350 (486)
T ss_pred HHHHHhh
Confidence 8887664
No 155
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.81 E-value=0.00035 Score=67.05 Aligned_cols=122 Identities=12% Similarity=0.054 Sum_probs=79.0
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC--CCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHH
Q 047932 352 IRPTVVTYSTLFLGLFEVHQVEHALKLFDEMQHN--DVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISY 429 (598)
Q Consensus 352 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 429 (598)
.+.+...+..++..+....+.+.+..++.+.... ....-..+..++++.|...|..+.++.+++.=...|+-||..++
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 3445666666677666666777777777666654 12222334457777777777777777777777777777777777
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 047932 430 SCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCN 473 (598)
Q Consensus 430 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 473 (598)
+.|+..+.+.|++..|.++...|...+...+..++..-+.+|.+
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK 185 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence 77777777777777777777776655555555555444444443
No 156
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.81 E-value=0.0012 Score=56.37 Aligned_cols=108 Identities=11% Similarity=-0.013 Sum_probs=78.1
Q ss_pred HHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhccHHHHHHHHHHHHHcCCCCCHhh
Q 047932 63 DYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCRIMEAAALFTKLRVFGCEPDVFT 142 (598)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~a~~~~~~~~~~~~~~~~~~ 142 (598)
..+....+.+.....+..++..+...|++++|...|+++++....+ ......
T Consensus 23 ~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~----------------------------~~~~~~ 74 (172)
T PRK02603 23 LKILPINKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDP----------------------------NDRSYI 74 (172)
T ss_pred HHHcccccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc----------------------------chHHHH
Confidence 3444444444466678888899999999999999999888642111 001356
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHH
Q 047932 143 YNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFL 205 (598)
Q Consensus 143 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 205 (598)
+..++.++.+.|++++|...+++..+.. +.+...+..+...+...|+...+..-++
T Consensus 75 ~~~la~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~lg~~~~~~g~~~~a~~~~~ 130 (172)
T PRK02603 75 LYNMGIIYASNGEHDKALEYYHQALELN-------PKQPSALNNIAVIYHKRGEKAEEAGDQD 130 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-------cccHHHHHHHHHHHHHcCChHhHhhCHH
Confidence 7888999999999999999999998865 4457777788888888887655554433
No 157
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.81 E-value=0.00081 Score=60.06 Aligned_cols=114 Identities=10% Similarity=0.037 Sum_probs=94.8
Q ss_pred CCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhc---------cHH
Q 047932 52 LITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINC---------RIM 122 (598)
Q Consensus 52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~---------~~~ 122 (598)
..+++.....++..++.+|. |...|..|..+|.++|++..|...|.+..+. .|+.......+.. ...
T Consensus 135 ~~~~~~l~a~Le~~L~~nP~--d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL--~g~n~~~~~g~aeaL~~~a~~~~ta 210 (287)
T COG4235 135 EQEMEALIARLETHLQQNPG--DAEGWDLLGRAYMALGRASDALLAYRNALRL--AGDNPEILLGLAEALYYQAGQQMTA 210 (287)
T ss_pred cccHHHHHHHHHHHHHhCCC--CchhHHHHHHHHHHhcchhHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCcccH
Confidence 34467788888888899987 9999999999999999999999999999876 4444433322222 778
Q ss_pred HHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 047932 123 EAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGN 170 (598)
Q Consensus 123 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 170 (598)
++..+|+++...+ +.++.+...|...+...|++.+|...++.|.+..
T Consensus 211 ~a~~ll~~al~~D-~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 211 KARALLRQALALD-PANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 8999999999886 3478888889999999999999999999999975
No 158
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.80 E-value=0.00092 Score=52.94 Aligned_cols=100 Identities=12% Similarity=0.081 Sum_probs=55.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC--CCHHHH
Q 047932 142 TYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENIN--PNVVTY 219 (598)
Q Consensus 142 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~ 219 (598)
++..++..+.+.|++++|.+.|+.+....+. .+.....+..+...+.+.|++++|.+.|+.+...... .....+
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~ 79 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPK----STYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDAL 79 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC----ccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHH
Confidence 3445555666666666666666666654310 0111334555666666666666666666666553211 113445
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047932 220 NSLIHCFSHADDWNEAKRLFIKMMDQ 245 (598)
Q Consensus 220 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 245 (598)
..+..++...|++++|...++++.+.
T Consensus 80 ~~~~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 80 LKLGMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 55556666666666666666666654
No 159
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.79 E-value=0.00029 Score=53.05 Aligned_cols=93 Identities=19% Similarity=0.132 Sum_probs=46.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 047932 395 NTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCND 474 (598)
Q Consensus 395 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 474 (598)
..+...+...|++++|..+++.+.+.. +.+...+..+..++...+++++|.+.++...... +.+..++..+...+...
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHH
Confidence 334445555555555555555555432 2233444555555555555555555555555432 11223444555555555
Q ss_pred CCHHHHHHHHHHHHH
Q 047932 475 GQMDKAHDLFLDMEA 489 (598)
Q Consensus 475 g~~~~A~~~~~~~~~ 489 (598)
|+++.|...+....+
T Consensus 82 ~~~~~a~~~~~~~~~ 96 (100)
T cd00189 82 GKYEEALEAYEKALE 96 (100)
T ss_pred HhHHHHHHHHHHHHc
Confidence 555555555555443
No 160
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.79 E-value=3.4e-05 Score=56.61 Aligned_cols=83 Identities=17% Similarity=0.258 Sum_probs=63.0
Q ss_pred CCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhccHHHHHHHHHHH
Q 047932 52 LITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCRIMEAAALFTKL 131 (598)
Q Consensus 52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~a~~~~~~~ 131 (598)
+|+++.|+.+|++++...|..++...+..++.++.+.|++++|..++++ .+. .+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~--~~----------------------- 55 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKL--DP----------------------- 55 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTH--HH-----------------------
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCC--CC-----------------------
Confidence 6899999999999999988522566777799999999999999999987 321 11
Q ss_pred HHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHH
Q 047932 132 RVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEM 166 (598)
Q Consensus 132 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 166 (598)
.+....-.++.+|.+.|++++|+++|++.
T Consensus 56 ------~~~~~~~l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 56 ------SNPDIHYLLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp ------CHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred ------CCHHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence 12334445688899999999999998763
No 161
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.79 E-value=4.3e-05 Score=44.57 Aligned_cols=32 Identities=38% Similarity=0.711 Sum_probs=16.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC
Q 047932 183 TYNTIIDGVCKEGFVDKAMELFLQMKDENINP 214 (598)
Q Consensus 183 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 214 (598)
+|+.++.+|++.|+++.|.++|+.|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555544443
No 162
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.77 E-value=0.00066 Score=54.83 Aligned_cols=95 Identities=9% Similarity=-0.012 Sum_probs=64.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 047932 143 YNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTYNSL 222 (598)
Q Consensus 143 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 222 (598)
.-.+...+...|++++|..+|+-+...+ +-+..-|..|..++-..|++.+|+..|......++ .|...+-.+
T Consensus 38 lY~~A~~ly~~G~l~~A~~~f~~L~~~D-------p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~a 109 (157)
T PRK15363 38 LYRYAMQLMEVKEFAGAARLFQLLTIYD-------AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAA 109 (157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-------cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHH
Confidence 3445555667777777777777776654 44566666777777777777777777777776653 366667777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC
Q 047932 223 IHCFSHADDWNEAKRLFIKMMDQ 245 (598)
Q Consensus 223 ~~~~~~~~~~~~a~~~~~~~~~~ 245 (598)
..++...|+.+.|.+.|+..+..
T Consensus 110 g~c~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 110 AECYLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 77777777777777777766554
No 163
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.77 E-value=0.0034 Score=56.51 Aligned_cols=54 Identities=13% Similarity=-0.041 Sum_probs=43.2
Q ss_pred cccCCChHHHHHHHHHHHHcCCCCCCHHH---HHHHHHHHHhcCChhHHHHHHHHHHhC
Q 047932 49 DINLITPNEALCIFDYMLRMHPSPPPVSS---FNILFGCLAKNKHYDTVLSLFKRLNST 104 (598)
Q Consensus 49 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~ 104 (598)
..+.|++++|.+.|+.++...|. +..+ ...++.++.+.+++++|...|++.++.
T Consensus 42 ~~~~g~y~~Ai~~f~~l~~~yP~--s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 42 KLQDGNWKQAITQLEALDNRYPF--GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 45678999999999999988887 3333 356778888899999999999988876
No 164
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.77 E-value=0.00022 Score=63.19 Aligned_cols=92 Identities=13% Similarity=0.101 Sum_probs=62.8
Q ss_pred CCcccccCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhccHHHH
Q 047932 45 SGQGDINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCRIMEA 124 (598)
Q Consensus 45 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~a 124 (598)
-|+.+.+.++|.+|+..|..++...|. |+..|..-..+|.+.|.++.|++-.+..+... |
T Consensus 87 eGN~~m~~~~Y~eAv~kY~~AI~l~P~--nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD--p---------------- 146 (304)
T KOG0553|consen 87 EGNKLMKNKDYQEAVDKYTEAIELDPT--NAVYYCNRAAAYSKLGEYEDAVKDCESALSID--P---------------- 146 (304)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhcCCC--cchHHHHHHHHHHHhcchHHHHHHHHHHHhcC--h----------------
Confidence 355556677777777777777777765 77777777777777777777777777666431 1
Q ss_pred HHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 047932 125 AALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANG 169 (598)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 169 (598)
.-..+|..|..+|...|++++|++.|++.+..
T Consensus 147 -------------~yskay~RLG~A~~~~gk~~~A~~aykKaLel 178 (304)
T KOG0553|consen 147 -------------HYSKAYGRLGLAYLALGKYEEAIEAYKKALEL 178 (304)
T ss_pred -------------HHHHHHHHHHHHHHccCcHHHHHHHHHhhhcc
Confidence 12346677777777777777777777777764
No 165
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.76 E-value=2.9e-05 Score=53.68 Aligned_cols=55 Identities=20% Similarity=0.284 Sum_probs=50.1
Q ss_pred ccccCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 047932 48 GDINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNST 104 (598)
Q Consensus 48 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 104 (598)
.+.+.|++++|...|+.+++.+|. ++.+|..++.++.+.|++++|...|+++++.
T Consensus 6 ~~~~~g~~~~A~~~~~~~l~~~P~--~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 6 ALYQQGDYDEAIAAFEQALKQDPD--NPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHCTHHHHHHHHHHHHHCCSTT--HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 456889999999999999999987 9999999999999999999999999999875
No 166
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.73 E-value=0.00088 Score=56.88 Aligned_cols=116 Identities=11% Similarity=-0.038 Sum_probs=81.6
Q ss_pred hHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhccHHHHHHHHHHHHHc
Q 047932 55 PNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCRIMEAAALFTKLRVF 134 (598)
Q Consensus 55 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~a~~~~~~~~~~ 134 (598)
+..+...+..+++..+.......|..++..+..+|++++|...|++++... |+.
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~--~~~------------------------ 68 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLE--IDP------------------------ 68 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--ccc------------------------
Confidence 555666666665554442346677888888889999999999999988642 210
Q ss_pred CCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHH-------hcCCHHHHHHHHH
Q 047932 135 GCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVC-------KEGFVDKAMELFL 205 (598)
Q Consensus 135 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~-------~~g~~~~A~~~~~ 205 (598)
.....++..+..+|...|++++|+..++...... +....++..+...+. ..|+++.|...++
T Consensus 69 --~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-------~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 69 --YDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-------PFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFD 137 (168)
T ss_pred --hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------cCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHH
Confidence 1123478889999999999999999999998865 444566777777776 5566554444443
No 167
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.73 E-value=3.5e-05 Score=56.51 Aligned_cols=81 Identities=17% Similarity=0.133 Sum_probs=35.8
Q ss_pred cCCHHHHHHHHHHHhhCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 047932 404 NGFVLEALELFCAIGNSKYE-LDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHD 482 (598)
Q Consensus 404 ~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 482 (598)
.|+++.|+.+++++...... ++...+..+..+|.+.|++++|+.++++ .+.+. .+......++.++.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHH
Confidence 34555555555555543221 1233333455555555555555555555 21111 112222233455555555555555
Q ss_pred HHHH
Q 047932 483 LFLD 486 (598)
Q Consensus 483 ~~~~ 486 (598)
++++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 5543
No 168
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.72 E-value=0.039 Score=51.07 Aligned_cols=292 Identities=13% Similarity=0.085 Sum_probs=172.4
Q ss_pred HHHHHHHHH--hcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHH--HHhCCCHHHHHHHHHHHHhcCCCcCHH--HHHHH
Q 047932 219 YNSLIHCFS--HADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDE--LCKNGKMEEASRLLDLMIQIGVHPNTF--VYNTL 292 (598)
Q Consensus 219 ~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~l 292 (598)
|..|-.+++ -.||-..|.++-.+..+. +..|......++.+ -.-.|+++.|.+-|+.|... |... -...|
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgL 160 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGL 160 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHH
Confidence 444444433 356666666666554432 23344444444443 33567888888888888752 1211 12222
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCC-CCCCHH--HHHHHHHHH---
Q 047932 293 MDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKG-IRPTVV--TYSTLFLGL--- 366 (598)
Q Consensus 293 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~--~~~~l~~~~--- 366 (598)
.-...+.|+.+.|..+-+.....- +.-...+...+...+..|+|+.|+++++.-.... +.++.. .-..|+.+-
T Consensus 161 yleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s 239 (531)
T COG3898 161 YLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMS 239 (531)
T ss_pred HHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHH
Confidence 233345677777777777766543 2344556777888888888888888887655432 222321 111222111
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCcCHH-HHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 047932 367 FEVHQVEHALKLFDEMQHNDVAADTY-IYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETA 445 (598)
Q Consensus 367 ~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 445 (598)
.-..+...|...-.+..+. .|+.. .-..-..++.+.|+..++-.+++.+-+.. |.+.++..++ +.+.|+ .+
T Consensus 240 ~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~e--PHP~ia~lY~--~ar~gd--ta 311 (531)
T COG3898 240 LLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAE--PHPDIALLYV--RARSGD--TA 311 (531)
T ss_pred HhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcC--CChHHHHHHH--HhcCCC--cH
Confidence 1123455666655555543 44422 22334567889999999999999988774 4444333222 334444 34
Q ss_pred HHHHHHHHh-CCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCccccchhHHHH
Q 047932 446 WELFQSLSR-VGLLPN-VVTYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFIR-NNETSKSSRGKLMS 522 (598)
Q Consensus 446 ~~~~~~~~~-~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~~ 522 (598)
+.-+++... ..++|| ......+..+....|++..|..--+.... ..|....|..+...-.. .|+-.++.. ++.
T Consensus 312 ~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~--wlA 387 (531)
T COG3898 312 LDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQ--WLA 387 (531)
T ss_pred HHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHH--HHH
Confidence 433433322 113444 56666778888889999998888777765 46888888888877654 488888888 999
Q ss_pred HHHhc
Q 047932 523 QMSSC 527 (598)
Q Consensus 523 ~~~~~ 527 (598)
+..+.
T Consensus 388 qav~A 392 (531)
T COG3898 388 QAVKA 392 (531)
T ss_pred HHhcC
Confidence 98876
No 169
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.72 E-value=0.00031 Score=62.30 Aligned_cols=100 Identities=17% Similarity=0.212 Sum_probs=74.5
Q ss_pred HHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCH
Q 047932 399 DGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPN-VVTYNIMIHGLCNDGQM 477 (598)
Q Consensus 399 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~ 477 (598)
.-+.+.+++.+|+..|.++++.. +-|...|..-..+|.+.|.++.|++-.+..+.. .|. ..+|..|..+|...|++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--Dp~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI--DPHYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHccCcH
Confidence 34667788888888888888765 346777777788888888888888888887774 444 56788888888888888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHH
Q 047932 478 DKAHDLFLDMEAKGVEPDCVIFNTIM 503 (598)
Q Consensus 478 ~~A~~~~~~~~~~~~~p~~~~~~~l~ 503 (598)
.+|++.|++.++ +.|+-.+|-.=+
T Consensus 166 ~~A~~aykKaLe--ldP~Ne~~K~nL 189 (304)
T KOG0553|consen 166 EEAIEAYKKALE--LDPDNESYKSNL 189 (304)
T ss_pred HHHHHHHHhhhc--cCCCcHHHHHHH
Confidence 888888888876 456655554433
No 170
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.71 E-value=0.047 Score=51.71 Aligned_cols=435 Identities=15% Similarity=0.141 Sum_probs=230.0
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHHh------HHHHHhc----cHHHHHHHHHHHHHcCCCCCHhhHHHHHHH--HHh
Q 047932 85 LAKNKHYDTVLSLFKRLNSTGLFPDLYT------HSILINC----RIMEAAALFTKLRVFGCEPDVFTYNTLING--LCR 152 (598)
Q Consensus 85 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~------~~~ll~~----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~ 152 (598)
+.+++++.+|..+|.+..+.. ..++.. .+.++++ +++.....+....+. .| ...|..+..+ +.+
T Consensus 16 Lqkq~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~Y~ 91 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQ--FG-KSAYLPLFKALVAYK 91 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHh--cC-CchHHHHHHHHHHHH
Confidence 345666666666666655432 112111 2233333 444444444444443 12 2344444443 347
Q ss_pred cCChhHHHHHHHHHHhcCCCC---ccc-----cCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC----CCHHHHH
Q 047932 153 TGHTIVALNLFEEMANGNGEF---GVV-----CKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENIN----PNVVTYN 220 (598)
Q Consensus 153 ~g~~~~A~~~~~~~~~~~~~~---~~~-----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~~ 220 (598)
.+++.+|.+.+.....+-... ... .-+|-..=+..++.+...|++.++..+++++...-.+ -+..+|+
T Consensus 92 ~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd 171 (549)
T PF07079_consen 92 QKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYD 171 (549)
T ss_pred hhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHH
Confidence 889999999888776652100 000 0011122256678889999999999999988765333 5788888
Q ss_pred HHHHHHHhc--------CCH-------HHHHHHHHHHHHC------CCCCCHhhHHHHHHHHHhCC--CHHHHHHHHHHH
Q 047932 221 SLIHCFSHA--------DDW-------NEAKRLFIKMMDQ------GVHPNVVTFSVIVDELCKNG--KMEEASRLLDLM 277 (598)
Q Consensus 221 ~l~~~~~~~--------~~~-------~~a~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~ 277 (598)
.++-.+.+. ... +.+.-..++|... .+.|.......++....-.. +..--.++++.-
T Consensus 172 ~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~W 251 (549)
T PF07079_consen 172 RAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENW 251 (549)
T ss_pred HHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHH
Confidence 754443321 111 2222222222211 12333333333443332211 122222333333
Q ss_pred HhcCCCcCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC----CChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCC
Q 047932 278 IQIGVHPNTF-VYNTLMDGFCLTGRVNHAKELFVSMESNGCM----HDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGI 352 (598)
Q Consensus 278 ~~~~~~~~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 352 (598)
...-+.|+-. +...+...+.. +.+++..+.+.+....+. .-..++..++....+.++...|...+.-+....
T Consensus 252 e~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ld- 328 (549)
T PF07079_consen 252 ENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILD- 328 (549)
T ss_pred HhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcC-
Confidence 3333444433 33344444433 555555555544433211 134567778888888999999988887766542
Q ss_pred CCCHHHHH-------HHHHHHH----hcCCHHHHHHHHHHHhhCCCCcCHHHHHHHH---HHHHHcCC-HHHHHHHHHHH
Q 047932 353 RPTVVTYS-------TLFLGLF----EVHQVEHALKLFDEMQHNDVAADTYIYNTFI---DGLCKNGF-VLEALELFCAI 417 (598)
Q Consensus 353 ~~~~~~~~-------~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~g~-~~~A~~~~~~~ 417 (598)
|+...-. .+-...+ ...+...-+.+|......++.. ......++ .-+-+.|. -++|+.+++.+
T Consensus 329 -p~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDr-qQLvh~L~~~Ak~lW~~g~~dekalnLLk~i 406 (549)
T PF07079_consen 329 -PRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDR-QQLVHYLVFGAKHLWEIGQCDEKALNLLKLI 406 (549)
T ss_pred -CcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccH-HHHHHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 2222111 1111111 1123334455566665554321 11222222 22334454 78899999988
Q ss_pred hhCCCCCCHHHHHHHH----HHHHH---cCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHH--HHhcCCHHHHHHHH
Q 047932 418 GNSKYELDIISYSCLI----DGLCK---IGKLETAWELFQSLSRVGLLPN----VVTYNIMIHG--LCNDGQMDKAHDLF 484 (598)
Q Consensus 418 ~~~~~~~~~~~~~~l~----~~~~~---~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~--~~~~g~~~~A~~~~ 484 (598)
.+.. +-|..+-+.+. ..|.. ...+.+-..+-+-+.+.|+.|- ...-|.|.++ +..+|++.++.-.-
T Consensus 407 l~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys 485 (549)
T PF07079_consen 407 LQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYS 485 (549)
T ss_pred HHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 8643 33444333322 22222 2234444555555566777764 2334445443 44789999998777
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCccccchhHHHHHHHhcccCCCCCChHHHHH
Q 047932 485 LDMEAKGVEPDCVIFNTIMLGFIRNNETSKSSRGKLMSQMSSCWSMCFQPKTLICSI 541 (598)
Q Consensus 485 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~ 541 (598)
.-+.+ +.|++.+|..++-++....++++|.. ++..+. |+...+..
T Consensus 486 ~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~--~l~~LP--------~n~~~~ds 530 (549)
T PF07079_consen 486 SWLTK--IAPSPQAYRLLGLCLMENKRYQEAWE--YLQKLP--------PNERMRDS 530 (549)
T ss_pred HHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHH--HHHhCC--------CchhhHHH
Confidence 66665 68999999999999999999999999 988774 66666554
No 171
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.71 E-value=0.00045 Score=66.30 Aligned_cols=122 Identities=12% Similarity=0.184 Sum_probs=94.3
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHH
Q 047932 178 KPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDE--NINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFS 255 (598)
Q Consensus 178 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 255 (598)
+.+......+++.+....+.+.+..++.+.... ....-..|..++++.|.+.|..+.++.++..=...|+-||..+++
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 556667777788887888888888888877764 222234455688999999999999999998888889999999999
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhc
Q 047932 256 VIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTLMDGFCLT 299 (598)
Q Consensus 256 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 299 (598)
.++..+.+.|++..|.++...|...+...+..++...+.+|.+.
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 99999999999999999888887776666666666655555554
No 172
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.70 E-value=0.00072 Score=62.52 Aligned_cols=145 Identities=14% Similarity=0.099 Sum_probs=100.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHH-cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 047932 357 VTYSTLFLGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCK-NGFVLEALELFCAIGNSKYELDIISYSCLIDG 435 (598)
Q Consensus 357 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 435 (598)
.+|..++....+.+..+.|..+|.++.+.+ ..+..+|......-.+ .++.+.|..+|+...+. +..+...|...+..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 467788888888888999999999888543 3344455555555334 46666699999988865 45577888888898
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 047932 436 LCKIGKLETAWELFQSLSRVGLLPNV---VTYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGF 506 (598)
Q Consensus 436 ~~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 506 (598)
+...++.+.|..+|++.... +.++. ..|..++..-.+.|+.+.+.++.+++.+. -|+...+..+..-|
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~~ry 150 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELFSDRY 150 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHHHCCT
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHHHHHh
Confidence 89999999999999988765 33222 47888888888889999999998888874 34433444444333
No 173
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.68 E-value=0.0014 Score=62.93 Aligned_cols=85 Identities=14% Similarity=0.020 Sum_probs=37.7
Q ss_pred hcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 047932 368 EVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWE 447 (598)
Q Consensus 368 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 447 (598)
..|+++.|+..|.++++.. +.+...+..+..++...|++++|+..+++++... +.+...|..+..+|...|++++|+.
T Consensus 14 ~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~eA~~ 91 (356)
T PLN03088 14 VDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQTAKA 91 (356)
T ss_pred HcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 3444444444444444432 2233444444444444444444444444444332 2233344444444444444444444
Q ss_pred HHHHHHh
Q 047932 448 LFQSLSR 454 (598)
Q Consensus 448 ~~~~~~~ 454 (598)
.|++.++
T Consensus 92 ~~~~al~ 98 (356)
T PLN03088 92 ALEKGAS 98 (356)
T ss_pred HHHHHHH
Confidence 4444444
No 174
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.68 E-value=0.002 Score=61.99 Aligned_cols=92 Identities=9% Similarity=-0.049 Sum_probs=79.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 047932 398 IDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQM 477 (598)
Q Consensus 398 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 477 (598)
...+...|++++|+..|++++... +.+...|..+..+|...|++++|+..++++++.. +.+...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCH
Confidence 455678899999999999999875 4478889999999999999999999999999863 23577888899999999999
Q ss_pred HHHHHHHHHHHHCC
Q 047932 478 DKAHDLFLDMEAKG 491 (598)
Q Consensus 478 ~~A~~~~~~~~~~~ 491 (598)
++|+..|+++++.+
T Consensus 87 ~eA~~~~~~al~l~ 100 (356)
T PLN03088 87 QTAKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999999864
No 175
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.66 E-value=0.0016 Score=60.30 Aligned_cols=145 Identities=16% Similarity=0.183 Sum_probs=106.1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHH
Q 047932 322 VSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLG-LFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDG 400 (598)
Q Consensus 322 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 400 (598)
.+|..++....+.+..+.|..+|.++...+. .+...|...... +...++.+.|..+|+...+. .+.+...+...+..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~-~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKR-CTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 4688888988898899999999999986532 244455555444 33357777799999998876 46678888889999
Q ss_pred HHHcCCHHHHHHHHHHHhhCCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 047932 401 LCKNGFVLEALELFCAIGNSKYELDI---ISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGL 471 (598)
Q Consensus 401 ~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 471 (598)
+...|+.+.|..+|++.+.. +.++. ..|...+..-.+.|+.+.+.++.+++.+. .|+...+..++.-|
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~~ry 150 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELFSDRY 150 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHHHCCT
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHHHHHh
Confidence 99999999999999999865 23222 48999999999999999999999999884 44544444444433
No 176
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.65 E-value=0.0017 Score=55.09 Aligned_cols=95 Identities=14% Similarity=-0.036 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 047932 391 TYIYNTFIDGLCKNGFVLEALELFCAIGNSKYEL--DIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMI 468 (598)
Q Consensus 391 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 468 (598)
...+..++..+...|++++|+..|+++......+ ...++..+..++...|++++|+..+++..... +....++..+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 3445555666666677777777777665442121 23456667777777777777777777766531 11234444444
Q ss_pred HHHH-------hcCCHHHHHHHHHH
Q 047932 469 HGLC-------NDGQMDKAHDLFLD 486 (598)
Q Consensus 469 ~~~~-------~~g~~~~A~~~~~~ 486 (598)
..+. ..|+++.|...+++
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHH
Confidence 4444 56666655444443
No 177
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.65 E-value=0.0072 Score=56.23 Aligned_cols=122 Identities=11% Similarity=0.067 Sum_probs=57.0
Q ss_pred HHhc-CCHHHHHHHHHHHhhC----CCC-cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCC-----CCHH-HHHHHH
Q 047932 366 LFEV-HQVEHALKLFDEMQHN----DVA-ADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYE-----LDII-SYSCLI 433 (598)
Q Consensus 366 ~~~~-~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~-~~~~l~ 433 (598)
|... |+++.|.+.|.++.+. +.+ .-..++..+...+.+.|++++|..+|+++...... .+.. .+...+
T Consensus 124 ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~ 203 (282)
T PF14938_consen 124 YEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAI 203 (282)
T ss_dssp HCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHH
Confidence 4344 5666666666555431 100 01234445556666777777777777766543211 1111 223334
Q ss_pred HHHHHcCCHHHHHHHHHHHHhC--CCCCC--HHHHHHHHHHHHh--cCCHHHHHHHHHHH
Q 047932 434 DGLCKIGKLETAWELFQSLSRV--GLLPN--VVTYNIMIHGLCN--DGQMDKAHDLFLDM 487 (598)
Q Consensus 434 ~~~~~~g~~~~A~~~~~~~~~~--~~~p~--~~~~~~l~~~~~~--~g~~~~A~~~~~~~ 487 (598)
-++...|++..|.+.+++.... ++..+ ......|+.++-. ...++.++.-|+.+
T Consensus 204 l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~ 263 (282)
T PF14938_consen 204 LCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSI 263 (282)
T ss_dssp HHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTS
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHccc
Confidence 4556667777777777776543 12212 3344455555542 23344444444443
No 178
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.64 E-value=0.042 Score=49.54 Aligned_cols=57 Identities=14% Similarity=0.077 Sum_probs=31.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHccC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047932 326 TLINGYCKTKNVEEALNLYRKMLPK--GIRPTVVTYSTLFLGLFEVHQVEHALKLFDEM 382 (598)
Q Consensus 326 ~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 382 (598)
.+...|.+.|.+..|..-++.+.+. +.+........++.+|...|..++|..+...+
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 3445566666666666666666554 11223344555556666666666666655444
No 179
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.61 E-value=0.093 Score=52.42 Aligned_cols=158 Identities=15% Similarity=0.158 Sum_probs=93.8
Q ss_pred cCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhC-CCCCCHHHHHHHHHHHHhcCC
Q 047932 153 TGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDE-NINPNVVTYNSLIHCFSHADD 231 (598)
Q Consensus 153 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~ 231 (598)
-|++++|.++|-.|.+++ ..|..+.+.|++-...++++.--.. .-.--..+|+.+...++....
T Consensus 747 ~g~feeaek~yld~drrD---------------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~ 811 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADRRD---------------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMME 811 (1189)
T ss_pred hcchhHhhhhhhccchhh---------------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHH
Confidence 477777777777665543 2345566677776666666532211 000113467777777777778
Q ss_pred HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 047932 232 WNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTLMDGFCLTGRVNHAKELFVS 311 (598)
Q Consensus 232 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 311 (598)
|++|.+.|..-.. ....+.++.+..++++-+.+...+ +.+....-.+..++.+.|.-++|.+.|-+
T Consensus 812 We~A~~yY~~~~~---------~e~~~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 812 WEEAAKYYSYCGD---------TENQIECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLR 877 (1189)
T ss_pred HHHHHHHHHhccc---------hHhHHHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHh
Confidence 8888777755321 123456666666666555444433 33566666777778888877777766644
Q ss_pred HHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHc
Q 047932 312 MESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKML 348 (598)
Q Consensus 312 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 348 (598)
... | ..-+..|...++|.+|.++-+...
T Consensus 878 ~s~----p-----kaAv~tCv~LnQW~~avelaq~~~ 905 (1189)
T KOG2041|consen 878 RSL----P-----KAAVHTCVELNQWGEAVELAQRFQ 905 (1189)
T ss_pred ccC----c-----HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 321 1 133456667777777777766543
No 180
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.60 E-value=0.0012 Score=49.30 Aligned_cols=78 Identities=15% Similarity=0.324 Sum_probs=52.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCC-CCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHCCCCCCHhhHH
Q 047932 185 NTIIDGVCKEGFVDKAMELFLQMKDENI-NPNVVTYNSLIHCFSHAD--------DWNEAKRLFIKMMDQGVHPNVVTFS 255 (598)
Q Consensus 185 ~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~ 255 (598)
...|..+...+++.....+|+.+++.|+ .|++.+|+.++.+.++.. ..-+.+.+|+.|+..+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 4455666666788888888888887777 778888887777765542 2334556666666666666666666
Q ss_pred HHHHHHH
Q 047932 256 VIVDELC 262 (598)
Q Consensus 256 ~l~~~~~ 262 (598)
.++..+.
T Consensus 109 ivl~~Ll 115 (120)
T PF08579_consen 109 IVLGSLL 115 (120)
T ss_pred HHHHHHH
Confidence 6666554
No 181
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.59 E-value=0.02 Score=47.11 Aligned_cols=126 Identities=13% Similarity=0.060 Sum_probs=84.8
Q ss_pred CcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC---HHHH
Q 047932 388 AADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPN---VVTY 464 (598)
Q Consensus 388 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~ 464 (598)
.|+...-..+..+....|+..+|...|++...--+.-|....-.+.++....+++..|...++.+.+.. |. ..+.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~--pa~r~pd~~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYN--PAFRSPDGH 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcC--CccCCCCch
Confidence 456666666777777777777777777777754455567777777777777777777777777776642 21 2334
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccccch
Q 047932 465 NIMIHGLCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFIRNNETSKSSR 517 (598)
Q Consensus 465 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 517 (598)
..+.+.+...|++..|...|+...+. -|+...-......+.++|+.+++..
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANA 214 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHH
Confidence 45667777777777777777777764 4555555555556667776655554
No 182
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.58 E-value=0.01 Score=55.25 Aligned_cols=25 Identities=20% Similarity=0.137 Sum_probs=14.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHH
Q 047932 143 YNTLINGLCRTGHTIVALNLFEEMA 167 (598)
Q Consensus 143 ~~~l~~~~~~~g~~~~A~~~~~~~~ 167 (598)
|......|-..|++++|.+.|.+..
T Consensus 38 y~~Aa~~fk~~~~~~~A~~ay~kAa 62 (282)
T PF14938_consen 38 YEKAANCFKLAKDWEKAAEAYEKAA 62 (282)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccchhHHHHHHHH
Confidence 3444455666677777777666654
No 183
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.58 E-value=0.0015 Score=48.75 Aligned_cols=78 Identities=19% Similarity=0.384 Sum_probs=54.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHCCCCCCHHHHHH
Q 047932 431 CLIDGLCKIGKLETAWELFQSLSRVGL-LPNVVTYNIMIHGLCNDG--------QMDKAHDLFLDMEAKGVEPDCVIFNT 501 (598)
Q Consensus 431 ~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g--------~~~~A~~~~~~~~~~~~~p~~~~~~~ 501 (598)
..|..+...+++.....+|+.+.+.|+ .|+..+|+.++.+.++.. +.-+.+.+|+.|+..+++|+..+|+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 344445555777777777777777777 677777777777665432 34456778888888888888888888
Q ss_pred HHHHHHh
Q 047932 502 IMLGFIR 508 (598)
Q Consensus 502 l~~~~~~ 508 (598)
++..+.+
T Consensus 110 vl~~Llk 116 (120)
T PF08579_consen 110 VLGSLLK 116 (120)
T ss_pred HHHHHHH
Confidence 8777654
No 184
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.54 E-value=0.0055 Score=61.65 Aligned_cols=62 Identities=10% Similarity=0.014 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccccchhHHHHHHHh
Q 047932 461 VVTYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFIRNNETSKSSRGKLMSQMSS 526 (598)
Q Consensus 461 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 526 (598)
...|..+...+...|++++|...+++++..+ |+...|..+...+...|+.++|.+ .++++.+
T Consensus 420 ~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~--~~~~A~~ 481 (517)
T PRK10153 420 PRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAAD--AYSTAFN 481 (517)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHH--HHHHHHh
Confidence 4455555555555677777777777776654 466666666777777777777777 7766663
No 185
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.51 E-value=0.0097 Score=59.93 Aligned_cols=141 Identities=11% Similarity=0.030 Sum_probs=81.5
Q ss_pred CCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHc--------CCHHHHHHHHHHHhhC
Q 047932 354 PTVVTYSTLFLGLFEV-----HQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKN--------GFVLEALELFCAIGNS 420 (598)
Q Consensus 354 ~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~A~~~~~~~~~~ 420 (598)
.+...|...+++.... ++...|..+|+++++.. +.....+..+..++... ++...+.+...+....
T Consensus 335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld-P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al 413 (517)
T PRK10153 335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE-PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVAL 413 (517)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhc
Confidence 3455555555543321 22456666666666542 22233333333222211 1223334444443322
Q ss_pred -CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 047932 421 -KYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPDCVIF 499 (598)
Q Consensus 421 -~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 499 (598)
....+...|..+.......|++++|...++++.+. .|+...|..+...+...|+.++|.+.++++... .|...+|
T Consensus 414 ~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L--~P~~pt~ 489 (517)
T PRK10153 414 PELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFNL--RPGENTL 489 (517)
T ss_pred ccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCchH
Confidence 12345567777766677778888888888888875 467778888888888888888888888888764 3444443
No 186
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.50 E-value=0.00015 Score=41.15 Aligned_cols=29 Identities=41% Similarity=0.861 Sum_probs=17.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 047932 183 TYNTIIDGVCKEGFVDKAMELFLQMKDEN 211 (598)
Q Consensus 183 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 211 (598)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45666666666666666666666665544
No 187
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.43 E-value=0.0002 Score=40.65 Aligned_cols=29 Identities=41% Similarity=0.854 Sum_probs=18.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 047932 463 TYNIMIHGLCNDGQMDKAHDLFLDMEAKG 491 (598)
Q Consensus 463 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 491 (598)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45666666666666666666666666554
No 188
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.43 E-value=0.00038 Score=48.00 Aligned_cols=56 Identities=16% Similarity=0.202 Sum_probs=26.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047932 433 IDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEA 489 (598)
Q Consensus 433 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 489 (598)
...+...|++++|...|+++++.. +-+...+..+..++...|++++|...|+++++
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344445555555555555555432 11334444455555555555555555555544
No 189
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.43 E-value=0.02 Score=50.14 Aligned_cols=69 Identities=13% Similarity=0.150 Sum_probs=38.4
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhccHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhc
Q 047932 74 PVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRT 153 (598)
Q Consensus 74 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 153 (598)
++..+...+..+...|++.+|+..|+++... .|+. +--..+...++.++.+.
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~--~P~s--------------------------~~a~~A~l~la~a~y~~ 55 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDR--YPNS--------------------------PYAPQAQLMLAYAYYKQ 55 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH---TTS--------------------------TTHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCC--------------------------hHHHHHHHHHHHHHHHc
Confidence 3344555555566677777777777776654 1211 11123345566677777
Q ss_pred CChhHHHHHHHHHHhcC
Q 047932 154 GHTIVALNLFEEMANGN 170 (598)
Q Consensus 154 g~~~~A~~~~~~~~~~~ 170 (598)
|+++.|...++++.+..
T Consensus 56 ~~y~~A~~~~~~fi~~y 72 (203)
T PF13525_consen 56 GDYEEAIAAYERFIKLY 72 (203)
T ss_dssp T-HHHHHHHHHHHHHH-
T ss_pred CCHHHHHHHHHHHHHHC
Confidence 77777777777777654
No 190
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.39 E-value=0.0014 Score=60.51 Aligned_cols=133 Identities=12% Similarity=-0.053 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHh----hCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----CCC-CCCHH
Q 047932 393 IYNTFIDGLCKNGFVLEALELFCAIG----NSKYE-LDIISYSCLIDGLCKIGKLETAWELFQSLSR----VGL-LPNVV 462 (598)
Q Consensus 393 ~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~-~p~~~ 462 (598)
.|..+...|.-.|+++.|+...+.-+ +.|-+ .-...+..+..+++-.|+++.|.+.|+.... .|- .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 34445555555667777666554322 11100 1123456666777777777777776665432 221 11233
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHHhcCCccccchhHHHHHHHhc
Q 047932 463 TYNIMIHGLCNDGQMDKAHDLFLDMEAK-----GVEPDCVIFNTIMLGFIRNNETSKSSRGKLMSQMSSC 527 (598)
Q Consensus 463 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 527 (598)
+..+|...|.-..++++|+.++.+-+.- ...-....+.+|..+|...|..++|.. +.+...+.
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~--fae~hl~~ 344 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALY--FAELHLRS 344 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHH--HHHHHHHH
Confidence 4445666666666777777766654321 111234566667777777777777776 66655443
No 191
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.35 E-value=0.064 Score=44.31 Aligned_cols=131 Identities=13% Similarity=0.180 Sum_probs=89.1
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHhhHHH
Q 047932 178 KPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGV-HPNVVTFSV 256 (598)
Q Consensus 178 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ 256 (598)
-|+......|..++.+.|+..+|...|++...--.--|....-.+..+....+++..|...++++.+... ..++.+...
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 4566666778888888888888888888877644455677777778888888888888888888776531 112344556
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 047932 257 IVDELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTLMDGFCLTGRVNHAKELFV 310 (598)
Q Consensus 257 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 310 (598)
+.+.+...|++..|...|+..... -|+...-......+.+.|+.+++..-+.
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~ 217 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYV 217 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHH
Confidence 777888888888888888888775 3444433334444566666555544333
No 192
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.35 E-value=0.019 Score=44.73 Aligned_cols=92 Identities=14% Similarity=0.098 Sum_probs=50.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHhhHHHHHHHHH
Q 047932 187 IIDGVCKEGFVDKAMELFLQMKDENINPN--VVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVH--PNVVTFSVIVDELC 262 (598)
Q Consensus 187 li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~ 262 (598)
+..++-..|+.++|+.+|++....|+... ...+..+...+...|++++|..+++........ .+......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 34455556667777777776666655433 234445556666667777777766666554111 01122222334555
Q ss_pred hCCCHHHHHHHHHHHH
Q 047932 263 KNGKMEEASRLLDLMI 278 (598)
Q Consensus 263 ~~g~~~~a~~~~~~~~ 278 (598)
..|+.++|+..+-...
T Consensus 87 ~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 87 NLGRPKEALEWLLEAL 102 (120)
T ss_pred HCCCHHHHHHHHHHHH
Confidence 6666666666665544
No 193
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.35 E-value=0.0088 Score=55.50 Aligned_cols=265 Identities=12% Similarity=0.039 Sum_probs=147.6
Q ss_pred CcccccCCChHHHHHHHHHHHHcCCCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHH--hC--CCC----CCHHhH
Q 047932 46 GQGDINLITPNEALCIFDYMLRMHPSPPPV----SSFNILFGCLAKNKHYDTVLSLFKRLN--ST--GLF----PDLYTH 113 (598)
Q Consensus 46 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~--~~~----p~~~~~ 113 (598)
|+-+++.|+...-..+|+.+++.+.. +. .+|..+.++|.-.++|++|++....=+ .+ |-. ...-.+
T Consensus 24 GERLck~gdcraGv~ff~aA~qvGTe--Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNL 101 (639)
T KOG1130|consen 24 GERLCKMGDCRAGVDFFKAALQVGTE--DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNL 101 (639)
T ss_pred HHHHHhccchhhhHHHHHHHHHhcch--HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccc
Confidence 55678999999999999999987654 33 346677777777788888877653211 00 000 000000
Q ss_pred HHHHhc--cHHHHHHHHHHH----HHcCC-CCCHhhHHHHHHHHHhcCC--------------------hhHHHHHHHHH
Q 047932 114 SILINC--RIMEAAALFTKL----RVFGC-EPDVFTYNTLINGLCRTGH--------------------TIVALNLFEEM 166 (598)
Q Consensus 114 ~~ll~~--~~~~a~~~~~~~----~~~~~-~~~~~~~~~l~~~~~~~g~--------------------~~~A~~~~~~~ 166 (598)
...+.. .+++|+..-.+- .+.|- .....++-.|...|...|+ ++.|.+.|.+=
T Consensus 102 GNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eN 181 (639)
T KOG1130|consen 102 GNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMEN 181 (639)
T ss_pred cchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHH
Confidence 000110 444444322211 11110 0123455567777766553 12333333322
Q ss_pred HhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhh----CCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 047932 167 ANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKD----ENIN-PNVVTYNSLIHCFSHADDWNEAKRLFIK 241 (598)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 241 (598)
++.....|. --.-...|..|...|.-.|+++.|+...+.-.. -|-. .....+..|..+++-.|+++.|.+.|+.
T Consensus 182 L~l~~~lgD-r~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~ 260 (639)
T KOG1130|consen 182 LELSEKLGD-RLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKL 260 (639)
T ss_pred HHHHHHhhh-HHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHH
Confidence 211000000 001123456666667777888888876654332 1211 1234677788888888999988888886
Q ss_pred HHHC----CC-CCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhc-----CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 047932 242 MMDQ----GV-HPNVVTFSVIVDELCKNGKMEEASRLLDLMIQI-----GVHPNTFVYNTLMDGFCLTGRVNHAKELFVS 311 (598)
Q Consensus 242 ~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 311 (598)
.... |- ......+.+|...|.-..++++|+.++.+-+.. +..-....+..|..+|...|..++|....+.
T Consensus 261 tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~ 340 (639)
T KOG1130|consen 261 TLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAEL 340 (639)
T ss_pred HHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 5432 21 123345666777777777888888777654332 1122455777888888888888888776655
Q ss_pred HH
Q 047932 312 ME 313 (598)
Q Consensus 312 ~~ 313 (598)
-.
T Consensus 341 hl 342 (639)
T KOG1130|consen 341 HL 342 (639)
T ss_pred HH
Confidence 43
No 194
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.35 E-value=0.00076 Score=47.00 Aligned_cols=53 Identities=21% Similarity=0.230 Sum_probs=36.0
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 047932 151 CRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDE 210 (598)
Q Consensus 151 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 210 (598)
.+.|++++|+++|+.+.... |.+...+..++.+|.+.|++++|.++++.+...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN-------PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT-------TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45677777777777777664 446666667777777777777777777777664
No 195
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.34 E-value=0.017 Score=51.87 Aligned_cols=100 Identities=15% Similarity=0.122 Sum_probs=61.8
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcC---CHHHHHHHHHHHhhCCCCC
Q 047932 138 PDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEG---FVDKAMELFLQMKDENINP 214 (598)
Q Consensus 138 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~~~~~ 214 (598)
.|...|-.|..+|...|++..|...|.+..+.. +++...+..+..++.... ...++.++|+++...+..
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-------g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~- 225 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALRLA-------GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA- 225 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-
Confidence 366667777777777777777777777766654 455555555555544332 244666666666665322
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047932 215 NVVTYNSLIHCFSHADDWNEAKRLFIKMMDQ 245 (598)
Q Consensus 215 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 245 (598)
|+.+...|...+...|++.+|...|+.|++.
T Consensus 226 ~iral~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 226 NIRALSLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred cHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 5555566666666667777777776666665
No 196
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.34 E-value=0.03 Score=49.21 Aligned_cols=61 Identities=21% Similarity=0.146 Sum_probs=50.2
Q ss_pred CcccccCCChHHHHHHHHHHHHcCCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 047932 46 GQGDINLITPNEALCIFDYMLRMHPSP-PPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGL 106 (598)
Q Consensus 46 ~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 106 (598)
|...++.|++++|...|+.+...+|.. -...+..-++.++.+.+++++|+..+++.+..-.
T Consensus 41 g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP 102 (254)
T COG4105 41 GLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYP 102 (254)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC
Confidence 344678999999999999999998873 3455677778888899999999999999887743
No 197
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.32 E-value=0.074 Score=52.59 Aligned_cols=56 Identities=18% Similarity=0.052 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccC
Q 047932 286 TFVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPK 350 (598)
Q Consensus 286 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 350 (598)
..+...+..-+.+...+..|.++|..|-.. ..++..+...++|++|..+-++..+.
