Query 047934
Match_columns 344
No_of_seqs 287 out of 2071
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 04:44:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047934.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047934hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03081 pentatricopeptide (PP 100.0 7.9E-32 1.7E-36 282.2 17.6 223 112-344 243-510 (697)
2 PLN03218 maturation of RBCL 1; 100.0 5.2E-30 1.1E-34 275.6 20.6 204 112-328 456-664 (1060)
3 PLN03081 pentatricopeptide (PP 100.0 1.5E-30 3.3E-35 272.5 14.0 216 109-342 139-405 (697)
4 PLN03218 maturation of RBCL 1; 100.0 2.1E-29 4.6E-34 270.9 20.4 186 144-329 510-700 (1060)
5 PLN03077 Protein ECB2; Provisi 100.0 1.1E-29 2.4E-34 271.6 17.5 217 108-344 404-673 (857)
6 PLN03077 Protein ECB2; Provisi 100.0 6.1E-29 1.3E-33 265.9 17.0 203 109-329 203-440 (857)
7 PF13041 PPR_2: PPR repeat fam 99.4 3.8E-13 8.2E-18 93.1 6.6 49 206-254 1-49 (50)
8 PF13041 PPR_2: PPR repeat fam 99.4 5.1E-13 1.1E-17 92.4 6.6 50 241-290 1-50 (50)
9 PRK11788 tetratricopeptide rep 99.2 4.6E-10 1E-14 109.1 14.6 156 154-313 193-353 (389)
10 PRK11788 tetratricopeptide rep 99.2 6.6E-09 1.4E-13 101.0 21.6 169 151-324 151-326 (389)
11 KOG4422 Uncharacterized conser 99.1 3.3E-09 7.2E-14 101.9 16.8 174 152-329 126-328 (625)
12 KOG4422 Uncharacterized conser 99.1 3.7E-09 7.9E-14 101.7 14.4 143 154-304 192-339 (625)
13 PF12854 PPR_1: PPR repeat 98.8 6.3E-09 1.4E-13 66.0 4.1 32 238-269 2-33 (34)
14 PF12854 PPR_1: PPR repeat 98.8 8.8E-09 1.9E-13 65.3 4.0 34 202-235 1-34 (34)
15 TIGR02917 PEP_TPR_lipo putativ 98.8 1.3E-06 2.8E-11 92.2 22.3 173 152-329 714-887 (899)
16 TIGR02917 PEP_TPR_lipo putativ 98.7 1.6E-06 3.5E-11 91.4 21.5 151 154-307 580-732 (899)
17 TIGR02521 type_IV_pilW type IV 98.6 1.9E-05 4.1E-10 69.4 20.8 176 150-328 40-218 (234)
18 TIGR02521 type_IV_pilW type IV 98.4 7.2E-05 1.6E-09 65.7 20.6 155 150-306 74-231 (234)
19 KOG4318 Bicoid mRNA stability 98.4 7.3E-06 1.6E-10 85.2 14.1 83 240-325 201-283 (1088)
20 TIGR00756 PPR pentatricopeptid 98.3 1E-06 2.2E-11 55.0 4.2 33 245-277 2-34 (35)
21 PF13429 TPR_15: Tetratricopep 98.3 1.2E-05 2.7E-10 75.0 12.9 173 152-328 88-263 (280)
22 TIGR00756 PPR pentatricopeptid 98.3 1.4E-06 3.1E-11 54.3 4.2 34 210-243 2-35 (35)
23 PF13812 PPR_3: Pentatricopept 98.2 1.7E-06 3.6E-11 54.1 4.1 32 245-276 3-34 (34)
24 PF13812 PPR_3: Pentatricopept 98.2 2.1E-06 4.5E-11 53.6 4.2 33 209-241 2-34 (34)
25 PRK12370 invasion protein regu 98.2 0.00039 8.4E-09 71.6 22.5 169 154-328 317-490 (553)
26 PRK15174 Vi polysaccharide exp 98.1 0.00036 7.8E-09 73.3 21.2 172 152-327 87-260 (656)
27 PRK15174 Vi polysaccharide exp 98.1 0.0006 1.3E-08 71.7 21.5 152 153-307 189-347 (656)
28 TIGR00990 3a0801s09 mitochondr 98.0 0.00055 1.2E-08 71.2 20.7 153 152-307 342-496 (615)
29 TIGR00990 3a0801s09 mitochondr 98.0 0.00088 1.9E-08 69.7 22.1 171 154-328 307-482 (615)
30 PF13429 TPR_15: Tetratricopep 98.0 6.6E-05 1.4E-09 70.1 12.0 152 152-306 121-276 (280)
31 PF01535 PPR: PPR repeat; Int 98.0 7.1E-06 1.5E-10 49.9 3.1 28 245-272 2-29 (31)
32 PF01535 PPR: PPR repeat; Int 98.0 7.6E-06 1.7E-10 49.8 3.1 31 209-239 1-31 (31)
33 PRK10747 putative protoheme IX 97.9 0.0014 3E-08 64.7 20.0 170 154-330 166-378 (398)
34 PF08579 RPM2: Mitochondrial r 97.9 0.00014 3E-09 58.5 9.6 78 178-255 30-116 (120)
35 PRK10747 putative protoheme IX 97.9 0.0031 6.8E-08 62.2 21.4 154 154-310 97-295 (398)
36 PRK10049 pgaA outer membrane p 97.8 0.0015 3.2E-08 69.9 20.1 154 151-307 282-456 (765)
37 PRK09782 bacteriophage N4 rece 97.8 0.0028 6.1E-08 69.3 22.1 169 153-328 521-692 (987)
38 PRK14574 hmsH outer membrane p 97.8 0.0018 3.8E-08 69.5 19.9 172 151-327 44-217 (822)
39 PF10037 MRP-S27: Mitochondria 97.8 0.00014 3.1E-09 71.8 10.7 114 178-291 71-186 (429)
40 PRK09782 bacteriophage N4 rece 97.8 0.0032 6.9E-08 68.9 21.5 150 152-307 553-706 (987)
41 PRK14574 hmsH outer membrane p 97.8 0.0035 7.7E-08 67.2 21.5 154 153-307 304-479 (822)
42 PF08579 RPM2: Mitochondrial r 97.8 0.00065 1.4E-08 54.7 11.8 81 210-290 27-116 (120)
43 TIGR00540 hemY_coli hemY prote 97.8 0.0046 9.9E-08 61.2 20.7 172 154-329 166-386 (409)
44 PF06239 ECSIT: Evolutionarily 97.8 0.00064 1.4E-08 61.0 12.9 49 258-306 118-167 (228)
45 PF10037 MRP-S27: Mitochondria 97.8 0.00025 5.4E-09 70.2 11.4 132 195-326 50-186 (429)
46 PF06239 ECSIT: Evolutionarily 97.7 0.0005 1.1E-08 61.6 11.5 107 205-330 44-155 (228)
47 PRK11447 cellulose synthase su 97.7 0.003 6.6E-08 70.6 20.5 155 151-310 583-744 (1157)
48 COG2956 Predicted N-acetylgluc 97.7 0.002 4.3E-08 60.8 15.2 156 150-306 116-277 (389)
49 TIGR00540 hemY_coli hemY prote 97.7 0.0047 1E-07 61.1 19.0 154 154-308 97-293 (409)
50 PRK12370 invasion protein regu 97.6 0.0048 1E-07 63.5 19.5 168 155-328 275-456 (553)
51 PRK10049 pgaA outer membrane p 97.6 0.0051 1.1E-07 65.9 20.3 147 154-305 28-177 (765)
52 TIGR03302 OM_YfiO outer membra 97.6 0.0058 1.3E-07 55.2 17.5 157 150-307 42-232 (235)
53 PF09295 ChAPs: ChAPs (Chs5p-A 97.6 0.003 6.6E-08 62.1 16.1 121 178-305 174-295 (395)
54 COG2956 Predicted N-acetylgluc 97.6 0.0056 1.2E-07 57.9 16.7 157 180-339 114-276 (389)
55 PRK11447 cellulose synthase su 97.6 0.0057 1.2E-07 68.4 19.9 120 180-307 580-700 (1157)
56 PF04733 Coatomer_E: Coatomer 97.5 0.00033 7.2E-09 66.2 8.3 147 152-307 113-265 (290)
57 KOG4318 Bicoid mRNA stability 97.5 0.00031 6.7E-09 73.5 8.1 89 195-295 12-100 (1088)
58 PF09295 ChAPs: ChAPs (Chs5p-A 97.4 0.0046 9.9E-08 60.9 14.6 112 154-270 182-295 (395)
59 KOG2003 TPR repeat-containing 97.4 0.02 4.3E-07 56.4 18.5 175 150-329 499-710 (840)
60 COG3071 HemY Uncharacterized e 97.4 0.02 4.3E-07 55.5 18.0 173 155-330 167-378 (400)
61 COG3063 PilF Tfp pilus assembl 97.3 0.044 9.6E-07 49.7 18.0 185 150-337 44-235 (250)
62 PF05843 Suf: Suppressor of fo 97.3 0.0082 1.8E-07 56.4 14.2 144 176-324 4-151 (280)
63 KOG1840 Kinesin light chain [C 97.2 0.018 4E-07 58.4 17.2 156 151-306 293-478 (508)
64 PRK11189 lipoprotein NlpI; Pro 97.2 0.071 1.5E-06 50.4 20.3 148 154-306 39-193 (296)
65 PRK11189 lipoprotein NlpI; Pro 97.2 0.1 2.2E-06 49.3 21.1 165 153-320 76-278 (296)
66 cd05804 StaR_like StaR_like; a 97.2 0.028 6.1E-07 53.7 17.7 151 152-307 54-215 (355)
67 COG3071 HemY Uncharacterized e 97.1 0.1 2.3E-06 50.6 20.3 161 153-314 96-299 (400)
68 cd00189 TPR Tetratricopeptide 97.1 0.015 3.3E-07 42.1 11.9 90 214-305 6-95 (100)
69 TIGR02552 LcrH_SycD type III s 97.1 0.023 5.1E-07 46.3 13.9 91 179-271 23-113 (135)
70 TIGR02552 LcrH_SycD type III s 97.1 0.021 4.6E-07 46.6 13.2 105 207-315 16-120 (135)
71 KOG4626 O-linked N-acetylgluco 97.0 0.036 7.8E-07 56.7 16.7 118 150-270 295-415 (966)
72 cd00189 TPR Tetratricopeptide 97.0 0.021 4.5E-07 41.4 11.7 94 177-272 4-97 (100)
73 PRK15359 type III secretion sy 97.0 0.047 1E-06 45.9 14.9 93 178-272 29-121 (144)
74 KOG1126 DNA-binding cell divis 97.0 0.025 5.5E-07 57.8 15.3 174 147-328 426-606 (638)
75 PF04733 Coatomer_E: Coatomer 97.0 0.0037 8E-08 59.1 8.8 130 182-322 111-244 (290)
76 PRK15359 type III secretion sy 97.0 0.031 6.8E-07 47.0 13.7 96 210-307 26-121 (144)
77 PRK10370 formate-dependent nit 97.0 0.055 1.2E-06 48.2 15.9 118 187-307 53-173 (198)
78 COG5010 TadD Flp pilus assembl 97.0 0.043 9.3E-07 50.4 15.1 179 115-306 49-230 (257)
79 PF09976 TPR_21: Tetratricopep 96.9 0.078 1.7E-06 44.4 15.9 116 185-303 23-143 (145)
80 KOG1155 Anaphase-promoting com 96.9 0.065 1.4E-06 53.1 17.1 156 148-306 336-494 (559)
81 KOG3081 Vesicle coat complex C 96.9 0.069 1.5E-06 49.4 16.2 121 180-310 115-239 (299)
82 KOG1070 rRNA processing protei 96.9 0.061 1.3E-06 59.4 17.9 169 154-328 1471-1649(1710)
83 PRK15179 Vi polysaccharide bio 96.9 0.057 1.2E-06 57.1 17.5 125 179-307 92-217 (694)
84 KOG1129 TPR repeat-containing 96.9 0.014 3E-07 55.4 11.4 155 150-307 232-387 (478)
85 KOG1126 DNA-binding cell divis 96.7 0.025 5.5E-07 57.8 13.1 126 175-308 423-553 (638)
86 COG4783 Putative Zn-dependent 96.7 0.14 3E-06 51.0 17.8 108 154-266 319-431 (484)
87 KOG2003 TPR repeat-containing 96.7 0.09 1.9E-06 52.0 16.1 111 179-293 598-709 (840)
88 TIGR02795 tol_pal_ybgF tol-pal 96.7 0.072 1.6E-06 41.9 13.3 93 180-272 9-105 (119)
89 KOG3081 Vesicle coat complex C 96.7 0.074 1.6E-06 49.2 14.6 148 151-307 118-271 (299)
90 PF09976 TPR_21: Tetratricopep 96.7 0.1 2.2E-06 43.7 14.5 113 154-268 24-143 (145)
91 PRK10370 formate-dependent nit 96.6 0.17 3.7E-06 45.0 15.9 126 154-282 52-182 (198)
92 TIGR02795 tol_pal_ybgF tol-pal 96.5 0.09 1.9E-06 41.3 12.7 100 209-308 3-106 (119)
93 KOG1840 Kinesin light chain [C 96.5 0.12 2.5E-06 52.6 15.9 157 151-307 209-396 (508)
94 PF12921 ATP13: Mitochondrial 96.5 0.04 8.6E-07 45.5 10.3 95 207-321 1-96 (126)
95 PF12895 Apc3: Anaphase-promot 96.4 0.009 2E-07 45.1 5.8 81 221-303 2-83 (84)
96 KOG1915 Cell cycle control pro 96.4 0.2 4.4E-06 49.9 16.3 146 154-305 86-234 (677)
97 PRK15179 Vi polysaccharide bio 96.4 0.21 4.5E-06 53.0 17.8 115 154-272 99-217 (694)
98 KOG1070 rRNA processing protei 96.4 0.22 4.8E-06 55.2 17.9 172 154-329 1510-1687(1710)
99 KOG1155 Anaphase-promoting com 96.3 0.41 8.8E-06 47.6 18.0 199 117-327 246-480 (559)
100 PRK10866 outer membrane biogen 96.3 0.51 1.1E-05 43.4 18.1 155 151-305 42-239 (243)
101 PF12921 ATP13: Mitochondrial 96.3 0.057 1.2E-06 44.6 10.6 82 177-258 6-103 (126)
102 TIGR03302 OM_YfiO outer membra 96.3 0.31 6.7E-06 43.8 16.4 149 178-328 38-218 (235)
103 KOG2002 TPR-containing nuclear 96.3 0.11 2.4E-06 55.5 14.7 156 154-310 625-801 (1018)
104 COG4783 Putative Zn-dependent 96.3 0.34 7.4E-06 48.3 17.4 152 176-331 309-462 (484)
105 COG3063 PilF Tfp pilus assembl 96.2 0.32 7E-06 44.2 15.5 128 179-308 41-169 (250)
106 KOG2002 TPR-containing nuclear 96.2 0.035 7.6E-07 59.1 10.7 132 187-320 626-758 (1018)
107 PF12569 NARP1: NMDA receptor- 96.2 0.48 1E-05 48.5 18.7 150 158-310 128-294 (517)
108 PF05843 Suf: Suppressor of fo 96.2 0.11 2.5E-06 48.7 13.3 128 156-288 16-150 (280)
109 PLN03088 SGT1, suppressor of 96.2 0.17 3.7E-06 49.2 14.8 104 181-288 10-113 (356)
110 KOG4626 O-linked N-acetylgluco 96.1 0.29 6.2E-06 50.4 16.1 148 154-307 333-485 (966)
111 KOG3941 Intermediate in Toll s 96.0 0.056 1.2E-06 50.5 9.9 101 205-305 64-186 (406)
112 PRK02603 photosystem I assembl 96.0 0.39 8.3E-06 41.3 14.9 81 179-260 41-123 (172)
113 PF14559 TPR_19: Tetratricopep 96.0 0.034 7.4E-07 39.8 6.9 50 221-271 4-53 (68)
114 PF12895 Apc3: Anaphase-promot 96.0 0.051 1.1E-06 40.9 8.1 81 186-268 2-83 (84)
115 cd05804 StaR_like StaR_like; a 96.0 0.49 1.1E-05 45.1 16.8 114 155-271 94-214 (355)
116 PLN03088 SGT1, suppressor of 96.0 0.19 4.1E-06 48.9 14.0 101 216-320 10-110 (356)
117 PF13170 DUF4003: Protein of u 96.0 0.24 5.3E-06 47.0 14.3 148 157-306 78-249 (297)
118 CHL00033 ycf3 photosystem I as 95.8 0.29 6.2E-06 41.9 13.2 90 178-268 40-138 (168)
119 PF03704 BTAD: Bacterial trans 95.8 0.08 1.7E-06 44.2 9.4 58 246-304 65-122 (146)
120 PF14559 TPR_19: Tetratricopep 95.8 0.042 9.1E-07 39.3 6.6 64 184-250 2-65 (68)
121 KOG2076 RNA polymerase III tra 95.8 1.1 2.3E-05 47.9 19.1 169 153-325 151-328 (895)
122 KOG3941 Intermediate in Toll s 95.8 0.14 3.1E-06 47.8 11.4 112 160-271 53-187 (406)
123 KOG1914 mRNA cleavage and poly 95.7 0.35 7.5E-06 48.9 14.3 137 189-329 347-488 (656)
124 KOG1129 TPR repeat-containing 95.6 0.21 4.4E-06 47.7 12.0 129 178-311 228-357 (478)
125 PF12688 TPR_5: Tetratrico pep 95.5 0.97 2.1E-05 37.0 14.3 102 182-289 10-117 (120)
126 KOG1173 Anaphase-promoting com 95.4 0.24 5.1E-06 50.2 12.3 167 154-324 325-533 (611)
127 PF03704 BTAD: Bacterial trans 95.4 0.19 4.2E-06 41.8 10.2 74 208-282 62-140 (146)
128 smart00299 CLH Clathrin heavy 95.3 1.1 2.5E-05 36.9 14.5 111 176-303 10-121 (140)
129 KOG0547 Translocase of outer m 95.3 0.51 1.1E-05 47.2 13.9 146 155-305 408-564 (606)
130 CHL00033 ycf3 photosystem I as 95.3 0.87 1.9E-05 38.9 14.1 98 207-305 34-140 (168)
131 KOG2053 Mitochondrial inherita 95.2 1.6 3.4E-05 46.7 18.1 132 154-289 22-155 (932)
132 KOG1914 mRNA cleavage and poly 95.2 1.4 3.1E-05 44.7 16.9 165 157-324 347-521 (656)
133 PRK02603 photosystem I assembl 95.2 0.88 1.9E-05 39.1 14.0 86 207-293 34-121 (172)
134 KOG1915 Cell cycle control pro 95.0 1.3 2.9E-05 44.3 15.7 181 154-340 120-309 (677)
135 PF13525 YfiO: Outer membrane 94.9 1.2 2.5E-05 39.6 14.3 158 152-328 16-193 (203)
136 PF13170 DUF4003: Protein of u 94.9 0.8 1.7E-05 43.5 13.8 138 178-317 62-221 (297)
137 KOG2076 RNA polymerase III tra 94.7 0.68 1.5E-05 49.3 13.8 146 181-328 385-541 (895)
138 PF04840 Vps16_C: Vps16, C-ter 94.7 0.61 1.3E-05 44.8 12.7 107 178-304 182-288 (319)
139 COG5010 TadD Flp pilus assembl 94.7 2.6 5.7E-05 38.9 16.1 126 182-310 75-200 (257)
140 PLN02789 farnesyltranstransfer 94.7 4 8.6E-05 39.2 18.3 94 188-284 87-182 (320)
141 PF13432 TPR_16: Tetratricopep 94.6 0.22 4.7E-06 35.3 7.2 53 217-270 6-58 (65)
142 PF12569 NARP1: NMDA receptor- 94.6 1.6 3.6E-05 44.6 16.0 126 179-307 200-334 (517)
143 KOG3785 Uncharacterized conser 94.5 0.69 1.5E-05 44.7 12.1 146 157-307 339-490 (557)
144 PRK10803 tol-pal system protei 94.4 1 2.2E-05 42.0 13.2 98 208-307 143-246 (263)
145 KOG0985 Vesicle coat protein c 94.4 1.2 2.6E-05 48.3 14.7 129 179-329 1054-1182(1666)
146 KOG3616 Selective LIM binding 94.3 0.34 7.4E-06 50.7 10.3 108 180-300 739-846 (1636)
147 PRK15363 pathogenicity island 94.1 1.1 2.4E-05 38.4 11.6 85 183-269 45-129 (157)
148 PF13432 TPR_16: Tetratricopep 94.0 0.33 7.2E-06 34.3 7.2 58 249-307 3-60 (65)
149 KOG0547 Translocase of outer m 94.0 2.2 4.8E-05 42.9 14.8 151 154-307 339-491 (606)
150 KOG2047 mRNA splicing factor [ 93.9 2.3 5E-05 44.1 15.0 150 179-336 144-304 (835)
151 PRK04841 transcriptional regul 93.8 3.4 7.4E-05 44.8 17.7 154 153-306 464-640 (903)
152 PF12688 TPR_5: Tetratrico pep 93.7 2.3 5E-05 34.7 12.5 103 216-324 9-117 (120)
153 KOG1128 Uncharacterized conser 93.6 0.87 1.9E-05 47.6 11.7 144 155-308 412-583 (777)
154 PRK15363 pathogenicity island 93.6 2.3 5E-05 36.4 12.5 88 218-307 45-132 (157)
155 KOG4340 Uncharacterized conser 93.5 0.8 1.7E-05 43.3 10.3 154 152-307 155-339 (459)
156 KOG3785 Uncharacterized conser 93.5 0.17 3.6E-06 48.8 5.9 80 225-305 340-420 (557)
157 PLN03098 LPA1 LOW PSII ACCUMUL 93.4 1.4 3E-05 44.0 12.5 57 178-236 80-140 (453)
158 KOG2376 Signal recognition par 93.3 1.1 2.4E-05 45.8 11.6 108 154-273 25-140 (652)
159 KOG3616 Selective LIM binding 93.2 0.39 8.5E-06 50.2 8.5 141 154-305 745-909 (1636)
160 COG5107 RNA14 Pre-mRNA 3'-end 93.0 0.74 1.6E-05 45.8 9.8 117 208-328 397-517 (660)
161 PLN02789 farnesyltranstransfer 93.0 8.8 0.00019 36.8 18.0 166 156-325 87-267 (320)
162 PF14938 SNAP: Soluble NSF att 93.0 1.6 3.4E-05 40.9 11.8 188 141-328 35-250 (282)
163 PF13424 TPR_12: Tetratricopep 93.0 0.39 8.4E-06 35.3 6.2 60 245-304 7-72 (78)
164 PF09205 DUF1955: Domain of un 92.9 4.4 9.6E-05 34.0 12.7 67 243-310 86-152 (161)
165 PRK14720 transcript cleavage f 92.9 2.7 5.9E-05 45.7 14.7 129 178-324 121-268 (906)
166 KOG3060 Uncharacterized conser 92.9 7.8 0.00017 36.0 19.0 149 154-308 65-221 (289)
167 PRK10153 DNA-binding transcrip 92.9 9.4 0.0002 39.2 18.1 115 189-307 358-482 (517)
168 KOG4340 Uncharacterized conser 92.8 2.7 5.8E-05 39.9 12.6 173 150-328 121-325 (459)
169 KOG0985 Vesicle coat protein c 92.7 4.3 9.4E-05 44.3 15.3 175 116-305 1004-1221(1666)
170 PF13414 TPR_11: TPR repeat; P 92.7 0.89 1.9E-05 32.3 7.7 62 243-305 3-65 (69)
171 PF13371 TPR_9: Tetratricopept 92.7 1 2.2E-05 32.3 8.1 54 217-271 4-57 (73)
172 KOG0495 HAT repeat protein [RN 92.4 5.3 0.00012 41.7 15.1 90 142-236 588-679 (913)
173 PF13424 TPR_12: Tetratricopep 92.3 0.47 1E-05 34.8 5.9 62 209-270 6-73 (78)
174 PF04840 Vps16_C: Vps16, C-ter 92.2 0.94 2E-05 43.5 9.2 113 154-289 190-302 (319)
175 COG5107 RNA14 Pre-mRNA 3'-end 92.1 4.1 8.9E-05 40.7 13.5 143 176-324 400-546 (660)
176 PF13414 TPR_11: TPR repeat; P 92.1 1 2.2E-05 32.0 7.4 64 207-271 2-66 (69)
177 PRK14720 transcript cleavage f 91.6 7.2 0.00016 42.5 15.9 124 178-307 36-178 (906)
178 PRK10803 tol-pal system protei 91.5 4.9 0.00011 37.4 13.1 88 185-272 155-246 (263)
179 KOG3060 Uncharacterized conser 91.5 12 0.00026 34.8 18.4 150 154-307 25-183 (289)
180 PRK10153 DNA-binding transcrip 91.4 4.6 0.0001 41.4 13.8 121 155-281 356-489 (517)
181 PF04053 Coatomer_WDAD: Coatom 90.6 1.3 2.9E-05 44.4 8.9 128 154-308 274-403 (443)
182 PF13371 TPR_9: Tetratricopept 90.4 1.5 3.2E-05 31.5 6.9 56 251-307 3-58 (73)
183 KOG2053 Mitochondrial inherita 90.3 5.5 0.00012 42.7 13.2 119 183-306 19-138 (932)
184 COG3629 DnrI DNA-binding trans 90.1 3.9 8.4E-05 38.5 10.8 78 209-287 154-236 (280)
185 PRK04841 transcriptional regul 90.0 21 0.00045 38.8 18.2 154 153-306 421-601 (903)
186 KOG2796 Uncharacterized conser 89.9 17 0.00037 34.1 14.5 127 178-307 182-315 (366)
187 KOG0495 HAT repeat protein [RN 89.7 29 0.00063 36.5 17.3 128 178-306 411-544 (913)
188 COG4105 ComL DNA uptake lipopr 89.6 17 0.00037 33.6 19.3 155 153-307 46-233 (254)
189 KOG1156 N-terminal acetyltrans 89.4 30 0.00065 36.1 18.3 151 156-309 303-470 (700)
190 KOG1125 TPR repeat-containing 89.3 4.6 0.0001 41.2 11.3 111 190-305 411-525 (579)
191 PRK10866 outer membrane biogen 89.2 17 0.00038 33.2 16.4 157 179-336 38-239 (243)
192 PF13762 MNE1: Mitochondrial s 89.1 6.3 0.00014 33.4 10.4 95 199-293 28-130 (145)
193 KOG0553 TPR repeat-containing 89.0 5.7 0.00012 37.5 11.0 96 183-283 91-187 (304)
194 smart00299 CLH Clathrin heavy 88.9 5.6 0.00012 32.6 10.1 120 211-338 10-135 (140)
195 COG3629 DnrI DNA-binding trans 88.8 7.9 0.00017 36.4 11.9 77 245-322 155-236 (280)
196 KOG3617 WD40 and TPR repeat-co 88.8 4.7 0.0001 43.1 11.2 133 154-303 741-883 (1416)
197 KOG2047 mRNA splicing factor [ 88.6 11 0.00023 39.5 13.4 130 156-291 153-294 (835)
198 KOG1173 Anaphase-promoting com 88.2 7.8 0.00017 39.7 12.0 160 157-320 298-498 (611)
199 KOG2376 Signal recognition par 88.2 33 0.00071 35.5 16.4 150 178-330 344-509 (652)
200 KOG1128 Uncharacterized conser 88.0 5.8 0.00013 41.7 11.3 154 150-307 433-616 (777)
201 KOG1156 N-terminal acetyltrans 87.7 16 0.00034 38.1 14.0 117 150-271 380-510 (700)
202 PF13929 mRNA_stabil: mRNA sta 87.7 13 0.00028 35.1 12.4 139 186-324 141-289 (292)
203 PF00637 Clathrin: Region in C 87.5 0.034 7.3E-07 46.3 -4.3 83 179-268 13-95 (143)
204 KOG2391 Vacuolar sorting prote 87.0 17 0.00037 34.9 12.9 55 238-293 294-348 (365)
205 KOG0553 TPR repeat-containing 86.9 11 0.00023 35.8 11.4 94 152-248 92-187 (304)
206 KOG2114 Vacuolar assembly/sort 86.8 3.7 7.9E-05 43.8 9.1 140 150-304 377-516 (933)
207 PF07079 DUF1347: Protein of u 86.8 20 0.00044 36.0 13.7 134 154-290 19-179 (549)
208 PF13512 TPR_18: Tetratricopep 86.5 6.1 0.00013 33.3 8.8 70 152-221 21-95 (142)
209 KOG4570 Uncharacterized conser 85.7 6.6 0.00014 37.6 9.4 99 203-305 59-162 (418)
210 COG4700 Uncharacterized protei 85.7 26 0.00056 31.3 16.6 122 178-303 94-218 (251)
211 PF04184 ST7: ST7 protein; In 85.6 15 0.00032 37.3 12.3 79 213-292 264-345 (539)
212 PF13525 YfiO: Outer membrane 85.3 21 0.00045 31.5 12.3 59 179-237 11-71 (203)
213 KOG4570 Uncharacterized conser 85.3 5.3 0.00011 38.2 8.5 82 154-236 77-163 (418)
214 PRK15331 chaperone protein Sic 85.3 9.9 0.00022 32.9 9.6 89 181-271 45-133 (165)
215 PF13512 TPR_18: Tetratricopep 85.0 12 0.00026 31.5 9.9 52 220-271 22-75 (142)
216 KOG0543 FKBP-type peptidyl-pro 84.6 27 0.00059 34.3 13.4 61 245-306 259-319 (397)
217 PF14938 SNAP: Soluble NSF att 84.4 3.5 7.6E-05 38.5 7.2 137 156-308 30-185 (282)
218 PF10602 RPN7: 26S proteasome 84.3 17 0.00037 31.6 11.0 97 209-305 37-140 (177)
219 PLN03098 LPA1 LOW PSII ACCUMUL 84.1 8.3 0.00018 38.6 9.8 100 205-310 72-177 (453)
220 cd00923 Cyt_c_Oxidase_Va Cytoc 83.6 7.4 0.00016 30.7 7.3 44 262-305 26-69 (103)
221 PF13281 DUF4071: Domain of un 83.5 48 0.001 32.6 16.1 153 154-308 154-335 (374)
222 PF13929 mRNA_stabil: mRNA sta 83.2 18 0.00039 34.2 11.1 135 154-288 141-288 (292)
223 PF02284 COX5A: Cytochrome c o 83.0 22 0.00048 28.3 10.0 44 262-305 29-72 (108)
224 KOG0548 Molecular co-chaperone 82.4 45 0.00097 34.1 14.2 124 182-308 307-456 (539)
225 PF00637 Clathrin: Region in C 81.8 0.28 6E-06 40.7 -1.2 124 213-343 12-140 (143)
226 COG1729 Uncharacterized protei 81.8 37 0.0008 31.6 12.6 97 208-307 142-244 (262)
227 PRK15331 chaperone protein Sic 80.7 37 0.0008 29.4 12.7 87 219-307 48-134 (165)
228 PF04053 Coatomer_WDAD: Coatom 80.4 37 0.0008 34.2 13.1 108 175-303 320-427 (443)
229 PF13762 MNE1: Mitochondrial s 80.2 28 0.00061 29.4 10.3 94 232-325 26-127 (145)
230 PF10602 RPN7: 26S proteasome 80.0 18 0.00039 31.5 9.5 93 178-270 41-140 (177)
231 COG3947 Response regulator con 79.4 59 0.0013 31.0 15.9 159 157-317 149-357 (361)
232 KOG2041 WD40 repeat protein [G 78.7 8.4 0.00018 40.6 7.8 22 5-26 523-544 (1189)
233 KOG2796 Uncharacterized conser 78.5 40 0.00086 31.7 11.4 127 157-286 193-327 (366)
234 COG3118 Thioredoxin domain-con 78.1 64 0.0014 30.6 12.9 124 180-307 141-265 (304)
235 KOG3617 WD40 and TPR repeat-co 77.8 23 0.00049 38.3 10.7 109 180-304 735-852 (1416)
236 PF13176 TPR_7: Tetratricopept 77.7 6 0.00013 24.6 4.3 23 246-268 2-24 (36)
237 PF07035 Mic1: Colon cancer-as 77.6 47 0.001 28.8 15.1 131 161-307 14-149 (167)
238 COG1729 Uncharacterized protei 77.0 49 0.0011 30.9 11.8 88 183-272 151-244 (262)
239 KOG1538 Uncharacterized conser 76.9 12 0.00025 39.2 8.2 42 157-198 616-657 (1081)
240 KOG1125 TPR repeat-containing 75.6 84 0.0018 32.4 13.8 141 156-299 409-563 (579)
241 PF13374 TPR_10: Tetratricopep 75.4 8.3 0.00018 23.9 4.7 27 244-270 3-29 (42)
242 KOG2280 Vacuolar assembly/sort 75.2 9.7 0.00021 40.2 7.3 106 179-303 690-795 (829)
243 cd00923 Cyt_c_Oxidase_Va Cytoc 75.0 21 0.00045 28.2 7.4 45 191-235 25-69 (103)
244 PF10300 DUF3808: Protein of u 74.0 1E+02 0.0023 31.1 16.4 178 120-306 173-375 (468)
245 COG4235 Cytochrome c biogenesi 73.8 82 0.0018 29.8 13.5 95 175-272 158-256 (287)
246 PF07079 DUF1347: Protein of u 73.2 1E+02 0.0022 31.3 13.3 137 185-325 18-179 (549)
247 PF09613 HrpB1_HrpK: Bacterial 72.9 61 0.0013 27.9 12.4 56 180-237 17-73 (160)
248 PF11848 DUF3368: Domain of un 72.7 13 0.00029 25.0 5.2 37 286-322 10-46 (48)
249 PF13176 TPR_7: Tetratricopept 72.2 9.7 0.00021 23.6 4.3 26 210-235 1-26 (36)
250 COG4235 Cytochrome c biogenesi 71.7 92 0.002 29.4 12.6 101 205-307 153-256 (287)
251 PF10300 DUF3808: Protein of u 71.3 1.2E+02 0.0026 30.7 15.4 131 178-310 193-338 (468)
252 PF02284 COX5A: Cytochrome c o 71.3 16 0.00034 29.1 6.0 38 198-235 35-72 (108)
253 PF13374 TPR_10: Tetratricopep 70.9 12 0.00026 23.2 4.6 29 208-236 2-30 (42)
254 PF13428 TPR_14: Tetratricopep 70.4 20 0.00043 23.1 5.6 26 246-271 4-29 (44)
255 COG3898 Uncharacterized membra 69.7 1.2E+02 0.0027 30.1 17.2 167 154-330 133-311 (531)
256 PF11207 DUF2989: Protein of u 69.6 48 0.001 29.7 9.5 78 219-298 118-198 (203)
257 KOG0624 dsRNA-activated protei 69.6 1.2E+02 0.0025 29.8 15.7 150 153-306 84-251 (504)
258 COG4649 Uncharacterized protei 69.4 81 0.0018 27.9 13.0 118 155-272 72-196 (221)
259 PF09205 DUF1955: Domain of un 69.0 57 0.0012 27.5 9.1 68 207-275 85-152 (161)
260 PF13428 TPR_14: Tetratricopep 68.7 12 0.00026 24.2 4.3 27 281-307 4-30 (44)
261 COG5108 RPO41 Mitochondrial DN 68.4 93 0.002 33.0 12.3 92 176-270 31-130 (1117)
262 KOG1127 TPR repeat-containing 68.3 1.1E+02 0.0023 34.1 13.1 145 156-305 473-657 (1238)
263 PF11207 DUF2989: Protein of u 68.3 52 0.0011 29.5 9.4 83 179-263 113-198 (203)
264 PF11663 Toxin_YhaV: Toxin wit 68.2 5.4 0.00012 33.3 3.0 30 154-183 108-138 (140)
265 PF07035 Mic1: Colon cancer-as 67.8 82 0.0018 27.3 14.0 103 192-306 13-117 (167)
266 KOG4162 Predicted calmodulin-b 66.9 64 0.0014 34.5 11.0 105 201-306 316-422 (799)
267 KOG1174 Anaphase-promoting com 66.4 1.5E+02 0.0032 29.8 14.4 152 152-306 311-499 (564)
268 PF13281 DUF4071: Domain of un 66.4 73 0.0016 31.3 10.9 128 212-341 145-299 (374)
269 COG3118 Thioredoxin domain-con 65.9 1.2E+02 0.0027 28.7 15.2 136 153-292 146-286 (304)
270 cd00280 TRFH Telomeric Repeat 65.5 35 0.00077 30.2 7.6 65 156-223 84-158 (200)
271 KOG1174 Anaphase-promoting com 65.1 1.6E+02 0.0034 29.6 15.2 49 150-200 241-293 (564)
272 KOG4555 TPR repeat-containing 64.0 89 0.0019 26.4 9.8 90 182-273 52-145 (175)
273 KOG0276 Vesicle coat complex C 63.5 36 0.00078 35.5 8.3 82 207-303 665-746 (794)
274 KOG1538 Uncharacterized conser 62.4 30 0.00065 36.4 7.5 119 180-309 710-848 (1081)
275 KOG2610 Uncharacterized conser 62.0 1.3E+02 0.0027 29.5 11.1 150 154-305 116-274 (491)
276 KOG2610 Uncharacterized conser 61.8 1.6E+02 0.0036 28.7 12.6 118 185-305 115-236 (491)
277 PF11848 DUF3368: Domain of un 61.7 31 0.00067 23.2 5.3 37 180-216 9-45 (48)
278 KOG1550 Extracellular protein 61.6 2E+02 0.0044 29.7 17.4 163 154-320 262-439 (552)
279 KOG1127 TPR repeat-containing 61.2 77 0.0017 35.1 10.5 116 189-306 474-624 (1238)
280 PF00515 TPR_1: Tetratricopept 61.2 27 0.00059 20.7 4.7 28 244-271 2-29 (34)
281 PF11838 ERAP1_C: ERAP1-like C 60.4 1.5E+02 0.0032 27.7 12.8 108 212-323 133-246 (324)
282 COG4649 Uncharacterized protei 60.1 1.2E+02 0.0027 26.8 14.1 130 183-312 68-201 (221)
283 PF04184 ST7: ST7 protein; In 59.9 1E+02 0.0022 31.5 10.7 72 249-320 265-338 (539)
284 TIGR03504 FimV_Cterm FimV C-te 58.7 28 0.00061 23.1 4.6 24 285-308 6-29 (44)
285 KOG4162 Predicted calmodulin-b 58.5 2.6E+02 0.0057 30.0 15.5 125 178-306 655-782 (799)
286 KOG0550 Molecular chaperone (D 58.4 2E+02 0.0044 28.8 12.1 148 154-307 182-350 (486)
287 KOG2422 Uncharacterized conser 57.9 1.5E+02 0.0032 31.0 11.4 105 154-258 304-430 (665)
288 smart00638 LPD_N Lipoprotein N 57.5 2.3E+02 0.0051 29.1 14.6 63 207-274 309-371 (574)
289 TIGR02508 type_III_yscG type I 56.7 1E+02 0.0022 24.7 8.4 51 217-273 48-98 (115)
290 PF04910 Tcf25: Transcriptiona 56.6 1.8E+02 0.004 28.3 11.8 79 179-258 109-194 (360)
291 COG5108 RPO41 Mitochondrial DN 56.1 64 0.0014 34.2 8.6 90 213-305 33-130 (1117)
292 KOG4077 Cytochrome c oxidase, 55.8 1.2E+02 0.0025 25.4 8.5 60 261-321 67-126 (149)
293 COG5159 RPN6 26S proteasome re 54.9 1.2E+02 0.0025 29.0 9.5 120 150-269 12-151 (421)
294 KOG0543 FKBP-type peptidyl-pro 54.3 1.9E+02 0.0041 28.7 11.2 124 181-307 216-355 (397)
295 PF07163 Pex26: Pex26 protein; 54.0 1.7E+02 0.0036 27.8 10.4 85 180-266 90-181 (309)
296 KOG0276 Vesicle coat complex C 54.0 1.9E+02 0.0042 30.4 11.6 105 177-308 618-722 (794)
297 COG1747 Uncharacterized N-term 53.7 2.6E+02 0.0056 29.0 12.2 35 273-307 200-234 (711)
298 KOG0548 Molecular co-chaperone 53.7 2.7E+02 0.0058 28.7 12.5 135 151-290 308-471 (539)
299 KOG0991 Replication factor C, 53.2 1.9E+02 0.0042 26.9 12.5 36 276-312 237-272 (333)
300 PF11846 DUF3366: Domain of un 52.7 65 0.0014 28.0 7.4 32 204-235 140-171 (193)
301 KOG2114 Vacuolar assembly/sort 52.7 73 0.0016 34.5 8.6 114 178-300 339-485 (933)
302 PF11838 ERAP1_C: ERAP1-like C 52.2 2E+02 0.0043 26.7 12.6 133 188-325 145-287 (324)
303 KOG0687 26S proteasome regulat 52.1 2.3E+02 0.0051 27.5 11.8 150 155-306 36-209 (393)
304 PF13934 ELYS: Nuclear pore co 52.1 1.1E+02 0.0024 27.6 9.0 109 170-289 73-183 (226)
305 PHA02875 ankyrin repeat protei 52.0 64 0.0014 31.4 8.0 21 287-311 174-194 (413)
306 KOG4555 TPR repeat-containing 51.8 1.5E+02 0.0032 25.1 10.9 92 217-310 52-147 (175)
307 PRK10564 maltose regulon perip 51.0 44 0.00094 31.8 6.2 35 247-281 261-295 (303)
308 PF11663 Toxin_YhaV: Toxin wit 50.8 16 0.00034 30.6 2.9 28 223-252 110-137 (140)
309 KOG1550 Extracellular protein 50.2 3.1E+02 0.0067 28.3 14.5 149 156-309 227-395 (552)
310 KOG1114 Tripeptidyl peptidase 49.8 4.1E+02 0.0089 29.6 14.3 96 224-327 1163-1281(1304)
311 cd08819 CARD_MDA5_2 Caspase ac 49.1 1E+02 0.0023 23.7 6.9 38 220-262 48-85 (88)
312 COG0735 Fur Fe2+/Zn2+ uptake r 48.9 78 0.0017 26.5 6.9 61 162-222 7-69 (145)
313 PF09435 DUF2015: Fungal prote 48.9 91 0.002 25.7 6.9 61 120-207 58-121 (128)
314 PRK11906 transcriptional regul 48.6 3.1E+02 0.0066 27.8 13.5 143 156-302 273-431 (458)
315 PF08631 SPO22: Meiosis protei 48.3 2.3E+02 0.0049 26.3 18.4 147 178-327 89-253 (278)
316 COG3947 Response regulator con 48.3 1.2E+02 0.0026 29.0 8.5 73 209-282 280-357 (361)
317 KOG4648 Uncharacterized conser 48.2 58 0.0013 31.8 6.6 81 181-271 105-186 (536)
318 TIGR03504 FimV_Cterm FimV C-te 47.9 35 0.00075 22.6 3.7 22 215-236 6-27 (44)
319 PF11846 DUF3366: Domain of un 47.8 1E+02 0.0022 26.8 7.8 53 255-307 120-173 (193)
320 KOG2280 Vacuolar assembly/sort 47.8 1.2E+02 0.0026 32.5 9.2 125 171-305 636-771 (829)
321 PF09613 HrpB1_HrpK: Bacterial 47.4 1.8E+02 0.004 25.0 13.8 101 207-313 6-112 (160)
322 KOG1920 IkappaB kinase complex 47.4 1.9E+02 0.0041 32.7 11.0 140 154-305 864-1026(1265)
323 PF00515 TPR_1: Tetratricopept 46.5 60 0.0013 19.1 4.6 28 209-236 2-29 (34)
324 KOG4567 GTPase-activating prot 46.2 1.1E+02 0.0023 29.4 7.9 59 227-290 262-320 (370)
325 PF09454 Vps23_core: Vps23 cor 46.0 38 0.00083 24.4 4.0 49 241-290 6-54 (65)
326 COG0457 NrfG FOG: TPR repeat [ 45.6 1.6E+02 0.0035 23.7 18.4 90 217-306 139-230 (291)
327 PF12926 MOZART2: Mitotic-spin 45.6 1E+02 0.0022 23.7 6.3 43 194-236 29-71 (88)
328 PF07719 TPR_2: Tetratricopept 45.4 61 0.0013 18.8 4.7 27 245-271 3-29 (34)
329 PF10475 DUF2450: Protein of u 45.3 2.6E+02 0.0057 26.2 12.4 109 179-298 104-217 (291)
330 KOG4648 Uncharacterized conser 44.9 84 0.0018 30.7 7.1 77 147-231 103-181 (536)
331 PF07721 TPR_4: Tetratricopept 44.9 40 0.00086 19.2 3.2 15 251-265 9-23 (26)
332 COG4455 ImpE Protein of avirul 44.1 1.5E+02 0.0033 27.2 8.2 77 210-287 3-81 (273)
333 cd08819 CARD_MDA5_2 Caspase ac 43.6 1.4E+02 0.0031 23.0 6.9 36 187-227 50-85 (88)
334 TIGR02561 HrpB1_HrpK type III 43.1 2.1E+02 0.0046 24.4 11.6 50 186-237 23-73 (153)
335 PF10366 Vps39_1: Vacuolar sor 43.0 1.7E+02 0.0036 23.2 7.8 27 245-271 41-67 (108)
336 PF11768 DUF3312: Protein of u 42.8 2.9E+02 0.0062 28.6 10.9 124 176-308 411-537 (545)
337 PF13181 TPR_8: Tetratricopept 41.8 72 0.0016 18.6 4.4 26 245-270 3-28 (34)
338 KOG1586 Protein required for f 41.0 2.2E+02 0.0047 26.5 8.7 28 254-281 165-192 (288)
339 PF14689 SPOB_a: Sensor_kinase 40.9 75 0.0016 22.5 4.8 23 248-270 28-50 (62)
340 PF11817 Foie-gras_1: Foie gra 40.5 1.4E+02 0.0031 27.2 7.9 56 214-269 184-244 (247)
341 PRK15180 Vi polysaccharide bio 40.5 2.6E+02 0.0057 28.7 10.0 118 185-306 301-419 (831)
342 PF10345 Cohesin_load: Cohesin 40.2 4.5E+02 0.0098 27.4 16.4 151 154-305 73-252 (608)
343 KOG1114 Tripeptidyl peptidase 40.1 2.2E+02 0.0048 31.5 9.9 102 203-305 1161-1293(1304)
344 PRK10564 maltose regulon perip 39.8 59 0.0013 30.9 5.2 45 274-318 252-297 (303)
345 PF14689 SPOB_a: Sensor_kinase 39.5 48 0.001 23.5 3.6 43 157-201 6-51 (62)
346 PRK08691 DNA polymerase III su 39.2 5.2E+02 0.011 27.8 12.5 34 201-236 193-226 (709)
347 cd07229 Pat_TGL3_like Triacylg 38.6 88 0.0019 31.0 6.4 129 162-295 100-254 (391)
348 cd08326 CARD_CASP9 Caspase act 37.9 1.8E+02 0.0039 22.0 8.2 58 161-223 19-76 (84)
349 PF09797 NatB_MDM20: N-acetylt 37.9 1.2E+02 0.0026 29.3 7.4 70 211-282 183-256 (365)
350 COG0457 NrfG FOG: TPR repeat [ 37.7 2.1E+02 0.0046 22.9 19.5 153 154-307 108-265 (291)
351 PRK09857 putative transposase; 37.7 2.8E+02 0.0062 26.1 9.6 18 295-312 257-274 (292)
352 PF06552 TOM20_plant: Plant sp 37.5 1.6E+02 0.0035 26.0 7.2 115 189-310 7-139 (186)
353 PRK15180 Vi polysaccharide bio 37.5 1.9E+02 0.004 29.7 8.4 121 148-270 296-418 (831)
354 KOG2908 26S proteasome regulat 37.2 4.1E+02 0.0088 26.0 10.4 78 212-289 79-167 (380)
355 PF13174 TPR_6: Tetratricopept 37.0 73 0.0016 18.3 3.7 22 285-306 7-28 (33)
356 PRK09857 putative transposase; 36.9 2.6E+02 0.0057 26.4 9.2 66 211-277 209-274 (292)
357 PF10155 DUF2363: Uncharacteri 36.8 2.4E+02 0.0052 23.2 11.8 47 157-206 5-51 (126)
358 KOG2908 26S proteasome regulat 36.8 3.3E+02 0.0071 26.6 9.6 77 179-255 81-168 (380)
359 COG4003 Uncharacterized protei 36.6 79 0.0017 24.1 4.4 26 178-203 36-61 (98)
360 cd08332 CARD_CASP2 Caspase act 36.3 2E+02 0.0042 22.0 8.5 54 162-220 24-77 (90)
361 PF07163 Pex26: Pex26 protein; 36.2 3.9E+02 0.0084 25.4 10.6 89 211-301 86-181 (309)
362 PRK11639 zinc uptake transcrip 36.1 1.6E+02 0.0035 25.3 7.1 58 167-224 17-76 (169)
363 COG5210 GTPase-activating prot 36.0 4.1E+02 0.0089 27.0 11.1 58 226-283 360-417 (496)
364 KOG4077 Cytochrome c oxidase, 35.7 2.3E+02 0.005 23.7 7.3 45 192-236 68-112 (149)
365 PRK07003 DNA polymerase III su 35.4 5.9E+02 0.013 27.8 12.2 46 189-236 180-226 (830)
366 KOG0159 Cytochrome P450 CYP11/ 35.1 5.2E+02 0.011 26.6 11.6 83 205-292 298-386 (519)
367 PRK14958 DNA polymerase III su 35.0 5.1E+02 0.011 26.5 12.8 20 292-311 259-278 (509)
368 PRK13342 recombination factor 35.0 4.5E+02 0.0098 25.9 15.8 44 156-200 152-201 (413)
369 PF14669 Asp_Glu_race_2: Putat 34.4 3.4E+02 0.0074 24.4 8.7 55 248-302 137-205 (233)
370 PRK13342 recombination factor 34.2 4.7E+02 0.01 25.8 15.2 122 189-312 153-304 (413)
371 TIGR02508 type_III_yscG type I 34.1 2.4E+02 0.0052 22.6 6.9 77 156-238 20-98 (115)
372 PF13431 TPR_17: Tetratricopep 34.0 47 0.001 20.3 2.5 22 242-263 12-33 (34)
373 PF09868 DUF2095: Uncharacteri 33.7 1.6E+02 0.0034 24.0 5.9 24 215-238 68-91 (128)
374 smart00544 MA3 Domain in DAP-5 33.6 2.3E+02 0.0049 22.0 8.0 23 213-235 7-29 (113)
375 cd00280 TRFH Telomeric Repeat 33.6 3E+02 0.0065 24.5 8.2 65 190-257 86-157 (200)
376 PHA02798 ankyrin-like protein; 33.5 1.9E+02 0.0042 29.0 8.3 149 162-312 52-213 (489)
377 COG0735 Fur Fe2+/Zn2+ uptake r 33.5 1.2E+02 0.0026 25.4 5.7 32 249-280 26-57 (145)
378 PF10579 Rapsyn_N: Rapsyn N-te 32.9 1.4E+02 0.0031 22.5 5.3 20 245-264 45-64 (80)
379 COG4455 ImpE Protein of avirul 32.6 3.3E+02 0.007 25.1 8.4 75 177-252 5-81 (273)
380 PF09090 MIF4G_like_2: MIF4G l 32.4 4E+02 0.0086 24.4 11.4 129 207-335 10-153 (253)
381 TIGR02561 HrpB1_HrpK type III 32.0 3.2E+02 0.007 23.3 12.9 79 207-290 6-88 (153)
382 PF11817 Foie-gras_1: Foie gra 31.9 3.9E+02 0.0085 24.2 10.1 58 248-305 183-245 (247)
383 PF09454 Vps23_core: Vps23 cor 31.8 84 0.0018 22.7 3.9 51 204-255 4-54 (65)
384 PF10475 DUF2450: Protein of u 31.7 2E+02 0.0044 26.9 7.6 105 212-328 102-212 (291)
385 PLN03025 replication factor C 31.4 4.5E+02 0.0098 24.8 11.9 31 201-233 173-203 (319)
386 KOG4567 GTPase-activating prot 31.4 2.6E+02 0.0057 26.9 7.9 59 192-255 262-320 (370)
387 TIGR01228 hutU urocanate hydra 31.1 3.2E+02 0.007 28.0 8.9 17 292-308 407-423 (545)
388 KOG2058 Ypt/Rab GTPase activat 31.1 4.1E+02 0.0088 26.8 9.7 68 179-253 292-359 (436)
389 COG5210 GTPase-activating prot 30.6 5.3E+02 0.011 26.2 10.9 57 192-248 361-417 (496)
390 smart00638 LPD_N Lipoprotein N 30.4 6.2E+02 0.013 26.0 14.7 50 184-237 320-369 (574)
391 PRK14958 DNA polymerase III su 30.2 6.2E+02 0.013 26.0 12.6 75 200-277 192-279 (509)
392 PRK14951 DNA polymerase III su 29.9 6.9E+02 0.015 26.4 12.6 33 201-235 198-230 (618)
393 COG4003 Uncharacterized protei 29.8 88 0.0019 23.9 3.7 27 283-309 36-62 (98)
394 COG2178 Predicted RNA-binding 29.3 4.2E+02 0.0091 23.7 9.9 59 179-237 35-98 (204)
395 PF02847 MA3: MA3 domain; Int 29.2 1.1E+02 0.0024 23.8 4.6 22 213-234 7-28 (113)
396 smart00028 TPR Tetratricopepti 29.1 96 0.0021 16.3 3.6 26 245-270 3-28 (34)
397 PF10579 Rapsyn_N: Rapsyn N-te 28.2 1.2E+02 0.0026 22.9 4.2 20 210-229 45-64 (80)
398 COG4105 ComL DNA uptake lipopr 28.0 4.9E+02 0.011 24.2 17.9 156 182-339 43-234 (254)
399 COG2405 Predicted nucleic acid 27.3 1.1E+02 0.0024 25.8 4.2 41 283-323 114-154 (157)
400 PF09868 DUF2095: Uncharacteri 27.1 2.5E+02 0.0053 22.9 6.0 26 248-273 66-91 (128)
401 PRK11639 zinc uptake transcrip 27.1 3.2E+02 0.007 23.4 7.5 64 197-261 15-78 (169)
402 PRK13713 conjugal transfer pro 26.9 3.1E+02 0.0068 22.3 6.6 58 224-286 6-64 (118)
403 PRK07764 DNA polymerase III su 26.9 8.2E+02 0.018 26.8 12.0 83 190-275 182-279 (824)
404 PF10366 Vps39_1: Vacuolar sor 26.8 2.6E+02 0.0057 22.1 6.4 27 280-306 41-67 (108)
405 smart00386 HAT HAT (Half-A-TPR 26.7 1.3E+02 0.0027 16.9 4.0 27 223-250 2-28 (33)
406 PF02847 MA3: MA3 domain; Int 26.3 2.5E+02 0.0055 21.7 6.3 59 177-237 6-66 (113)
407 KOG0890 Protein kinase of the 26.0 5.1E+02 0.011 31.7 10.5 109 179-297 1389-1502(2382)
408 PRK10304 ferritin; Provisional 26.0 2.3E+02 0.005 24.3 6.3 106 188-302 50-155 (165)
409 KOG2536 MAM33, mitochondrial m 25.9 1.7E+02 0.0037 27.2 5.6 42 159-200 216-258 (263)
410 KOG2041 WD40 repeat protein [G 25.7 3.4E+02 0.0073 29.3 8.2 20 154-173 747-766 (1189)
411 PF08424 NRDE-2: NRDE-2, neces 25.4 5.9E+02 0.013 24.1 15.3 119 189-309 47-185 (321)
412 PRK09462 fur ferric uptake reg 25.3 3.2E+02 0.0069 22.6 7.0 59 166-224 7-68 (148)
413 PRK14956 DNA polymerase III su 25.0 7.5E+02 0.016 25.3 13.0 43 191-235 184-227 (484)
414 KOG1941 Acetylcholine receptor 24.8 4.5E+02 0.0098 26.1 8.4 127 178-304 127-272 (518)
415 PF15469 Sec5: Exocyst complex 24.6 4.5E+02 0.0097 22.5 8.2 25 212-236 90-114 (182)
416 TIGR03581 EF_0839 conserved hy 24.6 1.6E+02 0.0035 26.7 5.1 44 226-269 190-234 (236)
417 KOG0292 Vesicle coat complex C 24.5 1.2E+02 0.0026 33.3 4.8 76 178-271 625-700 (1202)
418 PHA02875 ankyrin repeat protei 24.0 1.9E+02 0.0042 28.0 6.2 138 154-312 12-162 (413)
419 PRK08691 DNA polymerase III su 23.9 9.3E+02 0.02 25.9 12.2 46 157-202 180-227 (709)
420 PF09477 Type_III_YscG: Bacter 23.8 3.9E+02 0.0086 21.6 7.3 79 188-273 21-99 (116)
421 PF14669 Asp_Glu_race_2: Putat 23.7 5.4E+02 0.012 23.2 11.5 56 212-267 136-205 (233)
422 COG5159 RPN6 26S proteasome re 23.6 6.6E+02 0.014 24.1 11.2 134 179-312 9-163 (421)
423 PF07575 Nucleopor_Nup85: Nup8 23.6 1.8E+02 0.0039 30.1 6.1 113 207-321 404-538 (566)
424 cd08329 CARD_BIRC2_BIRC3 Caspa 23.3 3.5E+02 0.0076 20.8 8.1 53 161-218 26-78 (94)
425 PF09477 Type_III_YscG: Bacter 23.1 4.1E+02 0.0088 21.5 8.5 75 157-237 22-98 (116)
426 PHA03100 ankyrin repeat protei 22.7 5.1E+02 0.011 25.5 9.1 64 163-230 123-195 (480)
427 PRK11906 transcriptional regul 22.7 8.1E+02 0.018 24.8 16.9 140 188-330 273-425 (458)
428 KOG1585 Protein required for f 22.6 6.5E+02 0.014 23.6 11.4 50 281-330 193-245 (308)
429 PRK14951 DNA polymerase III su 21.6 9.7E+02 0.021 25.3 11.6 84 156-240 184-282 (618)
430 COG2178 Predicted RNA-binding 21.6 5.9E+02 0.013 22.8 9.7 108 190-306 20-149 (204)
431 KOG2659 LisH motif-containing 21.4 6.3E+02 0.014 23.1 10.1 92 175-268 28-128 (228)
432 COG4700 Uncharacterized protei 21.3 6.1E+02 0.013 22.9 17.8 126 178-307 61-189 (251)
433 KOG0687 26S proteasome regulat 21.2 7.8E+02 0.017 24.0 11.3 92 178-271 109-209 (393)
434 cd08785 CARD_CARD9-like Caspas 21.1 3.8E+02 0.0082 20.4 5.9 44 160-204 18-64 (86)
435 COG1747 Uncharacterized N-term 21.0 9.6E+02 0.021 25.0 12.7 96 205-305 63-158 (711)
436 COG2042 Uncharacterized conser 20.8 5.4E+02 0.012 22.4 7.3 62 207-271 114-176 (179)
437 cd07153 Fur_like Ferric uptake 20.6 2.2E+02 0.0047 22.2 4.8 47 214-260 6-52 (116)
438 KOG2214 Predicted esterase of 20.6 4.9E+02 0.011 26.8 8.0 92 163-254 192-327 (543)
439 PRK14136 recX recombination re 20.5 7.6E+02 0.016 23.6 13.2 63 179-244 182-245 (309)
440 KOG1920 IkappaB kinase complex 20.3 2.8E+02 0.006 31.4 6.8 115 178-304 856-991 (1265)
441 KOG0159 Cytochrome P450 CYP11/ 20.3 9.6E+02 0.021 24.8 10.8 63 240-307 298-360 (519)
442 PF01347 Vitellogenin_N: Lipop 20.3 7.7E+02 0.017 25.5 10.1 60 210-272 348-407 (618)
443 PF11768 DUF3312: Protein of u 20.3 6.8E+02 0.015 26.0 9.1 86 150-237 417-507 (545)
444 TIGR03581 EF_0839 conserved hy 20.0 3.1E+02 0.0067 25.0 5.9 80 156-235 136-235 (236)
No 1
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.98 E-value=7.9e-32 Score=282.15 Aligned_cols=223 Identities=18% Similarity=0.212 Sum_probs=165.9
Q ss_pred ccCchhHHhhhhhcCCCCCCCCCcccccchhcccccCC------------------------CCCCCCCHHHHHHHHHHH
Q 047934 112 VQSDENFLDQFKLAIDKKPGNPQQNESLGQRQEQKPNR------------------------NEPISEPPQEADEIFKKM 167 (344)
Q Consensus 112 ~~~~h~~~~k~gl~~~~~v~~~l~~~~~~~~~y~~~~~------------------------~~~~sg~~~~A~~lf~~M 167 (344)
+.++|+.+++.|+..+.++.++|+ ..|.++.+ .|...|++++|.++|++|
T Consensus 243 ~~~l~~~~~~~g~~~d~~~~n~Li------~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M 316 (697)
T PLN03081 243 GQQLHCCVLKTGVVGDTFVSCALI------DMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEM 316 (697)
T ss_pred HHHHHHHHHHhCCCccceeHHHHH------HHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 467899999999999999999988 55555432 122244555555555555
Q ss_pred HHCCCCCCHH---HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 047934 168 KETGLIPNAV---AMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAF 244 (344)
Q Consensus 168 ~~~gi~p~~~---tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~ 244 (344)
.+.|+.|+.. ++|.+|++.|++++|.+++.+|.+.|+.||..+||+||++|+++|++++|+++|++|. +||++
T Consensus 317 ~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~ 392 (697)
T PLN03081 317 RDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLI 392 (697)
T ss_pred HHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCee
Confidence 5555544432 3455555555555555555555555555555555566666666666666666666664 35788
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-CCCcccHHHHHHHHhcc
Q 047934 245 SYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRERGVEKAQSVIATLKE-KGFLVNDKAVREFLDKK 323 (344)
Q Consensus 245 tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~~e~a~~l~~~M~~-~Gi~p~~~~~~~Ll~~y 323 (344)
|||+||.+|++.|+.++|+++|++|.+.|+.||..||+++|.+|++.|.+++|.++|+.|.+ .|+.|+..+|++++++|
T Consensus 393 t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l 472 (697)
T PLN03081 393 SWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELL 472 (697)
T ss_pred eHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999986 69999999999999999
Q ss_pred CCCChHH-----------------HHHHhcCccCCCCC
Q 047934 324 APFSSSV-----------------WEAIFGKKTLQKPF 344 (344)
Q Consensus 324 ak~g~~~-----------------W~all~~~~~~~~~ 344 (344)
++.|... |+++++.|+.++.+
T Consensus 473 ~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~ 510 (697)
T PLN03081 473 GREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNL 510 (697)
T ss_pred HhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCc
Confidence 9988542 99999999888753
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.97 E-value=5.2e-30 Score=275.57 Aligned_cols=204 Identities=18% Similarity=0.261 Sum_probs=129.3
Q ss_pred ccCchhHHhhhhhcCCCCCCCCCcccccchhcccccCCCCCCCCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHcCC
Q 047934 112 VQSDENFLDQFKLAIDKKPGNPQQNESLGQRQEQKPNRNEPISEPPQEADEIFKKMKETGLIPNA---VAMLDGLCKDGL 188 (344)
Q Consensus 112 ~~~~h~~~~k~gl~~~~~v~~~l~~~~~~~~~y~~~~~~~~~sg~~~~A~~lf~~M~~~gi~p~~---~tli~~~~k~g~ 188 (344)
...+|..+.+.|+..+.++-+.++ ..|.+.|++++|.++|++|.+.|+.|+. ++||.+|++.|+
T Consensus 456 A~~lf~~M~~~Gl~pD~~tynsLI-------------~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~ 522 (1060)
T PLN03218 456 ALRVLRLVQEAGLKADCKLYTTLI-------------STCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQ 522 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHH-------------HHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcC
Confidence 345667777777777776666665 2333455566666666666666666653 356666666666
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 047934 189 IQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQS--NGIAPNAFSYNLLIQGLYKCNKLEEAVEYC 266 (344)
Q Consensus 189 ~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~--~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf 266 (344)
+++|+++|++|.+.|+.||.+|||+||.+|++.|++++|.++|++|.+ .|+.||.+||++||.+|+++|++++|.++|
T Consensus 523 ~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf 602 (1060)
T PLN03218 523 VAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVY 602 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 666666666666666666666666666666666666666666666654 456666666666666666666666666666
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCcccHHHHHHHHhccCCCCh
Q 047934 267 IEMLEAGHSPNVTTFVGLVDGLCRERGVEKAQSVIATLKEKGFLVNDKAVREFLDKKAPFSS 328 (344)
Q Consensus 267 ~~M~~~gv~pd~~ty~~lL~a~~~~G~~e~a~~l~~~M~~~Gi~p~~~~~~~Ll~~yak~g~ 328 (344)
++|.+.|+.|+..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|+.||++|++.|.
