Query 047932
Match_columns 598
No_of_seqs 681 out of 3706
Neff 11.5
Searched_HMMs 29240
Date Mon Mar 25 07:44:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047932.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047932hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 2.6E-40 8.9E-45 345.5 36.0 502 52-577 66-594 (597)
2 2xpi_A Anaphase-promoting comp 100.0 3.5E-38 1.2E-42 329.4 37.9 466 48-540 93-587 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 1.2E-28 4.1E-33 242.4 46.9 379 49-510 9-387 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 2.3E-28 7.8E-33 240.5 47.7 365 146-528 5-369 (388)
5 4g26_A Pentatricopeptide repea 100.0 3.1E-28 1.1E-32 242.9 24.1 185 324-508 29-222 (501)
6 4g26_A Pentatricopeptide repea 100.0 6.4E-28 2.2E-32 240.6 24.8 203 126-334 11-223 (501)
7 2gw1_A Mitochondrial precursor 100.0 6.6E-26 2.3E-30 231.9 31.6 448 75-574 6-490 (514)
8 2gw1_A Mitochondrial precursor 99.9 6.7E-25 2.3E-29 224.4 32.8 440 46-539 13-485 (514)
9 2y4t_A DNAJ homolog subfamily 99.9 6.1E-23 2.1E-27 206.1 41.4 365 137-517 23-446 (450)
10 2y4t_A DNAJ homolog subfamily 99.9 4.4E-23 1.5E-27 207.2 39.6 349 56-451 9-405 (450)
11 3fp2_A TPR repeat-containing p 99.9 1.1E-22 3.6E-27 209.3 37.1 402 74-527 24-491 (537)
12 3fp2_A TPR repeat-containing p 99.9 3.7E-23 1.3E-27 212.8 32.6 408 140-573 25-502 (537)
13 2xm6_A Protein corresponding t 99.9 4.9E-19 1.7E-23 179.2 47.5 401 126-570 28-475 (490)
14 3ieg_A DNAJ homolog subfamily 99.9 9.5E-20 3.2E-24 176.7 40.2 321 180-508 2-352 (359)
15 3ieg_A DNAJ homolog subfamily 99.9 1.4E-19 4.9E-24 175.5 39.8 319 139-472 2-351 (359)
16 2xm6_A Protein corresponding t 99.9 4.5E-18 1.5E-22 172.1 51.0 364 58-491 26-433 (490)
17 2ooe_A Cleavage stimulation fa 99.9 3.2E-18 1.1E-22 175.0 44.3 141 62-244 2-158 (530)
18 2ooe_A Cleavage stimulation fa 99.9 8.2E-19 2.8E-23 179.4 39.3 422 128-568 2-498 (530)
19 3hym_B Cell division cycle pro 99.9 3.7E-19 1.3E-23 170.4 32.6 293 213-512 19-321 (330)
20 3hym_B Cell division cycle pro 99.9 1E-18 3.6E-23 167.2 32.8 294 138-471 20-314 (330)
21 1fch_A Peroxisomal targeting s 99.8 5.7E-19 2E-23 172.0 24.8 305 51-416 37-355 (368)
22 1fch_A Peroxisomal targeting s 99.8 6.5E-19 2.2E-23 171.6 25.1 280 218-525 66-357 (368)
23 4g1t_A Interferon-induced prot 99.8 5.5E-17 1.9E-21 163.7 34.9 396 138-572 49-469 (472)
24 4g1t_A Interferon-induced prot 99.8 1.2E-16 4E-21 161.3 36.7 386 179-598 49-462 (472)
25 4eqf_A PEX5-related protein; a 99.8 9.8E-18 3.4E-22 163.0 25.6 234 139-384 64-309 (365)
26 4eqf_A PEX5-related protein; a 99.8 1.3E-17 4.4E-22 162.1 25.4 231 218-453 67-308 (365)
27 1b89_A Protein (clathrin heavy 99.8 3.6E-18 1.2E-22 162.0 20.5 283 49-412 13-303 (449)
28 1xi4_A Clathrin heavy chain; a 99.8 3.6E-14 1.2E-18 150.3 50.7 396 51-510 997-1415(1630)
29 3cv0_A Peroxisome targeting si 99.8 3.4E-17 1.1E-21 156.5 26.0 280 139-452 20-312 (327)
30 3mkr_A Coatomer subunit epsilo 99.8 3.2E-17 1.1E-21 152.7 24.1 218 292-525 40-262 (291)
31 1xi4_A Clathrin heavy chain; a 99.8 7.8E-15 2.7E-19 155.3 44.3 380 73-517 983-1376(1630)
32 3cv0_A Peroxisome targeting si 99.8 5E-17 1.7E-21 155.3 25.5 244 183-454 23-268 (327)
33 3mkr_A Coatomer subunit epsilo 99.8 1.5E-16 5E-21 148.3 26.1 251 190-454 8-263 (291)
34 1b89_A Protein (clathrin heavy 99.8 4.9E-17 1.7E-21 154.3 22.9 351 151-560 14-383 (449)
35 3e4b_A ALGK; tetratricopeptide 99.7 1.6E-15 5.3E-20 150.9 24.2 338 50-421 14-388 (452)
36 3e4b_A ALGK; tetratricopeptide 99.7 4.5E-15 1.6E-19 147.6 27.0 352 141-527 36-421 (452)
37 2pl2_A Hypothetical conserved 99.7 3.6E-15 1.2E-19 132.6 22.3 199 319-525 3-212 (217)
38 3uq3_A Heat shock protein STI1 99.7 1E-14 3.5E-19 133.8 24.5 223 254-490 8-236 (258)
39 2pl2_A Hypothetical conserved 99.7 5.6E-15 1.9E-19 131.4 21.8 200 137-348 2-212 (217)
40 3u4t_A TPR repeat-containing p 99.7 7.3E-15 2.5E-19 136.1 23.0 247 324-578 6-266 (272)
41 3uq3_A Heat shock protein STI1 99.7 2.1E-14 7.3E-19 131.7 25.4 229 181-454 5-235 (258)
42 3spa_A Mtrpol, DNA-directed RN 99.7 2.5E-16 8.6E-21 161.4 13.1 151 180-335 126-286 (1134)
43 4e6h_A MRNA 3'-END-processing 99.7 2.3E-12 7.8E-17 132.3 42.1 431 54-527 47-570 (679)
44 1xnf_A Lipoprotein NLPI; TPR, 99.7 6.6E-15 2.3E-19 136.6 20.9 254 45-344 11-269 (275)
45 3spa_A Mtrpol, DNA-directed RN 99.7 1.6E-16 5.6E-21 162.8 9.9 151 139-300 126-286 (1134)
46 1ouv_A Conserved hypothetical 99.7 1.6E-13 5.5E-18 127.1 29.3 222 285-526 5-250 (273)
47 1ouv_A Conserved hypothetical 99.7 6.7E-13 2.3E-17 122.8 33.2 189 321-526 6-214 (273)
48 3u4t_A TPR repeat-containing p 99.6 4.7E-14 1.6E-18 130.6 24.0 164 218-384 5-170 (272)
49 2h6f_A Protein farnesyltransfe 99.6 3.9E-14 1.3E-18 136.3 23.5 150 139-299 165-322 (382)
50 2h6f_A Protein farnesyltransfe 99.6 1.1E-13 3.8E-18 133.1 26.5 249 140-402 97-364 (382)
51 4e6h_A MRNA 3'-END-processing 99.6 6.3E-12 2.1E-16 129.1 39.8 437 125-578 52-585 (679)
52 2ond_A Cleavage stimulation fa 99.6 4.1E-13 1.4E-17 126.6 28.0 252 303-576 33-306 (308)
53 2ho1_A Type 4 fimbrial biogene 99.6 3.8E-13 1.3E-17 122.9 26.0 201 140-350 37-238 (252)
54 2ho1_A Type 4 fimbrial biogene 99.6 6.6E-13 2.3E-17 121.3 27.3 199 288-490 39-238 (252)
55 2q7f_A YRRB protein; TPR, prot 99.6 9.8E-14 3.4E-18 126.0 20.7 203 138-351 21-223 (243)
56 2q7f_A YRRB protein; TPR, prot 99.6 9.3E-14 3.2E-18 126.1 20.5 209 288-502 25-233 (243)
57 1xnf_A Lipoprotein NLPI; TPR, 99.6 9.1E-14 3.1E-18 128.9 20.3 130 140-279 43-172 (275)
58 2vq2_A PILW, putative fimbrial 99.6 1.1E-12 3.9E-17 117.3 26.9 201 287-490 9-211 (225)
59 2vq2_A PILW, putative fimbrial 99.6 7.5E-13 2.6E-17 118.5 25.6 203 139-350 7-211 (225)
60 3sf4_A G-protein-signaling mod 99.6 9.2E-14 3.2E-18 136.9 19.2 307 179-517 7-368 (406)
61 3sf4_A G-protein-signaling mod 99.6 1.4E-13 4.6E-18 135.7 18.9 303 137-477 6-363 (406)
62 4a1s_A PINS, partner of inscut 99.5 2.2E-13 7.5E-18 134.5 18.8 276 141-454 49-371 (411)
63 2ond_A Cleavage stimulation fa 99.5 5.6E-12 1.9E-16 118.7 27.2 219 56-315 33-270 (308)
64 4a1s_A PINS, partner of inscut 99.5 2.7E-13 9.4E-18 133.8 18.5 277 182-490 49-372 (411)
65 3ro2_A PINS homolog, G-protein 99.5 5.8E-13 2E-17 127.3 18.7 277 141-455 6-332 (338)
66 3ulq_A Response regulator aspa 99.5 2.3E-12 7.9E-17 125.7 22.8 293 191-488 22-366 (383)
67 3vtx_A MAMA; tetratricopeptide 99.5 3.7E-12 1.3E-16 109.9 21.0 163 357-525 6-168 (184)
68 3ro2_A PINS homolog, G-protein 99.5 1.1E-12 3.7E-17 125.4 19.1 132 358-489 185-331 (338)
69 3vtx_A MAMA; tetratricopeptide 99.5 9.5E-12 3.2E-16 107.3 22.6 167 139-315 4-170 (184)
70 3ulq_A Response regulator aspa 99.5 3.8E-12 1.3E-16 124.2 22.3 234 145-382 108-365 (383)
71 4abn_A Tetratricopeptide repea 99.5 2.8E-12 9.7E-17 128.3 20.5 214 55-311 84-317 (474)
72 4abn_A Tetratricopeptide repea 99.5 3.2E-12 1.1E-16 127.9 20.2 216 120-347 83-318 (474)
73 4i17_A Hypothetical protein; T 99.4 6.7E-12 2.3E-16 112.6 18.8 206 355-574 6-221 (228)
74 3nf1_A KLC 1, kinesin light ch 99.4 1.1E-12 3.8E-17 123.9 14.0 172 178-349 24-223 (311)
75 3nf1_A KLC 1, kinesin light ch 99.4 1.8E-12 6.1E-17 122.5 13.3 170 215-384 26-223 (311)
76 3q15_A PSP28, response regulat 99.4 6.9E-11 2.4E-15 115.0 24.7 228 293-526 108-364 (378)
77 1hz4_A MALT regulatory protein 99.4 3.8E-10 1.3E-14 109.6 28.2 274 185-489 18-321 (373)
78 3q15_A PSP28, response regulat 99.4 1.2E-10 4E-15 113.3 24.2 307 179-489 8-364 (378)
79 1hz4_A MALT regulatory protein 99.4 7.4E-10 2.5E-14 107.5 29.2 201 183-383 55-280 (373)
80 4i17_A Hypothetical protein; T 99.3 2.8E-10 9.4E-15 101.9 22.2 208 284-503 5-221 (228)
81 3as5_A MAMA; tetratricopeptide 99.3 2.2E-10 7.7E-15 98.6 20.5 165 141-315 9-173 (186)
82 3as5_A MAMA; tetratricopeptide 99.3 3.2E-10 1.1E-14 97.6 21.2 162 324-489 11-172 (186)
83 4gyw_A UDP-N-acetylglucosamine 99.3 9.8E-11 3.3E-15 121.8 20.9 166 139-314 8-173 (723)
84 4gyw_A UDP-N-acetylglucosamine 99.3 1.2E-10 4E-15 121.3 21.2 163 321-488 9-172 (723)
85 3edt_B KLC 2, kinesin light ch 99.3 5.5E-11 1.9E-15 110.3 16.1 173 50-245 12-198 (283)
86 3mv2_B Coatomer subunit epsilo 99.3 1.5E-09 5.3E-14 98.7 23.7 190 375-573 85-293 (310)
87 3mv2_B Coatomer subunit epsilo 99.2 2.8E-09 9.7E-14 97.0 22.6 188 340-541 85-291 (310)
88 2uy1_A Cleavage stimulation fa 99.2 4.8E-08 1.7E-12 97.5 32.3 106 52-210 7-118 (493)
89 3edt_B KLC 2, kinesin light ch 99.2 2.3E-10 7.9E-15 106.1 14.3 121 263-383 13-154 (283)
90 1qqe_A Vesicular transport pro 99.2 2.4E-09 8.1E-14 99.7 19.6 211 231-488 32-267 (292)
91 1qqe_A Vesicular transport pro 99.1 5.2E-09 1.8E-13 97.4 20.6 166 147-314 44-227 (292)
92 3urz_A Uncharacterized protein 99.1 6.6E-10 2.2E-14 97.7 13.8 52 49-102 14-81 (208)
93 2uy1_A Cleavage stimulation fa 99.1 3.5E-08 1.2E-12 98.5 27.6 349 154-527 28-413 (493)
94 3qky_A Outer membrane assembly 99.1 3.6E-09 1.2E-13 96.8 18.6 212 285-517 14-253 (261)
95 4ga2_A E3 SUMO-protein ligase 99.1 4.2E-10 1.5E-14 92.9 10.8 145 46-231 4-149 (150)
96 3dra_A Protein farnesyltransfe 99.1 1.6E-07 5.6E-12 86.4 28.8 231 55-327 49-299 (306)
97 3qky_A Outer membrane assembly 99.1 5.9E-09 2E-13 95.4 19.0 101 138-245 13-126 (261)
98 2pzi_A Probable serine/threoni 99.1 8.6E-10 3E-14 115.4 14.4 172 50-265 402-582 (681)
99 3urz_A Uncharacterized protein 99.1 8.1E-09 2.8E-13 90.6 17.7 181 140-350 4-186 (208)
100 2fo7_A Synthetic consensus TPR 99.1 1.1E-08 3.7E-13 82.5 17.4 130 142-280 3-132 (136)
101 2fo7_A Synthetic consensus TPR 99.1 7.9E-09 2.7E-13 83.3 16.2 128 394-526 4-131 (136)
102 2r5s_A Uncharacterized protein 99.0 1.3E-09 4.3E-14 93.0 11.1 154 49-243 16-171 (176)
103 3dra_A Protein farnesyltransfe 99.0 4.3E-07 1.5E-11 83.6 28.6 235 151-396 43-298 (306)
104 4ga2_A E3 SUMO-protein ligase 99.0 1.5E-09 5E-14 89.6 10.8 144 364-511 5-149 (150)
105 2pzi_A Probable serine/threoni 99.0 3.6E-09 1.2E-13 110.8 15.8 177 332-514 402-586 (681)
106 3rjv_A Putative SEL1 repeat pr 99.0 4.2E-08 1.4E-12 86.2 20.4 176 123-316 4-198 (212)
107 2vsy_A XCC0866; transferase, g 99.0 1.1E-08 3.6E-13 105.4 18.2 154 52-246 2-158 (568)
108 3rjv_A Putative SEL1 repeat pr 99.0 4.4E-08 1.5E-12 86.1 19.7 91 253-350 20-118 (212)
109 2r5s_A Uncharacterized protein 99.0 1E-08 3.5E-13 87.3 14.0 163 141-313 7-171 (176)
110 3qou_A Protein YBBN; thioredox 98.9 3.7E-08 1.3E-12 91.2 17.1 166 138-313 115-282 (287)
111 2yhc_A BAMD, UPF0169 lipoprote 98.9 1.3E-07 4.3E-12 84.1 20.0 189 74-316 3-214 (225)
112 2yhc_A BAMD, UPF0169 lipoprote 98.9 1.7E-07 6E-12 83.2 20.2 190 139-352 3-215 (225)
113 3qou_A Protein YBBN; thioredox 98.9 4.2E-08 1.4E-12 90.9 16.3 163 285-451 116-280 (287)
114 2vsy_A XCC0866; transferase, g 98.9 5.8E-08 2E-12 99.8 18.8 154 153-316 2-158 (568)
115 2ifu_A Gamma-SNAP; membrane fu 98.9 4.7E-08 1.6E-12 91.6 15.3 163 153-348 4-182 (307)
116 4f3v_A ESX-1 secretion system 98.8 1.3E-07 4.5E-12 84.9 16.9 210 51-281 18-238 (282)
117 2ifu_A Gamma-SNAP; membrane fu 98.8 8.6E-08 3E-12 89.8 16.7 137 140-278 76-222 (307)
118 3q7a_A Farnesyltransferase alp 98.8 5.3E-06 1.8E-10 77.2 26.7 174 52-267 67-258 (349)
119 4gco_A Protein STI-1; structur 98.8 2.6E-07 8.8E-12 73.3 15.3 111 391-504 13-123 (126)
120 3q7a_A Farnesyltransferase alp 98.8 6.4E-06 2.2E-10 76.6 26.2 176 150-336 64-257 (349)
121 2e2e_A Formate-dependent nitri 98.8 9.5E-08 3.2E-12 81.3 12.9 126 46-211 17-145 (177)
122 2qfc_A PLCR protein; TPR, HTH, 98.8 5.5E-06 1.9E-10 76.9 25.8 172 141-313 76-264 (293)
123 1hh8_A P67PHOX, NCF-2, neutrop 98.8 7.3E-07 2.5E-11 78.4 18.8 130 141-281 7-151 (213)
124 1hh8_A P67PHOX, NCF-2, neutrop 98.7 3.8E-07 1.3E-11 80.2 16.2 127 393-527 8-150 (213)
125 4gco_A Protein STI-1; structur 98.7 3.8E-07 1.3E-11 72.3 14.3 97 141-245 14-110 (126)
126 3u3w_A Transcriptional activat 98.7 6.7E-06 2.3E-10 76.3 25.0 161 328-488 82-264 (293)
127 3dss_A Geranylgeranyl transfer 98.7 1.2E-06 4.1E-11 81.1 19.3 190 372-573 90-315 (331)
128 3gyz_A Chaperone protein IPGC; 98.7 3.1E-08 1E-12 81.2 7.6 98 426-527 36-133 (151)
129 3u3w_A Transcriptional activat 98.7 7.5E-07 2.6E-11 82.8 17.9 166 144-314 79-265 (293)
130 2c2l_A CHIP, carboxy terminus 98.7 3.5E-07 1.2E-11 84.3 15.4 99 139-245 3-101 (281)
131 2vyi_A SGTA protein; chaperone 98.7 5.9E-07 2E-11 71.6 14.9 120 390-512 11-130 (131)
132 1p5q_A FKBP52, FK506-binding p 98.7 2.5E-08 8.5E-13 94.7 7.3 167 51-243 125-292 (336)
133 1a17_A Serine/threonine protei 98.7 6.2E-07 2.1E-11 75.1 15.1 128 393-525 15-144 (166)
134 1a17_A Serine/threonine protei 98.7 8.9E-07 3E-11 74.1 15.8 128 141-277 14-143 (166)
135 1na0_A Designed protein CTPR3; 98.7 1.1E-06 3.8E-11 69.3 15.5 116 391-509 9-124 (125)
136 2vgx_A Chaperone SYCD; alterna 98.7 9.4E-08 3.2E-12 78.4 9.3 111 60-210 8-118 (148)
137 2qfc_A PLCR protein; TPR, HTH, 98.7 4.3E-06 1.5E-10 77.6 21.6 165 324-488 78-264 (293)
138 2lni_A Stress-induced-phosphop 98.6 7E-07 2.4E-11 71.5 14.0 119 389-510 14-132 (133)
139 2lni_A Stress-induced-phosphop 98.6 9.8E-07 3.4E-11 70.6 14.2 98 140-245 16-113 (133)
140 1na0_A Designed protein CTPR3; 98.6 1.3E-06 4.3E-11 68.9 14.7 98 140-245 9-106 (125)
141 2vgx_A Chaperone SYCD; alterna 98.6 1.2E-07 4.2E-12 77.7 8.5 96 427-526 22-117 (148)
142 3gyz_A Chaperone protein IPGC; 98.6 5.7E-07 1.9E-11 73.6 12.3 96 142-245 38-133 (151)
143 3gw4_A Uncharacterized protein 98.6 8E-07 2.7E-11 77.4 14.2 133 357-489 27-175 (203)
144 2vyi_A SGTA protein; chaperone 98.6 1.5E-06 5E-11 69.2 14.0 116 141-265 13-128 (131)
145 4f3v_A ESX-1 secretion system 98.6 2.4E-06 8E-11 76.8 16.4 187 152-350 18-237 (282)
146 2c2l_A CHIP, carboxy terminus 98.6 5.2E-07 1.8E-11 83.1 12.7 95 217-313 5-99 (281)
147 3gw4_A Uncharacterized protein 98.6 6.9E-07 2.4E-11 77.8 12.9 156 151-313 3-174 (203)
148 3dss_A Geranylgeranyl transfer 98.5 0.00012 4E-09 67.8 27.4 190 150-350 39-267 (331)
149 1p5q_A FKBP52, FK506-binding p 98.5 1.3E-06 4.4E-11 82.8 14.5 130 392-525 148-292 (336)
150 2xcb_A PCRH, regulatory protei 98.5 4.4E-07 1.5E-11 73.8 9.4 108 62-209 7-114 (142)
151 2e2e_A Formate-dependent nitri 98.5 1.2E-06 4E-11 74.5 12.2 122 151-281 21-145 (177)
152 4gcn_A Protein STI-1; structur 98.5 2.6E-06 8.9E-11 67.5 13.3 107 393-502 10-122 (127)
153 1elw_A TPR1-domain of HOP; HOP 98.5 7.6E-06 2.6E-10 63.5 15.9 109 392-503 5-113 (118)
154 3upv_A Heat shock protein STI1 98.5 3.1E-06 1.1E-10 67.0 13.5 98 140-245 4-101 (126)
155 4gcn_A Protein STI-1; structur 98.5 2.6E-06 8.9E-11 67.5 12.7 97 141-244 9-111 (127)
156 2fbn_A 70 kDa peptidylprolyl i 98.5 2.6E-07 9E-12 80.2 7.3 168 51-243 16-184 (198)
157 3upv_A Heat shock protein STI1 98.5 6E-06 2.1E-10 65.3 14.5 96 392-489 5-100 (126)
158 2xcb_A PCRH, regulatory protei 98.4 2.9E-06 1E-10 68.9 12.2 98 140-245 18-115 (142)
159 1elw_A TPR1-domain of HOP; HOP 98.4 9.7E-06 3.3E-10 62.9 14.7 98 140-245 4-101 (118)
160 3q49_B STIP1 homology and U bo 98.4 3.9E-06 1.3E-10 67.6 12.1 98 390-489 8-105 (137)
161 1wao_1 Serine/threonine protei 98.4 1.6E-06 5.5E-11 86.3 11.7 123 44-206 11-135 (477)
162 2fbn_A 70 kDa peptidylprolyl i 98.4 1E-05 3.4E-10 70.0 14.9 129 393-525 40-184 (198)
163 2dba_A Smooth muscle cell asso 98.4 2E-05 6.9E-10 64.1 15.8 111 390-504 27-141 (148)
164 3sz7_A HSC70 cochaperone (SGT) 98.3 8.3E-06 2.8E-10 68.1 13.6 99 139-245 10-108 (164)
165 3sz7_A HSC70 cochaperone (SGT) 98.3 8.9E-06 3E-10 67.9 13.8 99 390-490 10-108 (164)
166 1elr_A TPR2A-domain of HOP; HO 98.3 5.2E-06 1.8E-10 66.0 11.8 113 392-507 5-123 (131)
167 2kck_A TPR repeat; tetratricop 98.3 5.3E-06 1.8E-10 63.8 11.4 97 141-245 7-106 (112)
168 3q49_B STIP1 homology and U bo 98.3 1.1E-05 3.8E-10 64.8 13.7 98 139-244 8-105 (137)
169 1elr_A TPR2A-domain of HOP; HO 98.3 5E-06 1.7E-10 66.1 10.9 98 141-245 5-108 (131)
170 1hxi_A PEX5, peroxisome target 98.3 4.5E-06 1.6E-10 65.4 10.2 90 432-525 23-112 (121)
171 2if4_A ATFKBP42; FKBP-like, al 98.3 1.2E-06 3.9E-11 83.2 7.9 151 391-568 179-334 (338)
172 4b4t_Q 26S proteasome regulato 98.3 1.7E-05 5.8E-10 78.3 16.7 55 49-103 14-83 (434)
173 1hxi_A PEX5, peroxisome target 98.3 6.2E-06 2.1E-10 64.7 10.7 96 142-245 19-114 (121)
174 1dce_A Protein (RAB geranylger 98.3 9.6E-06 3.3E-10 82.2 14.7 163 407-579 45-238 (567)
175 2kck_A TPR repeat; tetratricop 98.3 1E-05 3.4E-10 62.2 11.7 99 180-280 5-106 (112)
176 1kt0_A FKBP51, 51 kDa FK506-bi 98.3 6E-07 2.1E-11 89.1 5.6 161 51-237 246-406 (457)
177 2hr2_A Hypothetical protein; a 98.2 1E-06 3.4E-11 71.3 5.3 107 464-573 14-142 (159)
178 4b4t_Q 26S proteasome regulato 98.2 6.1E-05 2.1E-09 74.3 19.4 197 258-454 11-244 (434)
179 2dba_A Smooth muscle cell asso 98.2 2.8E-05 9.6E-10 63.3 14.3 98 139-245 27-128 (148)
180 3k9i_A BH0479 protein; putativ 98.2 4.2E-06 1.4E-10 65.2 8.2 86 404-490 3-90 (117)
181 1dce_A Protein (RAB geranylger 98.2 2.5E-05 8.6E-10 79.2 15.4 186 371-567 44-272 (567)
182 3rkv_A Putative peptidylprolyl 98.2 1.5E-05 5.1E-10 66.3 11.7 66 425-491 62-127 (162)
183 2xev_A YBGF; tetratricopeptide 98.2 5.7E-05 2E-09 59.7 14.7 95 143-245 5-105 (129)
184 1kt0_A FKBP51, 51 kDa FK506-bi 98.2 1.5E-05 5.2E-10 78.9 13.1 97 426-525 317-413 (457)
185 2xev_A YBGF; tetratricopeptide 98.2 8.1E-05 2.8E-09 58.8 14.9 92 397-490 8-105 (129)
186 1wao_1 Serine/threonine protei 98.2 7.5E-06 2.6E-10 81.5 10.5 118 400-522 15-134 (477)
187 3k9i_A BH0479 protein; putativ 98.1 3.7E-06 1.3E-10 65.6 6.0 87 51-170 2-91 (117)
188 3ro3_A PINS homolog, G-protein 98.1 2.2E-05 7.5E-10 65.0 10.9 96 393-488 51-156 (164)
189 1ihg_A Cyclophilin 40; ppiase 98.1 2.7E-05 9.2E-10 74.6 12.5 91 425-517 272-362 (370)
190 3ro3_A PINS homolog, G-protein 98.1 2.6E-05 9E-10 64.5 11.1 133 181-313 9-156 (164)
191 3rkv_A Putative peptidylprolyl 98.1 5.7E-05 2E-09 62.7 12.8 105 140-245 11-126 (162)
192 1ihg_A Cyclophilin 40; ppiase 98.0 4.9E-05 1.7E-09 72.7 13.3 104 141-245 224-336 (370)
193 3n71_A Histone lysine methyltr 98.0 1.3E-05 4.6E-10 79.1 8.7 138 49-209 319-463 (490)
194 2hr2_A Hypothetical protein; a 98.0 0.00013 4.6E-09 58.9 12.8 96 394-489 14-130 (159)
195 2l6j_A TPR repeat-containing p 98.0 2.7E-05 9.3E-10 59.7 8.3 97 425-525 3-105 (111)
196 2if4_A ATFKBP42; FKBP-like, al 97.9 1.7E-05 5.7E-10 75.1 8.0 149 356-527 179-328 (338)
197 1klx_A Cysteine rich protein B 97.9 0.0005 1.7E-08 55.0 15.3 110 371-491 10-127 (138)
198 1zu2_A Mitochondrial import re 97.9 5.4E-05 1.8E-09 61.0 8.9 109 50-189 13-132 (158)
199 2kat_A Uncharacterized protein 97.8 8.4E-05 2.9E-09 57.4 8.6 82 56-170 2-83 (115)
200 1klx_A Cysteine rich protein B 97.8 0.00082 2.8E-08 53.7 14.5 88 187-280 31-126 (138)
201 2l6j_A TPR repeat-containing p 97.8 9.7E-05 3.3E-09 56.5 8.7 93 460-560 3-105 (111)
202 3n71_A Histone lysine methyltr 97.8 0.00011 3.8E-09 72.6 10.5 124 191-314 319-463 (490)
203 1na3_A Designed protein CTPR2; 97.7 0.00036 1.2E-08 50.9 10.0 80 140-227 9-88 (91)
204 1na3_A Designed protein CTPR2; 97.7 0.00052 1.8E-08 50.0 10.8 82 426-509 9-90 (91)
205 2kat_A Uncharacterized protein 97.6 0.00048 1.6E-08 53.0 10.2 79 158-244 3-81 (115)
206 1zu2_A Mitochondrial import re 97.6 0.00018 6.3E-09 57.9 7.8 99 150-258 12-131 (158)
207 2kc7_A BFR218_protein; tetratr 97.5 5.6E-05 1.9E-09 56.5 2.9 89 468-568 7-96 (99)
208 3ma5_A Tetratricopeptide repea 97.4 0.0009 3.1E-08 49.9 8.5 64 425-489 6-69 (100)
209 3ma5_A Tetratricopeptide repea 97.3 0.0012 4E-08 49.3 8.7 65 138-209 5-69 (100)
210 3qww_A SET and MYND domain-con 97.2 0.00096 3.3E-08 64.7 8.8 94 51-168 310-410 (433)
211 3ly7_A Transcriptional activat 96.9 0.018 6.1E-07 53.6 14.0 74 423-500 274-347 (372)
212 3bee_A Putative YFRE protein; 96.9 0.0018 6.3E-08 47.2 6.1 49 55-105 25-73 (93)
213 3ly7_A Transcriptional activat 96.9 0.025 8.7E-07 52.5 14.8 135 137-280 191-339 (372)
214 3u64_A Protein TP_0956; tetrat 96.9 0.023 7.8E-07 50.6 13.8 85 120-213 178-272 (301)
215 2kc7_A BFR218_protein; tetratr 96.8 0.0033 1.1E-07 46.5 6.8 58 146-210 6-64 (99)
216 3qwp_A SET and MYND domain-con 96.7 0.0086 2.9E-07 58.1 10.7 99 146-244 293-399 (429)
217 3mkq_A Coatomer beta'-subunit; 96.7 0.17 5.8E-06 54.1 21.9 125 226-383 609-734 (814)
218 3qww_A SET and MYND domain-con 96.7 0.0035 1.2E-07 60.8 7.7 91 153-243 311-409 (433)
219 3qwp_A SET and MYND domain-con 96.6 0.014 4.8E-07 56.7 11.4 92 398-489 294-399 (429)
220 3u64_A Protein TP_0956; tetrat 96.4 0.48 1.7E-05 42.2 20.3 92 156-255 179-281 (301)
221 3bee_A Putative YFRE protein; 96.4 0.029 9.9E-07 40.8 9.3 65 139-210 5-72 (93)
222 1pc2_A Mitochondria fission pr 96.3 0.027 9.2E-07 44.8 9.5 81 408-490 15-100 (152)
223 1pc2_A Mitochondria fission pr 96.1 0.043 1.5E-06 43.6 9.6 91 442-541 14-109 (152)
224 3mkq_A Coatomer beta'-subunit; 96.0 0.51 1.8E-05 50.3 21.0 100 260-383 608-708 (814)
225 3mkq_B Coatomer subunit alpha; 95.9 0.56 1.9E-05 38.3 17.0 100 296-416 15-114 (177)
226 2v5f_A Prolyl 4-hydroxylase su 95.8 0.12 4E-06 38.5 10.4 64 391-454 5-74 (104)
227 4h7y_A Dual specificity protei 95.7 0.11 3.8E-06 40.7 10.0 96 73-170 11-124 (161)
228 2v5f_A Prolyl 4-hydroxylase su 95.7 0.065 2.2E-06 39.9 8.7 64 427-490 6-75 (104)
229 4h7y_A Dual specificity protei 95.5 0.15 5E-06 40.0 10.0 65 438-504 72-136 (161)
230 3mkq_B Coatomer subunit alpha; 95.5 0.84 2.9E-05 37.2 16.1 103 189-312 13-115 (177)
231 1wy6_A Hypothetical protein ST 95.0 0.88 3E-05 34.9 14.9 61 396-457 96-156 (172)
232 1wy6_A Hypothetical protein ST 94.9 0.96 3.3E-05 34.7 16.6 140 262-423 18-157 (172)
233 1nzn_A CGI-135 protein, fissio 94.9 0.25 8.4E-06 37.7 9.4 84 405-490 15-103 (126)
234 1nzn_A CGI-135 protein, fissio 94.3 0.39 1.3E-05 36.6 9.4 89 441-538 16-109 (126)
235 3lvg_A Clathrin heavy chain 1; 93.9 0.002 6.7E-08 61.2 -4.8 257 51-342 37-325 (624)
236 4ady_A RPN2, 26S proteasome re 93.7 8.4 0.00029 40.8 33.9 267 261-541 384-666 (963)
237 3lpz_A GET4 (YOR164C homolog); 91.6 7.9 0.00027 35.4 17.8 172 77-278 37-214 (336)
238 2wpv_A GET4, UPF0363 protein Y 91.6 7.7 0.00026 35.2 18.4 173 77-278 35-215 (312)
239 2ff4_A Probable regulatory pro 91.1 0.84 2.9E-05 43.5 9.2 68 144-218 175-247 (388)
240 4fhn_B Nucleoporin NUP120; pro 91.1 7.2 0.00024 43.3 17.8 130 253-384 901-1049(1139)
241 3lvg_A Clathrin heavy chain 1; 91.0 3.2E-05 1.1E-09 73.1 -20.6 265 180-481 53-324 (624)
242 4b4t_P 26S proteasome regulato 90.7 13 0.00043 36.1 20.5 49 230-278 30-83 (445)
243 2ff4_A Probable regulatory pro 90.6 2.1 7.1E-05 40.7 11.4 74 429-503 174-252 (388)
244 3ffl_A Anaphase-promoting comp 90.2 1.8 6.2E-05 34.7 8.7 23 255-277 67-89 (167)
245 4gns_B Protein CSD3, chitin bi 90.2 1.5 5.2E-05 45.3 10.6 52 435-487 346-397 (754)
246 3o48_A Mitochondria fission 1 90.1 2.4 8.1E-05 32.5 8.9 67 423-489 37-106 (134)
247 4gns_B Protein CSD3, chitin bi 90.1 1.9 6.5E-05 44.6 11.1 51 458-510 610-660 (754)
248 3o48_A Mitochondria fission 1 90.0 4.7 0.00016 30.9 10.4 67 459-527 38-107 (134)
249 2wpv_A GET4, UPF0363 protein Y 89.9 11 0.00038 34.1 18.7 114 182-310 34-158 (312)
250 4fhn_B Nucleoporin NUP120; pro 89.1 6.8 0.00023 43.4 15.6 150 221-377 817-992 (1139)
251 4ady_A RPN2, 26S proteasome re 87.7 32 0.0011 36.6 35.0 154 295-454 499-657 (963)
252 1qsa_A Protein (soluble lytic 87.6 26 0.00089 35.5 27.5 21 504-526 389-409 (618)
253 1y8m_A FIS1; mitochondria, unk 87.5 8.6 0.00029 29.9 11.6 67 423-489 36-105 (144)
254 1v54_E Cytochrome C oxidase po 87.1 3.4 0.00011 29.8 7.3 60 123-189 28-87 (109)
255 3ffl_A Anaphase-promoting comp 87.1 4.6 0.00016 32.4 9.1 123 180-315 19-151 (167)
256 3lpz_A GET4 (YOR164C homolog); 85.7 21 0.00073 32.6 20.2 168 182-383 36-214 (336)
257 1y8m_A FIS1; mitochondria, unk 85.5 11 0.00038 29.3 12.6 67 459-527 37-106 (144)
258 1zbp_A Hypothetical protein VP 85.4 8 0.00027 33.9 10.5 112 49-169 7-129 (273)
259 4b4t_P 26S proteasome regulato 85.0 29 0.00098 33.5 20.4 189 265-454 30-246 (445)
260 1v54_E Cytochrome C oxidase po 81.1 13 0.00045 26.8 9.6 63 196-259 25-87 (109)
261 4b4t_R RPN7, 26S proteasome re 81.1 14 0.00048 35.5 11.7 98 182-279 132-236 (429)
262 4a1g_A Mitotic checkpoint seri 77.2 22 0.00074 28.1 9.4 52 57-108 83-134 (152)
263 3esl_A Checkpoint serine/threo 76.8 31 0.0011 28.7 10.6 56 440-495 93-149 (202)
264 2y69_E Cytochrome C oxidase su 76.4 24 0.00081 27.1 9.3 30 422-451 84-113 (152)
265 1zbp_A Hypothetical protein VP 76.3 5.6 0.00019 34.9 6.4 55 149-210 6-60 (273)
266 2y69_E Cytochrome C oxidase su 76.0 24 0.00083 27.0 9.6 62 197-259 69-130 (152)
267 3txn_A 26S proteasome regulato 72.3 66 0.0022 30.3 21.3 93 186-278 104-208 (394)
268 3esl_A Checkpoint serine/threo 72.0 32 0.0011 28.6 9.6 56 194-249 92-148 (202)
269 2wvi_A Mitotic checkpoint seri 69.6 42 0.0014 26.9 10.4 53 57-109 78-130 (164)
270 4b4t_R RPN7, 26S proteasome re 69.0 83 0.0028 30.1 16.7 101 141-245 132-237 (429)
271 4aez_C MAD3, mitotic spindle c 60.3 50 0.0017 28.0 8.6 47 92-138 131-183 (223)
272 4a1g_A Mitotic checkpoint seri 59.7 62 0.0021 25.5 9.9 51 445-495 84-135 (152)
273 3eiq_C Programmed cell death p 57.4 1.2E+02 0.0041 28.0 12.1 71 324-395 220-292 (358)
274 4b4t_S RPN3, 26S proteasome re 55.8 75 0.0026 31.1 10.2 23 80-102 141-163 (523)
275 2wvi_A Mitotic checkpoint seri 55.7 78 0.0027 25.3 10.1 52 445-496 79-131 (164)
276 2p58_C Putative type III secre 54.0 59 0.002 23.4 8.2 51 189-245 48-98 (116)
277 3txn_A 26S proteasome regulato 52.7 1.5E+02 0.0052 27.8 27.7 166 182-348 20-208 (394)
278 2uwj_G Type III export protein 46.4 79 0.0027 22.7 7.8 52 189-246 47-98 (115)
279 4aez_C MAD3, mitotic spindle c 46.0 1.4E+02 0.0047 25.3 10.7 115 55-170 51-180 (223)
280 2d2s_A Exocyst complex compone 39.5 1.8E+02 0.006 25.0 9.1 23 187-209 24-46 (235)
281 4b4t_S RPN3, 26S proteasome re 38.7 2.7E+02 0.0092 27.3 11.1 65 216-280 231-299 (523)
282 2uwj_G Type III export protein 38.1 1.1E+02 0.0038 22.0 8.5 50 331-386 49-98 (115)
283 4gq2_M Nucleoporin NUP120; bet 37.8 3.1E+02 0.011 29.5 12.8 108 187-300 816-950 (950)
284 4gq2_M Nucleoporin NUP120; bet 36.8 2.8E+02 0.0096 29.9 12.2 108 222-335 816-950 (950)
285 2p58_C Putative type III secre 36.8 1.2E+02 0.004 21.9 9.5 50 331-386 50-99 (116)
286 2d2s_A Exocyst complex compone 35.1 2.1E+02 0.0073 24.4 9.7 89 222-313 24-118 (235)
287 3ltm_A Alpha-REP4; protein eng 33.1 2E+02 0.0069 23.6 18.5 91 390-489 94-184 (211)
288 1wdy_A 2-5A-dependent ribonucl 31.6 1.9E+02 0.0066 24.9 8.8 20 145-164 7-26 (285)
289 2nsz_A Programmed cell death p 31.1 1.7E+02 0.0059 22.1 8.0 23 326-348 12-34 (129)
290 2ion_A PDCD4, programmed cell 31.0 1.4E+02 0.0048 23.4 6.6 23 326-348 14-36 (152)
291 3bge_A Predicted ATPase; struc 29.9 2.4E+02 0.0081 23.3 8.1 93 327-419 10-110 (201)
292 2ijq_A Hypothetical protein; s 29.8 2.1E+02 0.0072 22.7 8.3 52 438-489 44-103 (161)
293 1qsa_A Protein (soluble lytic 28.0 4.8E+02 0.016 26.3 38.7 48 433-483 388-435 (618)
294 2xig_A Ferric uptake regulatio 26.6 2E+02 0.0069 22.4 6.9 44 222-265 32-75 (150)
295 3pvs_A Replication-associated 26.4 4.3E+02 0.015 25.2 14.0 30 214-245 192-221 (447)
296 1wdy_A 2-5A-dependent ribonucl 26.1 85 0.0029 27.3 5.3 14 332-345 227-240 (285)
297 3pvs_A Replication-associated 26.0 4.4E+02 0.015 25.2 13.6 25 333-357 267-291 (447)
298 3ubw_A 14-3-3E, 14-3-3 protein 24.2 97 0.0033 27.0 4.8 170 390-561 30-227 (261)
299 3ygs_P Procaspase 9; apoptosis 22.8 1.2E+02 0.0041 21.5 4.5 40 154-203 51-90 (97)
300 2fe3_A Peroxide operon regulat 22.7 2.1E+02 0.007 22.1 6.2 36 265-300 35-70 (145)
301 1bpo_A Protein (clathrin); cla 22.0 5.4E+02 0.018 24.8 10.3 111 194-309 342-452 (494)
302 2f6m_A Suppressor protein STP2 21.9 1.7E+02 0.0059 19.0 4.4 42 465-507 6-47 (65)
303 2ion_A PDCD4, programmed cell 21.3 3E+02 0.01 21.5 8.4 64 143-213 12-77 (152)
304 2r9g_A AAA ATPase, central reg 21.2 3.5E+02 0.012 22.4 9.0 87 262-349 25-116 (204)
305 3eu9_A Huntingtin-interacting 20.6 2.6E+02 0.0088 23.2 7.2 18 187-204 45-62 (240)
306 2zu6_B Programmed cell death p 20.5 4.7E+02 0.016 23.5 11.6 26 184-209 6-31 (307)
307 3lxu_X Tripeptidyl-peptidase 2 20.5 6.9E+02 0.024 28.0 11.4 48 36-86 1105-1152(1354)
308 3bu8_A Telomeric repeat-bindin 20.4 3.9E+02 0.013 22.5 11.2 51 120-170 87-144 (235)
309 3eyy_A Putative iron uptake re 20.3 2.5E+02 0.0086 21.6 6.3 63 450-514 8-70 (145)
310 3ltm_A Alpha-REP4; protein eng 20.0 3.6E+02 0.012 22.0 18.7 122 320-454 63-184 (211)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.6e-40 Score=345.52 Aligned_cols=502 Identities=10% Similarity=0.007 Sum_probs=404.5
Q ss_pred CCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhc-----cHHHHHH
Q 047932 52 LITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINC-----RIMEAAA 126 (598)
Q Consensus 52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~-----~~~~a~~ 126 (598)
.|.+..+...+... |. +++..|+.++..+.+.|++++|+.+|+++... .|+..++..+... ++++|+.
T Consensus 66 ~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~ 138 (597)
T 2xpi_A 66 DGSFLKERNAQNTD----SL-SREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKC 138 (597)
T ss_dssp ---------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCccCCCCCccccc----hH-HHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHH
Confidence 44455555555433 32 57889999999999999999999999999854 6787777665554 8999999
Q ss_pred HHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCC---------CCccccCCCHhHHHHHHHHHHhcCCH
Q 047932 127 LFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNG---------EFGVVCKPDTVTYNTIIDGVCKEGFV 197 (598)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---------~~~~~~~~~~~~~~~li~~~~~~g~~ 197 (598)
+|+++... +++..+++.++.+|.+.|++++|.++|+++..... ......+.+..+|+.++.+|.+.|++
T Consensus 139 ~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 216 (597)
T 2xpi_A 139 LLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNF 216 (597)
T ss_dssp HHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCH
Confidence 99998654 57889999999999999999999999995332210 00001244688999999999999999
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHH--H-HHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHH
Q 047932 198 DKAMELFLQMKDENINPNVVTYNSLIHCFSHADDWNEAKR--L-FIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLL 274 (598)
Q Consensus 198 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~--~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 274 (598)
++|.++|++|.+.+.. +...+..+...+...+..+.+.. + +..+...+..+...+|+.++..|.+.|++++|.++|
T Consensus 217 ~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 295 (597)
T 2xpi_A 217 DRAKECYKEALMVDAK-CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYL 295 (597)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCch-hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHH
Confidence 9999999999986432 56677767665554433322221 1 444444444444556777788889999999999999
Q ss_pred HHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCC
Q 047932 275 DLMIQIGVHPNTFVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRP 354 (598)
Q Consensus 275 ~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 354 (598)
+++.+. +++..++..++.+|.+.|++++|.++|+++.+.+ +.+..++..++.++.+.|++++|..+++++.... +.
T Consensus 296 ~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~ 371 (597)
T 2xpi_A 296 SSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PE 371 (597)
T ss_dssp HTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TT
T ss_pred HHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cc
Confidence 999875 5789999999999999999999999999998775 4578889999999999999999999999998653 34
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 047932 355 TVVTYSTLFLGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLID 434 (598)
Q Consensus 355 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 434 (598)
+..++..++..|.+.|++++|..+|+++.+.. +.+..+++.++.++.+.|++++|+.+|+++.+.. +.+..+|..++.
T Consensus 372 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 449 (597)
T 2xpi_A 372 KAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGM 449 (597)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHH
Confidence 78899999999999999999999999998753 5578899999999999999999999999998765 457889999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHh
Q 047932 435 GLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEAK----GVEPD--CVIFNTIMLGFIR 508 (598)
Q Consensus 435 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~ 508 (598)
+|.+.|++++|.++|+++.+.. +.+..+|+.++..|.+.|++++|+++|+++.+. +..|+ ..+|..++.+|.+
T Consensus 450 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~ 528 (597)
T 2xpi_A 450 QHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRK 528 (597)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHH
Confidence 9999999999999999998863 347889999999999999999999999999876 56777 7899999999999
Q ss_pred cCCccccchhHHHHHHHhcccCCCCCC-hHHHHH---HHHHhCCCCCChhhHHHhhhcCccccchhhHhhhhC
Q 047932 509 NNETSKSSRGKLMSQMSSCWSMCFQPK-TLICSI---SIMLQKDMSPGDTMFSTALLMDPDCSCDLESLIHNT 577 (598)
Q Consensus 509 ~g~~~~A~~~~~~~~~~~~~~~~~~p~-~~~~~~---~~~~~~~~~~a~~~~~~~l~~~P~~~~~~~~l~~~~ 577 (598)
.|++++|.+ +++++.+. .|+ ...|.. .+...|+.++|...++++++++|+++.++..+...+
T Consensus 529 ~g~~~~A~~--~~~~~~~~-----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~ 594 (597)
T 2xpi_A 529 LKMYDAAID--ALNQGLLL-----STNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRAL 594 (597)
T ss_dssp TTCHHHHHH--HHHHHHHH-----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTT
T ss_pred hcCHHHHHH--HHHHHHHh-----CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 999999999 99999866 454 444444 567789999999999999999999999988876544
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.5e-38 Score=329.40 Aligned_cols=466 Identities=12% Similarity=0.034 Sum_probs=390.9
Q ss_pred ccccCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhc-----cHH
Q 047932 48 GDINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINC-----RIM 122 (598)
Q Consensus 48 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~-----~~~ 122 (598)
.+.+.|++++|+.+|++++...| +..++..++..|.+.|++++|+.+|+++... .++..++..+... +++
T Consensus 93 ~~~~~g~~~~A~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~ 167 (597)
T 2xpi_A 93 DALMQQQYKCAAFVGEKVLDITG---NPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQ 167 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHccCchHHHHHHHHHHhhCC---CchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHhhHH
Confidence 35678999999999999997665 5578899999999999999999999998654 5677777766655 999
Q ss_pred HHHHHHHHHHHc---------------CCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHH
Q 047932 123 EAAALFTKLRVF---------------GCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTI 187 (598)
Q Consensus 123 ~a~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 187 (598)
+|+++|+++... +.+.+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+...+..+
T Consensus 168 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------p~~~~~~~~l 240 (597)
T 2xpi_A 168 GALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD-------AKCYEAFDQL 240 (597)
T ss_dssp HHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHH
T ss_pred HHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------chhhHHHHHH
Confidence 999999853221 123357899999999999999999999999999875 4456677777
Q ss_pred HHHHHhcCCHHHHHH--H-HHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhC
Q 047932 188 IDGVCKEGFVDKAME--L-FLQMKDENINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKN 264 (598)
Q Consensus 188 i~~~~~~g~~~~A~~--~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 264 (598)
...+...+..+.+.. + +..+...+..+...+|+.++..|.+.|++++|.++|+++.+. +++..+++.++..|.+.
T Consensus 241 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~ 318 (597)
T 2xpi_A 241 VSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVR 318 (597)
T ss_dssp HHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHT
T ss_pred HHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHh
Confidence 665554433332221 1 444444444445566777788899999999999999998765 57889999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 047932 265 GKMEEASRLLDLMIQIGVHPNTFVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLY 344 (598)
Q Consensus 265 g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 344 (598)
|++++|.++|+++.+.+. .+..++..++.++.+.|++++|..+++.+.+.. +.+..++..++..|.+.|++++|.++|
T Consensus 319 g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 396 (597)
T 2xpi_A 319 SRFIDVLAITTKILEIDP-YNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYF 396 (597)
T ss_dssp TCHHHHHHHHHHHHHHCT-TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHH
Confidence 999999999999998753 377889999999999999999999999998654 567889999999999999999999999
Q ss_pred HHHccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCC
Q 047932 345 RKMLPKGIRPTVVTYSTLFLGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYEL 424 (598)
Q Consensus 345 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 424 (598)
+++.+... .+..+|..++.++.+.|++++|..+|+++.+.+ +.+..++..++.+|.+.|++++|..+|+++.+.. +.
T Consensus 397 ~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~ 473 (597)
T 2xpi_A 397 SKSSTMDP-QFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QY 473 (597)
T ss_dssp HHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CC
T ss_pred HHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC
Confidence 99987543 368899999999999999999999999998875 5578899999999999999999999999998764 45
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 047932 425 DIISYSCLIDGLCKIGKLETAWELFQSLSRV----GLLPN--VVTYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPDCVI 498 (598)
Q Consensus 425 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 498 (598)
+..+|+.++.+|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.++++++.+.+ +.+..+
T Consensus 474 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~ 552 (597)
T 2xpi_A 474 DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANV 552 (597)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHH
T ss_pred ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHH
Confidence 7899999999999999999999999999875 55777 7899999999999999999999999999876 668899
Q ss_pred HHHHHHHHHhcCCccccchhHHHHHHHhcccCCCCCChHHHH
Q 047932 499 FNTIMLGFIRNNETSKSSRGKLMSQMSSCWSMCFQPKTLICS 540 (598)
Q Consensus 499 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~ 540 (598)
|..++.+|.+.|++++|.+ +++++.+. .|+.....
T Consensus 553 ~~~l~~~~~~~g~~~~A~~--~~~~~l~~-----~p~~~~~~ 587 (597)
T 2xpi_A 553 HTAIALVYLHKKIPGLAIT--HLHESLAI-----SPNEIMAS 587 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHH--HHHHHHHH-----CTTCHHHH
T ss_pred HHHHHHHHHHhCCHHHHHH--HHHHHHhc-----CCCChHHH
Confidence 9999999999999999999 99999865 67654433
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=1.2e-28 Score=242.45 Aligned_cols=379 Identities=13% Similarity=0.053 Sum_probs=234.6
Q ss_pred cccCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhccHHHHHHHH
Q 047932 49 DINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCRIMEAAALF 128 (598)
Q Consensus 49 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~a~~~~ 128 (598)
+.+.|++++|.+.|+.+++..|. ++..+..+...+.+.|++++|...++.+++..
T Consensus 9 ~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~----------------------- 63 (388)
T 1w3b_A 9 EYQAGDFEAAERHCMQLWRQEPD--NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN----------------------- 63 (388)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------------
T ss_pred HHHCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----------------------
Confidence 34677888888888888877776 77777777788888888888877777766431
Q ss_pred HHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 047932 129 TKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMK 208 (598)
Q Consensus 129 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 208 (598)
+.+..+|..++..|.+.|++++|+..|+++.+.. |.+..+|..++..+.+.|++++|.+.|+++.
T Consensus 64 --------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 128 (388)
T 1w3b_A 64 --------PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK-------PDFIDGYINLAAALVAAGDMEGAVQAYVSAL 128 (388)
T ss_dssp --------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHH
T ss_pred --------CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3356677888888888888888888888887754 4456677888888888888888888888877
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcCHHH
Q 047932 209 DENINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFV 288 (598)
Q Consensus 209 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 288 (598)
+.+. .+...+..+...+...|++++|.+.|+++.+.. +.+..+|..+...+...|++++|...|+++++.+ +.+...
T Consensus 129 ~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~ 205 (388)
T 1w3b_A 129 QYNP-DLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDA 205 (388)
T ss_dssp HHCT-TCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HhCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHH
Confidence 6532 245566667777777788888888777777652 3345667777777777777777777777776653 224555
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHh
Q 047932 289 YNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFE 368 (598)
Q Consensus 289 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 368 (598)
+..+...+...|++++|...+++..... +.+..++..+...+...|++++|+..|+++...++. +..++..+...+..
T Consensus 206 ~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~ 283 (388)
T 1w3b_A 206 YINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKE 283 (388)
T ss_dssp HHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHH
Confidence 6666666666666666666666665542 234455555555555666666666655555544221 33444444444444
Q ss_pred cCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 047932 369 VHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWEL 448 (598)
Q Consensus 369 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 448 (598)
.|++++|...|+++.+. . +.+..++..++..+...|++++|...
T Consensus 284 ~g~~~~A~~~~~~al~~-----------------------------------~-p~~~~~~~~l~~~~~~~g~~~~A~~~ 327 (388)
T 1w3b_A 284 KGSVAEAEDCYNTALRL-----------------------------------C-PTHADSLNNLANIKREQGNIEEAVRL 327 (388)
T ss_dssp HSCHHHHHHHHHHHHHH-----------------------------------C-TTCHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhh-----------------------------------C-cccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 45555555544444443 2 33444455555555555555555555
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 047932 449 FQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFIRNN 510 (598)
Q Consensus 449 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 510 (598)
++++.+.. +.+..++..++.++.+.|++++|++.|+++++.. +.+...+..+...+...|
T Consensus 328 ~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 328 YRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTC
T ss_pred HHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHhHHHHHHHcc
Confidence 55554431 2234445555555555555555555555555432 233445555555444443
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=2.3e-28 Score=240.46 Aligned_cols=365 Identities=12% Similarity=0.059 Sum_probs=301.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 047932 146 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTYNSLIHC 225 (598)
Q Consensus 146 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 225 (598)
+...+.+.|++++|.+.++.+.+.. |.+...+..+...+...|++++|...++...+.. +.+..+|..+..+
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~ 76 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQE-------PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNV 76 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHH
Confidence 3556777888888888888887764 4556677777778888888888888888777653 3467788888888
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHH
Q 047932 226 FSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTLMDGFCLTGRVNHA 305 (598)
Q Consensus 226 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a 305 (598)
|...|++++|...|+++.+.. +.+..++..++.++.+.|++++|.+.++++.+.. +.+...+..+...+...|++++|
T Consensus 77 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 154 (388)
T 1w3b_A 77 YKERGQLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEA 154 (388)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 888888888888888887753 3345577888888888888888888888888764 22455667777888888888888
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 047932 306 KELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFEVHQVEHALKLFDEMQHN 385 (598)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 385 (598)
.+.|+++.+.. +.+..+|..+...+...|++++|...|+++...++. +...+..+...+...|++++|...+.++...
T Consensus 155 ~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 232 (388)
T 1w3b_A 155 KACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSL 232 (388)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 88888887764 446778888888888999999999999988876433 5778888888899999999999999988876
Q ss_pred CCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 047932 386 DVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYN 465 (598)
Q Consensus 386 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 465 (598)
. +.+..++..++.++...|++++|...|+++.+.. +.+..++..++.++...|++++|...++++.+.. +.+..++.
T Consensus 233 ~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~ 309 (388)
T 1w3b_A 233 S-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLN 309 (388)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred C-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHH
Confidence 4 4568888999999999999999999999999775 4468889999999999999999999999998863 45788999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccccchhHHHHHHHhcc
Q 047932 466 IMIHGLCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFIRNNETSKSSRGKLMSQMSSCW 528 (598)
Q Consensus 466 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 528 (598)
.++..+...|++++|++.++++.+.. +.+..++..++.+|.+.|++++|.+ .++++.+..
T Consensus 310 ~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~--~~~~a~~~~ 369 (388)
T 1w3b_A 310 NLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALM--HYKEAIRIS 369 (388)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHH--HHHHHHTTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHH--HHHHHHhhC
Confidence 99999999999999999999999864 6678899999999999999999999 999999883
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=3.1e-28 Score=242.87 Aligned_cols=185 Identities=15% Similarity=0.183 Sum_probs=109.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHhcC---------CHHHHHHHHHHHhhCCCCcCHHHH
Q 047932 324 YTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFEVH---------QVEHALKLFDEMQHNDVAADTYIY 394 (598)
Q Consensus 324 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---------~~~~a~~~~~~~~~~~~~~~~~~~ 394 (598)
++.+|.+|++.|++++|+++|++|...|+.||..+|+.+|.+|++.+ ..+.|.++|++|...|+.||..+|
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ty 108 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATF 108 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHH
Confidence 44444444444555555555555444444445555555544444332 245566666666666666666666
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 047932 395 NTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCND 474 (598)
Q Consensus 395 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 474 (598)
+.+|.+|++.|++++|..+|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.|+.+|++.
T Consensus 109 n~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~ 188 (501)
T 4g26_A 109 TNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDT 188 (501)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhC
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 047932 475 GQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFIR 508 (598)
Q Consensus 475 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 508 (598)
|++++|.+++++|.+.|+.|+..||+.++..|..
T Consensus 189 g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 189 KNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp TCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 6666666666666666666666666666655543
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=6.4e-28 Score=240.60 Aligned_cols=203 Identities=14% Similarity=0.194 Sum_probs=180.1
Q ss_pred HHHHHHHHcCCCCC-HhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCC--------
Q 047932 126 ALFTKLRVFGCEPD-VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGF-------- 196 (598)
Q Consensus 126 ~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-------- 196 (598)
.+.+++.+.+.... ...++.+|..|++.|++++|+++|++|.+.| ++||..+|++||.+|++.+.
T Consensus 11 ~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~G------v~pd~~tyn~Li~~c~~~~~~~~~~~~~ 84 (501)
T 4g26_A 11 NLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNG------VQLSQYHYNVLLYVCSLAEAATESSPNP 84 (501)
T ss_dssp -------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHT------CCCCHHHHHHHHHHHTTCCCCSSSSCCH
T ss_pred HHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC------CCCCHhHHHHHHHHHHhCCchhhhhhcc
Confidence 34444544444333 3457889999999999999999999999998 89999999999999997665
Q ss_pred -HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHH
Q 047932 197 -VDKAMELFLQMKDENINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLD 275 (598)
Q Consensus 197 -~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 275 (598)
+++|.++|++|...|+.||..+|++||.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|+
T Consensus 85 ~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~ 164 (501)
T 4g26_A 85 GLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDA 164 (501)
T ss_dssp HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHH
Confidence 6889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc
Q 047932 276 LMIQIGVHPNTFVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKT 334 (598)
Q Consensus 276 ~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 334 (598)
+|.+.|+.||..+|+.|+.+|++.|+.++|.++|++|.+.+..|+..||+.++..|+..
T Consensus 165 ~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 165 HMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999988763
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.95 E-value=6.6e-26 Score=231.92 Aligned_cols=448 Identities=12% Similarity=0.005 Sum_probs=308.0
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhccHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcC
Q 047932 75 VSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTG 154 (598)
Q Consensus 75 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 154 (598)
+..+...+..+.+.|++++|+..|+++++. .|+..++..++.+|.+.|
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------------------------------~p~~~~~~~la~~~~~~g 53 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALEL--------------------------------KEDPVFYSNLSACYVSVG 53 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--------------------------------CCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhc--------------------------------CccHHHHHhHHHHHHHHh
Confidence 456667777777888888888888777753 246667777888888888
Q ss_pred ChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 047932 155 HTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTYNSLIHCFSHADDWNE 234 (598)
Q Consensus 155 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 234 (598)
++++|+..|+++.+.+ |.+..+|..++.++.+.|++++|...|+.+...+. ++......++..+........
T Consensus 54 ~~~~A~~~~~~al~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 125 (514)
T 2gw1_A 54 DLKKVVEMSTKALELK-------PDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSK 125 (514)
T ss_dssp CHHHHHHHHHHHHHHC-------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhccC-------hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHH
Confidence 8888888888887765 45667788888888888888888888888877642 344444444444443333333
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCC---------CcCHHHHHHHHHHHHh---cCCH
Q 047932 235 AKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGV---------HPNTFVYNTLMDGFCL---TGRV 302 (598)
Q Consensus 235 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---------~~~~~~~~~ll~~~~~---~g~~ 302 (598)
+.+.+..+...+..|+...+..................+...+..... +.+...+......+.. .|++
T Consensus 126 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (514)
T 2gw1_A 126 LKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESY 205 (514)
T ss_dssp HTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHH
T ss_pred HHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccH
Confidence 333332222211111111111100000111111111111111111110 1224455555555554 7899
Q ss_pred HHHHHHHHHHHH-----CCC--------CCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHhc
Q 047932 303 NHAKELFVSMES-----NGC--------MHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFEV 369 (598)
Q Consensus 303 ~~a~~~~~~~~~-----~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 369 (598)
++|...|+++.+ ... +.+...+..+...+...|++++|...++++...+.. ...+..+...+...
T Consensus 206 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~ 283 (514)
T 2gw1_A 206 DKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADR 283 (514)
T ss_dssp HHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHC
Confidence 999999998887 310 224566778888899999999999999998876443 77888888899999
Q ss_pred CCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 047932 370 HQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELF 449 (598)
Q Consensus 370 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 449 (598)
|++++|...++++.... +.+...+..+...+...|++++|...++++.+.. +.+..++..++..+...|++++|...+
T Consensus 284 ~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 361 (514)
T 2gw1_A 284 NDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLF 361 (514)
T ss_dssp SCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999988764 4567788889999999999999999999998765 346778888999999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHh---cCCccccchhHHH
Q 047932 450 QSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEAKGV-EPD----CVIFNTIMLGFIR---NNETSKSSRGKLM 521 (598)
Q Consensus 450 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~---~g~~~~A~~~~~~ 521 (598)
+++.+.. +.+...+..++..+...|++++|...++++.+..- .++ ...+..++.++.. .|++++|.+ .+
T Consensus 362 ~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~--~~ 438 (514)
T 2gw1_A 362 SEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATN--LL 438 (514)
T ss_dssp HHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHH--HH
T ss_pred HHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHH--HH
Confidence 9988753 23567788889999999999999999999876420 111 3488888999999 999999999 99
Q ss_pred HHHHhcccCCCCCChHHHH-H---HHHHhCCCCCChhhHHHhhhcCccccchhhHhh
Q 047932 522 SQMSSCWSMCFQPKTLICS-I---SIMLQKDMSPGDTMFSTALLMDPDCSCDLESLI 574 (598)
Q Consensus 522 ~~~~~~~~~~~~p~~~~~~-~---~~~~~~~~~~a~~~~~~~l~~~P~~~~~~~~l~ 574 (598)
+++.+. .|+..... . ++...|+.++|...++++++++|+++..+..+.
T Consensus 439 ~~a~~~-----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 490 (514)
T 2gw1_A 439 EKASKL-----DPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAIT 490 (514)
T ss_dssp HHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHHH
T ss_pred HHHHHh-----CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 999865 45543332 2 566789999999999999999999998876663
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=6.7e-25 Score=224.44 Aligned_cols=440 Identities=9% Similarity=-0.024 Sum_probs=294.6
Q ss_pred CcccccCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhccHHHHH
Q 047932 46 GQGDINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCRIMEAA 125 (598)
Q Consensus 46 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~a~ 125 (598)
|..+.+.|++++|+..|++++..+| ++.+|..++.++.+.|++++|+..|+++++..
T Consensus 13 g~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------------------- 69 (514)
T 2gw1_A 13 GNQFFRNKKYDDAIKYYNWALELKE---DPVFYSNLSACYVSVGDLKKVVEMSTKALELK-------------------- 69 (514)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------------------
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCc---cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC--------------------
Confidence 4445689999999999999999875 68899999999999999999999999988642
Q ss_pred HHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHH
Q 047932 126 ALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFL 205 (598)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 205 (598)
+.+..++..++.+|.+.|++++|...|+++...+ +++......++..+........+.+.+.