T Consensus 747 re~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~ 802 (1081)
T KOG1538|consen 747 REPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEF 802 (1081)
T ss_pred hhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccc
Confidence 334444445555666777778888776532 34567777888888888887776553
No 198
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.29 E-value=0.051 Score=47.64 Aligned_cols=64 Identities=13% Similarity=0.089 Sum_probs=38.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 047932 143 YNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDE 210 (598)
Q Consensus 143 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 210 (598)
+-..+..+...|++.+|...|+.+....+. .+--......++.++.+.|+++.|...+++....
T Consensus 8 lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~----s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 8 LYQKALEALQQGDYEEAIKLFEKLIDRYPN----SPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH-TT----STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCC----ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 334455566777788888888777765421 0112344556667777777777777777776654
No 199
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.29 E-value=0.016 Score=45.17 Aligned_cols=89 Identities=17% Similarity=0.100 Sum_probs=46.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHH
Q 047932 398 IDGLCKNGFVLEALELFCAIGNSKYELD--IISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPN----VVTYNIMIHGL 471 (598)
Q Consensus 398 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~ 471 (598)
..++-..|+.++|+.+|++....|.... ...+..+...+...|++++|..++++..... |+ ......+..++
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHH
Confidence 3445555666666666666665543322 2344455566666666666666666665431 22 11111223344
Q ss_pred HhcCCHHHHHHHHHHHH
Q 047932 472 CNDGQMDKAHDLFLDME 488 (598)
Q Consensus 472 ~~~g~~~~A~~~~~~~~ 488 (598)
...|+.++|++.+-...
T Consensus 86 ~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHCCCHHHHHHHHHHHH
Confidence 55666666666665544
No 200
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.27 E-value=0.00074 Score=47.22 Aligned_cols=63 Identities=17% Similarity=0.120 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHH
Q 047932 426 IISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDG-QMDKAHDLFLDMEA 489 (598)
Q Consensus 426 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~ 489 (598)
..+|..+...+...|++++|+..|++.++.+ +.+...|..+..++...| ++++|++.+++.++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 4455555555555666666666666555532 113445555555555555 45566655555544
No 201
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.25 E-value=0.0012 Score=46.19 Aligned_cols=63 Identities=17% Similarity=0.134 Sum_probs=39.2
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcC-CHHHHHHHHHHHhh
Q 047932 140 VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEG-FVDKAMELFLQMKD 209 (598)
Q Consensus 140 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~ 209 (598)
..+|..++..+...|++++|+..|++..+.+ +.+...|..+..++...| ++++|++.++...+
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-------p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-------PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-------TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-------CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 4456666666666666666666666666654 344556666666666666 56666666666554
No 202
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.23 E-value=0.0013 Score=46.61 Aligned_cols=61 Identities=20% Similarity=0.184 Sum_probs=54.1
Q ss_pred ccccCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHh
Q 047932 48 GDINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYT 112 (598)
Q Consensus 48 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 112 (598)
.+.+.+++++|.++++.++..+|. ++..|...+..+.+.|++++|...|+++++. .|+...
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~--~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~--~p~~~~ 64 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPD--DPELWLQRARCLFQLGRYEEALEDLERALEL--SPDDPD 64 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcc--cchhhHHHHHHHHHhccHHHHHHHHHHHHHH--CCCcHH
Confidence 456889999999999999999987 8999999999999999999999999999977 455443
No 203
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.21 E-value=0.21 Score=47.50 Aligned_cols=441 Identities=13% Similarity=0.121 Sum_probs=234.9
Q ss_pred cccccCCChHHHHHHHHHHHHcCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCCCHHhHHHHHhc--
Q 047932 47 QGDINLITPNEALCIFDYMLRMHPSPPP----VSSFNILFGCLAKNKHYDTVLSLFKRLNST-GLFPDLYTHSILINC-- 119 (598)
Q Consensus 47 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~ll~~-- 119 (598)
-.+.+++++.+|.++|.++...-...|. -...+.++++|..+ +.+..........+. |..+-...+..+...
T Consensus 14 f~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~ 92 (549)
T PF07079_consen 14 FILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQ 92 (549)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHh
Confidence 3456889999999999998765433111 12244667777643 444444444333332 323434444444443
Q ss_pred -cHHHHHHHHHHHHHc--CCCC------------CHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHH
Q 047932 120 -RIMEAAALFTKLRVF--GCEP------------DVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTY 184 (598)
Q Consensus 120 -~~~~a~~~~~~~~~~--~~~~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (598)
.+..|++.+...... +..+ |...-+..+..+...|++.+++.+++++...--. -.+.-+..+|
T Consensus 93 k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llk--rE~~w~~d~y 170 (549)
T PF07079_consen 93 KEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLK--RECEWNSDMY 170 (549)
T ss_pred hhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhh--hhhcccHHHH
Confidence 677777776655443 2121 1122245677888999999999999988765300 0023678888
Q ss_pred HHHHHHHHhcC--------C-------HHHHHHHHHHHhhC------CCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHH
Q 047932 185 NTIIDGVCKEG--------F-------VDKAMELFLQMKDE------NINPNVVTYNSLIHCFSH--ADDWNEAKRLFIK 241 (598)
Q Consensus 185 ~~li~~~~~~g--------~-------~~~A~~~~~~~~~~------~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~ 241 (598)
+.++-.+++.= . ++.+.-...+|... .+-|.......++....- .....--.++++.
T Consensus 171 d~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~ 250 (549)
T PF07079_consen 171 DRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILEN 250 (549)
T ss_pred HHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHH
Confidence 88665554421 1 11122222222211 122222222222222211 1122222333333
Q ss_pred HHHCCCCCCHh-hHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC----cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 047932 242 MMDQGVHPNVV-TFSVIVDELCKNGKMEEASRLLDLMIQIGVH----PNTFVYNTLMDGFCLTGRVNHAKELFVSMESNG 316 (598)
Q Consensus 242 ~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 316 (598)
....-+.|+.. ....+...+.+ +.+++..+-+.+....+. .-..++..++....+.++...|.+.+.-+....
T Consensus 251 We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ld 328 (549)
T PF07079_consen 251 WENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILD 328 (549)
T ss_pred HHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcC
Confidence 33333455533 22233333333 455555555444433211 123467788888889999999999888776653
Q ss_pred CCCChhhH-------HHHHHHHHh----cCCHHHHHHHHHHHccCCCCCCHHHHHHHHH---HHHhcCC-HHHHHHHHHH
Q 047932 317 CMHDVVSY-------TTLINGYCK----TKNVEEALNLYRKMLPKGIRPTVVTYSTLFL---GLFEVHQ-VEHALKLFDE 381 (598)
Q Consensus 317 ~~~~~~~~-------~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~-~~~a~~~~~~ 381 (598)
|+...- ..+-+..+. .-+...-+.+|......++. .......++. -+=+.|. -++|+.+++.
T Consensus 329 --p~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiD-rqQLvh~L~~~Ak~lW~~g~~dekalnLLk~ 405 (549)
T PF07079_consen 329 --PRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDID-RQQLVHYLVFGAKHLWEIGQCDEKALNLLKL 405 (549)
T ss_pred --CcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccc-HHHHHHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence 222211 122223331 11233445555555544332 1112222222 2223444 8899999999
Q ss_pred HhhCCCCcCHHHHHHHH----HHHHH---cCCHHHHHHHHHHHhhCCCCCC----HHHHHHHHHH--HHHcCCHHHHHHH
Q 047932 382 MQHNDVAADTYIYNTFI----DGLCK---NGFVLEALELFCAIGNSKYELD----IISYSCLIDG--LCKIGKLETAWEL 448 (598)
Q Consensus 382 ~~~~~~~~~~~~~~~l~----~~~~~---~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~--~~~~g~~~~A~~~ 448 (598)
+.+.. +.|...-|.+. .+|.+ ...+.+-..+-+-+.+.|++|- ...-|.|..+ +..+|++.++.-.
T Consensus 406 il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~y 484 (549)
T PF07079_consen 406 ILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLY 484 (549)
T ss_pred HHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 88753 33443333322 22222 2233333444344445565543 3344555443 5578999999887
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 047932 449 FQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIM 503 (598)
Q Consensus 449 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 503 (598)
-..+.+ +.|++.+|..++-+.....++++|..++..+ ||+..++++-+
T Consensus 485 s~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L-----P~n~~~~dskv 532 (549)
T PF07079_consen 485 SSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL-----PPNERMRDSKV 532 (549)
T ss_pred HHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC-----CCchhhHHHHH
Confidence 777776 6899999999999999999999999999754 77777766543
No 204
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.15 E-value=0.23 Score=46.66 Aligned_cols=105 Identities=12% Similarity=0.091 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 047932 393 IYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLC 472 (598)
Q Consensus 393 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 472 (598)
+.+..+.-+...|+...|.++-.+.. .|+...|...+.+++..++|++..++... +-++.-|..++.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 44455666777888888887766654 46888888888888888888887776432 123466888888888
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccccch
Q 047932 473 NDGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFIRNNETSKSSR 517 (598)
Q Consensus 473 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 517 (598)
+.|+..+|..+..++ ++ ..-+..|.+.|++.+|.+
T Consensus 249 ~~~~~~eA~~yI~k~-----~~-----~~rv~~y~~~~~~~~A~~ 283 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI-----PD-----EERVEMYLKCGDYKEAAQ 283 (319)
T ss_pred HCCCHHHHHHHHHhC-----Ch-----HHHHHHHHHCCCHHHHHH
Confidence 888888888888762 21 345566788888888777
No 205
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.11 E-value=0.24 Score=46.18 Aligned_cols=119 Identities=8% Similarity=0.035 Sum_probs=57.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccC-CCCC-CHHHHHHHHHHHHhcCC
Q 047932 294 DGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPK-GIRP-TVVTYSTLFLGLFEVHQ 371 (598)
Q Consensus 294 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~ 371 (598)
.++.+.|+..++-.+++.+-+.. |.+..+. +..+.+.|+. ++.-+++.... ..+| +......+.++-...|+
T Consensus 271 ralf~d~~~rKg~~ilE~aWK~e--PHP~ia~--lY~~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e 344 (531)
T COG3898 271 RALFRDGNLRKGSKILETAWKAE--PHPDIAL--LYVRARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGE 344 (531)
T ss_pred HHHHhccchhhhhhHHHHHHhcC--CChHHHH--HHHHhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccc
Confidence 55566666666666666665553 2222221 2223334432 22222211110 0112 34444555555566666
Q ss_pred HHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHH-cCCHHHHHHHHHHHhhC
Q 047932 372 VEHALKLFDEMQHNDVAADTYIYNTFIDGLCK-NGFVLEALELFCAIGNS 420 (598)
Q Consensus 372 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~ 420 (598)
+..|..--+...+. .|....|..|.+.-.. .|+-.++..++.+..+.
T Consensus 345 ~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 345 FSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred hHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 66666555554443 4555556555554433 36777777776666654
No 206
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.05 E-value=0.0074 Score=53.42 Aligned_cols=94 Identities=17% Similarity=0.133 Sum_probs=73.6
Q ss_pred cccCCChHHHHHHHHHHHHcCCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhccHHHHHHH
Q 047932 49 DINLITPNEALCIFDYMLRMHPSP-PPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCRIMEAAAL 127 (598)
Q Consensus 49 ~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~a~~~ 127 (598)
+++.|+|..|...|...++..|.. ..+.++..|...+..+|++++|...|..+.+. .|+.
T Consensus 151 ~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~--~P~s----------------- 211 (262)
T COG1729 151 LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKD--YPKS----------------- 211 (262)
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHh--CCCC-----------------
Confidence 456788888888888888888762 34557778888888888888888888888765 2321
Q ss_pred HHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 047932 128 FTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGN 170 (598)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 170 (598)
+.-...+..|..+..+.|+.++|..+|+++.++.
T Consensus 212 ---------~KApdallKlg~~~~~l~~~d~A~atl~qv~k~Y 245 (262)
T COG1729 212 ---------PKAPDALLKLGVSLGRLGNTDEACATLQQVIKRY 245 (262)
T ss_pred ---------CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHC
Confidence 2234677888899999999999999999999875
No 207
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.02 E-value=0.21 Score=43.89 Aligned_cols=132 Identities=8% Similarity=0.054 Sum_probs=81.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcCHHH-----HHHH
Q 047932 218 TYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFV-----YNTL 292 (598)
Q Consensus 218 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-----~~~l 292 (598)
+.+.++.++.-.|.+.-...++.++++...+.++.....+++.-.+.|+.+.|...|++..+..-..|... ....
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 44556666677777777778888877766566677777777777788888888888876655422222222 2223
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccC
Q 047932 293 MDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPK 350 (598)
Q Consensus 293 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 350 (598)
...|.-.+++..|...+.++...+ +.++...|.-.-+..-.|+...|++.++.|.+.
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 334455566666666666666543 334444444444444456677777777777665
No 208
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.99 E-value=0.012 Score=53.34 Aligned_cols=61 Identities=13% Similarity=0.054 Sum_probs=25.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCccccchhHHHHHHHh
Q 047932 464 YNIMIHGLCNDGQMDKAHDLFLDMEAKG--VEPDCVIFNTIMLGFIRNNETSKSSRGKLMSQMSS 526 (598)
Q Consensus 464 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 526 (598)
+..++.+|...|++++|+..|+.+++.- -+.....+..++.++...|+.++|.+ .++++++
T Consensus 183 ~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~--~~~~vi~ 245 (263)
T PRK10803 183 NYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKA--VYQQVIK 245 (263)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHH--HHHHHHH
Confidence 3344444444455555555554444321 01112333333444444444555544 4444443
No 209
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.96 E-value=0.024 Score=48.40 Aligned_cols=33 Identities=33% Similarity=0.360 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 047932 478 DKAHDLFLDMEAKGVEPDCVIFNTIMLGFIRNN 510 (598)
Q Consensus 478 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 510 (598)
+-|++++++|...|+-||..++..++..+.+.+
T Consensus 120 ~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 120 ECAIDLLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 456666666666666666666666666664444
No 210
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.89 E-value=0.2 Score=47.48 Aligned_cols=29 Identities=7% Similarity=-0.028 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHhcCCccccchhHHHHHHHhc
Q 047932 497 VIFNTIMLGFIRNNETSKSSRGKLMSQMSSC 527 (598)
Q Consensus 497 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 527 (598)
-.+..++.++.-.|+.++|.+ .+++|.+.
T Consensus 306 Wd~ATl~Ea~vL~~d~~ka~~--a~e~~~~l 334 (374)
T PF13281_consen 306 WDVATLLEASVLAGDYEKAIQ--AAEKAFKL 334 (374)
T ss_pred HHHHHHHHHHHHcCCHHHHHH--HHHHHhhc
Confidence 344566677777888888888 88887744
No 211
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.89 E-value=0.014 Score=49.68 Aligned_cols=104 Identities=20% Similarity=0.289 Sum_probs=59.2
Q ss_pred CCHhHHHHHHHHHHhc-----CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhh
Q 047932 179 PDTVTYNTIIDGVCKE-----GFVDKAMELFLQMKDENINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVT 253 (598)
Q Consensus 179 ~~~~~~~~li~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 253 (598)
.+-.+|..+++.+.+. |..+=....+..|.+-|+.-|..+|+.|++++=+ |.+- |.. .
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv---------------p~n-~ 107 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV---------------PRN-F 107 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc---------------ccc-H
Confidence 4566677777766643 5566666777778888888888888888877543 2211 000 0
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCC
Q 047932 254 FSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTLMDGFCLTGR 301 (598)
Q Consensus 254 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 301 (598)
+..+..-| -.+-+-|++++++|...|+.||..++..+++.+.+.+.
T Consensus 108 fQ~~F~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 108 FQAEFMHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHhccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 11111111 11234466666666666666666666666666655443
No 212
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.88 E-value=0.43 Score=45.41 Aligned_cols=131 Identities=20% Similarity=0.193 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC-CCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 047932 356 VVTYSTLFLGLFEVHQVEHALKLFDEMQHND-VAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLID 434 (598)
Q Consensus 356 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 434 (598)
..+|...+....+....+.|..+|-++.+.+ +.++..++++++..++ .|+..-|..+|+.-... ++.+..--+..+.
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~-f~d~~~y~~kyl~ 474 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK-FPDSTLYKEKYLL 474 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh-CCCchHHHHHHHH
Confidence 4556666666666666666777776666665 4455666666665443 45666666666654432 1222222344555
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047932 435 GLCKIGKLETAWELFQSLSRVGLLPN--VVTYNIMIHGLCNDGQMDKAHDLFLDMEA 489 (598)
Q Consensus 435 ~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 489 (598)
.+...++-+.|..+|+..... +..+ ...|..++.--..-|+...+..+=++|..
T Consensus 475 fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 475 FLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 566666666666666644332 1112 34566666666666666666666666655
No 213
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.87 E-value=0.024 Score=51.50 Aligned_cols=99 Identities=12% Similarity=0.054 Sum_probs=44.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC--CCCHHHHH
Q 047932 143 YNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENI--NPNVVTYN 220 (598)
Q Consensus 143 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~ 220 (598)
|...+..+.+.|++++|+..|+.+.+..++. .-....+.-+...|...|++++|...|+.+...-. +.....+.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s----~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDS----TYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCC----cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 3333333344555555555555555543100 00013444455555555555555555555554210 11222333
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC
Q 047932 221 SLIHCFSHADDWNEAKRLFIKMMDQ 245 (598)
Q Consensus 221 ~l~~~~~~~~~~~~a~~~~~~~~~~ 245 (598)
.+..++...|+.++|..+|+.+++.
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3444444555555555555555443
No 214
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.85 E-value=0.065 Score=44.16 Aligned_cols=72 Identities=19% Similarity=0.301 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHHH
Q 047932 428 SYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEA-----KGVEPDCVIFN 500 (598)
Q Consensus 428 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~~~ 500 (598)
+...++..+...|++++|..+++.+.... +-+...|..++.+|...|+..+|+++|+++.. .|++|+..+-.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 34556667778888888888888887753 33567788888888888888888888887753 37888876644
No 215
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.83 E-value=0.0019 Score=46.51 Aligned_cols=69 Identities=23% Similarity=0.296 Sum_probs=50.9
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 047932 140 VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPD-TVTYNTIIDGVCKEGFVDKAMELFLQMKD 209 (598)
Q Consensus 140 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 209 (598)
..+++.+...|...|++++|+..|++..+.....|. -.++ ..++..+...+...|++++|++.+++..+
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGD-DHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTT-HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 357889999999999999999999998764211111 1222 56778888888888999988888887654
No 216
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.81 E-value=0.19 Score=49.84 Aligned_cols=87 Identities=14% Similarity=0.121 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH---------
Q 047932 392 YIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVV--------- 462 (598)
Q Consensus 392 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~--------- 462 (598)
.+...+...+.+...+.-|-++|.+|-+. ..+++.....+++.+|..+.++..+ +.|++.
T Consensus 748 e~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe--~~~dVy~pyaqwLAE 816 (1081)
T KOG1538|consen 748 EPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPE--FKDDVYMPYAQWLAE 816 (1081)
T ss_pred hHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCcc--ccccccchHHHHhhh
Confidence 34444444445555555566666555422 2344555556666666666655544 233321
Q ss_pred --HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047932 463 --TYNIMIHGLCNDGQMDKAHDLFLDMEA 489 (598)
Q Consensus 463 --~~~~l~~~~~~~g~~~~A~~~~~~~~~ 489 (598)
-|...-.+|.++|+..+|..+++++..
T Consensus 817 ~DrFeEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 817 NDRFEEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred hhhHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 122223456667777777777777654
No 217
>PRK15331 chaperone protein SicA; Provisional
Probab=96.80 E-value=0.16 Score=41.66 Aligned_cols=90 Identities=11% Similarity=-0.088 Sum_probs=58.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 047932 398 IDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQM 477 (598)
Q Consensus 398 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 477 (598)
..-+...|++++|..+|+-+.-.+ .-+..-|..|..++-..+++++|+..|......+. -|...+.....++...|+.
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCH
Confidence 334456777777777777666544 23555666777777777777777777776655432 2344455566777777777
Q ss_pred HHHHHHHHHHHH
Q 047932 478 DKAHDLFLDMEA 489 (598)
Q Consensus 478 ~~A~~~~~~~~~ 489 (598)
+.|+..|+..+.
T Consensus 122 ~~A~~~f~~a~~ 133 (165)
T PRK15331 122 AKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHh
Confidence 777777777766
No 218
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.73 E-value=0.13 Score=46.19 Aligned_cols=139 Identities=17% Similarity=0.079 Sum_probs=88.5
Q ss_pred cccCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHH---HHHhc--cHHH
Q 047932 49 DINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHS---ILINC--RIME 123 (598)
Q Consensus 49 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~---~ll~~--~~~~ 123 (598)
+...|++.+|...|+.++...|. +..+-..++..|...|+.+.|..++..+....-........ .++.. ...+
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~~~--~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAAPE--NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhccchhhHHHHHHHHHHhCcc--cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 56899999999999999999887 77888999999999999999999999876542111111100 01100 1111
Q ss_pred HHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCC
Q 047932 124 AAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGF 196 (598)
Q Consensus 124 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 196 (598)
...+-.+.... +.|...-..+...+...|+.+.|.+.+-.+.+++.. -.|...-..++..+.-.|.
T Consensus 222 ~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~-----~~d~~~Rk~lle~f~~~g~ 287 (304)
T COG3118 222 IQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRG-----FEDGEARKTLLELFEAFGP 287 (304)
T ss_pred HHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc-----ccCcHHHHHHHHHHHhcCC
Confidence 12222222221 225566667777788888888888877777766521 2344555556655555553
No 219
>PRK15331 chaperone protein SicA; Provisional
Probab=96.73 E-value=0.14 Score=41.96 Aligned_cols=89 Identities=10% Similarity=-0.014 Sum_probs=63.0
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHH
Q 047932 364 LGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLE 443 (598)
Q Consensus 364 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 443 (598)
.-+...|++++|..+|.-+...+ +-+...+..|..++-..+++++|+..|......+ .-|+..+-....+|...|+.+
T Consensus 45 y~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 45 YEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHH
Confidence 33456788888888887777654 3456666777777777888888888887665443 234555556777888888888
Q ss_pred HHHHHHHHHHh
Q 047932 444 TAWELFQSLSR 454 (598)
Q Consensus 444 ~A~~~~~~~~~ 454 (598)
.|...|+...+
T Consensus 123 ~A~~~f~~a~~ 133 (165)
T PRK15331 123 KARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHh
Confidence 88888887776
No 220
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.68 E-value=0.4 Score=42.21 Aligned_cols=132 Identities=15% Similarity=0.103 Sum_probs=78.4
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHH-----
Q 047932 253 TFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTL----- 327 (598)
Q Consensus 253 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l----- 327 (598)
..+.++.++.-.|.+.-....+.++++...+.++.....|++...+.||.+.|...|++..+..-..+..+.+.+
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 345566666777777777777777777665667777777777777788888887777766654323333333322
Q ss_pred HHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 047932 328 INGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFEVHQVEHALKLFDEMQHN 385 (598)
Q Consensus 328 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 385 (598)
...|.-++++..|...+.++...+.. +....+.-.-+..-.|+..+|.+.++.|...
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 22344455666666666665554322 3333343333444455666666666666554
No 221
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.64 E-value=0.67 Score=44.23 Aligned_cols=437 Identities=10% Similarity=0.071 Sum_probs=219.2
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhc-----cHHHHHHHHHHHHHcC
Q 047932 61 IFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINC-----RIMEAAALFTKLRVFG 135 (598)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~-----~~~~a~~~~~~~~~~~ 135 (598)
.++.-++.+|. +..+|..+++.+..+|.+++.++.++++...- .--+..|...+.. ++.....+|.+.+...
T Consensus 30 rLRerIkdNPt--nI~S~fqLiq~~~tq~s~~~~re~yeq~~~pf-p~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~ 106 (660)
T COG5107 30 RLRERIKDNPT--NILSYFQLIQYLETQESMDAEREMYEQLSSPF-PIMEHAWRLYMSGELARKDFRSVESLFGRCLKKS 106 (660)
T ss_pred HHHHHhhcCch--hHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCC-ccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhh
Confidence 34444566666 99999999999999999999999999998531 1123345555553 6777777887777653
Q ss_pred CCCCHhhHHHHHHHHHhcC-----Ch-hHHHHHHHHHHhcCCCCccccCC-CHhHHHHHHH---HHH------hcCCHHH
Q 047932 136 CEPDVFTYNTLINGLCRTG-----HT-IVALNLFEEMANGNGEFGVVCKP-DTVTYNTIID---GVC------KEGFVDK 199 (598)
Q Consensus 136 ~~~~~~~~~~l~~~~~~~g-----~~-~~A~~~~~~~~~~~~~~~~~~~~-~~~~~~~li~---~~~------~~g~~~~ 199 (598)
.+...|...+.--.+.+ +- ..-.+.|+-...-- . +.| ....|+..+. ..- .+.++|.
T Consensus 107 --l~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~-~----~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~ 179 (660)
T COG5107 107 --LNLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCA-I----FEPQSENYWDEYGLFLEYIEELGKWEEQQRIDK 179 (660)
T ss_pred --ccHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcc-c----ccccccchHHHHHHHHHhccccccHHHHHHHHH
Confidence 34566666655333332 11 11223333333210 0 112 2333433332 222 2334555
Q ss_pred HHHHHHHHhhCCCCCCHHHHH------HHHHHHH---hcC----CHHHHHHHHHHHHH--CCCC--------------C-
Q 047932 200 AMELFLQMKDENINPNVVTYN------SLIHCFS---HAD----DWNEAKRLFIKMMD--QGVH--------------P- 249 (598)
Q Consensus 200 A~~~~~~~~~~~~~~~~~~~~------~l~~~~~---~~~----~~~~a~~~~~~~~~--~~~~--------------~- 249 (598)
....+.+|....+..=...|+ .=+.-.. -.| -+-.|...++++.. .|.. .
T Consensus 180 iR~~Y~ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~ 259 (660)
T COG5107 180 IRNGYMRALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAART 259 (660)
T ss_pred HHHHHHHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhcccccc
Confidence 566666666532110011111 1111000 011 13345555554432 1211 0
Q ss_pred CHhhHHHHHHHHHhC-----CC-HH-HHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChh
Q 047932 250 NVVTFSVIVDELCKN-----GK-ME-EASRLLDLMIQIGVHPNTFVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVV 322 (598)
Q Consensus 250 ~~~~~~~l~~~~~~~-----g~-~~-~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 322 (598)
...-|...|..-... |+ .. ..--++++.... +.-....|.---.-+...++-+.|......-... .+.
T Consensus 260 s~S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~----sps 334 (660)
T COG5107 260 SDSNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKALKTVERGIEM----SPS 334 (660)
T ss_pred ccchhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccC----CCc
Confidence 011233333322211 11 11 222233443332 2223444444444455667777777665543332 222
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHHH---hcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHH
Q 047932 323 SYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLF---EVHQVEHALKLFDEMQHNDVAADTYIYNTFID 399 (598)
Q Consensus 323 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 399 (598)
.-..+...|.-.++.+.....|++..+. ...-...+.+-+ ..|+++.-.+++-.-. ..-..+|...++
T Consensus 335 L~~~lse~yel~nd~e~v~~~fdk~~q~-----L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~----~k~t~v~C~~~N 405 (660)
T COG5107 335 LTMFLSEYYELVNDEEAVYGCFDKCTQD-----LKRKYSMGESESASKVDNNFEYSKELLLKRI----NKLTFVFCVHLN 405 (660)
T ss_pred hheeHHHHHhhcccHHHHhhhHHHHHHH-----HHHHHhhhhhhhhccccCCccccHHHHHHHH----hhhhhHHHHHHH
Confidence 2223334444455555555555554321 000000111111 1233322222221111 123456666777
Q ss_pred HHHHcCCHHHHHHHHHHHhhCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCH
Q 047932 400 GLCKNGFVLEALELFCAIGNSK-YELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVV-TYNIMIHGLCNDGQM 477 (598)
Q Consensus 400 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~ 477 (598)
+..+....+.|..+|-++.+.+ ..+++.++++++..++ .|+...|..+|+--... .||.. --+-.+..+..-++-
T Consensus 406 ~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~fLi~inde 482 (660)
T COG5107 406 YVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLLFLIRINDE 482 (660)
T ss_pred HHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCcH
Confidence 7777777888888888887776 4566777777777554 46777788888765543 23433 334556666777888
Q ss_pred HHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCccccchhHHHHHHHhc
Q 047932 478 DKAHDLFLDMEAKGVEPD--CVIFNTIMLGFIRNNETSKSSRGKLMSQMSSC 527 (598)
Q Consensus 478 ~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 527 (598)
..|..+|+..+.+ +..+ ...|..++..-..-|+...+.. +=+.+...
T Consensus 483 ~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~s--Le~rf~e~ 531 (660)
T COG5107 483 ENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYS--LEERFREL 531 (660)
T ss_pred HHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHh--HHHHHHHH
Confidence 8888888866543 2223 4567777777777777777666 66666554
No 222
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.63 E-value=0.013 Score=41.33 Aligned_cols=56 Identities=13% Similarity=0.036 Sum_probs=35.9
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 047932 148 NGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDE 210 (598)
Q Consensus 148 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 210 (598)
.+|.+.++++.|.++++.+...+ |.+...|......+.+.|++++|.+.|+...+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-------p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-------PDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-------cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 45666666666666666666654 445566666666666666666666666666654
No 223
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.63 E-value=0.3 Score=42.47 Aligned_cols=206 Identities=13% Similarity=0.088 Sum_probs=102.6
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhccHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcC
Q 047932 75 VSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTG 154 (598)
Q Consensus 75 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 154 (598)
...|..-..+|....++++|...+.++.+. ...+...|+..- .++.|.-+..++.+. +--+..|+.....|..+|
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfhAAK--ayEqaamLake~~kl--sEvvdl~eKAs~lY~E~G 105 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFHAAK--AYEQAAMLAKELSKL--SEVVDLYEKASELYVECG 105 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHHHHH--HHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHhC
Confidence 344556666777778888888888877642 122222222111 456666666666654 112345677778888888
Q ss_pred ChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhC---C--CCCCHHHHHHHHHHHHhc
Q 047932 155 HTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDE---N--INPNVVTYNSLIHCFSHA 229 (598)
Q Consensus 155 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~--~~~~~~~~~~l~~~~~~~ 229 (598)
.++.|...+++.-+. .++.++++|+++|++.... + ...-...+....+.+.+.
T Consensus 106 spdtAAmaleKAak~----------------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl 163 (308)
T KOG1585|consen 106 SPDTAAMALEKAAKA----------------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRL 163 (308)
T ss_pred CcchHHHHHHHHHHH----------------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhh
Confidence 888887777766442 2334555666665554321 0 011122333344455555
Q ss_pred CCHHHHHHHHHHHHHCC----CCCCH-hhHHHHHHHHHhCCCHHHHHHHHHHHHhcC---CCcCHHHHHHHHHHHHhcCC
Q 047932 230 DDWNEAKRLFIKMMDQG----VHPNV-VTFSVIVDELCKNGKMEEASRLLDLMIQIG---VHPNTFVYNTLMDGFCLTGR 301 (598)
Q Consensus 230 ~~~~~a~~~~~~~~~~~----~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~ll~~~~~~g~ 301 (598)
..+++|-..+.+-.... --++. ..|...+-.+.-..++..|.+.++.--+.+ -.-+..+...|+.+| ..|+
T Consensus 164 ~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD 242 (308)
T KOG1585|consen 164 EKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGD 242 (308)
T ss_pred HHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCC
Confidence 55555554443322110 01111 122333334444455666666665544332 112333444444444 3455
Q ss_pred HHHHHHH
Q 047932 302 VNHAKEL 308 (598)
Q Consensus 302 ~~~a~~~ 308 (598)
.+++..+
T Consensus 243 ~E~~~kv 249 (308)
T KOG1585|consen 243 IEEIKKV 249 (308)
T ss_pred HHHHHHH
Confidence 5544443
No 224
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.61 E-value=0.012 Score=48.61 Aligned_cols=71 Identities=18% Similarity=0.281 Sum_probs=52.0
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhh-----CCCCCCH
Q 047932 142 TYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKD-----ENINPNV 216 (598)
Q Consensus 142 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~ 216 (598)
+...++..+...|+++.|..+.+.+...+ |-|...|..+|.+|...|+...|.+.|+.+.. .|+.|+.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-------P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~ 136 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-------PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSP 136 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-------TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----H
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-------CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCH
Confidence 45667778888999999999999998876 66788899999999999999999998887753 3777776
Q ss_pred HHH
Q 047932 217 VTY 219 (598)
Q Consensus 217 ~~~ 219 (598)
.+-
T Consensus 137 ~~~ 139 (146)
T PF03704_consen 137 ETR 139 (146)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 225
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.61 E-value=0.87 Score=45.28 Aligned_cols=185 Identities=12% Similarity=0.004 Sum_probs=106.9
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHH
Q 047932 320 DVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFID 399 (598)
Q Consensus 320 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 399 (598)
+..+|...+..-...|+++.+.-+|++..-. +..-...|-..+.-....|+.+-+..++....+..++..+.+-..-..
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence 4556777777777888888888888876542 111222333344444445888888777777666543333333222222
Q ss_pred HHHHcCCHHHHHHHHHHHhhCCCCCCHH-HHHHHHHHHHHcCCHHHHH---HHHHHHHhCCCCCCHHHHHHHH----H-H
Q 047932 400 GLCKNGFVLEALELFCAIGNSKYELDII-SYSCLIDGLCKIGKLETAW---ELFQSLSRVGLLPNVVTYNIMI----H-G 470 (598)
Q Consensus 400 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~---~~~~~~~~~~~~p~~~~~~~l~----~-~ 470 (598)
..-..|++..|..+++.+...- |+.. .-..-+....+.|..+.+. .++...... .-+......+. + .
T Consensus 375 f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~--~~~~~i~~~l~~~~~r~~ 450 (577)
T KOG1258|consen 375 FEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEG--KENNGILEKLYVKFARLR 450 (577)
T ss_pred HHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhccc--ccCcchhHHHHHHHHHHH
Confidence 3445678888888888887653 3432 2233345556677777776 333333221 11211122221 1 1
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 047932 471 LCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFIRNN 510 (598)
Q Consensus 471 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 510 (598)
+.-.++.+.|..++.++.+. ++++...|..++..+...+
T Consensus 451 ~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 451 YKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 23457888888888888875 4777777888777766554
No 226
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.60 E-value=1.1 Score=46.31 Aligned_cols=170 Identities=12% Similarity=0.095 Sum_probs=106.7
Q ss_pred cCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhc-cHHHHHHHHH
Q 047932 51 NLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINC-RIMEAAALFT 129 (598)
Q Consensus 51 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~-~~~~a~~~~~ 129 (598)
+..-++-|+.+-..- ..++. .-.......+..+.+.|++++|.+.|-+.+.. +.|. ......+.+ ++.+-..+++
T Consensus 346 kK~ly~~Ai~LAk~~-~~d~d-~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-~Vi~kfLdaq~IknLt~YLe 421 (933)
T KOG2114|consen 346 KKNLYKVAINLAKSQ-HLDED-TLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-EVIKKFLDAQRIKNLTSYLE 421 (933)
T ss_pred HhhhHHHHHHHHHhc-CCCHH-HHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-HHHHHhcCHHHHHHHHHHHH
Confidence 344455666554332 11111 12234556677778999999999999888753 2333 333333444 7777778888
Q ss_pred HHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 047932 130 KLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKD 209 (598)
Q Consensus 130 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 209 (598)
.+.+.|.. +...-..|+.+|.+.++.++-.+..+... .|. . ..-....+..+.+.+-.++|.-+-.....
T Consensus 422 ~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~-----~---~fd~e~al~Ilr~snyl~~a~~LA~k~~~ 491 (933)
T KOG2114|consen 422 ALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGE-----W---FFDVETALEILRKSNYLDEAELLATKFKK 491 (933)
T ss_pred HHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccc-----e---eeeHHHHHHHHHHhChHHHHHHHHHHhcc
Confidence 88887754 55566789999999999988777766554 220 1 11245567777778888888776655443
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047932 210 ENINPNVVTYNSLIHCFSHADDWNEAKRLFIKM 242 (598)
Q Consensus 210 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 242 (598)
+...... .+-..+++++|++.+..+
T Consensus 492 -----he~vl~i---lle~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 492 -----HEWVLDI---LLEDLHNYEEALRYISSL 516 (933)
T ss_pred -----CHHHHHH---HHHHhcCHHHHHHHHhcC
Confidence 2333332 344578899999888765
No 227
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.47 E-value=0.25 Score=44.97 Aligned_cols=158 Identities=12% Similarity=0.023 Sum_probs=108.5
Q ss_pred cccCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhccHHHHHHHH
Q 047932 49 DINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCRIMEAAALF 128 (598)
Q Consensus 49 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~a~~~~ 128 (598)
+-..|+..+|...++++++..|. +.-++.-.=.++.-+|+...-...+++++..- .+|...
T Consensus 113 ~~~~g~~h~a~~~wdklL~d~Pt--Dlla~kfsh~a~fy~G~~~~~k~ai~kIip~w-n~dlp~---------------- 173 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDDYPT--DLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW-NADLPC---------------- 173 (491)
T ss_pred hhccccccHHHHHHHHHHHhCch--hhhhhhhhhhHHHhccchhhhhhHHHHhcccc-CCCCcH----------------
Confidence 34578888888889999888886 88888888888888888888888888776431 121111
Q ss_pred HHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 047932 129 TKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMK 208 (598)
Q Consensus 129 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 208 (598)
-..+...+.-++...|-+++|.+.-++..+.+ +.|.....++...+-..|++.++.+...+-.
T Consensus 174 ----------~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN-------~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~te 236 (491)
T KOG2610|consen 174 ----------YSYVHGMYAFGLEECGIYDDAEKQADRALQIN-------RFDCWASHAKAHVLEMNGRHKEGKEFMYKTE 236 (491)
T ss_pred ----------HHHHHHHHHhhHHHhccchhHHHHHHhhccCC-------CcchHHHHHHHHHHHhcchhhhHHHHHHhcc
Confidence 11222334445667899999999999988877 6778888888888888999999888776544
Q ss_pred hCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047932 209 DENINP---NVVTYNSLIHCFSHADDWNEAKRLFIKM 242 (598)
Q Consensus 209 ~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 242 (598)
..--.- -..-|-...-.+...+.++.|+++|+.-
T Consensus 237 d~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~e 273 (491)
T KOG2610|consen 237 DDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDRE 273 (491)
T ss_pred cchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHHH
Confidence 320000 1112223344566678888888888753
No 228
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.45 E-value=0.88 Score=43.35 Aligned_cols=30 Identities=17% Similarity=0.194 Sum_probs=14.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 047932 425 DIISYSCLIDGLCKIGKLETAWELFQSLSR 454 (598)
Q Consensus 425 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 454 (598)
+.+-+.+++.++.-.|++++|.+.+++|..
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~ 333 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFK 333 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Confidence 334444445555555555555555555544
No 229
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.41 E-value=0.013 Score=41.95 Aligned_cols=61 Identities=16% Similarity=0.271 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCC-CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047932 428 SYSCLIDGLCKIGKLETAWELFQSLSRV----GLL-PN-VVTYNIMIHGLCNDGQMDKAHDLFLDME 488 (598)
Q Consensus 428 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~-p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 488 (598)
+++.+...|...|++++|+..|++..+. |.. |+ ..++..+..++...|++++|++++++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4445555555555555555555554321 100 11 2344555555555555555555555544
No 230
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.38 E-value=0.038 Score=43.98 Aligned_cols=119 Identities=10% Similarity=0.051 Sum_probs=63.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHH
Q 047932 431 CLIDGLCKIGKLETAWELFQSLSRVGLLP--NVVTYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPDC--VIFNTIMLGF 506 (598)
Q Consensus 431 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~ 506 (598)
.-.....+.|++++|.+.|+.+...-... ....-..++.+|.+.|++++|+..+++.++.. |+. .-|...+.++
T Consensus 15 ~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLh--P~hp~vdYa~Y~~gL 92 (142)
T PF13512_consen 15 QEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLH--PTHPNVDYAYYMRGL 92 (142)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCCCccHHHHHHHH
Confidence 33444556677777777777776531111 12344556667777777777777777777652 221 2233333333
Q ss_pred HhcCCccccchhHHHHHHHhcccCCCCCChHHHHHHHHHhCCCCCChhhHHHhhhcCccccchhh
Q 047932 507 IRNNETSKSSRGKLMSQMSSCWSMCFQPKTLICSISIMLQKDMSPGDTMFSTALLMDPDCSCDLE 571 (598)
Q Consensus 507 ~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~l~~~P~~~~~~~ 571 (598)
......+ . .+..+... .-|. +....|...|+.++...|++..+-+
T Consensus 93 ~~~~~~~---~--~~~~~~~~-----drD~----------~~~~~A~~~f~~lv~~yP~S~ya~d 137 (142)
T PF13512_consen 93 SYYEQDE---G--SLQSFFRS-----DRDP----------TPARQAFRDFEQLVRRYPNSEYAAD 137 (142)
T ss_pred HHHHHhh---h--HHhhhccc-----ccCc----------HHHHHHHHHHHHHHHHCcCChhHHH
Confidence 2222211 1 22222211 1111 1234677889999999999887654
No 231
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.09 E-value=0.93 Score=40.16 Aligned_cols=178 Identities=12% Similarity=0.075 Sum_probs=91.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhC
Q 047932 187 IIDGVCKEGFVDKAMELFLQMKDEN--INPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKN 264 (598)
Q Consensus 187 li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 264 (598)
=+..-.+.|++++|.+.|+.+.... -+-...+...++.++.+.++++.|+..+++.+..-......-|...+.+++..
T Consensus 40 ~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~ 119 (254)
T COG4105 40 EGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYF 119 (254)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHh
Confidence 3444567788888888888888652 12234456667777888888888888888887753222223344444444421
Q ss_pred -------CCHH---HHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc
Q 047932 265 -------GKME---EASRLLDLMIQIGVHPNTFVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKT 334 (598)
Q Consensus 265 -------g~~~---~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 334 (598)
.+.. .|..-|+.+++. -||+. =...|..-+..+... =...=..+.+.|.+.
T Consensus 120 ~~i~~~~rDq~~~~~A~~~f~~~i~r--yPnS~-------------Ya~dA~~~i~~~~d~----LA~~Em~IaryY~kr 180 (254)
T COG4105 120 FQIDDVTRDQSAARAAFAAFKELVQR--YPNSR-------------YAPDAKARIVKLNDA----LAGHEMAIARYYLKR 180 (254)
T ss_pred ccCCccccCHHHHHHHHHHHHHHHHH--CCCCc-------------chhhHHHHHHHHHHH----HHHHHHHHHHHHHHh
Confidence 1111 233333333332 11110 001111111111100 000112345667777
Q ss_pred CCHHHHHHHHHHHccCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 047932 335 KNVEEALNLYRKMLPKGIRPT---VVTYSTLFLGLFEVHQVEHALKLFDEMQH 384 (598)
Q Consensus 335 ~~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 384 (598)
|.+-.|..-++.|.+. .+-. ...+-.+..+|...|-.++|.+.-.-+..
T Consensus 181 ~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 181 GAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred cChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 7777777777777765 1111 23344555666666666666665544443
No 232
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.07 E-value=0.084 Score=50.78 Aligned_cols=66 Identities=14% Similarity=-0.066 Sum_probs=52.2
Q ss_pred CcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCC-H---HHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 047932 388 AADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELD-I---ISYSCLIDGLCKIGKLETAWELFQSLSRV 455 (598)
Q Consensus 388 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 455 (598)
+.+...++.+..+|.+.|++++|+..|++.+... |+ . .+|..+..+|...|++++|+..+++.++.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4457778888888888888888888888888764 33 2 35788888888888888888888888874
No 233
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=96.03 E-value=0.01 Score=34.23 Aligned_cols=32 Identities=13% Similarity=0.403 Sum_probs=29.4
Q ss_pred HHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 047932 62 FDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVL 95 (598)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 95 (598)
|+++++.+|. ++.+|+.++..|...|++++|+
T Consensus 2 y~kAie~~P~--n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPN--NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCC--CHHHHHHHHHHHHHCcCHHhhc
Confidence 6788888887 9999999999999999999986
No 234
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.01 E-value=0.059 Score=50.49 Aligned_cols=59 Identities=3% Similarity=-0.147 Sum_probs=33.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccccchhHHHHHHH
Q 047932 464 YNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFIRNNETSKSSRGKLMSQMS 525 (598)
Q Consensus 464 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 525 (598)
++.+..+|.+.+++..|++...+.+..+ ++|......-..+|...|+++.|+. .|+++.
T Consensus 260 ~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~--df~ka~ 318 (397)
T KOG0543|consen 260 HLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARD--DFQKAL 318 (397)
T ss_pred hhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHH--HHHHHH
Confidence 4445555555555555555555555554 4455555555555555555555555 555555
No 235
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.01 E-value=0.14 Score=40.45 Aligned_cols=86 Identities=14% Similarity=0.060 Sum_probs=46.4
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCC---------CCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 047932 139 DVFTYNTLINGLCRTGHTIVALNLFEEMANGNG---------EFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKD 209 (598)
Q Consensus 139 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---------~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 209 (598)
|..++.+++.++++.|+.+....+++..-..+. ..+....|+..+..+++.+|+.+|++..|+++.+...+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 456788899999999999998888876543221 01111234444444444444444444444444444433
Q ss_pred C-CCCCCHHHHHHHHH
Q 047932 210 E-NINPNVVTYNSLIH 224 (598)
Q Consensus 210 ~-~~~~~~~~~~~l~~ 224 (598)
. +++.+..+|..|+.
T Consensus 81 ~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 81 KYPIPIPKEFWRRLLE 96 (126)
T ss_pred HcCCCCCHHHHHHHHH
Confidence 2 33333444444443
No 236
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.99 E-value=0.25 Score=47.65 Aligned_cols=66 Identities=17% Similarity=-0.001 Sum_probs=53.4
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCH---hHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 047932 138 PDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDT---VTYNTIIDGVCKEGFVDKAMELFLQMKDE 210 (598)
Q Consensus 138 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 210 (598)
.+...++.+..+|.+.|++++|+..|++.++.+ +.+. .+|..+..+|...|+.++|++.+++..+.
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~-------Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELN-------PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-------CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 356678888999999999999999999988865 2223 35888899999999999999999888874
No 237
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.93 E-value=1 Score=39.32 Aligned_cols=85 Identities=16% Similarity=0.202 Sum_probs=37.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHH
Q 047932 218 TYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTLMDGFC 297 (598)
Q Consensus 218 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 297 (598)
.|.--..+|-..+++++|...+.+..+. ...+...|. .. ..++.|.-+.+++.+. .--...|+-....|.