T Consensus 603 ~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~ 664 (1060)
T PLN03218 603 QMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGD 664 (1060)
T ss_pred HHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC
Confidence 66666666666666666666666666666666666666666666666666666666555554
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.97 E-value=1.5e-30 Score=272.52 Aligned_cols=216 Identities=22% Similarity=0.254 Sum_probs=191.0
Q ss_pred CCCccCchhHHhhhhhcCCCCCCCCCcccccchhcccccCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHcCC
Q 047934 109 PDGVQSDENFLDQFKLAIDKKPGNPQQNESLGQRQEQKPNRNEPISEPPQEADEIFKKMKETGLIPNAVAMLDGLCKDGL 188 (344)
Q Consensus 109 ~~~~~~~h~~~~k~gl~~~~~v~~~l~~~~~~~~~y~~~~~~~~~sg~~~~A~~lf~~M~~~gi~p~~~tli~~~~k~g~ 188 (344)
.....++|..+++.|+..+.++.+.++ . .|.++|++++|.++|++|.+.++. +|++||.+|++.|+
T Consensus 139 ~~~a~~l~~~m~~~g~~~~~~~~n~Li------~-------~y~k~g~~~~A~~lf~~m~~~~~~-t~n~li~~~~~~g~ 204 (697)
T PLN03081 139 IRCVKAVYWHVESSGFEPDQYMMNRVL------L-------MHVKCGMLIDARRLFDEMPERNLA-SWGTIIGGLVDAGN 204 (697)
T ss_pred HHHHHHHHHHHHHhCCCcchHHHHHHH------H-------HHhcCCCHHHHHHHHhcCCCCCee-eHHHHHHHHHHCcC
Confidence 344678999999999999988888777 3 344567799999999999887766 69999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCC-----------------------------------HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 047934 189 IQEAMKLFGLMREKGTIPE-----------------------------------VVIYTAVVDGFCKAQKFDDAKRIFRK 233 (344)
Q Consensus 189 ~~~A~~lf~~M~~~g~~pd-----------------------------------~~tyn~LI~ay~k~g~~e~A~~vf~~ 233 (344)
+++|+++|++|.+.|+.|| ..+||+||++|+++|++++|.++|+.
T Consensus 205 ~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~ 284 (697)
T PLN03081 205 YREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDG 284 (697)
T ss_pred HHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHh
Confidence 9999999999977666555 45568889999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCcccH
Q 047934 234 MQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRERGVEKAQSVIATLKEKGFLVND 313 (344)
Q Consensus 234 M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~~e~a~~l~~~M~~~Gi~p~~ 313 (344)
|.. +|+++||+||.+|++.|++++|+++|++|.+.|+.||..||+++|.+|++.|.+++|.+++.+|.+.|+.||.
T Consensus 285 m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~ 360 (697)
T PLN03081 285 MPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDI 360 (697)
T ss_pred CCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCe
Confidence 974 5999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCCChHH----------------HHHHhcCccCCC
Q 047934 314 KAVREFLDKKAPFSSSV----------------WEAIFGKKTLQK 342 (344)
Q Consensus 314 ~~~~~Ll~~yak~g~~~----------------W~all~~~~~~~ 342 (344)
.++++||++|+++|... |++|+.++..++
T Consensus 361 ~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G 405 (697)
T PLN03081 361 VANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHG 405 (697)
T ss_pred eehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcC
Confidence 99999999999999743 888887766554
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.97 E-value=2.1e-29 Score=270.89 Aligned_cols=186 Identities=14% Similarity=0.210 Sum_probs=170.3
Q ss_pred ccccCCCCCCCCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCCHHHHHHHHHHH
Q 047934 144 EQKPNRNEPISEPPQEADEIFKKMKETGLIPNA---VAMLDGLCKDGLIQEAMKLFGLMRE--KGTIPEVVIYTAVVDGF 218 (344)
Q Consensus 144 y~~~~~~~~~sg~~~~A~~lf~~M~~~gi~p~~---~tli~~~~k~g~~~~A~~lf~~M~~--~g~~pd~~tyn~LI~ay 218 (344)
|...+..|.+.|++++|.++|++|.+.|+.|+. ++||.+|++.|++++|+++|++|.+ .|+.||.+||++||.+|
T Consensus 510 ynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay 589 (1060)
T PLN03218 510 FGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKAC 589 (1060)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHH
Confidence 333345666688899999999999999999984 4799999999999999999999986 57899999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 047934 219 CKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRERGVEKAQ 298 (344)
Q Consensus 219 ~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~~e~a~ 298 (344)
+++|++++|+++|+.|.+.|+.|+..+|++||.+|++.|++++|+++|++|.+.|+.||..||++||.+|++.|++++|.
T Consensus 590 ~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~ 669 (1060)
T PLN03218 590 ANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAF 669 (1060)
T ss_pred HHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHCCCcccHHHHHHHHhccCCCChH
Q 047934 299 SVIATLKEKGFLVNDKAVREFLDKKAPFSSS 329 (344)
Q Consensus 299 ~l~~~M~~~Gi~p~~~~~~~Ll~~yak~g~~ 329 (344)
++|++|.+.|+.|+..+|++||++|+++|..
T Consensus 670 ~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~ 700 (1060)
T PLN03218 670 EILQDARKQGIKLGTVSYSSLMGACSNAKNW 700 (1060)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhCCCH
Confidence 9999999999999999999999999999863
No 5
>PLN03077 Protein ECB2; Provisional
Probab=99.96 E-value=1.1e-29 Score=271.62 Aligned_cols=217 Identities=20% Similarity=0.231 Sum_probs=187.7
Q ss_pred CCCCccCchhHHhhhhhcCCCCCCCCCcccccchhcccccCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHcC
Q 047934 108 SPDGVQSDENFLDQFKLAIDKKPGNPQQNESLGQRQEQKPNRNEPISEPPQEADEIFKKMKETGLIPNAVAMLDGLCKDG 187 (344)
Q Consensus 108 ~~~~~~~~h~~~~k~gl~~~~~v~~~l~~~~~~~~~y~~~~~~~~~sg~~~~A~~lf~~M~~~gi~p~~~tli~~~~k~g 187 (344)
..+.+.++|..+++.|+..+..+.++++ ..|.+ +|++++|.++|++|.++++. +|++||.+|++.|
T Consensus 404 ~~~~a~~l~~~~~~~g~~~~~~~~n~Li------~~y~k-------~g~~~~A~~vf~~m~~~d~v-s~~~mi~~~~~~g 469 (857)
T PLN03077 404 DLDVGVKLHELAERKGLISYVVVANALI------EMYSK-------CKCIDKALEVFHNIPEKDVI-SWTSIIAGLRLNN 469 (857)
T ss_pred hHHHHHHHHHHHHHhCCCcchHHHHHHH------HHHHH-------cCCHHHHHHHHHhCCCCCee-eHHHHHHHHHHCC
Confidence 3456778999999999999998888888 55544 56699999999999998877 6999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHH-----------------------------------HHHHHcCCHHHHHHHHH
Q 047934 188 LIQEAMKLFGLMREKGTIPEVVIYTAVV-----------------------------------DGFCKAQKFDDAKRIFR 232 (344)
Q Consensus 188 ~~~~A~~lf~~M~~~g~~pd~~tyn~LI-----------------------------------~ay~k~g~~e~A~~vf~ 232 (344)
+.++|+++|++|.+ +++||..||+++| ++|+++|++++|.++|+
T Consensus 470 ~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~ 548 (857)
T PLN03077 470 RCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFN 548 (857)
T ss_pred CHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999975 5788887776655 55555555555655555
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HCCCcc
Q 047934 233 KMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRERGVEKAQSVIATLK-EKGFLV 311 (344)
Q Consensus 233 ~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~~e~a~~l~~~M~-~~Gi~p 311 (344)
.| .+|.++||+||.+|++.|+.++|+++|++|.+.|+.||..||+++|.+|++.|++++|.++|+.|. +.|+.|
T Consensus 549 ~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P 623 (857)
T PLN03077 549 SH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITP 623 (857)
T ss_pred hc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCC
Confidence 54 568999999999999999999999999999999999999999999999999999999999999999 789999
Q ss_pred cHHHHHHHHhccCCCChH-----------------HHHHHhcCccCCCCC
Q 047934 312 NDKAVREFLDKKAPFSSS-----------------VWEAIFGKKTLQKPF 344 (344)
Q Consensus 312 ~~~~~~~Ll~~yak~g~~-----------------~W~all~~~~~~~~~ 344 (344)
+..+|++++++|++.|.. +|++++++|+.|+.+
T Consensus 624 ~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~ 673 (857)
T PLN03077 624 NLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHV 673 (857)
T ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCh
Confidence 999999999999999953 399999999998863
No 6
>PLN03077 Protein ECB2; Provisional
Probab=99.96 E-value=6.1e-29 Score=265.91 Aligned_cols=203 Identities=17% Similarity=0.236 Sum_probs=147.7
Q ss_pred CCCccCchhHHhhhhhcCCCCCCCCCcccccchhcccccCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHcCC
Q 047934 109 PDGVQSDENFLDQFKLAIDKKPGNPQQNESLGQRQEQKPNRNEPISEPPQEADEIFKKMKETGLIPNAVAMLDGLCKDGL 188 (344)
Q Consensus 109 ~~~~~~~h~~~~k~gl~~~~~v~~~l~~~~~~~~~y~~~~~~~~~sg~~~~A~~lf~~M~~~gi~p~~~tli~~~~k~g~ 188 (344)
...+.++|+++++.|+..+.++.++|+ ..|.+ +|++++|.++|++|.+.++. +|++||.+|++.|+
T Consensus 203 ~~~~~~~~~~~~~~g~~~~~~~~n~Li------~~y~k-------~g~~~~A~~lf~~m~~~d~~-s~n~li~~~~~~g~ 268 (857)
T PLN03077 203 LARGREVHAHVVRFGFELDVDVVNALI------TMYVK-------CGDVVSARLVFDRMPRRDCI-SWNAMISGYFENGE 268 (857)
T ss_pred hhhHHHHHHHHHHcCCCcccchHhHHH------HHHhc-------CCCHHHHHHHHhcCCCCCcc-hhHHHHHHHHhCCC
Confidence 345678999999999999999999998 44433 34455555555555554444 35555555555555
Q ss_pred HHHHHHHHHHHHHcCC-----------------------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 047934 189 IQEAMKLFGLMREKGT-----------------------------------IPEVVIYTAVVDGFCKAQKFDDAKRIFRK 233 (344)
Q Consensus 189 ~~~A~~lf~~M~~~g~-----------------------------------~pd~~tyn~LI~ay~k~g~~e~A~~vf~~ 233 (344)
+++|+++|++|.+.|+ .||..+||+||.+|+++|++++|+++|++
T Consensus 269 ~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~ 348 (857)
T PLN03077 269 CLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSR 348 (857)
T ss_pred HHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhh
Confidence 5555555555555554 45555555555555566666666666665
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCcccH
Q 047934 234 MQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRERGVEKAQSVIATLKEKGFLVND 313 (344)
Q Consensus 234 M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~~e~a~~l~~~M~~~Gi~p~~ 313 (344)
|. +||.++||+||.+|++.|++++|+++|++|.+.|+.||..||+.+|.+|++.|++++|.++++.|.+.|+.++.
T Consensus 349 m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~ 424 (857)
T PLN03077 349 ME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYV 424 (857)
T ss_pred CC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcch
Confidence 54 34666677777777777777788888888888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCCChH
Q 047934 314 KAVREFLDKKAPFSSS 329 (344)
Q Consensus 314 ~~~~~Ll~~yak~g~~ 329 (344)
.++++||++|+++|..
T Consensus 425 ~~~n~Li~~y~k~g~~ 440 (857)
T PLN03077 425 VVANALIEMYSKCKCI 440 (857)
T ss_pred HHHHHHHHHHHHcCCH
Confidence 9999999999999964
No 7
>PF13041 PPR_2: PPR repeat family
Probab=99.43 E-value=3.8e-13 Score=93.05 Aligned_cols=49 Identities=45% Similarity=1.074 Sum_probs=24.9
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 047934 206 PEVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLY 254 (344)
Q Consensus 206 pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~ 254 (344)
||+++||+||++|++.|++++|.++|++|.+.|++||..||++||++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4445555555555555555555555555555555555555555555544
No 8
>PF13041 PPR_2: PPR repeat family
Probab=99.41 E-value=5.1e-13 Score=92.38 Aligned_cols=50 Identities=40% Similarity=0.719 Sum_probs=46.8
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 047934 241 PNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCR 290 (344)
Q Consensus 241 pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~ 290 (344)
||+++||+||.+|++.|++++|.++|++|.+.|+.||..||++||++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999874
No 9
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.17 E-value=4.6e-10 Score=109.09 Aligned_cols=156 Identities=15% Similarity=0.091 Sum_probs=80.4
Q ss_pred CCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 047934 154 SEPPQEADEIFKKMKETGLI--PNAVAMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRIF 231 (344)
Q Consensus 154 sg~~~~A~~lf~~M~~~gi~--p~~~tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf 231 (344)
.|++++|.++|+++.+..-. ..+..+...|.+.|++++|.++|+++.+.+-.....+++.+..+|.+.|++++|...+
T Consensus 193 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l 272 (389)
T PRK11788 193 RGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFL 272 (389)
T ss_pred CCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 45555666665555543211 0112344555555666666666655554322112344555555566666666666666
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHCC
Q 047934 232 RKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCR---ERGVEKAQSVIATLKEKG 308 (344)
Q Consensus 232 ~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~---~G~~e~a~~l~~~M~~~G 308 (344)
+.+.+. .|+...+..+...|.+.|++++|..+++++.+. .|+..++..++..+.. .|+.+++..+++.|.+.+
T Consensus 273 ~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~ 348 (389)
T PRK11788 273 RRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQ 348 (389)
T ss_pred HHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHH
Confidence 555543 244444455555555566666666665555443 4555555555555443 335555555666555555
Q ss_pred CcccH
Q 047934 309 FLVND 313 (344)
Q Consensus 309 i~p~~ 313 (344)
+.++.
T Consensus 349 ~~~~p 353 (389)
T PRK11788 349 LKRKP 353 (389)
T ss_pred HhCCC
Confidence 54443
No 10
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.15 E-value=6.6e-09 Score=100.97 Aligned_cols=169 Identities=14% Similarity=0.086 Sum_probs=134.0
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 047934 151 EPISEPPQEADEIFKKMKETGLIPNA-------VAMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQK 223 (344)
Q Consensus 151 ~~~sg~~~~A~~lf~~M~~~gi~p~~-------~tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~ 223 (344)
+...|++++|.++|+.+.+.+-.+.. ..+...+.+.|+.++|..+|+++.+.. +.+..++..+...|.+.|+
T Consensus 151 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~ 229 (389)
T PRK11788 151 YQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGD 229 (389)
T ss_pred HHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCC
Confidence 34467889999999988876533221 134556778899999999999988753 3356678888899999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 047934 224 FDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRERGVEKAQSVIAT 303 (344)
Q Consensus 224 ~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~~e~a~~l~~~ 303 (344)
+++|.++|+++.+.+......+++.++.+|.+.|++++|...++++.+. .|+...+..+...+.+.|++++|..++++
T Consensus 230 ~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~ 307 (389)
T PRK11788 230 YAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLRE 307 (389)
T ss_pred HHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 9999999999987633323467889999999999999999999998876 46767778899999999999999999998
Q ss_pred HHHCCCcccHHHHHHHHhccC
Q 047934 304 LKEKGFLVNDKAVREFLDKKA 324 (344)
Q Consensus 304 M~~~Gi~p~~~~~~~Ll~~ya 324 (344)
+.+. .|+...+..++..+.
T Consensus 308 ~l~~--~P~~~~~~~l~~~~~ 326 (389)
T PRK11788 308 QLRR--HPSLRGFHRLLDYHL 326 (389)
T ss_pred HHHh--CcCHHHHHHHHHHhh
Confidence 8876 688888888887655
No 11
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.11 E-value=3.3e-09 Score=101.95 Aligned_cols=174 Identities=16% Similarity=0.179 Sum_probs=135.2
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCCHH---HHHHH--HHHcCCHHHH-HHHHHHHHHcC-------------------CCC
Q 047934 152 PISEPPQEADEIFKKMKETGLIPNAV---AMLDG--LCKDGLIQEA-MKLFGLMREKG-------------------TIP 206 (344)
Q Consensus 152 ~~sg~~~~A~~lf~~M~~~gi~p~~~---tli~~--~~k~g~~~~A-~~lf~~M~~~g-------------------~~p 206 (344)
..+|.+.++.-+++.|.++|+..+.- .|+.. |..+..+--| .+-|-.|.+.| .+-
T Consensus 126 IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL~~E~~PK 205 (625)
T KOG4422|consen 126 ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADLLFETLPK 205 (625)
T ss_pred HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHHHHHhhcCC
Confidence 34778999999999999998765543 23322 2222221111 11222332211 133
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 047934 207 EVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVD 286 (344)
Q Consensus 207 d~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~ 286 (344)
+..||.+||.++||--..+.|.+++++-.+...+.+..+||.+|.+-.-.- ..++..+|....+.||..|||++|+
T Consensus 206 T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm~Pnl~TfNalL~ 281 (625)
T KOG4422|consen 206 TDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMISQKMTPNLFTFNALLS 281 (625)
T ss_pred CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhcCCchHhHHHHHH
Confidence 678999999999999999999999999999999999999999998755432 3788999999999999999999999
Q ss_pred HHHHcCCHHH----HHHHHHHHHHCCCcccHHHHHHHHhccCCCChH
Q 047934 287 GLCRERGVEK----AQSVIATLKEKGFLVNDKAVREFLDKKAPFSSS 329 (344)
Q Consensus 287 a~~~~G~~e~----a~~l~~~M~~~Gi~p~~~~~~~Ll~~yak~g~~ 329 (344)
+.++.|+++. |.+++.+|++-|+.|+..+|..+|.-+.+.++.
T Consensus 282 c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp 328 (625)
T KOG4422|consen 282 CAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDP 328 (625)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCc
Confidence 9999998776 478889999999999999999999988877765
No 12
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.05 E-value=3.7e-09 Score=101.68 Aligned_cols=143 Identities=24% Similarity=0.366 Sum_probs=116.5
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 047934 154 SEPPQEADEIFKKMKETGLIPNAVAMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRIFRK 233 (344)
Q Consensus 154 sg~~~~A~~lf~~M~~~gi~p~~~tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~ 233 (344)
+|++.+ -+|+..++.+- +..+||.|+|+-...+.|.+++++-.....+.+..+||.||.+-+-.. ..++..+
T Consensus 192 ~G~vAd--L~~E~~PKT~e--t~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~E 263 (625)
T KOG4422|consen 192 SGAVAD--LLFETLPKTDE--TVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAE 263 (625)
T ss_pred cccHHH--HHHhhcCCCch--hHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHH
Confidence 455444 45554443221 345799999999999999999999999989999999999998866443 3889999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHH
Q 047934 234 MQSNGIAPNAFSYNLLIQGLYKCNKLEE----AVEYCIEMLEAGHSPNVTTFVGLVDGLCRERGVEK-AQSVIATL 304 (344)
Q Consensus 234 M~~~gi~pd~~tyn~LI~ay~k~g~~~~----A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~~e~-a~~l~~~M 304 (344)
|....+.||..|+|+++.+.++.|+++. |.+++-+|++-|++|...+|..+|.-+++.++..+ +..++.++
T Consensus 264 Misqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI 339 (625)
T KOG4422|consen 264 MISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDI 339 (625)
T ss_pred HHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHH
Confidence 9999999999999999999999998875 56788899999999999999999999999887643 44444443
No 13
>PF12854 PPR_1: PPR repeat
Probab=98.80 E-value=6.3e-09 Score=65.98 Aligned_cols=32 Identities=41% Similarity=0.694 Sum_probs=16.4
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 047934 238 GIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEM 269 (344)
Q Consensus 238 gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M 269 (344)
|+.||.+|||+||.+||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44455555555555555555555555555544
No 14
>PF12854 PPR_1: PPR repeat
Probab=98.77 E-value=8.8e-09 Score=65.29 Aligned_cols=34 Identities=41% Similarity=0.932 Sum_probs=32.3
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 047934 202 KGTIPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQ 235 (344)
Q Consensus 202 ~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~ 235 (344)
+|+.||.+|||+||++||+.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 4899999999999999999999999999999984
No 15
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.75 E-value=1.3e-06 Score=92.18 Aligned_cols=173 Identities=15% Similarity=0.102 Sum_probs=119.7
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 047934 152 PISEPPQEADEIFKKMKETGLIP-NAVAMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRI 230 (344)
Q Consensus 152 ~~sg~~~~A~~lf~~M~~~gi~p-~~~tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~v 230 (344)
...|++++|.+.|+.+.+.+-.+ .+..+...+.+.|++++|.+.++.+.+.. +.+..++..+...|.+.|++++|..+
T Consensus 714 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~ 792 (899)
T TIGR02917 714 LRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKH 792 (899)
T ss_pred HHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHH
Confidence 34566666666666666543222 12245666667777777777776666542 34667777777777777777777777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCc
Q 047934 231 FRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRERGVEKAQSVIATLKEKGFL 310 (344)
Q Consensus 231 f~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~~e~a~~l~~~M~~~Gi~ 310 (344)
|+++.+.. ..+..+++.+...|.+.|+ ++|++.+++..... .-+..++..+...+...|++++|.++++.+.+.+-.
T Consensus 793 ~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~ 869 (899)
T TIGR02917 793 YRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE 869 (899)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 77776653 3466677777777777777 66777777776542 224455667777788899999999999999987654
Q ss_pred ccHHHHHHHHhccCCCChH
Q 047934 311 VNDKAVREFLDKKAPFSSS 329 (344)
Q Consensus 311 p~~~~~~~Ll~~yak~g~~ 329 (344)
+..++..+...|.+.|..
T Consensus 870 -~~~~~~~l~~~~~~~g~~ 887 (899)
T TIGR02917 870 -AAAIRYHLALALLATGRK 887 (899)
T ss_pred -ChHHHHHHHHHHHHcCCH
Confidence 788888888888888863
No 16
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.71 E-value=1.6e-06 Score=91.43 Aligned_cols=151 Identities=11% Similarity=0.047 Sum_probs=72.5
Q ss_pred CCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 047934 154 SEPPQEADEIFKKMKETGLI--PNAVAMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRIF 231 (344)
Q Consensus 154 sg~~~~A~~lf~~M~~~gi~--p~~~tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf 231 (344)
.|++++|.++++.+.+..-. ..|..+...|...|++++|...|+.+.+.. +.+...+..+..+|...|++++|..+|
T Consensus 580 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 658 (899)
T TIGR02917 580 KGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSL 658 (899)
T ss_pred CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHH
Confidence 44555555555555432211 012234455555555555555555554432 223444555555555555555555555
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 047934 232 RKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRERGVEKAQSVIATLKEK 307 (344)
Q Consensus 232 ~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~~e~a~~l~~~M~~~ 307 (344)
+++.+.. +.+..+|..+...+...|++++|.++++.+.... ..+...+..+...+...|++++|.+.+..+...
T Consensus 659 ~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 732 (899)
T TIGR02917 659 KRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKR 732 (899)
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Confidence 5554431 1234455555555555555555555555554432 223444444555555555555555555555543
No 17
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.57 E-value=1.9e-05 Score=69.39 Aligned_cols=176 Identities=11% Similarity=0.057 Sum_probs=135.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCC-C-CHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 047934 150 NEPISEPPQEADEIFKKMKETGLI-P-NAVAMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDA 227 (344)
Q Consensus 150 ~~~~sg~~~~A~~lf~~M~~~gi~-p-~~~tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A 227 (344)
.+...|++++|.+.|++..+..-. + .+..+...|...|++++|.+.|+...+.. +.+...+..+...|...|++++|
T Consensus 40 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~g~~~~A 118 (234)
T TIGR02521 40 GYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFLCQQGKYEQA 118 (234)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcccHHHH
Confidence 445578999999999998765311 1 12346778889999999999999888764 33667888889999999999999
Q ss_pred HHHHHHHHHCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 047934 228 KRIFRKMQSNGI-APNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRERGVEKAQSVIATLKE 306 (344)
Q Consensus 228 ~~vf~~M~~~gi-~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~~e~a~~l~~~M~~ 306 (344)
.+.|+....... ......|..+..+|...|++++|...|++..... ..+...+..+...+...|++++|.+++++..+
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 197 (234)
T TIGR02521 119 MQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDARAYLERYQQ 197 (234)
T ss_pred HHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999987532 2245577778889999999999999999987753 22466788888899999999999999999887
Q ss_pred CCCcccHHHHHHHHhccCCCCh
Q 047934 307 KGFLVNDKAVREFLDKKAPFSS 328 (344)
Q Consensus 307 ~Gi~p~~~~~~~Ll~~yak~g~ 328 (344)
. ...+...+..+...+...|.
T Consensus 198 ~-~~~~~~~~~~~~~~~~~~~~ 218 (234)
T TIGR02521 198 T-YNQTAESLWLGIRIARALGD 218 (234)
T ss_pred h-CCCCHHHHHHHHHHHHHHhh
Confidence 6 33344555555555555554
No 18
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.42 E-value=7.2e-05 Score=65.66 Aligned_cols=155 Identities=15% Similarity=0.049 Sum_probs=123.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHcCCHHH
Q 047934 150 NEPISEPPQEADEIFKKMKETGLIP--NAVAMLDGLCKDGLIQEAMKLFGLMREKGT-IPEVVIYTAVVDGFCKAQKFDD 226 (344)
Q Consensus 150 ~~~~sg~~~~A~~lf~~M~~~gi~p--~~~tli~~~~k~g~~~~A~~lf~~M~~~g~-~pd~~tyn~LI~ay~k~g~~e~ 226 (344)
.+...|++++|.+.|++..+..-.. .+..+...|...|++++|.+.|+...+... ......+..+-..|...|++++
T Consensus 74 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 153 (234)
T TIGR02521 74 YYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDK 153 (234)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHH
Confidence 3445789999999999888754221 123467788899999999999999887532 2345667778888999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 047934 227 AKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRERGVEKAQSVIATLKE 306 (344)
Q Consensus 227 A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~~e~a~~l~~~M~~ 306 (344)
|...|++..... ..+...|..+...+...|++++|...+++.... ...+...+..+...+...|+.++|..+.+.+.+
T Consensus 154 A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 154 AEKYLTRALQID-PQRPESLLELAELYYLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 999999988753 225678889999999999999999999998876 344667777788888899999999999887765
No 19
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=98.35 E-value=7.3e-06 Score=85.18 Aligned_cols=83 Identities=17% Similarity=0.243 Sum_probs=70.9
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCcccHHHHHHH
Q 047934 240 APNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRERGVEKAQSVIATLKEKGFLVNDKAVREF 319 (344)
Q Consensus 240 ~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~~e~a~~l~~~M~~~Gi~p~~~~~~~L 319 (344)
.|+..+|.+++++-.-+|+.+.|..++.+|++.|+..+..-|-.||-+ .++..-+..++.-|...|+.|+.+|+...
T Consensus 201 ~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~ady 277 (1088)
T KOG4318|consen 201 APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADY 277 (1088)
T ss_pred CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHH
Confidence 478888888888888889999999999999999988888888888777 78888888888888899999999998888
Q ss_pred HhccCC
Q 047934 320 LDKKAP 325 (344)
Q Consensus 320 l~~yak 325 (344)
+-.+.+
T Consensus 278 vip~l~ 283 (1088)
T KOG4318|consen 278 VIPQLS 283 (1088)
T ss_pred HHhhhc
Confidence 876665
No 20
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.30 E-value=1e-06 Score=55.02 Aligned_cols=33 Identities=52% Similarity=0.816 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 047934 245 SYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPN 277 (344)
Q Consensus 245 tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd 277 (344)
+||+||.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 455666666666666666666666655555554
No 21
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.28 E-value=1.2e-05 Score=75.00 Aligned_cols=173 Identities=18% Similarity=0.118 Sum_probs=108.9
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHcCCHHHHHH
Q 047934 152 PISEPPQEADEIFKKMKETGLIPN-AVAMLDGLCKDGLIQEAMKLFGLMREKG-TIPEVVIYTAVVDGFCKAQKFDDAKR 229 (344)
Q Consensus 152 ~~sg~~~~A~~lf~~M~~~gi~p~-~~tli~~~~k~g~~~~A~~lf~~M~~~g-~~pd~~tyn~LI~ay~k~g~~e~A~~ 229 (344)
+..+++++|.+++....++.-.|. +..++..+.+.++++++.++++...... .+.+...|..+-..+.+.|+.++|+.
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~ 167 (280)
T PF13429_consen 88 LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALR 167 (280)
T ss_dssp ------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHH
T ss_pred cccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 457789999999887766543333 3467888999999999999999877543 45688889999999999999999999
Q ss_pred HHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 047934 230 IFRKMQSNGIAP-NAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRERGVEKAQSVIATLKEKG 308 (344)
Q Consensus 230 vf~~M~~~gi~p-d~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~~e~a~~l~~~M~~~G 308 (344)
++++..+. .| |....+.++..+...|+.+++.+++....... ..|...+..+-.+|...|+.++|..+++...+..
T Consensus 168 ~~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~ 244 (280)
T PF13429_consen 168 DYRKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN 244 (280)
T ss_dssp HHHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc
Confidence 99999886 45 47788899999999999999999988877654 4455677888999999999999999999988742
Q ss_pred CcccHHHHHHHHhccCCCCh
Q 047934 309 FLVNDKAVREFLDKKAPFSS 328 (344)
Q Consensus 309 i~p~~~~~~~Ll~~yak~g~ 328 (344)
.-|..+...+-+.+...|.
T Consensus 245 -p~d~~~~~~~a~~l~~~g~ 263 (280)
T PF13429_consen 245 -PDDPLWLLAYADALEQAGR 263 (280)
T ss_dssp -TT-HHHHHHHHHHHT----
T ss_pred -ccccccccccccccccccc
Confidence 2256666677777777765
No 22
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.26 E-value=1.4e-06 Score=54.33 Aligned_cols=34 Identities=35% Similarity=0.871 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 047934 210 IYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNA 243 (344)
Q Consensus 210 tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~ 243 (344)
+||+||.+|++.|++++|.++|++|.+.|+.||.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 6888888888888888888888888888888873
No 23
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.24 E-value=1.7e-06 Score=54.05 Aligned_cols=32 Identities=31% Similarity=0.468 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 047934 245 SYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSP 276 (344)
Q Consensus 245 tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~p 276 (344)
||+++|.+|++.|+++.|.++|++|++.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 44444444444444444444444444444443
No 24
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.21 E-value=2.1e-06 Score=53.59 Aligned_cols=33 Identities=30% Similarity=0.540 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 047934 209 VIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAP 241 (344)
Q Consensus 209 ~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~p 241 (344)
.|||++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 466777777777777777777777776666665
No 25
>PRK12370 invasion protein regulator; Provisional
Probab=98.18 E-value=0.00039 Score=71.59 Aligned_cols=169 Identities=12% Similarity=-0.075 Sum_probs=120.3
Q ss_pred CCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 047934 154 SEPPQEADEIFKKMKETGLIPN--AVAMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRIF 231 (344)
Q Consensus 154 sg~~~~A~~lf~~M~~~gi~p~--~~tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf 231 (344)
.+++++|...+++..+.+-.-. +..+-..+...|++++|...|++..+.. +-+...+..+-..|...|++++|...+
T Consensus 317 ~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~ 395 (553)
T PRK12370 317 QNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTI 395 (553)
T ss_pred chHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 3568899999998877542211 2234556778999999999999988764 335677888888999999999999999
Q ss_pred HHHHHCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 047934 232 RKMQSNGIAPNA-FSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSP-NVTTFVGLVDGLCRERGVEKAQSVIATLKEKGF 309 (344)
Q Consensus 232 ~~M~~~gi~pd~-~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~p-d~~ty~~lL~a~~~~G~~e~a~~l~~~M~~~Gi 309 (344)
++..+.. |+. ..+..+...+...|++++|...+++..... .| +...+..+-.++...|+.++|...+..+...
T Consensus 396 ~~Al~l~--P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~-- 470 (553)
T PRK12370 396 NECLKLD--PTRAAAGITKLWITYYHTGIDDAIRLGDELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ-- 470 (553)
T ss_pred HHHHhcC--CCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--
Confidence 9998863 432 233444555777899999999999987653 24 3444666777778899999999999887544
Q ss_pred ccc-HHHHHHHHhccCCCCh
Q 047934 310 LVN-DKAVREFLDKKAPFSS 328 (344)
Q Consensus 310 ~p~-~~~~~~Ll~~yak~g~ 328 (344)
.|+ ....+.+-..|...|.
T Consensus 471 ~~~~~~~~~~l~~~~~~~g~ 490 (553)
T PRK12370 471 EITGLIAVNLLYAEYCQNSE 490 (553)
T ss_pred cchhHHHHHHHHHHHhccHH
Confidence 233 3334444445555554
No 26
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.12 E-value=0.00036 Score=73.29 Aligned_cols=172 Identities=12% Similarity=0.016 Sum_probs=112.9
Q ss_pred CCCCCHHHHHHHHHHHHHCCCC-CC-HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 047934 152 PISEPPQEADEIFKKMKETGLI-PN-AVAMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKR 229 (344)
Q Consensus 152 ~~sg~~~~A~~lf~~M~~~gi~-p~-~~tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~ 229 (344)
...|++++|.+.|+++.+..=. +. +..+-..+.+.|+.++|...|+...+. -+.+...+..+...+...|++++|..
T Consensus 87 l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l-~P~~~~a~~~la~~l~~~g~~~eA~~ 165 (656)
T PRK15174 87 LASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLA-FSGNSQIFALHLRTLVLMDKELQAIS 165 (656)
T ss_pred hhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHCCChHHHHH
Confidence 3478888999999888764311 11 234667778888888888888887764 23356777888888888888888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 047934 230 IFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRERGVEKAQSVIATLKEKGF 309 (344)
Q Consensus 230 vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~~e~a~~l~~~M~~~Gi 309 (344)
.++.+....-. +...+..+ ..+...|++++|..+++.+....-.++...+..+..++...|+.++|...+..+.+..-
T Consensus 166 ~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p 243 (656)
T PRK15174 166 LARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGL 243 (656)
T ss_pred HHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 88877654322 22233233 34777888888888888876654333444555556677788888888888888776531
Q ss_pred cccHHHHHHHHhccCCCC
Q 047934 310 LVNDKAVREFLDKKAPFS 327 (344)
Q Consensus 310 ~p~~~~~~~Ll~~yak~g 327 (344)
-+...+..+-..|...|
T Consensus 244 -~~~~~~~~Lg~~l~~~G 260 (656)
T PRK15174 244 -DGAALRRSLGLAYYQSG 260 (656)
T ss_pred -CCHHHHHHHHHHHHHcC
Confidence 12333333444444333
No 27
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.07 E-value=0.0006 Score=71.65 Aligned_cols=152 Identities=13% Similarity=0.099 Sum_probs=92.9
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH---
Q 047934 153 ISEPPQEADEIFKKMKETGLIPNA---VAMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDD--- 226 (344)
Q Consensus 153 ~sg~~~~A~~lf~~M~~~gi~p~~---~tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~--- 226 (344)
..|++++|..+++.+.+..-.+.. ..+...+...|+.++|.+.|+...+.. +-+...+..+-.+|...|++++
T Consensus 189 ~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~ 267 (656)
T PRK15174 189 NKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKL 267 (656)
T ss_pred HcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHH
Confidence 356666666666665544211111 123455666677777777776666543 2345666666677777777664
Q ss_pred -HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 047934 227 -AKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRERGVEKAQSVIATLK 305 (344)
Q Consensus 227 -A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~~e~a~~l~~~M~ 305 (344)
|+..|+...+.. .-+...+..+...|.+.|++++|+..+++..... .-+...+..+..++...|++++|...++.+.
T Consensus 268 ~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al 345 (656)
T PRK15174 268 QAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLA 345 (656)
T ss_pred HHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 667777666542 1245567777777777777777777777766542 1134455566677777777777777777776
Q ss_pred HC
Q 047934 306 EK 307 (344)
Q Consensus 306 ~~ 307 (344)
..
T Consensus 346 ~~ 347 (656)
T PRK15174 346 RE 347 (656)
T ss_pred Hh
Confidence 54
No 28
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=98.04 E-value=0.00055 Score=71.23 Aligned_cols=153 Identities=14% Similarity=-0.028 Sum_probs=118.0
Q ss_pred CCCCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 047934 152 PISEPPQEADEIFKKMKETGLI--PNAVAMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKR 229 (344)
Q Consensus 152 ~~sg~~~~A~~lf~~M~~~gi~--p~~~tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~ 229 (344)
...|++++|+..|++..+..-. -.+..+-..+...|++++|...|+...+.. +-+..+|..+-..|...|++++|..
T Consensus 342 ~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~ 420 (615)
T TIGR00990 342 CLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGK 420 (615)
T ss_pred HHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 3468899999999887764311 012345666778899999999998887653 3357888888888999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 047934 230 IFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRERGVEKAQSVIATLKEK 307 (344)
Q Consensus 230 vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~~e~a~~l~~~M~~~ 307 (344)
.|++..+.. ..+...|..+-.+|.+.|++++|+..|++..... .-+...|..+-..+...|++++|.+.|+.....
T Consensus 421 ~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l 496 (615)
T TIGR00990 421 DYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL 496 (615)
T ss_pred HHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 999887753 2246677788888889999999999999887642 234677888888889999999999999987764
No 29
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=98.04 E-value=0.00088 Score=69.74 Aligned_cols=171 Identities=13% Similarity=0.021 Sum_probs=130.8
Q ss_pred CCCHHHHHHHHHHHHHCC-CCCCHH----HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 047934 154 SEPPQEADEIFKKMKETG-LIPNAV----AMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAK 228 (344)
Q Consensus 154 sg~~~~A~~lf~~M~~~g-i~p~~~----tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~ 228 (344)
.+.+++|.+.|+...+.+ ..|+.. .+-..+...|++++|+..|+...+.. +-+..+|..+-..+...|++++|.
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~ 385 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAE 385 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHH
Confidence 357899999999988765 344322 34556667999999999999887652 224668888899999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 047934 229 RIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRERGVEKAQSVIATLKEKG 308 (344)
Q Consensus 229 ~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~~e~a~~l~~~M~~~G 308 (344)
..|+...+.. .-+...|..+-..|...|++++|...|++..+.. ..+...+..+-..+.+.|++++|...++...+..
T Consensus 386 ~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 463 (615)
T TIGR00990 386 EDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF 463 (615)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 9999987763 2357889999999999999999999999988753 2246667778888889999999999999988642
Q ss_pred CcccHHHHHHHHhccCCCCh
Q 047934 309 FLVNDKAVREFLDKKAPFSS 328 (344)
Q Consensus 309 i~p~~~~~~~Ll~~yak~g~ 328 (344)
.-+...+..+-..|...|.
T Consensus 464 -P~~~~~~~~lg~~~~~~g~ 482 (615)
T TIGR00990 464 -PEAPDVYNYYGELLLDQNK 482 (615)
T ss_pred -CCChHHHHHHHHHHHHccC
Confidence 2234555555555554443
No 30
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.02 E-value=6.6e-05 Score=70.07 Aligned_cols=152 Identities=15% Similarity=0.141 Sum_probs=103.8
Q ss_pred CCCCCHHHHHHHHHHHHHCCC-CCCHH---HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 047934 152 PISEPPQEADEIFKKMKETGL-IPNAV---AMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDA 227 (344)
Q Consensus 152 ~~sg~~~~A~~lf~~M~~~gi-~p~~~---tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A 227 (344)
...++++++.++++...+..- ..+.. .+-..+.+.|+.++|+++|+...+.. +-|..+.+.++..+...|+.+++
T Consensus 121 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~ 199 (280)
T PF13429_consen 121 YRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELD-PDDPDARNALAWLLIDMGDYDEA 199 (280)
T ss_dssp HHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHH
T ss_pred HHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHH
Confidence 346889999999999876432 22332 45667788999999999999988763 22578899999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 047934 228 KRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRERGVEKAQSVIATLKE 306 (344)
Q Consensus 228 ~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~~e~a~~l~~~M~~ 306 (344)
..++....+.. ..|...|..+-.+|...|+.++|+..|++..... +-|......+..++...|+.++|.++.....+
T Consensus 200 ~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 200 REALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT-----------------
T ss_pred HHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-cccccccccccccccccccccccccccccccc
Confidence 99998887653 4456688999999999999999999999987742 33788888999999999999999998876543
No 31
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.97 E-value=7.1e-06 Score=49.91 Aligned_cols=28 Identities=46% Similarity=0.590 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 047934 245 SYNLLIQGLYKCNKLEEAVEYCIEMLEA 272 (344)
Q Consensus 245 tyn~LI~ay~k~g~~~~A~~lf~~M~~~ 272 (344)
||++||++|++.|++++|.++|++|.+.
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRER 29 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHC
Confidence 3444444444444444444444444443
No 32
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.97 E-value=7.6e-06 Score=49.78 Aligned_cols=31 Identities=35% Similarity=0.911 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 047934 209 VIYTAVVDGFCKAQKFDDAKRIFRKMQSNGI 239 (344)
Q Consensus 209 ~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi 239 (344)
+|||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3788888888888888888888888887764
No 33
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=97.93 E-value=0.0014 Score=64.69 Aligned_cols=170 Identities=11% Similarity=0.042 Sum_probs=109.8
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-------------------------
Q 047934 154 SEPPQEADEIFKKMKETGLIPNA--VAMLDGLCKDGLIQEAMKLFGLMREKGTIP------------------------- 206 (344)
Q Consensus 154 sg~~~~A~~lf~~M~~~gi~p~~--~tli~~~~k~g~~~~A~~lf~~M~~~g~~p------------------------- 206 (344)
.|++++|.+.++++.+..-...+ ..+...|.+.|++++|.+++..+.+.+..+
T Consensus 166 ~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~ 245 (398)
T PRK10747 166 RNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGS 245 (398)
T ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 56777777777777665422111 146777777777777777777776554321
Q ss_pred ----------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 047934 207 ----------------EVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEML 270 (344)
Q Consensus 207 ----------------d~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~ 270 (344)
+.....++...+...|+.++|.+++++..+. .+|.. -.++.+....++.+++++..+...
T Consensus 246 ~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~--l~~l~~~l~~~~~~~al~~~e~~l 321 (398)
T PRK10747 246 EGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDER--LVLLIPRLKTNNPEQLEKVLRQQI 321 (398)
T ss_pred HHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHH--HHHHHhhccCCChHHHHHHHHHHH
Confidence 1222234455556666666666666666553 33331 112333334467777777776666
Q ss_pred HcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCcccHHHHHHHHhccCCCChHH
Q 047934 271 EAGHSPNVTTFVGLVDGLCRERGVEKAQSVIATLKEKGFLVNDKAVREFLDKKAPFSSSV 330 (344)
Q Consensus 271 ~~gv~pd~~ty~~lL~a~~~~G~~e~a~~l~~~M~~~Gi~p~~~~~~~Ll~~yak~g~~~ 330 (344)
+.. +-|...+.++-..|.+.+++++|++.|+.+.+. .|+..++..|-..+.+.|...
T Consensus 322 k~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~ 378 (398)
T PRK10747 322 KQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPE 378 (398)
T ss_pred hhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHH
Confidence 542 234556778888899999999999999998875 689888888888888888654
No 34
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.87 E-value=0.00014 Score=58.52 Aligned_cols=78 Identities=21% Similarity=0.441 Sum_probs=56.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHCCCCCCHHHHHH
Q 047934 178 AMLDGLCKDGLIQEAMKLFGLMREKGT-IPEVVIYTAVVDGFCKAQ--------KFDDAKRIFRKMQSNGIAPNAFSYNL 248 (344)
Q Consensus 178 tli~~~~k~g~~~~A~~lf~~M~~~g~-~pd~~tyn~LI~ay~k~g--------~~e~A~~vf~~M~~~gi~pd~~tyn~ 248 (344)
..|..|...++......+|..+++.|+ .|++.+||.++.+.++.. ++-+++.+|++|...+++|+..||+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 356666667888888888888888887 788888888888777653 23456667777777777777777777
Q ss_pred HHHHHHH
Q 047934 249 LIQGLYK 255 (344)
Q Consensus 249 LI~ay~k 255 (344)
+|..+.+
T Consensus 110 vl~~Llk 116 (120)
T PF08579_consen 110 VLGSLLK 116 (120)
T ss_pred HHHHHHH
Confidence 7766654
No 35
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=97.87 E-value=0.0031 Score=62.17 Aligned_cols=154 Identities=12% Similarity=0.045 Sum_probs=89.3
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHH--HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHHcCCHHHHHH
Q 047934 154 SEPPQEADEIFKKMKETGLIPNAVAM--LDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYT--AVVDGFCKAQKFDDAKR 229 (344)
Q Consensus 154 sg~~~~A~~lf~~M~~~gi~p~~~tl--i~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn--~LI~ay~k~g~~e~A~~ 229 (344)
.|+++.|++......+..-.|..+-+ ..+..+.|+.+.|.+++.++.+. .|+...+- .....+...|++++|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 56666776666655544322323322 22224566677777776666543 23332222 22445666667777777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC----------------------------------
Q 047934 230 IFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHS---------------------------------- 275 (344)
Q Consensus 230 vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~---------------------------------- 275 (344)
.++.+.+.. +-+......+...|.+.|++++|.+++..+.+.+..
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 766666553 224555666666666667777666666666544322
Q ss_pred -------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCc
Q 047934 276 -------PNVTTFVGLVDGLCRERGVEKAQSVIATLKEKGFL 310 (344)
Q Consensus 276 -------pd~~ty~~lL~a~~~~G~~e~a~~l~~~M~~~Gi~ 310 (344)
.+......+..++...|+.++|.+++.+..+....
T Consensus 254 ~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~ 295 (398)
T PRK10747 254 NQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYD 295 (398)
T ss_pred hCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 23444555667777788888888888888775443
No 36
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=97.85 E-value=0.0015 Score=69.88 Aligned_cols=154 Identities=10% Similarity=-0.036 Sum_probs=90.5
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCC------CHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----------CCCC---HHH
Q 047934 151 EPISEPPQEADEIFKKMKETGLIP------NAVAMLDGLCKDGLIQEAMKLFGLMREKG-----------TIPE---VVI 210 (344)
Q Consensus 151 ~~~sg~~~~A~~lf~~M~~~gi~p------~~~tli~~~~k~g~~~~A~~lf~~M~~~g-----------~~pd---~~t 210 (344)
+...|++++|+.+|+++.+..-.. ....+..++...|++++|.++++.+.+.. -.|+ ...
T Consensus 282 yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a 361 (765)
T PRK10049 282 YLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQG 361 (765)
T ss_pred HHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHH
Confidence 344566777777777665432110 01234556667777777777777666531 0122 123
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHH
Q 047934 211 YTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPN-VTTFVGLVDGLC 289 (344)
Q Consensus 211 yn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd-~~ty~~lL~a~~ 289 (344)
+..+...+...|+.++|+++++++.... +-+...+..+...+...|+.++|++.+++.... .|| ...+......+.
T Consensus 362 ~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l--~Pd~~~l~~~~a~~al 438 (765)
T PRK10049 362 QSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVL--EPRNINLEVEQAWTAL 438 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHH
Confidence 4455566666777777777777765542 224556666667777777777777777766554 244 444445555666
Q ss_pred HcCCHHHHHHHHHHHHHC
Q 047934 290 RERGVEKAQSVIATLKEK 307 (344)
Q Consensus 290 ~~G~~e~a~~l~~~M~~~ 307 (344)
..|++++|..+++.+.+.
T Consensus 439 ~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 439 DLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HhCCHHHHHHHHHHHHHh
Confidence 677777777777777653
No 37
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=97.84 E-value=0.0028 Score=69.31 Aligned_cols=169 Identities=13% Similarity=0.088 Sum_probs=109.3
Q ss_pred CCCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 047934 153 ISEPPQEADEIFKKMKETGLI-PNAVAMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRIF 231 (344)
Q Consensus 153 ~sg~~~~A~~lf~~M~~~gi~-p~~~tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf 231 (344)
..|++++|...|+++....-. +.+..+...+.+.|+.++|.++|+...+.. +.+...+..+...+...|++++|...|
T Consensus 521 ~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~ 599 (987)
T PRK09782 521 QVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDL 599 (987)
T ss_pred HCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 467888888888876543211 112344556777888888888888777653 222333333333444558888888888
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCc
Q 047934 232 RKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSP-NVTTFVGLVDGLCRERGVEKAQSVIATLKEKGFL 310 (344)
Q Consensus 232 ~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~p-d~~ty~~lL~a~~~~G~~e~a~~l~~~M~~~Gi~ 310 (344)
++..+. .|+...|..+-.+|.+.|+.++|+..|++.... .| +...+..+-.++...|+.++|.++++...+. .
T Consensus 600 ~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l--~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l--~ 673 (987)
T PRK09782 600 TRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALEL--EPNNSNYQAALGYALWDSGDIAQSREMLERAHKG--L 673 (987)
T ss_pred HHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--C
Confidence 877764 456777888888888888888888888887665 34 3455566666777888888888888877664 2
Q ss_pred c-cHHHHHHHHhccCCCCh
Q 047934 311 V-NDKAVREFLDKKAPFSS 328 (344)
Q Consensus 311 p-~~~~~~~Ll~~yak~g~ 328 (344)
| +...+..+-..|...|.
T Consensus 674 P~~~~a~~nLA~al~~lGd 692 (987)
T PRK09782 674 PDDPALIRQLAYVNQRLDD 692 (987)
T ss_pred CCCHHHHHHHHHHHHHCCC
Confidence 3 23344444444444444
No 38
>PRK14574 hmsH outer membrane protein; Provisional
Probab=97.82 E-value=0.0018 Score=69.51 Aligned_cols=172 Identities=9% Similarity=0.052 Sum_probs=125.3
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 047934 151 EPISEPPQEADEIFKKMKETGLI--PNAVAMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAK 228 (344)
Q Consensus 151 ~~~sg~~~~A~~lf~~M~~~gi~--p~~~tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~ 228 (344)
.+..|+++.|+..|.+..+..-. |....++..+...|+.++|+.+++..... ........-++...|...|++++|.
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~gdyd~Ai 122 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEKRWDQAL 122 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 45689999999999999875432 22346788888999999999999988721 1223344444466888889999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 047934 229 RIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRERGVEKAQSVIATLKEKG 308 (344)
Q Consensus 229 ~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~~e~a~~l~~~M~~~G 308 (344)
++|+++.+..-. +...+..++..|.+.++.++|++.+++.... .|+...+..++..+...++..+|.+.++++.+..
T Consensus 123 ely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~ 199 (822)
T PRK14574 123 ALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA 199 (822)
T ss_pred HHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC
Confidence 999999887433 4566778899999999999999999998765 4566666444444444566666999999998873
Q ss_pred CcccHHHHHHHHhccCCCC
Q 047934 309 FLVNDKAVREFLDKKAPFS 327 (344)
Q Consensus 309 i~p~~~~~~~Ll~~yak~g 327 (344)
.-+...+..++....+.|
T Consensus 200 -P~n~e~~~~~~~~l~~~~ 217 (822)
T PRK14574 200 -PTSEEVLKNHLEILQRNR 217 (822)
T ss_pred -CCCHHHHHHHHHHHHHcC
Confidence 224555566665555554
No 39
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.81 E-value=0.00014 Score=71.83 Aligned_cols=114 Identities=17% Similarity=0.173 Sum_probs=84.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 047934 178 AMLDGLCKDGLIQEAMKLFGLMREK--GTIPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYK 255 (344)
Q Consensus 178 tli~~~~k~g~~~~A~~lf~~M~~~--g~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k 255 (344)
.++..+....+++++..++..+... ....-..|..++|+.|.+.|..+++..+++.=..-|+=||.+|+|.||+.+.+
T Consensus 71 ~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~fl~ 150 (429)
T PF10037_consen 71 IFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHFLK 150 (429)
T ss_pred HHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHHhh
Confidence 4566666666777777777776654 23333445568888888888888888888777777888888888888888888
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 047934 256 CNKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRE 291 (344)
Q Consensus 256 ~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~ 291 (344)
.|++..|.++..+|...+...+..|+...+.+|.+.
T Consensus 151 ~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 151 KGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred cccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 888888888888887777777777877777777766
No 40
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=97.78 E-value=0.0032 Score=68.91 Aligned_cols=150 Identities=11% Similarity=0.016 Sum_probs=121.5
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCCHHH-H---HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 047934 152 PISEPPQEADEIFKKMKETGLIPNAVA-M---LDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDA 227 (344)
Q Consensus 152 ~~sg~~~~A~~lf~~M~~~gi~p~~~t-l---i~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A 227 (344)
...|++++|.+.|++..+.+ |+... . ...+.+.|++++|...|+...+. .|+...|..+-.++.+.|+.++|
T Consensus 553 l~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA 628 (987)
T PRK09782 553 QAAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAA 628 (987)
T ss_pred HHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHH
Confidence 34789999999999988764 44432 2 22333459999999999988765 46788999999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 047934 228 KRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRERGVEKAQSVIATLKEK 307 (344)
Q Consensus 228 ~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~~e~a~~l~~~M~~~ 307 (344)
+..|++..+.. .-+...++.+-.++...|+.++|+++|++..+.. .-+...+..+-.++...|++++|...++...+.
T Consensus 629 ~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l 706 (987)
T PRK09782 629 VSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYARLVIDD 706 (987)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 99999988863 2245677788889999999999999999987752 225677888999999999999999999998765
No 41
>PRK14574 hmsH outer membrane protein; Provisional
Probab=97.78 E-value=0.0035 Score=67.25 Aligned_cols=154 Identities=12% Similarity=0.136 Sum_probs=123.1
Q ss_pred CCCCHHHHHHHHHHHHHCCC-CCCHH--HHHHHHHHcCCHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHHHcCCH
Q 047934 153 ISEPPQEADEIFKKMKETGL-IPNAV--AMLDGLCKDGLIQEAMKLFGLMREKG-----TIPEVVIYTAVVDGFCKAQKF 224 (344)
Q Consensus 153 ~sg~~~~A~~lf~~M~~~gi-~p~~~--tli~~~~k~g~~~~A~~lf~~M~~~g-----~~pd~~tyn~LI~ay~k~g~~ 224 (344)
.-|++++|++.|+.|...+. .|++. ++-++|...+.+++|..+|....... ..++......|.-+|...+++
T Consensus 304 ~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~ 383 (822)
T PRK14574 304 VRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQL 383 (822)
T ss_pred HhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccH
Confidence 35779999999999998884 57776 79999999999999999999986643 233555578999999999999
Q ss_pred HHHHHHHHHHHHCCC-----------CC--CH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 047934 225 DDAKRIFRKMQSNGI-----------AP--NA-FSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCR 290 (344)
Q Consensus 225 e~A~~vf~~M~~~gi-----------~p--d~-~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~ 290 (344)
++|..+++.+.+.-- .| |= ..+..++..++..|++.+|++.++++... -.-|......+-+.+..
T Consensus 384 ~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~-aP~n~~l~~~~A~v~~~ 462 (822)
T PRK14574 384 DKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSST-APANQNLRIALASIYLA 462 (822)
T ss_pred HHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHh
Confidence 999999999987311 11 11 23456777788999999999999999654 24478888888888889
Q ss_pred cCCHHHHHHHHHHHHHC
Q 047934 291 ERGVEKAQSVIATLKEK 307 (344)
Q Consensus 291 ~G~~e~a~~l~~~M~~~ 307 (344)
.|...+|+++++.....
T Consensus 463 Rg~p~~A~~~~k~a~~l 479 (822)
T PRK14574 463 RDLPRKAEQELKAVESL 479 (822)
T ss_pred cCCHHHHHHHHHHHhhh
Confidence 99999999999665544
No 42
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.77 E-value=0.00065 Score=54.72 Aligned_cols=81 Identities=16% Similarity=0.317 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHcCCCCCHHH
Q 047934 210 IYTAVVDGFCKAQKFDDAKRIFRKMQSNGI-APNAFSYNLLIQGLYKCNK--------LEEAVEYCIEMLEAGHSPNVTT 280 (344)
Q Consensus 210 tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi-~pd~~tyn~LI~ay~k~g~--------~~~A~~lf~~M~~~gv~pd~~t 280 (344)
|-...|.-|...+++...-.+|+.+++.|+ .|++.+|+.++.+-++... +-.++.+++.|...+++|+..|
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 335566777777999999999999999999 8999999999999887543 3356788889998899999999
Q ss_pred HHHHHHHHHH
Q 047934 281 FVGLVDGLCR 290 (344)
Q Consensus 281 y~~lL~a~~~ 290 (344)
|+.+|..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 9999887754
No 43
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=97.76 E-value=0.0046 Score=61.18 Aligned_cols=172 Identities=10% Similarity=0.025 Sum_probs=108.5
Q ss_pred CCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-------------------------
Q 047934 154 SEPPQEADEIFKKMKETGLIPN--AVAMLDGLCKDGLIQEAMKLFGLMREKGTIP------------------------- 206 (344)
Q Consensus 154 sg~~~~A~~lf~~M~~~gi~p~--~~tli~~~~k~g~~~~A~~lf~~M~~~g~~p------------------------- 206 (344)
.|+++.|.+.++.+.+..-.-. ...+...|.+.|++++|.+++..+.+.+...
T Consensus 166 ~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~ 245 (409)
T TIGR00540 166 QNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGI 245 (409)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 6778888888888887642111 1257788888888888888888777665422
Q ss_pred ----------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHH--HHcCCHHHHHHHHH
Q 047934 207 ----------------EVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSY-NLLIQGL--YKCNKLEEAVEYCI 267 (344)
Q Consensus 207 ----------------d~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~ty-n~LI~ay--~k~g~~~~A~~lf~ 267 (344)
+...+-.+...+...|+.++|.+++++..+. .||.... -.++..+ ...++.+.+.+.++
T Consensus 246 ~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e 323 (409)
T TIGR00540 246 DGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIE 323 (409)
T ss_pred HHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHH
Confidence 2333344444555556666666666666554 2222210 0022222 22345555555555
Q ss_pred HHHHcCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCcccHHHHHHHHhccCCCChH
Q 047934 268 EMLEAGHSPNV---TTFVGLVDGLCRERGVEKAQSVIATLKEKGFLVNDKAVREFLDKKAPFSSS 329 (344)
Q Consensus 268 ~M~~~gv~pd~---~ty~~lL~a~~~~G~~e~a~~l~~~M~~~Gi~p~~~~~~~Ll~~yak~g~~ 329 (344)
...+. .|+. ....++-..|.+.|++++|.+.|+........|+...+..+-+.+.+.|+.