T Consensus 70 -----------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 131 (514)
T 2gw1_A 70 -----------PDYSKVLLRRASANEGLGKFADAMFDLSVLSLNG-------DFNDASIEPMLERNLNKQAMSKLKEKFG 131 (514)
T ss_dssp -----------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS-------SCCGGGTHHHHHHHHHHHHHHHHTTC--
T ss_pred -----------hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-------CCccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 2356788899999999999999999999999876 4455555555555554444444444333
Q ss_pred HHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---------CCCHhhHHHHHHHHHh---CCCHHHHHHH
Q 047932 206 QMKDENINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGV---------HPNVVTFSVIVDELCK---NGKMEEASRL 273 (598)
Q Consensus 206 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---------~~~~~~~~~l~~~~~~---~g~~~~a~~~ 273 (598)
.+...+..|+...+..-...............+...+..... +.+...+......+.. .|++++|...
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 211 (514)
T 2gw1_A 132 DIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADES 211 (514)
T ss_dssp -------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHH
T ss_pred HHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHH
Confidence 322221111111111100000000000001111111111000 1123344444444443 7788888888
Q ss_pred HHHHHh-----cCC--------CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHH
Q 047932 274 LDLMIQ-----IGV--------HPNTFVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEA 340 (598)
Q Consensus 274 ~~~~~~-----~~~--------~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 340 (598)
++++.+ ... +.+..++..+...+...|++++|...++.+.+... +...+..+...+...|++++|
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~--~~~~~~~l~~~~~~~~~~~~A 289 (514)
T 2gw1_A 212 FTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFP--RVNSYIYMALIMADRNDSTEY 289 (514)
T ss_dssp HHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHTSSCCTTG
T ss_pred HHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCc--cHHHHHHHHHHHHHCCCHHHH
Confidence 888776 311 12345667777778888888888888888777642 277777788888888888888
Q ss_pred HHHHHHHccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhC
Q 047932 341 LNLYRKMLPKGIRPTVVTYSTLFLGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNS 420 (598)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 420 (598)
...++++...... +...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.
T Consensus 290 ~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 367 (514)
T 2gw1_A 290 YNYFDKALKLDSN-NSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRK 367 (514)
T ss_dssp GGHHHHHHTTCTT-CTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCcC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 8888887776432 55677777888888888888888888887764 445667777888888888888888888887765
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCC
Q 047932 421 KYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLL-PN----VVTYNIMIHGLCN---DGQMDKAHDLFLDMEAKGV 492 (598)
Q Consensus 421 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~ 492 (598)
. +.+..++..++..+...|++++|...++++.+.... ++ ...+..++.++.. .|++++|...++++.+..
T Consensus 368 ~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~- 445 (514)
T 2gw1_A 368 F-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD- 445 (514)
T ss_dssp S-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-
T ss_pred c-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-
Confidence 3 335677788888888888888888888887663211 11 2367778888888 888888888888888754
Q ss_pred CCCHHHHHHHHHHHHhcCCccccchhHHHHHHHhcccCCCCCChHHH
Q 047932 493 EPDCVIFNTIMLGFIRNNETSKSSRGKLMSQMSSCWSMCFQPKTLIC 539 (598)
Q Consensus 493 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~ 539 (598)
+.+..++..+..+|.+.|++++|.. .++++.+. .|+....
T Consensus 446 ~~~~~~~~~la~~~~~~g~~~~A~~--~~~~a~~~-----~~~~~~~ 485 (514)
T 2gw1_A 446 PRSEQAKIGLAQMKLQQEDIDEAIT--LFEESADL-----ARTMEEK 485 (514)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHH--HHHHHHHH-----CSSHHHH
T ss_pred cccHHHHHHHHHHHHHhcCHHHHHH--HHHHHHHh-----ccccHHH
Confidence 5567778888888888888888888 88888855 5665443
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.94 E-value=6.1e-23 Score=206.10 Aligned_cols=365 Identities=11% Similarity=0.043 Sum_probs=285.9
Q ss_pred CCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH
Q 047932 137 EPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNV 216 (598)
Q Consensus 137 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 216 (598)
+.+...+..++..|.+.|++++|+.+|+++.... +.+..+|..++.++...|++++|...|+++.+.+. .+.
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~ 94 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-------PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKM-DFT 94 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CcH
Confidence 3467788999999999999999999999999875 56789999999999999999999999999988643 368
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---hhHHHH------------HHHHHhCCCHHHHHHHHHHHHhcC
Q 047932 217 VTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNV---VTFSVI------------VDELCKNGKMEEASRLLDLMIQIG 281 (598)
Q Consensus 217 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l------------~~~~~~~g~~~~a~~~~~~~~~~~ 281 (598)
.++..+..+|...|++++|.+.|+++.+.. +.+. ..+..+ ...+...|++++|...++.+.+..
T Consensus 95 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 173 (450)
T 2y4t_A 95 AARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC 173 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 899999999999999999999999998763 2233 444444 445889999999999999998864
Q ss_pred CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHH
Q 047932 282 VHPNTFVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYST 361 (598)
Q Consensus 282 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 361 (598)
+.+..++..++.+|...|++++|...|+.+.+.. +.+..++..++..|...|++++|+..|+++...... +...+..
T Consensus 174 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~ 250 (450)
T 2y4t_A 174 -VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAH 250 (450)
T ss_dssp -TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred -CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-hHHHHHH
Confidence 3477888999999999999999999999988764 457888999999999999999999999999875332 4444444
Q ss_pred H------------HHHHHhcCCHHHHHHHHHHHhhCCCCcC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCC
Q 047932 362 L------------FLGLFEVHQVEHALKLFDEMQHNDVAAD----TYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELD 425 (598)
Q Consensus 362 l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 425 (598)
+ +..+...|++++|...|+++.+.. +.+ ...+..++.++.+.|++++|+..++++.... +.+
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~ 328 (450)
T 2y4t_A 251 YKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE-PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDN 328 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTC
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-ccc
Confidence 4 778888999999999999988753 222 3467788888999999999999999988654 447
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHH------------HHhcC-----CHHHHHHHHHHH
Q 047932 426 IISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPN-VVTYNIMIHG------------LCNDG-----QMDKAHDLFLDM 487 (598)
Q Consensus 426 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~------------~~~~g-----~~~~A~~~~~~~ 487 (598)
..+|..++.+|...|++++|...++++.+. .|+ ...+..+..+ |...| +.+++.+.|+++
T Consensus 329 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~ 406 (450)
T 2y4t_A 329 VNALKDRAEAYLIEEMYDEAIQDYETAQEH--NENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKL 406 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--SSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHH
Confidence 888999999999999999999999999884 343 5555555532 33334 566778888763
Q ss_pred -HHCC--CCCC-------HHHHHHHHHHHHhcCCccccch
Q 047932 488 -EAKG--VEPD-------CVIFNTIMLGFIRNNETSKSSR 517 (598)
Q Consensus 488 -~~~~--~~p~-------~~~~~~l~~~~~~~g~~~~A~~ 517 (598)
.+.. ..|+ ...|..+..+|...|+.+++.+
T Consensus 407 ~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~~ 446 (450)
T 2y4t_A 407 ALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKK 446 (450)
T ss_dssp HHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC--
T ss_pred HHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHHh
Confidence 3321 1122 2367777788888888776544
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.94 E-value=4.4e-23 Score=207.16 Aligned_cols=349 Identities=11% Similarity=0.042 Sum_probs=263.8
Q ss_pred HHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhccHHHHHHHHHHHHHcC
Q 047932 56 NEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCRIMEAAALFTKLRVFG 135 (598)
Q Consensus 56 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~a~~~~~~~~~~~ 135 (598)
..+...|..++..+|. ++..|..++..+.+.|++++|+.+|+++++..
T Consensus 9 ~~~~~~~~~~~~~~p~--~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~------------------------------ 56 (450)
T 2y4t_A 9 SGVDLGTENLYFQSMA--DVEKHLELGKKLLAAGQLADALSQFHAAVDGD------------------------------ 56 (450)
T ss_dssp --------------CH--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------------------
T ss_pred ccccccccccccccHH--HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------------------------------
Confidence 4556666777776765 88899999999999999999999999887531
Q ss_pred CCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC
Q 047932 136 CEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPN 215 (598)
Q Consensus 136 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 215 (598)
+.+..++..++.+|...|++++|+..|+++.+.+ +.+..++..++..|.+.|++++|.+.|+++...... +
T Consensus 57 -p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~ 127 (450)
T 2y4t_A 57 -PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-------MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS-E 127 (450)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCC-H
T ss_pred -CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-C
Confidence 2356778888888888888889988888888865 456788888888888888999998888888875322 3
Q ss_pred H---HHHHHH------------HHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhc
Q 047932 216 V---VTYNSL------------IHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQI 280 (598)
Q Consensus 216 ~---~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 280 (598)
. ..+..+ ...+...|++++|...|+++.+.. +.+..++..++.+|...|++++|...++.+.+.
T Consensus 128 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 206 (450)
T 2y4t_A 128 NEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKL 206 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 3 455444 444888899999999999988763 446778888899999999999999999998876
Q ss_pred CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHH------------HHHHHhcCCHHHHHHHHHHHc
Q 047932 281 GVHPNTFVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTL------------INGYCKTKNVEEALNLYRKML 348 (598)
Q Consensus 281 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l------------~~~~~~~~~~~~A~~~~~~~~ 348 (598)
. +.+..++..+..++...|++++|...|+.+.... +.+...+..+ +..+...|++++|...|+++.
T Consensus 207 ~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l 284 (450)
T 2y4t_A 207 K-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVM 284 (450)
T ss_dssp H-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4 3467888889999999999999999999988763 3344445444 788889999999999999988
Q ss_pred cCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCC
Q 047932 349 PKGIRPT----VVTYSTLFLGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYEL 424 (598)
Q Consensus 349 ~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 424 (598)
..... + ...+..+...+.+.|++++|...++++.+.. +.+...+..++.+|...|++++|...|+++.+.. +-
T Consensus 285 ~~~p~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~ 361 (450)
T 2y4t_A 285 KTEPS-IAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHN-EN 361 (450)
T ss_dssp HHCCS-SHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SS
T ss_pred hcCCc-chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cc
Confidence 75322 2 3467888889999999999999999988763 5578889999999999999999999999998764 33
Q ss_pred CHHHHHHHHHH------------HHHcC-----CHHHHHHHHHH
Q 047932 425 DIISYSCLIDG------------LCKIG-----KLETAWELFQS 451 (598)
Q Consensus 425 ~~~~~~~l~~~------------~~~~g-----~~~~A~~~~~~ 451 (598)
+...+..+..+ |...| +.+++.+.+++
T Consensus 362 ~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~ 405 (450)
T 2y4t_A 362 DQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRK 405 (450)
T ss_dssp CHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHH
Confidence 56666666633 33334 55667777776
No 11
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.93 E-value=1.1e-22 Score=209.34 Aligned_cols=402 Identities=11% Similarity=0.035 Sum_probs=257.3
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhccHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhc
Q 047932 74 PVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRT 153 (598)
Q Consensus 74 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 153 (598)
.+..|..++..+.+.|++++|+..|++++... |+ +..++..++.+|.+.
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~-----------------------------~~~~~~~la~~~~~~ 72 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELD--PN-----------------------------EPVFYSNISACYIST 72 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC--TT-----------------------------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC--CC-----------------------------CcHHHHHHHHHHHHc
Confidence 45678888899999999999999999988652 32 344455555555555
Q ss_pred CChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHH
Q 047932 154 GHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTYNSLIHCFSHADDWN 233 (598)
Q Consensus 154 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 233 (598)
|++++|++.|+++.+.+ +.+..++..+...+...|++++|...|+.+ .. .|+ .....+..+...+...
T Consensus 73 g~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~-~~--~~~--~~~~~~~~~~~~~~~~ 140 (537)
T 3fp2_A 73 GDLEKVIEFTTKALEIK-------PDHSKALLRRASANESLGNFTDAMFDLSVL-SL--NGD--FDGASIEPMLERNLNK 140 (537)
T ss_dssp TCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH-C---------------CHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcC-------CchHHHHHHHHHHHHHcCCHHHHHHHHHHH-hc--CCC--CChHHHHHHHHHHHHH
Confidence 55555555555555543 334555555555555555555555555422 11 111 1111122223333334
Q ss_pred HHHHHHHHHHHCC-----------------------------------CCCCHh-hHHHHHHHHH--------hCCCHHH
Q 047932 234 EAKRLFIKMMDQG-----------------------------------VHPNVV-TFSVIVDELC--------KNGKMEE 269 (598)
Q Consensus 234 ~a~~~~~~~~~~~-----------------------------------~~~~~~-~~~~l~~~~~--------~~g~~~~ 269 (598)
.|...++.+.... ..+... ....+...+. ..|++++
T Consensus 141 ~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~ 220 (537)
T 3fp2_A 141 QAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTK 220 (537)
T ss_dssp HHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 4444444443210 011111 1112222211 1246778
Q ss_pred HHHHHHHHHhcCCCcC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 047932 270 ASRLLDLMIQIGVHPN-------TFVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALN 342 (598)
Q Consensus 270 a~~~~~~~~~~~~~~~-------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 342 (598)
|..+++.+.+.... + ..++..+...+...|++++|...++.+.... |+...+..+...+...|++++|..
T Consensus 221 A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~ 297 (537)
T 3fp2_A 221 STDMYHSLLSANTV-DDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFK 297 (537)
T ss_dssp HHHHHHHHHC--CC-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHH
T ss_pred HHHHHHHHHHHCCC-cchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHH
Confidence 88888888765322 2 2245566677778888888888888887763 446777778888888888888888
Q ss_pred HHHHHccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCC
Q 047932 343 LYRKMLPKGIRPTVVTYSTLFLGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKY 422 (598)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 422 (598)
.++++...... +..++..+...+...|++++|...++++.+.. +.+...+..+..++...|++++|...++++.+..
T Consensus 298 ~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~- 374 (537)
T 3fp2_A 298 FFQKAVDLNPE-YPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF- 374 (537)
T ss_dssp HHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHhccCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 88888766432 56778888888888888888888888887754 3456677788888888888888888888887654
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-----CCCHHHHHHHHHHHHhc----------CCHHHHHHHHHHH
Q 047932 423 ELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGL-----LPNVVTYNIMIHGLCND----------GQMDKAHDLFLDM 487 (598)
Q Consensus 423 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~p~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~ 487 (598)
+.+..++..+..++...|++++|...++++.+... ......+..+..++... |++++|+..|+++
T Consensus 375 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 454 (537)
T 3fp2_A 375 PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKA 454 (537)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHH
Confidence 44567788888888888888888888888765321 11122234445666666 8888888888888
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCccccchhHHHHHHHhc
Q 047932 488 EAKGVEPDCVIFNTIMLGFIRNNETSKSSRGKLMSQMSSC 527 (598)
Q Consensus 488 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 527 (598)
.+.. +.+...+..+..+|.+.|++++|.+ .++++.+.
T Consensus 455 ~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~--~~~~al~~ 491 (537)
T 3fp2_A 455 CELD-PRSEQAKIGLAQLKLQMEKIDEAIE--LFEDSAIL 491 (537)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCHHHHHH--HHHHHHHH
T ss_pred HHhC-CCCHHHHHHHHHHHHHhccHHHHHH--HHHHHHHh
Confidence 8764 5567788888888888888888888 88888855
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.93 E-value=3.7e-23 Score=212.79 Aligned_cols=408 Identities=12% Similarity=0.067 Sum_probs=313.6
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHH
Q 047932 140 VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTY 219 (598)
Q Consensus 140 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 219 (598)
...+..++..+.+.|++++|+..|+++...+ +.+..+|..+..+|.+.|++++|++.|+++.+.+. .+..++
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~ 96 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-------PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKP-DHSKAL 96 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-------CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-chHHHH
Confidence 4567889999999999999999999999976 66789999999999999999999999999998643 378899
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcC------CCcCHH------
Q 047932 220 NSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIG------VHPNTF------ 287 (598)
Q Consensus 220 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------~~~~~~------ 287 (598)
..+..++...|++++|...|+. ... .|+.. ...+..+...+...++...++.+.... ..|+..
T Consensus 97 ~~la~~~~~~g~~~~A~~~~~~-~~~--~~~~~--~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 171 (537)
T 3fp2_A 97 LRRASANESLGNFTDAMFDLSV-LSL--NGDFD--GASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFF 171 (537)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHH-HC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHH-Hhc--CCCCC--hHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHH
Confidence 9999999999999999999963 332 22221 122334445555677888888775531 111111
Q ss_pred ------------------------HHHHHHHHHH--------hcCCHHHHHHHHHHHHHCCCCCCh-------hhHHHHH
Q 047932 288 ------------------------VYNTLMDGFC--------LTGRVNHAKELFVSMESNGCMHDV-------VSYTTLI 328 (598)
Q Consensus 288 ------------------------~~~~ll~~~~--------~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~ 328 (598)
....+...+. ..|++++|..+++.+.+.. +.+. .++..+.
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~g 250 (537)
T 3fp2_A 172 GIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN-TVDDPLRENAALALCYTG 250 (537)
T ss_dssp HTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHH
T ss_pred HhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-CCcchhhHHHHHHHHHHH
Confidence 1222222221 1247899999999998764 2232 3466777
Q ss_pred HHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHH
Q 047932 329 NGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVL 408 (598)
Q Consensus 329 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 408 (598)
..+...|++++|...++++.... |+...+..+...+...|++++|...+.++.+.. +.+..++..+...+...|+++
T Consensus 251 ~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 327 (537)
T 3fp2_A 251 IFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYK 327 (537)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHH
Confidence 88889999999999999998864 557888889999999999999999999998864 557888999999999999999
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047932 409 EALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDME 488 (598)
Q Consensus 409 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 488 (598)
+|...|+++.+.. +.+...+..+..++...|++++|...++++.+.. +.+...+..+...+...|++++|+..|+++.
T Consensus 328 ~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 405 (537)
T 3fp2_A 328 NAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAK 405 (537)
T ss_dssp HHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 9999999998765 3467889999999999999999999999998863 3356788899999999999999999999987
Q ss_pred HCC-----CCCCHHHHHHHHHHHHhc----------CCccccchhHHHHHHHhcccCCCCCChHH-HHH---HHHHhCCC
Q 047932 489 AKG-----VEPDCVIFNTIMLGFIRN----------NETSKSSRGKLMSQMSSCWSMCFQPKTLI-CSI---SIMLQKDM 549 (598)
Q Consensus 489 ~~~-----~~p~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~~p~~~~-~~~---~~~~~~~~ 549 (598)
+.. .......+.....++... |++++|.. .++++.+. .|+... +.. ++...|+.
T Consensus 406 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~--~~~~a~~~-----~p~~~~~~~~l~~~~~~~g~~ 478 (537)
T 3fp2_A 406 RLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIK--LLTKACEL-----DPRSEQAKIGLAQLKLQMEKI 478 (537)
T ss_dssp HHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHH--HHHHHHHH-----CTTCHHHHHHHHHHHHHTTCH
T ss_pred HcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHH--HHHHHHHh-----CCCCHHHHHHHHHHHHHhccH
Confidence 642 111223355556778888 99999999 99999965 455433 222 66778999
Q ss_pred CCChhhHHHhhhcCccccchhhHh
Q 047932 550 SPGDTMFSTALLMDPDCSCDLESL 573 (598)
Q Consensus 550 ~~a~~~~~~~l~~~P~~~~~~~~l 573 (598)
++|...++++++++|++.......
T Consensus 479 ~~A~~~~~~al~~~~~~~~~~~~~ 502 (537)
T 3fp2_A 479 DEAIELFEDSAILARTMDEKLQAT 502 (537)
T ss_dssp HHHHHHHHHHHHHC--CHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHH
Confidence 999999999999999998876544
No 13
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.90 E-value=4.9e-19 Score=179.21 Aligned_cols=401 Identities=11% Similarity=0.026 Sum_probs=320.1
Q ss_pred HHHHHHHHcCCCCCHhhHHHHHHHHHh----cCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHh----cCCH
Q 047932 126 ALFTKLRVFGCEPDVFTYNTLINGLCR----TGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCK----EGFV 197 (598)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~ 197 (598)
..+....+. .+..++..+...|.. .+++++|+..|++..+.+ +...+..|...|.. .+++
T Consensus 28 ~~~~~~a~~---g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---------~~~a~~~Lg~~y~~g~g~~~~~ 95 (490)
T 2xm6_A 28 EQLKQKAES---GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---------YTPAEYVLGLRYMNGEGVPQDY 95 (490)
T ss_dssp HHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---------CHHHHHHHHHHHHHTSSSCCCH
T ss_pred HHHHHHHHC---CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---------CHHHHHHHHHHHHcCCCCCCCH
Confidence 344444443 367788888888888 899999999999988754 46788888888888 8999
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh----CCCHHH
Q 047932 198 DKAMELFLQMKDENINPNVVTYNSLIHCFSH----ADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCK----NGKMEE 269 (598)
Q Consensus 198 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~ 269 (598)
++|.+.|++..+.| +...+..|...|.. .+++++|...|++..+.| +...+..+...|.. .+++++
T Consensus 96 ~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~ 169 (490)
T 2xm6_A 96 AQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVM 169 (490)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred HHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHH
Confidence 99999999998864 67788888888888 889999999999998875 56677788888887 789999
Q ss_pred HHHHHHHHHhcCCCcCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh----cCCHHHHH
Q 047932 270 ASRLLDLMIQIGVHPNTFVYNTLMDGFCL----TGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCK----TKNVEEAL 341 (598)
Q Consensus 270 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~ 341 (598)
|.+.|++..+.| +...+..+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|.
T Consensus 170 A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~ 243 (490)
T 2xm6_A 170 AREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSR 243 (490)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 999999998875 67788888888887 889999999999998875 66778888888876 78999999
Q ss_pred HHHHHHccCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHc-----CCHHHHHH
Q 047932 342 NLYRKMLPKGIRPTVVTYSTLFLGLFE----VHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKN-----GFVLEALE 412 (598)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g~~~~A~~ 412 (598)
.+|++..+.+ +...+..+...+.. .++.++|..+|++..+.+ +...+..+...+... +++++|..
T Consensus 244 ~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~ 317 (490)
T 2xm6_A 244 VLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAIS 317 (490)
T ss_dssp HHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHH
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHH
Confidence 9999988764 55667777777777 899999999999998764 556777788888887 89999999
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHH
Q 047932 413 LFCAIGNSKYELDIISYSCLIDGLCKIG---KLETAWELFQSLSRVGLLPNVVTYNIMIHGLCN----DGQMDKAHDLFL 485 (598)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~ 485 (598)
+|++..+.+ +...+..+...|...| ++++|++.|++..+.| +...+..+...|.. .+++++|...|+
T Consensus 318 ~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~ 391 (490)
T 2xm6_A 318 WYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMR 391 (490)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 999998865 5677888888888766 7899999999998863 67788889998888 899999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHh----cCCccccchhHHHHHHHhcccCCCC-CChHHHHH-HH-HHhCCCCCChhhHHH
Q 047932 486 DMEAKGVEPDCVIFNTIMLGFIR----NNETSKSSRGKLMSQMSSCWSMCFQ-PKTLICSI-SI-MLQKDMSPGDTMFST 558 (598)
Q Consensus 486 ~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~-p~~~~~~~-~~-~~~~~~~~a~~~~~~ 558 (598)
+..+.+ +...+..+..+|.. .++.++|.. +++++.+. +.. |+...... +- ....+.+.+..+.++
T Consensus 392 ~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~--~~~~A~~~---~~~~~~~~~a~~~l~~~~~~~~~~a~~~a~~ 463 (490)
T 2xm6_A 392 KAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWA--WFDTASTN---DMNLFGTENRNITEKKLTAKQLQQAELLSQQ 463 (490)
T ss_dssp HHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHH--HHHHHHHH---HCCHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHH--HHHHHHHC---CCCCcCCHHHHHHHHhcCHhHHHHHHHHHHH
Confidence 999876 67788889888988 899999999 99999876 322 22222211 11 111234555666777
Q ss_pred hhhcCccccchh
Q 047932 559 ALLMDPDCSCDL 570 (598)
Q Consensus 559 ~l~~~P~~~~~~ 570 (598)
.++..|+++..-
T Consensus 464 ~~~~~~~~~~~~ 475 (490)
T 2xm6_A 464 YIEKYAPEAWAR 475 (490)
T ss_dssp HHHHHCHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777777766653
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.90 E-value=9.5e-20 Score=176.72 Aligned_cols=321 Identities=12% Similarity=0.030 Sum_probs=253.6
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 047932 180 DTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVD 259 (598)
Q Consensus 180 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 259 (598)
++..+..+...+...|++++|...|+++.+... .+..++..+..++...|++++|...++++.+.. +.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 356788889999999999999999999988643 378899999999999999999999999998863 336678889999
Q ss_pred HHHhCCCHHHHHHHHHHHHhcCCC--cCHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHH
Q 047932 260 ELCKNGKMEEASRLLDLMIQIGVH--PNTFVYNTL------------MDGFCLTGRVNHAKELFVSMESNGCMHDVVSYT 325 (598)
Q Consensus 260 ~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~l------------l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 325 (598)
++...|++++|...++.+.+.... .+...+..+ ...+...|++++|...++.+.+.. +.+...+.
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 158 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRE 158 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHH
Confidence 999999999999999999886420 244444444 577888999999999999988764 45778888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHH----------
Q 047932 326 TLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFEVHQVEHALKLFDEMQHNDVAADTYIYN---------- 395 (598)
Q Consensus 326 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---------- 395 (598)
.+...+...|++++|...++++....+ .+..++..+...+...|++++|...++++.+.. +.+...+.
T Consensus 159 ~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~ 236 (359)
T 3ieg_A 159 LRAECFIKEGEPRKAISDLKAASKLKS-DNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNK 236 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCS-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHHH
Confidence 889999999999999999999887643 367888888889999999999999999888753 33333332
Q ss_pred --HHHHHHHHcCCHHHHHHHHHHHhhCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 047932 396 --TFIDGLCKNGFVLEALELFCAIGNSKYELDI----ISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIH 469 (598)
Q Consensus 396 --~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 469 (598)
.+...+.+.|++++|...++++.+.... +. ..+..+..++...|++++|...++++.+.. +.+..++..+..
T Consensus 237 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 314 (359)
T 3ieg_A 237 LIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKDRAE 314 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence 2356688889999999999888865422 33 235567788888999999999999888752 336778888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 047932 470 GLCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFIR 508 (598)
Q Consensus 470 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 508 (598)
++...|++++|...|+++.+.. +.+...+..+..+...
T Consensus 315 ~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 315 AYLIEEMYDEAIQDYEAAQEHN-ENDQQIREGLEKAQRL 352 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHH
Confidence 8889999999999999988764 4456666666665543
No 15
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.89 E-value=1.4e-19 Score=175.45 Aligned_cols=319 Identities=11% Similarity=0.053 Sum_probs=264.7
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHH
Q 047932 139 DVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVT 218 (598)
Q Consensus 139 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 218 (598)
++..+..++..+...|++++|+..|+++.+.. +.+..++..+...+...|++++|...++++.+.. +.+...
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 73 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-------PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAA 73 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-------cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchH
Confidence 45678889999999999999999999999875 5678899999999999999999999999998863 336788
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHhhHHHH------------HHHHHhCCCHHHHHHHHHHHHhcCCCc
Q 047932 219 YNSLIHCFSHADDWNEAKRLFIKMMDQGVH--PNVVTFSVI------------VDELCKNGKMEEASRLLDLMIQIGVHP 284 (598)
Q Consensus 219 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l------------~~~~~~~g~~~~a~~~~~~~~~~~~~~ 284 (598)
+..+..++...|++++|...|+++.+.... .+...+..+ ...+...|++++|...++.+.+.. +.
T Consensus 74 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~ 152 (359)
T 3ieg_A 74 RLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VW 152 (359)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CC
Confidence 999999999999999999999999876320 244445444 578899999999999999998875 44
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHH----
Q 047932 285 NTFVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYS---- 360 (598)
Q Consensus 285 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~---- 360 (598)
+...+..+..++...|++++|...++.+.+.. +.+...+..+...+...|++++|...++++...... +...+.
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~ 230 (359)
T 3ieg_A 153 DAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQ 230 (359)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHHHH
Confidence 77889999999999999999999999999874 567889999999999999999999999999876432 333332
Q ss_pred --------HHHHHHHhcCCHHHHHHHHHHHhhCCCCcCH----HHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHH
Q 047932 361 --------TLFLGLFEVHQVEHALKLFDEMQHNDVAADT----YIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIIS 428 (598)
Q Consensus 361 --------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 428 (598)
.+...+...|++++|...++++.+.. +.+. ..+..+..++...|++++|...++++.+.. +.+..+
T Consensus 231 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 308 (359)
T 3ieg_A 231 VKKLNKLIESAEELIRDGRYTDATSKYESVMKTE-PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNA 308 (359)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHH
Confidence 23667889999999999999998864 2233 335567889999999999999999998764 447889
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHH
Q 047932 429 YSCLIDGLCKIGKLETAWELFQSLSRVGLLPN-VVTYNIMIHGLC 472 (598)
Q Consensus 429 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~ 472 (598)
+..+..++...|++++|...|+++.+. .|+ ...+..+..+..
T Consensus 309 ~~~~~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~ 351 (359)
T 3ieg_A 309 LKDRAEAYLIEEMYDEAIQDYEAAQEH--NENDQQIREGLEKAQR 351 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChHHHHHHHHHHH
Confidence 999999999999999999999999985 444 555555555443
No 16
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.89 E-value=4.5e-18 Score=172.13 Aligned_cols=364 Identities=13% Similarity=0.039 Sum_probs=291.5
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCCHHhHHHHHhccHHHHHHHHHHHHH
Q 047932 58 ALCIFDYMLRMHPSPPPVSSFNILFGCLAK----NKHYDTVLSLFKRLNSTGLFPDLYTHSILINCRIMEAAALFTKLRV 133 (598)
Q Consensus 58 A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~a~~~~~~~~~ 133 (598)
++..+...... .++.++..+...|.. .+++++|+..|++..+.|
T Consensus 26 ~~~~~~~~a~~----g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---------------------------- 73 (490)
T 2xm6_A 26 NLEQLKQKAES----GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---------------------------- 73 (490)
T ss_dssp CHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----------------------------
T ss_pred HHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC----------------------------
Confidence 45556555442 377888888888887 778888888888776542
Q ss_pred cCCCCCHhhHHHHHHHHHh----cCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHh----cCCHHHHHHHHH
Q 047932 134 FGCEPDVFTYNTLINGLCR----TGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCK----EGFVDKAMELFL 205 (598)
Q Consensus 134 ~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~ 205 (598)
+...+..|...|.. .+++++|...|++....+ +...+..|...|.. .+++++|...|+
T Consensus 74 -----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---------~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~ 139 (490)
T 2xm6_A 74 -----YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---------LPQAQQNLGVMYHEGNGVKVDKAESVKWFR 139 (490)
T ss_dssp -----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred -----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 45567777888887 888999999999887754 46777778888887 788999999999
Q ss_pred HHhhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh----CCCHHHHHHHHHHH
Q 047932 206 QMKDENINPNVVTYNSLIHCFSH----ADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCK----NGKMEEASRLLDLM 277 (598)
Q Consensus 206 ~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~ 277 (598)
+..+.| +...+..|...|.. .+++++|.+.|++..+.| +...+..+...|.. .+++++|.++|++.
T Consensus 140 ~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a 213 (490)
T 2xm6_A 140 LAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKS 213 (490)
T ss_dssp HHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHH
Confidence 888764 66778888888877 788999999999888864 66777788888887 88999999999998
Q ss_pred HhcCCCcCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHcc
Q 047932 278 IQIGVHPNTFVYNTLMDGFCL----TGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCK----TKNVEEALNLYRKMLP 349 (598)
Q Consensus 278 ~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~ 349 (598)
.+.| +...+..+...|.. .+++++|...|+...+.+ +...+..+...|.. .+++++|+..|++..+
T Consensus 214 ~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~ 287 (490)
T 2xm6_A 214 ATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAE 287 (490)
T ss_dssp HHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHT
T ss_pred HHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
Confidence 8865 56677777777776 788999999999988765 56667777777777 8899999999999887
Q ss_pred CCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcC---CHHHHHHHHHHHhhCC
Q 047932 350 KGIRPTVVTYSTLFLGLFEV-----HQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNG---FVLEALELFCAIGNSK 421 (598)
Q Consensus 350 ~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~ 421 (598)
.+ +...+..+...+... +++++|..+|++..+.+ +...+..+...|...| ++++|..+|++..+.+
T Consensus 288 ~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~ 361 (490)
T 2xm6_A 288 QG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG 361 (490)
T ss_dssp TT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT
T ss_pred cC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC
Confidence 64 556677777777776 89999999999988865 4566777777777766 7889999999988764
Q ss_pred CCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCC
Q 047932 422 YELDIISYSCLIDGLCK----IGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCN----DGQMDKAHDLFLDMEAKG 491 (598)
Q Consensus 422 ~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 491 (598)
+...+..+...|.. .+++++|...|++..+.| +...+..|...|.. .+++++|...|++..+.+
T Consensus 362 ---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 362 ---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp ---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred ---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 67888888999988 889999999999998864 56778888888887 899999999999998875
No 17
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.87 E-value=3.2e-18 Score=174.98 Aligned_cols=141 Identities=14% Similarity=0.165 Sum_probs=94.6
Q ss_pred HHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhccHHHHHHHHHHHHHcCCCCCHh
Q 047932 62 FDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCRIMEAAALFTKLRVFGCEPDVF 141 (598)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~a~~~~~~~~~~~~~~~~~ 141 (598)
|+.+++.+|. +..+|..++.. .+.|++++|+.+|+++++. .| .+..
T Consensus 2 le~al~~~P~--~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~--~P-----------------------------~~~~ 47 (530)
T 2ooe_A 2 AEKKLEENPY--DLDAWSILIRE-AQNQPIDKARKTYERLVAQ--FP-----------------------------SSGR 47 (530)
T ss_dssp HHHHHHHCTT--CHHHHHHHHHH-HHSSCHHHHHHHHHHHHTT--CT-----------------------------TCHH
T ss_pred hhhHhhhCCC--CHHHHHHHHHH-HHhCCHHHHHHHHHHHHHH--CC-----------------------------CCHH
Confidence 6677778886 89999999984 7789999999999998865 23 2455
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHH-HhcCCHHHHHH----HHHHHhhC-CCCC-
Q 047932 142 TYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGV-CKEGFVDKAME----LFLQMKDE-NINP- 214 (598)
Q Consensus 142 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~-~~~g~~~~A~~----~~~~~~~~-~~~~- 214 (598)
.|..++..+.+.|++++|..+|++++... |+...|..++... ...|+.+.|.+ +|+..... |..|
T Consensus 48 ~w~~~~~~~~~~~~~~~a~~~~~ral~~~--------p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~ 119 (530)
T 2ooe_A 48 FWKLYIEAEIKAKNYDKVEKLFQRCLMKV--------LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIM 119 (530)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHTTTC--------CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcC--------CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcc
Confidence 67777777777777777777777777643 4666666665432 34456555544 55555432 3332
Q ss_pred CHHHHHHHHHHHHh---------cCCHHHHHHHHHHHHH
Q 047932 215 NVVTYNSLIHCFSH---------ADDWNEAKRLFIKMMD 244 (598)
Q Consensus 215 ~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~ 244 (598)
+...|...+..... .|+++.|..+|++.++
T Consensus 120 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~ 158 (530)
T 2ooe_A 120 SYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV 158 (530)
T ss_dssp CHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh
Confidence 44566665555443 5677777777777766
No 18
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.87 E-value=8.2e-19 Score=179.43 Aligned_cols=422 Identities=10% Similarity=-0.002 Sum_probs=306.7
Q ss_pred HHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047932 128 FTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQM 207 (598)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 207 (598)
|++.++.+ +-+...|..++. +.+.|++++|..+|+++.+.. |.+...|..++..+.+.|++++|..+|+++
T Consensus 2 le~al~~~-P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-------P~~~~~w~~~~~~~~~~~~~~~a~~~~~ra 72 (530)
T 2ooe_A 2 AEKKLEEN-PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQF-------PSSGRFWKLYIEAEIKAKNYDKVEKLFQRC 72 (530)
T ss_dssp HHHHHHHC-TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhhHhhhC-CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 34444443 347788999998 478999999999999999875 667889999999999999999999999999
Q ss_pred hhCCCCCCHHHHHHHHHHH-HhcCCHHHHHH----HHHHHHHC-CCCC-CHhhHHHHHHHHHh---------CCCHHHHH
Q 047932 208 KDENINPNVVTYNSLIHCF-SHADDWNEAKR----LFIKMMDQ-GVHP-NVVTFSVIVDELCK---------NGKMEEAS 271 (598)
Q Consensus 208 ~~~~~~~~~~~~~~l~~~~-~~~~~~~~a~~----~~~~~~~~-~~~~-~~~~~~~l~~~~~~---------~g~~~~a~ 271 (598)
... .|+...|...+... ...|+.+.|.+ +|+..+.. |..| +...|...+..... .|+++.|.
T Consensus 73 l~~--~p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~ 150 (530)
T 2ooe_A 73 LMK--VLHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVR 150 (530)
T ss_dssp TTT--CCCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHH
T ss_pred Hhc--CCChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHH
Confidence 986 36888887777533 34566666554 77766553 4433 45677777766554 68899999
Q ss_pred HHHHHHHhcCCCcCHHHHHHHHHHH-------------HhcCCHHHHHHHHHHHH------HCC---CCCC--------h
Q 047932 272 RLLDLMIQIGVHPNTFVYNTLMDGF-------------CLTGRVNHAKELFVSME------SNG---CMHD--------V 321 (598)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~ll~~~-------------~~~g~~~~a~~~~~~~~------~~~---~~~~--------~ 321 (598)
.+|++.++.........|....... ...+++..|..++.... +.. ++|+ .
T Consensus 151 ~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~ 230 (530)
T 2ooe_A 151 RVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQV 230 (530)
T ss_dssp HHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHH
T ss_pred HHHHHHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHH
Confidence 9999999842221123443332211 12456777777776532 211 2333 2
Q ss_pred hhHHHHHHHHHhc----CCH----HHHHHHHHHHccCCCCCCHHHHHHHHHHHHh-------cCCHH-------HHHHHH
Q 047932 322 VSYTTLINGYCKT----KNV----EEALNLYRKMLPKGIRPTVVTYSTLFLGLFE-------VHQVE-------HALKLF 379 (598)
Q Consensus 322 ~~~~~l~~~~~~~----~~~----~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~a~~~~ 379 (598)
..|...+...... ++. +.+..+|+++....+ .+...|..++..+.. .|+++ +|..+|
T Consensus 231 ~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p-~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~ 309 (530)
T 2ooe_A 231 DMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLG-HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIY 309 (530)
T ss_dssp HHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHH
Confidence 4555555433322 232 477888998887633 367788888887765 68876 899999
Q ss_pred HHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 047932 380 DEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDI-ISYSCLIDGLCKIGKLETAWELFQSLSRVGLL 458 (598)
Q Consensus 380 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 458 (598)
++..+.-.+.+...+..++..+.+.|++++|..+|+++++.. +.+. ..|..++..+.+.|++++|..+|++..+.. +
T Consensus 310 ~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~ 387 (530)
T 2ooe_A 310 ERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-R 387 (530)
T ss_dssp HHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-T
T ss_pred HHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcc-ccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-C
Confidence 999973235578899999999999999999999999999863 2233 589999999999999999999999998852 2
Q ss_pred CCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccccchhHHHHHHHhcccCCCCCC--
Q 047932 459 PNVVTYNIMIHG-LCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFIRNNETSKSSRGKLMSQMSSCWSMCFQPK-- 535 (598)
Q Consensus 459 p~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~-- 535 (598)
.+...|...+.. +...|++++|..+|++.++.. +.+...|..++..+.+.|+.++|.. +++++.... +..|+
T Consensus 388 ~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~--~~~~al~~~--~~~~~~~ 462 (530)
T 2ooe_A 388 TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRV--LFERVLTSG--SLPPEKS 462 (530)
T ss_dssp CCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHH--HHHHHHHSC--CSCGGGC
T ss_pred CchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHH--HHHHHHhcc--CCCHHHH
Confidence 233333333322 336899999999999998864 5578999999999999999999999 999999761 23343
Q ss_pred hHHHHH---HHHHhCCCCCChhhHHHhhhcCccccc
Q 047932 536 TLICSI---SIMLQKDMSPGDTMFSTALLMDPDCSC 568 (598)
Q Consensus 536 ~~~~~~---~~~~~~~~~~a~~~~~~~l~~~P~~~~ 568 (598)
...|.. .....|+.+.+..+.+++++..|+++.
T Consensus 463 ~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~~~~ 498 (530)
T 2ooe_A 463 GEIWARFLAFESNIGDLASILKVEKRRFTAFREEYE 498 (530)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCchhcc
Confidence 224433 455679999999999999999997554
No 19
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.87 E-value=3.7e-19 Score=170.41 Aligned_cols=293 Identities=13% Similarity=0.044 Sum_probs=214.2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcCHHHHHHH
Q 047932 213 NPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTL 292 (598)
Q Consensus 213 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 292 (598)
+.+...+..++..+...|++++|.++|+++.+.. +.+...+..++.++...|++++|...++++.+.. +.+...+..+
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 96 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAV 96 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHH
Confidence 3455666677777777788888888888777653 3345566667777777788888888888777753 3356677777
Q ss_pred HHHHHhcC-CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHhcCC
Q 047932 293 MDGFCLTG-RVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFEVHQ 371 (598)
Q Consensus 293 l~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 371 (598)
...+...| ++++|...|+++.... +.+...|..+...+...|++++|+..++++...... +...+..+...+...|+
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~ 174 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNN 174 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTC
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhh
Confidence 77777787 7888888888877654 445667777788888888888888888877765332 34556667777888888
Q ss_pred HHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCC--------CCCCHHHHHHHHHHHHHcCCHH
Q 047932 372 VEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSK--------YELDIISYSCLIDGLCKIGKLE 443 (598)
Q Consensus 372 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~ 443 (598)
+++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. .+....++..+..++...|+++
T Consensus 175 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 253 (330)
T 3hym_B 175 SKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA 253 (330)
T ss_dssp HHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHH
Confidence 888888888887764 4567778888888888888888888888776421 1334567888888888889999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCCc
Q 047932 444 TAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGF-IRNNET 512 (598)
Q Consensus 444 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~~ 512 (598)
+|...++++.+.. +.+...+..+..++...|++++|.+.++++.+.. +.+...+..+..++ ...|+.
T Consensus 254 ~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 254 EALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCch
Confidence 9999988887753 2356778888888888899999999998887754 45677777787777 455544
No 20
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.86 E-value=1e-18 Score=167.22 Aligned_cols=294 Identities=12% Similarity=0.002 Sum_probs=165.0
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHH
Q 047932 138 PDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVV 217 (598)
Q Consensus 138 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 217 (598)
.+...+..++..+...|++++|.++|+++.+.. +.+...+..++..+...|++++|..+++++.+.. +.+..
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-------p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~ 91 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-------PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPV 91 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-------CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHH
Confidence 355566667777777777777777777777654 4455566666677777777777777777776642 22556
Q ss_pred HHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHH
Q 047932 218 TYNSLIHCFSHAD-DWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTLMDGF 296 (598)
Q Consensus 218 ~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 296 (598)
.+..+...+...| ++++|...|+++.+.. +.+...+..+..++...|++++|...++++.+... .+...+..+...+
T Consensus 92 ~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~ 169 (330)
T 3hym_B 92 SWFAVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMK-GCHLPMLYIGLEY 169 (330)
T ss_dssp HHHHHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTT-TCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcc-ccHHHHHHHHHHH
Confidence 6666677777777 6777777777766543 22445566666666666666666666666665532 2344455555666
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 047932 297 CLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFEVHQVEHAL 376 (598)
Q Consensus 297 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 376 (598)
...|++++|...++.+.+.. +.+...+..+...+...|++++|...++++........
T Consensus 170 ~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~--------------------- 227 (330)
T 3hym_B 170 GLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIG--------------------- 227 (330)
T ss_dssp HHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTS---------------------
T ss_pred HHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhcc---------------------
Confidence 66666666666666665543 33445555555555556666666555555443210000
Q ss_pred HHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 047932 377 KLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVG 456 (598)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 456 (598)
.....+....++..+..++...|++++|...++++.+.. +.+..++..+..++...|++++|...++++.+..
T Consensus 228 ------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 300 (330)
T 3hym_B 228 ------NEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR 300 (330)
T ss_dssp ------CSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC
T ss_pred ------ccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC
Confidence 000002223444455555555555555555555554432 2244455555555555555555555555555431
Q ss_pred CCCCHHHHHHHHHHH
Q 047932 457 LLPNVVTYNIMIHGL 471 (598)
Q Consensus 457 ~~p~~~~~~~l~~~~ 471 (598)
+.+...+..+..++
T Consensus 301 -p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 301 -RDDTFSVTMLGHCI 314 (330)
T ss_dssp -SCCHHHHHHHHHHH
T ss_pred -CCchHHHHHHHHHH
Confidence 11344444444444
No 21
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.83 E-value=5.7e-19 Score=171.96 Aligned_cols=305 Identities=12% Similarity=0.039 Sum_probs=151.8
Q ss_pred cCCChHHHHH-HHHHHHHcCCCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhccHHHHHHH
Q 047932 51 NLITPNEALC-IFDYMLRMHPSPP--PVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCRIMEAAAL 127 (598)
Q Consensus 51 ~~g~~~~A~~-~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~a~~~ 127 (598)
..|++++|+. .|++++...|..| +...+..++..+.+.|++++|+..|+++++..
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~---------------------- 94 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD---------------------- 94 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC----------------------
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----------------------
Confidence 3455555555 5555444433311 23345555555555555555555555555431
Q ss_pred HHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047932 128 FTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQM 207 (598)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 207 (598)
+.+..++..++.+|.+.|++++|+..|+++.+.+ +.+..++..+...+...|++++|.+.++++
T Consensus 95 ---------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 158 (368)
T 1fch_A 95 ---------PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-------PDNQTALMALAVSFTNESLQRQACEILRDW 158 (368)
T ss_dssp ---------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ---------CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 1233445555555555555555555555555543 334555555555555555555555555555
Q ss_pred hhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCc-CH
Q 047932 208 KDENINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHP-NT 286 (598)
Q Consensus 208 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~ 286 (598)
...... +...+..+... .. . ..+ ...+.. +..+...|++++|...++++.+..... +.
T Consensus 159 ~~~~~~-~~~~~~~~~~~-------~~-------~----~~~-~~~~~~-~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~ 217 (368)
T 1fch_A 159 LRYTPA-YAHLVTPAEEG-------AG-------G----AGL-GPSKRI-LGSLLSDSLFLEVKELFLAAVRLDPTSIDP 217 (368)
T ss_dssp HHTSTT-TGGGCC----------------------------------CT-THHHHHHHHHHHHHHHHHHHHHHSTTSCCH
T ss_pred HHhCcC-cHHHHHHHHHH-------hh-------h----hcc-cHHHHH-HHHHhhcccHHHHHHHHHHHHHhCcCcccH
Confidence 543211 11111100000 00 0 000 000001 222225566666666666665543111 35
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHH
Q 047932 287 FVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGL 366 (598)
Q Consensus 287 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 366 (598)
.++..+..++...|++++|...++++.... +.+...+..+...+...|++++|+..++++..... .+...+..+...+
T Consensus 218 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~ 295 (368)
T 1fch_A 218 DVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQP-GYIRSRYNLGISC 295 (368)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHH
Confidence 556666666666666666666666665543 33455666666666666666666666666655432 2455666666666
Q ss_pred HhcCCHHHHHHHHHHHhhCCCC----------cCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 047932 367 FEVHQVEHALKLFDEMQHNDVA----------ADTYIYNTFIDGLCKNGFVLEALELFCA 416 (598)
Q Consensus 367 ~~~~~~~~a~~~~~~~~~~~~~----------~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 416 (598)
...|++++|...|+++.+.... ....++..+..++...|++++|..++++
T Consensus 296 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 296 INLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence 6666666666666666543110 1156677777777777777777766654
No 22
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.83 E-value=6.5e-19 Score=171.56 Aligned_cols=280 Identities=14% Similarity=-0.004 Sum_probs=175.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHH
Q 047932 218 TYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTLMDGFC 297 (598)
Q Consensus 218 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 297 (598)
.+..+...+...|++++|...|+++.+.. +.+..++..+..++...|++++|...++++.+.. +.+..++..+..++.
T Consensus 66 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~ 143 (368)
T 1fch_A 66 QPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFT 143 (368)
T ss_dssp SHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 34445555555555555555555555442 2234444445555555555555555555554442 223444444455555
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 047932 298 LTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFEVHQVEHALK 377 (598)
Q Consensus 298 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 377 (598)
..|++++|...++.+.... +.+...+..+... .. . ..+ ...+..+. .+...|++++|..
T Consensus 144 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~-------~~-------~----~~~-~~~~~~~~-~~~~~~~~~~A~~ 202 (368)
T 1fch_A 144 NESLQRQACEILRDWLRYT-PAYAHLVTPAEEG-------AG-------G----AGL-GPSKRILG-SLLSDSLFLEVKE 202 (368)
T ss_dssp HTTCHHHHHHHHHHHHHTS-TTTGGGCC----------------------------------CTTH-HHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHH-------hh-------h----hcc-cHHHHHHH-HHhhcccHHHHHH
Confidence 5555555555555544432 1111111110000 00 0 000 00011222 2337888999999
Q ss_pred HHHHHhhCCCCc-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 047932 378 LFDEMQHNDVAA-DTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVG 456 (598)
Q Consensus 378 ~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 456 (598)
.++++.+..... +..++..+...+...|++++|...|+++.... +.+..++..++.++...|++++|+..++++.+..
T Consensus 203 ~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 281 (368)
T 1fch_A 203 LFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ 281 (368)
T ss_dssp HHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999888764221 57888889999999999999999999988764 4467889999999999999999999999988753
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-----------HHHHHHHHHHHHhcCCccccchhHHHHHHH
Q 047932 457 LLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPD-----------CVIFNTIMLGFIRNNETSKSSRGKLMSQMS 525 (598)
Q Consensus 457 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 525 (598)
+.+...+..+..++.+.|++++|...|+++.+.. +.+ ..+|..+..+|...|++++|.. ++++..
T Consensus 282 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~--~~~~~l 357 (368)
T 1fch_A 282 -PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQ-RKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA--ADARDL 357 (368)
T ss_dssp -TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HTC------CCCCCHHHHHHHHHHHHHHTCGGGHHH--HHTTCH
T ss_pred -CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCCCccccccchhhHHHHHHHHHHHHhCChHhHHH--hHHHHH
Confidence 3357788889999999999999999999988642 222 6889999999999999999988 776544
No 23
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.81 E-value=5.5e-17 Score=163.68 Aligned_cols=396 Identities=12% Similarity=-0.053 Sum_probs=245.4
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCC-Ccc-ccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhC-----
Q 047932 138 PDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGE-FGV-VCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDE----- 210 (598)
Q Consensus 138 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----- 210 (598)
.....|+.|..++...|++++|++.|++..+.... .+. ..+....+|+.+..+|...|++++|...++++...
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 34567999999999999999999999987652100 000 01334678999999999999999999999887642
Q ss_pred C-C-CCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHH---HHhCCCHHHHHHHHHHHHhcCCC
Q 047932 211 N-I-NPNVVTYNSLIHCFSH--ADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDE---LCKNGKMEEASRLLDLMIQIGVH 283 (598)
Q Consensus 211 ~-~-~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~g~~~~a~~~~~~~~~~~~~ 283 (598)
+ . .....++..+..++.. .+++++|++.|++.++.. +-+...+..+..+ +...++.++|++.+++.++.. +
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p 206 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-P 206 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-S
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-C
Confidence 1 1 1234567666666655 457999999999998863 2245555555444 445678888999999988864 3
Q ss_pred cCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHH
Q 047932 284 PNTFVYNTLMDGFCL----TGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTY 359 (598)
Q Consensus 284 ~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 359 (598)
.+..++..+...+.. .|++++|.+.+++..... +.+...+..+...|...|++++|+..++++.+..+. +..++
T Consensus 207 ~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~ 284 (472)
T 4g1t_A 207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLH 284 (472)
T ss_dssp SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHH
T ss_pred cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHH
Confidence 355566655555544 467889999999988764 557788889999999999999999999999876433 56666
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHc
Q 047932 360 STLFLGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKI 439 (598)
Q Consensus 360 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 439 (598)
..+..+|...+.... ... ...........+.++.|...++++.... +.+..++..+...|...
T Consensus 285 ~~lg~~y~~~~~~~~---------~~~-------~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~ 347 (472)
T 4g1t_A 285 CQIGCCYRAKVFQVM---------NLR-------ENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALA 347 (472)
T ss_dssp HHHHHHHHHHHHHHH---------HC-------------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhh---------hHH-------HHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHh
Confidence 666665543211110 000 0001111122334677888888887654 33556778889999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCH--HHHHHHHH-HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccccc
Q 047932 440 GKLETAWELFQSLSRVGLLPNV--VTYNIMIH-GLCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFIRNNETSKSS 516 (598)
Q Consensus 440 g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 516 (598)
|++++|+..|++..+....+.. ..+..+.. .....|++++|+..|++.++. .|+.......+ ..+.
T Consensus 348 ~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~~~~---------~~l~ 416 (472)
T 4g1t_A 348 DQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKEKMK---------DKLQ 416 (472)
T ss_dssp TCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHHHHH---------HHHH
T ss_pred ccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHH---------HHHH
Confidence 9999999999998885433322 12333333 234778999999999999875 45543332222 2334
Q ss_pred hhHHHHHHHhcccCCCCCCh-HHHHH---HHHHhCCCCCChhhHHHhhhcCccccchhhH
Q 047932 517 RGKLMSQMSSCWSMCFQPKT-LICSI---SIMLQKDMSPGDTMFSTALLMDPDCSCDLES 572 (598)
Q Consensus 517 ~~~~~~~~~~~~~~~~~p~~-~~~~~---~~~~~~~~~~a~~~~~~~l~~~P~~~~~~~~ 572 (598)
+ ++++.++. .|+. ..+.. ++...|+.++|++.|++++++.|.+|.+...
T Consensus 417 ~--~~~~~l~~-----~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 417 K--IAKMRLSK-----NGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSW 469 (472)
T ss_dssp H--HHHHHHHH-----CC-CTTHHHHHHHHHHHHHHCC----------------------
T ss_pred H--HHHHHHHh-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhc
Confidence 5 66666644 3432 33333 6677899999999999999999999887643
No 24
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.81 E-value=1.2e-16 Score=161.26 Aligned_cols=386 Identities=10% Similarity=-0.045 Sum_probs=247.3
Q ss_pred CCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhC--------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----
Q 047932 179 PDTVTYNTIIDGVCKEGFVDKAMELFLQMKDE--------NINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQG---- 246 (598)
Q Consensus 179 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---- 246 (598)
.....|+.|...+...|++++|++.|++..+. ..+....+|+.+..+|...|++++|...+++..+..
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 34567899999999999999999999887542 112245688999999999999999999998876421
Q ss_pred --C-CCCHhhHHHHHHHHHh--CCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHCCCC
Q 047932 247 --V-HPNVVTFSVIVDELCK--NGKMEEASRLLDLMIQIGVHPNTFVYNTLMDG---FCLTGRVNHAKELFVSMESNGCM 318 (598)
Q Consensus 247 --~-~~~~~~~~~l~~~~~~--~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~---~~~~g~~~~a~~~~~~~~~~~~~ 318 (598)
. .....++.....++.. .+++++|+..|++.++... .+...+..+..+ +...++.++|++.+++..+.. +
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p-~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p 206 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKP-KNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-P 206 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-S
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-C
Confidence 0 1123455555555544 4568899999999888642 244555555444 344577788888888887764 3
Q ss_pred CChhhHHHHHHHHHh----cCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHH
Q 047932 319 HDVVSYTTLINGYCK----TKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFEVHQVEHALKLFDEMQHNDVAADTYIY 394 (598)
Q Consensus 319 ~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 394 (598)
.+...+..+...+.. .+++++|.+.+++...... .+..++..+...+...|++++|...+.++.+.. +.+..++
T Consensus 207 ~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~ 284 (472)
T 4g1t_A 207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAP-GVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLH 284 (472)
T ss_dssp SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHH
T ss_pred cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCc-cHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHH
Confidence 455556555554443 4567888888888776543 366778888888888899999999888888764 4456666
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 047932 395 NTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCND 474 (598)
Q Consensus 395 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 474 (598)
..+..+|...+....+.. ...........+.++.|...+++..+.. +.+..++..+...+...
T Consensus 285 ~~lg~~y~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~ 347 (472)
T 4g1t_A 285 CQIGCCYRAKVFQVMNLR----------------ENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALA 347 (472)
T ss_dssp HHHHHHHHHHHHHHHHC----------------------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhhHH----------------HHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHh
Confidence 666665543221111100 0001111122234788999999988753 23456788899999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCH--HHHHHHHH-HHHhcCCccccchhHHHHHHHhcccCCCCCChHHHHHHHHHhCCCCC
Q 047932 475 GQMDKAHDLFLDMEAKGVEPDC--VIFNTIML-GFIRNNETSKSSRGKLMSQMSSCWSMCFQPKTLICSISIMLQKDMSP 551 (598)
Q Consensus 475 g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 551 (598)
|++++|+..|+++++....+.. ..+..+.. .+...|++++|+. .++++++. .|+........ ..
T Consensus 348 ~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~--~y~kal~i-----~~~~~~~~~~~------~~ 414 (472)
T 4g1t_A 348 DQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIH--HFIEGVKI-----NQKSREKEKMK------DK 414 (472)
T ss_dssp TCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHH--HHHHHHHS-----CCCCHHHHHHH------HH
T ss_pred ccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHH--HHHHHHhc-----CcccHHHHHHH------HH
Confidence 9999999999999986533222 12233332 3457899999999 99999855 67765444322 22
Q ss_pred ChhhHHHhhhcCccccchhhHhhhhCCCCcc-chhhheecccccccCC
Q 047932 552 GDTMFSTALLMDPDCSCDLESLIHNTDLDQD-ELAYVITNSTWLLMPN 598 (598)
Q Consensus 552 a~~~~~~~l~~~P~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~ 598 (598)
+...++++++.+|+++.++..|........+ +.|....++|.++.|.
T Consensus 415 l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~ 462 (472)
T 4g1t_A 415 LQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSL 462 (472)
T ss_dssp HHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC---------------
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 4567889999999999999998665554333 6788899999988763
No 25
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.80 E-value=9.8e-18 Score=162.98 Aligned_cols=234 Identities=13% Similarity=0.054 Sum_probs=149.9
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHH
Q 047932 139 DVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVT 218 (598)
Q Consensus 139 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 218 (598)
+...+..++..+.+.|++++|+..|+++.+.. +.+..+|..+...+...|++++|+..|+++.... +.+..+
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~ 135 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-------PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKA 135 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHH
Confidence 45568888888888899999999998888865 5567888888888888888888888888888753 236778
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HhhH----------HHHHHHHHhCCCHHHHHHHHHHHHhcCCC-cCH
Q 047932 219 YNSLIHCFSHADDWNEAKRLFIKMMDQGVHPN-VVTF----------SVIVDELCKNGKMEEASRLLDLMIQIGVH-PNT 286 (598)
Q Consensus 219 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~----------~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~ 286 (598)
+..+..+|...|++++|...|+++.+.. |+ ...+ ..+...+...|++++|...++++.+.... .+.
T Consensus 136 ~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 213 (365)
T 4eqf_A 136 LMALAVSYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDP 213 (365)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCH
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCH
Confidence 8888888888888888888888887642 22 1122 22355666666666666666666665321 145
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHH
Q 047932 287 FVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGL 366 (598)
Q Consensus 287 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 366 (598)
.++..+...+...|++++|...|+++.+.. +.+..+|..+..+|...|++++|+..|+++....+. +..++..+..++
T Consensus 214 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~ 291 (365)
T 4eqf_A 214 DLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG-FIRSRYNLGISC 291 (365)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHH
Confidence 556666666666666666666666665543 334555556666666666666666666655544221 345555555555
Q ss_pred HhcCCHHHHHHHHHHHhh
Q 047932 367 FEVHQVEHALKLFDEMQH 384 (598)
Q Consensus 367 ~~~~~~~~a~~~~~~~~~ 384 (598)
...|++++|...|+++.+
T Consensus 292 ~~~g~~~~A~~~~~~al~ 309 (365)
T 4eqf_A 292 INLGAYREAVSNFLTALS 309 (365)
T ss_dssp HHHTCCHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHH
Confidence 555555555555555543
No 26
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.80 E-value=1.3e-17 Score=162.12 Aligned_cols=231 Identities=12% Similarity=-0.023 Sum_probs=100.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHH
Q 047932 218 TYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTLMDGFC 297 (598)
Q Consensus 218 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 297 (598)
.+..+...+...|++++|...|+++++.. +.+..++..+..++...|++++|+..|+++++.. +.+..++..+..+|.
T Consensus 67 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 144 (365)
T 4eqf_A 67 GAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYT 144 (365)
T ss_dssp THHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 34444444555555555555555544432 2234444445555555555555555555554432 223444455555555
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCC----------hhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCC-CCHHHHHHHHHHH
Q 047932 298 LTGRVNHAKELFVSMESNGCMHD----------VVSYTTLINGYCKTKNVEEALNLYRKMLPKGIR-PTVVTYSTLFLGL 366 (598)
Q Consensus 298 ~~g~~~~a~~~~~~~~~~~~~~~----------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~ 366 (598)
..|++++|...++++.+.. +.+ ...+..+...+...|++++|+..++++...... .+..++..+...+
T Consensus 145 ~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 223 (365)
T 4eqf_A 145 NTSHQQDACEALKNWIKQN-PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLF 223 (365)
T ss_dssp HTTCHHHHHHHHHHHHHHC-HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhC-ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHH
Confidence 5555555555555544431 101 111222344445555555555555555443211 1344444444444
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 047932 367 FEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAW 446 (598)
Q Consensus 367 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 446 (598)
...|++++|...|+++.+.. +.+..++..+..++...|++++|+..|+++.+.. +.+..++..+..+|...|++++|.
T Consensus 224 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 301 (365)
T 4eqf_A 224 HLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYREAV 301 (365)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHH
Confidence 44455555555544444432 2234444444444444444444444444444332 223444444444444444444444
Q ss_pred HHHHHHH
Q 047932 447 ELFQSLS 453 (598)
Q Consensus 447 ~~~~~~~ 453 (598)
..|+++.
T Consensus 302 ~~~~~al 308 (365)
T 4eqf_A 302 SNFLTAL 308 (365)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
No 27
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.80 E-value=3.6e-18 Score=162.04 Aligned_cols=283 Identities=12% Similarity=0.087 Sum_probs=84.8
Q ss_pred cccCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhccHHHHHHHH
Q 047932 49 DINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCRIMEAAALF 128 (598)
Q Consensus 49 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~a~~~~ 128 (598)
+-+.|++++|.++++++ +++.+|..++.++.+.|++++|++.|.+. +
T Consensus 13 l~~~~~ld~A~~fae~~-------~~~~vWs~La~A~l~~g~~~eAIdsfika------~-------------------- 59 (449)
T 1b89_A 13 IEHIGNLDRAYEFAERC-------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------D-------------------- 59 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHccCHHHHHHHHHhC-------CChHHHHHHHHHHHHcCCHHHHHHHHHcC------C--------------------
Confidence 34678899999999998 24469999999999999999999999653 2
Q ss_pred HHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 047932 129 TKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMK 208 (598)
Q Consensus 129 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 208 (598)
|...|..++..+...|++++|+..++...+. .+++.+.+.++.+|.+.|+++++.++++
T Consensus 60 ----------D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~--------~~~~~i~~~Li~~Y~Klg~l~e~e~f~~--- 118 (449)
T 1b89_A 60 ----------DPSSYMEVVQAANTSGNWEELVKYLQMARKK--------ARESYVETELIFALAKTNRLAELEEFIN--- 118 (449)
T ss_dssp -------------------------------------------------------------------CHHHHTTTTT---
T ss_pred ----------CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--------CccchhHHHHHHHHHHhCCHHHHHHHHc---
Confidence 3334445555555566666666654444432 2334555556666666666655555542
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcCHHH
Q 047932 209 DENINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFV 288 (598)
Q Consensus 209 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 288 (598)
.|+..+|+.++..|...|.+++|...|..+ ..|..++.++.+.|++++|.+.+.++ .++.+
T Consensus 119 ----~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~ 179 (449)
T 1b89_A 119 ----GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRT 179 (449)
T ss_dssp ----CC----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHH
T ss_pred ----CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchh
Confidence 134456666666666666666666666544 24555666666666666666666555 14555
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHh
Q 047932 289 YNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFE 368 (598)
Q Consensus 289 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 368 (598)
|..++.+|...|+++.|......+. ..+.....++..|.+.|.+++|+.+++...... +-....|+-+...+++
T Consensus 180 Wk~v~~aCv~~~ef~lA~~~~l~L~-----~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~k 253 (449)
T 1b89_A 180 WKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSK 253 (449)
T ss_dssp HHHHHHHHHHTTCHHHHHHTTTTTT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHH-----hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHh
Confidence 6666666666666666643333221 122223345555666666666666666655443 2234445544444443
Q ss_pred --cCCHHHHHHHHHHHhhCCCCc------CHHHHHHHHHHHHHcCCHHHHHH
Q 047932 369 --VHQVEHALKLFDEMQHNDVAA------DTYIYNTFIDGLCKNGFVLEALE 412 (598)
Q Consensus 369 --~~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~ 412 (598)
.++..+.++.|.. +.++++ +...|..++..|...++++.|..