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-AA------KayEqaamLake~~kl--sEvvdl~eKAs~lY~ 102 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-AA------KAYEQAAMLAKELSKL--SEVVDLYEKASELYV 102 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-HH------HHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHH
Confidence 3444445555666666666655555431 121221111 11 1233344444444332 112223444455566
Q ss_pred hcCCHHHHHHHHHHH
Q 047932 298 LTGRVNHAKELFVSM 312 (598)
Q Consensus 298 ~~g~~~~a~~~~~~~ 312 (598)
..|..+.|-..+++.
T Consensus 103 E~GspdtAAmaleKA 117 (308)
T KOG1585|consen 103 ECGSPDTAAMALEKA 117 (308)
T ss_pred HhCCcchHHHHHHHH
Confidence 666666555555544
No 238
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.92 E-value=0.25 Score=46.55 Aligned_cols=92 Identities=15% Similarity=0.163 Sum_probs=51.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhC-----CCCC---------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhh
Q 047932 188 IDGVCKEGFVDKAMELFLQMKDE-----NINP---------NVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVT 253 (598)
Q Consensus 188 i~~~~~~g~~~~A~~~~~~~~~~-----~~~~---------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 253 (598)
...|.+.|++..|...|++.... +.++ -..++..|.-+|.+.+++..|++..++.+..+ ++|...
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KA 293 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKA 293 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhH
Confidence 45678889999998888886542 1111 12234445555555555555555555555542 334444
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhc
Q 047932 254 FSVIVDELCKNGKMEEASRLLDLMIQI 280 (598)
Q Consensus 254 ~~~l~~~~~~~g~~~~a~~~~~~~~~~ 280 (598)
...-..++...|+++.|+..|+++++.
T Consensus 294 LyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 294 LYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 444455555555555555555555553
No 239
>PRK11906 transcriptional regulator; Provisional
Probab=95.91 E-value=0.83 Score=44.30 Aligned_cols=111 Identities=18% Similarity=0.101 Sum_probs=71.2
Q ss_pred ChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 047932 155 HTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTYNSLIHCFSHADDWNE 234 (598)
Q Consensus 155 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 234 (598)
+..+|.++-++..+.+ +.|......+..+..-.++++.|..+|++....+.. ...+|........-.|+.++
T Consensus 319 ~~~~a~~~A~rAveld-------~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~ 390 (458)
T PRK11906 319 AAQKALELLDYVSDIT-------TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEE 390 (458)
T ss_pred HHHHHHHHHHHHHhcC-------CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHH
Confidence 4456677777777766 667777777777777777788888888888775322 44566666666677888888
Q ss_pred HHHHHHHHHHCCCCCCH---hhHHHHHHHHHhCCCHHHHHHHHHH
Q 047932 235 AKRLFIKMMDQGVHPNV---VTFSVIVDELCKNGKMEEASRLLDL 276 (598)
Q Consensus 235 a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~ 276 (598)
|.+.+++..+. .|.. ......+..|+..+ ++.+++++-+
T Consensus 391 a~~~i~~alrL--sP~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 432 (458)
T PRK11906 391 ARICIDKSLQL--EPRRRKAVVIKECVDMYVPNP-LKNNIKLYYK 432 (458)
T ss_pred HHHHHHHHhcc--CchhhHHHHHHHHHHHHcCCc-hhhhHHHHhh
Confidence 88888886654 2322 22333334555443 5556665543
No 240
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.91 E-value=0.26 Score=38.90 Aligned_cols=53 Identities=13% Similarity=0.078 Sum_probs=37.4
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhc
Q 047932 457 LLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEAK-GVEPDCVIFNTIMLGFIRN 509 (598)
Q Consensus 457 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~ 509 (598)
..|+..+..+++.+|+..|++..|+++++...+. +++.+..+|..|+.-....
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~ 101 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVL 101 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 4567777777777777778888888777777654 6666677777777654433
No 241
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.88 E-value=0.069 Score=41.18 Aligned_cols=98 Identities=16% Similarity=0.037 Sum_probs=71.1
Q ss_pred cccccCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhccHHHHHH
Q 047932 47 QGDINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCRIMEAAA 126 (598)
Q Consensus 47 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~a~~ 126 (598)
..+...|+++.|++.|.+++..-|. ++.+||.-.+++.-+|+.++|++-+++.++..- +...+
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~--raSayNNRAQa~RLq~~~e~ALdDLn~AleLag-~~trt-------------- 113 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPE--RASAYNNRAQALRLQGDDEEALDDLNKALELAG-DQTRT-------------- 113 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhccc--chHhhccHHHHHHHcCChHHHHHHHHHHHHhcC-ccchH--------------
Confidence 3456789999999999999998887 889999999999999999999999998886521 11111
Q ss_pred HHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 047932 127 LFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEF 173 (598)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 173 (598)
-..+|..-...|...|+.+.|..=|+...+.|..|
T Consensus 114 ------------acqa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS~F 148 (175)
T KOG4555|consen 114 ------------ACQAFVQRGLLYRLLGNDDAARADFEAAAQLGSKF 148 (175)
T ss_pred ------------HHHHHHHHHHHHHHhCchHHHHHhHHHHHHhCCHH
Confidence 11223334455666777777777777766665443
No 242
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.83 E-value=0.12 Score=46.04 Aligned_cols=89 Identities=15% Similarity=0.109 Sum_probs=47.2
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CC-CCCHHHHHHHHHHHHhcCCc
Q 047932 437 CKIGKLETAWELFQSLSRVGLLP--NVVTYNIMIHGLCNDGQMDKAHDLFLDMEAK-GV-EPDCVIFNTIMLGFIRNNET 512 (598)
Q Consensus 437 ~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~ 512 (598)
.+.|++..|...|...++....- ....+..|..++...|+++.|..+|..+.+. +- +--++.+..|..+..+.|+.
T Consensus 152 ~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~ 231 (262)
T COG1729 152 YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNT 231 (262)
T ss_pred HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCH
Confidence 34455666666666655532110 1223334566666666666666666666543 11 11235555566666666666
Q ss_pred cccchhHHHHHHHhc
Q 047932 513 SKSSRGKLMSQMSSC 527 (598)
Q Consensus 513 ~~A~~~~~~~~~~~~ 527 (598)
++|.. .++++++.
T Consensus 232 d~A~a--tl~qv~k~ 244 (262)
T COG1729 232 DEACA--TLQQVIKR 244 (262)
T ss_pred HHHHH--HHHHHHHH
Confidence 66666 66666655
No 243
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.81 E-value=0.39 Score=48.21 Aligned_cols=98 Identities=15% Similarity=0.116 Sum_probs=43.3
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCCCHHHH
Q 047932 144 NTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCK----EGFVDKAMELFLQMKDENINPNVVTY 219 (598)
Q Consensus 144 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~ 219 (598)
..++....=.||-+.+++.+....+.++-.+....--.-.|..++..++. ....+.|.++++.+... -|+...|
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lf 269 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALF 269 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHH
Confidence 34445555567777777777766553321100000011123333332222 23345555555555543 2333333
Q ss_pred H-HHHHHHHhcCCHHHHHHHHHHHH
Q 047932 220 N-SLIHCFSHADDWNEAKRLFIKMM 243 (598)
Q Consensus 220 ~-~l~~~~~~~~~~~~a~~~~~~~~ 243 (598)
. .-.+.+...|++++|++.|++..
T Consensus 270 l~~~gR~~~~~g~~~~Ai~~~~~a~ 294 (468)
T PF10300_consen 270 LFFEGRLERLKGNLEEAIESFERAI 294 (468)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhc
Confidence 2 22334444555555555555433
No 244
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.79 E-value=0.93 Score=45.56 Aligned_cols=160 Identities=21% Similarity=0.128 Sum_probs=96.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHccCC-CCCCH------HHHHHHHHHHH----hcCCHHHHHHHHHHHhhCCCCcCHHH
Q 047932 325 TTLINGYCKTKNVEEALNLYRKMLPKG-IRPTV------VTYSTLFLGLF----EVHQVEHALKLFDEMQHNDVAADTYI 393 (598)
Q Consensus 325 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~------~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~ 393 (598)
..++....-.|+-+.+++.+....+.+ +. .+ ..|..++..+. ...+.+.|.+++..+.+. -|+...
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~-~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~l 268 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIR-SPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSAL 268 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcc-hHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHH
Confidence 344455555566666666666554431 11 11 11222222222 245678888888888876 344443
Q ss_pred H-HHHHHHHHHcCCHHHHHHHHHHHhhCC---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 047932 394 Y-NTFIDGLCKNGFVLEALELFCAIGNSK---YELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIH 469 (598)
Q Consensus 394 ~-~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 469 (598)
| ..-.+.+...|++++|++.|+...... .+.....+--++.++....++++|...|..+.+.. .-+..+|..+..
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a 347 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHH
Confidence 3 344566777899999999998765321 11233456667788888999999999999998853 223344444333
Q ss_pred -HHHhcCCH-------HHHHHHHHHHH
Q 047932 470 -GLCNDGQM-------DKAHDLFLDME 488 (598)
Q Consensus 470 -~~~~~g~~-------~~A~~~~~~~~ 488 (598)
++...|+. ++|.++|.+..
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 33467777 88888887764
No 245
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.79 E-value=2.1 Score=41.80 Aligned_cols=116 Identities=16% Similarity=0.152 Sum_probs=61.1
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhc----cHHHHHHHHHHHHHcCC------------------------CC
Q 047932 87 KNKHYDTVLSLFKRLNSTGLFPDLYTHSILINC----RIMEAAALFTKLRVFGC------------------------EP 138 (598)
Q Consensus 87 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~----~~~~a~~~~~~~~~~~~------------------------~~ 138 (598)
+..+++.-+++-+++++. .||-.+...++.. .+.++.+++++..+.|- .+
T Consensus 180 RERnp~aRIkaA~eALei--~pdCAdAYILLAEEeA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~ 257 (539)
T PF04184_consen 180 RERNPQARIKAAKEALEI--NPDCADAYILLAEEEASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNV 257 (539)
T ss_pred hcCCHHHHHHHHHHHHHh--hhhhhHHHhhcccccccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccch
Confidence 445555555566666543 4555555555554 46666666666554310 00
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 047932 139 DVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKD 209 (598)
Q Consensus 139 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 209 (598)
-..+-..+..++.+.|+.++|++.|+++.+..+ ...+......|+..+...+.+.++..++.+..+
T Consensus 258 ~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p-----~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 258 LVYAKRRLAMCARKLGRLREAIKMFRDLLKEFP-----NLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred hhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCC-----ccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 011223344555566666666666666655431 011233555666666666666666666666543
No 246
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.77 E-value=0.37 Score=47.57 Aligned_cols=99 Identities=21% Similarity=0.161 Sum_probs=44.3
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 047932 296 FCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFEVHQVEHA 375 (598)
Q Consensus 296 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 375 (598)
..+.|+++.|.++.++. .+...|..|.....++|+++-|.+.|.+... +..++-.|...|+.+..
T Consensus 328 Al~lg~L~~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L 392 (443)
T PF04053_consen 328 ALQLGNLDIALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKL 392 (443)
T ss_dssp HHHCT-HHHHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHH
T ss_pred HHhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHH
Confidence 34455555555443322 1344555555555555555555555554432 23333444455555555
Q ss_pred HHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 047932 376 LKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFC 415 (598)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 415 (598)
.++.+.....| -++....++...|+.+++.+++.
T Consensus 393 ~kl~~~a~~~~------~~n~af~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 393 SKLAKIAEERG------DINIAFQAALLLGDVEECVDLLI 426 (443)
T ss_dssp HHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHH
T ss_pred HHHHHHHHHcc------CHHHHHHHHHHcCCHHHHHHHHH
Confidence 55554444443 12223333344455555554443
No 247
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.71 E-value=1.5 Score=39.64 Aligned_cols=148 Identities=14% Similarity=0.113 Sum_probs=85.4
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 047932 148 NGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTYNSLIHCFS 227 (598)
Q Consensus 148 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 227 (598)
......|++..|..+|....... +.+...-..++.+|...|+.+.|..++..+...--.........-+..+.
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~-------~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~ 214 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAA-------PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLE 214 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhC-------cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHH
Confidence 44567788888888888877765 34456666778888888888888888887765421111112112233333
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CcCHHHHHHHHHHHHhcCCHHH
Q 047932 228 HADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGV-HPNTFVYNTLMDGFCLTGRVNH 304 (598)
Q Consensus 228 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~g~~~~ 304 (598)
+.....+...+-.+.-.. +-|...-..+...+...|+.+.|.+.+-.++..+. .-|...-..++..+...|..+.
T Consensus 215 qaa~~~~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp 290 (304)
T COG3118 215 QAAATPEIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADP 290 (304)
T ss_pred HHhcCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCH
Confidence 333333333333333321 22555555677777778888887776666655421 2244555566666655554333
No 248
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.69 E-value=0.14 Score=40.88 Aligned_cols=59 Identities=12% Similarity=0.017 Sum_probs=50.6
Q ss_pred ccccCCChHHHHHHHHHHHHcCCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 047932 48 GDINLITPNEALCIFDYMLRMHPSP-PPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGL 106 (598)
Q Consensus 48 ~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 106 (598)
..++.|++++|.+.|+.+....|.. -...+-..++.++.+++++++|+..+++.++...
T Consensus 19 ~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP 78 (142)
T PF13512_consen 19 EALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHP 78 (142)
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 3467899999999999999988873 3556778899999999999999999999998743
No 249
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.67 E-value=0.68 Score=45.02 Aligned_cols=65 Identities=17% Similarity=0.147 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047932 426 IISYSCLIDGLCKIGKLETAWELFQSLSRVGLLP-NVVTYNIMIHGLCNDGQMDKAHDLFLDMEAK 490 (598)
Q Consensus 426 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 490 (598)
..+-..+..++.+.|+.++|++.+++|.+..... +......|+.++...+.+.++..++.+--+.
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi 324 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDI 324 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccc
Confidence 3344567777778888888888888887642211 2335567888888888888888888876543
No 250
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.61 E-value=3.2 Score=42.59 Aligned_cols=342 Identities=13% Similarity=0.081 Sum_probs=170.5
Q ss_pred cCCCCCHhhHH-----HHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCH--HHHHHHHHH
Q 047932 134 FGCEPDVFTYN-----TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFV--DKAMELFLQ 206 (598)
Q Consensus 134 ~~~~~~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~--~~A~~~~~~ 206 (598)
.|++.+..-|. .++.-+...+.+..|+++-..+.... .. ....|......+.+..+. +++.+.+++
T Consensus 426 ~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~------~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~ 498 (829)
T KOG2280|consen 426 IGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPE------SQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDE 498 (829)
T ss_pred cCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcc------cc-ccHHHHHHHHHHHhccCccchHHHHHHHH
Confidence 35555554444 34666777788888888877765432 11 145666666666665321 222222222
Q ss_pred HhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC----CCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCC
Q 047932 207 MKDENINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVH----PNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGV 282 (598)
Q Consensus 207 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 282 (598)
=.+... -....|..+.+-....|+.+-|..+++.=...+.. .+..-+...+.-+...|+.+-...++-.+.+.-
T Consensus 499 kls~~~-~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~- 576 (829)
T KOG2280|consen 499 KLSAKL-TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL- 576 (829)
T ss_pred HhcccC-CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH-
Confidence 222111 24456777777777888888888777542211100 001112222333333444444333333333210
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH-ccC-CCCCCHHHHH
Q 047932 283 HPNTFVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKM-LPK-GIRPTVVTYS 360 (598)
Q Consensus 283 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~-~~~~~~~~~~ 360 (598)
+... .+....+...|..+|.+..+.. +. ..+-..|....+...+-.+.-+- ... -+.+-.....
T Consensus 577 --~~s~------l~~~l~~~p~a~~lY~~~~r~~---~~---~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk 642 (829)
T KOG2280|consen 577 --NRSS------LFMTLRNQPLALSLYRQFMRHQ---DR---ATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALK 642 (829)
T ss_pred --HHHH------HHHHHHhchhhhHHHHHHHHhh---ch---hhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHH
Confidence 1111 1111233445555555544421 11 11112222222222221111111 000 0111122222
Q ss_pred HHHHHHHhcCCH----------HHHHHHHHHHhh-CCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHH
Q 047932 361 TLFLGLFEVHQV----------EHALKLFDEMQH-NDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISY 429 (598)
Q Consensus 361 ~l~~~~~~~~~~----------~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 429 (598)
.....+.+.... .+-+.+.+.+.. .+..-...+.+--+.-+...|+..+|.++-.+.. -||-..|
T Consensus 643 ~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~ 718 (829)
T KOG2280|consen 643 TAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLW 718 (829)
T ss_pred HHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhH
Confidence 333344433321 112222222221 1222233344555566777888888888877665 4677788
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 047932 430 SCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFIRN 509 (598)
Q Consensus 430 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 509 (598)
-.-+.+++..+++++-+++-+.... +.-|...+.+|.+.|+.++|.+++-+... .. -...+|.+.
T Consensus 719 wLk~~aLa~~~kweeLekfAkskks------PIGy~PFVe~c~~~~n~~EA~KYiprv~~-----l~----ekv~ay~~~ 783 (829)
T KOG2280|consen 719 WLKLTALADIKKWEELEKFAKSKKS------PIGYLPFVEACLKQGNKDEAKKYIPRVGG-----LQ----EKVKAYLRV 783 (829)
T ss_pred HHHHHHHHhhhhHHHHHHHHhccCC------CCCchhHHHHHHhcccHHHHhhhhhccCC-----hH----HHHHHHHHh
Confidence 8888888888998887777665432 34566788889999999999988865532 11 456778888
Q ss_pred CCccccch
Q 047932 510 NETSKSSR 517 (598)
Q Consensus 510 g~~~~A~~ 517 (598)
|++.+|.+
T Consensus 784 ~~~~eAad 791 (829)
T KOG2280|consen 784 GDVKEAAD 791 (829)
T ss_pred ccHHHHHH
Confidence 88888777
No 251
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.54 E-value=1.1 Score=41.53 Aligned_cols=236 Identities=12% Similarity=0.040 Sum_probs=126.3
Q ss_pred cccCCChHHHHHHHHHHHHcCCC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhccHHHHHHH
Q 047932 49 DINLITPNEALCIFDYMLRMHPS-PPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCRIMEAAAL 127 (598)
Q Consensus 49 ~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~a~~~ 127 (598)
+..+.++++|+..+.+-+..-.+ -.....+..+..+..+.|.+++++..--..+ +-|.+.
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi-------------------~~a~~~ 76 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQI-------------------DTAREL 76 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHH-------------------HHHHHH
Confidence 45666777777777666543211 0123344555566666666665443322111 111111
Q ss_pred HHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047932 128 FTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQM 207 (598)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 207 (598)
-+.. .-..+|..+...+.+.-++.+++.+-..-....+.-.. ..-.....++..++.-.+.++++++.|+..
T Consensus 77 ~ds~------~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~--~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A 148 (518)
T KOG1941|consen 77 EDSD------FLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAG--QLGGQVSLSMGNAHLGLSVFQKALESFEKA 148 (518)
T ss_pred HHHH------HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcc--cccchhhhhHHHHhhhHHHHHHHHHHHHHH
Confidence 1111 12345667777777777777887776665544321000 011233445666777777888888888877
Q ss_pred hhCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCHh-hH-----HHHHHHHHhCCCHHHHHH
Q 047932 208 KDEN-----INPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQ----GVHPNVV-TF-----SVIVDELCKNGKMEEASR 272 (598)
Q Consensus 208 ~~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~-~~-----~~l~~~~~~~g~~~~a~~ 272 (598)
..-. ......++..|...|....|+++|.-+..+..+. ++. |.. -| ..+.-++...|....|.+
T Consensus 149 ~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~-d~~~kyr~~~lyhmaValR~~G~LgdA~e 227 (518)
T KOG1941|consen 149 LRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLK-DWSLKYRAMSLYHMAVALRLLGRLGDAME 227 (518)
T ss_pred HHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcC-chhHHHHHHHHHHHHHHHHHhcccccHHH
Confidence 6431 1112346788888888888888887766655432 211 111 11 223334556666666666
Q ss_pred HHHHHHh----cCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047932 273 LLDLMIQ----IGVHP-NTFVYNTLMDGFCLTGRVNHAKELFVSM 312 (598)
Q Consensus 273 ~~~~~~~----~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 312 (598)
.-++..+ .|-.+ .......+...|-..|+.+.|+.-|+..
T Consensus 228 ~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 228 CCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 5555433 33111 1223444556677777777776666654
No 252
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.51 E-value=1.1 Score=36.77 Aligned_cols=121 Identities=14% Similarity=0.084 Sum_probs=86.8
Q ss_pred ccCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHh--------ccH
Q 047932 50 INLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILIN--------CRI 121 (598)
Q Consensus 50 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~--------~~~ 121 (598)
.+.+..++|+..|..+.+.+-....+.+-..+.....+.|+...|+..|.++-.....|...--..-++ ..+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 567889999999999877554434555666777888899999999999999877654554431111111 166
Q ss_pred HHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 047932 122 MEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGN 170 (598)
Q Consensus 122 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 170 (598)
++.....+-+...+.+.....-..|.-+-.+.|++..|.+.|..+....
T Consensus 149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da 197 (221)
T COG4649 149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDA 197 (221)
T ss_pred HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccc
Confidence 6666666666554444445566788888899999999999999988744
No 253
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.51 E-value=0.46 Score=43.41 Aligned_cols=153 Identities=16% Similarity=0.087 Sum_probs=108.7
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHH----HHHHHHHHHHhcCCH
Q 047932 297 CLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVV----TYSTLFLGLFEVHQV 372 (598)
Q Consensus 297 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~ 372 (598)
...|+..+|-..++++.+. .|.|...+...-.+|...|+.+.-...++++... ..+|.. .-..+.-++...|-+
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 3467888888888888765 3678888888888899999999988889888765 223332 223344456678999
Q ss_pred HHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhC---CCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 047932 373 EHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNS---KYELDIISYSCLIDGLCKIGKLETAWELF 449 (598)
Q Consensus 373 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 449 (598)
++|++.-++..+.+ +.|.....+..+.+...|+..++.++..+-... +.-.-...|-...-.+...+.++.|+++|
T Consensus 192 ~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 192 DDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 99999998888875 567777778888888889999988877654321 10111223334445566678899999999
Q ss_pred HHH
Q 047932 450 QSL 452 (598)
Q Consensus 450 ~~~ 452 (598)
++-
T Consensus 271 D~e 273 (491)
T KOG2610|consen 271 DRE 273 (491)
T ss_pred HHH
Confidence 854
No 254
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=95.44 E-value=2.4 Score=40.01 Aligned_cols=79 Identities=16% Similarity=0.120 Sum_probs=34.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCH
Q 047932 328 INGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFV 407 (598)
Q Consensus 328 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 407 (598)
+.-+...|+...|.++-.+.. -|+..-|...+.+++..++|++...+... ..++.-|..++.+|.+.|+.
T Consensus 184 i~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~ 253 (319)
T PF04840_consen 184 IRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNK 253 (319)
T ss_pred HHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCH
Confidence 333444444444444443332 13444444555555555555544443211 11223444445555555555
Q ss_pred HHHHHHHHH
Q 047932 408 LEALELFCA 416 (598)
Q Consensus 408 ~~A~~~~~~ 416 (598)
.+|..+..+
T Consensus 254 ~eA~~yI~k 262 (319)
T PF04840_consen 254 KEASKYIPK 262 (319)
T ss_pred HHHHHHHHh
Confidence 555544444
No 255
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.42 E-value=0.67 Score=35.98 Aligned_cols=92 Identities=20% Similarity=0.116 Sum_probs=68.2
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh---hHHHHHHHHHhCC
Q 047932 189 DGVCKEGFVDKAMELFLQMKDENINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVV---TFSVIVDELCKNG 265 (598)
Q Consensus 189 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g 265 (598)
-++...|+.+.|++.|.+.... .+-....||.-..++--.|+.++|++-+++..+..-..+.. .|..-...|...|
T Consensus 51 valaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 4567788999999999888775 33477889999999888999999998888887652222222 3444455677788
Q ss_pred CHHHHHHHHHHHHhcC
Q 047932 266 KMEEASRLLDLMIQIG 281 (598)
Q Consensus 266 ~~~~a~~~~~~~~~~~ 281 (598)
+.+.|..-|+..-+.|
T Consensus 130 ~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLG 145 (175)
T ss_pred chHHHHHhHHHHHHhC
Confidence 8888888888887766
No 256
>PRK11906 transcriptional regulator; Provisional
Probab=95.36 E-value=2.3 Score=41.44 Aligned_cols=116 Identities=16% Similarity=0.032 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHccC-CCCCC-HHHHHHHHHHHHh---------cCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcC
Q 047932 337 VEEALNLYRKMLPK-GIRPT-VVTYSTLFLGLFE---------VHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNG 405 (598)
Q Consensus 337 ~~~A~~~~~~~~~~-~~~~~-~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 405 (598)
.+.|..+|.+.... ...|+ ...|..+..++.. ..+..+|.++-++..+.+ +.|+.....+..+....+
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhc
Confidence 46777788887721 22333 3444444433321 223445555556666654 456666666666666666
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 047932 406 FVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSR 454 (598)
Q Consensus 406 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 454 (598)
+++.|..+|++....+ +....+|......+...|+.++|.+.+++..+
T Consensus 353 ~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr 400 (458)
T PRK11906 353 QAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICIDKSLQ 400 (458)
T ss_pred chhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 6777777777666553 22344555555556666777777777776655
No 257
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.24 E-value=0.5 Score=46.72 Aligned_cols=130 Identities=18% Similarity=0.207 Sum_probs=64.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 047932 143 YNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTYNSL 222 (598)
Q Consensus 143 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 222 (598)
.+.++..+.+.|..+.|+++-.. +. .-.....+.|+++.|.++.++. .+...|..|
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~D---------------~~---~rFeLAl~lg~L~~A~~~a~~~------~~~~~W~~L 353 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVTD---------------PD---HRFELALQLGNLDIALEIAKEL------DDPEKWKQL 353 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS----------------HH---HHHHHHHHCT-HHHHHHHCCCC------STHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHhhcCC---------------hH---HHhHHHHhcCCHHHHHHHHHhc------CcHHHHHHH
Confidence 45566666666666666555222 11 1223444566666665544322 245566666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCH
Q 047932 223 IHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTLMDGFCLTGRV 302 (598)
Q Consensus 223 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 302 (598)
.......|+++-|++.|.+... +..|+-.|...|+.+...++.+.....| -++....++.-.|+.
T Consensus 354 g~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~------~~n~af~~~~~lgd~ 418 (443)
T PF04053_consen 354 GDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG------DINIAFQAALLLGDV 418 (443)
T ss_dssp HHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-H
T ss_pred HHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc------CHHHHHHHHHHcCCH
Confidence 6666666666666666655321 3445555566666655555555554443 123333334444555
Q ss_pred HHHHHHHHH
Q 047932 303 NHAKELFVS 311 (598)
Q Consensus 303 ~~a~~~~~~ 311 (598)
++..+++.+
T Consensus 419 ~~cv~lL~~ 427 (443)
T PF04053_consen 419 EECVDLLIE 427 (443)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555443
No 258
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.00 E-value=0.087 Score=32.55 Aligned_cols=38 Identities=18% Similarity=0.162 Sum_probs=19.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 047932 464 YNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTI 502 (598)
Q Consensus 464 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 502 (598)
+..+...|.+.|++++|+++|+++++.. |-|...+..+
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~-P~~~~a~~~L 41 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALALD-PDDPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCCHHHHHHh
Confidence 4445555555555555555555555543 3344444333
No 259
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.87 E-value=5.9 Score=41.40 Aligned_cols=148 Identities=14% Similarity=0.112 Sum_probs=88.5
Q ss_pred HHHHHhhccCCcccccCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHH
Q 047932 36 KFLKERSKSSGQGDINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSI 115 (598)
Q Consensus 36 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 115 (598)
..+......||..+.+.|++++|...|-+.+..-.. ..++.-|.......+.-.+++.+.+.|+.-...+ ..
T Consensus 365 d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~-------s~Vi~kfLdaq~IknLt~YLe~L~~~gla~~dht-tl 436 (933)
T KOG2114|consen 365 DTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEP-------SEVIKKFLDAQRIKNLTSYLEALHKKGLANSDHT-TL 436 (933)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCCh-------HHHHHHhcCHHHHHHHHHHHHHHHHcccccchhH-HH
Confidence 356777778999999999999999999887643211 1345556666677777888888888886544333 23
Q ss_pred HHhc-----cHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHH
Q 047932 116 LINC-----RIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDG 190 (598)
Q Consensus 116 ll~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ 190 (598)
++.+ +.+.-.+..+... .|. -..-....+..+.+.+-.++|.-+-.+... +.+....++
T Consensus 437 LLncYiKlkd~~kL~efI~~~~-~g~--~~fd~e~al~Ilr~snyl~~a~~LA~k~~~-----------he~vl~ill-- 500 (933)
T KOG2114|consen 437 LLNCYIKLKDVEKLTEFISKCD-KGE--WFFDVETALEILRKSNYLDEAELLATKFKK-----------HEWVLDILL-- 500 (933)
T ss_pred HHHHHHHhcchHHHHHHHhcCC-Ccc--eeeeHHHHHHHHHHhChHHHHHHHHHHhcc-----------CHHHHHHHH--
Confidence 3333 3333222222221 110 011244566667677777777655444322 244444333
Q ss_pred HHhcCCHHHHHHHHHHHh
Q 047932 191 VCKEGFVDKAMELFLQMK 208 (598)
Q Consensus 191 ~~~~g~~~~A~~~~~~~~ 208 (598)
-..+++++|++.+..+.
T Consensus 501 -e~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 501 -EDLHNYEEALRYISSLP 517 (933)
T ss_pred -HHhcCHHHHHHHHhcCC
Confidence 34688999999887764
No 260
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=94.86 E-value=0.095 Score=32.38 Aligned_cols=41 Identities=15% Similarity=0.156 Sum_probs=34.4
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHH
Q 047932 141 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTII 188 (598)
Q Consensus 141 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li 188 (598)
.++..+...|.+.|++++|.++|+++++.. |.|...|..+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~-------P~~~~a~~~La 42 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALD-------PDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-------cCCHHHHHHhh
Confidence 357788999999999999999999999986 56677776654
No 261
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=94.86 E-value=2.3 Score=36.56 Aligned_cols=85 Identities=16% Similarity=0.006 Sum_probs=60.0
Q ss_pred cccCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhc----cHHHH
Q 047932 49 DINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINC----RIMEA 124 (598)
Q Consensus 49 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~----~~~~a 124 (598)
+-..|-.+-|+--|.+.+...|. -+..||.+.-.+...|+++.|.+.|+...+....-+-...+.-|+. ++.-|
T Consensus 75 YDSlGL~~LAR~DftQaLai~P~--m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LA 152 (297)
T COG4785 75 YDSLGLRALARNDFSQALAIRPD--MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLA 152 (297)
T ss_pred hhhhhHHHHHhhhhhhhhhcCCC--cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhh
Confidence 33566677788888888888886 7889999999999999999999999999876432222222333332 66777
Q ss_pred HHHHHHHHHcC
Q 047932 125 AALFTKLRVFG 135 (598)
Q Consensus 125 ~~~~~~~~~~~ 135 (598)
.+-+...-+.+
T Consensus 153 q~d~~~fYQ~D 163 (297)
T COG4785 153 QDDLLAFYQDD 163 (297)
T ss_pred HHHHHHHHhcC
Confidence 66666655543
No 262
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.85 E-value=5.5 Score=40.99 Aligned_cols=368 Identities=14% Similarity=0.115 Sum_probs=195.1
Q ss_pred ccCCcccccCCChHHHHHHHHHHHHcCCC-------CCCHHH-----HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH
Q 047932 43 KSSGQGDINLITPNEALCIFDYMLRMHPS-------PPPVSS-----FNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDL 110 (598)
Q Consensus 43 ~~~~~~~~~~g~~~~A~~~~~~~~~~~~~-------~~~~~~-----~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 110 (598)
.++|-..++..++++-..+.+...-.+-. |-...- -..+++-+...+.|..|+++-.-+...-... .
T Consensus 393 AsfGk~~l~~~~~d~~~~v~~~lrVln~~r~~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~ 471 (829)
T KOG2280|consen 393 ASFGKASLRTPNPDEYMRVCRELRVLNALRDVRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-D 471 (829)
T ss_pred HhhcccccccCChHHHHHHHHHHHHHhhhcccccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-c
Confidence 34677777888888777666554321111 112222 2356777788888999988887765321111 2
Q ss_pred HhHHHHHhc-------cHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhH
Q 047932 111 YTHSILINC-------RIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVT 183 (598)
Q Consensus 111 ~~~~~ll~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 183 (598)
..+...... .-+++++..++=.+.-. .+..+|..+.......|+++.|..+++.=...+.. +..-.+...
T Consensus 472 ~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~-~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~q--V~lLL~m~~ 548 (829)
T KOG2280|consen 472 RVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL-TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQ--VPLLLKMKD 548 (829)
T ss_pred HHHHHHHHHHHhccCccchHHHHHHHHHhcccC-CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccch--hHHHhccch
Confidence 222222221 22333333332222111 34556788888888899999998887643222100 000112223
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh
Q 047932 184 YNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCK 263 (598)
Q Consensus 184 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 263 (598)
+..-+.-+.+.|+.+-...++-.+... .+...+... ..+...|..+|....+.. +..+ +-..|..
T Consensus 549 ~~~AL~kaies~d~~Li~~Vllhlk~~---~~~s~l~~~------l~~~p~a~~lY~~~~r~~---~~~~---l~d~y~q 613 (829)
T KOG2280|consen 549 SSLALKKAIESGDTDLIIQVLLHLKNK---LNRSSLFMT------LRNQPLALSLYRQFMRHQ---DRAT---LYDFYNQ 613 (829)
T ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHH---HHHHHHHHH------HHhchhhhHHHHHHHHhh---chhh---hhhhhhc
Confidence 444555666677777777666666543 122222222 223445666666665531 1111 1122222
Q ss_pred CCCHHHHHHH-HHHHH----hcCCCcCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHC-CCCCChhhHHHH
Q 047932 264 NGKMEEASRL-LDLMI----QIGVHPNTFVYNTLMDGFCLTGR----------VNHAKELFVSMESN-GCMHDVVSYTTL 327 (598)
Q Consensus 264 ~g~~~~a~~~-~~~~~----~~~~~~~~~~~~~ll~~~~~~g~----------~~~a~~~~~~~~~~-~~~~~~~~~~~l 327 (598)
..+...+-.+ ++... ..|..|+. ......+.+... ..+-..+.+.+... +......+.+--
T Consensus 614 ~dn~~~~a~~~~q~~~~~~~~~~r~~~l---k~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dT 690 (829)
T KOG2280|consen 614 DDNHQALASFHLQASYAAETIEGRIPAL---KTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDT 690 (829)
T ss_pred ccchhhhhhhhhhhhhhhhhhcccchhH---HHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHH
Confidence 2222221111 11100 11222222 223333333322 11122222222221 222333445555
Q ss_pred HHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCH
Q 047932 328 INGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFV 407 (598)
Q Consensus 328 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 407 (598)
+..+...|+..+|.++-.+.+- ||...|-.-+.+++..+++++..++-+... .+.-|.-++.+|.+.|+.
T Consensus 691 v~~li~~g~~k~a~ql~~~Fki----pdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~ 760 (829)
T KOG2280|consen 691 VTTLILIGQNKRAEQLKSDFKI----PDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNK 760 (829)
T ss_pred HHHHHHccchHHHHHHHHhcCC----cchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccH
Confidence 6667788888999888877753 577778788888888888887766654443 234566678889999999
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 047932 408 LEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQS 451 (598)
Q Consensus 408 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 451 (598)
++|..++.+.... . ....+|.+.|++.+|.++--+
T Consensus 761 ~EA~KYiprv~~l-----~----ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 761 DEAKKYIPRVGGL-----Q----EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HHHhhhhhccCCh-----H----HHHHHHHHhccHHHHHHHHHH
Confidence 9999988776532 2 356778888888888776543
No 263
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.82 E-value=2.8 Score=37.42 Aligned_cols=199 Identities=22% Similarity=0.095 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHH-
Q 047932 287 FVYNTLMDGFCLTGRVNHAKELFVSMESN-GCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFL- 364 (598)
Q Consensus 287 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~- 364 (598)
.........+...+++..+...+...... ........+......+...+++..+.+.+.........+ .........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHH
Confidence 34444444455555555555555544431 112233444444444555555555555555555432221 111111111
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCC--CcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCC
Q 047932 365 GLFEVHQVEHALKLFDEMQHNDV--AADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYEL-DIISYSCLIDGLCKIGK 441 (598)
Q Consensus 365 ~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~ 441 (598)
.+...++++.+...+.+...... ......+......+...++.+.+...+....... .. ....+..+...+...++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLN-PDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC-cccchHHHHHhhHHHHHccc
Confidence 44555555555555555533110 0112222222223444555555555555555432 11 23444455555555555
Q ss_pred HHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047932 442 LETAWELFQSLSRVGLLPN-VVTYNIMIHGLCNDGQMDKAHDLFLDMEA 489 (598)
Q Consensus 442 ~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 489 (598)
++.+...+...... .|+ ...+..+...+...|..+.+...+.+...
T Consensus 218 ~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 218 YEEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred HHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55555555555542 222 22233333333344445555555555544
No 264
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.81 E-value=2.8 Score=37.41 Aligned_cols=224 Identities=17% Similarity=0.056 Sum_probs=152.9
Q ss_pred cCCHHHHHHHHHHHHHCCCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHccC-CCCCCHHHHHHHHHHHHhcCCHHHHH
Q 047932 299 TGRVNHAKELFVSMESNGCM-HDVVSYTTLINGYCKTKNVEEALNLYRKMLPK-GIRPTVVTYSTLFLGLFEVHQVEHAL 376 (598)
Q Consensus 299 ~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~ 376 (598)
.+....+...+......... .....+......+...+.+..+...+...... ........+......+...+++..+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 34555555566555554311 13466777778888899999999888887652 22335566667777777888899999
Q ss_pred HHHHHHhhCCCCcCHHHHHHHHH-HHHHcCCHHHHHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 047932 377 KLFDEMQHNDVAADTYIYNTFID-GLCKNGFVLEALELFCAIGNSKY--ELDIISYSCLIDGLCKIGKLETAWELFQSLS 453 (598)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 453 (598)
..+.........+ ......... .+...|+++.|...+.+...... ......+......+...++.+.+...+....
T Consensus 116 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 116 ELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 9999888754332 222222333 68889999999999998865321 1233444455555777889999999999988
Q ss_pred hCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccccchhHHHHHHHhc
Q 047932 454 RVGLLP-NVVTYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFIRNNETSKSSRGKLMSQMSSC 527 (598)
Q Consensus 454 ~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 527 (598)
... .. ....+..+...+...++++.|...+....... +.....+..+...+...|..+++.. .+......
T Consensus 195 ~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 265 (291)
T COG0457 195 KLN-PDDDAEALLNLGLLYLKLGKYEEALEYYEKALELD-PDNAEALYNLALLLLELGRYEEALE--ALEKALEL 265 (291)
T ss_pred hhC-cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhC-cccHHHHhhHHHHHHHcCCHHHHHH--HHHHHHHh
Confidence 752 22 35677778888888889999999999988753 2224555555555557777888888 88887755
No 265
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.69 E-value=3.6 Score=38.15 Aligned_cols=62 Identities=13% Similarity=0.086 Sum_probs=33.0
Q ss_pred HHHHHHHHHHhcCCHH---HHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccC
Q 047932 288 VYNTLMDGFCLTGRVN---HAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPK 350 (598)
Q Consensus 288 ~~~~ll~~~~~~g~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 350 (598)
++..++.+|...+..+ +|..+++.+.... +..+..+..-+..+.+.++.+++.+.+.+|...
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 4455556666655533 3444554554332 223444444455555566666777777666654
No 266
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.67 E-value=3.7 Score=38.13 Aligned_cols=167 Identities=12% Similarity=0.097 Sum_probs=98.6
Q ss_pred ccCCChHHHHHHHHHHHHcCCCCCCHHH-------HHHHHHHHHhcC-ChhHHHHHHHHHHhCCCCCCHHhHHHHHhccH
Q 047932 50 INLITPNEALCIFDYMLRMHPSPPPVSS-------FNILFGCLAKNK-HYDTVLSLFKRLNSTGLFPDLYTHSILINCRI 121 (598)
Q Consensus 50 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~-------~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~ 121 (598)
.++|+.+.|..++.++-...+. .++.. +...+......+ +++.|..++++..+
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~-~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~------------------ 64 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNS-LDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYD------------------ 64 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhc-CCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHH------------------
Confidence 3689999999999998665421 23322 223333344556 88888888877653
Q ss_pred HHHHHHHHH---HHHcCCCCC-----HhhHHHHHHHHHhcCChh---HHHHHHHHHHhcCCCCccccCCCHhHHHHHHHH
Q 047932 122 MEAAALFTK---LRVFGCEPD-----VFTYNTLINGLCRTGHTI---VALNLFEEMANGNGEFGVVCKPDTVTYNTIIDG 190 (598)
Q Consensus 122 ~~a~~~~~~---~~~~~~~~~-----~~~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ 190 (598)
+++. +.+. .++ ..++..++.+|...+..+ +|..+++.+.... +..+..+..-+..
T Consensus 65 -----~l~~~~~~~~~--~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-------~~~~~~~~L~l~i 130 (278)
T PF08631_consen 65 -----ILEKPGKMDKL--SPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEY-------GNKPEVFLLKLEI 130 (278)
T ss_pred -----HHHhhhhcccc--CCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-------CCCcHHHHHHHHH
Confidence 2222 1111 222 346777888888877654 4555666665543 3335666667777
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH---HhcCCHHHHHHHHHHHHHCCCCCCH
Q 047932 191 VCKEGFVDKAMELFLQMKDENINPNVVTYNSLIHCF---SHADDWNEAKRLFIKMMDQGVHPNV 251 (598)
Q Consensus 191 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~~~~~~ 251 (598)
+.+.++.+.+.+.+.+|... +.-....+..++..+ ... ....+...+..++...+.|..
T Consensus 131 l~~~~~~~~~~~~L~~mi~~-~~~~e~~~~~~l~~i~~l~~~-~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 131 LLKSFDEEEYEEILMRMIRS-VDHSESNFDSILHHIKQLAEK-SPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HhccCChhHHHHHHHHHHHh-cccccchHHHHHHHHHHHHhh-CcHHHHHHHHHHHHHHhCCCh
Confidence 77788999999999999875 221334444444443 332 334555555555544344443
No 267
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.65 E-value=1.7 Score=34.05 Aligned_cols=58 Identities=19% Similarity=0.244 Sum_probs=22.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 047932 398 IDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVG 456 (598)
Q Consensus 398 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 456 (598)
+..+...|.-+.-.+++..+.+.+ .+++.....+..+|.+.|+..++.+++.++-+.|
T Consensus 93 Ld~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 93 LDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 333444444444444444443321 3344444444444444444444444444444443
No 268
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.65 E-value=2.6 Score=39.26 Aligned_cols=229 Identities=13% Similarity=0.058 Sum_probs=107.6
Q ss_pred HHhcCCHHHHHHHHHHHHHCC--CCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhc--CCCc---CHHHHHHHHHHHHh
Q 047932 226 FSHADDWNEAKRLFIKMMDQG--VHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQI--GVHP---NTFVYNTLMDGFCL 298 (598)
Q Consensus 226 ~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~---~~~~~~~ll~~~~~ 298 (598)
+....+.++|+..+.+.+..- ...--.++..+..+.+..|.+++++..--.-++- .... --..|..+.+++.+
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK 95 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667777777777665531 0111234555666677777776655432211110 0010 11233444444444
Q ss_pred cCCHHHHHHHHHHHHHC-CCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHccC-----CCCCCHHHHHHHHHHHHhc
Q 047932 299 TGRVNHAKELFVSMESN-GCMH---DVVSYTTLINGYCKTKNVEEALNLYRKMLPK-----GIRPTVVTYSTLFLGLFEV 369 (598)
Q Consensus 299 ~g~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~ 369 (598)
.-++.+++.+-..-... |..+ .......+..++...+.++++++.|+....- +.......+..+...|.+.
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 44555555444443332 1111 1122333455556666667777776665432 1111224555666666666
Q ss_pred CCHHHHHHHHHHHhhC----CCCcCHHHH-----HHHHHHHHHcCCHHHHHHHHHHHhh----CCCCC-CHHHHHHHHHH
Q 047932 370 HQVEHALKLFDEMQHN----DVAADTYIY-----NTFIDGLCKNGFVLEALELFCAIGN----SKYEL-DIISYSCLIDG 435 (598)
Q Consensus 370 ~~~~~a~~~~~~~~~~----~~~~~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~-~~~~~~~l~~~ 435 (598)
.++++|.-+..++.+. ++..-..-| ..+.-++...|....|.+..++..+ .|-.+ .......+...
T Consensus 176 ~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDI 255 (518)
T KOG1941|consen 176 KDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADI 255 (518)
T ss_pred HhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 6676666665554332 111111111 1233344455666566555555432 22111 12233455566
Q ss_pred HHHcCCHHHHHHHHHHHHh
Q 047932 436 LCKIGKLETAWELFQSLSR 454 (598)
Q Consensus 436 ~~~~g~~~~A~~~~~~~~~ 454 (598)
|...|+.+.|+.-|+....
T Consensus 256 yR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 256 YRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHhcccHhHHHHHHHHHHH
Confidence 6666666666666665544
No 269
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.57 E-value=2.9 Score=36.44 Aligned_cols=56 Identities=13% Similarity=0.106 Sum_probs=27.7
Q ss_pred CCHHHHHHHHHHHHhC--CCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 047932 440 GKLETAWELFQSLSRV--GLLPN---VVTYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPD 495 (598)
Q Consensus 440 g~~~~A~~~~~~~~~~--~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 495 (598)
.+++.|+..|+..-+. |-..+ ...+.-+...-...+++.+|+++|++.....+..+
T Consensus 128 ~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~ 188 (288)
T KOG1586|consen 128 QDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNN 188 (288)
T ss_pred HHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 4556666666655431 11111 11222233333456777777777777765543333
No 270
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.35 E-value=2 Score=33.65 Aligned_cols=64 Identities=16% Similarity=0.127 Sum_probs=40.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCC
Q 047932 358 TYSTLFLGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKY 422 (598)
Q Consensus 358 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 422 (598)
.+...+..+...|.-++..+++..+.+.+ .+++.....+..+|.+.|+..++.+++.++-+.|.