T Consensus 324 ~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~ 386 (409)
T TIGR00540 324 KQAKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDK 386 (409)
T ss_pred HHHHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCH
Confidence 54433 3433 344567777889999999999999766666688998888999999888874
No 44
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.76 E-value=0.00064 Score=60.96 Aligned_cols=49 Identities=18% Similarity=0.191 Sum_probs=34.1
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHH
Q 047934 258 KLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRERG-VEKAQSVIATLKE 306 (344)
Q Consensus 258 ~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~-~e~a~~l~~~M~~ 306 (344)
+-+.|++++++|...|+.||..|+..|+..+++.+. +.+..+++--|.+
T Consensus 118 Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWmpk 167 (228)
T PF06239_consen 118 QQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWMPK 167 (228)
T ss_pred HHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 345678888888888888888888888888876664 3344555555544
No 45
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.75 E-value=0.00025 Score=70.17 Aligned_cols=132 Identities=13% Similarity=0.119 Sum_probs=108.9
Q ss_pred HHHHHHH---cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 047934 195 LFGLMRE---KGTIPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQSN--GIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEM 269 (344)
Q Consensus 195 lf~~M~~---~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~--gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M 269 (344)
++..|.+ .+.+........+++.+....++++++.++-+.+.. ....-..|..++|..|.+.|..+++++++..=
T Consensus 50 ~~~~l~~k~~~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~ 129 (429)
T PF10037_consen 50 LYSELDKKFERKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNR 129 (429)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhCh
Confidence 4444443 356678889999999999999999999999998875 23223345579999999999999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCcccHHHHHHHHhccCCC
Q 047934 270 LEAGHSPNVTTFVGLVDGLCRERGVEKAQSVIATLKEKGFLVNDKAVREFLDKKAPF 326 (344)
Q Consensus 270 ~~~gv~pd~~ty~~lL~a~~~~G~~e~a~~l~~~M~~~Gi~p~~~~~~~Ll~~yak~ 326 (344)
...|+-||..||+.||+.+.+.|++..|.++..+|...+.-.+..|+..-+..|.++
T Consensus 130 ~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 130 LQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 999999999999999999999999999999999998877666666666655555555
No 46
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.71 E-value=0.0005 Score=61.60 Aligned_cols=107 Identities=15% Similarity=0.188 Sum_probs=79.7
Q ss_pred CCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH
Q 047934 205 IPEVVIYTAVVDGFCKA-----QKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVT 279 (344)
Q Consensus 205 ~pd~~tyn~LI~ay~k~-----g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ 279 (344)
.-|..+|..+|+.|.+. |.++-....+..|.+-|++-|..+|+.||+.+=+ |.+- -..+|+.|-
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F--------- 112 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEF--------- 112 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHh---------
Confidence 34788888888888755 6677788888888888888888888888887765 3221 122222221
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCcccHHHHHHHHhccCCCChHH
Q 047934 280 TFVGLVDGLCRERGVEKAQSVIATLKEKGFLVNDKAVREFLDKKAPFSSSV 330 (344)
Q Consensus 280 ty~~lL~a~~~~G~~e~a~~l~~~M~~~Gi~p~~~~~~~Ll~~yak~g~~~ 330 (344)
-.|- ..-+-|.++++.|+..|+.||.+++..|++.+++.+...
T Consensus 113 ------~hyp--~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~ 155 (228)
T PF06239_consen 113 ------MHYP--RQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHPM 155 (228)
T ss_pred ------ccCc--HHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHHH
Confidence 1221 245779999999999999999999999999999999865
No 47
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=97.71 E-value=0.003 Score=70.59 Aligned_cols=155 Identities=8% Similarity=0.007 Sum_probs=119.2
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 047934 151 EPISEPPQEADEIFKKMKETGLIPNAVAMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRI 230 (344)
Q Consensus 151 ~~~sg~~~~A~~lf~~M~~~gi~p~~~tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~v 230 (344)
+...|+.++|+++++.-+ .-......+-..+.+.|+.++|++.|+...+.. +-+...+..+...|...|+.++|+++
T Consensus 583 l~~~G~~~eA~~~l~~~p--~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~ 659 (1157)
T PRK11447 583 LRDSGKEAEAEALLRQQP--PSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQ 659 (1157)
T ss_pred HHHCCCHHHHHHHHHhCC--CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 445788999999988321 111123467888899999999999999988763 34788999999999999999999999
Q ss_pred HHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CC---CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 047934 231 FRKMQSNGIAP-NAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGH--SP---NVTTFVGLVDGLCRERGVEKAQSVIATL 304 (344)
Q Consensus 231 f~~M~~~gi~p-d~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv--~p---d~~ty~~lL~a~~~~G~~e~a~~l~~~M 304 (344)
++...+. .| +...+..+-.++.+.|+.++|.++++++....- .| +...+..+...+...|+.++|.+.++..
T Consensus 660 l~~ll~~--~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~A 737 (1157)
T PRK11447 660 LAKLPAT--ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDA 737 (1157)
T ss_pred HHHHhcc--CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9988764 33 455677788889999999999999999887532 22 2245555677788999999999999987
Q ss_pred HH-CCCc
Q 047934 305 KE-KGFL 310 (344)
Q Consensus 305 ~~-~Gi~ 310 (344)
.. .|+.
T Consensus 738 l~~~~~~ 744 (1157)
T PRK11447 738 MVASGIT 744 (1157)
T ss_pred HhhcCCC
Confidence 53 3454
No 48
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=97.66 E-value=0.002 Score=60.83 Aligned_cols=156 Identities=12% Similarity=0.090 Sum_probs=72.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHHcCC
Q 047934 150 NEPISEPPQEADEIFKKMKETGLIPNA--VAMLDGLCKDGLIQEAMKLFGLMREKGTIPE----VVIYTAVVDGFCKAQK 223 (344)
Q Consensus 150 ~~~~sg~~~~A~~lf~~M~~~gi~p~~--~tli~~~~k~g~~~~A~~lf~~M~~~g~~pd----~~tyn~LI~ay~k~g~ 223 (344)
+|-++|-+|.|+.+|..+.+.+....- --|+..|-+..+|++|.++-+.+.+.+-.+. ...|+-|-..+.-..+
T Consensus 116 Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~ 195 (389)
T COG2956 116 DYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSD 195 (389)
T ss_pred HHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhh
Confidence 344455566666666666554432111 1356666666666666666665555433222 1223333333333344
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 047934 224 FDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRERGVEKAQSVIAT 303 (344)
Q Consensus 224 ~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~~e~a~~l~~~ 303 (344)
++.|+.++.+..+..-+ ++..--.+=+.+...|+++.|.+.++...+.+..--..+...|..+|...|+.+++...+..
T Consensus 196 ~d~A~~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~ 274 (389)
T COG2956 196 VDRARELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRR 274 (389)
T ss_pred HHHHHHHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 55555555444433100 11111122233344555555555555555544333344444555555555555555555544
Q ss_pred HHH
Q 047934 304 LKE 306 (344)
Q Consensus 304 M~~ 306 (344)
+.+
T Consensus 275 ~~~ 277 (389)
T COG2956 275 AME 277 (389)
T ss_pred HHH
Confidence 443
No 49
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=97.66 E-value=0.0047 Score=61.10 Aligned_cols=154 Identities=14% Similarity=0.088 Sum_probs=81.9
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHH--HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 047934 154 SEPPQEADEIFKKMKETGLIPNAVAM--LDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRIF 231 (344)
Q Consensus 154 sg~~~~A~~lf~~M~~~gi~p~~~tl--i~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf 231 (344)
.|+++.|.+.+....+..-.|..+.+ -.++.+.|+.+.|.+++....+..-.+.....-+....+...|+++.|...+
T Consensus 97 ~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l 176 (409)
T TIGR00540 97 EGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGV 176 (409)
T ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 56666666666655443322222222 2334445666666666666544321111222233355555666666666666
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC------------------------------------
Q 047934 232 RKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHS------------------------------------ 275 (344)
Q Consensus 232 ~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~------------------------------------ 275 (344)
+.+.+.. +-+...+..+...|.+.|++++|.+++..+.+.++.
T Consensus 177 ~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~ 255 (409)
T TIGR00540 177 DKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQ 255 (409)
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHC
Confidence 6666553 114445556666666666666666666555544322
Q ss_pred C-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 047934 276 P-----NVTTFVGLVDGLCRERGVEKAQSVIATLKEKG 308 (344)
Q Consensus 276 p-----d~~ty~~lL~a~~~~G~~e~a~~l~~~M~~~G 308 (344)
| +...+..+...+...|+.++|.+++++..+..
T Consensus 256 p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~ 293 (409)
T TIGR00540 256 PRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL 293 (409)
T ss_pred CHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC
Confidence 1 44445555555666666666666666666653
No 50
>PRK12370 invasion protein regulator; Provisional
Probab=97.65 E-value=0.0048 Score=63.55 Aligned_cols=168 Identities=13% Similarity=0.015 Sum_probs=117.4
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHH----HHHHHHH---------HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 047934 155 EPPQEADEIFKKMKETGLIPNAV----AMLDGLC---------KDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKA 221 (344)
Q Consensus 155 g~~~~A~~lf~~M~~~gi~p~~~----tli~~~~---------k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~ 221 (344)
+.+++|.++|++..+.+ |+.. .+-.+|. ..++.++|...++...+.. +-+..++..+-.++...
T Consensus 275 ~~~~~A~~~~~~Al~ld--P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~ 351 (553)
T PRK12370 275 YSLQQALKLLTQCVNMS--PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIH 351 (553)
T ss_pred HHHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHc
Confidence 45789999999887653 3322 1222222 2245789999999888763 33678888888888999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHcCCHHHHHHH
Q 047934 222 QKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNV-TTFVGLVDGLCRERGVEKAQSV 300 (344)
Q Consensus 222 g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~-~ty~~lL~a~~~~G~~e~a~~l 300 (344)
|++++|...|++..+.. .-+...|..+-.+|...|++++|...+++..+.. |+. ..+..++..+...|++++|...
T Consensus 352 g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~--P~~~~~~~~~~~~~~~~g~~eeA~~~ 428 (553)
T PRK12370 352 SEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLD--PTRAAAGITKLWITYYHTGIDDAIRL 428 (553)
T ss_pred cCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHhccCHHHHHHH
Confidence 99999999999998863 2246678888899999999999999999988763 432 2333344456678999999999
Q ss_pred HHHHHHCCCcccHHHHHHHHhccCCCCh
Q 047934 301 IATLKEKGFLVNDKAVREFLDKKAPFSS 328 (344)
Q Consensus 301 ~~~M~~~Gi~p~~~~~~~Ll~~yak~g~ 328 (344)
+.++.+..-.-+...+..+-..|...|.
T Consensus 429 ~~~~l~~~~p~~~~~~~~la~~l~~~G~ 456 (553)
T PRK12370 429 GDELRSQHLQDNPILLSMQVMFLSLKGK 456 (553)
T ss_pred HHHHHHhccccCHHHHHHHHHHHHhCCC
Confidence 9988765322123333444444555554
No 51
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=97.65 E-value=0.0051 Score=65.87 Aligned_cols=147 Identities=12% Similarity=0.074 Sum_probs=117.3
Q ss_pred CCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 047934 154 SEPPQEADEIFKKMKETGLIPN--AVAMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRIF 231 (344)
Q Consensus 154 sg~~~~A~~lf~~M~~~gi~p~--~~tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf 231 (344)
.|+.++|+++|.+.....-.+. +..+...+...|++++|.++|+...+. -+.+...+..+..++...|+.++|...+
T Consensus 28 ~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~-~P~~~~a~~~la~~l~~~g~~~eA~~~l 106 (765)
T PRK10049 28 AGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL-EPQNDDYQRGLILTLADAGQYDEALVKA 106 (765)
T ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 6889999999999986332322 346778899999999999999998765 2345677788999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 047934 232 RKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSP-NVTTFVGLVDGLCRERGVEKAQSVIATLK 305 (344)
Q Consensus 232 ~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~p-d~~ty~~lL~a~~~~G~~e~a~~l~~~M~ 305 (344)
++..+.. ..+.. |..+-.++...|+.++|+..+++..+. .| +...+..+..++...|..++|.+.++...
T Consensus 107 ~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~--~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~ 177 (765)
T PRK10049 107 KQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPR--APQTQQYPTEYVQALRNNRLSAPALGAIDDAN 177 (765)
T ss_pred HHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCChHHHHHHHHhCC
Confidence 9998762 23455 888888999999999999999999886 34 45555667777888899998888777443
No 52
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=97.61 E-value=0.0058 Score=55.17 Aligned_cols=157 Identities=14% Similarity=0.062 Sum_probs=111.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CCH-HHHHHHHHHHHHc-
Q 047934 150 NEPISEPPQEADEIFKKMKETGLI-PN----AVAMLDGLCKDGLIQEAMKLFGLMREKGTI-PEV-VIYTAVVDGFCKA- 221 (344)
Q Consensus 150 ~~~~sg~~~~A~~lf~~M~~~gi~-p~----~~tli~~~~k~g~~~~A~~lf~~M~~~g~~-pd~-~tyn~LI~ay~k~- 221 (344)
.++..|++++|...|+++....-. |. +..+-..|.+.|++++|...|+.+.+..-. +.. .++..+-.++...
T Consensus 42 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~ 121 (235)
T TIGR03302 42 EALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQI 121 (235)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhc
Confidence 455688999999999998765321 11 124677888999999999999999875321 111 2344444444443
Q ss_pred -------CCHHHHHHHHHHHHHCCCCCCHHHH-----------------HHHHHHHHHcCCHHHHHHHHHHHHHcC--CC
Q 047934 222 -------QKFDDAKRIFRKMQSNGIAPNAFSY-----------------NLLIQGLYKCNKLEEAVEYCIEMLEAG--HS 275 (344)
Q Consensus 222 -------g~~e~A~~vf~~M~~~gi~pd~~ty-----------------n~LI~ay~k~g~~~~A~~lf~~M~~~g--v~ 275 (344)
|+.++|.+.|+.+...... +...+ -.+-..|.+.|++++|...+++..... -.
T Consensus 122 ~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~ 200 (235)
T TIGR03302 122 DRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTP 200 (235)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCc
Confidence 6789999999998775222 11122 134456788899999999999988752 22
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 047934 276 PNVTTFVGLVDGLCRERGVEKAQSVIATLKEK 307 (344)
Q Consensus 276 pd~~ty~~lL~a~~~~G~~e~a~~l~~~M~~~ 307 (344)
.....+..+..++.+.|+.++|..+++.+...
T Consensus 201 ~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 201 ATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 34678889999999999999999999888764
No 53
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.58 E-value=0.003 Score=62.13 Aligned_cols=121 Identities=21% Similarity=0.227 Sum_probs=101.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 047934 178 AMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCN 257 (344)
Q Consensus 178 tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g 257 (344)
+|+..+...++++.|.++|+++.+.. |++ .-.|...+..+++-.+|.+++.+.... .+-|......-...|.+.+
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcC
Confidence 58888888999999999999998874 554 445788888888889999999888764 2346777777788889999
Q ss_pred CHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 047934 258 KLEEAVEYCIEMLEAGHSPN-VTTFVGLVDGLCRERGVEKAQSVIATLK 305 (344)
Q Consensus 258 ~~~~A~~lf~~M~~~gv~pd-~~ty~~lL~a~~~~G~~e~a~~l~~~M~ 305 (344)
+.+.|+++.+++... .|+ -.+|..|..+|...|+++.|...++.+.
T Consensus 249 ~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 249 KYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 999999999998875 565 4589999999999999999999998775
No 54
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=97.57 E-value=0.0056 Score=57.87 Aligned_cols=157 Identities=12% Similarity=0.102 Sum_probs=87.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHH
Q 047934 180 LDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNA----FSYNLLIQGLYK 255 (344)
Q Consensus 180 i~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~----~tyn~LI~ay~k 255 (344)
-.-|...|-++.|..+|..+.+.+.. -....--|+..|-...+|++|.++-+++.+.+-.+.. .-|.-|-..+..
T Consensus 114 ~~Dym~aGl~DRAE~~f~~L~de~ef-a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~ 192 (389)
T COG2956 114 GRDYMAAGLLDRAEDIFNQLVDEGEF-AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALA 192 (389)
T ss_pred HHHHHHhhhhhHHHHHHHHHhcchhh-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhh
Confidence 33444445555555555444443211 1223344555555555555555555555444222111 122333333334
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHHCCCcccHHHHHHHHhccCCCChHH-HHH
Q 047934 256 CNKLEEAVEYCIEMLEAGHSPNVTTFV-GLVDGLCRERGVEKAQSVIATLKEKGFLVNDKAVREFLDKKAPFSSSV-WEA 333 (344)
Q Consensus 256 ~g~~~~A~~lf~~M~~~gv~pd~~ty~-~lL~a~~~~G~~e~a~~l~~~M~~~Gi~p~~~~~~~Ll~~yak~g~~~-W~a 333 (344)
..+++.|+.++.+-.+.. |+.+--+ .+-+.....|+++.|.+.++...+.+-.--..+...|..+|+..|... |..
T Consensus 193 ~~~~d~A~~~l~kAlqa~--~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~ 270 (389)
T COG2956 193 SSDVDRARELLKKALQAD--KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLN 270 (389)
T ss_pred hhhHHHHHHHHHHHHhhC--ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 455555555555544431 2222222 233445567899999999999998887777889999999999999854 777
Q ss_pred HhcCcc
Q 047934 334 IFGKKT 339 (344)
Q Consensus 334 ll~~~~ 339 (344)
+|.+|.
T Consensus 271 fL~~~~ 276 (389)
T COG2956 271 FLRRAM 276 (389)
T ss_pred HHHHHH
Confidence 776654
No 55
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=97.56 E-value=0.0057 Score=68.41 Aligned_cols=120 Identities=16% Similarity=0.082 Sum_probs=99.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 047934 180 LDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKL 259 (344)
Q Consensus 180 i~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~ 259 (344)
...+...|+.++|.++++. .+.+...+..|-..|.+.|+.++|+..|+...+.. .-+...+..+...|...|+.
T Consensus 580 a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~ 653 (1157)
T PRK11447 580 ANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDL 653 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCH
Confidence 4567888999999998872 34566778889999999999999999999998863 23678899999999999999
Q ss_pred HHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 047934 260 EEAVEYCIEMLEAGHSP-NVTTFVGLVDGLCRERGVEKAQSVIATLKEK 307 (344)
Q Consensus 260 ~~A~~lf~~M~~~gv~p-d~~ty~~lL~a~~~~G~~e~a~~l~~~M~~~ 307 (344)
++|++.++...+. .| +..++..+-.++...|+.++|.++++.+...
T Consensus 654 ~eA~~~l~~ll~~--~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 654 AAARAQLAKLPAT--ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred HHHHHHHHHHhcc--CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 9999999977653 34 4555666777888999999999999998875
No 56
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.53 E-value=0.00033 Score=66.23 Aligned_cols=147 Identities=20% Similarity=0.147 Sum_probs=96.7
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH----HcCCHHH
Q 047934 152 PISEPPQEADEIFKKMKETGLIPNAV-AMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFC----KAQKFDD 226 (344)
Q Consensus 152 ~~sg~~~~A~~lf~~M~~~gi~p~~~-tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~----k~g~~e~ 226 (344)
...|++++|+++...- -..... ..+..|.+.++++.|.+.++.|.+.. .| .+..-|..++. ....+.+
T Consensus 113 ~~~~~~~~AL~~l~~~----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD-~~l~qLa~awv~l~~g~e~~~~ 185 (290)
T PF04733_consen 113 FHEGDYEEALKLLHKG----GSLELLALAVQILLKMNRPDLAEKELKNMQQID--ED-SILTQLAEAWVNLATGGEKYQD 185 (290)
T ss_dssp CCCCHHHHHHCCCTTT----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CC-HHHHHHHHHHHHHHHTTTCCCH
T ss_pred HHcCCHHHHHHHHHcc----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--Cc-HHHHHHHHHHHHHHhCchhHHH
Confidence 3467788888777653 111222 35788888888888888888887653 23 33333444333 3346888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHH
Q 047934 227 AKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRERGV-EKAQSVIATLK 305 (344)
Q Consensus 227 A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~~-e~a~~l~~~M~ 305 (344)
|..+|++|.+. ..++..+.|.+..++...|++++|.+++.+..... .-|..|...++..+...|+. +.+.+++.++.
T Consensus 186 A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~ 263 (290)
T PF04733_consen 186 AFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLSQLK 263 (290)
T ss_dssp HHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCH
T ss_pred HHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 88888887654 56678888888888888888888888888765432 23566777777777777876 66777888777
Q ss_pred HC
Q 047934 306 EK 307 (344)
Q Consensus 306 ~~ 307 (344)
..
T Consensus 264 ~~ 265 (290)
T PF04733_consen 264 QS 265 (290)
T ss_dssp HH
T ss_pred Hh
Confidence 53
No 57
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=97.50 E-value=0.00031 Score=73.48 Aligned_cols=89 Identities=18% Similarity=0.341 Sum_probs=55.4
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 047934 195 LFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGH 274 (344)
Q Consensus 195 lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv 274 (344)
++..|+..|+.|+.+||..||.-||..|+++.|- +|.-|+-+....+...++.++.+...+++.+.+.
T Consensus 12 fla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk----------- 79 (1088)
T KOG4318|consen 12 FLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK----------- 79 (1088)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------
Confidence 4445566666666666666666666666666666 6666666655555666666666666666655554
Q ss_pred CCCHHHHHHHHHHHHHcCCHH
Q 047934 275 SPNVTTFVGLVDGLCRERGVE 295 (344)
Q Consensus 275 ~pd~~ty~~lL~a~~~~G~~e 295 (344)
.|-..||..|+.+|+..||+.
T Consensus 80 ep~aDtyt~Ll~ayr~hGDli 100 (1088)
T KOG4318|consen 80 EPLADTYTNLLKAYRIHGDLI 100 (1088)
T ss_pred CCchhHHHHHHHHHHhccchH
Confidence 555666666666666666543
No 58
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.40 E-value=0.0046 Score=60.88 Aligned_cols=112 Identities=16% Similarity=0.178 Sum_probs=95.3
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 047934 154 SEPPQEADEIFKKMKETGLIPNAV-AMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRIFR 232 (344)
Q Consensus 154 sg~~~~A~~lf~~M~~~gi~p~~~-tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf~ 232 (344)
.++++.|+.+|+++.+.. |+.. .|...+...++..+|.++.++..+. .+-+....+.-...|.+.++.+.|+.+.+
T Consensus 182 t~~~~~ai~lle~L~~~~--pev~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk 258 (395)
T PF09295_consen 182 TQRYDEAIELLEKLRERD--PEVAVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLSKKKYELALEIAK 258 (395)
T ss_pred cccHHHHHHHHHHHHhcC--CcHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 457999999999999887 5555 4677777888999999999988854 34477888888888999999999999999
Q ss_pred HHHHCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 047934 233 KMQSNGIAPNAF-SYNLLIQGLYKCNKLEEAVEYCIEML 270 (344)
Q Consensus 233 ~M~~~gi~pd~~-tyn~LI~ay~k~g~~~~A~~lf~~M~ 270 (344)
++.+. .|+.+ +|..|..+|.+.|+++.|+-.++.|-
T Consensus 259 ~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 259 KAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 99875 56655 99999999999999999999988874
No 59
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.39 E-value=0.02 Score=56.40 Aligned_cols=175 Identities=13% Similarity=0.082 Sum_probs=113.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCHHHHH---HHHHHcCCHHHHHHHHHHHH--------------------------
Q 047934 150 NEPISEPPQEADEIFKKMKETGLIPNAVAML---DGLCKDGLIQEAMKLFGLMR-------------------------- 200 (344)
Q Consensus 150 ~~~~sg~~~~A~~lf~~M~~~gi~p~~~tli---~~~~k~g~~~~A~~lf~~M~-------------------------- 200 (344)
..+.+|++++|.+.+++....+..- ..+|. ..+-+.|++++|++.|-.+-
T Consensus 499 ~~f~ngd~dka~~~ykeal~ndasc-~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqa 577 (840)
T KOG2003|consen 499 IAFANGDLDKAAEFYKEALNNDASC-TEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQA 577 (840)
T ss_pred eeeecCcHHHHHHHHHHHHcCchHH-HHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHH
Confidence 3466899999999999988765431 22222 22445677777777665441
Q ss_pred ------HcC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 047934 201 ------EKG-TIPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAG 273 (344)
Q Consensus 201 ------~~g-~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~g 273 (344)
... ++-|..+...|-+.|-+.|+-..|.+.+-+--+ -+.-+..|.-.|-.-|....-+++|+..|++.. =
T Consensus 578 ie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyr-yfp~nie~iewl~ayyidtqf~ekai~y~ekaa--l 654 (840)
T KOG2003|consen 578 IELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR-YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAA--L 654 (840)
T ss_pred HHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhccc-ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH--h
Confidence 111 233445555555555555555555554432211 123344555556666666677777777777643 3
Q ss_pred CCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHCCCcccHHHHHHHHhccCCCChH
Q 047934 274 HSPNVTTFVGLVDGLC-RERGVEKAQSVIATLKEKGFLVNDKAVREFLDKKAPFSSS 329 (344)
Q Consensus 274 v~pd~~ty~~lL~a~~-~~G~~e~a~~l~~~M~~~Gi~p~~~~~~~Ll~~yak~g~~ 329 (344)
++|+.+-|-.||..|. +.|++.+|.+++....++ +.-|......|++.+...|-.
T Consensus 655 iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl~ 710 (840)
T KOG2003|consen 655 IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGLK 710 (840)
T ss_pred cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccch
Confidence 6899999999888876 689999999999987654 677888888888887777753
No 60
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=97.37 E-value=0.02 Score=55.47 Aligned_cols=173 Identities=12% Similarity=0.085 Sum_probs=101.6
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHHcCCHH
Q 047934 155 EPPQEADEIFKKMKETGLIPNAV--AMLDGLCKDGLIQEAMKLFGLMREKGTIPEV-------VIYTAVVDGFCKAQKFD 225 (344)
Q Consensus 155 g~~~~A~~lf~~M~~~gi~p~~~--tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~-------~tyn~LI~ay~k~g~~e 225 (344)
|+++.|..-.+++.+.+-.+... ....+|.+.|++.++..+...|.+.|.-.|. .+|+.+++-....+..+
T Consensus 167 ~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~ 246 (400)
T COG3071 167 RDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSE 246 (400)
T ss_pred CCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccch
Confidence 34444544444444433222111 3567777777777777777777776654432 34555555444444444
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC------------------------------C
Q 047934 226 DAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGH------------------------------S 275 (344)
Q Consensus 226 ~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv------------------------------~ 275 (344)
.-...|+....+ .+-+...-.+++.-+.++|+.++|.++..+-.+++. .
T Consensus 247 gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~ 325 (400)
T COG3071 247 GLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHP 325 (400)
T ss_pred HHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCC
Confidence 444444444322 222344445566666666666666666555433221 1
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCcccHHHHHHHHhccCCCChHH
Q 047934 276 PNVTTFVGLVDGLCRERGVEKAQSVIATLKEKGFLVNDKAVREFLDKKAPFSSSV 330 (344)
Q Consensus 276 pd~~ty~~lL~a~~~~G~~e~a~~l~~~M~~~Gi~p~~~~~~~Ll~~yak~g~~~ 330 (344)
-+...+.+|-.-|.+.+.+.+|.+.|+...+ ..|+..+|+.+-+.+.+.|...
T Consensus 326 ~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~ 378 (400)
T COG3071 326 EDPLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPE 378 (400)
T ss_pred CChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChH
Confidence 2335577788888888999999999985444 5788888888888888877643
No 61
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.26 E-value=0.044 Score=49.67 Aligned_cols=185 Identities=11% Similarity=0.038 Sum_probs=140.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 047934 150 NEPISEPPQEADEIFKKMKETGLI--PNAVAMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDA 227 (344)
Q Consensus 150 ~~~~sg~~~~A~~lf~~M~~~gi~--p~~~tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A 227 (344)
.|...|++..|.+-+++..+.+-. -.|..+-..|.+.|..+.|.+.|+......- -+-.+.|..=.-+|..|.+++|
T Consensus 44 ~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p-~~GdVLNNYG~FLC~qg~~~eA 122 (250)
T COG3063 44 GYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAP-NNGDVLNNYGAFLCAQGRPEEA 122 (250)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCC-CccchhhhhhHHHHhCCChHHH
Confidence 344578999999999998886522 1345688889999999999999998776532 2456677777778999999999
Q ss_pred HHHHHHHHHCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 047934 228 KRIFRKMQSNGI-APNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRERGVEKAQSVIATLKE 306 (344)
Q Consensus 228 ~~vf~~M~~~gi-~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~~e~a~~l~~~M~~ 306 (344)
.+.|++....-. .--..||..+.-|-.+.|+.+.|.+.|.+-.+..-. ...+...+.....+.|+.-.|+..++....
T Consensus 123 ~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~ 201 (250)
T COG3063 123 MQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPARLYLERYQQ 201 (250)
T ss_pred HHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHHHHHHHHHh
Confidence 999999887521 122468888888889999999999999998876322 345566777888889999999999999887
Q ss_pred CCCcccHHHHHHHHhccCCCChHH----HHHHhcC
Q 047934 307 KGFLVNDKAVREFLDKKAPFSSSV----WEAIFGK 337 (344)
Q Consensus 307 ~Gi~p~~~~~~~Ll~~yak~g~~~----W~all~~ 337 (344)
.+- ++....-..|+.-...|+.. |.+.|-+
T Consensus 202 ~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 202 RGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred ccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 766 77777766676666666543 6665543
No 62
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.26 E-value=0.0082 Score=56.43 Aligned_cols=144 Identities=14% Similarity=0.155 Sum_probs=105.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 047934 176 AVAMLDGLCKDGLIQEAMKLFGLMREKG-TIPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLY 254 (344)
Q Consensus 176 ~~tli~~~~k~g~~~~A~~lf~~M~~~g-~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~ 254 (344)
|..+|..+-+.+..+.|..+|...++.+ +..++++..++|..+ ..++.+.|.+||+...+. +.-+...|...|+.+.
T Consensus 4 ~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~-~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 4 WIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYY-CNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHH-TCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHH
Confidence 6678888888888999999999988653 445566666666533 245667799999998875 5557888999999999
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCcccHHHHHHHHhccC
Q 047934 255 KCNKLEEAVEYCIEMLEAGHSPN---VTTFVGLVDGLCRERGVEKAQSVIATLKEKGFLVNDKAVREFLDKKA 324 (344)
Q Consensus 255 k~g~~~~A~~lf~~M~~~gv~pd---~~ty~~lL~a~~~~G~~e~a~~l~~~M~~~Gi~p~~~~~~~Ll~~ya 324 (344)
+.++.+.|..+|++.... +.++ ...|...|.-=.+.|+++.+.++...+.+. -|+......+++-|.
T Consensus 82 ~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~~ry~ 151 (280)
T PF05843_consen 82 KLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELFSDRYS 151 (280)
T ss_dssp HTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHHHCCT-
T ss_pred HhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHHHHHhh
Confidence 999999999999998765 2222 347888888888999999999999888874 444555666676654
No 63
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=97.24 E-value=0.018 Score=58.35 Aligned_cols=156 Identities=19% Similarity=0.138 Sum_probs=115.4
Q ss_pred CCCCCCHHHHHHHHHHHHH---C--CCCCCHH-----HHHHHHHHcCCHHHHHHHHHHHHHc---CCCC----CHHHHHH
Q 047934 151 EPISEPPQEADEIFKKMKE---T--GLIPNAV-----AMLDGLCKDGLIQEAMKLFGLMREK---GTIP----EVVIYTA 213 (344)
Q Consensus 151 ~~~sg~~~~A~~lf~~M~~---~--gi~p~~~-----tli~~~~k~g~~~~A~~lf~~M~~~---g~~p----d~~tyn~ 213 (344)
|+..|++++|...+++..+ + +..+... .+...|+..+.+++|..++....+. -+.+ -..+++.
T Consensus 293 y~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~n 372 (508)
T KOG1840|consen 293 YYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYAN 372 (508)
T ss_pred HhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHH
Confidence 6778999999888886443 2 1111111 3677888899999999999865432 1222 2468899
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHC----CC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH----HcCC-CCC-HHH
Q 047934 214 VVDGFCKAQKFDDAKRIFRKMQSN----GI---APNAFSYNLLIQGLYKCNKLEEAVEYCIEML----EAGH-SPN-VTT 280 (344)
Q Consensus 214 LI~ay~k~g~~e~A~~vf~~M~~~----gi---~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~----~~gv-~pd-~~t 280 (344)
|=..|-+.|++++|+.+|+..... +- .-....++-|-..|.+.+...+|.++|.+-. ..|. .|+ ..+
T Consensus 373 l~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~ 452 (508)
T KOG1840|consen 373 LAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYT 452 (508)
T ss_pred HHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHH
Confidence 999999999999999999987542 11 1124567788888999999999999988744 3343 233 467
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 047934 281 FVGLVDGLCRERGVEKAQSVIATLKE 306 (344)
Q Consensus 281 y~~lL~a~~~~G~~e~a~~l~~~M~~ 306 (344)
|..|...|...|+++.|.++.+.+..
T Consensus 453 ~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 453 YLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 88999999999999999999998763
No 64
>PRK11189 lipoprotein NlpI; Provisional
Probab=97.22 E-value=0.071 Score=50.36 Aligned_cols=148 Identities=14% Similarity=0.012 Sum_probs=110.4
Q ss_pred CCCHHHHHHHHHHHHHCC-CCCCH-----HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 047934 154 SEPPQEADEIFKKMKETG-LIPNA-----VAMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDA 227 (344)
Q Consensus 154 sg~~~~A~~lf~~M~~~g-i~p~~-----~tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A 227 (344)
++..+.++.-+.++..+. +.|+. .-+-..|...|+.++|...|....+.. +-+...|+.+-..|...|++++|
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 356788888888888643 33332 224446778899999999999887753 34678999999999999999999
Q ss_pred HHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 047934 228 KRIFRKMQSNGIAP-NAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRERGVEKAQSVIATLKE 306 (344)
Q Consensus 228 ~~vf~~M~~~gi~p-d~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~~e~a~~l~~~M~~ 306 (344)
...|+...+. .| +...|..+-.+|...|++++|++.|+...+. .|+..........+...++.++|.+.+.....
T Consensus 118 ~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~ 193 (296)
T PRK11189 118 YEAFDSVLEL--DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYE 193 (296)
T ss_pred HHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 9999999875 34 4678888888899999999999999998765 34433222222234456789999999976543
No 65
>PRK11189 lipoprotein NlpI; Provisional
Probab=97.20 E-value=0.1 Score=49.33 Aligned_cols=165 Identities=12% Similarity=-0.051 Sum_probs=91.2
Q ss_pred CCCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 047934 153 ISEPPQEADEIFKKMKETGLI--PNAVAMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRI 230 (344)
Q Consensus 153 ~sg~~~~A~~lf~~M~~~gi~--p~~~tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~v 230 (344)
..|+.++|...|++..+.+-. .-+..+-..|...|++++|.+.|+...+.. +-+..+|..+-.++...|++++|.+.
T Consensus 76 ~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~ 154 (296)
T PRK11189 76 SLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDD 154 (296)
T ss_pred HCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 356677777777776654311 012345566677777777777777766532 11355666666667777777777777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----------------------------CC------
Q 047934 231 FRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAG-----------------------------HS------ 275 (344)
Q Consensus 231 f~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~g-----------------------------v~------ 275 (344)
|+...+. .|+..........+...++.++|.+.|.+..... +.
T Consensus 155 ~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~ 232 (296)
T PRK11189 155 LLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKLDKEQWGWNIVEFYLGKISEETLMERLKAGATDNTELA 232 (296)
T ss_pred HHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCccccHHHHHHHHccCCCHHHHHHHHHhcCCCcHHHH
Confidence 7776654 2332211111112223455666666664432110 00
Q ss_pred C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCcccHHHHHHHH
Q 047934 276 P-NVTTFVGLVDGLCRERGVEKAQSVIATLKEKGFLVNDKAVREFL 320 (344)
Q Consensus 276 p-d~~ty~~lL~a~~~~G~~e~a~~l~~~M~~~Gi~p~~~~~~~Ll 320 (344)
| ...+|..+-..+...|+.++|...|+.....+..-..+.-.+++
T Consensus 233 ~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~~~~ 278 (296)
T PRK11189 233 ERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHRYALL 278 (296)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHHHHH
Confidence 0 12345556666677888888888888877665443333333333
No 66
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=97.20 E-value=0.028 Score=53.71 Aligned_cols=151 Identities=14% Similarity=0.154 Sum_probs=104.4
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCCHHHHHH---HHHH----cCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCC
Q 047934 152 PISEPPQEADEIFKKMKETGLIPNAVAMLD---GLCK----DGLIQEAMKLFGLMREKGTIPE-VVIYTAVVDGFCKAQK 223 (344)
Q Consensus 152 ~~sg~~~~A~~lf~~M~~~gi~p~~~tli~---~~~k----~g~~~~A~~lf~~M~~~g~~pd-~~tyn~LI~ay~k~g~ 223 (344)
...|++++|.+++++..+.. |+....+. .+.. .+..+.+.+.+.. .....|+ ......+-..+...|+
T Consensus 54 ~~~g~~~~A~~~~~~~l~~~--P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~ 129 (355)
T cd05804 54 WIAGDLPKALALLEQLLDDY--PRDLLALKLHLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQ 129 (355)
T ss_pred HHcCCHHHHHHHHHHHHHHC--CCcHHHHHHhHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCC
Confidence 34688999999999887653 33322211 2333 3444555555443 1122233 3444566678889999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCCH--HHHHHHHHHHHHcCCHHHHHHH
Q 047934 224 FDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGH-SPNV--TTFVGLVDGLCRERGVEKAQSV 300 (344)
Q Consensus 224 ~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv-~pd~--~ty~~lL~a~~~~G~~e~a~~l 300 (344)
+++|+..+++..+.. ..+...+..+-..|...|++++|..++++.....- .++. ..|..+...+...|+.++|..+
T Consensus 130 ~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~ 208 (355)
T cd05804 130 YDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAI 208 (355)
T ss_pred HHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHH
Confidence 999999999998864 33466788888899999999999999998776422 2333 3455677788899999999999
Q ss_pred HHHHHHC
Q 047934 301 IATLKEK 307 (344)
Q Consensus 301 ~~~M~~~ 307 (344)
++.....
T Consensus 209 ~~~~~~~ 215 (355)
T cd05804 209 YDTHIAP 215 (355)
T ss_pred HHHHhcc
Confidence 9998543
No 67
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=97.15 E-value=0.1 Score=50.57 Aligned_cols=161 Identities=11% Similarity=0.107 Sum_probs=102.3
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCHHHH--HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 047934 153 ISEPPQEADEIFKKMKETGLIPNAVAM--LDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRI 230 (344)
Q Consensus 153 ~sg~~~~A~~lf~~M~~~gi~p~~~tl--i~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~v 230 (344)
..|++..|+++..+-.+.+-.|..+-+ ..+--+.|+.+.+-.+..+..+.--.++...+-+.-......|+.+.|+.-
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 368899999998888777777754433 344445677777777777766553334455555555555555666666555
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC------------------------------------
Q 047934 231 FRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGH------------------------------------ 274 (344)
Q Consensus 231 f~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv------------------------------------ 274 (344)
.+++.+.+ ............+|.+.|.+.....+...|.+.|+
T Consensus 176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 55555443 22444555556666666666555555555544332
Q ss_pred -----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCcccHH
Q 047934 275 -----SPNVTTFVGLVDGLCRERGVEKAQSVIATLKEKGFLVNDK 314 (344)
Q Consensus 275 -----~pd~~ty~~lL~a~~~~G~~e~a~~l~~~M~~~Gi~p~~~ 314 (344)
+-+...-.+++.-+..+|+.++|.++..+-.++++.++..
T Consensus 255 ~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~ 299 (400)
T COG3071 255 QPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC 299 (400)
T ss_pred ccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH
Confidence 2334445667777788899999999999998888888743
No 68
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.13 E-value=0.015 Score=42.12 Aligned_cols=90 Identities=23% Similarity=0.228 Sum_probs=43.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 047934 214 VVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRERG 293 (344)
Q Consensus 214 LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~ 293 (344)
+...+...|++++|..+|+...+.. ..+...+..+..+|...+++++|.++|+...... ..+..++..+...+...|+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 83 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLGK 83 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHHh
Confidence 3444444555555555555554431 1122444455555555555555555555544432 1122344445555555555
Q ss_pred HHHHHHHHHHHH
Q 047934 294 VEKAQSVIATLK 305 (344)
Q Consensus 294 ~e~a~~l~~~M~ 305 (344)
.++|...+....
T Consensus 84 ~~~a~~~~~~~~ 95 (100)
T cd00189 84 YEEALEAYEKAL 95 (100)
T ss_pred HHHHHHHHHHHH
Confidence 555555555443
No 69
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.11 E-value=0.023 Score=46.35 Aligned_cols=91 Identities=15% Similarity=0.157 Sum_probs=50.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 047934 179 MLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNK 258 (344)
Q Consensus 179 li~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~ 258 (344)
+...+.+.|+.++|.+.|+.....+ +.+...+..+-..|.+.|++++|..+|+...+.. ..+...|..+-..|...|+
T Consensus 23 ~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~ 100 (135)
T TIGR02552 23 LAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLALGE 100 (135)
T ss_pred HHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHcCC
Confidence 3444555666666666666555432 2245555555666666666666666666554442 2234445555555666666
Q ss_pred HHHHHHHHHHHHH
Q 047934 259 LEEAVEYCIEMLE 271 (344)
Q Consensus 259 ~~~A~~lf~~M~~ 271 (344)
.++|...|+...+
T Consensus 101 ~~~A~~~~~~al~ 113 (135)
T TIGR02552 101 PESALKALDLAIE 113 (135)
T ss_pred HHHHHHHHHHHHH
Confidence 6666666655554
No 70
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.06 E-value=0.021 Score=46.63 Aligned_cols=105 Identities=12% Similarity=0.090 Sum_probs=85.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 047934 207 EVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVD 286 (344)
Q Consensus 207 d~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~ 286 (344)
+......+...+...|++++|...|+.+...+ ..+...|..+-.+|.+.|++++|..++++..... ..+..++..+-.
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~ 93 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAE 93 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHH
Confidence 34556677788889999999999999988764 3377888899999999999999999999877654 445677777788
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCcccHHH
Q 047934 287 GLCRERGVEKAQSVIATLKEKGFLVNDKA 315 (344)
Q Consensus 287 a~~~~G~~e~a~~l~~~M~~~Gi~p~~~~ 315 (344)
.|...|+.++|...++...+.. |+...
T Consensus 94 ~~~~~g~~~~A~~~~~~al~~~--p~~~~ 120 (135)
T TIGR02552 94 CLLALGEPESALKALDLAIEIC--GENPE 120 (135)
T ss_pred HHHHcCCHHHHHHHHHHHHHhc--cccch
Confidence 8899999999999999888753 44443
No 71
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.04 E-value=0.036 Score=56.68 Aligned_cols=118 Identities=17% Similarity=0.132 Sum_probs=86.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHCC-CCCC-HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 047934 150 NEPISEPPQEADEIFKKMKETG-LIPN-AVAMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDA 227 (344)
Q Consensus 150 ~~~~sg~~~~A~~lf~~M~~~g-i~p~-~~tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A 227 (344)
-||..|++|-|+.-+++..+.. -.|+ .+-|-.++-..|++.+|.+.|+...... ..-....+.|-..|...|.+++|
T Consensus 295 iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLgni~~E~~~~e~A 373 (966)
T KOG4626|consen 295 IYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLGNIYREQGKIEEA 373 (966)
T ss_pred EEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhccchHH
Confidence 3456899999999999887653 1222 2358888888899999999998876642 22456777888888888888888
Q ss_pred HHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 047934 228 KRIFRKMQSNGIAPN-AFSYNLLIQGLYKCNKLEEAVEYCIEML 270 (344)
Q Consensus 228 ~~vf~~M~~~gi~pd-~~tyn~LI~ay~k~g~~~~A~~lf~~M~ 270 (344)
..+|....+- -|. ...+|.|-..|-+.|++++|+..+.+..
T Consensus 374 ~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal 415 (966)
T KOG4626|consen 374 TRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL 415 (966)
T ss_pred HHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH
Confidence 8888776653 222 3456777777888888888887777654
No 72
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.02 E-value=0.021 Score=41.43 Aligned_cols=94 Identities=24% Similarity=0.238 Sum_probs=74.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 047934 177 VAMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKC 256 (344)
Q Consensus 177 ~tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~ 256 (344)
..+...+...|++++|..+|+...+.. +.+...+..+-..+...+++++|.+.|+...... ..+..+|..+...+...
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHH
Confidence 345667778899999999999887653 2344778888888899999999999999887754 22446888888899999
Q ss_pred CCHHHHHHHHHHHHHc
Q 047934 257 NKLEEAVEYCIEMLEA 272 (344)
Q Consensus 257 g~~~~A~~lf~~M~~~ 272 (344)
|+.++|.+.+.+....
T Consensus 82 ~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 82 GKYEEALEAYEKALEL 97 (100)
T ss_pred HhHHHHHHHHHHHHcc
Confidence 9999999998877643
No 73
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=96.99 E-value=0.047 Score=45.94 Aligned_cols=93 Identities=11% Similarity=-0.071 Sum_probs=69.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 047934 178 AMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCN 257 (344)
Q Consensus 178 tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g 257 (344)
..-..+.+.|++++|...|....... +.+..+|..+-.++...|++++|...|+...+.. ..+...|..+-.++.+.|
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcC
Confidence 45566677888888888888776653 3367777788888888888888888888887653 236677777777888888
Q ss_pred CHHHHHHHHHHHHHc
Q 047934 258 KLEEAVEYCIEMLEA 272 (344)
Q Consensus 258 ~~~~A~~lf~~M~~~ 272 (344)
+.++|...|+.....
T Consensus 107 ~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 107 EPGLAREAFQTAIKM 121 (144)
T ss_pred CHHHHHHHHHHHHHh
Confidence 888888888877664
No 74
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=96.99 E-value=0.025 Score=57.80 Aligned_cols=174 Identities=13% Similarity=0.009 Sum_probs=111.3
Q ss_pred cCCCCCC-CCCHHHHHHHHHHHHHCCCCCCHH-HH-HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH---HHHHHHH
Q 047934 147 PNRNEPI-SEPPQEADEIFKKMKETGLIPNAV-AM-LDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTA---VVDGFCK 220 (344)
Q Consensus 147 ~~~~~~~-sg~~~~A~~lf~~M~~~gi~p~~~-tl-i~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~---LI~ay~k 220 (344)
+..+||. .++.+.|++-|++..+-+-.-.+. || =.-++....+|.|+..|..... .|...||+ |-..|.|
T Consensus 426 a~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~----~~~rhYnAwYGlG~vy~K 501 (638)
T KOG1126|consen 426 ALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG----VDPRHYNAWYGLGTVYLK 501 (638)
T ss_pred HhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc----CCchhhHHHHhhhhheec
Confidence 4556666 778999999999887655322232 33 3345556678888888876543 46667766 4456778
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 047934 221 AQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRERGVEKAQSV 300 (344)
Q Consensus 221 ~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~~e~a~~l 300 (344)
.++++.|+--|++..+-+ .-+.+....+-..+-+.|+.|+|+.++++.....-+ |..+---....+...++.++|.+.
T Consensus 502 qek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~~~il~~~~~~~eal~~ 579 (638)
T KOG1126|consen 502 QEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHRASILFSLGRYVEALQE 579 (638)
T ss_pred cchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHHHHHHHhhcchHHHHHH
Confidence 888888888888766542 224555666666777888888888888887654322 233322234444556788888888
Q ss_pred HHHHHHCCCcccH-HHHHHHHhccCCCCh
Q 047934 301 IATLKEKGFLVND-KAVREFLDKKAPFSS 328 (344)
Q Consensus 301 ~~~M~~~Gi~p~~-~~~~~Ll~~yak~g~ 328 (344)
++++++. .|+. .++..+-..|-+.|.
T Consensus 580 LEeLk~~--vP~es~v~~llgki~k~~~~ 606 (638)
T KOG1126|consen 580 LEELKEL--VPQESSVFALLGKIYKRLGN 606 (638)
T ss_pred HHHHHHh--CcchHHHHHHHHHHHHHHcc
Confidence 8888764 4443 444444455555554
No 75
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=96.97 E-value=0.0037 Score=59.14 Aligned_cols=130 Identities=17% Similarity=0.138 Sum_probs=93.7
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cC
Q 047934 182 GLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYK----CN 257 (344)
Q Consensus 182 ~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k----~g 257 (344)
.+...|++++|+++++.- -+.......+..|.+.++++.|.+.++.|.+.. .| .+-..|..++.. ..
T Consensus 111 i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD-~~l~qLa~awv~l~~g~e 181 (290)
T PF04733_consen 111 ILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID--ED-SILTQLAEAWVNLATGGE 181 (290)
T ss_dssp HHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CC-HHHHHHHHHHHHHHHTTT
T ss_pred HHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--Cc-HHHHHHHHHHHHHHhCch
Confidence 344579999999988642 467888889999999999999999999998753 34 334444444443 34
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCcccHHHHHHHHhc
Q 047934 258 KLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRERGVEKAQSVIATLKEKGFLVNDKAVREFLDK 322 (344)
Q Consensus 258 ~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~~e~a~~l~~~M~~~Gi~p~~~~~~~Ll~~ 322 (344)
.+.+|..+|+++.+. ..++..+.+.+..++...|++++|.+++.+.....-. +..+...++..
T Consensus 182 ~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~~d~LaNliv~ 244 (290)
T PF04733_consen 182 KYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-DPDTLANLIVC 244 (290)
T ss_dssp CCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CHHHHHHHHHH
Confidence 689999999998664 5678899999999999999999999999997654322 33344444443
No 76
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=96.97 E-value=0.031 Score=46.99 Aligned_cols=96 Identities=9% Similarity=-0.115 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 047934 210 IYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLC 289 (344)
Q Consensus 210 tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~ 289 (344)
.+..+-..+...|++++|...|+...... ..+...|..+-.++.+.|++++|...|++..... .-+..++..+-.++.
T Consensus 26 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~ 103 (144)
T PRK15359 26 TVYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLK 103 (144)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHH
Confidence 35556677889999999999999988763 2377889999999999999999999999998753 346788888888999
Q ss_pred HcCCHHHHHHHHHHHHHC
Q 047934 290 RERGVEKAQSVIATLKEK 307 (344)
Q Consensus 290 ~~G~~e~a~~l~~~M~~~ 307 (344)
..|+.++|.+.+....+.
T Consensus 104 ~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 104 MMGEPGLAREAFQTAIKM 121 (144)
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 999999999999998775
No 77
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=96.97 E-value=0.055 Score=48.16 Aligned_cols=118 Identities=13% Similarity=0.088 Sum_probs=66.6
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HHcCC--HHHHH
Q 047934 187 GLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGL-YKCNK--LEEAV 263 (344)
Q Consensus 187 g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay-~k~g~--~~~A~ 263 (344)
++.+++...+....+. -+.|...|..|-..|...|++++|...|++..+..- -+...|..+-.++ ...|+ .++|.
T Consensus 53 ~~~~~~i~~l~~~L~~-~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P-~~~~~~~~lA~aL~~~~g~~~~~~A~ 130 (198)
T PRK10370 53 QTPEAQLQALQDKIRA-NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRG-ENAELYAALATVLYYQAGQHMTPQTR 130 (198)
T ss_pred hhHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence 3344444444443332 133566666666666667777777777766655431 1455555555543 45555 36666
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 047934 264 EYCIEMLEAGHSPNVTTFVGLVDGLCRERGVEKAQSVIATLKEK 307 (344)
Q Consensus 264 ~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~~e~a~~l~~~M~~~ 307 (344)
+++++..+..-. +..++..+-..+...|++++|...++.+.+.
T Consensus 131 ~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 131 EMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 666666654321 4455555666666667777777777666554
No 78
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=96.96 E-value=0.043 Score=50.44 Aligned_cols=179 Identities=12% Similarity=0.062 Sum_probs=130.3
Q ss_pred chhHHhhhhhcCCCCCCCCCcccccchhcccccCCCCCCCCCHHHHHHHHHHHHHCCCCCCH-H--HHHHHHHHcCCHHH
Q 047934 115 DENFLDQFKLAIDKKPGNPQQNESLGQRQEQKPNRNEPISEPPQEADEIFKKMKETGLIPNA-V--AMLDGLCKDGLIQE 191 (344)
Q Consensus 115 ~h~~~~k~gl~~~~~v~~~l~~~~~~~~~y~~~~~~~~~sg~~~~A~~lf~~M~~~gi~p~~-~--tli~~~~k~g~~~~ 191 (344)
.++.+...+-.....++...+ .++...++..|+-+.+..+........-+ +. . .......+.|++.+
T Consensus 49 ~~~a~~al~~~~~~~p~d~~i---------~~~a~a~~~~G~a~~~l~~~~~~~~~~~~-d~~ll~~~gk~~~~~g~~~~ 118 (257)
T COG5010 49 TQGAAAALGAAVLRNPEDLSI---------AKLATALYLRGDADSSLAVLQKSAIAYPK-DRELLAAQGKNQIRNGNFGE 118 (257)
T ss_pred hhHHHHHHHHHHhcCcchHHH---------HHHHHHHHhcccccchHHHHhhhhccCcc-cHHHHHHHHHHHHHhcchHH
Confidence 344555555554444433333 34455677788888887777765443222 21 1 25677778899999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 047934 192 AMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLE 271 (344)
Q Consensus 192 A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~ 271 (344)
|...|.+...- -++|..+|+.+=-+|.+.|+.++|+.-|.+..+.-. -+...+|.|--.|.-.|+.+.|..++..-..
T Consensus 119 A~~~~rkA~~l-~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~-~~p~~~nNlgms~~L~gd~~~A~~lll~a~l 196 (257)
T COG5010 119 AVSVLRKAARL-APTDWEAWNLLGAALDQLGRFDEARRAYRQALELAP-NEPSIANNLGMSLLLRGDLEDAETLLLPAYL 196 (257)
T ss_pred HHHHHHHHhcc-CCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhcc-CCchhhhhHHHHHHHcCCHHHHHHHHHHHHh
Confidence 99999987653 567999999999999999999999999999887532 2556778888888889999999999999887
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 047934 272 AGHSPNVTTFVGLVDGLCRERGVEKAQSVIATLKE 306 (344)
Q Consensus 272 ~gv~pd~~ty~~lL~a~~~~G~~e~a~~l~~~M~~ 306 (344)
.+.. |...-..+...-...|++++|+.+...-..
T Consensus 197 ~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~~~e~~ 230 (257)
T COG5010 197 SPAA-DSRVRQNLALVVGLQGDFREAEDIAVQELL 230 (257)
T ss_pred CCCC-chHHHHHHHHHHhhcCChHHHHhhcccccc
Confidence 6543 455556677777889999999988775443
No 79
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=96.95 E-value=0.078 Score=44.39 Aligned_cols=116 Identities=13% Similarity=0.077 Sum_probs=79.1
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHH---HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHHcCCH
Q 047934 185 KDGLIQEAMKLFGLMREKGTIPEVVIY---TAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNA--FSYNLLIQGLYKCNKL 259 (344)
Q Consensus 185 k~g~~~~A~~lf~~M~~~g~~pd~~ty---n~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~--~tyn~LI~ay~k~g~~ 259 (344)
..++...+...++.+.+..- -+.... =.+-..+...|++++|...|+........++. ...-.|...+...|++
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~-~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~ 101 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYP-SSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQY 101 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCC-CChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 47778888888888877632 222222 22346677889999999999998887533322 2334466777888999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 047934 260 EEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRERGVEKAQSVIAT 303 (344)
Q Consensus 260 ~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~~e~a~~l~~~ 303 (344)
++|+..++...... .....+...-+.|.+.|+.++|...|+.
T Consensus 102 d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 102 DEALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999886643332 2344566677778889999999888875
No 80
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.94 E-value=0.065 Score=53.05 Aligned_cols=156 Identities=13% Similarity=0.053 Sum_probs=128.6
Q ss_pred CCCCCC-CCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 047934 148 NRNEPI-SEPPQEADEIFKKMKETG--LIPNAVAMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKF 224 (344)
Q Consensus 148 ~~~~~~-sg~~~~A~~lf~~M~~~g--i~p~~~tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~ 224 (344)
+.|||. .++.++|...|++...-+ ...-|+-|=.-|........|.+-++...+- .+.|-..|=.|=.+|.-.+..
T Consensus 336 IaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi-~p~DyRAWYGLGQaYeim~Mh 414 (559)
T KOG1155|consen 336 IANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDI-NPRDYRAWYGLGQAYEIMKMH 414 (559)
T ss_pred ehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhc-CchhHHHHhhhhHHHHHhcch
Confidence 456666 568999999999988654 2223556778899999999999999988765 344788888999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 047934 225 DDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRERGVEKAQSVIATL 304 (344)
Q Consensus 225 e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~~e~a~~l~~~M 304 (344)
.-|+-.|++...-. +-|...|.+|=++|.+.++.++|.+.|......|-. +...+..|-..|-+.++.++|.+.+..-
T Consensus 415 ~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt-e~~~l~~LakLye~l~d~~eAa~~yek~ 492 (559)
T KOG1155|consen 415 FYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT-EGSALVRLAKLYEELKDLNEAAQYYEKY 492 (559)
T ss_pred HHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-chHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 99999999887642 347889999999999999999999999998877622 5578889999999999999998888865
Q ss_pred HH
Q 047934 305 KE 306 (344)
Q Consensus 305 ~~ 306 (344)
++
T Consensus 493 v~ 494 (559)
T KOG1155|consen 493 VE 494 (559)
T ss_pred HH
Confidence 54
No 81
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.93 E-value=0.069 Score=49.44 Aligned_cols=121 Identities=23% Similarity=0.193 Sum_probs=92.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----
Q 047934 180 LDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYK---- 255 (344)
Q Consensus 180 i~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k---- 255 (344)
...|++.|++++|++..+... ..+....| +..+.+..+++.|++.+++|.+-. +..|.+-|-.++.+
T Consensus 115 a~i~~~~~~~deAl~~~~~~~----~lE~~Al~--VqI~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~g 185 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGE----NLEAAALN--VQILLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATG 185 (299)
T ss_pred hHHhhcCCChHHHHHHHhccc----hHHHHHHH--HHHHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhcc
Confidence 456888999999999887621 12333333 333467778999999999998753 55677766666654
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCc
Q 047934 256 CNKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRERGVEKAQSVIATLKEKGFL 310 (344)
Q Consensus 256 ~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~~e~a~~l~~~M~~~Gi~ 310 (344)
.+.+.+|.-+|++|-++ ..|+..+.+....+|...|++++|..++++...+.-.
T Consensus 186 gek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~ 239 (299)
T KOG3081|consen 186 GEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK 239 (299)
T ss_pred chhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC
Confidence 45688999999999764 5789999999999999999999999999999877544
No 82
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=96.89 E-value=0.061 Score=59.36 Aligned_cols=169 Identities=15% Similarity=0.113 Sum_probs=108.9
Q ss_pred CCCHHHHHHHHHHHHHC-CCC------CCHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Q 047934 154 SEPPQEADEIFKKMKET-GLI------PNAVAMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDD 226 (344)
Q Consensus 154 sg~~~~A~~lf~~M~~~-gi~------p~~~tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~ 226 (344)
-++++.|++++++.... +.. --|.++++.-...|.-+...++|++..+.. ---.+|..|...|.+.+.+++
T Consensus 1471 lsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~~L~~iy~k~ek~~~ 1548 (1710)
T KOG1070|consen 1471 LSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHLKLLGIYEKSEKNDE 1548 (1710)
T ss_pred hhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHHHHHHHHHHhhcchh
Confidence 46788999998876642 111 026688888888888888889998887752 124567889999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 047934 227 AKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPN---VTTFVGLVDGLCRERGVEKAQSVIAT 303 (344)
Q Consensus 227 A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd---~~ty~~lL~a~~~~G~~e~a~~l~~~ 303 (344)
|-++|+.|.++ +.-....|...++.+.+..+.++|.+++.+.... -|- .....-....-.+.|+.++++.+|+.
T Consensus 1549 A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEg 1625 (1710)
T KOG1070|consen 1549 ADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQLEFKYGDAERGRTLFEG 1625 (1710)
T ss_pred HHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHHHhhcCCchhhHHHHHH
Confidence 99999999775 2246778888888888888888888877765432 111 11111122222245566666666655
Q ss_pred HHHCCCcccHHHHHHHHhccCCCCh
Q 047934 304 LKEKGFLVNDKAVREFLDKKAPFSS 328 (344)
Q Consensus 304 M~~~Gi~p~~~~~~~Ll~~yak~g~ 328 (344)
+...-=+ -...|+.++++=.+.|+
T Consensus 1626 ll~ayPK-RtDlW~VYid~eik~~~ 1649 (1710)
T KOG1070|consen 1626 LLSAYPK-RTDLWSVYIDMEIKHGD 1649 (1710)
T ss_pred HHhhCcc-chhHHHHHHHHHHccCC
Confidence 5543211 12345555555555554
No 83
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=96.87 E-value=0.057 Score=57.09 Aligned_cols=125 Identities=14% Similarity=0.180 Sum_probs=99.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 047934 179 MLDGLCKDGLIQEAMKLFGLMREKGTIP-EVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCN 257 (344)
Q Consensus 179 li~~~~k~g~~~~A~~lf~~M~~~g~~p-d~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g 257 (344)
|-....+.|+.++|..+++...+. .| +....-.+...+.+.+++++|+...++....... +......+-.++.+.|
T Consensus 92 La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~a~~l~~~g 168 (694)
T PRK15179 92 VARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLEAKSWDEIG 168 (694)
T ss_pred HHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHHhc
Confidence 455566788999999999887764 44 4566777888889999999999999998876322 4556667777888899
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 047934 258 KLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRERGVEKAQSVIATLKEK 307 (344)
Q Consensus 258 ~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~~e~a~~l~~~M~~~ 307 (344)
+.++|.++|++.... ..-+..++..+-.++...|+.++|...|+...+.
T Consensus 169 ~~~~A~~~y~~~~~~-~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 169 QSEQADACFERLSRQ-HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred chHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999873 2334788888888889999999999999987654
No 84
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.86 E-value=0.014 Score=55.42 Aligned_cols=155 Identities=11% Similarity=0.049 Sum_probs=104.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 047934 150 NEPISEPPQEADEIFKKMKETGLIPNAVA-MLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAK 228 (344)
Q Consensus 150 ~~~~sg~~~~A~~lf~~M~~~gi~p~~~t-li~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~ 228 (344)
.|+.-|.+.+|.+-|..-.+.--.|+... |-.+|.+...++.|+.+|.+-.+. ++-|+....-+-+.+-..+..++|.