T Consensus 254 y~p~k~~ehl~~~~~--~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~ 303 (449)
T 1b89_A 254 FKPQKMREHLELFWS--RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 303 (449)
T ss_dssp TCHHHHHHHHHHHST--TSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHH
T ss_pred cCHHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHH
Confidence 2222233332221 111222 23345555556666666665554
No 28
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.79 E-value=3.6e-14 Score=150.33 Aligned_cols=396 Identities=14% Similarity=0.166 Sum_probs=275.5
Q ss_pred cCCChHHHHHHHHHHHHcCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhc-cHHHHHHHH
Q 047932 51 NLITPNEALCIFDYMLRMHP-SPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINC-RIMEAAALF 128 (598)
Q Consensus 51 ~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~-~~~~a~~~~ 128 (598)
..|.+.+|+++++++.-... ...+....+.++..-.+. +..+..+...+.... .. ......++.. .+++|..+|
T Consensus 997 ~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~--d~-~eIA~Iai~lglyEEAf~IY 1072 (1630)
T 1xi4_A 997 TADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY--DA-PDIANIAISNELFEEAFAIF 1072 (1630)
T ss_pred hCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc--cH-HHHHHHHHhCCCHHHHHHHH
Confidence 67888888888888873321 113445566666665555 445555555555422 11 1122222222 788888888
Q ss_pred HHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 047932 129 TKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMK 208 (598)
Q Consensus 129 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 208 (598)
++... .....+.+ +...|++++|.++.++. .+..+|..+..++...|++++|++.|.+.
T Consensus 1073 kKa~~-----~~~A~~VL---ie~i~nldrAiE~Aerv------------n~p~vWsqLAKAql~~G~~kEAIdsYiKA- 1131 (1630)
T 1xi4_A 1073 RKFDV-----NTSAVQVL---IEHIGNLDRAYEFAERC------------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA- 1131 (1630)
T ss_pred HHcCC-----HHHHHHHH---HHHHhhHHHHHHHHHhc------------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc-
Confidence 87631 11222222 22677888888887754 23778888999999999999999998664
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcCHHH
Q 047932 209 DENINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFV 288 (598)
Q Consensus 209 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 288 (598)
.|...|..++.++.+.|++++|.+.|...++.. ++....+.++.+|++.+++++...++ + .++...
T Consensus 1132 -----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad 1197 (1630)
T 1xi4_A 1132 -----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAH 1197 (1630)
T ss_pred -----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHH
Confidence 277888889999999999999999998877753 33333445888888888888544332 2 345566
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHh
Q 047932 289 YNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFE 368 (598)
Q Consensus 289 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 368 (598)
+..+...|...|++++|..+|..+ ..|..++.++.+.|++++|.+.+++.. +..+|..+..+|..
T Consensus 1198 ~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~------n~~aWkev~~acve 1262 (1630)
T 1xi4_A 1198 IQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFACVD 1262 (1630)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC------CHHHHHHHHHHHhh
Confidence 777888899999999999999875 368889999999999999999998773 56888888888888
Q ss_pred cCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHc--CCHHHHH
Q 047932 369 VHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKI--GKLETAW 446 (598)
Q Consensus 369 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~ 446 (598)
.|++..|......+ ..++..+..++..|.+.|.+++|+.+++..+... +-....|+.+...|++. ++..++.
T Consensus 1263 ~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmEhl 1336 (1630)
T 1xi4_A 1263 GKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHL 1336 (1630)
T ss_pred hhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHH
Confidence 88888888866542 3356677788999999999999999998888665 44556777777777764 3555556
Q ss_pred HHHHHHHhCCCCC------CHHHHHHHHHHHHhcCCHHHHHHHH-------------HHHHHCCCCCCHHHHHHHHHHHH
Q 047932 447 ELFQSLSRVGLLP------NVVTYNIMIHGLCNDGQMDKAHDLF-------------LDMEAKGVEPDCVIFNTIMLGFI 507 (598)
Q Consensus 447 ~~~~~~~~~~~~p------~~~~~~~l~~~~~~~g~~~~A~~~~-------------~~~~~~~~~p~~~~~~~l~~~~~ 507 (598)
++|..-.. +++ +...|..++..|.+.|+++.|...+ +..+. -..|...|...+.-|.
T Consensus 1337 k~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~--kv~n~elyykai~Fyl 1412 (1630)
T 1xi4_A 1337 ELFWSRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIIT--KVANVELYYRAIQFYL 1412 (1630)
T ss_pred HHHHHhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhc--ccccHHHHHHHHHHHH
Confidence 65554322 222 4667888999999999999988332 22221 2446777777777777
Q ss_pred hcC
Q 047932 508 RNN 510 (598)
Q Consensus 508 ~~g 510 (598)
..+
T Consensus 1413 ~~~ 1415 (1630)
T 1xi4_A 1413 EFK 1415 (1630)
T ss_pred hhC
Confidence 444
No 29
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.79 E-value=3.4e-17 Score=156.46 Aligned_cols=280 Identities=9% Similarity=-0.058 Sum_probs=163.1
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHH
Q 047932 139 DVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVT 218 (598)
Q Consensus 139 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 218 (598)
+...+..++..+...|++++|..+|+++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+..+
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~ 91 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-------PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAV 91 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHH
Confidence 44556777888888888888888888888765 4567788888888888888888888888887753 336777
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcCHHHHHHH-HH-HH
Q 047932 219 YNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTL-MD-GF 296 (598)
Q Consensus 219 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l-l~-~~ 296 (598)
+..+...+...|++++|.+.++++.+.. +.+...+..+...+ ++......+ .. .+
T Consensus 92 ~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~ 148 (327)
T 3cv0_A 92 HAALAVSHTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQAD----------------------VDIDDLNVQSEDFFF 148 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTTTC------------------------------------------CCT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHH----------------------HHHHHHHHHHHhHHH
Confidence 8888888888888888888888887753 22222333221000 000000111 11 13
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 047932 297 CLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFEVHQVEHAL 376 (598)
Q Consensus 297 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 376 (598)
...|++++|...++++.+.. +.+...+..+...+...|++++|...++++..... .+..++..+...+...|++++|.
T Consensus 149 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~ 226 (327)
T 3cv0_A 149 AAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRP-DDAQLWNKLGATLANGNRPQEAL 226 (327)
T ss_dssp TSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHH
Confidence 34445555555555554432 22444455555555555555555555555544322 13445555555555556666666
Q ss_pred HHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCC-----------CHHHHHHHHHHHHHcCCHHHH
Q 047932 377 KLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYEL-----------DIISYSCLIDGLCKIGKLETA 445 (598)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~A 445 (598)
..++++.+.. +.+...+..+...+...|++++|...++++....... +..++..+..++...|++++|
T Consensus 227 ~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 305 (327)
T 3cv0_A 227 DAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLV 305 (327)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHH
Confidence 6665555442 3345555556666666666666666666555432111 345566666666666666666
Q ss_pred HHHHHHH
Q 047932 446 WELFQSL 452 (598)
Q Consensus 446 ~~~~~~~ 452 (598)
..++++.
T Consensus 306 ~~~~~~~ 312 (327)
T 3cv0_A 306 ELTYAQN 312 (327)
T ss_dssp HHHTTCC
T ss_pred HHHHHHH
Confidence 6666543
No 30
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.78 E-value=3.2e-17 Score=152.68 Aligned_cols=218 Identities=10% Similarity=0.066 Sum_probs=91.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCC-CHHHHHHHHHHHHhcC
Q 047932 292 LMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRP-TVVTYSTLFLGLFEVH 370 (598)
Q Consensus 292 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~ 370 (598)
+.++|...|+++.|...++.. .+|+..++..+...+...++.++|++.++++...+..| +...+..+...+...|
T Consensus 40 l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g 115 (291)
T 3mkr_A 40 LYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQ 115 (291)
T ss_dssp HHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCC
Confidence 334444444444444433221 12333444444444444444444444444444332212 2333333334444444
Q ss_pred CHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHH-H--HHHHHHHHHHcCCHHHHHH
Q 047932 371 QVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDII-S--YSCLIDGLCKIGKLETAWE 447 (598)
Q Consensus 371 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~--~~~l~~~~~~~g~~~~A~~ 447 (598)
++++|+..+++ +.+...+..++..+.+.|++++|...|+++.+.. |+.. . ...++..+...|++++|..
T Consensus 116 ~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~ 187 (291)
T 3mkr_A 116 NPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYY 187 (291)
T ss_dssp CHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHH
T ss_pred CHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHH
Confidence 44444444443 2233444444444444444444444444444332 1211 0 0111122222344555555
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccc-cchhHHHHHHH
Q 047932 448 LFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFIRNNETSK-SSRGKLMSQMS 525 (598)
Q Consensus 448 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~ 525 (598)
+|+++.+. .+.+...++.+..++.+.|++++|...|+++++.. +.+..++..++.++...|+.++ +.+ +++++.
T Consensus 188 ~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~--~~~~~~ 262 (291)
T 3mkr_A 188 IFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHPETLINLVVLSQHLGKPPEVTNR--YLSQLK 262 (291)
T ss_dssp HHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHH--HHHHHH
T ss_pred HHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCCHHHHHH--HHHHHH
Confidence 55554443 12234444444445555555555555555544432 3344444444444444444433 234 444444
No 31
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.78 E-value=7.8e-15 Score=155.30 Aligned_cols=380 Identities=12% Similarity=0.125 Sum_probs=288.9
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC--CCCHHhHHHHHhc----cHHHHHHHHHHHHHcCCCCCHhhHHHH
Q 047932 73 PPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGL--FPDLYTHSILINC----RIMEAAALFTKLRVFGCEPDVFTYNTL 146 (598)
Q Consensus 73 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~p~~~~~~~ll~~----~~~~a~~~~~~~~~~~~~~~~~~~~~l 146 (598)
.++.--...+..|...|.+.+|++++++..-.+- +-+...-+.++.. +.....+..++.... ....+
T Consensus 983 ~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~~-------d~~eI 1055 (1630)
T 1xi4_A 983 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLDNY-------DAPDI 1055 (1630)
T ss_pred cCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHhChhhHHHHHHHhhhc-------cHHHH
Confidence 4666677888899999999999999999984321 1122223333333 444444444444321 23457
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 047932 147 INGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTYNSLIHCF 226 (598)
Q Consensus 147 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 226 (598)
...+...|++++|..+|++.... ....+.++. ..+++++|.++.++.. +..+|..+..++
T Consensus 1056 A~Iai~lglyEEAf~IYkKa~~~-----------~~A~~VLie---~i~nldrAiE~Aervn------~p~vWsqLAKAq 1115 (1630)
T 1xi4_A 1056 ANIAISNELFEEAFAIFRKFDVN-----------TSAVQVLIE---HIGNLDRAYEFAERCN------EPAVWSQLAKAQ 1115 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHHcCCH-----------HHHHHHHHH---HHhhHHHHHHHHHhcC------CHHHHHHHHHHH
Confidence 88899999999999999996421 222333333 6788999999998662 578899999999
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHH
Q 047932 227 SHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTLMDGFCLTGRVNHAK 306 (598)
Q Consensus 227 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 306 (598)
...|++++|++.|.+. .+...|..++.++.+.|++++|.+.+....+.. +++.....++.+|++.++++...
T Consensus 1116 l~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele 1187 (1630)
T 1xi4_A 1116 LQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELE 1187 (1630)
T ss_pred HhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHH
Confidence 9999999999999663 377788899999999999999999999988764 34444446889999999988644
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 047932 307 ELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFEVHQVEHALKLFDEMQHND 386 (598)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 386 (598)
... . .++...|..+...|...|++++|...|..+ ..|..+..++.+.|++++|.+.+++..
T Consensus 1188 ~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~--- 1248 (1630)
T 1xi4_A 1188 EFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN--- 1248 (1630)
T ss_pred HHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC---
Confidence 332 2 346677778999999999999999999985 478999999999999999999998873
Q ss_pred CCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 047932 387 VAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNI 466 (598)
Q Consensus 387 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 466 (598)
+..+|..+..+|...|++..|......+ ..++..+..++..|.+.|.+++|+.+++..+... +-....|.-
T Consensus 1249 ---n~~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftE 1319 (1630)
T 1xi4_A 1249 ---STRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTE 1319 (1630)
T ss_pred ---CHHHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHH
Confidence 5678999999999999999999876643 3467778899999999999999999999887643 223446666
Q ss_pred HHHHHHh--cCCHHHHHHHHHHHHHCCCCC------CHHHHHHHHHHHHhcCCccccch
Q 047932 467 MIHGLCN--DGQMDKAHDLFLDMEAKGVEP------DCVIFNTIMLGFIRNNETSKSSR 517 (598)
Q Consensus 467 l~~~~~~--~g~~~~A~~~~~~~~~~~~~p------~~~~~~~l~~~~~~~g~~~~A~~ 517 (598)
+...+++ -++..++.++|..-. +++| +...|..++..|.+.|+++.|..
T Consensus 1320 LaiLyaKy~peklmEhlk~f~~ri--ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1320 LAILYSKFKPQKMREHLELFWSRV--NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhc--ccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 6666664 456666666665433 3444 56789999999999999998773
No 32
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.78 E-value=5e-17 Score=155.27 Aligned_cols=244 Identities=9% Similarity=-0.047 Sum_probs=103.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH
Q 047932 183 TYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELC 262 (598)
Q Consensus 183 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 262 (598)
.+..+...+...|++++|..+|+++.+... .+...+..+..++...|++++|...++++.+.. +.+..++..+...+.
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAAP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 100 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHH
Confidence 344455555555555555555555544321 244444445555555555555555555554431 223334444444444
Q ss_pred hCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHH-HH-HHHhcCCHHHH
Q 047932 263 KNGKMEEASRLLDLMIQIGVHPNTFVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTL-IN-GYCKTKNVEEA 340 (598)
Q Consensus 263 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~-~~~~~~~~~~A 340 (598)
..|++++|.+.++.+.+.... +...+..+... .++......+ .. .+...|++++|
T Consensus 101 ~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~A 157 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLSQPQ-YEQLGSVNLQA----------------------DVDIDDLNVQSEDFFFAAPNEYREC 157 (327)
T ss_dssp HTTCHHHHHHHHHHHHHTSTT-TTTC------------------------------------------CCTTSHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHH----------------------HHHHHHHHHHHHhHHHHHcccHHHH
Confidence 444444444444444433111 11111100000 0000000011 11 14444555555
Q ss_pred HHHHHHHccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhC
Q 047932 341 LNLYRKMLPKGIRPTVVTYSTLFLGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNS 420 (598)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 420 (598)
...++++...... +...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...|+++.+.
T Consensus 158 ~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 235 (327)
T 3cv0_A 158 RTLLHAALEMNPN-DAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDI 235 (327)
T ss_dssp HHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 5555555443221 34444555555555555555555555544432 223444444444445555555555555444433
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 047932 421 KYELDIISYSCLIDGLCKIGKLETAWELFQSLSR 454 (598)
Q Consensus 421 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 454 (598)
. +.+..++..+..++...|++++|...++++.+
T Consensus 236 ~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 268 (327)
T 3cv0_A 236 N-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIY 268 (327)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred C-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 2 22344444444444444444444444444443
No 33
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.77 E-value=1.5e-16 Score=148.26 Aligned_cols=251 Identities=11% Similarity=0.033 Sum_probs=142.7
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHH
Q 047932 190 GVCKEGFVDKAMELFLQMKDENINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEE 269 (598)
Q Consensus 190 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 269 (598)
-....|++..|+..++........+.......+.++|...|+++.|+..++. .-+|+..++..+...+...|+.++
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~ 83 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDA 83 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHH
T ss_pred HHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHH
Confidence 3445677777777666654432111123445556677777777777665543 123455566666666666667777
Q ss_pred HHHHHHHHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHc
Q 047932 270 ASRLLDLMIQIGVHP-NTFVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKML 348 (598)
Q Consensus 270 a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 348 (598)
|++.++++...+..| +...+..+...+...|++++|++.+++ +.+...+..++..+.+.|++++|.+.++++.
T Consensus 84 A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 157 (291)
T 3mkr_A 84 IVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQ 157 (291)
T ss_dssp HHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 777777666554323 344555555666667777777766665 3455666666666666667777766666666
Q ss_pred cCCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCC
Q 047932 349 PKGIRPTVVTY---STLFLGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELD 425 (598)
Q Consensus 349 ~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 425 (598)
... |+.... ...+..+...|++++|..+|+++.+.. +.+...++.+..++.+.|++++|...|++++... +.+
T Consensus 158 ~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~ 233 (291)
T 3mkr_A 158 DQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGH 233 (291)
T ss_dssp HHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred hhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCC
Confidence 543 222111 111222233456666666666666542 4455566666666666666666666666655543 335
Q ss_pred HHHHHHHHHHHHHcCCHHH-HHHHHHHHHh
Q 047932 426 IISYSCLIDGLCKIGKLET-AWELFQSLSR 454 (598)
Q Consensus 426 ~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~ 454 (598)
..++..++..+...|+.++ +.++++++.+
T Consensus 234 ~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 234 PETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 5556666666666666544 4455566555
No 34
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.77 E-value=4.9e-17 Score=154.30 Aligned_cols=351 Identities=12% Similarity=0.130 Sum_probs=170.3
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC
Q 047932 151 CRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTYNSLIHCFSHAD 230 (598)
Q Consensus 151 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 230 (598)
.+.|+.++|.+.++++.. +.+|..++.++.+.|++++|++.|.+. +|..+|..++..+...|
T Consensus 14 ~~~~~ld~A~~fae~~~~------------~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g 75 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNE------------PAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSG 75 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCC------------hHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCC
Confidence 367889999999998822 358999999999999999999999653 47779999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 047932 231 DWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTLMDGFCLTGRVNHAKELFV 310 (598)
Q Consensus 231 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 310 (598)
++++|+..++..++. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|.+++|...|.
T Consensus 76 ~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~ 146 (449)
T 1b89_A 76 NWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYN 146 (449)
T ss_dssp -----------------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHH
T ss_pred CHHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999988877764 4557788899999999999999888774 3677799999999999999999999999
Q ss_pred HHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcC
Q 047932 311 SMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFEVHQVEHALKLFDEMQHNDVAAD 390 (598)
Q Consensus 311 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 390 (598)
.+ ..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|...... +...
T Consensus 147 ~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ 206 (449)
T 1b89_A 147 NV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVH 206 (449)
T ss_dssp HT---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTC
T ss_pred Hh---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhC
Confidence 76 46999999999999999999999998 2789999999999999999999665543 2234
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhCCCCC------CHH
Q 047932 391 TYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKI--GKLETAWELFQSLSRVGLLP------NVV 462 (598)
Q Consensus 391 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~~~p------~~~ 462 (598)
+.....++..|.+.|.+++|..+++..+... +-....|+.+...|++- ++..+.++.|.. +.+++| +..
T Consensus 207 ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~--~ini~k~~~~~~~~~ 283 (449)
T 1b89_A 207 ADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWS--RVNIPKVLRAAEQAH 283 (449)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST--TSCHHHHHHHHHTTT
T ss_pred HhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhcCcHHHHHHHHHH
Confidence 4455678999999999999999999998766 56788888888888764 344445554432 222333 356
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC-----------CCCCCHHHHHHHHHHHHhcCCccccchhHHHHHHHhcccCC
Q 047932 463 TYNIMIHGLCNDGQMDKAHDLFLDMEAK-----------GVEPDCVIFNTIMLGFIRNNETSKSSRGKLMSQMSSCWSMC 531 (598)
Q Consensus 463 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----------~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 531 (598)
.|..+...|.+.++++.|...+-+-... .-..+...|...+.-|. +.....+. -+-....
T Consensus 284 ~w~e~~~ly~~~~e~d~A~~tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl--~~~p~~l~--~ll~~l~----- 354 (449)
T 1b89_A 284 LWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYL--EFKPLLLN--DLLMVLS----- 354 (449)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHH--HHCGGGHH--HHHHHHG-----
T ss_pred HHHHHHHHHHhhchHHHHHHHHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHH--hcCHHHHH--HHHHHHH-----
Confidence 7889999999999999987744221110 01335667777777776 33344444 3333321
Q ss_pred CCCChHHHHHHHHHhCCCCCChhhHHHhh
Q 047932 532 FQPKTLICSISIMLQKDMSPGDTMFSTAL 560 (598)
Q Consensus 532 ~~p~~~~~~~~~~~~~~~~~a~~~~~~~l 560 (598)
.+-|....-...+..|++......++.+.
T Consensus 355 ~~ld~~r~v~~~~~~~~l~l~~~yl~~v~ 383 (449)
T 1b89_A 355 PRLDHTRAVNYFSKVKQLPLVKPYLRSVQ 383 (449)
T ss_dssp GGCCHHHHHHHHHHTTCTTTTHHHHHHHH
T ss_pred hccCcHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 12333333335666788887777765544
No 35
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.71 E-value=1.6e-15 Score=150.95 Aligned_cols=338 Identities=11% Similarity=0.010 Sum_probs=183.0
Q ss_pred ccCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCh---hHHHHHHHHHHhCCCCCCHHhHHHH-Hhc------
Q 047932 50 INLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHY---DTVLSLFKRLNSTGLFPDLYTHSIL-INC------ 119 (598)
Q Consensus 50 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~p~~~~~~~l-l~~------ 119 (598)
.+.|++++|.+.|+++.+.+ ++.++..+...+...|++ ++|+.+|++..+. .|+....... +..
T Consensus 14 ~~~g~~~~A~~~~~~aa~~g----~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~--~~~A~~~Lg~~~~~~~~~~~ 87 (452)
T 3e4b_A 14 LKRGDTVTAQQNYQQLAELG----YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT--SPRAQARLGRLLAAKPGATE 87 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHT----CCTGGGTCC------------------------------CHHHHHHHHHTC--CCH
T ss_pred HhCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC--CHHHHHHHHHHHHhCCCCCC
Confidence 46788999999999987653 445666777777778888 8899999888865 4443332222 222
Q ss_pred -cHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHH---HHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcC
Q 047932 120 -RIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVA---LNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEG 195 (598)
Q Consensus 120 -~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A---~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 195 (598)
+.++|...|++....| +...+..|...|...+..+.+ .+.+......+ +...+..+...|...+
T Consensus 88 ~~~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---------~~~a~~~Lg~~y~~~~ 155 (452)
T 3e4b_A 88 AEHHEAESLLKKAFANG---EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---------YPEAGLAQVLLYRTQG 155 (452)
T ss_dssp HHHHHHHHHHHHHHHTT---CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---------CTTHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---------CHHHHHHHHHHHHcCC
Confidence 5677888888877754 233667777777766554433 33333333322 3556666777777776
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhC----CCHH
Q 047932 196 FVDKAMELFLQMKDENINPNVVTYNSLIHCFSHAD---DWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKN----GKME 268 (598)
Q Consensus 196 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~ 268 (598)
.++++.+....+...-...+...+..|...|...| +.++|++.|++..+.| .++...+..+...|... ++++
T Consensus 156 ~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~ 234 (452)
T 3e4b_A 156 TYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEK 234 (452)
T ss_dssp CGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHH
T ss_pred CcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHH
Confidence 54444433222222111123336677777777777 7777777777777765 33444445566665443 5777
Q ss_pred HHHHHHHHHHhcCCCcCHHHHHHHHHH-H--HhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC-----CHHHH
Q 047932 269 EASRLLDLMIQIGVHPNTFVYNTLMDG-F--CLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTK-----NVEEA 340 (598)
Q Consensus 269 ~a~~~~~~~~~~~~~~~~~~~~~ll~~-~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~A 340 (598)
+|..+|+... .| +...+..+..+ + ...+++++|...|++..+.| +...+..+...|. .| ++++|
T Consensus 235 ~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A 306 (452)
T 3e4b_A 235 TAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAA 306 (452)
T ss_dssp HHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHH
T ss_pred HHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHH
Confidence 7777777766 32 45555555555 3 34667777777777777665 5556666666665 34 67777
Q ss_pred HHHHHHHccCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHH----cCCHHHHHH
Q 047932 341 LNLYRKMLPKGIRPTVVTYSTLFLGLFE----VHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCK----NGFVLEALE 412 (598)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~ 412 (598)
+..|++.. . -+...+..+...|.. ..++++|..+|.+..+.|. ......+...|.. ..+..+|..
T Consensus 307 ~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~ 379 (452)
T 3e4b_A 307 EAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAYV 379 (452)
T ss_dssp HHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHHH
T ss_pred HHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHHH
Confidence 77777666 2 244555555555544 2366666666666665542 2233344444432 235666666
Q ss_pred HHHHHhhCC
Q 047932 413 LFCAIGNSK 421 (598)
Q Consensus 413 ~~~~~~~~~ 421 (598)
+|+...+.|
T Consensus 380 ~~~~A~~~g 388 (452)
T 3e4b_A 380 FSQLAKAQD 388 (452)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHHHCC
Confidence 666665554
No 36
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.70 E-value=4.5e-15 Score=147.60 Aligned_cols=352 Identities=11% Similarity=0.003 Sum_probs=212.0
Q ss_pred hhHHHHHHHHHhcCCh---hHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcC-----CHHHHHHHHHHHhhCCC
Q 047932 141 FTYNTLINGLCRTGHT---IVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEG-----FVDKAMELFLQMKDENI 212 (598)
Q Consensus 141 ~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-----~~~~A~~~~~~~~~~~~ 212 (598)
.++..|...|...|+. ++|...|++.... ++..+..+...+...+ ++++|+..|++..+.|.
T Consensus 36 ~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----------~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~ 105 (452)
T 3e4b_A 36 EAQVGLADIQVGTRDPAQIKQAEATYRAAADT----------SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGE 105 (452)
T ss_dssp TGGGTCC--------------------------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----------CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 3444555666666766 7777777777642 4555666666455544 67788888888777543
Q ss_pred CCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcCHHHH
Q 047932 213 NPNVVTYNSLIHCFSHADDW---NEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVY 289 (598)
Q Consensus 213 ~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 289 (598)
. ..+..|...|...+.. ..+.+.+......| +......+...|...+.++++......+.+.-...+...+
T Consensus 106 ~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~ 179 (452)
T 3e4b_A 106 G---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICY 179 (452)
T ss_dssp S---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHH
T ss_pred H---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHH
Confidence 2 3566666666655433 33444555544443 3445666777777777554444433222222112234477
Q ss_pred HHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc----CCHHHHHHHHHHHccCCCCCCHHHHHHH
Q 047932 290 NTLMDGFCLTG---RVNHAKELFVSMESNGCMHDVVSYTTLINGYCKT----KNVEEALNLYRKMLPKGIRPTVVTYSTL 362 (598)
Q Consensus 290 ~~ll~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~A~~~~~~~~~~~~~~~~~~~~~l 362 (598)
..+..+|...| +.++|+..|+...+.| +++...+..+...|... +++++|+..|++.. . -+...+..+
T Consensus 180 ~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~---g~~~a~~~L 254 (452)
T 3e4b_A 180 VELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-P---GYPASWVSL 254 (452)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-G---GSTHHHHHH
T ss_pred HHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-C---CCHHHHHHH
Confidence 77888888888 8888888888888876 44555556666666554 68889999988887 3 245556666
Q ss_pred HHH-H--HhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 047932 363 FLG-L--FEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNG-----FVLEALELFCAIGNSKYELDIISYSCLID 434 (598)
Q Consensus 363 ~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 434 (598)
... + ...+++++|..+|++..+.| +...+..+...|. .| ++++|..+|++.. .+ +...+..|..
T Consensus 255 g~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g---~~~A~~~Lg~ 326 (452)
T 3e4b_A 255 AQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GR---EVAADYYLGQ 326 (452)
T ss_dssp HHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TT---CHHHHHHHHH
T ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CC---CHHHHHHHHH
Confidence 665 3 45788999999999888766 5667777777776 55 8999999998887 43 6677777777
Q ss_pred HHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 047932 435 GLCK----IGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCN----DGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGF 506 (598)
Q Consensus 435 ~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 506 (598)
.|.. ..++++|...|++..+.|. ......|...|.. ..+..+|...|+...+.| .++.......+...
T Consensus 327 ~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g-~~~a~~~l~~l~~~ 402 (452)
T 3e4b_A 327 IYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD-TPEANDLATQLEAP 402 (452)
T ss_dssp HHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC-CHHHHHHHHHHHTT
T ss_pred HHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHh
Confidence 7766 3489999999999888653 3445566766664 458899999999988877 33333333333333
Q ss_pred HhcCCccccchhHHHHHHHhc
Q 047932 507 IRNNETSKSSRGKLMSQMSSC 527 (598)
Q Consensus 507 ~~~g~~~~A~~~~~~~~~~~~ 527 (598)
...++..+|.+ +.++..+.
T Consensus 403 ~~~~~~~~a~~--~~~~~~~~ 421 (452)
T 3e4b_A 403 LTPAQRAEGQR--LVQQELAA 421 (452)
T ss_dssp CCHHHHHHHHH--HHHHHHHH
T ss_pred CCHHHHHHHHH--HHHHHHHh
Confidence 33445566666 66666544
No 37
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.69 E-value=3.6e-15 Score=132.57 Aligned_cols=199 Identities=10% Similarity=-0.000 Sum_probs=129.6
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHH
Q 047932 319 HDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFI 398 (598)
Q Consensus 319 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 398 (598)
++...+..+...+...|++++|+..|++.....+. +...+..+...+...|++++|...++++.+.. +.+...+..+.
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQ-DPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 44555566666666666666666666666655332 45556666666666666666666666666543 34455666666
Q ss_pred HHHHHc-----------CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 047932 399 DGLCKN-----------GFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIM 467 (598)
Q Consensus 399 ~~~~~~-----------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 467 (598)
.++... |++++|+..|+++.+.. +.+...+..+..++...|++++|+..|++..+.. .+...+..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~l 157 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHH
Confidence 666666 88888888888887654 3367778888888888888888888888887765 567778888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccccchhHHHHHHH
Q 047932 468 IHGLCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFIRNNETSKSSRGKLMSQMS 525 (598)
Q Consensus 468 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 525 (598)
..++...|++++|+..|+++++.. |.+...+..+..++...|++++|.+ .+++..
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~--~~~~~~ 212 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAAR--AAALEH 212 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC-----------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHH--HHHHHh
Confidence 888888888888888888888764 5567777888888888888888888 777654
No 38
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.68 E-value=1e-14 Score=133.83 Aligned_cols=223 Identities=14% Similarity=0.056 Sum_probs=133.9
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CC----hhhHHHH
Q 047932 254 FSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTLMDGFCLTGRVNHAKELFVSMESNGCM--HD----VVSYTTL 327 (598)
Q Consensus 254 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~--~~----~~~~~~l 327 (598)
+..+...+...|++++|...++++++.. .+...+..+..++...|++++|...++.+.+.... ++ ...+..+
T Consensus 8 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l 85 (258)
T 3uq3_A 8 EKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARI 85 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHH
Confidence 3344444444444444444444444443 34444444444445555555555554444432100 01 3455555
Q ss_pred HHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCH
Q 047932 328 INGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFV 407 (598)
Q Consensus 328 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 407 (598)
...+...|++++|...++++.... |+. ..+...|++++|...++.+.... +.+...+..+...+...|++
T Consensus 86 ~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 155 (258)
T 3uq3_A 86 GNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSDW 155 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcCH
Confidence 556666666666666666655532 222 23445566677777777766653 33456667777777777777
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047932 408 LEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDM 487 (598)
Q Consensus 408 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 487 (598)
++|...|+++.+.. +.+..++..+..++...|++++|...++++.+.. +.+...+..+..++...|++++|...++++
T Consensus 156 ~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 233 (258)
T 3uq3_A 156 PNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDAA 233 (258)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 77777777777654 3466777777788888888888888888777653 234667777777888888888888888777
Q ss_pred HHC
Q 047932 488 EAK 490 (598)
Q Consensus 488 ~~~ 490 (598)
.+.
T Consensus 234 ~~~ 236 (258)
T 3uq3_A 234 RTK 236 (258)
T ss_dssp HHH
T ss_pred HHh
Confidence 653
No 39
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.68 E-value=5.6e-15 Score=131.38 Aligned_cols=200 Identities=15% Similarity=0.046 Sum_probs=141.9
Q ss_pred CCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH
Q 047932 137 EPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNV 216 (598)
Q Consensus 137 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 216 (598)
+++...+..+...+.+.|++++|+..|++..+.+ |.+...+..+...+.+.|++++|+..|++..+... .+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~ 73 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-------PQDPEALYWLARTQLKLGLVNPALENGKTLVARTP-RYL 73 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-------SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcH
Confidence 3466677888888888888888888888888875 56778888888888888888888888888887643 366
Q ss_pred HHHHHHHHHHHhc-----------CCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcC
Q 047932 217 VTYNSLIHCFSHA-----------DDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPN 285 (598)
Q Consensus 217 ~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 285 (598)
..+..+..++... |++++|+..|++.++.. +.+...+..+..++...|++++|+..++++++.. .+
T Consensus 74 ~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~ 150 (217)
T 2pl2_A 74 GGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DT 150 (217)
T ss_dssp HHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CC
T ss_pred HHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cc
Confidence 7788888888888 88888888888877753 3355677777778888888888888888887776 56
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHc
Q 047932 286 TFVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKML 348 (598)
Q Consensus 286 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 348 (598)
...+..+..++...|++++|...|+...+.. |.+...+..+...+...|++++|+..+++..
T Consensus 151 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 151 PEIRSALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 7777777777888888888888888777653 4466667777777777777777777776654
No 40
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.68 E-value=7.3e-15 Score=136.11 Aligned_cols=247 Identities=12% Similarity=0.089 Sum_probs=160.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC--cCHHHHHHHHHHH
Q 047932 324 YTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFEVHQVEHALKLFDEMQHNDVA--ADTYIYNTFIDGL 401 (598)
Q Consensus 324 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~ 401 (598)
+......+...|++++|+..++++.+..+. +...+..+..++...|++++|...++++.+.... .....+..+...+
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 344455555666666666666665554322 3335555555666666666666666666552211 1233466677777
Q ss_pred HHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 047932 402 CKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAH 481 (598)
Q Consensus 402 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 481 (598)
...|++++|+..|+++.+.. +.+..++..+..+|...|++++|+..+++..+.. +.+...+..+...+...+++++|+
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 162 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKAD 162 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777776653 3356677788888888888888888888877652 234566666663444456888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---ccccchhHHHHHHHhcccCCCCCCh------HHHHH---HHHHhCCC
Q 047932 482 DLFLDMEAKGVEPDCVIFNTIMLGFIRNNE---TSKSSRGKLMSQMSSCWSMCFQPKT------LICSI---SIMLQKDM 549 (598)
Q Consensus 482 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~p~~------~~~~~---~~~~~~~~ 549 (598)
+.|+++++.. +.+...+..+..++...|+ +++|.. .++++.+.. .-.|+. ..+.. .+...|+.
T Consensus 163 ~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~--~~~~a~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 237 (272)
T 3u4t_A 163 SSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKP--YYEKLIEVC--APGGAKYKDELIEANEYIAYYYTINRDK 237 (272)
T ss_dssp HHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHH--HHHHHHHHH--GGGGGGGHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHH--HHHHHHHHH--hcccccchHHHHHHHHHHHHHHHHcCCH
Confidence 8888888764 4457777778888888887 788888 888887651 122332 11211 45567899
Q ss_pred CCChhhHHHhhhcCccccchhhHhhhhCC
Q 047932 550 SPGDTMFSTALLMDPDCSCDLESLIHNTD 578 (598)
Q Consensus 550 ~~a~~~~~~~l~~~P~~~~~~~~l~~~~~ 578 (598)
++|...++++++++|+|+.+...+-....
T Consensus 238 ~~A~~~~~~al~~~p~~~~a~~~l~~~~~ 266 (272)
T 3u4t_A 238 VKADAAWKNILALDPTNKKAIDGLKMKLE 266 (272)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHC----
T ss_pred HHHHHHHHHHHhcCccHHHHHHHhhhhhc
Confidence 99999999999999999988877754433
No 41
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.67 E-value=2.1e-14 Score=131.69 Aligned_cols=229 Identities=12% Similarity=0.057 Sum_probs=123.6
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHhhHHHHH
Q 047932 181 TVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVH--PNVVTFSVIV 258 (598)
Q Consensus 181 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~ 258 (598)
...+..+...+...|++++|...|+++.+.. .+...+..+..++...|++++|.+.+++..+.... ++..
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~------ 76 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYK------ 76 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHH------
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchH------
Confidence 3445555555555555555555555555543 34555555555555555555555555555442110 0100
Q ss_pred HHHHhCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHH
Q 047932 259 DELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVE 338 (598)
Q Consensus 259 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 338 (598)
....++..+..++...|++++|...++++.... |+ ...+...|+++
T Consensus 77 -------------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~-------~~~~~~~~~~~ 122 (258)
T 3uq3_A 77 -------------------------VISKSFARIGNAYHKLGDLKKTIEYYQKSLTEH--RT-------ADILTKLRNAE 122 (258)
T ss_dssp -------------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CC-------HHHHHHHHHHH
T ss_pred -------------------------HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC--ch-------hHHHHHHhHHH
Confidence 002344444444444444444444444444431 12 12234445555
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 047932 339 EALNLYRKMLPKGIRPTVVTYSTLFLGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIG 418 (598)
Q Consensus 339 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 418 (598)
+|...++++..... .+...+..+...+...|++++|...++++.+.. +.+...+..+..++...|++++|...++++.
T Consensus 123 ~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al 200 (258)
T 3uq3_A 123 KELKKAEAEAYVNP-EKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAI 200 (258)
T ss_dssp HHHHHHHHHHHCCH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCc-chHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 55555555554321 133455555566666666666666666665543 3355666666667777777777777777666
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 047932 419 NSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSR 454 (598)
Q Consensus 419 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 454 (598)
+.. +.+..++..+..++...|++++|...+++..+
T Consensus 201 ~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 201 EKD-PNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 543 33566677777777777777777777777665
No 42
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.67 E-value=2.5e-16 Score=161.41 Aligned_cols=151 Identities=12% Similarity=0.150 Sum_probs=125.9
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHhh---CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHH
Q 047932 180 DTVTYNTIIDGVCKEGFVDKAMELFLQMKD---ENINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSV 256 (598)
Q Consensus 180 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 256 (598)
-..+|++||++||+.|++++|.++|++|.+ .|+.||+.|||+||.+|++.|++++|.++|++|.+.|+.||..||+.
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 467999999999999999999999988764 47899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCH-HHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC------hhhHHHHHH
Q 047932 257 IVDELCKNGKM-EEASRLLDLMIQIGVHPNTFVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHD------VVSYTTLIN 329 (598)
Q Consensus 257 l~~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~ 329 (598)
+|.++++.|+. ++|.++|++|.+.|+.||..+|+.++....+. .+++..+++ ..++.|+ ..+...|..
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~d 280 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLRD 280 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHHH
Confidence 99999999984 78999999999999999999999988655442 334444444 2233332 445556667
Q ss_pred HHHhcC
Q 047932 330 GYCKTK 335 (598)
Q Consensus 330 ~~~~~~ 335 (598)
.|.+.+
T Consensus 281 l~s~d~ 286 (1134)
T 3spa_A 281 VYAKDG 286 (1134)
T ss_dssp HHCCCS
T ss_pred HHccCC
Confidence 776655
No 43
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.67 E-value=2.3e-12 Score=132.33 Aligned_cols=431 Identities=11% Similarity=0.066 Sum_probs=260.3
Q ss_pred ChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhccHHHHHHHHHHHHH
Q 047932 54 TPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCRIMEAAALFTKLRV 133 (598)
Q Consensus 54 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~a~~~~~~~~~ 133 (598)
..++.+..|+..+..+|. +...|..++..+.+.+.++.++.+|++++.. .
T Consensus 47 ~~~d~i~~lE~~l~~np~--d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~--f-------------------------- 96 (679)
T 4e6h_A 47 DESDVIGKLNDMIEEQPT--DIFLYVKLLKHHVSLKQWKQVYETFDKLHDR--F-------------------------- 96 (679)
T ss_dssp CCSCHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--C--------------------------
T ss_pred CCHHHHHHHHHHHHHCcC--CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--C--------------------------
Confidence 345677788999999987 9999999999999999999999999998865 2
Q ss_pred cCCCCCHhhHHHHHHHHHhcCC---hhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCH--------HHHHH
Q 047932 134 FGCEPDVFTYNTLINGLCRTGH---TIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFV--------DKAME 202 (598)
Q Consensus 134 ~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~--------~~A~~ 202 (598)
+.....|...+..-.+.|. ++.+..+|++.+.... .+|++..|...+....+.++. +...+
T Consensus 97 ---P~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~-----~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~ 168 (679)
T 4e6h_A 97 ---PLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKEL-----GNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQ 168 (679)
T ss_dssp ---TTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSS-----CCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHH
T ss_pred ---CCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcC-----CCCCHHHHHHHHHHHHHhcccccccchhHHHHHH
Confidence 2345556666666667777 8888899998887531 137788888777766655543 33447
Q ss_pred HHHHHhh-CCC-CC-CHHHHHHHHHHHH---------hcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh-------
Q 047932 203 LFLQMKD-ENI-NP-NVVTYNSLIHCFS---------HADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCK------- 263 (598)
Q Consensus 203 ~~~~~~~-~~~-~~-~~~~~~~l~~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~------- 263 (598)
+|+.... .|. .+ +...|...+.... ..++++.+..+|++++......-..+|......-..
T Consensus 169 ~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~ 248 (679)
T 4e6h_A 169 AFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTAR 248 (679)
T ss_dssp HHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHH
T ss_pred HHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHH
Confidence 7777654 355 44 3456666665433 234567788888888753111112233222111101
Q ss_pred ------CCCHHHHHHHHHHHHhc--CC----C-----------c-----C---HHHHHHHHHHHHhcC-------CHHHH
Q 047932 264 ------NGKMEEASRLLDLMIQI--GV----H-----------P-----N---TFVYNTLMDGFCLTG-------RVNHA 305 (598)
Q Consensus 264 ------~g~~~~a~~~~~~~~~~--~~----~-----------~-----~---~~~~~~ll~~~~~~g-------~~~~a 305 (598)
..+++.|...+.++... ++ + | + ...|...+..--..+ ..+.+
T Consensus 249 ~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv 328 (679)
T 4e6h_A 249 RHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARM 328 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHH
Confidence 11223334444333211 11 0 0 0 123444443322221 12344
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHH-HHHHHHccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 047932 306 KELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEAL-NLYRKMLPKGIRPTVVTYSTLFLGLFEVHQVEHALKLFDEMQH 384 (598)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 384 (598)
..+|++++.. ++.....|...+..+...|+.++|. ++|++.... ++.+...+...+......|+++.|..+|+.+..
T Consensus 329 ~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~ 406 (679)
T 4e6h_A 329 TYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCID 406 (679)
T ss_dssp HHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 5667776654 2446677777777777777777775 777777654 233555566666667777788888888877765
Q ss_pred CC----------CCc-----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHc-CCH
Q 047932 385 ND----------VAA-----------DTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKI-GKL 442 (598)
Q Consensus 385 ~~----------~~~-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~ 442 (598)
.. .+. ...+|...+....+.|+.+.|..+|.++.+.........|...+..-.+. ++.
T Consensus 407 ~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~ 486 (679)
T 4e6h_A 407 RIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDT 486 (679)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCC
T ss_pred HHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCH
Confidence 31 111 12356666666667777777888887776541122333444333333333 347
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCccccchhHH
Q 047932 443 ETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEP--DCVIFNTIMLGFIRNNETSKSSRGKL 520 (598)
Q Consensus 443 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~ 520 (598)
+.|..+|+..++. .+-+...|..++......|+.+.|..+|++++....++ ....|...+..-.+.|+.+.+.+ +
T Consensus 487 e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~--v 563 (679)
T 4e6h_A 487 KTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRT--L 563 (679)
T ss_dssp HHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHH--H
T ss_pred HHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHH--H
Confidence 7788887777664 33355566677776667777788888887777653211 23566666666667777777777 7
Q ss_pred HHHHHhc
Q 047932 521 MSQMSSC 527 (598)
Q Consensus 521 ~~~~~~~ 527 (598)
.+++.+.
T Consensus 564 ~~R~~~~ 570 (679)
T 4e6h_A 564 EKRFFEK 570 (679)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 7777765
No 44
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.66 E-value=6.6e-15 Score=136.60 Aligned_cols=254 Identities=11% Similarity=-0.039 Sum_probs=185.6
Q ss_pred CCcccccCCChHHHHHHHHHHHHcCCC--CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhccHH
Q 047932 45 SGQGDINLITPNEALCIFDYMLRMHPS--PPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCRIM 122 (598)
Q Consensus 45 ~~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~ 122 (598)
.+..+...|++++|+..|+.++...+. +.++.+|..++..+...|++++|...|+++++..
T Consensus 11 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~----------------- 73 (275)
T 1xnf_A 11 LAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR----------------- 73 (275)
T ss_dssp SCCCCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------
T ss_pred eeeccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-----------------
Confidence 345667789999999999999987432 1367789999999999999999999999888642
Q ss_pred HHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHH
Q 047932 123 EAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAME 202 (598)
Q Consensus 123 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 202 (598)
+.+..++..++..|...|++++|...|+++.+.. +.+..++..+...+.+.|++++|.+
T Consensus 74 --------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-------~~~~~~~~~la~~~~~~g~~~~A~~ 132 (275)
T 1xnf_A 74 --------------PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-------PTYNYAHLNRGIALYYGGRDKLAQD 132 (275)
T ss_dssp --------------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCTHHHHHHHHHHHHTTCHHHHHH
T ss_pred --------------CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-------ccccHHHHHHHHHHHHhccHHHHHH
Confidence 2356788889999999999999999999999875 4568889999999999999999999
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCC
Q 047932 203 LFLQMKDENINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGV 282 (598)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 282 (598)
.|+++.+. .|+.......+..+...|++++|...+++..... +++...+ .++..+...++.++|...++.+.....
T Consensus 133 ~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~ 208 (275)
T 1xnf_A 133 DLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNT 208 (275)
T ss_dssp HHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHH
T ss_pred HHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccc
Confidence 99999875 3444444445555677789999999998877653 3343343 466677788888888888888765421
Q ss_pred C---cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 047932 283 H---PNTFVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLY 344 (598)
Q Consensus 283 ~---~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 344 (598)
. .+..++..+..++...|++++|...|+++.... |+ .+.....++...|++++|++.+
T Consensus 209 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~--~~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 209 SLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN--VH--NFVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CT--TCHHHHHHHHHHHHHHHC----
T ss_pred cccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--ch--hHHHHHHHHHHHHHHHhhHHHH
Confidence 1 014566777777777788888888887777653 21 1223344555666666666554
No 45
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.66 E-value=1.6e-16 Score=162.77 Aligned_cols=151 Identities=14% Similarity=0.216 Sum_probs=123.4
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHh---cCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC
Q 047932 139 DVFTYNTLINGLCRTGHTIVALNLFEEMAN---GNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPN 215 (598)
Q Consensus 139 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 215 (598)
-..+|++||.+||+.|++++|.++|++|.+ .+ +.||..|||+||.+||+.|++++|.++|++|.+.|+.||
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG------~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PD 199 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKR------KLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPD 199 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHH------TTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcC------CCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCc
Confidence 356899999999999999999999988764 34 789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcC------HHH
Q 047932 216 VVTYNSLIHCFSHADD-WNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPN------TFV 288 (598)
Q Consensus 216 ~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~------~~~ 288 (598)
..||++||.++++.|+ .++|.++|++|.+.|+.||..+|+.++..+.+. ..++.++++ .-++.|+ ..+
T Consensus 200 vvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t 274 (1134)
T 3spa_A 200 LLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNT 274 (1134)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCC
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccc
Confidence 9999999999999998 588999999999999999999999888655443 333333333 2233333 334
Q ss_pred HHHHHHHHHhcC
Q 047932 289 YNTLMDGFCLTG 300 (598)
Q Consensus 289 ~~~ll~~~~~~g 300 (598)
...|.+.|.+.+
T Consensus 275 ~~LL~dl~s~d~ 286 (1134)
T 3spa_A 275 SKLLRDVYAKDG 286 (1134)
T ss_dssp CTTTHHHHCCCS
T ss_pred hHHHHHHHccCC
Confidence 445556666544
No 46
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.65 E-value=1.6e-13 Score=127.07 Aligned_cols=222 Identities=10% Similarity=-0.055 Sum_probs=122.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHccCCCCCCHHHHH
Q 047932 285 NTFVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCK----TKNVEEALNLYRKMLPKGIRPTVVTYS 360 (598)
Q Consensus 285 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~ 360 (598)
+..++..+...+...|++++|...|++..+.+ +...+..+...|.. .+++++|+..|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 44455555566666666666666666665532 44555555566666 666666666666655543 445555
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHH----cCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 047932 361 TLFLGLFE----VHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCK----NGFVLEALELFCAIGNSKYELDIISYSCL 432 (598)
Q Consensus 361 ~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 432 (598)
.+...+.. .+++++|...|++..+.+ +...+..+...|.. .+++++|+.+|++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 55555555 566666666666555543 44555555555555 556666666665555543 34445555
Q ss_pred HHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 047932 433 IDGLCK----IGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCN----DGQMDKAHDLFLDMEAKGVEPDCVIFNTIML 504 (598)
Q Consensus 433 ~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 504 (598)
...|.. .+++++|+..+++..+.+ +...+..+...|.. .+++++|+..|++..+.+ +...+..+..
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~ 226 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 226 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 555555 555555555555555532 33445555555555 555555555555555543 2444455555
Q ss_pred HHHh----cCCccccchhHHHHHHHh
Q 047932 505 GFIR----NNETSKSSRGKLMSQMSS 526 (598)
Q Consensus 505 ~~~~----~g~~~~A~~~~~~~~~~~ 526 (598)
+|.. .+++++|.+ ++++..+
T Consensus 227 ~~~~g~~~~~~~~~A~~--~~~~a~~ 250 (273)
T 1ouv_A 227 MQYNGEGVTRNEKQAIE--NFKKGCK 250 (273)
T ss_dssp HHHTTSSSSCCSTTHHH--HHHHHHH
T ss_pred HHHcCCCcccCHHHHHH--HHHHHHH
Confidence 5555 555555555 5555543
No 47
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.65 E-value=6.7e-13 Score=122.84 Aligned_cols=189 Identities=10% Similarity=-0.026 Sum_probs=87.2
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCcCHHHHHH
Q 047932 321 VVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFE----VHQVEHALKLFDEMQHNDVAADTYIYNT 396 (598)
Q Consensus 321 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 396 (598)
...+..+...+...|++++|+..|++..+. .+...+..+...+.. .+++++|...|++..+.+ +...+..
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 79 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHL 79 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 334444444444445555555555444442 123344444444444 445555555555444432 3344444
Q ss_pred HHHHHHH----cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 047932 397 FIDGLCK----NGFVLEALELFCAIGNSKYELDIISYSCLIDGLCK----IGKLETAWELFQSLSRVGLLPNVVTYNIMI 468 (598)
Q Consensus 397 l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 468 (598)
+...+.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|+..|++..+.+ +...+..+.
T Consensus 80 lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg 153 (273)
T 1ouv_A 80 LGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILG 153 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHH
Confidence 4444444 455555555555444432 34444444444444 445555555555444432 233344444
Q ss_pred HHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCccccchhHHHHHHHh
Q 047932 469 HGLCN----DGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFIR----NNETSKSSRGKLMSQMSS 526 (598)
Q Consensus 469 ~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 526 (598)
..|.. .+++++|+..|++..+.+ +...+..+..+|.. .+++++|.. ++++..+
T Consensus 154 ~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~--~~~~a~~ 214 (273)
T 1ouv_A 154 SLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALA--RYSKACE 214 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHH--HHHHHHH
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHH--HHHHHHh
Confidence 44444 445555555555444432 33444444444444 445555555 5544443
No 48
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.64 E-value=4.7e-14 Score=130.59 Aligned_cols=164 Identities=9% Similarity=0.034 Sum_probs=83.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcC--HHHHHHHHHH
Q 047932 218 TYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPN--TFVYNTLMDG 295 (598)
Q Consensus 218 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~ 295 (598)
.+......+...|++++|+..|+++++.. +.+...+..+..++...|++++|+..++.+.+.+..++ ...+..+..+
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 34445555666666666666666666542 22334555566666666666666666666655321111 2235555555
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 047932 296 FCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFEVHQVEHA 375 (598)
Q Consensus 296 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 375 (598)
+...|++++|...|+...+.. +.+...+..+...|...|++++|+..+++...... .+...+..+...+...+++++|
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A 161 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTT-TDPKVFYELGQAYYYNKEYVKA 161 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSC-CCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCC-CcHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666666555542 22444555555555555555555555555554421 1333444443122222344444
Q ss_pred HHHHHHHhh
Q 047932 376 LKLFDEMQH 384 (598)
Q Consensus 376 ~~~~~~~~~ 384 (598)
...|+++.+
T Consensus 162 ~~~~~~a~~ 170 (272)
T 3u4t_A 162 DSSFVKVLE 170 (272)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444444
No 49
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.64 E-value=3.9e-14 Score=136.34 Aligned_cols=150 Identities=13% Similarity=0.094 Sum_probs=71.2
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHH
Q 047932 139 DVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVT 218 (598)
Q Consensus 139 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 218 (598)
+..+|..+..++...|++++|+..|+++++.+ +.+...|..+..++.+.|++++|+..|+++++.... +...
T Consensus 165 ~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ld-------P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a 236 (382)
T 2h6f_A 165 NYQVWHHRRVLVEWLRDPSQELEFIADILNQD-------AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSV 236 (382)
T ss_dssp CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-------ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHH
Confidence 34445555555555555555555555555543 334555555555555555555555555555544322 4445
Q ss_pred HHHHHHHHHh-cCCHHHH-----HHHHHHHHHCCCCCCHhhHHHHHHHHHhCC--CHHHHHHHHHHHHhcCCCcCHHHHH
Q 047932 219 YNSLIHCFSH-ADDWNEA-----KRLFIKMMDQGVHPNVVTFSVIVDELCKNG--KMEEASRLLDLMIQIGVHPNTFVYN 290 (598)
Q Consensus 219 ~~~l~~~~~~-~~~~~~a-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~ 290 (598)
|+.+..++.. .|..++| +..|++.+... +-+...|..+..++...| ++++|++.+..+ +. .+.+...+.
T Consensus 237 ~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~ 313 (382)
T 2h6f_A 237 WNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIA 313 (382)
T ss_dssp HHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHH
T ss_pred HHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHH
Confidence 5555555555 3332444 24444444432 223344444444444444 345555555444 21 122334444
Q ss_pred HHHHHHHhc
Q 047932 291 TLMDGFCLT 299 (598)
Q Consensus 291 ~ll~~~~~~ 299 (598)
.+..+|.+.
T Consensus 314 ~La~~~~~~ 322 (382)
T 2h6f_A 314 FLVDIYEDM 322 (382)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444443
No 50
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.63 E-value=1.1e-13 Score=133.10 Aligned_cols=249 Identities=12% Similarity=0.055 Sum_probs=201.7
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCC-HHHHHHHHHHHhhCCCCCCHHH
Q 047932 140 VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGF-VDKAMELFLQMKDENINPNVVT 218 (598)
Q Consensus 140 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~ 218 (598)
..+|..+..++.+.|++++|+..|++++..+ +.+...|+.+..++...|+ +++|+..|+++...... +...
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-------P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a 168 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-------AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQV 168 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-------ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHH
Confidence 4567888889999999999999999999976 5678899999999999997 99999999999987544 7889
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHh
Q 047932 219 YNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTLMDGFCL 298 (598)
Q Consensus 219 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 298 (598)
|..+..++...|++++|+..|+++++.. +-+...|..+..++...|++++|+..++++++... .+...|+.+..++..
T Consensus 169 ~~~~g~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P-~~~~a~~~lg~~l~~ 246 (382)
T 2h6f_A 169 WHHRRVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV-RNNSVWNQRYFVISN 246 (382)
T ss_dssp HHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHH
Confidence 9999999999999999999999999874 44778899999999999999999999999998753 377889999988888
Q ss_pred -cCCHHHH-----HHHHHHHHHCCCCCChhhHHHHHHHHHhcC--CHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHhcC
Q 047932 299 -TGRVNHA-----KELFVSMESNGCMHDVVSYTTLINGYCKTK--NVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFEVH 370 (598)
Q Consensus 299 -~g~~~~a-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 370 (598)
.|..++| +..+++.+... +.+...|..+...+...| ++++|++.+.++ +.. ..+...+..++..+.+.|
T Consensus 247 l~~~~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~-p~~~~al~~La~~~~~~~ 323 (382)
T 2h6f_A 247 TTGYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS-HSSPYLIAFLVDIYEDML 323 (382)
T ss_dssp TTCSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT-CCCHHHHHHHHHHHHHHH
T ss_pred hcCcchHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC-CCCHHHHHHHHHHHHHHh
Confidence 5665777 47788887764 457778888888888877 688999988887 432 336677788888887763
Q ss_pred ---------CHHHHHHHHHHH-hhCCCCcCHHHHHHHHHHHH
Q 047932 371 ---------QVEHALKLFDEM-QHNDVAADTYIYNTFIDGLC 402 (598)
Q Consensus 371 ---------~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~~ 402 (598)
..++|..+++++ .+.+ +.....|..+...+.
T Consensus 324 ~~~~~~~~~~~~~A~~~~~~l~~~~D-P~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 324 ENQCDNKEDILNKALELCEILAKEKD-TIRKEYWRYIGRSLQ 364 (382)
T ss_dssp HTTCSSHHHHHHHHHHHHHHHHHTTC-GGGHHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHHHHHHHHhC-chhHHHHHHHHHHHH
Confidence 258888888888 5543 344556665555443
No 51
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.63 E-value=6.3e-12 Score=129.08 Aligned_cols=437 Identities=11% Similarity=0.021 Sum_probs=299.3
Q ss_pred HHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCC---HHHHH
Q 047932 125 AALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGF---VDKAM 201 (598)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~ 201 (598)
+..|++.+..+ +-|...|..++..+.+.+.++.+..+|+++.... |.....|...+..-.+.|+ ++.+.
T Consensus 52 i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~f-------P~~~~lW~~Yi~~E~~~~~~~~~~~v~ 123 (679)
T 4e6h_A 52 IGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRF-------PLMANIWCMRLSLEFDKMEELDAAVIE 123 (679)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHTC--CCCHHHHH
T ss_pred HHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHhhCCcchHHHHH
Confidence 33445444444 4588999999999999999999999999999874 6778899999999899999 99999
Q ss_pred HHHHHHhhCC-CCCCHHHHHHHHHHHHhcCCH--------HHHHHHHHHHHH-CCC-CCC-HhhHHHHHHHHH-------
Q 047932 202 ELFLQMKDEN-INPNVVTYNSLIHCFSHADDW--------NEAKRLFIKMMD-QGV-HPN-VVTFSVIVDELC------- 262 (598)
Q Consensus 202 ~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~--------~~a~~~~~~~~~-~~~-~~~-~~~~~~l~~~~~------- 262 (598)
.+|++..... .+|++..|..-+....+.++. +...++|+..+. .|. .++ ...|...+....
T Consensus 124 ~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~ 203 (679)
T 4e6h_A 124 PVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNK 203 (679)
T ss_dssp HHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSH
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCc
Confidence 9999999863 147888888777665554443 345578877665 355 443 457777766443
Q ss_pred --hCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHh-------------cCCHHHHHHHHHHHHHC--C----CCCC-
Q 047932 263 --KNGKMEEASRLLDLMIQIGVHPNTFVYNTLMDGFCL-------------TGRVNHAKELFVSMESN--G----CMHD- 320 (598)
Q Consensus 263 --~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-------------~g~~~~a~~~~~~~~~~--~----~~~~- 320 (598)
..++++.+.++|+.++......-..+|......-.. ..+++.|...+.++... + .+..
T Consensus 204 ~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~ 283 (679)
T 4e6h_A 204 FEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITL 283 (679)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSS
T ss_pred HHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhcccccc
Confidence 234577889999999864322222333322211111 12334455555543221 1 1110
Q ss_pred ------------------hhhHHHHHHHHHhcC-------CHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 047932 321 ------------------VVSYTTLINGYCKTK-------NVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFEVHQVEHA 375 (598)
Q Consensus 321 ------------------~~~~~~l~~~~~~~~-------~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 375 (598)
...|...+..--..+ ..+.+..+|+++.... +-....|...+..+...|+.++|
T Consensus 284 ~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a 362 (679)
T 4e6h_A 284 NQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTV 362 (679)
T ss_dssp TTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTH
T ss_pred ccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHH
Confidence 133444444333322 1244567788887653 33778888888888888999999
Q ss_pred H-HHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCC---------CC------------CHHHHHHHH
Q 047932 376 L-KLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKY---------EL------------DIISYSCLI 433 (598)
Q Consensus 376 ~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---------~~------------~~~~~~~l~ 433 (598)
. .+|++.... ++.+...+...+....+.|++++|..+|+++++... .| ...+|..++
T Consensus 363 ~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~ 441 (679)
T 4e6h_A 363 ITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYM 441 (679)
T ss_dssp HHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHH
Confidence 6 999999875 466777788888889999999999999999875310 13 234688888
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCc
Q 047932 434 DGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCND-GQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFIRNNET 512 (598)
Q Consensus 434 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 512 (598)
....+.|..+.|..+|.++.+.-.......|...+..-.+. ++.+.|.++|+..++. .+.+...|...+......|+.
T Consensus 442 ~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~ 520 (679)
T 4e6h_A 442 NTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEE 520 (679)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCH
Confidence 88889999999999999998751112334444333333344 4589999999999986 466778888888888899999
Q ss_pred cccchhHHHHHHHhcccCCCCC-Ch-HHHHH---HHHHhCCCCCChhhHHHhhhcCccccchhhHhhhhCC
Q 047932 513 SKSSRGKLMSQMSSCWSMCFQP-KT-LICSI---SIMLQKDMSPGDTMFSTALLMDPDCSCDLESLIHNTD 578 (598)
Q Consensus 513 ~~A~~~~~~~~~~~~~~~~~~p-~~-~~~~~---~~~~~~~~~~a~~~~~~~l~~~P~~~~~~~~l~~~~~ 578 (598)
+.|.. +|++++.. ...+ +. ..|.. .-...|+.+.+..+.+++.+..|+++. +..++.++.
T Consensus 521 ~~AR~--lferal~~---~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~-~~~f~~ry~ 585 (679)
T 4e6h_A 521 SQVKS--LFESSIDK---ISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNK-LEEFTNKYK 585 (679)
T ss_dssp HHHHH--HHHHHTTT---SSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCH-HHHHHHHTC
T ss_pred HHHHH--HHHHHHHh---cCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcH-HHHHHHHhc
Confidence 99999 99999966 2111 22 23333 345689999999999999999998754 334444444
No 52
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.62 E-value=4.1e-13 Score=126.59 Aligned_cols=252 Identities=9% Similarity=-0.007 Sum_probs=189.2
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHHH-------hcCCH-------HHHHHHHHHHccC-CCCCCHHHHHHHHHHHH
Q 047932 303 NHAKELFVSMESNGCMHDVVSYTTLINGYC-------KTKNV-------EEALNLYRKMLPK-GIRPTVVTYSTLFLGLF 367 (598)
Q Consensus 303 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~-------~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~ 367 (598)
++|..+|+++.... +.++..|..++..+. ..|++ ++|..+|++.... .+ -+...|..++..+.
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p-~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLK-KNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHH
Confidence 56777777777653 446677777776665 34775 8899999988873 32 25667888888888
Q ss_pred hcCCHHHHHHHHHHHhhCCCCcCHH-HHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH-HcCCHHHH
Q 047932 368 EVHQVEHALKLFDEMQHNDVAADTY-IYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLC-KIGKLETA 445 (598)
Q Consensus 368 ~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A 445 (598)
..|++++|..+|+++++.. +.+.. .|..++..+.+.|++++|..+|+++.+.. +.+...|...+.... ..|++++|
T Consensus 111 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp HTTCHHHHHHHHHHHHTSS-SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred hcCCHHHHHHHHHHHHhcc-ccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHH
Confidence 8999999999999988753 22343 78888888899999999999999998764 345555654444433 36999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCC--CHHHHHHHHHHHHhcCCccccchhHHHH
Q 047932 446 WELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEAKG-VEP--DCVIFNTIMLGFIRNNETSKSSRGKLMS 522 (598)
Q Consensus 446 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 522 (598)
..+|++..+.. +.+...|..++..+.+.|++++|+.+|++++... ++| ....|..++..+.+.|+.++|.. +++
T Consensus 189 ~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~--~~~ 265 (308)
T 2ond_A 189 FKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILK--VEK 265 (308)
T ss_dssp HHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHH--HHH
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHH--HHH
Confidence 99999998752 3367889999999999999999999999999863 455 46788889999999999999999 999
Q ss_pred HHHhcccCCCCCChHH--HHHHHHHhCCCCCChhhHHHhhhcCccccchhhHhhhh
Q 047932 523 QMSSCWSMCFQPKTLI--CSISIMLQKDMSPGDTMFSTALLMDPDCSCDLESLIHN 576 (598)
Q Consensus 523 ~~~~~~~~~~~p~~~~--~~~~~~~~~~~~~a~~~~~~~l~~~P~~~~~~~~l~~~ 576 (598)
++.+. .|+... ....+ ....+++.++|+++..++.|.+.