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 34445566667777777777777776543 56777777777888888888888888877777664
No 271
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.17 E-value=2.6 Score=34.27 Aligned_cols=40 Identities=8% Similarity=0.085 Sum_probs=17.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHH
Q 047932 363 FLGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCK 403 (598)
Q Consensus 363 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 403 (598)
+..+...+.......+++.+...+ ..+....+.++..|++
T Consensus 14 v~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~ 53 (140)
T smart00299 14 VELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHH
Confidence 333333444444444444444443 2344444444444443
No 272
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.11 E-value=0.54 Score=39.52 Aligned_cols=92 Identities=9% Similarity=0.066 Sum_probs=51.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH-----HHHHHHHHhcCCccccchhHHHHHHHhcccCCCCCChHHHHH-
Q 047932 468 IHGLCNDGQMDKAHDLFLDMEAKGVEPDCVIF-----NTIMLGFIRNNETSKSSRGKLMSQMSSCWSMCFQPKTLICSI- 541 (598)
Q Consensus 468 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~- 541 (598)
...+..+|++++|...++..+.. |....+ ..|.+.....|.+++|.. .++..... +..+.......
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~--~L~t~~~~---~w~~~~~elrGD 167 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALK--TLDTIKEE---SWAAIVAELRGD 167 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHH--HHhccccc---cHHHHHHHHhhh
Confidence 34556677777777777666542 222222 223445666777777777 66665533 22222222222
Q ss_pred HHHHhCCCCCChhhHHHhhhcCcccc
Q 047932 542 SIMLQKDMSPGDTMFSTALLMDPDCS 567 (598)
Q Consensus 542 ~~~~~~~~~~a~~~~~~~l~~~P~~~ 567 (598)
++...|+-++|+..|+++++.+++.+
T Consensus 168 ill~kg~k~~Ar~ay~kAl~~~~s~~ 193 (207)
T COG2976 168 ILLAKGDKQEARAAYEKALESDASPA 193 (207)
T ss_pred HHHHcCchHHHHHHHHHHHHccCChH
Confidence 55566777777777777777764443
No 273
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.87 E-value=2.9 Score=33.91 Aligned_cols=126 Identities=13% Similarity=0.095 Sum_probs=78.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh
Q 047932 184 YNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCK 263 (598)
Q Consensus 184 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 263 (598)
...++..+...+.+......++.+...+. .+...++.++..|++.+ ..+..+.+.. ..+......+++.|.+
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~ 81 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEK 81 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHH
Confidence 34567777777888888888888887763 57778888888888654 3444444442 1233344557777777
Q ss_pred CCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 047932 264 NGKMEEASRLLDLMIQIGVHPNTFVYNTLMDGFCLT-GRVNHAKELFVSMESNGCMHDVVSYTTLINGYC 332 (598)
Q Consensus 264 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 332 (598)
.+.++++.-++..+-. .. ..+..+... ++.+.|.+.+.+. .+...|..++..+.
T Consensus 82 ~~l~~~~~~l~~k~~~-----~~----~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l 136 (140)
T smart00299 82 AKLYEEAVELYKKDGN-----FK----DAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKALL 136 (140)
T ss_pred cCcHHHHHHHHHhhcC-----HH----HHHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHHHH
Confidence 7777777777766522 11 122333333 6777777766642 15556666666554
No 274
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=93.74 E-value=13 Score=40.78 Aligned_cols=31 Identities=16% Similarity=0.218 Sum_probs=20.5
Q ss_pred CCCHhHHHHHHHHHHhcC--CHHHHHHHHHHHhh
Q 047932 178 KPDTVTYNTIIDGVCKEG--FVDKAMELFLQMKD 209 (598)
Q Consensus 178 ~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~ 209 (598)
.|+ .-...+|..|.+.+ .++.+++...+...
T Consensus 788 ~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 788 APD-KFNLFILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred Ccc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 454 44456778888877 67777776666654
No 275
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=93.55 E-value=3.2 Score=38.68 Aligned_cols=133 Identities=11% Similarity=0.183 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh--c----CChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcC
Q 047932 122 MEAAALFTKLRVFGCEPDVFTYNTLINGLCR--T----GHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEG 195 (598)
Q Consensus 122 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~----g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 195 (598)
++.+.+++.+.+.|+..+..+|.+....+.. . -...+|..+|+.|.+..+-. ..++...+..++.. ..+
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fL---Ts~~D~~~a~lLA~--~~~ 153 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFL---TSPEDYPFAALLAM--TSE 153 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccc---cCccchhHHHHHhc--ccc
Confidence 3455566677777776666655553333332 1 23457888999998876311 24455566666544 333
Q ss_pred C----HHHHHHHHHHHhhCCCCCCHH--HHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 047932 196 F----VDKAMELFLQMKDENINPNVV--TYNSLIHCFSHADD--WNEAKRLFIKMMDQGVHPNVVTFSVIVD 259 (598)
Q Consensus 196 ~----~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 259 (598)
+ .+.+..+|+.+...|...+-. ....++........ ..++.++++.+.+.|+++....|..+.-
T Consensus 154 ~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 154 DVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGL 225 (297)
T ss_pred cHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHH
Confidence 3 345667777777766654332 22223322222211 4577778888888887777766665443
No 276
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.25 E-value=0.93 Score=41.21 Aligned_cols=74 Identities=16% Similarity=0.211 Sum_probs=50.5
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhh-----CCCCCC
Q 047932 141 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKD-----ENINPN 215 (598)
Q Consensus 141 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~ 215 (598)
.++..++..+...|+++.+.+.++++...+ +-+...|..++.+|.+.|+...|+..|+++.+ .|+.|.
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-------p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~ 226 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-------PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPA 226 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-------ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCcc
Confidence 355666777777777777777777777765 55677777777777777777777777776654 255555
Q ss_pred HHHHHH
Q 047932 216 VVTYNS 221 (598)
Q Consensus 216 ~~~~~~ 221 (598)
..+...
T Consensus 227 ~~~~~~ 232 (280)
T COG3629 227 PELRAL 232 (280)
T ss_pred HHHHHH
Confidence 554443
No 277
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=93.22 E-value=15 Score=40.19 Aligned_cols=43 Identities=14% Similarity=0.153 Sum_probs=24.3
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHhCC--CHHHHHHHHHHHHh
Q 047932 235 AKRLFIKMMDQGVHPNVVTFSVIVDELCKNG--KMEEASRLLDLMIQ 279 (598)
Q Consensus 235 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~ 279 (598)
.-+.+...+.+ ..|+ .....++.+|.+.+ .++.+++.......
T Consensus 776 vc~~vr~~l~~-~~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 776 VCDAVRNALER-RAPD-KFNLFILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred HHHHHHHHHhh-cCcc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 33333333333 2444 44455677787777 66777776666654
No 278
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.17 E-value=0.2 Score=29.29 Aligned_cols=26 Identities=12% Similarity=0.245 Sum_probs=22.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHH
Q 047932 77 SFNILFGCLAKNKHYDTVLSLFKRLN 102 (598)
Q Consensus 77 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 102 (598)
+|..+..+|.+.|++++|+++|++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 47889999999999999999999965
No 279
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.06 E-value=1.4 Score=40.14 Aligned_cols=78 Identities=13% Similarity=0.171 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHHHH
Q 047932 427 ISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEA-----KGVEPDCVIFNT 501 (598)
Q Consensus 427 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~~~~ 501 (598)
.++..++..+...|+++.+...++++.... +-+...|..++.+|.+.|+...|+..|+++.+ .|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 456677777888888888888888887763 33677788888888888888888888887764 378888777766
Q ss_pred HHHH
Q 047932 502 IMLG 505 (598)
Q Consensus 502 l~~~ 505 (598)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 6665
No 280
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.99 E-value=4.4 Score=33.27 Aligned_cols=52 Identities=21% Similarity=0.272 Sum_probs=30.0
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHHC
Q 047932 437 CKIGKLETAWELFQSLSRVGLLPNVVTYNI-MIHGLCNDGQMDKAHDLFLDMEAK 490 (598)
Q Consensus 437 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~ 490 (598)
...++.+++..++..+.- +.|....... -...+...|+|.+|+++|+++...
T Consensus 21 l~~~~~~D~e~lL~ALrv--LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRV--LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HccCChHHHHHHHHHHHH--hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 345667777777776665 3444332221 123355677777777777776554
No 281
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=92.84 E-value=1.1 Score=39.97 Aligned_cols=35 Identities=31% Similarity=0.284 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCc
Q 047932 478 DKAHDLFLDMEAKGVEPDCVIFNTIMLGFIRNNET 512 (598)
Q Consensus 478 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 512 (598)
+-++.++++|...|+-||..+-..++.++.+.|-.
T Consensus 140 ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 140 NCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred hHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 46899999999999999999999999999777654
No 282
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=92.78 E-value=0.29 Score=28.57 Aligned_cols=25 Identities=16% Similarity=0.143 Sum_probs=16.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 047932 464 YNIMIHGLCNDGQMDKAHDLFLDME 488 (598)
Q Consensus 464 ~~~l~~~~~~~g~~~~A~~~~~~~~ 488 (598)
|+.|...|.+.|++++|+++|++.+
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5667777777777777777777744
No 283
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=92.52 E-value=12 Score=36.91 Aligned_cols=77 Identities=22% Similarity=0.260 Sum_probs=57.9
Q ss_pred hHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHH-------hccHHHHHHH
Q 047932 55 PNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILI-------NCRIMEAAAL 127 (598)
Q Consensus 55 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll-------~~~~~~a~~~ 127 (598)
+.+-..+|+.+....+. |+..|...+..+.+.+.+.+.-.+|.+|+.. .|+....-... +.+++.|+.+
T Consensus 87 ~~rIv~lyr~at~rf~~--D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~--Hp~~~dLWI~aA~wefe~n~ni~saRal 162 (568)
T KOG2396|consen 87 PNRIVFLYRRATNRFNG--DVKLWLSYIAFCKKKKTYGEVKKIFAAMLAK--HPNNPDLWIYAAKWEFEINLNIESARAL 162 (568)
T ss_pred HHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHhcchhHHHHHHHHHHHh--CCCCchhHHhhhhhHHhhccchHHHHHH
Confidence 45666778888776665 9999999999998888899999999999876 34433322222 2278999999
Q ss_pred HHHHHHcC
Q 047932 128 FTKLRVFG 135 (598)
Q Consensus 128 ~~~~~~~~ 135 (598)
|...++.+
T Consensus 163 flrgLR~n 170 (568)
T KOG2396|consen 163 FLRGLRFN 170 (568)
T ss_pred HHHHhhcC
Confidence 99988874
No 284
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=92.44 E-value=2.7 Score=35.77 Aligned_cols=62 Identities=11% Similarity=0.173 Sum_probs=34.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HhhHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 047932 218 TYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPN--VVTFSVIVDELCKNGKMEEASRLLDLMIQ 279 (598)
Q Consensus 218 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 279 (598)
.+..+...|.+.|+.+.|.+.|.++.+....+. ...+-.+++...-.+++..+...+.++..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 455556666666666666666666655432222 22344555555666666666555555443
No 285
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.30 E-value=16 Score=37.94 Aligned_cols=273 Identities=14% Similarity=0.086 Sum_probs=154.6
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHH-----HHhcCCHHHHHHHHHHHHH-------CCCCCCHhhHHHHHHHHHhC
Q 047932 197 VDKAMELFLQMKDENINPNVVTYNSLIHC-----FSHADDWNEAKRLFIKMMD-------QGVHPNVVTFSVIVDELCKN 264 (598)
Q Consensus 197 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~ 264 (598)
...|.+.++...+.| +......+..+ +....|.+.|...|+.+.+ .| .......+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 467888888888775 33333333333 3456789999999998877 44 333556677777764
Q ss_pred C-----CHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH----hc
Q 047932 265 G-----KMEEASRLLDLMIQIGVHPNTFVYNTLMDGFCL-TGRVNHAKELFVSMESNGCMHDVVSYTTLINGYC----KT 334 (598)
Q Consensus 265 g-----~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~ 334 (598)
. +.+.|..++...-..|. |+.......+..... ..+...|.++|......| ....+-.+..+|. -.
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G---~~~A~~~la~~y~~G~gv~ 377 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG---HILAIYRLALCYELGLGVE 377 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC---ChHHHHHHHHHHHhCCCcC
Confidence 3 56779999998888773 344333222222222 235779999999998887 3333333333333 23
Q ss_pred CCHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHH-HHHH---HH----cCC
Q 047932 335 KNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTF-IDGL---CK----NGF 406 (598)
Q Consensus 335 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~---~~----~g~ 406 (598)
.+...|..++.+..+.|. |....-...+..+.. +.++.+...+..+...+... ..+-... +... .. ..+
T Consensus 378 r~~~~A~~~~k~aA~~g~-~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~~-~q~~a~~l~~~~~~~~~~~~~~~~ 454 (552)
T KOG1550|consen 378 RNLELAFAYYKKAAEKGN-PSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYEV-AQSNAAYLLDQSEEDLFSRGVIST 454 (552)
T ss_pred CCHHHHHHHHHHHHHccC-hhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhhH-HhhHHHHHHHhccccccccccccc
Confidence 467899999999888872 232222222333333 67777766666666554321 1111111 1111 00 124
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH----hcCCHH
Q 047932 407 VLEALELFCAIGNSKYELDIISYSCLIDGLCKI----GKLETAWELFQSLSRVGLLPNVVTYNIMIHGLC----NDGQMD 478 (598)
Q Consensus 407 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~----~~g~~~ 478 (598)
...+...+......| +......+...|..- .+++.|...+......+ ......+...+- ... +.
T Consensus 455 ~~~~~~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~----~~~~~nlg~~~e~g~g~~~-~~ 526 (552)
T KOG1550|consen 455 LERAFSLYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG----AQALFNLGYMHEHGEGIKV-LH 526 (552)
T ss_pred hhHHHHHHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh----hHHHhhhhhHHhcCcCcch-hH
Confidence 555666666665544 445555555554433 35777777777776653 333333333332 123 56
Q ss_pred HHHHHHHHHHHC
Q 047932 479 KAHDLFLDMEAK 490 (598)
Q Consensus 479 ~A~~~~~~~~~~ 490 (598)
.|.+++++..+.
T Consensus 527 ~a~~~~~~~~~~ 538 (552)
T KOG1550|consen 527 LAKRYYDQASEE 538 (552)
T ss_pred HHHHHHHHHHhc
Confidence 777777776654
No 286
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=92.13 E-value=0.18 Score=45.94 Aligned_cols=23 Identities=13% Similarity=0.079 Sum_probs=14.1
Q ss_pred hCCCCCChhhHHHhhhcCccccc
Q 047932 546 QKDMSPGDTMFSTALLMDPDCSC 568 (598)
Q Consensus 546 ~~~~~~a~~~~~~~l~~~P~~~~ 568 (598)
.|+..+|.+.++.+|++.|++..
T Consensus 178 Lg~~~EAKkD~E~vL~LEP~~~E 200 (536)
T KOG4648|consen 178 LGNNMEAKKDCETVLALEPKNIE 200 (536)
T ss_pred HhhHHHHHHhHHHHHhhCcccHH
Confidence 35555666666666666666543
No 287
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.11 E-value=17 Score=37.91 Aligned_cols=55 Identities=15% Similarity=-0.020 Sum_probs=36.8
Q ss_pred cccCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047932 49 DINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNS 103 (598)
Q Consensus 49 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 103 (598)
+++.+.|++|+.+-+.....-+....-..+..++..+...|++.+|-.+.-+|..
T Consensus 366 ll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g 420 (846)
T KOG2066|consen 366 LLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG 420 (846)
T ss_pred HHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc
Confidence 3455667888877665433322212345677888888888899888888877774
No 288
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=91.91 E-value=19 Score=38.00 Aligned_cols=183 Identities=15% Similarity=0.110 Sum_probs=97.7
Q ss_pred HHHHHHHHHH-HcCCCC--CHhhHHHHHHHHH-hcCChhHHHHHHHHHHhcCCCCccccCCCH-----hHHHHHHHHHHh
Q 047932 123 EAAALFTKLR-VFGCEP--DVFTYNTLINGLC-RTGHTIVALNLFEEMANGNGEFGVVCKPDT-----VTYNTIIDGVCK 193 (598)
Q Consensus 123 ~a~~~~~~~~-~~~~~~--~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~-----~~~~~li~~~~~ 193 (598)
.|+..++-+. ...+.| +..++..++..|. ...+++.|...+++...... +++. .....++..+.+
T Consensus 39 ~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~------~~~~~d~k~~~~~ll~~i~~~ 112 (608)
T PF10345_consen 39 TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCE------RHRLTDLKFRCQFLLARIYFK 112 (608)
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc------ccchHHHHHHHHHHHHHHHHh
Confidence 3445555444 222233 3345566677666 56788888888887755431 1211 122345566666
Q ss_pred cCCHHHHHHHHHHHhhC--C--CCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHCC---CCCCHhhHHHHHHHHH--h
Q 047932 194 EGFVDKAMELFLQMKDE--N--INPNVVTYNSL-IHCFSHADDWNEAKRLFIKMMDQG---VHPNVVTFSVIVDELC--K 263 (598)
Q Consensus 194 ~g~~~~A~~~~~~~~~~--~--~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~--~ 263 (598)
.+... |...+++..+. + ..+-...|..+ +..+...++...|.+.++.+...- ..|...++..++.+.. .
T Consensus 113 ~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~ 191 (608)
T PF10345_consen 113 TNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLR 191 (608)
T ss_pred cCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhc
Confidence 66555 88888776653 1 11112223333 222333478888888888776542 2233334444444333 4
Q ss_pred CCCHHHHHHHHHHHHhcC---------CCcCHHHHHHHHHH--HHhcCCHHHHHHHHHHH
Q 047932 264 NGKMEEASRLLDLMIQIG---------VHPNTFVYNTLMDG--FCLTGRVNHAKELFVSM 312 (598)
Q Consensus 264 ~g~~~~a~~~~~~~~~~~---------~~~~~~~~~~ll~~--~~~~g~~~~a~~~~~~~ 312 (598)
.+..+++.+.++.+.... ..|...++..++.. +...|+++.+...++++
T Consensus 192 ~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 192 RGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred CCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 455666666666663321 12345556666544 45567766766665554
No 289
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=91.88 E-value=6.6 Score=32.72 Aligned_cols=101 Identities=17% Similarity=0.214 Sum_probs=49.8
Q ss_pred HHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 047932 237 RLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTLMDGFCLTGRVNHAKELFVSMESNG 316 (598)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 316 (598)
+.++.+.+.+++|+...+..+++.+.+.|++... ..+++.++-+|.......+-.+. +.+..+.++--+|...
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L----~qllq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR- 87 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQL----HQLLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR- 87 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH----HHHHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH-
Confidence 3444455556666666666666666666665443 33334444444443333332221 2223333333333332
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 047932 317 CMHDVVSYTTLINGYCKTKNVEEALNLYRKM 347 (598)
Q Consensus 317 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 347 (598)
=...+..++..+...|++-+|+++.+..
T Consensus 88 ---L~~~~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 88 ---LGTAYEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred ---hhhhHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 0112445556666667777777666654
No 290
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=91.79 E-value=35 Score=40.80 Aligned_cols=324 Identities=12% Similarity=0.035 Sum_probs=167.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 047932 145 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTYNSLIH 224 (598)
Q Consensus 145 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 224 (598)
.+..+-.+.+.+.+|...++.-...... -......|..+...|...+++|...-+...-.. +...+ .-+.
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~----~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~sl~-~qil 1457 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKE----KETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DPSLY-QQIL 1457 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccch----hHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----CccHH-HHHH
Confidence 4455566788899999888884111100 011233444555589999999988877764221 22223 2344
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcCHHHHH-HHHHHHHhcCCHH
Q 047932 225 CFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVYN-TLMDGFCLTGRVN 303 (598)
Q Consensus 225 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~ll~~~~~~g~~~ 303 (598)
.....|+|..|...|+.+.+.+ ++...+++.++......|.++..+-..+-..... .+....++ .-+.+.-+.+++|
T Consensus 1458 ~~e~~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD 1535 (2382)
T KOG0890|consen 1458 EHEASGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWD 1535 (2382)
T ss_pred HHHhhccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchh
Confidence 5677899999999999998763 3346678888888888888887777665554432 22233333 3334556778888
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHH--HHHHHh--cCCHHHHHHHHHHHccCCCCC---------CHHHHHHHHHHHHhcC
Q 047932 304 HAKELFVSMESNGCMHDVVSYTTL--INGYCK--TKNVEEALNLYRKMLPKGIRP---------TVVTYSTLFLGLFEVH 370 (598)
Q Consensus 304 ~a~~~~~~~~~~~~~~~~~~~~~l--~~~~~~--~~~~~~A~~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~~ 370 (598)
.....+. .. +..+|... +....+ ..+.-.-.+.++.+.+.-+.| -...|..++..+.-..
T Consensus 1536 ~~e~~l~---~~----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~e 1608 (2382)
T KOG0890|consen 1536 LLESYLS---DR----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLE 1608 (2382)
T ss_pred hhhhhhh---cc----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHH
Confidence 7777665 11 33333333 222222 222222222333222211100 1123333333322111
Q ss_pred CHHHHHHHHHHHh-hCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHH-hhC----CC-CCCHHHHHHHHHHHHHcCCHH
Q 047932 371 QVEHALKLFDEMQ-HNDVAADTYIYNTFIDGLCKNGFVLEALELFCAI-GNS----KY-ELDIISYSCLIDGLCKIGKLE 443 (598)
Q Consensus 371 ~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~----~~-~~~~~~~~~l~~~~~~~g~~~ 443 (598)
--... +.+.... ......+..-|..-+..-....+..+-+-.+++. ... +. .--..+|...++...+.|+++
T Consensus 1609 l~~~~-~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q 1687 (2382)
T KOG0890|consen 1609 LENSI-EELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQ 1687 (2382)
T ss_pred HHHHH-HHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHH
Confidence 10000 0000000 0000111111111111111111111111111111 111 11 123567888888888999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 047932 444 TAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEAKG 491 (598)
Q Consensus 444 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 491 (598)
.|...+-...+.+ .| ..+.-.+.-....|+...|+.++++.++..
T Consensus 1688 ~A~nall~A~e~r-~~--~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1688 RAQNALLNAKESR-LP--EIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHHHHHHhhhhcc-cc--hHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 9998887777754 33 334556777888999999999999988653
No 291
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=91.70 E-value=0.22 Score=28.61 Aligned_cols=24 Identities=17% Similarity=0.301 Sum_probs=20.0
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHH
Q 047932 178 KPDTVTYNTIIDGVCKEGFVDKAM 201 (598)
Q Consensus 178 ~~~~~~~~~li~~~~~~g~~~~A~ 201 (598)
|.+...|+.+...|...|++++|+
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 567888888888888888888875
No 292
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=91.69 E-value=0.43 Score=27.25 Aligned_cols=30 Identities=13% Similarity=0.204 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 047932 75 VSSFNILFGCLAKNKHYDTVLSLFKRLNST 104 (598)
Q Consensus 75 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 104 (598)
+.+|..++..+...|++++|+..|+++++.
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 357888899999999999999999998865
No 293
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=91.56 E-value=0.44 Score=27.10 Aligned_cols=29 Identities=10% Similarity=0.193 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 047932 76 SSFNILFGCLAKNKHYDTVLSLFKRLNST 104 (598)
Q Consensus 76 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 104 (598)
.+|..+...+.+.|++++|++.|++.++.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 56778888899999999999999988764
No 294
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=91.40 E-value=22 Score=37.80 Aligned_cols=226 Identities=16% Similarity=0.097 Sum_probs=121.3
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCh-------hhHHHHHH-HHHhcCCHHHHHHHHHHHccC----CCCCCHHHHHHHH
Q 047932 296 FCLTGRVNHAKELFVSMESNGCMHDV-------VSYTTLIN-GYCKTKNVEEALNLYRKMLPK----GIRPTVVTYSTLF 363 (598)
Q Consensus 296 ~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~-~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~~l~ 363 (598)
.....++++|..++.++...-..|+. ..++.+-. .....|++++|.++.+..... -..+....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 44568899999998887654222221 12333322 334578899999888876553 2233556677778
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHH---H--HHHHHHcCCH--HHHHHHHHHHhhC---CCC---CCHHHHH
Q 047932 364 LGLFEVHQVEHALKLFDEMQHNDVAADTYIYNT---F--IDGLCKNGFV--LEALELFCAIGNS---KYE---LDIISYS 430 (598)
Q Consensus 364 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---l--~~~~~~~g~~--~~A~~~~~~~~~~---~~~---~~~~~~~ 430 (598)
.+..-.|++++|..+.....+..-..+...+.. + ...+..+|+. .+.+..|...... ..+ +-..+..
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 888889999999999877665422223333322 2 2335566733 3333333333211 001 1223444
Q ss_pred HHHHHHHHc-CCHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHCCC----CCCHHHHHHHH
Q 047932 431 CLIDGLCKI-GKLETAWELFQSLSRVGLLPNVVT--YNIMIHGLCNDGQMDKAHDLFLDMEAKGV----EPDCVIFNTIM 503 (598)
Q Consensus 431 ~l~~~~~~~-g~~~~A~~~~~~~~~~~~~p~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~p~~~~~~~l~ 503 (598)
.+..++.+. +...++..-+.-.......|-... +..|+......|+.++|...+.++..... .++..+-...+
T Consensus 585 ~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v 664 (894)
T COG2909 585 QLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKV 664 (894)
T ss_pred HHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHh
Confidence 455554441 222222222222222222222222 22566777889999999999998876422 22222222333
Q ss_pred HH--HHhcCCccccchhHHHHH
Q 047932 504 LG--FIRNNETSKSSRGKLMSQ 523 (598)
Q Consensus 504 ~~--~~~~g~~~~A~~~~~~~~ 523 (598)
.. ....|+.+++.. ...+
T Consensus 665 ~~~lwl~qg~~~~a~~--~l~~ 684 (894)
T COG2909 665 KLILWLAQGDKELAAE--WLLK 684 (894)
T ss_pred hHHHhcccCCHHHHHH--HHHh
Confidence 32 235777777666 5555
No 295
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=90.97 E-value=8.3 Score=32.14 Aligned_cols=135 Identities=15% Similarity=0.183 Sum_probs=82.8
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhc
Q 047932 201 MELFLQMKDENINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQI 280 (598)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 280 (598)
.+.++.+...+++|+...+..++..+.+.|.+.....++ ..++-+|.......+-.+ .+.+..+.++--+|..+
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qll----q~~Vi~DSk~lA~~LLs~--~~~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLL----QYHVIPDSKPLACQLLSL--GNQYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH----hhcccCCcHHHHHHHHHh--HccChHHHHHHHHHHHH
Confidence 355566667788899999999999999999876655544 444555554443333222 22344455544444442
Q ss_pred CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHcc
Q 047932 281 GVHPNTFVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLP 349 (598)
Q Consensus 281 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 349 (598)
=...+..++..+...|++-+|.++.+..... +......++.+..+.++...-..+++-..+
T Consensus 88 ----L~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 88 ----LGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred ----hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1114556677888899999999888775432 223345566666677776655555555444
No 296
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=90.96 E-value=5 Score=33.58 Aligned_cols=116 Identities=15% Similarity=0.135 Sum_probs=70.0
Q ss_pred hHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH---hcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhccHHHHHHHHHHH
Q 047932 55 PNEALCIFDYMLRMHPSPPPVSSFNILFGCLA---KNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCRIMEAAALFTKL 131 (598)
Q Consensus 55 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~a~~~~~~~ 131 (598)
++.|++.++.....+|. ++..++.-..++. +..+..++..+++.. +.-|++.
T Consensus 7 FE~ark~aea~y~~nP~--DadnL~~WG~ALLELAqfk~g~es~~miedA-----------------------isK~eeA 61 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPL--DADNLTNWGGALLELAQFKQGPESKKMIEDA-----------------------ISKFEEA 61 (186)
T ss_dssp HHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHHHS-HHHHHHHHHHH-----------------------HHHHHHH
T ss_pred HHHHHHHHHHHHHhCcH--hHHHHHHHHHHHHHHHhccCcchHHHHHHHH-----------------------HHHHHHH
Confidence 57788888888888887 7776655444444 334445555555544 4455666
Q ss_pred HHcCCCCC-HhhHHHHHHHHHhcCC-----------hhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHH
Q 047932 132 RVFGCEPD-VFTYNTLINGLCRTGH-----------TIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDK 199 (598)
Q Consensus 132 ~~~~~~~~-~~~~~~l~~~~~~~g~-----------~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 199 (598)
+..+ |+ ..++.++..+|...+. +++|.+.|++.... .|+...|+.-+.... +
T Consensus 62 L~I~--P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~--------~P~ne~Y~ksLe~~~------k 125 (186)
T PF06552_consen 62 LKIN--PNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDE--------DPNNELYRKSLEMAA------K 125 (186)
T ss_dssp HHH---TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH---------TT-HHHHHHHHHHH------T
T ss_pred HhcC--CchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHH------h
Confidence 6553 33 4566777777765432 56677777777774 588889988887753 4
Q ss_pred HHHHHHHHhhCC
Q 047932 200 AMELFLQMKDEN 211 (598)
Q Consensus 200 A~~~~~~~~~~~ 211 (598)
|-++..++.+.+
T Consensus 126 ap~lh~e~~~~~ 137 (186)
T PF06552_consen 126 APELHMEIHKQG 137 (186)
T ss_dssp HHHHHHHHHHSS
T ss_pred hHHHHHHHHHHH
Confidence 556666665543
No 297
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=90.96 E-value=2.1 Score=36.35 Aligned_cols=96 Identities=16% Similarity=0.129 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCHHHHHHH
Q 047932 428 SYSCLIDGLCKIGKLETAWELFQSLSRVGLLPN--VVTYNIMIHGLCNDGQMDKAHDLFLDMEAK---GVEPDCVIFNTI 502 (598)
Q Consensus 428 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~p~~~~~~~l 502 (598)
.+..++..|.+.|+.+.|.+.|.++.+....+. ...+..+++.....|++..+...+.++... +-.++...-...
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 456667777777777777777777766433333 234556666777777777777776666543 111111111111
Q ss_pred HH--HHHhcCCccccchhHHHHHHH
Q 047932 503 ML--GFIRNNETSKSSRGKLMSQMS 525 (598)
Q Consensus 503 ~~--~~~~~g~~~~A~~~~~~~~~~ 525 (598)
.. .+...|++.+|-+ .|-...
T Consensus 118 ~~gL~~l~~r~f~~AA~--~fl~~~ 140 (177)
T PF10602_consen 118 YEGLANLAQRDFKEAAE--LFLDSL 140 (177)
T ss_pred HHHHHHHHhchHHHHHH--HHHccC
Confidence 11 2345677777776 665554
No 298
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.76 E-value=8.6 Score=31.92 Aligned_cols=123 Identities=14% Similarity=0.095 Sum_probs=47.8
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCcCHH-HHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHH-HH--HHHHHHHHHcCCH
Q 047932 367 FEVHQVEHALKLFDEMQHNDVAADTY-IYNTFIDGLCKNGFVLEALELFCAIGNSKYELDII-SY--SCLIDGLCKIGKL 442 (598)
Q Consensus 367 ~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~--~~l~~~~~~~g~~ 442 (598)
.+.+..++|+.-|..+.+.|...-+. ............|+...|...|+++......|-.. -. ..-...+...|.+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 34455555555555555544221111 11112222344455555555555554332222111 00 0111123344444
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047932 443 ETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEA 489 (598)
Q Consensus 443 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 489 (598)
+......+-+...+-+.....-..|.-+-.+.|++..|.+.|..+..
T Consensus 149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 44444444443322222222223333344445555555555544443
No 299
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=90.58 E-value=15 Score=34.35 Aligned_cols=130 Identities=13% Similarity=0.233 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh--cC----CHHHHHHHHHHHHHCCC---CCCHhhHHHHHHHHHhCCC-
Q 047932 197 VDKAMELFLQMKDENINPNVVTYNSLIHCFSH--AD----DWNEAKRLFIKMMDQGV---HPNVVTFSVIVDELCKNGK- 266 (598)
Q Consensus 197 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~----~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~- 266 (598)
+++...+++.|.+.|..-+..+|-+....... .. ...++..+|+.|++.-. .++...+..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 33455666777777766665554432222211 11 24556666776665421 1223333333322 2222
Q ss_pred ---HHHHHHHHHHHHhcCCCcCHH--HHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCChhhHHHHH
Q 047932 267 ---MEEASRLLDLMIQIGVHPNTF--VYNTLMDGFCLTGR--VNHAKELFVSMESNGCMHDVVSYTTLI 328 (598)
Q Consensus 267 ---~~~a~~~~~~~~~~~~~~~~~--~~~~ll~~~~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~l~ 328 (598)
.+.+..+|+.+.+.|+..+.. ....++.......+ ..++.++++.+.+.|++.....|..+.
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence 234455555555555433221 12222221111111 234555555555555555554444443
No 300
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=90.47 E-value=3.4 Score=37.08 Aligned_cols=114 Identities=18% Similarity=0.227 Sum_probs=82.8
Q ss_pred hHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHhc-----CChhHHHHHHHHHHhCCCCCCHHhHHHHHhc---------
Q 047932 55 PNEALCIFDYMLRM-HPSPPPVSSFNILFGCLAKN-----KHYDTVLSLFKRLNSTGLFPDLYTHSILINC--------- 119 (598)
Q Consensus 55 ~~~A~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~--------- 119 (598)
+.+++-.|+..-.. .|...+-.+|...+..+... +..+=-...++.|...|+..|..+|+.+|+.
T Consensus 46 pTK~Lv~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~ 125 (406)
T KOG3941|consen 46 PTKSLVHVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQ 125 (406)
T ss_pred ccccccchhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccH
Confidence 34454444443322 22335778888888887643 4455566677889999999999999999986
Q ss_pred ------------cHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChh-HHHHHHHHHHh
Q 047932 120 ------------RIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTI-VALNLFEEMAN 168 (598)
Q Consensus 120 ------------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~A~~~~~~~~~ 168 (598)
+-+=++.++++|.-.|+-||-.+-..|++++.+.|-.- +...+.-.|.+
T Consensus 126 nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmPk 187 (406)
T KOG3941|consen 126 NVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMPK 187 (406)
T ss_pred HHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhhh
Confidence 45568899999999999999999999999999888653 34444445544
No 301
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=90.35 E-value=25 Score=36.53 Aligned_cols=17 Identities=18% Similarity=0.264 Sum_probs=8.9
Q ss_pred CCHHHHHHHHHHHHHCC
Q 047932 230 DDWNEAKRLFIKMMDQG 246 (598)
Q Consensus 230 ~~~~~a~~~~~~~~~~~ 246 (598)
.+...|..++.+..+.|
T Consensus 378 r~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 378 RNLELAFAYYKKAAEKG 394 (552)
T ss_pred CCHHHHHHHHHHHHHcc
Confidence 34555555555555544
No 302
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=90.22 E-value=18 Score=34.87 Aligned_cols=65 Identities=11% Similarity=0.057 Sum_probs=38.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCc---CHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 047932 355 TVVTYSTLFLGLFEVHQVEHALKLFDEMQHNDVAA---DTYIYNTFIDGLCKNGFVLEALELFCAIGN 419 (598)
Q Consensus 355 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 419 (598)
...++..++..+.+.|.++.|...+..+...+... .+.+...-+..+-..|+..+|+..++...+
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34556666667777777777777777766533111 233444445555666777777776666654
No 303
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=89.36 E-value=31 Score=36.29 Aligned_cols=47 Identities=11% Similarity=0.224 Sum_probs=31.1
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q 047932 181 TVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTYNSLIHCFSHA 229 (598)
Q Consensus 181 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 229 (598)
...| .+|-.|.|.|++++|.++....... .......+...+..|...
T Consensus 112 ~p~W-a~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 112 DPIW-ALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASS 158 (613)
T ss_dssp EEHH-HHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTT
T ss_pred CccH-HHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhC
Confidence 3344 4778899999999999999665543 333455666667776654
No 304
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=89.28 E-value=1.1 Score=25.45 Aligned_cols=25 Identities=12% Similarity=0.183 Sum_probs=10.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 047932 464 YNIMIHGLCNDGQMDKAHDLFLDME 488 (598)
Q Consensus 464 ~~~l~~~~~~~g~~~~A~~~~~~~~ 488 (598)
|..++.+|...|++++|+..|++++
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~al 28 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRAL 28 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHH
Confidence 3334444444444444444444443
No 305
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=89.16 E-value=32 Score=36.18 Aligned_cols=43 Identities=21% Similarity=0.142 Sum_probs=27.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhc
Q 047932 145 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKE 194 (598)
Q Consensus 145 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 194 (598)
.+|--|.|+|++++|.++.......- ......+...+..|...
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~~-------~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQF-------QKIERSFPTYLKAYASS 158 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGGS--------TTTTHHHHHHHHCTTT
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhhh-------cchhHHHHHHHHHHHhC
Confidence 35666789999999999995554432 34455666666666654
No 306
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=88.92 E-value=25 Score=34.69 Aligned_cols=93 Identities=12% Similarity=0.121 Sum_probs=60.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHH
Q 047932 430 SCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLC--NDGQMDKAHDLFLDMEAK-GVEPDCVIFNTIMLGF 506 (598)
Q Consensus 430 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~ 506 (598)
+.++..+...|-..+|...+..+... .+|+...|..++..-. ..-+...+.++|+.|... | .|+..|...+.--
T Consensus 464 s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg--~d~~lw~~y~~~e 540 (568)
T KOG2396|consen 464 SKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG--ADSDLWMDYMKEE 540 (568)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC--CChHHHHHHHHhh
Confidence 45666667777777777777777665 4556666666665322 122266777777777654 4 5677777666666
Q ss_pred HhcCCccccchhHHHHHHHhc
Q 047932 507 IRNNETSKSSRGKLMSQMSSC 527 (598)
Q Consensus 507 ~~~g~~~~A~~~~~~~~~~~~ 527 (598)
...|..+.+-. ++.++.+.
T Consensus 541 ~~~g~~en~~~--~~~ra~kt 559 (568)
T KOG2396|consen 541 LPLGRPENCGQ--IYWRAMKT 559 (568)
T ss_pred ccCCCcccccH--HHHHHHHh
Confidence 67777777777 77666655
No 307
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=88.75 E-value=15 Score=31.83 Aligned_cols=30 Identities=27% Similarity=0.211 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 047932 462 VTYNIMIHGLCNDGQMDKAHDLFLDMEAKG 491 (598)
Q Consensus 462 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 491 (598)
.||.-|...+...|+.++|..+|+-.+..+
T Consensus 238 EtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 238 ETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 456777777888888888888888777653
No 308
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=88.28 E-value=7.5 Score=33.09 Aligned_cols=90 Identities=20% Similarity=0.097 Sum_probs=61.0
Q ss_pred HHHHHcCCHHHHHHHHHHHhhCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHh
Q 047932 399 DGLCKNGFVLEALELFCAIGNSKYELD----IISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPN-VVTYNIMIHGLCN 473 (598)
Q Consensus 399 ~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~ 473 (598)
.-+.+.|++++|..-|..++....... ...|..-..++.+.+.++.|+.-..+.++. .|+ ......-..+|.+
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel--~pty~kAl~RRAeayek 180 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIEL--NPTYEKALERRAEAYEK 180 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc--CchhHHHHHHHHHHHHh
Confidence 346778888888888888876642221 224555556777888888888887777774 333 3334444556777
Q ss_pred cCCHHHHHHHHHHHHHC
Q 047932 474 DGQMDKAHDLFLDMEAK 490 (598)
Q Consensus 474 ~g~~~~A~~~~~~~~~~ 490 (598)
...+++|++-|+++++.
T Consensus 181 ~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILES 197 (271)
T ss_pred hhhHHHHHHHHHHHHHh
Confidence 78888888888888875
No 309
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=88.25 E-value=0.61 Score=45.99 Aligned_cols=101 Identities=15% Similarity=0.021 Sum_probs=76.2
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccccchhHHHHHHHhcccCCCCCChHHHHH---HHHHhCC
Q 047932 472 CNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFIRNNETSKSSRGKLMSQMSSCWSMCFQPKTLICSI---SIMLQKD 548 (598)
Q Consensus 472 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~---~~~~~~~ 548 (598)
...|+...|...+..+....-....+....|.....+.|...+|.. ++.+.+..+ ...+.++.. ......|
T Consensus 618 r~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~--~l~q~l~~~----~sepl~~~~~g~~~l~l~~ 691 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATK--LLLQALAIN----SSEPLTFLSLGNAYLALKN 691 (886)
T ss_pred eecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHH--HHHHHHhhc----ccCchHHHhcchhHHHHhh
Confidence 3579999999999888754312233455667778888899999999 999988762 334444433 5666889
Q ss_pred CCCChhhHHHhhhcCccccchhhHhhhhCC
Q 047932 549 MSPGDTMFSTALLMDPDCSCDLESLIHNTD 578 (598)
Q Consensus 549 ~~~a~~~~~~~l~~~P~~~~~~~~l~~~~~ 578 (598)
++.|++.++.++.++|+++..-+.|..--+
T Consensus 692 i~~a~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 692 ISGALEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred hHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 999999999999999999998888754433
No 310
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=88.17 E-value=13 Score=31.68 Aligned_cols=95 Identities=17% Similarity=0.063 Sum_probs=70.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCcC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 047932 363 FLGLFEVHQVEHALKLFDEMQHNDVAAD-----TYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLC 437 (598)
Q Consensus 363 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 437 (598)
..-+...|++++|..-|..++... ++. ...|..-..++.+.+.++.|+.-..+.++.+ +.....+..-..+|.
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~c-p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAeaye 179 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALESC-PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEAYE 179 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHhC-ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHHHH
Confidence 344778999999999999998863 332 3445556677889999999999888888765 223344455567888
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCH
Q 047932 438 KIGKLETAWELFQSLSRVGLLPNV 461 (598)
Q Consensus 438 ~~g~~~~A~~~~~~~~~~~~~p~~ 461 (598)
+..++++|+.-|.++.+. .|..
T Consensus 180 k~ek~eealeDyKki~E~--dPs~ 201 (271)
T KOG4234|consen 180 KMEKYEEALEDYKKILES--DPSR 201 (271)
T ss_pred hhhhHHHHHHHHHHHHHh--Ccch
Confidence 889999999999999885 4543
No 311
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.09 E-value=8.3 Score=35.35 Aligned_cols=48 Identities=10% Similarity=0.254 Sum_probs=23.9
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047932 441 KLETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDME 488 (598)
Q Consensus 441 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 488 (598)
++++++.++..=++.|+-||..+++.+++.+.+.+++.+|.++.-.|+
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~ 162 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVM 162 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 344444444444445555555555555555555555555544444443
No 312
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=87.77 E-value=42 Score=35.85 Aligned_cols=227 Identities=16% Similarity=0.059 Sum_probs=121.0
Q ss_pred HHHhCCCHHHHHHHHHHHHhcCCCcCHH-------HHHHHH-HHHHhcCCHHHHHHHHHHHHHC----CCCCChhhHHHH
Q 047932 260 ELCKNGKMEEASRLLDLMIQIGVHPNTF-------VYNTLM-DGFCLTGRVNHAKELFVSMESN----GCMHDVVSYTTL 327 (598)
Q Consensus 260 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~-------~~~~ll-~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~l 327 (598)
......++++|..++.++...-..|+.. .++.+- ......|+++.|.++.+..... -..+....+..+
T Consensus 424 ~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~ 503 (894)
T COG2909 424 LLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVL 503 (894)
T ss_pred HHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhh
Confidence 4456788999999988876542222211 233322 2334578899999888877654 123345666777
Q ss_pred HHHHHhcCCHHHHHHHHHHHccCCCCCCHHHH---HHHH--HHHHhcCCHH--HHHHHHHHHhhC---CCC---cCHHHH
Q 047932 328 INGYCKTKNVEEALNLYRKMLPKGIRPTVVTY---STLF--LGLFEVHQVE--HALKLFDEMQHN---DVA---ADTYIY 394 (598)
Q Consensus 328 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~---~~l~--~~~~~~~~~~--~a~~~~~~~~~~---~~~---~~~~~~ 394 (598)
..+..-.|++++|..+..+..+..-.-+...+ ..+. ..+...|+.. +....|...... ..+ +-..++
T Consensus 504 ~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r 583 (894)
T COG2909 504 GEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIR 583 (894)
T ss_pred hHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHH
Confidence 78888899999999988876554222233322 2222 2344566332 223333332221 111 112333
Q ss_pred HHHHHHHHHc-CCHHHHHHHHHHHhhCCCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC----CCHHHHHHH
Q 047932 395 NTFIDGLCKN-GFVLEALELFCAIGNSKYELDII--SYSCLIDGLCKIGKLETAWELFQSLSRVGLL----PNVVTYNIM 467 (598)
Q Consensus 395 ~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----p~~~~~~~l 467 (598)
..+..++.+. +...++..-+.-.......|-.. .+..|+......|++++|...++++...... ++..+....
T Consensus 584 ~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~ 663 (894)
T COG2909 584 AQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYK 663 (894)
T ss_pred HHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHH
Confidence 4444444441 22223333332222222122222 2236788888999999999999988763222 232222223
Q ss_pred HHH--HHhcCCHHHHHHHHHH
Q 047932 468 IHG--LCNDGQMDKAHDLFLD 486 (598)
Q Consensus 468 ~~~--~~~~g~~~~A~~~~~~ 486 (598)
+.. ....|+...+.....+
T Consensus 664 v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 664 VKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred hhHHHhcccCCHHHHHHHHHh
Confidence 332 3367887777766655
No 313
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=87.77 E-value=1.6 Score=24.69 Aligned_cols=25 Identities=12% Similarity=0.125 Sum_probs=10.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Q 047932 465 NIMIHGLCNDGQMDKAHDLFLDMEA 489 (598)
Q Consensus 465 ~~l~~~~~~~g~~~~A~~~~~~~~~ 489 (598)
..+..++...|++++|++.|++.++
T Consensus 5 ~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 5 YYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3344444444444444444444443
No 314
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=87.72 E-value=14 Score=30.39 Aligned_cols=18 Identities=22% Similarity=0.298 Sum_probs=7.9
Q ss_pred HHHcCCHHHHHHHHHHHH
Q 047932 436 LCKIGKLETAWELFQSLS 453 (598)
Q Consensus 436 ~~~~g~~~~A~~~~~~~~ 453 (598)
++..|++.+|+.+|+++.
T Consensus 54 ~i~r~~w~dA~rlLr~l~ 71 (160)
T PF09613_consen 54 HIVRGDWDDALRLLRELE 71 (160)
T ss_pred HHHhCCHHHHHHHHHHHh
Confidence 334444444444444443
No 315
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.72 E-value=30 Score=34.06 Aligned_cols=380 Identities=10% Similarity=0.008 Sum_probs=194.2
Q ss_pred hcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcC-CHHHHHHHHHHHhhCCCCCCHHHH-----HHHHHH
Q 047932 152 RTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEG-FVDKAMELFLQMKDENINPNVVTY-----NSLIHC 225 (598)
Q Consensus 152 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~-----~~l~~~ 225 (598)
...+++.|...+++........+......-.++..|...|+... .+..+..++++..+..- +...| .-|+..