T Consensus 232 CylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam~~~~~a~ 310 (478)
T KOG1129|consen 232 CYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAMEQQEDAL 310 (478)
T ss_pred HHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHHHhHHHHH
Confidence 34446788888888887666554555443 567788888888888888776553 3334433455666667777788888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 047934 229 RIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRERGVEKAQSVIATLKEK 307 (344)
Q Consensus 229 ~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~~e~a~~l~~~M~~~ 307 (344)
++++...+.. ..++....++-.+|.-.++.+-|+..++++...|+. +...|+.+--+|.-.+.++.+..-|......
T Consensus 311 ~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~RAlst 387 (478)
T KOG1129|consen 311 QLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALST 387 (478)
T ss_pred HHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhh
Confidence 8888776642 224455566666777778888888888888877765 5666776766777777777776666655443
No 85
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=96.75 E-value=0.025 Score=57.82 Aligned_cols=126 Identities=20% Similarity=0.109 Sum_probs=88.4
Q ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH---H
Q 047934 175 NAVAMLDGLCKDGLIQEAMKLFGLMREKGTIP-EVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLL---I 250 (344)
Q Consensus 175 ~~~tli~~~~k~g~~~~A~~lf~~M~~~g~~p-d~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~L---I 250 (344)
+|.++=+.|+..++.+.|++.|+...+. .| .+++|+-+=.-+.-...+|.|...|+..... |...||++ -
T Consensus 423 sWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~----~~rhYnAwYGlG 496 (638)
T KOG1126|consen 423 SWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV----DPRHYNAWYGLG 496 (638)
T ss_pred HHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC----CchhhHHHHhhh
Confidence 5777778888888888888888766553 33 5677777777777777888888888765543 66666653 4
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 047934 251 QGLYKCNKLEEAVEYCIEMLEAGHSP-NVTTFVGLVDGLCRERGVEKAQSVIATLKEKG 308 (344)
Q Consensus 251 ~ay~k~g~~~~A~~lf~~M~~~gv~p-d~~ty~~lL~a~~~~G~~e~a~~l~~~M~~~G 308 (344)
..|.|.++++.|+-.|++..+- -| +.+....+-..+-+.|+.|+|.+++++.....
T Consensus 497 ~vy~Kqek~e~Ae~~fqkA~~I--NP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld 553 (638)
T KOG1126|consen 497 TVYLKQEKLEFAEFHFQKAVEI--NPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD 553 (638)
T ss_pred hheeccchhhHHHHHHHhhhcC--CccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC
Confidence 4567788888888777765543 33 45555666666677788888888888776554
No 86
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=96.74 E-value=0.14 Score=50.99 Aligned_cols=108 Identities=18% Similarity=0.156 Sum_probs=53.9
Q ss_pred CCCHHHHHHHHHHHHHCCCCCC--H--HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCCHHHHH
Q 047934 154 SEPPQEADEIFKKMKETGLIPN--A--VAMLDGLCKDGLIQEAMKLFGLMREKGTIPE-VVIYTAVVDGFCKAQKFDDAK 228 (344)
Q Consensus 154 sg~~~~A~~lf~~M~~~gi~p~--~--~tli~~~~k~g~~~~A~~lf~~M~~~g~~pd-~~tyn~LI~ay~k~g~~e~A~ 228 (344)
.|++++|+..++.+... .|+ | ......+.+.++.++|.+.++.+... .|+ ....-.+-.+|.+.|+..+|.
T Consensus 319 ~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai 394 (484)
T COG4783 319 AGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAI 394 (484)
T ss_pred hcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHH
Confidence 45555555555554432 111 1 13455555555555555555555543 233 333444445555555555555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 047934 229 RIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYC 266 (344)
Q Consensus 229 ~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf 266 (344)
.+++...... +-|...|..|-.+|...|+..++..-.
T Consensus 395 ~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~ 431 (484)
T COG4783 395 RILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLAR 431 (484)
T ss_pred HHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHH
Confidence 5555554432 224555555555555555555554433
No 87
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.72 E-value=0.09 Score=51.97 Aligned_cols=111 Identities=14% Similarity=0.084 Sum_probs=91.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-cC
Q 047934 179 MLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYK-CN 257 (344)
Q Consensus 179 li~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k-~g 257 (344)
|-..|-+.|+-.+|++.+-+--+ -++.+..|..-|-.-|....-++++...|++..- +.|+..-|..||..|.+ .|
T Consensus 598 l~dlydqegdksqafq~~ydsyr-yfp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsg 674 (840)
T KOG2003|consen 598 LADLYDQEGDKSQAFQCHYDSYR-YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSG 674 (840)
T ss_pred HHHHhhcccchhhhhhhhhhccc-ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcc
Confidence 45566677888888887755333 3677899999999999999999999999987543 68999999999988875 79
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 047934 258 KLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRERG 293 (344)
Q Consensus 258 ~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~ 293 (344)
++..|++++.....+ +.-|.....-|++.|...|.
T Consensus 675 nyqka~d~yk~~hrk-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 675 NYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred cHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence 999999999987654 66688888899999988884
No 88
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=96.71 E-value=0.072 Score=41.87 Aligned_cols=93 Identities=14% Similarity=0.034 Sum_probs=39.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHH
Q 047934 180 LDGLCKDGLIQEAMKLFGLMREKGT--IPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIA--PNAFSYNLLIQGLYK 255 (344)
Q Consensus 180 i~~~~k~g~~~~A~~lf~~M~~~g~--~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~--pd~~tyn~LI~ay~k 255 (344)
...+.+.|++++|.+.|..+.+..- ......+-.+..++.+.|++++|...|+.+....-. .....+..+..++.+
T Consensus 9 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 88 (119)
T TIGR02795 9 ALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQE 88 (119)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHH
Confidence 3344444555555555554443210 011223333444444555555555555544432100 112334444444444
Q ss_pred cCCHHHHHHHHHHHHHc
Q 047934 256 CNKLEEAVEYCIEMLEA 272 (344)
Q Consensus 256 ~g~~~~A~~lf~~M~~~ 272 (344)
.|+.++|.+.++++.+.
T Consensus 89 ~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 89 LGDKEKAKATLQQVIKR 105 (119)
T ss_pred hCChHHHHHHHHHHHHH
Confidence 45555555555444443
No 89
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.70 E-value=0.074 Score=49.22 Aligned_cols=148 Identities=20% Similarity=0.133 Sum_probs=106.8
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH----HcCCHH
Q 047934 151 EPISEPPQEADEIFKKMKETGLIPNAVAM-LDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFC----KAQKFD 225 (344)
Q Consensus 151 ~~~sg~~~~A~~lf~~M~~~gi~p~~~tl-i~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~----k~g~~e 225 (344)
+...|++++|++.... +..-+..+| +..+.+..+++.|.+.++.|.+.. +..|.+-|-.++. ..+.+.
T Consensus 118 ~~~~~~~deAl~~~~~----~~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~ggek~q 190 (299)
T KOG3081|consen 118 YMHDGDFDEALKALHL----GENLEAAALNVQILLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATGGEKIQ 190 (299)
T ss_pred hhcCCChHHHHHHHhc----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhccchhhh
Confidence 4446789999888876 222123333 555667889999999999998763 5566665555554 446799
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHH
Q 047934 226 DAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRERG-VEKAQSVIATL 304 (344)
Q Consensus 226 ~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~-~e~a~~l~~~M 304 (344)
+|.-+|++|.++ ..|+..+.+-+..++...|++++|..++++.....-. +..|...+|.+--..|. .+-..+.+..+
T Consensus 191 dAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gkd~~~~~r~l~QL 268 (299)
T KOG3081|consen 191 DAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPETLANLIVLALHLGKDAEVTERNLSQL 268 (299)
T ss_pred hHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCCChHHHHHHHHHH
Confidence 999999999764 6789999999999999999999999999998876433 56666555555555564 44556666666
Q ss_pred HHC
Q 047934 305 KEK 307 (344)
Q Consensus 305 ~~~ 307 (344)
+..
T Consensus 269 k~~ 271 (299)
T KOG3081|consen 269 KLS 271 (299)
T ss_pred Hhc
Confidence 653
No 90
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=96.66 E-value=0.1 Score=43.66 Aligned_cols=113 Identities=13% Similarity=0.129 Sum_probs=85.5
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHH-----HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHHcCCHHH
Q 047934 154 SEPPQEADEIFKKMKETGLIPNAV-----AMLDGLCKDGLIQEAMKLFGLMREKGTIPEV--VIYTAVVDGFCKAQKFDD 226 (344)
Q Consensus 154 sg~~~~A~~lf~~M~~~gi~p~~~-----tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~--~tyn~LI~ay~k~g~~e~ 226 (344)
.++.+.+...++.+....-.-.+. .+-..+...|++++|...|++.....-.++. ...-.|-..+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 677889999999988864331122 2557788899999999999999987632322 234456778889999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 047934 227 AKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIE 268 (344)
Q Consensus 227 A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~ 268 (344)
|+.+++..... ......+..+=+.|.+.|+.++|...|+.
T Consensus 104 Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 104 ALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999775433 33455677888899999999999999875
No 91
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=96.56 E-value=0.17 Score=45.00 Aligned_cols=126 Identities=11% Similarity=0.111 Sum_probs=95.6
Q ss_pred CCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHHcCC--HHHHH
Q 047934 154 SEPPQEADEIFKKMKETGLI--PNAVAMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDG-FCKAQK--FDDAK 228 (344)
Q Consensus 154 sg~~~~A~~lf~~M~~~gi~--p~~~tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~a-y~k~g~--~e~A~ 228 (344)
.++.+++...+....+.+-. --|..+-..|...|++++|...|+...+.. +-+...+..+-.+ |...|+ .++|.
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~ 130 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTR 130 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence 45677888777776654311 124567788999999999999999888764 2367777777776 467777 59999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 047934 229 RIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTFV 282 (344)
Q Consensus 229 ~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty~ 282 (344)
+++++..+..-. +...+..+-.++.+.|++++|...|+++.+.. .|+..-+.
T Consensus 131 ~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~-~~~~~r~~ 182 (198)
T PRK10370 131 EMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDLN-SPRVNRTQ 182 (198)
T ss_pred HHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCccHHH
Confidence 999999887433 67888999999999999999999999998763 34444443
No 92
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=96.53 E-value=0.09 Score=41.31 Aligned_cols=100 Identities=15% Similarity=0.098 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCCHHHHHHH
Q 047934 209 VIYTAVVDGFCKAQKFDDAKRIFRKMQSNGI--APNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAG--HSPNVTTFVGL 284 (344)
Q Consensus 209 ~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi--~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~g--v~pd~~ty~~l 284 (344)
.++-.+...+.+.|++++|...|..+....- ......+..+..+|.+.|++++|.+.|+.+.... .......+..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 3455666777888999999999998876521 1123466678888899999999999999887642 11224556677
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCC
Q 047934 285 VDGLCRERGVEKAQSVIATLKEKG 308 (344)
Q Consensus 285 L~a~~~~G~~e~a~~l~~~M~~~G 308 (344)
..++...|+.++|.+.+.++.+..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHC
Confidence 777888999999999999888763
No 93
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=96.49 E-value=0.12 Score=52.62 Aligned_cols=157 Identities=15% Similarity=0.149 Sum_probs=111.2
Q ss_pred CCCCCCHHHHHHHHHHHHHC-----CC-CCCHHH----HHHHHHHcCCHHHHHHHHHHHHHc-----C--CCCCHHHHHH
Q 047934 151 EPISEPPQEADEIFKKMKET-----GL-IPNAVA----MLDGLCKDGLIQEAMKLFGLMREK-----G--TIPEVVIYTA 213 (344)
Q Consensus 151 ~~~sg~~~~A~~lf~~M~~~-----gi-~p~~~t----li~~~~k~g~~~~A~~lf~~M~~~-----g--~~pd~~tyn~ 213 (344)
|...|+++.|+.+|....+. |. .|...+ +-..|...+++.+|..+|+.+..- | .+.-..+++.
T Consensus 209 y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~n 288 (508)
T KOG1840|consen 209 YAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNN 288 (508)
T ss_pred HHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 33478899999999976653 21 233334 345777889999999999988632 2 1223456677
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH---C--CC-CCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCC----HH
Q 047934 214 VVDGFCKAQKFDDAKRIFRKMQS---N--GI-APNAF-SYNLLIQGLYKCNKLEEAVEYCIEMLEA---GHSPN----VT 279 (344)
Q Consensus 214 LI~ay~k~g~~e~A~~vf~~M~~---~--gi-~pd~~-tyn~LI~ay~k~g~~~~A~~lf~~M~~~---gv~pd----~~ 279 (344)
|-..|.+.|++++|+..++...+ + |. .+.+. -++.+...|+..+.+++|..+++...+- -..++ ..
T Consensus 289 La~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~ 368 (508)
T KOG1840|consen 289 LAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAK 368 (508)
T ss_pred HHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHH
Confidence 77789999999998887776533 1 21 22333 3567788888899999999998875431 12222 35
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 047934 280 TFVGLVDGLCRERGVEKAQSVIATLKEK 307 (344)
Q Consensus 280 ty~~lL~a~~~~G~~e~a~~l~~~M~~~ 307 (344)
+++-|-..|-+.|++++|.+++......
T Consensus 369 ~~~nl~~l~~~~gk~~ea~~~~k~ai~~ 396 (508)
T KOG1840|consen 369 IYANLAELYLKMGKYKEAEELYKKAIQI 396 (508)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 6888999999999999999999987643
No 94
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.45 E-value=0.04 Score=45.55 Aligned_cols=95 Identities=12% Similarity=0.170 Sum_probs=49.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 047934 207 EVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVD 286 (344)
Q Consensus 207 d~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~ 286 (344)
|..++.++|-++++.|+++....+.+..- |+..+. -...+. --....+.|+..+..+++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~W--gI~~~~---------~~~~~~---------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVW--GIDVNG---------KKKEGD---------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhc--CCCCCC---------ccccCc---------cCCCCCCCCCHHHHHHHHH
Confidence 45667777777777777777777665431 111110 000000 0011234566666666666
Q ss_pred HHHHcCCHHHHHHHHHHHHH-CCCcccHHHHHHHHh
Q 047934 287 GLCRERGVEKAQSVIATLKE-KGFLVNDKAVREFLD 321 (344)
Q Consensus 287 a~~~~G~~e~a~~l~~~M~~-~Gi~p~~~~~~~Ll~ 321 (344)
+|+..|++..|.++++...+ .++..+..+|..|++
T Consensus 61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 66666666666666665443 355555555555553
No 95
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=96.41 E-value=0.009 Score=45.14 Aligned_cols=81 Identities=21% Similarity=0.230 Sum_probs=39.9
Q ss_pred cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 047934 221 AQKFDDAKRIFRKMQSNGIA-PNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRERGVEKAQS 299 (344)
Q Consensus 221 ~g~~e~A~~vf~~M~~~gi~-pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~~e~a~~ 299 (344)
.|+++.|..+|+++.+..-. ++...|-.+-.+|.+.|++++|.++++. ...+. .+....-.+-.+|.+.|++++|.+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHH
Confidence 35566666666666554221 1233344456666666666666666655 11111 112222233455556666666666
Q ss_pred HHHH
Q 047934 300 VIAT 303 (344)
Q Consensus 300 l~~~ 303 (344)
++++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 6653
No 96
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.40 E-value=0.2 Score=49.89 Aligned_cols=146 Identities=14% Similarity=0.157 Sum_probs=89.5
Q ss_pred CCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHcCCHHHHHHH
Q 047934 154 SEPPQEADEIFKKMKETGL--IPNAVAMLDGLCKDGLIQEAMKLFGLMREKGTIPEV-VIYTAVVDGFCKAQKFDDAKRI 230 (344)
Q Consensus 154 sg~~~~A~~lf~~M~~~gi--~p~~~tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~-~tyn~LI~ay~k~g~~e~A~~v 230 (344)
.+++..|..||++...-+. .|-|.-.+..=.++..+.+|..+|+..... -|-+ ..|=..+-|=-..|++..|+++
T Consensus 86 q~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymEE~LgNi~gaRqi 163 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYMEEMLGNIAGARQI 163 (677)
T ss_pred HHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHHHHhcccHHHHHH
Confidence 3578889999998776542 223444566666777777777777765543 1222 2333344444556667777777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 047934 231 FRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRERGVEKAQSVIATLK 305 (344)
Q Consensus 231 f~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~~e~a~~l~~~M~ 305 (344)
|+.-.+. +|+...|.+.|..=.+-..++.|..++++..-. .|++.+|---..-=.+.|.+..++.++....
T Consensus 164 ferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAi 234 (677)
T KOG1915|consen 164 FERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAI 234 (677)
T ss_pred HHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 7665543 667777777777766667777777777666543 3666666555555555666666666655544
No 97
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=96.40 E-value=0.21 Score=52.95 Aligned_cols=115 Identities=15% Similarity=0.167 Sum_probs=96.0
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 047934 154 SEPPQEADEIFKKMKETGLIPNAV----AMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKR 229 (344)
Q Consensus 154 sg~~~~A~~lf~~M~~~gi~p~~~----tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~ 229 (344)
.|.+++|+++++...+. .|+.. .+..++.+.+++++|+..++......- -+......+-.++.+.|++++|..
T Consensus 99 ~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p-~~~~~~~~~a~~l~~~g~~~~A~~ 175 (694)
T PRK15179 99 AHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGS-SSAREILLEAKSWDEIGQSEQADA 175 (694)
T ss_pred cCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCC-CCHHHHHHHHHHHHHhcchHHHHH
Confidence 68999999999998864 56544 588999999999999999999887632 256667777888889999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 047934 230 IFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEA 272 (344)
Q Consensus 230 vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~ 272 (344)
+|++....+ .-+..+|..+-.++-+.|+.++|...|++..+.
T Consensus 176 ~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 176 CFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999842 234788888888999999999999999998764
No 98
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=96.37 E-value=0.22 Score=55.18 Aligned_cols=172 Identities=12% Similarity=0.117 Sum_probs=133.1
Q ss_pred CCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 047934 154 SEPPQEADEIFKKMKETGLIPN-AVAMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRIFR 232 (344)
Q Consensus 154 sg~~~~A~~lf~~M~~~gi~p~-~~tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf~ 232 (344)
-|.-+...++|++..+---.-. ..+|...|.+.+..++|-++|+.|.++ +.-...+|...++.+.+..+-+.|..++.
T Consensus 1510 yG~eesl~kVFeRAcqycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~ 1588 (1710)
T KOG1070|consen 1510 YGTEESLKKVFERACQYCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLK 1588 (1710)
T ss_pred hCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHH
Confidence 3566777888888776432111 236899999999999999999999876 33577899999999999999999999998
Q ss_pred HHHHCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 047934 233 KMQSNGIAPN---AFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRERGVEKAQSVIATLKEKGF 309 (344)
Q Consensus 233 ~M~~~gi~pd---~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~~e~a~~l~~~M~~~Gi 309 (344)
+..+. -|- +....-.+..-.++|+.+.+..+|+.....- .--...|+..|+.=.+.|+.+.++.+|+.....++
T Consensus 1589 rAL~~--lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l 1665 (1710)
T KOG1070|consen 1589 RALKS--LPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKL 1665 (1710)
T ss_pred HHHhh--cchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCC
Confidence 87664 222 3334455555668999999999999988652 22467899999999999999999999999999988
Q ss_pred cccH--HHHHHHHhccCCCChH
Q 047934 310 LVND--KAVREFLDKKAPFSSS 329 (344)
Q Consensus 310 ~p~~--~~~~~Ll~~yak~g~~ 329 (344)
.+-. ..|..+++.=-..|+.
T Consensus 1666 ~~kkmKfffKkwLeyEk~~Gde 1687 (1710)
T KOG1070|consen 1666 SIKKMKFFFKKWLEYEKSHGDE 1687 (1710)
T ss_pred ChhHhHHHHHHHHHHHHhcCch
Confidence 7763 5677777766565553
No 99
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.35 E-value=0.41 Score=47.63 Aligned_cols=199 Identities=11% Similarity=0.044 Sum_probs=142.8
Q ss_pred hHHhhhhhcCCCCCCCCCcccccchhcccccCCCCCCCCCHHHHHHHHHHHHHCCC-CC-CHH-----------------
Q 047934 117 NFLDQFKLAIDKKPGNPQQNESLGQRQEQKPNRNEPISEPPQEADEIFKKMKETGL-IP-NAV----------------- 177 (344)
Q Consensus 117 ~~~~k~gl~~~~~v~~~l~~~~~~~~~y~~~~~~~~~sg~~~~A~~lf~~M~~~gi-~p-~~~----------------- 177 (344)
++..+.-+....|+.++-+.+.... ..|...++++|+.+|+++...+- .. +..
T Consensus 246 ~~~k~e~l~~~gf~~~~~i~~~~A~--------~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~ 317 (559)
T KOG1155|consen 246 ALQKKERLSSVGFPNSMYIKTQIAA--------ASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSY 317 (559)
T ss_pred HHHHHHHHHhccCCccHHHHHHHHH--------HHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHH
Confidence 3344445555557766666443333 33456789999999999998641 11 110
Q ss_pred -----------------HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 047934 178 -----------------AMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIA 240 (344)
Q Consensus 178 -----------------tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~ 240 (344)
.+-+-|+-.+..++|..+|+...+.+- -....|+.+=.-|....+...|.+-++...+-. +
T Consensus 318 LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp-~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p 395 (559)
T KOG1155|consen 318 LAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNP-KYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-P 395 (559)
T ss_pred HHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCc-chhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-c
Confidence 134445556788899999998877532 245677777788999999999999999887643 3
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCcccHHHHHHHH
Q 047934 241 PNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRERGVEKAQSVIATLKEKGFLVNDKAVREFL 320 (344)
Q Consensus 241 pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~~e~a~~l~~~M~~~Gi~p~~~~~~~Ll 320 (344)
.|-..|-.|=.+|.-.+...-|+-.|++-.... +-|...|.+|-.+|.+.++.++|.+-|......|-. +...+..|-
T Consensus 396 ~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt-e~~~l~~La 473 (559)
T KOG1155|consen 396 RDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT-EGSALVRLA 473 (559)
T ss_pred hhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-chHHHHHHH
Confidence 477889999999999999999999998876542 348999999999999999999999999998876643 444454554
Q ss_pred hccCCCC
Q 047934 321 DKKAPFS 327 (344)
Q Consensus 321 ~~yak~g 327 (344)
+.|-+.+
T Consensus 474 kLye~l~ 480 (559)
T KOG1155|consen 474 KLYEELK 480 (559)
T ss_pred HHHHHHH
Confidence 4444433
No 100
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.33 E-value=0.51 Score=43.38 Aligned_cols=155 Identities=10% Similarity=0.017 Sum_probs=99.8
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCHH-----HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH--c--
Q 047934 151 EPISEPPQEADEIFKKMKETGLIPNAV-----AMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCK--A-- 221 (344)
Q Consensus 151 ~~~sg~~~~A~~lf~~M~~~gi~p~~~-----tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k--~-- 221 (344)
.+..|++++|.+.|+++....-...+. -+..+|.+.++.++|...|+.+.+..-.....-|.-.+.+.+. .
T Consensus 42 ~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~ 121 (243)
T PRK10866 42 KLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDD 121 (243)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcch
Confidence 355799999999999998854333333 2567788999999999999999876433333444444444431 0
Q ss_pred -------------CC---HHHHHHHHHHHHHC----CCCCCHHHH------------HHHHHHHHHcCCHHHHHHHHHHH
Q 047934 222 -------------QK---FDDAKRIFRKMQSN----GIAPNAFSY------------NLLIQGLYKCNKLEEAVEYCIEM 269 (344)
Q Consensus 222 -------------g~---~e~A~~vf~~M~~~----gi~pd~~ty------------n~LI~ay~k~g~~~~A~~lf~~M 269 (344)
.+ ..+|...|+.+.+. ...++.... -.+..-|.+.|.+..|..-|+.+
T Consensus 122 ~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v 201 (243)
T PRK10866 122 SALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQM 201 (243)
T ss_pred hhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHH
Confidence 11 23455555555443 111111111 12344477888888888888888
Q ss_pred HHc--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 047934 270 LEA--GHSPNVTTFVGLVDGLCRERGVEKAQSVIATLK 305 (344)
Q Consensus 270 ~~~--gv~pd~~ty~~lL~a~~~~G~~e~a~~l~~~M~ 305 (344)
.+. +..........++.+|...|..++|..+...+.
T Consensus 202 ~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 202 LRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 764 445566667778888888888888887776554
No 101
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.33 E-value=0.057 Score=44.61 Aligned_cols=82 Identities=12% Similarity=0.135 Sum_probs=54.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHH---------------HcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCC
Q 047934 177 VAMLDGLCKDGLIQEAMKLFGLMR---------------EKGTIPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQSN-GIA 240 (344)
Q Consensus 177 ~tli~~~~k~g~~~~A~~lf~~M~---------------~~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~-gi~ 240 (344)
.++|.++++.|+.+....+.+..= .....|+..+..+++.+|+..+++..|.++.+...+. +++
T Consensus 6 ~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~ 85 (126)
T PF12921_consen 6 CNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIP 85 (126)
T ss_pred HHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCC
Confidence 478999999999999998886441 0123456666666666666666666666666666553 566
Q ss_pred CCHHHHHHHHHHHHHcCC
Q 047934 241 PNAFSYNLLIQGLYKCNK 258 (344)
Q Consensus 241 pd~~tyn~LI~ay~k~g~ 258 (344)
.+..+|..|+.-+...-.
T Consensus 86 i~~~~W~~Ll~W~~v~s~ 103 (126)
T PF12921_consen 86 IPKEFWRRLLEWAYVLSS 103 (126)
T ss_pred CCHHHHHHHHHHHHHhcC
Confidence 666666666665554433
No 102
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=96.31 E-value=0.31 Score=43.79 Aligned_cols=149 Identities=15% Similarity=0.145 Sum_probs=103.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCC-C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CCH-HHHHHHHHHH
Q 047934 178 AMLDGLCKDGLIQEAMKLFGLMREKGTI-P-EVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIA-PNA-FSYNLLIQGL 253 (344)
Q Consensus 178 tli~~~~k~g~~~~A~~lf~~M~~~g~~-p-d~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~-pd~-~tyn~LI~ay 253 (344)
.+...+...|++++|...|+.+....-. | ...++..+-.+|...|++++|...++.+.+..-. +.. .++..+-.+|
T Consensus 38 ~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~ 117 (235)
T TIGR03302 38 EEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSN 117 (235)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHH
Confidence 4667788999999999999998765311 1 1246777888999999999999999999875321 111 2444444455
Q ss_pred HHc--------CCHHHHHHHHHHHHHcCCCCCH-HHH-----------------HHHHHHHHHcCCHHHHHHHHHHHHHC
Q 047934 254 YKC--------NKLEEAVEYCIEMLEAGHSPNV-TTF-----------------VGLVDGLCRERGVEKAQSVIATLKEK 307 (344)
Q Consensus 254 ~k~--------g~~~~A~~lf~~M~~~gv~pd~-~ty-----------------~~lL~a~~~~G~~e~a~~l~~~M~~~ 307 (344)
.+. |+.++|.+.|+.+.... |+. ..+ ..+-..+.+.|+.++|...+....+.
T Consensus 118 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~ 195 (235)
T TIGR03302 118 YNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVEN 195 (235)
T ss_pred HHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 544 77899999999988652 322 111 12345567889999999999998865
Q ss_pred C--CcccHHHHHHHHhccCCCCh
Q 047934 308 G--FLVNDKAVREFLDKKAPFSS 328 (344)
Q Consensus 308 G--i~p~~~~~~~Ll~~yak~g~ 328 (344)
. -......+..+...|.+.|.
T Consensus 196 ~p~~~~~~~a~~~l~~~~~~lg~ 218 (235)
T TIGR03302 196 YPDTPATEEALARLVEAYLKLGL 218 (235)
T ss_pred CCCCcchHHHHHHHHHHHHHcCC
Confidence 2 22234566677777777665
No 103
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=96.29 E-value=0.11 Score=55.51 Aligned_cols=156 Identities=15% Similarity=0.158 Sum_probs=114.6
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 047934 154 SEPPQEADEIFKKMKETGLIPNAV--AMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRIF 231 (344)
Q Consensus 154 sg~~~~A~~lf~~M~~~gi~p~~~--tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf 231 (344)
.+..+.|+++|......+-+--|. -+=-.++..|++.+|..+|.+.++... -+..+|-.+-.+|..+|.+..|.++|
T Consensus 625 kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmY 703 (1018)
T KOG2002|consen 625 KKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMY 703 (1018)
T ss_pred HHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHH
Confidence 346889999998877655331132 255667889999999999999988744 23456778889999999999999999
Q ss_pred HHHHHC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH--H----------------HcC
Q 047934 232 RKMQSN-GIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGL--C----------------RER 292 (344)
Q Consensus 232 ~~M~~~-gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~--~----------------~~G 292 (344)
+...+. .-.-+....+.|-.++.++|.+.+|.+........-..-..+-||..+-.. + ..+
T Consensus 704 e~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~ 783 (1018)
T KOG2002|consen 704 ENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKRTLEEVLEAVK 783 (1018)
T ss_pred HHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 987664 434567788999999999999999998877766654444455566443332 1 134
Q ss_pred CHHHHHHHHHHHHHCCCc
Q 047934 293 GVEKAQSVIATLKEKGFL 310 (344)
Q Consensus 293 ~~e~a~~l~~~M~~~Gi~ 310 (344)
.++.|.++|.+|...+-.
T Consensus 784 ~le~a~r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 784 ELEEARRLFTELSKNGDK 801 (1018)
T ss_pred HHHHHHHHHHHHHhcCCC
Confidence 578899999999887543
No 104
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=96.29 E-value=0.34 Score=48.27 Aligned_cols=152 Identities=17% Similarity=0.063 Sum_probs=116.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHH
Q 047934 176 AVAMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPN-AFSYNLLIQGLY 254 (344)
Q Consensus 176 ~~tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd-~~tyn~LI~ay~ 254 (344)
+.-.-..+...|..++|+..+..+.+. .+-|++......+.+.+.++..+|.+.++.+... .|+ ...+-.+-.+|.
T Consensus 309 ~YG~A~~~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all 385 (484)
T COG4783 309 QYGRALQTYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALL 385 (484)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHH
Confidence 334455666788999999999998765 4457777888899999999999999999999886 555 667778889999
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCcccHHHHHHHHhccCCCChHHH
Q 047934 255 KCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRERGVEKAQSVIATLKEK-GFLVNDKAVREFLDKKAPFSSSVW 331 (344)
Q Consensus 255 k~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~~e~a~~l~~~M~~~-Gi~p~~~~~~~Ll~~yak~g~~~W 331 (344)
+.|+.++|..++++.... .+-|...|..|-.+|...|+..++..-..++... |-.-....+...-..-.+.|...|
T Consensus 386 ~~g~~~eai~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~~~~~~~~~~~ 462 (484)
T COG4783 386 KGGKPQEAIRILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMRASQQVKLGFPDW 462 (484)
T ss_pred hcCChHHHHHHHHHHhhc-CCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhccCCcHHH
Confidence 999999999999988765 3558899999999999999998888877776543 322233333333344445555554
No 105
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.23 E-value=0.32 Score=44.20 Aligned_cols=128 Identities=17% Similarity=0.017 Sum_probs=103.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 047934 179 MLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNK 258 (344)
Q Consensus 179 li~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~ 258 (344)
|-.+|...|+...|..-+++..+.. +-+..+|.++-..|-+.|..+.|.+-|++.....- -+-.+.|..=.-+|..|.
T Consensus 41 Lal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p-~~GdVLNNYG~FLC~qg~ 118 (250)
T COG3063 41 LALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAP-NNGDVLNNYGAFLCAQGR 118 (250)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCC-CccchhhhhhHHHHhCCC
Confidence 6778999999999999999988763 33567889999999999999999999999876521 245667777777889999
Q ss_pred HHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 047934 259 LEEAVEYCIEMLEAGHSP-NVTTFVGLVDGLCRERGVEKAQSVIATLKEKG 308 (344)
Q Consensus 259 ~~~A~~lf~~M~~~gv~p-d~~ty~~lL~a~~~~G~~e~a~~l~~~M~~~G 308 (344)
+++|...|++-...-.-+ -..||..+.-+-.+.|..+.|++.+..-.+..
T Consensus 119 ~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d 169 (250)
T COG3063 119 PEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD 169 (250)
T ss_pred hHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC
Confidence 999999999988753222 24577777777779999999999999887763
No 106
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=96.23 E-value=0.035 Score=59.09 Aligned_cols=132 Identities=10% Similarity=0.081 Sum_probs=104.9
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 047934 187 GLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYC 266 (344)
Q Consensus 187 g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf 266 (344)
+..++|+++|....+.. +-|.+.-|-+=-.++.+|++.+|..||.+..+.... +..+|-.+-.+|..+|++..|+++|
T Consensus 626 k~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~-~~dv~lNlah~~~e~~qy~~AIqmY 703 (1018)
T KOG2002|consen 626 KHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSD-FEDVWLNLAHCYVEQGQYRLAIQMY 703 (1018)
T ss_pred HHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHhh-CCceeeeHHHHHHHHHHHHHHHHHH
Confidence 35678999998877653 347777788888899999999999999999987432 4568999999999999999999999
Q ss_pred HHHHHc-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCcccHHHHHHHH
Q 047934 267 IEMLEA-GHSPNVTTFVGLVDGLCRERGVEKAQSVIATLKEKGFLVNDKAVREFL 320 (344)
Q Consensus 267 ~~M~~~-gv~pd~~ty~~lL~a~~~~G~~e~a~~l~~~M~~~Gi~p~~~~~~~Ll 320 (344)
+..... .-.-+......|-+++-..|.+.+|.+..-........-....||..+
T Consensus 704 e~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~ 758 (1018)
T KOG2002|consen 704 ENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLAL 758 (1018)
T ss_pred HHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHH
Confidence 986654 445577788889999999999999999888777665554455555544
No 107
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=96.21 E-value=0.48 Score=48.48 Aligned_cols=150 Identities=14% Similarity=0.061 Sum_probs=109.1
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHcCCHHHHHHHHHHHHHc----C----------CCCCH--HHHHHHHHHHHHc
Q 047934 158 QEADEIFKKMKETGLIPNAVAMLDGLCKDGLIQEAMKLFGLMREK----G----------TIPEV--VIYTAVVDGFCKA 221 (344)
Q Consensus 158 ~~A~~lf~~M~~~gi~p~~~tli~~~~k~g~~~~A~~lf~~M~~~----g----------~~pd~--~tyn~LI~ay~k~ 221 (344)
..+...+..+..+|+++-.+.|-..|......+-..+++..+... + -.|.. +++.-|-..|-..
T Consensus 128 ~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~ 207 (517)
T PF12569_consen 128 ERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYL 207 (517)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHh
Confidence 355666677788887654445555556555555556666655432 1 12444 3445556678899
Q ss_pred CCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 047934 222 QKFDDAKRIFRKMQSNGIAPN-AFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRERGVEKAQSV 300 (344)
Q Consensus 222 g~~e~A~~vf~~M~~~gi~pd-~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~~e~a~~l 300 (344)
|++++|+.+.+...++ .|+ +..|.+--..|-+.|++++|.+.++........ |...=+-....+.++|++++|.++
T Consensus 208 g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~ 284 (517)
T PF12569_consen 208 GDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKT 284 (517)
T ss_pred CCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHH
Confidence 9999999999988886 455 567888888888999999999999998876433 666666777888899999999999
Q ss_pred HHHHHHCCCc
Q 047934 301 IATLKEKGFL 310 (344)
Q Consensus 301 ~~~M~~~Gi~ 310 (344)
+...-+.+..
T Consensus 285 ~~~Ftr~~~~ 294 (517)
T PF12569_consen 285 ASLFTREDVD 294 (517)
T ss_pred HHhhcCCCCC
Confidence 9998887753
No 108
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.19 E-value=0.11 Score=48.69 Aligned_cols=128 Identities=16% Similarity=0.124 Sum_probs=91.8
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHH---H-HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 047934 156 PPQEADEIFKKMKETGLIPNAVA---M-LDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRIF 231 (344)
Q Consensus 156 ~~~~A~~lf~~M~~~gi~p~~~t---l-i~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf 231 (344)
.++.|+.||.+..+.+.. ++.. . .--|...++.+.|..+|+...+. +..+...|..-|+.+.+.++.+.|+.+|
T Consensus 16 g~~~aR~vF~~a~~~~~~-~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l~~~~d~~~aR~lf 93 (280)
T PF05843_consen 16 GIEAARKVFKRARKDKRC-TYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFLIKLNDINNARALF 93 (280)
T ss_dssp HHHHHHHHHHHHHCCCCS--THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred ChHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHhCcHHHHHHHH
Confidence 388999999999865432 2322 1 11233356777799999998876 6678899999999999999999999999
Q ss_pred HHHHHCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 047934 232 RKMQSNGIAPN---AFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGL 288 (344)
Q Consensus 232 ~~M~~~gi~pd---~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~ 288 (344)
++.... +..+ ...|...|+-=.+.|+++.+.++..++.+. .|+...+..+++-|
T Consensus 94 er~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~~ry 150 (280)
T PF05843_consen 94 ERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELFSDRY 150 (280)
T ss_dssp HHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHHHCCT
T ss_pred HHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHHHHHh
Confidence 998765 3222 259999999999999999999999998875 34444444454444
No 109
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=96.16 E-value=0.17 Score=49.19 Aligned_cols=104 Identities=14% Similarity=0.052 Sum_probs=73.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 047934 181 DGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLE 260 (344)
Q Consensus 181 ~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~ 260 (344)
..+...|++++|+++|.+..+.. +-+...|..+-.+|.+.|++++|+..++...+.. .-+...|..+-.+|...|+++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHH
Confidence 44556788888888888877653 2356777777788888888888888888887653 225667777778888888888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 047934 261 EAVEYCIEMLEAGHSPNVTTFVGLVDGL 288 (344)
Q Consensus 261 ~A~~lf~~M~~~gv~pd~~ty~~lL~a~ 288 (344)
+|...|++.... .|+...+...+..|
T Consensus 88 eA~~~~~~al~l--~P~~~~~~~~l~~~ 113 (356)
T PLN03088 88 TAKAALEKGASL--APGDSRFTKLIKEC 113 (356)
T ss_pred HHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 888888887764 35544444444333
No 110
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.13 E-value=0.29 Score=50.38 Aligned_cols=148 Identities=14% Similarity=0.133 Sum_probs=118.9
Q ss_pred CCCHHHHHHHHHHHHHCCC-CCC-HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHH
Q 047934 154 SEPPQEADEIFKKMKETGL-IPN-AVAMLDGLCKDGLIQEAMKLFGLMREKGTIP-EVVIYTAVVDGFCKAQKFDDAKRI 230 (344)
Q Consensus 154 sg~~~~A~~lf~~M~~~gi-~p~-~~tli~~~~k~g~~~~A~~lf~~M~~~g~~p-d~~tyn~LI~ay~k~g~~e~A~~v 230 (344)
-|++++|++.++....-.- .++ .+-|-..|...|.+++|..+|....+- .| =...+|.|-..|-..|++++|...
T Consensus 333 ~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~ 410 (966)
T KOG4626|consen 333 KGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMC 410 (966)
T ss_pred ccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHH
Confidence 4889999999988765321 111 235788999999999999999877653 33 346789999999999999999999
Q ss_pred HHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 047934 231 FRKMQSNGIAPN-AFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPN-VTTFVGLVDGLCRERGVEKAQSVIATLKEK 307 (344)
Q Consensus 231 f~~M~~~gi~pd-~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd-~~ty~~lL~a~~~~G~~e~a~~l~~~M~~~ 307 (344)
+++..+ |+|+ ...|+.|=..|-..|+++.|...+.+...- .|. ...++.|-+.|-..|++.+|..-+++..+.
T Consensus 411 Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLkl 485 (966)
T KOG4626|consen 411 YKEALR--IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKL 485 (966)
T ss_pred HHHHHh--cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHcc
Confidence 998775 5777 468899999999999999999998877654 343 456788999999999999999999988765
No 111
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.04 E-value=0.056 Score=50.52 Aligned_cols=101 Identities=16% Similarity=0.090 Sum_probs=70.9
Q ss_pred CCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC----------------HHHHH
Q 047934 205 IPEVVIYTAVVDGFCKA-----QKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNK----------------LEEAV 263 (344)
Q Consensus 205 ~pd~~tyn~LI~ay~k~-----g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~----------------~~~A~ 263 (344)
+-|-..|-+.+..+... +.++-....++.|.+-|++.|..+|+.||..+-|..- -+-++
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I 143 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAI 143 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHH
Confidence 45777887777777655 5677778888899999999999999999998876432 13466
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHH
Q 047934 264 EYCIEMLEAGHSPNVTTFVGLVDGLCRERG-VEKAQSVIATLK 305 (344)
Q Consensus 264 ~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~-~e~a~~l~~~M~ 305 (344)
+++++|...|+.||..+-..||.++++.+. ..+...+.--|.
T Consensus 144 ~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 144 KVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred HHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 777777777777777777777777766664 233344444443
No 112
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=96.03 E-value=0.39 Score=41.34 Aligned_cols=81 Identities=12% Similarity=-0.001 Sum_probs=58.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 047934 179 MLDGLCKDGLIQEAMKLFGLMREKGTIPE--VVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKC 256 (344)
Q Consensus 179 li~~~~k~g~~~~A~~lf~~M~~~g~~pd--~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~ 256 (344)
+-..|...|++++|...|++..+..-.+. ...+..+-..|.+.|++++|...+++..... .-+...+..+..+|...
T Consensus 41 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~ 119 (172)
T PRK02603 41 DGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAVIYHKR 119 (172)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHc
Confidence 55567778999999999998876533222 4678888888889999999999998887642 12455666666777776
Q ss_pred CCHH
Q 047934 257 NKLE 260 (344)
Q Consensus 257 g~~~ 260 (344)
|+..
T Consensus 120 g~~~ 123 (172)
T PRK02603 120 GEKA 123 (172)
T ss_pred CChH
Confidence 6643
No 113
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.01 E-value=0.034 Score=39.78 Aligned_cols=50 Identities=24% Similarity=0.257 Sum_probs=21.1
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 047934 221 AQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLE 271 (344)
Q Consensus 221 ~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~ 271 (344)
.|++++|.++|+.+....-. +...+-.+..+|.+.|++++|.++++++..
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred ccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444444444444333111 333444444444444444444444444443
No 114
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=95.99 E-value=0.051 Score=40.93 Aligned_cols=81 Identities=21% Similarity=0.268 Sum_probs=45.8
Q ss_pred cCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 047934 186 DGLIQEAMKLFGLMREKGTI-PEVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVE 264 (344)
Q Consensus 186 ~g~~~~A~~lf~~M~~~g~~-pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~ 264 (344)
.|+++.|+.+|+.+.+..-. ++...+-.+-.+|.+.|++++|..+++. .+.+. .+....-.+-.+|.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHH
Confidence 45667777777777655321 1333444466777777777777777766 21111 122333344666677777777777
Q ss_pred HHHH
Q 047934 265 YCIE 268 (344)
Q Consensus 265 lf~~ 268 (344)
+|++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 7654
No 115
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=95.97 E-value=0.49 Score=45.10 Aligned_cols=114 Identities=11% Similarity=-0.004 Sum_probs=80.3
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 047934 155 EPPQEADEIFKKMKETGLIPNAV----AMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRI 230 (344)
Q Consensus 155 g~~~~A~~lf~~M~~~gi~p~~~----tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~v 230 (344)
+..+.+.+.+.. .....|+.. .+-..+...|++++|.+.++...+.. +.+...+..+-..|...|++++|...
T Consensus 94 ~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~ 170 (355)
T cd05804 94 GMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAF 170 (355)
T ss_pred cCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHH
Confidence 445556655554 122233322 23346778899999999999888763 33567788888889999999999999
Q ss_pred HHHHHHCCC-CCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 047934 231 FRKMQSNGI-APNA--FSYNLLIQGLYKCNKLEEAVEYCIEMLE 271 (344)
Q Consensus 231 f~~M~~~gi-~pd~--~tyn~LI~ay~k~g~~~~A~~lf~~M~~ 271 (344)
+++.....- .++. ..|..+...+...|+.++|..++++...
T Consensus 171 l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 171 MESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred HHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 988776422 2232 3466778888899999999999998754
No 116
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=95.97 E-value=0.19 Score=48.90 Aligned_cols=101 Identities=13% Similarity=0.072 Sum_probs=80.6
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH
Q 047934 216 DGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRERGVE 295 (344)
Q Consensus 216 ~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~~e 295 (344)
..+...|++++|...|++..+..- -+...|..+-.+|.+.|++++|+..+++..... ..+...|..+-.+|...|+++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~P-~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLDP-NNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHH
Confidence 345678999999999999988632 257788889999999999999999999998753 225677888888999999999
Q ss_pred HHHHHHHHHHHCCCcccHHHHHHHH
Q 047934 296 KAQSVIATLKEKGFLVNDKAVREFL 320 (344)
Q Consensus 296 ~a~~l~~~M~~~Gi~p~~~~~~~Ll 320 (344)
+|...|+...+. .|+...+..++
T Consensus 88 eA~~~~~~al~l--~P~~~~~~~~l 110 (356)
T PLN03088 88 TAKAALEKGASL--APGDSRFTKLI 110 (356)
T ss_pred HHHHHHHHHHHh--CCCCHHHHHHH
Confidence 999999998874 44444444444
No 117
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=95.96 E-value=0.24 Score=47.00 Aligned_cols=148 Identities=21% Similarity=0.272 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHcC---------CHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHHcCC-
Q 047934 157 PQEADEIFKKMKETGLIPNAVAMLDGLCKDG---------LIQEAMKLFGLMREKG---TIPEVVIYTAVVDGFCKAQK- 223 (344)
Q Consensus 157 ~~~A~~lf~~M~~~gi~p~~~tli~~~~k~g---------~~~~A~~lf~~M~~~g---~~pd~~tyn~LI~ay~k~g~- 223 (344)
+++...+++.|.+.|..-+..+.+.++.-.. ....|.++|+.|++.. ..++..++.+||.+ ...+
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 6678888999999888766555555444333 3557899999999875 35677888888776 3333
Q ss_pred ---HHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCC---HHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HHcCC--
Q 047934 224 ---FDDAKRIFRKMQSNGIAPNAF-SYNLLIQGLYKCNK---LEEAVEYCIEMLEAGHSPNVTTFVGLVDGL-CRERG-- 293 (344)
Q Consensus 224 ---~e~A~~vf~~M~~~gi~pd~~-tyn~LI~ay~k~g~---~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~-~~~G~-- 293 (344)
.+.++.+|+.+.+.|+..+-. -+-+-|-+++.... ...+.++++.+++.|+++....|..+--.. ...+.
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLall~~~~~~ 235 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLALLEDPEEK 235 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHHhcCCchHH
Confidence 367888899998887765433 34444444443222 447888999999999988777776442222 22222
Q ss_pred -HHHHHHHHHHHHH
Q 047934 294 -VEKAQSVIATLKE 306 (344)
Q Consensus 294 -~e~a~~l~~~M~~ 306 (344)
.+...++.+.+.+
T Consensus 236 ~~~~i~ev~~~L~~ 249 (297)
T PF13170_consen 236 IVEEIKEVIDELKE 249 (297)
T ss_pred HHHHHHHHHHHHhh
Confidence 3444555555554
No 118
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=95.84 E-value=0.29 Score=41.90 Aligned_cols=90 Identities=10% Similarity=-0.093 Sum_probs=59.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-
Q 047934 178 AMLDGLCKDGLIQEAMKLFGLMREKGTIP--EVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLY- 254 (344)
Q Consensus 178 tli~~~~k~g~~~~A~~lf~~M~~~g~~p--d~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~- 254 (344)
.+...+...|++++|+..|+......-.+ ...++..+-..|...|+.++|+..++...... +....++..+...|.
T Consensus 40 ~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la~i~~~ 118 (168)
T CHL00033 40 RDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMAVICHY 118 (168)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHH
Confidence 35556667788888888888776543222 23577777788888888888888888876542 223445556655665
Q ss_pred ------HcCCHHHHHHHHHH
Q 047934 255 ------KCNKLEEAVEYCIE 268 (344)
Q Consensus 255 ------k~g~~~~A~~lf~~ 268 (344)
+.|++++|+..+++
T Consensus 119 ~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 119 RGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred hhHHHHHcccHHHHHHHHHH
Confidence 56666655555544
No 119
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.81 E-value=0.08 Score=44.16 Aligned_cols=58 Identities=17% Similarity=0.175 Sum_probs=24.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 047934 246 YNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRERGVEKAQSVIATL 304 (344)
Q Consensus 246 yn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~~e~a~~l~~~M 304 (344)
...++..+...|++++|..+...+.... +-|...|..+|.+|...|+..+|.+++..+
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 3334444444444444444444444331 123444444444444444444444444443
No 120
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=95.80 E-value=0.042 Score=39.28 Aligned_cols=64 Identities=17% Similarity=0.327 Sum_probs=41.1
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 047934 184 CKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLI 250 (344)
Q Consensus 184 ~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI 250 (344)
.+.|++++|+++|+.+.+.. +-+...+-.+..+|.+.|++++|..+++.+... .|+...|..++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l~ 65 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQLL 65 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHHH
Confidence 45677777777777776552 226666667777777777777777777777665 45544444443
No 121
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=95.80 E-value=1.1 Score=47.87 Aligned_cols=169 Identities=11% Similarity=0.084 Sum_probs=120.5
Q ss_pred CCCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHcCCHHHHH
Q 047934 153 ISEPPQEADEIFKKMKETG---LIPNAVAMLDGLCKDGLIQEAMKLFGLMREKG-TIPEVVIYTAVVDGFCKAQKFDDAK 228 (344)
Q Consensus 153 ~sg~~~~A~~lf~~M~~~g---i~p~~~tli~~~~k~g~~~~A~~lf~~M~~~g-~~pd~~tyn~LI~ay~k~g~~e~A~ 228 (344)
+.|++++|.+++.+....+ ..| +.+|-..|-+.|+.++++..+ |.... .+-|...|-.+-+...+.|.++.|.
T Consensus 151 arg~~eeA~~i~~EvIkqdp~~~~a-y~tL~~IyEqrGd~eK~l~~~--llAAHL~p~d~e~W~~ladls~~~~~i~qA~ 227 (895)
T KOG2076|consen 151 ARGDLEEAEEILMEVIKQDPRNPIA-YYTLGEIYEQRGDIEKALNFW--LLAAHLNPKDYELWKRLADLSEQLGNINQAR 227 (895)
T ss_pred HhCCHHHHHHHHHHHHHhCccchhh-HHHHHHHHHHcccHHHHHHHH--HHHHhcCCCChHHHHHHHHHHHhcccHHHHH
Confidence 3589999999999988754 222 668999999999999998755 33333 4447788889999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH----HHHHHHHcCCHHHHHHHHHHH
Q 047934 229 RIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTFVG----LVDGLCRERGVEKAQSVIATL 304 (344)
Q Consensus 229 ~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty~~----lL~a~~~~G~~e~a~~l~~~M 304 (344)
-.|.+..... .++...+---...|-+.|+...|++.|.+|....-..|..-+.. ++..+...++-+.|.+.++..
T Consensus 228 ~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~ 306 (895)
T KOG2076|consen 228 YCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGA 306 (895)
T ss_pred HHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 9999988763 22333334456678899999999999999988643333333333 455566677778888888877
Q ss_pred HHC-CCcccHHHHHHHHhccCC
Q 047934 305 KEK-GFLVNDKAVREFLDKKAP 325 (344)
Q Consensus 305 ~~~-Gi~p~~~~~~~Ll~~yak 325 (344)
... +-..+...++.+..+|.+
T Consensus 307 ~s~~~~~~~~ed~ni~ael~l~ 328 (895)
T KOG2076|consen 307 LSKEKDEASLEDLNILAELFLK 328 (895)
T ss_pred HhhccccccccHHHHHHHHHHH
Confidence 663 333344455555544443
No 122
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.77 E-value=0.14 Score=47.85 Aligned_cols=112 Identities=13% Similarity=0.204 Sum_probs=80.8
Q ss_pred HHHHHHHHHH-CCCCCCHHHHHHHHHHc-----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH---------
Q 047934 160 ADEIFKKMKE-TGLIPNAVAMLDGLCKD-----GLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKF--------- 224 (344)
Q Consensus 160 A~~lf~~M~~-~gi~p~~~tli~~~~k~-----g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~--------- 224 (344)
.++.|....- ...+-+.-+++..+... +.++-....++.|.+-|+.-|..+|+.||+.+-|-.-.
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 3455665552 11122333555555543 46777777788999999999999999999999887532
Q ss_pred -------HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHH
Q 047934 225 -------DDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKL-EEAVEYCIEMLE 271 (344)
Q Consensus 225 -------e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~-~~A~~lf~~M~~ 271 (344)
+=+.+++++|...|+-||..+--.||.++++.+.. .+..++...|-+
T Consensus 133 ~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmPk 187 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMPK 187 (406)
T ss_pred hhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhhh
Confidence 23788999999999999999999999999988764 344455555543
No 123
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=95.65 E-value=0.35 Score=48.95 Aligned_cols=137 Identities=11% Similarity=0.153 Sum_probs=101.6
Q ss_pred HHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHH
Q 047934 189 IQEAMKLFGLMREKG-TIPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAP-NAFSYNLLIQGLYKCNKLEEAVEYC 266 (344)
Q Consensus 189 ~~~A~~lf~~M~~~g-~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~p-d~~tyn~LI~ay~k~g~~~~A~~lf 266 (344)
.+.....++.+...- ..| +.+|..+|+..-+..-+..|+.+|.+..+.+..+ +++.+++++.-||. ++..-|.++|
T Consensus 347 ~~~~~~~~~~ll~~~~~~~-tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIF 424 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDL-TLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIF 424 (656)
T ss_pred hhhhHHHHHHHHhhhccCC-ceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHH
Confidence 334444555554432 333 4678888888888888999999999999988877 88899999997775 7788899999
Q ss_pred HHHHHcCCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHCCCccc--HHHHHHHHhccCCCChH
Q 047934 267 IEMLEAGHSPNVTTF-VGLVDGLCRERGVEKAQSVIATLKEKGFLVN--DKAVREFLDKKAPFSSS 329 (344)
Q Consensus 267 ~~M~~~gv~pd~~ty-~~lL~a~~~~G~~e~a~~l~~~M~~~Gi~p~--~~~~~~Ll~~yak~g~~ 329 (344)
+--... -+|...| ...++-+...++-..++-+|+.....++.++ ..+|..+|+-=+..|+.
T Consensus 425 eLGLkk--f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL 488 (656)
T KOG1914|consen 425 ELGLKK--FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDL 488 (656)
T ss_pred HHHHHh--cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccH
Confidence 864432 1244443 4677777888998999999999998876665 47888888877777763
No 124
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.63 E-value=0.21 Score=47.74 Aligned_cols=129 Identities=13% Similarity=0.077 Sum_probs=105.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHHc
Q 047934 178 AMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYN-LLIQGLYKC 256 (344)
Q Consensus 178 tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn-~LI~ay~k~ 256 (344)
-|-.+|.+.|.+.+|...|+.-.+. .|-+.||--|-.+|.+....+.|+.+|.+-.+. -|-.+||- -+...+-..
T Consensus 228 Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 228 QMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHHH
Confidence 3788999999999999999876665 467788889999999999999999999987664 45555554 566667778
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCcc
Q 047934 257 NKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRERGVEKAQSVIATLKEKGFLV 311 (344)
Q Consensus 257 g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~~e~a~~l~~~M~~~Gi~p 311 (344)
++.++|.+++.+..+.. ..++....++-.+|.-.++.|.|...+..+...|+.-
T Consensus 304 ~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~s 357 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQS 357 (478)
T ss_pred HhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCC
Confidence 99999999999987753 3366677777788888899999999999999999873
No 125
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=95.51 E-value=0.97 Score=36.97 Aligned_cols=102 Identities=17% Similarity=0.205 Sum_probs=56.3
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHH
Q 047934 182 GLCKDGLIQEAMKLFGLMREKGTIPE--VVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPN----AFSYNLLIQGLYK 255 (344)
Q Consensus 182 ~~~k~g~~~~A~~lf~~M~~~g~~pd--~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd----~~tyn~LI~ay~k 255 (344)
++-..|+.++|..+|+.-...|.... ...+-.+-..|...|++++|..+|+...... |+ ......+-.++..
T Consensus 10 a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al~L~~ 87 (120)
T PF12688_consen 10 AHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLALALYN 87 (120)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHHH
Confidence 34456677777777777666665443 2344455556666677777777777665541 22 1222223335556
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 047934 256 CNKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLC 289 (344)
Q Consensus 256 ~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~ 289 (344)
.|+.++|++.+-..... +...|.--|..|+
T Consensus 88 ~gr~~eAl~~~l~~la~----~~~~y~ra~~~ya 117 (120)
T PF12688_consen 88 LGRPKEALEWLLEALAE----TLPRYRRAIRFYA 117 (120)
T ss_pred CCCHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 67777777666554432 3334554444443
No 126
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=95.41 E-value=0.24 Score=50.22 Aligned_cols=167 Identities=16% Similarity=0.112 Sum_probs=118.0
Q ss_pred CCCHHHHHHHHHHHHH--CCCCCCHHHHHHH----------------------------------HHHcCCHHHHHHHHH
Q 047934 154 SEPPQEADEIFKKMKE--TGLIPNAVAMLDG----------------------------------LCKDGLIQEAMKLFG 197 (344)
Q Consensus 154 sg~~~~A~~lf~~M~~--~gi~p~~~tli~~----------------------------------~~k~g~~~~A~~lf~ 197 (344)
.|+..+|++.|...-. .-.-|-|..+=.. |.+.+..+.|.++|.
T Consensus 325 i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~ 404 (611)
T KOG1173|consen 325 IGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFK 404 (611)
T ss_pred hcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHH
Confidence 5789999999987543 3345556532222 333456666666665
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 047934 198 LMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQSN--GIA----PNAFSYNLLIQGLYKCNKLEEAVEYCIEMLE 271 (344)
Q Consensus 198 ~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~--gi~----pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~ 271 (344)
+.... .+-|+.+.+-+=-..-..+.+.+|...|+..... .+. .-..+++.|=.+|-+.+..++|+..|++-..
T Consensus 405 ~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~ 483 (611)
T KOG1173|consen 405 QALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALL 483 (611)
T ss_pred HHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHH
Confidence 54432 2335666666666666678889999998877632 111 1344678888899999999999999999876
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCcccHHHHHHHHhccC
Q 047934 272 AGHSPNVTTFVGLVDGLCRERGVEKAQSVIATLKEKGFLVNDKAVREFLDKKA 324 (344)
Q Consensus 272 ~gv~pd~~ty~~lL~a~~~~G~~e~a~~l~~~M~~~Gi~p~~~~~~~Ll~~ya 324 (344)
.. .-|..|+.++--.|...|+++.|.+.|.... .+.|+..+...++..+.
T Consensus 484 l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 484 LS-PKDASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPDNIFISELLKLAI 533 (611)
T ss_pred cC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCccHHHHHHHHHHH
Confidence 53 4488899999999999999999999998744 56888877777776544
No 127
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.38 E-value=0.19 Score=41.80 Aligned_cols=74 Identities=16% Similarity=0.251 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----cCCCCCHHHHH
Q 047934 208 VVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLE-----AGHSPNVTTFV 282 (344)
Q Consensus 208 ~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~-----~gv~pd~~ty~ 282 (344)
..+...++..+...|++++|..+...+.... +-|...|..+|.+|...|+..+|.++|+++.. .|+.|+..|-.
T Consensus 62 ~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 62 LDALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 3455777888889999999999999998763 34788999999999999999999999998753 49999887744
No 128
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.28 E-value=1.1 Score=36.85 Aligned_cols=111 Identities=14% Similarity=0.115 Sum_probs=77.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 047934 176 AVAMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYK 255 (344)
Q Consensus 176 ~~tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k 255 (344)
...+|..+...+....+..+++.+...+. .+...+|.+|..|++... ++....+.. . .+......++..|-+
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~~-~~ll~~l~~---~---~~~yd~~~~~~~c~~ 81 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYDP-QKEIERLDN---K---SNHYDIEKVGKLCEK 81 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHCH-HHHHHHHHh---c---cccCCHHHHHHHHHH
Confidence 45688888888999999999999888874 688899999999998743 444444442 1 234445558888888
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHH
Q 047934 256 CNKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRE-RGVEKAQSVIAT 303 (344)
Q Consensus 256 ~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~-G~~e~a~~l~~~ 303 (344)
.+.++++.-++.++... ...+..+... ++.+.|.+++..
T Consensus 82 ~~l~~~~~~l~~k~~~~---------~~Al~~~l~~~~d~~~a~~~~~~ 121 (140)
T smart00299 82 AKLYEEAVELYKKDGNF---------KDAIVTLIEHLGNYEKAIEYFVK 121 (140)
T ss_pred cCcHHHHHHHHHhhcCH---------HHHHHHHHHcccCHHHHHHHHHh
Confidence 88888888888776432 2233333333 677777776664
No 129
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.27 E-value=0.51 Score=47.25 Aligned_cols=146 Identities=18% Similarity=0.150 Sum_probs=96.5
Q ss_pred CCHHHHHHHHHHHHHCCCCCC-HHHHHHHH---HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 047934 155 EPPQEADEIFKKMKETGLIPN-AVAMLDGL---CKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRI 230 (344)
Q Consensus 155 g~~~~A~~lf~~M~~~gi~p~-~~tli~~~---~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~v 230 (344)
+++++|..=|++..+- .|+ ..+.|.-| .+.+.+++++..|++.+++ ++--+.+||-.-..+...++++.|.+.
T Consensus 408 ~q~e~A~aDF~Kai~L--~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~ 484 (606)
T KOG0547|consen 408 QQYEEAIADFQKAISL--DPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQ 484 (606)
T ss_pred HHHHHHHHHHHHHhhc--ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHH
Confidence 3555666666555432 222 11333333 3567889999999987765 666778888888889999999999999
Q ss_pred HHHHHHCC-----CCCCHHHH--HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 047934 231 FRKMQSNG-----IAPNAFSY--NLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRERGVEKAQSVIAT 303 (344)
Q Consensus 231 f~~M~~~g-----i~pd~~ty--n~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~~e~a~~l~~~ 303 (344)
|+...+.. +-.+...+ -+++-.- -.+++..|..++.+-.+.. .-....|..|-..-...|++++|.++|+.