T Consensus 266 ~a~~~-----~p~~~~~~~~~~~----------~~r~~~l~~~P~~~~~ln~lgY~ 306 (308)
T 2ond_A 266 RRFTA-----FREEYEGKETALL----------VDRYKFMDLYPCSASELKALGYK 306 (308)
T ss_dssp HHHHH-----TTTTTSSCHHHHH----------HTTTCBTTBCSSCHHHHHTTTCC
T ss_pred HHHHH-----cccccccchHHHH----------HHHHHhcccCCCCHHHHHhcCCC
Confidence 99876 344221 11111 22227788999999999988664
No 53
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.61 E-value=3.8e-13 Score=122.91 Aligned_cols=201 Identities=12% Similarity=0.011 Sum_probs=141.9
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHH
Q 047932 140 VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTY 219 (598)
Q Consensus 140 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 219 (598)
...+..++..+...|++++|...|+++.... +.+...+..+...+...|++++|.+.++++..... .+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-------~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~ 108 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-------PSSADAHAALAVVFQTEMEPKLADEEYRKALASDS-RNARVL 108 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-------CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHH
Confidence 4567777888888888888888888887764 45677777888888888888888888888776532 256677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHh
Q 047932 220 NSLIHCFSHADDWNEAKRLFIKMMDQGVHP-NVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTLMDGFCL 298 (598)
Q Consensus 220 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 298 (598)
..+...+...|++++|.+.++++...+..| +...+..+..++...|++++|...++++.+.. +.+...+..+...+..
T Consensus 109 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~ 187 (252)
T 2ho1_A 109 NNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYK 187 (252)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHH
Confidence 777777888888888888887776622233 34566667777777777777777777777653 2345666667777777
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccC
Q 047932 299 TGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPK 350 (598)
Q Consensus 299 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 350 (598)
.|++++|...++.+.+.. +.+...+..+...+...|++++|.+.++++...
T Consensus 188 ~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 188 EREYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp TTCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 777777777777766543 345556666666677777777777777766654
No 54
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.60 E-value=6.6e-13 Score=121.28 Aligned_cols=199 Identities=16% Similarity=0.036 Sum_probs=110.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHHH
Q 047932 288 VYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLF 367 (598)
Q Consensus 288 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 367 (598)
.+..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|.+.++++...... +...+..+...+.
T Consensus 39 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~ 116 (252)
T 2ho1_A 39 AYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR-NARVLNNYGGFLY 116 (252)
T ss_dssp HHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHHHH
Confidence 34444445555555555555555554432 224444555555555555555555555555443221 4445555555555
Q ss_pred hcCCHHHHHHHHHHHhhCCC-CcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 047932 368 EVHQVEHALKLFDEMQHNDV-AADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAW 446 (598)
Q Consensus 368 ~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 446 (598)
..|++++|..+++++...+. +.+...+..+...+...|++++|...++++.+.. +.+...+..++..+...|++++|.
T Consensus 117 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~ 195 (252)
T 2ho1_A 117 EQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPAR 195 (252)
T ss_dssp HTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHH
Confidence 55666666666655554211 2234455556666666666666666666665443 234556666666666666666666
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047932 447 ELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEAK 490 (598)
Q Consensus 447 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 490 (598)
..++++.+.. +.+...+..+...+...|++++|.++++++.+.
T Consensus 196 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 196 QYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 6666666542 234555666666666667777777766666654
No 55
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.59 E-value=9.8e-14 Score=125.98 Aligned_cols=203 Identities=16% Similarity=0.166 Sum_probs=145.2
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHH
Q 047932 138 PDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVV 217 (598)
Q Consensus 138 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 217 (598)
.....|..++..+...|++++|...|+++.+.. +.+...+..+...+...|++++|.+.++++.... +.+..
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~ 92 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-------KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAAT 92 (243)
T ss_dssp ---------------------CCTTHHHHHTTC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchH
Confidence 345667788888889999999999999988865 5568888888888999999999999998888753 23677
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHH
Q 047932 218 TYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTLMDGFC 297 (598)
Q Consensus 218 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 297 (598)
.+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+.
T Consensus 93 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 170 (243)
T 2q7f_A 93 AYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLA 170 (243)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHH
Confidence 88888888888999999999998888763 3466777888888888888888888888887764 336677778888888
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCC
Q 047932 298 LTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKG 351 (598)
Q Consensus 298 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 351 (598)
..|++++|...++.+.+.. +.+...+..+...|...|++++|...++++....
T Consensus 171 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 171 NEGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 8888888888888877664 3456777778888888888888888888877653
No 56
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.59 E-value=9.3e-14 Score=126.15 Aligned_cols=209 Identities=14% Similarity=0.073 Sum_probs=113.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHHH
Q 047932 288 VYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLF 367 (598)
Q Consensus 288 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 367 (598)
.+..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|+..++++..... .+...+..+...+.
T Consensus 25 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~ 102 (243)
T 2q7f_A 25 TGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDS-SAATAYYGAGNVYV 102 (243)
T ss_dssp -----------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-cchHHHHHHHHHHH
Confidence 34444455555555555555555555432 33455555555555566666666666665554422 24555555566666
Q ss_pred hcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 047932 368 EVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWE 447 (598)
Q Consensus 368 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 447 (598)
..|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..++..+...|++++|..
T Consensus 103 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 180 (243)
T 2q7f_A 103 VKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEALS 180 (243)
T ss_dssp HTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHH
T ss_pred HhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHH
Confidence 6666666666666665543 3345556666666666667777776666666543 3356666666777777777777777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 047932 448 LFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTI 502 (598)
Q Consensus 448 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 502 (598)
.++++.+.. +.+..++..+..++...|++++|...++++.+.. +.+...+..+
T Consensus 181 ~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~ 233 (243)
T 2q7f_A 181 QFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ-PDHMLALHAK 233 (243)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC-cchHHHHHHH
Confidence 777766542 2245566667777777777777777777776643 3344444433
No 57
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.59 E-value=9.1e-14 Score=128.87 Aligned_cols=130 Identities=12% Similarity=-0.050 Sum_probs=65.6
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHH
Q 047932 140 VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTY 219 (598)
Q Consensus 140 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 219 (598)
..++..++..+...|++++|...|+++...+ +.+..+|..+...+...|++++|.+.|+++..... .+..++
T Consensus 43 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~ 114 (275)
T 1xnf_A 43 AQLLYERGVLYDSLGLRALARNDFSQALAIR-------PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDP-TYNYAH 114 (275)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-------CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCc-cccHHH
Confidence 3445555555666666666666666655543 33455555555555555666666655555555321 234455
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 047932 220 NSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQ 279 (598)
Q Consensus 220 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 279 (598)
..+..+|...|++++|...|+++.+. .|+.......+..+...|++++|...++....
T Consensus 115 ~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 115 LNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 55555555555555555555555543 22222222222333344455555555544443
No 58
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.59 E-value=1.1e-12 Score=117.26 Aligned_cols=201 Identities=10% Similarity=-0.047 Sum_probs=110.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHH
Q 047932 287 FVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGL 366 (598)
Q Consensus 287 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 366 (598)
..+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|.+.++++..... .+..++..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~ 86 (225)
T 2vq2_A 9 NIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKP-DSAEINNNYGWFL 86 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CChHHHHHHHHHH
Confidence 344444445555555555555555544432 22344455555555555555555555555544322 1444555555555
Q ss_pred Hhc-CCHHHHHHHHHHHhhCCC-CcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 047932 367 FEV-HQVEHALKLFDEMQHNDV-AADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLET 444 (598)
Q Consensus 367 ~~~-~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 444 (598)
... |++++|...++++.+.+. +.+...+..+..++...|++++|...++++.+.. +.+...+..++.++...|++++
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 165 (225)
T 2vq2_A 87 CGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGD 165 (225)
T ss_dssp HTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHH
Confidence 555 666666666655555211 2224555556666666666666666666665543 2345666666666666777777
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047932 445 AWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEAK 490 (598)
Q Consensus 445 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 490 (598)
|...++++.+.....+...+..+...+...|+.+.|..+++.+.+.
T Consensus 166 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 166 ADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 7777766665422134555555556666667777777776666543
No 59
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.59 E-value=7.5e-13 Score=118.45 Aligned_cols=203 Identities=13% Similarity=0.003 Sum_probs=131.7
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHH
Q 047932 139 DVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVT 218 (598)
Q Consensus 139 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 218 (598)
+...+..++..+...|++++|...|+++.+.. +.+...+..+...+...|++++|.+.++++.... +.+..+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~ 78 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-------PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEI 78 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-------ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHH
Confidence 44566677777777777777777777777654 4456677777777777777777777777776643 225666
Q ss_pred HHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCCC-HhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHH
Q 047932 219 YNSLIHCFSHA-DDWNEAKRLFIKMMDQGVHPN-VVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTLMDGF 296 (598)
Q Consensus 219 ~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 296 (598)
+..+...+... |++++|...++++.+.+..|+ ...+..+..++...|++++|...++++.+.. +.+...+..+..++
T Consensus 79 ~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 157 (225)
T 2vq2_A 79 NNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTK 157 (225)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHH
Confidence 77777777777 777777777777766222222 4456666667777777777777777766653 22455666666666
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccC
Q 047932 297 CLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPK 350 (598)
Q Consensus 297 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 350 (598)
...|++++|...++.+.+.....+...+..+...+...|+.+++..+++.+...
T Consensus 158 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 158 MLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 667777777777666665431134555555556666666666666666665543
No 60
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.57 E-value=9.2e-14 Score=136.91 Aligned_cols=307 Identities=13% Similarity=0.069 Sum_probs=181.3
Q ss_pred CCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-
Q 047932 179 PDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPN----VVTYNSLIHCFSHADDWNEAKRLFIKMMDQ----GVHP- 249 (598)
Q Consensus 179 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~- 249 (598)
.....+......+...|++++|...|+++...+.. + ...+..+...+...|++++|...+++.... +..|
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 34445556666667777777777777766664221 2 235556666666667777776666665432 1111
Q ss_pred CHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHH
Q 047932 250 NVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVH-PNTFVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLI 328 (598)
Q Consensus 250 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 328 (598)
...++..+...+...|++++|...++++.+.... .+. .....++..+.
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------------------------------~~~~~~~~~l~ 134 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDK-------------------------------VGEARALYNLG 134 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH-------------------------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccc-------------------------------cchHHHHHHHH
Confidence 1234455555566666666666666655543100 010 00122334444
Q ss_pred HHHHhcCC--------------------HHHHHHHHHHHccC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 047932 329 NGYCKTKN--------------------VEEALNLYRKMLPK----GIRP-TVVTYSTLFLGLFEVHQVEHALKLFDEMQ 383 (598)
Q Consensus 329 ~~~~~~~~--------------------~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 383 (598)
..|...|+ +++|...+.+.... +..+ ...++..+...+...|++++|...++++.
T Consensus 135 ~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 214 (406)
T 3sf4_A 135 NVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRL 214 (406)
T ss_dssp HHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHH
T ss_pred HHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 44444444 55555555443321 1011 12455666667777777777777777665
Q ss_pred hC----CC-CcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCC-CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 047932 384 HN----DV-AADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYE-LD----IISYSCLIDGLCKIGKLETAWELFQSLS 453 (598)
Q Consensus 384 ~~----~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 453 (598)
+. +. .....++..+...+...|++++|...++++...... .+ ..++..+...|...|++++|...+++..
T Consensus 215 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 294 (406)
T 3sf4_A 215 LIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 294 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 42 10 111336777788888888888888888877632100 11 4577888889999999999999998876
Q ss_pred hCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHhcCCccccch
Q 047932 454 RVGL-LPN----VVTYNIMIHGLCNDGQMDKAHDLFLDMEAK----GVE-PDCVIFNTIMLGFIRNNETSKSSR 517 (598)
Q Consensus 454 ~~~~-~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~-p~~~~~~~l~~~~~~~g~~~~A~~ 517 (598)
+... ..+ ..++..+...|...|++++|...+++..+. +-. ....++..+..++...|+...+..
T Consensus 295 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~ 368 (406)
T 3sf4_A 295 AIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYSTNN 368 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSCC--
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHHHHH
Confidence 5211 111 456778888999999999999999988753 211 124567778888888887755444
No 61
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.55 E-value=1.4e-13 Score=135.71 Aligned_cols=303 Identities=13% Similarity=0.069 Sum_probs=181.7
Q ss_pred CCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCC----HhHHHHHHHHHHhcCCHHHHHHHHHHHhhC--
Q 047932 137 EPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPD----TVTYNTIIDGVCKEGFVDKAMELFLQMKDE-- 210 (598)
Q Consensus 137 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-- 210 (598)
......+......+...|++++|...|+++.... +.+ ...+..+...+...|++++|...++++...
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 78 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-------TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLAR 78 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-------cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 3456677888999999999999999999999865 333 357888999999999999999999987543
Q ss_pred --CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HhhHHHHHHHHHhCCC----------------
Q 047932 211 --NINP-NVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVH-PN----VVTFSVIVDELCKNGK---------------- 266 (598)
Q Consensus 211 --~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~---------------- 266 (598)
+..| ...++..+...|...|++++|...+++..+.... ++ ..++..+...+...|+
T Consensus 79 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~ 158 (406)
T 3sf4_A 79 TIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEE 158 (406)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHH
T ss_pred hccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhh
Confidence 1111 2457888899999999999999999988753110 11 3367777788888888
Q ss_pred ----HHHHHHHHHHHHhc----CCC-cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CC----ChhhHHHHHHHHH
Q 047932 267 ----MEEASRLLDLMIQI----GVH-PNTFVYNTLMDGFCLTGRVNHAKELFVSMESNGC-MH----DVVSYTTLINGYC 332 (598)
Q Consensus 267 ----~~~a~~~~~~~~~~----~~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~----~~~~~~~l~~~~~ 332 (598)
+++|...+++.... +.. ....++..+...+...|++++|...+++..+... .+ ...++..+...|.
T Consensus 159 a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~ 238 (406)
T 3sf4_A 159 VRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYI 238 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Confidence 77777777766542 101 1123455555666666666666666665543210 00 1123444444555
Q ss_pred hcCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCc-CHHHHHHHHHHHHHcCCHHHHH
Q 047932 333 KTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFEVHQVEHALKLFDEMQHNDVAA-DTYIYNTFIDGLCKNGFVLEAL 411 (598)
Q Consensus 333 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~ 411 (598)
..|++++|...+++...... ..+..+ ...++..+...+...|++++|.
T Consensus 239 ~~g~~~~A~~~~~~al~~~~-------------------------------~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 287 (406)
T 3sf4_A 239 FLGEFETASEYYKKTLLLAR-------------------------------QLKDRAVEAQSCYSLGNTYTLLQDYEKAI 287 (406)
T ss_dssp HTTCHHHHHHHHHHHHHHHH-------------------------------HTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HcCChHHHHHHHHHHHHHHH-------------------------------hCcCchHHHHHHHHHHHHHHHhCcHHHHH
Confidence 55555555555544432100 000000 1334455555556666666666
Q ss_pred HHHHHHhhCCC-----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCH
Q 047932 412 ELFCAIGNSKY-----ELDIISYSCLIDGLCKIGKLETAWELFQSLSRV----GLLP-NVVTYNIMIHGLCNDGQM 477 (598)
Q Consensus 412 ~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~ 477 (598)
..++++..... .....++..+..+|...|++++|...+++..+. +..+ ...++..+...+...|+.
T Consensus 288 ~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 288 DYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 66555442110 001345566666666777777777766665441 1111 133455566666665554
No 62
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.54 E-value=2.2e-13 Score=134.51 Aligned_cols=276 Identities=13% Similarity=0.065 Sum_probs=160.6
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCH----hHHHHHHHHHHhcCCHHHHHHHHHHHhhC----C-
Q 047932 141 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDT----VTYNTIIDGVCKEGFVDKAMELFLQMKDE----N- 211 (598)
Q Consensus 141 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~- 211 (598)
..+..+...+...|++++|+..|+++.+.. +.+. ..+..+...|...|++++|...++++... +
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-------~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 121 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAG-------TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMND 121 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-------ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccC
Confidence 345567788889999999999999998865 3333 46788888999999999999998887653 1
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----CCCCHhhHHHHHHHHHhCCC-----------------HHH
Q 047932 212 INPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQG-----VHPNVVTFSVIVDELCKNGK-----------------MEE 269 (598)
Q Consensus 212 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~-----------------~~~ 269 (598)
.+....++..+...|...|++++|...+++..+.. ......++..+...|...|+ +++
T Consensus 122 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~ 201 (411)
T 4a1s_A 122 RLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTR 201 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHH
Confidence 11234567778888888888888888888776531 01123356666777777777 666
Q ss_pred HHHHHHHHHhc----CC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----hhhHHHHHHHHHhcCCHHH
Q 047932 270 ASRLLDLMIQI----GV-HPNTFVYNTLMDGFCLTGRVNHAKELFVSMESNGCM-HD----VVSYTTLINGYCKTKNVEE 339 (598)
Q Consensus 270 a~~~~~~~~~~----~~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~ 339 (598)
|...+++..+. +. .....++..+...+...|++++|...+++..+.... .+ ...+..+...|...|++++
T Consensus 202 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 281 (411)
T 4a1s_A 202 AVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFED 281 (411)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHH
Confidence 66666665432 10 111224455555555666666666655554432100 00 1134444444444555555
Q ss_pred HHHHHHHHccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC-CcCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 047932 340 ALNLYRKMLPKGIRPTVVTYSTLFLGLFEVHQVEHALKLFDEMQHNDV-AADTYIYNTFIDGLCKNGFVLEALELFCAIG 418 (598)
Q Consensus 340 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 418 (598)
|...+++...... ..+. .....++..+...+...|++++|...++++.
T Consensus 282 A~~~~~~al~~~~-------------------------------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 330 (411)
T 4a1s_A 282 AAEHYKRTLALAV-------------------------------ELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHL 330 (411)
T ss_dssp HHHHHHHHHHHHH-------------------------------HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-------------------------------HcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5444444332100 0000 0113344555555566666666666665544
Q ss_pred hCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 047932 419 NSK-----YELDIISYSCLIDGLCKIGKLETAWELFQSLSR 454 (598)
Q Consensus 419 ~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 454 (598)
... ......++..+..+|...|++++|...+++..+
T Consensus 331 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 331 AIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 210 011134556666677777777777777777665
No 63
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.53 E-value=5.6e-12 Score=118.74 Aligned_cols=219 Identities=9% Similarity=0.060 Sum_probs=163.6
Q ss_pred HHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHh-------cCCh-------hHHHHHHHHHHhCCCCCCHHhHHHHHhccH
Q 047932 56 NEALCIFDYMLRMHPSPPPVSSFNILFGCLAK-------NKHY-------DTVLSLFKRLNSTGLFPDLYTHSILINCRI 121 (598)
Q Consensus 56 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~-------~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~ 121 (598)
++|...|++++...|. ++.+|..++..+.. .|++ ++|+.+|++++..
T Consensus 33 ~~a~~~~~~al~~~p~--~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~----------------- 93 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGH--HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST----------------- 93 (308)
T ss_dssp HHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT-----------------
T ss_pred HHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHH-----------------
Confidence 7899999999999887 99999999988864 4665 5666666665541
Q ss_pred HHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHh-HHHHHHHHHHhcCCHHHH
Q 047932 122 MEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTV-TYNTIIDGVCKEGFVDKA 200 (598)
Q Consensus 122 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A 200 (598)
.. +.+...|..++..+.+.|++++|..+|+++.+.. +.+.. .|..++..+.+.|++++|
T Consensus 94 ------------~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~~~~~~~~~~~~~~~A 153 (308)
T 2ond_A 94 ------------LL-KKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE-------DIDPTLVYIQYMKFARRAEGIKSG 153 (308)
T ss_dssp ------------TT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSS-------SSCTHHHHHHHHHHHHHHHCHHHH
T ss_pred ------------hC-cccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc-------ccCccHHHHHHHHHHHHhcCHHHH
Confidence 11 2355678889999999999999999999999854 33344 788899999999999999
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 047932 201 MELFLQMKDENINPNVVTYNSLIHCFS-HADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQ 279 (598)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 279 (598)
..+|++..+.+. .+...|...+.... ..|++++|..+|++.++.. +.+...|..++..+.+.|++++|..+|++.+.
T Consensus 154 ~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~ 231 (308)
T 2ond_A 154 RMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLT 231 (308)
T ss_dssp HHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 999999987632 34555544433322 3688888888888887752 33566777788888888888888888888887
Q ss_pred cC-CCc--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047932 280 IG-VHP--NTFVYNTLMDGFCLTGRVNHAKELFVSMESN 315 (598)
Q Consensus 280 ~~-~~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 315 (598)
.. +.| ....|..++....+.|+.+.|..+++++.+.
T Consensus 232 ~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 232 SGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp SSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 52 343 3556777777777788888888888877765
No 64
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.53 E-value=2.7e-13 Score=133.82 Aligned_cols=277 Identities=13% Similarity=0.088 Sum_probs=139.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCCHh
Q 047932 182 VTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNV----VTYNSLIHCFSHADDWNEAKRLFIKMMDQ----GV-HPNVV 252 (598)
Q Consensus 182 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~ 252 (598)
..+..+...+...|++++|...|+++.+.+.. +. ..+..+...|...|++++|...+++..+. +. +....
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 33444555666666666666666666654221 22 34555666666666666666666655432 00 11223
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCChhhHHHHHHHH
Q 047932 253 TFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTLMDGFCLTGRVNHAKELFVSMESNG-CMHDVVSYTTLINGY 331 (598)
Q Consensus 253 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~ 331 (598)
++..+...|...|++++|...++++.+... ..+ .+....++..+...|
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-------------------------------~~~~~~~~~~~~~~l~~~~ 176 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLAR-------------------------------QLGDRLSEGRALYNLGNVY 176 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-------------------------------HHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHH-------------------------------HhhchHHHHHHHHHHHHHH
Confidence 444455555555555555555555443200 000 011122333444444
Q ss_pred HhcCC-----------------HHHHHHHHHHHccC----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC--
Q 047932 332 CKTKN-----------------VEEALNLYRKMLPK----GI-RPTVVTYSTLFLGLFEVHQVEHALKLFDEMQHNDV-- 387 (598)
Q Consensus 332 ~~~~~-----------------~~~A~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-- 387 (598)
...|+ +++|+..+.+.... +. .....++..+...+...|++++|...+++..+...
T Consensus 177 ~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 256 (411)
T 4a1s_A 177 HAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREF 256 (411)
T ss_dssp HHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhc
Confidence 44444 44444444433221 00 01123444555555666666666666655543210
Q ss_pred ---CcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCC-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----
Q 047932 388 ---AADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYE-----LDIISYSCLIDGLCKIGKLETAWELFQSLSRV---- 455 (598)
Q Consensus 388 ---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---- 455 (598)
......+..+...+...|++++|...++++...... ....++..+...|...|++++|...+++..+.
T Consensus 257 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 336 (411)
T 4a1s_A 257 GDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQEL 336 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC
Confidence 001225556666666677777777666665432100 11345666667777777777777777766542
Q ss_pred CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047932 456 GLLP-NVVTYNIMIHGLCNDGQMDKAHDLFLDMEAK 490 (598)
Q Consensus 456 ~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 490 (598)
+..+ ...++..+..+|...|++++|...+++..+.
T Consensus 337 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 337 GDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 0000 1235556666667777777777777766653
No 65
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.51 E-value=5.8e-13 Score=127.32 Aligned_cols=277 Identities=12% Similarity=0.051 Sum_probs=159.8
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCC----HhHHHHHHHHHHhcCCHHHHHHHHHHHhhC----CC
Q 047932 141 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPD----TVTYNTIIDGVCKEGFVDKAMELFLQMKDE----NI 212 (598)
Q Consensus 141 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~ 212 (598)
..+......+...|++++|...|+++.+.. +.+ ...+..+...+...|++++|.+.+++.... +.
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 78 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVG-------TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGD 78 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhC-------cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccc
Confidence 345566778888999999999999988764 233 356778888888899999998888876542 11
Q ss_pred C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HhhHHHHHHHHHhCCC--------------------
Q 047932 213 N-PNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGV-HPN----VVTFSVIVDELCKNGK-------------------- 266 (598)
Q Consensus 213 ~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~-------------------- 266 (598)
. ....++..+...+...|++++|...+++..+... .++ ..++..+...+...|+
T Consensus 79 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 158 (338)
T 3ro2_A 79 QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNA 158 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHH
Confidence 1 1244667777778888888888888877654310 011 2255666666777777
Q ss_pred HHHHHHHHHHHHhc----CC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 047932 267 MEEASRLLDLMIQI----GV-HPNTFVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEAL 341 (598)
Q Consensus 267 ~~~a~~~~~~~~~~----~~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 341 (598)
+++|...+++.... +. .....++..+...+...|++++|...+++..+...
T Consensus 159 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~------------------------ 214 (338)
T 3ro2_A 159 LQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAK------------------------ 214 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH------------------------
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH------------------------
Confidence 66666666554432 10 00122344444445555555555555544432100
Q ss_pred HHHHHHccCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCC-cCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 047932 342 NLYRKMLPKGI-RPTVVTYSTLFLGLFEVHQVEHALKLFDEMQHN----DVA-ADTYIYNTFIDGLCKNGFVLEALELFC 415 (598)
Q Consensus 342 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~ 415 (598)
..+. .....++..+...+...|++++|...+++.... +.. ....++..+...+...|++++|...++
T Consensus 215 -------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 287 (338)
T 3ro2_A 215 -------EFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHL 287 (338)
T ss_dssp -------HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred -------hcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 0000 001124444555555555555555555554432 100 013455566666677777777777766
Q ss_pred HHhhCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 047932 416 AIGNSK-----YELDIISYSCLIDGLCKIGKLETAWELFQSLSRV 455 (598)
Q Consensus 416 ~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 455 (598)
++.... ......++..+...|...|++++|...+++..+.
T Consensus 288 ~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 288 KHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 654321 0111335667777777778888888877777663
No 66
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.50 E-value=2.3e-12 Score=125.72 Aligned_cols=293 Identities=11% Similarity=0.021 Sum_probs=145.5
Q ss_pred HHhcCCHHHHHHHHHHHhhC--CCCCCH--HHHHHHHHH--HHhcCCHHHHH-----------HHHHHHHHCCCCCCHhh
Q 047932 191 VCKEGFVDKAMELFLQMKDE--NINPNV--VTYNSLIHC--FSHADDWNEAK-----------RLFIKMMDQGVHPNVVT 253 (598)
Q Consensus 191 ~~~~g~~~~A~~~~~~~~~~--~~~~~~--~~~~~l~~~--~~~~~~~~~a~-----------~~~~~~~~~~~~~~~~~ 253 (598)
+.+.+++++|..+++++.+. .+..+. ..|..++.. ....++++.+. +.++.+.... .+...
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~--~~~~~ 99 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQ--ARLTG 99 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHT--HHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcC--CCchh
Confidence 45689999999999988664 222233 333444332 12223333333 5555544321 11111
Q ss_pred ------HHHHHHHHHhCCCHHHHHHHHHHHHhc----CCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----
Q 047932 254 ------FSVIVDELCKNGKMEEASRLLDLMIQI----GVHP-NTFVYNTLMDGFCLTGRVNHAKELFVSMESNGC----- 317 (598)
Q Consensus 254 ------~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~----- 317 (598)
+......+...|++++|...+++..+. +-.+ ...++..+..+|...|+++.|...+++..+...
T Consensus 100 ~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 179 (383)
T 3ulq_A 100 LLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAY 179 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTT
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccc
Confidence 122455667778888888888777654 1111 234566667777777777777777776654210
Q ss_pred -CCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhh-----CC
Q 047932 318 -MHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIR-PT----VVTYSTLFLGLFEVHQVEHALKLFDEMQH-----ND 386 (598)
Q Consensus 318 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~ 386 (598)
+....++..+...|...|++++|...+++....... ++ ..++..+...+...|++++|...+++..+ ..
T Consensus 180 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 259 (383)
T 3ulq_A 180 NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNI 259 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc
Confidence 112334555666666666666666666655432100 01 12445555555556666666665555544 11
Q ss_pred CCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCC----CCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhCCCCC
Q 047932 387 VAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSK----YELDIISYSCLIDGLCKIGK---LETAWELFQSLSRVGLLP 459 (598)
Q Consensus 387 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p 459 (598)
.+....++..+...+...|++++|...+++..... -+.....+..+...+...|+ +++|+.++++. +..|
T Consensus 260 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~ 336 (383)
T 3ulq_A 260 LPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYA 336 (383)
T ss_dssp GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHH
T ss_pred chhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHH
Confidence 12234445555555555555555555555544210 01111123334444444454 44444444333 1111
Q ss_pred C-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047932 460 N-VVTYNIMIHGLCNDGQMDKAHDLFLDME 488 (598)
Q Consensus 460 ~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 488 (598)
+ ...+..+...|...|++++|...+++..
T Consensus 337 ~~~~~~~~la~~y~~~g~~~~A~~~~~~al 366 (383)
T 3ulq_A 337 DLEDFAIDVAKYYHERKNFQKASAYFLKVE 366 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 1 2233444445555555555555555444
No 67
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.50 E-value=3.7e-12 Score=109.95 Aligned_cols=163 Identities=11% Similarity=0.042 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 047932 357 VTYSTLFLGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGL 436 (598)
Q Consensus 357 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 436 (598)
..|..+...+...|++++|+..|+++++.. |.+...+..+..++.+.|++++|...+..+.... +.+...+..+...+
T Consensus 6 ~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~ 83 (184)
T 3vtx_A 6 TIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSAN 83 (184)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHHH
Confidence 334444444444444444444444444432 2234444444444444444444444444444332 22333444444444
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccccc
Q 047932 437 CKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFIRNNETSKSS 516 (598)
Q Consensus 437 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 516 (598)
...++++.|...+.+..... +.+...+..+..++.+.|++++|++.|+++++.. +.+..+|..++.+|.+.|++++|.
T Consensus 84 ~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A~ 161 (184)
T 3vtx_A 84 FMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEAV 161 (184)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHHH
Confidence 44444444444444444421 1133444444444444444444444444444432 333444444444444444444444
Q ss_pred hhHHHHHHH
Q 047932 517 RGKLMSQMS 525 (598)
Q Consensus 517 ~~~~~~~~~ 525 (598)
+ .+++++
T Consensus 162 ~--~~~~al 168 (184)
T 3vtx_A 162 K--YFKKAL 168 (184)
T ss_dssp H--HHHHHH
T ss_pred H--HHHHHH
Confidence 4 444444
No 68
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.49 E-value=1.1e-12 Score=125.42 Aligned_cols=132 Identities=12% Similarity=-0.025 Sum_probs=62.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCC-----CCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCC-CC----HH
Q 047932 358 TYSTLFLGLFEVHQVEHALKLFDEMQHND-----VAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYE-LD----II 427 (598)
Q Consensus 358 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~ 427 (598)
.+..+...+...|++++|...++++.+.. ......++..+...+...|++++|...+++....... .+ ..
T Consensus 185 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 264 (338)
T 3ro2_A 185 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 264 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHH
Confidence 44455555556666666666665554320 0001224455555556666666666666554421100 01 33
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCC----CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047932 428 SYSCLIDGLCKIGKLETAWELFQSLSRVG----LLP-NVVTYNIMIHGLCNDGQMDKAHDLFLDMEA 489 (598)
Q Consensus 428 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 489 (598)
++..+...+...|++++|...+++..+.. ..+ ...++..+...+...|++++|...++++.+
T Consensus 265 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 265 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 44455555555555555555555544310 000 022344455555555555555555555544
No 69
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.48 E-value=9.5e-12 Score=107.34 Aligned_cols=167 Identities=11% Similarity=0.051 Sum_probs=122.6
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHH
Q 047932 139 DVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVT 218 (598)
Q Consensus 139 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 218 (598)
+..+|..++..|.+.|++++|++.|++..+.+ |.+..++..+...|.+.|++++|...+........ .+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~ 75 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-------PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDT-TSAEA 75 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-hhHHH
Confidence 55677788888888888888888888887765 45677777888888888888888888877776532 25666
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHh
Q 047932 219 YNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTLMDGFCL 298 (598)
Q Consensus 219 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 298 (598)
+..+...+...++++.+...+.+..... +.+...+..+..++.+.|++++|++.+++.++.. +.+..++..+..+|.+
T Consensus 76 ~~~~~~~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~ 153 (184)
T 3vtx_A 76 YYILGSANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEG 153 (184)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHH
Confidence 7777777777788888888887777653 3356667777777777788888887777777764 3356677777777777
Q ss_pred cCCHHHHHHHHHHHHHC
Q 047932 299 TGRVNHAKELFVSMESN 315 (598)
Q Consensus 299 ~g~~~~a~~~~~~~~~~ 315 (598)
.|++++|.+.|++..+.
T Consensus 154 ~g~~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 154 KGLRDEAVKYFKKALEK 170 (184)
T ss_dssp TTCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHhC
Confidence 77777777777777665
No 70
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.48 E-value=3.8e-12 Score=124.19 Aligned_cols=234 Identities=10% Similarity=-0.009 Sum_probs=129.1
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCC--CC----CCHH
Q 047932 145 TLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKP-DTVTYNTIIDGVCKEGFVDKAMELFLQMKDEN--IN----PNVV 217 (598)
Q Consensus 145 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~----~~~~ 217 (598)
..+..+...|++++|...|++..+.....+ .++ ...++..+...|...|++++|...+++..+.. .. ....
T Consensus 108 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 185 (383)
T 3ulq_A 108 FRGMYELDQREYLSAIKFFKKAESKLIFVK--DRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQ 185 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCC--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHhhCC--CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHH
Confidence 356677788888888888888776421000 011 24567777888888888888888887766431 10 1134
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HhhHHHHHHHHHhCCCHHHHHHHHHHHHhc----CC-CcCHH
Q 047932 218 TYNSLIHCFSHADDWNEAKRLFIKMMDQGVH-PN----VVTFSVIVDELCKNGKMEEASRLLDLMIQI----GV-HPNTF 287 (598)
Q Consensus 218 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~-~~~~~ 287 (598)
+++.+..+|...|++++|.+.+++.++.... ++ ..++..+..+|...|++++|...+++..+. +. +....
T Consensus 186 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 265 (383)
T 3ulq_A 186 CHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQ 265 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHH
Confidence 5666777777777777777777776543100 11 125566666777777777777777666652 22 22344
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCChhhHHHHHHHHHhcCC---HHHHHHHHHHHccCCCCCCHHHHH
Q 047932 288 VYNTLMDGFCLTGRVNHAKELFVSMESN----GCMHDVVSYTTLINGYCKTKN---VEEALNLYRKMLPKGIRPTVVTYS 360 (598)
Q Consensus 288 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~~~~~~~~~~ 360 (598)
++..+..++...|++++|...+++.... +.+.....+..+...|...|+ +++|+.++++.... ......+.
T Consensus 266 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~--~~~~~~~~ 343 (383)
T 3ulq_A 266 AYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLY--ADLEDFAI 343 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCH--HHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCH--HHHHHHHH
Confidence 5666666666666666666666665432 111111223444445555555 44444444443110 11122333
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH
Q 047932 361 TLFLGLFEVHQVEHALKLFDEM 382 (598)
Q Consensus 361 ~l~~~~~~~~~~~~a~~~~~~~ 382 (598)
.+...|...|++++|...+++.
T Consensus 344 ~la~~y~~~g~~~~A~~~~~~a 365 (383)
T 3ulq_A 344 DVAKYYHERKNFQKASAYFLKV 365 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHH
Confidence 4444444455555555544444
No 71
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.46 E-value=2.8e-12 Score=128.28 Aligned_cols=214 Identities=9% Similarity=-0.040 Sum_probs=177.0
Q ss_pred hHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCh-hHHHHHHHHHHhCCCCCCHHhHHHHHhccHHHHHHHHHHHHH
Q 047932 55 PNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHY-DTVLSLFKRLNSTGLFPDLYTHSILINCRIMEAAALFTKLRV 133 (598)
Q Consensus 55 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~a~~~~~~~~~ 133 (598)
+++|+..++......|. +...|..++..+...|++ ++|+..|+++++..
T Consensus 84 ~~~al~~l~~~~~~~~~--~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~---------------------------- 133 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQV--EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE---------------------------- 133 (474)
T ss_dssp HHHHHHHHHHHHTTCCC--CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC----------------------------
T ss_pred HHHHHHHHHHHhccCch--hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC----------------------------
Confidence 67778888877766664 889999999999999999 99999999888642
Q ss_pred cCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhc---------CCHHHHHHHH
Q 047932 134 FGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKE---------GFVDKAMELF 204 (598)
Q Consensus 134 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~---------g~~~~A~~~~ 204 (598)
+.+..+|..+..+|.+.|++++|.+.|+++.+.. |+...+..+...+... |++++|++.|
T Consensus 134 ---p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~ 202 (474)
T 4abn_A 134 ---PELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHC--------KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQA 202 (474)
T ss_dssp ---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC--------CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHH
T ss_pred ---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHH
Confidence 2357789999999999999999999999999864 6678999999999999 9999999999
Q ss_pred HHHhhCCCCCCHHHHHHHHHHHHhc--------CCHHHHHHHHHHHHHCCCC--CCHhhHHHHHHHHHhCCCHHHHHHHH
Q 047932 205 LQMKDENINPNVVTYNSLIHCFSHA--------DDWNEAKRLFIKMMDQGVH--PNVVTFSVIVDELCKNGKMEEASRLL 274 (598)
Q Consensus 205 ~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~ 274 (598)
++..+... .+...|..+..+|... |++++|+..|++..+.... .+...|..+..+|...|++++|...|
T Consensus 203 ~~al~~~p-~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 281 (474)
T 4abn_A 203 KLAVQMDV-LDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGF 281 (474)
T ss_dssp HHHHHHCT-TCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHhCC-CCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99988643 3678899999999888 8899999999998886320 36778888888999999999999999
Q ss_pred HHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 047932 275 DLMIQIGVHPNTFVYNTLMDGFCLTGRVNHAKELFVS 311 (598)
Q Consensus 275 ~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 311 (598)
++..+.. +.+...+..+..++...|++++|.+.+..
T Consensus 282 ~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 282 SQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9988864 33566777788888888888888765543
No 72
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.46 E-value=3.2e-12 Score=127.91 Aligned_cols=216 Identities=10% Similarity=-0.073 Sum_probs=170.8
Q ss_pred cHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCh-hHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHH
Q 047932 120 RIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHT-IVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVD 198 (598)
Q Consensus 120 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 198 (598)
.+++++..+++..... +.+...+..+...|...|++ ++|++.|+++.+.+ +.+...|..+...|...|+++
T Consensus 83 ~~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-------p~~~~a~~~lg~~~~~~g~~~ 154 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-------PELVEAWNQLGEVYWKKGDVT 154 (474)
T ss_dssp HHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-------CCCHHHHHHHHHHHHHcCCHH
Confidence 4556666777665542 34677888889999999999 99999999988875 556888999999999999999
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhC-----
Q 047932 199 KAMELFLQMKDENINPNVVTYNSLIHCFSHA---------DDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKN----- 264 (598)
Q Consensus 199 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----- 264 (598)
+|.+.|++..+. .|+...+..+..++... |++++|+..|++.++.. +.+...|..+..+|...
T Consensus 155 ~A~~~~~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~ 231 (474)
T 4abn_A 155 SAHTCFSGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTG 231 (474)
T ss_dssp HHHHHHHHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhc
Confidence 999999998875 46678888888888888 89999999999888763 34567888888888887
Q ss_pred ---CCHHHHHHHHHHHHhcCCC--cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHH
Q 047932 265 ---GKMEEASRLLDLMIQIGVH--PNTFVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEE 339 (598)
Q Consensus 265 ---g~~~~a~~~~~~~~~~~~~--~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 339 (598)
|++++|+..|+++++.... .+...+..+..+|...|++++|.+.|++..+.. +.+...+..+...+...|++++
T Consensus 232 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~e 310 (474)
T 4abn_A 232 QNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTS 310 (474)
T ss_dssp CCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHH
Confidence 8888898888888876321 367788888888888888888888888887764 4466677778888888888888
Q ss_pred HHHHHHHH
Q 047932 340 ALNLYRKM 347 (598)
Q Consensus 340 A~~~~~~~ 347 (598)
|++.+.++
T Consensus 311 Ai~~~~~~ 318 (474)
T 4abn_A 311 LLESKGKT 318 (474)
T ss_dssp HHHHTTTC
T ss_pred HHHHhccc
Confidence 87765443
No 73
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.44 E-value=6.7e-12 Score=112.56 Aligned_cols=206 Identities=8% Similarity=-0.040 Sum_probs=147.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 047932 355 TVVTYSTLFLGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLID 434 (598)
Q Consensus 355 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 434 (598)
|+..+......+...|++++|...|+++.+...+++...+..+..++...|++++|+..|+++.+.. +.+..++..+..
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 84 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSA 84 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHH
Confidence 4566667777777778888888888777776433566666667778888888888888888887664 335667788888
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHH
Q 047932 435 GLCKIGKLETAWELFQSLSRVGLLPNV-------VTYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEP--DCVIFNTIMLG 505 (598)
Q Consensus 435 ~~~~~g~~~~A~~~~~~~~~~~~~p~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~ 505 (598)
+|...|++++|+..+++..+.. +.+. ..|..+...+...|++++|++.|+++++.. +. +...+..+..+
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~l~~~ 162 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT-SKKWKTDALYSLGVL 162 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS-CHHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC-CCcccHHHHHHHHHH
Confidence 8888888888888888887742 2234 457777788888999999999999988753 33 35677778888
Q ss_pred HHhcCCccccchhHHHHHHHhcccCCCCCChHHHHH-HHHHhCCCCCChhhHHHhhhcCccccchhhHhh
Q 047932 506 FIRNNETSKSSRGKLMSQMSSCWSMCFQPKTLICSI-SIMLQKDMSPGDTMFSTALLMDPDCSCDLESLI 574 (598)
Q Consensus 506 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~-~~~~~~~~~~a~~~~~~~l~~~P~~~~~~~~l~ 574 (598)
|...|+ . .++++... + ..+...+.. .....+.+++|...++++++++|+++.+...+.
T Consensus 163 ~~~~~~-----~--~~~~a~~~---~-~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~ 221 (228)
T 4i17_A 163 FYNNGA-----D--VLRKATPL---A-SSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQD 221 (228)
T ss_dssp HHHHHH-----H--HHHHHGGG---T-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHH-----H--HHHHHHhc---c-cCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHH
Confidence 876653 2 45555543 1 222333333 445567788999999999999999998876664
No 74
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.43 E-value=1.1e-12 Score=123.93 Aligned_cols=172 Identities=16% Similarity=0.135 Sum_probs=125.2
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhC-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----
Q 047932 178 KPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDE-------NINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQ----- 245 (598)
Q Consensus 178 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----- 245 (598)
+.+..++..+...+...|++++|..+++++.+. ..+....++..+...|...|++++|...+++....
T Consensus 24 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 103 (311)
T 3nf1_A 24 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTL 103 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence 445677888899999999999999999988763 22334567788888899999999999999888764
Q ss_pred -CC-CCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhc------CC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-
Q 047932 246 -GV-HPNVVTFSVIVDELCKNGKMEEASRLLDLMIQI------GV-HPNTFVYNTLMDGFCLTGRVNHAKELFVSMESN- 315 (598)
Q Consensus 246 -~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~- 315 (598)
+. +....++..+...+...|++++|...++++.+. +. +.....+..+...+...|++++|...++++...
T Consensus 104 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 183 (311)
T 3nf1_A 104 GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIY 183 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 11 223456777888888889999988888888764 11 223445677777888888888888888877653
Q ss_pred -----C-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHcc
Q 047932 316 -----G-CMHDVVSYTTLINGYCKTKNVEEALNLYRKMLP 349 (598)
Q Consensus 316 -----~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 349 (598)
+ .+....++..+...|...|++++|...++++..
T Consensus 184 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 184 QTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1 122345566777777778888888877777664
No 75
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.40 E-value=1.8e-12 Score=122.45 Aligned_cols=170 Identities=15% Similarity=0.121 Sum_probs=119.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-------CCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhc------C
Q 047932 215 NVVTYNSLIHCFSHADDWNEAKRLFIKMMDQ-------GVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQI------G 281 (598)
Q Consensus 215 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~ 281 (598)
+..++..+...+...|++++|..+++++.+. ..+.....+..+...+...|++++|...+++++.. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 4567888889999999999999999988763 22334457778888899999999999999888764 1
Q ss_pred C-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------C-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccC---
Q 047932 282 V-HPNTFVYNTLMDGFCLTGRVNHAKELFVSMESN------G-CMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPK--- 350 (598)
Q Consensus 282 ~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--- 350 (598)
. +....++..+...+...|++++|...++++.+. + .+.....+..+...+...|++++|++.++++...
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1 223456777788888888888888888877653 1 1223455666777777777777777777776543
Q ss_pred ---CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 047932 351 ---GIRP-TVVTYSTLFLGLFEVHQVEHALKLFDEMQH 384 (598)
Q Consensus 351 ---~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 384 (598)
+..| ...++..+...+...|++++|...++++.+
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1111 234555666666677777777777766654
No 76
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.40 E-value=6.9e-11 Score=114.96 Aligned_cols=228 Identities=9% Similarity=-0.032 Sum_probs=141.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCC-----CCChhhHHHHHHHHHhcCCHHHHHHHHHHHccC----C-CCC-CHHHHHH
Q 047932 293 MDGFCLTGRVNHAKELFVSMESNGC-----MHDVVSYTTLINGYCKTKNVEEALNLYRKMLPK----G-IRP-TVVTYST 361 (598)
Q Consensus 293 l~~~~~~g~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~-~~~-~~~~~~~ 361 (598)
...+...|++++|...|++...... +....++..+...|...|+++.|...+.+.... + ..+ ...++..
T Consensus 108 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 187 (378)
T 3q15_A 108 GMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFV 187 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHH
Confidence 3445666777777777776654310 012345566667777777777777777665532 1 011 1345666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhC----CCC-cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh-----CCCCCCHHHHHH
Q 047932 362 LFLGLFEVHQVEHALKLFDEMQHN----DVA-ADTYIYNTFIDGLCKNGFVLEALELFCAIGN-----SKYELDIISYSC 431 (598)
Q Consensus 362 l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~~ 431 (598)
+...+...|++++|...|.++.+. +.+ ....++..+..++...|++++|...+++... .. +....++..
T Consensus 188 lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~ 266 (378)
T 3q15_A 188 IAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLFG 266 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHHH
Confidence 777777777777777777766542 111 1234566777777888888888888877765 33 223566777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCC---CCC-HHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCC-CHHHHHHHH
Q 047932 432 LIDGLCKIGKLETAWELFQSLSRVGL---LPN-VVTYNIMIHGLCNDGQ---MDKAHDLFLDMEAKGVEP-DCVIFNTIM 503 (598)
Q Consensus 432 l~~~~~~~g~~~~A~~~~~~~~~~~~---~p~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p-~~~~~~~l~ 503 (598)
+..++.+.|++++|...+++..+... .+. ...+..+...+...|+ +.+|+.++++. +..| ....+..+.
T Consensus 267 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la 343 (378)
T 3q15_A 267 LSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACARSAA 343 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHHHHH
Confidence 78888888888888888887766311 122 2344555555666677 66666666652 2122 234556777
Q ss_pred HHHHhcCCccccchhHHHHHHHh
Q 047932 504 LGFIRNNETSKSSRGKLMSQMSS 526 (598)
Q Consensus 504 ~~~~~~g~~~~A~~~~~~~~~~~ 526 (598)
..|...|++++|.. .++++.+
T Consensus 344 ~~y~~~g~~~~A~~--~~~~al~ 364 (378)
T 3q15_A 344 AVFESSCHFEQAAA--FYRKVLK 364 (378)
T ss_dssp HHHHHTTCHHHHHH--HHHHHHH
T ss_pred HHHHHCCCHHHHHH--HHHHHHH
Confidence 78888888888888 8877764
No 77
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.38 E-value=3.8e-10 Score=109.55 Aligned_cols=274 Identities=11% Similarity=0.031 Sum_probs=126.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCH----hhHH
Q 047932 185 NTIIDGVCKEGFVDKAMELFLQMKDENINPNVV----TYNSLIHCFSHADDWNEAKRLFIKMMDQGV-HPNV----VTFS 255 (598)
Q Consensus 185 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~----~~~~ 255 (598)
......+...|++++|...+++........+.. +++.+...+...|++++|.+.+++...... ..+. .++.
T Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 97 (373)
T 1hz4_A 18 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 97 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 334445556677777777776666542221211 344455556666666666666666544210 0111 1233
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHhc----CCC--c-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHH
Q 047932 256 VIVDELCKNGKMEEASRLLDLMIQI----GVH--P-NTFVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLI 328 (598)
Q Consensus 256 ~l~~~~~~~g~~~~a~~~~~~~~~~----~~~--~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 328 (598)
.+...+...|++++|...+++.... +.. | ....+..+...+...|++++|...+++........
T Consensus 98 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--------- 168 (373)
T 1hz4_A 98 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSY--------- 168 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTS---------
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcc---------
Confidence 4445555556666665555555432 110 1 12233334444455555555555555444321100
Q ss_pred HHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-cC-HHHHH----HHHHHHH
Q 047932 329 NGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFEVHQVEHALKLFDEMQHNDVA-AD-TYIYN----TFIDGLC 402 (598)
Q Consensus 329 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~-~~~~~----~l~~~~~ 402 (598)
+......++..+...+...|++++|...+++....... .. ..... ..+..+.
T Consensus 169 ----------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (373)
T 1hz4_A 169 ----------------------QPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQ 226 (373)
T ss_dssp ----------------------CGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHH
T ss_pred ----------------------CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHH
Confidence 00001223344444445555555555555544321000 00 11110 1223345
Q ss_pred HcCCHHHHHHHHHHHhhCCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCCCH-HHHHHHHHHHHhc
Q 047932 403 KNGFVLEALELFCAIGNSKYEL---DIISYSCLIDGLCKIGKLETAWELFQSLSRV----GLLPNV-VTYNIMIHGLCND 474 (598)
Q Consensus 403 ~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~~-~~~~~l~~~~~~~ 474 (598)
..|++++|...+++.......+ ....+..+...+...|++++|...+++.... |..++. ..+..+..++...
T Consensus 227 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~ 306 (373)
T 1hz4_A 227 MTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQA 306 (373)
T ss_dssp HTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHh
Confidence 5666666666666555432111 1223445556666666666666666655431 111111 2444455566666
Q ss_pred CCHHHHHHHHHHHHH
Q 047932 475 GQMDKAHDLFLDMEA 489 (598)
Q Consensus 475 g~~~~A~~~~~~~~~ 489 (598)
|+.++|...+++...
T Consensus 307 g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 307 GRKSDAQRVLLDALK 321 (373)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 777777766666654
No 78
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.37 E-value=1.2e-10 Score=113.32 Aligned_cols=307 Identities=9% Similarity=-0.010 Sum_probs=211.7
Q ss_pred CCHhHHHHHHHHH--HhcCCHHHHHHHHHHHhhC--CCCCC--HHHHHHHHHHH--HhcCCHH---------HHHHHHHH
Q 047932 179 PDTVTYNTIIDGV--CKEGFVDKAMELFLQMKDE--NINPN--VVTYNSLIHCF--SHADDWN---------EAKRLFIK 241 (598)
Q Consensus 179 ~~~~~~~~li~~~--~~~g~~~~A~~~~~~~~~~--~~~~~--~~~~~~l~~~~--~~~~~~~---------~a~~~~~~ 241 (598)
|+..+-+.|-.-| .+.+++++|.++++++... .+..| ...|..++..- ...+.+. ...+.++.
T Consensus 8 ~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ 87 (378)
T 3q15_A 8 PSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLET 87 (378)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHH
Confidence 4444445555555 7899999999999987653 22223 33444444321 1112222 22255555
Q ss_pred HHHCCCCCCH----hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-Cc----CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047932 242 MMDQGVHPNV----VTFSVIVDELCKNGKMEEASRLLDLMIQIGV-HP----NTFVYNTLMDGFCLTGRVNHAKELFVSM 312 (598)
Q Consensus 242 ~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~----~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 312 (598)
+.....+.+. ..+......+...|++++|+..++++.+... .+ ...++..+..+|...|+++.|...+++.
T Consensus 88 i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~a 167 (378)
T 3q15_A 88 IETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQA 167 (378)
T ss_dssp HHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 5432111111 1233445667899999999999999986521 11 2457788889999999999999999987
Q ss_pred HHC----CC-C-CChhhHHHHHHHHHhcCCHHHHHHHHHHHccC----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 047932 313 ESN----GC-M-HDVVSYTTLINGYCKTKNVEEALNLYRKMLPK----GIR-PTVVTYSTLFLGLFEVHQVEHALKLFDE 381 (598)
Q Consensus 313 ~~~----~~-~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 381 (598)
.+. +. . ....+++.+...|...|++++|.+.+.+.... +.. ....++..+..++...|++++|...+.+
T Consensus 168 l~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~ 247 (378)
T 3q15_A 168 LDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQK 247 (378)
T ss_dssp HHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 653 10 1 12456788999999999999999999987653 111 1235677888999999999999999999
Q ss_pred Hhh-----CCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCC----CCCCHHHHHHHHHHHHHcCC---HHHHHHHH
Q 047932 382 MQH-----NDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSK----YELDIISYSCLIDGLCKIGK---LETAWELF 449 (598)
Q Consensus 382 ~~~-----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~---~~~A~~~~ 449 (598)
..+ .. +....++..+...+.+.|++++|...+++..... .+.....+..+...+...++ +.+|+..+
T Consensus 248 al~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~ 326 (378)
T 3q15_A 248 AAKVSREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYF 326 (378)
T ss_dssp HHHHHHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred HHHHHHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 887 43 3347788899999999999999999999987532 12223456666777777888 77777777
Q ss_pred HHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047932 450 QSLSRVGLLPN-VVTYNIMIHGLCNDGQMDKAHDLFLDMEA 489 (598)
Q Consensus 450 ~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 489 (598)
++. +..|+ ...+..+...|...|++++|...|+++.+
T Consensus 327 ~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 327 EKK---NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhC---CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 762 22222 34567788999999999999999998875
No 79
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.36 E-value=7.4e-10 Score=107.49 Aligned_cols=201 Identities=10% Similarity=0.031 Sum_probs=133.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCC-CCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC--C-C
Q 047932 183 TYNTIIDGVCKEGFVDKAMELFLQMKDENI-NPNV----VTYNSLIHCFSHADDWNEAKRLFIKMMDQ----GVH--P-N 250 (598)
Q Consensus 183 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~ 250 (598)
+++.+...+...|++++|.+.+++...... ..+. .++..+...+...|++++|...+++.... +.. | .
T Consensus 55 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~ 134 (373)
T 1hz4_A 55 ATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMH 134 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHH
Confidence 466777888899999999999998875311 1122 23567888899999999999999988753 221 2 2
Q ss_pred HhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCc----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hhhHH
Q 047932 251 VVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHP----NTFVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHD-VVSYT 325 (598)
Q Consensus 251 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~ 325 (598)
...+..+...+...|++++|...+++........ ...++..+...+...|++++|...+++.......++ ...+.
T Consensus 135 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~ 214 (373)
T 1hz4_A 135 EFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWI 214 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHH
Confidence 3456678889999999999999999988753221 234567777888888999999998888765311111 11121
Q ss_pred -----HHHHHHHhcCCHHHHHHHHHHHccCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 047932 326 -----TLINGYCKTKNVEEALNLYRKMLPKGIRPT---VVTYSTLFLGLFEVHQVEHALKLFDEMQ 383 (598)
Q Consensus 326 -----~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 383 (598)
..+..+...|++++|...+.+.......+. ...+..+...+...|++++|...++.+.
T Consensus 215 ~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~ 280 (373)
T 1hz4_A 215 SNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELN 280 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 223346678888888888877765432111 1233444555555566666666555543
No 80
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.33 E-value=2.8e-10 Score=101.92 Aligned_cols=208 Identities=11% Similarity=-0.019 Sum_probs=152.5
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHH
Q 047932 284 PNTFVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLF 363 (598)
Q Consensus 284 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 363 (598)
.|+..+......+...|++++|...|+...+...+++...+..+..++...|++++|+..+++.....+. +...+..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence 3567888888889999999999999999888764367777777888999999999999999998876433 567788888
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCcCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCC--CHHHHHHHHH
Q 047932 364 LGLFEVHQVEHALKLFDEMQHNDVAADT-------YIYNTFIDGLCKNGFVLEALELFCAIGNSKYEL--DIISYSCLID 434 (598)
Q Consensus 364 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~ 434 (598)
..+...|++++|...+++..+.. +.+. ..+..+...+...|++++|+..|+++++.. +. +...+..+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT-SKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS-CHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC-CCcccHHHHHHHHH
Confidence 89999999999999999988764 3344 457778888888999999999999988763 22 3567777777
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 047932 435 GLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIM 503 (598)
Q Consensus 435 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 503 (598)
+|...| ...++++...+ ..+...|.... ....+.+++|+..+++..+.. |.+..+...+.
T Consensus 162 ~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~-p~~~~~~~~l~ 221 (228)
T 4i17_A 162 LFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLS-PNRTEIKQMQD 221 (228)
T ss_dssp HHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC-CCCHHHHHHHH
Confidence 775543 44455555542 22344444333 334567889999999998864 44455444443
No 81
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.32 E-value=2.2e-10 Score=98.56 Aligned_cols=165 Identities=18% Similarity=0.143 Sum_probs=110.7
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHH
Q 047932 141 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTYN 220 (598)
Q Consensus 141 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 220 (598)
..+..++..+...|++++|...++++.... +.+...+..+...+...|++++|.+.++.+.+.. +.+...+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 80 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-------AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVAT 80 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-------ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHH
Confidence 345666777777777777777777776654 4456677777777777777777777777776642 23566667
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcC
Q 047932 221 SLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTLMDGFCLTG 300 (598)
Q Consensus 221 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 300 (598)
.+...+...|++++|.+.++++.+.. +.+...+..+..++...|++++|...++.+.+.. +.+...+..+..++...|
T Consensus 81 ~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~ 158 (186)
T 3as5_A 81 VLGLTYVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMG 158 (186)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcC
Confidence 77777777777777777777776652 3355566666667777777777777777766653 234556666666666677
Q ss_pred CHHHHHHHHHHHHHC
Q 047932 301 RVNHAKELFVSMESN 315 (598)
Q Consensus 301 ~~~~a~~~~~~~~~~ 315 (598)
++++|...++.+.+.
T Consensus 159 ~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 159 RHEEALPHFKKANEL 173 (186)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHc
Confidence 777777666666543
No 82
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.32 E-value=3.2e-10 Score=97.60 Aligned_cols=162 Identities=11% Similarity=0.060 Sum_probs=77.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHH
Q 047932 324 YTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCK 403 (598)
Q Consensus 324 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 403 (598)
+..+...+...|++++|...++++..... .+...+..+...+...|++++|...++++.+.. +.+...+..+...+..
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~ 88 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDADA-FDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQ 88 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCTTS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCc-cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH
Confidence 34444445555555555555555544322 134444444555555555555555555544432 2334444444555555
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 047932 404 NGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDL 483 (598)
Q Consensus 404 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 483 (598)
.|++++|...++++.... +.+...+..++.++...|++++|...++++.+.. +.+...+..++..+...|++++|...
T Consensus 89 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~ 166 (186)
T 3as5_A 89 VQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPH 166 (186)
T ss_dssp HTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 555555555555544332 2244444455555555555555555555544431 12344444455555555555555555
Q ss_pred HHHHHH
Q 047932 484 FLDMEA 489 (598)
Q Consensus 484 ~~~~~~ 489 (598)
++++.+
T Consensus 167 ~~~~~~ 172 (186)
T 3as5_A 167 FKKANE 172 (186)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 554443
No 83
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.31 E-value=9.8e-11 Score=121.83 Aligned_cols=166 Identities=11% Similarity=0.075 Sum_probs=147.2
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHH
Q 047932 139 DVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVT 218 (598)
Q Consensus 139 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 218 (598)
+..+|+.|..+|.+.|++++|++.|++.++.+ +.+..+|..+..+|.+.|++++|++.|++..+.... +...
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-------P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a 79 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-------PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADA 79 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHH
Confidence 46789999999999999999999999999876 556889999999999999999999999999886433 6889
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHh
Q 047932 219 YNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTLMDGFCL 298 (598)
Q Consensus 219 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 298 (598)
|..+..+|...|++++|++.|++.++.. +-+...+..+..+|...|++++|++.|++.++.. +-+...+..+..++..
T Consensus 80 ~~nLg~~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~ 157 (723)
T 4gyw_A 80 YSNMGNTLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQI 157 (723)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHh
Confidence 9999999999999999999999999864 3367789999999999999999999999999875 3367889999999999
Q ss_pred cCCHHHHHHHHHHHHH
Q 047932 299 TGRVNHAKELFVSMES 314 (598)
Q Consensus 299 ~g~~~~a~~~~~~~~~ 314 (598)
.|++++|.+.++++.+
T Consensus 158 ~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 158 VCDWTDYDERMKKLVS 173 (723)
T ss_dssp TTCCTTHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHH
Confidence 9999999998887754
No 84
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.31 E-value=1.2e-10 Score=121.27 Aligned_cols=163 Identities=19% Similarity=0.088 Sum_probs=74.9
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHH
Q 047932 321 VVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDG 400 (598)
Q Consensus 321 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 400 (598)
...++.+...|.+.|++++|++.|++..+.... +..++..+..++.+.|++++|+..|+++++.. +.+...+..+..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~~ 86 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 444555555555555555555555554443221 34444444444555555555555554444432 2234444444444
Q ss_pred HHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHH
Q 047932 401 LCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLP-NVVTYNIMIHGLCNDGQMDK 479 (598)
Q Consensus 401 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~ 479 (598)
+...|++++|+..|+++++.. +-+...|..+..+|...|++++|+..|++.++. .| +...+..++.++...|++++
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l--~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKL--KPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHhhhhhHHHhcccHHH
Confidence 444444444444444444332 223444444444444444444444444444442 12 23344444444444444444
Q ss_pred HHHHHHHHH
Q 047932 480 AHDLFLDME 488 (598)
Q Consensus 480 A~~~~~~~~ 488 (598)
|.+.+++++
T Consensus 164 A~~~~~kal 172 (723)
T 4gyw_A 164 YDERMKKLV 172 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444443
No 85
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.29 E-value=5.5e-11 Score=110.33 Aligned_cols=173 Identities=15% Similarity=0.133 Sum_probs=125.3
Q ss_pred ccCCChHHHHHHHHHHHHcC------CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhccHHH
Q 047932 50 INLITPNEALCIFDYMLRMH------PSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCRIME 123 (598)
Q Consensus 50 ~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~ 123 (598)
...|++++|...|+++++.. ..+....++..++..+...|++++|+..|++++..
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~------------------- 72 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAI------------------- 72 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------------
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH-------------------
Confidence 35678888888888877621 11236778999999999999999999999987742
Q ss_pred HHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC-ccccCCCHhHHHHHHHHHHhcCCHHHHHH
Q 047932 124 AAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEF-GVVCKPDTVTYNTIIDGVCKEGFVDKAME 202 (598)
Q Consensus 124 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 202 (598)
.......+.+....++..+...|...|++++|...|+++....... +...+....++..+...|...|++++|..
T Consensus 73 ----~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 148 (283)
T 3edt_B 73 ----REKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEY 148 (283)
T ss_dssp ----HHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred ----HHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 1222111112245578899999999999999999999988641000 00013346788889999999999999999
Q ss_pred HHHHHhhC------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047932 203 LFLQMKDE------NINP-NVVTYNSLIHCFSHADDWNEAKRLFIKMMDQ 245 (598)
Q Consensus 203 ~~~~~~~~------~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 245 (598)
.++++... +-.| ...++..+..+|...|++++|...++++.+.
T Consensus 149 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 149 YYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR 198 (283)
T ss_dssp HHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99988764 1122 3457788888899999999999999888753
No 86
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.27 E-value=1.5e-09 Score=98.71 Aligned_cols=190 Identities=7% Similarity=-0.004 Sum_probs=137.9
Q ss_pred HHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 047932 375 ALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKY-ELDIISYSCLIDGLCKIGKLETAWELFQSLS 453 (598)
Q Consensus 375 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 453 (598)
++..|++....+ .++...+..+..++...|++++|++++.+.+..+. .-+...+..++..+.+.|+++.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 667777776654 44555666788888899999999999998876543 1366778888999999999999999999998
Q ss_pred hCCCCC-----CHHHHHHHHHH--HHhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccccchhHHHHHH
Q 047932 454 RVGLLP-----NVVTYNIMIHG--LCNDG--QMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFIRNNETSKSSRGKLMSQM 524 (598)
Q Consensus 454 ~~~~~p-----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 524 (598)
+. .| +..+...|+.+ ....| ++++|..+|+++.+. .|+..+...++.++.+.|++++|.+ .++.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~--~L~~l 237 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQG--IVELL 237 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHH--HHHHH
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHH--HHHHH
Confidence 74 55 34555566655 33334 899999999998764 4664444445558999999999999 99987
Q ss_pred HhcccC-----CCCCChHHHH-H---HHHHhCCCCCChhhHHHhhhcCccccchhhHh
Q 047932 525 SSCWSM-----CFQPKTLICS-I---SIMLQKDMSPGDTMFSTALLMDPDCSCDLESL 573 (598)
Q Consensus 525 ~~~~~~-----~~~p~~~~~~-~---~~~~~~~~~~a~~~~~~~l~~~P~~~~~~~~l 573 (598)
.+..+. ...|+..... . +....|+ .|.+.++++.+.+|+++.+.+-.