T Consensus 59 yT~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq--~~p~wsckllfQLaql 136 (629)
T KOG2300|consen 59 YTKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQ--SVPYWSCKLLFQLAQL 136 (629)
T ss_pred HhccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhc--CCchhhHHHHHHHHHH
Confidence 34567777777776544332221112233456777888888776 78889999988876421 22223 235566
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHH------HHhCCCH---HHHHHHHHHHHhcCCCcCHHH------HH
Q 047932 226 FSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDE------LCKNGKM---EEASRLLDLMIQIGVHPNTFV------YN 290 (598)
Q Consensus 226 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~------~~~~g~~---~~a~~~~~~~~~~~~~~~~~~------~~ 290 (598)
+.-..|+..|.+++.---+. -.+--..|..++.. .....+. ..+.....++.+. ..+|... |.
T Consensus 137 ~~idkD~~sA~elLavga~s-Ad~~~~~ylr~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n-~~sdk~~~E~LkvFy 214 (629)
T KOG2300|consen 137 HIIDKDFPSALELLAVGAES-ADHICFPYLRMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQN-ISSDKTQKEMLKVFY 214 (629)
T ss_pred HhhhccchhHHHHHhccccc-cchhhhHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhc-cCCChHHHHHHHHHH
Confidence 67788999998885432211 11222233322221 2222343 4444444555543 3444332 21
Q ss_pred --HHHHHHHhcCCHHHHHHHHHHHHHC---CC------------CCChhhHHHHHH-------------HHHhcCCHHHH
Q 047932 291 --TLMDGFCLTGRVNHAKELFVSMESN---GC------------MHDVVSYTTLIN-------------GYCKTKNVEEA 340 (598)
Q Consensus 291 --~ll~~~~~~g~~~~a~~~~~~~~~~---~~------------~~~~~~~~~l~~-------------~~~~~~~~~~A 340 (598)
.-+.-|...|+...+...++++... +- .|.+..+..+.. .-.-.|-+++|
T Consensus 215 l~lql~yy~~~gq~rt~k~~lkQLQ~siqtist~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~ 294 (629)
T KOG2300|consen 215 LVLQLSYYLLPGQVRTVKPALKQLQDSIQTISTSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKA 294 (629)
T ss_pred HHHHHHHHhcccchhhhHHHHHHHHHHHhccCCCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHH
Confidence 2234456678888777777766432 11 112221111111 00122334444
Q ss_pred HHHHH-------HHccCCCCCCHHHHH--------HHHHHHHhcCCHHHHHHHHHHHhhCC-CCcC--------HHHHHH
Q 047932 341 LNLYR-------KMLPKGIRPTVVTYS--------TLFLGLFEVHQVEHALKLFDEMQHND-VAAD--------TYIYNT 396 (598)
Q Consensus 341 ~~~~~-------~~~~~~~~~~~~~~~--------~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~--------~~~~~~ 396 (598)
.++-+ +..+... ....++ .++.+-.-.|++.+|+.-...|.+-. -.|. ......
T Consensus 295 ~K~tDe~i~q~eklkq~d~--~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~L 372 (629)
T KOG2300|consen 295 QKYTDEAIKQTEKLKQADL--MSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHML 372 (629)
T ss_pred HHHHHHHHHHHhhcccccc--hhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHH
Confidence 44443 3333321 222222 22222234789999998888887531 1222 112222
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHH--HHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCCHH-----HHHHHH
Q 047932 397 FIDGLCKNGFVLEALELFCAIGNSKYELDIISY--SCLIDGLCKIGKLETAWELFQSLSRVGL-LPNVV-----TYNIMI 468 (598)
Q Consensus 397 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~-----~~~~l~ 468 (598)
+...++..+.++.|+.-|....+..-..|...+ ..+...|.+.|+.+.-.++++.+-..+- ..... .+....
T Consensus 373 lGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~g 452 (629)
T KOG2300|consen 373 LGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYG 452 (629)
T ss_pred HhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHH
Confidence 334456678999999999887764333343333 4566778888888877777776543210 11111 111111
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCCccccchhHHHHHHHhcccCCCCCChHHHHH
Q 047932 469 HGLCNDGQMDKAHDLFLDMEAKGVEPD-----CVIFNTIMLGFIRNNETSKSSRGKLMSQMSSCWSMCFQPKTLICSI 541 (598)
Q Consensus 469 ~~~~~~g~~~~A~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~ 541 (598)
-.....+++.+|...+.+-++..-..| .-....+...+...|+..++.. .+.-..+. ..-.||..+-..
T Consensus 453 lfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~n--mvrpamql--AkKi~Di~vqLw 526 (629)
T KOG2300|consen 453 LFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRN--MVRPAMQL--AKKIPDIPVQLW 526 (629)
T ss_pred HHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHh--ccchHHHH--HhcCCCchHHHH
Confidence 223478999999999998876421111 1122333445667787777666 54433222 122467655433
No 316
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=87.66 E-value=0.69 Score=25.99 Aligned_cols=28 Identities=29% Similarity=0.460 Sum_probs=19.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 047932 77 SFNILFGCLAKNKHYDTVLSLFKRLNST 104 (598)
Q Consensus 77 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 104 (598)
++..++.++.+.|++++|.+.|+++++.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3445666677777777777777777654
No 317
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.50 E-value=9.9 Score=38.22 Aligned_cols=44 Identities=16% Similarity=0.089 Sum_probs=20.5
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHH
Q 047932 228 HADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLM 277 (598)
Q Consensus 228 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 277 (598)
+.|+++.|.++..+.. +..-|..|.++..+.|++..|.+.|...
T Consensus 649 ~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a 692 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRA 692 (794)
T ss_pred hcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhh
Confidence 4445555544443321 3334555555555555555555554443
No 318
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=86.84 E-value=35 Score=33.90 Aligned_cols=180 Identities=13% Similarity=0.158 Sum_probs=100.0
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHH
Q 047932 178 KPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVI 257 (598)
Q Consensus 178 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 257 (598)
+.|.....+++..+..+....-...+-.+|..-| -+...|..++.+|... ..++-..+++++.+..+. |+..-..|
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReL 138 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGREL 138 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHH
Confidence 4455666667777777766766777777776643 3566677777777766 446666777766665332 33333344
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhcCCCc--C---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCChhhHHHHHHHH
Q 047932 258 VDELCKNGKMEEASRLLDLMIQIGVHP--N---TFVYNTLMDGFCLTGRVNHAKELFVSMESN-GCMHDVVSYTTLINGY 331 (598)
Q Consensus 258 ~~~~~~~g~~~~a~~~~~~~~~~~~~~--~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~ 331 (598)
+..|-+ ++.+.+...|.++...=++. + ...|..+... -..+.+....+...+... |...-...+.-+-..|
T Consensus 139 a~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 139 ADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 444444 66666777776665542110 1 1133333321 134555566665555443 2223344444555566
Q ss_pred HhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHHH
Q 047932 332 CKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLG 365 (598)
Q Consensus 332 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 365 (598)
....++++|++++..+.+.+-+ |..+-..++.-
T Consensus 216 s~~eN~~eai~Ilk~il~~d~k-~~~ar~~~i~~ 248 (711)
T COG1747 216 SENENWTEAIRILKHILEHDEK-DVWARKEIIEN 248 (711)
T ss_pred ccccCHHHHHHHHHHHhhhcch-hhhHHHHHHHH
Confidence 6677777777777777665433 44444444443
No 319
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=86.69 E-value=1.7 Score=26.06 Aligned_cols=29 Identities=21% Similarity=0.306 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047932 75 VSSFNILFGCLAKNKHYDTVLSLFKRLNS 103 (598)
Q Consensus 75 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 103 (598)
..+++.+...|...|++++|..+++++..
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 35788999999999999999999998864
No 320
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=86.42 E-value=24 Score=31.65 Aligned_cols=162 Identities=12% Similarity=0.163 Sum_probs=90.8
Q ss_pred cccCCChHHHHHHHHHHHHcCCCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhccHHHHHH
Q 047932 49 DINLITPNEALCIFDYMLRMHPSPP--PVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCRIMEAAA 126 (598)
Q Consensus 49 ~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~a~~ 126 (598)
-++..++++|+..|+..++..|... ...+...++....+.|++++....|.+++..
T Consensus 37 ~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTY---------------------- 94 (440)
T KOG1464|consen 37 GLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTY---------------------- 94 (440)
T ss_pred cccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHH----------------------
Confidence 3466789999999999998776522 3456678899999999999999999888732
Q ss_pred HHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHH-------HHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHH
Q 047932 127 LFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFE-------EMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDK 199 (598)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~-------~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 199 (598)
....+..+ -+..+.|+++..-....+.+.-.+.|+ .+.... .| + .|-.-|...|...|.+.+
T Consensus 95 -IkSAVTrN--ySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeR--LW--F----KTNtKLgkl~fd~~e~~k 163 (440)
T KOG1464|consen 95 -IKSAVTRN--YSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNER--LW--F----KTNTKLGKLYFDRGEYTK 163 (440)
T ss_pred -HHHHHhcc--ccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcce--ee--e----eccchHhhhheeHHHHHH
Confidence 11111111 123344455444444333333333333 222111 00 1 122446667777777777
Q ss_pred HHHHHHHHhhCCCC----C-------CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047932 200 AMELFLQMKDENIN----P-------NVVTYNSLIHCFSHADDWNEAKRLFIKMM 243 (598)
Q Consensus 200 A~~~~~~~~~~~~~----~-------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 243 (598)
..++++++...-.. . -...|..=|..|...++-.....+|++.+
T Consensus 164 l~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqal 218 (440)
T KOG1464|consen 164 LQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQAL 218 (440)
T ss_pred HHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHH
Confidence 77777776543100 0 12344444555555555555555555543
No 321
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=86.30 E-value=46 Score=34.75 Aligned_cols=155 Identities=11% Similarity=0.093 Sum_probs=78.8
Q ss_pred HHHHHHHhcCChhHHHHHHHHHH-hCCCCCCHHhHHHHHhc----cHHHHHHHHHHHH-HcCCCCCH-hhHHHHHHHHHh
Q 047932 80 ILFGCLAKNKHYDTVLSLFKRLN-STGLFPDLYTHSILINC----RIMEAAALFTKLR-VFGCEPDV-FTYNTLINGLCR 152 (598)
Q Consensus 80 ~l~~~~~~~g~~~~A~~~~~~~~-~~~~~p~~~~~~~ll~~----~~~~a~~~~~~~~-~~~~~~~~-~~~~~l~~~~~~ 152 (598)
.+-..|.-.|++++|+..--..- ...+.++...+.+++.. -++.+.+.+..-. ..++.+.. ...+.++..|..
T Consensus 64 ~~SKVyy~Lgeye~Al~yAL~ag~~F~Vd~~S~y~etivak~id~yi~~~~~~~~~~~~~~~iD~rL~~iv~rmi~kcl~ 143 (929)
T KOG2062|consen 64 LASKVYYYLGEYEDALEYALRAGDDFDVDENSDYVETIVAKCIDMYIETASETYKNPEQKSPIDQRLRDIVERMIQKCLD 143 (929)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCccccccCccchhhHHHHHHHHHHHHHHHHHhcCccccCCCCHHHHHHHHHHHHHhhh
Confidence 34456667788888887665543 33456666666666655 2333444433211 11111111 234556666666
Q ss_pred cCChhHHHH---------HHHHH-HhcCCCCccccCCCHhHHHHHHHHHHhcCC-HHHHHHHHHHHhhC---CCCCCHHH
Q 047932 153 TGHTIVALN---------LFEEM-ANGNGEFGVVCKPDTVTYNTIIDGVCKEGF-VDKAMELFLQMKDE---NINPNVVT 218 (598)
Q Consensus 153 ~g~~~~A~~---------~~~~~-~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~~~~~---~~~~~~~~ 218 (598)
.+++..|+. ++++. .+.+ .+....+.++..+....+ .+--.++++.+.+. ...||
T Consensus 144 d~e~~~aiGia~E~~rld~ie~Ail~~d--------~~~~~~~yll~l~~s~v~~~efR~~vlr~lv~~y~~~~~PD--- 212 (929)
T KOG2062|consen 144 DNEYKQAIGIAFETRRLDIIEEAILKSD--------SVIGNLTYLLELLISLVNNREFRNKVLRLLVKTYLKLPSPD--- 212 (929)
T ss_pred hhHHHHHHhHHhhhhhHHHHHHHhcccc--------ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCCC---
Confidence 666555433 34442 2222 112233333333333222 22223333333332 23333
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047932 219 YNSLIHCFSHADDWNEAKRLFIKMMDQ 245 (598)
Q Consensus 219 ~~~l~~~~~~~~~~~~a~~~~~~~~~~ 245 (598)
|..+..+|....+.+.+.++++++.+.
T Consensus 213 y~~vc~c~v~Ldd~~~va~ll~kL~~e 239 (929)
T KOG2062|consen 213 YFSVCQCYVFLDDAEAVADLLEKLVKE 239 (929)
T ss_pred eeeeeeeeEEcCCHHHHHHHHHHHHhc
Confidence 556778888889999999999998874
No 322
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.29 E-value=12 Score=37.58 Aligned_cols=99 Identities=17% Similarity=0.104 Sum_probs=51.3
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 047932 296 FCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFEVHQVEHA 375 (598)
Q Consensus 296 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 375 (598)
..+.|+++.|.++..+.. +..-|..|..+..+.+++..|.+.|.+... |..|+-.+...|+.+..
T Consensus 647 al~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l 711 (794)
T KOG0276|consen 647 ALKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGL 711 (794)
T ss_pred hhhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHH
Confidence 345566666666554433 445566666666666666666666665443 23344445555555544
Q ss_pred HHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 047932 376 LKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFC 415 (598)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 415 (598)
..+-....+.| ..+. ...++...|+++++.+++.
T Consensus 712 ~~la~~~~~~g-~~N~-----AF~~~~l~g~~~~C~~lLi 745 (794)
T KOG0276|consen 712 AVLASLAKKQG-KNNL-----AFLAYFLSGDYEECLELLI 745 (794)
T ss_pred HHHHHHHHhhc-ccch-----HHHHHHHcCCHHHHHHHHH
Confidence 44444444443 1111 1223444566665555543
No 323
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=86.25 E-value=6.5 Score=28.91 Aligned_cols=45 Identities=9% Similarity=0.069 Sum_probs=24.4
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047932 444 TAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDME 488 (598)
Q Consensus 444 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 488 (598)
++.+-++.+...++.|+.....+-+++|.+.+++..|+++|+-..
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 344444444445555555555555555555555555555555444
No 324
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=86.01 E-value=4.9 Score=38.98 Aligned_cols=126 Identities=12% Similarity=0.118 Sum_probs=82.8
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 047932 147 INGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTYNSLIHCF 226 (598)
Q Consensus 147 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 226 (598)
|.--...|+.-.|-+-+....++. +.++.............|+++.+.+.+...... +.....+...+++..
T Consensus 296 i~k~~~~gd~~aas~~~~~~lr~~-------~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~ 367 (831)
T PRK15180 296 ITKQLADGDIIAASQQLFAALRNQ-------QQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSL 367 (831)
T ss_pred HHHHhhccCHHHHHHHHHHHHHhC-------CCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhh
Confidence 333445677766655555554443 223333333334456789999999888776553 333566778888888
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Q 047932 227 SHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIG 281 (598)
Q Consensus 227 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 281 (598)
.+.|+++.|..+-+.|+...+. +...........-..|-++++...|+++...+
T Consensus 368 ~~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 368 HGLARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred hchhhHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 9999999999998888876554 44444444444556677888888888887654
No 325
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=85.74 E-value=6 Score=29.08 Aligned_cols=60 Identities=13% Similarity=0.183 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHH
Q 047932 123 EAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIID 189 (598)
Q Consensus 123 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~ 189 (598)
+.++-++.+...+..|+..+..+.+++|-+.+++..|.++|+.+...- ..+...|..+++
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~-------~~~~~~y~~~lq 84 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC-------GAHKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-------cCchhhHHHHHH
Confidence 566667777777888999999999999999999999999999887542 233445655543
No 326
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=85.73 E-value=9.3 Score=32.77 Aligned_cols=79 Identities=15% Similarity=0.144 Sum_probs=48.1
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCHhhHHHHHHHHHhCCCH
Q 047932 191 VCKEGFVDKAMELFLQMKDENINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQ---GVHPNVVTFSVIVDELCKNGKM 267 (598)
Q Consensus 191 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~ 267 (598)
+.+.|+ +.|.+.|-.+...+.--++.....|...|. ..+.+++..++.+.++. +-.+|+..+..|+..+.+.|++
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 344444 566666666666554445555555555554 55667777777766653 2245666777777777777777
Q ss_pred HHHH
Q 047932 268 EEAS 271 (598)
Q Consensus 268 ~~a~ 271 (598)
+.|.
T Consensus 195 e~AY 198 (203)
T PF11207_consen 195 EQAY 198 (203)
T ss_pred hhhh
Confidence 6653
No 327
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=85.58 E-value=6.6 Score=33.92 Aligned_cols=75 Identities=17% Similarity=0.202 Sum_probs=45.3
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCC--CCCCHHHHHH
Q 047932 144 NTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDEN--INPNVVTYNS 221 (598)
Q Consensus 144 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~ 221 (598)
+..+..+.+.++..+++...+.-++.+ |.|...-..+++.+|-.|++++|..-++-..... ..+....|..
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkak-------Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~ 77 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAK-------PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRH 77 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcC-------CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHH
Confidence 444556667777777777777666654 4556666667777777777777766665554431 2223445555
Q ss_pred HHHH
Q 047932 222 LIHC 225 (598)
Q Consensus 222 l~~~ 225 (598)
++++
T Consensus 78 lir~ 81 (273)
T COG4455 78 LIRC 81 (273)
T ss_pred HHHH
Confidence 5543
No 328
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=85.25 E-value=54 Score=34.63 Aligned_cols=191 Identities=14% Similarity=0.071 Sum_probs=90.7
Q ss_pred HhcCCHHHHHHHHHHHccCCC-CC-----CHHHHHHHHH--HHHhcCCHHHHHHHHH--------HHhhCCCCcCHHHHH
Q 047932 332 CKTKNVEEALNLYRKMLPKGI-RP-----TVVTYSTLFL--GLFEVHQVEHALKLFD--------EMQHNDVAADTYIYN 395 (598)
Q Consensus 332 ~~~~~~~~A~~~~~~~~~~~~-~~-----~~~~~~~l~~--~~~~~~~~~~a~~~~~--------~~~~~~~~~~~~~~~ 395 (598)
+-.+++..|...+..+..... .| ....+...+. .+...|+.+.|...|. .....+...+..++.
T Consensus 372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila 451 (608)
T PF10345_consen 372 FIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILA 451 (608)
T ss_pred HHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHH
Confidence 347888889988888775311 11 1122222222 3345789999999997 444444444444443
Q ss_pred HH--HHHHHHcC--CHHH--HHHHHHHHhhC---CCCCCHHHHHHHH-HHHHHcC--CHHHHHHHHHHHHhC---CCCCC
Q 047932 396 TF--IDGLCKNG--FVLE--ALELFCAIGNS---KYELDIISYSCLI-DGLCKIG--KLETAWELFQSLSRV---GLLPN 460 (598)
Q Consensus 396 ~l--~~~~~~~g--~~~~--A~~~~~~~~~~---~~~~~~~~~~~l~-~~~~~~g--~~~~A~~~~~~~~~~---~~~p~ 460 (598)
.+ +..+...+ ...+ +..+++.+... ....+..++..++ .++.... ...++...+.+..+. ....+
T Consensus 452 ~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~ 531 (608)
T PF10345_consen 452 ALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNS 531 (608)
T ss_pred HHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccc
Confidence 32 11122222 2223 66677666532 1112233333333 3332211 122444444433221 01111
Q ss_pred ---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CC--CHHHHHH-----HHHHHHhcCCccccchhHHHHHHH
Q 047932 461 ---VVTYNIMIHGLCNDGQMDKAHDLFLDMEAKGV-EP--DCVIFNT-----IMLGFIRNNETSKSSRGKLMSQMS 525 (598)
Q Consensus 461 ---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p--~~~~~~~-----l~~~~~~~g~~~~A~~~~~~~~~~ 525 (598)
..+++.+...+. .|+..+..+.........- .| ....|.. +...+...|+.++|.. ...+..
T Consensus 532 ~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~--~~~~~~ 604 (608)
T PF10345_consen 532 QLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEE--ARQQLD 604 (608)
T ss_pred hHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHH--HHHHHH
Confidence 122333333333 6777776555554432211 12 3344533 3344778899999888 776654
No 329
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=85.14 E-value=2.5 Score=25.25 Aligned_cols=28 Identities=14% Similarity=0.241 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047932 462 VTYNIMIHGLCNDGQMDKAHDLFLDMEA 489 (598)
Q Consensus 462 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 489 (598)
.+++.|...|...|++++|..++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4566777777777777777777777654
No 330
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=85.11 E-value=38 Score=32.77 Aligned_cols=168 Identities=10% Similarity=-0.012 Sum_probs=86.7
Q ss_pred CcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH---HHcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 047932 388 AADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGL---CKIGKLETAWELFQSLSRVGLLPNVVTY 464 (598)
Q Consensus 388 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 464 (598)
+-...++..+...+...|+.+.|.+++++++-.- + .++......+ ...|.. + ......-|...|
T Consensus 37 PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~---e-~~~~~~F~~~~~~~~~g~~--------r-L~~~~~eNR~ff 103 (360)
T PF04910_consen 37 PYHIDTLLQLSEVYRQQGDHAQANDLLERALFAF---E-RAFHPSFSPFRSNLTSGNC--------R-LDYRRPENRQFF 103 (360)
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH---H-HHHHHHhhhhhcccccCcc--------c-cCCccccchHHH
Confidence 4456666677777777888777777777664110 0 0000000000 000000 0 000011133333
Q ss_pred HHH---HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCCccccchhHHHHHHHhccc---CCCCCChH
Q 047932 465 NIM---IHGLCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFI-RNNETSKSSRGKLMSQMSSCWS---MCFQPKTL 537 (598)
Q Consensus 465 ~~l---~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~---~~~~p~~~ 537 (598)
.++ +..+.+.|-+..|.++.+-+...+..-|+......|+.|. +.++++--++ +.+....... ...-|+..
T Consensus 104 lal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~--~~~~~~~~~~~~~~~~lPn~a 181 (360)
T PF04910_consen 104 LALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLID--FSESPLAKCYRNWLSLLPNFA 181 (360)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHH--HHHhHhhhhhhhhhhhCccHH
Confidence 333 4556677888888888888877663336666666666653 6666666666 6665543100 01234443
Q ss_pred HHHH-HHHHhCCC---------------CCChhhHHHhhhcCccccchh
Q 047932 538 ICSI-SIMLQKDM---------------SPGDTMFSTALLMDPDCSCDL 570 (598)
Q Consensus 538 ~~~~-~~~~~~~~---------------~~a~~~~~~~l~~~P~~~~~~ 570 (598)
.-.. .....++. +.|....++++...|.-...+
T Consensus 182 ~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~vl~~L 230 (360)
T PF04910_consen 182 FSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWVLVPL 230 (360)
T ss_pred HHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHHHHHHH
Confidence 3333 22333444 678888888888887655544
No 331
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=85.11 E-value=3.1 Score=38.35 Aligned_cols=97 Identities=14% Similarity=-0.008 Sum_probs=65.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 047932 396 TFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDG 475 (598)
Q Consensus 396 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 475 (598)
.-.+-|.++|.+++|++.|...+... +-++.++..-..+|.+..++..|..-....+..+ ..-...|..-+.+-...|
T Consensus 102 E~GN~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 102 ERGNTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLG 179 (536)
T ss_pred HhhhhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHh
Confidence 34667889999999999998887653 3377888888889999999988887777666531 001233444444444456
Q ss_pred CHHHHHHHHHHHHHCCCCCCH
Q 047932 476 QMDKAHDLFLDMEAKGVEPDC 496 (598)
Q Consensus 476 ~~~~A~~~~~~~~~~~~~p~~ 496 (598)
+..+|.+-++..+. ++|+.
T Consensus 180 ~~~EAKkD~E~vL~--LEP~~ 198 (536)
T KOG4648|consen 180 NNMEAKKDCETVLA--LEPKN 198 (536)
T ss_pred hHHHHHHhHHHHHh--hCccc
Confidence 67777777777665 45663
No 332
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.01 E-value=7 Score=35.77 Aligned_cols=102 Identities=14% Similarity=0.206 Sum_probs=55.4
Q ss_pred CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHH
Q 047932 281 GVHPNTFVYNTLMDGFCLTGRVNHAKELFVSMESNG---CMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVV 357 (598)
Q Consensus 281 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 357 (598)
|......+...++.......+++.++..+-++.... ..++. +-...++.+ -.-++++++.++..=+.-|+-||.+
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irll-lky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHH-HccChHHHHHHHhCcchhccccchh
Confidence 334444445555554455566666666666665431 01111 111122222 2235556666666666667777777
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 047932 358 TYSTLFLGLFEVHQVEHALKLFDEMQH 384 (598)
Q Consensus 358 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 384 (598)
+++.++..+.+.+++.+|..+...|..
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 777777777777777666666655554
No 333
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=84.56 E-value=6.3 Score=29.33 Aligned_cols=60 Identities=13% Similarity=0.169 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHH
Q 047932 123 EAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIID 189 (598)
Q Consensus 123 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~ 189 (598)
+..+-++.+...+..|+..+..+.+.+|.+.+++..|.++|+.+...- .+....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~-------~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC-------GNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-------TT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-------cChHHHHHHHHH
Confidence 556667777777888999999999999999999999999999988763 233336665554
No 334
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=84.32 E-value=33 Score=31.36 Aligned_cols=42 Identities=19% Similarity=0.194 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 047932 56 NEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKR 100 (598)
Q Consensus 56 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 100 (598)
.+|+++|..+....+. . ..-..++..+....+..+|...+..
T Consensus 150 ~KA~ELFayLv~hkgk--~-v~~~~~ie~lwpe~D~kka~s~lhT 191 (361)
T COG3947 150 RKALELFAYLVEHKGK--E-VTSWEAIEALWPEKDEKKASSLLHT 191 (361)
T ss_pred hHHHHHHHHHHHhcCC--c-ccHhHHHHHHccccchhhHHHHHHH
Confidence 6899999999887654 2 3344566666677777666665543
No 335
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=83.95 E-value=15 Score=31.53 Aligned_cols=20 Identities=5% Similarity=0.092 Sum_probs=8.4
Q ss_pred CHHHHHHHHHHHHhcCCccc
Q 047932 495 DCVIFNTIMLGFIRNNETSK 514 (598)
Q Consensus 495 ~~~~~~~l~~~~~~~g~~~~ 514 (598)
|+..+.+|+..|.+.|+++.
T Consensus 177 n~eil~sLas~~~~~~~~e~ 196 (203)
T PF11207_consen 177 NPEILKSLASIYQKLKNYEQ 196 (203)
T ss_pred CHHHHHHHHHHHHHhcchhh
Confidence 34444444444444444433
No 336
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=83.30 E-value=3.3 Score=23.38 Aligned_cols=29 Identities=14% Similarity=0.196 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 047932 76 SSFNILFGCLAKNKHYDTVLSLFKRLNST 104 (598)
Q Consensus 76 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 104 (598)
.+|..+...+...|++++|...|++.++.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 46888899999999999999999998764
No 337
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=82.96 E-value=51 Score=32.57 Aligned_cols=41 Identities=12% Similarity=0.186 Sum_probs=31.6
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHH
Q 047932 193 KEGFVDKAMELFLQMKDENINPNVVTYNSLIHCFSHADDWN 233 (598)
Q Consensus 193 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 233 (598)
..+.++...+++..+...|.......++.-...|.+.|...
T Consensus 29 ~~~~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~tq 69 (696)
T KOG2471|consen 29 NNSEFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGCTQ 69 (696)
T ss_pred CCcchHHHHHHHHHHHhccccccceeeehhhHHHHhcccch
Confidence 46789999999999998877766666777777777777643
No 338
>PRK09687 putative lyase; Provisional
Probab=82.87 E-value=40 Score=31.27 Aligned_cols=79 Identities=15% Similarity=0.175 Sum_probs=36.9
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCH----HHHHHHHHHHhhCCCC
Q 047932 138 PDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFV----DKAMELFLQMKDENIN 213 (598)
Q Consensus 138 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~----~~A~~~~~~~~~~~~~ 213 (598)
+|..+....+..+...|.. .+...+..+.. .+|...-...+.+++..|+. .++...+..+... .
T Consensus 35 ~d~~vR~~A~~aL~~~~~~-~~~~~l~~ll~---------~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D 102 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGGQ-DVFRLAIELCS---------SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--D 102 (280)
T ss_pred CCHHHHHHHHHHHHhcCcc-hHHHHHHHHHh---------CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--C
Confidence 4555555555666555542 33333333332 23455555555666666653 3455555554322 2
Q ss_pred CCHHHHHHHHHHHHh
Q 047932 214 PNVVTYNSLIHCFSH 228 (598)
Q Consensus 214 ~~~~~~~~l~~~~~~ 228 (598)
++..+-...+.++..
T Consensus 103 ~d~~VR~~A~~aLG~ 117 (280)
T PRK09687 103 KSACVRASAINATGH 117 (280)
T ss_pred CCHHHHHHHHHHHhc
Confidence 344444444444433
No 339
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=82.57 E-value=48 Score=31.94 Aligned_cols=67 Identities=12% Similarity=0.077 Sum_probs=51.2
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 047932 319 HDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRP---TVVTYSTLFLGLFEVHQVEHALKLFDEMQHN 385 (598)
Q Consensus 319 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 385 (598)
....+|..++..+.+.|.++.|...+..+...+... .+.....-++.+-..|+..+|...++.....
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~ 213 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC 213 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 356678889999999999999999999988754221 3344444566677789999999999888873
No 340
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.89 E-value=84 Score=34.25 Aligned_cols=27 Identities=26% Similarity=0.537 Sum_probs=20.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 047932 183 TYNTIIDGVCKEGFVDKAMELFLQMKD 209 (598)
Q Consensus 183 ~~~~li~~~~~~g~~~~A~~~~~~~~~ 209 (598)
-|..|+..|...|+.++|+++|.+...
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhc
Confidence 366777777777888888888777765
No 341
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=81.83 E-value=9.6 Score=28.39 Aligned_cols=45 Identities=9% Similarity=0.066 Sum_probs=22.2
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047932 445 AWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEA 489 (598)
Q Consensus 445 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 489 (598)
..+-++.+....+.|++....+.+.+|.+.+++..|+++|+-...
T Consensus 29 ~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~ 73 (108)
T PF02284_consen 29 LRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKD 73 (108)
T ss_dssp HHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 444444444455555555555555555555555555555555543
No 342
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=81.30 E-value=2.3 Score=22.48 Aligned_cols=23 Identities=17% Similarity=0.075 Sum_probs=18.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHH
Q 047932 77 SFNILFGCLAKNKHYDTVLSLFK 99 (598)
Q Consensus 77 ~~~~l~~~~~~~g~~~~A~~~~~ 99 (598)
+...+...+...|++++|..+++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 45567788888899998888876
No 343
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=80.68 E-value=16 Score=30.65 Aligned_cols=109 Identities=18% Similarity=0.158 Sum_probs=54.0
Q ss_pred hhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhc---CCHHHHHHH-------HHHHhhCCCCCCH-HHHHHHHH
Q 047932 156 TIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKE---GFVDKAMEL-------FLQMKDENINPNV-VTYNSLIH 224 (598)
Q Consensus 156 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~-------~~~~~~~~~~~~~-~~~~~l~~ 224 (598)
++.|.+.++.....+ |.|...++....++... ....++.++ |++... +.|+- .++..+..
T Consensus 7 FE~ark~aea~y~~n-------P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~--I~P~~hdAlw~lGn 77 (186)
T PF06552_consen 7 FEHARKKAEAAYAKN-------PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALK--INPNKHDALWCLGN 77 (186)
T ss_dssp HHHHHHHHHHHHHH--------TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-------cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHh--cCCchHHHHHHHHH
Confidence 456667777766655 56666665555554443 332334444 444444 34443 56666666
Q ss_pred HHHhcC----C-------HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Q 047932 225 CFSHAD----D-------WNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIG 281 (598)
Q Consensus 225 ~~~~~~----~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 281 (598)
+|...+ + +++|.+.|++.... .|+..+|+.-+.... +|-.+..++.+.+
T Consensus 78 A~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~~------kap~lh~e~~~~~ 137 (186)
T PF06552_consen 78 AYTSLAFLTPDTAEAEEYFEKATEYFQKAVDE--DPNNELYRKSLEMAA------KAPELHMEIHKQG 137 (186)
T ss_dssp HHHHHHHH---HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHHH------THHHHHHHHHHSS
T ss_pred HHHHHHhhcCChHHHHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHHH------hhHHHHHHHHHHH
Confidence 665432 2 34444455544443 667777776666542 3455555555443
No 344
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=80.59 E-value=5.3 Score=22.47 Aligned_cols=27 Identities=15% Similarity=0.100 Sum_probs=17.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047932 463 TYNIMIHGLCNDGQMDKAHDLFLDMEA 489 (598)
Q Consensus 463 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 489 (598)
+|..+...|...|++++|...|++.++
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455566666667777777777766654
No 345
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=80.42 E-value=5 Score=22.13 Aligned_cols=30 Identities=17% Similarity=0.091 Sum_probs=24.2
Q ss_pred CChHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 047932 53 ITPNEALCIFDYMLRMHPSPPPVSSFNILFGC 84 (598)
Q Consensus 53 g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 84 (598)
|+++.|..+|++++...|. ++..|...+..
T Consensus 1 ~~~~~~r~i~e~~l~~~~~--~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPK--SVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCC--ChHHHHHHHHH
Confidence 5678899999999988775 88888877764
No 346
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=79.00 E-value=45 Score=29.59 Aligned_cols=84 Identities=17% Similarity=0.178 Sum_probs=64.6
Q ss_pred CCcccccCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhc-----
Q 047932 45 SGQGDINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINC----- 119 (598)
Q Consensus 45 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~----- 119 (598)
-|..+.....|+.|+..|.+++..+|. .+.-|..-+-.+.+..+++.+..--++.++. .||..--...++.
T Consensus 16 ~gnk~f~~k~y~~ai~~y~raI~~nP~--~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~s 91 (284)
T KOG4642|consen 16 QGNKCFIPKRYDDAIDCYSRAICINPT--VASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQS 91 (284)
T ss_pred ccccccchhhhchHHHHHHHHHhcCCC--cchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHhh
Confidence 455566677889999999999999987 5567777777888899999888777777764 6777766666554
Q ss_pred -cHHHHHHHHHHHH
Q 047932 120 -RIMEAAALFTKLR 132 (598)
Q Consensus 120 -~~~~a~~~~~~~~ 132 (598)
.+++|+..+.+..
T Consensus 92 ~~~~eaI~~Lqra~ 105 (284)
T KOG4642|consen 92 KGYDEAIKVLQRAY 105 (284)
T ss_pred ccccHHHHHHHHHH
Confidence 7778888777763
No 347
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=78.94 E-value=53 Score=30.18 Aligned_cols=61 Identities=10% Similarity=0.245 Sum_probs=29.5
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHhhHHHHHHHHHhCCCHHHHHHHH
Q 047932 214 PNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQ-GVHPNVVTFSVIVDELCKNGKMEEASRLL 274 (598)
Q Consensus 214 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 274 (598)
++..+...++..+++.++|..-.++++..... +...|...|...++.....|+..-..++.
T Consensus 200 l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI 261 (292)
T PF13929_consen 200 LTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKII 261 (292)
T ss_pred CChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHh
Confidence 34444445555555555555555555544333 23334445555555555555554444433
No 348
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=78.90 E-value=42 Score=33.13 Aligned_cols=41 Identities=17% Similarity=0.182 Sum_probs=30.3
Q ss_pred hcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHH
Q 047932 152 RTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVD 198 (598)
Q Consensus 152 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 198 (598)
..+.++...++++.+...+ .......++.-...|.+.|...
T Consensus 29 ~~~~~d~cl~~l~~l~t~~------~~~~~v~~n~av~~~~kt~~tq 69 (696)
T KOG2471|consen 29 NNSEFDRCLELLQELETRG------ESSGPVLHNRAVVSYYKTGCTQ 69 (696)
T ss_pred CCcchHHHHHHHHHHHhcc------ccccceeeehhhHHHHhcccch
Confidence 4678888999999998887 3344555777777888877654
No 349
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=78.87 E-value=66 Score=31.20 Aligned_cols=120 Identities=13% Similarity=0.063 Sum_probs=79.6
Q ss_pred HcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhccHHHHHHHHHH----HH----H--cCC
Q 047932 67 RMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCRIMEAAALFTK----LR----V--FGC 136 (598)
Q Consensus 67 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~a~~~~~~----~~----~--~~~ 136 (598)
+.+|. .+.+...+...+.++|+.+.|.+++++++-. +...+ ...|.. .. + ...
T Consensus 34 ~~~Py--HidtLlqls~v~~~~gd~~~A~~lleRALf~--------~e~~~-------~~~F~~~~~~~~~g~~rL~~~~ 96 (360)
T PF04910_consen 34 QKNPY--HIDTLLQLSEVYRQQGDHAQANDLLERALFA--------FERAF-------HPSFSPFRSNLTSGNCRLDYRR 96 (360)
T ss_pred HHCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------HHHHH-------HHHhhhhhcccccCccccCCcc
Confidence 45565 8889999999999999999999999988621 11000 001110 00 0 001
Q ss_pred CCCHhhHH---HHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHH-hcCCHHHHHHHHHHHhh
Q 047932 137 EPDVFTYN---TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVC-KEGFVDKAMELFLQMKD 209 (598)
Q Consensus 137 ~~~~~~~~---~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~A~~~~~~~~~ 209 (598)
.-+...|. ..+..+.+.|-+..|.++.+-+.+.+ ...|+..-..+|+.|+ +.++++--+++.+....
T Consensus 97 ~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLd------p~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 97 PENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLD------PDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred ccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC------CCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 11333333 34677889999999999999999987 2336766666777665 67778888888877654
No 350
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=78.84 E-value=53 Score=30.12 Aligned_cols=58 Identities=16% Similarity=0.146 Sum_probs=36.0
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047932 254 FSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTLMDGFCLTGRVNHAKELFVSM 312 (598)
Q Consensus 254 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 312 (598)
+....+.|..+|.+.+|.++.+..++.+ +.+...+..++..+...||--.+.+-++.+
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 3445556667777777777777666653 345566666667777777655555555544
No 351
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=78.75 E-value=62 Score=30.83 Aligned_cols=120 Identities=7% Similarity=-0.038 Sum_probs=75.0
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhccHHHHHHHHHHHHHcCCCCCH
Q 047932 61 IFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCRIMEAAALFTKLRVFGCEPDV 140 (598)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~a~~~~~~~~~~~~~~~~ 140 (598)
-|++.++.+|. |+.+|..++..--..-....-. ..-..+..+.-+.+++++++.++ .+.
T Consensus 7 el~~~v~~~P~--di~~Wl~li~~Qd~~~~~~~~~------------------~~~~~a~~E~klsilerAL~~np-~~~ 65 (321)
T PF08424_consen 7 ELNRRVRENPH--DIEAWLELIEFQDELFRLQSSS------------------KAERRALAERKLSILERALKHNP-DSE 65 (321)
T ss_pred HHHHHHHhCcc--cHHHHHHHHHHHHHhccccccc------------------hhhHHHHHHHHHHHHHHHHHhCC-CCH
Confidence 46677778886 9999999887643322111100 00000023445667777777642 456
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHh---cCCHHHHHHHHHHHh
Q 047932 141 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCK---EGFVDKAMELFLQMK 208 (598)
Q Consensus 141 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~~~ 208 (598)
..+..++..+.+..+.++..+.++++...+ +.+...|...++.... .-.++....+|.+..
T Consensus 66 ~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-------~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l 129 (321)
T PF08424_consen 66 RLLLGYLEEGEKVWDSEKLAKKWEELLFKN-------PGSPELWREYLDFRQSNFASFTVSDVRDVYEKCL 129 (321)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-------CCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHH
Confidence 667778888888888888899999998875 4567778777765544 223556666655544
No 352
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=78.61 E-value=1.7 Score=24.26 Aligned_cols=20 Identities=20% Similarity=0.272 Sum_probs=8.3
Q ss_pred HHHHhcCCHHHHHHHHHHHH
Q 047932 469 HGLCNDGQMDKAHDLFLDME 488 (598)
Q Consensus 469 ~~~~~~g~~~~A~~~~~~~~ 488 (598)
.++.+.|++++|.+.|++++
T Consensus 8 ~~~~~~g~~~~A~~~~~~~~ 27 (33)
T PF13174_consen 8 RCYYKLGDYDEAIEYFQRLI 27 (33)
T ss_dssp HHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHH
Confidence 33334444444444444433
No 353
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=78.50 E-value=8.2 Score=38.61 Aligned_cols=103 Identities=13% Similarity=-0.064 Sum_probs=75.2
Q ss_pred HHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 047932 401 LCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKA 480 (598)
Q Consensus 401 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 480 (598)
+...|+...|...+..+......-.-.....|.+...+.|..-.|-.++.+.+... .....++..+..++....+++.|
T Consensus 617 wr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a 695 (886)
T KOG4507|consen 617 WRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGA 695 (886)
T ss_pred eeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHH
Confidence 34568888999988887654322233345667778888888888999888877753 33566788889999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHH
Q 047932 481 HDLFLDMEAKGVEPDCVIFNTIMLG 505 (598)
Q Consensus 481 ~~~~~~~~~~~~~p~~~~~~~l~~~ 505 (598)
++.|+++.+.. +.+...-+.|...
T Consensus 696 ~~~~~~a~~~~-~~~~~~~~~l~~i 719 (886)
T KOG4507|consen 696 LEAFRQALKLT-TKCPECENSLKLI 719 (886)
T ss_pred HHHHHHHHhcC-CCChhhHHHHHHH
Confidence 99999998864 4456655555443
No 354
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=77.79 E-value=19 Score=31.29 Aligned_cols=75 Identities=11% Similarity=0.102 Sum_probs=48.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHhhHHHHHHH
Q 047932 185 NTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQG--VHPNVVTFSVIVDE 260 (598)
Q Consensus 185 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~ 260 (598)
+.-++.+.+.++..+++...++-.+... -|...-..++..++-.|+|++|..-++-.-... ..+...+|..++++
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkakP-tda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAKP-TDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCC-ccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 4455667777888888888777666532 366667778888888888888887777665432 12233455555543
No 355
>PRK09687 putative lyase; Provisional
Probab=77.74 E-value=60 Score=30.14 Aligned_cols=58 Identities=16% Similarity=0.086 Sum_probs=25.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 047932 390 DTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSR 454 (598)
Q Consensus 390 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 454 (598)
+..+-...+.++.+.|+. .|...+-...+.+ + .....+.++...|.. +|...+..+.+
T Consensus 205 ~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~ 262 (280)
T PRK09687 205 NEEIRIEAIIGLALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLY 262 (280)
T ss_pred ChHHHHHHHHHHHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHh
Confidence 444444444555555542 3333333333221 1 123444555555553 45555555554
No 356
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=77.65 E-value=1.1 Score=36.51 Aligned_cols=54 Identities=11% Similarity=0.157 Sum_probs=29.4
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 047932 257 IVDELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTLMDGFCLTGRVNHAKELFV 310 (598)
Q Consensus 257 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 310 (598)
++..+.+.+.+.....+++.+...+...+....+.++..|++.++.++..++++
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 344444555566666666666654444455566666666666655555555554
No 357
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=76.96 E-value=1e+02 Score=32.30 Aligned_cols=27 Identities=11% Similarity=0.141 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 047932 75 VSSFNILFGCLAKNKHYDTVLSLFKRLN 102 (598)
Q Consensus 75 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 102 (598)
+..|. .+..+.-+|.+++|..+++...
T Consensus 149 p~FW~-~v~~lvlrG~~~~a~~lL~~~s 175 (566)
T PF07575_consen 149 PDFWD-YVQRLVLRGLFDQARQLLRLHS 175 (566)
T ss_dssp HHHHH-HHHHHHHTT-HHHHHHHH-TTT
T ss_pred hhHHH-HHHHHHHcCCHHHHHHHHHhcc
Confidence 67787 5666777899999998885433
No 358
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=76.67 E-value=39 Score=27.47 Aligned_cols=51 Identities=12% Similarity=0.032 Sum_probs=25.1
Q ss_pred hcCChhHHHHHHHHHHhcCCCCccccCCCH-hHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 047932 152 RTGHTIVALNLFEEMANGNGEFGVVCKPDT-VTYNTIIDGVCKEGFVDKAMELFLQMKDE 210 (598)
Q Consensus 152 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 210 (598)
..++++++..+++.|.-.. |+. ..-..-...+...|++++|..+|+++.+.
T Consensus 22 ~~~d~~D~e~lLdALrvLr--------P~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLR--------PNLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred hcCCHHHHHHHHHHHHHhC--------CCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 3566666666666555432 221 11111223344556666666666666554
No 359
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=76.04 E-value=8.1 Score=23.75 Aligned_cols=21 Identities=29% Similarity=0.422 Sum_probs=8.9
Q ss_pred HHHHHhCCCHHHHHHHHHHHH
Q 047932 258 VDELCKNGKMEEASRLLDLMI 278 (598)
Q Consensus 258 ~~~~~~~g~~~~a~~~~~~~~ 278 (598)
..+|...|+.+.|.++++++.
T Consensus 6 A~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 6 ARAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred HHHHHHcCChHHHHHHHHHHH
Confidence 334444444444444444443
No 360
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=76.04 E-value=6 Score=24.31 Aligned_cols=26 Identities=12% Similarity=0.104 Sum_probs=21.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCC
Q 047932 80 ILFGCLAKNKHYDTVLSLFKRLNSTG 105 (598)
Q Consensus 80 ~l~~~~~~~g~~~~A~~~~~~~~~~~ 105 (598)
.++.+|...|+.+.|++++++++..|
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 46778888888888888888888654
No 361
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.76 E-value=97 Score=31.52 Aligned_cols=51 Identities=20% Similarity=0.077 Sum_probs=22.8
Q ss_pred HHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHH
Q 047932 402 CKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLC-KIGKLETAWELFQSL 452 (598)
Q Consensus 402 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~ 452 (598)
.+.|.+..|.++.+-+.+....-|+.....+|..|+ +..++.-.+++++..