T Consensus 485 YD~ai~LE~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~D-pkce~A~~tlaq~~lQ~~~i~eAielFEk 562 (606)
T KOG0547|consen 485 YDKAIELEPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELD-PKCEQAYETLAQFELQRGKIDEAIELFEK 562 (606)
T ss_pred HHHHHhhccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccC-chHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 98876641 11111111 1222111 2378888888888776642 11456788888888999999999999997
Q ss_pred HH
Q 047934 304 LK 305 (344)
Q Consensus 304 M~ 305 (344)
-.
T Consensus 563 sa 564 (606)
T KOG0547|consen 563 SA 564 (606)
T ss_pred HH
Confidence 54
No 130
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=95.25 E-value=0.87 Score=38.86 Aligned_cols=98 Identities=12% Similarity=0.046 Sum_probs=72.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 047934 207 EVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAP--NAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTFVGL 284 (344)
Q Consensus 207 d~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~p--d~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty~~l 284 (344)
-...|..+...+...|++++|...|+........+ ...+|..+-..|...|+.++|++.+++..... .....++..+
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~l 112 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHH
Confidence 34566777777888999999999999987653222 23578889999999999999999999887642 2234455555
Q ss_pred HHHHH-------HcCCHHHHHHHHHHHH
Q 047934 285 VDGLC-------RERGVEKAQSVIATLK 305 (344)
Q Consensus 285 L~a~~-------~~G~~e~a~~l~~~M~ 305 (344)
...+. ..|++++|...+++..
T Consensus 113 a~i~~~~~~~~~~~g~~~~A~~~~~~a~ 140 (168)
T CHL00033 113 AVICHYRGEQAIEQGDSEIAEAWFDQAA 140 (168)
T ss_pred HHHHHHhhHHHHHcccHHHHHHHHHHHH
Confidence 55565 7788887777766543
No 131
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=95.25 E-value=1.6 Score=46.66 Aligned_cols=132 Identities=12% Similarity=0.133 Sum_probs=85.5
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH--HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 047934 154 SEPPQEADEIFKKMKETGLIPNAVAMLDGLC--KDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRIF 231 (344)
Q Consensus 154 sg~~~~A~~lf~~M~~~gi~p~~~tli~~~~--k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf 231 (344)
++++.+|......+..+--.....-++.++. +.|+.++|..+++.....+.. |..|..++-.+|-+.+..++|..+|
T Consensus 22 ~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Y 100 (932)
T KOG2053|consen 22 SSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLY 100 (932)
T ss_pred hHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHHH
Confidence 5678888888887665432212334555554 678888888888776655444 8888888999999999999999998
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 047934 232 RKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLC 289 (344)
Q Consensus 232 ~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~ 289 (344)
++.... -|+..-...+..+|++.+.+.+-.+.--+|-+ .+.-+...|-++++-..
T Consensus 101 e~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slil 155 (932)
T KOG2053|consen 101 ERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVISLIL 155 (932)
T ss_pred HHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHHH
Confidence 887654 56666667777778877766543333333322 12223444444444443
No 132
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=95.21 E-value=1.4 Score=44.66 Aligned_cols=165 Identities=14% Similarity=0.141 Sum_probs=120.9
Q ss_pred HHHHHHHHHHHHHC-CCCCC--HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Q 047934 157 PQEADEIFKKMKET-GLIPN--AVAMLDGLCKDGLIQEAMKLFGLMREKGTIP-EVVIYTAVVDGFCKAQKFDDAKRIFR 232 (344)
Q Consensus 157 ~~~A~~lf~~M~~~-gi~p~--~~tli~~~~k~g~~~~A~~lf~~M~~~g~~p-d~~tyn~LI~ay~k~g~~e~A~~vf~ 232 (344)
.+....+++++... .+.|+ +..+|...-+..-++.|..+|....+.+..+ ++++++++|.-||. ++.+-|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHH
Confidence 44444555554432 33343 4468888888999999999999999988666 89999999998875 56788999998
Q ss_pred HHHHCCCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--
Q 047934 233 KMQSNGIAPNAFSY-NLLIQGLYKCNKLEEAVEYCIEMLEAGHSPN--VTTFVGLVDGLCRERGVEKAQSVIATLKEK-- 307 (344)
Q Consensus 233 ~M~~~gi~pd~~ty-n~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd--~~ty~~lL~a~~~~G~~e~a~~l~~~M~~~-- 307 (344)
.=.+. -+|...| ...++-+...++-..|..+|++....++.|| ...|..+|+-=...|++..+.++-+.+...
T Consensus 426 LGLkk--f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 426 LGLKK--FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred HHHHh--cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence 64332 1244444 5788888899999999999999998877666 467999999999999999999988876543
Q ss_pred -CCcccHHHHHHHHhccC
Q 047934 308 -GFLVNDKAVREFLDKKA 324 (344)
Q Consensus 308 -Gi~p~~~~~~~Ll~~ya 324 (344)
...+....-..+++.|.
T Consensus 504 ~~qe~~~~~~~~~v~RY~ 521 (656)
T KOG1914|consen 504 ADQEYEGNETALFVDRYG 521 (656)
T ss_pred hhhcCCCChHHHHHHHHh
Confidence 13333334445555544
No 133
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=95.17 E-value=0.88 Score=39.06 Aligned_cols=86 Identities=12% Similarity=0.086 Sum_probs=65.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 047934 207 EVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPN--AFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTFVGL 284 (344)
Q Consensus 207 d~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd--~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty~~l 284 (344)
....|..+-..|...|++++|...|++..+....+. ...|..+-..|.+.|++++|...+.+..... .-+...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 455677788888899999999999999876533222 4678899999999999999999999987742 1245556666
Q ss_pred HHHHHHcCC
Q 047934 285 VDGLCRERG 293 (344)
Q Consensus 285 L~a~~~~G~ 293 (344)
...+...|+
T Consensus 113 g~~~~~~g~ 121 (172)
T PRK02603 113 AVIYHKRGE 121 (172)
T ss_pred HHHHHHcCC
Confidence 666666665
No 134
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=94.97 E-value=1.3 Score=44.34 Aligned_cols=181 Identities=14% Similarity=0.141 Sum_probs=124.6
Q ss_pred CCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 047934 154 SEPPQEADEIFKKMKETGLIPN----AVAMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKR 229 (344)
Q Consensus 154 sg~~~~A~~lf~~M~~~gi~p~----~~tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~ 229 (344)
+..+-.|..||++.... -|- |.-.+..=-..|++.-|.++|+.-.+ ..|+...|++.|+.=.+-..++.|+.
T Consensus 120 nk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~ 195 (677)
T KOG1915|consen 120 NKQVNHARNVWDRAVTI--LPRVDQLWYKYIYMEEMLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARS 195 (677)
T ss_pred hhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHHHHhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHH
Confidence 44677899999886642 332 33345555567899999999987655 47999999999999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 047934 230 IFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEA-GH-SPNVTTFVGLVDGLCRERGVEKAQSVIATLKEK 307 (344)
Q Consensus 230 vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~-gv-~pd~~ty~~lL~a~~~~G~~e~a~~l~~~M~~~ 307 (344)
+++...-. .|++.+|--...-=-++|....|..+|+...+. |- ..+...|+++..-=.++..++.|.-++....++
T Consensus 196 IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~ 273 (677)
T KOG1915|consen 196 IYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH 273 (677)
T ss_pred HHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99998764 599999998888888999999999999986653 21 112233333333334567788899898887765
Q ss_pred CC-cccHHHHHHHHhccCCCChH--HHHHHhcCccC
Q 047934 308 GF-LVNDKAVREFLDKKAPFSSS--VWEAIFGKKTL 340 (344)
Q Consensus 308 Gi-~p~~~~~~~Ll~~yak~g~~--~W~all~~~~~ 340 (344)
-= .-....|..++.-=-++|+. .-++++|+-++
T Consensus 274 ~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~ 309 (677)
T KOG1915|consen 274 IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKF 309 (677)
T ss_pred cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhh
Confidence 11 11244555555433344432 24455555443
No 135
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=94.89 E-value=1.2 Score=39.63 Aligned_cols=158 Identities=13% Similarity=0.043 Sum_probs=80.5
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCCHH-----HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC---
Q 047934 152 PISEPPQEADEIFKKMKETGLIPNAV-----AMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQK--- 223 (344)
Q Consensus 152 ~~sg~~~~A~~lf~~M~~~gi~p~~~-----tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~--- 223 (344)
+..|++++|.+.|+++...--...+. .+..++-+.|++++|...|+.+.+.--.....-+.-.+.+.+....
T Consensus 16 ~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~ 95 (203)
T PF13525_consen 16 LQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPG 95 (203)
T ss_dssp HHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCcc
Confidence 44789999999999998753221222 4788899999999999999998876322222333333333332211
Q ss_pred ----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 047934 224 ----------FDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRERG 293 (344)
Q Consensus 224 ----------~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~ 293 (344)
..+|.. .+..+|.-|=......+|...+..+... =...--.+..-|.+.|.
T Consensus 96 ~~~~~~D~~~~~~A~~---------------~~~~li~~yP~S~y~~~A~~~l~~l~~~----la~~e~~ia~~Y~~~~~ 156 (203)
T PF13525_consen 96 ILRSDRDQTSTRKAIE---------------EFEELIKRYPNSEYAEEAKKRLAELRNR----LAEHELYIARFYYKRGK 156 (203)
T ss_dssp HH-TT---HHHHHHHH---------------HHHHHHHH-TTSTTHHHHHHHHHHHHHH----HHHHHHHHHHHHHCTT-
T ss_pred chhcccChHHHHHHHH---------------HHHHHHHHCcCchHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHccc
Confidence 122333 3444555555555555555444444321 00001124444555666
Q ss_pred HHHHHHHHHHHHHC--CCcccHHHHHHHHhccCCCCh
Q 047934 294 VEKAQSVIATLKEK--GFLVNDKAVREFLDKKAPFSS 328 (344)
Q Consensus 294 ~e~a~~l~~~M~~~--Gi~p~~~~~~~Ll~~yak~g~ 328 (344)
+..|..-++.+.+. +..-.......++..|-+.|.
T Consensus 157 y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~ 193 (203)
T PF13525_consen 157 YKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGL 193 (203)
T ss_dssp HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCC
Confidence 66666666655554 222223344445555555544
No 136
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=94.86 E-value=0.8 Score=43.49 Aligned_cols=138 Identities=14% Similarity=0.207 Sum_probs=93.6
Q ss_pred HHHHHHHHcCC-----HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH--cC----CHHHHHHHHHHHHHCC---CCCCH
Q 047934 178 AMLDGLCKDGL-----IQEAMKLFGLMREKGTIPEVVIYTAVVDGFCK--AQ----KFDDAKRIFRKMQSNG---IAPNA 243 (344)
Q Consensus 178 tli~~~~k~g~-----~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k--~g----~~e~A~~vf~~M~~~g---i~pd~ 243 (344)
++...++-.+. +++.+.+++.|.+.|++-+..+|-+....... .. ....|..+|+.|++.- ..++.
T Consensus 62 ~la~~l~~~~~~p~~~~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D 141 (297)
T PF13170_consen 62 ILAALLDISFEDPEEAFKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPED 141 (297)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccc
Confidence 45555555554 45677799999999999998888664444333 22 2467999999999863 25677
Q ss_pred HHHHHHHHHHHHcCCH----HHHHHHHHHHHHcCCCCC-H-HHHHHHHHHHHHcCC--HHHHHHHHHHHHHCCCcccHHH
Q 047934 244 FSYNLLIQGLYKCNKL----EEAVEYCIEMLEAGHSPN-V-TTFVGLVDGLCRERG--VEKAQSVIATLKEKGFLVNDKA 315 (344)
Q Consensus 244 ~tyn~LI~ay~k~g~~----~~A~~lf~~M~~~gv~pd-~-~ty~~lL~a~~~~G~--~e~a~~l~~~M~~~Gi~p~~~~ 315 (344)
.++.+|+.. ...+. +.+..+|+.+...|+... . ...+.+|..+..... +..+.++++.+.+.|+++....
T Consensus 142 ~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~ 219 (297)
T PF13170_consen 142 YPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMH 219 (297)
T ss_pred hhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCcccccc
Confidence 888888776 44443 567888888988887553 3 333444444332222 5688999999999999876555
Q ss_pred HH
Q 047934 316 VR 317 (344)
Q Consensus 316 ~~ 317 (344)
|.
T Consensus 220 yp 221 (297)
T PF13170_consen 220 YP 221 (297)
T ss_pred cc
Confidence 44
No 137
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=94.75 E-value=0.68 Score=49.30 Aligned_cols=146 Identities=16% Similarity=0.190 Sum_probs=109.2
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 047934 181 DGLCKDGLIQEAMKLFGLMREKG--TIPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNK 258 (344)
Q Consensus 181 ~~~~k~g~~~~A~~lf~~M~~~g--~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~ 258 (344)
.++......+.+..+.....+.. ..-++..|--+-++|...|++.+|..+|..+.....--+.+.|--+-.+|-..|.
T Consensus 385 icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e 464 (895)
T KOG2076|consen 385 ICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGE 464 (895)
T ss_pred hhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhh
Confidence 33444444444444444455554 3346678899999999999999999999999887666678899999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHH--------HHCCCcccHHHHHHHHhccCCCCh
Q 047934 259 LEEAVEYCIEMLEAGHSPN-VTTFVGLVDGLCRERGVEKAQSVIATL--------KEKGFLVNDKAVREFLDKKAPFSS 328 (344)
Q Consensus 259 ~~~A~~lf~~M~~~gv~pd-~~ty~~lL~a~~~~G~~e~a~~l~~~M--------~~~Gi~p~~~~~~~Ll~~yak~g~ 328 (344)
.++|.+.|+..... .|+ ...-..|-+.+-+.|+.|+|.+++..| ...++.|+........++|...|.
T Consensus 465 ~e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk 541 (895)
T KOG2076|consen 465 YEEAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGK 541 (895)
T ss_pred HHHHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhh
Confidence 99999999998875 333 333445666677899999999999985 344577777777777777777665
No 138
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=94.74 E-value=0.61 Score=44.77 Aligned_cols=107 Identities=13% Similarity=0.175 Sum_probs=78.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 047934 178 AMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCN 257 (344)
Q Consensus 178 tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g 257 (344)
..|.-|...|....|.++-.++ .+ ||..-|-..|.+|++.++|++.+++-.. +-+.+-|-.++.+|.+.|
T Consensus 182 ~Ti~~li~~~~~k~A~kl~k~F---kv-~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~ 251 (319)
T PF04840_consen 182 DTIRKLIEMGQEKQAEKLKKEF---KV-PDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYG 251 (319)
T ss_pred HHHHHHHHCCCHHHHHHHHHHc---CC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCC
Confidence 4577777888888887776655 22 6888888888888888888887776432 225578888888888888
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 047934 258 KLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRERGVEKAQSVIATL 304 (344)
Q Consensus 258 ~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~~e~a~~l~~~M 304 (344)
..++|......+ ++..-+..|.++|++.+|.+.-.+.
T Consensus 252 ~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 252 NKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred CHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHHHHc
Confidence 888888877662 2255677778888888887665543
No 139
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=94.72 E-value=2.6 Score=38.90 Aligned_cols=126 Identities=15% Similarity=0.100 Sum_probs=95.0
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 047934 182 GLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEE 261 (344)
Q Consensus 182 ~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~ 261 (344)
.+...|+-+....+...... ...-|....+++.......|++.+|..+|.+...- -.+|-..|+.+=.+|-+.|++++
T Consensus 75 a~~~~G~a~~~l~~~~~~~~-~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~Gr~~~ 152 (257)
T COG5010 75 ALYLRGDADSSLAVLQKSAI-AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQLGRFDE 152 (257)
T ss_pred HHHhcccccchHHHHhhhhc-cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHccChhH
Confidence 33344555555554443222 23346667778999999999999999999998654 46688999999999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCc
Q 047934 262 AVEYCIEMLEAGHSPNVTTFVGLVDGLCRERGVEKAQSVIATLKEKGFL 310 (344)
Q Consensus 262 A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~~e~a~~l~~~M~~~Gi~ 310 (344)
|..-|.+..+.-. -+...++-|.-.+.-.|+.+.|..++......+-.
T Consensus 153 Ar~ay~qAl~L~~-~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a 200 (257)
T COG5010 153 ARRAYRQALELAP-NEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA 200 (257)
T ss_pred HHHHHHHHHHhcc-CCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC
Confidence 9999988777522 13455667777788889999999999988876554
No 140
>PLN02789 farnesyltranstransferase
Probab=94.71 E-value=4 Score=39.19 Aligned_cols=94 Identities=17% Similarity=0.117 Sum_probs=50.3
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 047934 188 LIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQK--FDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEY 265 (344)
Q Consensus 188 ~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~--~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~l 265 (344)
..++++.+++.+.+..-+ +..+|+-.--.+.+.+. .+++..+++.|.+..- -|...|+..--++.+.|.++++++.
T Consensus 87 ~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dp-kNy~AW~~R~w~l~~l~~~~eeL~~ 164 (320)
T PLN02789 87 DLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDA-KNYHAWSHRQWVLRTLGGWEDELEY 164 (320)
T ss_pred hHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhhhHHHHHHH
Confidence 456666666666654322 33445433333344443 2455666666655432 2556666666666666667777777
Q ss_pred HHHHHHcCCCCCHHHHHHH
Q 047934 266 CIEMLEAGHSPNVTTFVGL 284 (344)
Q Consensus 266 f~~M~~~gv~pd~~ty~~l 284 (344)
++++.+.... |...|+-.
T Consensus 165 ~~~~I~~d~~-N~sAW~~R 182 (320)
T PLN02789 165 CHQLLEEDVR-NNSAWNQR 182 (320)
T ss_pred HHHHHHHCCC-chhHHHHH
Confidence 7766665432 33444433
No 141
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=94.58 E-value=0.22 Score=35.26 Aligned_cols=53 Identities=23% Similarity=0.370 Sum_probs=25.4
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 047934 217 GFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEML 270 (344)
Q Consensus 217 ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~ 270 (344)
.+...|++++|..+|+.+.+.. .-+...|..+-.++...|++++|...|++..
T Consensus 6 ~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~ 58 (65)
T PF13432_consen 6 ALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERAL 58 (65)
T ss_dssp HHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444555555555555555443 1134444455555555555555555555544
No 142
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=94.57 E-value=1.6 Score=44.62 Aligned_cols=126 Identities=13% Similarity=0.120 Sum_probs=97.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 047934 179 MLDGLCKDGLIQEAMKLFGLMREKGTIPE-VVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCN 257 (344)
Q Consensus 179 li~~~~k~g~~~~A~~lf~~M~~~g~~pd-~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g 257 (344)
+-..|-..|+.++|+++.+...+. .|+ +..|.+--..|-+.|++++|.+.++..+..... |-..=+-.+..+.++|
T Consensus 200 lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~ 276 (517)
T PF12569_consen 200 LAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAG 276 (517)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCC
Confidence 345566889999999999988876 344 678888888899999999999999998876433 6677777888889999
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHH--------HHHHHHHHHcCCHHHHHHHHHHHHHC
Q 047934 258 KLEEAVEYCIEMLEAGHSPNVTTF--------VGLVDGLCRERGVEKAQSVIATLKEK 307 (344)
Q Consensus 258 ~~~~A~~lf~~M~~~gv~pd~~ty--------~~lL~a~~~~G~~e~a~~l~~~M~~~ 307 (344)
+.++|.+++......+..|-...+ ...-.+|.+.|++..|.+-|..+.+.
T Consensus 277 ~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 277 RIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKH 334 (517)
T ss_pred CHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 999999999988877654333221 33456677889888887777766553
No 143
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.47 E-value=0.69 Score=44.69 Aligned_cols=146 Identities=12% Similarity=0.134 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHHHCC----CCCCHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 047934 157 PQEADEIFKKMKETG----LIPNAVAMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRIFR 232 (344)
Q Consensus 157 ~~~A~~lf~~M~~~g----i~p~~~tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf~ 232 (344)
+.-|...|...-+.+ ..|-..+|.+.+.-...+++++-+++.++.-=..-|.+-|| +-.+++..|.+.+|+++|-
T Consensus 339 lKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~ 417 (557)
T KOG3785|consen 339 LKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFI 417 (557)
T ss_pred HHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHh
Confidence 555666665544443 33444578888888888888888887766543333444444 6778889999999999997
Q ss_pred HHHHCCCCCCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHC
Q 047934 233 KMQSNGIAPNAFSYN-LLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTF-VGLVDGLCRERGVEKAQSVIATLKEK 307 (344)
Q Consensus 233 ~M~~~gi~pd~~tyn-~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty-~~lL~a~~~~G~~e~a~~l~~~M~~~ 307 (344)
.+..-.++ |..+|- .|..+|.+++.++.|++++-.|...+ +..+. -.+..-|-+++.+--|-+.|++++..
T Consensus 418 ~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~---e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l 490 (557)
T KOG3785|consen 418 RISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNTPS---ERFSLLQLIANDCYKANEFYYAAKAFDELEIL 490 (557)
T ss_pred hhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCCch---hHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc
Confidence 76554444 566665 55678899999999998876664321 33332 34556688999999999999998875
No 144
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=94.44 E-value=1 Score=41.98 Aligned_cols=98 Identities=17% Similarity=0.138 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCCHHHH
Q 047934 208 VVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPN----AFSYNLLIQGLYKCNKLEEAVEYCIEMLEAG--HSPNVTTF 281 (344)
Q Consensus 208 ~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd----~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~g--v~pd~~ty 281 (344)
...|...+..+.+.|++++|...|+.+.+.- |+ ...+-.+-.+|...|++++|...|+.+...- -......+
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl 220 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM 220 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence 4567777777777899999999999998762 33 2456677888899999999999999998641 11223444
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHC
Q 047934 282 VGLVDGLCRERGVEKAQSVIATLKEK 307 (344)
Q Consensus 282 ~~lL~a~~~~G~~e~a~~l~~~M~~~ 307 (344)
-.+...+...|+.++|.++++.+.+.
T Consensus 221 ~klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 221 FKVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 44566677899999999999988765
No 145
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.40 E-value=1.2 Score=48.35 Aligned_cols=129 Identities=13% Similarity=0.156 Sum_probs=91.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 047934 179 MLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNK 258 (344)
Q Consensus 179 li~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~ 258 (344)
+-..+..++..++|+.+|+..- .+....+.||. ..+.++.|.+.-++.. ....|+.+-.+-.+.|.
T Consensus 1054 ia~iai~~~LyEEAF~ifkkf~-----~n~~A~~VLie---~i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~ 1119 (1666)
T KOG0985|consen 1054 IAEIAIENQLYEEAFAIFKKFD-----MNVSAIQVLIE---NIGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGL 1119 (1666)
T ss_pred HHHHHhhhhHHHHHHHHHHHhc-----ccHHHHHHHHH---HhhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCc
Confidence 4455566677788888887542 25666666666 3455666666655543 45678888888888888
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCcccHHHHHHHHhccCCCChH
Q 047934 259 LEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRERGVEKAQSVIATLKEKGFLVNDKAVREFLDKKAPFSSS 329 (344)
Q Consensus 259 ~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~~e~a~~l~~~M~~~Gi~p~~~~~~~Ll~~yak~g~~ 329 (344)
+.+|.+-|-+. -|...|.-+++.+.+.|.+++-.+.+...+++.-+|... +.||-+|++-+..
T Consensus 1120 v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl 1182 (1666)
T KOG0985|consen 1120 VKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRL 1182 (1666)
T ss_pred hHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchH
Confidence 88887765432 277888888888888898888888888888777766544 4677778877764
No 146
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=94.35 E-value=0.34 Score=50.68 Aligned_cols=108 Identities=15% Similarity=0.276 Sum_probs=71.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 047934 180 LDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKL 259 (344)
Q Consensus 180 i~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~ 259 (344)
|.+-..+..|.+|+.+++.+++... -.--|.-+-+.|+..|+++.|+++|.+-- .++-.|++|.++|.|
T Consensus 739 ieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccH
Confidence 4455556778888888888876633 23446777888899999999999886532 466778899999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 047934 260 EEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRERGVEKAQSV 300 (344)
Q Consensus 260 ~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~~e~a~~l 300 (344)
.+|.++-++. .|-+.....|.+-..-.-..|.+.+|.++
T Consensus 808 ~da~kla~e~--~~~e~t~~~yiakaedldehgkf~eaeql 846 (1636)
T KOG3616|consen 808 EDAFKLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQL 846 (1636)
T ss_pred HHHHHHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhhe
Confidence 9888875543 33333444454444444455555555444
No 147
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=94.14 E-value=1.1 Score=38.44 Aligned_cols=85 Identities=11% Similarity=0.063 Sum_probs=38.1
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 047934 183 LCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEA 262 (344)
Q Consensus 183 ~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A 262 (344)
+...|++++|..+|+.+..-.. -+..-|-.|=-+|-..|++++|...|........ -|...+-.+=.+|.+.|+.+.|
T Consensus 45 ly~~G~l~~A~~~f~~L~~~Dp-~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~lG~~~~A 122 (157)
T PRK15363 45 LMEVKEFAGAARLFQLLTIYDA-WSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLACDNVCYA 122 (157)
T ss_pred HHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHcCCHHHH
Confidence 3344555555555554443321 1222333333334444555555555555444332 2344444444455555555555
Q ss_pred HHHHHHH
Q 047934 263 VEYCIEM 269 (344)
Q Consensus 263 ~~lf~~M 269 (344)
.+.|+..
T Consensus 123 ~~aF~~A 129 (157)
T PRK15363 123 IKALKAV 129 (157)
T ss_pred HHHHHHH
Confidence 5555443
No 148
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=94.02 E-value=0.33 Score=34.28 Aligned_cols=58 Identities=19% Similarity=0.180 Sum_probs=47.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 047934 249 LIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRERGVEKAQSVIATLKEK 307 (344)
Q Consensus 249 LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~~e~a~~l~~~M~~~ 307 (344)
+-..+.+.|++++|.++|++..+.. .-+...+..+-..+...|++++|..+++.+.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3456889999999999999999875 226777888888899999999999999998753
No 149
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.02 E-value=2.2 Score=42.92 Aligned_cols=151 Identities=16% Similarity=0.113 Sum_probs=113.3
Q ss_pred CCCHHHHHHHHHHHHHCCCCC-C-HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 047934 154 SEPPQEADEIFKKMKETGLIP-N-AVAMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRIF 231 (344)
Q Consensus 154 sg~~~~A~~lf~~M~~~gi~p-~-~~tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf 231 (344)
+|+.-.|...|+......-.+ + +.-+-..|+...+.++....|....+..- -|..+|----.++.-.+++++|..=|
T Consensus 339 ~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp-~n~dvYyHRgQm~flL~q~e~A~aDF 417 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDP-ENPDVYYHRGQMRFLLQQYEEAIADF 417 (606)
T ss_pred cCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCC-CCCchhHhHHHHHHHHHHHHHHHHHH
Confidence 788888888888888765433 2 22356778888899999999988876542 24445544444455566889999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 047934 232 RKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRERGVEKAQSVIATLKEK 307 (344)
Q Consensus 232 ~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~~e~a~~l~~~M~~~ 307 (344)
++.....-+ ++..|--+--+..+.+.+++++..|++.++. +.-.+..|+..-..+...++++.|.+.++..++.
T Consensus 418 ~Kai~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L 491 (606)
T KOG0547|consen 418 QKAISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL 491 (606)
T ss_pred HHHhhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence 988765311 4567777777778899999999999998875 4456778888889999999999999999977653
No 150
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=93.87 E-value=2.3 Score=44.11 Aligned_cols=150 Identities=13% Similarity=0.099 Sum_probs=81.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC------CCCCCHHHHHHHHHH
Q 047934 179 MLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQSN------GIAPNAFSYNLLIQG 252 (344)
Q Consensus 179 li~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~------gi~pd~~tyn~LI~a 252 (344)
.|.-....+.++-+..+++...+- +...-+--|.-+++.+++++|-+.+...... .-+-+...|.-+-+-
T Consensus 144 yl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdl 219 (835)
T KOG2047|consen 144 YLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDL 219 (835)
T ss_pred HHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHH
Confidence 333333444444455555444432 3333455555556666666666665554322 112233445544444
Q ss_pred HHHcCCHHH---HHHHHHHHHHcCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCcccHHHHHHHHhccCCCC
Q 047934 253 LYKCNKLEE---AVEYCIEMLEAGHSPNV--TTFVGLVDGLCRERGVEKAQSVIATLKEKGFLVNDKAVREFLDKKAPFS 327 (344)
Q Consensus 253 y~k~g~~~~---A~~lf~~M~~~gv~pd~--~ty~~lL~a~~~~G~~e~a~~l~~~M~~~Gi~p~~~~~~~Ll~~yak~g 327 (344)
.+++-+.-. ...+++.+.. .-+|. ..|++|-+.|.+.|++++|..++++-...- .+..-|+.+.+.|+.+.
T Consensus 220 is~~p~~~~slnvdaiiR~gi~--rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FE 295 (835)
T KOG2047|consen 220 ISQNPDKVQSLNVDAIIRGGIR--RFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFE 295 (835)
T ss_pred HHhCcchhcccCHHHHHHhhcc--cCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHH
Confidence 444332221 1222222221 12343 358899999999999999999999877653 34556677777777766
Q ss_pred hHHHHHHhc
Q 047934 328 SSVWEAIFG 336 (344)
Q Consensus 328 ~~~W~all~ 336 (344)
...-.++++
T Consensus 296 E~~~~~~me 304 (835)
T KOG2047|consen 296 ESCVAAKME 304 (835)
T ss_pred HHHHHHHHh
Confidence 654444443
No 151
>PRK04841 transcriptional regulator MalT; Provisional
Probab=93.81 E-value=3.4 Score=44.81 Aligned_cols=154 Identities=13% Similarity=0.107 Sum_probs=101.3
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHcCCHHHHHHHHHHHHHc----CC-CCCHHHHHHHHHHHHH
Q 047934 153 ISEPPQEADEIFKKMKETGLIPNA-------VAMLDGLCKDGLIQEAMKLFGLMREK----GT-IPEVVIYTAVVDGFCK 220 (344)
Q Consensus 153 ~sg~~~~A~~lf~~M~~~gi~p~~-------~tli~~~~k~g~~~~A~~lf~~M~~~----g~-~pd~~tyn~LI~ay~k 220 (344)
..|++++|..++++..+.--..+. ..+-..+...|++++|...+.+.... |- .....++..+-..+..
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 478999999999987653111111 12344566789999999999887643 11 1123455666677888
Q ss_pred cCCHHHHHHHHHHHHH----CCCC--C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCC--HHHHHHHHHHHH
Q 047934 221 AQKFDDAKRIFRKMQS----NGIA--P-NAFSYNLLIQGLYKCNKLEEAVEYCIEMLEA--GHSPN--VTTFVGLVDGLC 289 (344)
Q Consensus 221 ~g~~e~A~~vf~~M~~----~gi~--p-d~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~--gv~pd--~~ty~~lL~a~~ 289 (344)
.|++++|...+++... .+.. + ....+..+-..+...|++++|...+++.... ...+. ..++..+-..+.
T Consensus 544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 623 (903)
T PRK04841 544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISL 623 (903)
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHH
Confidence 9999999999887654 2221 1 2334555566677789999999999887542 11122 233444555667
Q ss_pred HcCCHHHHHHHHHHHHH
Q 047934 290 RERGVEKAQSVIATLKE 306 (344)
Q Consensus 290 ~~G~~e~a~~l~~~M~~ 306 (344)
..|+.++|.+.+.....
T Consensus 624 ~~G~~~~A~~~l~~a~~ 640 (903)
T PRK04841 624 ARGDLDNARRYLNRLEN 640 (903)
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 88999999998888754
No 152
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=93.75 E-value=2.3 Score=34.75 Aligned_cols=103 Identities=17% Similarity=0.069 Sum_probs=74.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC---H-HHHHHHHHHHH
Q 047934 216 DGFCKAQKFDDAKRIFRKMQSNGIAPN--AFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPN---V-TTFVGLVDGLC 289 (344)
Q Consensus 216 ~ay~k~g~~e~A~~vf~~M~~~gi~pd--~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd---~-~ty~~lL~a~~ 289 (344)
.++-..|+.++|..+|++-.+.|.... ...+-.+-..|-..|++++|..+|++..... |+ . .....+-.++.
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHH
Confidence 345678999999999999999887755 3456677788889999999999999887652 33 1 11222334667
Q ss_pred HcCCHHHHHHHHHHHHHCCCcccHHHHHHHHhccC
Q 047934 290 RERGVEKAQSVIATLKEKGFLVNDKAVREFLDKKA 324 (344)
Q Consensus 290 ~~G~~e~a~~l~~~M~~~Gi~p~~~~~~~Ll~~ya 324 (344)
..|+.++|.+.+-.... ++...|.--|..|+
T Consensus 87 ~~gr~~eAl~~~l~~la----~~~~~y~ra~~~ya 117 (120)
T PF12688_consen 87 NLGRPKEALEWLLEALA----ETLPRYRRAIRFYA 117 (120)
T ss_pred HCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 88999999888876554 23346666666554
No 153
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=93.61 E-value=0.87 Score=47.58 Aligned_cols=144 Identities=13% Similarity=0.071 Sum_probs=98.4
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 047934 155 EPPQEADEIFKKMKETGLIPNAVAMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRIFRKM 234 (344)
Q Consensus 155 g~~~~A~~lf~~M~~~gi~p~~~tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M 234 (344)
|-...|..+|+++.- |.-+|.+|+..|...+|..+..+..+ -+||...|..|-+.......+++|.++++..
T Consensus 412 GitksAl~I~Erlem------w~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d~s~yEkawElsn~~ 483 (777)
T KOG1128|consen 412 GITKSALVIFERLEM------WDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLHDPSLYEKAWELSNYI 483 (777)
T ss_pred chHHHHHHHHHhHHH------HHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhccChHHHHHHHHHhhhh
Confidence 445555555555432 44588999999999999988877666 4689999999988877777778888877765
Q ss_pred HHC-----CC----------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHH
Q 047934 235 QSN-----GI----------------------APNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPN-VTTFVGLVD 286 (344)
Q Consensus 235 ~~~-----gi----------------------~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd-~~ty~~lL~ 286 (344)
..+ |. ..-..+|=.+=.++.++++++.|.+.|...... .|| ...|+.+-.
T Consensus 484 sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL--~Pd~~eaWnNls~ 561 (777)
T KOG1128|consen 484 SARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTL--EPDNAEAWNNLST 561 (777)
T ss_pred hHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhc--CCCchhhhhhhhH
Confidence 332 00 001123333334444566777777777765543 454 567888888
Q ss_pred HHHHcCCHHHHHHHHHHHHHCC
Q 047934 287 GLCRERGVEKAQSVIATLKEKG 308 (344)
Q Consensus 287 a~~~~G~~e~a~~l~~~M~~~G 308 (344)
+|.+.+.-.+|...+.+..+.+
T Consensus 562 ayi~~~~k~ra~~~l~EAlKcn 583 (777)
T KOG1128|consen 562 AYIRLKKKKRAFRKLKEALKCN 583 (777)
T ss_pred HHHHHhhhHHHHHHHHHHhhcC
Confidence 8888888888888888887765
No 154
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=93.56 E-value=2.3 Score=36.44 Aligned_cols=88 Identities=10% Similarity=-0.037 Sum_probs=71.0
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 047934 218 FCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRERGVEKA 297 (344)
Q Consensus 218 y~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~~e~a 297 (344)
+...|++++|..+|+.+..-... +..-|-.|=.+|-..|++.+|++.|........ -|...+-.+-.++...|+.+.|
T Consensus 45 ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~lG~~~~A 122 (157)
T PRK15363 45 LMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLACDNVCYA 122 (157)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHcCCHHHH
Confidence 45789999999999998775322 455667777778889999999999999887763 4677777788888999999999
Q ss_pred HHHHHHHHHC
Q 047934 298 QSVIATLKEK 307 (344)
Q Consensus 298 ~~l~~~M~~~ 307 (344)
++-|+..+..
T Consensus 123 ~~aF~~Ai~~ 132 (157)
T PRK15363 123 IKALKAVVRI 132 (157)
T ss_pred HHHHHHHHHH
Confidence 9999987765
No 155
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.51 E-value=0.8 Score=43.33 Aligned_cols=154 Identities=15% Similarity=0.101 Sum_probs=89.4
Q ss_pred CCCCCHHHHHHHHHHHHH-CCCCCCHH-HHHHHHHHcCCHHHHHHHHHHHHHcCCC-------------CCHHH------
Q 047934 152 PISEPPQEADEIFKKMKE-TGLIPNAV-AMLDGLCKDGLIQEAMKLFGLMREKGTI-------------PEVVI------ 210 (344)
Q Consensus 152 ~~sg~~~~A~~lf~~M~~-~gi~p~~~-tli~~~~k~g~~~~A~~lf~~M~~~g~~-------------pd~~t------ 210 (344)
|+.|+++.|.+-|.+..+ .|..|-.. .+-.+..+.|+.+.|+++..++.++|++ ||+..
T Consensus 155 ykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~ 234 (459)
T KOG4340|consen 155 YKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLV 234 (459)
T ss_pred eccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHH
Confidence 567777777777776554 45555222 3444555667777777777777777653 22211
Q ss_pred --HHHHHH-------HHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH
Q 047934 211 --YTAVVD-------GFCKAQKFDDAKRIFRKMQSN-GIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTT 280 (344)
Q Consensus 211 --yn~LI~-------ay~k~g~~e~A~~vf~~M~~~-gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~t 280 (344)
-.+++. .+.+.++++.|.+-+-+|.-+ ..+.|.+|...+.-.=+ .+++.+..+-+.-+....- --..|
T Consensus 235 lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~nP-fP~ET 312 (459)
T KOG4340|consen 235 LHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQNP-FPPET 312 (459)
T ss_pred HHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHHhcCC-CChHH
Confidence 122332 234557777777777777433 34556666654432222 2334444444444444322 24678
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 047934 281 FVGLVDGLCRERGVEKAQSVIATLKEK 307 (344)
Q Consensus 281 y~~lL~a~~~~G~~e~a~~l~~~M~~~ 307 (344)
|..++-.||+..-++.|-.++.+-...
T Consensus 313 FANlLllyCKNeyf~lAADvLAEn~~l 339 (459)
T KOG4340|consen 313 FANLLLLYCKNEYFDLAADVLAENAHL 339 (459)
T ss_pred HHHHHHHHhhhHHHhHHHHHHhhCcch
Confidence 888888888888888888887764443
No 156
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.48 E-value=0.17 Score=48.81 Aligned_cols=80 Identities=6% Similarity=0.105 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 047934 225 DDAKRIFRKMQSNGIAPNAFS-YNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRERGVEKAQSVIAT 303 (344)
Q Consensus 225 e~A~~vf~~M~~~gi~pd~~t-yn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~~e~a~~l~~~ 303 (344)
.-|.+.|...-+.+.+-|+.- -.+|.+++.-..++|+++..+......=..-|...|+ +..+++..|+..+|+++|-.
T Consensus 340 KiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~ 418 (557)
T KOG3785|consen 340 KIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIR 418 (557)
T ss_pred HHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhh
Confidence 344555544444433333322 1233333333444444444444444332222333332 34444445555555555544
Q ss_pred HH
Q 047934 304 LK 305 (344)
Q Consensus 304 M~ 305 (344)
+.
T Consensus 419 is 420 (557)
T KOG3785|consen 419 IS 420 (557)
T ss_pred hc
Confidence 33
No 157
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=93.43 E-value=1.4 Score=44.02 Aligned_cols=57 Identities=16% Similarity=0.119 Sum_probs=36.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 047934 178 AMLDGLCKDGLIQEAMKLFGLMREKGTIPEV----VIYTAVVDGFCKAQKFDDAKRIFRKMQS 236 (344)
Q Consensus 178 tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~----~tyn~LI~ay~k~g~~e~A~~vf~~M~~ 236 (344)
-+-.+|.+.|++++|+..|+...+. .|+. .+|..+-.+|++.|+.++|...+++..+
T Consensus 80 NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 80 NLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4566666777777777777665543 2442 3466677777777777777777766665
No 158
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.28 E-value=1.1 Score=45.84 Aligned_cols=108 Identities=18% Similarity=0.303 Sum_probs=62.2
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHH----HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH--HHHHH--HcCCHH
Q 047934 154 SEPPQEADEIFKKMKETGLIPNAVA----MLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAV--VDGFC--KAQKFD 225 (344)
Q Consensus 154 sg~~~~A~~lf~~M~~~gi~p~~~t----li~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~L--I~ay~--k~g~~e 225 (344)
+|++++|.+..+.+...+ |+..+ =+.++.+.+.+++|+.+.+. .+ -..+++.. =.+|| +.+..|
T Consensus 25 ~~e~e~a~k~~~Kil~~~--pdd~~a~~cKvValIq~~ky~~ALk~ikk---~~---~~~~~~~~~fEKAYc~Yrlnk~D 96 (652)
T KOG2376|consen 25 NGEYEEAVKTANKILSIV--PDDEDAIRCKVVALIQLDKYEDALKLIKK---NG---ALLVINSFFFEKAYCEYRLNKLD 96 (652)
T ss_pred chHHHHHHHHHHHHHhcC--CCcHhhHhhhHhhhhhhhHHHHHHHHHHh---cc---hhhhcchhhHHHHHHHHHcccHH
Confidence 567777777777777543 44332 35555666777777744332 11 11222222 34444 556777
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 047934 226 DAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAG 273 (344)
Q Consensus 226 ~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~g 273 (344)
+|...++..... |..+-..--..+.+.+++++|+++++.+.+.+
T Consensus 97 ealk~~~~~~~~----~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~ 140 (652)
T KOG2376|consen 97 EALKTLKGLDRL----DDKLLELRAQVLYRLERYDEALDIYQHLAKNN 140 (652)
T ss_pred HHHHHHhccccc----chHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 777777633222 33355555666677777777777777776653
No 159
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=93.20 E-value=0.39 Score=50.23 Aligned_cols=141 Identities=18% Similarity=0.206 Sum_probs=85.5
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 047934 154 SEPPQEADEIFKKMKETGLIPNAV-AMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRIFR 232 (344)
Q Consensus 154 sg~~~~A~~lf~~M~~~gi~p~~~-tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf~ 232 (344)
...+.+|+.+++.+..+....-+. -+...|+..|+++-|.++|-+- ..++-.|+||.+.|+|++|.++-.
T Consensus 745 akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da~kla~ 815 (1636)
T KOG3616|consen 745 AKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAFKLAE 815 (1636)
T ss_pred hhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHHHHHHH
Confidence 346777777777777665543332 4678888899999999888542 345678899999999999988865
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH-------------HH------HHHc--CCCCC--HHHHHHHHHHHH
Q 047934 233 KMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYC-------------IE------MLEA--GHSPN--VTTFVGLVDGLC 289 (344)
Q Consensus 233 ~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf-------------~~------M~~~--gv~pd--~~ty~~lL~a~~ 289 (344)
+. .|-+.....|-+-..-+-+.|.+.+|.+++ ++ |... ...|| ..|-..+-.-|-
T Consensus 816 e~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e 893 (1636)
T KOG3616|consen 816 EC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELE 893 (1636)
T ss_pred Hh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHH
Confidence 54 333444555544444444444444443332 11 1110 01122 334455666667
Q ss_pred HcCCHHHHHHHHHHHH
Q 047934 290 RERGVEKAQSVIATLK 305 (344)
Q Consensus 290 ~~G~~e~a~~l~~~M~ 305 (344)
..|++..|.+-|-+.-
T Consensus 894 ~~g~lkaae~~flea~ 909 (1636)
T KOG3616|consen 894 AEGDLKAAEEHFLEAG 909 (1636)
T ss_pred hccChhHHHHHHHhhh
Confidence 7788888887776543
No 160
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=93.05 E-value=0.74 Score=45.77 Aligned_cols=117 Identities=15% Similarity=0.221 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH-HHHH
Q 047934 208 VVIYTAVVDGFCKAQKFDDAKRIFRKMQSNG-IAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTF-VGLV 285 (344)
Q Consensus 208 ~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~g-i~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty-~~lL 285 (344)
+.+|+.+|+..-+..-++.|+.+|.+..+.| +.+++..++++|.-|+. |+...|.++|+--... -||...| .-.+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 4677888888888888899999999998888 67888899999987764 7777888888764332 3455444 3466
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCccc--HHHHHHHHhccCCCCh
Q 047934 286 DGLCRERGVEKAQSVIATLKEKGFLVN--DKAVREFLDKKAPFSS 328 (344)
Q Consensus 286 ~a~~~~G~~e~a~~l~~~M~~~Gi~p~--~~~~~~Ll~~yak~g~ 328 (344)
.-+...++-+.|+.+|+.-+.+ +..+ ..+|..+|+-=++.|+
T Consensus 474 ~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~ 517 (660)
T COG5107 474 LFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGS 517 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcc
Confidence 6667788888888888844332 1111 3567777765555554
No 161
>PLN02789 farnesyltranstransferase
Probab=93.01 E-value=8.8 Score=36.80 Aligned_cols=166 Identities=11% Similarity=0.017 Sum_probs=109.8
Q ss_pred CHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHcCC--HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 047934 156 PPQEADEIFKKMKETGLIP--NAVAMLDGLCKDGL--IQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRIF 231 (344)
Q Consensus 156 ~~~~A~~lf~~M~~~gi~p--~~~tli~~~~k~g~--~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf 231 (344)
++++|+..++++.+.+-+. -|.---..+.+.|. .++++++++.+.+..- -|..+|+-.--++...|.++++++.+
T Consensus 87 ~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dp-kNy~AW~~R~w~l~~l~~~~eeL~~~ 165 (320)
T PLN02789 87 DLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDA-KNYHAWSHRQWVLRTLGGWEDELEYC 165 (320)
T ss_pred hHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 5789999999888765442 13322122334454 3678888888887643 37888988888888899999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHc---CCH----HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHHHHHHH
Q 047934 232 RKMQSNGIAPNAFSYNLLIQGLYKC---NKL----EEAVEYCIEMLEAGHSPNVTTFVGLVDGLCR----ERGVEKAQSV 300 (344)
Q Consensus 232 ~~M~~~gi~pd~~tyn~LI~ay~k~---g~~----~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~----~G~~e~a~~l 300 (344)
+++.+.... |...|+..--.+.+. |.. +++++...++.... .-|...|+-+-..+.. .+...+|.+.
T Consensus 166 ~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~ 243 (320)
T PLN02789 166 HQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSV 243 (320)
T ss_pred HHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHH
Confidence 999987544 666777665555444 222 45566665555432 2356667666666655 2345668888
Q ss_pred HHHHHHCCCcccHHHHHHHHhccCC
Q 047934 301 IATLKEKGFLVNDKAVREFLDKKAP 325 (344)
Q Consensus 301 ~~~M~~~Gi~p~~~~~~~Ll~~yak 325 (344)
+.+..+.+.. +......|++.|+.
T Consensus 244 ~~~~~~~~~~-s~~al~~l~d~~~~ 267 (320)
T PLN02789 244 CLEVLSKDSN-HVFALSDLLDLLCE 267 (320)
T ss_pred HHHhhcccCC-cHHHHHHHHHHHHh
Confidence 8887665433 56677788888875
No 162
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=92.97 E-value=1.6 Score=40.92 Aligned_cols=188 Identities=14% Similarity=0.098 Sum_probs=114.9
Q ss_pred hhcccccCCCCCCCCCHHHHHHHHHHHHHCC--CC-CCHH--H--HHHHHHHcCCHHHHHHHHHHHHH----cCCCC-CH
Q 047934 141 QRQEQKPNRNEPISEPPQEADEIFKKMKETG--LI-PNAV--A--MLDGLCKDGLIQEAMKLFGLMRE----KGTIP-EV 208 (344)
Q Consensus 141 ~~~y~~~~~~~~~sg~~~~A~~lf~~M~~~g--i~-p~~~--t--li~~~~k~g~~~~A~~lf~~M~~----~g~~p-d~ 208 (344)
...|.+....|...+++++|.+.|....+-. .. +... + -...+.+..++++|.+.++...+ .|-.. =.
T Consensus 35 a~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~~~~~Ai~~~~~A~~~y~~~G~~~~aA 114 (282)
T PF14938_consen 35 ADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKGDPDEAIECYEKAIEIYREAGRFSQAA 114 (282)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHCT-HHHHH
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 3455555555555788999999998765421 11 1111 1 23333444588888888876543 23211 13
Q ss_pred HHHHHHHHHHHHc-CCHHHHHHHHHHHHH----CCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-----CC
Q 047934 209 VIYTAVVDGFCKA-QKFDDAKRIFRKMQS----NGIAP-NAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHS-----PN 277 (344)
Q Consensus 209 ~tyn~LI~ay~k~-g~~e~A~~vf~~M~~----~gi~p-d~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~-----pd 277 (344)
.++..+-..|-.. |++++|.+.|.+..+ .|-.- -..++.-+...+++.|++++|.++|++....-+. .+
T Consensus 115 ~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~ 194 (282)
T PF14938_consen 115 KCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYS 194 (282)
T ss_dssp HHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchh
Confidence 4666777778787 899999999987654 22111 1345667888899999999999999998875332 22
Q ss_pred HH-HHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCccc--HHHHHHHHhccCCCCh
Q 047934 278 VT-TFVGLVDGLCRERGVEKAQSVIATLKEK--GFLVN--DKAVREFLDKKAPFSS 328 (344)
Q Consensus 278 ~~-ty~~lL~a~~~~G~~e~a~~l~~~M~~~--Gi~p~--~~~~~~Ll~~yak~g~ 328 (344)
.. .|...+-.+...||...|.+.++..... ++..+ ......||++|-....
T Consensus 195 ~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~ 250 (282)
T PF14938_consen 195 AKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDV 250 (282)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-C
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCH
Confidence 22 2333344556689999999999998754 45444 5677777877665443
No 163
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=92.95 E-value=0.39 Score=35.27 Aligned_cols=60 Identities=23% Similarity=0.333 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc----CC-CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 047934 245 SYNLLIQGLYKCNKLEEAVEYCIEMLEA----GH-SPN-VTTFVGLVDGLCRERGVEKAQSVIATL 304 (344)
Q Consensus 245 tyn~LI~ay~k~g~~~~A~~lf~~M~~~----gv-~pd-~~ty~~lL~a~~~~G~~e~a~~l~~~M 304 (344)
+|+.+-..|...|++++|++.|++..+. |- .|+ ..++..+-..|...|+.++|.+++++.
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4555555666666666666666554432 10 111 334555555556666666666666554
No 164
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=92.94 E-value=4.4 Score=33.96 Aligned_cols=67 Identities=16% Similarity=0.148 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCc
Q 047934 243 AFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRERGVEKAQSVIATLKEKGFL 310 (344)
Q Consensus 243 ~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~~e~a~~l~~~M~~~Gi~ 310 (344)
.......++.+.+.|.-|.-.++..++.. .-+++......+-.||.+.|+..++.+++.+.-++|++
T Consensus 86 se~vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 86 SEYVDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp -HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 34456677788888888888888888775 34678888889999999999999999999999999986
No 165
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=92.94 E-value=2.7 Score=45.68 Aligned_cols=129 Identities=10% Similarity=0.062 Sum_probs=87.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 047934 178 AMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCN 257 (344)
Q Consensus 178 tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g 257 (344)
++-.+|-+.|+.++|.++|+++.+.. .-|..+.|-+-..|+.. ++++|++++.+.... |...+
T Consensus 121 ~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~---------------~i~~k 183 (906)
T PRK14720 121 TLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR---------------FIKKK 183 (906)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH---------------HHhhh
Confidence 67788888899999999999888876 45788888888888888 888888888776543 33344
Q ss_pred CHHHHHHHHHHHHHc-------------------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCcccHHHHHH
Q 047934 258 KLEEAVEYCIEMLEA-------------------GHSPNVTTFVGLVDGLCRERGVEKAQSVIATLKEKGFLVNDKAVRE 318 (344)
Q Consensus 258 ~~~~A~~lf~~M~~~-------------------gv~pd~~ty~~lL~a~~~~G~~e~a~~l~~~M~~~Gi~p~~~~~~~ 318 (344)
++..+.+++.++... |..--..++--+-..|-...+++++.+++..+.+..=. |......
T Consensus 184 q~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~ 262 (906)
T PRK14720 184 QYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK-NNKAREE 262 (906)
T ss_pred cchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHH
Confidence 444444444444332 22233444555556677777888888888888876433 4444555
Q ss_pred HHhccC
Q 047934 319 FLDKKA 324 (344)
Q Consensus 319 Ll~~ya 324 (344)
|++.|.
T Consensus 263 l~~~y~ 268 (906)
T PRK14720 263 LIRFYK 268 (906)
T ss_pred HHHHHH
Confidence 555444
No 166
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.93 E-value=7.8 Score=35.97 Aligned_cols=149 Identities=15% Similarity=0.145 Sum_probs=102.8
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHH--HHHHH--HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 047934 154 SEPPQEADEIFKKMKETGLIPNAV--AMLDG--LCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKR 229 (344)
Q Consensus 154 sg~~~~A~~lf~~M~~~gi~p~~~--tli~~--~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~ 229 (344)
.|..+.|...++.+..+= |... --+.| +-..|.+++|.++++.+.+.. +.|.++|--=|.+.-..|+--+|.+
T Consensus 65 ~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk 141 (289)
T KOG3060|consen 65 TGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIK 141 (289)
T ss_pred hcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHH
Confidence 566778888888877653 3221 11222 234688999999999988775 5677888766666666676667776
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHHc---CCHHHHHHHHHHHH
Q 047934 230 IFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTT-FVGLVDGLCRE---RGVEKAQSVIATLK 305 (344)
Q Consensus 230 vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~t-y~~lL~a~~~~---G~~e~a~~l~~~M~ 305 (344)
-+....+. +-.|...|.-+-+.|...|+++.|.-++++|.-. .|-... |..+-..+--. .+.+.+++++....
T Consensus 142 ~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~--~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~al 218 (289)
T KOG3060|consen 142 ELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLI--QPFNPLYFQRLAEVLYTQGGAENLELARKYYERAL 218 (289)
T ss_pred HHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 66665553 4459999999999999999999999999999864 444333 33344443333 35677888888777
Q ss_pred HCC
Q 047934 306 EKG 308 (344)
Q Consensus 306 ~~G 308 (344)
+..
T Consensus 219 kl~ 221 (289)
T KOG3060|consen 219 KLN 221 (289)
T ss_pred HhC
Confidence 653
No 167
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=92.88 E-value=9.4 Score=39.17 Aligned_cols=115 Identities=10% Similarity=0.003 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCC
Q 047934 189 IQEAMKLFGLMREKGTIPE-VVIYTAVVDGFCKAQ--------KFDDAKRIFRKMQSN-GIAPNAFSYNLLIQGLYKCNK 258 (344)
Q Consensus 189 ~~~A~~lf~~M~~~g~~pd-~~tyn~LI~ay~k~g--------~~e~A~~vf~~M~~~-gi~pd~~tyn~LI~ay~k~g~ 258 (344)
.+.|.++|++..+. .|+ ...|..+..+|.... .+..+.+........ ....+...|.++--.+...|+
T Consensus 358 ~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~ 435 (517)
T PRK10153 358 LNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGK 435 (517)
T ss_pred HHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCC
Confidence 67899999988875 344 344544433332221 123344444433332 233455778877666777899
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 047934 259 LEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRERGVEKAQSVIATLKEK 307 (344)
Q Consensus 259 ~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~~e~a~~l~~~M~~~ 307 (344)
+++|...+++..+.. |+...|..+-..|...|+.++|.+.+......
T Consensus 436 ~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 436 TDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred HHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 999999999988875 68889999999999999999999999987654
No 168
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.79 E-value=2.7 Score=39.91 Aligned_cols=173 Identities=12% Similarity=0.098 Sum_probs=108.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHH---HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Q 047934 150 NEPISEPPQEADEIFKKMKETGLIPNAVAMLDG---LCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDD 226 (344)
Q Consensus 150 ~~~~sg~~~~A~~lf~~M~~~gi~p~~~tli~~---~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~ 226 (344)
-.|.++++..+..+.++.+..|-. .++++. ..+.|..++|++-|....+-+---....||..+..|. .++.+.
T Consensus 121 IkYse~Dl~g~rsLveQlp~en~A---d~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~-~~qyas 196 (459)
T KOG4340|consen 121 IKYSEGDLPGSRSLVEQLPSENEA---DGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYS-SRQYAS 196 (459)
T ss_pred HhcccccCcchHHHHHhccCCCcc---chhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHh-hhhHHH
Confidence 346778888888888888765532 222222 2367888888888887766543335677887776664 467788
Q ss_pred HHHHHHHHHHCCCC-------------CCH---------------HHHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCCCC
Q 047934 227 AKRIFRKMQSNGIA-------------PNA---------------FSYNLLIQGLYKCNKLEEAVEYCIEMLE-AGHSPN 277 (344)
Q Consensus 227 A~~vf~~M~~~gi~-------------pd~---------------~tyn~LI~ay~k~g~~~~A~~lf~~M~~-~gv~pd 277 (344)
|++...++.++|++ ||+ ..+|.=...+.+.++.+.|.+-+-.|.- .....|
T Consensus 197 ALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elD 276 (459)
T KOG4340|consen 197 ALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELD 276 (459)
T ss_pred HHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCC
Confidence 88888888777652 221 2367777777888888888888888753 344567
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCcccHHHHHHHHhccCCCCh
Q 047934 278 VTTFVGLVDGLCRERGVEKAQSVIATLKEKGFLVNDKAVREFLDKKAPFSS 328 (344)
Q Consensus 278 ~~ty~~lL~a~~~~G~~e~a~~l~~~M~~~Gi~p~~~~~~~Ll~~yak~g~ 328 (344)
.+|...+--.-+ .++.-++.+-+..+.... ....+||.-|+-.|+|..-
T Consensus 277 PvTLHN~Al~n~-~~~p~~g~~KLqFLL~~n-PfP~ETFANlLllyCKNey 325 (459)
T KOG4340|consen 277 PVTLHNQALMNM-DARPTEGFEKLQFLLQQN-PFPPETFANLLLLYCKNEY 325 (459)
T ss_pred chhhhHHHHhcc-cCCccccHHHHHHHHhcC-CCChHHHHHHHHHHhhhHH
Confidence 777654432221 233444444444444442 2445677777777776553
No 169
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.70 E-value=4.3 Score=44.33 Aligned_cols=175 Identities=19% Similarity=0.197 Sum_probs=105.9
Q ss_pred hhHHhhhhhcCCCCCCCCCc----------ccccchhcccccCCCCCC---------CCCHHHHHHHHHHHHHCCCC---
Q 047934 116 ENFLDQFKLAIDKKPGNPQQ----------NESLGQRQEQKPNRNEPI---------SEPPQEADEIFKKMKETGLI--- 173 (344)
Q Consensus 116 h~~~~k~gl~~~~~v~~~l~----------~~~~~~~~y~~~~~~~~~---------sg~~~~A~~lf~~M~~~gi~--- 173 (344)
--++.|--|+.++|..+... ...+.-.+|-...++|-+ ++-+++|..+|+...-.+-.
T Consensus 1004 IELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf~~n~~A~~V 1083 (1666)
T KOG0985|consen 1004 IELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKFDMNVSAIQV 1083 (1666)
T ss_pred HHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHhcccHHHHHH
Confidence 34566777777777665433 222223344444455433 56789999998865322100
Q ss_pred --------------------C-CHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 047934 174 --------------------P-NAVAMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRIFR 232 (344)
Q Consensus 174 --------------------p-~~~tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf~ 232 (344)
| -|..+-.+-.+.|.+.+|.+-|- +. -|...|--+|+...+.|.+++..+.+.
T Consensus 1084 Lie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyi---ka---dDps~y~eVi~~a~~~~~~edLv~yL~ 1157 (1666)
T KOG0985|consen 1084 LIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYI---KA---DDPSNYLEVIDVASRTGKYEDLVKYLL 1157 (1666)
T ss_pred HHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHH---hc---CCcHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 0 01112222233333444433331 11 256778888888888888888888877
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 047934 233 KMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRERGVEKAQSVIATLK 305 (344)
Q Consensus 233 ~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~~e~a~~l~~~M~ 305 (344)
..+++.-+|.+. +.||-+|++.+++.+..+++ .-||......+-+-|...|.++.|.-++....
T Consensus 1158 MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vS 1221 (1666)
T KOG0985|consen 1158 MARKKVREPYID--SELIFAYAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNVS 1221 (1666)
T ss_pred HHHHhhcCccch--HHHHHHHHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHhh
Confidence 666665566554 46788888888877766554 24677777778888888888888887777654
No 170
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=92.67 E-value=0.89 Score=32.33 Aligned_cols=62 Identities=21% Similarity=0.171 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHH
Q 047934 243 AFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRER-GVEKAQSVIATLK 305 (344)
Q Consensus 243 ~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~G-~~e~a~~l~~~M~ 305 (344)
..+|..+=..+.+.|++++|+..|.+..+.. .-+...|..+-.+|...| +.++|.+.++...