T Consensus 238 ~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d~~ 293 (310)
T 3mv2_B 238 LSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKHHQ 293 (310)
T ss_dssp HSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHHHH
T ss_pred HHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHHHH
Confidence 653100 0025554443 2 3344565 89999999999999999977654
No 87
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.22 E-value=2.8e-09 Score=96.98 Aligned_cols=188 Identities=12% Similarity=0.044 Sum_probs=120.5
Q ss_pred HHHHHHHHccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC-CcCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 047932 340 ALNLYRKMLPKGIRPTVVTYSTLFLGLFEVHQVEHALKLFDEMQHNDV-AADTYIYNTFIDGLCKNGFVLEALELFCAIG 418 (598)
Q Consensus 340 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 418 (598)
|+..|++....+ .++..++..+...+...|++++|++++.+.+..+. ..+...+...+..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 666777666554 33455555667777777888888888877766542 2356667777777888888888888888776
Q ss_pred hCCCCC-----CHHHHHHHHHH--HHHcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047932 419 NSKYEL-----DIISYSCLIDG--LCKIG--KLETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEA 489 (598)
Q Consensus 419 ~~~~~~-----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 489 (598)
+. .| +..+...++.+ ....| ++.+|..+|+++.+. .|+..+-..++.++.+.|++++|.+.++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 54 34 24444555544 33334 788888888887664 34433333444477788888888888876654
Q ss_pred C-----C----CCCCHHHHHHHHHHHHhcCCccccchhHHHHHHHhcccCCCCCChHHHHH
Q 047932 490 K-----G----VEPDCVIFNTIMLGFIRNNETSKSSRGKLMSQMSSCWSMCFQPKTLICSI 541 (598)
Q Consensus 490 ~-----~----~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~ 541 (598)
. + -+.|+.+...++.+....|+ +|.+ +++++.+. .|+......
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~--l~~qL~~~-----~P~hp~i~d 291 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTED--LTNQLVKL-----DHEHAFIKH 291 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHH--HHHHHHHT-----TCCCHHHHH
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHH--HHHHHHHh-----CCCChHHHH
Confidence 2 0 03356666566666666675 7777 88888754 566655444
No 88
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.19 E-value=4.8e-08 Score=97.46 Aligned_cols=106 Identities=13% Similarity=0.119 Sum_probs=62.6
Q ss_pred CC-ChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhccHHHHHHHHHH
Q 047932 52 LI-TPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCRIMEAAALFTK 130 (598)
Q Consensus 52 ~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~a~~~~~~ 130 (598)
.| +++.|+.+|++++...|. |+++.+..+|++.+..
T Consensus 7 ~~~~i~~aR~vyer~l~~~P~-----------------~~~e~~~~iferal~~-------------------------- 43 (493)
T 2uy1_A 7 MGVELSSPSAIMEHARRLYMS-----------------KDYRSLESLFGRCLKK-------------------------- 43 (493)
T ss_dssp -----CCHHHHHHHHHHHHHT-----------------TCHHHHHHHHHHHSTT--------------------------
T ss_pred cCcchHHHHHHHHHHHHHCCC-----------------CCHHHHHHHHHHHhcc--------------------------
Confidence 45 366777777777665543 5677777777776653
Q ss_pred HHHcCCCCCHhhHHHHHHHHHhcCC-hhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHH----hcCCHHHHHHHHH
Q 047932 131 LRVFGCEPDVFTYNTLINGLCRTGH-TIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVC----KEGFVDKAMELFL 205 (598)
Q Consensus 131 ~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~----~~g~~~~A~~~~~ 205 (598)
.|++..|...+....+.++ .+....+|+.++..-+. -+.+...|...+..+. .+++.+.+..+|+
T Consensus 44 ------~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~----d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~ 113 (493)
T 2uy1_A 44 ------SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFEN----YWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYM 113 (493)
T ss_dssp ------CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTT----CTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHH
T ss_pred ------CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCC----CcccHHHHHHHHHHHHhchhhhHHHHHHHHHHH
Confidence 2455555555554444442 34566777777654210 1345677777776654 3467888999999
Q ss_pred HHhhC
Q 047932 206 QMKDE 210 (598)
Q Consensus 206 ~~~~~ 210 (598)
+....
T Consensus 114 rAL~~ 118 (493)
T 2uy1_A 114 RALQT 118 (493)
T ss_dssp HHHTS
T ss_pred HHHhC
Confidence 99874
No 89
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.19 E-value=2.3e-10 Score=106.07 Aligned_cols=121 Identities=13% Similarity=-0.015 Sum_probs=58.2
Q ss_pred hCCCHHHHHHHHHHHHhc-------CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------C-CCCChhhHHHHH
Q 047932 263 KNGKMEEASRLLDLMIQI-------GVHPNTFVYNTLMDGFCLTGRVNHAKELFVSMESN------G-CMHDVVSYTTLI 328 (598)
Q Consensus 263 ~~g~~~~a~~~~~~~~~~-------~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~------~-~~~~~~~~~~l~ 328 (598)
..|++++|+..+++.++. ..+....++..+...+...|++++|...++++.+. + .+....++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 345555555555554431 11223345555666666666666666666665432 1 112334455555
Q ss_pred HHHHhcCCHHHHHHHHHHHccC------C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 047932 329 NGYCKTKNVEEALNLYRKMLPK------G-IRPTVVTYSTLFLGLFEVHQVEHALKLFDEMQ 383 (598)
Q Consensus 329 ~~~~~~~~~~~A~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 383 (598)
..|...|++++|...+.++... . .+....++..+...+...|++++|...++++.
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 154 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRAL 154 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5555566666666555555432 0 01122334444444444455555555444443
No 90
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.16 E-value=2.4e-09 Score=99.72 Aligned_cols=211 Identities=12% Similarity=0.013 Sum_probs=99.9
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhc----CCCcC-HHHHHHHHHHHHhcCCHHHH
Q 047932 231 DWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQI----GVHPN-TFVYNTLMDGFCLTGRVNHA 305 (598)
Q Consensus 231 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~-~~~~~~ll~~~~~~g~~~~a 305 (598)
++++|...|.+. +..|...|++++|...|.+.... |-.++ ..+++.+..+|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 366666666654 33455667777777777666543 11111 34556666666666666666
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHhh
Q 047932 306 KELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFEV-HQVEHALKLFDEMQH 384 (598)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~ 384 (598)
+..+++..... ...|+...+ ..++..+...|... |++++|+..|++..+
T Consensus 97 ~~~~~~Al~l~---------------~~~g~~~~~---------------a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~ 146 (292)
T 1qqe_A 97 VDSLENAIQIF---------------THRGQFRRG---------------ANFKFELGEILENDLHDYAKAIDCYELAGE 146 (292)
T ss_dssp HHHHHHHHHHH---------------HHTTCHHHH---------------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH---------------HHcCCHHHH---------------HHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence 66666554321 001111100 12333444444443 555555555544433
Q ss_pred CCC----Cc-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 047932 385 NDV----AA-DTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDI------ISYSCLIDGLCKIGKLETAWELFQSLS 453 (598)
Q Consensus 385 ~~~----~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~ 453 (598)
... .. ...++..+...+...|++++|+..|+++......... ..+..+..++...|++++|+..+++..
T Consensus 147 ~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 226 (292)
T 1qqe_A 147 WYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQ 226 (292)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGG
T ss_pred HHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 210 00 0234455555555556666666655555543221111 134455555556666666666666555
Q ss_pred hCCCCCCH------HHHHHHHHHHH--hcCCHHHHHHHHHHHH
Q 047932 454 RVGLLPNV------VTYNIMIHGLC--NDGQMDKAHDLFLDME 488 (598)
Q Consensus 454 ~~~~~p~~------~~~~~l~~~~~--~~g~~~~A~~~~~~~~ 488 (598)
+. .|+. ..+..++.++. ..+++++|+..|+++.
T Consensus 227 ~l--~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 227 SE--DPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp CC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred hh--CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 42 2221 12333444443 3345666666665543
No 91
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.13 E-value=5.2e-09 Score=97.43 Aligned_cols=166 Identities=12% Similarity=-0.036 Sum_probs=89.1
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCccccCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-CC----HHHHH
Q 047932 147 INGLCRTGHTIVALNLFEEMANGNGEFGVVCKP-DTVTYNTIIDGVCKEGFVDKAMELFLQMKDENIN-PN----VVTYN 220 (598)
Q Consensus 147 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~ 220 (598)
+..|...|++++|...|++........+ .++ ...+|+.+...|.+.|++++|+..|++....... .+ ..+++
T Consensus 44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~ 121 (292)
T 1qqe_A 44 ATIYRLRKELNLAGDSFLKAADYQKKAG--NEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKF 121 (292)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3456677888888888877765321000 011 1456777777777777888777777766542100 01 23555
Q ss_pred HHHHHHHhc-CCHHHHHHHHHHHHHCCCCC-C----HhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcCH------HH
Q 047932 221 SLIHCFSHA-DDWNEAKRLFIKMMDQGVHP-N----VVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNT------FV 288 (598)
Q Consensus 221 ~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~ 288 (598)
.+..+|... |++++|+..|++.++..... + ..++..+...+...|++++|+..++++.+....... ..
T Consensus 122 ~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 201 (292)
T 1qqe_A 122 ELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDY 201 (292)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHH
T ss_pred HHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 566666664 66666666666655421000 0 224455555566666666666666665554321111 13
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047932 289 YNTLMDGFCLTGRVNHAKELFVSMES 314 (598)
Q Consensus 289 ~~~ll~~~~~~g~~~~a~~~~~~~~~ 314 (598)
+..+..++...|++++|...|++..+
T Consensus 202 ~~~lg~~~~~~g~~~~A~~~~~~al~ 227 (292)
T 1qqe_A 202 FLKKGLCQLAATDAVAAARTLQEGQS 227 (292)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34444555555555555555555544
No 92
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.13 E-value=6.6e-10 Score=97.67 Aligned_cols=52 Identities=19% Similarity=0.275 Sum_probs=34.1
Q ss_pred cccCCChHHHHHHHHHHHHcCCCCCCHHHHHH----------------HHHHHHhcCChhHHHHHHHHHH
Q 047932 49 DINLITPNEALCIFDYMLRMHPSPPPVSSFNI----------------LFGCLAKNKHYDTVLSLFKRLN 102 (598)
Q Consensus 49 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~g~~~~A~~~~~~~~ 102 (598)
+.+.|++++|+..|+++++.+|. ++.+|.. ++.++.+.|++++|+..|++++
T Consensus 14 ~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 81 (208)
T 3urz_A 14 AIEAGQNGQAVSYFRQTIALNID--RTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELL 81 (208)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCHH--HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhCCC--ChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 45788899999999998888876 6666655 4444445555555544444444
No 93
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.13 E-value=3.5e-08 Score=98.51 Aligned_cols=349 Identities=9% Similarity=-0.058 Sum_probs=213.9
Q ss_pred CChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCC-HHHHHHHHHHHhhC-CCC-CCHHHHHHHHHHHH---
Q 047932 154 GHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGF-VDKAMELFLQMKDE-NIN-PNVVTYNSLIHCFS--- 227 (598)
Q Consensus 154 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~~~~~-~~~-~~~~~~~~l~~~~~--- 227 (598)
|+++.+..+|++.+.. .|+...|...+....+.+. .+....+|+..... |.. .+...|...+..+.
T Consensus 28 ~~~e~~~~iferal~~--------~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~ 99 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKK--------SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIE 99 (493)
T ss_dssp TCHHHHHHHHHHHSTT--------CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCS
T ss_pred CCHHHHHHHHHHHhcc--------CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhch
Confidence 8899999999999984 4689999999888877764 45677888887754 432 36677777776654
Q ss_pred -hcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh-------------CCCHHHHHHHHHHHHhcCCCcCHHHHHHHH
Q 047932 228 -HADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCK-------------NGKMEEASRLLDLMIQIGVHPNTFVYNTLM 293 (598)
Q Consensus 228 -~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll 293 (598)
..++.+.+.++|++.+......-...|......-.. .+.+..|..+++.+...-...+...|...+
T Consensus 100 ~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~ 179 (493)
T 2uy1_A 100 DEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLI 179 (493)
T ss_dssp SHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence 346788999999999874211111223222211101 112233444444443210001233555544
Q ss_pred HHHHhc--CC-----HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHH
Q 047932 294 DGFCLT--GR-----VNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGL 366 (598)
Q Consensus 294 ~~~~~~--g~-----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 366 (598)
..-... |- .+.+..+|+++.... +.+...|...+..+.+.|+.++|..++++.... + .+...+.. |
T Consensus 180 ~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P-~~~~l~~~----y 252 (493)
T 2uy1_A 180 DLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-S-DGMFLSLY----Y 252 (493)
T ss_dssp HHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-CSSHHHHH----H
T ss_pred HHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-C-CcHHHHHH----H
Confidence 433221 11 345677888888753 556888888888888999999999999999887 2 23222221 2
Q ss_pred HhcCCHHHH-HHHHHHHhhCC--------CCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 047932 367 FEVHQVEHA-LKLFDEMQHND--------VAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLC 437 (598)
Q Consensus 367 ~~~~~~~~a-~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 437 (598)
....+.++. ..+.+...... .......|...+....+.++.+.|..+|+++ ... ..+..+|...+..-.
T Consensus 253 ~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~ 330 (493)
T 2uy1_A 253 GLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEY 330 (493)
T ss_dssp HHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHH
T ss_pred HhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHH
Confidence 221111111 11221110000 0111245666666666778899999999988 322 235555554443333
Q ss_pred HcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccccc
Q 047932 438 KIG-KLETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFIRNNETSKSS 516 (598)
Q Consensus 438 ~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 516 (598)
..+ +.+.|..+|+...+. .+-+...|...+....+.|+.+.|..+|+++. .....|...+..-...|+.+.+.
T Consensus 331 ~~~~d~~~ar~ife~al~~-~~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r 404 (493)
T 2uy1_A 331 YATGSRATPYNIFSSGLLK-HPDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFR 404 (493)
T ss_dssp HHHCCSHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHH
T ss_pred HHCCChHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHH
Confidence 333 699999999998775 22245566677777778899999999998872 25677888877777789888888
Q ss_pred hhHHHHHHHhc
Q 047932 517 RGKLMSQMSSC 527 (598)
Q Consensus 517 ~~~~~~~~~~~ 527 (598)
. +++++.+.
T Consensus 405 ~--v~~~~~~~ 413 (493)
T 2uy1_A 405 E--LVDQKMDA 413 (493)
T ss_dssp H--HHHHHHHH
T ss_pred H--HHHHHHHH
Confidence 8 88888753
No 94
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.12 E-value=3.6e-09 Score=96.82 Aligned_cols=212 Identities=9% Similarity=-0.037 Sum_probs=121.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCC-CC-HHHH
Q 047932 285 NTFVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHD---VVSYTTLINGYCKTKNVEEALNLYRKMLPKGIR-PT-VVTY 359 (598)
Q Consensus 285 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~-~~~~ 359 (598)
+...+..+...+.+.|++++|...|+.+.+.. |.+ ...+..+..+|.+.|++++|+..|+++....+. |. ...+
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 44555556666666777777777777666553 222 455566666666667777777777666654221 11 3344
Q ss_pred HHHHHHHHh--------cCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHH
Q 047932 360 STLFLGLFE--------VHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSC 431 (598)
Q Consensus 360 ~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 431 (598)
..+..++.. .|++++|...|+++++.. +.+......+... ..+... ....+..
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~~--------------~~~~~~----~~~~~~~ 153 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-PNHELVDDATQKI--------------RELRAK----LARKQYE 153 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-TTCTTHHHHHHHH--------------HHHHHH----HHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-cCchhHHHHHHHH--------------HHHHHH----HHHHHHH
Confidence 555555555 666666666666665542 1111111111000 000000 0112356
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHCCCCCC---H
Q 047932 432 LIDGLCKIGKLETAWELFQSLSRVGLLP--NVVTYNIMIHGLCND----------GQMDKAHDLFLDMEAKGVEPD---C 496 (598)
Q Consensus 432 l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~p~---~ 496 (598)
+..+|...|++++|+..|+++.+..... ....+..+..+|... |++++|+..|+++++.. |.+ .
T Consensus 154 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~ 232 (261)
T 3qky_A 154 AARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF-PDSPLLR 232 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC-TTCTHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC-CCChHHH
Confidence 7788888899999999999887742211 234666777777755 88899999999888753 222 2
Q ss_pred HHHHHHHHHHHhcCCccccch
Q 047932 497 VIFNTIMLGFIRNNETSKSSR 517 (598)
Q Consensus 497 ~~~~~l~~~~~~~g~~~~A~~ 517 (598)
.....+..++.+.|+++++..
T Consensus 233 ~a~~~l~~~~~~~~~~~~~~~ 253 (261)
T 3qky_A 233 TAEELYTRARQRLTELEGDAS 253 (261)
T ss_dssp HHHHHHHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHHHHHHHHhhhhhH
Confidence 344555555666666655544
No 95
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.11 E-value=4.2e-10 Score=92.90 Aligned_cols=145 Identities=10% Similarity=-0.060 Sum_probs=110.0
Q ss_pred CcccccCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhccHHHHH
Q 047932 46 GQGDINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCRIMEAA 125 (598)
Q Consensus 46 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~a~ 125 (598)
|..+...|++++|+..|+.+....|. ++..+..++..|.+.|++++|++.|+++++. .|
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~~p~--~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p----------------- 62 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPSPRQ--KSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QE----------------- 62 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCSHHH--HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CT-----------------
T ss_pred HHHHHHcChHHHHHHHHHHhcccCcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CC-----------------
Confidence 45566788899999999988776665 6677888899999999999999999988864 22
Q ss_pred HHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHH-H
Q 047932 126 ALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMEL-F 204 (598)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~-~ 204 (598)
.+..+|..+..+|.+.|++++|+..|+++.+.+ |.+..+|..+...|.+.|++++|.+. +
T Consensus 63 ------------~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~~~~~~aa~~~~ 123 (150)
T 4ga2_A 63 ------------RDPKAHRFLGLLYELEENTDKAVECYRRSVELN-------PTQKDLVLKIAELLCKNDVTDGRAKYWV 123 (150)
T ss_dssp ------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHCSSSSHHHHHH
T ss_pred ------------CCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 366778888888999999999999999888865 45678888888888888888766554 5
Q ss_pred HHHhhCCCCCCHHHHHHHHHHHHhcCC
Q 047932 205 LQMKDENINPNVVTYNSLIHCFSHADD 231 (598)
Q Consensus 205 ~~~~~~~~~~~~~~~~~l~~~~~~~~~ 231 (598)
++..+..+ -+..+|......+...|+
T Consensus 124 ~~al~l~P-~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 124 ERAAKLFP-GSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHST-TCHHHHHHHHHHHHTCCC
T ss_pred HHHHHhCc-CCHHHHHHHHHHHHHhCc
Confidence 77766532 266677766666666554
No 96
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.10 E-value=1.6e-07 Score=86.44 Aligned_cols=231 Identities=10% Similarity=0.047 Sum_probs=173.4
Q ss_pred hHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcC--ChhHHHHHHHHHHhCCCCCCHHhHHHHHhccHHHHHHHHHHHH
Q 047932 55 PNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNK--HYDTVLSLFKRLNSTGLFPDLYTHSILINCRIMEAAALFTKLR 132 (598)
Q Consensus 55 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~a~~~~~~~~ 132 (598)
.++|++.++.++..+|. +..+|+.-..++...| ++++++.+++.++.. .|.
T Consensus 49 s~~aL~~t~~~L~~nP~--~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~--nPk----------------------- 101 (306)
T 3dra_A 49 SERALHITELGINELAS--HYTIWIYRFNILKNLPNRNLYDELDWCEEIALD--NEK----------------------- 101 (306)
T ss_dssp SHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH--CTT-----------------------
T ss_pred CHHHHHHHHHHHHHCcH--HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHH--Ccc-----------------------
Confidence 47999999999999998 8999999999998888 888888888887764 222
Q ss_pred HcCCCCCHhhHHHHHHHH----Hhc---CChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHH--HHHHH
Q 047932 133 VFGCEPDVFTYNTLINGL----CRT---GHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVD--KAMEL 203 (598)
Q Consensus 133 ~~~~~~~~~~~~~l~~~~----~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~--~A~~~ 203 (598)
+..+|+.-..++ ... +++++++.+++.+.+.+ +.+..+|+.-...+.+.|.++ ++++.
T Consensus 102 ------~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~-------pkny~aW~~R~~vl~~l~~~~~~~EL~~ 168 (306)
T 3dra_A 102 ------NYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSD-------PKNHHVWSYRKWLVDTFDLHNDAKELSF 168 (306)
T ss_dssp ------CCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred ------cHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHhcccChHHHHHH
Confidence 334444433333 344 78999999999999986 678889988888888889888 99999
Q ss_pred HHHHhhCCCCCCHHHHHHHHHHHHhcCC------HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHH-HHHHHHH
Q 047932 204 FLQMKDENINPNVVTYNSLIHCFSHADD------WNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEE-ASRLLDL 276 (598)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~ 276 (598)
++.+.+.++. |..+|+.....+...+. ++++++.+++++... +-|...|+.+...+.+.|+... +......
T Consensus 169 ~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~ 246 (306)
T 3dra_A 169 VDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQ 246 (306)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHT
T ss_pred HHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHH
Confidence 9999987655 88888887777777776 888999998888774 4477788888888888887444 4455555
Q ss_pred HHhcC--CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHH
Q 047932 277 MIQIG--VHPNTFVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTL 327 (598)
Q Consensus 277 ~~~~~--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 327 (598)
+...+ -..++..+..++.++.+.|+.++|.++++.+.+.--|.....|+..
T Consensus 247 ~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~ 299 (306)
T 3dra_A 247 FVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQ 299 (306)
T ss_dssp TEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred HHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHHHHH
Confidence 54432 1336677777888888888888888888888763213344444433
No 97
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.10 E-value=5.9e-09 Score=95.36 Aligned_cols=101 Identities=9% Similarity=-0.019 Sum_probs=80.5
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCC---HhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-
Q 047932 138 PDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPD---TVTYNTIIDGVCKEGFVDKAMELFLQMKDENIN- 213 (598)
Q Consensus 138 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~- 213 (598)
.+...+..++..+.+.|++++|+..|+++.+.. +.+ ...+..+..+|.+.|++++|+..|+.+.+....
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-------p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~ 85 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-------RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQID 85 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-------SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-------CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCC
Confidence 356677788888899999999999999998865 333 677888889999999999999999998875321
Q ss_pred -CCHHHHHHHHHHHHh--------cCCHHHHHHHHHHHHHC
Q 047932 214 -PNVVTYNSLIHCFSH--------ADDWNEAKRLFIKMMDQ 245 (598)
Q Consensus 214 -~~~~~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~ 245 (598)
....++..+..++.. .|++++|+..|+++++.
T Consensus 86 ~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 126 (261)
T 3qky_A 86 PRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR 126 (261)
T ss_dssp TTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH
Confidence 124567777888888 89999999999998876
No 98
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.08 E-value=8.6e-10 Score=115.43 Aligned_cols=172 Identities=12% Similarity=-0.059 Sum_probs=105.4
Q ss_pred ccCCChHHHHHHHHHHH--------HcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhccH
Q 047932 50 INLITPNEALCIFDYML--------RMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCRI 121 (598)
Q Consensus 50 ~~~g~~~~A~~~~~~~~--------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~ 121 (598)
...|++++|++.|++++ +.+|. +..++..++..+.+.|++++|+..|+++++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~--~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~---------------- 463 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSE--SVELPLMEVRALLDLGDVAKATRKLDDLAERV---------------- 463 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTT--CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH----------------
T ss_pred ccccCHHHHHHHHHHhhhhccccccccccc--chhHHHHHHHHHHhcCCHHHHHHHHHHHhccC----------------
Confidence 35667777777777776 55554 66667777777777777777777777666431
Q ss_pred HHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHH
Q 047932 122 MEAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAM 201 (598)
Q Consensus 122 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 201 (598)
+.+...|..+..+|...|++++|+..|+++.+.+ +.+...|..+..++.+.|++++ +
T Consensus 464 ---------------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-------P~~~~~~~~lg~~~~~~g~~~~-~ 520 (681)
T 2pzi_A 464 ---------------GWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTF-------PGELAPKLALAATAELAGNTDE-H 520 (681)
T ss_dssp ---------------CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-------TTCSHHHHHHHHHHHHHTCCCT-T
T ss_pred ---------------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCChHHHHHHHHHHHHcCChHH-H
Confidence 2245566666666777777777777777766654 3455666666667777777777 6
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HhhHHHHHHHHHhCC
Q 047932 202 ELFLQMKDENINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPN-VVTFSVIVDELCKNG 265 (598)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g 265 (598)
+.|+++.+.+.. +...|..+..++...|++++|++.|++..+. .|+ ...+..+..++...+
T Consensus 521 ~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~~~~~~~~~~ 582 (681)
T 2pzi_A 521 KFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVRTLDEVPPT--SRHFTTARLTSAVTLLSGR 582 (681)
T ss_dssp CHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHTSCTT--STTHHHHHHHHHHHTC---
T ss_pred HHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHHHHHhhccc--CcccHHHHHHHHHHHHccC
Confidence 667666654322 5556666666667777777777766666543 232 344544555544433
No 99
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.06 E-value=8.1e-09 Score=90.61 Aligned_cols=181 Identities=14% Similarity=0.108 Sum_probs=90.0
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHH
Q 047932 140 VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTY 219 (598)
Q Consensus 140 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 219 (598)
...+...+..+...|++++|+..|++..+.+ |.+...|... .... .........
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~~-----~~~~--------------~~~~~~~~~ 57 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALN-------IDRTEMYYWT-----NVDK--------------NSEISSKLA 57 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------HHHHHHHHHH-----HSCT--------------TSHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------CCChHHHHHh-----hhcc--------------hhhhhHHHH
Confidence 3445556777889999999999999999865 3334445440 0000 000011222
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhc
Q 047932 220 NSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTLMDGFCLT 299 (598)
Q Consensus 220 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 299 (598)
..+..+|...|++++|+..|++.++.. +.+...+..+..++...|++++|+..|+++++.. +.+..++..+..+|...
T Consensus 58 ~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~ 135 (208)
T 3urz_A 58 TELALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLT 135 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHH
Confidence 334555555555555555555555542 2234455555555555555555555555555543 22344555555544443
Q ss_pred CC--HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccC
Q 047932 300 GR--VNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPK 350 (598)
Q Consensus 300 g~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 350 (598)
|+ ...+...++..... .|....+.....++...|++++|+..|++..+.
T Consensus 136 ~~~~~~~~~~~~~~~~~~--~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l 186 (208)
T 3urz_A 136 AEQEKKKLETDYKKLSSP--TKMQYARYRDGLSKLFTTRYEKARNSLQKVILR 186 (208)
T ss_dssp HHHHHHHHHHHHC---CC--CHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred hHHHHHHHHHHHHHHhCC--CchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 32 22333333333221 112222233344444556666666666666554
No 100
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.06 E-value=1.1e-08 Score=82.47 Aligned_cols=130 Identities=14% Similarity=0.255 Sum_probs=83.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHH
Q 047932 142 TYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTYNS 221 (598)
Q Consensus 142 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 221 (598)
++..++..+...|++++|..+++++.+.+ +.+...+..+...+...|++++|...++++...+ +.+...+..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 74 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-------PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYN 74 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-------CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHH
Confidence 45566667777777777777777776654 3456666667777777777777777777766543 224556666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhc
Q 047932 222 LIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQI 280 (598)
Q Consensus 222 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 280 (598)
+...+...|++++|.+.++++.+.. +.+...+..++..+...|++++|...++.+...
T Consensus 75 l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 75 LGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 6666677777777777776666542 234455556666666666666666666666543
No 101
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.06 E-value=7.9e-09 Score=83.34 Aligned_cols=128 Identities=11% Similarity=0.133 Sum_probs=70.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 047932 394 YNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCN 473 (598)
Q Consensus 394 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 473 (598)
+..++..+...|++++|..+++++.+.. +.+...+..++..+...|++++|...++++.+.+ +.+...+..++..+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 3444555555555555555555555432 2244555555555555666666666666555432 2234455555555666
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccccchhHHHHHHHh
Q 047932 474 DGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFIRNNETSKSSRGKLMSQMSS 526 (598)
Q Consensus 474 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 526 (598)
.|++++|.++++++.+.. +.+...+..++.++...|++++|.. .++++.+
T Consensus 82 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~--~~~~~~~ 131 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIE--YYQKALE 131 (136)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHH--HHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHH--HHHHHHc
Confidence 666666666666655543 3345555555666666666666666 6665553
No 102
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.04 E-value=1.3e-09 Score=93.00 Aligned_cols=154 Identities=12% Similarity=0.077 Sum_probs=89.6
Q ss_pred cccCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhccHHHHHHHH
Q 047932 49 DINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCRIMEAAALF 128 (598)
Q Consensus 49 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~a~~~~ 128 (598)
+.+.|++++|...|+++++.+|. ++.++..++.++.+.|++++|+..|++++... |+.... .
T Consensus 16 ~~~~g~~~~A~~~~~~al~~~P~--~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~-~------------- 77 (176)
T 2r5s_A 16 LLQQGEHAQALNVIQTLSDELQS--RGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYK-S------------- 77 (176)
T ss_dssp HHHTTCHHHHHHHHHTSCHHHHT--SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHH-H-------------
T ss_pred HHHcCCHHHHHHHHHHHHHHCCC--cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHH-H-------------
Confidence 44678888888888888887776 78888888888888888888888888876542 222111 1
Q ss_pred HHHHHcCCCCCHhhHHHHHHH-HHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047932 129 TKLRVFGCEPDVFTYNTLING-LCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQM 207 (598)
Q Consensus 129 ~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 207 (598)
.+... +...++...|+..+++..+.+ |.+...+..+...+...|++++|...|+++
T Consensus 78 ----------------~~~~~~~~~~~~~~~a~~~~~~al~~~-------P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 134 (176)
T 2r5s_A 78 ----------------LIAKLELHQQAAESPELKRLEQELAAN-------PDNFELACELAVQYNQVGRDEEALELLWNI 134 (176)
T ss_dssp ----------------HHHHHHHHHHHTSCHHHHHHHHHHHHS-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ----------------HHHHHHHHhhcccchHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 00000 111122233455555555543 334555555556666666666666666655
Q ss_pred hhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047932 208 KDENINP-NVVTYNSLIHCFSHADDWNEAKRLFIKMM 243 (598)
Q Consensus 208 ~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 243 (598)
.+....+ +...+..+..++...|+.++|...|++.+
T Consensus 135 l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 135 LKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp HTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 5543221 23455555555555566555555555443
No 103
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.03 E-value=4.3e-07 Score=83.64 Aligned_cols=235 Identities=8% Similarity=-0.024 Sum_probs=170.4
Q ss_pred HhcCCh-hHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcC--CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH-
Q 047932 151 CRTGHT-IVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEG--FVDKAMELFLQMKDENINPNVVTYNSLIHCF- 226 (598)
Q Consensus 151 ~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~- 226 (598)
.+.|.+ ++|+.+++.++..+ |.+..+|+.-...+...| +++++++.++.+...+.+ +..+|+.-...+
T Consensus 43 ~~~~e~s~~aL~~t~~~L~~n-------P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~ 114 (306)
T 3dra_A 43 MKAEEYSERALHITELGINEL-------ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIG 114 (306)
T ss_dssp HHTTCCSHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHC-------cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHH
Confidence 344444 68999999999876 556778888888888888 899999999999887544 666777665555
Q ss_pred ---Hhc---CCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHH--HHHHHHHHHHhcCCCcCHHHHHHHHHHHHh
Q 047932 227 ---SHA---DDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKME--EASRLLDLMIQIGVHPNTFVYNTLMDGFCL 298 (598)
Q Consensus 227 ---~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 298 (598)
... +++++++++++++++.. +-+..+|+....++.+.|.++ ++++.++.+++.... |...|+.-...+..
T Consensus 115 ~~~~~l~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~ 192 (306)
T 3dra_A 115 QIMELNNNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFS 192 (306)
T ss_dssp HHHHHTTTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHS
T ss_pred HHHHhccccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHh
Confidence 455 78899999999998874 447788888888888888888 899999999887643 67777776666666
Q ss_pred cCC------HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHH-HHHHHHHHccCC--CCCCHHHHHHHHHHHHhc
Q 047932 299 TGR------VNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEE-ALNLYRKMLPKG--IRPTVVTYSTLFLGLFEV 369 (598)
Q Consensus 299 ~g~------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~ 369 (598)
.|. ++++++.++.+.... +.|...|+.+...+.+.|+... +.+...++...+ -..+...+..++..+.+.
T Consensus 193 l~~~~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~ 271 (306)
T 3dra_A 193 KKHLATDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQ 271 (306)
T ss_dssp SGGGCCHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHT
T ss_pred ccccchhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHcc
Confidence 665 778888888877764 5577888888777777776433 455666655432 123566777777777777
Q ss_pred CCHHHHHHHHHHHhhCCCCcCHHHHHH
Q 047932 370 HQVEHALKLFDEMQHNDVAADTYIYNT 396 (598)
Q Consensus 370 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ 396 (598)
|+.++|.++++.+.+.--+.....|+.
T Consensus 272 ~~~~~A~~~~~~l~~~~Dpir~~yW~~ 298 (306)
T 3dra_A 272 KKYNESRTVYDLLKSKYNPIRSNFWDY 298 (306)
T ss_dssp TCHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred CCHHHHHHHHHHHHhccChHHHHHHHH
Confidence 777888888877765311334444443
No 104
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.03 E-value=1.5e-09 Score=89.64 Aligned_cols=144 Identities=10% Similarity=-0.086 Sum_probs=92.2
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHH
Q 047932 364 LGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLE 443 (598)
Q Consensus 364 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 443 (598)
..+...|++++|+..+....... +.+...+..+...|.+.|++++|+..|+++++.. +-+..+|..+..+|...|+++
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchH
Confidence 33445566677777766665532 2234445566677777777777777777777654 336677777777777777777
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH-HHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 047932 444 TAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDL-FLDMEAKGVEPDCVIFNTIMLGFIRNNE 511 (598)
Q Consensus 444 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 511 (598)
+|+..|++..+.. +-+...|..+...|.+.|++++|.+. ++++++.. |-++.+|......+...|+
T Consensus 83 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 83 KAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCc
Confidence 7777777777642 12466677777777777777665554 46666653 4456666666666666664
No 105
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.02 E-value=3.6e-09 Score=110.77 Aligned_cols=177 Identities=10% Similarity=-0.014 Sum_probs=141.4
Q ss_pred HhcCCHHHHHHHHHHHc--------cCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHH
Q 047932 332 CKTKNVEEALNLYRKML--------PKGIRPTVVTYSTLFLGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCK 403 (598)
Q Consensus 332 ~~~~~~~~A~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 403 (598)
...|++++|++.+++.. ... +.+...+..+...+...|++++|...|+++.+.+ +.+...+..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 67899999999999987 432 2356778888889999999999999999998764 5578888899999999
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 047932 404 NGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDL 483 (598)
Q Consensus 404 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 483 (598)
.|++++|+..|+++.+.. +.+...+..+..++...|++++ +..|+++.+.+ +.+...|..+..++.+.|++++|++.
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999998765 3467888899999999999999 99999998853 23577889999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCccc
Q 047932 484 FLDMEAKGVEPDCVIFNTIMLGFIRNNETSK 514 (598)
Q Consensus 484 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 514 (598)
|+++.+.+ +.+...+..+..++...|+.++
T Consensus 557 ~~~al~l~-P~~~~a~~~~~~~~~~~~~~~~ 586 (681)
T 2pzi_A 557 LDEVPPTS-RHFTTARLTSAVTLLSGRSTSE 586 (681)
T ss_dssp HHTSCTTS-TTHHHHHHHHHHHTC-------
T ss_pred HHhhcccC-cccHHHHHHHHHHHHccCCCCC
Confidence 99988754 3346777888888877666333
No 106
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.02 E-value=4.2e-08 Score=86.25 Aligned_cols=176 Identities=12% Similarity=-0.022 Sum_probs=117.3
Q ss_pred HHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcC----CHH
Q 047932 123 EAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEG----FVD 198 (598)
Q Consensus 123 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----~~~ 198 (598)
+|.+.|++..+.| +..++..|...|...+++++|+..|++..+.+ +...+..|...|.. + +++
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---------~~~a~~~lg~~y~~-~g~~~~~~ 70 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---------DGDALALLAQLKIR-NPQQADYP 70 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---------CHHHHHHHHHHTTS-STTSCCHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---------CHHHHHHHHHHHHc-CCCCCCHH
Confidence 4556666666543 66777777777777888888888888777644 45666677777766 5 777
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCC-CCHhhHHHHHHHHHh----CCCHHH
Q 047932 199 KAMELFLQMKDENINPNVVTYNSLIHCFSH----ADDWNEAKRLFIKMMDQGVH-PNVVTFSVIVDELCK----NGKMEE 269 (598)
Q Consensus 199 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~ 269 (598)
+|.+.|++..+.| +...+..|...|.. .+++++|.++|++..+.|.. .+...+..|...|.. .+++++
T Consensus 71 ~A~~~~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~ 147 (212)
T 3rjv_A 71 QARQLAEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVK 147 (212)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHH
Confidence 8888887776653 56667777777766 67777777777777765421 015566667777766 667777
Q ss_pred HHHHHHHHHhcCCCcCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHHCC
Q 047932 270 ASRLLDLMIQIGVHPNTFVYNTLMDGFCLT-G-----RVNHAKELFVSMESNG 316 (598)
Q Consensus 270 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-g-----~~~~a~~~~~~~~~~~ 316 (598)
|..+|++..+. ..+...+..|..+|... | ++++|...|+...+.|
T Consensus 148 A~~~~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 148 ASEYFKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 77777777665 12344555566665543 2 6777777777766655
No 107
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.00 E-value=1.1e-08 Score=105.38 Aligned_cols=154 Identities=9% Similarity=-0.031 Sum_probs=115.5
Q ss_pred CCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhccHHHHHHHHHHH
Q 047932 52 LITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCRIMEAAALFTKL 131 (598)
Q Consensus 52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~a~~~~~~~ 131 (598)
.|++++|.+.|+++++.+|. +..+|..++..+.+.|++++|...|+++++.. |
T Consensus 2 ~g~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p----------------------- 54 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQ--DFVAWLMLADAELGMGDTTAGEMAVQRGLALH--P----------------------- 54 (568)
T ss_dssp -------------------C--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS--T-----------------------
T ss_pred CccHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--C-----------------------
Confidence 47899999999999998886 88999999999999999999999999998652 2
Q ss_pred HHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 047932 132 RVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDEN 211 (598)
Q Consensus 132 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 211 (598)
.+...+..+..+|...|++++|.+.|++..+.+ +.+...+..+...|.+.|++++|.+.|++..+..
T Consensus 55 ------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 121 (568)
T 2vsy_A 55 ------GHPEAVARLGRVRWTQQRHAEAAVLLQQASDAA-------PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL 121 (568)
T ss_dssp ------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred ------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 256678888899999999999999999988875 5567888999999999999999999999988764
Q ss_pred CCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCC
Q 047932 212 INPNVVTYNSLIHCFSHA---DDWNEAKRLFIKMMDQG 246 (598)
Q Consensus 212 ~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~ 246 (598)
. .+...+..+..++... |++++|.+.+++..+.+
T Consensus 122 p-~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 122 P-EEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp T-TCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred C-CCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 3 3677888888999888 99999999999988764
No 108
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.00 E-value=4.4e-08 Score=86.14 Aligned_cols=91 Identities=13% Similarity=0.088 Sum_probs=36.4
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcC----CHHHHHHHHHHHHHCCCCCChhhHHHHH
Q 047932 253 TFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTLMDGFCLTG----RVNHAKELFVSMESNGCMHDVVSYTTLI 328 (598)
Q Consensus 253 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g----~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 328 (598)
.+..+...|...+++++|+.+|++..+.| +...+..+...|.. + ++++|...|++..+.+ +...+..|.
T Consensus 20 a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~~Lg 92 (212)
T 3rjv_A 20 AQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEIVLA 92 (212)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 33333444444444444444444443332 23333333333333 3 3444444444443332 333333344
Q ss_pred HHHHh----cCCHHHHHHHHHHHccC
Q 047932 329 NGYCK----TKNVEEALNLYRKMLPK 350 (598)
Q Consensus 329 ~~~~~----~~~~~~A~~~~~~~~~~ 350 (598)
..|.. .+++++|+..|++..+.
T Consensus 93 ~~y~~g~g~~~d~~~A~~~~~~A~~~ 118 (212)
T 3rjv_A 93 RVLVNRQAGATDVAHAITLLQDAARD 118 (212)
T ss_dssp HHHTCGGGSSCCHHHHHHHHHHHTSS
T ss_pred HHHHcCCCCccCHHHHHHHHHHHHHc
Confidence 33333 34444444444444443
No 109
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.97 E-value=1e-08 Score=87.26 Aligned_cols=163 Identities=14% Similarity=0.094 Sum_probs=108.7
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHH
Q 047932 141 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTYN 220 (598)
Q Consensus 141 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 220 (598)
..+..+...+.+.|++++|...|+++.+.+ |.+...+..+...+...|++++|+..|+.+.... |+...+.
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-------P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~ 77 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDEL-------QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKS 77 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHHH-------HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHH
Confidence 345667777888888888888888887764 5567888888888888888888888888877642 2443333
Q ss_pred HHHHH-HHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCc-CHHHHHHHHHHHHh
Q 047932 221 SLIHC-FSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHP-NTFVYNTLMDGFCL 298 (598)
Q Consensus 221 ~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~ 298 (598)
.+... +...+....|...+++..+.. +.+...+..+..++...|++++|...++++++....+ +...+..+..++..
T Consensus 78 ~~~~~~~~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~ 156 (176)
T 2r5s_A 78 LIAKLELHQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSA 156 (176)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHH
Confidence 22212 112222234567777766652 2346667777777777777777777777777654322 24466677777777
Q ss_pred cCCHHHHHHHHHHHH
Q 047932 299 TGRVNHAKELFVSME 313 (598)
Q Consensus 299 ~g~~~~a~~~~~~~~ 313 (598)
.|+.++|...|++..
T Consensus 157 ~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 157 LGQGNAIASKYRRQL 171 (176)
T ss_dssp HCSSCHHHHHHHHHH
T ss_pred hCCCCcHHHHHHHHH
Confidence 777777777776654
No 110
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.92 E-value=3.7e-08 Score=91.22 Aligned_cols=166 Identities=8% Similarity=-0.009 Sum_probs=122.7
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHH
Q 047932 138 PDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVV 217 (598)
Q Consensus 138 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 217 (598)
.+...+..+...+.+.|++++|...|+++.+.. |.+...+..+...+.+.|++++|...++++... .|+..
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-------P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~ 185 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLS-------NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTR 185 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-------TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-------CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchH
Confidence 355667778888888899999999999888875 556788888888888899999999888888765 33433
Q ss_pred HHH-HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-cCHHHHHHHHHH
Q 047932 218 TYN-SLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVH-PNTFVYNTLMDG 295 (598)
Q Consensus 218 ~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~ 295 (598)
... .....+...++.+.|...+++..... +.+...+..+...+...|++++|...+.++++.... .+...+..++..
T Consensus 186 ~~~~~~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~ 264 (287)
T 3qou_A 186 YQGLVAQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEI 264 (287)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHH
Confidence 322 22333566677777888888877763 446677778888888888888888888888876422 125677778888
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 047932 296 FCLTGRVNHAKELFVSME 313 (598)
Q Consensus 296 ~~~~g~~~~a~~~~~~~~ 313 (598)
+...|+.++|...+++..
T Consensus 265 ~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 265 LAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHCTTCHHHHHHHHHH
T ss_pred HHHcCCCCcHHHHHHHHH
Confidence 888888888887777654
No 111
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.92 E-value=1.3e-07 Score=84.13 Aligned_cols=189 Identities=8% Similarity=-0.015 Sum_probs=123.5
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhccHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhc
Q 047932 74 PVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCRT 153 (598)
Q Consensus 74 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 153 (598)
++..+..++..+.+.|++++|+..|+++++. .|+. ......+..++.+|.+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~--~p~~--------------------------~~~~~a~~~lg~~~~~~ 54 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNR--YPFG--------------------------PYSQQVQLDLIYAYYKN 54 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTS--------------------------TTHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCC--------------------------hHHHHHHHHHHHHHHhc
Confidence 4567778888899999999999999998864 2210 11235677788999999
Q ss_pred CChhHHHHHHHHHHhcCCCCccccCCCH---hHHHHHHHHHHh------------------cCCHHHHHHHHHHHhhCCC
Q 047932 154 GHTIVALNLFEEMANGNGEFGVVCKPDT---VTYNTIIDGVCK------------------EGFVDKAMELFLQMKDENI 212 (598)
Q Consensus 154 g~~~~A~~~~~~~~~~~~~~~~~~~~~~---~~~~~li~~~~~------------------~g~~~~A~~~~~~~~~~~~ 212 (598)
|++++|+..|+++.+..+ .+. ..+..+..++.. .|++++|...|+++.+...
T Consensus 55 ~~~~~A~~~~~~~l~~~P-------~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P 127 (225)
T 2yhc_A 55 ADLPLAQAAIDRFIRLNP-------THPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYP 127 (225)
T ss_dssp TCHHHHHHHHHHHHHHCT-------TCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCT
T ss_pred CCHHHHHHHHHHHHHHCc-------CCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCc
Confidence 999999999999988652 222 245555555544 4567777777777766421
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCc--CHHHHH
Q 047932 213 NPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHP--NTFVYN 290 (598)
Q Consensus 213 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~ 290 (598)
-+...+....... .+...+. .....+...+.+.|++++|+..|+.+++..... ....+.
T Consensus 128 -~~~~a~~a~~~l~----------~~~~~~~--------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 188 (225)
T 2yhc_A 128 -NSQYTTDATKRLV----------FLKDRLA--------KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALP 188 (225)
T ss_dssp -TCTTHHHHHHHHH----------HHHHHHH--------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHH
T ss_pred -CChhHHHHHHHHH----------HHHHHHH--------HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHH
Confidence 1222222111100 0000000 011345677888899999999999988763221 124677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCC
Q 047932 291 TLMDGFCLTGRVNHAKELFVSMESNG 316 (598)
Q Consensus 291 ~ll~~~~~~g~~~~a~~~~~~~~~~~ 316 (598)
.+..++.+.|+.++|.+.++.+...+
T Consensus 189 ~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 189 LMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 78888999999999999998888764
No 112
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.90 E-value=1.7e-07 Score=83.24 Aligned_cols=190 Identities=11% Similarity=-0.058 Sum_probs=126.7
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CH-
Q 047932 139 DVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINP-NV- 216 (598)
Q Consensus 139 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~- 216 (598)
+...+..++..+.+.|++++|+..|+++....+. .+.....+..++.+|.+.|++++|+..|+++.+..... ..
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~ 78 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPF----GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNID 78 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT----STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHH
Confidence 3455667788899999999999999999886511 01113577888999999999999999999998753321 11
Q ss_pred HHHHHHHHHHHh------------------cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHH
Q 047932 217 VTYNSLIHCFSH------------------ADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMI 278 (598)
Q Consensus 217 ~~~~~l~~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 278 (598)
.++..+..++.. .|++++|...|+++++.. +-+........... .+...+
T Consensus 79 ~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-P~~~~a~~a~~~l~----------~~~~~~- 146 (225)
T 2yhc_A 79 YVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-PNSQYTTDATKRLV----------FLKDRL- 146 (225)
T ss_dssp HHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC-TTCTTHHHHHHHHH----------HHHHHH-
T ss_pred HHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC-cCChhHHHHHHHHH----------HHHHHH-
Confidence 244445555543 456777777777776642 11222222111100 000000
Q ss_pred hcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHccCCC
Q 047932 279 QIGVHPNTFVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHD---VVSYTTLINGYCKTKNVEEALNLYRKMLPKGI 352 (598)
Q Consensus 279 ~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 352 (598)
......+...|.+.|++++|...|+.+.+.. |.+ ...+..+..+|.+.|++++|.+.++.+...++
T Consensus 147 -------~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 147 -------AKYEYSVAEYYTERGAWVAVVNRVEGMLRDY-PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp -------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred -------HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHC-cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 0112346678999999999999999998863 222 25688899999999999999999999887643
No 113
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.89 E-value=4.2e-08 Score=90.88 Aligned_cols=163 Identities=10% Similarity=0.017 Sum_probs=77.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHH-HHHH
Q 047932 285 NTFVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTY-STLF 363 (598)
Q Consensus 285 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~l~ 363 (598)
+...+..+...+...|++++|...|+++.... |.+...+..+...+...|++++|...++++.... |+.... ....
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~~ 192 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVAQ 192 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHHH
Confidence 33444555555566666666666666655543 3345555556666666666666666666555442 222211 1111
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCCH
Q 047932 364 LGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYEL-DIISYSCLIDGLCKIGKL 442 (598)
Q Consensus 364 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~ 442 (598)
..+...++.+.|...++++.... +.+...+..+...+...|++++|+..|.++++..... +...+..++..+...|+.
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 271 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG 271 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT
T ss_pred HHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC
Confidence 22333444444444454444432 3334444444455555555555555555444332110 133444444444444444
Q ss_pred HHHHHHHHH
Q 047932 443 ETAWELFQS 451 (598)
Q Consensus 443 ~~A~~~~~~ 451 (598)
++|...+++
T Consensus 272 ~~a~~~~r~ 280 (287)
T 3qou_A 272 DALASXYRR 280 (287)
T ss_dssp CHHHHHHHH
T ss_pred CcHHHHHHH
Confidence 444444443
No 114
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.89 E-value=5.8e-08 Score=99.82 Aligned_cols=154 Identities=12% Similarity=-0.014 Sum_probs=118.7
Q ss_pred cCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCH
Q 047932 153 TGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTYNSLIHCFSHADDW 232 (598)
Q Consensus 153 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 232 (598)
.|++++|.+.|+++.+.+ +.+...|..+...+...|++++|.+.|++..+... .+...+..+..+|...|++
T Consensus 2 ~g~~~~A~~~~~~al~~~-------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~ 73 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-------PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHP-GHPEAVARLGRVRWTQQRH 73 (568)
T ss_dssp --------------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTST-TCHHHHHHHHHHHHHTTCH
T ss_pred CccHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCH
Confidence 478899999999998865 55688999999999999999999999999998643 3678899999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhc---CCHHHHHHHH
Q 047932 233 NEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTLMDGFCLT---GRVNHAKELF 309 (598)
Q Consensus 233 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~---g~~~~a~~~~ 309 (598)
++|.+.+++..+.. +.+...+..+..++...|++++|.+.+++..+.. +.+...+..+..++... |++++|.+.+
T Consensus 74 ~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~ 151 (568)
T 2vsy_A 74 AEAAVLLQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQV 151 (568)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 99999999998874 3467788899999999999999999999998874 33677888899999999 9999999999
Q ss_pred HHHHHCC
Q 047932 310 VSMESNG 316 (598)
Q Consensus 310 ~~~~~~~ 316 (598)
++..+.+
T Consensus 152 ~~al~~~ 158 (568)
T 2vsy_A 152 RAAVAQG 158 (568)
T ss_dssp HHHHHHT
T ss_pred HHHHhcC
Confidence 9998875
No 115
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.85 E-value=4.7e-08 Score=91.62 Aligned_cols=163 Identities=12% Similarity=0.027 Sum_probs=83.7
Q ss_pred cCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHh-cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC
Q 047932 153 TGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCK-EGFVDKAMELFLQMKDENINPNVVTYNSLIHCFSHADD 231 (598)
Q Consensus 153 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 231 (598)
.|++++|.+++++..+.. +.. +.+ .++++.|...|.++ ...|...|+
T Consensus 4 ~~~~~eA~~~~~~a~k~~-------~~~----------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~ 51 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL-------KTS----------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQ 51 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH-------CCC----------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTC
T ss_pred cchHHHHHHHHHHHHHHc-------ccc----------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCC
Confidence 456677777777766542 110 011 35666666665544 345566677
Q ss_pred HHHHHHHHHHHHHCCC----CC-CHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcC--C-Cc--CHHHHHHHHHHHHhcCC
Q 047932 232 WNEAKRLFIKMMDQGV----HP-NVVTFSVIVDELCKNGKMEEASRLLDLMIQIG--V-HP--NTFVYNTLMDGFCLTGR 301 (598)
Q Consensus 232 ~~~a~~~~~~~~~~~~----~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~-~~--~~~~~~~ll~~~~~~g~ 301 (598)
+++|...|.+..+... .. -..+|..+..+|...|++++|+..+++.++.- . .+ ...++..+..+|.. |+
T Consensus 52 ~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~ 130 (307)
T 2ifu_A 52 LEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LD 130 (307)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TC
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CC
Confidence 7777777766554210 00 12355566666666777777776666655431 0 01 12344455555555 66
Q ss_pred HHHHHHHHHHHHHCCCC----C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHc
Q 047932 302 VNHAKELFVSMESNGCM----H-DVVSYTTLINGYCKTKNVEEALNLYRKML 348 (598)
Q Consensus 302 ~~~a~~~~~~~~~~~~~----~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 348 (598)
+++|+..|++....... . ...++..+...|...|++++|+..|++..
T Consensus 131 ~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 182 (307)
T 2ifu_A 131 LSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEK 182 (307)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 66666666555432100 0 12334444555555555555555555444
No 116
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.84 E-value=1.3e-07 Score=84.91 Aligned_cols=210 Identities=9% Similarity=-0.047 Sum_probs=144.0
Q ss_pred cCCChHHHHHHHHHHHHcCCCCCCHHHHHHH-------HHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhccHHH
Q 047932 51 NLITPNEALCIFDYMLRMHPSPPPVSSFNIL-------FGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCRIME 123 (598)
Q Consensus 51 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~ 123 (598)
..+++..|.+.|.++.+.+|. ....|..+ ...+.+.++..+++..+.+.+.. .|+......-|..
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~--~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l--~p~~l~a~~~~~g---- 89 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDES--ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQI--SMSTLNARIAIGG---- 89 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTC--CGGGGCCEEECCT----
T ss_pred cCCCHHHHHHHHHHHHHhChh--hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcC--ChhhhhhhhccCC----
Confidence 579999999999999999997 99999988 56666666666666666665542 3322110000000
Q ss_pred HHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHH
Q 047932 124 AAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMEL 203 (598)
Q Consensus 124 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 203 (598)
+|.. +..-+..-...+..+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..
T Consensus 90 ---~y~~-~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--------p~~~~~~~~a~l~~~~~r~~dA~~~ 157 (282)
T 4f3v_A 90 ---LYGD-ITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--------SEHLVAWMKAVVYGAAERWTDVIDQ 157 (282)
T ss_dssp ---TTCC-CEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--------CHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ---cccc-cccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--------CchHHHHHHHHHHHHcCCHHHHHHH
Confidence 0000 000000012344567788889999999999999887754 3333666777788999999999999
Q ss_pred HHHHhhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HhhHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 047932 204 FLQMKDENINPN--VVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPN--VVTFSVIVDELCKNGKMEEASRLLDLMIQ 279 (598)
Q Consensus 204 ~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 279 (598)
|+...... .|. ...+..+..++...|++++|+..|++.......|. .........++.+.|+.++|...|+++..
T Consensus 158 l~~a~~~~-d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a 236 (282)
T 4f3v_A 158 VKSAGKWP-DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQT 236 (282)
T ss_dssp HTTGGGCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhhccC-CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 98665531 111 23677788889999999999999999875433243 33556677788899999999999999988
Q ss_pred cC
Q 047932 280 IG 281 (598)
Q Consensus 280 ~~ 281 (598)
..
T Consensus 237 ~~ 238 (282)
T 4f3v_A 237 TH 238 (282)
T ss_dssp HS
T ss_pred cC
Confidence 63
No 117
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.84 E-value=8.6e-08 Score=89.83 Aligned_cols=137 Identities=12% Similarity=-0.044 Sum_probs=90.2
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-----
Q 047932 140 VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINP----- 214 (598)
Q Consensus 140 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~----- 214 (598)
..+|+.+..+|.+.|++++|+..|++........+. ......++..+...|.. |++++|+..|++........
T Consensus 76 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~-~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~ 153 (307)
T 2ifu_A 76 AKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGT-PDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQ 153 (307)
T ss_dssp HHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTC-HHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhH
Confidence 346888899999999999999999987754210000 01113567778888877 88888888888776531100
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCC-HhhHHHHHHHHHhCCCHHHHHHHHHHHH
Q 047932 215 NVVTYNSLIHCFSHADDWNEAKRLFIKMMDQG----VHPN-VVTFSVIVDELCKNGKMEEASRLLDLMI 278 (598)
Q Consensus 215 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 278 (598)
...++..+...|...|++++|+..|++.+... ..+. ...+..++.++...|++++|...+++.+
T Consensus 154 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 154 AAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 13466777777888888888888887776531 1111 1244555566666777777777777776
No 118
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.80 E-value=5.3e-06 Score=77.17 Aligned_cols=174 Identities=10% Similarity=0.044 Sum_probs=132.7
Q ss_pred CCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHhCCCCCCHHhHHHHHhccHHHHHHHHHH
Q 047932 52 LITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNK-HYDTVLSLFKRLNSTGLFPDLYTHSILINCRIMEAAALFTK 130 (598)
Q Consensus 52 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~a~~~~~~ 130 (598)
.+..++|++.++.++..+|. +..+|+.-..++...| .+++++.+++.++... |
T Consensus 67 ~e~se~AL~lt~~~L~~nP~--~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n--P---------------------- 120 (349)
T 3q7a_A 67 EEKSERALELTEIIVRMNPA--HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN--L---------------------- 120 (349)
T ss_dssp TCCSHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT--C----------------------
T ss_pred CCCCHHHHHHHHHHHHhCch--hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC--C----------------------
Confidence 34457899999999999997 8999998888888888 4888888888877652 2
Q ss_pred HHHcCCCCCHhhHHHHHHHHHhc-C-ChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHH--------HH
Q 047932 131 LRVFGCEPDVFTYNTLINGLCRT-G-HTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVD--------KA 200 (598)
Q Consensus 131 ~~~~~~~~~~~~~~~l~~~~~~~-g-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~--------~A 200 (598)
.+..+|+.-..++.+. + ++++++++++.+...+ +.|..+|+.-...+.+.|.++ ++
T Consensus 121 -------Kny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~d-------pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eE 186 (349)
T 3q7a_A 121 -------KSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPD-------PKNYHTWAYLHWLYSHFSTLGRISEAQWGSE 186 (349)
T ss_dssp -------CCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSC-------TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHH
T ss_pred -------CcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHhccccccchhhHHHH
Confidence 3556677666666665 6 8899999999999886 667888877766666666666 88
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC-------HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCH
Q 047932 201 MELFLQMKDENINPNVVTYNSLIHCFSHADD-------WNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKM 267 (598)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 267 (598)
++.++++.+..+. |..+|+.....+.+.+. ++++++.+++++... +-|...|+.+-..+.+.|..
T Consensus 187 Le~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 187 LDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp HHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCC
Confidence 8899988887554 88888888888777776 688888888888763 44667777766666665553
No 119
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.79 E-value=2.6e-07 Score=73.29 Aligned_cols=111 Identities=14% Similarity=0.016 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 047932 391 TYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHG 470 (598)
Q Consensus 391 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 470 (598)
...+......+.+.|++++|+..|+++++.. +.+..+|..+..+|...|++++|+..+++.++.+ +.+...|..+..+
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~ 90 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAAC 90 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHH
Confidence 3456667777888888888888888877654 4467778888888888888888888888887753 2246777788888
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 047932 471 LCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIML 504 (598)
Q Consensus 471 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 504 (598)
+...|++++|++.|++.++.. |-+...+..+..
T Consensus 91 ~~~~~~~~~A~~~~~~al~l~-P~~~~a~~~l~~ 123 (126)
T 4gco_A 91 LVAMREWSKAQRAYEDALQVD-PSNEEAREGVRN 123 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHC-cCCHHHHHHHHH
Confidence 888888888888888887754 445555555544
No 120
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.77 E-value=6.4e-06 Score=76.62 Aligned_cols=176 Identities=9% Similarity=-0.009 Sum_probs=128.5
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcC-CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 047932 150 LCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEG-FVDKAMELFLQMKDENINPNVVTYNSLIHCFSH 228 (598)
Q Consensus 150 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 228 (598)
..+.+..++|+++++.++..+ +.+..+|+.-...+...| .+++++++++.+...+.+ +..+|+.-..++..
T Consensus 64 ~~~~e~se~AL~lt~~~L~~n-------P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~ 135 (349)
T 3q7a_A 64 AAKEEKSERALELTEIIVRMN-------PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDR 135 (349)
T ss_dssp HHTTCCSHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHhC-------chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHH
Confidence 334455578999999998876 556778888888888888 599999999999887554 77788887777766
Q ss_pred c-C-CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHH--------HHHHHHHHHHhcCCCcCHHHHHHHHHHHHh
Q 047932 229 A-D-DWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKME--------EASRLLDLMIQIGVHPNTFVYNTLMDGFCL 298 (598)
Q Consensus 229 ~-~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--------~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 298 (598)
. + ++++++++++++++.. +.|..+|+....++.+.|.++ ++++.++++++.... |...|+.....+.+
T Consensus 136 l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~ 213 (349)
T 3q7a_A 136 ISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVS 213 (349)
T ss_dssp HCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTT
T ss_pred hcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHh
Confidence 6 6 7889999999988764 446777777666666655555 788888888877533 67777777777766
Q ss_pred cCC-------HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC
Q 047932 299 TGR-------VNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKN 336 (598)
Q Consensus 299 ~g~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 336 (598)
.+. ++++++.++++.... +.|...|+.+-..+.+.|.
T Consensus 214 l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 214 RPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp STTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred ccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 665 567777777777654 4567777766666665554
No 121
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.76 E-value=9.5e-08 Score=81.33 Aligned_cols=126 Identities=11% Similarity=0.132 Sum_probs=103.2
Q ss_pred CcccccCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhccHHHHH
Q 047932 46 GQGDINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCRIMEAA 125 (598)
Q Consensus 46 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~a~ 125 (598)
+..+...|++++|...|+.++...|. ++.+|..++..+...|++++|+..|+++++..
T Consensus 17 ~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-------------------- 74 (177)
T 2e2e_A 17 LHQFASQQNPEAQLQALQDKIRANPQ--NSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-------------------- 74 (177)
T ss_dssp TCCCC-----CCCCHHHHHHHHHCCS--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--------------------
T ss_pred hhhhhhccCHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------------------
Confidence 34467889999999999999999886 88999999999999999999999999988541
Q ss_pred HHHHHHHHcCCCCCHhhHHHHHHH-HHhcCCh--hHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHH
Q 047932 126 ALFTKLRVFGCEPDVFTYNTLING-LCRTGHT--IVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAME 202 (598)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~--~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 202 (598)
+.+...+..+..+ +...|++ ++|...|+++.+.+ +.+...+..+...+...|++++|..
T Consensus 75 -----------p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~~ 136 (177)
T 2e2e_A 75 -----------GENAELYAALATVLYYQASQHMTAQTRAMIDKALALD-------SNEITALMLLASDAFMQANYAQAIE 136 (177)
T ss_dssp -----------CSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred -----------CCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhC-------CCcHHHHHHHHHHHHHcccHHHHHH
Confidence 2355677778888 7789998 99999999998875 5567888899999999999999999
Q ss_pred HHHHHhhCC
Q 047932 203 LFLQMKDEN 211 (598)
Q Consensus 203 ~~~~~~~~~ 211 (598)
.|+.+....
T Consensus 137 ~~~~al~~~ 145 (177)
T 2e2e_A 137 LWQKVMDLN 145 (177)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHhhC
Confidence 999988863
No 122
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.75 E-value=5.5e-06 Score=76.88 Aligned_cols=172 Identities=10% Similarity=0.046 Sum_probs=112.5
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC---CC--
Q 047932 141 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENIN---PN-- 215 (598)
Q Consensus 141 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---~~-- 215 (598)
..+...+..+...|++++|.+.++...+...... ........+..+...+...|++++|+..+++....... +.
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 154 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHP-EFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCH-HHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCCh-hHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence 3455667788899999999999988877541000 00001123444666677888899999988887753211 11
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCC----HhhHHHHHHHHHhCCCHHHHHHHHHHHHhcC----CC-c
Q 047932 216 VVTYNSLIHCFSHADDWNEAKRLFIKMMDQ--GVHPN----VVTFSVIVDELCKNGKMEEASRLLDLMIQIG----VH-P 284 (598)
Q Consensus 216 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~-~ 284 (598)
..+++.+...|...|++++|...|++..+. ..+.+ ..++..+..+|...|++++|+..+++.++.. .. .
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~ 234 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL 234 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHH
Confidence 447788888888888888888888887621 01111 1467777888888888888888888776531 00 0
Q ss_pred CHHHHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 047932 285 NTFVYNTLMDGFCLTGRVNHA-KELFVSME 313 (598)
Q Consensus 285 ~~~~~~~ll~~~~~~g~~~~a-~~~~~~~~ 313 (598)
-..++..+..+|...|++++| ...+++..
T Consensus 235 ~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 235 IGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 145666777777777777777 55566544
No 123
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.75 E-value=7.3e-07 Score=78.37 Aligned_cols=130 Identities=12% Similarity=-0.002 Sum_probs=99.3
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHH
Q 047932 141 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTYN 220 (598)
Q Consensus 141 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 220 (598)
..+..+...+...|++++|+..|++.. .++...|..+...+...|++++|++.|++..... +.+...+.
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~----------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~ 75 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ----------DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYF 75 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS----------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc----------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHH
Confidence 345567777888888888888888763 3467788888888888888888888888887753 33677888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCC---------------CHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Q 047932 221 SLIHCFSHADDWNEAKRLFIKMMDQGVHP---------------NVVTFSVIVDELCKNGKMEEASRLLDLMIQIG 281 (598)
Q Consensus 221 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---------------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 281 (598)
.+..+|...|++++|...|++..+..... ....+..+..++...|++++|...++.+.+..