T Consensus 353 ~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~ 404 (665)
T KOG2422|consen 353 AQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEP 404 (665)
T ss_pred HhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 444555555555554444433334444444444433 334444444444443
No 362
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=75.55 E-value=2.1 Score=38.73 Aligned_cols=62 Identities=16% Similarity=0.203 Sum_probs=50.1
Q ss_pred HHhcCCccccchhHHHHHHHhcccCCCCCChHHHHH----HHHHhCCCCCChhhHHHhhhcCccccchhhHhh
Q 047932 506 FIRNNETSKSSRGKLMSQMSSCWSMCFQPKTLICSI----SIMLQKDMSPGDTMFSTALLMDPDCSCDLESLI 574 (598)
Q Consensus 506 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~----~~~~~~~~~~a~~~~~~~l~~~P~~~~~~~~l~ 574 (598)
..+.|+.++|.+ +|+.+.. +.|+...... ....+.++-+|...|-+++.++|.|+.++.+-.
T Consensus 126 ~~~~Gk~ekA~~--lfeHAla-----laP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~ 191 (472)
T KOG3824|consen 126 SRKDGKLEKAMT--LFEHALA-----LAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRA 191 (472)
T ss_pred HHhccchHHHHH--HHHHHHh-----cCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhh
Confidence 456899999999 9999984 4677655444 556678899999999999999999999886653
No 363
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=75.36 E-value=71 Score=29.80 Aligned_cols=154 Identities=12% Similarity=0.122 Sum_probs=86.7
Q ss_pred CCcccccCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCCHHhHHHHHhc-
Q 047932 45 SGQGDINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAK----NKHYDTVLSLFKRLNSTGLFPDLYTHSILINC- 119 (598)
Q Consensus 45 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~- 119 (598)
.+......+++..|...+....... +......+...|.. ..+..+|.++|+.+...|..+-...+..+...
T Consensus 47 ~~~~~~~~~~~~~a~~~~~~a~~~~----~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~~~a~~~lg~~~~~G 122 (292)
T COG0790 47 NGAGSAYPPDYAKALKSYEKAAELG----DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGLAEALFNLGLMYANG 122 (292)
T ss_pred ccccccccccHHHHHHHHHHhhhcC----ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcccHHHHHhHHHHHhcC
Confidence 3445568889999999999886532 33455555555543 34578899999988877654333333333322
Q ss_pred -----cHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcC-------ChhHHHHHHHHHHhcCCCCccccCCCHhHHHHH
Q 047932 120 -----RIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTG-------HTIVALNLFEEMANGNGEFGVVCKPDTVTYNTI 187 (598)
Q Consensus 120 -----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-------~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 187 (598)
+..+|..+|+++.+.|..+-..+...+...|..-+ +...|...|.++...+ +......+
T Consensus 123 ~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---------~~~a~~~l 193 (292)
T COG0790 123 RGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---------NPDAQLLL 193 (292)
T ss_pred CCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---------CHHHHHHH
Confidence 78888888888888774432223444444443321 1224555555555443 23333333
Q ss_pred HHHHHh----cCCHHHHHHHHHHHhhCC
Q 047932 188 IDGVCK----EGFVDKAMELFLQMKDEN 211 (598)
Q Consensus 188 i~~~~~----~g~~~~A~~~~~~~~~~~ 211 (598)
...|.. ..+..+|...|....+.|
T Consensus 194 g~~y~~G~Gv~~d~~~A~~wy~~Aa~~g 221 (292)
T COG0790 194 GRMYEKGLGVPRDLKKAFRWYKKAAEQG 221 (292)
T ss_pred HHHHHcCCCCCcCHHHHHHHHHHHHHCC
Confidence 333322 234555666665555544
No 364
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=75.16 E-value=39 Score=26.75 Aligned_cols=109 Identities=16% Similarity=0.134 Sum_probs=64.9
Q ss_pred HHHHHHHHHHcCC-CCCCHHHHHHHHHHHHhc----CChhHHHHHHHHHHhC-----CCCCCHHhHHHHHhc--cHHHHH
Q 047932 58 ALCIFDYMLRMHP-SPPPVSSFNILFGCLAKN----KHYDTVLSLFKRLNST-----GLFPDLYTHSILINC--RIMEAA 125 (598)
Q Consensus 58 A~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~-----~~~p~~~~~~~ll~~--~~~~a~ 125 (598)
..+.|+..+.... ...+...|...+.....+ +.-.....++++++.. ....|......-+.. ..+++.
T Consensus 4 ~r~~~e~~i~~~~~~dDPL~~w~~yI~w~~~~~p~~~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~~~~~~ 83 (126)
T PF08311_consen 4 QRQEFEEQIRSYEEGDDPLDPWLRYIKWIEENYPSGGKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYADLSSDPR 83 (126)
T ss_dssp HHHHHHHHHHCCGGSS-CHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTTBSHHH
T ss_pred HHHHHHHHHHHccCCCCChHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHHccCHH
Confidence 3444555444333 223455666555544432 3445555666655433 123344444443333 444899
Q ss_pred HHHHHHHHcCCCCC-HhhHHHHHHHHHhcCChhHHHHHHHHH
Q 047932 126 ALFTKLRVFGCEPD-VFTYNTLINGLCRTGHTIVALNLFEEM 166 (598)
Q Consensus 126 ~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 166 (598)
++|..|...|+... +..|......+...|++++|.++|+..
T Consensus 84 ~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~G 125 (126)
T PF08311_consen 84 EIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLG 125 (126)
T ss_dssp HHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 99999988776544 456888999999999999999999864
No 365
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=75.01 E-value=79 Score=30.12 Aligned_cols=118 Identities=10% Similarity=0.064 Sum_probs=65.2
Q ss_pred HHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH---cCCHHHHHHHH
Q 047932 373 EHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCK---IGKLETAWELF 449 (598)
Q Consensus 373 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~ 449 (598)
+.-+.+++++++.+ +.+......++..+.+..+.++..+-|+++.... +-+...|..++..... .-.++....+|
T Consensus 48 E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y 125 (321)
T PF08424_consen 48 ERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRDVY 125 (321)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence 34455566655553 3455566666666666666666666666666543 2255566666555443 22344555554
Q ss_pred HHHHh------CCC------CCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 047932 450 QSLSR------VGL------LPN-----VVTYNIMIHGLCNDGQMDKAHDLFLDMEAKGV 492 (598)
Q Consensus 450 ~~~~~------~~~------~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 492 (598)
.+.++ .+. .++ ...+..+...+..+|-.+.|+.+++.+++.++
T Consensus 126 ~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 126 EKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 44332 111 011 11233334445578899999999988887653
No 366
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=74.69 E-value=54 Score=28.11 Aligned_cols=55 Identities=9% Similarity=0.058 Sum_probs=23.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047932 434 DGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEAK 490 (598)
Q Consensus 434 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 490 (598)
......|.+++|+.+++.....+.. ......-.+.+...|+-++|+.-|++.+..
T Consensus 134 rvq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDill~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 134 RVQLQQKKADAALKTLDTIKEESWA--AIVAELRGDILLAKGDKQEARAAYEKALES 188 (207)
T ss_pred HHHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhHHHHcCchHHHHHHHHHHHHc
Confidence 3444445555555554444332111 111222334444555555555555555443
No 367
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=72.58 E-value=1.3 Score=36.11 Aligned_cols=84 Identities=17% Similarity=0.169 Sum_probs=53.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCC
Q 047932 187 IIDGVCKEGFVDKAMELFLQMKDENINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGK 266 (598)
Q Consensus 187 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 266 (598)
++..+.+.+.+.....+++.+...+...+....+.++..|++.++.+...++++.. +..-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcch
Confidence 45666677778888888888886655556777888888888887767777766511 11223345666666666
Q ss_pred HHHHHHHHHHH
Q 047932 267 MEEASRLLDLM 277 (598)
Q Consensus 267 ~~~a~~~~~~~ 277 (598)
++++.-++.++
T Consensus 86 ~~~a~~Ly~~~ 96 (143)
T PF00637_consen 86 YEEAVYLYSKL 96 (143)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHHHc
Confidence 66666655543
No 368
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=72.10 E-value=7.2 Score=20.82 Aligned_cols=29 Identities=17% Similarity=0.203 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 047932 76 SSFNILFGCLAKNKHYDTVLSLFKRLNST 104 (598)
Q Consensus 76 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 104 (598)
..|..+...+...|+++.|...|++.++.
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 35677888888889999999999888754
No 369
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=72.02 E-value=62 Score=28.78 Aligned_cols=118 Identities=8% Similarity=-0.065 Sum_probs=70.2
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCcCH-HHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHH-HHHHHHHHHHHcCCHH
Q 047932 366 LFEVHQVEHALKLFDEMQHNDVAADT-YIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDII-SYSCLIDGLCKIGKLE 443 (598)
Q Consensus 366 ~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~ 443 (598)
|.....++.|+..|.+.+.. .|+. ..|+.-+..+.+..+++.+..--.+.++. .|+.. ....+..+......++
T Consensus 20 ~f~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred ccchhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHhhcccc
Confidence 45556677888877777664 3443 44555666677777887777766666654 34433 3344566666777788
Q ss_pred HHHHHHHHHHh----CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047932 444 TAWELFQSLSR----VGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDM 487 (598)
Q Consensus 444 ~A~~~~~~~~~----~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 487 (598)
+|+..+++..+ ..+.+-...+..|..+--..=...+..++.++.
T Consensus 96 eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~ 143 (284)
T KOG4642|consen 96 EAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQEL 143 (284)
T ss_pred HHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHh
Confidence 88888877643 223333445555555444444445555555444
No 370
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=71.28 E-value=69 Score=29.25 Aligned_cols=87 Identities=16% Similarity=0.055 Sum_probs=43.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH----
Q 047932 363 FLGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCK---- 438 (598)
Q Consensus 363 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 438 (598)
|++++..+++.++..+.-+--+.--..-+.+...-|-.|.+.|.+....++-.......-.-+..-|..++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 5666666777666655433322211112233334444566666666666665555432112222335555544443
Q ss_pred -cCCHHHHHHHH
Q 047932 439 -IGKLETAWELF 449 (598)
Q Consensus 439 -~g~~~~A~~~~ 449 (598)
.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 46666666655
No 371
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.18 E-value=75 Score=28.20 Aligned_cols=48 Identities=13% Similarity=-0.019 Sum_probs=25.3
Q ss_pred cCCChHHHHHHHHHHHHcC-----CCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 047932 51 NLITPNEALCIFDYMLRMH-----PSPPPVSSFNILFGCLAKNKHYDTVLSLFK 99 (598)
Q Consensus 51 ~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 99 (598)
-.+.+++|.++|.++.... .. ..-.+|......+.+.|.-.+|-..|-
T Consensus 26 g~~k~eeAadl~~~Aan~yklaK~w~-~AG~aflkaA~~h~k~~skhDaat~Yv 78 (288)
T KOG1586|consen 26 GSNKYEEAAELYERAANMYKLAKNWS-AAGDAFLKAADLHLKAGSKHDAATTYV 78 (288)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHhcCCchhHHHHHH
Confidence 4568999999998874321 11 122334444445555555444444333
No 372
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=70.83 E-value=82 Score=28.49 Aligned_cols=51 Identities=10% Similarity=0.087 Sum_probs=31.9
Q ss_pred hCCCHHHHHHHHHHHHhcCCCcCH---HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047932 263 KNGKMEEASRLLDLMIQIGVHPNT---FVYNTLMDGFCLTGRVNHAKELFVSME 313 (598)
Q Consensus 263 ~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~ 313 (598)
+..+.++|+.-|++.++....... .....++....+.|++++....+.++.
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlL 92 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLL 92 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 344677788888887765322222 234456667777777777777776664
No 373
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=70.56 E-value=14 Score=27.35 Aligned_cols=55 Identities=15% Similarity=0.054 Sum_probs=35.9
Q ss_pred ccCCChHHHHHHHHHHHH----cCCCC---CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 047932 50 INLITPNEALCIFDYMLR----MHPSP---PPVSSFNILFGCLAKNKHYDTVLSLFKRLNST 104 (598)
Q Consensus 50 ~~~g~~~~A~~~~~~~~~----~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 104 (598)
++.||+.+|.+.+.+... ..... .-..+...++......|++++|...+++.++.
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 367888888666555543 32220 01233445667778899999999999988753
No 374
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=70.30 E-value=58 Score=26.55 Aligned_cols=20 Identities=30% Similarity=0.537 Sum_probs=10.4
Q ss_pred HHhCCCHHHHHHHHHHHHhc
Q 047932 261 LCKNGKMEEASRLLDLMIQI 280 (598)
Q Consensus 261 ~~~~g~~~~a~~~~~~~~~~ 280 (598)
+...|++.+|.++|+.+.+.
T Consensus 54 ~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 54 LIARGNYDEAARILRELLSS 73 (153)
T ss_pred HHHcCCHHHHHHHHHhhhcc
Confidence 44555555555555555443
No 375
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=69.88 E-value=1.3e+02 Score=30.28 Aligned_cols=177 Identities=15% Similarity=0.147 Sum_probs=79.0
Q ss_pred CHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 047932 250 NVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLIN 329 (598)
Q Consensus 250 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 329 (598)
|......++..+....+..-...+..+|+..| .+...+..++.+|... ..+.-..+++++.+..+ .|++.-..|..
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHHHH
Confidence 44444455555555555555556666666543 2445556666666555 33445555555554431 13333333333
Q ss_pred HHHhcCCHHHHHHHHHHHccCCCCC--C---HHHHHHHHHHHHhcCCHHHHHHHHHHHhhC-CCCcCHHHHHHHHHHHHH
Q 047932 330 GYCKTKNVEEALNLYRKMLPKGIRP--T---VVTYSTLFLGLFEVHQVEHALKLFDEMQHN-DVAADTYIYNTFIDGLCK 403 (598)
Q Consensus 330 ~~~~~~~~~~A~~~~~~~~~~~~~~--~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~ 403 (598)
.|-+ ++.+.+...|.++...-++. + ...|..+... -..+.+....+...+... |...-...+..+-.-|..
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 3333 55555665655554431110 0 0122222211 023444444444444332 212223333333344555
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 047932 404 NGFVLEALELFCAIGNSKYELDIISYSCLID 434 (598)
Q Consensus 404 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 434 (598)
..++.+|++++..+.+.+ ..|...-..++.
T Consensus 218 ~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~ 247 (711)
T COG1747 218 NENWTEAIRILKHILEHD-EKDVWARKEIIE 247 (711)
T ss_pred ccCHHHHHHHHHHHhhhc-chhhhHHHHHHH
Confidence 556666666666555443 224444333333
No 376
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=66.93 E-value=1.1e+02 Score=28.51 Aligned_cols=85 Identities=14% Similarity=0.102 Sum_probs=42.3
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---------
Q 047932 409 EALELFCAIGNSKYELDIISYSCLIDGLCK----IGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDG--------- 475 (598)
Q Consensus 409 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g--------- 475 (598)
.|...|.++...+ +......+...|.. ..++++|...|....+.|. ......+. .+...|
T Consensus 173 ~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~---~~a~~~~~-~~~~~g~g~~~~~~~ 245 (292)
T COG0790 173 KALYLYRKAAELG---NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD---GAACYNLG-LMYLNGEGVKKAAFL 245 (292)
T ss_pred hHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHH-HHHhcCCCchhhhhc
Confidence 5666666665544 33333444444432 2366777777777766553 22222222 333333
Q ss_pred ------CHHHHHHHHHHHHHCCCCCCHHHHH
Q 047932 476 ------QMDKAHDLFLDMEAKGVEPDCVIFN 500 (598)
Q Consensus 476 ------~~~~A~~~~~~~~~~~~~p~~~~~~ 500 (598)
+...|...+......+.........
T Consensus 246 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 276 (292)
T COG0790 246 TAAKEEDKKQALEWLQKACELGFDNACEALR 276 (292)
T ss_pred ccccCCCHHHHHHHHHHHHHcCChhHHHHHH
Confidence 5556666666666555433333333
No 377
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=64.85 E-value=24 Score=22.76 Aligned_cols=32 Identities=19% Similarity=0.003 Sum_probs=20.2
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHh
Q 047932 79 NILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYT 112 (598)
Q Consensus 79 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 112 (598)
..++.++.+.|++++|++..+.+++. .|+...
T Consensus 5 Y~lAig~ykl~~Y~~A~~~~~~lL~~--eP~N~Q 36 (53)
T PF14853_consen 5 YYLAIGHYKLGEYEKARRYCDALLEI--EPDNRQ 36 (53)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHH--TTS-HH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhh--CCCcHH
Confidence 34555667778888888877777765 565443
No 378
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=64.75 E-value=1.1e+02 Score=27.92 Aligned_cols=28 Identities=25% Similarity=0.196 Sum_probs=19.0
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHH
Q 047932 178 KPDTVTYNTIIDGVCKEGFVDKAMELFL 205 (598)
Q Consensus 178 ~~~~~~~~~li~~~~~~g~~~~A~~~~~ 205 (598)
.-|+.....+...|.+.|++.+|...|-
T Consensus 87 ~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl 114 (260)
T PF04190_consen 87 FGDPELHHLLAEKLWKEGNYYEAERHFL 114 (260)
T ss_dssp T--HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 3467777888888888888888776663
No 379
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=64.40 E-value=47 Score=29.27 Aligned_cols=56 Identities=11% Similarity=0.086 Sum_probs=50.2
Q ss_pred ccccCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 047932 48 GDINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTG 105 (598)
Q Consensus 48 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 105 (598)
.+.+.||.+.|.+++.+++..-|. ....|..+...--+.|+++.|.+.|++.++..
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~--w~~gwfR~g~~~ekag~~daAa~a~~~~L~ld 59 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPE--WAAGWFRLGEYTEKAGEFDAAAAAYEEVLELD 59 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCch--hhhhhhhcchhhhhcccHHHHHHHHHHHHcCC
Confidence 456889999999999999998876 88899999999999999999999999998763
No 380
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=64.29 E-value=1.2e+02 Score=27.86 Aligned_cols=87 Identities=11% Similarity=0.047 Sum_probs=47.0
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh----
Q 047932 258 VDELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCK---- 333 (598)
Q Consensus 258 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 333 (598)
|.+++..+++.+++...-+--+..-+.-..+...-|-.|.+.|++..+.++-..-....-..+...|..++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 4566666666666555444333222223344555555666777766666666555543222233445555555543
Q ss_pred -cCCHHHHHHHH
Q 047932 334 -TKNVEEALNLY 344 (598)
Q Consensus 334 -~~~~~~A~~~~ 344 (598)
.|.+++|.++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 56677776665
No 381
>PRK11619 lytic murein transglycosylase; Provisional
Probab=64.04 E-value=2e+02 Score=30.55 Aligned_cols=22 Identities=5% Similarity=0.012 Sum_probs=14.1
Q ss_pred HHHHhcCCccccchhHHHHHHHhc
Q 047932 504 LGFIRNNETSKSSRGKLMSQMSSC 527 (598)
Q Consensus 504 ~~~~~~g~~~~A~~~~~~~~~~~~ 527 (598)
..+...|+...|.. .+..+.+.
T Consensus 415 ~~L~~~g~~~~a~~--ew~~~~~~ 436 (644)
T PRK11619 415 RELMYWNMDNTARS--EWANLVAS 436 (644)
T ss_pred HHHHHCCCHHHHHH--HHHHHHhc
Confidence 34556677777777 77666543
No 382
>PRK10941 hypothetical protein; Provisional
Probab=63.71 E-value=32 Score=31.61 Aligned_cols=66 Identities=11% Similarity=-0.039 Sum_probs=54.4
Q ss_pred HHHHhhccCCcccccCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 047932 37 FLKERSKSSGQGDINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNST 104 (598)
Q Consensus 37 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 104 (598)
.+.+........+.+.++++.|+.+.+.++...|. ++.-+.--+-.|.+.|.+..|..=++..+..
T Consensus 179 il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~--dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 179 VIRKLLDTLKAALMEEKQMELALRASEALLQFDPE--DPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 44444444455567899999999999999999987 8888888888899999999999999888765
No 383
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.54 E-value=2.1e+02 Score=30.50 Aligned_cols=75 Identities=12% Similarity=0.068 Sum_probs=46.9
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHH
Q 047932 141 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTYN 220 (598)
Q Consensus 141 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 220 (598)
.....+|..+.-.|+++.|-...-.|... +..-|.-.+..+...++... ++.-+.......+...|.
T Consensus 393 kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----------~~~eWe~~V~~f~e~~~l~~---Ia~~lPt~~~rL~p~vYe 459 (846)
T KOG2066|consen 393 KVGKTYIDHLLFEGKYDEAASLCPKMLGN----------NAAEWELWVFKFAELDQLTD---IAPYLPTGPPRLKPLVYE 459 (846)
T ss_pred HHHHHHHHHHHhcchHHHHHhhhHHHhcc----------hHHHHHHHHHHhccccccch---hhccCCCCCcccCchHHH
Confidence 34566777778888888888888877654 36666666666666655443 223333322224566777
Q ss_pred HHHHHHHh
Q 047932 221 SLIHCFSH 228 (598)
Q Consensus 221 ~l~~~~~~ 228 (598)
.++..+..
T Consensus 460 mvLve~L~ 467 (846)
T KOG2066|consen 460 MVLVEFLA 467 (846)
T ss_pred HHHHHHHH
Confidence 77777666
No 384
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=62.92 E-value=30 Score=30.71 Aligned_cols=70 Identities=14% Similarity=0.038 Sum_probs=60.8
Q ss_pred hHHHHHHHhhccCCcccccCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 047932 33 SIEKFLKERSKSSGQGDINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNST 104 (598)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 104 (598)
.+...+..+...|+++++..|++-++++.-...++.+|. ++.+|..-+.+.+..=+..+|..-|..++..
T Consensus 224 eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~--nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 224 ELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPG--NVKAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred HHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCc--hHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 444566777788999999999999999999999999987 9999999998888888888999888888865
No 385
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.61 E-value=1.9e+02 Score=29.63 Aligned_cols=165 Identities=15% Similarity=0.099 Sum_probs=99.0
Q ss_pred cCCChHHHHHHHHHHHHcCCC----------CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhcc
Q 047932 51 NLITPNEALCIFDYMLRMHPS----------PPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCR 120 (598)
Q Consensus 51 ~~g~~~~A~~~~~~~~~~~~~----------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~ 120 (598)
....|.+|...|.-+...++. |..+.+...+..++..+|+.+-|.++.++.+=
T Consensus 250 hs~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly----------------- 312 (665)
T KOG2422|consen 250 HSNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLY----------------- 312 (665)
T ss_pred cchHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHH-----------------
Confidence 556789999999887765443 34667778888899999999988888877651
Q ss_pred HHHHHHHHHHHHHcCCCC-------------CHhhHHH---HHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHH
Q 047932 121 IMEAAALFTKLRVFGCEP-------------DVFTYNT---LINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTY 184 (598)
Q Consensus 121 ~~~a~~~~~~~~~~~~~~-------------~~~~~~~---l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (598)
.|+.+..-.+.| +...|.+ .+..+.+.|-+..|.+..+-+.+.+ ...|+...
T Consensus 313 ------~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLd------p~eDPl~~ 380 (665)
T KOG2422|consen 313 ------VFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLD------PSEDPLGI 380 (665)
T ss_pred ------HHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcC------CcCCchhH
Confidence 112111111111 1222222 2445567788888888888887765 22366666
Q ss_pred HHHHHHHH-hcCCHHHHHHHHHHHhhC---CCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHH
Q 047932 185 NTIIDGVC-KEGFVDKAMELFLQMKDE---NINPNVVTYNSLIHCFSHADD---WNEAKRLFIKMMD 244 (598)
Q Consensus 185 ~~li~~~~-~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~ 244 (598)
..+|+.|+ +..++.-.+++++..... ..-|+-..-.+|...|.+... -+.|...+.+...
T Consensus 381 l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~ 447 (665)
T KOG2422|consen 381 LYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSLALARFFLRKNEEDDRQSALNALLQALK 447 (665)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHHHHHHHHHhcCChhhHHHHHHHHHHHHH
Confidence 67777665 556677777777666432 233444444455555555544 3444444444443
No 386
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=62.58 E-value=69 Score=28.50 Aligned_cols=105 Identities=19% Similarity=0.166 Sum_probs=51.6
Q ss_pred ccccCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhccHHHHHHH
Q 047932 48 GDINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCRIMEAAAL 127 (598)
Q Consensus 48 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~a~~~ 127 (598)
+++..|+++.|+++.+.+++.+.. -|.-|..-...++ .++..+......+.|...++.... .
T Consensus 92 W~~D~Gd~~~AL~ia~yAI~~~l~--~Pd~f~R~~~t~v----aeev~~~A~~~~~ag~~~e~~~~~------------~ 153 (230)
T PHA02537 92 WRFDIGDFDGALEIAEYALEHGLT--MPDQFRRTLANFV----AEEVANAALKAASAGESVEPYFLR------------V 153 (230)
T ss_pred eeeeccCHHHHHHHHHHHHHcCCC--CCccccCCchHHH----HHHHHHHHHHHHHcCCCCChHHHH------------H
Confidence 446777777888777777776543 2222221111111 233334444444444333333221 1
Q ss_pred HHHHHH-cCCCCCHh---hHHHHHHHHH---------hcCChhHHHHHHHHHHhcCC
Q 047932 128 FTKLRV-FGCEPDVF---TYNTLINGLC---------RTGHTIVALNLFEEMANGNG 171 (598)
Q Consensus 128 ~~~~~~-~~~~~~~~---~~~~l~~~~~---------~~g~~~~A~~~~~~~~~~~~ 171 (598)
+..+.. .+. ||.. .|..+...+. ..++...|..++++....++
T Consensus 154 ~~~l~~~~dm-pd~vrAKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~ 209 (230)
T PHA02537 154 FLDLTTEWDM-PDEVRAKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLND 209 (230)
T ss_pred HHHHHhcCCC-ChHHHHHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCC
Confidence 222221 222 2322 3444555453 34567788889888888763
No 387
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=62.47 E-value=66 Score=28.40 Aligned_cols=52 Identities=13% Similarity=0.137 Sum_probs=36.0
Q ss_pred hHHHHHHHHHHHHcCCCCC----CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 047932 55 PNEALCIFDYMLRMHPSPP----PVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGL 106 (598)
Q Consensus 55 ~~~A~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 106 (598)
+..|++.|..+......|. .......++....+.|++++|...|.+++..+-
T Consensus 141 l~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 141 LRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKK 196 (214)
T ss_pred HHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence 4568888887776543321 234455666777788999999999999887643
No 388
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=62.12 E-value=64 Score=25.32 Aligned_cols=45 Identities=9% Similarity=0.104 Sum_probs=26.0
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047932 445 AWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEA 489 (598)
Q Consensus 445 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 489 (598)
..+-++.+...++.|+......-+++|.+-+|+..|+++|+-...
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 334444455555566666666666666666666666666655544
No 389
>PRK10941 hypothetical protein; Provisional
Probab=62.06 E-value=58 Score=29.94 Aligned_cols=59 Identities=12% Similarity=-0.049 Sum_probs=33.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccccchhHHHHHHHhc
Q 047932 466 IMIHGLCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFIRNNETSKSSRGKLMSQMSSC 527 (598)
Q Consensus 466 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 527 (598)
.+-.+|.+.++++.|+++.+.++... |.++.-+.--+-.|.+.|.+..|.. =++..++.
T Consensus 186 nLK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~--DL~~fl~~ 244 (269)
T PRK10941 186 TLKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALS--DLSYFVEQ 244 (269)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHH--HHHHHHHh
Confidence 34445556666666666666666543 4445555555555666666666666 55555544
No 390
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.39 E-value=2.4e+02 Score=30.54 Aligned_cols=272 Identities=13% Similarity=0.067 Sum_probs=0.0
Q ss_pred ccccCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhccHHHHHHH
Q 047932 48 GDINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCRIMEAAAL 127 (598)
Q Consensus 48 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~a~~~ 127 (598)
+++..|+|+.|++.-+.- |. .--..+..-+..+.+.++|..|.++|-++. .|=.......+..+-+++++.
T Consensus 367 ~yLd~g~y~kAL~~ar~~----p~-~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~----~~FEEVaLKFl~~~~~~~L~~ 437 (911)
T KOG2034|consen 367 TYLDKGEFDKALEIARTR----PD-ALETVLLKQADFLFQDKEYLRAAEIYAETL----SSFEEVALKFLEINQERALRT 437 (911)
T ss_pred HHHhcchHHHHHHhccCC----HH-HHHHHHHHHHHHHHhhhHHHHHHHHHHHhh----hhHHHHHHHHHhcCCHHHHHH
Q ss_pred HHHHHHcCCCCCHhhHHHHHHHHH------hcCChh---------------HHHHHHHHHHhcCCCCccccCCCHhHHHH
Q 047932 128 FTKLRVFGCEPDVFTYNTLINGLC------RTGHTI---------------VALNLFEEMANGNGEFGVVCKPDTVTYNT 186 (598)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~l~~~~~------~~g~~~---------------~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (598)
|-.=.-.+++|.-.+-..++.... +.++.+ ...+-|..... ...+...+.+
T Consensus 438 ~L~KKL~~lt~~dk~q~~~Lv~WLlel~L~~Ln~l~~~de~~~en~~~~~~~~~re~~~~~~--------~~~~~~nret 509 (911)
T KOG2034|consen 438 FLDKKLDRLTPEDKTQRDALVTWLLELYLEQLNDLDSTDEEALENWRLEYDEVQREFSKFLV--------LHKDELNRET 509 (911)
T ss_pred HHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhcccccChhHHHHHHHHHHHHHHHHHHHHH--------hhHHhhhHHH
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH-------------------------
Q 047932 187 IIDGVCKEGFVDKAMELFLQMKDENINPNVVTYNSLIHCFSHADDWNEAKRLFIK------------------------- 241 (598)
Q Consensus 187 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~------------------------- 241 (598)
....+...|+.+....+-.-+.. |..++..++..+.+++|++++..
T Consensus 510 v~~l~~~~~~~e~ll~fA~l~~d---------~~~vv~~~~q~e~yeeaLevL~~~~~~el~yk~ap~Li~~~p~~tV~~ 580 (911)
T KOG2034|consen 510 VYQLLASHGRQEELLQFANLIKD---------YEFVVSYWIQQENYEEALEVLLNQRNPELFYKYAPELITHSPKETVSA 580 (911)
T ss_pred HHHHHHHccCHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHhhhHHHhcCcHHHHHH
Q ss_pred HHHCCCCCCHhhHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 047932 242 MMDQGVHPNVVTFSVIVDELCKN---GKMEEASRLLDLMIQIGVHPNTFVYNTLMDGFCLTGRVNHAKELFVSMESNGCM 318 (598)
Q Consensus 242 ~~~~~~~~~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 318 (598)
....+-.........++..+.+. .....+..+++.....-...+...+|.++..|+...+-+.-..+-......+.
T Consensus 581 wm~~~d~~~~~li~~~L~~~~~~~~~~~~~~~i~yl~f~~~~l~~~~~~ihn~ll~lya~~~~~~ll~~le~~~~~~~~- 659 (911)
T KOG2034|consen 581 WMAQKDLDPNRLIPPILSYFSNWHSEYEENQAIRYLEFCIEVLGMTNPAIHNSLLHLYAKHERDDLLLYLEIIKFMKSR- 659 (911)
T ss_pred HHHccccCchhhhHHHHHHHhcCCccccHHHHHHHHHHHHHhccCcCHHHHHHHHHHhhcCCccchHHHHHHHhhcccc-
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 047932 319 HDVVSYTTLINGYCKTKNVEEALNLYRKM 347 (598)
Q Consensus 319 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 347 (598)
........++.|.+.+.-..+..++..|
T Consensus 660 -~~YDl~~alRlc~~~~~~ra~V~l~~~l 687 (911)
T KOG2034|consen 660 -VHYDLDYALRLCLKFKKTRACVFLLCML 687 (911)
T ss_pred -ceecHHHHHHHHHHhCccceeeeHHHHH
No 391
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=58.60 E-value=38 Score=24.03 Aligned_cols=14 Identities=14% Similarity=0.117 Sum_probs=5.7
Q ss_pred HHHHHhcCCHHHHH
Q 047932 468 IHGLCNDGQMDKAH 481 (598)
Q Consensus 468 ~~~~~~~g~~~~A~ 481 (598)
+.+|+..|++.+++
T Consensus 50 ~qA~~e~Gkyr~~L 63 (80)
T PF10579_consen 50 IQAHMEWGKYREML 63 (80)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444433
No 392
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=58.24 E-value=14 Score=26.02 Aligned_cols=51 Identities=12% Similarity=0.051 Sum_probs=37.3
Q ss_pred cccCCChHHHHHHHHHHHHcCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHH
Q 047932 49 DINLITPNEALCIFDYMLRMHPSPPP-VSSFNILFGCLAKNKHYDTVLSLFK 99 (598)
Q Consensus 49 ~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~ 99 (598)
+......++|+..|..+++..+.+++ ..++..+++++..-|++.++++.--
T Consensus 16 LY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~ 67 (80)
T PF10579_consen 16 LYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFAL 67 (80)
T ss_pred HhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567789999999999987766322 2345577788888899888776653
No 393
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=56.78 E-value=1.7e+02 Score=27.43 Aligned_cols=174 Identities=17% Similarity=0.193 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHCCCCC-------------CHhhHHHHHHHHHhCCCHHHHHHHHHHHHhc-CCCcCHHHHHHHHHH
Q 047932 230 DDWNEAKRLFIKMMDQGVHP-------------NVVTFSVIVDELCKNGKMEEASRLLDLMIQI-GVHPNTFVYNTLMDG 295 (598)
Q Consensus 230 ~~~~~a~~~~~~~~~~~~~~-------------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~ 295 (598)
++.+....++..+...++.| |...++.+... +..++++-.+..++..+. |-.--...+.....-
T Consensus 36 ~~~~~~e~l~~~Ird~~Map~Ye~lce~~~i~~D~~~l~~m~~~--neeki~eld~~iedaeenlGE~ev~ea~~~kaeY 113 (393)
T KOG0687|consen 36 QKAAAREKLLAAIRDEDMAPLYEYLCESLVIKLDQDLLNSMKKA--NEEKIKELDEKIEDAEENLGESEVREAMLRKAEY 113 (393)
T ss_pred cCHHHHHHHHHHHHhcccchHHHHHHhhcceeccHHHHHHHHHh--hHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Q ss_pred HHhcCCHHHHHHHHHHHHHC----CCCCChhhHHH-HHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHHH--HHh
Q 047932 296 FCLTGRVNHAKELFVSMESN----GCMHDVVSYTT-LINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLG--LFE 368 (598)
Q Consensus 296 ~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~-l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~--~~~ 368 (598)
|++.||.+.|.+.+....+. |...|+..+.. +.-.|....-..+.++..+.+.+.|..-+...-...-++ |..
T Consensus 114 ycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKvY~Gly~ms 193 (393)
T KOG0687|consen 114 YCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKVYQGLYCMS 193 (393)
T ss_pred HHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHHHHHHHHHH
Q ss_pred cCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcC
Q 047932 369 VHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNG 405 (598)
Q Consensus 369 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 405 (598)
..++.+|-.+|-+....-.......|..++..-.-.|
T Consensus 194 vR~Fk~Aa~Lfld~vsTFtS~El~~Y~~~v~Ytv~~g 230 (393)
T KOG0687|consen 194 VRNFKEAADLFLDSVSTFTSYELMSYETFVRYTVITG 230 (393)
T ss_pred HHhHHHHHHHHHHHcccccceecccHHHHHHHHHHHh
No 394
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=56.78 E-value=6.8 Score=36.42 Aligned_cols=120 Identities=13% Similarity=-0.015 Sum_probs=72.6
Q ss_pred HHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHH
Q 047932 401 LCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNV-VTYNIMIHGLCNDGQMDK 479 (598)
Q Consensus 401 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~ 479 (598)
....|.++.|++.|...+... ++....|..-..++.+.+++..|++-+....+. .||. .-|-.-..+....|+|.+
T Consensus 124 Aln~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--n~Dsa~~ykfrg~A~rllg~~e~ 200 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI--NPDSAKGYKFRGYAERLLGNWEE 200 (377)
T ss_pred HhcCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhcc--CcccccccchhhHHHHHhhchHH
Confidence 345677888888887777654 445556666667777778888888777777663 4442 233333344445678888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccccchhHHHHHHHhc
Q 047932 480 AHDLFLDMEAKGVEPDCVIFNTIMLGFIRNNETSKSSRGKLMSQMSSC 527 (598)
Q Consensus 480 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 527 (598)
|...+....+.++.+....|. -...-+.+..++-.+ .+++..+.
T Consensus 201 aa~dl~~a~kld~dE~~~a~l--KeV~p~a~ki~e~~~--k~er~~~e 244 (377)
T KOG1308|consen 201 AAHDLALACKLDYDEANSATL--KEVFPNAGKIEEHRR--KYERAREE 244 (377)
T ss_pred HHHHHHHHHhccccHHHHHHH--HHhccchhhhhhchh--HHHHHHHH
Confidence 888888877766555444332 233444455555444 45544433
No 395
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=56.36 E-value=75 Score=24.98 Aligned_cols=47 Identities=13% Similarity=0.161 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 047932 123 EAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANG 169 (598)
Q Consensus 123 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 169 (598)
+..+-++.+...++.|+..+...-+.++-+-+|+..|..+|+-+...
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 44555666667788899999999999999999999999999988765
No 396
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=55.33 E-value=83 Score=23.25 Aligned_cols=24 Identities=8% Similarity=-0.046 Sum_probs=16.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 047932 466 IMIHGLCNDGQMDKAHDLFLDMEA 489 (598)
Q Consensus 466 ~l~~~~~~~g~~~~A~~~~~~~~~ 489 (598)
.+.......|++++|...+++.++
T Consensus 46 ~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 46 NLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHH
Confidence 344555667888888877777764
No 397
>PRK11619 lytic murein transglycosylase; Provisional
Probab=55.10 E-value=2.9e+02 Score=29.46 Aligned_cols=202 Identities=8% Similarity=-0.058 Sum_probs=95.0
Q ss_pred CCHHHHHHHHHHHHhcC-CCcCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 047932 265 GKMEEASRLLDLMIQIG-VHPNT--FVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEAL 341 (598)
Q Consensus 265 g~~~~a~~~~~~~~~~~-~~~~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 341 (598)
.+.+.|..++....... +.+.. .+...+.......+..+++...++...... .+......-+......++++.+.
T Consensus 255 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~~ 332 (644)
T PRK11619 255 QDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGLN 332 (644)
T ss_pred hCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHHH
Confidence 34466666666553322 21111 122223222222222445555555433221 23333444444455667777777
Q ss_pred HHHHHHccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCC
Q 047932 342 NLYRKMLPKGIRPTVVTYSTLFLGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSK 421 (598)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 421 (598)
..+..|.... .-.....--+..++...|+.++|..+|..+... .+ .|..+. ..+.|..-. . . ...
T Consensus 333 ~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~---~~--fYG~LA--a~~Lg~~~~-~---~---~~~ 397 (644)
T PRK11619 333 TWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQ---RG--FYPMVA--AQRLGEEYP-L---K---IDK 397 (644)
T ss_pred HHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcC---CC--cHHHHH--HHHcCCCCC-C---C---CCC
Confidence 6666664432 223344445566656677777777777776431 11 222211 112221100 0 0 000
Q ss_pred CCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 047932 422 YELDI-----ISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLD 486 (598)
Q Consensus 422 ~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 486 (598)
.++.. ..-..-+..+...|+...|...+..+.+. .+......+.....+.|.++.++.....
T Consensus 398 ~~~~~~~~~~~~~~~ra~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~A~~~g~~~~ai~~~~~ 464 (644)
T PRK11619 398 APKPDSALTQGPEMARVRELMYWNMDNTARSEWANLVAS---RSKTEQAQLARYAFNQQWWDLSVQATIA 464 (644)
T ss_pred CCchhhhhccChHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCHHHHHHHHhh
Confidence 00000 01122345566778888888888887764 2444445555555577777777665543
No 398
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=54.84 E-value=1.8e+02 Score=26.94 Aligned_cols=116 Identities=9% Similarity=0.073 Sum_probs=62.1
Q ss_pred CCHHHHHHHHHHHhh-CCCCCCHHHHHHHHHHHHh-cC-CHHHHHHHHHHHHH-CCCCCCHhhHHHHHHHHHhCCCHHHH
Q 047932 195 GFVDKAMELFLQMKD-ENINPNVVTYNSLIHCFSH-AD-DWNEAKRLFIKMMD-QGVHPNVVTFSVIVDELCKNGKMEEA 270 (598)
Q Consensus 195 g~~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~~-~~-~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a 270 (598)
....+|+.+|+.... ..+--|..+...+++.... .+ ....-.++.+-+.. .+-.++..+...++..++..+++.+-
T Consensus 142 ~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl 221 (292)
T PF13929_consen 142 KIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKL 221 (292)
T ss_pred HHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHH
Confidence 335566666663221 1233356666666655544 11 12222222222221 22345556666677777777777777
Q ss_pred HHHHHHHHhc-CCCcCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 047932 271 SRLLDLMIQI-GVHPNTFVYNTLMDGFCLTGRVNHAKELFV 310 (598)
Q Consensus 271 ~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 310 (598)
.+.++..... +...|...|..+++.....|+..-...+.+
T Consensus 222 ~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 222 FQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred HHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 7777666554 445566677777777777777555444443
No 399
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=54.84 E-value=36 Score=22.84 Aligned_cols=30 Identities=20% Similarity=0.270 Sum_probs=18.1
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 047932 180 DTVTYNTIIDGVCKEGFVDKAMELFLQMKD 209 (598)
Q Consensus 180 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 209 (598)
|-.-.-.+|.+|...|++++|.+.++.+..
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344445566677777777777776666654
No 400
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=54.57 E-value=43 Score=26.70 Aligned_cols=56 Identities=21% Similarity=0.240 Sum_probs=43.2
Q ss_pred CCChHHHHHHHHHHHH-cCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH
Q 047932 52 LITPNEALCIFDYMLR-MHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDL 110 (598)
Q Consensus 52 ~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 110 (598)
..+..+-+.+|+...+ .+|. ........+.-++.+.++|+.++.+.+.+++. .||.
T Consensus 48 ~~dv~~GI~iLe~l~~~~~~~-~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~--e~~n 104 (149)
T KOG3364|consen 48 TEDVQEGIVILEDLLKSAHPE-RRRECLYYLAVGHYRLKEYSKSLRYVDALLET--EPNN 104 (149)
T ss_pred hHHHHHhHHHHHHHhhhcCcc-cchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh--CCCc
Confidence 4456778889999986 5555 45556666777888999999999999999976 5554
No 401
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=53.25 E-value=79 Score=30.94 Aligned_cols=57 Identities=14% Similarity=-0.007 Sum_probs=40.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhCCCCCCHH--HHHHHHHHHH--HcCCHHHHHHHHHHHHhC
Q 047932 398 IDGLCKNGFVLEALELFCAIGNSKYELDII--SYSCLIDGLC--KIGKLETAWELFQSLSRV 455 (598)
Q Consensus 398 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~--~~g~~~~A~~~~~~~~~~ 455 (598)
+..+...+++..|.++|+.+... ++++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 138 a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 138 AKELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34455889999999999998875 444443 4555555555 466788999999887764
No 402
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=52.25 E-value=42 Score=22.54 Aligned_cols=24 Identities=21% Similarity=0.368 Sum_probs=13.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q 047932 465 NIMIHGLCNDGQMDKAHDLFLDME 488 (598)
Q Consensus 465 ~~l~~~~~~~g~~~~A~~~~~~~~ 488 (598)
..++.++...|++++|.++++++.
T Consensus 27 LqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 27 LQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344555666666666666665554
No 403
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=52.12 E-value=1.2e+02 Score=25.90 Aligned_cols=22 Identities=18% Similarity=0.220 Sum_probs=12.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHh
Q 047932 433 IDGLCKIGKLETAWELFQSLSR 454 (598)
Q Consensus 433 ~~~~~~~g~~~~A~~~~~~~~~ 454 (598)
+..|.+.|.+++|.+++++...
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhc
Confidence 3445556666666666665554
No 404
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=51.79 E-value=1.8e+02 Score=26.00 Aligned_cols=85 Identities=16% Similarity=0.064 Sum_probs=36.5
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 047932 144 NTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTYNSLI 223 (598)
Q Consensus 144 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 223 (598)
...+..|...-++..|....+++.+- ..+...+ --|.+..+.+--.++.+-....+++-+..-...++
T Consensus 134 RRtMEiyS~ttRFalaCN~s~KIiEP-----------IQSRCAi-LRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii 201 (333)
T KOG0991|consen 134 RRTMEIYSNTTRFALACNQSEKIIEP-----------IQSRCAI-LRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII 201 (333)
T ss_pred HHHHHHHcccchhhhhhcchhhhhhh-----------HHhhhHh-hhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh
Confidence 33455555555555555555554331 1111222 22333333333333333333344444444443333
Q ss_pred HHHHhcCCHHHHHHHHHHH
Q 047932 224 HCFSHADDWNEAKRLFIKM 242 (598)
Q Consensus 224 ~~~~~~~~~~~a~~~~~~~ 242 (598)
+...||..+|+..++.-
T Consensus 202 --fta~GDMRQalNnLQst 218 (333)
T KOG0991|consen 202 --FTAQGDMRQALNNLQST 218 (333)
T ss_pred --hhccchHHHHHHHHHHH
Confidence 34556666665555443
No 405
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=51.20 E-value=1.2e+02 Score=25.71 Aligned_cols=67 Identities=19% Similarity=0.318 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHhCCCCCC--HHHH-----HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 047932 442 LETAWELFQSLSRVGLLPN--VVTY-----NIMIHGLCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFIRNNE 511 (598)
Q Consensus 442 ~~~A~~~~~~~~~~~~~p~--~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 511 (598)
.+.|+.+|+.+.+.-..|+ .... ...+..|.+.|.+++|.+++++..+. |+.......+....+..+
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~d---~~~~~~r~kL~~II~~Kd 158 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFSD---PESQKLRMKLLMIIREKD 158 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---CCchhHHHHHHHHHHccc
Confidence 5667777777766422221 1111 23345689999999999999999873 454444544444444443
No 406
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=51.19 E-value=14 Score=33.80 Aligned_cols=63 Identities=5% Similarity=0.037 Sum_probs=28.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHhcCCccccchhHHHHHHH
Q 047932 460 NVVTYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPDCVIFNT-IMLGFIRNNETSKSSRGKLMSQMS 525 (598)
Q Consensus 460 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~ 525 (598)
|...|...+.-..+.|.+.+...+|.++.... |.|...|.. ...-|...++++.+.. ++...+
T Consensus 106 D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~kh-P~nvdlWI~~c~~e~~~~ani~s~Ra--~f~~gl 169 (435)
T COG5191 106 DPKIWSQYAAYVIKKKMYGEMKNIFAECLTKH-PLNVDLWIYCCAFELFEIANIESSRA--MFLKGL 169 (435)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCceeeeeeccchhhhhccHHHHHH--HHHhhh
Confidence 34444444433334455555555555555443 334444432 2222344455555555 555554
No 407
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=50.88 E-value=35 Score=33.57 Aligned_cols=102 Identities=14% Similarity=0.078 Sum_probs=64.6
Q ss_pred cccCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhccHHHHHHHH
Q 047932 49 DINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCRIMEAAALF 128 (598)
Q Consensus 49 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~a~~~~ 128 (598)
.++.++++.|...+.++++.+|+ .+..|..-..++.+.+++..|+.=+.++++.. |.