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 4455555555666666666666666555542 113444555555555555 4566665555543
No 171
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=92.67 E-value=1 Score=32.34 Aligned_cols=54 Identities=15% Similarity=0.212 Sum_probs=28.5
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 047934 217 GFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLE 271 (344)
Q Consensus 217 ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~ 271 (344)
.|...+++++|.++++.+....-. +...|...-.+|.+.|++++|.+.|+...+
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 445555555555555555554211 344445555555555555555555555554
No 172
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=92.41 E-value=5.3 Score=41.69 Aligned_cols=90 Identities=11% Similarity=0.013 Sum_probs=60.1
Q ss_pred hcccccCCCCCCCCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 047934 142 RQEQKPNRNEPISEPPQEADEIFKKMKETGLIP--NAVAMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFC 219 (344)
Q Consensus 142 ~~y~~~~~~~~~sg~~~~A~~lf~~M~~~gi~p--~~~tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~ 219 (344)
.+|++ .+...|++..|+.++....+..-.. -|-+-+..-..+..++.|..+|..... ..|+..+|.--+..--
T Consensus 588 lM~ak---e~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~--~sgTeRv~mKs~~~er 662 (913)
T KOG0495|consen 588 LMYAK---EKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARS--ISGTERVWMKSANLER 662 (913)
T ss_pred HHHHH---HHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhc--cCCcchhhHHHhHHHH
Confidence 45555 4455688888888888877754221 133556666677788888888876654 4566677766666666
Q ss_pred HcCCHHHHHHHHHHHHH
Q 047934 220 KAQKFDDAKRIFRKMQS 236 (344)
Q Consensus 220 k~g~~e~A~~vf~~M~~ 236 (344)
..+..++|.+++++..+
T Consensus 663 ~ld~~eeA~rllEe~lk 679 (913)
T KOG0495|consen 663 YLDNVEEALRLLEEALK 679 (913)
T ss_pred HhhhHHHHHHHHHHHHH
Confidence 66777888877766544
No 173
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=92.27 E-value=0.47 Score=34.78 Aligned_cols=62 Identities=26% Similarity=0.387 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCC-CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 047934 209 VIYTAVVDGFCKAQKFDDAKRIFRKMQSN----GIA-PN-AFSYNLLIQGLYKCNKLEEAVEYCIEML 270 (344)
Q Consensus 209 ~tyn~LI~ay~k~g~~e~A~~vf~~M~~~----gi~-pd-~~tyn~LI~ay~k~g~~~~A~~lf~~M~ 270 (344)
.+|+.+-..|...|++++|+..|++..+. |-. ++ ..++..|-.+|...|+.++|++.+++-.
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45677777777778888877777776532 211 22 4567777778888888888888877654
No 174
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=92.16 E-value=0.94 Score=43.48 Aligned_cols=113 Identities=13% Similarity=0.117 Sum_probs=81.8
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 047934 154 SEPPQEADEIFKKMKETGLIPNAVAMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRIFRK 233 (344)
Q Consensus 154 sg~~~~A~~lf~~M~~~gi~p~~~tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~ 233 (344)
.|+...|.++-.+..-.+-. =|-..|.+|+..++|++-.++... +-.+.-|--++.+|.+.|...+|..+...
T Consensus 190 ~~~~k~A~kl~k~Fkv~dkr-fw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~eA~~yI~k 262 (319)
T PF04840_consen 190 MGQEKQAEKLKKEFKVPDKR-FWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKKEASKYIPK 262 (319)
T ss_pred CCCHHHHHHHHHHcCCcHHH-HHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHHHHHHHHHh
Confidence 56677887777665322211 155889999999999987775432 12458899999999999999999998877
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 047934 234 MQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLC 289 (344)
Q Consensus 234 M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~ 289 (344)
+ ++.--+..|.++|++.+|.+.-.+.+ |.....-+...|.
T Consensus 263 ~----------~~~~rv~~y~~~~~~~~A~~~A~~~k------d~~~L~~i~~~~~ 302 (319)
T PF04840_consen 263 I----------PDEERVEMYLKCGDYKEAAQEAFKEK------DIDLLKQILKRCP 302 (319)
T ss_pred C----------ChHHHHHHHHHCCCHHHHHHHHHHcC------CHHHHHHHHHHCC
Confidence 2 44778999999999999987655443 4455555554443
No 175
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=92.12 E-value=4.1 Score=40.72 Aligned_cols=143 Identities=17% Similarity=0.187 Sum_probs=105.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHH
Q 047934 176 AVAMLDGLCKDGLIQEAMKLFGLMREKG-TIPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSY-NLLIQGL 253 (344)
Q Consensus 176 ~~tli~~~~k~g~~~~A~~lf~~M~~~g-~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~ty-n~LI~ay 253 (344)
|...|+...+..-++.|..+|-...+.| +.+++.+++++|..++. |+..-|..+|+.=... -||...| +-.+.-+
T Consensus 400 ~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~--f~d~~~y~~kyl~fL 476 (660)
T COG5107 400 FCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK--FPDSTLYKEKYLLFL 476 (660)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh--CCCchHHHHHHHHHH
Confidence 4567888888889999999999999999 78999999999998764 6677888888753332 2455544 4567777
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCcccHHHHHHHHhccC
Q 047934 254 YKCNKLEEAVEYCIEMLEAGHSPN--VTTFVGLVDGLCRERGVEKAQSVIATLKEKGFLVNDKAVREFLDKKA 324 (344)
Q Consensus 254 ~k~g~~~~A~~lf~~M~~~gv~pd--~~ty~~lL~a~~~~G~~e~a~~l~~~M~~~Gi~p~~~~~~~Ll~~ya 324 (344)
..-++-..|..+|+.-... ++-+ ...|..+|+.=...|++..+..+=+.|... .|-..+...+...|+
T Consensus 477 i~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~evF~Sry~ 546 (660)
T COG5107 477 IRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEVFTSRYA 546 (660)
T ss_pred HHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHHHHHHHh
Confidence 8889999999999954432 1112 567899999989999998887777776653 334444444454444
No 176
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=92.11 E-value=1 Score=32.04 Aligned_cols=64 Identities=20% Similarity=0.203 Sum_probs=43.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHH
Q 047934 207 EVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCN-KLEEAVEYCIEMLE 271 (344)
Q Consensus 207 d~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g-~~~~A~~lf~~M~~ 271 (344)
+..+|..+=..+...|++++|+..|.+..+.. .-+...|..+-.+|.+.| ++++|++.|++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 34566666677777777888888777776652 124556777777777777 67777777776544
No 177
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=91.61 E-value=7.2 Score=42.55 Aligned_cols=124 Identities=15% Similarity=0.139 Sum_probs=70.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHcCCHHHHHH------------------HHHHHHHCC
Q 047934 178 AMLDGLCKDGLIQEAMKLFGLMREKG-TIPEVVIYTAVVDGFCKAQKFDDAKR------------------IFRKMQSNG 238 (344)
Q Consensus 178 tli~~~~k~g~~~~A~~lf~~M~~~g-~~pd~~tyn~LI~ay~k~g~~e~A~~------------------vf~~M~~~g 238 (344)
.|+..|...+++++|.++.+.-.+.. -.+....|..+ .|...+..+++.. +...|...+
T Consensus 36 ~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~--l~~q~~~~~~~~lv~~l~~~~~~~~~~~ve~~~~~i~~~~ 113 (906)
T PRK14720 36 DLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGI--LSLSRRPLNDSNLLNLIDSFSQNLKWAIVEHICDKILLYG 113 (906)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHH--HHHhhcchhhhhhhhhhhhcccccchhHHHHHHHHHHhhh
Confidence 47777777777777777776443321 11222222222 2333333333333 333332211
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 047934 239 IAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRERGVEKAQSVIATLKEK 307 (344)
Q Consensus 239 i~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~~e~a~~l~~~M~~~ 307 (344)
-+...+-.|-.+|-+.|+.++|..+++++.+.. .-|....+-+-..|+.. ++++|.++.......
T Consensus 114 --~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~ 178 (906)
T PRK14720 114 --ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR 178 (906)
T ss_pred --hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH
Confidence 122345566667777788888888888877765 33566667777777777 777777777766544
No 178
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=91.51 E-value=4.9 Score=37.42 Aligned_cols=88 Identities=13% Similarity=-0.054 Sum_probs=49.0
Q ss_pred HcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHcCCHH
Q 047934 185 KDGLIQEAMKLFGLMREKGTIP--EVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNG--IAPNAFSYNLLIQGLYKCNKLE 260 (344)
Q Consensus 185 k~g~~~~A~~lf~~M~~~g~~p--d~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~g--i~pd~~tyn~LI~ay~k~g~~~ 260 (344)
+.|++++|...|+.+.+..-.. ....+--+-..|...|++++|...|+.+...- -......+--+...|.+.|+.+
T Consensus 155 ~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~ 234 (263)
T PRK10803 155 DKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTA 234 (263)
T ss_pred hcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHH
Confidence 3466677777776666542110 01344455566667777777777777776531 1111223333444555677777
Q ss_pred HHHHHHHHHHHc
Q 047934 261 EAVEYCIEMLEA 272 (344)
Q Consensus 261 ~A~~lf~~M~~~ 272 (344)
+|.++|++..+.
T Consensus 235 ~A~~~~~~vi~~ 246 (263)
T PRK10803 235 KAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHHHHH
Confidence 777777766654
No 179
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.49 E-value=12 Score=34.82 Aligned_cols=150 Identities=14% Similarity=0.081 Sum_probs=105.4
Q ss_pred CCCHHHHHHHHHHHHHC---C-CCCC-HH---HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHHcCCH
Q 047934 154 SEPPQEADEIFKKMKET---G-LIPN-AV---AMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDG-FCKAQKF 224 (344)
Q Consensus 154 sg~~~~A~~lf~~M~~~---g-i~p~-~~---tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~a-y~k~g~~ 224 (344)
..+.++.++++.+|... | ..++ |. -++-+..-.|+.+.|..+++.+.+.= |...=.-.|=.+ +-..|.+
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhch
Confidence 34688999999988753 3 4444 32 25666677889999999999987762 332211111111 2356789
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 047934 225 DDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRERGVEKAQSVIATL 304 (344)
Q Consensus 225 e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~~e~a~~l~~~M 304 (344)
++|.++++.+.+.. +-|.++|--=|...-..|.--+|++-+.+..+. +.-|...|.-+-..|...|++++|.--+++|
T Consensus 103 ~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 KEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 99999999998875 446666664444444566666777777766654 4569999999999999999999999999888
Q ss_pred HHC
Q 047934 305 KEK 307 (344)
Q Consensus 305 ~~~ 307 (344)
.-.
T Consensus 181 ll~ 183 (289)
T KOG3060|consen 181 LLI 183 (289)
T ss_pred HHc
Confidence 754
No 180
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=91.44 E-value=4.6 Score=41.42 Aligned_cols=121 Identities=12% Similarity=0.015 Sum_probs=81.7
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHcC--------CHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHc
Q 047934 155 EPPQEADEIFKKMKETGLIPNAV----AMLDGLCKDG--------LIQEAMKLFGLMREK-GTIPEVVIYTAVVDGFCKA 221 (344)
Q Consensus 155 g~~~~A~~lf~~M~~~gi~p~~~----tli~~~~k~g--------~~~~A~~lf~~M~~~-g~~pd~~tyn~LI~ay~k~ 221 (344)
+..+.|..+|++..+.+ |+.. .+..+|.... .+..+.+........ ....+..+|.++--.+...
T Consensus 356 ~~~~~A~~lle~Ai~ld--P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~ 433 (517)
T PRK10153 356 KSLNKASDLLEEILKSE--PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVK 433 (517)
T ss_pred HHHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhc
Confidence 35778888998887653 4432 2222222211 123333333332222 2334567888876667778
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 047934 222 QKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTF 281 (344)
Q Consensus 222 g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty 281 (344)
|++++|...|++..+.. |+...|..+-..|...|+.++|.+.+++-... .|...||
T Consensus 434 g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L--~P~~pt~ 489 (517)
T PRK10153 434 GKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL--RPGENTL 489 (517)
T ss_pred CCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCchH
Confidence 99999999999998874 68899999999999999999999999887654 4554454
No 181
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=90.57 E-value=1.3 Score=44.36 Aligned_cols=128 Identities=15% Similarity=0.101 Sum_probs=61.5
Q ss_pred CCCHHHHHHHHH-HHHHCCCCCCH-HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 047934 154 SEPPQEADEIFK-KMKETGLIPNA-VAMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRIF 231 (344)
Q Consensus 154 sg~~~~A~~lf~-~M~~~gi~p~~-~tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf 231 (344)
.++++++.++.. .-.-..+.++. ..++.-+-+.|..+.|+++-.+-.. -.+...++|+++.|.++-
T Consensus 274 ~~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~~------------rFeLAl~lg~L~~A~~~a 341 (443)
T PF04053_consen 274 RGDFEEVLRMIAASNLLPNIPKDQGQSIARFLEKKGYPELALQFVTDPDH------------RFELALQLGNLDIALEIA 341 (443)
T ss_dssp TT-HHH-----HHHHTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS-HHH------------HHHHHHHCT-HHHHHHHC
T ss_pred cCChhhhhhhhhhhhhcccCChhHHHHHHHHHHHCCCHHHHHhhcCChHH------------HhHHHHhcCCHHHHHHHH
Confidence 456666555543 11111122222 3577777788888888877654321 233445566666665554
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 047934 232 RKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRERGVEKAQSVIATLKEKG 308 (344)
Q Consensus 232 ~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~~e~a~~l~~~M~~~G 308 (344)
++.. +...|..|-+...+.|+++.|.+.|.+..+ |..|+--|.-.|+.+...++.+.....|
T Consensus 342 ~~~~------~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 342 KELD------DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp CCCS------THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred HhcC------cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 3322 555666666666666666666666655432 2334444444555555555554444443
No 182
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=90.43 E-value=1.5 Score=31.46 Aligned_cols=56 Identities=20% Similarity=0.096 Sum_probs=47.2
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 047934 251 QGLYKCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRERGVEKAQSVIATLKEK 307 (344)
Q Consensus 251 ~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~~e~a~~l~~~M~~~ 307 (344)
..|.+.+++++|.++++.+.... +-+...+...-..+...|++++|.+.++...+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 56889999999999999999873 225666677778888999999999999998865
No 183
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=90.28 E-value=5.5 Score=42.72 Aligned_cols=119 Identities=18% Similarity=0.179 Sum_probs=92.0
Q ss_pred HHHcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 047934 183 LCKDGLIQEAMKLFGLMREK-GTIPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEE 261 (344)
Q Consensus 183 ~~k~g~~~~A~~lf~~M~~~-g~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~ 261 (344)
....+.+..|++....+.++ +-.+-..++-+|+. .+.|+.++|..+++.....+.. |..|..++-.+|-..++.++
T Consensus 19 ~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl--~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSL--FRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHH--HHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhH
Confidence 34567888999988876654 33333344444433 4889999999999998877666 99999999999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 047934 262 AVEYCIEMLEAGHSPNVTTFVGLVDGLCRERGVEKAQSVIATLKE 306 (344)
Q Consensus 262 A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~~e~a~~l~~~M~~ 306 (344)
|..+++..... -|+......+..+|++.+.+.+-.++--+|-+
T Consensus 96 ~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK 138 (932)
T KOG2053|consen 96 AVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYK 138 (932)
T ss_pred HHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999987654 67888888999999999988776555555444
No 184
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=90.07 E-value=3.9 Score=38.49 Aligned_cols=78 Identities=9% Similarity=0.072 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----cCCCCCHHHHHH
Q 047934 209 VIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLE-----AGHSPNVTTFVG 283 (344)
Q Consensus 209 ~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~-----~gv~pd~~ty~~ 283 (344)
.++..++..+..+|+.+.+...++++.... .-|...|..||.+|.+.|+...|+..|+.+.. .|+.|-..+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 456777888888888888888888887653 33677888888888888888888888887765 477777777665
Q ss_pred HHHH
Q 047934 284 LVDG 287 (344)
Q Consensus 284 lL~a 287 (344)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 5555
No 185
>PRK04841 transcriptional regulator MalT; Provisional
Probab=90.03 E-value=21 Score=38.77 Aligned_cols=154 Identities=12% Similarity=0.014 Sum_probs=98.8
Q ss_pred CCCCHHHHHHHHHHHHHC--CC----CCCHH-----HHHHHHHHcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHH
Q 047934 153 ISEPPQEADEIFKKMKET--GL----IPNAV-----AMLDGLCKDGLIQEAMKLFGLMREKGTIPE----VVIYTAVVDG 217 (344)
Q Consensus 153 ~sg~~~~A~~lf~~M~~~--gi----~p~~~-----tli~~~~k~g~~~~A~~lf~~M~~~g~~pd----~~tyn~LI~a 217 (344)
..|++++|..+.....+. .. .+... .+-..+...|++++|..+++...+.--..+ ..+.+.+-..
T Consensus 421 ~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~ 500 (903)
T PRK04841 421 SQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEV 500 (903)
T ss_pred HCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHH
Confidence 367889999888876542 11 11111 122344578999999999988765311112 1344566667
Q ss_pred HHHcCCHHHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCC--C-CHHHHHHHH
Q 047934 218 FCKAQKFDDAKRIFRKMQSN----GI-APNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEA----GHS--P-NVTTFVGLV 285 (344)
Q Consensus 218 y~k~g~~e~A~~vf~~M~~~----gi-~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~----gv~--p-d~~ty~~lL 285 (344)
+...|++++|...+.+.... |- ..-..++..+-..+...|++++|...+++.... +.. + ....+..+-
T Consensus 501 ~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 580 (903)
T PRK04841 501 HHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRA 580 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHH
Confidence 78899999999999887642 11 111234556666788899999999998886542 221 1 122333444
Q ss_pred HHHHHcCCHHHHHHHHHHHHH
Q 047934 286 DGLCRERGVEKAQSVIATLKE 306 (344)
Q Consensus 286 ~a~~~~G~~e~a~~l~~~M~~ 306 (344)
..+...|++++|...+.+...
T Consensus 581 ~~~~~~G~~~~A~~~~~~al~ 601 (903)
T PRK04841 581 QLLWEWARLDEAEQCARKGLE 601 (903)
T ss_pred HHHHHhcCHHHHHHHHHHhHH
Confidence 556667999999999887654
No 186
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.92 E-value=17 Score=34.08 Aligned_cols=127 Identities=10% Similarity=0.048 Sum_probs=89.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-----HH
Q 047934 178 AMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLI-----QG 252 (344)
Q Consensus 178 tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI-----~a 252 (344)
+++..+.-.+.+.-.+.++++.++..-+-+......|.++-...|+.+.|...|++..+..-+.|..+.+.++ ..
T Consensus 182 ~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i 261 (366)
T KOG2796|consen 182 SMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFL 261 (366)
T ss_pred HHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhh
Confidence 4566666667788888888888887767788899999999999999999999999887654344444444433 34
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHHcCCHHHHHHHHHHHHHC
Q 047934 253 LYKCNKLEEAVEYCIEMLEAGHSPNVTTFV--GLVDGLCRERGVEKAQSVIATLKEK 307 (344)
Q Consensus 253 y~k~g~~~~A~~lf~~M~~~gv~pd~~ty~--~lL~a~~~~G~~e~a~~l~~~M~~~ 307 (344)
|.-.+++..|...|.+.....- -|....| +|+..| .|+..+|.+.++.|...
T Consensus 262 ~lg~nn~a~a~r~~~~i~~~D~-~~~~a~NnKALcllY--lg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 262 HLGQNNFAEAHRFFTEILRMDP-RNAVANNNKALCLLY--LGKLKDALKQLEAMVQQ 315 (366)
T ss_pred eecccchHHHHHHHhhccccCC-CchhhhchHHHHHHH--HHHHHHHHHHHHHHhcc
Confidence 4456778888888877765421 1233333 343333 58889999999998875
No 187
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=89.69 E-value=29 Score=36.54 Aligned_cols=128 Identities=14% Similarity=0.123 Sum_probs=92.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH----HHHCCCCCCHHHHHHHHHHH
Q 047934 178 AMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRIFRK----MQSNGIAPNAFSYNLLIQGL 253 (344)
Q Consensus 178 tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~----M~~~gi~pd~~tyn~LI~ay 253 (344)
-|..+|++..-++.|..+++..++. ++-+..+|-+--..=-..|..+.+.++.++ +...|++.+..-|-.=-.+|
T Consensus 411 dLwlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~ 489 (913)
T KOG0495|consen 411 DLWLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEAC 489 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHH
Confidence 3677777777888888888777654 666777776555555677777777777654 45678888888887777777
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 047934 254 YKCNKLEEAVEYCIEMLEAGHSP--NVTTFVGLVDGLCRERGVEKAQSVIATLKE 306 (344)
Q Consensus 254 ~k~g~~~~A~~lf~~M~~~gv~p--d~~ty~~lL~a~~~~G~~e~a~~l~~~M~~ 306 (344)
-+.|..-.+..+.......|++- -..||...-..|.+.+.++-|+.++....+
T Consensus 490 e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alq 544 (913)
T KOG0495|consen 490 EDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQ 544 (913)
T ss_pred hhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHh
Confidence 77788777777777777766642 346777777778888877777777776554
No 188
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=89.57 E-value=17 Score=33.61 Aligned_cols=155 Identities=14% Similarity=0.094 Sum_probs=102.9
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCHH-----HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc------
Q 047934 153 ISEPPQEADEIFKKMKETGLIPNAV-----AMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKA------ 221 (344)
Q Consensus 153 ~sg~~~~A~~lf~~M~~~gi~p~~~-----tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~------ 221 (344)
..|++++|.+.|+.+..+..--.|. .++-++-+.++.++|+..++++.+.--...-.-|-.-|.+.+.-
T Consensus 46 ~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~~ 125 (254)
T COG4105 46 QKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDDV 125 (254)
T ss_pred hcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCcc
Confidence 3789999999999999765332232 36777789999999999999988764333334555555555533
Q ss_pred -CCHHHHHHHHHHH---HH----CCCCCCHHHH------------HHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCCHH
Q 047934 222 -QKFDDAKRIFRKM---QS----NGIAPNAFSY------------NLLIQGLYKCNKLEEAVEYCIEMLEA--GHSPNVT 279 (344)
Q Consensus 222 -g~~e~A~~vf~~M---~~----~gi~pd~~ty------------n~LI~ay~k~g~~~~A~~lf~~M~~~--gv~pd~~ 279 (344)
.+...+..-|..| .. ....+|+..- ..+-.-|.+.|.+-.|..-+++|.+. .-.-...
T Consensus 126 ~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~e 205 (254)
T COG4105 126 TRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVRE 205 (254)
T ss_pred ccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHH
Confidence 2333344444444 32 2344444321 23455677889999999999999986 2223345
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 047934 280 TFVGLVDGLCRERGVEKAQSVIATLKEK 307 (344)
Q Consensus 280 ty~~lL~a~~~~G~~e~a~~l~~~M~~~ 307 (344)
.+-.+..+|-..|..++|...-.-+...
T Consensus 206 aL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 206 ALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 5667888899999988888776666544
No 189
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=89.40 E-value=30 Score=36.15 Aligned_cols=151 Identities=13% Similarity=0.153 Sum_probs=99.2
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHcCCHHH----HHHHHHHHHHcCC----------CCCHHHH--HHHHHHHH
Q 047934 156 PPQEADEIFKKMKETGLIPNAVAMLDGLCKDGLIQE----AMKLFGLMREKGT----------IPEVVIY--TAVVDGFC 219 (344)
Q Consensus 156 ~~~~A~~lf~~M~~~gi~p~~~tli~~~~k~g~~~~----A~~lf~~M~~~g~----------~pd~~ty--n~LI~ay~ 219 (344)
-.+...+++..+.++|+++-...+..-|-.....+- |.++...+...|. +|++..| --++..|-
T Consensus 303 l~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D 382 (700)
T KOG1156|consen 303 LKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYD 382 (700)
T ss_pred hHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHH
Confidence 466777788888899988755566655554333332 2222222222221 4555544 45778888
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 047934 220 KAQKFDDAKRIFRKMQSNGIAPNAF-SYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRERGVEKAQ 298 (344)
Q Consensus 220 k~g~~e~A~~vf~~M~~~gi~pd~~-tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~~e~a~ 298 (344)
+.|+++.|+...+....+ .|+.+ -|.+=-..+..+|.+++|..++++..+... +|...=.--.....++.+.++|.
T Consensus 383 ~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~-aDR~INsKcAKYmLrAn~i~eA~ 459 (700)
T KOG1156|consen 383 KLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT-ADRAINSKCAKYMLRANEIEEAE 459 (700)
T ss_pred HcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHccccHHHH
Confidence 999999999999988765 44433 344444777889999999999999877542 23322223333344678999999
Q ss_pred HHHHHHHHCCC
Q 047934 299 SVIATLKEKGF 309 (344)
Q Consensus 299 ~l~~~M~~~Gi 309 (344)
++....-+.|.
T Consensus 460 ~~~skFTr~~~ 470 (700)
T KOG1156|consen 460 EVLSKFTREGF 470 (700)
T ss_pred HHHHHhhhccc
Confidence 99999888876
No 190
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=89.25 E-value=4.6 Score=41.25 Aligned_cols=111 Identities=17% Similarity=0.102 Sum_probs=86.7
Q ss_pred HHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Q 047934 190 QEAMKLFGLMR-EKGTIPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAP-NAFSYNLLIQGLYKCNKLEEAVEYCI 267 (344)
Q Consensus 190 ~~A~~lf~~M~-~~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~p-d~~tyn~LI~ay~k~g~~~~A~~lf~ 267 (344)
.+..++|-++. ..+.+.|..+++.|=-.|--.|+++.|.+.|+..... +| |..+||-|=..++...+..+|+..+.
T Consensus 411 ~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v--~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~ 488 (579)
T KOG1125|consen 411 AHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQV--KPNDYLLWNRLGATLANGNRSEEAISAYN 488 (579)
T ss_pred HHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhc--CCchHHHHHHhhHHhcCCcccHHHHHHHH
Confidence 34556666654 3455678888888888888899999999999998775 44 57789999999999999999999999
Q ss_pred HHHHcCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 047934 268 EMLEAGHSPN--VTTFVGLVDGLCRERGVEKAQSVIATLK 305 (344)
Q Consensus 268 ~M~~~gv~pd--~~ty~~lL~a~~~~G~~e~a~~l~~~M~ 305 (344)
+.++. +|. .+=|| |--+|...|.+++|.+.|-+..
T Consensus 489 rALqL--qP~yVR~RyN-lgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 489 RALQL--QPGYVRVRYN-LGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHhc--CCCeeeeehh-hhhhhhhhhhHHHHHHHHHHHH
Confidence 98875 454 33355 4556889999999988877644
No 191
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=89.24 E-value=17 Score=33.22 Aligned_cols=157 Identities=8% Similarity=0.085 Sum_probs=98.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH---HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 047934 179 MLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIY---TAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYK 255 (344)
Q Consensus 179 li~~~~k~g~~~~A~~lf~~M~~~g~~pd~~ty---n~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k 255 (344)
.-..+.+.|++++|.+.|+.+...--.. ..+- =.+..+|.+.+++++|...|++..+.--.-...-|...+.+.+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~ 116 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTN 116 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhh
Confidence 3455667899999999999998763322 2333 23557778999999999999999876322223344444444431
Q ss_pred --c---------------CC---HHHHHHHHHHHHHc----CCCCCHHHH------------HHHHHHHHHcCCHHHHHH
Q 047934 256 --C---------------NK---LEEAVEYCIEMLEA----GHSPNVTTF------------VGLVDGLCRERGVEKAQS 299 (344)
Q Consensus 256 --~---------------g~---~~~A~~lf~~M~~~----gv~pd~~ty------------~~lL~a~~~~G~~e~a~~ 299 (344)
. .+ ..+|++.|+++.+. ...++.... -.+..-|.+.|.+.-|..
T Consensus 117 ~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~ 196 (243)
T PRK10866 117 MALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVN 196 (243)
T ss_pred hhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHH
Confidence 1 11 23566666666553 111122111 123444777888888888
Q ss_pred HHHHHHHC--CCcccHHHHHHHHhccCCCChHH----HHHHhc
Q 047934 300 VIATLKEK--GFLVNDKAVREFLDKKAPFSSSV----WEAIFG 336 (344)
Q Consensus 300 l~~~M~~~--Gi~p~~~~~~~Ll~~yak~g~~~----W~all~ 336 (344)
-++.+.+. +-.........+++.|.+.|... |...|+
T Consensus 197 r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 197 RVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 88888876 55666777788888888777643 444444
No 192
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=89.10 E-value=6.3 Score=33.36 Aligned_cols=95 Identities=9% Similarity=0.111 Sum_probs=63.5
Q ss_pred HHHcCCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHH
Q 047934 199 MREKGTIPEVV--IYTAVVDGFCKAQKFDDAKRIFRKMQSNG-----IAPNAFSYNLLIQGLYKCNK-LEEAVEYCIEML 270 (344)
Q Consensus 199 M~~~g~~pd~~--tyn~LI~ay~k~g~~e~A~~vf~~M~~~g-----i~pd~~tyn~LI~ay~k~g~-~~~A~~lf~~M~ 270 (344)
|++.+..+++. ..|.++.-.+.-+.+.....+++.+..-. -..|-.+|.+++.+.++... --.+..+|.-|+
T Consensus 28 ~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk 107 (145)
T PF13762_consen 28 MQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLK 107 (145)
T ss_pred hhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHH
Confidence 34445555543 34777777777777777777777663320 02355678888888876666 345677888888
Q ss_pred HcCCCCCHHHHHHHHHHHHHcCC
Q 047934 271 EAGHSPNVTTFVGLVDGLCRERG 293 (344)
Q Consensus 271 ~~gv~pd~~ty~~lL~a~~~~G~ 293 (344)
+.+.+++..-|..+|.+|.+.-.
T Consensus 108 ~~~~~~t~~dy~~li~~~l~g~~ 130 (145)
T PF13762_consen 108 KNDIEFTPSDYSCLIKAALRGYF 130 (145)
T ss_pred HcCCCCCHHHHHHHHHHHHcCCC
Confidence 87788888888888888876533
No 193
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=89.05 E-value=5.7 Score=37.51 Aligned_cols=96 Identities=24% Similarity=0.273 Sum_probs=54.2
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHH
Q 047934 183 LCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPN-AFSYNLLIQGLYKCNKLEE 261 (344)
Q Consensus 183 ~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd-~~tyn~LI~ay~k~g~~~~ 261 (344)
..+.+++++|+..|.+.++. .+-|.+-|..--.+|++.|.++.|.+=.+.-..- .|. ..+|..|=.+|...|++++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l-~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--Dp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIEL-DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI--DPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhc-CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHccCcHHH
Confidence 44556666666666666554 2235566666666666666666666555444332 221 3356666666666666666
Q ss_pred HHHHHHHHHHcCCCCCHHHHHH
Q 047934 262 AVEYCIEMLEAGHSPNVTTFVG 283 (344)
Q Consensus 262 A~~lf~~M~~~gv~pd~~ty~~ 283 (344)
|.+.|.+-++ +.|+-.+|-.
T Consensus 168 A~~aykKaLe--ldP~Ne~~K~ 187 (304)
T KOG0553|consen 168 AIEAYKKALE--LDPDNESYKS 187 (304)
T ss_pred HHHHHHhhhc--cCCCcHHHHH
Confidence 6666554433 4555555543
No 194
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=88.88 E-value=5.6 Score=32.63 Aligned_cols=120 Identities=11% Similarity=0.025 Sum_probs=73.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 047934 211 YTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCR 290 (344)
Q Consensus 211 yn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~ 290 (344)
...+|..+.+.+....+..+++.+...+. .+...++.+|..|++.. ..+.++.+.. . .+......+++.|.+
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~---~---~~~yd~~~~~~~c~~ 81 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN---K---SNHYDIEKVGKLCEK 81 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh---c---cccCCHHHHHHHHHH
Confidence 45688888888999999999999988874 68889999999999864 3444455542 1 233334446666666
Q ss_pred cCCHHHHHHHHHHHHHCCCcccH-----HHHHHHHhccCCC-ChHHHHHHhcCc
Q 047934 291 ERGVEKAQSVIATLKEKGFLVND-----KAVREFLDKKAPF-SSSVWEAIFGKK 338 (344)
Q Consensus 291 ~G~~e~a~~l~~~M~~~Gi~p~~-----~~~~~Ll~~yak~-g~~~W~all~~~ 338 (344)
.+.++++..++..+....-..+. ..+...++.+.+. ....|..++..+
T Consensus 82 ~~l~~~~~~l~~k~~~~~~Al~~~l~~~~d~~~a~~~~~~~~~~~lw~~~~~~~ 135 (140)
T smart00299 82 AKLYEEAVELYKKDGNFKDAIVTLIEHLGNYEKAIEYFVKQNNPELWAEVLKAL 135 (140)
T ss_pred cCcHHHHHHHHHhhcCHHHHHHHHHHcccCHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 66666666666554321100000 1123334444443 346788887654
No 195
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=88.83 E-value=7.9 Score=36.44 Aligned_cols=77 Identities=13% Similarity=0.189 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCcccHHHHHHH
Q 047934 245 SYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRERGVEKAQSVIATLKE-----KGFLVNDKAVREF 319 (344)
Q Consensus 245 tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~~e~a~~l~~~M~~-----~Gi~p~~~~~~~L 319 (344)
++..++..+..+|+.+.+.+.++++.... .-|...|..++.+|.+.|+...|...++.+.+ .|+.|...+...+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 77889999999999999999999998763 45899999999999999999999999998766 4999998887777
Q ss_pred Hhc
Q 047934 320 LDK 322 (344)
Q Consensus 320 l~~ 322 (344)
.+.
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 665
No 196
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=88.83 E-value=4.7 Score=43.14 Aligned_cols=133 Identities=18% Similarity=0.108 Sum_probs=85.8
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHcCCHHHHHHHHHHHHHc-CC--------CC-CHHHHHHHHHHHHHcCC
Q 047934 154 SEPPQEADEIFKKMKETGLIPNAVAMLDGLCKDGLIQEAMKLFGLMREK-GT--------IP-EVVIYTAVVDGFCKAQK 223 (344)
Q Consensus 154 sg~~~~A~~lf~~M~~~gi~p~~~tli~~~~k~g~~~~A~~lf~~M~~~-g~--------~p-d~~tyn~LI~ay~k~g~ 223 (344)
-|++|.|.+-..-++..- -|.-|...|.+..+.+-|.-.+..|... |. .+ +...-.+++ ....|.
T Consensus 741 iG~MD~AfksI~~IkS~~---vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvL--AieLgM 815 (1416)
T KOG3617|consen 741 IGSMDAAFKSIQFIKSDS---VWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVL--AIELGM 815 (1416)
T ss_pred eccHHHHHHHHHHHhhhH---HHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHH--HHHHhh
Confidence 688999988777666532 3888999999999998888888877532 21 12 222222333 357789
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 047934 224 FDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRERGVEKAQSVIAT 303 (344)
Q Consensus 224 ~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~~e~a~~l~~~ 303 (344)
+++|+.+|++.++ |..|=.-|-..|.|++|+++-+.--.-.+. .||---...+...++.+.|.+.|+.
T Consensus 816 lEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr---~Tyy~yA~~Lear~Di~~AleyyEK 883 (1416)
T KOG3617|consen 816 LEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRIHLR---NTYYNYAKYLEARRDIEAALEYYEK 883 (1416)
T ss_pred HHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhccceehh---hhHHHHHHHHHhhccHHHHHHHHHh
Confidence 9999999998875 556666777799999999876543222222 2333223333334556666665553
No 197
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=88.61 E-value=11 Score=39.45 Aligned_cols=130 Identities=13% Similarity=0.193 Sum_probs=88.5
Q ss_pred CHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCCCHHHHHHHHHHHHHcCCHHH--
Q 047934 156 PPQEADEIFKKMKETGLIPN-AVAMLDGLCKDGLIQEAMKLFGLMREK------GTIPEVVIYTAVVDGFCKAQKFDD-- 226 (344)
Q Consensus 156 ~~~~A~~lf~~M~~~gi~p~-~~tli~~~~k~g~~~~A~~lf~~M~~~------g~~pd~~tyn~LI~ay~k~g~~e~-- 226 (344)
-++-+.+++++-.. +.|. ..-.|.-+++.+++++|-+.+...... ..+.+...|.-+-+..+++.+.-.
T Consensus 153 lPets~rvyrRYLk--~~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~sl 230 (835)
T KOG2047|consen 153 LPETSIRVYRRYLK--VAPEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSL 230 (835)
T ss_pred ChHHHHHHHHHHHh--cCHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhccc
Confidence 34555555555443 2222 224788899999999999988876533 345677788888887777765443
Q ss_pred -HHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 047934 227 -AKRIFRKMQSNGIAPN--AFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRE 291 (344)
Q Consensus 227 -A~~vf~~M~~~gi~pd--~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~ 291 (344)
...+++.+... =+| -..|++|.+-|++.|.++.|.+++++-...- .++.-|+-+.++|+.-
T Consensus 231 nvdaiiR~gi~r--ftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~F 294 (835)
T KOG2047|consen 231 NVDAIIRGGIRR--FTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQF 294 (835)
T ss_pred CHHHHHHhhccc--CcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHH
Confidence 44455555433 233 4679999999999999999999999876642 2455577777777653
No 198
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=88.22 E-value=7.8 Score=39.66 Aligned_cols=160 Identities=15% Similarity=0.109 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCCHHHH----------HHHHHH-------
Q 047934 157 PQEADEIFKKMKETGLIPNAVAMLDGLCKDGLIQEAMKLFGLMRE--KGTIPEVVIY----------TAVVDG------- 217 (344)
Q Consensus 157 ~~~A~~lf~~M~~~gi~p~~~tli~~~~k~g~~~~A~~lf~~M~~--~g~~pd~~ty----------n~LI~a------- 217 (344)
+.-+.++.+.-++.-+ +|.++---|...|+..+|.++|..-.. ..+.|--..| ..-|.+
T Consensus 298 f~lsh~LV~~yP~~a~--sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl 375 (611)
T KOG1173|consen 298 FLLSHKLVDLYPSKAL--SWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL 375 (611)
T ss_pred HHHHHHHHHhCCCCCc--chhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh
Confidence 4556666666555433 588877777777999999999976432 2222211111 111111
Q ss_pred --------------HHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CC----CC
Q 047934 218 --------------FCKAQKFDDAKRIFRKMQSNGIAP-NAFSYNLLIQGLYKCNKLEEAVEYCIEMLEA--GH----SP 276 (344)
Q Consensus 218 --------------y~k~g~~e~A~~vf~~M~~~gi~p-d~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~--gv----~p 276 (344)
|...+..+.|.+.|.+.. ++.| |....+-+=-.....+.+.+|...|+.-+.. .+ .-
T Consensus 376 ~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~--ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~ 453 (611)
T KOG1173|consen 376 MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQAL--AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIF 453 (611)
T ss_pred ccCCcchHHHHHHHHHHhccHHHHHHHHHHHH--hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccc
Confidence 344566777777776544 3444 4556666666666788999999999987632 11 12
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CcccHHHHHHHH
Q 047934 277 NVTTFVGLVDGLCRERGVEKAQSVIATLKEKG-FLVNDKAVREFL 320 (344)
Q Consensus 277 d~~ty~~lL~a~~~~G~~e~a~~l~~~M~~~G-i~p~~~~~~~Ll 320 (344)
-..+++.|-.+|.+.+..++|...++...... ..++..+-..++
T Consensus 454 w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~i 498 (611)
T KOG1173|consen 454 WEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYI 498 (611)
T ss_pred hhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHH
Confidence 45568888999999999999999999877653 333333333333
No 199
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.16 E-value=33 Score=35.51 Aligned_cols=150 Identities=12% Similarity=0.088 Sum_probs=95.5
Q ss_pred HHHHHHHHcC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH--------HHHHCCCCCCHHHHH
Q 047934 178 AMLDGLCKDG--LIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRIFR--------KMQSNGIAPNAFSYN 247 (344)
Q Consensus 178 tli~~~~k~g--~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf~--------~M~~~gi~pd~~tyn 247 (344)
+++..+.+.. ...+|.+++...-+..-.-..++-=+++......|+++.|.+++. .+.+.+..|-++ .
T Consensus 344 ~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V--~ 421 (652)
T KOG2376|consen 344 ILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTV--G 421 (652)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHH--H
Confidence 4554444332 355666666665544322234455566666778899999999998 555555555544 5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHH----HHcCCHHHHHHHHHHHHHCCCcccHHHHHHHHh
Q 047934 248 LLIQGLYKCNKLEEAVEYCIEMLEA--GHSPNVTTFVGLVDGL----CRERGVEKAQSVIATLKEKGFLVNDKAVREFLD 321 (344)
Q Consensus 248 ~LI~ay~k~g~~~~A~~lf~~M~~~--gv~pd~~ty~~lL~a~----~~~G~~e~a~~l~~~M~~~Gi~p~~~~~~~Ll~ 321 (344)
+++..|.+.++-+.|..++.+-..+ .-.+......+++.-. .+.|..++|..+++++.+.. .+|..+...++.
T Consensus 422 aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~ 500 (652)
T KOG2376|consen 422 AIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVT 500 (652)
T ss_pred HHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHH
Confidence 5677777877777777777765542 1122233333333333 35689999999999988743 457788888888
Q ss_pred ccCCCChHH
Q 047934 322 KKAPFSSSV 330 (344)
Q Consensus 322 ~yak~g~~~ 330 (344)
+|+......
T Consensus 501 a~~~~d~ek 509 (652)
T KOG2376|consen 501 AYARLDPEK 509 (652)
T ss_pred HHHhcCHHH
Confidence 888877654
No 200
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=88.02 E-value=5.8 Score=41.69 Aligned_cols=154 Identities=16% Similarity=0.097 Sum_probs=97.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHcCCHHHHHHHHHHH----------------------------H
Q 047934 150 NEPISEPPQEADEIFKKMKETGLIPNAV-AMLDGLCKDGLIQEAMKLFGLM----------------------------R 200 (344)
Q Consensus 150 ~~~~sg~~~~A~~lf~~M~~~gi~p~~~-tli~~~~k~g~~~~A~~lf~~M----------------------------~ 200 (344)
.|...|+..+|..+..+-.++.--|-+. .+-+.......+++|.++++.. .
T Consensus 433 CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl 512 (777)
T KOG1128|consen 433 CYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSL 512 (777)
T ss_pred HHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHh
Confidence 3344788888888888777743333222 2223322333344555554432 2
Q ss_pred HcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH
Q 047934 201 EKGTIPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPN-AFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVT 279 (344)
Q Consensus 201 ~~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd-~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ 279 (344)
+.. ..-..+|=.+=.+..+++++..|.+.|..... .+|| ...||.+-.+|.+.+.-.+|...+.+-.+.. .-+..
T Consensus 513 ~~n-plq~~~wf~~G~~ALqlek~q~av~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~ 588 (777)
T KOG1128|consen 513 EIN-PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQ 588 (777)
T ss_pred hcC-ccchhHHHhccHHHHHHhhhHHHHHHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCe
Confidence 111 01223333333444567788888888877654 3565 4589999999999999999999999987765 33444
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 047934 280 TFVGLVDGLCRERGVEKAQSVIATLKEK 307 (344)
Q Consensus 280 ty~~lL~a~~~~G~~e~a~~l~~~M~~~ 307 (344)
.|..-+....+.|.+++|.+.+..|.+.
T Consensus 589 iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 589 IWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred eeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 5555566667899999999999887653
No 201
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=87.73 E-value=16 Score=38.14 Aligned_cols=117 Identities=18% Similarity=0.210 Sum_probs=82.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCHHHHH----HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH
Q 047934 150 NEPISEPPQEADEIFKKMKETGLIPNAVAML----DGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFD 225 (344)
Q Consensus 150 ~~~~sg~~~~A~~lf~~M~~~gi~p~~~tli----~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e 225 (344)
.+...|+++.|..+.+..... .|+..-+. +.+..+|.+++|..++++..+... +|...-.--..-..++...+
T Consensus 380 h~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~-aDR~INsKcAKYmLrAn~i~ 456 (700)
T KOG1156|consen 380 HYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT-ADRAINSKCAKYMLRANEIE 456 (700)
T ss_pred HHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHccccH
Confidence 556688999999999987653 56555444 778899999999999998876643 45555445556667888999
Q ss_pred HHHHHHHHHHHCCCCCCHHH--------HHHH--HHHHHHcCCHHHHHHHHHHHHH
Q 047934 226 DAKRIFRKMQSNGIAPNAFS--------YNLL--IQGLYKCNKLEEAVEYCIEMLE 271 (344)
Q Consensus 226 ~A~~vf~~M~~~gi~pd~~t--------yn~L--I~ay~k~g~~~~A~~lf~~M~~ 271 (344)
+|.++.....+.|. ++.. |=.+ -.+|.+.|.+.+|++-|.....
T Consensus 457 eA~~~~skFTr~~~--~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k 510 (700)
T KOG1156|consen 457 EAEEVLSKFTREGF--GAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEK 510 (700)
T ss_pred HHHHHHHHhhhccc--chhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHH
Confidence 99999998888765 3322 2222 2356677778888777766543
No 202
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=87.66 E-value=13 Score=35.14 Aligned_cols=139 Identities=9% Similarity=0.144 Sum_probs=94.3
Q ss_pred cCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHH-cC-CHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCHHH
Q 047934 186 DGLIQEAMKLFGLMRE-KGTIPEVVIYTAVVDGFCK-AQ-KFDDAKRIFRKMQSN-GIAPNAFSYNLLIQGLYKCNKLEE 261 (344)
Q Consensus 186 ~g~~~~A~~lf~~M~~-~g~~pd~~tyn~LI~ay~k-~g-~~e~A~~vf~~M~~~-gi~pd~~tyn~LI~ay~k~g~~~~ 261 (344)
+..+.+|+.+|+.... ..+--|..+...|+..... .+ ....-.++.+.+... |-.++..+-..+|..+++.+++..
T Consensus 141 N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~k 220 (292)
T PF13929_consen 141 NKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNK 220 (292)
T ss_pred hHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHH
Confidence 3345566776663222 2355577777777776665 22 334444455555432 567788888889999999999999
Q ss_pred HHHHHHHHHHc-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH-----HHHCCCcccHHHHHHHHhccC
Q 047934 262 AVEYCIEMLEA-GHSPNVTTFVGLVDGLCRERGVEKAQSVIAT-----LKEKGFLVNDKAVREFLDKKA 324 (344)
Q Consensus 262 A~~lf~~M~~~-gv~pd~~ty~~lL~a~~~~G~~e~a~~l~~~-----M~~~Gi~p~~~~~~~Ll~~ya 324 (344)
-+++++..... +-.-|..-|..+|..-...|+.+-..++.++ +++.|+..+...-..|-+.+.
T Consensus 221 l~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF~ 289 (292)
T PF13929_consen 221 LFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELFK 289 (292)
T ss_pred HHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHHH
Confidence 88888877655 5566888899999999999998888777774 455677777666655554443
No 203
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=87.47 E-value=0.034 Score=46.28 Aligned_cols=83 Identities=11% Similarity=0.153 Sum_probs=43.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 047934 179 MLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNK 258 (344)
Q Consensus 179 li~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~ 258 (344)
+|..+.+.+..+.+..+++.+...+...+....+.|+..|++.+..+..+.+++.. +..-...++..|-+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcch
Confidence 55555556666666666666665554455666666666666665555555555411 11222345555555555
Q ss_pred HHHHHHHHHH
Q 047934 259 LEEAVEYCIE 268 (344)
Q Consensus 259 ~~~A~~lf~~ 268 (344)
+++|.-++.+
T Consensus 86 ~~~a~~Ly~~ 95 (143)
T PF00637_consen 86 YEEAVYLYSK 95 (143)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHH
Confidence 5555554444
No 204
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=86.99 E-value=17 Score=34.88 Aligned_cols=55 Identities=20% Similarity=0.159 Sum_probs=38.7
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 047934 238 GIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRERG 293 (344)
Q Consensus 238 gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~ 293 (344)
++......|-.++.+|+..--.++|+..+.+-.+.|+- +..+|.-=++-+++...
T Consensus 294 ~~~~~~~l~kq~l~~~A~d~aieD~i~~L~~~~r~G~i-~l~~yLr~VR~lsReQF 348 (365)
T KOG2391|consen 294 AIECTAPLYKQILECYALDLAIEDAIYSLGKSLRDGVI-DLDQYLRHVRLLSREQF 348 (365)
T ss_pred hhhccchHHHHHHHhhhhhhHHHHHHHHHHHHHhcCee-eHHHHHHHHHHHHHHHH
Confidence 34556677888999999888888888888887777743 56666555555555443
No 205
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=86.87 E-value=11 Score=35.75 Aligned_cols=94 Identities=16% Similarity=0.105 Sum_probs=51.6
Q ss_pred CCCCCHHHHHHHHHHHHHCCCC-CCHHH-HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 047934 152 PISEPPQEADEIFKKMKETGLI-PNAVA-MLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKR 229 (344)
Q Consensus 152 ~~sg~~~~A~~lf~~M~~~gi~-p~~~t-li~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~ 229 (344)
.+++++++|+..|.+..+-.=. +.+.+ =-.+|++.|..+.|.+--+.-..-. +.-..+|..|=.+|...|++++|.+
T Consensus 92 m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~A~~ 170 (304)
T KOG0553|consen 92 MKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEEAIE 170 (304)
T ss_pred HHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHHHHH
Confidence 3456677777777666653211 11111 2456667777666666544433321 1124566666677777777777777
Q ss_pred HHHHHHHCCCCCCHHHHHH
Q 047934 230 IFRKMQSNGIAPNAFSYNL 248 (344)
Q Consensus 230 vf~~M~~~gi~pd~~tyn~ 248 (344)
-|++..+ +.|+-.+|-.
T Consensus 171 aykKaLe--ldP~Ne~~K~ 187 (304)
T KOG0553|consen 171 AYKKALE--LDPDNESYKS 187 (304)
T ss_pred HHHhhhc--cCCCcHHHHH
Confidence 7665544 4566555543
No 206
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.80 E-value=3.7 Score=43.79 Aligned_cols=140 Identities=16% Similarity=0.148 Sum_probs=64.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 047934 150 NEPISEPPQEADEIFKKMKETGLIPNAVAMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKR 229 (344)
Q Consensus 150 ~~~~sg~~~~A~~lf~~M~~~gi~p~~~tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~ 229 (344)
..|..|++++|..-+-+.. |.. +..-+|.-|..+.++.+--.+++.+.+.|+. +...-+.||.+|.|.++.+...+
T Consensus 377 ~Ly~Kgdf~~A~~qYI~tI--~~l-e~s~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~e 452 (933)
T KOG2114|consen 377 YLYGKGDFDEATDQYIETI--GFL-EPSEVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTE 452 (933)
T ss_pred HHHhcCCHHHHHHHHHHHc--ccC-ChHHHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHH
Confidence 3344455555544443322 211 2233555555555555555555555555543 33444566666666666666555
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 047934 230 IFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRERGVEKAQSVIATL 304 (344)
Q Consensus 230 vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~~e~a~~l~~~M 304 (344)
+.+... .|.- .+-.-..+..|-+.+-.++|..+-..... .+.....++ -..+++++|.+.+..|
T Consensus 453 fI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~~-----he~vl~ill---e~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 453 FISKCD-KGEW--FFDVETALEILRKSNYLDEAELLATKFKK-----HEWVLDILL---EDLHNYEEALRYISSL 516 (933)
T ss_pred HHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHhcc-----CHHHHHHHH---HHhcCHHHHHHHHhcC
Confidence 554433 2211 00122344444455555555444333222 222222232 2356777777666654
No 207
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=86.78 E-value=20 Score=35.98 Aligned_cols=134 Identities=17% Similarity=0.232 Sum_probs=84.3
Q ss_pred CCCHHHHHHHHHHHHHCCCC-CCHH-------HHHHHHHHcCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHcCCH
Q 047934 154 SEPPQEADEIFKKMKETGLI-PNAV-------AMLDGLCKDGLIQEAMKLFGLMRE-KGTIPEVVIYTAVVDGFCKAQKF 224 (344)
Q Consensus 154 sg~~~~A~~lf~~M~~~gi~-p~~~-------tli~~~~k~g~~~~A~~lf~~M~~-~g~~pd~~tyn~LI~ay~k~g~~ 224 (344)
.+++.+|.++|.+.-++--. |..- -+|++|.... .+.......++.+ .|-.+-...|-+|+. -+.+.+
T Consensus 19 q~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~n-ld~Me~~l~~l~~~~~~s~~l~LF~~L~~--Y~~k~~ 95 (549)
T PF07079_consen 19 QKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNN-LDLMEKQLMELRQQFGKSAYLPLFKALVA--YKQKEY 95 (549)
T ss_pred HhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhh-HHHHHHHHHHHHHhcCCchHHHHHHHHHH--HHhhhH
Confidence 67899999999998765322 2111 3677777654 3444444444443 343344444444443 477788
Q ss_pred HHHHHHHHHHHHC--CCCC------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCCHHHHHHHHH
Q 047934 225 DDAKRIFRKMQSN--GIAP------------NAFSYNLLIQGLYKCNKLEEAVEYCIEMLEA----GHSPNVTTFVGLVD 286 (344)
Q Consensus 225 e~A~~vf~~M~~~--gi~p------------d~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~----gv~pd~~ty~~lL~ 286 (344)
++|.+.+..=.++ +.++ |-+-=+..+.++.+.|.+.++..++++|... ...-+..+|+.++-
T Consensus 96 ~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vl 175 (549)
T PF07079_consen 96 RKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVL 175 (549)
T ss_pred HHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHH
Confidence 8888887665543 2222 2222356788888999999999998888764 34478888888666
Q ss_pred HHHH
Q 047934 287 GLCR 290 (344)
Q Consensus 287 a~~~ 290 (344)
.+++
T Consensus 176 mlsr 179 (549)
T PF07079_consen 176 MLSR 179 (549)
T ss_pred HHhH
Confidence 6654
No 208
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=86.55 E-value=6.1 Score=33.31 Aligned_cols=70 Identities=13% Similarity=0.051 Sum_probs=48.9
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCCHH-----HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 047934 152 PISEPPQEADEIFKKMKETGLIPNAV-----AMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKA 221 (344)
Q Consensus 152 ~~sg~~~~A~~lf~~M~~~gi~p~~~-----tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~ 221 (344)
..+|++++|.+.|+.+..+--...+. -++.+|.+.+++++|...++.+++..-...-+-|.-.+.+++.-
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~ 95 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYY 95 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHH
Confidence 34778889999999888763222222 37888889999999999998888876444445566666665543
No 209
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.72 E-value=6.6 Score=37.58 Aligned_cols=99 Identities=18% Similarity=0.234 Sum_probs=46.3
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC---CCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 047934 203 GTIPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQSN---GIAP--NAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPN 277 (344)
Q Consensus 203 g~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~---gi~p--d~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd 277 (344)
|....+.+...++..-.....+++++..+-+++.. ...+ ..++|--++ -.-+.++++.++..=...|+-||
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irll----lky~pq~~i~~l~npIqYGiF~d 134 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLL----LKYDPQKAIYTLVNPIQYGIFPD 134 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHH----HccChHHHHHHHhCcchhccccc
Confidence 33444445555555444445555555555444332 1111 112222221 12344455555555555555556
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 047934 278 VTTFVGLVDGLCRERGVEKAQSVIATLK 305 (344)
Q Consensus 278 ~~ty~~lL~a~~~~G~~e~a~~l~~~M~ 305 (344)
..|++.+|+.+.+.++..+|..+.-.|.
T Consensus 135 qf~~c~l~D~flk~~n~~~aa~vvt~~~ 162 (418)
T KOG4570|consen 135 QFTFCLLMDSFLKKENYKDAASVVTEVM 162 (418)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 6666666666555555555554444443
No 210
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=85.67 E-value=26 Score=31.30 Aligned_cols=122 Identities=12% Similarity=0.135 Sum_probs=87.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHH
Q 047934 178 AMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNG---IAPNAFSYNLLIQGLY 254 (344)
Q Consensus 178 tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~g---i~pd~~tyn~LI~ay~ 254 (344)
.|-.++...|+..||...|.+-..-=+.-|....-.+-.+....++...|..+++++.+.. -.|| +.-.+-..|+
T Consensus 94 rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~Ll~aR~la 171 (251)
T COG4700 94 RLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GHLLFARTLA 171 (251)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--chHHHHHHHH
Confidence 5888999999999999999887654456678888888888888999999999999988753 2333 4455667788
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 047934 255 KCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRERGVEKAQSVIAT 303 (344)
Q Consensus 255 k~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~~e~a~~l~~~ 303 (344)
..|...+|..-|+..... -|+...-.---..+++.|+.+++..-+.+
T Consensus 172 a~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~ 218 (251)
T COG4700 172 AQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVA 218 (251)
T ss_pred hcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 889999999999888765 34433322233344567766665443333
No 211
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=85.63 E-value=15 Score=37.26 Aligned_cols=79 Identities=11% Similarity=0.066 Sum_probs=53.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHH
Q 047934 213 AVVDGFCKAQKFDDAKRIFRKMQSNGIAP-NAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPN--VTTFVGLVDGLC 289 (344)
Q Consensus 213 ~LI~ay~k~g~~e~A~~vf~~M~~~gi~p-d~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd--~~ty~~lL~a~~ 289 (344)
.|-.++-+.|+.++|.+.|++|.+.--.. ..-..-.||.+|...+...++..++.+-.+-. .|. ..+|+..|-...
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~-lpkSAti~YTaALLkaR 342 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDIS-LPKSATICYTAALLKAR 342 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcccc-CCchHHHHHHHHHHHHH
Confidence 34444557799999999999997642121 33466789999999999999999998864322 233 455776665544
Q ss_pred HcC
Q 047934 290 RER 292 (344)
Q Consensus 290 ~~G 292 (344)
..+
T Consensus 343 av~ 345 (539)
T PF04184_consen 343 AVG 345 (539)
T ss_pred hhc
Confidence 444
No 212
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=85.27 E-value=21 Score=31.54 Aligned_cols=59 Identities=14% Similarity=0.152 Sum_probs=43.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 047934 179 MLDGLCKDGLIQEAMKLFGLMREKG--TIPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQSN 237 (344)
Q Consensus 179 li~~~~k~g~~~~A~~lf~~M~~~g--~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~ 237 (344)
.-..+...|++++|.+.|+.+...- -+--....-.+..+|-+.|++++|...|+.+.+.
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3456678899999999999998762 1222344556788889999999999999998775
No 213
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.27 E-value=5.3 Score=38.21 Aligned_cols=82 Identities=17% Similarity=0.230 Sum_probs=64.0
Q ss_pred CCCHHHHHHHHHHHHHCC---CCCCHH--HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 047934 154 SEPPQEADEIFKKMKETG---LIPNAV--AMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAK 228 (344)
Q Consensus 154 sg~~~~A~~lf~~M~~~g---i~p~~~--tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~ 228 (344)
...+++|+.++-.++..- ..|.|. ++++.|. .-+.++++.+...=..-|+-||.++++.||+.+.+.+++.+|.
T Consensus 77 ~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa 155 (418)
T KOG4570|consen 77 REEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAA 155 (418)
T ss_pred ccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH-ccChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHH
Confidence 346889998888877542 344554 4555444 4567799999998889999999999999999999999999888
Q ss_pred HHHHHHHH
Q 047934 229 RIFRKMQS 236 (344)
Q Consensus 229 ~vf~~M~~ 236 (344)
++...|..
T Consensus 156 ~vvt~~~~ 163 (418)
T KOG4570|consen 156 SVVTEVMM 163 (418)
T ss_pred HHHHHHHH
Confidence 87766654
No 214
>PRK15331 chaperone protein SicA; Provisional
Probab=85.26 E-value=9.9 Score=32.86 Aligned_cols=89 Identities=11% Similarity=-0.030 Sum_probs=53.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 047934 181 DGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLE 260 (344)
Q Consensus 181 ~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~ 260 (344)
..+-..|++++|..+|..+...+.- +..-|..|=.+|-..+.+++|...|...-..+. -|...+-.+-.+|...|+.+
T Consensus 45 y~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 45 YEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHH
Confidence 3344567777777777766654322 344445555555566677777777766544432 13333444556666777777
Q ss_pred HHHHHHHHHHH
Q 047934 261 EAVEYCIEMLE 271 (344)
Q Consensus 261 ~A~~lf~~M~~ 271 (344)
.|+..|+...+
T Consensus 123 ~A~~~f~~a~~ 133 (165)
T PRK15331 123 KARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHh
Confidence 77777766655
No 215
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=85.03 E-value=12 Score=31.53 Aligned_cols=52 Identities=13% Similarity=0.135 Sum_probs=23.0
Q ss_pred HcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 047934 220 KAQKFDDAKRIFRKMQSNG--IAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLE 271 (344)
Q Consensus 220 k~g~~e~A~~vf~~M~~~g--i~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~ 271 (344)
+.|++++|.+.|+.+..+- -+-....---|+.+|.+.+++++|...+++..+
T Consensus 22 ~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFir 75 (142)
T PF13512_consen 22 QKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIR 75 (142)
T ss_pred HhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3444555555555544430 011122333445555555555555555555444
No 216
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=84.59 E-value=27 Score=34.35 Aligned_cols=61 Identities=20% Similarity=0.149 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 047934 245 SYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRERGVEKAQSVIATLKE 306 (344)
Q Consensus 245 tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~~e~a~~l~~~M~~ 306 (344)
++..|..+|.+.+.+.+|++..+..+..+ ..|+...--=-.+|...|+++.|+..|..+.+
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k 319 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALK 319 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 45555566666666666666666555442 22444433344455556666666666666655
No 217
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=84.38 E-value=3.5 Score=38.52 Aligned_cols=137 Identities=21% Similarity=0.257 Sum_probs=71.7
Q ss_pred CHHHHHHHHHHHHHC-CCCCCHH-------HHHHHHHHcCCHHHHHHHHHHHHH---cCCCC--CHHHHHHHHHHHHHcC
Q 047934 156 PPQEADEIFKKMKET-GLIPNAV-------AMLDGLCKDGLIQEAMKLFGLMRE---KGTIP--EVVIYTAVVDGFCKAQ 222 (344)
Q Consensus 156 ~~~~A~~lf~~M~~~-gi~p~~~-------tli~~~~k~g~~~~A~~lf~~M~~---~g~~p--d~~tyn~LI~ay~k~g 222 (344)
++++|..+|++.-.. ...-+|. .....+.+.++..+|-..|.++.. .. .| -+..|...+..|.+.|
T Consensus 30 ~~e~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G 108 (282)
T PF14938_consen 30 DYEEAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAG 108 (282)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcC
Confidence 688888888865431 0000111 123344444444444444433221 11 11 1233444455555555
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHc----CCC-CCHHHHHHHHHHHHHcCCHHH
Q 047934 223 KFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKC-NKLEEAVEYCIEMLEA----GHS-PNVTTFVGLVDGLCRERGVEK 296 (344)
Q Consensus 223 ~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~-g~~~~A~~lf~~M~~~----gv~-pd~~ty~~lL~a~~~~G~~e~ 296 (344)
++..|-+++.. +-..|-.. |+++.|++.|++-.+. +-. --..++.-+...+.+.|++++
T Consensus 109 ~~~~aA~~~~~---------------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~ 173 (282)
T PF14938_consen 109 RFSQAAKCLKE---------------LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEE 173 (282)
T ss_dssp -HHHHHHHHHH---------------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHH
T ss_pred cHHHHHHHHHH---------------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHH
Confidence 55554444444 33445556 7899999888876542 311 013345667778899999999
Q ss_pred HHHHHHHHHHCC
Q 047934 297 AQSVIATLKEKG 308 (344)
Q Consensus 297 a~~l~~~M~~~G 308 (344)
|.++|+++...-
T Consensus 174 A~~~~e~~~~~~ 185 (282)
T PF14938_consen 174 AIEIYEEVAKKC 185 (282)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHHHh
Confidence 999999988753
No 218
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=84.27 E-value=17 Score=31.65 Aligned_cols=97 Identities=12% Similarity=0.186 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCCHHHHHH
Q 047934 209 VIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPN--AFSYNLLIQGLYKCNKLEEAVEYCIEMLEA---GHSPNVTTFVG 283 (344)
Q Consensus 209 ~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd--~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~---gv~pd~~ty~~ 283 (344)
..+..+-+.|++.|+.++|.+.|.++.+....+. ...+-.+|......+++..+.....+.... |-..+...--.