T Consensus 76 ~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 76 QRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 88888888888888888888888753211 11566777778888888888888888887754
No 124
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.73 E-value=3.8e-07 Score=80.21 Aligned_cols=127 Identities=11% Similarity=-0.063 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 047932 393 IYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLC 472 (598)
Q Consensus 393 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 472 (598)
.+..+...+...|++++|...|+++. .|+..++..+..+|...|++++|+..+++..+.. +.+...+..+..++.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence 34556667788888888888888774 4577888888888888899999999888887753 335677888888888
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCH----------------HHHHHHHHHHHhcCCccccchhHHHHHHHhc
Q 047932 473 NDGQMDKAHDLFLDMEAKGVEPDC----------------VIFNTIMLGFIRNNETSKSSRGKLMSQMSSC 527 (598)
Q Consensus 473 ~~g~~~~A~~~~~~~~~~~~~p~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 527 (598)
..|++++|++.|+++.+.. +.+. ..+..+..+|...|++++|.+ .++++.+.
T Consensus 83 ~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~--~~~~al~~ 150 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEE--QLALATSM 150 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHH--HHHHHHTT
T ss_pred HcccHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHH--HHHHHHHc
Confidence 8999999999998888753 2222 678888889999999999999 99999855
No 125
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.72 E-value=3.8e-07 Score=72.27 Aligned_cols=97 Identities=12% Similarity=0.176 Sum_probs=64.6
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHH
Q 047932 141 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTYN 220 (598)
Q Consensus 141 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 220 (598)
..+...+..|.+.|++++|++.|++..+.+ |.+...|..+..+|.+.|++++|++.|++..+.+.. +...|.
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~ 85 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-------PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYI 85 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHH
Confidence 345666677777777777777777776654 455666777777777777777777777776664322 556666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC
Q 047932 221 SLIHCFSHADDWNEAKRLFIKMMDQ 245 (598)
Q Consensus 221 ~l~~~~~~~~~~~~a~~~~~~~~~~ 245 (598)
.+..++...|++++|++.|++.++.
T Consensus 86 ~lg~~~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 86 RKAACLVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 6667777777777777777766664
No 126
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.71 E-value=6.7e-06 Score=76.31 Aligned_cols=161 Identities=16% Similarity=0.123 Sum_probs=86.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHccCCC-CCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-cC----HHHHHHH
Q 047932 328 INGYCKTKNVEEALNLYRKMLPKGI-RPTV----VTYSTLFLGLFEVHQVEHALKLFDEMQHNDVA-AD----TYIYNTF 397 (598)
Q Consensus 328 ~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l 397 (598)
+..+...|++++|..++++...... .|+. ..+..+...+...+++++|...+.++...... .+ ..+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 4556666777777777776655321 1111 11223444445556666776666666653111 11 2346666
Q ss_pred HHHHHHcCCHHHHHHHHHHHhh----C-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCCC-HHHHHH
Q 047932 398 IDGLCKNGFVLEALELFCAIGN----S-KYEL-DIISYSCLIDGLCKIGKLETAWELFQSLSRV----GLLPN-VVTYNI 466 (598)
Q Consensus 398 ~~~~~~~g~~~~A~~~~~~~~~----~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~ 466 (598)
..+|...|++++|...|+++.+ . +..+ ...++..+..+|...|++++|+..+++..+. +..+. ..+|..
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 241 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ 241 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 6666666666666666666552 1 1111 1225566666666666666666666665431 11111 445666
Q ss_pred HHHHHHhcC-CHHHHHHHHHHHH
Q 047932 467 MIHGLCNDG-QMDKAHDLFLDME 488 (598)
Q Consensus 467 l~~~~~~~g-~~~~A~~~~~~~~ 488 (598)
+..++.+.| ++++|.+.++++.
T Consensus 242 lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 242 RGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHHH
Confidence 666666666 3466666666654
No 127
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.71 E-value=1.2e-06 Score=81.10 Aligned_cols=190 Identities=12% Similarity=0.001 Sum_probs=136.1
Q ss_pred HHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcC--CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCC-HHHHHHH
Q 047932 372 VEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNG--FVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGK-LETAWEL 448 (598)
Q Consensus 372 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~ 448 (598)
+++++.+++.+...+ +.+..+|+.-...+...| .+++++.+++.+.+.. +-|..+|+.-..++...|. ++++++.
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 567777777777654 556777777776777777 4788888888888765 4477788877777777787 5888888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhc--------------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----
Q 047932 449 FQSLSRVGLLPNVVTYNIMIHGLCND--------------GQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFIRN----- 509 (598)
Q Consensus 449 ~~~~~~~~~~p~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----- 509 (598)
++++++..+. |...|+.....+... +.++++++.+.+++... |-|...|+-+-..+.+.
T Consensus 168 ~~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 168 TDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHHHHCSC-CHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHHHHCCC-CHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccc
Confidence 8888876433 677777666555543 45788999999888765 66777887665555554
Q ss_pred ------CCccccchhHHHHHHHhcccCCCCCChHHHHH----HHH----HhCCCCCChhhHHHhhhcCccccchhhHh
Q 047932 510 ------NETSKSSRGKLMSQMSSCWSMCFQPKTLICSI----SIM----LQKDMSPGDTMFSTALLMDPDCSCDLESL 573 (598)
Q Consensus 510 ------g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~----~~~----~~~~~~~a~~~~~~~l~~~P~~~~~~~~l 573 (598)
+..+++++ .++++.+. .||. .|.. ++. ..+..++....+.+++++||.....|..+
T Consensus 246 ~~~~~~~~l~~el~--~~~elle~-----~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~ 315 (331)
T 3dss_A 246 LSVEKSTVLQSELE--SCKELQEL-----EPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL 315 (331)
T ss_dssp CCHHHHHHHHHHHH--HHHHHHHH-----CTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred cchHHHHHHHHHHH--HHHHHHhh-----Cccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHH
Confidence 45678888 89999855 7877 4544 111 12344466788999999999999988766
No 128
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.70 E-value=3.1e-08 Score=81.19 Aligned_cols=98 Identities=16% Similarity=0.046 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 047932 426 IISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLG 505 (598)
Q Consensus 426 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 505 (598)
...+..+...+...|++++|+..|+++.... +.+...|..+..+|...|++++|+..|+++++.. |.+...|..+..+
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~ 113 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHH
Confidence 3345555555556666666666666655532 1235555555555666666666666666665543 3345555555666
Q ss_pred HHhcCCccccchhHHHHHHHhc
Q 047932 506 FIRNNETSKSSRGKLMSQMSSC 527 (598)
Q Consensus 506 ~~~~g~~~~A~~~~~~~~~~~~ 527 (598)
|...|++++|.. .++++++.
T Consensus 114 ~~~lg~~~eA~~--~~~~al~l 133 (151)
T 3gyz_A 114 QLRLKAPLKAKE--CFELVIQH 133 (151)
T ss_dssp HHHTTCHHHHHH--HHHHHHHH
T ss_pred HHHcCCHHHHHH--HHHHHHHh
Confidence 666666666666 66665533
No 129
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.69 E-value=7.5e-07 Score=82.81 Aligned_cols=166 Identities=10% Similarity=0.054 Sum_probs=113.7
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCH----hHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-CC---
Q 047932 144 NTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDT----VTYNTIIDGVCKEGFVDKAMELFLQMKDENIN-PN--- 215 (598)
Q Consensus 144 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~--- 215 (598)
...+..+...|++++|..++++...... ..++. ..+..+...+...|++++|+..|+++...... ++
T Consensus 79 ~~~i~~~~~~~~y~~a~~~~~~~l~~~~-----~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~ 153 (293)
T 3u3w_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEE-----YHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQ 153 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCC-----CCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhcccc-----CChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHH
Confidence 3346778899999999999999887541 12221 13335677777788999999999988874222 22
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCCCC-HhhHHHHHHHHHhCCCHHHHHHHHHHHHhcC----CCc
Q 047932 216 -VVTYNSLIHCFSHADDWNEAKRLFIKMMDQ-----GVHPN-VVTFSVIVDELCKNGKMEEASRLLDLMIQIG----VHP 284 (598)
Q Consensus 216 -~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~ 284 (598)
..+++.+..+|...|++++|...|+++++. +..+. ..++..+..+|.+.|++++|...+++.++.. ..+
T Consensus 154 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~ 233 (293)
T 3u3w_A 154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMA 233 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHH
Confidence 236888888899999999999999888741 11111 2366777888888888888888888776531 111
Q ss_pred -CHHHHHHHHHHHHhcCC-HHHHHHHHHHHHH
Q 047932 285 -NTFVYNTLMDGFCLTGR-VNHAKELFVSMES 314 (598)
Q Consensus 285 -~~~~~~~ll~~~~~~g~-~~~a~~~~~~~~~ 314 (598)
-..++..+..++...|+ +++|.+.+++...
T Consensus 234 ~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 234 LIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp THHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 14567777777777774 5777777776543
No 130
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.69 E-value=3.5e-07 Score=84.26 Aligned_cols=99 Identities=13% Similarity=-0.014 Sum_probs=75.8
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHH
Q 047932 139 DVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVT 218 (598)
Q Consensus 139 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 218 (598)
+...+..++..+.+.|++++|+..|+++.... +.+...|..+...|.+.|++++|...+++..+... .+...
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~ 74 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-------PLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKA 74 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT-TCHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHH
Confidence 45567777788888888888888888887764 45677788888888888888888888888877532 35667
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047932 219 YNSLIHCFSHADDWNEAKRLFIKMMDQ 245 (598)
Q Consensus 219 ~~~l~~~~~~~~~~~~a~~~~~~~~~~ 245 (598)
+..+..+|...|++++|...|++..+.
T Consensus 75 ~~~lg~~~~~~g~~~~A~~~~~~al~l 101 (281)
T 2c2l_A 75 HFFLGQCQLEMESYDEAIANLQRAYSL 101 (281)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 777888888888888888888877654
No 131
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.69 E-value=5.9e-07 Score=71.57 Aligned_cols=120 Identities=9% Similarity=0.002 Sum_probs=89.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 047932 390 DTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIH 469 (598)
Q Consensus 390 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 469 (598)
+...+..+...+...|++++|...|+++.... +.+...+..+..++...|++++|...+++..+.. +.+...+..+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHH
Confidence 34566667777778888888888888777653 3467777788888888888888888888877752 234667777888
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCc
Q 047932 470 GLCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFIRNNET 512 (598)
Q Consensus 470 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 512 (598)
++...|++++|...++++.+.. +.+...+..+..++.+.|++
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhcC
Confidence 8888888888888888887764 44667777777777777765
No 132
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.68 E-value=2.5e-08 Score=94.65 Aligned_cols=167 Identities=11% Similarity=-0.016 Sum_probs=121.9
Q ss_pred cCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhccHHHHHHHHHH
Q 047932 51 NLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCRIMEAAALFTK 130 (598)
Q Consensus 51 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~a~~~~~~ 130 (598)
..+++++|+..|+......|. +...|..+...+.+.|++++|+..|++++... |+...+ ..+.+...
T Consensus 125 ~L~~~~~A~~~~~~a~~~~p~--~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~------~~~~~~~~--- 191 (336)
T 1p5q_A 125 HLKSFEKAKESWEMNSEEKLE--QSTIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSF------SNEEAQKA--- 191 (336)
T ss_dssp EEEEEECCCCGGGCCHHHHHH--HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCC------CSHHHHHH---
T ss_pred EEeecccccchhcCCHHHHHH--HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh--hccccC------ChHHHHHH---
Confidence 445677788888777766665 77899999999999999999999999998753 221000 00000000
Q ss_pred HHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 047932 131 LRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDE 210 (598)
Q Consensus 131 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 210 (598)
. +....+|..+..+|.+.|++++|+..|+++.+.+ +.+...|..+..+|...|++++|+..|+++.+.
T Consensus 192 -~----~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 259 (336)
T 1p5q_A 192 -Q----ALRLASHLNLAMCHLKLQAFSAAIESCNKALELD-------SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL 259 (336)
T ss_dssp -H----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -H----HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 0 0124677888888999999999999999988875 556788888888888999999999999888876
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 047932 211 NINPNVVTYNSLIHCFSHADDWNEA-KRLFIKMM 243 (598)
Q Consensus 211 ~~~~~~~~~~~l~~~~~~~~~~~~a-~~~~~~~~ 243 (598)
.. .+...+..+..++...|+.+++ ...|..|.
T Consensus 260 ~P-~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 260 YP-NNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp CS-SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33 3667788888888888888877 44555554
No 133
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.67 E-value=6.2e-07 Score=75.11 Aligned_cols=128 Identities=8% Similarity=-0.083 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 047932 393 IYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLC 472 (598)
Q Consensus 393 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 472 (598)
.+..+...+...|++++|...|+++.... +.+..++..+..++...|++++|...+++..+.. +.+...+..+..++.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 44555566666777777777777666543 3356666667777777777777777777766642 224556666677777
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHH--HHHHHhcCCccccchhHHHHHHH
Q 047932 473 NDGQMDKAHDLFLDMEAKGVEPDCVIFNTI--MLGFIRNNETSKSSRGKLMSQMS 525 (598)
Q Consensus 473 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l--~~~~~~~g~~~~A~~~~~~~~~~ 525 (598)
..|++++|...++++.+.. +.+...+..+ +..+...|++++|.+ .++...
T Consensus 93 ~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~--~~~~~~ 144 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIA--GDEHKR 144 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH
T ss_pred HhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHH--cccchH
Confidence 7777777777777776653 3344444333 333566677777777 666554
No 134
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.66 E-value=8.9e-07 Score=74.13 Aligned_cols=128 Identities=9% Similarity=0.012 Sum_probs=73.4
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHH
Q 047932 141 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTYN 220 (598)
Q Consensus 141 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 220 (598)
..+..++..+...|++++|...|++..... +.+...+..+...+...|++++|.+.+++..... +.+...+.
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~ 85 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-------PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYY 85 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHH
Confidence 345556666666777777777777666653 3456666666666666666666666666666542 22455566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHH--HHHHHHhCCCHHHHHHHHHHH
Q 047932 221 SLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSV--IVDELCKNGKMEEASRLLDLM 277 (598)
Q Consensus 221 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~g~~~~a~~~~~~~ 277 (598)
.+..++...|++++|...|++..+.. +.+...+.. .+..+...|++++|...+...
T Consensus 86 ~~a~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 86 RRAASNMALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 66666666666666666666665542 123333322 222244555555555555544
No 135
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.66 E-value=1.1e-06 Score=69.28 Aligned_cols=116 Identities=13% Similarity=0.108 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 047932 391 TYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHG 470 (598)
Q Consensus 391 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 470 (598)
...+..+...+...|++++|..+++++.+.. +.+..++..+...+...|++++|...++++.+.. +.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 4455666666777777777777777766543 3356666777777777777777777777776642 2345666677777
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 047932 471 LCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFIRN 509 (598)
Q Consensus 471 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 509 (598)
+...|++++|...++++.+.. +.+...+..+..++...
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQKQ 124 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHhc
Confidence 777777777777777776653 34555555555555443
No 136
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.66 E-value=9.4e-08 Score=78.39 Aligned_cols=111 Identities=10% Similarity=0.015 Sum_probs=84.7
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhccHHHHHHHHHHHHHcCCCCC
Q 047932 60 CIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCRIMEAAALFTKLRVFGCEPD 139 (598)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~a~~~~~~~~~~~~~~~ 139 (598)
..|++++..+|. +...+..++..+.+.|++++|+..|++++... +.+
T Consensus 8 ~~~~~al~~~p~--~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-------------------------------p~~ 54 (148)
T 2vgx_A 8 GTIAMLNEISSD--TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-------------------------------HYD 54 (148)
T ss_dssp CSHHHHTTCCHH--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------------------------TTC
T ss_pred hhHHHHHcCCHh--hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-------------------------------ccc
Confidence 456666666655 77778888888888888888888888877541 235
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 047932 140 VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDE 210 (598)
Q Consensus 140 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 210 (598)
...|..+..+|...|++++|+..|+++...+ +.+...+..+..+|...|++++|.+.|+...+.
T Consensus 55 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 55 SRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-------IXEPRFPFHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-------TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-------CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 6677778888888888888888888888765 456777888888888888888888888887764
No 137
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.65 E-value=4.3e-06 Score=77.64 Aligned_cols=165 Identities=13% Similarity=0.078 Sum_probs=88.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC---CcC--HHH
Q 047932 324 YTTLINGYCKTKNVEEALNLYRKMLPKGIRPTV-----VTYSTLFLGLFEVHQVEHALKLFDEMQHNDV---AAD--TYI 393 (598)
Q Consensus 324 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~--~~~ 393 (598)
+...+..+...|++++|.+.+.+.......... ..+..+...+...|++++|...+.++..... .+. ..+
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 334455566666777776666665543221110 1122333444555666666666666554211 111 335
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhh---CCC-CC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC----CCCC-HH
Q 047932 394 YNTFIDGLCKNGFVLEALELFCAIGN---SKY-EL--DIISYSCLIDGLCKIGKLETAWELFQSLSRVG----LLPN-VV 462 (598)
Q Consensus 394 ~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~-~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~p~-~~ 462 (598)
++.+...|...|++++|...|+++.+ ... .+ ...++..+..+|...|++++|+..+++..+.. .... ..
T Consensus 158 ~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~ 237 (293)
T 2qfc_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 66666666666666666666666551 110 00 11456666666777777777777766654421 1111 44
Q ss_pred HHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 047932 463 TYNIMIHGLCNDGQMDKA-HDLFLDME 488 (598)
Q Consensus 463 ~~~~l~~~~~~~g~~~~A-~~~~~~~~ 488 (598)
+|..+..+|...|++++| ...+++..
T Consensus 238 ~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 238 LYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 566666666677777776 55566554
No 138
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.64 E-value=7e-07 Score=71.48 Aligned_cols=119 Identities=10% Similarity=-0.013 Sum_probs=81.7
Q ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 047932 389 ADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMI 468 (598)
Q Consensus 389 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 468 (598)
.+...+..+...+...|++++|...|+++.+.. +.+..++..+..++...|++++|+..++++.+.. +.+...+..+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la 91 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKA 91 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHH
Confidence 345666677777777777777777777777553 3366677777777777778888888777777642 23566777777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 047932 469 HGLCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFIRNN 510 (598)
Q Consensus 469 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 510 (598)
.++...|++++|++.|++..+.. +.+...+..+..++...|
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhc
Confidence 77777888888888887777653 334456666666665554
No 139
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.62 E-value=9.8e-07 Score=70.58 Aligned_cols=98 Identities=14% Similarity=0.108 Sum_probs=54.0
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHH
Q 047932 140 VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTY 219 (598)
Q Consensus 140 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 219 (598)
...+..++..+.+.|++++|...|++..+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-------~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~ 87 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-------PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGY 87 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-------TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-------CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHH
Confidence 3445555556666666666666666655543 3345555555555555666666666665555432 1244455
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047932 220 NSLIHCFSHADDWNEAKRLFIKMMDQ 245 (598)
Q Consensus 220 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 245 (598)
..+..++...|++++|.+.|++..+.
T Consensus 88 ~~la~~~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 88 TRKAAALEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 55555555555555555555555543
No 140
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.61 E-value=1.3e-06 Score=68.91 Aligned_cols=98 Identities=15% Similarity=0.266 Sum_probs=56.1
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHH
Q 047932 140 VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTY 219 (598)
Q Consensus 140 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 219 (598)
...+..++..+...|++++|.+.|+++.... +.+..++..+...+...|++++|...++++.... +.+..++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 80 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-------PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAW 80 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-------cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHH
Confidence 3445555666666666666666666665543 3345555566666666666666666666655532 2244555
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047932 220 NSLIHCFSHADDWNEAKRLFIKMMDQ 245 (598)
Q Consensus 220 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 245 (598)
..+..++...|++++|...++++.+.
T Consensus 81 ~~la~~~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 81 YNLGNAYYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 55555566666666666666655544
No 141
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.60 E-value=1.2e-07 Score=77.68 Aligned_cols=96 Identities=13% Similarity=-0.022 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 047932 427 ISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGF 506 (598)
Q Consensus 427 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 506 (598)
..+..+...+...|++++|+..|+++.... +.+...|..+..++...|++++|+..|++++... +.+...+..+..+|
T Consensus 22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 22 EQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHH
Confidence 344444555555555555555555554432 1234445555555555555555555555555433 33444555555555
Q ss_pred HhcCCccccchhHHHHHHHh
Q 047932 507 IRNNETSKSSRGKLMSQMSS 526 (598)
Q Consensus 507 ~~~g~~~~A~~~~~~~~~~~ 526 (598)
...|++++|.. .++++++
T Consensus 100 ~~~g~~~~A~~--~~~~al~ 117 (148)
T 2vgx_A 100 LQXGELAEAES--GLFLAQE 117 (148)
T ss_dssp HHTTCHHHHHH--HHHHHHH
T ss_pred HHcCCHHHHHH--HHHHHHH
Confidence 55555555555 5555543
No 142
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.60 E-value=5.7e-07 Score=73.58 Aligned_cols=96 Identities=10% Similarity=-0.024 Sum_probs=50.7
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHH
Q 047932 142 TYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTYNS 221 (598)
Q Consensus 142 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 221 (598)
.+..+...+.+.|++++|+..|+++...+ |.+...|..+..+|...|++++|+..|+++...... +...|..
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~-------P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~ 109 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYD-------FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFH 109 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHH
Confidence 44455555555555555555555555543 334555555555555555555555555555543221 4445555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC
Q 047932 222 LIHCFSHADDWNEAKRLFIKMMDQ 245 (598)
Q Consensus 222 l~~~~~~~~~~~~a~~~~~~~~~~ 245 (598)
+..+|...|++++|...|++.++.
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Confidence 555555555555555555555543
No 143
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.60 E-value=8e-07 Score=77.36 Aligned_cols=133 Identities=10% Similarity=-0.047 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhC----CC-CcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhC----CCC--CC
Q 047932 357 VTYSTLFLGLFEVHQVEHALKLFDEMQHN----DV-AADTYIYNTFIDGLCKNGFVLEALELFCAIGNS----KYE--LD 425 (598)
Q Consensus 357 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~--~~ 425 (598)
..+..+...+...|++++|...+++.... +. +.....+..+...+...|++++|...+++.... +.. ..
T Consensus 27 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 106 (203)
T 3gw4_A 27 GARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAA 106 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHH
Confidence 34444444444455555555554444331 11 112334445555555566666666555554421 101 11
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047932 426 IISYSCLIDGLCKIGKLETAWELFQSLSRVGL-LPN----VVTYNIMIHGLCNDGQMDKAHDLFLDMEA 489 (598)
Q Consensus 426 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 489 (598)
..++..+...+...|++++|...+++..+... ..+ ..++..+...+...|++++|.+.+++..+
T Consensus 107 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 107 SANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 23455556666666666666666665543100 011 12345556666666777776666666553
No 144
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.57 E-value=1.5e-06 Score=69.22 Aligned_cols=116 Identities=14% Similarity=0.015 Sum_probs=56.3
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHH
Q 047932 141 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTYN 220 (598)
Q Consensus 141 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 220 (598)
..+..++..+...|++++|...|+++.... +.+...+..+...+...|++++|.+.++...... +.+...+.
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 84 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELN-------PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYG 84 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcC-------CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHH
Confidence 344455555555555555555555555443 3344455555555555555555555555554432 12344444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCC
Q 047932 221 SLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNG 265 (598)
Q Consensus 221 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 265 (598)
.+..++...|++++|...+++..+.. +.+...+..+..++...|
T Consensus 85 ~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 128 (131)
T 2vyi_A 85 RMGLALSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLR 128 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHh
Confidence 55555555555555555555554432 123333444444444333
No 145
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.57 E-value=2.4e-06 Score=76.78 Aligned_cols=187 Identities=7% Similarity=-0.041 Sum_probs=122.1
Q ss_pred hcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHH-------HHHHHhcCCHHHHHHHHHHHhhCCCCCC---------
Q 047932 152 RTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTI-------IDGVCKEGFVDKAMELFLQMKDENINPN--------- 215 (598)
Q Consensus 152 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l-------i~~~~~~g~~~~A~~~~~~~~~~~~~~~--------- 215 (598)
..++...|.+.|.++...+ |.....|..+ ...+.+.++..+++..+..... +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-------P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~ 88 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-------ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIG 88 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECC
T ss_pred cCCCHHHHHHHHHHHHHhC-------hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccC
Confidence 6899999999999999976 5567888877 4666666666666666655554 1221
Q ss_pred -------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCC
Q 047932 216 -------------VVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGV 282 (598)
Q Consensus 216 -------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 282 (598)
......+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+......
T Consensus 89 g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~- 165 (282)
T 4f3v_A 89 GLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP- 165 (282)
T ss_dssp TTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-
T ss_pred CcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-
Confidence 1233445666777888888888887776543 333344555567778888888888887554431
Q ss_pred CcC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHccC
Q 047932 283 HPN--TFVYNTLMDGFCLTGRVNHAKELFVSMESNGCMH--DVVSYTTLINGYCKTKNVEEALNLYRKMLPK 350 (598)
Q Consensus 283 ~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 350 (598)
.|. ...+..+..++...|++++|+..|++.......| ..........++.+.|+.++|..+|+++...
T Consensus 166 d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 166 DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 111 2356666677777777777777777776432212 2334555666677777777777777777765
No 146
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.57 E-value=5.2e-07 Score=83.11 Aligned_cols=95 Identities=8% Similarity=-0.097 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHH
Q 047932 217 VTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTLMDGF 296 (598)
Q Consensus 217 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 296 (598)
..+..+...+...|++++|+..|++.++.. +.+...+..+..++.+.|++++|...++++++.. +.+...+..+..++
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 334444444444444444444444444431 1133344444444444444444444444444432 12333444444444
Q ss_pred HhcCCHHHHHHHHHHHH
Q 047932 297 CLTGRVNHAKELFVSME 313 (598)
Q Consensus 297 ~~~g~~~~a~~~~~~~~ 313 (598)
...|++++|...|+...
T Consensus 83 ~~~g~~~~A~~~~~~al 99 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAY 99 (281)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHH
Confidence 44444444444444443
No 147
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.56 E-value=6.9e-07 Score=77.76 Aligned_cols=156 Identities=10% Similarity=0.036 Sum_probs=93.5
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCC-CCHHHHHHHHHH
Q 047932 151 CRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDE----NIN-PNVVTYNSLIHC 225 (598)
Q Consensus 151 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~-~~~~~~~~l~~~ 225 (598)
...|++++|.++++.+... ......++..+...+...|++++|...+++.... +.. ....++..+...
T Consensus 3 ~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~ 75 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH-------PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMV 75 (203)
T ss_dssp ----CHHHHHHHHHHHHTS-------TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHhcCC-------hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 4578888888855555432 1234677788888888888888888888877652 111 123466677777
Q ss_pred HHhcCCHHHHHHHHHHHHHC----CCCC--CHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcC---CCcC--HHHHHHHHH
Q 047932 226 FSHADDWNEAKRLFIKMMDQ----GVHP--NVVTFSVIVDELCKNGKMEEASRLLDLMIQIG---VHPN--TFVYNTLMD 294 (598)
Q Consensus 226 ~~~~~~~~~a~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~--~~~~~~ll~ 294 (598)
+...|++++|.+.+++.... +..+ ....+..+...+...|++++|...+++..... ..+. ..++..+..
T Consensus 76 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 155 (203)
T 3gw4_A 76 ERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGD 155 (203)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHH
Confidence 77888888888877776543 1011 12345566667777777777777777665421 0111 123445555
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 047932 295 GFCLTGRVNHAKELFVSME 313 (598)
Q Consensus 295 ~~~~~g~~~~a~~~~~~~~ 313 (598)
++...|++++|...+++..
T Consensus 156 ~~~~~g~~~~A~~~~~~al 174 (203)
T 3gw4_A 156 LAQQEKNLLEAQQHWLRAR 174 (203)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHCcCHHHHHHHHHHHH
Confidence 6666666666666665544
No 148
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.54 E-value=0.00012 Score=67.81 Aligned_cols=190 Identities=11% Similarity=0.019 Sum_probs=134.6
Q ss_pred HHhcCChh-HHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCC----------HHHHHHHHHHHhhCCCCCCHHH
Q 047932 150 LCRTGHTI-VALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGF----------VDKAMELFLQMKDENINPNVVT 218 (598)
Q Consensus 150 ~~~~g~~~-~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~ 218 (598)
..+.|.+. +|+.+++.+...+ |.+..+|+.--..+...+. +++++.+++.+...+.+ +..+
T Consensus 39 ~~~~~e~s~eaL~~t~~~L~~n-------P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK-ny~a 110 (331)
T 3dss_A 39 KRQAGELDESVLELTSQILGAN-------PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGT 110 (331)
T ss_dssp HHHTTCCSHHHHHHHHHHHTTC-------TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHC-------chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC-CHHH
Confidence 34567665 7999999999977 4556677665555444433 67888999988886544 7888
Q ss_pred HHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCC-HHHHHHHHHHHHhcCCCcCHHHHHHHHHH
Q 047932 219 YNSLIHCFSHAD--DWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGK-MEEASRLLDLMIQIGVHPNTFVYNTLMDG 295 (598)
Q Consensus 219 ~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 295 (598)
|+.-..++...+ ++++++.+++++.+.. +.|...|+....++...|. ++++++.++.+++..+ .|...|+.....
T Consensus 111 W~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p-~N~SAW~~R~~l 188 (331)
T 3dss_A 111 WHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCL 188 (331)
T ss_dssp HHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCS-CCHHHHHHHHHH
T ss_pred HHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCC-CCHHHHHHHHHH
Confidence 888888887777 4899999999999874 4478888888888888888 5899999999988753 377777766665
Q ss_pred HHhc--------------CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc-----------CCHHHHHHHHHHHccC
Q 047932 296 FCLT--------------GRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKT-----------KNVEEALNLYRKMLPK 350 (598)
Q Consensus 296 ~~~~--------------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------~~~~~A~~~~~~~~~~ 350 (598)
+... +.++++++.+....... |.|...|+-+-..+.+. +.++++++.+.++.+.
T Consensus 189 l~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~ 267 (331)
T 3dss_A 189 LPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQEL 267 (331)
T ss_dssp HHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhh
Confidence 5554 34667777777777654 45667776555444443 2345555555555554
No 149
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.52 E-value=1.3e-06 Score=82.76 Aligned_cols=130 Identities=13% Similarity=-0.062 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCC--------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 047932 392 YIYNTFIDGLCKNGFVLEALELFCAIGNSKYELD--------------IISYSCLIDGLCKIGKLETAWELFQSLSRVGL 457 (598)
Q Consensus 392 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 457 (598)
..+..+...+.+.|++++|+..|++++....... ..+|..+..+|.+.|++++|+..++++++..
T Consensus 148 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~- 226 (336)
T 1p5q_A 148 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD- 226 (336)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 3444555555555555555555555554321111 4566777777777777777777777776642
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcccc-chhHHHHHHH
Q 047932 458 LPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFIRNNETSKS-SRGKLMSQMS 525 (598)
Q Consensus 458 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~~ 525 (598)
+.+...|..+..+|...|++++|+..|+++++.. +.+...+..+..++.+.|+.++| .. .++.|.
T Consensus 227 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~--~~~~~~ 292 (336)
T 1p5q_A 227 SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREKK--LYANMF 292 (336)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH
Confidence 2256667777777777777777777777777654 44566677777777777777666 33 555554
No 150
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.51 E-value=4.4e-07 Score=73.84 Aligned_cols=108 Identities=13% Similarity=-0.003 Sum_probs=60.4
Q ss_pred HHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhccHHHHHHHHHHHHHcCCCCCHh
Q 047932 62 FDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCRIMEAAALFTKLRVFGCEPDVF 141 (598)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~a~~~~~~~~~~~~~~~~~ 141 (598)
|+.++..+|. +...+..++..+.+.|++++|+..|++++... +.+..
T Consensus 7 l~~al~~~p~--~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-------------------------------p~~~~ 53 (142)
T 2xcb_A 7 LAMLRGLSED--TLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-------------------------------HYDAR 53 (142)
T ss_dssp --CCTTCCHH--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------------------------TTCHH
T ss_pred HHHHHcCCHH--HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-------------------------------CccHH
Confidence 3444444433 45555556666666666666666666555431 12444
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 047932 142 TYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKD 209 (598)
Q Consensus 142 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 209 (598)
.|..+..+|.+.|++++|+..|++....+ +.+...+..+..+|...|++++|.+.|+....
T Consensus 54 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 54 YFLGLGACRQSLGLYEQALQSYSYGALMD-------INEPRFPFHAAECHLQLGDLDGAESGFYSARA 114 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhcC-------CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55556666666666666666666666554 34455556666666666666666666666554
No 151
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.50 E-value=1.2e-06 Score=74.47 Aligned_cols=122 Identities=8% Similarity=0.136 Sum_probs=84.0
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH-HHhc
Q 047932 151 CRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTYNSLIHC-FSHA 229 (598)
Q Consensus 151 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~ 229 (598)
...|++++|...++...... +.+...|..+...|...|++++|...|+++..... .+...+..+..+ +...
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~l~~~~ 92 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-------PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRG-ENAELYAALATVLYYQA 92 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-------CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHT
T ss_pred hhccCHHHHHHHHHHHHHhC-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhc
Confidence 45677778888888777764 45667777788888888888888888887776532 256667777777 6677
Q ss_pred CCH--HHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Q 047932 230 DDW--NEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIG 281 (598)
Q Consensus 230 ~~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 281 (598)
|++ ++|...++++++.. +.+...+..+..++...|++++|...++.+.+..
T Consensus 93 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 93 SQHMTAQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp TTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred CCcchHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 777 78888887777653 3345666677777777888888888877777653
No 152
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.50 E-value=2.6e-06 Score=67.55 Aligned_cols=107 Identities=9% Similarity=-0.001 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC--CCC----HHHHHH
Q 047932 393 IYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGL--LPN----VVTYNI 466 (598)
Q Consensus 393 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~p~----~~~~~~ 466 (598)
.+..+...+.+.|++++|+..|+++++.. +.+...|..+..+|...|++++|+..+++.++... .++ ..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 45556667777777777777777776654 33566677777777777777777777777655211 111 235666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 047932 467 MIHGLCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTI 502 (598)
Q Consensus 467 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 502 (598)
+..++...|++++|++.|++.+.. .|++.....+
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~~l 122 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSE--FRDPELVKKV 122 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHHHH
Confidence 667777777777777777777653 4565554433
No 153
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.49 E-value=7.6e-06 Score=63.55 Aligned_cols=109 Identities=11% Similarity=-0.010 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 047932 392 YIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGL 471 (598)
Q Consensus 392 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 471 (598)
..+..+...+...|++++|...|+++.... +.+...+..+..++...|++++|...+++..+.. +.+...+..+..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 445556666667777777777777766543 3356666777777777777777777777776642 22456666677777
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 047932 472 CNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIM 503 (598)
Q Consensus 472 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 503 (598)
...|++++|.+.+++..+.+ +.+...+..+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 113 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHE-ANNPQLKEGLQ 113 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcC-CCCHHHHHHHH
Confidence 77777777777777777643 33444444443
No 154
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.48 E-value=3.1e-06 Score=67.00 Aligned_cols=98 Identities=10% Similarity=-0.015 Sum_probs=66.5
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHH
Q 047932 140 VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTY 219 (598)
Q Consensus 140 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 219 (598)
...+..++..+.+.|++++|+..|++..+.+ +.+...|..+..++.+.|++++|+..+++..+... .+...|
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~ 75 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-------PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP-NFVRAY 75 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-------CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHH
Confidence 3455666677777777777777777777654 44566777777777777777777777777766532 255666
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047932 220 NSLIHCFSHADDWNEAKRLFIKMMDQ 245 (598)
Q Consensus 220 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 245 (598)
..+..++...|++++|...|++..+.
T Consensus 76 ~~lg~~~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 76 IRKATAQIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHh
Confidence 66777777777777777777766654
No 155
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.47 E-value=2.6e-06 Score=67.54 Aligned_cols=97 Identities=10% Similarity=0.089 Sum_probs=60.7
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC--CCC---
Q 047932 141 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENI--NPN--- 215 (598)
Q Consensus 141 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~--- 215 (598)
.++..++..+.+.|++++|+..|++..+.+ |.+...|..+..+|.+.|++++|++.+++..+.+. .++
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-------p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 81 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD-------PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKL 81 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHH
Confidence 345667777777777777777777777654 44566777777777777777777777776654311 111
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047932 216 -VVTYNSLIHCFSHADDWNEAKRLFIKMMD 244 (598)
Q Consensus 216 -~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 244 (598)
..+|..+..++...|++++|++.|++.+.
T Consensus 82 ~a~~~~~lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 82 IAKAMSRAGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 12455555556666666666666666554
No 156
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.46 E-value=2.6e-07 Score=80.20 Aligned_cols=168 Identities=13% Similarity=0.073 Sum_probs=104.4
Q ss_pred cCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhccHHHHHHHHHH
Q 047932 51 NLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCRIMEAAALFTK 130 (598)
Q Consensus 51 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~a~~~~~~ 130 (598)
..|++++|.+.|+......+. ....+..++..+.+.|++++|+..|++++... |+...+.... ...- .
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~---~~~~----~- 83 (198)
T 2fbn_A 16 NLYFQGAKKSIYDYTDEEKVQ--SAFDIKEEGNEFFKKNEINEAIVKYKEALDFF--IHTEEWDDQI---LLDK----K- 83 (198)
T ss_dssp ------CCCSGGGCCHHHHHH--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--TTCTTCCCHH---HHHH----H-
T ss_pred hhhhccccCchhhCCHHHHHH--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--hcccccchhh---HHHH----H-
Confidence 455666666666544433332 55678888889999999999999999988752 2211000000 0000 0
Q ss_pred HHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 047932 131 LRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDE 210 (598)
Q Consensus 131 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 210 (598)
. .....++..+..+|.+.|++++|+..++++.... +.+...+..+..+|...|++++|.+.|++....
T Consensus 84 -~----~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 84 -K----NIEISCNLNLATCYNKNKDYPKAIDHASKVLKID-------KNNVKALYKLGVANMYFGFLEEAKENLYKAASL 151 (198)
T ss_dssp -H----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred -H----HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-------cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 0 0013567788888889999999999999988865 556788888888899999999999999888775
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHH
Q 047932 211 NINPNVVTYNSLIHCFSHADDWNEAK-RLFIKMM 243 (598)
Q Consensus 211 ~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~ 243 (598)
.. .+...+..+..++...++.+++. ..+..+.
T Consensus 152 ~p-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f 184 (198)
T 2fbn_A 152 NP-NNLDIRNSYELCVNKLKEARKKDKLTFGGMF 184 (198)
T ss_dssp ST-TCHHHHHHHHHHHHHHHHHHC----------
T ss_pred CC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 32 25667777777776666665555 4444443
No 157
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.45 E-value=6e-06 Score=65.31 Aligned_cols=96 Identities=10% Similarity=-0.077 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 047932 392 YIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGL 471 (598)
Q Consensus 392 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 471 (598)
..+..+...+.+.|++++|+..|+++++.. +.+...|..+..++...|++++|+..+++..+.. +.+...|..+..++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 345555566666666666666666666543 3356666666666667777777777776666642 22355666666666
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 047932 472 CNDGQMDKAHDLFLDMEA 489 (598)
Q Consensus 472 ~~~g~~~~A~~~~~~~~~ 489 (598)
...|++++|+..|++.++
T Consensus 83 ~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 83 IAVKEYASALETLDAART 100 (126)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHH
Confidence 667777777777766665
No 158
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.42 E-value=2.9e-06 Score=68.86 Aligned_cols=98 Identities=12% Similarity=0.029 Sum_probs=73.9
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHH
Q 047932 140 VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTY 219 (598)
Q Consensus 140 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 219 (598)
...+..+...+.+.|++++|+..|+++...+ +.+...|..+..++.+.|++++|+..|+.....+. .+...+
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~ 89 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLD-------HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDI-NEPRFP 89 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-------CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHH
Confidence 3455667777788888888888888887765 55677777888888888888888888888777543 356677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047932 220 NSLIHCFSHADDWNEAKRLFIKMMDQ 245 (598)
Q Consensus 220 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 245 (598)
..+..+|...|++++|...|+..++.
T Consensus 90 ~~lg~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 90 FHAAECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 77788888888888888888877664
No 159
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.41 E-value=9.7e-06 Score=62.91 Aligned_cols=98 Identities=19% Similarity=0.126 Sum_probs=61.8
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHH
Q 047932 140 VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTY 219 (598)
Q Consensus 140 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 219 (598)
...+..++..+...|++++|...|++..... +.+...+..+...+...|++++|...+++...... .+...+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~ 75 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-------PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP-DWGKGY 75 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-------CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCc-ccHHHH
Confidence 3455566666667777777777777766653 34566666666666666777777776666665422 245566
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047932 220 NSLIHCFSHADDWNEAKRLFIKMMDQ 245 (598)
Q Consensus 220 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 245 (598)
..+..++...|++++|.+.+++..+.
T Consensus 76 ~~~a~~~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 76 SRKAAALEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 66666666666666666666666554
No 160
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.39 E-value=3.9e-06 Score=67.55 Aligned_cols=98 Identities=11% Similarity=-0.077 Sum_probs=62.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 047932 390 DTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIH 469 (598)
Q Consensus 390 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 469 (598)
+...+..+...+...|++++|...|+.+.... +.+...+..+..++...|++++|...+++..+.. +.+...+..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHH
Confidence 45556666666666666666666666666543 3355666666666777777777777777666642 224556666666
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 047932 470 GLCNDGQMDKAHDLFLDMEA 489 (598)
Q Consensus 470 ~~~~~g~~~~A~~~~~~~~~ 489 (598)
++...|++++|+..|+++++
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHH
Confidence 67777777777777766664
No 161
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.39 E-value=1.6e-06 Score=86.34 Aligned_cols=123 Identities=11% Similarity=0.066 Sum_probs=100.6
Q ss_pred cCCcccccCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhccHHH
Q 047932 44 SSGQGDINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCRIME 123 (598)
Q Consensus 44 ~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~ 123 (598)
..+..+.+.|++++|++.|+++++.+|. +..+|..++.++.+.|++++|+..|+++++..
T Consensus 11 ~lg~~~~~~g~~~~A~~~~~~Al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~------------------ 70 (477)
T 1wao_1 11 TQANDYFKAKDYENAIKFYSQAIELNPS--NAIYYGNRSLAYLRTECYGYALGDATRAIELD------------------ 70 (477)
T ss_dssp SSSSSTTTTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC------------------
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhCCc--cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC------------------
Confidence 4577788999999999999999999887 89999999999999999999999999998752
Q ss_pred HHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHH--HHhcCCHHHHH
Q 047932 124 AAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDG--VCKEGFVDKAM 201 (598)
Q Consensus 124 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~ 201 (598)
+.+..++..+..+|.+.|++++|.+.|+++.+.. +.+...+..+..+ +.+.|++++|+
T Consensus 71 -------------p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-------p~~~~~~~~l~~~~~~~~~g~~~~A~ 130 (477)
T 1wao_1 71 -------------KKYIKGYYRRAASNMALGKFRAALRDYETVVKVK-------PHDKDAKMKYQECNKIVKQKAFERAI 130 (477)
T ss_dssp -------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-------TTCTTHHHHHHHHHHHHHHHHHCCC-
T ss_pred -------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2356788899999999999999999999999875 3445566666665 88889999999
Q ss_pred HHHHH
Q 047932 202 ELFLQ 206 (598)
Q Consensus 202 ~~~~~ 206 (598)
+.+++
T Consensus 131 ~~~~~ 135 (477)
T 1wao_1 131 AGDEH 135 (477)
T ss_dssp -----
T ss_pred ccccc
Confidence 99883
No 162
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.36 E-value=1e-05 Score=70.05 Aligned_cols=129 Identities=13% Similarity=-0.001 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 047932 393 IYNTFIDGLCKNGFVLEALELFCAIGNSKYELD---------------IISYSCLIDGLCKIGKLETAWELFQSLSRVGL 457 (598)
Q Consensus 393 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 457 (598)
.+..+...+...|++++|...|+++........ ..++..+..+|...|++++|+..+++..+..
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~- 118 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID- 118 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-
Confidence 344455555556666666666665554321100 2567777888888888888888888887752
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccccc-hhHHHHHHH
Q 047932 458 LPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFIRNNETSKSS-RGKLMSQMS 525 (598)
Q Consensus 458 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~ 525 (598)
+.+...+..+..++...|++++|+..|++.++.. +.+...+..+..++...|+.+++. . .+..+.
T Consensus 119 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~f 184 (198)
T 2fbn_A 119 KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARKKDKL--TFGGMF 184 (198)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC------------
T ss_pred cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHHHHHH--HHHHHh
Confidence 2356777778888888888888888888887754 446677777777777777776666 3 444443
No 163
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.35 E-value=2e-05 Score=64.15 Aligned_cols=111 Identities=12% Similarity=-0.082 Sum_probs=68.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 047932 390 DTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELD----IISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYN 465 (598)
Q Consensus 390 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 465 (598)
+...+..+...+...|++++|...|+++.+.. |+ ...+..+..+|...|++++|+..+++..+.. +.+...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHH
Confidence 45555566666666666666666666666542 33 4566666667777777777777777766542 22455666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 047932 466 IMIHGLCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIML 504 (598)
Q Consensus 466 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 504 (598)
.+..++...|++++|...|++.++.. +.+...+..+..
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLE-PKNKVFQEALRN 141 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC-SSCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHH
Confidence 66677777777777777777776643 334444444433
No 164
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.35 E-value=8.3e-06 Score=68.07 Aligned_cols=99 Identities=12% Similarity=0.036 Sum_probs=71.9
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHH
Q 047932 139 DVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVT 218 (598)
Q Consensus 139 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 218 (598)
+...+..+...+.+.|++++|+..|++..+.. +.+...|..+..+|.+.|++++|+..|++...... .+...
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~ 81 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-------PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDP-KYSKA 81 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHH
Confidence 34566777777777888888888888777764 44667777777777777888888777777776532 25667
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047932 219 YNSLIHCFSHADDWNEAKRLFIKMMDQ 245 (598)
Q Consensus 219 ~~~l~~~~~~~~~~~~a~~~~~~~~~~ 245 (598)
|..+..+|...|++++|...|++.++.
T Consensus 82 ~~~lg~~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 82 WSRLGLARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 777777777777777777777777664
No 165
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.35 E-value=8.9e-06 Score=67.88 Aligned_cols=99 Identities=10% Similarity=-0.031 Sum_probs=66.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 047932 390 DTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIH 469 (598)
Q Consensus 390 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 469 (598)
+...+..+...+...|++++|+..|+++++.. +.+...|..+..+|...|++++|+..+++.++.. +.+...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 34556666666777777777777777766553 3356667777777777777777777777776642 224666777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHC
Q 047932 470 GLCNDGQMDKAHDLFLDMEAK 490 (598)
Q Consensus 470 ~~~~~g~~~~A~~~~~~~~~~ 490 (598)
++...|++++|+..|++.++.
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHh
Confidence 777777777777777777654
No 166
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.34 E-value=5.2e-06 Score=65.96 Aligned_cols=113 Identities=10% Similarity=0.025 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC--CCC----HHHHH
Q 047932 392 YIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGL--LPN----VVTYN 465 (598)
Q Consensus 392 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~p~----~~~~~ 465 (598)
..+..+...+...|++++|...|+++.... +.+...+..+..++...|++++|...++++.+... .++ ..++.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 345556666667777777777777766543 33566667777777777777777777777655321 111 55666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 047932 466 IMIHGLCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFI 507 (598)
Q Consensus 466 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 507 (598)
.+..++...|++++|.+.|+++.+. .|+......+..+..
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~ 123 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQQAEK 123 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHHHHHH
Confidence 6777777777777777777777764 346555555544443
No 167
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.34 E-value=5.3e-06 Score=63.78 Aligned_cols=97 Identities=9% Similarity=-0.014 Sum_probs=48.9
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC--CHHH
Q 047932 141 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINP--NVVT 218 (598)
Q Consensus 141 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~ 218 (598)
..+..++..+.+.|++++|...|+++.+.. +.+...+..+...+...|++++|.+.+++..+.. +. +...
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~ 78 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLD-------PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDV 78 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-------cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHH
Confidence 344445555555555555555555555443 3344455555555555555555555555555431 11 3444
Q ss_pred HHHHHHHHHhc-CCHHHHHHHHHHHHHC
Q 047932 219 YNSLIHCFSHA-DDWNEAKRLFIKMMDQ 245 (598)
Q Consensus 219 ~~~l~~~~~~~-~~~~~a~~~~~~~~~~ 245 (598)
+..+..++... |++++|.+.++.....
T Consensus 79 ~~~l~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 79 WAAKADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHHHHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHhhc
Confidence 45555555555 5555555555555443
No 168
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.33 E-value=1.1e-05 Score=64.79 Aligned_cols=98 Identities=13% Similarity=-0.009 Sum_probs=51.4
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHH
Q 047932 139 DVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVT 218 (598)
Q Consensus 139 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 218 (598)
+...+..+...+...|++++|...|+...... +.+...|..+...+...|++++|...++....... .+...
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~ 79 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-------PLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKA 79 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-------cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-hhHHH
Confidence 34455555555555555555555555555543 33445555555555555555555555555554321 14445
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047932 219 YNSLIHCFSHADDWNEAKRLFIKMMD 244 (598)
Q Consensus 219 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 244 (598)
+..+..++...|++++|...|++..+
T Consensus 80 ~~~l~~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 80 HFFLGQCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 55555555555555555555555443
No 169
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.31 E-value=5e-06 Score=66.06 Aligned_cols=98 Identities=11% Similarity=0.148 Sum_probs=64.4
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC--CCC---
Q 047932 141 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENI--NPN--- 215 (598)
Q Consensus 141 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~--- 215 (598)
..+..++..+...|++++|...|++..... +.+...+..+...+...|++++|...++.+..... .++
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 77 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-------PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQ 77 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-------CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHH
Confidence 456667777777777777777777777654 44566677777777777777777777777665421 111
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047932 216 -VVTYNSLIHCFSHADDWNEAKRLFIKMMDQ 245 (598)
Q Consensus 216 -~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 245 (598)
..++..+..++...|++++|.+.|++..+.
T Consensus 78 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 78 IAKAYARIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 455666666666667777777776666654
No 170
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.30 E-value=4.5e-06 Score=65.44 Aligned_cols=90 Identities=7% Similarity=-0.004 Sum_probs=42.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 047932 432 LIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFIRNNE 511 (598)
Q Consensus 432 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 511 (598)
+...+...|++++|+..+++.++.. +.+...|..+..++...|++++|+..|+++++.. +.+...+..+..+|...|+
T Consensus 23 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~~g~ 100 (121)
T 1hxi_A 23 EGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHN 100 (121)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 3444444555555555555554431 1134444444455555555555555555554432 2334444445555555555
Q ss_pred ccccchhHHHHHHH
Q 047932 512 TSKSSRGKLMSQMS 525 (598)
Q Consensus 512 ~~~A~~~~~~~~~~ 525 (598)
+++|.. .+++++
T Consensus 101 ~~~A~~--~~~~al 112 (121)
T 1hxi_A 101 ANAALA--SLRAWL 112 (121)
T ss_dssp HHHHHH--HHHHHH
T ss_pred HHHHHH--HHHHHH
Confidence 555555 555544
No 171
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.30 E-value=1.2e-06 Score=83.16 Aligned_cols=151 Identities=9% Similarity=-0.107 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 047932 391 TYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHG 470 (598)
Q Consensus 391 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 470 (598)
...+..+...+.+.|++++|...|++++... |+... +...++.+++...+. ...|..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 4455566666777777788887777776542 22221 112233333332211 1367888889
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccccchhHHHHHHHhcccCCCCCChHHHHH----H-HHH
Q 047932 471 LCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFIRNNETSKSSRGKLMSQMSSCWSMCFQPKTLICSI----S-IML 545 (598)
Q Consensus 471 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~----~-~~~ 545 (598)
|.+.|++++|+..+++.++.. +.+...|..+..+|...|++++|.. .++++.+. .|+...... + ...
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~--~l~~al~l-----~p~~~~a~~~L~~l~~~~ 311 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARD--DFRKAQKY-----APDDKAIRRELRALAEQE 311 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHH--HHHHTTC------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHH--HHHHHHHH-----CCCCHHHHHHHHHHHHHH
Confidence 999999999999999998865 5578889999999999999999999 99999844 565443332 1 233
Q ss_pred hCCCCCChhhHHHhhhcCccccc
Q 047932 546 QKDMSPGDTMFSTALLMDPDCSC 568 (598)
Q Consensus 546 ~~~~~~a~~~~~~~l~~~P~~~~ 568 (598)
.+..+.+...|++++...|+++.
T Consensus 312 ~~~~~~a~~~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 312 KALYQKQKEMYKGIFKGKDEGGA 334 (338)
T ss_dssp -----------------------
T ss_pred HHHHHHHHHHHHHhhCCCCCCCC
Confidence 56778888999999999998864
No 172
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.29 E-value=1.7e-05 Score=78.29 Aligned_cols=55 Identities=16% Similarity=0.039 Sum_probs=45.0
Q ss_pred cccCCChHHHHHHHHHHHHcCCCCCCH---------------HHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047932 49 DINLITPNEALCIFDYMLRMHPSPPPV---------------SSFNILFGCLAKNKHYDTVLSLFKRLNS 103 (598)
Q Consensus 49 ~~~~g~~~~A~~~~~~~~~~~~~~~~~---------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 103 (598)
+.+.|++++|++.|..++...+...+. .++..++..|...|++++|.+.+.++.+
T Consensus 14 l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~ 83 (434)
T 4b4t_Q 14 LVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTE 83 (434)
T ss_dssp HHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHH
T ss_pred HHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 346899999999999999877653221 2477899999999999999999988764
No 173
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.29 E-value=6.2e-06 Score=64.66 Aligned_cols=96 Identities=7% Similarity=-0.041 Sum_probs=66.3
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHH
Q 047932 142 TYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTYNS 221 (598)
Q Consensus 142 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 221 (598)
.+..+...+.+.|++++|+..|+++.+.+ +.+...|..+..++...|++++|+..|++..+.... +...+..
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-------P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~ 90 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKE-------PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAA 90 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHS-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHH
Confidence 34556666777777777777777777754 456677777777777777777777777777665322 5566677
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC
Q 047932 222 LIHCFSHADDWNEAKRLFIKMMDQ 245 (598)
Q Consensus 222 l~~~~~~~~~~~~a~~~~~~~~~~ 245 (598)
+..++...|++++|+..+++.++.
T Consensus 91 la~~~~~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 91 LAVSHTNEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Confidence 777777777777777777776653
No 174
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.28 E-value=9.6e-06 Score=82.24 Aligned_cols=163 Identities=10% Similarity=0.001 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-
Q 047932 407 VLEALELFCAIGNSKYELDIISYSCLIDGLCKIGK----------LETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDG- 475 (598)
Q Consensus 407 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g- 475 (598)
.++|+..++.++... +-+..+|+.-..++...|+ ++++++.++.+.+... -+..+|+.-...+.+.|
T Consensus 45 ~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~p-K~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 45 DESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP-KSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTCSS
T ss_pred CHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHccc
Confidence 345666666666554 2345556555555555555 6777777777766532 25666666666666666
Q ss_pred -CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CccccchhHHHHHHHhcccCCCCCCh-HHHHH---HHHHh---
Q 047932 476 -QMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFIRNN-ETSKSSRGKLMSQMSSCWSMCFQPKT-LICSI---SIMLQ--- 546 (598)
Q Consensus 476 -~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~p~~-~~~~~---~~~~~--- 546 (598)
+++++++.++++.+.. +-|...|+.-..++.+.| .++++++ .++++++. .|+. ..|.. ++...
T Consensus 123 ~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~--~~~~~I~~-----~p~n~saW~~r~~ll~~l~~~ 194 (567)
T 1dce_A 123 PNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELA--FTDSLITR-----NFSNYSSWHYRSCLLPQLHPQ 194 (567)
T ss_dssp CCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHH--HHHTTTTT-----TCCCHHHHHHHHHHHHHHSCC
T ss_pred ccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHH--HHHHHHHH-----CCCCccHHHHHHHHHHhhccc
Confidence 5577777777777665 456677776666666666 6667777 77777644 4433 33333 22211
Q ss_pred -----------CCCCCChhhHHHhhhcCccccchhhHhhhhCCC
Q 047932 547 -----------KDMSPGDTMFSTALLMDPDCSCDLESLIHNTDL 579 (598)
Q Consensus 547 -----------~~~~~a~~~~~~~l~~~P~~~~~~~~l~~~~~~ 579 (598)
+.+++|.+.++++++++|+|..++.-+-|....
T Consensus 195 ~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~ 238 (567)
T 1dce_A 195 PDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGR 238 (567)
T ss_dssp CCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSC
T ss_pred ccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhc
Confidence 234667788889999999999987777555543
No 175
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.28 E-value=1e-05 Score=62.18 Aligned_cols=99 Identities=13% Similarity=0.015 Sum_probs=62.3
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHhhHHHH
Q 047932 180 DTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHP--NVVTFSVI 257 (598)
Q Consensus 180 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l 257 (598)
+...+..+...+...|++++|...|+++.+... .+...+..+..++...|++++|...+++..+.. +. +...+..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l 82 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDP-EESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAK 82 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHH
Confidence 455566666667777777777777776665422 245566666666666777777777776666542 22 34556666
Q ss_pred HHHHHhC-CCHHHHHHHHHHHHhc
Q 047932 258 VDELCKN-GKMEEASRLLDLMIQI 280 (598)
Q Consensus 258 ~~~~~~~-g~~~~a~~~~~~~~~~ 280 (598)
..++... |++++|.+.++.+...
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhc
Confidence 6666666 6666666666666654
No 176
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.28 E-value=6e-07 Score=89.05 Aligned_cols=161 Identities=11% Similarity=-0.005 Sum_probs=112.0
Q ss_pred cCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhccHHHHHHHHHH
Q 047932 51 NLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCRIMEAAALFTK 130 (598)
Q Consensus 51 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~a~~~~~~ 130 (598)
..+++++|+..|+......|. ....|..+...+.+.|++++|+..|+++++.. |+...+ ..+... +
T Consensus 246 ~l~~~~~A~~~~~~~~~~~~~--~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~------~~~~~~----~ 311 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDTKEKLE--QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL--EMEYGL------SEKESK----A 311 (457)
T ss_dssp EEEEEECCCCGGGSCHHHHHH--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--TTCCSC------CHHHHH----H
T ss_pred hhhhcccCcchhhcCHHHHHH--HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccC------ChHHHH----H
Confidence 345667788777777666654 67889999999999999999999999998642 221000 000000 0
Q ss_pred HHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 047932 131 LRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDE 210 (598)
Q Consensus 131 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 210 (598)
.. .....+|..+..+|.+.|++++|+..|++++..+ +.+...|..+..+|...|++++|+..|+++.+.
T Consensus 312 ~~----~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-------p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l 380 (457)
T 1kt0_A 312 SE----SFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD-------SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 380 (457)
T ss_dssp HH----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HH----HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-------CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 00 0124567788888888888888888888888865 556778888888888888888888888888875
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 047932 211 NINPNVVTYNSLIHCFSHADDWNEAKR 237 (598)
Q Consensus 211 ~~~~~~~~~~~l~~~~~~~~~~~~a~~ 237 (598)
.. .+...+..+..++...++.+++.+
T Consensus 381 ~P-~~~~a~~~l~~~~~~~~~~~~a~~ 406 (457)
T 1kt0_A 381 NP-QNKAARLQISMCQKKAKEHNERDR 406 (457)
T ss_dssp C-----CHHHHHHHHHHHHHHHHHHHH
T ss_pred CC-CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 32 255677777777777777766653
No 177
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.25 E-value=1e-06 Score=71.26 Aligned_cols=107 Identities=6% Similarity=-0.137 Sum_probs=74.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-------CH-----HHHHHHHHHHHhcCCccccchhHHHHHHHhc--cc
Q 047932 464 YNIMIHGLCNDGQMDKAHDLFLDMEAKGVEP-------DC-----VIFNTIMLGFIRNNETSKSSRGKLMSQMSSC--WS 529 (598)
Q Consensus 464 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-------~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~ 529 (598)
+......+...|++++|+..|++.++.. +. +. ..|..+..++.+.|++++|+. .+++.++. ..
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~-p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~--~~~kAL~l~n~~ 90 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEIS-HTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALH--SADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHH-TTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHH--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhC-CCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHH--HHHHHHHhhhcc
Confidence 4445555556666666666666666532 11 22 378888888888888888888 88888732 00
Q ss_pred CCCCCChHHHH----H----HHHHhCCCCCChhhHHHhhhcCccccchhhHh
Q 047932 530 MCFQPKTLICS----I----SIMLQKDMSPGDTMFSTALLMDPDCSCDLESL 573 (598)
Q Consensus 530 ~~~~p~~~~~~----~----~~~~~~~~~~a~~~~~~~l~~~P~~~~~~~~l 573 (598)
-.+.|+....+ . .+...|++++|+..|+++++++|++..++..+
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~ 142 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGK 142 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTH
T ss_pred ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 01178765444 2 66778999999999999999999999987665
No 178
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.24 E-value=6.1e-05 Score=74.28 Aligned_cols=197 Identities=10% Similarity=-0.017 Sum_probs=95.6
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhcCCCcCH----------------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC
Q 047932 258 VDELCKNGKMEEASRLLDLMIQIGVHPNT----------------FVYNTLMDGFCLTGRVNHAKELFVSMESNGC-MHD 320 (598)
Q Consensus 258 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----------------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~ 320 (598)
.+.+.+.|++++|++.|..+++....... ..+..+...|...|++++|.+.+..+..... ..+
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 45566777888888887777765322110 1245556666666666666666665543210 011
Q ss_pred h----hhHHHHHHHHHhcCCHHHHHHHHHHHccC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC----C-
Q 047932 321 V----VSYTTLINGYCKTKNVEEALNLYRKMLPK----GIRP-TVVTYSTLFLGLFEVHQVEHALKLFDEMQHN----D- 386 (598)
Q Consensus 321 ~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~- 386 (598)
. ...+.+...+...|++++|..++...... +..+ -..++..+...+...|++++|..+++++... +
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 1 11122222333455566666666554321 1111 1334455555556666666666665554432 1
Q ss_pred CCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhC----CCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 047932 387 VAADTYIYNTFIDGLCKNGFVLEALELFCAIGNS----KYELD--IISYSCLIDGLCKIGKLETAWELFQSLSR 454 (598)
Q Consensus 387 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 454 (598)
.+....++..++..|...|++++|..++++.... ..++. ...+..+...+...|++++|...|.+..+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 0111334555555555566666666555554321 10111 12334444444555555555555555443
No 179
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.24 E-value=2.8e-05 Score=63.26 Aligned_cols=98 Identities=13% Similarity=0.003 Sum_probs=59.9
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCC----HhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC
Q 047932 139 DVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPD----TVTYNTIIDGVCKEGFVDKAMELFLQMKDENINP 214 (598)
Q Consensus 139 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 214 (598)
+...+..+...+...|++++|...|++..+.. |+ ...|..+...|...|++++|+..++...... +.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--------~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~ 97 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLD--------ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GG 97 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--------CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SC
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--------ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-cc
Confidence 44556666666666777777777777666643 33 4556666666666666666666666665542 22
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047932 215 NVVTYNSLIHCFSHADDWNEAKRLFIKMMDQ 245 (598)
Q Consensus 215 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 245 (598)
+...+..+..++...|++++|...|++..+.
T Consensus 98 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 98 DVKALYRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 4555566666666666666666666666554
No 180
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.21 E-value=4.2e-06 Score=65.23 Aligned_cols=86 Identities=15% Similarity=0.060 Sum_probs=52.7
Q ss_pred cCCHHHHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 047932 404 NGFVLEALELFCAIGNSK--YELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAH 481 (598)
Q Consensus 404 ~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 481 (598)
.|++++|+..|+++++.+ -+.+...+..+..+|...|++++|+..+++..+.. +-+...+..+..++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 456666667776666542 12234566667777777777777777777776642 224556666677777777777777
Q ss_pred HHHHHHHHC
Q 047932 482 DLFLDMEAK 490 (598)
Q Consensus 482 ~~~~~~~~~ 490 (598)
..+++.+..
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 777776654
No 181
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.19 E-value=2.5e-05 Score=79.19 Aligned_cols=186 Identities=10% Similarity=-0.027 Sum_probs=138.5
Q ss_pred CHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcC
Q 047932 371 QVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGF----------VLEALELFCAIGNSKYELDIISYSCLIDGLCKIG 440 (598)
Q Consensus 371 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 440 (598)
..++|.+.++++...+ +-+..+|+.-..++...|+ +++++.+++.+.+.. +.+..+|..-..++.+.+
T Consensus 44 ~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 44 LDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcc
Confidence 3456778888877764 4456667666666666666 889999999998766 448888988888888888
Q ss_pred --CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--------
Q 047932 441 --KLETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDG-QMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFIRN-------- 509 (598)
Q Consensus 441 --~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-------- 509 (598)
+++++++.++++.+...+ +..+|+.-...+.+.| .++++++.++++++.. +-|...|+....++.+.