T Consensus 14 ~l~~~~fd~avdlysKaI~ldpn--ca~~~anRa~a~lK~e~~~~Al~Da~kaie~d--P~------------------- 70 (476)
T KOG0376|consen 14 ALKDKVFDVAVDLYSKAIELDPN--CAIYFANRALAHLKVESFGGALHDALKAIELD--PT------------------- 70 (476)
T ss_pred hcccchHHHHHHHHHHHHhcCCc--ceeeechhhhhheeechhhhHHHHHHhhhhcC--ch-------------------
Confidence 34677888888888888888876 55566655677778888888777777776542 21
Q ss_pred HHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHH
Q 047932 129 TKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGV 191 (598)
Q Consensus 129 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~ 191 (598)
-...|..-..++.+.+.+.+|...|+.... +.|+..-....+.-|
T Consensus 71 ----------~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~--------l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 71 ----------YIKAYVRRGTAVMALGEFKKALLDLEKVKK--------LAPNDPDATRKIDEC 115 (476)
T ss_pred ----------hhheeeeccHHHHhHHHHHHHHHHHHHhhh--------cCcCcHHHHHHHHHH
Confidence 112233334445556666777777777665 345555555555443
No 408
>PRK12798 chemotaxis protein; Reviewed
Probab=50.37 E-value=2.6e+02 Score=27.49 Aligned_cols=84 Identities=14% Similarity=0.160 Sum_probs=40.4
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH-hcCCHHHHHHHHHHHccC--CCCCCHHHHHHHHHHHHhcCCHHHH
Q 047932 299 TGRVNHAKELFVSMESNGCMHDVVSYTTLINGYC-KTKNVEEALNLYRKMLPK--GIRPTVVTYSTLFLGLFEVHQVEHA 375 (598)
Q Consensus 299 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a 375 (598)
.|+..++.+.+..+.....++....+-.|+.+-. ...++.+|+++|+...-. |.-........-+......|+.+++
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLlaPGTLvEEAALRRsi~la~~~g~~~rf 204 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLLAPGTLVEEAALRRSLFIAAQLGDADKF 204 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHhCCchHHHHHHHHHhhHHHHhcCcHHHH
Confidence 4666666666666555544555555555554433 234566666666654432 1111122223333334455665555
Q ss_pred HHHHHHH
Q 047932 376 LKLFDEM 382 (598)
Q Consensus 376 ~~~~~~~ 382 (598)
..+-.+.
T Consensus 205 ~~la~~Y 211 (421)
T PRK12798 205 EALARNY 211 (421)
T ss_pred HHHHHHH
Confidence 5544433
No 409
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=49.47 E-value=1.9e+02 Score=25.77 Aligned_cols=128 Identities=14% Similarity=0.151 Sum_probs=69.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHc
Q 047932 325 TTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKN 404 (598)
Q Consensus 325 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 404 (598)
...+..|.+.-++.-|.....++.+- ..+-.+ +--|.+..+..-..++.+-....+++.+.....+++ +...
T Consensus 134 RRtMEiyS~ttRFalaCN~s~KIiEP-----IQSRCA-iLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~ 205 (333)
T KOG0991|consen 134 RRTMEIYSNTTRFALACNQSEKIIEP-----IQSRCA-ILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQ 205 (333)
T ss_pred HHHHHHHcccchhhhhhcchhhhhhh-----HHhhhH-hhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhcc
Confidence 33455666666666666555555431 111222 223445555444444554444445555544444443 4567
Q ss_pred CCHHHHHHHHHHHhh------------CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH
Q 047932 405 GFVLEALELFCAIGN------------SKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNV 461 (598)
Q Consensus 405 g~~~~A~~~~~~~~~------------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 461 (598)
|+..+|+..++.-.. ..-.|.+.....++..|. .+++++|.+++.++-+.|+.|..
T Consensus 206 GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~D 273 (333)
T KOG0991|consen 206 GDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPED 273 (333)
T ss_pred chHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHHH
Confidence 777777776654331 111455555566665543 35778888888888777777643
No 410
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=48.99 E-value=3.8e+02 Score=28.98 Aligned_cols=107 Identities=13% Similarity=0.047 Sum_probs=65.2
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhc--------cHHHHHHHHH
Q 047932 58 ALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINC--------RIMEAAALFT 129 (598)
Q Consensus 58 A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~--------~~~~a~~~~~ 129 (598)
=+.-++.-+..++. +...+..|+..+.+.|++++....-..|...- ..++..|...+.. ...++..+|+
T Consensus 98 ei~t~~ee~ai~~y--~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~-pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~e 174 (881)
T KOG0128|consen 98 EIRTLEEELAINSY--KYAQMVQLIGLLRKLGDLEKLRQARLEMSEIA-PLPPHLWLEWLKDELSMTQSEERKEVEELFE 174 (881)
T ss_pred HHHHHHHHhccccc--chHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CCChHHHHHHHHHHHhhccCcchhHHHHHHH
Confidence 33344444444443 77788899999999999988777666666542 2334455444433 5667777777
Q ss_pred HHHHcCCCCCHhhHHHHHHHH-------HhcCChhHHHHHHHHHHhc
Q 047932 130 KLRVFGCEPDVFTYNTLINGL-------CRTGHTIVALNLFEEMANG 169 (598)
Q Consensus 130 ~~~~~~~~~~~~~~~~l~~~~-------~~~g~~~~A~~~~~~~~~~ 169 (598)
+.+... .++..|.-.+..+ .+.++++....+|+++.+.
T Consensus 175 kal~dy--~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s 219 (881)
T KOG0128|consen 175 KALGDY--NSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRS 219 (881)
T ss_pred HHhccc--ccchHHHHHHHHHHhccccccccccchhhhHHHHHHHhh
Confidence 776532 2334444433333 3346777888888887764
No 411
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=48.61 E-value=72 Score=20.60 Aligned_cols=20 Identities=20% Similarity=0.212 Sum_probs=9.1
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 047932 470 GLCNDGQMDKAHDLFLDMEA 489 (598)
Q Consensus 470 ~~~~~g~~~~A~~~~~~~~~ 489 (598)
++.+.|++++|.+..+.+++
T Consensus 10 g~ykl~~Y~~A~~~~~~lL~ 29 (53)
T PF14853_consen 10 GHYKLGEYEKARRYCDALLE 29 (53)
T ss_dssp HHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHh
Confidence 34444555555555444444
No 412
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=48.58 E-value=2.8e+02 Score=29.54 Aligned_cols=231 Identities=13% Similarity=0.096 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHH
Q 047932 303 NHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTV---VTYSTLFLGLFEVHQVEHALKLF 379 (598)
Q Consensus 303 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~ 379 (598)
....++++......-......+..=++.....-+-++-...+.+|...--.|++ .+...++-.|....+++...++.
T Consensus 145 ~R~kq~Lk~vq~~ssah~REkflsD~RkAR~~y~G~~l~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLV 224 (1226)
T KOG4279|consen 145 HRMKQVLKSVQVESSAHSREKFLSDLRKAREIYDGDQLNDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLV 224 (1226)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHH
Q ss_pred HHHhhCCCCcCHH----------HHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHc---------C
Q 047932 380 DEMQHNDVAADTY----------IYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKI---------G 440 (598)
Q Consensus 380 ~~~~~~~~~~~~~----------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------g 440 (598)
+.+.+ -||.. .|...++---+-|+-++|+...-.+.+..-+..+..|....+.|-.. +
T Consensus 225 e~Lk~---iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~ 301 (1226)
T KOG4279|consen 225 EDLKR---IPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAE 301 (1226)
T ss_pred HHHHh---CcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchh
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccccchhHH
Q 047932 441 KLETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFIRNNETSKSSRGKL 520 (598)
Q Consensus 441 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 520 (598)
..+.|++.|++..+ +.|+..+=-.+...+...|..=+--.-++..-- .|-..+.+.|..++-.+ +
T Consensus 302 s~~~a~~WyrkaFe--veP~~~sGIN~atLL~aaG~~Fens~Elq~Igm-----------kLn~LlgrKG~leklq~--Y 366 (1226)
T KOG4279|consen 302 SLNHAIEWYRKAFE--VEPLEYSGINLATLLRAAGEHFENSLELQQIGM-----------KLNSLLGRKGALEKLQE--Y 366 (1226)
T ss_pred hHHHHHHHHHHHhc--cCchhhccccHHHHHHHhhhhccchHHHHHHHH-----------HHHHHhhccchHHHHHH--H
Q ss_pred HHHHHhcccCCCCCChHHHHHHHHHhCCCCCChhhHHHhhhcCc
Q 047932 521 MSQMSSCWSMCFQPKTLICSISIMLQKDMSPGDTMFSTALLMDP 564 (598)
Q Consensus 521 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~l~~~P 564 (598)
++.. +|...-....|..+|.++.++.+++.|
T Consensus 367 WdV~-------------~y~~asVLAnd~~kaiqAae~mfKLk~ 397 (1226)
T KOG4279|consen 367 WDVA-------------TYFEASVLANDYQKAIQAAEMMFKLKP 397 (1226)
T ss_pred HhHH-------------HhhhhhhhccCHHHHHHHHHHHhccCC
No 413
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=48.11 E-value=98 Score=26.72 Aligned_cols=32 Identities=16% Similarity=0.175 Sum_probs=20.9
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047932 458 LPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEA 489 (598)
Q Consensus 458 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 489 (598)
.|+..+|..++..+...|+.++|.+...++..
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 56666666666666666666666666666655
No 414
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=47.99 E-value=1.2e+02 Score=23.33 Aligned_cols=27 Identities=26% Similarity=0.380 Sum_probs=21.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHcc
Q 047932 323 SYTTLINGYCKTKNVEEALNLYRKMLP 349 (598)
Q Consensus 323 ~~~~l~~~~~~~~~~~~A~~~~~~~~~ 349 (598)
-|..|+..|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 477788888888888888888887766
No 415
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=47.97 E-value=3e+02 Score=27.50 Aligned_cols=117 Identities=9% Similarity=-0.107 Sum_probs=74.0
Q ss_pred ccCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhc-----cHHHH
Q 047932 50 INLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINC-----RIMEA 124 (598)
Q Consensus 50 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~-----~~~~a 124 (598)
...||...|-+....+++..|. ++.........+...|.++.+...+....+. +.....+...+++. +.++|
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~--~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQ--DPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCC--CchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHH
Confidence 3578888888888888888877 4444444555566789999999888665432 12233444444443 77788
Q ss_pred HHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 047932 125 AALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGN 170 (598)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 170 (598)
...-+-|....++ +..+........-..|-++++.-.+++....+
T Consensus 377 ~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 377 LSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 8777777765443 33333333333345567778887777777655
No 416
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=47.57 E-value=1.8e+02 Score=30.46 Aligned_cols=21 Identities=29% Similarity=0.431 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHhCCCCCC
Q 047932 440 GKLETAWELFQSLSRVGLLPN 460 (598)
Q Consensus 440 g~~~~A~~~~~~~~~~~~~p~ 460 (598)
|++.+|.+.+-.+...+..|.
T Consensus 509 ~~~~~Aa~~Lv~Ll~~~~~Pk 529 (566)
T PF07575_consen 509 GDFREAASLLVSLLKSPIAPK 529 (566)
T ss_dssp ---------------------
T ss_pred hhHHHHHHHHHHHHCCCCCcH
Confidence 455555555555544444443
No 417
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.52 E-value=1.3e+02 Score=32.41 Aligned_cols=112 Identities=13% Similarity=0.153 Sum_probs=55.2
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 047932 180 DTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVD 259 (598)
Q Consensus 180 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 259 (598)
|..+|..|+....++|+.+-|+-.|++.+. |+.|--.|.-.|+.++-.++.+....++ |..+ ...
T Consensus 671 d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~Km~~iae~r~---D~~~---~~q 735 (1202)
T KOG0292|consen 671 DKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLSKMMKIAEIRN---DATG---QFQ 735 (1202)
T ss_pred cHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHHHHHHHHHhhh---hhHH---HHH
Confidence 355666666666666666666666655443 2333334555566665555554443221 2211 111
Q ss_pred HHHhCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047932 260 ELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTLMDGFCLTGRVNHAKELFVSMESN 315 (598)
Q Consensus 260 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 315 (598)
...-.|+.++-.++++..-. . +..|. .....|.-++|.++.++....
T Consensus 736 nalYl~dv~ervkIl~n~g~---~--~layl----ta~~~G~~~~ae~l~ee~~~~ 782 (1202)
T KOG0292|consen 736 NALYLGDVKERVKILENGGQ---L--PLAYL----TAAAHGLEDQAEKLGEELEKQ 782 (1202)
T ss_pred HHHHhccHHHHHHHHHhcCc---c--cHHHH----HHhhcCcHHHHHHHHHhhccc
Confidence 11224556655555544321 1 11121 123457778888888887663
No 418
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=47.26 E-value=45 Score=32.86 Aligned_cols=89 Identities=19% Similarity=0.117 Sum_probs=47.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHccCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCC
Q 047932 328 INGYCKTKNVEEALNLYRKMLPKGIRPTVV-TYSTLFLGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGF 406 (598)
Q Consensus 328 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 406 (598)
+..+...+.++.|..++.++++. .|+-. -|..=..++.+.+++..|+.=+..+++.. +.....|..-..++.+.+.
T Consensus 11 an~~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d-P~~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIELD-PTYIKAYVRRGTAVMALGE 87 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhcC-chhhheeeeccHHHHhHHH
Confidence 33445556677777777776665 33322 22222355666666666666666665543 2223333334445555566
Q ss_pred HHHHHHHHHHHhh
Q 047932 407 VLEALELFCAIGN 419 (598)
Q Consensus 407 ~~~A~~~~~~~~~ 419 (598)
+.+|+..|+....
T Consensus 88 ~~~A~~~l~~~~~ 100 (476)
T KOG0376|consen 88 FKKALLDLEKVKK 100 (476)
T ss_pred HHHHHHHHHHhhh
Confidence 6666666665554
No 419
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=47.22 E-value=1.1e+02 Score=22.41 Aligned_cols=46 Identities=15% Similarity=0.235 Sum_probs=36.2
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 047932 58 ALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTG 105 (598)
Q Consensus 58 A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 105 (598)
....++..+..+|. +..+-..+...+...|++++|++.+-.+++..
T Consensus 7 ~~~al~~~~a~~P~--D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~d 52 (90)
T PF14561_consen 7 DIAALEAALAANPD--DLDARYALADALLAAGDYEEALDQLLELVRRD 52 (90)
T ss_dssp HHHHHHHHHHHSTT---HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-
T ss_pred cHHHHHHHHHcCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 34556667777886 88999999999999999999999999988763
No 420
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=45.94 E-value=1.7e+02 Score=33.15 Aligned_cols=143 Identities=10% Similarity=0.036 Sum_probs=82.4
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhccHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhc
Q 047932 74 PVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRT 153 (598)
Q Consensus 74 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 153 (598)
....|..+...+-+.|+.++|+..-.+..- +.+++...+...+...|..+.......
T Consensus 972 ~~~~~~~La~l~~~~~d~~~Ai~~~~ka~i-----------------------i~eR~~g~ds~~t~~~y~nlal~~f~~ 1028 (1236)
T KOG1839|consen 972 VASKYRSLAKLSNRLGDNQEAIAQQRKACI-----------------------ISERVLGKDSPNTKLAYGNLALYEFAV 1028 (1236)
T ss_pred HHHHHHHHHHHHhhhcchHHHHHhccccee-----------------------eechhccCCCHHHHHHhhHHHHHHHhc
Confidence 556677777777777777777666554321 112222222233444566666666666
Q ss_pred CChhHHHHHHHHHHhcC-CCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhC-----CC--CCCHHHHHHHHHH
Q 047932 154 GHTIVALNLFEEMANGN-GEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDE-----NI--NPNVVTYNSLIHC 225 (598)
Q Consensus 154 g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~--~~~~~~~~~l~~~ 225 (598)
++...|...+.+..... -.+|...||...+++.+-..+...++++.|.+..+.+... |. -....++..+.+.
T Consensus 1029 ~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l 1108 (1236)
T KOG1839|consen 1029 KNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARL 1108 (1236)
T ss_pred cCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHH
Confidence 77777777776665432 2233334555566666666666668888888888877653 11 1134456666666
Q ss_pred HHhcCCHHHHHHHH
Q 047932 226 FSHADDWNEAKRLF 239 (598)
Q Consensus 226 ~~~~~~~~~a~~~~ 239 (598)
+...+++..|....
T Consensus 1109 ~~s~~dfr~al~~e 1122 (1236)
T KOG1839|consen 1109 FESMKDFRNALEHE 1122 (1236)
T ss_pred HhhhHHHHHHHHHH
Confidence 66666665555443
No 421
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=45.92 E-value=70 Score=27.65 Aligned_cols=45 Identities=13% Similarity=0.064 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 047932 57 EALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNST 104 (598)
Q Consensus 57 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 104 (598)
...+..++.++.. |++..+..++.++..+|+.++|.++.+++...
T Consensus 129 ~~~~~a~~~l~~~---P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 129 AYIEWAERLLRRR---PDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred HHHHHHHHHHHhC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3344444444444 57788888888888999999998888888764
No 422
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=45.89 E-value=45 Score=30.82 Aligned_cols=38 Identities=26% Similarity=0.326 Sum_probs=22.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 047932 463 TYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPDCVIFN 500 (598)
Q Consensus 463 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 500 (598)
.|+.-|....+.||+++|+.+++++.+.|+.--..+|.
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFi 296 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFI 296 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHH
Confidence 34566666666666666666666666666544444443
No 423
>PRK13342 recombination factor protein RarA; Reviewed
Probab=45.83 E-value=3.2e+02 Score=27.22 Aligned_cols=32 Identities=19% Similarity=0.346 Sum_probs=20.0
Q ss_pred cCCHHHHHHHHHHHccCCCCCCHHHHHHHHHH
Q 047932 334 TKNVEEALNLYRKMLPKGIRPTVVTYSTLFLG 365 (598)
Q Consensus 334 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 365 (598)
.++.+.|+.++..|.+.|..|....-..++.+
T Consensus 243 gsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a 274 (413)
T PRK13342 243 GSDPDAALYYLARMLEAGEDPLFIARRLVIIA 274 (413)
T ss_pred cCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 46777788888888777766554443333333
No 424
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=45.74 E-value=5e+02 Score=29.47 Aligned_cols=55 Identities=16% Similarity=0.169 Sum_probs=27.3
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcC----HHHHHHHHHHHHhcCCHHHHHHHH
Q 047932 254 FSVIVDELCKNGKMEEASRLLDLMIQIGVHPN----TFVYNTLMDGFCLTGRVNHAKELF 309 (598)
Q Consensus 254 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~g~~~~a~~~~ 309 (598)
|..+++.+-..+-.+.+.++-..+++. ++++ ..+++.+.+.....|.+-+|...+
T Consensus 986 Ylkv~rlle~hn~~E~vcQlA~~AIe~-l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai 1044 (1480)
T KOG4521|consen 986 YLKVVRLLEEHNHAEEVCQLAVKAIEN-LPDDNPSVALISTTVFNHHLDLGHWFQAYKAI 1044 (1480)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHh-CCCcchhHHHHHHHHHHhhhchhhHHHHHHHH
Confidence 444555555566666655555555443 1111 223445555555556555554433
No 425
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=45.52 E-value=75 Score=19.93 Aligned_cols=32 Identities=13% Similarity=0.248 Sum_probs=17.9
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 047932 472 CNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIM 503 (598)
Q Consensus 472 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 503 (598)
.+.|-.+++..++++|.+.|+.-+...+..++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 34555556666666666556555555555443
No 426
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=45.02 E-value=1.2e+02 Score=22.22 Aligned_cols=54 Identities=13% Similarity=0.198 Sum_probs=29.1
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCC
Q 047932 178 KPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINP-NVVTYNSLIHCFSHADD 231 (598)
Q Consensus 178 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~ 231 (598)
|.|......+...+...|++++|++.+-.+.+..... +...-..|+..+...|.
T Consensus 19 P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 19 PDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 4556666667777777777777777777666553221 33344444544444443
No 427
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=44.69 E-value=1.7e+02 Score=28.51 Aligned_cols=135 Identities=16% Similarity=0.163 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC--------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C
Q 047932 425 DIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPN--------VVTYNIMIHGLCNDGQMDKAHDLFLDMEAK-----G 491 (598)
Q Consensus 425 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~ 491 (598)
+...+-.++-.+..++++.+|..+-+.....-..-| ..+|.-+-..+-..|+...-...+...+.. +
T Consensus 125 ~aY~~lLv~Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd 204 (493)
T KOG2581|consen 125 EAYLYLLVLLFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHD 204 (493)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCc
Q ss_pred CCCCHHHHHHHHHHHHhcCCccccchhHHHHHHHhcccCCCCCChHHHHHHHHH----------hCCCCCChhhHHHhhh
Q 047932 492 VEPDCVIFNTIMLGFIRNNETSKSSRGKLMSQMSSCWSMCFQPKTLICSISIML----------QKDMSPGDTMFSTALL 561 (598)
Q Consensus 492 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~----------~~~~~~a~~~~~~~l~ 561 (598)
-.-.....+.+++.|...+.++.|.. +..+.. .|+...-+-.++. ++++..|.+.+-.++.
T Consensus 205 ~e~qavLiN~LLr~yL~n~lydqa~~--lvsK~~-------~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~r 275 (493)
T KOG2581|consen 205 EEGQAVLINLLLRNYLHNKLYDQADK--LVSKSV-------YPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALR 275 (493)
T ss_pred chhHHHHHHHHHHHHhhhHHHHHHHH--Hhhccc-------CccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHH
Q ss_pred cCccccc
Q 047932 562 MDPDCSC 568 (598)
Q Consensus 562 ~~P~~~~ 568 (598)
..|++.+
T Consensus 276 kapq~~a 282 (493)
T KOG2581|consen 276 KAPQHAA 282 (493)
T ss_pred hCcchhh
No 428
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=44.57 E-value=4.7e+02 Score=28.87 Aligned_cols=122 Identities=14% Similarity=0.146 Sum_probs=64.8
Q ss_pred hcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC
Q 047932 152 RTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTYNSLIHCFSHADD 231 (598)
Q Consensus 152 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 231 (598)
+...-..|..+-.+|..+. .++|.++++.|.. ..-++.+... ..-|.. -....
T Consensus 1159 k~D~r~da~klk~~me~qk--------------~tli~AL~kKg~a---~ak~e~l~g~-~e~dae---------ee~s~ 1211 (1304)
T KOG1114|consen 1159 KEDTRPDAVKLKKKMEKQK--------------DTLIDALVKKGEA---FAKYEALKGH-KEQDAE---------EELSK 1211 (1304)
T ss_pred ccCCcchHHHHHHHHHHHH--------------HHHHHHHHHhhhH---Hhhhhhhccc-ccccch---------hhhhh
Confidence 4444455777777775543 6677888777642 2222222221 111221 11123
Q ss_pred HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhc-CCCcCHHHHHHHHHHHHhcC
Q 047932 232 WNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQI-GVHPNTFVYNTLMDGFCLTG 300 (598)
Q Consensus 232 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~g 300 (598)
.+.-.+.|.++.+.--.-|..++..-...+...|++..+.+++.++.+. |-.++...+..++..+...|
T Consensus 1212 ld~~~e~y~el~kw~d~~dsK~~~~a~~ha~~~~~yGr~lK~l~kliee~~es~t~~~~~~~~el~~~Lg 1281 (1304)
T KOG1114|consen 1212 LDSYNENYQELLKWLDASDSKVWQIAKKHAKALGQYGRALKALLKLIEENGESATKDVAVLLAELLENLG 1281 (1304)
T ss_pred hhhHHHHHHHHHHHhhcCCchheehhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhC
Confidence 3444555555554422335555665666667778888888888777663 34455555555555554444
No 429
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=44.40 E-value=1.5e+02 Score=26.96 Aligned_cols=59 Identities=10% Similarity=0.120 Sum_probs=32.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh----CCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047932 429 YSCLIDGLCKIGKLETAWELFQSLSR----VGL-LPNVVTYNIMIHGLCNDGQMDKAHDLFLDM 487 (598)
Q Consensus 429 ~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 487 (598)
...+..-|...|++++|.++|+.+.. .|. .+...+...+..++.+.|+.+..+.+.-++
T Consensus 181 ~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 181 SLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 34556666667777777777766632 111 112233444555566666666666555444
No 430
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=43.84 E-value=1.4e+02 Score=24.36 Aligned_cols=25 Identities=16% Similarity=0.153 Sum_probs=10.9
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhcCC
Q 047932 258 VDELCKNGKMEEASRLLDLMIQIGV 282 (598)
Q Consensus 258 ~~~~~~~g~~~~a~~~~~~~~~~~~ 282 (598)
+..+...++.-.|..+++.+.+.+.
T Consensus 27 l~~L~~~~~~~sAeei~~~l~~~~p 51 (145)
T COG0735 27 LELLLEADGHLSAEELYEELREEGP 51 (145)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHhCC
Confidence 3334444333444444444444433
No 431
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=43.78 E-value=7.3e+02 Score=30.85 Aligned_cols=363 Identities=8% Similarity=0.020 Sum_probs=189.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh
Q 047932 186 TIIDGVCKEGFVDKAMELFLQMKDENI--NPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCK 263 (598)
Q Consensus 186 ~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 263 (598)
.+..+-.+.+.+.+|.-.++.-..... .-....|..+...|...+++|....+...... .|+ ....+.....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---~~s---l~~qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA---DPS---LYQQILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---Ccc---HHHHHHHHHh
Confidence 455566778889999999988311100 11233444555699999999998888764211 222 2334556778
Q ss_pred CCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHH-HHHHHhcCCHHHHHH
Q 047932 264 NGKMEEASRLLDLMIQIGVHPNTFVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTL-INGYCKTKNVEEALN 342 (598)
Q Consensus 264 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~A~~ 342 (598)
.|++..|...|+.+.+.+ ++...+++-++......|.++.+....+-..... .+....++.+ +.+--+.++++...+
T Consensus 1462 ~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~ 1539 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLES 1539 (2382)
T ss_pred hccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhh
Confidence 899999999999999875 3346678888877778888888877666555432 2233333332 333346677777666
Q ss_pred HHHHHccCCCCCCHHHHHH--HHHHHHhc--CCHHHHHHHHHHHhhC--------CCC-cCHHHHHHHHHHHHHcCCHHH
Q 047932 343 LYRKMLPKGIRPTVVTYST--LFLGLFEV--HQVEHALKLFDEMQHN--------DVA-ADTYIYNTFIDGLCKNGFVLE 409 (598)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~--l~~~~~~~--~~~~~a~~~~~~~~~~--------~~~-~~~~~~~~l~~~~~~~g~~~~ 409 (598)
.+. .. +..+|.. ++....+. .+.-.-.+..+.+.+. +.. .-...|..++..+.-..-...
T Consensus 1540 ~l~---~~----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~ 1612 (2382)
T KOG0890|consen 1540 YLS---DR----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLELENS 1612 (2382)
T ss_pred hhh---cc----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHHHHH
Confidence 655 11 1122222 22222221 1111111222222211 111 011234444433322211111
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH-HHhCCCCC-----CHHHHHHHHHHHHhcCCHHHHHHH
Q 047932 410 ALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQS-LSRVGLLP-----NVVTYNIMIHGLCNDGQMDKAHDL 483 (598)
Q Consensus 410 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~p-----~~~~~~~l~~~~~~~g~~~~A~~~ 483 (598)
...+...-......-+...|..-+..-....+..+-+--+++ +......| -..+|....+....+|.++.|...
T Consensus 1613 ~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~na 1692 (2382)
T KOG0890|consen 1613 IEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNA 1692 (2382)
T ss_pred HHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHH
Confidence 111111000000011111222222211111112222212222 12211122 256788888888889999999998
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCccccchhHHHHHHHhcccCC----CCCChHHHHH------------HHHHhC
Q 047932 484 FLDMEAKGVEPDCVIFNTIMLGFIRNNETSKSSRGKLMSQMSSCWSMC----FQPKTLICSI------------SIMLQK 547 (598)
Q Consensus 484 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~p~~~~~~~------------~~~~~~ 547 (598)
+-.+.+.+ . +..+.-.+..+...|+...|+. ++++....+..+ ..|.+..-+. .....+
T Consensus 1693 ll~A~e~r-~--~~i~~E~AK~lW~~gd~~~Al~--~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~ 1767 (2382)
T KOG0890|consen 1693 LLNAKESR-L--PEIVLERAKLLWQTGDELNALS--VLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESG 1767 (2382)
T ss_pred HHhhhhcc-c--chHHHHHHHHHHhhccHHHHHH--HHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhc
Confidence 88877765 3 3456667778999999999999 999998662111 0111121111 112223
Q ss_pred CC--CCChhhHHHhhhcCccccc
Q 047932 548 DM--SPGDTMFSTALLMDPDCSC 568 (598)
Q Consensus 548 ~~--~~a~~~~~~~l~~~P~~~~ 568 (598)
+. +.-...|..+.++.|+...
T Consensus 1768 n~~s~~ilk~Y~~~~ail~ewe~ 1790 (2382)
T KOG0890|consen 1768 NFESKDILKYYHDAKAILPEWED 1790 (2382)
T ss_pred chhHHHHHHHHHHHHHHcccccC
Confidence 43 3446889999999995544
No 432
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=43.46 E-value=1.5e+02 Score=24.14 Aligned_cols=65 Identities=11% Similarity=0.058 Sum_probs=43.4
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcc
Q 047932 448 LFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFIRNNETS 513 (598)
Q Consensus 448 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 513 (598)
+.+.+.+.|++++.. =..++..+...++.-.|.++++.+.+.+...+..|....+..+...|-..
T Consensus 8 ~~~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Glv~ 72 (145)
T COG0735 8 AIERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGLVH 72 (145)
T ss_pred HHHHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCCEE
Confidence 344555666665543 23456666777777888888888888765666777777777777777543
No 433
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=42.89 E-value=1.3e+02 Score=21.92 Aligned_cols=66 Identities=11% Similarity=0.039 Sum_probs=38.9
Q ss_pred HHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHH
Q 047932 124 AAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAM 201 (598)
Q Consensus 124 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 201 (598)
+.+++....+.|+- +......+-.+-...|+.+.|.+++..+. ++ +..|..++.++...|.-+-|.
T Consensus 21 ~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg----------~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 21 TRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QK----------EGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cC----------CcHHHHHHHHHHHcCchhhhh
Confidence 34455555555422 22222222222235688888888888887 55 456777788887777655544
No 434
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=41.53 E-value=19 Score=33.60 Aligned_cols=88 Identities=17% Similarity=0.098 Sum_probs=41.3
Q ss_pred hcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH-HHHHHHHHHHHhcC
Q 047932 152 RTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNV-VTYNSLIHCFSHAD 230 (598)
Q Consensus 152 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~ 230 (598)
..|.++.|++.|...+..+ ++....|..-.+++.+.+++..|++=+....+. .||. .-|-.--.+....|
T Consensus 126 n~G~~~~ai~~~t~ai~ln-------p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--n~Dsa~~ykfrg~A~rllg 196 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELN-------PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI--NPDSAKGYKFRGYAERLLG 196 (377)
T ss_pred cCcchhhhhcccccccccC-------CchhhhcccccceeeeccCCchhhhhhhhhhcc--CcccccccchhhHHHHHhh
Confidence 3455555555555555544 344444444455555555555555555444443 1221 12222223333345
Q ss_pred CHHHHHHHHHHHHHCCCC
Q 047932 231 DWNEAKRLFIKMMDQGVH 248 (598)
Q Consensus 231 ~~~~a~~~~~~~~~~~~~ 248 (598)
+|++|.+.+....+.+..
T Consensus 197 ~~e~aa~dl~~a~kld~d 214 (377)
T KOG1308|consen 197 NWEEAAHDLALACKLDYD 214 (377)
T ss_pred chHHHHHHHHHHHhcccc
Confidence 555555555555554433
No 435
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=41.49 E-value=2.9e+02 Score=25.51 Aligned_cols=199 Identities=13% Similarity=0.175 Sum_probs=108.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHh-------HHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCC
Q 047932 145 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTV-------TYNTIIDGVCKEGFVDKAMELFLQMKDE----NIN 213 (598)
Q Consensus 145 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~-------~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~ 213 (598)
-+.+-..+.+++++|+..+.++...| +..|.. +...+...|...|+...--+......+. .-+
T Consensus 8 e~a~~~v~~~~~~~ai~~yk~iL~kg------~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~ 81 (421)
T COG5159 8 ELANNAVKSNDIEKAIGEYKRILGKG------VSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKP 81 (421)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHhcCC------CChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcch
Confidence 35566778899999999999999876 444433 4456778888888877655554433221 111
Q ss_pred CCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHCCCCCCHh-----hHHHHHHHHHhCCCHHHHHHHHHHH----HhcCCC
Q 047932 214 PNVVTYNSLIHCFS-HADDWNEAKRLFIKMMDQGVHPNVV-----TFSVIVDELCKNGKMEEASRLLDLM----IQIGVH 283 (598)
Q Consensus 214 ~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~g~~~~a~~~~~~~----~~~~~~ 283 (598)
.......+|+.-+- ....++.-+.+....++....-... .=..++..+.+.|.+.+|+.+...+ .+.+-+
T Consensus 82 k~~KiirtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK 161 (421)
T COG5159 82 KITKIIRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDK 161 (421)
T ss_pred hHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCc
Confidence 12233444444442 2345666666666555432221111 1234677788999999988766544 333334
Q ss_pred cCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHH----CCCCCChhhHHHHHHH--HHhcCCHHHHHHHHHHHcc
Q 047932 284 PNTFVYNTL-MDGFCLTGRVNHAKELFVSMES----NGCMHDVVSYTTLING--YCKTKNVEEALNLYRKMLP 349 (598)
Q Consensus 284 ~~~~~~~~l-l~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~~~l~~~--~~~~~~~~~A~~~~~~~~~ 349 (598)
++..+...+ -..|....+..++..-+..... .-+||....---++.+ .|...++..|..+|-+..+
T Consensus 162 ~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~E 234 (421)
T COG5159 162 INLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALE 234 (421)
T ss_pred cceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHh
Confidence 443332222 2345555555555444443322 1234443333334433 3445567777777776655
No 436
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=40.59 E-value=65 Score=21.92 Aligned_cols=46 Identities=11% Similarity=0.028 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 047932 461 VVTYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFI 507 (598)
Q Consensus 461 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 507 (598)
...++.++..+++..-.+.++.++.++...| ..+..+|..-++.+.
T Consensus 8 ~~l~~Ql~el~Aed~AieDtiy~L~~al~~g-~I~~d~~lK~vR~La 53 (65)
T PF09454_consen 8 DPLSNQLYELVAEDHAIEDTIYYLDRALQRG-SIDLDTFLKQVRSLA 53 (65)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SS-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 3345555555555555555555555555555 334444444444443
No 437
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=40.36 E-value=70 Score=18.10 Aligned_cols=26 Identities=19% Similarity=0.331 Sum_probs=16.2
Q ss_pred ChHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 047932 54 TPNEALCIFDYMLRMHPSPPPVSSFNILF 82 (598)
Q Consensus 54 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 82 (598)
.++.|..+|++.+..+| ++..|...+
T Consensus 2 E~dRAR~IyeR~v~~hp---~~k~WikyA 27 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHP---EVKNWIKYA 27 (32)
T ss_pred hHHHHHHHHHHHHHhCC---CchHHHHHH
Confidence 35777777777777654 455555433
No 438
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=40.23 E-value=76 Score=18.46 Aligned_cols=24 Identities=17% Similarity=0.245 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHH
Q 047932 76 SSFNILFGCLAKNKHYDTVLSLFK 99 (598)
Q Consensus 76 ~~~~~l~~~~~~~g~~~~A~~~~~ 99 (598)
..+..++..+-..|++++|+++|+
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~ 25 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQ 25 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHH
Confidence 356677778888999999999944
No 439
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=40.20 E-value=66 Score=29.69 Aligned_cols=53 Identities=8% Similarity=-0.002 Sum_probs=38.2
Q ss_pred ccCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 047932 50 INLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNST 104 (598)
Q Consensus 50 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 104 (598)
-+.|+.++|..+|+.++...|. ++.+...+....-..++.-+|-.+|-+++..
T Consensus 127 ~~~Gk~ekA~~lfeHAlalaP~--~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALti 179 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALALAPT--NPQILIEMGQFREMHNEIVEADQCYVKALTI 179 (472)
T ss_pred HhccchHHHHHHHHHHHhcCCC--CHHHHHHHhHHHHhhhhhHhhhhhhheeeee
Confidence 3678888888888888888776 6777777766666666677777777766643
No 440
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=40.19 E-value=6.1e+02 Score=28.87 Aligned_cols=124 Identities=19% Similarity=0.113 Sum_probs=68.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 047932 358 TYSTLFLGLFEVHQVEHALKLFDEMQHNDVAAD----TYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLI 433 (598)
Q Consensus 358 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 433 (598)
-|..+++.+-+.+..+.+.++-..+++.- +++ ..+++.+.+.....|.+.+|...+-.-... .--......++
T Consensus 985 YYlkv~rlle~hn~~E~vcQlA~~AIe~l-~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npds--errrdcLRqlv 1061 (1480)
T KOG4521|consen 985 YYLKVVRLLEEHNHAEEVCQLAVKAIENL-PDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPDS--ERRRDCLRQLV 1061 (1480)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCcH--HHHHHHHHHHH
Confidence 35667777777888888888777666541 222 445666666677777777766544322110 11123456666
Q ss_pred HHHHHcCCHHH------------HHH-HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 047932 434 DGLCKIGKLET------------AWE-LFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLF 484 (598)
Q Consensus 434 ~~~~~~g~~~~------------A~~-~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 484 (598)
..++.+|.++. ... +++...+.........|+.|-..+...+++.+|-.++
T Consensus 1062 ivLfecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvM 1125 (1480)
T KOG4521|consen 1062 IVLFECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVM 1125 (1480)
T ss_pred HHHHhccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHH
Confidence 66677666443 333 2222222211112334565666667788887766553
No 441
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=40.14 E-value=3.7e+02 Score=26.37 Aligned_cols=55 Identities=13% Similarity=0.197 Sum_probs=30.7
Q ss_pred HHHhcCCHHHHHHHHHHHccCCCCCCHH--HHHHHHHHHHh--cCCHHHHHHHHHHHhhC
Q 047932 330 GYCKTKNVEEALNLYRKMLPKGIRPTVV--TYSTLFLGLFE--VHQVEHALKLFDEMQHN 385 (598)
Q Consensus 330 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~~--~~~~~~a~~~~~~~~~~ 385 (598)
...+.+++..|.++++.+... ++++.. .+..+..+|.. .-++.+|.+.++.....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 344667777777777777665 333333 33334444442 44566666666665543
No 442
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=39.84 E-value=71 Score=29.59 Aligned_cols=36 Identities=31% Similarity=0.371 Sum_probs=25.2
Q ss_pred CCCHhH-HHHHHHHHHhcCCHHHHHHHHHHHhhCCCC
Q 047932 178 KPDTVT-YNTIIDGVCKEGFVDKAMELFLQMKDENIN 213 (598)
Q Consensus 178 ~~~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 213 (598)
.+|..+ |+.-|....+.|++++|+.++++..+.|+.
T Consensus 253 ~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 253 LNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred CchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 344444 457777777778888888888877777765
No 443
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=39.78 E-value=1.7e+02 Score=26.63 Aligned_cols=54 Identities=20% Similarity=0.145 Sum_probs=27.4
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHhc----C-CCcCHHHHHHHHHHHHhcCCHHHHHHHH
Q 047932 256 VIVDELCKNGKMEEASRLLDLMIQI----G-VHPNTFVYNTLMDGFCLTGRVNHAKELF 309 (598)
Q Consensus 256 ~l~~~~~~~g~~~~a~~~~~~~~~~----~-~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 309 (598)
.+...|.+.|++++|.++|+.+... | ..+...+...+..++...|+.+....+.
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~ 241 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTS 241 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 3555666666666666666665321 1 1222334444455555555555544443
No 444
>PHA02875 ankyrin repeat protein; Provisional
Probab=38.96 E-value=4e+02 Score=26.40 Aligned_cols=209 Identities=14% Similarity=0.104 Sum_probs=94.2
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHhh--HHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcCHH--HHHHHHHHHHhcCC
Q 047932 226 FSHADDWNEAKRLFIKMMDQGVHPNVVT--FSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTF--VYNTLMDGFCLTGR 301 (598)
Q Consensus 226 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~ll~~~~~~g~ 301 (598)
.+..|+.+-+.. +.+.|..++... ....+...+..|+.+ +.+.+.+.|..|+.. .....+...+..|+
T Consensus 9 A~~~g~~~iv~~----Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~ 80 (413)
T PHA02875 9 AILFGELDIARR----LLDIGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGD 80 (413)
T ss_pred HHHhCCHHHHHH----HHHCCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCC
Confidence 455677655444 445676665432 223445556677765 445555666544432 12234455667788
Q ss_pred HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCH---HHHHHHHHHHHhcCCHHHHHHH
Q 047932 302 VNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTV---VTYSTLFLGLFEVHQVEHALKL 378 (598)
Q Consensus 302 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~ 378 (598)
.+.+..+++.-.......+.... ..+...+..|+.+-+..+ .+.|..|+. ...+. +...+..|+.+-+..+
T Consensus 81 ~~~v~~Ll~~~~~~~~~~~~~g~-tpL~~A~~~~~~~iv~~L----l~~gad~~~~~~~g~tp-Lh~A~~~~~~~~v~~L 154 (413)
T PHA02875 81 VKAVEELLDLGKFADDVFYKDGM-TPLHLATILKKLDIMKLL----IARGADPDIPNTDKFSP-LHLAVMMGDIKGIELL 154 (413)
T ss_pred HHHHHHHHHcCCcccccccCCCC-CHHHHHHHhCCHHHHHHH----HhCCCCCCCCCCCCCCH-HHHHHHcCCHHHHHHH
Confidence 77765555432111001111112 223334456665444433 334444332 11222 3333456666554444
Q ss_pred HHHHhhCCCCcC---HHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHH
Q 047932 379 FDEMQHNDVAAD---TYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIIS---YSCLIDGLCKIGKLETAWELFQSL 452 (598)
Q Consensus 379 ~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~ 452 (598)
+ +.|..++ ..-. ..+...+..|+.+-+.. +.+.|..++... ...++...+..|+.+ +.+.+
T Consensus 155 l----~~g~~~~~~d~~g~-TpL~~A~~~g~~eiv~~----Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~----iv~~L 221 (413)
T PHA02875 155 I----DHKACLDIEDCCGC-TPLIIAMAKGDIAICKM----LLDSGANIDYFGKNGCVAALCYAIENNKID----IVRLF 221 (413)
T ss_pred H----hcCCCCCCCCCCCC-CHHHHHHHcCCHHHHHH----HHhCCCCCCcCCCCCCchHHHHHHHcCCHH----HHHHH
Confidence 4 3333222 1111 22333455666554433 334444443221 123344344556554 44445
Q ss_pred HhCCCCCCH
Q 047932 453 SRVGLLPNV 461 (598)
Q Consensus 453 ~~~~~~p~~ 461 (598)
.+.|..++.
T Consensus 222 l~~gad~n~ 230 (413)
T PHA02875 222 IKRGADCNI 230 (413)
T ss_pred HHCCcCcch
Confidence 566666664
No 445
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=38.79 E-value=34 Score=27.17 Aligned_cols=21 Identities=33% Similarity=0.529 Sum_probs=11.1
Q ss_pred CCHHHHHHHHHHHHHCCCCCC
Q 047932 475 GQMDKAHDLFLDMEAKGVEPD 495 (598)
Q Consensus 475 g~~~~A~~~~~~~~~~~~~p~ 495 (598)
|.-..|-.+|++|++.|-+||
T Consensus 109 gsk~DaY~VF~kML~~G~pPd 129 (140)
T PF11663_consen 109 GSKTDAYAVFRKMLERGNPPD 129 (140)
T ss_pred ccCCcHHHHHHHHHhCCCCCc
Confidence 444455555555555555554
No 446
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=38.35 E-value=3.2e+02 Score=25.08 Aligned_cols=26 Identities=15% Similarity=0.223 Sum_probs=16.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 047932 285 NTFVYNTLMDGFCLTGRVNHAKELFV 310 (598)
Q Consensus 285 ~~~~~~~ll~~~~~~g~~~~a~~~~~ 310 (598)
|+.....+...|.+.|++.+|+..|-
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hfl 114 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHFL 114 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 56667777777777777777766553
No 447
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=37.27 E-value=5.7e+02 Score=27.73 Aligned_cols=199 Identities=11% Similarity=0.061 Sum_probs=103.4
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHH---hcCCHHHHHHHHHHHhhCCCCCC
Q 047932 139 DVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVC---KEGFVDKAMELFLQMKDENINPN 215 (598)
Q Consensus 139 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~---~~g~~~~A~~~~~~~~~~~~~~~ 215 (598)
+...+..||..+.+.|++++....-..|...- +..+..|...+.... ..+....+..+|++....-. +
T Consensus 112 ~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~-------pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~dy~--~ 182 (881)
T KOG0128|consen 112 KYAQMVQLIGLLRKLGDLEKLRQARLEMSEIA-------PLPPHLWLEWLKDELSMTQSEERKEVEELFEKALGDYN--S 182 (881)
T ss_pred chHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-------CCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhcccc--c
Confidence 45567778888899999888777777777653 556777766664433 34667777888887765422 3
Q ss_pred HHHHHHHHHHH-------HhcCCHHHHHHHHHHHHHC-CCCCC--HhhHHHH---HHHHHhCCCHHHHHHHHHHHHhcCC
Q 047932 216 VVTYNSLIHCF-------SHADDWNEAKRLFIKMMDQ-GVHPN--VVTFSVI---VDELCKNGKMEEASRLLDLMIQIGV 282 (598)
Q Consensus 216 ~~~~~~l~~~~-------~~~~~~~~a~~~~~~~~~~-~~~~~--~~~~~~l---~~~~~~~g~~~~a~~~~~~~~~~~~ 282 (598)
+..|.-.+... ...++++....+|.+.+.. |...+ ...|..+ -..|...-..++...++..-+..++
T Consensus 183 v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~~~~ 262 (881)
T KOG0128|consen 183 VPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIALFVRELKQPL 262 (881)
T ss_pred chHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhccc
Confidence 33333333322 3346777788888877653 21111 1122222 2233333334555556555554432
Q ss_pred CcCHHHHHHHHHHHH-------hcCCHHHHHHH-------HHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHc
Q 047932 283 HPNTFVYNTLMDGFC-------LTGRVNHAKEL-------FVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKML 348 (598)
Q Consensus 283 ~~~~~~~~~ll~~~~-------~~g~~~~a~~~-------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 348 (598)
|..+-+.-+.-.. ...+++.+.+- +.+.... .++--..|..++..+.+.|++-.-...++++.