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 5667788889999999999999999887644443 446678888888889998888877766543 22223322223
Q ss_pred HHHHHH--HcCCHHHHHHHHHHHH
Q 047934 284 LVDGLC--RERGVEKAQSVIATLK 305 (344)
Q Consensus 284 lL~a~~--~~G~~e~a~~l~~~M~ 305 (344)
+..|+. ..+++.+|-++|-+..
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccC
Confidence 333332 4678888877777654
No 219
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=84.10 E-value=8.3 Score=38.61 Aligned_cols=100 Identities=12% Similarity=0.029 Sum_probs=76.2
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH
Q 047934 205 IPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNA----FSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTT 280 (344)
Q Consensus 205 ~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~----~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~t 280 (344)
+.+...++.+-.+|.+.|++++|...|++..+. .|+. .+|..+-.+|++.|+.++|++.+++..+.+ ...
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels----n~~ 145 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY----NLK 145 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc----chh
Confidence 346789999999999999999999999997775 5663 469999999999999999999999998852 112
Q ss_pred HHHHHH--HHHHcCCHHHHHHHHHHHHHCCCc
Q 047934 281 FVGLVD--GLCRERGVEKAQSVIATLKEKGFL 310 (344)
Q Consensus 281 y~~lL~--a~~~~G~~e~a~~l~~~M~~~Gi~ 310 (344)
|..+.. .+....+.++..++++++.+.|..
T Consensus 146 f~~i~~DpdL~plR~~pef~eLlee~rk~G~~ 177 (453)
T PLN03098 146 FSTILNDPDLAPFRASPEFKELQEEARKGGED 177 (453)
T ss_pred HHHHHhCcchhhhcccHHHHHHHHHHHHhCCc
Confidence 322211 111233456888899999988864
No 220
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=83.61 E-value=7.4 Score=30.66 Aligned_cols=44 Identities=9% Similarity=0.053 Sum_probs=23.2
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 047934 262 AVEYCIEMLEAGHSPNVTTFVGLVDGLCRERGVEKAQSVIATLK 305 (344)
Q Consensus 262 A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~~e~a~~l~~~M~ 305 (344)
+.+-++.+....+.|+.....+.|+||.+.+++..|..+|+-.+
T Consensus 26 ~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 26 LRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33334444444555555555555555555555555555555444
No 221
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=83.49 E-value=48 Score=32.60 Aligned_cols=153 Identities=12% Similarity=0.018 Sum_probs=97.2
Q ss_pred CCCHHHHHHHHHHHHHCCCC--CCH-H---HHHHHHHH---cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----
Q 047934 154 SEPPQEADEIFKKMKETGLI--PNA-V---AMLDGLCK---DGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCK---- 220 (344)
Q Consensus 154 sg~~~~A~~lf~~M~~~gi~--p~~-~---tli~~~~k---~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k---- 220 (344)
..+++..+++++.|..-... ++. . -+.-++-+ .|+-++|++++..+....-.++..||..+-..|-.
T Consensus 154 iqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~ 233 (374)
T PF13281_consen 154 IQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLE 233 (374)
T ss_pred hhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHH
Confidence 55799999999998875211 111 1 24555566 78999999999997766667788888766655532
Q ss_pred -----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH----HHHHHH----HHHHHcCC---CCCHHHHHHH
Q 047934 221 -----AQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLE----EAVEYC----IEMLEAGH---SPNVTTFVGL 284 (344)
Q Consensus 221 -----~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~----~A~~lf----~~M~~~gv---~pd~~ty~~l 284 (344)
....++|...|.+--+. .||..+--.+...+.-.|.-. ++.++- ....+.|. ..|.-.+.++
T Consensus 234 s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl 311 (374)
T PF13281_consen 234 SNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATL 311 (374)
T ss_pred cCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHH
Confidence 12366777777654433 355443323333333334321 223332 12223332 4566778899
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCC
Q 047934 285 VDGLCRERGVEKAQSVIATLKEKG 308 (344)
Q Consensus 285 L~a~~~~G~~e~a~~l~~~M~~~G 308 (344)
+.++.-.|+.++|.+..+.|.+..
T Consensus 312 ~Ea~vL~~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 312 LEASVLAGDYEKAIQAAEKAFKLK 335 (374)
T ss_pred HHHHHHcCCHHHHHHHHHHHhhcC
Confidence 999999999999999999999773
No 222
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=83.22 E-value=18 Score=34.18 Aligned_cols=135 Identities=6% Similarity=0.081 Sum_probs=92.4
Q ss_pred CCCHHHHHHHHHHHHH-CCCCCCHH---HHHHHHHH-cC-CHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHcCCHHH
Q 047934 154 SEPPQEADEIFKKMKE-TGLIPNAV---AMLDGLCK-DG-LIQEAMKLFGLMRE-KGTIPEVVIYTAVVDGFCKAQKFDD 226 (344)
Q Consensus 154 sg~~~~A~~lf~~M~~-~gi~p~~~---tli~~~~k-~g-~~~~A~~lf~~M~~-~g~~pd~~tyn~LI~ay~k~g~~e~ 226 (344)
+..+.+|+++|+...- ..+.-|.. .++..+.. .+ ....-.++.+.+.. .+-.++..+...+|..+++.+++..
T Consensus 141 N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~k 220 (292)
T PF13929_consen 141 NKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNK 220 (292)
T ss_pred hHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHH
Confidence 3457788888884332 22333332 24455444 22 23333344444443 3567888999999999999999999
Q ss_pred HHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH-----HHHcCCCCCHHHHHHHHHHH
Q 047934 227 AKRIFRKMQSN-GIAPNAFSYNLLIQGLYKCNKLEEAVEYCIE-----MLEAGHSPNVTTFVGLVDGL 288 (344)
Q Consensus 227 A~~vf~~M~~~-gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~-----M~~~gv~pd~~ty~~lL~a~ 288 (344)
..++++..... +..-|..-|..+|..-.+.|+..-..++.++ +++.++..+...-..+-..+
T Consensus 221 l~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF 288 (292)
T PF13929_consen 221 LFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELF 288 (292)
T ss_pred HHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHH
Confidence 99999987765 6777999999999999999999888887775 34556766666655544443
No 223
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=82.99 E-value=22 Score=28.34 Aligned_cols=44 Identities=9% Similarity=0.036 Sum_probs=21.5
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 047934 262 AVEYCIEMLEAGHSPNVTTFVGLVDGLCRERGVEKAQSVIATLK 305 (344)
Q Consensus 262 A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~~e~a~~l~~~M~ 305 (344)
..+-++.+....+.|+.....+.|.||.+.+++..|.++|+-++
T Consensus 29 ~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK 72 (108)
T PF02284_consen 29 LRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIK 72 (108)
T ss_dssp HHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33334444444555555555566666666666666655555554
No 224
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=82.45 E-value=45 Score=34.07 Aligned_cols=124 Identities=15% Similarity=0.151 Sum_probs=78.4
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHH-------------------------HHHHHHHHHcCCHHHHHHHHHHHHH
Q 047934 182 GLCKDGLIQEAMKLFGLMREKGTIPEVVIY-------------------------TAVVDGFCKAQKFDDAKRIFRKMQS 236 (344)
Q Consensus 182 ~~~k~g~~~~A~~lf~~M~~~g~~pd~~ty-------------------------n~LI~ay~k~g~~e~A~~vf~~M~~ 236 (344)
+|.+.++.+.|..+|.........||...= -.=-..+.+.|++..|..-|.++..
T Consensus 307 a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIk 386 (539)
T KOG0548|consen 307 AYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIK 386 (539)
T ss_pred hhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Confidence 666677777777777765444333332221 0112335677899999999999988
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 047934 237 NGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPN-VTTFVGLVDGLCRERGVEKAQSVIATLKEKG 308 (344)
Q Consensus 237 ~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd-~~ty~~lL~a~~~~G~~e~a~~l~~~M~~~G 308 (344)
.. +-|...|+..-.||.+.+.+..|++-.+...+. .|+ ...|.-=..++....+++.|.+.|.+-.+..
T Consensus 387 r~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 387 RD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIEL--DPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred cC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 75 447889999999999999999998876666655 232 1122222222223346677777777666553
No 225
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=81.84 E-value=0.28 Score=40.69 Aligned_cols=124 Identities=15% Similarity=0.139 Sum_probs=78.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 047934 213 AVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRER 292 (344)
Q Consensus 213 ~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~G 292 (344)
.+|..|.+.+..+.+..+++.+...+..-+....+.++..|++.+..+..+++++.. +..-...++..|.+.|
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~ 84 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHG 84 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcc
Confidence 356777777888888888888887766667888888888888888777777777621 1133345777777778
Q ss_pred CHHHHHHHHHHHHHCCCcc----cHHHHHHHHhccCCCC-hHHHHHHhcCccCCCC
Q 047934 293 GVEKAQSVIATLKEKGFLV----NDKAVREFLDKKAPFS-SSVWEAIFGKKTLQKP 343 (344)
Q Consensus 293 ~~e~a~~l~~~M~~~Gi~p----~~~~~~~Ll~~yak~g-~~~W~all~~~~~~~~ 343 (344)
.++++..++..+....-.. ....+...++.+.+.+ ...|..++..|--+++
T Consensus 85 l~~~a~~Ly~~~~~~~~al~i~~~~~~~~~a~e~~~~~~~~~l~~~l~~~~l~~~~ 140 (143)
T PF00637_consen 85 LYEEAVYLYSKLGNHDEALEILHKLKDYEEAIEYAKKVDDPELWEQLLKYCLDSKP 140 (143)
T ss_dssp SHHHHHHHHHCCTTHTTCSSTSSSTHCSCCCTTTGGGCSSSHHHHHHHHHHCTSTC
T ss_pred hHHHHHHHHHHcccHHHHHHHHHHHccHHHHHHHHHhcCcHHHHHHHHHHHHhcCc
Confidence 8888877777654332111 1122223334444555 3567777766655444
No 226
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=81.77 E-value=37 Score=31.64 Aligned_cols=97 Identities=21% Similarity=0.349 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCC-HHHH
Q 047934 208 VVIYTAVVDGFCKAQKFDDAKRIFRKMQSNG----IAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEA-GHSPN-VTTF 281 (344)
Q Consensus 208 ~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~g----i~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~-gv~pd-~~ty 281 (344)
...|+.-++.| +.|++.+|...|....+.. ..|| .+=.|-.++...|+.++|..+|..+.+. +-.|- ..++
T Consensus 142 ~~~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~n--A~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdal 218 (262)
T COG1729 142 TKLYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPN--AYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDAL 218 (262)
T ss_pred hHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccch--hHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHH
Confidence 33688888865 6677999999999988762 2333 3445888999999999999999998764 33332 3566
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHC
Q 047934 282 VGLVDGLCRERGVEKAQSVIATLKEK 307 (344)
Q Consensus 282 ~~lL~a~~~~G~~e~a~~l~~~M~~~ 307 (344)
--|-....+.|+.++|..+++++.+.
T Consensus 219 lKlg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 219 LKLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 66777778899999999999998875
No 227
>PRK15331 chaperone protein SicA; Provisional
Probab=80.66 E-value=37 Score=29.38 Aligned_cols=87 Identities=13% Similarity=0.033 Sum_probs=67.5
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 047934 219 CKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRERGVEKAQ 298 (344)
Q Consensus 219 ~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~~e~a~ 298 (344)
-..|++++|+.+|.-+...+.- +..-|..|-.+|-..+++++|..+|........ -|...+-..-.++...|+.+.|+
T Consensus 48 y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A~ 125 (165)
T PRK15331 48 YNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKAR 125 (165)
T ss_pred HHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHHH
Confidence 4679999999999998775322 455677787888888999999999988766543 24444555667788899999999
Q ss_pred HHHHHHHHC
Q 047934 299 SVIATLKEK 307 (344)
Q Consensus 299 ~l~~~M~~~ 307 (344)
+.|......
T Consensus 126 ~~f~~a~~~ 134 (165)
T PRK15331 126 QCFELVNER 134 (165)
T ss_pred HHHHHHHhC
Confidence 999988874
No 228
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=80.45 E-value=37 Score=34.18 Aligned_cols=108 Identities=10% Similarity=0.062 Sum_probs=81.8
Q ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 047934 175 NAVAMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLY 254 (344)
Q Consensus 175 ~~~tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~ 254 (344)
|..+=.....+.|+++.|.++-++. .+...|..|=+...+.|+++.|++.|.+.. -|..|+--|.
T Consensus 320 D~~~rFeLAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~---------d~~~L~lLy~ 384 (443)
T PF04053_consen 320 DPDHRFELALQLGNLDIALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAK---------DFSGLLLLYS 384 (443)
T ss_dssp -HHHHHHHHHHCT-HHHHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHH
T ss_pred ChHHHhHHHHhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhc---------CccccHHHHH
Confidence 3445678888999999999876543 377899999999999999999999998865 3667777788
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 047934 255 KCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRERGVEKAQSVIAT 303 (344)
Q Consensus 255 k~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~~e~a~~l~~~ 303 (344)
-.|+.+...++.+.....| -++....++.-.|+.++..+++.+
T Consensus 385 ~~g~~~~L~kl~~~a~~~~------~~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 385 STGDREKLSKLAKIAEERG------DINIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHcc------CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 8999888888877766665 256667777778999888877654
No 229
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=80.21 E-value=28 Score=29.42 Aligned_cols=94 Identities=10% Similarity=0.054 Sum_probs=71.4
Q ss_pred HHHHHCCCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHHHcCC-HHHHHHHHHH
Q 047934 232 RKMQSNGIAPNAF--SYNLLIQGLYKCNKLEEAVEYCIEMLEAG-----HSPNVTTFVGLVDGLCRERG-VEKAQSVIAT 303 (344)
Q Consensus 232 ~~M~~~gi~pd~~--tyn~LI~ay~k~g~~~~A~~lf~~M~~~g-----v~pd~~ty~~lL~a~~~~G~-~e~a~~l~~~ 303 (344)
..|.+.+..+++. ..|+++.-.+..+.+...+.+++.+.... -..+..+|.+++.+.++..- --.+..+|+.
T Consensus 26 ~y~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~ 105 (145)
T PF13762_consen 26 PYMQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNF 105 (145)
T ss_pred HHhhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHH
Confidence 3455556666653 46788888888889988888888774321 13467789999999977766 4467999999
Q ss_pred HHHCCCcccHHHHHHHHhccCC
Q 047934 304 LKEKGFLVNDKAVREFLDKKAP 325 (344)
Q Consensus 304 M~~~Gi~p~~~~~~~Ll~~yak 325 (344)
|++.+.+++...|..+|.++.+
T Consensus 106 Lk~~~~~~t~~dy~~li~~~l~ 127 (145)
T PF13762_consen 106 LKKNDIEFTPSDYSCLIKAALR 127 (145)
T ss_pred HHHcCCCCCHHHHHHHHHHHHc
Confidence 9999999999999999987653
No 230
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=80.04 E-value=18 Score=31.51 Aligned_cols=93 Identities=18% Similarity=0.226 Sum_probs=64.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH--
Q 047934 178 AMLDGLCKDGLIQEAMKLFGLMREKGTIP--EVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGL-- 253 (344)
Q Consensus 178 tli~~~~k~g~~~~A~~lf~~M~~~g~~p--d~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay-- 253 (344)
.+..-|++.|+.++|++.|..+.+....+ -...+=.+|..+...+++..+.....+....-..........=+.+|
T Consensus 41 ~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~~~g 120 (177)
T PF10602_consen 41 DLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKVYEG 120 (177)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHHH
Confidence 47889999999999999999998875443 34566788899999999999888887765532222212111112221
Q ss_pred ---HHcCCHHHHHHHHHHHH
Q 047934 254 ---YKCNKLEEAVEYCIEML 270 (344)
Q Consensus 254 ---~k~g~~~~A~~lf~~M~ 270 (344)
...+++.+|-++|-+..
T Consensus 121 L~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 121 LANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHhchHHHHHHHHHccC
Confidence 24678888888887764
No 231
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=79.38 E-value=59 Score=30.98 Aligned_cols=159 Identities=15% Similarity=0.128 Sum_probs=103.6
Q ss_pred HHHHHHHHHHHHHCC-CCCCHHHHHHHHHHcCCHHHHHHHHHHH-------HH-------------------cCCCCCHH
Q 047934 157 PQEADEIFKKMKETG-LIPNAVAMLDGLCKDGLIQEAMKLFGLM-------RE-------------------KGTIPEVV 209 (344)
Q Consensus 157 ~~~A~~lf~~M~~~g-i~p~~~tli~~~~k~g~~~~A~~lf~~M-------~~-------------------~g~~pd~~ 209 (344)
-.+|+++|.-+.+.. -..+..-+|..+-...+..+|...+.-. .. .+.+.|+.
T Consensus 149 s~KA~ELFayLv~hkgk~v~~~~~ie~lwpe~D~kka~s~lhTtvyqlRKaLs~L~~ne~vts~d~~Ykld~~~~k~Dv~ 228 (361)
T COG3947 149 SRKALELFAYLVEHKGKEVTSWEAIEALWPEKDEKKASSLLHTTVYQLRKALSRLNANEAVTSQDRKYKLDAGLPKYDVQ 228 (361)
T ss_pred hhHHHHHHHHHHHhcCCcccHhHHHHHHccccchhhHHHHHHHHHHHHHHHhchhccCceEEEcCCceEEecCCccccHH
Confidence 468999999888754 3333344666666666666666555422 11 13456777
Q ss_pred HHHHHHHHHHHcC-CHHHHHHHHHHHHHCCCCC--------C---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 047934 210 IYTAVVDGFCKAQ-KFDDAKRIFRKMQSNGIAP--------N---------AFSYNLLIQGLYKCNKLEEAVEYCIEMLE 271 (344)
Q Consensus 210 tyn~LI~ay~k~g-~~e~A~~vf~~M~~~gi~p--------d---------~~tyn~LI~ay~k~g~~~~A~~lf~~M~~ 271 (344)
-|-..+.-..... .++++.++....+.. .-| | ..+.+..-..|..+|.+.+|..+.++...
T Consensus 229 e~es~~rqi~~inltide~kelv~~ykgd-yl~e~~y~Waedererle~ly~kllgkva~~yle~g~~neAi~l~qr~lt 307 (361)
T COG3947 229 EYESLARQIEAINLTIDELKELVGQYKGD-YLPEADYPWAEDERERLEQLYMKLLGKVARAYLEAGKPNEAIQLHQRALT 307 (361)
T ss_pred HHHHHhhhhhccccCHHHHHHHHHHhcCC-cCCccccccccchHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHhh
Confidence 7777777654443 366777776655321 111 1 12345566788899999999999988776
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCcccHHHHH
Q 047934 272 AGHSPNVTTFVGLVDGLCRERGVEKAQSVIATLKE-----KGFLVNDKAVR 317 (344)
Q Consensus 272 ~gv~pd~~ty~~lL~a~~~~G~~e~a~~l~~~M~~-----~Gi~p~~~~~~ 317 (344)
.. +.+...+-.++..++..|+--.+.+-++.|.+ .|+..+..++.
T Consensus 308 ld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsiee 357 (361)
T COG3947 308 LD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIEE 357 (361)
T ss_pred cC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHHH
Confidence 53 44777888999999999997777777666643 37777765543
No 232
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=78.71 E-value=8.4 Score=40.56 Aligned_cols=22 Identities=32% Similarity=0.487 Sum_probs=14.7
Q ss_pred CCccceeeeccccccccCccch
Q 047934 5 QGGIFIKLITNWKLHQSHPISI 26 (344)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~ 26 (344)
.|||+---+.|.-|-++++.+-
T Consensus 523 SG~I~rySl~nv~l~n~y~~n~ 544 (1189)
T KOG2041|consen 523 SGGIYRYSLNNVVLTNSYPVNP 544 (1189)
T ss_pred cCceEEEEecceeeeeccccCc
Confidence 4777777777777766666543
No 233
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.51 E-value=40 Score=31.74 Aligned_cols=127 Identities=15% Similarity=0.051 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHHCCCCCCH---HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-----HHHcCCHHHHH
Q 047934 157 PQEADEIFKKMKETGLIPNA---VAMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDG-----FCKAQKFDDAK 228 (344)
Q Consensus 157 ~~~A~~lf~~M~~~gi~p~~---~tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~a-----y~k~g~~e~A~ 228 (344)
+.-...++++..+++-.-+. ..+.+.-.+.|+.+.|..+|+...+..-+.|..+++.++.. |.-..++.+|.
T Consensus 193 y~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~ 272 (366)
T KOG2796|consen 193 YVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAH 272 (366)
T ss_pred hhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHH
Confidence 33444555555554311111 13566666789999999999988876666666666665543 34456788899
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 047934 229 RIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVD 286 (344)
Q Consensus 229 ~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~ 286 (344)
..|+++.+..- .|.+.-|.=.-+..-.|+..+|++.++.|+.. .|...+-++++-
T Consensus 273 r~~~~i~~~D~-~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es~~~ 327 (366)
T KOG2796|consen 273 RFFTEILRMDP-RNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHESVLF 327 (366)
T ss_pred HHHhhccccCC-CchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhhHHH
Confidence 99988877631 13444443333333468999999999999875 455555444433
No 234
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=78.08 E-value=64 Score=30.64 Aligned_cols=124 Identities=15% Similarity=0.102 Sum_probs=67.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 047934 180 LDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKL 259 (344)
Q Consensus 180 i~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~ 259 (344)
.......|++.+|..+|+......-. +...--.|..+|...|+.+.|..++..+...--.........-|..+.+....
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 44555667777777777766544221 23445567777777777777777777765432111122222233344444444
Q ss_pred HHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 047934 260 EEAVEYCIEMLEAGHSP-NVTTFVGLVDGLCRERGVEKAQSVIATLKEK 307 (344)
Q Consensus 260 ~~A~~lf~~M~~~gv~p-d~~ty~~lL~a~~~~G~~e~a~~l~~~M~~~ 307 (344)
.+...+-.+.... | |...-..+-..+...|+.++|.+.+-.+.++
T Consensus 220 ~~~~~l~~~~aad---Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 220 PEIQDLQRRLAAD---PDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred CCHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4444433333332 3 4444455666667777777776665555543
No 235
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=77.83 E-value=23 Score=38.29 Aligned_cols=109 Identities=15% Similarity=0.062 Sum_probs=77.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-C--------CCCCHHHHHHHH
Q 047934 180 LDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQSN-G--------IAPNAFSYNLLI 250 (344)
Q Consensus 180 i~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~-g--------i~pd~~tyn~LI 250 (344)
++-|..-|+.++|++-.+.++. ..+|..|-+||.+..++|-|.-.+..|... | -.++... .-..
T Consensus 735 FSfyvtiG~MD~AfksI~~IkS------~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~e-akvA 807 (1416)
T KOG3617|consen 735 FSFYVTIGSMDAAFKSIQFIKS------DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDE-AKVA 807 (1416)
T ss_pred eeEEEEeccHHHHHHHHHHHhh------hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchh-hHHH
Confidence 3456778999999988876654 478999999999999999999988888542 1 1222111 1111
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 047934 251 QGLYKCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRERGVEKAQSVIATL 304 (344)
Q Consensus 251 ~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~~e~a~~l~~~M 304 (344)
--....|.+++|+.++.+.+.. ..|=.-|-..|.+++|.++-+.=
T Consensus 808 vLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~ 852 (1416)
T KOG3617|consen 808 VLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETK 852 (1416)
T ss_pred HHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhc
Confidence 1124679999999999988764 44555566789999999887653
No 236
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=77.72 E-value=6 Score=24.57 Aligned_cols=23 Identities=26% Similarity=0.229 Sum_probs=13.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Q 047934 246 YNLLIQGLYKCNKLEEAVEYCIE 268 (344)
Q Consensus 246 yn~LI~ay~k~g~~~~A~~lf~~ 268 (344)
|+.|-..|.+.|++++|++++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 45555566666666666666655
No 237
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=77.56 E-value=47 Score=28.79 Aligned_cols=131 Identities=11% Similarity=0.202 Sum_probs=72.2
Q ss_pred HHHHHHHHHCCCCCCHH---HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHH
Q 047934 161 DEIFKKMKETGLIPNAV---AMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQ--KFDDAKRIFRKMQ 235 (344)
Q Consensus 161 ~~lf~~M~~~gi~p~~~---tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g--~~e~A~~vf~~M~ 235 (344)
.+.+..+.+.++.|+.. -+|+.+.+.|.+.. +..+...++-+|.......+-.+.... -...|.+++.++.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~ 89 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG 89 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh
Confidence 44555555667666533 46777777776553 334455566666665555543333221 1233444444443
Q ss_pred HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 047934 236 SNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRERGVEKAQSVIATLKEK 307 (344)
Q Consensus 236 ~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~~e~a~~l~~~M~~~ 307 (344)
. .+..+++.+...|++-+|+++....... +......++.+-.+.+|...-..++....++
T Consensus 90 ~--------~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 90 T--------AYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEER 149 (167)
T ss_pred h--------hHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 2 4556667777777777777776654222 2222344666666666666555555555543
No 238
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=77.01 E-value=49 Score=30.86 Aligned_cols=88 Identities=19% Similarity=0.208 Sum_probs=46.9
Q ss_pred HHHcCCHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHc
Q 047934 183 LCKDGLIQEAMKLFGLMREKG----TIPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQSN-GIAPN-AFSYNLLIQGLYKC 256 (344)
Q Consensus 183 ~~k~g~~~~A~~lf~~M~~~g----~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~-gi~pd-~~tyn~LI~ay~k~ 256 (344)
+.+.|++.+|.+.|....+.. +.||.. =-|-..+...|++++|-.+|..+.+. +-.|- ...+-=|-.+..+.
T Consensus 151 ~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~--yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l 228 (262)
T COG1729 151 LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAY--YWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRL 228 (262)
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCCcccchhH--HHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHh
Confidence 345566666666666666542 222222 22556666666666666666666553 11111 23344444455566
Q ss_pred CCHHHHHHHHHHHHHc
Q 047934 257 NKLEEAVEYCIEMLEA 272 (344)
Q Consensus 257 g~~~~A~~lf~~M~~~ 272 (344)
|+.++|..+|++..+.
T Consensus 229 ~~~d~A~atl~qv~k~ 244 (262)
T COG1729 229 GNTDEACATLQQVIKR 244 (262)
T ss_pred cCHHHHHHHHHHHHHH
Confidence 6666666666666543
No 239
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=76.88 E-value=12 Score=39.22 Aligned_cols=42 Identities=29% Similarity=0.322 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHcCCHHHHHHHHHH
Q 047934 157 PQEADEIFKKMKETGLIPNAVAMLDGLCKDGLIQEAMKLFGL 198 (344)
Q Consensus 157 ~~~A~~lf~~M~~~gi~p~~~tli~~~~k~g~~~~A~~lf~~ 198 (344)
+-+-..-+++|+++|-.|+..-+...|+-.|++.||-++|.+
T Consensus 616 ~L~li~EL~~~k~rge~P~~iLlA~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 616 YLELISELEERKKRGETPNDLLLADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHHhhhhHHHHHHHHHH
Confidence 333444456788889889887777777778888877777753
No 240
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=75.62 E-value=84 Score=32.45 Aligned_cols=141 Identities=12% Similarity=0.091 Sum_probs=98.1
Q ss_pred CHHHHHHHHHHHHH-CC--CCCCHHH-HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 047934 156 PPQEADEIFKKMKE-TG--LIPNAVA-MLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRIF 231 (344)
Q Consensus 156 ~~~~A~~lf~~M~~-~g--i~p~~~t-li~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf 231 (344)
.+.+..++|-++.. .+ +-|+.-+ |=..|--.|.++.|...|+...... +-|..+||.|=..++...+.++|..-|
T Consensus 409 ~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY 487 (579)
T KOG1125|consen 409 HLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAY 487 (579)
T ss_pred HHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHH
Confidence 46677788877764 34 4455544 4445567889999999999887642 236788999999999999999999999
Q ss_pred HHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHH---HcC------CCCCHHHHHHHHHHHHHcCCHHHHHH
Q 047934 232 RKMQSNGIAPN-AFSYNLLIQGLYKCNKLEEAVEYCIEML---EAG------HSPNVTTFVGLVDGLCRERGVEKAQS 299 (344)
Q Consensus 232 ~~M~~~gi~pd-~~tyn~LI~ay~k~g~~~~A~~lf~~M~---~~g------v~pd~~ty~~lL~a~~~~G~~e~a~~ 299 (344)
.+..+. .|. +.++-.|--+|...|.+++|.+.|-+.+ ..+ -.++...|..|=.++.-.++.|.+.+
T Consensus 488 ~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 488 NRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred HHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 998875 555 3344555556899999999999887644 321 12234566666555555665554433
No 241
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=75.38 E-value=8.3 Score=23.92 Aligned_cols=27 Identities=30% Similarity=0.245 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 047934 244 FSYNLLIQGLYKCNKLEEAVEYCIEML 270 (344)
Q Consensus 244 ~tyn~LI~ay~k~g~~~~A~~lf~~M~ 270 (344)
.+++.|-..|...|++++|+.++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 456666666666666666666666654
No 242
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.23 E-value=9.7 Score=40.24 Aligned_cols=106 Identities=16% Similarity=0.224 Sum_probs=82.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 047934 179 MLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNK 258 (344)
Q Consensus 179 li~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~ 258 (344)
-+.-+...|.-.+|.++-.+++ .||-..|--=+.++++.+++++.+++=+.++ ...-|.-++.+|.+.|+
T Consensus 690 Tv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n 759 (829)
T KOG2280|consen 690 TVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGN 759 (829)
T ss_pred HHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhccc
Confidence 5677778888888888776654 3688899999999999999999888776654 45678889999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 047934 259 LEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRERGVEKAQSVIAT 303 (344)
Q Consensus 259 ~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~~e~a~~l~~~ 303 (344)
.++|.+.+-+.... . -...+|.+.|++.+|.++--+
T Consensus 760 ~~EA~KYiprv~~l------~---ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 760 KDEAKKYIPRVGGL------Q---EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HHHHhhhhhccCCh------H---HHHHHHHHhccHHHHHHHHHH
Confidence 99999988764321 1 467788888998888766544
No 243
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=74.99 E-value=21 Score=28.23 Aligned_cols=45 Identities=18% Similarity=0.228 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 047934 191 EAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQ 235 (344)
Q Consensus 191 ~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~ 235 (344)
++.+-++.+....+.|+..+..+.+.||-+..++..|.++|+.++
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 334444444444455555555555555555555555555555444
No 244
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=73.97 E-value=1e+02 Score=31.09 Aligned_cols=178 Identities=12% Similarity=0.058 Sum_probs=111.0
Q ss_pred hhhhhcCCCCCCCCCcccccchhcccccCCCCCCCCCHHHHHHHHHHHHHC-CCCCCHH--------HHHHHHHH----c
Q 047934 120 DQFKLAIDKKPGNPQQNESLGQRQEQKPNRNEPISEPPQEADEIFKKMKET-GLIPNAV--------AMLDGLCK----D 186 (344)
Q Consensus 120 ~k~gl~~~~~v~~~l~~~~~~~~~y~~~~~~~~~sg~~~~A~~lf~~M~~~-gi~p~~~--------tli~~~~k----~ 186 (344)
+.+|++.-..+-+-+- .-..+-..-..-.||=+.+++++.+-.+. ++.-... +++..++- .
T Consensus 173 v~~G~G~f~L~lSlLP------p~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~ 246 (468)
T PF10300_consen 173 VYFGFGLFNLVLSLLP------PKVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGED 246 (468)
T ss_pred HHHHHHHHHHHHHhCC------HHHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccC
Confidence 6777777666644443 22222233344478889999988876654 3432222 12333332 4
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHcCCHHHH
Q 047934 187 GLIQEAMKLFGLMREKGTIPEVVIYTAVV-DGFCKAQKFDDAKRIFRKMQSNG---IAPNAFSYNLLIQGLYKCNKLEEA 262 (344)
Q Consensus 187 g~~~~A~~lf~~M~~~g~~pd~~tyn~LI-~ay~k~g~~e~A~~vf~~M~~~g---i~pd~~tyn~LI~ay~k~g~~~~A 262 (344)
...+.|.+++..+.++ -|+...|.-.- +.+...|++++|.+.|+...... -......+--+.-++.-..+|++|
T Consensus 247 ~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A 324 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEA 324 (468)
T ss_pred CCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHH
Confidence 5778899999999876 46766664433 44567799999999999765321 122334455566668888999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHH-HcCCH-------HHHHHHHHHHHH
Q 047934 263 VEYCIEMLEAGHSPNVTTFVGLVDGLC-RERGV-------EKAQSVIATLKE 306 (344)
Q Consensus 263 ~~lf~~M~~~gv~pd~~ty~~lL~a~~-~~G~~-------e~a~~l~~~M~~ 306 (344)
.+.|..+.+.. .-+..+|.-+.-+|. ..|+. ++|.++|.+...
T Consensus 325 ~~~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 325 AEYFLRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 99999998752 123344443333332 46766 888888887643
No 245
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=73.79 E-value=82 Score=29.78 Aligned_cols=95 Identities=14% Similarity=0.102 Sum_probs=62.7
Q ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 047934 175 NAVAMLDGLCKDGLIQEAMKLFGLMREK-GTIPEVVIYTAVVDGFCKA---QKFDDAKRIFRKMQSNGIAPNAFSYNLLI 250 (344)
Q Consensus 175 ~~~tli~~~~k~g~~~~A~~lf~~M~~~-g~~pd~~tyn~LI~ay~k~---g~~e~A~~vf~~M~~~gi~pd~~tyn~LI 250 (344)
.|.-|=..|...|+...|..-|..-.+. |- +...+..+-.++... ....++..+|+++....- -|+.+-..|-
T Consensus 158 gW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~--n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~-~~iral~lLA 234 (287)
T COG4235 158 GWDLLGRAYMALGRASDALLAYRNALRLAGD--NPEILLGLAEALYYQAGQQMTAKARALLRQALALDP-ANIRALSLLA 234 (287)
T ss_pred hHHHHHHHHHHhcchhHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCC-ccHHHHHHHH
Confidence 4777888888888888888888776553 33 333333333333222 235678888888876531 2455666666
Q ss_pred HHHHHcCCHHHHHHHHHHHHHc
Q 047934 251 QGLYKCNKLEEAVEYCIEMLEA 272 (344)
Q Consensus 251 ~ay~k~g~~~~A~~lf~~M~~~ 272 (344)
..+...|++.+|...|+.|.+.
T Consensus 235 ~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 235 FAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHcccHHHHHHHHHHHHhc
Confidence 7777888888888888888775
No 246
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=73.24 E-value=1e+02 Score=31.27 Aligned_cols=137 Identities=15% Similarity=0.174 Sum_probs=89.3
Q ss_pred HcCCHHHHHHHHHHHHHcCCC-C----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH--HHcC
Q 047934 185 KDGLIQEAMKLFGLMREKGTI-P----EVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGL--YKCN 257 (344)
Q Consensus 185 k~g~~~~A~~lf~~M~~~g~~-p----d~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay--~k~g 257 (344)
+.+++.+|.++|...-+.--. | ..+..+.+|+||.-. +++.....+..+.+. .| ...|-.|..++ .+.+
T Consensus 18 kq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~Y~~k 93 (549)
T PF07079_consen 18 KQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQ--FG-KSAYLPLFKALVAYKQK 93 (549)
T ss_pred HHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHh--cC-CchHHHHHHHHHHHHhh
Confidence 567899999999887654211 1 134557788888754 456666666665543 12 22344444443 4678
Q ss_pred CHHHHHHHHHHHHHc--CCC------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCc----ccHHHHHHH
Q 047934 258 KLEEAVEYCIEMLEA--GHS------------PNVTTFVGLVDGLCRERGVEKAQSVIATLKEKGFL----VNDKAVREF 319 (344)
Q Consensus 258 ~~~~A~~lf~~M~~~--gv~------------pd~~ty~~lL~a~~~~G~~e~a~~l~~~M~~~Gi~----p~~~~~~~L 319 (344)
..++|.+.+..-... +-+ +|-.-=+...+++...|.+.+|+.+++.|..+=++ -+..+|+.+
T Consensus 94 ~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~ 173 (549)
T PF07079_consen 94 EYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRA 173 (549)
T ss_pred hHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHH
Confidence 899999888776554 221 22222345667777899999999999998876444 678888887
Q ss_pred HhccCC
Q 047934 320 LDKKAP 325 (344)
Q Consensus 320 l~~yak 325 (344)
+-++++
T Consensus 174 vlmlsr 179 (549)
T PF07079_consen 174 VLMLSR 179 (549)
T ss_pred HHHHhH
Confidence 766654
No 247
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=72.90 E-value=61 Score=27.90 Aligned_cols=56 Identities=21% Similarity=0.341 Sum_probs=32.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 047934 180 LDGLCKDGLIQEAMKLFGLMREKG-TIPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQSN 237 (344)
Q Consensus 180 i~~~~k~g~~~~A~~lf~~M~~~g-~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~ 237 (344)
+..-.+.++.+++..++..|.-.. -.+...++..+|. ...|++++|.++|+.+.+.
T Consensus 17 ~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~--i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 17 LSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLH--IVRGDWDDALRLLRELEER 73 (160)
T ss_pred HHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHH--HHhCCHHHHHHHHHHHhcc
Confidence 344445567777777777665432 1123445555544 4667777777777776554
No 248
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=72.73 E-value=13 Score=25.00 Aligned_cols=37 Identities=19% Similarity=0.325 Sum_probs=24.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCcccHHHHHHHHhc
Q 047934 286 DGLCRERGVEKAQSVIATLKEKGFLVNDKAVREFLDK 322 (344)
Q Consensus 286 ~a~~~~G~~e~a~~l~~~M~~~Gi~p~~~~~~~Ll~~ 322 (344)
....+.|.+.++..+++.|.+.|+..+...+..++..
T Consensus 10 ~~Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~ 46 (48)
T PF11848_consen 10 LLAKRRGLISEVKPLLDRLQQAGFRISPKLIEEILRR 46 (48)
T ss_pred HHHHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHHH
Confidence 3344566666777777777777777777666666643
No 249
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=72.21 E-value=9.7 Score=23.57 Aligned_cols=26 Identities=4% Similarity=0.128 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 047934 210 IYTAVVDGFCKAQKFDDAKRIFRKMQ 235 (344)
Q Consensus 210 tyn~LI~ay~k~g~~e~A~~vf~~M~ 235 (344)
+|+.|=..|.+.|++++|..+|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46677788888888888888888743
No 250
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=71.69 E-value=92 Score=29.45 Aligned_cols=101 Identities=13% Similarity=0.050 Sum_probs=76.3
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHcCCCCCHHHH
Q 047934 205 IPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKC---NKLEEAVEYCIEMLEAGHSPNVTTF 281 (344)
Q Consensus 205 ~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~---g~~~~A~~lf~~M~~~gv~pd~~ty 281 (344)
+-|...|--|=..|...|+++.|..-|..-.+.- ..+...+..+-.++... ..-.++..+|+++.... .-|..+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHH
Confidence 4478899999999999999999999999887641 23455555555555443 23457899999988763 2245556
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHC
Q 047934 282 VGLVDGLCRERGVEKAQSVIATLKEK 307 (344)
Q Consensus 282 ~~lL~a~~~~G~~e~a~~l~~~M~~~ 307 (344)
..|-..+...|++.+|...|+.|.+.
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 66777788999999999999999986
No 251
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=71.33 E-value=1.2e+02 Score=30.65 Aligned_cols=131 Identities=16% Similarity=0.149 Sum_probs=90.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc-CCCCC-----HHHHHHHHHHHHHc----CCHHHHHHHHHHHHHCCCCCCHHHHH
Q 047934 178 AMLDGLCKDGLIQEAMKLFGLMREK-GTIPE-----VVIYTAVVDGFCKA----QKFDDAKRIFRKMQSNGIAPNAFSYN 247 (344)
Q Consensus 178 tli~~~~k~g~~~~A~~lf~~M~~~-g~~pd-----~~tyn~LI~ay~k~----g~~e~A~~vf~~M~~~gi~pd~~tyn 247 (344)
.++....-.|+-+.+++++.+-.+. ++... .-+|..++..++.. ...+.|.++++.+.++ -|+...|.
T Consensus 193 kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lfl 270 (468)
T PF10300_consen 193 KLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALFL 270 (468)
T ss_pred HHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHHH
Confidence 4677777788999999988876554 33322 24566666666654 4678999999999886 57777776
Q ss_pred HHHHH-HHHcCCHHHHHHHHHHHHHcC--C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCc
Q 047934 248 LLIQG-LYKCNKLEEAVEYCIEMLEAG--H-SPNVTTFVGLVDGLCRERGVEKAQSVIATLKEK-GFL 310 (344)
Q Consensus 248 ~LI~a-y~k~g~~~~A~~lf~~M~~~g--v-~pd~~ty~~lL~a~~~~G~~e~a~~l~~~M~~~-Gi~ 310 (344)
..-.- +...|++++|++.|++..... . +.....+--+.-.+.-..++++|.+.|..+.+. .+.
T Consensus 271 ~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WS 338 (468)
T PF10300_consen 271 FFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWS 338 (468)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccH
Confidence 54433 445899999999999765321 1 222333444555577789999999999999976 443
No 252
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=71.32 E-value=16 Score=29.12 Aligned_cols=38 Identities=21% Similarity=0.260 Sum_probs=16.0
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 047934 198 LMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQ 235 (344)
Q Consensus 198 ~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~ 235 (344)
.+....+.|+..+..+.|.+|-+..++..|.++|+.++
T Consensus 35 ~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK 72 (108)
T PF02284_consen 35 NLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIK 72 (108)
T ss_dssp HHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33333444444444444455544444544555444443
No 253
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=70.93 E-value=12 Score=23.15 Aligned_cols=29 Identities=3% Similarity=0.261 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 047934 208 VVIYTAVVDGFCKAQKFDDAKRIFRKMQS 236 (344)
Q Consensus 208 ~~tyn~LI~ay~k~g~~e~A~~vf~~M~~ 236 (344)
..+++.|-.+|...|++++|+.++++..+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 45788888999999999999999988754
No 254
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=70.38 E-value=20 Score=23.15 Aligned_cols=26 Identities=15% Similarity=0.144 Sum_probs=12.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 047934 246 YNLLIQGLYKCNKLEEAVEYCIEMLE 271 (344)
Q Consensus 246 yn~LI~ay~k~g~~~~A~~lf~~M~~ 271 (344)
|..+-.+|...|++++|.++|++..+
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33444444444444444444444444
No 255
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=69.74 E-value=1.2e+02 Score=30.12 Aligned_cols=167 Identities=14% Similarity=0.121 Sum_probs=88.3
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHH-----HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 047934 154 SEPPQEADEIFKKMKETGLIPNAV-----AMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAK 228 (344)
Q Consensus 154 sg~~~~A~~lf~~M~~~gi~p~~~-----tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~ 228 (344)
.|+.++|.+-|+.|..- |... .|...--+.|.-+.|.++-+..-.. -+-=...+.++|...|..|+++.|+
T Consensus 133 eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~-Ap~l~WA~~AtLe~r~~~gdWd~Al 208 (531)
T COG3898 133 EGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEK-APQLPWAARATLEARCAAGDWDGAL 208 (531)
T ss_pred cCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhh-ccCCchHHHHHHHHHHhcCChHHHH
Confidence 46677777777776642 2111 2333334456666666655544332 1123466677888888888888888
Q ss_pred HHHHHHHHC-CCCCCHHH--HHHHHHHHHHc---CCHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHHcCCHHHHHHHH
Q 047934 229 RIFRKMQSN-GIAPNAFS--YNLLIQGLYKC---NKLEEAVEYCIEMLEAGHSPNVTT-FVGLVDGLCRERGVEKAQSVI 301 (344)
Q Consensus 229 ~vf~~M~~~-gi~pd~~t--yn~LI~ay~k~---g~~~~A~~lf~~M~~~gv~pd~~t-y~~lL~a~~~~G~~e~a~~l~ 301 (344)
++.+.-+.. -+++|+.- =..|+.+-+.. -+...|.+.-. ....+.||.+- -..--.++.+.|++.++-.++
T Consensus 209 kLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~--~a~KL~pdlvPaav~AAralf~d~~~rKg~~il 286 (531)
T COG3898 209 KLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDAL--EANKLAPDLVPAAVVAARALFRDGNLRKGSKIL 286 (531)
T ss_pred HHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHH--HHhhcCCccchHHHHHHHHHHhccchhhhhhHH
Confidence 887765543 23444332 22333332211 12222322221 22344555433 233456677888888888888
Q ss_pred HHHHHCCCcccHHHHHHHHhccCCCChHH
Q 047934 302 ATLKEKGFLVNDKAVREFLDKKAPFSSSV 330 (344)
Q Consensus 302 ~~M~~~Gi~p~~~~~~~Ll~~yak~g~~~ 330 (344)
+.+-+.-=.|+. +. +-.+++.|+..
T Consensus 287 E~aWK~ePHP~i--a~--lY~~ar~gdta 311 (531)
T COG3898 287 ETAWKAEPHPDI--AL--LYVRARSGDTA 311 (531)
T ss_pred HHHHhcCCChHH--HH--HHHHhcCCCcH
Confidence 888776444443 33 33344555543
No 256
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=69.61 E-value=48 Score=29.68 Aligned_cols=78 Identities=15% Similarity=0.146 Sum_probs=55.6
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHHcCCHH
Q 047934 219 CKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEA---GHSPNVTTFVGLVDGLCRERGVE 295 (344)
Q Consensus 219 ~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~---gv~pd~~ty~~lL~a~~~~G~~e 295 (344)
.+.|+ ++|++.|-.+...+.--++... .-+..|.-..+.++|..++....+. +-.+|...+.+|.+.+.+.|+.+
T Consensus 118 sr~~d-~~A~~~fL~~E~~~~l~t~elq-~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 118 SRFGD-QEALRRFLQLEGTPELETAELQ-YALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE 195 (203)
T ss_pred hccCc-HHHHHHHHHHcCCCCCCCHHHH-HHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence 44454 6788888888777655444444 4444555578888888888887763 34788888999999999988888
Q ss_pred HHH
Q 047934 296 KAQ 298 (344)
Q Consensus 296 ~a~ 298 (344)
.|.
T Consensus 196 ~AY 198 (203)
T PF11207_consen 196 QAY 198 (203)
T ss_pred hhh
Confidence 774
No 257
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=69.61 E-value=1.2e+02 Score=29.79 Aligned_cols=150 Identities=12% Similarity=0.049 Sum_probs=75.9
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCHHH--H--HHHHHHcCCHHHHHHHHHHHHHcCC----CCCH----------HHHHHH
Q 047934 153 ISEPPQEADEIFKKMKETGLIPNAVA--M--LDGLCKDGLIQEAMKLFGLMREKGT----IPEV----------VIYTAV 214 (344)
Q Consensus 153 ~sg~~~~A~~lf~~M~~~gi~p~~~t--l--i~~~~k~g~~~~A~~lf~~M~~~g~----~pd~----------~tyn~L 214 (344)
+.|+-.-|+.=+....+ ++||..+ + -..+.+.|.+++|..-|+...+..- ..+. ...-..
T Consensus 84 AmGksk~al~Dl~rVle--lKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~q 161 (504)
T KOG0624|consen 84 AMGKSKAALQDLSRVLE--LKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQ 161 (504)
T ss_pred hhcCCccchhhHHHHHh--cCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHH
Confidence 34444444444444332 3455442 1 2234466666666666666654421 0000 111223
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 047934 215 VDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRERGV 294 (344)
Q Consensus 215 I~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~~ 294 (344)
+..+.-.|+...|......+.+- ...|+..|..--.+|...|.+..|+.=+....+.. .-+..++--+-..+...|+.
T Consensus 162 l~s~~~~GD~~~ai~~i~~llEi-~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~ 239 (504)
T KOG0624|consen 162 LKSASGSGDCQNAIEMITHLLEI-QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDA 239 (504)
T ss_pred HHHHhcCCchhhHHHHHHHHHhc-CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhH
Confidence 33344556677777777766654 23466667777777777777776655443333221 11333333444455566666
Q ss_pred HHHHHHHHHHHH
Q 047934 295 EKAQSVIATLKE 306 (344)
Q Consensus 295 e~a~~l~~~M~~ 306 (344)
+.+...+.+-.+
T Consensus 240 ~~sL~~iRECLK 251 (504)
T KOG0624|consen 240 ENSLKEIRECLK 251 (504)
T ss_pred HHHHHHHHHHHc
Confidence 666666555544
No 258
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=69.37 E-value=81 Score=27.89 Aligned_cols=118 Identities=15% Similarity=0.236 Sum_probs=62.4
Q ss_pred CCHHHHHHHHHHHHHCCCC--CCHH--HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHH--HHHcCCHHHH
Q 047934 155 EPPQEADEIFKKMKETGLI--PNAV--AMLDGLCKDGLIQEAMKLFGLMREKGTIPEVV-IYTAVVDG--FCKAQKFDDA 227 (344)
Q Consensus 155 g~~~~A~~lf~~M~~~gi~--p~~~--tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~-tyn~LI~a--y~k~g~~e~A 227 (344)
++.++|+.-|.++...|.. |... -+-...+..|+-..|...|.+.-..--.|-.. -..-|=.+ +..+|.++++
T Consensus 72 ~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV 151 (221)
T COG4649 72 NKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDV 151 (221)
T ss_pred CCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHH
Confidence 4566777777777776654 2111 12334456677777777777766544333322 11112222 2355666666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 047934 228 KRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEA 272 (344)
Q Consensus 228 ~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~ 272 (344)
....+-+...+-..-...=-+|--+-.+.|++.+|...|..+...
T Consensus 152 ~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 152 SSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 666555544332222222234444555667777777777766554
No 259
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=69.04 E-value=57 Score=27.52 Aligned_cols=68 Identities=19% Similarity=0.122 Sum_probs=49.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 047934 207 EVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHS 275 (344)
Q Consensus 207 d~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~ 275 (344)
+..-++..++...+.|+-+...++...+.+ .-+++....--+-.||.+.|...++.+++.+.-+.|++
T Consensus 85 ~se~vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 85 LSEYVDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp --HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 445567778888899999999999999875 33678888888999999999999999999998888753
No 260
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=68.67 E-value=12 Score=24.20 Aligned_cols=27 Identities=11% Similarity=0.154 Sum_probs=20.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 047934 281 FVGLVDGLCRERGVEKAQSVIATLKEK 307 (344)
Q Consensus 281 y~~lL~a~~~~G~~e~a~~l~~~M~~~ 307 (344)
+..+-.+|...|++++|.++++...+.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 455667778888888888888887765
No 261
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=68.38 E-value=93 Score=33.03 Aligned_cols=92 Identities=12% Similarity=0.257 Sum_probs=65.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHcCCHH------HHHHHHHHHHHCCCCCCHHHHH
Q 047934 176 AVAMLDGLCKDGLIQEAMKLFGLMREK--GTIPEVVIYTAVVDGFCKAQKFD------DAKRIFRKMQSNGIAPNAFSYN 247 (344)
Q Consensus 176 ~~tli~~~~k~g~~~~A~~lf~~M~~~--g~~pd~~tyn~LI~ay~k~g~~e------~A~~vf~~M~~~gi~pd~~tyn 247 (344)
..+|+.+|..+|++..+.++++.+... |-+-=...||..|+.+.+.|.++ .|.++++.-. +.-|..||.
T Consensus 31 ~~sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~a 107 (1117)
T COG5108 31 TASLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYA 107 (1117)
T ss_pred hHHHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHH
Confidence 448999999999999999999988754 44445677889999999999764 3445555444 444889999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Q 047934 248 LLIQGLYKCNKLEEAVEYCIEML 270 (344)
Q Consensus 248 ~LI~ay~k~g~~~~A~~lf~~M~ 270 (344)
.|+.+-..--+-....-++.+..
T Consensus 108 ll~~~sln~t~~~l~~pvl~~~i 130 (1117)
T COG5108 108 LLCQASLNPTQRQLGLPVLHELI 130 (1117)
T ss_pred HHHHhhcChHhHHhccHHHHHHH
Confidence 98887655434334444444443
No 262
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=68.34 E-value=1.1e+02 Score=34.09 Aligned_cols=145 Identities=12% Similarity=0.101 Sum_probs=76.9
Q ss_pred CHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH---
Q 047934 156 PPQEADEIFKKMKETG--LIPNAVAMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRI--- 230 (344)
Q Consensus 156 ~~~~A~~lf~~M~~~g--i~p~~~tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~v--- 230 (344)
+.+.|+..|-+-...+ ..|-+.+|=..|+..-+...|.+.|....+-. ..|...+.++.+-|++...++.|..+
T Consensus 473 ~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 473 NSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred hHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 3555555554444433 23333444444444445555555555444332 12445555555666666666655555
Q ss_pred ---------------------------------HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 047934 231 ---------------------------------FRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPN 277 (344)
Q Consensus 231 ---------------------------------f~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd 277 (344)
|+.-.+.. .-|...|..+-.+|..+|....|.++|.+.... .|+
T Consensus 552 ~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~ 628 (1238)
T KOG1127|consen 552 AAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPL 628 (1238)
T ss_pred HhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcH
Confidence 33322221 225667888888888888888888888776543 232
Q ss_pred HHHHHHHHHH--HHHcCCHHHHHHHHHHHH
Q 047934 278 VTTFVGLVDG--LCRERGVEKAQSVIATLK 305 (344)
Q Consensus 278 ~~ty~~lL~a--~~~~G~~e~a~~l~~~M~ 305 (344)
.+|.-.-.+ -+..|...++...++...
T Consensus 629 -s~y~~fk~A~~ecd~GkYkeald~l~~ii 657 (1238)
T KOG1127|consen 629 -SKYGRFKEAVMECDNGKYKEALDALGLII 657 (1238)
T ss_pred -hHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 222221111 234566666666665544
No 263
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=68.29 E-value=52 Score=29.47 Aligned_cols=83 Identities=13% Similarity=0.061 Sum_probs=62.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHH
Q 047934 179 MLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQSN---GIAPNAFSYNLLIQGLYK 255 (344)
Q Consensus 179 li~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~---gi~pd~~tyn~LI~ay~k 255 (344)
+.--..+.|+ ++|++.|-.+...+..-++...-+|-..|. ..+.+++.+++-...+. +-.+|...+.+|.+.|.+
T Consensus 113 lYy~Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~ 190 (203)
T PF11207_consen 113 LYYHWSRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQK 190 (203)
T ss_pred HHHHhhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Confidence 3344444444 678888988888876667666666666666 56789999998887664 347889999999999999
Q ss_pred cCCHHHHH
Q 047934 256 CNKLEEAV 263 (344)
Q Consensus 256 ~g~~~~A~ 263 (344)
.++.+.|-
T Consensus 191 ~~~~e~AY 198 (203)
T PF11207_consen 191 LKNYEQAY 198 (203)
T ss_pred hcchhhhh
Confidence 99998874
No 264
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=68.24 E-value=5.4 Score=33.31 Aligned_cols=30 Identities=30% Similarity=0.368 Sum_probs=24.8
Q ss_pred CCCHHHHHHHHHHHHHCCCCC-CHHHHHHHH
Q 047934 154 SEPPQEADEIFKKMKETGLIP-NAVAMLDGL 183 (344)
Q Consensus 154 sg~~~~A~~lf~~M~~~gi~p-~~~tli~~~ 183 (344)
.|.-.+|.+||..|.++|-.| +|..|+..+
T Consensus 108 ygsk~DaY~VF~kML~~G~pPddW~~Ll~~a 138 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLERGNPPDDWDALLKEA 138 (140)
T ss_pred hccCCcHHHHHHHHHhCCCCCccHHHHHHHh
Confidence 456678999999999999988 588888764
No 265
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=67.80 E-value=82 Score=27.30 Aligned_cols=103 Identities=8% Similarity=0.134 Sum_probs=71.7
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHH
Q 047934 192 AMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCN--KLEEAVEYCIEM 269 (344)
Q Consensus 192 A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g--~~~~A~~lf~~M 269 (344)
..++..-+.+.++.|+...|..+|+.+.+.|.+....++ ...++-+|.......+-.+.... -...|++++.++
T Consensus 13 llEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~ql----lq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL 88 (167)
T PF07035_consen 13 LLEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQL----LQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRL 88 (167)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH----HhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHh
Confidence 345566667789999999999999999999997665544 45566667766665554443321 234455555555
Q ss_pred HHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 047934 270 LEAGHSPNVTTFVGLVDGLCRERGVEKAQSVIATLKE 306 (344)
Q Consensus 270 ~~~gv~pd~~ty~~lL~a~~~~G~~e~a~~l~~~M~~ 306 (344)
.. .+..+++.+...|++-+|.++.....+
T Consensus 89 ~~--------~~~~iievLL~~g~vl~ALr~ar~~~~ 117 (167)
T PF07035_consen 89 GT--------AYEEIIEVLLSKGQVLEALRYARQYHK 117 (167)
T ss_pred hh--------hHHHHHHHHHhCCCHHHHHHHHHHcCC
Confidence 42 356677888889999999998877533
No 266
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=66.86 E-value=64 Score=34.46 Aligned_cols=105 Identities=12% Similarity=0.073 Sum_probs=75.7
Q ss_pred HcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH
Q 047934 201 EKGTIPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTT 280 (344)
Q Consensus 201 ~~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~t 280 (344)
...+.-|...|..|--+...+|.++.+-+.|++....- --....|+.+-..|..+|.-..|..+.+.-....-.|+..+
T Consensus 316 ~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s 394 (799)
T KOG4162|consen 316 LKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDIS 394 (799)
T ss_pred HhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcch
Confidence 33466688999999999999999999999999876532 22556899999999999999999999887655433454444
Q ss_pred HHHHHH-HHH-HcCCHHHHHHHHHHHHH
Q 047934 281 FVGLVD-GLC-RERGVEKAQSVIATLKE 306 (344)
Q Consensus 281 y~~lL~-a~~-~~G~~e~a~~l~~~M~~ 306 (344)
-..++. -|. +.+.++++..+.....+
T Consensus 395 ~~Lmasklc~e~l~~~eegldYA~kai~ 422 (799)
T KOG4162|consen 395 VLLMASKLCIERLKLVEEGLDYAQKAIS 422 (799)
T ss_pred HHHHHHHHHHhchhhhhhHHHHHHHHHH
Confidence 333333 333 46777777777666665
No 267
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=66.45 E-value=1.5e+02 Score=29.80 Aligned_cols=152 Identities=15% Similarity=0.087 Sum_probs=90.8
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCCHHHHH--HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 047934 152 PISEPPQEADEIFKKMKETGLIPNAVAML--DGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKR 229 (344)
Q Consensus 152 ~~sg~~~~A~~lf~~M~~~gi~p~~~tli--~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~ 229 (344)
|...+++.|+.+-+.....+-..-..-++ ..+...++.++|.--|...+.. -+.+...|--|+..|...|++.+|.-
T Consensus 311 ~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L-ap~rL~~Y~GL~hsYLA~~~~kEA~~ 389 (564)
T KOG1174|consen 311 YDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQML-APYRLEIYRGLFHSYLAQKRFKEANA 389 (564)
T ss_pred hhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhc-chhhHHHHHHHHHHHHhhchHHHHHH
Confidence 33567788888777766543221111222 3455678888888888776543 22477888888888888888877654
Q ss_pred HH----HHHHHC------------------------------CCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 047934 230 IF----RKMQSN------------------------------GIAPNA-FSYNLLIQGLYKCNKLEEAVEYCIEMLEAGH 274 (344)
Q Consensus 230 vf----~~M~~~------------------------------gi~pd~-~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv 274 (344)
+- +.|... .+.|+- ..-+.+-.-|...|..+++..+++.-...
T Consensus 390 ~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~-- 467 (564)
T KOG1174|consen 390 LANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII-- 467 (564)
T ss_pred HHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhh--
Confidence 43 323211 112221 12344445555666777777776665442
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 047934 275 SPNVTTFVGLVDGLCRERGVEKAQSVIATLKE 306 (344)
Q Consensus 275 ~pd~~ty~~lL~a~~~~G~~e~a~~l~~~M~~ 306 (344)
.||...-+.|-+.++..+.+.+|.+.|....+
T Consensus 468 ~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr 499 (564)
T KOG1174|consen 468 FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR 499 (564)
T ss_pred ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 56777767777777777777777666665543
No 268
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=66.41 E-value=73 Score=31.32 Aligned_cols=128 Identities=13% Similarity=0.071 Sum_probs=76.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 047934 212 TAVVDGFCKAQKFDDAKRIFRKMQSNG---IAPNAFSYNLLIQGLYK---CNKLEEAVEYCIEMLEAGHSPNVTTFVGLV 285 (344)
Q Consensus 212 n~LI~ay~k~g~~e~A~~vf~~M~~~g---i~pd~~tyn~LI~ay~k---~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL 285 (344)
-.|+-.|-...+++...++.+.|...- +.-....--...-|+.+ .|+.++|++++..+......++..||..+-
T Consensus 145 ~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~G 224 (374)
T PF13281_consen 145 INLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLG 224 (374)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 355556889999999999999998752 11111111233344456 789999999999977777778888888877
Q ss_pred HHHHHc---------CCHHHHHHHHHHHHHCCCccc---HHHHHHHHhccCCCChH---------HHHHHhcCccCC
Q 047934 286 DGLCRE---------RGVEKAQSVIATLKEKGFLVN---DKAVREFLDKKAPFSSS---------VWEAIFGKKTLQ 341 (344)
Q Consensus 286 ~a~~~~---------G~~e~a~~l~~~M~~~Gi~p~---~~~~~~Ll~~yak~g~~---------~W~all~~~~~~ 341 (344)
..|-.. ..+++|.+.+.+--+. .++ ..-+..|+...+..... .++.++|++...