T Consensus 122 ~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 122 EPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp SCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhcccccccc
Confidence 779999999999987533 7888888888888888 8999999999998875 55788888887777663
Q ss_pred ------CCccccchhHHHHHHHhcccCCCCCCh-HHHHH---HHHHhCCCCC------------ChhhHHHhhhcCcccc
Q 047932 510 ------NETSKSSRGKLMSQMSSCWSMCFQPKT-LICSI---SIMLQKDMSP------------GDTMFSTALLMDPDCS 567 (598)
Q Consensus 510 ------g~~~~A~~~~~~~~~~~~~~~~~~p~~-~~~~~---~~~~~~~~~~------------a~~~~~~~l~~~P~~~ 567 (598)
+.++++++ .+++++.. .|+. ..|.. ++...+..++ |+..|.++++++|+.+
T Consensus 200 ~~~~~~~~~~eel~--~~~~ai~~-----~P~~~saW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~f~~~i~~~~~~~ 272 (567)
T 1dce_A 200 QGRLPENVLLKELE--LVQNAFFT-----DPNDQSAWFYHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMG 272 (567)
T ss_dssp CCSSCHHHHHHHHH--HHHHHHHH-----CSSCSHHHHHHHHHHSCCCCCSCEEEEEEETTTTEEEEEEEEEECTTBTTB
T ss_pred cccccHHHHHHHHH--HHHHHHhh-----CCCCccHHHHHHHHHhcCCCccceeeeeeccCCceEEEEeccceecccccc
Confidence 45678888 89888855 5654 44444 2222233333 5566899999999863
No 182
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.19 E-value=1.5e-05 Score=66.33 Aligned_cols=66 Identities=15% Similarity=0.055 Sum_probs=52.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 047932 425 DIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEAKG 491 (598)
Q Consensus 425 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 491 (598)
+..+|..+..+|.+.|++++|+..+++.++.+ +.+...|..+..++...|++++|+..|++.++..
T Consensus 62 ~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 62 NIPLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 34577888888888888888888888888753 2357788888888888899999999888888753
No 183
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.19 E-value=5.7e-05 Score=59.73 Aligned_cols=95 Identities=11% Similarity=-0.052 Sum_probs=63.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCH---hHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC---H
Q 047932 143 YNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDT---VTYNTIIDGVCKEGFVDKAMELFLQMKDENINPN---V 216 (598)
Q Consensus 143 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~ 216 (598)
+..+...+...|++++|...|+.+.+.. +.+. ..+..+..++.+.|++++|...|+.+...... + .
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~ 76 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELY-------PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAA 76 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-------SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHC-------CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccH
Confidence 3445666777777777777777777654 2223 46666777777777777777777777664322 2 4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047932 217 VTYNSLIHCFSHADDWNEAKRLFIKMMDQ 245 (598)
Q Consensus 217 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 245 (598)
..+..+..++...|++++|...|+.+.+.
T Consensus 77 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 77 GGLLKLGLSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 55666677777777777777777777665
No 184
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.17 E-value=1.5e-05 Score=78.93 Aligned_cols=97 Identities=11% Similarity=0.025 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 047932 426 IISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLG 505 (598)
Q Consensus 426 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 505 (598)
..+|..+..+|.+.|++++|+..++++++.. +.+...|..+..+|...|++++|+..|+++++.. +.+...+..+..+
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~ 394 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMC 394 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 4566677777777777777777777776643 2246667777777777777777777777777653 3345566666667
Q ss_pred HHhcCCccccchhHHHHHHH
Q 047932 506 FIRNNETSKSSRGKLMSQMS 525 (598)
Q Consensus 506 ~~~~g~~~~A~~~~~~~~~~ 525 (598)
+.+.|+.+++.+ ..++.|.
T Consensus 395 ~~~~~~~~~a~~-~~~~~~f 413 (457)
T 1kt0_A 395 QKKAKEHNERDR-RIYANMF 413 (457)
T ss_dssp HHHHHHHHHHHH-HHHHHC-
T ss_pred HHHHHHHHHHHH-HHHHHHH
Confidence 777776665553 1444443
No 185
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.16 E-value=8.1e-05 Score=58.83 Aligned_cols=92 Identities=13% Similarity=0.022 Sum_probs=55.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhCCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHH
Q 047932 397 FIDGLCKNGFVLEALELFCAIGNSKYELDI---ISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPN---VVTYNIMIHG 470 (598)
Q Consensus 397 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~ 470 (598)
+...+...|++++|...|+.+.+... .+. ..+..+..++...|++++|...++++.+.... + ...+..+..+
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la~~ 85 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYP-NGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCS-SSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCC-CCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHH
Confidence 44455666666666666666665321 122 35556666666777777777777766654211 2 4455666666
Q ss_pred HHhcCCHHHHHHHHHHHHHC
Q 047932 471 LCNDGQMDKAHDLFLDMEAK 490 (598)
Q Consensus 471 ~~~~g~~~~A~~~~~~~~~~ 490 (598)
+...|++++|+..|+++++.
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 66777777777777776654
No 186
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.15 E-value=7.5e-06 Score=81.50 Aligned_cols=118 Identities=8% Similarity=-0.089 Sum_probs=70.6
Q ss_pred HHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 047932 400 GLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDK 479 (598)
Q Consensus 400 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 479 (598)
.+.+.|++++|...|+++.+.. +.+..+|..+..+|...|++++|+..+++..+.. +.+...+..+..+|...|++++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 3445666777777776666543 3356666777777777777777777777776642 2245666666777777777777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHH--HHhcCCccccchhHHHH
Q 047932 480 AHDLFLDMEAKGVEPDCVIFNTIMLG--FIRNNETSKSSRGKLMS 522 (598)
Q Consensus 480 A~~~~~~~~~~~~~p~~~~~~~l~~~--~~~~g~~~~A~~~~~~~ 522 (598)
|++.|+++++.. +.+...+..+..+ +.+.|++++|++ .++
T Consensus 93 A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~--~~~ 134 (477)
T 1wao_1 93 ALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIA--GDE 134 (477)
T ss_dssp HHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-------
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhc--ccc
Confidence 777777776643 2233444444444 666677777777 666
No 187
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.12 E-value=3.7e-06 Score=65.55 Aligned_cols=87 Identities=9% Similarity=-0.022 Sum_probs=71.2
Q ss_pred cCCChHHHHHHHHHHHHcC---CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhccHHHHHHH
Q 047932 51 NLITPNEALCIFDYMLRMH---PSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCRIMEAAAL 127 (598)
Q Consensus 51 ~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~a~~~ 127 (598)
..|++++|+..|+++++.+ |. ++.+|..++.++.+.|++++|+..|+++++.. |
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~--~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p------------------- 58 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKD--LAECYLGLGSTFRTLGEYRKAEAVLANGVKQF--P------------------- 58 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHH--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T-------------------
T ss_pred CCCcHHHHHHHHHHHHHcCCCCcc--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--C-------------------
Confidence 4688999999999999874 54 77889999999999999999999999988652 2
Q ss_pred HHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 047932 128 FTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGN 170 (598)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 170 (598)
.+..++..+..++.+.|++++|+..|++.....
T Consensus 59 ----------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 91 (117)
T 3k9i_A 59 ----------NHQALRVFYAMVLYNLGRYEQGVELLLKIIAET 91 (117)
T ss_dssp ----------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred ----------CchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 256778889999999999999999999998864
No 188
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.10 E-value=2.2e-05 Score=64.97 Aligned_cols=96 Identities=11% Similarity=-0.068 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhCC----CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCC-CHH
Q 047932 393 IYNTFIDGLCKNGFVLEALELFCAIGNSK----YEL-DIISYSCLIDGLCKIGKLETAWELFQSLSRV----GLLP-NVV 462 (598)
Q Consensus 393 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~~ 462 (598)
++..+...+...|++++|...+++..... ..+ ...++..+..++...|++++|...+++..+. +..+ ...
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 34444445555555555555555443210 000 1234445555555555666655555554431 1000 022
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047932 463 TYNIMIHGLCNDGQMDKAHDLFLDME 488 (598)
Q Consensus 463 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 488 (598)
.+..+...+...|++++|.+.+++..
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 34445555555566666666655554
No 189
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.09 E-value=2.7e-05 Score=74.57 Aligned_cols=91 Identities=9% Similarity=-0.024 Sum_probs=65.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 047932 425 DIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIML 504 (598)
Q Consensus 425 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 504 (598)
+..+|..+..+|.+.|++++|+..++++++.. +.+...|..+..+|...|++++|+..|+++++.. +.+...+..+..
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~ 349 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLK 349 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 45567777888888888888888888887753 2256677778888888888888888888887754 446667777777
Q ss_pred HHHhcCCccccch
Q 047932 505 GFIRNNETSKSSR 517 (598)
Q Consensus 505 ~~~~~g~~~~A~~ 517 (598)
++...++.+++.+
T Consensus 350 ~~~~~~~~~~a~k 362 (370)
T 1ihg_A 350 VKQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7776666655543
No 190
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.08 E-value=2.6e-05 Score=64.50 Aligned_cols=133 Identities=10% Similarity=0.028 Sum_probs=76.9
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----
Q 047932 181 TVTYNTIIDGVCKEGFVDKAMELFLQMKDENIN-PN----VVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVH-PN---- 250 (598)
Q Consensus 181 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~---- 250 (598)
..++..+...+...|++++|...+++....... ++ ..++..+...+...|++++|.+.+++..+.... .+
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 456677778888888888888888777653110 11 135666777777777777777777776542100 01
Q ss_pred HhhHHHHHHHHHhCCCHHHHHHHHHHHHhcC----CC-cCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047932 251 VVTFSVIVDELCKNGKMEEASRLLDLMIQIG----VH-PNTFVYNTLMDGFCLTGRVNHAKELFVSME 313 (598)
Q Consensus 251 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 313 (598)
...+..+..++...|++++|...+++..+.. .. .....+..+...+...|++++|.+.+++..
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 2345556666667777777777666655421 00 012234444455555555555555555443
No 191
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.07 E-value=5.7e-05 Score=62.70 Aligned_cols=105 Identities=11% Similarity=0.009 Sum_probs=62.8
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccc-----------cCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 047932 140 VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVV-----------CKPDTVTYNTIIDGVCKEGFVDKAMELFLQMK 208 (598)
Q Consensus 140 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 208 (598)
...+...+..+.+.|++++|+..|.+....-...... .+.+...|..+..+|.+.|++++|+..++...
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 4567888999999999999999999988741000000 01123455555556666666666666666555
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047932 209 DENINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQ 245 (598)
Q Consensus 209 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 245 (598)
... +.+...|..+..+|...|++++|...|++.+..
T Consensus 91 ~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 91 KRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 542 224555555555566666666666666555554
No 192
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.04 E-value=4.9e-05 Score=72.71 Aligned_cols=104 Identities=9% Similarity=-0.030 Sum_probs=56.5
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCc---------cccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 047932 141 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFG---------VVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDEN 211 (598)
Q Consensus 141 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---------~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 211 (598)
..+..+...+.+.|++++|+..|+++.+...... ...+.+...|..+..+|.+.|++++|++.++++.+..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 303 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence 3577888999999999999999999886210000 0001223444445555555555555555555554432
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047932 212 INPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQ 245 (598)
Q Consensus 212 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 245 (598)
. .+...|..+..+|...|++++|+..|++.++.
T Consensus 304 p-~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 304 P-SNTKALYRRAQGWQGLKEYDQALADLKKAQEI 336 (370)
T ss_dssp T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred c-hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 1 13444444444555555555555555544443
No 193
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.00 E-value=1.3e-05 Score=79.11 Aligned_cols=138 Identities=9% Similarity=-0.040 Sum_probs=97.8
Q ss_pred cccCCChHHHHHHHHHHHHc-----CCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhccHH
Q 047932 49 DINLITPNEALCIFDYMLRM-----HPSPP-PVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCRIM 122 (598)
Q Consensus 49 ~~~~g~~~~A~~~~~~~~~~-----~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~ 122 (598)
+..+|++++|..++++++.. ++.+| -..+++.++..|..+|++++|..++++++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~------------------- 379 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVD------------------- 379 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------------------
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-------------------
Confidence 34689999999999998853 33322 345688999999999999999999998763
Q ss_pred HHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCC-CCccccCCCHhHHHHHHHHHHhcCCHHHHH
Q 047932 123 EAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNG-EFGVVCKPDTVTYNTIIDGVCKEGFVDKAM 201 (598)
Q Consensus 123 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 201 (598)
++++....+.+....+++.|...|...|++++|..++++...... .+|...+....+.+.+...+...+.+++|+
T Consensus 380 ----i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae 455 (490)
T 3n71_A 380 ----GYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNE 455 (490)
T ss_dssp ----HHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333222222345799999999999999999999998775320 111112222345566777777888888888
Q ss_pred HHHHHHhh
Q 047932 202 ELFLQMKD 209 (598)
Q Consensus 202 ~~~~~~~~ 209 (598)
.+|..+.+
T Consensus 456 ~~~~~~~~ 463 (490)
T 3n71_A 456 FMYHKMRE 463 (490)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887765
No 194
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.99 E-value=0.00013 Score=58.86 Aligned_cols=96 Identities=13% Similarity=-0.038 Sum_probs=63.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhCCCCC------C-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-----CC
Q 047932 394 YNTFIDGLCKNGFVLEALELFCAIGNSKYEL------D-----IISYSCLIDGLCKIGKLETAWELFQSLSRV-----GL 457 (598)
Q Consensus 394 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~ 457 (598)
+......+.+.|++++|+..|++.++..... + ...|..+..++.+.|++++|+..+++.++. .+
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 3444555666666666666666666432110 2 227777777788888888888888777763 11
Q ss_pred CCC-HHHH----HHHHHHHHhcCCHHHHHHHHHHHHH
Q 047932 458 LPN-VVTY----NIMIHGLCNDGQMDKAHDLFLDMEA 489 (598)
Q Consensus 458 ~p~-~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~ 489 (598)
.|+ ...| .....++...|++++|+..|++.++
T Consensus 94 ~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 94 NQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 454 4566 7777888888888888888888765
No 195
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.97 E-value=2.7e-05 Score=59.68 Aligned_cols=97 Identities=12% Similarity=0.021 Sum_probs=76.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC------HHH
Q 047932 425 DIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPD------CVI 498 (598)
Q Consensus 425 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~------~~~ 498 (598)
+...+..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|++.++++++.. +.+ ...
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~ 80 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT-STAEHVAIRSKL 80 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-SSTTSHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCccHHHHHHHH
Confidence 45667778888888999999999999888753 3357788888889999999999999999988753 333 667
Q ss_pred HHHHHHHHHhcCCccccchhHHHHHHH
Q 047932 499 FNTIMLGFIRNNETSKSSRGKLMSQMS 525 (598)
Q Consensus 499 ~~~l~~~~~~~g~~~~A~~~~~~~~~~ 525 (598)
+..+..++...|+.++|.+ .++++.
T Consensus 81 ~~~~~~~~~~~~~~~~a~~--~~~~~~ 105 (111)
T 2l6j_A 81 QYRLELAQGAVGSVQIPVV--EVDELP 105 (111)
T ss_dssp HHHHHHHHHHHHCCCCCSS--SSSSCS
T ss_pred HHHHHHHHHHHHhHhhhHh--HHHHhH
Confidence 7777888888888888888 666553
No 196
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.94 E-value=1.7e-05 Score=75.11 Aligned_cols=149 Identities=13% Similarity=0.011 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 047932 356 VVTYSTLFLGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDG 435 (598)
Q Consensus 356 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 435 (598)
...+..+...+...|++++|...|.+++.. .|+... +...|+..++...+. ..+|..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 455677778888999999999999998875 333321 222333444333221 1367788889
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCccc
Q 047932 436 LCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLG-FIRNNETSK 514 (598)
Q Consensus 436 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~~~ 514 (598)
|.+.|++++|+..+++.++.. +.+...|..+..+|...|++++|+..|+++++.. +.+...+..+..+ ....+..++
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRELRALAEQEKALYQK 317 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988753 2367788889999999999999999999887653 3344555555555 334566777
Q ss_pred cchhHHHHHHHhc
Q 047932 515 SSRGKLMSQMSSC 527 (598)
Q Consensus 515 A~~~~~~~~~~~~ 527 (598)
+.+ .+++|...
T Consensus 318 a~~--~~~~~l~~ 328 (338)
T 2if4_A 318 QKE--MYKGIFKG 328 (338)
T ss_dssp -------------
T ss_pred HHH--HHHHhhCC
Confidence 888 88888744
No 197
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.92 E-value=0.0005 Score=55.03 Aligned_cols=110 Identities=8% Similarity=-0.079 Sum_probs=67.9
Q ss_pred CHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH----cCCHHHHH
Q 047932 371 QVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCK----IGKLETAW 446 (598)
Q Consensus 371 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~ 446 (598)
++++|..+|++..+.+ .++.. +...|...+..++|..+|++..+.+ +...+..|...|.. .+++++|+
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 4566666666666655 22222 4455555556666666666666554 55566666666666 56677777
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCC
Q 047932 447 ELFQSLSRVGLLPNVVTYNIMIHGLCN----DGQMDKAHDLFLDMEAKG 491 (598)
Q Consensus 447 ~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 491 (598)
..|++..+.| +...+..|...|.. .+++++|.+.|++..+.|
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 7777766643 45556666666666 667777777777776665
No 198
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.89 E-value=5.4e-05 Score=61.02 Aligned_cols=109 Identities=12% Similarity=0.119 Sum_probs=83.8
Q ss_pred ccCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhccHHHHHHHHH
Q 047932 50 INLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCRIMEAAALFT 129 (598)
Q Consensus 50 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~a~~~~~ 129 (598)
.+.+.+++|++.|+.+++.+|. ++..|..+..++...++++.+....+ .+++|+..|+
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~--~aea~~n~G~~l~~l~~~~~g~~al~--------------------~~~eAi~~le 70 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPL--DADNLTRWGGVLLELSQFHSISDAKQ--------------------MIQEAITKFE 70 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHHHHSCHHHHHH--------------------HHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHhcccchhhhhHh--------------------HHHHHHHHHH
Confidence 3456689999999999999997 99999999999999888765544332 1356777777
Q ss_pred HHHHcCCCCCHhhHHHHHHHHHhcC-----------ChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHH
Q 047932 130 KLRVFGCEPDVFTYNTLINGLCRTG-----------HTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIID 189 (598)
Q Consensus 130 ~~~~~~~~~~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~ 189 (598)
+.++.++ .+..+|..+..+|...| ++++|++.|+++++.+ |+...|...+.
T Consensus 71 ~AL~ldP-~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~--------P~~~~y~~al~ 132 (158)
T 1zu2_A 71 EALLIDP-KKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ--------PDNTHYLKSLE 132 (158)
T ss_dssp HHHHHCT-TCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC--------TTCHHHHHHHH
T ss_pred HHHHhCc-CcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhC--------CCCHHHHHHHH
Confidence 7777653 26778999999998874 8999999999999954 66555544443
No 199
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.80 E-value=8.4e-05 Score=57.44 Aligned_cols=82 Identities=13% Similarity=0.041 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhccHHHHHHHHHHHHHcC
Q 047932 56 NEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCRIMEAAALFTKLRVFG 135 (598)
Q Consensus 56 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~a~~~~~~~~~~~ 135 (598)
++|+..|+++++.+|. ++..|..++..+...|++++|+..|++++...
T Consensus 2 ~~a~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------------------------------ 49 (115)
T 2kat_A 2 QAITERLEAMLAQGTD--NMLLRFTLGKTYAEHEQFDAALPHLRAALDFD------------------------------ 49 (115)
T ss_dssp CCHHHHHHHHHTTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------------------
T ss_pred hHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC------------------------------
Confidence 3588899999998886 89999999999999999999999999988642
Q ss_pred CCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 047932 136 CEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGN 170 (598)
Q Consensus 136 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 170 (598)
+.+...|..+..+|...|++++|...|++.....
T Consensus 50 -p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 83 (115)
T 2kat_A 50 -PTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAA 83 (115)
T ss_dssp -TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred -CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 2356678889999999999999999999987743
No 200
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.79 E-value=0.00082 Score=53.74 Aligned_cols=88 Identities=8% Similarity=0.001 Sum_probs=40.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH
Q 047932 187 IIDGVCKEGFVDKAMELFLQMKDENINPNVVTYNSLIHCFSH----ADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELC 262 (598)
Q Consensus 187 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 262 (598)
|...|...+.+++|.+.|++..+.| +...+..|...|.. .+++++|.++|++..+.| +...+..+...|.
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~ 104 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQY 104 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC---CHHHHHHHHHHHH
Confidence 3444444444444555555544432 34444444444444 445555555555544432 3334444444444
Q ss_pred h----CCCHHHHHHHHHHHHhc
Q 047932 263 K----NGKMEEASRLLDLMIQI 280 (598)
Q Consensus 263 ~----~g~~~~a~~~~~~~~~~ 280 (598)
. .+++++|.+++++..+.
T Consensus 105 ~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 105 AGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HTSSSCCCHHHHHHHHHHHHHT
T ss_pred CCCCCCcCHHHHHHHHHHHHHC
Confidence 4 44444444444444444
No 201
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.79 E-value=9.7e-05 Score=56.48 Aligned_cols=93 Identities=8% Similarity=-0.018 Sum_probs=74.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccccchhHHHHHHHhcccCCCCCCh---
Q 047932 460 NVVTYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFIRNNETSKSSRGKLMSQMSSCWSMCFQPKT--- 536 (598)
Q Consensus 460 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~--- 536 (598)
+...+..+...+...|++++|++.|++.++.. +.+...+..+..+|...|++++|.+ .++++++. .|+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~--~~~~al~~-----~p~~~~~ 74 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQ--MCQQGLRY-----TSTAEHV 74 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH--HHHHHHTS-----CSSTTSH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHH--HHHHHHHh-----CCCccHH
Confidence 45678888999999999999999999999875 5678899999999999999999999 99999955 5664
Q ss_pred ---H-HHHH---HHHHhCCCCCChhhHHHhh
Q 047932 537 ---L-ICSI---SIMLQKDMSPGDTMFSTAL 560 (598)
Q Consensus 537 ---~-~~~~---~~~~~~~~~~a~~~~~~~l 560 (598)
. .+.. .....|+.+.|...++++.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 105 (111)
T 2l6j_A 75 AIRSKLQYRLELAQGAVGSVQIPVVEVDELP 105 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCCCSSSSSSCS
T ss_pred HHHHHHHHHHHHHHHHHHhHhhhHhHHHHhH
Confidence 1 1111 4455678888888777643
No 202
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.76 E-value=0.00011 Score=72.57 Aligned_cols=124 Identities=14% Similarity=0.091 Sum_probs=69.7
Q ss_pred HHhcCCHHHHHHHHHHHhhC-----CC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC-CCC-HhhHHH
Q 047932 191 VCKEGFVDKAMELFLQMKDE-----NI-NP-NVVTYNSLIHCFSHADDWNEAKRLFIKMMDQ-----GV-HPN-VVTFSV 256 (598)
Q Consensus 191 ~~~~g~~~~A~~~~~~~~~~-----~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~-~~~~~~ 256 (598)
+..+|++++|+.++++..+. |. .| ...+++.|..+|...|++++|+.++++.+.. |. .|+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 45677777777777666542 11 11 2346677777777777777777777765532 11 122 235666
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHhc-----CC-CcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047932 257 IVDELCKNGKMEEASRLLDLMIQI-----GV-HPN-TFVYNTLMDGFCLTGRVNHAKELFVSMES 314 (598)
Q Consensus 257 l~~~~~~~g~~~~a~~~~~~~~~~-----~~-~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 314 (598)
|...|...|++++|+.++++.+.. |. .|+ ..+...+..++...+.+++|+.+|..+.+
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777777777777766666542 21 111 22334444555555566666666655543
No 203
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.68 E-value=0.00036 Score=50.87 Aligned_cols=80 Identities=14% Similarity=0.169 Sum_probs=44.2
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHH
Q 047932 140 VFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTY 219 (598)
Q Consensus 140 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 219 (598)
...+..+...+...|++++|...|++..+.. +.+...+..+...+.+.|++++|...|++...... .+...+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~ 80 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-------PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAK 80 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-------CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCHHHH
Confidence 3445555666666666666666666665543 33455556666666666666666666666555321 234444
Q ss_pred HHHHHHHH
Q 047932 220 NSLIHCFS 227 (598)
Q Consensus 220 ~~l~~~~~ 227 (598)
..+..++.
T Consensus 81 ~~l~~~~~ 88 (91)
T 1na3_A 81 QNLGNAKQ 88 (91)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444443
No 204
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.67 E-value=0.00052 Score=49.96 Aligned_cols=82 Identities=12% Similarity=0.118 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 047932 426 IISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLG 505 (598)
Q Consensus 426 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 505 (598)
...+..+...+...|++++|+..+++..+.. +.+...+..+..++...|++++|+..+++..+.. +.+...+..+..+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~ 86 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 3455556666666666666666666665542 2245556666666666666666666666666543 3345555555555
Q ss_pred HHhc
Q 047932 506 FIRN 509 (598)
Q Consensus 506 ~~~~ 509 (598)
+.+.
T Consensus 87 ~~~~ 90 (91)
T 1na3_A 87 KQKQ 90 (91)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 5443
No 205
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.60 E-value=0.00048 Score=53.02 Aligned_cols=79 Identities=13% Similarity=0.063 Sum_probs=50.2
Q ss_pred HHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 047932 158 VALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTYNSLIHCFSHADDWNEAKR 237 (598)
Q Consensus 158 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 237 (598)
.|+..|+++.+.+ +.+...+..+...|...|++++|+..|++...... .+...|..+..+|...|++++|..
T Consensus 3 ~a~~~~~~al~~~-------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~ 74 (115)
T 2kat_A 3 AITERLEAMLAQG-------TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDP-TYSVAWKWLGKTLQGQGDRAGARQ 74 (115)
T ss_dssp CHHHHHHHHHTTT-------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHhC-------CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHcCCHHHHHH
Confidence 4556666666654 44566666677777777777777777776665432 245566666666666677777766
Q ss_pred HHHHHHH
Q 047932 238 LFIKMMD 244 (598)
Q Consensus 238 ~~~~~~~ 244 (598)
.|++..+
T Consensus 75 ~~~~al~ 81 (115)
T 2kat_A 75 AWESGLA 81 (115)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666654
No 206
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.60 E-value=0.00018 Score=57.91 Aligned_cols=99 Identities=10% Similarity=0.029 Sum_probs=75.2
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCH----------HHHHHHHHHHhhCCCCCCHHHH
Q 047932 150 LCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFV----------DKAMELFLQMKDENINPNVVTY 219 (598)
Q Consensus 150 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~----------~~A~~~~~~~~~~~~~~~~~~~ 219 (598)
..+.+++++|++.++...+.+ |.+...|..+..++...+++ ++|+..|++..+.+.. +..+|
T Consensus 12 ~~r~~~feeA~~~~~~Ai~l~-------P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~ 83 (158)
T 1zu2_A 12 FDRILLFEQIRQDAENTYKSN-------PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAV 83 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHH
Confidence 346678899999999999986 67899999999999988775 4888888888876433 66788
Q ss_pred HHHHHHHHhcC-----------CHHHHHHHHHHHHHCCCCCCHhhHHHHH
Q 047932 220 NSLIHCFSHAD-----------DWNEAKRLFIKMMDQGVHPNVVTFSVIV 258 (598)
Q Consensus 220 ~~l~~~~~~~~-----------~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 258 (598)
..+..+|...| ++++|++.|++.++. .|+...|...+
T Consensus 84 ~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al 131 (158)
T 1zu2_A 84 WCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSL 131 (158)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred HHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 88888887764 777888888777774 45554444333
No 207
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.46 E-value=5.6e-05 Score=56.53 Aligned_cols=89 Identities=9% Similarity=0.070 Sum_probs=47.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCccccchhHHHHHHHhcccCCCCCChHHHHHHHHHh
Q 047932 468 IHGLCNDGQMDKAHDLFLDMEAKGVEPDCV-IFNTIMLGFIRNNETSKSSRGKLMSQMSSCWSMCFQPKTLICSISIMLQ 546 (598)
Q Consensus 468 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 546 (598)
+..+...|++++|++.|+++++.. +.+.. .+..+..+|...|++++|.+ .++++++. .|+...... .
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~--~~~~al~~-----~p~~~~~~~----~ 74 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALN--NYQSAIEL-----NPDSPALQA----R 74 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHH--HHHHHHHH-----CTTSTHHHH----H
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHH--HHHHHHhc-----CCCcHHHHH----H
Confidence 344555566666666666665543 33445 55566666666666666666 66666543 344332211 1
Q ss_pred CCCCCChhhHHHhhhcCccccc
Q 047932 547 KDMSPGDTMFSTALLMDPDCSC 568 (598)
Q Consensus 547 ~~~~~a~~~~~~~l~~~P~~~~ 568 (598)
+.+.++...+++++..+|+++.
T Consensus 75 ~~~~~a~~~~~~~~~~~p~~~~ 96 (99)
T 2kc7_A 75 KMVMDILNFYNKDMYNQLEHHH 96 (99)
T ss_dssp HHHHHHHHHHCCTTHHHHCCSS
T ss_pred HHHHHHHHHHHHHhccCccccc
Confidence 3334445556666666665543
No 208
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.36 E-value=0.0009 Score=49.91 Aligned_cols=64 Identities=20% Similarity=0.100 Sum_probs=38.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047932 425 DIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEA 489 (598)
Q Consensus 425 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 489 (598)
+...+..+..+|...|++++|+..|+++.+... .+...|..+..+|...|++++|++.|++.++
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDP-DYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455566666666666666666666666655421 1344556666666666666666666666554
No 209
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.31 E-value=0.0012 Score=49.27 Aligned_cols=65 Identities=23% Similarity=0.218 Sum_probs=54.4
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 047932 138 PDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKD 209 (598)
Q Consensus 138 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 209 (598)
.+...+..+...|.+.|++++|+..|+++.+.+ +.+...|..+..+|...|++++|.+.|++..+
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETD-------PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-------TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 356778888889999999999999999988875 45677888888899999999999988888765
No 210
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.19 E-value=0.00096 Score=64.71 Aligned_cols=94 Identities=10% Similarity=0.033 Sum_probs=72.8
Q ss_pred cCCChHHHHHHHHHHHHc-----CCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhccHHHH
Q 047932 51 NLITPNEALCIFDYMLRM-----HPSPP-PVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINCRIMEA 124 (598)
Q Consensus 51 ~~g~~~~A~~~~~~~~~~-----~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~a 124 (598)
+.|++++|..++++++.. ++.+| -..+++.++..|..+|++++|..++++++.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~--------------------- 368 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIK--------------------- 368 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---------------------
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH---------------------
Confidence 468999999999998863 33322 235688999999999999999999998764
Q ss_pred HHHHHHHHHcCCCCC-HhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047932 125 AALFTKLRVFGCEPD-VFTYNTLINGLCRTGHTIVALNLFEEMAN 168 (598)
Q Consensus 125 ~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 168 (598)
++++....+ .|+ ..+++.|...|...|++++|+.++++..+
T Consensus 369 --i~~~~lG~~-Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 369 --PYSKHYPVY-SLNVASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp --HHHHHSCSS-CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --HHHHHcCCC-ChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 333333222 333 45699999999999999999999998875
No 211
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.92 E-value=0.018 Score=53.58 Aligned_cols=74 Identities=14% Similarity=0.089 Sum_probs=46.2
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 047932 423 ELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPDCVIFN 500 (598)
Q Consensus 423 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 500 (598)
+.+..+|..+...+...|++++|...++++...+ |+...|..+...+.-.|++++|.+.|+++... .|...+|.
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~~ 347 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTLY 347 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChHH
Confidence 3456666666666666677777777777766643 56555656666666677777777777666654 35555543
No 212
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.91 E-value=0.0018 Score=47.24 Aligned_cols=49 Identities=8% Similarity=0.190 Sum_probs=46.2
Q ss_pred hHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 047932 55 PNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTG 105 (598)
Q Consensus 55 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 105 (598)
.++|..+|++++..+|. ++.+...+...+.+.|++++|+..|++++...
T Consensus 25 ~~~A~~~l~~AL~~dp~--~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 25 TDEVSLLLEQALQLEPY--NEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHHCcC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 69999999999999997 99999999999999999999999999999874
No 213
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.90 E-value=0.025 Score=52.53 Aligned_cols=135 Identities=9% Similarity=-0.038 Sum_probs=73.9
Q ss_pred CCCHhhHHHHHHHHH--hcC---ChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHh---cC-C----HHHHHHH
Q 047932 137 EPDVFTYNTLINGLC--RTG---HTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCK---EG-F----VDKAMEL 203 (598)
Q Consensus 137 ~~~~~~~~~l~~~~~--~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g-~----~~~A~~~ 203 (598)
+.+..+|...+.+.. ..+ +..+|+.+|+++.+.+ |.....|..+..+|.- .+ . .......
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lD-------P~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a 263 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSS-------PEFTYARAEKALVDIVRHSQHPLDEKQLAALNTE 263 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHH
Confidence 456677777765543 333 3478999999999876 3335555554444431 00 0 0011111
Q ss_pred HHHHhh-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhc
Q 047932 204 FLQMKD-ENINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQI 280 (598)
Q Consensus 204 ~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 280 (598)
++.... ...+.+..+|..+...+...|++++|...+++++..+ |+...|..+...+.-.|++++|...+++....
T Consensus 264 ~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 264 IDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp HHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 111111 0123355556555555555666666666666666653 45555555566666666666666666666654
No 214
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.89 E-value=0.023 Score=50.57 Aligned_cols=85 Identities=15% Similarity=0.082 Sum_probs=47.6
Q ss_pred cHHHHHHHHHHHHHcCCCCC---HhhHHHHHHHHHhc-----CChhHHHHHHHHHHhcCCCCccccCC-CHhHHHHHHHH
Q 047932 120 RIMEAAALFTKLRVFGCEPD---VFTYNTLINGLCRT-----GHTIVALNLFEEMANGNGEFGVVCKP-DTVTYNTIIDG 190 (598)
Q Consensus 120 ~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~-~~~~~~~li~~ 190 (598)
....|...+++..+.+ |+ ...|..++..|.+. |+.++|.+.|++.++.+ +. +..++......
T Consensus 178 ~l~~A~a~lerAleLD--P~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~Ln-------P~~~id~~v~YA~~ 248 (301)
T 3u64_A 178 TVHAAVMMLERACDLW--PSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYC-------SAHDPDHHITYADA 248 (301)
T ss_dssp HHHHHHHHHHHHHHHC--TTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHC-------CTTCSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhC--CCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhC-------CCCCchHHHHHHHH
Confidence 4455556666665552 33 34566666666663 66666666666666643 11 25555555666
Q ss_pred HHhc-CCHHHHHHHHHHHhhCCCC
Q 047932 191 VCKE-GFVDKAMELFLQMKDENIN 213 (598)
Q Consensus 191 ~~~~-g~~~~A~~~~~~~~~~~~~ 213 (598)
+++. |+.+++.+.+++.......
T Consensus 249 l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 249 LCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp TTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred HHHhcCCHHHHHHHHHHHHcCCCC
Confidence 6553 6666666666666655433
No 215
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.78 E-value=0.0033 Score=46.55 Aligned_cols=58 Identities=21% Similarity=0.170 Sum_probs=40.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHh-HHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 047932 146 LINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTV-TYNTIIDGVCKEGFVDKAMELFLQMKDE 210 (598)
Q Consensus 146 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~ 210 (598)
.+..+.+.|++++|+..|+++.+.. +.+.. .+..+..+|...|++++|.+.|++..+.
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE-------PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-------SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-------CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 4555667777777777777777654 44556 6777777777777777777777777665
No 216
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.69 E-value=0.0086 Score=58.15 Aligned_cols=99 Identities=13% Similarity=0.072 Sum_probs=68.8
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCC-CccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhC-----CC-CC-CHH
Q 047932 146 LINGLCRTGHTIVALNLFEEMANGNGE-FGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDE-----NI-NP-NVV 217 (598)
Q Consensus 146 l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~-~~-~~~ 217 (598)
.+..+.+.|++++|+.++++.+..... +|...+.-..+++.+...|...|++++|+.+++++... |. .| ...
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~ 372 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV 372 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence 355567889999999999998875422 22222223467888888999999999999888877642 21 12 234
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047932 218 TYNSLIHCFSHADDWNEAKRLFIKMMD 244 (598)
Q Consensus 218 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 244 (598)
+++.|...|...|++++|+.++++.++
T Consensus 373 ~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 373 QVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 677777778888888888777776653
No 217
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.68 E-value=0.17 Score=54.09 Aligned_cols=125 Identities=14% Similarity=0.127 Sum_probs=67.8
Q ss_pred HHhcCCHHHHHH-HHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHH
Q 047932 226 FSHADDWNEAKR-LFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTLMDGFCLTGRVNH 304 (598)
Q Consensus 226 ~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 304 (598)
....+++++|.+ ++..+ + +......++..+.+.|..+.|+++.+. .. .-.......|+++.
T Consensus 609 ~~~~~~~~~a~~~~l~~i-----~-~~~~~~~~~~~l~~~~~~~~a~~~~~~---------~~---~~f~~~l~~~~~~~ 670 (814)
T 3mkq_A 609 LTLRGEIEEAIENVLPNV-----E-GKDSLTKIARFLEGQEYYEEALNISPD---------QD---QKFELALKVGQLTL 670 (814)
T ss_dssp HHHTTCHHHHHHHTGGGC-----C-CHHHHHHHHHHHHHTTCHHHHHHHCCC---------HH---HHHHHHHHHTCHHH
T ss_pred HHHhCCHHHHHHHHHhcC-----C-chHHHHHHHHHHHhCCChHHheecCCC---------cc---hheehhhhcCCHHH
Confidence 345667777665 43111 1 012225566666777777776655421 11 11233455677777
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 047932 305 AKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFEVHQVEHALKLFDEMQ 383 (598)
Q Consensus 305 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 383 (598)
|.++.+.+ .+...|..+...+.+.++++.|.+.|.++.. |..+...+...++.+...++-+...
T Consensus 671 A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~ 734 (814)
T 3mkq_A 671 ARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAE 734 (814)
T ss_dssp HHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHH
Confidence 77765433 2556777777777777777777777776643 2233333444555555444433333
No 218
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.66 E-value=0.0035 Score=60.77 Aligned_cols=91 Identities=8% Similarity=-0.061 Sum_probs=53.5
Q ss_pred cCChhHHHHHHHHHHhcCC-CCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhC-----CC-CCC-HHHHHHHHH
Q 047932 153 TGHTIVALNLFEEMANGNG-EFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDE-----NI-NPN-VVTYNSLIH 224 (598)
Q Consensus 153 ~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~-~~~-~~~~~~l~~ 224 (598)
.|++++|+.++++.+.... .+|...+.-..+++.|...|...|++++|+.++++.... |. .|+ ..+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 4677888888877665321 122111222456777777777777777777777766532 21 111 235666666
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 047932 225 CFSHADDWNEAKRLFIKMM 243 (598)
Q Consensus 225 ~~~~~~~~~~a~~~~~~~~ 243 (598)
.|...|++++|+.++++.+
T Consensus 391 ~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHH
Confidence 6666666666666666554
No 219
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.59 E-value=0.014 Score=56.65 Aligned_cols=92 Identities=17% Similarity=0.008 Sum_probs=64.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhCC---CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----CCC-CCC-HHH
Q 047932 398 IDGLCKNGFVLEALELFCAIGNSK---YELD----IISYSCLIDGLCKIGKLETAWELFQSLSR-----VGL-LPN-VVT 463 (598)
Q Consensus 398 ~~~~~~~g~~~~A~~~~~~~~~~~---~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~-~p~-~~~ 463 (598)
+..+.+.|++++|+.++++.+... +.++ ..+++.++.+|...|++++|+.++++++. .|. .|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 344556788888888888776421 1122 34678888888888888888888887764 221 122 456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047932 464 YNIMIHGLCNDGQMDKAHDLFLDMEA 489 (598)
Q Consensus 464 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 489 (598)
++.|...|...|++++|+.+++++++
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 78888888889999998888888764
No 220
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.41 E-value=0.48 Score=42.20 Aligned_cols=92 Identities=10% Similarity=0.073 Sum_probs=72.5
Q ss_pred hhHHHHHHHHHHhcCCCCccccCCC---HhHHHHHHHHHHh-----cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 047932 156 TIVALNLFEEMANGNGEFGVVCKPD---TVTYNTIIDGVCK-----EGFVDKAMELFLQMKDENINPNVVTYNSLIHCFS 227 (598)
Q Consensus 156 ~~~A~~~~~~~~~~~~~~~~~~~~~---~~~~~~li~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 227 (598)
...|...+++..+.+ |+ ...|..+...|.+ -|+.++|.+.|++..+.+..-+..++......++
T Consensus 179 l~~A~a~lerAleLD--------P~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~ 250 (301)
T 3u64_A 179 VHAAVMMLERACDLW--------PSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALC 250 (301)
T ss_dssp HHHHHHHHHHHHHHC--------TTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhC--------CCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHH
Confidence 467888888888865 44 6689999999998 4999999999999998644334788888888888
Q ss_pred hc-CCHHHHHHHHHHHHHCCCC--CCHhhHH
Q 047932 228 HA-DDWNEAKRLFIKMMDQGVH--PNVVTFS 255 (598)
Q Consensus 228 ~~-~~~~~a~~~~~~~~~~~~~--~~~~~~~ 255 (598)
.. |+.+.+.+.+++.+..... |+....+
T Consensus 251 ~~~gd~~~a~~~L~kAL~a~p~~~P~~~lan 281 (301)
T 3u64_A 251 IPLNNRAGFDEALDRALAIDPESVPHNKLLV 281 (301)
T ss_dssp TTTTCHHHHHHHHHHHHHCCGGGCSSCHHHH
T ss_pred HhcCCHHHHHHHHHHHHcCCCCCCCChhHHH
Confidence 84 9999999999999987555 5544443
No 221
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.38 E-value=0.029 Score=40.75 Aligned_cols=65 Identities=11% Similarity=0.011 Sum_probs=35.8
Q ss_pred CHhhHHHHHHHHHhcCC---hhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 047932 139 DVFTYNTLINGLCRTGH---TIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDE 210 (598)
Q Consensus 139 ~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 210 (598)
+...+..+..++...++ .++|..++++.++.+ +.+......+...+.+.|++++|+..|+.+.+.
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-------p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-------PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-------cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 44455555555543333 456666666665554 344555555556666666666666666665554
No 222
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.33 E-value=0.027 Score=44.78 Aligned_cols=81 Identities=11% Similarity=-0.020 Sum_probs=50.7
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHH
Q 047932 408 LEALELFCAIGNSKYELDIISYSCLIDGLCKIG---KLETAWELFQSLSRVGLLP--NVVTYNIMIHGLCNDGQMDKAHD 482 (598)
Q Consensus 408 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~ 482 (598)
..+.+-|.+....+ .++..+...+..++++.+ ++++++.+++...+.+ .| +...+..+.-+|.+.|++++|++
T Consensus 15 ~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 15 LKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHH
Confidence 34455555555444 356667677777777766 4557777777776643 23 23445556666677777777777
Q ss_pred HHHHHHHC
Q 047932 483 LFLDMEAK 490 (598)
Q Consensus 483 ~~~~~~~~ 490 (598)
+++.+++.
T Consensus 93 y~~~lL~i 100 (152)
T 1pc2_A 93 YVRGLLQT 100 (152)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 77777764
No 223
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.13 E-value=0.043 Score=43.64 Aligned_cols=91 Identities=18% Similarity=0.101 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCccccc
Q 047932 442 LETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDG---QMDKAHDLFLDMEAKGVEP--DCVIFNTIMLGFIRNNETSKSS 516 (598)
Q Consensus 442 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~ 516 (598)
...+.+-|.+..+.|. ++..+...+..++++.+ ++++++.++++..+.. .| +...+..+.-+|.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 4455666666655543 57777777888888877 6668888888887754 34 3566667777788888888888
Q ss_pred hhHHHHHHHhcccCCCCCChHHHHH
Q 047932 517 RGKLMSQMSSCWSMCFQPKTLICSI 541 (598)
Q Consensus 517 ~~~~~~~~~~~~~~~~~p~~~~~~~ 541 (598)
+ +++.+++. .|+......
T Consensus 92 ~--y~~~lL~i-----eP~n~QA~~ 109 (152)
T 1pc2_A 92 K--YVRGLLQT-----EPQNNQAKE 109 (152)
T ss_dssp H--HHHHHHHH-----CTTCHHHHH
T ss_pred H--HHHHHHhc-----CCCCHHHHH
Confidence 8 88888854 676544433
No 224
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.02 E-value=0.51 Score=50.30 Aligned_cols=100 Identities=13% Similarity=0.073 Sum_probs=58.9
Q ss_pred HHHhCCCHHHHHH-HHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHH
Q 047932 260 ELCKNGKMEEASR-LLDLMIQIGVHPNTFVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVE 338 (598)
Q Consensus 260 ~~~~~g~~~~a~~-~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 338 (598)
.....+++++|.+ ++..+ ++......++..+.+.|..+.|.++.+... .-.......|+++
T Consensus 608 ~~~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~ 669 (814)
T 3mkq_A 608 TLTLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLT 669 (814)
T ss_dssp HHHHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHH
T ss_pred HHHHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHH
Confidence 3445677777765 44211 112223566666777777777776552111 1123345667777
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 047932 339 EALNLYRKMLPKGIRPTVVTYSTLFLGLFEVHQVEHALKLFDEMQ 383 (598)
Q Consensus 339 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 383 (598)
+|.++.+.+ .+...|..+...+.+.++++.|.+.|.++.
T Consensus 670 ~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 670 LARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp HHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 777775433 256677777777777777777777776654
No 225
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.91 E-value=0.56 Score=38.30 Aligned_cols=100 Identities=15% Similarity=0.164 Sum_probs=50.4
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 047932 296 FCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFEVHQVEHA 375 (598)
Q Consensus 296 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 375 (598)
....|+++.|.++.+.+. +...|..|.......|+++-|.+.|.+... +..+.-.|...|+.+..
T Consensus 15 AL~lg~l~~A~e~a~~l~------~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L 79 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKLN------DSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKL 79 (177)
T ss_dssp HHHTTCHHHHHHHHHHHC------CHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHH
T ss_pred HHhcCCHHHHHHHHHHhC------CHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHH
Confidence 345566666666555441 455566666666666666666666655442 12233334445555555
Q ss_pred HHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 047932 376 LKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCA 416 (598)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 416 (598)
.++-+.....| -++.....+...|+++++.++|.+
T Consensus 80 ~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 80 SKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHH
Confidence 54444444333 122223334445666666655543
No 226
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.76 E-value=0.12 Score=38.47 Aligned_cols=64 Identities=9% Similarity=-0.116 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhCC------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 047932 391 TYIYNTFIDGLCKNGFVLEALELFCAIGNSK------YELDIISYSCLIDGLCKIGKLETAWELFQSLSR 454 (598)
Q Consensus 391 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 454 (598)
...+..+...+...|++..|..+|+.+.+.. ..+...++..+..++.+.|+++.|+..++++.+
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 3344455555556666666666665554310 012334445555555555555555555555544
No 227
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.73 E-value=0.11 Score=40.67 Aligned_cols=96 Identities=15% Similarity=0.128 Sum_probs=73.3
Q ss_pred CCHHHHHHHHHHHHhcCCh------hHHHHHHHHHHhCCCCCCHH-hHHHHHh---------c--cHHHHHHHHHHHHHc
Q 047932 73 PPVSSFNILFGCLAKNKHY------DTVLSLFKRLNSTGLFPDLY-THSILIN---------C--RIMEAAALFTKLRVF 134 (598)
Q Consensus 73 ~~~~~~~~l~~~~~~~g~~------~~A~~~~~~~~~~~~~p~~~-~~~~ll~---------~--~~~~a~~~~~~~~~~ 134 (598)
.|+++|-..+..+-+.|++ ++.+++|+++... +.|+.. .+...+. . +.++|+++|+.+...
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 4889999999999888999 8999999998875 344321 1111111 1 888999999999775
Q ss_pred CCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 047932 135 GCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGN 170 (598)
Q Consensus 135 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 170 (598)
+ +.=...|......-.++|++..|.+++......+
T Consensus 90 h-KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 90 C-KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp C-TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred h-HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 2 3336778888888889999999999999998865
No 228
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.68 E-value=0.065 Score=39.89 Aligned_cols=64 Identities=13% Similarity=-0.028 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCC------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047932 427 ISYSCLIDGLCKIGKLETAWELFQSLSRVG------LLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEAK 490 (598)
Q Consensus 427 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 490 (598)
.-...+...+...|++..|...|+...+.- -.+....+..+..++.+.|+++.|+.+++++.+.
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 334455555666666666666665554420 1123445555666666666666666666666553
No 229
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.53 E-value=0.15 Score=40.01 Aligned_cols=65 Identities=12% Similarity=0.079 Sum_probs=44.4
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 047932 438 KIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIML 504 (598)
Q Consensus 438 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 504 (598)
..+++++|.++|+.+.+.+-.- ...|......-.++|+...|.+++.+.+..+ +.+...+...+.
T Consensus 72 ei~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~-~k~~~~le~a~~ 136 (161)
T 4h7y_A 72 AIQEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERG-AVPLEMLEIALR 136 (161)
T ss_dssp HHHCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CBCHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccC-CCcHHHHHHHHH
Confidence 3478888888888886642222 6677777777778888888888888888766 334444444443
No 230
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.46 E-value=0.84 Score=37.25 Aligned_cols=103 Identities=12% Similarity=0.165 Sum_probs=64.9
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHH
Q 047932 189 DGVCKEGFVDKAMELFLQMKDENINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKME 268 (598)
Q Consensus 189 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 268 (598)
......|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+... +..+.-.|...|+.+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e 77 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVN 77 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHH
T ss_pred HHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHH
Confidence 3445677888887777665 2667788888888888888888877766532 334555566667776
Q ss_pred HHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047932 269 EASRLLDLMIQIGVHPNTFVYNTLMDGFCLTGRVNHAKELFVSM 312 (598)
Q Consensus 269 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 312 (598)
...++-+.....| -++....++.-.|+++++.++|.+.
T Consensus 78 ~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 78 KLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC
Confidence 6665555554443 1233344455667777777776543
No 231
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.01 E-value=0.88 Score=34.87 Aligned_cols=61 Identities=18% Similarity=0.120 Sum_probs=27.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 047932 396 TFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGL 457 (598)
Q Consensus 396 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 457 (598)
..++.+...|.-++-.+++..+... .+|++.....+..+|.+.|+..+|.+++.++-+.|+
T Consensus 96 ~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 96 KALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 3334444444444444444443321 134444444455555555555555555555444443
No 232
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=94.87 E-value=0.96 Score=34.65 Aligned_cols=140 Identities=11% Similarity=0.035 Sum_probs=75.2
Q ss_pred HhCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 047932 262 CKNGKMEEASRLLDLMIQIGVHPNTFVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEAL 341 (598)
Q Consensus 262 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 341 (598)
.-.|.+++..++..+..... +..-+|=++--....-+-+-..++++.+-+. .|. ...|+.....
T Consensus 18 ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDi----------s~C~NlKrVi 81 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKSVV 81 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHHHH
T ss_pred HHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------HhhhcHHHHH
Confidence 34566666666666655532 3333333333333344444444444444322 121 1233333333
Q ss_pred HHHHHHccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCC
Q 047932 342 NLYRKMLPKGIRPTVVTYSTLFLGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSK 421 (598)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 421 (598)
..+-.+-. +...+...+..+...|..++..+++..+... .+|++.....+..+|.+.|+..+|.+++.++.+.|
T Consensus 82 ~C~~~~n~-----~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 82 ECGVINNT-----LNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHTTC-----CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHhcc-----hHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 33333221 3333455566666777777777777776543 36677777777777888888877777777777766
Q ss_pred CC
Q 047932 422 YE 423 (598)
Q Consensus 422 ~~ 423 (598)
.+
T Consensus 156 ~k 157 (172)
T 1wy6_A 156 EK 157 (172)
T ss_dssp CH
T ss_pred hH
Confidence 43
No 233
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=94.86 E-value=0.25 Score=37.72 Aligned_cols=84 Identities=11% Similarity=-0.052 Sum_probs=53.1
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHH---HHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHH
Q 047932 405 GFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLET---AWELFQSLSRVGLLP--NVVTYNIMIHGLCNDGQMDK 479 (598)
Q Consensus 405 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~ 479 (598)
.....+.+-|......+ .++..+-..+..++++..+... ++.+++.+...+ .| .....-.|.-++.+.|++++
T Consensus 15 ~~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHH
Confidence 33445555555554444 3566777777777777776555 777777776643 12 23334455667778888888
Q ss_pred HHHHHHHHHHC
Q 047932 480 AHDLFLDMEAK 490 (598)
Q Consensus 480 A~~~~~~~~~~ 490 (598)
|.++++.+++.
T Consensus 93 A~~~~~~lL~~ 103 (126)
T 1nzn_A 93 ALKYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 88888888774
No 234
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=94.33 E-value=0.39 Score=36.61 Aligned_cols=89 Identities=18% Similarity=0.093 Sum_probs=53.8
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCcccc
Q 047932 441 KLETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDK---AHDLFLDMEAKGVEP--DCVIFNTIMLGFIRNNETSKS 515 (598)
Q Consensus 441 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A 515 (598)
....+.+-|.+....|. ++..+-..+..++++..+... ++.+++.....+ .| .......+.-++.+.|++++|
T Consensus 16 ~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHH
Confidence 34445555555544433 566666667777777665554 777777766643 23 334455566677777777777
Q ss_pred chhHHHHHHHhcccCCCCCChHH
Q 047932 516 SRGKLMSQMSSCWSMCFQPKTLI 538 (598)
Q Consensus 516 ~~~~~~~~~~~~~~~~~~p~~~~ 538 (598)
.+ .++.+++. .|+...
T Consensus 94 ~~--~~~~lL~~-----eP~n~Q 109 (126)
T 1nzn_A 94 LK--YVRGLLQT-----EPQNNQ 109 (126)
T ss_dssp HH--HHHHHHHH-----CTTCHH
T ss_pred HH--HHHHHHHh-----CCCCHH
Confidence 77 77777744 565543
No 235
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=93.86 E-value=0.002 Score=61.21 Aligned_cols=257 Identities=11% Similarity=0.126 Sum_probs=142.9
Q ss_pred cCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhc-----cHHHHH
Q 047932 51 NLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINC-----RIMEAA 125 (598)
Q Consensus 51 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~-----~~~~a~ 125 (598)
..+++++|.++-++. ..+..|..++.+..+.+...+|++.|-+.. |+..|..++.. .+++-+
T Consensus 37 ~i~~ldRa~eyA~~~-------n~p~VWs~LgkAqL~~~~v~eAIdsyIkA~------Dps~y~eVi~~A~~~~~~edLv 103 (624)
T 3lvg_A 37 HIGNLDRAYEFAERC-------NEPAVWSQLAKAQLQKGMVKEAIDSYIKAD------DPSSYMEVVQAANTSGNWEELV 103 (624)
T ss_dssp GGCCSTTTTTSSSSC-------CCCCCSSSHHHHTTTSSSCTTTTTSSCCCS------CCCSSSHHHHHTTTSSCCTTHH
T ss_pred hccccHHHHHHHHHh-------CCccHHHHHHHHHHccCchHHHHHHHHhCC------ChHHHHHHHHHHHhCCCHHHHH
Confidence 345566666554433 244566667766666666666665553322 12222222222 344444
Q ss_pred HHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHH
Q 047932 126 ALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFL 205 (598)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 205 (598)
+.+.-..+. ..+..+=+.|+-+|.+.|+..+-.++ +. .||..-...+.+-|...|.++.|.-+|.
T Consensus 104 ~yL~MaRk~--~ke~~IDteLi~ayAk~~rL~elEef----l~---------~~N~A~iq~VGDrcf~e~lYeAAKilys 168 (624)
T 3lvg_A 104 KYLQMARKK--ARESYVETELIFALAKTNRLAELEEF----IN---------GPNNAHIQQVGDRCYDEKMYDAAKLLYN 168 (624)
T ss_dssp HHHHTTSTT--CCSTTTTHHHHHHHHTSCSSSTTTST----TS---------CCSSSCTHHHHHHHHHSCCSTTSSTTGG
T ss_pred HHHHHHHHH--hcccccHHHHHHHHHhhCcHHHHHHH----Hc---------CCCcccHHHHHHHHHHccCHHHHHHHHH
Confidence 444433332 22444446777778887776543322 11 3555555667777777777777766665
Q ss_pred HHhhCC--------------------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCC
Q 047932 206 QMKDEN--------------------INPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNG 265 (598)
Q Consensus 206 ~~~~~~--------------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 265 (598)
.+.... -..++.||-.+-.+|...+++.-|.-.--.++-. ++ -...++..|-..|
T Consensus 169 ~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G 243 (624)
T 3lvg_A 169 NVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRG 243 (624)
T ss_dssp GSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTC
T ss_pred hCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCC
Confidence 442110 0125667777777777777776665544444321 12 2234566677788
Q ss_pred CHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCC------CChhhHHHHHHHHHhcCCHH
Q 047932 266 KMEEASRLLDLMIQIGVHPNTFVYNTLMDGFCLTGRVNHAKELFVSMESN-GCM------HDVVSYTTLINGYCKTKNVE 338 (598)
Q Consensus 266 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~------~~~~~~~~l~~~~~~~~~~~ 338 (598)
.+++.+.+++..+... ......|+-|.-.|++- ++++..+.++..-.. +++ .....|.-++-.|.+-.+++
T Consensus 244 ~f~ELIsLlEaglglE-rAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~D 321 (624)
T 3lvg_A 244 YFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYD 321 (624)
T ss_dssp CCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHH
T ss_pred CHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHH
Confidence 8888888887776432 34566777777766654 555555555443221 111 13455777888888878877
Q ss_pred HHHH
Q 047932 339 EALN 342 (598)
Q Consensus 339 ~A~~ 342 (598)
.|..
T Consensus 322 nA~l 325 (624)
T 3lvg_A 322 NAII 325 (624)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6653
No 236
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=93.70 E-value=8.4 Score=40.84 Aligned_cols=267 Identities=10% Similarity=0.031 Sum_probs=138.5
Q ss_pred HHhCCCHHHHHHHHHHHHhcCCCcC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-------CCChhhHHHHHHHH
Q 047932 261 LCKNGKMEEASRLLDLMIQIGVHPN--TFVYNTLMDGFCLTGRVNHAKELFVSMESNGC-------MHDVVSYTTLINGY 331 (598)
Q Consensus 261 ~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-------~~~~~~~~~l~~~~ 331 (598)
....|+.++++.++...+..+...+ ...-..+.-+....|..+++..++.......- .+....-..+.-+.
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 4456677777666665543210112 22223333445556665667777776654321 01111122233333
Q ss_pred --HhcCCHHHHHHHHHHHccCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCH
Q 047932 332 --CKTKNVEEALNLYRKMLPKGIRPTVV--TYSTLFLGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFV 407 (598)
Q Consensus 332 --~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 407 (598)
.-.++ +++.+.+..+....- +... .-.++...+.-.|+.+....++..+.+.. ..+..-...+.-++...|+.
T Consensus 464 a~~GS~~-eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~~ 540 (963)
T 4ady_A 464 AAMGSAN-IEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGRQ 540 (963)
T ss_dssp HSTTCCC-HHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCG
T ss_pred HhcCCCC-HHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCCh
Confidence 33343 455666665554311 1111 11223333446678787788887776642 21222233333444567888
Q ss_pred HHHHHHHHHHhhCCCCCCHHHH--HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 047932 408 LEALELFCAIGNSKYELDIISY--SCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFL 485 (598)
Q Consensus 408 ~~A~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 485 (598)
+.+..+.+.+.... .|....- ..+.-+|+..|+.....+++..+.+. ...+......+.-++...|+.+.+.++++
T Consensus 541 e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d-~~d~VRraAViaLGlI~~g~~e~v~rlv~ 618 (963)
T 4ady_A 541 ELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD-SNDDVRRAAVIALGFVLLRDYTTVPRIVQ 618 (963)
T ss_dssp GGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTSSSCSSHHHHTT
T ss_pred HHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC-CcHHHHHHHHHHHHhhccCCHHHHHHHHH
Confidence 88888888877532 2222222 23445567788887777788888764 12223333333334555677777777776
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCc-cccchhHHHHHHHhcccCCCCCChHHHHH
Q 047932 486 DMEAKGVEPDCVIFNTIMLGFIRNNET-SKSSRGKLMSQMSSCWSMCFQPKTLICSI 541 (598)
Q Consensus 486 ~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~p~~~~~~~ 541 (598)
.+.+.+ .|....-..+.-+....|+. .+++. .+..+.. .+|..+-..
T Consensus 619 ~L~~~~-d~~VR~gAalALGli~aGn~~~~aid--~L~~L~~------D~d~~Vrq~ 666 (963)
T 4ady_A 619 LLSKSH-NAHVRCGTAFALGIACAGKGLQSAID--VLDPLTK------DPVDFVRQA 666 (963)
T ss_dssp TGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHH--HHHHHHT------CSSHHHHHH
T ss_pred HHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHH--HHHHHcc------CCCHHHHHH
Confidence 666544 34433333444444555555 46777 8888763 356554443
No 237
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=91.64 E-value=7.9 Score=35.39 Aligned_cols=172 Identities=12% Similarity=0.075 Sum_probs=90.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHhc-----cHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHH
Q 047932 77 SFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDLYTHSILINC-----RIMEAAALFTKLRVFGCEPDVFTYNTLINGLC 151 (598)
Q Consensus 77 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 151 (598)
.|.++..-|.+++++++|++++..-.. .++.. -.|-+.-+.+-..+.+.++|......|+..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~GA~-----------~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASVSQ-----------TLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH-----------HHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHH-----------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 345566667888999999887754321 11111 22344444555566677778777777777776
Q ss_pred hcCChh-HHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC
Q 047932 152 RTGHTI-VALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTYNSLIHCFSHAD 230 (598)
Q Consensus 152 ~~g~~~-~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 230 (598)
.....+ .=..+.+++.+....+|....-|+.....+...|.+.+++.+|...|- . |-.++...+..++.-+...+
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--l--g~~~s~~~~a~mL~ew~~~~ 181 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV--L--GTKESPEVLARMEYEWYKQD 181 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT--T--SCTTHHHHHHHHHHHHHHTS
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH--h--cCCchHHHHHHHHHHHHHhc
Confidence 655322 122333444332211111123466777778888888888888877762 2 22333355544444333333
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHH
Q 047932 231 DWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMI 278 (598)
Q Consensus 231 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 278 (598)
... ..+..... .+-.|.-.+++..|...++...
T Consensus 182 ~~~--------------e~dlfiaR-aVL~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 182 ESH--------------TAPLYCAR-AVLPYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp CGG--------------GHHHHHHH-HHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCc--------------cHHHHHHH-HHHHHHHhCCHHHHHHHHHHHH
Confidence 211 11111122 2233555667777766655544
No 238
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=91.57 E-value=7.7 Score=35.16 Aligned_cols=173 Identities=13% Similarity=0.082 Sum_probs=92.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHH----hCCCCCCHHhHHHHHhccHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh
Q 047932 77 SFNILFGCLAKNKHYDTVLSLFKRLN----STGLFPDLYTHSILINCRIMEAAALFTKLRVFGCEPDVFTYNTLINGLCR 152 (598)
Q Consensus 77 ~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~p~~~~~~~ll~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 152 (598)
.|.++..-|.+++++++|++++..-. +.| +.+. -.|-|.-+.+-..+.+.+++......++..+..
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~ga~~ll~~~-Q~~s---------a~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~ 104 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQGALSFLKAK-QGGS---------GTDLIFYLLEVYDLAEVKVDDISVARLVRLIAE 104 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-CHHH---------HHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHCC-Ccch---------HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 45566666778888888888875432 221 0000 123344455555666777787777777777665
Q ss_pred cCChh-HHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc--
Q 047932 153 TGHTI-VALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTYNSLIHCFSHA-- 229 (598)
Q Consensus 153 ~g~~~-~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-- 229 (598)
....+ .-.++.+.+.+....+|....-|+..+..+...|.+.|++.+|...|-.-. .-+...+..++.-+...
T Consensus 105 ~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~----~~s~~~~a~~l~~w~~~~~ 180 (312)
T 2wpv_A 105 LDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGT----HDSMIKYVDLLWDWLCQVD 180 (312)
T ss_dssp CCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSC----HHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC----CccHHHHHHHHHHHHHhcC
Confidence 43222 223444444433211111123467788888888888888888887764211 11344555444443333
Q ss_pred -CCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHH
Q 047932 230 -DDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMI 278 (598)
Q Consensus 230 -~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 278 (598)
|...++--. ... .+-.|.-.|+...|..+++...