T Consensus 263 --D~~~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~-~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~ 339 (881)
T KOG0128|consen 263 --DEDTRGWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQK-EPIKDQEWMSYIDFEKKSGDPVRIQLIEERAV 339 (881)
T ss_pred --hhhhhHHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence 2221111111111 11222333222 2222222 12334456777777778887766666666554
Q ss_pred c
Q 047932 349 P 349 (598)
Q Consensus 349 ~ 349 (598)
.
T Consensus 340 ~ 340 (881)
T KOG0128|consen 340 A 340 (881)
T ss_pred H
Confidence 4
No 448
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=36.63 E-value=2.1e+02 Score=22.60 Aligned_cols=43 Identities=16% Similarity=0.250 Sum_probs=24.3
Q ss_pred HHHHHHHHHhhCCCCc-CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 047932 374 HALKLFDEMQHNDVAA-DTYIYNTFIDGLCKNGFVLEALELFCA 416 (598)
Q Consensus 374 ~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 416 (598)
.+.++|..|...++-. ....|......+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 5666666666554333 244555556666666666666666654
No 449
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=36.04 E-value=3.8e+02 Score=25.29 Aligned_cols=59 Identities=8% Similarity=0.091 Sum_probs=31.2
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHhcCC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047932 257 IVDELCKNGKMEEASRLLDLMIQIGV-HPNTFVYNTLMDGFCLTGRVNHAKELFVSMESN 315 (598)
Q Consensus 257 l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 315 (598)
+..+..+.|+..+|.+.++++.+.-. ..-......++.++....-+..+..++.+..+.
T Consensus 281 LAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYDdi 340 (556)
T KOG3807|consen 281 LAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDI 340 (556)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 44445567777777777777655311 101123344566666555555555555544443
No 450
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=35.95 E-value=2.2e+02 Score=22.55 Aligned_cols=59 Identities=19% Similarity=0.103 Sum_probs=41.4
Q ss_pred CCCHHhHHHHHhc--cHHHHHHHHHHHHHcCCCCCHh-hHHHHHHHHHhcCChhHHHHHHHH
Q 047932 107 FPDLYTHSILINC--RIMEAAALFTKLRVFGCEPDVF-TYNTLINGLCRTGHTIVALNLFEE 165 (598)
Q Consensus 107 ~p~~~~~~~ll~~--~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~ 165 (598)
.-|+.....-|.- ..++..++|..|...++..... .|......+...|++.+|.++|+.
T Consensus 63 knD~RyLkiWi~ya~~~~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~~ 124 (125)
T smart00777 63 KNDPRYLKIWLKYADNCDEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQL 124 (125)
T ss_pred cCCHHHHHHHHHHHHhcCCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 3444443333332 4456888999999887655443 477888889999999999999863
No 451
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=35.92 E-value=2.7e+02 Score=29.14 Aligned_cols=90 Identities=17% Similarity=0.215 Sum_probs=58.1
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcC--CCcCHHHHHHHHHHHHhcCCHH------HHHHHHHHHHHCCCCCChhhHHHH
Q 047932 256 VIVDELCKNGKMEEASRLLDLMIQIG--VHPNTFVYNTLMDGFCLTGRVN------HAKELFVSMESNGCMHDVVSYTTL 327 (598)
Q Consensus 256 ~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~g~~~------~a~~~~~~~~~~~~~~~~~~~~~l 327 (598)
.++.+|...|++..+.++++.....+ -+.-...+|..++.+.+.|.++ .|.+.++...- .-|..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~l---n~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARL---NGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhc---CCcchHHHHH
Confidence 68899999999999999999887653 2223456777888888888754 44455555443 3477788777
Q ss_pred HHHHHhcCCHHHHHHHHHHHc
Q 047932 328 INGYCKTKNVEEALNLYRKML 348 (598)
Q Consensus 328 ~~~~~~~~~~~~A~~~~~~~~ 348 (598)
+.+-...-+-.-..-++.+.+
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i 130 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELI 130 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHH
Confidence 766554333333333444433
No 452
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=35.55 E-value=3.9e+02 Score=25.22 Aligned_cols=65 Identities=8% Similarity=-0.106 Sum_probs=47.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047932 143 YNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQM 207 (598)
Q Consensus 143 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 207 (598)
...|...|-+.+++..|.+.+.-+...++.+.....-...++-.+.+.|.+.++..+|..+..+.
T Consensus 106 rl~LAsiYE~Eq~~~~aaq~L~~I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRa 170 (399)
T KOG1497|consen 106 RLHLASIYEKEQNWRDAAQVLVGIPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRA 170 (399)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhccCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 34578889999999999999888766553332222233456677788888888888888877664
No 453
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=35.44 E-value=3.3e+02 Score=24.49 Aligned_cols=40 Identities=13% Similarity=-0.052 Sum_probs=20.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 047932 292 LMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGY 331 (598)
Q Consensus 292 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 331 (598)
++..+...|+++++...++.+...+...+..-.+.+..+|
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvay 46 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAY 46 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHH
Confidence 4455555666666666666666554444444445444444
No 454
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=35.36 E-value=2.3e+02 Score=26.87 Aligned_cols=94 Identities=14% Similarity=0.088 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhCCC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-HHHHHHH
Q 047932 392 YIYNTFIDGLCKNGFVLEALELFCAIGNSKY---ELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPN-VVTYNIM 467 (598)
Q Consensus 392 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l 467 (598)
..|.-=.+-|.+..++..|...|.+-++..+ ..+...|+.-..+-...|++..|+.-....+.. .|+ ...|..-
T Consensus 82 en~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~--~P~h~Ka~~R~ 159 (390)
T KOG0551|consen 82 ENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKL--KPTHLKAYIRG 159 (390)
T ss_pred HHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc--Ccchhhhhhhh
Confidence 3444445555666666666666665554321 122344555555555556666666655555552 333 3334444
Q ss_pred HHHHHhcCCHHHHHHHHHHH
Q 047932 468 IHGLCNDGQMDKAHDLFLDM 487 (598)
Q Consensus 468 ~~~~~~~g~~~~A~~~~~~~ 487 (598)
..++....++.+|....++.
T Consensus 160 Akc~~eLe~~~~a~nw~ee~ 179 (390)
T KOG0551|consen 160 AKCLLELERFAEAVNWCEEG 179 (390)
T ss_pred hHHHHHHHHHHHHHHHHhhh
Confidence 44455555555555555544
No 455
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=35.28 E-value=3.9e+02 Score=25.22 Aligned_cols=58 Identities=14% Similarity=0.233 Sum_probs=34.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047932 185 NTIIDGVCKEGFVDKAMELFLQMKDENINPNVV---TYNSLIHCFSHADDWNEAKRLFIKMMD 244 (598)
Q Consensus 185 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~ 244 (598)
..|..+..+.|+..+|.+.|+++.+. .|-.. ....|+.++....-+..+..++.+.-+
T Consensus 279 RRLAMCARklGrlrEA~K~~RDL~ke--~pl~t~lniheNLiEalLE~QAYADvqavLakYDd 339 (556)
T KOG3807|consen 279 RRLAMCARKLGRLREAVKIMRDLMKE--FPLLTMLNIHENLLEALLELQAYADVQAVLAKYDD 339 (556)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 44555556778888888888877654 12111 234566666666555555555555443
No 456
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=34.57 E-value=3.1e+02 Score=27.02 Aligned_cols=59 Identities=17% Similarity=0.072 Sum_probs=32.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhC------CCC-cCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 047932 360 STLFLGLFEVHQVEHALKLFDEMQHN------DVA-ADTYIYNTFIDGLCKNGFVLEALELFCAIG 418 (598)
Q Consensus 360 ~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 418 (598)
..+++.++-.|++..|+++++.+.-. .++ -...++-.+.-+|.-.+++.+|.+.|..++
T Consensus 126 igLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 126 IGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566667777777766554321 111 123344455556666666666666666554
No 457
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=34.44 E-value=3.3e+02 Score=24.09 Aligned_cols=26 Identities=23% Similarity=0.244 Sum_probs=16.2
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcC
Q 047932 256 VIVDELCKNGKMEEASRLLDLMIQIG 281 (598)
Q Consensus 256 ~l~~~~~~~g~~~~a~~~~~~~~~~~ 281 (598)
.+.....+.|+.++|.+.|..++..+
T Consensus 170 LigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 170 LIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 34445566677777777777666653
No 458
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=34.29 E-value=1.9e+02 Score=21.17 Aligned_cols=14 Identities=29% Similarity=0.427 Sum_probs=6.2
Q ss_pred CCHHHHHHHHHHHH
Q 047932 300 GRVNHAKELFVSME 313 (598)
Q Consensus 300 g~~~~a~~~~~~~~ 313 (598)
|+.+.|.+++..+.
T Consensus 50 g~~~~ar~LL~~L~ 63 (88)
T cd08819 50 GNESGARELLKRIV 63 (88)
T ss_pred CcHHHHHHHHHHhc
Confidence 44444444444444
No 459
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=34.24 E-value=4.6e+02 Score=25.73 Aligned_cols=64 Identities=14% Similarity=0.154 Sum_probs=43.9
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHhhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047932 182 VTYNTIIDGVCKEGFVDKAMELFLQMKDE--NINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQ 245 (598)
Q Consensus 182 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 245 (598)
..+.-+.+.|...|+++.|++.|-+...- ..+..+..|-.+|..-...|+|........+....
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st 216 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAEST 216 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhC
Confidence 34566778888899999999998885542 11223445666777777788887777777666543
No 460
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=34.01 E-value=3.9e+02 Score=24.79 Aligned_cols=173 Identities=10% Similarity=0.038 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHhCC--------CCCCHHhHHHHHhc---cHHHHHHHHHHHHHcC-CCCCHhhHHHHHHHHHhcCChhHH
Q 047932 92 DTVLSLFKRLNSTG--------LFPDLYTHSILINC---RIMEAAALFTKLRVFG-CEPDVFTYNTLINGLCRTGHTIVA 159 (598)
Q Consensus 92 ~~A~~~~~~~~~~~--------~~p~~~~~~~ll~~---~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A 159 (598)
+....+|..+.+.| +.-|.-.++.++.. ++++--+-+++..+.+ -.-...++..+..-|++.++.+.+
T Consensus 55 ~~maplYkyL~E~~n~kt~a~~ikfD~~~~n~l~kkneeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng 134 (412)
T COG5187 55 KCMAPLYKYLAEKGNPKTSASVIKFDRGRMNTLLKKNEEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNG 134 (412)
T ss_pred hhhhHHHHHHHhccCCcccchheehhhHHHHHHHHhhHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhH
Q ss_pred HHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH--HHhcCCHHHHHH
Q 047932 160 LNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTYNSLIHC--FSHADDWNEAKR 237 (598)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~ 237 (598)
.+...+..+..-..|..+.. ..+-..|.-.|....-.++-++..+.|.+.|-.-+..--...-.+ +....++.+|-.
T Consensus 135 ~~~~~~~~~~a~stg~KiDv-~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~ 213 (412)
T COG5187 135 FEWMRRLMRDAMSTGLKIDV-FLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRYKVYKGIFKMMRRNFKEAAI 213 (412)
T ss_pred HHHHHHHHHHHHhcccchhh-HHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhHHHHHHHHHHHHHhhHHHHH
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHHHHhCC
Q 047932 238 LFIKMMDQGVHPNVVTFSVIVDELCKNG 265 (598)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g 265 (598)
++...+..--......|...++...-.|
T Consensus 214 Ll~d~l~tF~S~El~sY~~~vrYa~~~G 241 (412)
T COG5187 214 LLSDILPTFESSELISYSRAVRYAIFCG 241 (412)
T ss_pred HHHHHhccccccccccHHHHHHHHHHhh
No 461
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=33.84 E-value=1.5e+02 Score=19.94 Aligned_cols=16 Identities=25% Similarity=0.349 Sum_probs=7.5
Q ss_pred HcCCHHHHHHHHHHHH
Q 047932 438 KIGKLETAWELFQSLS 453 (598)
Q Consensus 438 ~~g~~~~A~~~~~~~~ 453 (598)
..|++=+|-++++.+-
T Consensus 11 n~g~f~EaHEvlE~~W 26 (62)
T PF03745_consen 11 NAGDFFEAHEVLEELW 26 (62)
T ss_dssp HTT-HHHHHHHHHHHC
T ss_pred cCCCHHHhHHHHHHHH
Confidence 3455555555555543
No 462
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=33.84 E-value=3.9e+02 Score=24.74 Aligned_cols=210 Identities=13% Similarity=0.114 Sum_probs=109.8
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhccHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHH
Q 047932 80 ILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVA 159 (598)
Q Consensus 80 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 159 (598)
.+++-..+.+++++|+..|.+++..|++.+..+.+- ...+...+...|.+.|++..-
T Consensus 8 e~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nE-----------------------qE~tvlel~~lyv~~g~~~~l 64 (421)
T COG5159 8 ELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNE-----------------------QEATVLELFKLYVSKGDYCSL 64 (421)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhH-----------------------HHHHHHHHHHHHHhcCCcchH
Confidence 345556677889999999999998888776555421 123344556666666665544
Q ss_pred HHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhc-CCHHHHHHHHHHHhhCCCCCC-----HHHHHHHHHHHHhcCCHH
Q 047932 160 LNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKE-GFVDKAMELFLQMKDENINPN-----VVTYNSLIHCFSHADDWN 233 (598)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~ 233 (598)
.+...........|. -+.......+|+..+-.. ..++..+.+.....+....-. ...-..++..+.+.|.+.
T Consensus 65 ~~~i~~sre~m~~ft--k~k~~KiirtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~Ys 142 (421)
T COG5159 65 GDTITSSREAMEDFT--KPKITKIIRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYS 142 (421)
T ss_pred HHHHHhhHHHHHHhc--chhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHH
Confidence 333322111000000 112233444455444332 234544444444433211101 122245788899999999
Q ss_pred HHHHHHHHHH----HCCCCCCHhhHHHH-HHHHHhCCCHHHHHHHHHHHHhc----CCCcCHHHHHHHHHH--HHhcCCH
Q 047932 234 EAKRLFIKMM----DQGVHPNVVTFSVI-VDELCKNGKMEEASRLLDLMIQI----GVHPNTFVYNTLMDG--FCLTGRV 302 (598)
Q Consensus 234 ~a~~~~~~~~----~~~~~~~~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~ll~~--~~~~g~~ 302 (598)
.|+.+...+. +..-+++..+...+ -..|....++.++...+...... -.+|....-.-++.+ .+...++
T Consensus 143 dalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dy 222 (421)
T COG5159 143 DALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDY 222 (421)
T ss_pred HHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccc
Confidence 9988766543 44445554443322 23566666666666555544332 134443333334433 3445567
Q ss_pred HHHHHHHHHHHH
Q 047932 303 NHAKELFVSMES 314 (598)
Q Consensus 303 ~~a~~~~~~~~~ 314 (598)
..|...|-+..+
T Consensus 223 ktA~SYF~Ea~E 234 (421)
T COG5159 223 KTASSYFIEALE 234 (421)
T ss_pred hhHHHHHHHHHh
Confidence 777777766654
No 463
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=33.80 E-value=2.9e+02 Score=25.84 Aligned_cols=70 Identities=13% Similarity=0.201 Sum_probs=36.2
Q ss_pred HHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh----------cCCHHHHH
Q 047932 272 RLLDLMIQIGVHPNTFVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCK----------TKNVEEAL 341 (598)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------~~~~~~A~ 341 (598)
++++.+...++.|.-.++.=+.-.+.+.=.+..++.+++.+... ..-|..|+..||. .|++....
T Consensus 264 EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD-----~~rfd~Ll~iCcsmlil~Re~il~~DF~~nm 338 (370)
T KOG4567|consen 264 ELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD-----PQRFDFLLYICCSMLILVRERILEGDFTVNM 338 (370)
T ss_pred HHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC-----hhhhHHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 34555555555555555544444455555555666666655542 2224444444332 46666666
Q ss_pred HHHHH
Q 047932 342 NLYRK 346 (598)
Q Consensus 342 ~~~~~ 346 (598)
++++.
T Consensus 339 kLLQ~ 343 (370)
T KOG4567|consen 339 KLLQN 343 (370)
T ss_pred HHHhc
Confidence 66654
No 464
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=33.74 E-value=2.6e+02 Score=26.11 Aligned_cols=43 Identities=9% Similarity=0.213 Sum_probs=26.7
Q ss_pred HHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 047932 377 KLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGN 419 (598)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 419 (598)
++++.+...++.|.-..+.-+.-.+.+.-.+.+.+.+|+.+..
T Consensus 264 EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s 306 (370)
T KOG4567|consen 264 ELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS 306 (370)
T ss_pred HHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc
Confidence 4555566666666666666555556666666666666666653
No 465
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.65 E-value=7e+02 Score=27.67 Aligned_cols=118 Identities=14% Similarity=0.147 Sum_probs=64.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCH--HHHHHHHHHHhhCCCCCCHHHH
Q 047932 142 TYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFV--DKAMELFLQMKDENINPNVVTY 219 (598)
Q Consensus 142 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~--~~A~~~~~~~~~~~~~~~~~~~ 219 (598)
-|..|+..|...|+.++|++++.......... ..--...+..++..+-+.+.. +-.++.-+........-....+
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~---d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~If 582 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDT---DSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIF 582 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhcccccc---ccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeee
Confidence 47889999999999999999999998743100 001112233345554444443 4444444444433111111111
Q ss_pred HH------------HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH
Q 047932 220 NS------------LIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELC 262 (598)
Q Consensus 220 ~~------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 262 (598)
.. -+-.|......+-+...++.+....-.++....+.++..|.
T Consensus 583 t~~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~ 637 (877)
T KOG2063|consen 583 TSEDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYL 637 (877)
T ss_pred eccChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHH
Confidence 11 12235556666667777777766544455555666665554
No 466
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=33.65 E-value=37 Score=26.97 Aligned_cols=31 Identities=16% Similarity=0.415 Sum_probs=21.2
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 047932 438 KIGKLETAWELFQSLSRVGLLPNVVTYNIMIHG 470 (598)
Q Consensus 438 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 470 (598)
..|.-..|..+|++|++.|-+||. |+.|+..
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 345566678888888888877763 6666654
No 467
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=32.52 E-value=2.2e+02 Score=21.50 Aligned_cols=58 Identities=19% Similarity=0.279 Sum_probs=30.9
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 047932 435 GLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPDCVIF 499 (598)
Q Consensus 435 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 499 (598)
.+...|++++|..+.+.+ ..||...|..|.. .+.|..+++..-+-+|...| .|....|
T Consensus 48 SLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg-~p~lq~F 105 (115)
T TIGR02508 48 SLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNRLAASG-DPRLQTF 105 (115)
T ss_pred HHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 345566666666665554 2456665554432 35555555555555555555 3443333
No 468
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=32.48 E-value=3.6e+02 Score=23.98 Aligned_cols=17 Identities=24% Similarity=0.413 Sum_probs=7.2
Q ss_pred HHhcCCHHHHHHHHHHH
Q 047932 366 LFEVHQVEHALKLFDEM 382 (598)
Q Consensus 366 ~~~~~~~~~a~~~~~~~ 382 (598)
....|+.+.|++....+
T Consensus 74 ~I~~G~Ie~Aie~in~l 90 (228)
T KOG2659|consen 74 AIEEGQIEEAIEKVNQL 90 (228)
T ss_pred HHHhccHHHHHHHHHHh
Confidence 33444444444444333
No 469
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.46 E-value=2e+02 Score=21.60 Aligned_cols=22 Identities=9% Similarity=0.132 Sum_probs=12.0
Q ss_pred HHHHHHhcCCccccchhHHHHHHH
Q 047932 502 IMLGFIRNNETSKSSRGKLMSQMS 525 (598)
Q Consensus 502 l~~~~~~~g~~~~A~~~~~~~~~~ 525 (598)
|.-.|.+.|+.+.|.+ -|+.-.
T Consensus 78 LGlLys~~G~~e~a~~--eFetEK 99 (121)
T COG4259 78 LGLLYSNSGKDEQAVR--EFETEK 99 (121)
T ss_pred HHHHHhhcCChHHHHH--HHHHhh
Confidence 3334666666666666 555443
No 470
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=32.45 E-value=79 Score=22.27 Aligned_cols=32 Identities=6% Similarity=0.120 Sum_probs=20.4
Q ss_pred hHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047932 55 PNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNS 103 (598)
Q Consensus 55 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 103 (598)
+++|+.++.++...+ ..|++++|+++|...++
T Consensus 3 l~kai~Lv~~A~~eD-----------------~~gny~eA~~lY~~ale 34 (75)
T cd02680 3 LERAHFLVTQAFDED-----------------EKGNAEEAIELYTEAVE 34 (75)
T ss_pred HHHHHHHHHHHHHhh-----------------HhhhHHHHHHHHHHHHH
Confidence 456666666665443 34777788877776653
No 471
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=32.15 E-value=3.6e+02 Score=28.29 Aligned_cols=75 Identities=12% Similarity=0.193 Sum_probs=51.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhC--CCCCCHHHHHHHHHHHHhcCCHH------HHHHHHHHHHHCCCCCCHhhHHHH
Q 047932 186 TIIDGVCKEGFVDKAMELFLQMKDE--NINPNVVTYNSLIHCFSHADDWN------EAKRLFIKMMDQGVHPNVVTFSVI 257 (598)
Q Consensus 186 ~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~------~a~~~~~~~~~~~~~~~~~~~~~l 257 (598)
+|+.+|..+|++.++.++++..... |-+.-...||..++...+.|.++ .+.+.++... +.-|..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 7889999999999999999988765 33334567888888888888764 3344444333 34466777766
Q ss_pred HHHHHh
Q 047932 258 VDELCK 263 (598)
Q Consensus 258 ~~~~~~ 263 (598)
+.+-..
T Consensus 110 ~~~sln 115 (1117)
T COG5108 110 CQASLN 115 (1117)
T ss_pred HHhhcC
Confidence 654433
No 472
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=31.97 E-value=4.3e+02 Score=24.72 Aligned_cols=24 Identities=17% Similarity=0.335 Sum_probs=16.1
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHH
Q 047932 284 PNTFVYNTLMDGFCLTGRVNHAKE 307 (598)
Q Consensus 284 ~~~~~~~~ll~~~~~~g~~~~a~~ 307 (598)
.|+..|..+..+|.-.|+...+.+
T Consensus 195 Fd~~~Y~~v~~AY~lLgk~~~~~d 218 (291)
T PF10475_consen 195 FDPDKYSKVQEAYQLLGKTQSAMD 218 (291)
T ss_pred CCHHHHHHHHHHHHHHhhhHHHHH
Confidence 466777777777777776555443
No 473
>PF15469 Sec5: Exocyst complex component Sec5
Probab=31.81 E-value=2e+02 Score=24.54 Aligned_cols=23 Identities=13% Similarity=0.235 Sum_probs=15.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 047932 467 MIHGLCNDGQMDKAHDLFLDMEA 489 (598)
Q Consensus 467 l~~~~~~~g~~~~A~~~~~~~~~ 489 (598)
-+.-|.+.|+++.++..|.++..
T Consensus 92 ~L~~~i~~~dy~~~i~dY~kak~ 114 (182)
T PF15469_consen 92 NLRECIKKGDYDQAINDYKKAKS 114 (182)
T ss_pred HHHHHHHcCcHHHHHHHHHHHHH
Confidence 34556667777777777766654
No 474
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=31.71 E-value=5.1e+02 Score=25.45 Aligned_cols=64 Identities=16% Similarity=0.077 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccC
Q 047932 287 FVYNTLMDGFCLTGRVNHAKELFVSMESNG--CMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPK 350 (598)
Q Consensus 287 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 350 (598)
..+.-+...|...|+++.|++.|.+...-- .......|..+|..-...|+|.....+..+....
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st 216 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAEST 216 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhC
Confidence 356667777888888888888887754320 0113344555666666677777777777766553
No 475
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=31.65 E-value=4.8e+02 Score=25.16 Aligned_cols=18 Identities=28% Similarity=0.231 Sum_probs=12.2
Q ss_pred HhcCCHHHHHHHHHHHcc
Q 047932 332 CKTKNVEEALNLYRKMLP 349 (598)
Q Consensus 332 ~~~~~~~~A~~~~~~~~~ 349 (598)
...++++.|..++.....
T Consensus 194 iglk~fe~Al~~~e~~v~ 211 (422)
T KOG2582|consen 194 IGLKRFERALYLLEICVT 211 (422)
T ss_pred eccccHHHHHHHHHHHHh
Confidence 345677777777777664
No 476
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=31.07 E-value=3e+02 Score=22.54 Aligned_cols=87 Identities=16% Similarity=0.183 Sum_probs=54.3
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCC-HHHHHHHHHHHhhCCCCCCHHHHH
Q 047932 142 TYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGF-VDKAMELFLQMKDENINPNVVTYN 220 (598)
Q Consensus 142 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~ 220 (598)
..++++.-....+.+.-.+.+++.+.......- .-..+...|.+++.+..+... --.+..+|..+.+.+.+.+..-|.
T Consensus 41 fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~-~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~ 119 (145)
T PF13762_consen 41 FINCILNHLASYQNFSGVVSILEHLHFLNTDNI-IGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYS 119 (145)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhHHHH-hhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 356777777777788877777777744321000 002344567777777765555 445667777777766777777777
Q ss_pred HHHHHHHhc
Q 047932 221 SLIHCFSHA 229 (598)
Q Consensus 221 ~l~~~~~~~ 229 (598)
.++.++.+-
T Consensus 120 ~li~~~l~g 128 (145)
T PF13762_consen 120 CLIKAALRG 128 (145)
T ss_pred HHHHHHHcC
Confidence 777766554
No 477
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=31.00 E-value=2.4e+02 Score=21.56 Aligned_cols=26 Identities=27% Similarity=0.450 Sum_probs=13.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhh
Q 047932 394 YNTFIDGLCKNGFVLEALELFCAIGN 419 (598)
Q Consensus 394 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 419 (598)
|..++..|...|..++|++++.+...
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 44455555555555555555555443
No 478
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=29.76 E-value=2.8e+02 Score=31.67 Aligned_cols=127 Identities=13% Similarity=0.042 Sum_probs=75.8
Q ss_pred HHHHHcCCHHHHHH------HHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----CCCC--CCHHHHH
Q 047932 399 DGLCKNGFVLEALE------LFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSR-----VGLL--PNVVTYN 465 (598)
Q Consensus 399 ~~~~~~g~~~~A~~------~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~--p~~~~~~ 465 (598)
......|.+.+|.+ ++......-.+.....|..+...+-+.|+.++|+..-....- .|.. -+...|.
T Consensus 940 q~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~ 1019 (1236)
T KOG1839|consen 940 QEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYG 1019 (1236)
T ss_pred hhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhh
Confidence 33444556665555 555433332244566788888888888888888876654321 1221 1234455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC-----C--CCCCHHHHHHHHHHHHhcCCccccchhHHHHHHHhc
Q 047932 466 IMIHGLCNDGQMDKAHDLFLDMEAK-----G--VEPDCVIFNTIMLGFIRNNETSKSSRGKLMSQMSSC 527 (598)
Q Consensus 466 ~l~~~~~~~g~~~~A~~~~~~~~~~-----~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 527 (598)
.+.-.+...++...|...+.+.... | -||...++..+-..+...++++.|.+ +++.+.+.
T Consensus 1020 nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~--~le~A~a~ 1086 (1236)
T KOG1839|consen 1020 NLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALR--YLESALAK 1086 (1236)
T ss_pred HHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHH--HHHHHHHH
Confidence 5555555666777777777766543 1 23334455555555566688888888 88888765
No 479
>PHA02875 ankyrin repeat protein; Provisional
Probab=29.76 E-value=5.6e+02 Score=25.33 Aligned_cols=140 Identities=18% Similarity=0.169 Sum_probs=63.5
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh--hHHHHHHHHHhCC
Q 047932 190 GVCKEGFVDKAMELFLQMKDENINPNVVT--YNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVV--TFSVIVDELCKNG 265 (598)
Q Consensus 190 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g 265 (598)
..++.|+.+-+..++ +.|..|+... ..+.+...+..|+.+- .+.+.+.|..|+.. .....+...+..|
T Consensus 8 ~A~~~g~~~iv~~Ll----~~g~~~n~~~~~g~tpL~~A~~~~~~~~----v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g 79 (413)
T PHA02875 8 DAILFGELDIARRLL----DIGINPNFEIYDGISPIKLAMKFRDSEA----IKLLMKHGAIPDVKYPDIESELHDAVEEG 79 (413)
T ss_pred HHHHhCCHHHHHHHH----HCCCCCCccCCCCCCHHHHHHHcCCHHH----HHHHHhCCCCccccCCCcccHHHHHHHCC
Confidence 334566665544444 4455544332 2234445556677653 34444555544432 1122345566778
Q ss_pred CHHHHHHHHHHHHhcCCCcCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhh--HHHHHHHHHhcCCHHHH
Q 047932 266 KMEEASRLLDLMIQIGVHPNTF---VYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVS--YTTLINGYCKTKNVEEA 340 (598)
Q Consensus 266 ~~~~a~~~~~~~~~~~~~~~~~---~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~A 340 (598)
+.+.+..+++ .|...+.. .-.+.+...+..|+.+- ++.+.+.|..++... -...+...+..|+.+-+
T Consensus 80 ~~~~v~~Ll~----~~~~~~~~~~~~g~tpL~~A~~~~~~~i----v~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v 151 (413)
T PHA02875 80 DVKAVEELLD----LGKFADDVFYKDGMTPLHLATILKKLDI----MKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGI 151 (413)
T ss_pred CHHHHHHHHH----cCCcccccccCCCCCHHHHHHHhCCHHH----HHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHH
Confidence 8776555443 32211100 01122333445666543 344444554443221 11233444566776655
Q ss_pred HHHHH
Q 047932 341 LNLYR 345 (598)
Q Consensus 341 ~~~~~ 345 (598)
.-+++
T Consensus 152 ~~Ll~ 156 (413)
T PHA02875 152 ELLID 156 (413)
T ss_pred HHHHh
Confidence 55544
No 480
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=29.75 E-value=2.5e+02 Score=21.24 Aligned_cols=53 Identities=11% Similarity=0.158 Sum_probs=30.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 047932 188 IDGVCKEGFVDKAMELFLQMKDENINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQG 246 (598)
Q Consensus 188 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 246 (598)
+..+...|++++|..+.+.+ ..||...|..|.. .+.|-.+.+..-+.++...|
T Consensus 46 lsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 46 LSSLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 34556677777777766555 2456666654433 35555555555555555554
No 481
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=29.09 E-value=4.2e+02 Score=23.62 Aligned_cols=57 Identities=19% Similarity=0.158 Sum_probs=27.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH----HHHhcCCHHHHHHHHHHHH
Q 047932 432 LIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIH----GLCNDGQMDKAHDLFLDME 488 (598)
Q Consensus 432 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~----~~~~~g~~~~A~~~~~~~~ 488 (598)
-+......|+.++|++....+...-+..|...+..|.. =..+.|..++|+++.+.-+
T Consensus 70 ~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~~l~F~Lq~q~lIEliR~~~~eeal~F~q~~L 130 (228)
T KOG2659|consen 70 QIRRAIEEGQIEEAIEKVNQLNPEILDTNRELFFHLQQLHLIELIREGKTEEALEFAQTKL 130 (228)
T ss_pred HHHHHHHhccHHHHHHHHHHhChHHHccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHc
Confidence 34455666666666666665533212223222222111 1235666666666665544
No 482
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=28.07 E-value=5.4e+02 Score=24.66 Aligned_cols=64 Identities=9% Similarity=0.118 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 047932 442 LETAWELFQSLSRVGLLPNV----VTYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFI 507 (598)
Q Consensus 442 ~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 507 (598)
.++...++..++.. -|+. ..|..++......|.++.++.+|++++..|-.|-...-..++..+-
T Consensus 119 ~eei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 119 KEEILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 34566666666653 3443 3466666667777887888888888887777776666666665554
No 483
>PRK12798 chemotaxis protein; Reviewed
Probab=27.66 E-value=6.1e+02 Score=25.08 Aligned_cols=50 Identities=18% Similarity=0.177 Sum_probs=24.4
Q ss_pred cCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHH-hcCCHHHHHHHHHHHh
Q 047932 153 TGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVC-KEGFVDKAMELFLQMK 208 (598)
Q Consensus 153 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~A~~~~~~~~ 208 (598)
.|+..++.+.+..+.... .++....|-.|+.+-. ...++.+|+++|+...
T Consensus 125 ~Gr~~~a~~~La~i~~~~------l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aR 175 (421)
T PRK12798 125 SGRGREARKLLAGVAPEY------LPAELGAYLALVQGNLMVATDPATALKLLDQAR 175 (421)
T ss_pred cCCHHHHHHHhhcCChhh------cCchhhhHHHHHHHHHhcccCHHHHHHHHHHHH
Confidence 455555555555554443 3444444444444322 2334555555555544
No 484
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=27.59 E-value=4.1e+02 Score=23.12 Aligned_cols=35 Identities=17% Similarity=0.087 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHH
Q 047932 392 YIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDII 427 (598)
Q Consensus 392 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 427 (598)
...+.+++.+...|+++.|-+.|.-++... ..|..
T Consensus 42 ~~L~~lLh~~llr~d~~rA~Raf~lLiR~~-~VDiR 76 (199)
T PF04090_consen 42 RVLTDLLHLCLLRGDWDRAYRAFGLLIRCP-EVDIR 76 (199)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHcCC-CCChH
Confidence 345566677777777777777777766543 34433
No 485
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=27.57 E-value=4.7e+02 Score=23.71 Aligned_cols=60 Identities=8% Similarity=-0.050 Sum_probs=41.5
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 047932 144 NTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDE 210 (598)
Q Consensus 144 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 210 (598)
.....++...|++-++++...+++... +.+..+|..-..+.+..=+.++|..=|..+.+.
T Consensus 234 lNy~QC~L~~~e~yevleh~seiL~~~-------~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 234 LNYCQCLLKKEEYYEVLEHCSEILRHH-------PGNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred HhHHHHHhhHHHHHHHHHHHHHHHhcC-------CchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 334455556677777887777777765 566777777777777777777777777777664
No 486
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=27.34 E-value=4.1e+02 Score=23.76 Aligned_cols=52 Identities=15% Similarity=0.070 Sum_probs=26.8
Q ss_pred HHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 047932 402 CKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSR 454 (598)
Q Consensus 402 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 454 (598)
.+.++.+.+.+++.++...- +-....|..+...-.+.|+++.|.+-|++..+
T Consensus 6 ~~~~D~~aaaely~qal~la-p~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ 57 (287)
T COG4976 6 AESGDAEAAAELYNQALELA-PEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLE 57 (287)
T ss_pred cccCChHHHHHHHHHHhhcC-chhhhhhhhcchhhhhcccHHHHHHHHHHHHc
Confidence 34455555555555555432 22344455555555555555555555555555
No 487
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=27.30 E-value=2.7e+02 Score=21.41 Aligned_cols=39 Identities=15% Similarity=0.040 Sum_probs=24.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 047932 467 MIHGLCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGF 506 (598)
Q Consensus 467 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 506 (598)
++..+.++...++|+++++-|.+.| ..+...-..|-..+
T Consensus 67 ViD~lrRC~T~EEALEVInylek~G-EIt~e~A~eLr~~L 105 (128)
T PF09868_consen 67 VIDYLRRCKTDEEALEVINYLEKRG-EITPEEAKELRSIL 105 (128)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 3444566777788888888888776 55655544444333
No 488
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=27.29 E-value=5.3e+02 Score=24.22 Aligned_cols=19 Identities=21% Similarity=0.464 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHcCCHHHHH
Q 047932 393 IYNTFIDGLCKNGFVLEAL 411 (598)
Q Consensus 393 ~~~~l~~~~~~~g~~~~A~ 411 (598)
.|.-++.+++..|+.+-.+
T Consensus 323 ~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 323 QYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred hhhHHHHHHhcCChHHHHH
Confidence 5666777777777766543
No 489
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.04 E-value=2.2e+02 Score=30.83 Aligned_cols=46 Identities=20% Similarity=0.087 Sum_probs=22.9
Q ss_pred HHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 047932 402 CKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLS 453 (598)
Q Consensus 402 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 453 (598)
..+|+.+.|++.-.++- +..+|..|+..-...|+..-|...|++..
T Consensus 654 Le~gnle~ale~akkld------d~d~w~rLge~Al~qgn~~IaEm~yQ~~k 699 (1202)
T KOG0292|consen 654 LECGNLEVALEAAKKLD------DKDVWERLGEEALRQGNHQIAEMCYQRTK 699 (1202)
T ss_pred hhcCCHHHHHHHHHhcC------cHHHHHHHHHHHHHhcchHHHHHHHHHhh
Confidence 34455555554433321 44455555555555555555555555443
No 490
>PF05944 Phage_term_smal: Phage small terminase subunit; InterPro: IPR010270 This entry is represented by Bacteriophage P2, GpM. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage small terminase subunit proteins as well as some related bacterial sequences []. M protein is probably an endonuclease which directs cos cleavage. The Q, P and M proteins are needed to package DNA into proheads and for the conversion of proheads to capsids.; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0019069 viral capsid assembly
Probab=26.94 E-value=3.3e+02 Score=21.82 Aligned_cols=31 Identities=16% Similarity=0.221 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 047932 428 SYSCLIDGLCKIGKLETAWELFQSLSRVGLL 458 (598)
Q Consensus 428 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 458 (598)
++..++-.+...|+++.|+.+.+-+++.|..
T Consensus 50 Vl~~~mvW~~D~Gd~~~AL~~a~yAi~~~l~ 80 (132)
T PF05944_consen 50 VLMTVMVWLFDVGDFDGALDIAEYAIEHGLP 80 (132)
T ss_pred hHHhhHhhhhcccCHHHHHHHHHHHHHcCCC
Confidence 3444555667788888888888888877654
No 491
>PF05944 Phage_term_smal: Phage small terminase subunit; InterPro: IPR010270 This entry is represented by Bacteriophage P2, GpM. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage small terminase subunit proteins as well as some related bacterial sequences []. M protein is probably an endonuclease which directs cos cleavage. The Q, P and M proteins are needed to package DNA into proheads and for the conversion of proheads to capsids.; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0019069 viral capsid assembly
Probab=26.79 E-value=3.4e+02 Score=21.80 Aligned_cols=46 Identities=13% Similarity=0.068 Sum_probs=31.8
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 047932 61 IFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLF 107 (598)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 107 (598)
..+..+..+...+|. .+..++..+...|+++.|+++.+.++..|..
T Consensus 35 ~v~g~L~~g~g~qd~-Vl~~~mvW~~D~Gd~~~AL~~a~yAi~~~l~ 80 (132)
T PF05944_consen 35 WVEGVLASGSGAQDD-VLMTVMVWLFDVGDFDGALDIAEYAIEHGLP 80 (132)
T ss_pred HHHHHHHcCCCCcCc-hHHhhHhhhhcccCHHHHHHHHHHHHHcCCC
Confidence 344444433332443 4556677788999999999999999998853
No 492
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=26.76 E-value=2e+02 Score=19.58 Aligned_cols=46 Identities=15% Similarity=0.151 Sum_probs=21.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHH
Q 047932 355 TVVTYSTLFLGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGL 401 (598)
Q Consensus 355 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 401 (598)
....++.++..+++..-.++++..+.++...|. .+...|..-++.+
T Consensus 7 ~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~L 52 (65)
T PF09454_consen 7 EDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSL 52 (65)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHH
Confidence 334445555555555555555555555555542 3333443333333
No 493
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=26.66 E-value=3.5e+02 Score=21.90 Aligned_cols=24 Identities=8% Similarity=0.016 Sum_probs=12.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC
Q 047932 292 LMDGFCLTGRVNHAKELFVSMESN 315 (598)
Q Consensus 292 ll~~~~~~g~~~~a~~~~~~~~~~ 315 (598)
|.-++.+.++++++.++.+.+.+.
T Consensus 77 LAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 77 LAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred hHHHHHHHhhHHHHHHHHHHHHhh
Confidence 334455555555555555555443
No 494
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=25.93 E-value=3.5e+02 Score=22.82 Aligned_cols=45 Identities=16% Similarity=0.051 Sum_probs=21.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCC
Q 047932 222 LIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGK 266 (598)
Q Consensus 222 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 266 (598)
++..+...++.-.|.++++.+.+.+...+..|....+..+...|-
T Consensus 31 IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Gl 75 (169)
T PRK11639 31 VLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGF 75 (169)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCC
Confidence 333333334444555566655555544444444444444444443
No 495
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=25.46 E-value=4.5e+02 Score=22.77 Aligned_cols=55 Identities=15% Similarity=0.154 Sum_probs=33.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCC--------------CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 047932 431 CLIDGLCKIGKLETAWELFQSLSRVGL--------------LPNVVTYNIMIHGLCNDGQMDKAHDLFL 485 (598)
Q Consensus 431 ~l~~~~~~~g~~~~A~~~~~~~~~~~~--------------~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 485 (598)
+++..|.+..++.++.++++.|.+..+ .+.-...|.-...+.+.|..+.|+.+++
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLr 205 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLR 205 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHh
Confidence 445556666677777777777655311 2223345556666777777777777766
No 496
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=24.82 E-value=3.9e+02 Score=21.87 Aligned_cols=23 Identities=13% Similarity=0.329 Sum_probs=10.5
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHH
Q 047932 255 SVIVDELCKNGKMEEASRLLDLM 277 (598)
Q Consensus 255 ~~l~~~~~~~g~~~~a~~~~~~~ 277 (598)
+.++.-....+++...+.+++.+
T Consensus 43 N~iL~hl~~~~nf~~~v~~L~~l 65 (145)
T PF13762_consen 43 NCILNHLASYQNFSGVVSILEHL 65 (145)
T ss_pred HHHHHHHHHccchHHHHHHHHHH
Confidence 34444444444444444444444
No 497
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=24.67 E-value=1.8e+02 Score=26.61 Aligned_cols=66 Identities=12% Similarity=0.031 Sum_probs=51.6
Q ss_pred HHHHhhccCCcccccCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 047932 37 FLKERSKSSGQGDINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNST 104 (598)
Q Consensus 37 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 104 (598)
.+.+.....-+.+.+.++++.|...-++.+..+|. ++.-+.--+-+|.+.|-+.-|+.-++.....
T Consensus 179 il~rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~--dp~eirDrGliY~ql~c~~vAl~dl~~~~~~ 244 (269)
T COG2912 179 ILSRLLRNLKAALLRELQWELALRVAERLLDLNPE--DPYEIRDRGLIYAQLGCYHVALEDLSYFVEH 244 (269)
T ss_pred HHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhCCC--ChhhccCcHHHHHhcCCchhhHHHHHHHHHh
Confidence 34444444444566888999999999999998887 7777887888889999999999888886654
No 498
>PF04391 DUF533: Protein of unknown function (DUF533); InterPro: IPR007486 Some family members may be secreted or integral membrane proteins.
Probab=24.48 E-value=1.3e+02 Score=25.82 Aligned_cols=80 Identities=16% Similarity=0.144 Sum_probs=44.6
Q ss_pred CCCHHHHHHHHHHHHhcCCccccchhHHHHHHHhcccCCCCCChHHHHHHHHHhCCCCCChhhHHHhh-hcCccccc---
Q 047932 493 EPDCVIFNTIMLGFIRNNETSKSSRGKLMSQMSSCWSMCFQPKTLICSISIMLQKDMSPGDTMFSTAL-LMDPDCSC--- 568 (598)
Q Consensus 493 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~l-~~~P~~~~--- 568 (598)
..|..--..+.......|--.+..+ +++..+.. ++.|+.. ...-.+.+.|.++|.-++ .++|++..
T Consensus 95 ~ID~~Er~~I~~~l~~~g~d~e~~~--~l~~eL~~---P~d~~~l-----a~~v~~~e~A~evY~aS~laid~d~~~Er~ 164 (188)
T PF04391_consen 95 HIDEEERQRIEGALQELGLDAEERA--WLQAELAA---PLDPDAL-----AAAVTDPEQAAEVYLASLLAIDVDTFAERA 164 (188)
T ss_pred CCCHHHHHHHHHHHHHhCCCHHHHH--HHHHHHhC---CCCHHHH-----HHhCCCHHHHHHHHHHHHHHhCCCCHHHHH
Confidence 3344444444444555555555556 66666655 4433322 122256666666665544 55777665
Q ss_pred hhhHhhhhCCCCcc
Q 047932 569 DLESLIHNTDLDQD 582 (598)
Q Consensus 569 ~~~~l~~~~~~~~~ 582 (598)
+++.|...++++++
T Consensus 165 YL~~LA~aL~L~~~ 178 (188)
T PF04391_consen 165 YLDELAQALGLDPD 178 (188)
T ss_pred HHHHHHHHhCcCHH
Confidence 78888888887443
No 499
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=24.41 E-value=5.4e+02 Score=23.36 Aligned_cols=46 Identities=7% Similarity=-0.093 Sum_probs=26.4
Q ss_pred cccchhHHHHHHHhcccCCCCCChHHHHH--------HHHHhCCCCCChhhHHHhh
Q 047932 513 SKSSRGKLMSQMSSCWSMCFQPKTLICSI--------SIMLQKDMSPGDTMFSTAL 560 (598)
Q Consensus 513 ~~A~~~~~~~~~~~~~~~~~~p~~~~~~~--------~~~~~~~~~~a~~~~~~~l 560 (598)
++|.+ .|+.+.+.-...+.|..++... .+...++.++|..+.+.++
T Consensus 145 ~~a~~--aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~af 198 (244)
T smart00101 145 ENTLV--AYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAF 198 (244)
T ss_pred HHHHH--HHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45666 6666544311136676655543 3344678888877666665
No 500
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.38 E-value=3.1e+02 Score=20.60 Aligned_cols=22 Identities=18% Similarity=0.107 Sum_probs=11.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH
Q 047932 291 TLMDGFCLTGRVNHAKELFVSM 312 (598)
Q Consensus 291 ~ll~~~~~~g~~~~a~~~~~~~ 312 (598)
.|...|.+.|+.+.|.+-|+.-
T Consensus 77 hLGlLys~~G~~e~a~~eFetE 98 (121)
T COG4259 77 HLGLLYSNSGKDEQAVREFETE 98 (121)
T ss_pred HHHHHHhhcCChHHHHHHHHHh
Confidence 3444455555555555555443
Done!