T Consensus 181 ~~~~~e~dlf--------------~~R-aVL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 181 DIEDSTVAEF--------------FSR-LVFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp CCCHHHHHHH--------------HHH-HHHHHHHTTBHHHHHHHHHHHH
T ss_pred CCCcchHHHH--------------HHH-HHHHHHHhcCHHHHHHHHHHHH
Confidence 333222111 111 2223456677777777776554
No 239
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=91.09 E-value=0.84 Score=43.50 Aligned_cols=68 Identities=10% Similarity=0.127 Sum_probs=44.2
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhh-----CCCCCCHHH
Q 047932 144 NTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKD-----ENINPNVVT 218 (598)
Q Consensus 144 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~ 218 (598)
..++..+...|++.+++..++.+...+ |-+...|..++.++.+.|+..+|++.|+.+.. .|+.|+..+
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~-------P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEH-------PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 445566667777777777777766654 45666777777777777777777777766543 266665543
No 240
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=91.08 E-value=7.2 Score=43.25 Aligned_cols=130 Identities=11% Similarity=0.161 Sum_probs=72.7
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHH
Q 047932 253 TFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNT----FVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLI 328 (598)
Q Consensus 253 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 328 (598)
-|..++..+.+.+.++.+.+.-...++.....+. ..|..+.+.+...|++++|...+-.+.... .-......|+
T Consensus 901 YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~--~r~~cLr~LV 978 (1139)
T 4fhn_B 901 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTP--LKKSCLLDFV 978 (1139)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSS--SCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHH--HHHHHHHHHH
Confidence 4666777788888888888777776654322222 246677788888888888888877776553 2344555555
Q ss_pred HHHHhcC------------CHHHHHHHHHHHccC--CCCCCHHHHHHHHHHHHhcCCHHHH-HHHHHHHhh
Q 047932 329 NGYCKTK------------NVEEALNLYRKMLPK--GIRPTVVTYSTLFLGLFEVHQVEHA-LKLFDEMQH 384 (598)
Q Consensus 329 ~~~~~~~------------~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a-~~~~~~~~~ 384 (598)
...|..| ..++..+++..-.+. .+...+.-|..|-.-+...|++.+| .-+|+.+.+
T Consensus 979 ~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~R 1049 (1139)
T 4fhn_B 979 NQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLSR 1049 (1139)
T ss_dssp HHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHHH
Confidence 5555443 345555655432211 0111112233333344455665544 445555543
No 241
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=90.96 E-value=3.2e-05 Score=73.05 Aligned_cols=265 Identities=12% Similarity=0.167 Sum_probs=161.9
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 047932 180 DTVTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVD 259 (598)
Q Consensus 180 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 259 (598)
.+..|..|..+..+.++..+|++-|-+. -|+..|..++....+.|.+++-...+....+..- ++..=+.|+-
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ 124 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIF 124 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHH
Confidence 3567888889988888888877655222 2667788888888899999988888877766533 4444457888
Q ss_pred HHHhCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHH
Q 047932 260 ELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEE 339 (598)
Q Consensus 260 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 339 (598)
+|++.++..+..+.+ ..|+..-...+..-|...|.++.|.-+|..+.. |..|..++.+.|++..
T Consensus 125 ayAk~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN---------~akLAstLV~L~~yq~ 188 (624)
T 3lvg_A 125 ALAKTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQA 188 (624)
T ss_dssp HHHTSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC---------CTTTSSSSSSCSGGGS
T ss_pred HHHhhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCcc---------HHHHHHHHHHHHHHHH
Confidence 899988876543332 135666666777778888888888776654432 3344455566666666
Q ss_pred HHHHHHHHccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 047932 340 ALNLYRKMLPKGIRPTVVTYSTLFLGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGN 419 (598)
Q Consensus 340 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 419 (598)
|.+.-++. .+..||..+-.+|...+.+.-|...--.++-.. + ....++..|...|.+++-+.+++....
T Consensus 189 AVdaArKA------ns~ktWKeV~~ACvd~~EfrLAqicGLniIvha---d--eL~elv~~YE~~G~f~ELIsLlEaglg 257 (624)
T 3lvg_A 189 AVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHA---D--ELEELINYYQDRGYFEELITMLEAALG 257 (624)
T ss_dssp STTTTTTC------CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCS---S--CCSGGGSSSSTTCCCTTSTTTHHHHTT
T ss_pred HHHHHHhc------CChhHHHHHHHHHhCchHHHHHHHhcchhcccH---H--HHHHHHHHHHhCCCHHHHHHHHHHHhC
Confidence 65433322 255667777777777777666555443333211 1 112345556677777777777777664
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-CCCCC------CHHHHHHHHHHHHhcCCHHHHH
Q 047932 420 SKYELDIISYSCLIDGLCKIGKLETAWELFQSLSR-VGLLP------NVVTYNIMIHGLCNDGQMDKAH 481 (598)
Q Consensus 420 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p------~~~~~~~l~~~~~~~g~~~~A~ 481 (598)
.. +....+|+.|.-.|++- ++++..+.++.... .+++- ....|.-++-.|.+-.+++.|.
T Consensus 258 lE-rAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 258 LE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp ST-TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred CC-chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 33 45667777777777664 34444444333221 11111 1234555666666666666553
No 242
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.74 E-value=13 Score=36.08 Aligned_cols=49 Identities=20% Similarity=0.302 Sum_probs=28.2
Q ss_pred CCHHHHHHHHHHHHHC-----CCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHH
Q 047932 230 DDWNEAKRLFIKMMDQ-----GVHPNVVTFSVIVDELCKNGKMEEASRLLDLMI 278 (598)
Q Consensus 230 ~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 278 (598)
++++.|++.+..+.+. +..........++..|...|+++...+.+..+.
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Ls 83 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLS 83 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 5667777666555432 122234455566667777777776666555443
No 243
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=90.61 E-value=2.1 Score=40.73 Aligned_cols=74 Identities=8% Similarity=0.068 Sum_probs=53.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHHHHHH
Q 047932 429 YSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEA-----KGVEPDCVIFNTIM 503 (598)
Q Consensus 429 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~~~~l~ 503 (598)
...++..+...|+++++...++.+.... +-+...|..++.++.+.|+..+|++.|+++.+ .|+.|...+-...-
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~~ 252 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNE 252 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 3456677777888888888888777642 33667788888888888888888888887653 38888876654443
No 244
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=90.23 E-value=1.8 Score=34.67 Aligned_cols=23 Identities=13% Similarity=0.134 Sum_probs=11.5
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHH
Q 047932 255 SVIVDELCKNGKMEEASRLLDLM 277 (598)
Q Consensus 255 ~~l~~~~~~~g~~~~a~~~~~~~ 277 (598)
..+..++...|++..|...|++.
T Consensus 67 ~~ladalf~~~eyrrA~~~y~qA 89 (167)
T 3ffl_A 67 VYHADSLFHDKEYRNAVSKYTMA 89 (167)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHH
Confidence 33444555555555555555554
No 245
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=90.22 E-value=1.5 Score=45.31 Aligned_cols=52 Identities=15% Similarity=0.095 Sum_probs=25.7
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047932 435 GLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDM 487 (598)
Q Consensus 435 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 487 (598)
.+...|+++-|+++.++.... .+-+-.+|..|..+|...|+++.|+-.+..+
T Consensus 346 FLl~K~~~elAL~~Ak~AV~~-aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 346 FLLNRGDYELALGVSNTSTEL-ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH-CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHhccCcHHHHHHHHHHHHhc-CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 344455555555555555443 1112445555555555555555555554443
No 246
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=90.08 E-value=2.4 Score=32.52 Aligned_cols=67 Identities=12% Similarity=0.016 Sum_probs=27.5
Q ss_pred CCCHHHHHHHHHHHHHcCCH---HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047932 423 ELDIISYSCLIDGLCKIGKL---ETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEA 489 (598)
Q Consensus 423 ~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 489 (598)
.|+..+-..+..++++..+. .+++.+++.+.+.+..-....+-.|.-++.+.|++++|.++.+.+++
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 34444444444444444332 23444444444332111122333334444444555555555544444
No 247
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=90.07 E-value=1.9 Score=44.62 Aligned_cols=51 Identities=6% Similarity=-0.016 Sum_probs=41.6
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 047932 458 LPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFIRNN 510 (598)
Q Consensus 458 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 510 (598)
+-+..-|..|+....+.+.+++|.+.|+..+.. .-+...+..|+..|.+.+
T Consensus 610 kks~lEWEiLGlla~RL~h~~EA~~a~~~~l~~--RFs~ka~~kLLeiY~~~~ 660 (754)
T 4gns_B 610 KHSGLEWELLGLIMLRTWHWEDAVACLRTSIVA--RFDPVSCQQLLKIYLQPP 660 (754)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHSS--SCCHHHHHHHHHHHHSCC
T ss_pred ccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--ccCHHHHHHHHHHHHhcC
Confidence 345666888888888889999999999988864 578888999999998766
No 248
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=89.98 E-value=4.7 Score=30.88 Aligned_cols=67 Identities=10% Similarity=0.115 Sum_probs=28.3
Q ss_pred CCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccccchhHHHHHHHhc
Q 047932 459 PNVVTYNIMIHGLCNDGQM---DKAHDLFLDMEAKGVEPDCVIFNTIMLGFIRNNETSKSSRGKLMSQMSSC 527 (598)
Q Consensus 459 p~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 527 (598)
|+..+-..+..++++..+. .+++.+++.+.+.+-.-....+..+.-++.+.|++++|.+ +.+.+.+.
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~--y~d~lL~~ 107 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKR--YVDTLFEH 107 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHH--HHHHHHTT
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHH--HHHHHHhh
Confidence 3444444444444443322 2344444444443200123333444444555555555555 55555444
No 249
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=89.86 E-value=11 Score=34.12 Aligned_cols=114 Identities=17% Similarity=0.139 Sum_probs=61.3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHH----HHHHHHHCCCCCCHhhHHHH
Q 047932 182 VTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTYNSLIHCFSHADDWNEAKR----LFIKMMDQGVHPNVVTFSVI 257 (598)
Q Consensus 182 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~----~~~~~~~~~~~~~~~~~~~l 257 (598)
..|.++..-|.+.+++++|++++..-.. .+.+.|+...|-+ +++...+.+.+++......+
T Consensus 34 Q~~Rtl~~Ry~~~~~~~eAidlL~~ga~---------------~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl 98 (312)
T 2wpv_A 34 QTLRTIANRYVRSKSYEHAIELISQGAL---------------SFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARL 98 (312)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 3455556666777777777777654332 1333444444433 33444445666666666666
Q ss_pred HHHHHhCCCHH-HHHHHHHHHH----hcC--CCcCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 047932 258 VDELCKNGKME-EASRLLDLMI----QIG--VHPNTFVYNTLMDGFCLTGRVNHAKELFV 310 (598)
Q Consensus 258 ~~~~~~~g~~~-~a~~~~~~~~----~~~--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 310 (598)
+..+.....-+ .-.++++.++ +.| ..-++.....+...|.+.|++.+|+..|-
T Consensus 99 ~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 99 VRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp HHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 65554432111 1122222222 222 12366777777778888888877776664
No 250
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=89.12 E-value=6.8 Score=43.41 Aligned_cols=150 Identities=10% Similarity=0.039 Sum_probs=95.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhc--------------------
Q 047932 221 SLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQI-------------------- 280 (598)
Q Consensus 221 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------------------- 280 (598)
.++..+...+..+.+.++..- .+.+......+..++...|++++|...|++....
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~-----~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHH-----SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHT
T ss_pred HHHHHHHHhhhHHHHHHHhhh-----ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccc
Confidence 345555556666555554322 1223333344566667777777777777554210
Q ss_pred C--CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh----hhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCC
Q 047932 281 G--VHPNTFVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDV----VSYTTLINGYCKTKNVEEALNLYRKMLPKGIRP 354 (598)
Q Consensus 281 ~--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 354 (598)
. ...-..-|..++..+.+.|.++.+.++-....+...+.+. ..|..+...+...|++++|...+-.+.....
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~-- 969 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL-- 969 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--
Confidence 0 0111234677888999999999999888777654322222 2578889999999999999999988876533
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHH
Q 047932 355 TVVTYSTLFLGLFEVHQVEHALK 377 (598)
Q Consensus 355 ~~~~~~~l~~~~~~~~~~~~a~~ 377 (598)
-...+..++..++..+..+.-..
T Consensus 970 r~~cLr~LV~~lce~~~~~~L~~ 992 (1139)
T 4fhn_B 970 KKSCLLDFVNQLTKQGKINQLLN 992 (1139)
T ss_dssp CHHHHHHHHHHHHHHCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCChhhhhC
Confidence 45677778887787777665543
No 251
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=87.65 E-value=32 Score=36.59 Aligned_cols=154 Identities=14% Similarity=0.119 Sum_probs=69.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHH-HHH---HHHHHHHhcC
Q 047932 295 GFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVV-TYS---TLFLGLFEVH 370 (598)
Q Consensus 295 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~---~l~~~~~~~~ 370 (598)
.+.-.|+.+....++..+.+.. ..+..-...+.-++...|+.+.+..+++.+... .+.. -|. ++.-+|+..|
T Consensus 499 i~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~---~dp~vRygaa~alglAyaGTG 574 (963)
T 4ady_A 499 CMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGRQELADDLITKMLAS---DESLLRYGGAFTIALAYAGTG 574 (963)
T ss_dssp HHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTSC
T ss_pred hhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCCC
Confidence 3445556555556665555431 111122222333334556666666666665543 1221 121 2233455566
Q ss_pred CHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCH-HHHHHHH
Q 047932 371 QVEHALKLFDEMQHNDVAADTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKL-ETAWELF 449 (598)
Q Consensus 371 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~ 449 (598)
+.....+++..+.... ..+......+.-++...|+.+.+.++++.+.+.+ .|.+..-..+.-+....|.. .+++.++
T Consensus 575 n~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L 652 (963)
T 4ady_A 575 NNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVL 652 (963)
T ss_dssp CHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHH
T ss_pred CHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHH
Confidence 6666666666666532 2222222222233344555555555555554432 33333333333333333332 4566666
Q ss_pred HHHHh
Q 047932 450 QSLSR 454 (598)
Q Consensus 450 ~~~~~ 454 (598)
..+..
T Consensus 653 ~~L~~ 657 (963)
T 4ady_A 653 DPLTK 657 (963)
T ss_dssp HHHHT
T ss_pred HHHcc
Confidence 66653
No 252
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=87.57 E-value=26 Score=35.48 Aligned_cols=21 Identities=5% Similarity=-0.018 Sum_probs=12.7
Q ss_pred HHHHhcCCccccchhHHHHHHHh
Q 047932 504 LGFIRNNETSKSSRGKLMSQMSS 526 (598)
Q Consensus 504 ~~~~~~g~~~~A~~~~~~~~~~~ 526 (598)
..+...|....|.. .+..+.+
T Consensus 389 ~~L~~~g~~~~a~~--ew~~~~~ 409 (618)
T 1qsa_A 389 RELMYWNLDNTARS--EWANLVK 409 (618)
T ss_dssp HHHHHTTCHHHHHH--HHHHHHT
T ss_pred HHHHHCCChhhHHH--HHHHHHh
Confidence 34556676666666 6666553
No 253
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=87.53 E-value=8.6 Score=29.90 Aligned_cols=67 Identities=12% Similarity=-0.007 Sum_probs=31.9
Q ss_pred CCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047932 423 ELDIISYSCLIDGLCKIGK---LETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEA 489 (598)
Q Consensus 423 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 489 (598)
.|+..+-..+..++++..+ ..+++.+++.+...+..-.....-.|.-++.+.|++++|.++.+.+++
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 3455555555555555543 234555555554432111122333344455555555555555555555
No 254
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=87.09 E-value=3.4 Score=29.75 Aligned_cols=60 Identities=15% Similarity=0.201 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHH
Q 047932 123 EAAALFTKLRVFGCEPDVFTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIID 189 (598)
Q Consensus 123 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~ 189 (598)
+.++-++.+...+.-|+..+..+.+.+|.+.+++..|.++|+.+...- .+...+|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-------~~~~~iY~~~lq 87 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-------GPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-------TTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-------cCchhhHHHHHH
Confidence 566677777778889999999999999999999999999999987653 334456766654
No 255
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=87.08 E-value=4.6 Score=32.37 Aligned_cols=123 Identities=10% Similarity=0.070 Sum_probs=72.6
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHhhC-CCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCC
Q 047932 180 DTVTYNTIIDGVCKEGFVDKAMELFLQMKDE-NINPN-------VVTYNSLIHCFSHADDWNEAKRLFIKMMDQG--VHP 249 (598)
Q Consensus 180 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~ 249 (598)
..+++..-+..+...|.++.|+-+...+... +..|+ ..++..+..++...+++.+|...|++.++.. +.-
T Consensus 19 ~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k 98 (167)
T 3ffl_A 19 SHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSK 98 (167)
T ss_dssp --CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhc
Confidence 3556666778888999999999888876543 12233 1256678899999999999999999975431 111
Q ss_pred CHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047932 250 NVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTLMDGFCLTGRVNHAKELFVSMESN 315 (598)
Q Consensus 250 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 315 (598)
+..+...+. ....... ......+...-.-+..||.+.+++++|+.+++.+...
T Consensus 99 ~~s~~~~~~----~~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k 151 (167)
T 3ffl_A 99 TSKVRPSTG----NSASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR 151 (167)
T ss_dssp -------------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG
T ss_pred CCCcccccc----ccCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch
Confidence 111111110 0000000 0112234455555778888889999988888876544
No 256
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=85.67 E-value=21 Score=32.59 Aligned_cols=168 Identities=11% Similarity=0.095 Sum_probs=86.1
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH----HHHHHCCCCCCHhhHHHH
Q 047932 182 VTYNTIIDGVCKEGFVDKAMELFLQMKDENINPNVVTYNSLIHCFSHADDWNEAKRLF----IKMMDQGVHPNVVTFSVI 257 (598)
Q Consensus 182 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~----~~~~~~~~~~~~~~~~~l 257 (598)
.+|.++..-|.+.+++++|++++..-.. .+.+.|+...+-++. +...+.+++++......+
T Consensus 36 Q~~RTi~~Ry~~~k~y~eAidLL~~GA~---------------~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL 100 (336)
T 3lpz_A 36 QETRLVAARYSKQGNWAAAVDILASVSQ---------------TLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKL 100 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 3455566667788888888887654332 133344444333333 444445666666666666
Q ss_pred HHHHHhCCCHH-HHHHHHHHHH----hcC--CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 047932 258 VDELCKNGKME-EASRLLDLMI----QIG--VHPNTFVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLING 330 (598)
Q Consensus 258 ~~~~~~~g~~~-~a~~~~~~~~----~~~--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 330 (598)
+..+.....-+ .-.++++.++ +.| ..-|+.....+...|.+.+++.+|+..|- . |..+++..+..++.-
T Consensus 101 ~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--l--g~~~s~~~~a~mL~e 176 (336)
T 3lpz_A 101 LGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV--L--GTKESPEVLARMEYE 176 (336)
T ss_dssp HHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT--T--SCTTHHHHHHHHHHH
T ss_pred HHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH--h--cCCchHHHHHHHHHH
Confidence 66655544311 1122222222 222 23466777777788888888888877762 1 212233455444433
Q ss_pred HHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 047932 331 YCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFEVHQVEHALKLFDEMQ 383 (598)
Q Consensus 331 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 383 (598)
+...+... .++...-.+++ .|...++...|..+++...
T Consensus 177 w~~~~~~~--------------e~dlfiaRaVL-~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 177 WYKQDESH--------------TAPLYCARAVL-PYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp HHHTSCGG--------------GHHHHHHHHHH-HHHHTTCHHHHHHHHHHHH
T ss_pred HHHhcCCc--------------cHHHHHHHHHH-HHHHhCCHHHHHHHHHHHH
Confidence 33333211 11222223333 3455677777777665544
No 257
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=85.54 E-value=11 Score=29.27 Aligned_cols=67 Identities=10% Similarity=0.115 Sum_probs=30.8
Q ss_pred CCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccccchhHHHHHHHhc
Q 047932 459 PNVVTYNIMIHGLCNDGQM---DKAHDLFLDMEAKGVEPDCVIFNTIMLGFIRNNETSKSSRGKLMSQMSSC 527 (598)
Q Consensus 459 p~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 527 (598)
|+..+-..+..++.+..+. .+++.+++.+...+-.-.......+.-++.+.|++++|.+ +.+.+++.
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~--y~d~lL~~ 106 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKR--YVDTLFEH 106 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHH--HHHHHHHT
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHH--HHHHHHhc
Confidence 4444444445555544332 3445555555443211122333344445555555555555 55555554
No 258
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=85.41 E-value=8 Score=33.93 Aligned_cols=112 Identities=10% Similarity=0.017 Sum_probs=77.2
Q ss_pred cccCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH----HhHHHHHhccHHHH
Q 047932 49 DINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPDL----YTHSILINCRIMEA 124 (598)
Q Consensus 49 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~ll~~~~~~a 124 (598)
+++.|++++|+......++..|. |...-..+++.++-.|++++|..-++...+. .|+. ..|..+|.+
T Consensus 7 ll~~g~L~~al~~~~~~VR~~P~--da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l--~p~~~~~a~~yr~lI~a----- 77 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKASPK--DASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYLPGASQLRHLVKA----- 77 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHH-----
T ss_pred HHhCCCHHHHHHHHHHHHHhCCc--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CchhhHHHHHHHHHHHH-----
Confidence 57899999999999999999997 9999999999999999999999999888765 3432 233333322
Q ss_pred HHHHHHHHHcCCCCC-----HhhHHHHHHHHH--hcCChhHHHHHHHHHHhc
Q 047932 125 AALFTKLRVFGCEPD-----VFTYNTLINGLC--RTGHTIVALNLFEEMANG 169 (598)
Q Consensus 125 ~~~~~~~~~~~~~~~-----~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~ 169 (598)
...-.+...-+-.|. ..-...++.++. ..|+.++|..+-+.+...
T Consensus 78 E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 78 AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 122222222111221 122334444444 569999999998888664
No 259
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=84.99 E-value=29 Score=33.53 Aligned_cols=189 Identities=11% Similarity=0.020 Sum_probs=96.4
Q ss_pred CCHHHHHHHHHHHHhc-----CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHH----HhcC
Q 047932 265 GKMEEASRLLDLMIQI-----GVHPNTFVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDVVSYTTLINGY----CKTK 335 (598)
Q Consensus 265 g~~~~a~~~~~~~~~~-----~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~ 335 (598)
|+++.|++.+-.+.+. +..........++..|...|+++...+.+..+...... .......+++.+ ....
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~q-lk~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQ-LKLSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTT-SHHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhcCC
Confidence 6777787777655532 23445667777888888888888877777665543211 112222333222 1222
Q ss_pred CHHH--HHHHHHHHcc--CC-CCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC--CCCcC---HHHHHHHHHHHH
Q 047932 336 NVEE--ALNLYRKMLP--KG-IRP---TVVTYSTLFLGLFEVHQVEHALKLFDEMQHN--DVAAD---TYIYNTFIDGLC 402 (598)
Q Consensus 336 ~~~~--A~~~~~~~~~--~~-~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~---~~~~~~l~~~~~ 402 (598)
..+. -..+...... .| +-. .......+...+...|++.+|..++..+... +.... ...+...++.|.
T Consensus 109 ~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l 188 (445)
T 4b4t_P 109 SLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSI 188 (445)
T ss_dssp TTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 2221 1111211111 01 111 1122344556666677777777777666532 11111 334555566666
Q ss_pred HcCCHHHHHHHHHHHh----hCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 047932 403 KNGFVLEALELFCAIG----NSKYELD--IISYSCLIDGLCKIGKLETAWELFQSLSR 454 (598)
Q Consensus 403 ~~g~~~~A~~~~~~~~----~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 454 (598)
..+++.+|..+++++. .....|+ ...+...+..+...+++.+|.+.|.++.+
T Consensus 189 ~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 189 LKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 6777777776666653 1111121 12345555666666666666666665544
No 260
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=81.15 E-value=13 Score=26.79 Aligned_cols=63 Identities=10% Similarity=0.165 Sum_probs=45.5
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 047932 196 FVDKAMELFLQMKDENINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVD 259 (598)
Q Consensus 196 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 259 (598)
+.-+..+-++.+-...+.|++....+.+++|-+.+++..|.++++-++.. ......+|..++.
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHH
Confidence 44566677777777778888888888888888888888888888887654 2333445665553
No 261
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=81.11 E-value=14 Score=35.54 Aligned_cols=98 Identities=10% Similarity=-0.053 Sum_probs=61.3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHhhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCHhh--H
Q 047932 182 VTYNTIIDGVCKEGFVDKAMELFLQMKDE--NINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQ---GVHPNVVT--F 254 (598)
Q Consensus 182 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~--~ 254 (598)
.++..+...|.+.|+++.|.+.|.++... +...-...+-.+++.+...+++..+...+.++... +..++... .
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 35667888888899999999988888764 23334556777888888888888888888876542 11122110 0
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHh
Q 047932 255 SVIVDELCKNGKMEEASRLLDLMIQ 279 (598)
Q Consensus 255 ~~l~~~~~~~g~~~~a~~~~~~~~~ 279 (598)
...+..+...+++..|.+.|-++..
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhc
Confidence 1111223345666666666655443
No 262
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=77.22 E-value=22 Score=28.10 Aligned_cols=52 Identities=10% Similarity=0.123 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 047932 57 EALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFP 108 (598)
Q Consensus 57 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 108 (598)
++.++|..+...+-...-+..|...+..+-..|++.+|..+|+.-++.+-.|
T Consensus 83 dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 83 DLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp CHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred CHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 3666666666555443455556666666666677777777766666665555
No 263
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=76.82 E-value=31 Score=28.69 Aligned_cols=56 Identities=14% Similarity=0.083 Sum_probs=36.1
Q ss_pred CCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 047932 440 GKLETAWELFQSLSRVGLLPN-VVTYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPD 495 (598)
Q Consensus 440 g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 495 (598)
+...++..+|..|...|+-.. ...|......+...|++++|.++|+.-++.+-.|-
T Consensus 93 ~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 93 NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY 149 (202)
T ss_dssp TCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred cccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 345667777777766554433 44566666666677777777777777777665554
No 264
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=76.39 E-value=24 Score=27.07 Aligned_cols=30 Identities=3% Similarity=0.069 Sum_probs=11.7
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 047932 422 YELDIISYSCLIDGLCKIGKLETAWELFQS 451 (598)
Q Consensus 422 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 451 (598)
..|++.+....+.+|.+.+++..|.++|+-
T Consensus 84 lVPeP~Ii~AALrAcRRvNDfalAVR~lE~ 113 (152)
T 2y69_E 84 LVPEPKIIDAALRACRRLNDFASAVRILEV 113 (152)
T ss_dssp BCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 333333333333333333333333333333
No 265
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=76.26 E-value=5.6 Score=34.87 Aligned_cols=55 Identities=22% Similarity=0.279 Sum_probs=35.3
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 047932 149 GLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDE 210 (598)
Q Consensus 149 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 210 (598)
.+.+.|++++|++....-++.. |.|...-..++..+|-.|++++|.+-++...+.
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~-------P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS-------PKDASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-------CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 3456666667766666666654 556666666667777777777776666666553
No 266
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=75.98 E-value=24 Score=27.01 Aligned_cols=62 Identities=10% Similarity=0.192 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 047932 197 VDKAMELFLQMKDENINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVD 259 (598)
Q Consensus 197 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 259 (598)
.-+..+-++.+...++.|++......+++|-+.+|+..|.++|+-++.. ..+...+|..++.
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lq 130 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHH
Confidence 3455666666667778888888888888888888888888888887665 3334445666553
No 267
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=72.32 E-value=66 Score=30.31 Aligned_cols=93 Identities=9% Similarity=-0.036 Sum_probs=59.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhC--CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHhhHH---
Q 047932 186 TIIDGVCKEGFVDKAMELFLQMKDE--NINP---NVVTYNSLIHCFSHADDWNEAKRLFIKMMDQ--GVHPNVVTFS--- 255 (598)
Q Consensus 186 ~li~~~~~~g~~~~A~~~~~~~~~~--~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~--- 255 (598)
.++..|...|++.+|.+++..+.+. .... -...+..-+..|...+++.++...+...... .+.+++....
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 5788999999999999888888763 1111 1234555667788888988888888876542 1223332221
Q ss_pred -HHHHHHH-hCCCHHHHHHHHHHHH
Q 047932 256 -VIVDELC-KNGKMEEASRLLDLMI 278 (598)
Q Consensus 256 -~l~~~~~-~~g~~~~a~~~~~~~~ 278 (598)
.-...+. ..+++..|...|-+..
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHH
Confidence 1122345 6788888887776654
No 268
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=71.99 E-value=32 Score=28.59 Aligned_cols=56 Identities=18% Similarity=0.199 Sum_probs=36.4
Q ss_pred cCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 047932 194 EGFVDKAMELFLQMKDENINP-NVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHP 249 (598)
Q Consensus 194 ~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 249 (598)
.+....+.++|..|...|+-- -...|......+-..|++.+|.++|+.-++.+-.|
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 334567777777777665432 34456666677777777777777777777665555
No 269
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=69.63 E-value=42 Score=26.91 Aligned_cols=53 Identities=9% Similarity=0.073 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC
Q 047932 57 EALCIFDYMLRMHPSPPPVSSFNILFGCLAKNKHYDTVLSLFKRLNSTGLFPD 109 (598)
Q Consensus 57 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 109 (598)
.+.++|..+...+-...-+..|...+..+-..|++.+|..+|+.-++.+..|-
T Consensus 78 ~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~ 130 (164)
T 2wvi_A 78 EPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPL 130 (164)
T ss_dssp CHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 46667777766655545566677777777777777777777777777766664
No 270
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=68.95 E-value=83 Score=30.10 Aligned_cols=101 Identities=10% Similarity=-0.097 Sum_probs=71.9
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhhCC-CCCCHHHH
Q 047932 141 FTYNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMELFLQMKDEN-INPNVVTY 219 (598)
Q Consensus 141 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~ 219 (598)
.++..++..|.+.|+++.|.+.|.++...-.. ...-...+..++..+...+++..+...+.++...- -.++....
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~----~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~ 207 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAIS----TGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERR 207 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTC----CCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC----hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHH
Confidence 36788999999999999999999999864311 12335678888999999999999999998876431 11222222
Q ss_pred H----HHHHHHHhcCCHHHHHHHHHHHHHC
Q 047932 220 N----SLIHCFSHADDWNEAKRLFIKMMDQ 245 (598)
Q Consensus 220 ~----~l~~~~~~~~~~~~a~~~~~~~~~~ 245 (598)
+ .-+..+...+++..|...|-+....
T Consensus 208 ~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 208 NRYKTYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHHHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 2 1223345678999998888776553
No 271
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=60.30 E-value=50 Score=28.01 Aligned_cols=47 Identities=15% Similarity=0.176 Sum_probs=30.5
Q ss_pred hHHHHHHHHHHhCCCCCCHHhHH----HHHhc--cHHHHHHHHHHHHHcCCCC
Q 047932 92 DTVLSLFKRLNSTGLFPDLYTHS----ILINC--RIMEAAALFTKLRVFGCEP 138 (598)
Q Consensus 92 ~~A~~~~~~~~~~~~~p~~~~~~----~ll~~--~~~~a~~~~~~~~~~~~~~ 138 (598)
+++.++|..|...||--....|- .++.. ++.+|..+|+.-++.+..|
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 46777888888877755544332 22222 7888888888877765555
No 272
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=59.71 E-value=62 Score=25.48 Aligned_cols=51 Identities=18% Similarity=0.185 Sum_probs=31.1
Q ss_pred HHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 047932 445 AWELFQSLSRVGLLPN-VVTYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPD 495 (598)
Q Consensus 445 A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 495 (598)
+..+|..|...|+-.. ...|......+...|++++|.++|+.-++.+-.|-
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 135 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPR 135 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 5666666666554433 44555666666666777777777776666655553
No 273
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=57.41 E-value=1.2e+02 Score=28.04 Aligned_cols=71 Identities=11% Similarity=0.184 Sum_probs=40.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHhhCCCCcCHHHHH
Q 047932 324 YTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFEVHQ--VEHALKLFDEMQHNDVAADTYIYN 395 (598)
Q Consensus 324 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~ 395 (598)
...++.-|...++.++|...++++...... ...+...+..++-+.++ .+....++..+...++-+......
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~ 292 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKR 292 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHH
Confidence 355667777788888888888887643221 12333444444444332 345667777777666544443333
No 274
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=55.77 E-value=75 Score=31.09 Aligned_cols=23 Identities=9% Similarity=0.184 Sum_probs=0.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHH
Q 047932 80 ILFGCLAKNKHYDTVLSLFKRLN 102 (598)
Q Consensus 80 ~l~~~~~~~g~~~~A~~~~~~~~ 102 (598)
.++-.+..++++++|.++-..+.
T Consensus 141 L~~i~L~d~k~~~~~~~~~~~~~ 163 (523)
T 4b4t_S 141 LVQLFLWDSKELEQLVEFNRKVV 163 (523)
T ss_dssp -----------------------
T ss_pred HHHHHHhccccHHHHHHHHHHHH
Confidence 33445567778888777766554
No 275
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=55.75 E-value=78 Score=25.34 Aligned_cols=52 Identities=15% Similarity=0.163 Sum_probs=32.4
Q ss_pred HHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 047932 445 AWELFQSLSRVGLLPN-VVTYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPDC 496 (598)
Q Consensus 445 A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 496 (598)
+..+|..|...|+-.. ...|......+-..|++.+|.++|+.-++.+-.|-.
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~ 131 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLE 131 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Confidence 5556666666554433 445566666666677777777777777766655544
No 276
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=53.96 E-value=59 Score=23.40 Aligned_cols=51 Identities=8% Similarity=0.072 Sum_probs=24.2
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047932 189 DGVCKEGFVDKAMELFLQMKDENINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQ 245 (598)
Q Consensus 189 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 245 (598)
..+...|++++|..+.+.+. .||...|..|.. .+.|-.+++...+..+...
T Consensus 48 sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~~la~s 98 (116)
T 2p58_C 48 SSLMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALESRLNRLARS 98 (116)
T ss_dssp HHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTC
T ss_pred HHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHHHHHhC
Confidence 34445555555555544433 345555544332 3444455555555444443
No 277
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=52.66 E-value=1.5e+02 Score=27.81 Aligned_cols=166 Identities=10% Similarity=-0.009 Sum_probs=98.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHhhC-CCCC---CHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCCCHhhH--
Q 047932 182 VTYNTIIDGVCKEGFVDKAMELFLQMKDE-NINP---NVVTYNSLIHCFSHA-DDWNEAKRLFIKMMDQGVHPNVVTF-- 254 (598)
Q Consensus 182 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~-- 254 (598)
.....|...|.+.|+.++..+++.....- +.-+ .......++..+... +..+.-.++..+.++... -...+|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~-~~~r~flr 98 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAK-QEKRTFLR 98 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHH-HTTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 44567889999999999999988876542 1111 122345666666553 444444555555443211 111223
Q ss_pred ----HHHHHHHHhCCCHHHHHHHHHHHHhcCCCcC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCChhh
Q 047932 255 ----SVIVDELCKNGKMEEASRLLDLMIQIGVHPN-----TFVYNTLMDGFCLTGRVNHAKELFVSMESNG--CMHDVVS 323 (598)
Q Consensus 255 ----~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~ 323 (598)
..++..|...|++.+|.+++..+.+.-...| ..++..-+..|...+++.++...+....... +.+++..
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i 178 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKV 178 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHH
Confidence 2567788889999999888888776411111 2234555677888888888888887765321 1122222
Q ss_pred HH----HHHHHHH-hcCCHHHHHHHHHHHc
Q 047932 324 YT----TLINGYC-KTKNVEEALNLYRKML 348 (598)
Q Consensus 324 ~~----~l~~~~~-~~~~~~~A~~~~~~~~ 348 (598)
.. .-...+. ..++|..|...|-+..
T Consensus 179 ~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 179 QGALDLQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHhccCHHHHHHHHHHHH
Confidence 11 1123455 6788888887777653
No 278
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=46.40 E-value=79 Score=22.72 Aligned_cols=52 Identities=12% Similarity=0.089 Sum_probs=27.6
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 047932 189 DGVCKEGFVDKAMELFLQMKDENINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQG 246 (598)
Q Consensus 189 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 246 (598)
..+...|++++|..+.+.+. .||...|..|.. .+.|-.+++...+..+...|
T Consensus 47 sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~~la~sg 98 (115)
T 2uwj_G 47 SSLANQGRYQEALAFAHGNP----WPALEPWFALCE--WHLGLGAALDRRLAGLGGSS 98 (115)
T ss_dssp HHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTCS
T ss_pred HHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC
Confidence 44556666666665554433 355555544432 35555555555555555443
No 279
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=46.01 E-value=1.4e+02 Score=25.34 Aligned_cols=115 Identities=13% Similarity=0.078 Sum_probs=74.7
Q ss_pred hHHHHHHHHHHHHc--CCCCCCHHHHHHHHHHHHhc---C-C-hhHHHHHHHHHHhC-----CCCCCHHhHHHHHhc--c
Q 047932 55 PNEALCIFDYMLRM--HPSPPPVSSFNILFGCLAKN---K-H-YDTVLSLFKRLNST-----GLFPDLYTHSILINC--R 120 (598)
Q Consensus 55 ~~~A~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~---g-~-~~~A~~~~~~~~~~-----~~~p~~~~~~~ll~~--~ 120 (598)
.+.....|+..+.. .+. .....|...|.....+ | . -.....++++++.. ...-|+.....-+.. .
T Consensus 51 l~~~r~~fE~~i~~~~~~d-DPL~~w~~YIkW~ee~yP~g~~~~s~L~~lLErc~~~F~~~~rYknD~RyLklWl~Ya~~ 129 (223)
T 4aez_C 51 LQKERMGHERKIETSESLD-DPLQVWIDYIKWTLDNFPQGETKTSGLVTLLERCTREFVRNPLYKDDVRYLRIWMQYVNY 129 (223)
T ss_dssp HHHHHHHHHHHHHHGGGSS-CTHHHHHHHHHHHHHHCTTCCCTTTCHHHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcccCC-CChHHHHHHHHHHHHhCcCCCcchhhHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHc
Confidence 44556666665543 122 3566777777655432 2 2 12355666666544 123444444443333 4
Q ss_pred HHHHHHHHHHHHHcCCCCC-HhhHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 047932 121 IMEAAALFTKLRVFGCEPD-VFTYNTLINGLCRTGHTIVALNLFEEMANGN 170 (598)
Q Consensus 121 ~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 170 (598)
.+++..+|..|...|+... +..|......+...|++.+|.++|+.-++.+
T Consensus 130 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~ 180 (223)
T 4aez_C 130 IDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMK 180 (223)
T ss_dssp CSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 4678899999998876544 4458889999999999999999999998876
No 280
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=39.46 E-value=1.8e+02 Score=24.98 Aligned_cols=23 Identities=22% Similarity=0.158 Sum_probs=17.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhh
Q 047932 187 IIDGVCKEGFVDKAMELFLQMKD 209 (598)
Q Consensus 187 li~~~~~~g~~~~A~~~~~~~~~ 209 (598)
-++.+....++++|.+++++..+
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~ 46 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIES 46 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Confidence 45677778888888888877654
No 281
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=38.66 E-value=2.7e+02 Score=27.28 Aligned_cols=65 Identities=11% Similarity=0.054 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCH--hh-HHHHHHHHHhCCCHHHHHHHHHHHHhc
Q 047932 216 VVTYNSLIHCFSHADDWNEAKRLFIKMMDQG-VHPNV--VT-FSVIVDELCKNGKMEEASRLLDLMIQI 280 (598)
Q Consensus 216 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~--~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~ 280 (598)
...+|.+++.|...+.+++|..+..+..--. ..++. .+ +..+.+.+.-.+++.+|.+.+......
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 4567888888999999999999888764100 01111 12 223466777888888888888887764
No 282
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=38.14 E-value=1.1e+02 Score=22.00 Aligned_cols=50 Identities=10% Similarity=0.077 Sum_probs=23.5
Q ss_pred HHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 047932 331 YCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFEVHQVEHALKLFDEMQHND 386 (598)
Q Consensus 331 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 386 (598)
+...|+|++|..+.+... .||...|.++.. .+.|-.+++...+.++...|
T Consensus 49 LmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~~la~sg 98 (115)
T 2uwj_G 49 LANQGRYQEALAFAHGNP----WPALEPWFALCE--WHLGLGAALDRRLAGLGGSS 98 (115)
T ss_dssp HHHTTCHHHHHGGGTTCC----CGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTCS
T ss_pred HHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC
Confidence 445555555554443322 345444443322 24455555555555554443
No 283
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=37.84 E-value=3.1e+02 Score=29.51 Aligned_cols=108 Identities=10% Similarity=0.074 Sum_probs=63.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-------------------
Q 047932 187 IIDGVCKEGFVDKAMELFLQMKDENINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGV------------------- 247 (598)
Q Consensus 187 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------------------- 247 (598)
++..+...|.++-|.++...+. .+...--.+.++|...|++++|.+.|++.-. |+
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~~-----~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~-gl~~~~~~~~~~~~~~~ll~~ 889 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWLN-----SDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEK 889 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGCC-----SSHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-TTCSSCCSCGGGHHHHHHHHH
T ss_pred HHHHHHHhcHHHHHHHHHhhcC-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHhh-hcccCcccccchhhhhhccCc
Confidence 4555556666665544332222 1333223456666667777777776665421 11
Q ss_pred -CC---CHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcCH----HHHHHHHHHHHhcC
Q 047932 248 -HP---NVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNT----FVYNTLMDGFCLTG 300 (598)
Q Consensus 248 -~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~g 300 (598)
.+ ...-|..++..+-+.+.++.+.+.-+.+++.-...|. ..+..+.++.+..|
T Consensus 890 ~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 890 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp TTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred ccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 01 1136788999999999999999998888875322233 35666677666554
No 284
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=36.82 E-value=2.8e+02 Score=29.86 Aligned_cols=108 Identities=11% Similarity=0.045 Sum_probs=74.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCc-----------------
Q 047932 222 LIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHP----------------- 284 (598)
Q Consensus 222 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~----------------- 284 (598)
++..+...|..+-+.++..- .+.+...-..+.++|...|++++|...|+++-. |+..
T Consensus 816 l~~~L~~~~~~~~a~eL~~~-----~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~-gl~~~~~~~~~~~~~~~ll~~ 889 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEK 889 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGG-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-TTCSSCCSCGGGHHHHHHHHH
T ss_pred HHHHHHHhcHHHHHHHHHhh-----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhh-hcccCcccccchhhhhhccCc
Confidence 66777888888876654422 344555445688899999999999999987532 2210
Q ss_pred ------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh----hhHHHHHHHHHhcC
Q 047932 285 ------NTFVYNTLMDGFCLTGRVNHAKELFVSMESNGCMHDV----VSYTTLINGYCKTK 335 (598)
Q Consensus 285 ------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~ 335 (598)
...-|..++..+-+.+.++.+.++-+..++.--..|. ..|..+.++.+..|
T Consensus 890 ~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 890 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp TTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred ccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 1124778899999999999999998888765322233 35667777766544
No 285
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=36.80 E-value=1.2e+02 Score=21.91 Aligned_cols=50 Identities=10% Similarity=0.130 Sum_probs=22.5
Q ss_pred HHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 047932 331 YCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFEVHQVEHALKLFDEMQHND 386 (598)
Q Consensus 331 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 386 (598)
+...|+|++|..+.+... .||...|.++.. .+.|-.+++...+.++...|
T Consensus 50 LmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~~la~sg 99 (116)
T 2p58_C 50 LMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALESRLNRLARSQ 99 (116)
T ss_dssp HHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTCC
T ss_pred HHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC
Confidence 344555555555444332 344444443322 24444455554444444443
No 286
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=35.09 E-value=2.1e+02 Score=24.44 Aligned_cols=89 Identities=10% Similarity=0.102 Sum_probs=43.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC--CCCC----CHhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHH
Q 047932 222 LIHCFSHADDWNEAKRLFIKMMDQ--GVHP----NVVTFSVIVDELCKNGKMEEASRLLDLMIQIGVHPNTFVYNTLMDG 295 (598)
Q Consensus 222 l~~~~~~~~~~~~a~~~~~~~~~~--~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 295 (598)
-++.+....++++|.+++++..+. +.++ ........+..-.....-.-+..+.+.+.. ..+.......+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHH
Confidence 466788889999999988876542 1121 111112222222222222223333333322 2344444555556
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 047932 296 FCLTGRVNHAKELFVSME 313 (598)
Q Consensus 296 ~~~~g~~~~a~~~~~~~~ 313 (598)
+.+.|+.++|.++|-+..
T Consensus 101 L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHHHH
Confidence 666666666666665443
No 287
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=33.13 E-value=2e+02 Score=23.57 Aligned_cols=91 Identities=14% Similarity=0.046 Sum_probs=36.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 047932 390 DTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIH 469 (598)
Q Consensus 390 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 469 (598)
+..+-...+.++.+.|+.+ +...+..+.. .++..+-...+.++...|..+ +...+..+.+ .++..+-...+.
T Consensus 94 ~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~ 165 (211)
T 3ltm_A 94 DGWVRQSAAVALGQIGDER-AVEPLIKALK---DEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAAD 165 (211)
T ss_dssp SHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCcHH-HHHHHHHHHh---CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHHHHHHHHH
Confidence 3444444444444444432 2222223332 234444444444544444422 3333333332 233333333444
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 047932 470 GLCNDGQMDKAHDLFLDMEA 489 (598)
Q Consensus 470 ~~~~~g~~~~A~~~~~~~~~ 489 (598)
++.+.+. .++...+..+..
T Consensus 166 aL~~~~~-~~~~~~L~~~l~ 184 (211)
T 3ltm_A 166 ALGEIGG-ERVRAAMEKLAE 184 (211)
T ss_dssp HHHHHCS-HHHHHHHHHHHH
T ss_pred HHHHhCc-hhHHHHHHHHHh
Confidence 4444443 344444444443
No 288
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=31.56 E-value=1.9e+02 Score=24.91 Aligned_cols=20 Identities=15% Similarity=0.165 Sum_probs=10.8
Q ss_pred HHHHHHHhcCChhHHHHHHH
Q 047932 145 TLINGLCRTGHTIVALNLFE 164 (598)
Q Consensus 145 ~l~~~~~~~g~~~~A~~~~~ 164 (598)
..+...++.|+.+....+++
T Consensus 7 ~~L~~A~~~g~~~~v~~Ll~ 26 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQLLE 26 (285)
T ss_dssp HHHHHHHHTTCHHHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHH
Confidence 34455566777654444443
No 289
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=31.12 E-value=1.7e+02 Score=22.12 Aligned_cols=23 Identities=17% Similarity=0.336 Sum_probs=11.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHc
Q 047932 326 TLINGYCKTKNVEEALNLYRKML 348 (598)
Q Consensus 326 ~l~~~~~~~~~~~~A~~~~~~~~ 348 (598)
.++.-|...|+.++|...++++.
T Consensus 12 ~ll~EY~~~~D~~Ea~~cl~eL~ 34 (129)
T 2nsz_A 12 MLLKEYLLSGDISEAEHCLKELE 34 (129)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCHHHHHHHHHHhC
Confidence 34444555555555555555543
No 290
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=31.04 E-value=1.4e+02 Score=23.45 Aligned_cols=23 Identities=17% Similarity=0.336 Sum_probs=11.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHc
Q 047932 326 TLINGYCKTKNVEEALNLYRKML 348 (598)
Q Consensus 326 ~l~~~~~~~~~~~~A~~~~~~~~ 348 (598)
.++.-|...|+.++|...++++.
T Consensus 14 ~lL~EY~~~~D~~EA~~cl~EL~ 36 (152)
T 2ion_A 14 MLLKEYLLSGDISEAEHCLKELE 36 (152)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCHHHHHHHHHHhC
Confidence 34444555555555555555543
No 291
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=29.94 E-value=2.4e+02 Score=23.34 Aligned_cols=93 Identities=19% Similarity=0.144 Sum_probs=0.0
Q ss_pred HHHHHHh---cCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHhcCC-----HHHHHHHHHHHhhCCCCcCHHHHHHHH
Q 047932 327 LINGYCK---TKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFEVHQ-----VEHALKLFDEMQHNDVAADTYIYNTFI 398 (598)
Q Consensus 327 l~~~~~~---~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~~~~~~~~~~l~ 398 (598)
+++++.+ -.+.+.|+-.+-+|++.|..|....-..++.+.-..|. ...|...++.....|.+--...+...+
T Consensus 10 ~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE~~i~Laqav 89 (201)
T 3bge_A 10 LISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGNADPRAMQVALAAWDCFTRVGAYEGERAIAQAI 89 (201)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTTHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHCCcHHHHHHHHHH
Q ss_pred HHHHHcCCHHHHHHHHHHHhh
Q 047932 399 DGLCKNGFVLEALELFCAIGN 419 (598)
Q Consensus 399 ~~~~~~g~~~~A~~~~~~~~~ 419 (598)
..++.+-+...+...++.+.+
T Consensus 90 iyLA~aPKSNs~y~A~~~A~~ 110 (201)
T 3bge_A 90 IYLSVAPKSNAVYTAFNTAKQ 110 (201)
T ss_dssp HHHHHSCCCCHHHHHHHHHHH
T ss_pred HHHHcCCccHHHHHHHHHHHH
No 292
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=29.76 E-value=2.1e+02 Score=22.73 Aligned_cols=52 Identities=12% Similarity=0.001 Sum_probs=32.7
Q ss_pred HcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHH-H-----HHhcCCHHHHHHHHHHHHH
Q 047932 438 KIGKLETAWELFQSLSRVGLLP--NVVTYNIMIH-G-----LCNDGQMDKAHDLFLDMEA 489 (598)
Q Consensus 438 ~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~-~-----~~~~g~~~~A~~~~~~~~~ 489 (598)
..|++-+|-++|+..-.....+ +...|..||. . ..+.|+...|..++.+...
T Consensus 44 n~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 44 NSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred hCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4477777777777775543334 3445555665 2 2356788888888777764
No 293
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=27.97 E-value=4.8e+02 Score=26.29 Aligned_cols=48 Identities=13% Similarity=-0.008 Sum_probs=28.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 047932 433 IDGLCKIGKLETAWELFQSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDL 483 (598)
Q Consensus 433 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 483 (598)
+..+...|....|...+..+.+. . +......+.......|.++.++..
T Consensus 388 ~~~L~~~g~~~~a~~ew~~~~~~-~--~~~~~~~la~~a~~~~~~~~~v~~ 435 (618)
T 1qsa_A 388 VRELMYWNLDNTARSEWANLVKS-K--SKTEQAQLARYAFNNQWWDLSVQA 435 (618)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTT-C--CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHCCChhhHHHHHHHHHhc-C--CHHHHHHHHHHHHHCCChHHHHHH
Confidence 44566778888888888877653 2 323233444444456666655543
No 294
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=26.61 E-value=2e+02 Score=22.39 Aligned_cols=44 Identities=7% Similarity=0.128 Sum_probs=19.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCC
Q 047932 222 LIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNG 265 (598)
Q Consensus 222 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 265 (598)
++..+...+..-.|.++++.+.+.+...+..|....+..+...|
T Consensus 32 IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 32 VVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 33333343444445555555544433334433333344444443
No 295
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=26.43 E-value=4.3e+02 Score=25.24 Aligned_cols=30 Identities=17% Similarity=-0.007 Sum_probs=18.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047932 214 PNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQ 245 (598)
Q Consensus 214 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 245 (598)
.+......++.. ..|+..++..+++.+...
T Consensus 192 i~~~al~~L~~~--~~Gd~R~lln~Le~a~~~ 221 (447)
T 3pvs_A 192 LPDETRRAIAEL--VNGDARRALNTLEMMADM 221 (447)
T ss_dssp CCHHHHHHHHHH--HCSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHH--CCCCHHHHHHHHHHHHHh
Confidence 455555555554 467777777777776543
No 296
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=26.06 E-value=85 Score=27.33 Aligned_cols=14 Identities=14% Similarity=0.171 Sum_probs=6.2
Q ss_pred HhcCCHHHHHHHHH
Q 047932 332 CKTKNVEEALNLYR 345 (598)
Q Consensus 332 ~~~~~~~~A~~~~~ 345 (598)
+..|+.+-+..+++
T Consensus 227 ~~~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 227 VEKKHLGLVQRLLE 240 (285)
T ss_dssp HHTTCHHHHHHHHH
T ss_pred HHcCCHHHHHHHHh
Confidence 34455544444433
No 297
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=26.03 E-value=4.4e+02 Score=25.19 Aligned_cols=25 Identities=24% Similarity=0.426 Sum_probs=15.3
Q ss_pred hcCCHHHHHHHHHHHccCCCCCCHH
Q 047932 333 KTKNVEEALNLYRKMLPKGIRPTVV 357 (598)
Q Consensus 333 ~~~~~~~A~~~~~~~~~~~~~~~~~ 357 (598)
+.++.+.|+.++.+|.+.|..|...
T Consensus 267 rgsd~daAl~~la~ml~~Gedp~~i 291 (447)
T 3pvs_A 267 RGSAPDAALYWYARIITAGGDPLYV 291 (447)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHH
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHH
Confidence 3456677777777777666554433
No 298
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=24.19 E-value=97 Score=26.98 Aligned_cols=170 Identities=12% Similarity=-0.011 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 047932 390 DTYIYNTFIDGLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCK-IGKLETAWELFQSLSRVGLLPNVVTYNIMI 468 (598)
Q Consensus 390 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 468 (598)
+......++...-+.+++++.....+.+.+.+...+..--|.|-.+|-. .|....+++++..+.+..-.........++
T Consensus 30 ~re~lv~~AKLaeqaeRYddMv~~MK~v~~~~~eLt~EERNLLSvAYKNvIgarR~swRiissieqkee~~g~~~~~~~i 109 (261)
T 3ubw_A 30 DREDLVYQAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEENKGGEDKLKMI 109 (261)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhccCCchhHHHHHhHHHHhhhccccHHHHHHH
Q ss_pred HHHHhc--CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCc-----------------cccchhHHHHHHHhccc
Q 047932 469 HGLCND--GQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFIRNNET-----------------SKSSRGKLMSQMSSCWS 529 (598)
Q Consensus 469 ~~~~~~--g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-----------------~~A~~~~~~~~~~~~~~ 529 (598)
..|... ........-.-.+++..+-|+..+-.+-+..+--.|++ +.|.+ .++.+.+.-.
T Consensus 110 ~~yr~kIe~EL~~iC~dil~lld~~Lip~a~~~EskVFY~KMKGDYyRYlAE~~~g~~rk~~~e~a~~--aY~~A~~iA~ 187 (261)
T 3ubw_A 110 REYRQMVETELKLICCDILDVLDKHLIPAANTGESKVFYYKMKGDYHRYLAEFATGNDRKEAAENSLV--AYKAASDIAM 187 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccCCcHHHHHHHHHhhccHHHHHHhhcCchHHHHHHHHHHH--HHHHHHHHHH
Q ss_pred CCCCCChHHHHH--------HHHHhCCCCCChhhHHHhhh
Q 047932 530 MCFQPKTLICSI--------SIMLQKDMSPGDTMFSTALL 561 (598)
Q Consensus 530 ~~~~p~~~~~~~--------~~~~~~~~~~a~~~~~~~l~ 561 (598)
..+.|..+.... .+...++.++|..+.++++.
T Consensus 188 ~~L~pThPirLGLaLNfSVFyYEIln~p~~Ac~LAk~AFd 227 (261)
T 3ubw_A 188 TELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFD 227 (261)
T ss_dssp HHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred hhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
No 299
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=22.85 E-value=1.2e+02 Score=21.54 Aligned_cols=40 Identities=15% Similarity=0.022 Sum_probs=31.9
Q ss_pred CChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCCHHHHHHH
Q 047932 154 GHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGFVDKAMEL 203 (598)
Q Consensus 154 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 203 (598)
...++|.++++.+.++| ..+|..++.++...|+..-|..+
T Consensus 51 t~~~~ar~Lld~L~~rG----------~~Af~~F~~aL~et~~~~La~lL 90 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRG----------SQALPLFISCLEDTGQDMLASFL 90 (97)
T ss_dssp CHHHHHHHHHHHHTTSC----------TTHHHHHHHHHHTTTCHHHHHHH
T ss_pred ChHHHHHHHHHHHHHcC----------hHHHHHHHHHHHHcCcHHHHHHH
Confidence 46799999999998887 67889999999877876655443
No 300
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=22.67 E-value=2.1e+02 Score=22.14 Aligned_cols=36 Identities=8% Similarity=-0.084 Sum_probs=14.6
Q ss_pred CCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcC
Q 047932 265 GKMEEASRLLDLMIQIGVHPNTFVYNTLMDGFCLTG 300 (598)
Q Consensus 265 g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 300 (598)
+..-.|.++++.+.+.+...+..|..-.+..+...|
T Consensus 35 ~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 35 MAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp SSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 333344444444444433333333333334444443
No 301
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=22.02 E-value=5.4e+02 Score=24.78 Aligned_cols=111 Identities=12% Similarity=0.158 Sum_probs=62.7
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhCCCHHHHHHH
Q 047932 194 EGFVDKAMELFLQMKDENINPNVVTYNSLIHCFSHADDWNEAKRLFIKMMDQGVHPNVVTFSVIVDELCKNGKMEEASRL 273 (598)
Q Consensus 194 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 273 (598)
..+.+-|.++..+ .|++--...|..-...+...|++++|.++-....+ |+-.+..|.+.+-..-...|+..-.+.+
T Consensus 342 l~n~~lA~~lA~R---~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~-giLRt~~Ti~rFk~vp~~pgq~splL~Y 417 (494)
T 1bpo_A 342 LQNPDLALRMAVR---NNLAGAEELFARKFNALFAQGNYSEAAKVAANAPK-GILRTPDTIRRFQSVPAQPGQTSPLLQY 417 (494)
T ss_dssp TCCHHHHHHHHHH---TTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG-GSSCSHHHHHHHTTSCCCTTSCCHHHHH
T ss_pred cCCHHHHHHHHHh---cCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcc-ccccCHHHHHHHhcCCCCCCCCCHHHHH
Confidence 3556655555433 34444455566666777788888888877665543 3445666665554444445556666667
Q ss_pred HHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHH
Q 047932 274 LDLMIQIGVHPNTFVYNTLMDGFCLTGRVNHAKELF 309 (598)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 309 (598)
|..+.+.| ..+..--..+++.-...|+.+..+..+
T Consensus 418 F~~Ll~~g-~Ln~~ESlEl~r~vL~q~r~~llekWl 452 (494)
T 1bpo_A 418 FGILLDQG-QLNKYESLELCRPVLQQGRKQLLEKWL 452 (494)
T ss_dssp HHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHhccC-ccchHHhhHHhHHHHhccHHHHHHHHH
Confidence 77766665 234433334445555555555444444
No 302
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=21.86 E-value=1.7e+02 Score=19.00 Aligned_cols=42 Identities=12% Similarity=0.053 Sum_probs=20.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 047932 465 NIMIHGLCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFI 507 (598)
Q Consensus 465 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 507 (598)
+.++..++...-.+.++-.+.++...| ..+...|..-++.+.
T Consensus 6 ~Qll~l~Aed~AieDaiy~L~~aL~~g-~I~l~~ylK~vR~La 47 (65)
T 2f6m_A 6 NQLYNLVAQDYALTDTIEALSRMLHRG-TIPLDTFVKQGRELA 47 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 344444444444555555555555555 444445544444443
No 303
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=21.25 E-value=3e+02 Score=21.55 Aligned_cols=64 Identities=13% Similarity=0.155 Sum_probs=37.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCccccCCCHhHHHHHHHHHHhcCC--HHHHHHHHHHHhhCCCC
Q 047932 143 YNTLINGLCRTGHTIVALNLFEEMANGNGEFGVVCKPDTVTYNTIIDGVCKEGF--VDKAMELFLQMKDENIN 213 (598)
Q Consensus 143 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~~~~~~~~ 213 (598)
...++.-|...|+.++|...++++.... .....+...+..++-+.++ .+.+..++..+...++-
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~-------f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~i 77 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPH-------FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 77 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGG-------GHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCc-------chHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 4567888888899999988888874311 1112333334444444322 34566677776665543
No 304
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=21.19 E-value=3.5e+02 Score=22.37 Aligned_cols=87 Identities=11% Similarity=0.203 Sum_probs=0.0
Q ss_pred HhCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCC-----HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC
Q 047932 262 CKNGKMEEASRLLDLMIQIGVHPNTFVYNTLMDGFCLTGR-----VNHAKELFVSMESNGCMHDVVSYTTLINGYCKTKN 336 (598)
Q Consensus 262 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~-----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 336 (598)
.+..+.+.|+-++.+|++.| .|.-..-..++.+....|. ...|...++.....|.|.-.......+-.++..-+
T Consensus 25 iRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE~~i~LaqaviyLA~aPK 103 (204)
T 2r9g_A 25 IRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLPEARIPLADVVVDLCLSPK 103 (204)
T ss_dssp HHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHSCC
T ss_pred HhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCc
Q ss_pred HHHHHHHHHHHcc
Q 047932 337 VEEALNLYRKMLP 349 (598)
Q Consensus 337 ~~~A~~~~~~~~~ 349 (598)
-..+...++...+
T Consensus 104 SNs~y~A~~~A~~ 116 (204)
T 2r9g_A 104 SNSAYMALDAALA 116 (204)
T ss_dssp CCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHH
No 305
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=20.59 E-value=2.6e+02 Score=23.23 Aligned_cols=18 Identities=6% Similarity=0.026 Sum_probs=8.9
Q ss_pred HHHHHHhcCCHHHHHHHH
Q 047932 187 IIDGVCKEGFVDKAMELF 204 (598)
Q Consensus 187 li~~~~~~g~~~~A~~~~ 204 (598)
.+...+..|+.+-+.-++
T Consensus 45 ~L~~A~~~~~~~~v~~Ll 62 (240)
T 3eu9_A 45 LLHWAAINNRIDLVKYYI 62 (240)
T ss_dssp HHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHH
Confidence 344455566655444433
No 306
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=20.50 E-value=4.7e+02 Score=23.47 Aligned_cols=26 Identities=15% Similarity=0.258 Sum_probs=21.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhh
Q 047932 184 YNTIIDGVCKEGFVDKAMELFLQMKD 209 (598)
Q Consensus 184 ~~~li~~~~~~g~~~~A~~~~~~~~~ 209 (598)
...++.-|...|+.++|...++++..
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~~ 31 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLNL 31 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCC
Confidence 35678888889999999999988753
No 307
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=20.48 E-value=6.9e+02 Score=28.00 Aligned_cols=48 Identities=10% Similarity=0.123 Sum_probs=31.2
Q ss_pred HHHHHhhccCCcccccCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Q 047932 36 KFLKERSKSSGQGDINLITPNEALCIFDYMLRMHPSPPPVSSFNILFGCLA 86 (598)
Q Consensus 36 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 86 (598)
.+.+.++..-+.++.+. +.+++.++|+.+.+.+|. ....+...+..+-
T Consensus 1105 ~~~e~~rd~~~~~~~k~-~~~~~~~~~~~l~~~~P~--~l~~~~~~l~~l~ 1152 (1354)
T 3lxu_X 1105 DYAESFRDFQCSQIVKC-ELEMAEKIYNDVVAAHPK--HLQANLLLIQNIE 1152 (1354)
T ss_dssp HHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHHCTT--CTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhc-ChHHHHHHHHHHHHHCCc--cHHHHHHHHHhhh
Confidence 34444444333333333 468899999999999987 6677777776554
No 308
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=20.36 E-value=3.9e+02 Score=22.47 Aligned_cols=51 Identities=4% Similarity=-0.027 Sum_probs=34.9
Q ss_pred cHHHHHHHHHHHHHcCCCCCHh-------hHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 047932 120 RIMEAAALFTKLRVFGCEPDVF-------TYNTLINGLCRTGHTIVALNLFEEMANGN 170 (598)
Q Consensus 120 ~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 170 (598)
=++.|+.+++.+...-.-++.. .-...+..|.+.|.+++|.+++++.....
T Consensus 87 PLESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~~ 144 (235)
T 3bu8_A 87 PLESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSKD 144 (235)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTC
T ss_pred hHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcCC
Confidence 4678888888887643111111 12234667889999999999999987753
No 309
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=20.27 E-value=2.5e+02 Score=21.64 Aligned_cols=63 Identities=6% Similarity=0.008 Sum_probs=40.6
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCccc
Q 047932 450 QSLSRVGLLPNVVTYNIMIHGLCNDGQMDKAHDLFLDMEAKGVEPDCVIFNTIMLGFIRNNETSK 514 (598)
Q Consensus 450 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 514 (598)
+.+.+.|++++..= ..++..+...+ .-.|.++++.+.+.+...+..|...-+..+...|-..+
T Consensus 8 ~~L~~~g~r~T~qR-~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~~ 70 (145)
T 3eyy_A 8 SDLRQRGYRLTPQR-QLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGLVSH 70 (145)
T ss_dssp HHHHTTTCCCCHHH-HHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHcCCCcCHHH-HHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcEEE
Confidence 34455677766442 23344444445 66788888888877656677777777778887776544
No 310
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=20.02 E-value=3.6e+02 Score=21.96 Aligned_cols=122 Identities=15% Similarity=0.056 Sum_probs=57.5
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHHHHHHHH
Q 047932 320 DVVSYTTLINGYCKTKNVEEALNLYRKMLPKGIRPTVVTYSTLFLGLFEVHQVEHALKLFDEMQHNDVAADTYIYNTFID 399 (598)
Q Consensus 320 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 399 (598)
+...-...+.++...++. .+...+..+... ++...-...+.++...++.+ +...+..+.. .++..+-...+.
T Consensus 63 ~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~~---~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~ 134 (211)
T 3ltm_A 63 DAWVRRAAADALGQIGDE-RAVEPLIKALKD---EDGWVRQSAAVALGQIGDER-AVEPLIKALK---DEDWFVRIAAAF 134 (211)
T ss_dssp CHHHHHHHHHHHHHHCCG-GGHHHHHHHTTC---SSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhCCH-HHHHHHHHHHcC---CCHHHHHHHHHHHHHhCcHH-HHHHHHHHHh---CCCHHHHHHHHH
Confidence 333334444444444442 223333333322 34445555555555555532 2333333332 345555555666
Q ss_pred HHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 047932 400 GLCKNGFVLEALELFCAIGNSKYELDIISYSCLIDGLCKIGKLETAWELFQSLSR 454 (598)
Q Consensus 400 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 454 (598)
++...|+.+ +...+..+.+ .++..+-...+.++...+. .++...+..+.+
T Consensus 135 aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l~ 184 (211)
T 3ltm_A 135 ALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALGEIGG-ERVRAAMEKLAE 184 (211)
T ss_dssp HHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCS-HHHHHHHHHHHH
T ss_pred HHHHcCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHh
Confidence 666666533 3444444442 3455555666666666665 334444444443
Done!