T Consensus 225 RIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~ 299 (374)
T PF13281_consen 225 RIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSL 299 (374)
T ss_pred HHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccc
Confidence 766431 1345555555543322 233 23334445444432211 266777776543
No 269
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=65.90 E-value=1.2e+02 Score=28.73 Aligned_cols=136 Identities=15% Similarity=0.125 Sum_probs=88.5
Q ss_pred CCCCHHHHHHHHHHHHHCCCCC-CH-HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 047934 153 ISEPPQEADEIFKKMKETGLIP-NA-VAMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRI 230 (344)
Q Consensus 153 ~sg~~~~A~~lf~~M~~~gi~p-~~-~tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~v 230 (344)
..|++.+|..+|+......-.- +. ..|..+|...|+.+.|..++..+...--........+-|..+.......+...+
T Consensus 146 ~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~~l 225 (304)
T COG3118 146 EAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQDL 225 (304)
T ss_pred hccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 4788999999999877643221 12 258999999999999999999886543222333333445555555555555555
Q ss_pred HHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHcC
Q 047934 231 FRKMQSNGIAP-NAFSYNLLIQGLYKCNKLEEAVEYCIEMLEA--GHSPNVTTFVGLVDGLCRER 292 (344)
Q Consensus 231 f~~M~~~gi~p-d~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~--gv~pd~~ty~~lL~a~~~~G 292 (344)
-.+.-. .| |...=-.+-..|...|+.++|++.+-.+... |.. |...=..||..+.-.|
T Consensus 226 ~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g 286 (304)
T COG3118 226 QRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFG 286 (304)
T ss_pred HHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcC
Confidence 555444 34 5556667888889999999999888777654 333 3333445555555555
No 270
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=65.49 E-value=35 Score=30.15 Aligned_cols=65 Identities=11% Similarity=0.168 Sum_probs=42.8
Q ss_pred CHHHHHHHHHHHHHCCCCCCHH----------HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 047934 156 PPQEADEIFKKMKETGLIPNAV----------AMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQK 223 (344)
Q Consensus 156 ~~~~A~~lf~~M~~~gi~p~~~----------tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~ 223 (344)
.++.|+.+|+.+.+.--.|..- ..+..|.+.|.+++|.++++..... |+....-.-+.+..+.++
T Consensus 84 PLESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~d---~~~~~~r~kL~~II~~Kd 158 (200)
T cd00280 84 PLESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFSD---PESQKLRMKLLMIIREKD 158 (200)
T ss_pred hHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---CCchhHHHHHHHHHHccc
Confidence 4789999999988765554211 3567788888888888888877663 454444444444444443
No 271
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=65.13 E-value=1.6e+02 Score=29.63 Aligned_cols=49 Identities=18% Similarity=0.209 Sum_probs=25.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHH----HHHHcCCHHHHHHHHHHHH
Q 047934 150 NEPISEPPQEADEIFKKMKETGLIPNAVAMLD----GLCKDGLIQEAMKLFGLMR 200 (344)
Q Consensus 150 ~~~~sg~~~~A~~lf~~M~~~gi~p~~~tli~----~~~k~g~~~~A~~lf~~M~ 200 (344)
.++..|+.++|+..|+.....+ |...+-|+ .+.+.|+.+....+...+.
T Consensus 241 ~~~~~Gdn~~a~~~Fe~~~~~d--py~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf 293 (564)
T KOG1174|consen 241 CLYYNGDYFQAEDIFSSTLCAN--PDNVEAMDLYAVLLGQEGGCEQDSALMDYLF 293 (564)
T ss_pred hhhhhcCchHHHHHHHHHhhCC--hhhhhhHHHHHHHHHhccCHhhHHHHHHHHH
Confidence 4555777778877777765443 22222122 2234556655555554443
No 272
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=63.98 E-value=89 Score=26.37 Aligned_cols=90 Identities=13% Similarity=0.023 Sum_probs=47.6
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHHH---HHHHHHHcC
Q 047934 182 GLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQSN-GIAPNAFSYNL---LIQGLYKCN 257 (344)
Q Consensus 182 ~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~-gi~pd~~tyn~---LI~ay~k~g 257 (344)
+++..|+.+.|++.|.+.... .+-....||.--.++--.|+.++|++=+++..+. |-+ ......+ --.-|-..|
T Consensus 52 alaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHhC
Confidence 445666777777776655443 2235566666666666666666666666655543 211 1111111 112233455
Q ss_pred CHHHHHHHHHHHHHcC
Q 047934 258 KLEEAVEYCIEMLEAG 273 (344)
Q Consensus 258 ~~~~A~~lf~~M~~~g 273 (344)
+.+.|..=|+.-.+.|
T Consensus 130 ~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLG 145 (175)
T ss_pred chHHHHHhHHHHHHhC
Confidence 5666666666555554
No 273
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.45 E-value=36 Score=35.45 Aligned_cols=82 Identities=11% Similarity=0.012 Sum_probs=46.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 047934 207 EVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVD 286 (344)
Q Consensus 207 d~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~ 286 (344)
+..-|..|=++..+.+++..|.+.|..-. -|..|+-.|...|+.+....+-...++.|. .|...-
T Consensus 665 s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~---------d~~~LlLl~t~~g~~~~l~~la~~~~~~g~------~N~AF~ 729 (794)
T KOG0276|consen 665 SEVKWRQLGDAALSAGELPLASECFLRAR---------DLGSLLLLYTSSGNAEGLAVLASLAKKQGK------NNLAFL 729 (794)
T ss_pred chHHHHHHHHHHhhcccchhHHHHHHhhc---------chhhhhhhhhhcCChhHHHHHHHHHHhhcc------cchHHH
Confidence 34455666666666666666666665443 244555555555655544444444444442 233444
Q ss_pred HHHHcCCHHHHHHHHHH
Q 047934 287 GLCRERGVEKAQSVIAT 303 (344)
Q Consensus 287 a~~~~G~~e~a~~l~~~ 303 (344)
+|-..|+++++.+++.+
T Consensus 730 ~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 730 AYFLSGDYEECLELLIS 746 (794)
T ss_pred HHHHcCCHHHHHHHHHh
Confidence 55667888888777654
No 274
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=62.38 E-value=30 Score=36.38 Aligned_cols=119 Identities=18% Similarity=0.141 Sum_probs=76.1
Q ss_pred HHHHHHcCCHHHHHHHHH-----HH-HHcCCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 047934 180 LDGLCKDGLIQEAMKLFG-----LM-REKGTI---PEVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLI 250 (344)
Q Consensus 180 i~~~~k~g~~~~A~~lf~-----~M-~~~g~~---pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI 250 (344)
...+..+|+.++|..+.. +| .+-+-+ .+..+.-.+-.-+-+...+..|-++|..|-. .-.++
T Consensus 710 AEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD---------~ksiV 780 (1081)
T KOG1538|consen 710 AEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGD---------LKSLV 780 (1081)
T ss_pred HHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhcc---------HHHHh
Confidence 344455666666655432 11 111212 2334444444444455667888899988863 24678
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCH-----------HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 047934 251 QGLYKCNKLEEAVEYCIEMLEAGHSPNV-----------TTFVGLVDGLCRERGVEKAQSVIATLKEKGF 309 (344)
Q Consensus 251 ~ay~k~g~~~~A~~lf~~M~~~gv~pd~-----------~ty~~lL~a~~~~G~~e~a~~l~~~M~~~Gi 309 (344)
+.+...++|++|..+-+...+. .||+ .-|.-.=.||-++|+..+|.++++.+-...+
T Consensus 781 qlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnnav 848 (1081)
T KOG1538|consen 781 QLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTNNAV 848 (1081)
T ss_pred hheeecccchHhHhhhhhCccc--cccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhhhhh
Confidence 8899999999999887765442 2222 3366677889999999999999998876533
No 275
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.99 E-value=1.3e+02 Score=29.50 Aligned_cols=150 Identities=11% Similarity=0.004 Sum_probs=79.1
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHcCCHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHHcCCHHHH
Q 047934 154 SEPPQEADEIFKKMKETGLIPNAVA---MLDGLCKDGLIQEAMKLFGLMREK---GTIPEVVIYTAVVDGFCKAQKFDDA 227 (344)
Q Consensus 154 sg~~~~A~~lf~~M~~~gi~p~~~t---li~~~~k~g~~~~A~~lf~~M~~~---g~~pd~~tyn~LI~ay~k~g~~e~A 227 (344)
.|...+|...|+++.+. .+-|..+ .=++|.-.|+.+.....++..... +++..+++-..+--++..+|-+++|
T Consensus 116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 56666666666666652 1212222 345666677777766666665533 2222223333333344567778888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 047934 228 KRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEA---GHSPNVTTFVGLVDGLCRERGVEKAQSVIATL 304 (344)
Q Consensus 228 ~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~---gv~pd~~ty~~lL~a~~~~G~~e~a~~l~~~M 304 (344)
++.-++-.+-+ +-|...-.++-..+--.++.+++.++..+-... +.-.-...|-..--.+...+.++.|.++|+.=
T Consensus 195 Ek~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~e 273 (491)
T KOG2610|consen 195 EKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDRE 273 (491)
T ss_pred HHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHHH
Confidence 77766654432 223333344444445567777777766654321 11111122222333344557888999999854
Q ss_pred H
Q 047934 305 K 305 (344)
Q Consensus 305 ~ 305 (344)
.
T Consensus 274 i 274 (491)
T KOG2610|consen 274 I 274 (491)
T ss_pred H
Confidence 3
No 276
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.82 E-value=1.6e+02 Score=28.72 Aligned_cols=118 Identities=11% Similarity=0.067 Sum_probs=85.2
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH----HHHHcCCHH
Q 047934 185 KDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQ----GLYKCNKLE 260 (344)
Q Consensus 185 k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~----ay~k~g~~~ 260 (344)
-.|...+|-..++.+.+. ++.|...++-.=++|...|+.+.-+..++++.-. -.+|...|+.+=. ++..+|-++
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 467888888888888764 6778889999999999999999888888888654 1335444443333 344789999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 047934 261 EAVEYCIEMLEAGHSPNVTTFVGLVDGLCRERGVEKAQSVIATLK 305 (344)
Q Consensus 261 ~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~~e~a~~l~~~M~ 305 (344)
+|.+.-++-.+-+ +-|.-.-.++-..+-..|+..++.+.+.+-.
T Consensus 193 dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~te 236 (491)
T KOG2610|consen 193 DAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTE 236 (491)
T ss_pred hHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcc
Confidence 9998877655432 3355566666666777888888888876543
No 277
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=61.67 E-value=31 Score=23.16 Aligned_cols=37 Identities=19% Similarity=0.206 Sum_probs=22.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 047934 180 LDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVD 216 (344)
Q Consensus 180 i~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ 216 (344)
+....+.|...++..+++.|.+.|+..+...|..++.
T Consensus 9 L~~Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 9 LLLAKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHHHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 3444455556666666666666666666666665554
No 278
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=61.61 E-value=2e+02 Score=29.69 Aligned_cols=163 Identities=20% Similarity=0.161 Sum_probs=90.8
Q ss_pred CCCHHHHHHHHHHHHH-------CCCCCCHHHHHHHHHHcC-----CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-
Q 047934 154 SEPPQEADEIFKKMKE-------TGLIPNAVAMLDGLCKDG-----LIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCK- 220 (344)
Q Consensus 154 sg~~~~A~~lf~~M~~-------~gi~p~~~tli~~~~k~g-----~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k- 220 (344)
..+++.|...|..+.+ ++..+...-+-..|.+.. +.+.|+.+|..-.+.|. |+...+-..+.....
T Consensus 262 ~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~ 340 (552)
T KOG1550|consen 262 TQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGN-PDAQYLLGVLYETGTK 340 (552)
T ss_pred cccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCc
Confidence 4588889998888877 564443334444444432 56778888887777765 455554444444444
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 047934 221 AQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLY--KCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRERGVEKAQ 298 (344)
Q Consensus 221 ~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~--k~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~~e~a~ 298 (344)
..+...|.++|...-..|.. +..-+-+++--.. -..+...|..++.+..+.|....... ...+..+.. +..+.+.
T Consensus 341 ~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g~~~A~~~-~~~~~~~g~-~~~~~~~ 417 (552)
T KOG1550|consen 341 ERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELGLGVERNLELAFAYYKKAAEKGNPSAAYL-LGAFYEYGV-GRYDTAL 417 (552)
T ss_pred cccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHccChhhHHH-HHHHHHHcc-ccccHHH
Confidence 35677888888887777632 2222222221111 22456778888877777772222222 223333333 6666666
Q ss_pred HHHHHHHHCCCcccHHHHHHHH
Q 047934 299 SVIATLKEKGFLVNDKAVREFL 320 (344)
Q Consensus 299 ~l~~~M~~~Gi~p~~~~~~~Ll 320 (344)
-....+...|.+.....-..++
T Consensus 418 ~~~~~~a~~g~~~~q~~a~~l~ 439 (552)
T KOG1550|consen 418 ALYLYLAELGYEVAQSNAAYLL 439 (552)
T ss_pred HHHHHHHHhhhhHHhhHHHHHH
Confidence 6666666665554433333333
No 279
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=61.20 E-value=77 Score=35.08 Aligned_cols=116 Identities=15% Similarity=0.139 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 047934 189 IQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIE 268 (344)
Q Consensus 189 ~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~ 268 (344)
...|+..|-.-.+... -=...|..|=..|+..-++..|.+.|+...+..- -|...+..+.+.|++...+++|..+.-.
T Consensus 474 ~~~al~ali~alrld~-~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDa-tdaeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 474 SALALHALIRALRLDV-SLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDA-TDAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred HHHHHHHHHHHHhccc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-hhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 6666666655444321 1346888898999988899999999998876531 2567888999999999999999877322
Q ss_pred HHH-------------cC---------------------CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 047934 269 MLE-------------AG---------------------HSP-NVTTFVGLVDGLCRERGVEKAQSVIATLKE 306 (344)
Q Consensus 269 M~~-------------~g---------------------v~p-d~~ty~~lL~a~~~~G~~e~a~~l~~~M~~ 306 (344)
..+ .| +.| |...|..+..+|...|....|.++|.....
T Consensus 552 ~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~ 624 (1238)
T KOG1127|consen 552 AAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASL 624 (1238)
T ss_pred HhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHh
Confidence 211 01 123 566688888999999999999988876543
No 280
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=61.15 E-value=27 Score=20.70 Aligned_cols=28 Identities=32% Similarity=0.418 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 047934 244 FSYNLLIQGLYKCNKLEEAVEYCIEMLE 271 (344)
Q Consensus 244 ~tyn~LI~ay~k~g~~~~A~~lf~~M~~ 271 (344)
.+|..+-.+|...|++++|++.|++..+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 3566666666666777777666666554
No 281
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=60.36 E-value=1.5e+02 Score=27.66 Aligned_cols=108 Identities=8% Similarity=-0.036 Sum_probs=67.4
Q ss_pred HHHHHHHH-HcCCHHHHHHHHHHHHHCCC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 047934 212 TAVVDGFC-KAQKFDDAKRIFRKMQSNGI----APNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVD 286 (344)
Q Consensus 212 n~LI~ay~-k~g~~e~A~~vf~~M~~~gi----~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~ 286 (344)
..++...| ..+..++|.+.|+.....+. ..+...-..++...++.|..++-..+++..... .+...-..++.
T Consensus 133 ~~~~~~a~~~~~~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~---~~~~~k~~~l~ 209 (324)
T PF11838_consen 133 ALLLSLACGDPECVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNS---TSPEEKRRLLS 209 (324)
T ss_dssp HHHHHHHHT-HHHHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTT---STHHHHHHHHH
T ss_pred HHHHHHhccchhHHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhcc---CCHHHHHHHHH
Confidence 33344444 22236788999998887522 456666677777788888866655555555443 36777788999
Q ss_pred HHHHcCCHHHHHHHHHHHHHCC-CcccHHHHHHHHhcc
Q 047934 287 GLCRERGVEKAQSVIATLKEKG-FLVNDKAVREFLDKK 323 (344)
Q Consensus 287 a~~~~G~~e~a~~l~~~M~~~G-i~p~~~~~~~Ll~~y 323 (344)
+.+...+.+...++++.....+ +.+. .+...+...+
T Consensus 210 aLa~~~d~~~~~~~l~~~l~~~~v~~~-d~~~~~~~~~ 246 (324)
T PF11838_consen 210 ALACSPDPELLKRLLDLLLSNDKVRSQ-DIRYVLAGLA 246 (324)
T ss_dssp HHTT-S-HHHHHHHHHHHHCTSTS-TT-THHHHHHHHH
T ss_pred hhhccCCHHHHHHHHHHHcCCcccccH-HHHHHHHHHh
Confidence 9998999999999999988865 5443 3444444443
No 282
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=60.12 E-value=1.2e+02 Score=26.77 Aligned_cols=130 Identities=12% Similarity=0.090 Sum_probs=88.7
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHH--HHHcCC
Q 047934 183 LCKDGLIQEAMKLFGLMREKGTIPEVVIY-TAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAF-SYNLLIQG--LYKCNK 258 (344)
Q Consensus 183 ~~k~g~~~~A~~lf~~M~~~g~~pd~~ty-n~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~-tyn~LI~a--y~k~g~ 258 (344)
+++.+..++|+.-|.++.+.|...-.+.- --+-...+..|+...|...|+++-...-.|-.. -..-|=.+ +..+|.
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 45678899999999999998765433221 122233467799999999999987754444333 12222222 346889
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccc
Q 047934 259 LEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRERGVEKAQSVIATLKEKGFLVN 312 (344)
Q Consensus 259 ~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~~e~a~~l~~~M~~~Gi~p~ 312 (344)
+++.....+-+...+-..-...-.+|--+--+.|++..|.+.|..+...--.|-
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~apr 201 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAPR 201 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCcH
Confidence 998888887776665444455556676777799999999999999886544443
No 283
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=59.94 E-value=1e+02 Score=31.46 Aligned_cols=72 Identities=17% Similarity=0.187 Sum_probs=51.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccc-HHHHHHHH
Q 047934 249 LIQGLYKCNKLEEAVEYCIEMLEAG-HSPNVTTFVGLVDGLCRERGVEKAQSVIATLKEKGFLVN-DKAVREFL 320 (344)
Q Consensus 249 LI~ay~k~g~~~~A~~lf~~M~~~g-v~pd~~ty~~lL~a~~~~G~~e~a~~l~~~M~~~Gi~p~-~~~~~~Ll 320 (344)
|-.++-+.|+.++|.+.|.+|.+.- ..-..-....||.++...+...++..++..-.+.....+ ...|+..+
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaAL 338 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAAL 338 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHH
Confidence 4445557899999999999997642 222334566799999999999999999998764433222 34555555
No 284
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=58.72 E-value=28 Score=23.09 Aligned_cols=24 Identities=17% Similarity=0.289 Sum_probs=12.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCC
Q 047934 285 VDGLCRERGVEKAQSVIATLKEKG 308 (344)
Q Consensus 285 L~a~~~~G~~e~a~~l~~~M~~~G 308 (344)
-.+|...|+.+.|+++++++...|
T Consensus 6 A~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 6 ARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHcCChHHHHHHHHHHHHcC
Confidence 345555555555555555555433
No 285
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=58.51 E-value=2.6e+02 Score=30.04 Aligned_cols=125 Identities=14% Similarity=0.023 Sum_probs=90.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHc
Q 047934 178 AMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPN-AFSYNLLIQGLYKC 256 (344)
Q Consensus 178 tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd-~~tyn~LI~ay~k~ 256 (344)
..-..+.+.+..++|...+.+..+. .......|.-.=..+...|.+++|.+.|..-.. +.|+ +.+.+++-.++.+.
T Consensus 655 laa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~--ldP~hv~s~~Ala~~lle~ 731 (799)
T KOG4162|consen 655 LAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALA--LDPDHVPSMTALAELLLEL 731 (799)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh--cCCCCcHHHHHHHHHHHHh
Confidence 4566677778888887766665543 223445555555566677888888888876654 3554 55788888899999
Q ss_pred CCHHHHHH--HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 047934 257 NKLEEAVE--YCIEMLEAGHSPNVTTFVGLVDGLCRERGVEKAQSVIATLKE 306 (344)
Q Consensus 257 g~~~~A~~--lf~~M~~~gv~pd~~ty~~lL~a~~~~G~~e~a~~l~~~M~~ 306 (344)
|+...|.+ ++.++.+.+ .-+...|-.+-..+-+.|+.+.|-+-|.....
T Consensus 732 G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 732 GSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred CCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 98887777 888887764 23677888888888899999999888886554
No 286
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=58.37 E-value=2e+02 Score=28.75 Aligned_cols=148 Identities=15% Similarity=0.083 Sum_probs=90.8
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH--HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-------------HHH
Q 047934 154 SEPPQEADEIFKKMKETGLIPNAVAMLDGLC--KDGLIQEAMKLFGLMREKGTIPEVVIYTAVV-------------DGF 218 (344)
Q Consensus 154 sg~~~~A~~lf~~M~~~gi~p~~~tli~~~~--k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI-------------~ay 218 (344)
.|+.++|..+--.....+-+--...++++.+ -.++.+.|...|.+-.+. .|+...-.++- +..
T Consensus 182 ~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~l--dpdh~~sk~~~~~~k~le~~k~~gN~~ 259 (486)
T KOG0550|consen 182 LGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRL--DPDHQKSKSASMMPKKLEVKKERGNDA 259 (486)
T ss_pred cccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhcc--ChhhhhHHhHhhhHHHHHHHHhhhhhH
Confidence 4566677666665555443311223444443 245667777777665443 24433322222 224
Q ss_pred HHcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH-HHHHHHH--HHcC
Q 047934 219 CKAQKFDDAKRIFRKMQSN---GIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTF-VGLVDGL--CRER 292 (344)
Q Consensus 219 ~k~g~~e~A~~vf~~M~~~---gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty-~~lL~a~--~~~G 292 (344)
.+.|.+.+|.+.|.+-..- .+++++..|-..-....+.|++++|+.-.++.... |..-. ..+.++- ...+
T Consensus 260 fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i----D~syikall~ra~c~l~le 335 (486)
T KOG0550|consen 260 FKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI----DSSYIKALLRRANCHLALE 335 (486)
T ss_pred hhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc----CHHHHHHHHHHHHHHHHHH
Confidence 5778999999999887653 56777888888888889999999999887776554 33322 2233333 3457
Q ss_pred CHHHHHHHHHHHHHC
Q 047934 293 GVEKAQSVIATLKEK 307 (344)
Q Consensus 293 ~~e~a~~l~~~M~~~ 307 (344)
.|++|.+-++...+.
T Consensus 336 ~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 336 KWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHhh
Confidence 788888877776554
No 287
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.86 E-value=1.5e+02 Score=30.96 Aligned_cols=105 Identities=11% Similarity=0.217 Sum_probs=66.6
Q ss_pred CCCHHHHHHHHHHHHHCCCCCC-HH------------------HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 047934 154 SEPPQEADEIFKKMKETGLIPN-AV------------------AMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAV 214 (344)
Q Consensus 154 sg~~~~A~~lf~~M~~~gi~p~-~~------------------tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~L 214 (344)
.+.++.|+-+|+........|. ++ ..|..+.+.|.+.-|+++-+.+......-|....-.+
T Consensus 304 adLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ 383 (665)
T KOG2422|consen 304 ADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYL 383 (665)
T ss_pred HHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHH
Confidence 3345666666666665555442 11 2577888889999999988887776655578888888
Q ss_pred HHHHH-HcCCHHHHHHHHHHHHHCC-C-CCCHHHHHHHHHHHHHcCC
Q 047934 215 VDGFC-KAQKFDDAKRIFRKMQSNG-I-APNAFSYNLLIQGLYKCNK 258 (344)
Q Consensus 215 I~ay~-k~g~~e~A~~vf~~M~~~g-i-~pd~~tyn~LI~ay~k~g~ 258 (344)
|+.|+ ++.+++=..++++...... + ......|+.-|..+.-.++
T Consensus 384 ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~AlA~f~l~~~ 430 (665)
T KOG2422|consen 384 IDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSLALARFFLRKN 430 (665)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHHHHHHHHHhcC
Confidence 88887 5566777777777764432 1 1123456654444443333
No 288
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=57.54 E-value=2.3e+02 Score=29.12 Aligned_cols=63 Identities=3% Similarity=0.014 Sum_probs=34.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 047934 207 EVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGH 274 (344)
Q Consensus 207 d~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv 274 (344)
....|+.|+..+.. -..++..++++++... ....|..++++.+.+|......-+.+.+....+
T Consensus 309 ~~~~f~~lv~~lR~-~~~e~l~~l~~~~~~~----~~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~ 371 (574)
T smart00638 309 AAAKFLRLVRLLRT-LSEEQLEQLWRQLYEK----KKKARRIFLDAVAQAGTPPALKFIKQWIKNKKI 371 (574)
T ss_pred hHHHHHHHHHHHHh-CCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCC
Confidence 44455555555433 3345556666655431 045666666666666666655555555554444
No 289
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=56.66 E-value=1e+02 Score=24.67 Aligned_cols=51 Identities=10% Similarity=0.079 Sum_probs=33.8
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 047934 217 GFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAG 273 (344)
Q Consensus 217 ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~g 273 (344)
.+...|++++|..+.+.+ .-||...|-+|-.. +.|..+++..-+.+|...|
T Consensus 48 SLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce~--rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 48 SLMNRGDYQSALQLGNKL----CYPDLEPWLALCEW--RLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHccchHHHHHHhcCCC----CCchHHHHHHHHHH--hhccHHHHHHHHHHHHhCC
Confidence 345667777777777665 36777777776554 6677766666666666655
No 290
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=56.58 E-value=1.8e+02 Score=28.30 Aligned_cols=79 Identities=9% Similarity=0.164 Sum_probs=57.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHCC------CCCCHHHHHHHHH
Q 047934 179 MLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFC-KAQKFDDAKRIFRKMQSNG------IAPNAFSYNLLIQ 251 (344)
Q Consensus 179 li~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~-k~g~~e~A~~vf~~M~~~g------i~pd~~tyn~LI~ 251 (344)
.|..+.+.|.+..|+++.+.+......-|....-.+|+.|+ +++.++-..++.+...... .-| -..|+..+.
T Consensus 109 ~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lP-n~a~S~aLA 187 (360)
T PF04910_consen 109 YIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLP-NFAFSIALA 187 (360)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCc-cHHHHHHHH
Confidence 58888999999999999999988776667888888888887 6677877788877765520 111 256666666
Q ss_pred HHHHcCC
Q 047934 252 GLYKCNK 258 (344)
Q Consensus 252 ay~k~g~ 258 (344)
-+...+.
T Consensus 188 ~~~l~~~ 194 (360)
T PF04910_consen 188 YFRLEKE 194 (360)
T ss_pred HHHhcCc
Confidence 5554443
No 291
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=56.12 E-value=64 Score=34.19 Aligned_cols=90 Identities=14% Similarity=0.124 Sum_probs=63.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHcCCHHH------HHHHHHHHHHcCCCCCHHHHHHH
Q 047934 213 AVVDGFCKAQKFDDAKRIFRKMQSN--GIAPNAFSYNLLIQGLYKCNKLEE------AVEYCIEMLEAGHSPNVTTFVGL 284 (344)
Q Consensus 213 ~LI~ay~k~g~~e~A~~vf~~M~~~--gi~pd~~tyn~LI~ay~k~g~~~~------A~~lf~~M~~~gv~pd~~ty~~l 284 (344)
+|+.+|...|++-.+.++++.+... |-+.=...||..|....+.|.++. |.++++.- -+.-|..||..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a---~ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQA---RLNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHh---hcCCcchHHHHH
Confidence 8999999999999999999998764 444456789999999999998653 33333333 355588899888
Q ss_pred HHHHHHcCCHHHHHHHHHHHH
Q 047934 285 VDGLCRERGVEKAQSVIATLK 305 (344)
Q Consensus 285 L~a~~~~G~~e~a~~l~~~M~ 305 (344)
+.+-..--.-..+.-++.++.
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i 130 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELI 130 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHH
Confidence 877654333333344444443
No 292
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=55.76 E-value=1.2e+02 Score=25.37 Aligned_cols=60 Identities=10% Similarity=0.138 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCcccHHHHHHHHh
Q 047934 261 EAVEYCIEMLEAGHSPNVTTFVGLVDGLCRERGVEKAQSVIATLKEKGFLVNDKAVREFLD 321 (344)
Q Consensus 261 ~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~~e~a~~l~~~M~~~Gi~p~~~~~~~Ll~ 321 (344)
+..+-+..+....+.|+......-|+||.+.+++..|..+|+-++.+ ..+-...|-.+++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K-~g~~k~~Y~y~v~ 126 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK-CGAQKQVYPYYVK 126 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh-cccHHHHHHHHHH
Confidence 34455556666778888888888888888888888888888877643 1222224555554
No 293
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=54.88 E-value=1.2e+02 Score=29.05 Aligned_cols=120 Identities=14% Similarity=0.111 Sum_probs=77.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCHH----------HHHHHHHHcCCHHHHHHHHH----HHHHcCCCCCHHHHHHHH
Q 047934 150 NEPISEPPQEADEIFKKMKETGLIPNAV----------AMLDGLCKDGLIQEAMKLFG----LMREKGTIPEVVIYTAVV 215 (344)
Q Consensus 150 ~~~~sg~~~~A~~lf~~M~~~gi~p~~~----------tli~~~~k~g~~~~A~~lf~----~M~~~g~~pd~~tyn~LI 215 (344)
+...+.++++|+.++.++..+|+..+.. -+...|...|+...-.++.. .|.+---.-.+...-+||
T Consensus 12 ~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~KiirtLi 91 (421)
T COG5159 12 NAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIRTLI 91 (421)
T ss_pred HhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHHHHH
Confidence 4456778999999999999999876542 26777888887655444332 222222223556677888
Q ss_pred HHHHHcCC-HHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 047934 216 DGFCKAQK-FDDAKRIFRKMQSNGIAPNA-----FSYNLLIQGLYKCNKLEEAVEYCIEM 269 (344)
Q Consensus 216 ~ay~k~g~-~e~A~~vf~~M~~~gi~pd~-----~tyn~LI~ay~k~g~~~~A~~lf~~M 269 (344)
..+....+ +++...+.....+...+-.. ..=.-+|..|.+.|.+.+|+.+...+
T Consensus 92 ekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~l 151 (421)
T COG5159 92 EKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPL 151 (421)
T ss_pred HhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 88876654 67777776665443111111 12245889999999999998765543
No 294
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=54.31 E-value=1.9e+02 Score=28.66 Aligned_cols=124 Identities=16% Similarity=0.093 Sum_probs=86.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHHc-----CC---------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 047934 181 DGLCKDGLIQEAMKLFGLMREK-----GT---------IPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSY 246 (344)
Q Consensus 181 ~~~~k~g~~~~A~~lf~~M~~~-----g~---------~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~ty 246 (344)
+.|.+.|++..|..-|+..... +. ..-..++..|.-+|.|.+++.+|.+.-+...+.+ ..|+...
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KAL 294 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKAL 294 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHH
Confidence 3567888888888887764322 11 1234567888889999999999999999888764 2244443
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-cCCH-HHHHHHHHHHHHC
Q 047934 247 NLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCR-ERGV-EKAQSVIATLKEK 307 (344)
Q Consensus 247 n~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~-~G~~-e~a~~l~~~M~~~ 307 (344)
=-==.+|...|+++.|+..|+++.+. .|+-.+...=|..|.+ .... +...++|..|...
T Consensus 295 yRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 295 YRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKLKQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33446677789999999999999875 6777777776666654 3333 3447777777653
No 295
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=54.02 E-value=1.7e+02 Score=27.78 Aligned_cols=85 Identities=11% Similarity=0.062 Sum_probs=56.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH--
Q 047934 180 LDGLCKDGLIQEAMKLFGLMREK--GTIPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYK-- 255 (344)
Q Consensus 180 i~~~~k~g~~~~A~~lf~~M~~~--g~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k-- 255 (344)
|.+++..++|.+++...-+--+. .++|.+. ---|--|+|.+....+.++-..=...----+...|.+++.-|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIl--eLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKIL--ELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHH--HHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 88899999999887755443322 3444443 34444578888888877777665554223345568888887776
Q ss_pred ---cCCHHHHHHHH
Q 047934 256 ---CNKLEEAVEYC 266 (344)
Q Consensus 256 ---~g~~~~A~~lf 266 (344)
.|.+++|+++.
T Consensus 168 LlPLG~~~eAeelv 181 (309)
T PF07163_consen 168 LLPLGHFSEAEELV 181 (309)
T ss_pred HhccccHHHHHHHH
Confidence 48888887764
No 296
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.00 E-value=1.9e+02 Score=30.35 Aligned_cols=105 Identities=15% Similarity=0.112 Sum_probs=66.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 047934 177 VAMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKC 256 (344)
Q Consensus 177 ~tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~ 256 (344)
+.+..-+.+.|..++|+++--+ ||. -.....+.|+++.|.++-.+.. +..-|..|-++....
T Consensus 618 t~va~Fle~~g~~e~AL~~s~D-------~d~-----rFelal~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~ 679 (794)
T KOG0276|consen 618 TKVAHFLESQGMKEQALELSTD-------PDQ-----RFELALKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSA 679 (794)
T ss_pred hhHHhHhhhccchHhhhhcCCC-------hhh-----hhhhhhhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhc
Confidence 3466667777777777765321 111 1223357788888888876644 677899999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 047934 257 NKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRERGVEKAQSVIATLKEKG 308 (344)
Q Consensus 257 g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~~e~a~~l~~~M~~~G 308 (344)
+++..|.++|..-... ..|+-.+...|+.+....+-...++.|
T Consensus 680 ~~l~lA~EC~~~a~d~---------~~LlLl~t~~g~~~~l~~la~~~~~~g 722 (794)
T KOG0276|consen 680 GELPLASECFLRARDL---------GSLLLLYTSSGNAEGLAVLASLAKKQG 722 (794)
T ss_pred ccchhHHHHHHhhcch---------hhhhhhhhhcCChhHHHHHHHHHHhhc
Confidence 9999999888775543 445555555555544444444444433
No 297
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=53.74 E-value=2.6e+02 Score=28.97 Aligned_cols=35 Identities=9% Similarity=0.154 Sum_probs=23.9
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 047934 273 GHSPNVTTFVGLVDGLCRERGVEKAQSVIATLKEK 307 (344)
Q Consensus 273 gv~pd~~ty~~lL~a~~~~G~~e~a~~l~~~M~~~ 307 (344)
|..--.+.+.-+-..|....++.+|.+++..+.++
T Consensus 200 g~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~ 234 (711)
T COG1747 200 GEGRGSVLMQDVYKKYSENENWTEAIRILKHILEH 234 (711)
T ss_pred ccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhh
Confidence 33344555566667777778888888888866655
No 298
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=53.68 E-value=2.7e+02 Score=28.65 Aligned_cols=135 Identities=18% Similarity=0.149 Sum_probs=88.3
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCHH----------------H------------HHHHHHHcCCHHHHHHHHHHHHHc
Q 047934 151 EPISEPPQEADEIFKKMKETGLIPNAV----------------A------------MLDGLCKDGLIQEAMKLFGLMREK 202 (344)
Q Consensus 151 ~~~sg~~~~A~~lf~~M~~~gi~p~~~----------------t------------li~~~~k~g~~~~A~~lf~~M~~~ 202 (344)
+.+.++++.|+..|.+....-..|+.. + =-..+.+.|++.+|+..|.++++.
T Consensus 308 ~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr 387 (539)
T KOG0548|consen 308 YTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKR 387 (539)
T ss_pred hhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Confidence 334577888888888766655555432 0 134456778999999999999987
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 047934 203 GTIPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPN-AFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTF 281 (344)
Q Consensus 203 g~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd-~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty 281 (344)
. +-|...|...--+|.+.|.+..|+.=-+...+. .|+ ...|.-=-.++.-..+++.|++.|++-.+. .|+..-+
T Consensus 388 ~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--~p~~~kgy~RKg~al~~mk~ydkAleay~eale~--dp~~~e~ 462 (539)
T KOG0548|consen 388 D-PEDARLYSNRAACYLKLGEYPEALKDAKKCIEL--DPNFIKAYLRKGAALRAMKEYDKALEAYQEALEL--DPSNAEA 462 (539)
T ss_pred C-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CchhHHH
Confidence 6 568899999999999999999988876666554 222 112222222222344677777777776655 3555555
Q ss_pred HHHHHHHHH
Q 047934 282 VGLVDGLCR 290 (344)
Q Consensus 282 ~~lL~a~~~ 290 (344)
.--+.-|..
T Consensus 463 ~~~~~rc~~ 471 (539)
T KOG0548|consen 463 IDGYRRCVE 471 (539)
T ss_pred HHHHHHHHH
Confidence 545555554
No 299
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=53.17 E-value=1.9e+02 Score=26.88 Aligned_cols=36 Identities=17% Similarity=0.343 Sum_probs=18.6
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccc
Q 047934 276 PNVTTFVGLVDGLCRERGVEKAQSVIATLKEKGFLVN 312 (344)
Q Consensus 276 pd~~ty~~lL~a~~~~G~~e~a~~l~~~M~~~Gi~p~ 312 (344)
|.......+|.+|.+ +++++|.+++.++-+.|+.|.
T Consensus 237 PhP~~v~~ml~~~~~-~~~~~A~~il~~lw~lgysp~ 272 (333)
T KOG0991|consen 237 PHPLLVKKMLQACLK-RNIDEALKILAELWKLGYSPE 272 (333)
T ss_pred CChHHHHHHHHHHHh-ccHHHHHHHHHHHHHcCCCHH
Confidence 444455555555432 345555555555555555554
No 300
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=52.73 E-value=65 Score=28.01 Aligned_cols=32 Identities=9% Similarity=0.205 Sum_probs=15.9
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 047934 204 TIPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQ 235 (344)
Q Consensus 204 ~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~ 235 (344)
..|+..+|..++.++...|+.++|.++..++.
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~ 171 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARAR 171 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34455555555555555555555555444443
No 301
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.68 E-value=73 Score=34.46 Aligned_cols=114 Identities=19% Similarity=0.238 Sum_probs=59.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH----HcCCHHHHHHHH----------------------
Q 047934 178 AMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFC----KAQKFDDAKRIF---------------------- 231 (344)
Q Consensus 178 tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~----k~g~~e~A~~vf---------------------- 231 (344)
+-|..+++...++.|..+-+. .+. |..+...++..|+ +.|++++|..-|
T Consensus 339 ~kL~iL~kK~ly~~Ai~LAk~---~~~--d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~Vi~kfLdaq~I 413 (933)
T KOG2114|consen 339 TKLDILFKKNLYKVAINLAKS---QHL--DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSEVIKKFLDAQRI 413 (933)
T ss_pred HHHHHHHHhhhHHHHHHHHHh---cCC--CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHHHHHHhcCHHHH
Confidence 567778888777777766542 222 3444444444444 446666665554
Q ss_pred -------HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 047934 232 -------RKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRERGVEKAQSV 300 (344)
Q Consensus 232 -------~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~~e~a~~l 300 (344)
+.+.+.|+. +...-+.|+.+|.+.++.+...++.+...+..+..|..+ .+..|.+.+-+++|..+
T Consensus 414 knLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~---al~Ilr~snyl~~a~~L 485 (933)
T KOG2114|consen 414 KNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVET---ALEILRKSNYLDEAELL 485 (933)
T ss_pred HHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHH---HHHHHHHhChHHHHHHH
Confidence 334444443 334445666667776666666655554431112223332 44444444444444433
No 302
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=52.23 E-value=2e+02 Score=26.73 Aligned_cols=133 Identities=14% Similarity=0.037 Sum_probs=82.0
Q ss_pred CHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 047934 188 LIQEAMKLFGLMREKGT----IPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAV 263 (344)
Q Consensus 188 ~~~~A~~lf~~M~~~g~----~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~ 263 (344)
..++|.+.|+.+...+. ..+...-.+++...++.|..++-..+++..... .+...-..++.+++-..+.+...
T Consensus 145 ~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~---~~~~~k~~~l~aLa~~~d~~~~~ 221 (324)
T PF11838_consen 145 CVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNS---TSPEEKRRLLSALACSPDPELLK 221 (324)
T ss_dssp HHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTT---STHHHHHHHHHHHTT-S-HHHHH
T ss_pred HHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhcc---CCHHHHHHHHHhhhccCCHHHHH
Confidence 35678888988877422 457777788888888999877777777776654 36777889999999999999999
Q ss_pred HHHHHHHHcC-CCCCHHHHHHHHHHHHHcCCH--HHHHHHHHHH---HHCCCcccHHHHHHHHhccCC
Q 047934 264 EYCIEMLEAG-HSPNVTTFVGLVDGLCRERGV--EKAQSVIATL---KEKGFLVNDKAVREFLDKKAP 325 (344)
Q Consensus 264 ~lf~~M~~~g-v~pd~~ty~~lL~a~~~~G~~--e~a~~l~~~M---~~~Gi~p~~~~~~~Ll~~yak 325 (344)
++++.....+ +.+.. ...++.++...+.. +.+.+.+..= ....+..+......++..+..
T Consensus 222 ~~l~~~l~~~~v~~~d--~~~~~~~~~~~~~~~~~~~~~~~~~n~~~i~~~~~~~~~~~~~~~~~~~~ 287 (324)
T PF11838_consen 222 RLLDLLLSNDKVRSQD--IRYVLAGLASSNPVGRDLAWEFFKENWDAIIKKFGTNSSALSRVIKSFAG 287 (324)
T ss_dssp HHHHHHHCTSTS-TTT--HHHHHHHHH-CSTTCHHHHHHHHHHCHHHHHCHC-TTSHCCHHHHHCCCT
T ss_pred HHHHHHcCCcccccHH--HHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhc
Confidence 9998888754 54433 23455555534432 5565555531 122233332255566665554
No 303
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=52.07 E-value=2.3e+02 Score=27.48 Aligned_cols=150 Identities=15% Similarity=0.227 Sum_probs=87.8
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHH------------HHHHHHHHcC--CHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHH
Q 047934 155 EPPQEADEIFKKMKETGLIPNAV------------AMLDGLCKDG--LIQEAMKLFGLMREK-GTIPEVVIYTAVVDGFC 219 (344)
Q Consensus 155 g~~~~A~~lf~~M~~~gi~p~~~------------tli~~~~k~g--~~~~A~~lf~~M~~~-g~~pd~~tyn~LI~ay~ 219 (344)
++.+...++++.+.+.+..|=+. .++..+.+.. ++++--+..+...+. |=.--...+-..-.-||
T Consensus 36 ~~~~~~e~l~~~Ird~~Map~Ye~lce~~~i~~D~~~l~~m~~~neeki~eld~~iedaeenlGE~ev~ea~~~kaeYyc 115 (393)
T KOG0687|consen 36 QKAAAREKLLAAIRDEDMAPLYEYLCESLVIKLDQDLLNSMKKANEEKIKELDEKIEDAEENLGESEVREAMLRKAEYYC 115 (393)
T ss_pred cCHHHHHHHHHHHHhcccchHHHHHHhhcceeccHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 45778888899999988887222 2555555544 222222222232222 11011234445566788
Q ss_pred HcCCHHHHHHHHHHHHH----CCCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHH
Q 047934 220 KAQKFDDAKRIFRKMQS----NGIAPNAFSYNLLIQGLY-KCNKLEEAVEYCIEMLEAGHSPNV----TTFVGLVDGLCR 290 (344)
Q Consensus 220 k~g~~e~A~~vf~~M~~----~gi~pd~~tyn~LI~ay~-k~g~~~~A~~lf~~M~~~gv~pd~----~ty~~lL~a~~~ 290 (344)
..|+-+.|++.++...+ .|.+.|++-+..-+.-+. ...-+.+-++..+.|.+.|...+. .+|-.+- |..
T Consensus 116 qigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKvY~Gly--~ms 193 (393)
T KOG0687|consen 116 QIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKVYQGLY--CMS 193 (393)
T ss_pred HhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHHHHHHH--HHH
Confidence 88888888887776644 477778777665554333 334455666666677777765443 4455442 345
Q ss_pred cCCHHHHHHHHHHHHH
Q 047934 291 ERGVEKAQSVIATLKE 306 (344)
Q Consensus 291 ~G~~e~a~~l~~~M~~ 306 (344)
..++.+|-.+|-+...
T Consensus 194 vR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 194 VRNFKEAADLFLDSVS 209 (393)
T ss_pred HHhHHHHHHHHHHHcc
Confidence 5677887777776554
No 304
>PF13934 ELYS: Nuclear pore complex assembly
Probab=52.07 E-value=1.1e+02 Score=27.64 Aligned_cols=109 Identities=16% Similarity=0.174 Sum_probs=62.4
Q ss_pred CCCCCCHHHHHHHHHHc--CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 047934 170 TGLIPNAVAMLDGLCKD--GLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYN 247 (344)
Q Consensus 170 ~gi~p~~~tli~~~~k~--g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn 247 (344)
-++.+.....+.|+-.. +++++|.+++-. -.+.|+- -.-+|.++...|+.+.|..+++.+.-... +...-.
T Consensus 73 f~ip~~~~~~~~g~W~LD~~~~~~A~~~L~~---ps~~~~~--~~~Il~~L~~~~~~~lAL~y~~~~~p~l~--s~~~~~ 145 (226)
T PF13934_consen 73 FGIPPKYIKFIQGFWLLDHGDFEEALELLSH---PSLIPWF--PDKILQALLRRGDPKLALRYLRAVGPPLS--SPEALT 145 (226)
T ss_pred hCCCHHHHHHHHHHHHhChHhHHHHHHHhCC---CCCCccc--HHHHHHHHHHCCChhHHHHHHHhcCCCCC--CHHHHH
Confidence 46777777788887754 566677766622 1222221 12477777778888888888876543211 222223
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 047934 248 LLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLC 289 (344)
Q Consensus 248 ~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~ 289 (344)
.++.. ..++.+.+|..+-+...+.. ....+..++..|.
T Consensus 146 ~~~~~-La~~~v~EAf~~~R~~~~~~---~~~l~e~l~~~~~ 183 (226)
T PF13934_consen 146 LYFVA-LANGLVTEAFSFQRSYPDEL---RRRLFEQLLEHCL 183 (226)
T ss_pred HHHHH-HHcCCHHHHHHHHHhCchhh---hHHHHHHHHHHHH
Confidence 33333 55688888887666554421 1345555555555
No 305
>PHA02875 ankyrin repeat protein; Provisional
Probab=52.01 E-value=64 Score=31.45 Aligned_cols=21 Identities=10% Similarity=0.020 Sum_probs=9.1
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCcc
Q 047934 287 GLCRERGVEKAQSVIATLKEKGFLV 311 (344)
Q Consensus 287 a~~~~G~~e~a~~l~~~M~~~Gi~p 311 (344)
..+..|+.+. ++.+.+.|..+
T Consensus 174 ~A~~~g~~ei----v~~Ll~~ga~~ 194 (413)
T PHA02875 174 IAMAKGDIAI----CKMLLDSGANI 194 (413)
T ss_pred HHHHcCCHHH----HHHHHhCCCCC
Confidence 3344455443 33344444444
No 306
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=51.84 E-value=1.5e+02 Score=25.10 Aligned_cols=92 Identities=21% Similarity=0.126 Sum_probs=67.5
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCCH---HHHHHHHHHHHHcC
Q 047934 217 GFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEA-GHSPNV---TTFVGLVDGLCRER 292 (344)
Q Consensus 217 ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~-gv~pd~---~ty~~lL~a~~~~G 292 (344)
+.+..|+++.|++.|.+-...- .-....||.--.+|--.|+.++|++=+++-.+. |-+ +. ..|.---..|...|
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHhC
Confidence 4578899999999999877642 236778999999999999999999888887764 322 22 22333334466789
Q ss_pred CHHHHHHHHHHHHHCCCc
Q 047934 293 GVEKAQSVIATLKEKGFL 310 (344)
Q Consensus 293 ~~e~a~~l~~~M~~~Gi~ 310 (344)
+.+.|+.=|+..-+.|-+
T Consensus 130 ~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLGSK 147 (175)
T ss_pred chHHHHHhHHHHHHhCCH
Confidence 999999888887776643
No 307
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=51.02 E-value=44 Score=31.80 Aligned_cols=35 Identities=23% Similarity=0.255 Sum_probs=17.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 047934 247 NLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTF 281 (344)
Q Consensus 247 n~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty 281 (344)
+..|....+.|++++|+.+++|-++.|+.--..||
T Consensus 261 ~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 261 NQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 45555555555555555555555555544333333
No 308
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=50.82 E-value=16 Score=30.58 Aligned_cols=28 Identities=32% Similarity=0.589 Sum_probs=15.2
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 047934 223 KFDDAKRIFRKMQSNGIAPNAFSYNLLIQG 252 (344)
Q Consensus 223 ~~e~A~~vf~~M~~~gi~pd~~tyn~LI~a 252 (344)
.-.+|..||+.|.+.|-.|| .|+.|+..
T Consensus 110 sk~DaY~VF~kML~~G~pPd--dW~~Ll~~ 137 (140)
T PF11663_consen 110 SKTDAYAVFRKMLERGNPPD--DWDALLKE 137 (140)
T ss_pred cCCcHHHHHHHHHhCCCCCc--cHHHHHHH
Confidence 34455566666666665555 35555543
No 309
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=50.22 E-value=3.1e+02 Score=28.34 Aligned_cols=149 Identities=19% Similarity=0.162 Sum_probs=92.0
Q ss_pred CHHHHHHHHHHHHHCCCCCCHH----HHHHH-HHHcCCHHHHHHHHHHHHH-------cCCCCCHHHHHHHHHHHHHcC-
Q 047934 156 PPQEADEIFKKMKETGLIPNAV----AMLDG-LCKDGLIQEAMKLFGLMRE-------KGTIPEVVIYTAVVDGFCKAQ- 222 (344)
Q Consensus 156 ~~~~A~~lf~~M~~~gi~p~~~----tli~~-~~k~g~~~~A~~lf~~M~~-------~g~~pd~~tyn~LI~ay~k~g- 222 (344)
...+|.+.++.....|..-... ....+ +....+.+.|+.+|+...+ .| +.....-|=.+|.+..
T Consensus 227 ~~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~ 303 (552)
T KOG1550|consen 227 ELSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLG 303 (552)
T ss_pred hhhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCC
Confidence 4678999999988887542222 24444 6677899999999998877 44 3334555556666543
Q ss_pred ----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HcCCHH
Q 047934 223 ----KFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYK-CNKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLC--RERGVE 295 (344)
Q Consensus 223 ----~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k-~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~--~~G~~e 295 (344)
+.+.|+.+|..-.+.|.. +....-..+..... ..+...|.++|..-...|.. +..-+.+++..+. ...+.+
T Consensus 304 ~~~~d~~~A~~~~~~aA~~g~~-~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~gv~r~~~ 381 (552)
T KOG1550|consen 304 VEKIDYEKALKLYTKAAELGNP-DAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELGLGVERNLE 381 (552)
T ss_pred CccccHHHHHHHHHHHHhcCCc-hHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCCcCCCHH
Confidence 567788888887776633 33322222222222 24567888888888777732 2222222222222 233677
Q ss_pred HHHHHHHHHHHCCC
Q 047934 296 KAQSVIATLKEKGF 309 (344)
Q Consensus 296 ~a~~l~~~M~~~Gi 309 (344)
.|..++....++|.
T Consensus 382 ~A~~~~k~aA~~g~ 395 (552)
T KOG1550|consen 382 LAFAYYKKAAEKGN 395 (552)
T ss_pred HHHHHHHHHHHccC
Confidence 88888888887773
No 310
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=49.75 E-value=4.1e+02 Score=29.63 Aligned_cols=96 Identities=17% Similarity=0.111 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC----------------------HHHHHHHHHHHHHcCCCCCHHHH
Q 047934 224 FDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNK----------------------LEEAVEYCIEMLEAGHSPNVTTF 281 (344)
Q Consensus 224 ~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~----------------------~~~A~~lf~~M~~~gv~pd~~ty 281 (344)
-.+|..+-..|.+. =++||+|+++.|. .|...+.|.++...=-.-|..++
T Consensus 1163 r~da~klk~~me~q--------k~tli~AL~kKg~a~ak~e~l~g~~e~daeee~s~ld~~~e~y~el~kw~d~~dsK~~ 1234 (1304)
T KOG1114|consen 1163 RPDAVKLKKKMEKQ--------KDTLIDALVKKGEAFAKYEALKGHKEQDAEEELSKLDSYNENYQELLKWLDASDSKVW 1234 (1304)
T ss_pred cchHHHHHHHHHHH--------HHHHHHHHHHhhhHHhhhhhhcccccccchhhhhhhhhHHHHHHHHHHHhhcCCchhe
Confidence 34566666666552 3566666665543 23334555555544223356666
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH-CCCcccHHHHHHHHhccCCCC
Q 047934 282 VGLVDGLCRERGVEKAQSVIATLKE-KGFLVNDKAVREFLDKKAPFS 327 (344)
Q Consensus 282 ~~lL~a~~~~G~~e~a~~l~~~M~~-~Gi~p~~~~~~~Ll~~yak~g 327 (344)
..-...+...|.+-.|.+++.++.+ .|-.++...|-.+++.+...|
T Consensus 1235 ~~a~~ha~~~~~yGr~lK~l~kliee~~es~t~~~~~~~~el~~~Lg 1281 (1304)
T KOG1114|consen 1235 QIAKKHAKALGQYGRALKALLKLIEENGESATKDVAVLLAELLENLG 1281 (1304)
T ss_pred ehhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhC
Confidence 6666666677888888888887765 466777777776666655555
No 311
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=49.07 E-value=1e+02 Score=23.70 Aligned_cols=38 Identities=13% Similarity=0.194 Sum_probs=17.6
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 047934 220 KAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEA 262 (344)
Q Consensus 220 k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A 262 (344)
..|+.+.|+++++.+. +| ..-|..+++++-..|.-+.|
T Consensus 48 ~~g~~~~ar~LL~~L~-rg----~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 48 NHGNESGARELLKRIV-QK----EGWFSKFLQALRETEHHELA 85 (88)
T ss_pred ccCcHHHHHHHHHHhc-cC----CcHHHHHHHHHHHcCchhhh
Confidence 3344555555555554 32 12344555555555544443
No 312
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=48.89 E-value=78 Score=26.54 Aligned_cols=61 Identities=21% Similarity=0.241 Sum_probs=39.0
Q ss_pred HHHHHHHHCCCCCCH--HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 047934 162 EIFKKMKETGLIPNA--VAMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQ 222 (344)
Q Consensus 162 ~lf~~M~~~gi~p~~--~tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g 222 (344)
++...+.++|++++. ..++..+...+..-.|.++|+++.+.+......|.=.-|+.+...|
T Consensus 7 ~~~~~lk~~glr~T~qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 7 DAIERLKEAGLRLTPQRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHHcCCCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 445666777776554 3678888877777888888888887765554444333334444444
No 313
>PF09435 DUF2015: Fungal protein of unknown function (DUF2015); InterPro: IPR018559 This entry represents uncharacterised proteins found in fungi.
Probab=48.86 E-value=91 Score=25.75 Aligned_cols=61 Identities=16% Similarity=0.171 Sum_probs=42.6
Q ss_pred hhhhhcCCCCCCCCCcccccchhcccccCCCCCCCC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHcCCHHHHHHHHH-
Q 047934 120 DQFKLAIDKKPGNPQQNESLGQRQEQKPNRNEPISE-PPQEADEIFKKMKETGLIPNAVAMLDGLCKDGLIQEAMKLFG- 197 (344)
Q Consensus 120 ~k~gl~~~~~v~~~l~~~~~~~~~y~~~~~~~~~sg-~~~~A~~lf~~M~~~gi~p~~~tli~~~~k~g~~~~A~~lf~- 197 (344)
++.||.++.|--++.+. .....+| +-..-.+|.+-|+++++. +++|..+|-
T Consensus 58 ~eaGLsSs~FDl~~Ni~------------~~D~R~GLD~~ak~EI~~IM~~~~v~---------------FDeARliy~~ 110 (128)
T PF09435_consen 58 IEAGLSSSNFDLSSNIN------------SGDSRAGLDDAAKREIRRIMKRRRVN---------------FDEARLIYTE 110 (128)
T ss_pred HHccccccccChhhccc------------CCCcccCcCHHHHHHHHHHHHHcCCC---------------HHHHHHHHHH
Confidence 47799999997555541 2334455 344457788889888887 689988885
Q ss_pred -HHHHcCCCCC
Q 047934 198 -LMREKGTIPE 207 (344)
Q Consensus 198 -~M~~~g~~pd 207 (344)
.|.+.|+.||
T Consensus 111 ~~f~~NgI~pd 121 (128)
T PF09435_consen 111 RRFKKNGIGPD 121 (128)
T ss_pred HHHHHcCCCCC
Confidence 4668888776
No 314
>PRK11906 transcriptional regulator; Provisional
Probab=48.57 E-value=3.1e+02 Score=27.81 Aligned_cols=143 Identities=13% Similarity=0.085 Sum_probs=82.1
Q ss_pred CHHHHHHHHHHHHH-CCCCCCHH---HHHHHHH---------H-cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 047934 156 PPQEADEIFKKMKE-TGLIPNAV---AMLDGLC---------K-DGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKA 221 (344)
Q Consensus 156 ~~~~A~~lf~~M~~-~gi~p~~~---tli~~~~---------k-~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~ 221 (344)
+.+.|..+|.+... ..+.|+.. +++.-|- . .....+|.++-+...+.+ .-|......+=.+..-.
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence 67788888988773 23455443 1111111 1 223445666665555543 23666666666666777
Q ss_pred CCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 047934 222 QKFDDAKRIFRKMQSNGIAPN-AFSYNLLIQGLYKCNKLEEAVEYCIEMLEA-GHSPNVTTFVGLVDGLCRERGVEKAQS 299 (344)
Q Consensus 222 g~~e~A~~vf~~M~~~gi~pd-~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~-gv~pd~~ty~~lL~a~~~~G~~e~a~~ 299 (344)
++++.|..+|++.... .|| ..+|-..-..++-+|+.++|.+.+++-.+. -...-.......|+.|+..+ ++.+..
T Consensus 352 ~~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~-~~~~~~ 428 (458)
T PRK11906 352 GQAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP-LKNNIK 428 (458)
T ss_pred cchhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc-hhhhHH
Confidence 7799999999887765 344 334444444445678899999888885443 22222333444555565554 455555
Q ss_pred HHH
Q 047934 300 VIA 302 (344)
Q Consensus 300 l~~ 302 (344)
++-
T Consensus 429 ~~~ 431 (458)
T PRK11906 429 LYY 431 (458)
T ss_pred HHh
Confidence 554
No 315
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=48.33 E-value=2.3e+02 Score=26.26 Aligned_cols=147 Identities=7% Similarity=0.050 Sum_probs=83.2
Q ss_pred HHHHHHHHcCCH---HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-
Q 047934 178 AMLDGLCKDGLI---QEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGL- 253 (344)
Q Consensus 178 tli~~~~k~g~~---~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay- 253 (344)
.++.+|...+.. ++|..+.+.+... +.-...+|--=|..+.+.++.+++.+++.+|...- ......+..++..+
T Consensus 89 ~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~l~~i~ 166 (278)
T PF08631_consen 89 LLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSILHHIK 166 (278)
T ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHHHHHHH
Confidence 367777777754 4577777777544 22235555556677777899999999999998862 21334455555544
Q ss_pred --HHcCCHHHHHHHHHHHHHcCCCCCHH-HHH-HHHHH---HHHcC------CHHHHHHHHHHHHH-CCCcccHHHHHHH
Q 047934 254 --YKCNKLEEAVEYCIEMLEAGHSPNVT-TFV-GLVDG---LCRER------GVEKAQSVIATLKE-KGFLVNDKAVREF 319 (344)
Q Consensus 254 --~k~g~~~~A~~lf~~M~~~gv~pd~~-ty~-~lL~a---~~~~G------~~e~a~~l~~~M~~-~Gi~p~~~~~~~L 319 (344)
... ....|...++.+....+.|... -.. .++.. +...+ .++...++++.+.+ .+-..+..+..++
T Consensus 167 ~l~~~-~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~~a~ 245 (278)
T PF08631_consen 167 QLAEK-SPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAASAI 245 (278)
T ss_pred HHHhh-CcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 443 3456777777777666655553 111 11111 11211 15555556664443 3555566666665
Q ss_pred HhccCCCC
Q 047934 320 LDKKAPFS 327 (344)
Q Consensus 320 l~~yak~g 327 (344)
.....+.|
T Consensus 246 ~~LLW~~~ 253 (278)
T PF08631_consen 246 HTLLWNKG 253 (278)
T ss_pred HHHHHHHH
Confidence 54443333
No 316
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=48.25 E-value=1.2e+02 Score=28.98 Aligned_cols=73 Identities=12% Similarity=0.064 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----cCCCCCHHHHH
Q 047934 209 VIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLE-----AGHSPNVTTFV 282 (344)
Q Consensus 209 ~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~-----~gv~pd~~ty~ 282 (344)
.+++..-+.|..+|.+.+|.++.+...... +.+...|-.|+..|+..|+--.|.+-+++|.+ .|+..|...++
T Consensus 280 kllgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsiee 357 (361)
T COG3947 280 KLLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIEE 357 (361)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHHH
Confidence 345667788999999999999998877652 44667888999999999998888888888764 47776655544
No 317
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=48.22 E-value=58 Score=31.76 Aligned_cols=81 Identities=15% Similarity=0.169 Sum_probs=59.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 047934 181 DGLCKDGLIQEAMKLFGLMREKGTIP-EVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKL 259 (344)
Q Consensus 181 ~~~~k~g~~~~A~~lf~~M~~~g~~p-d~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~ 259 (344)
+-|.+.|.+++|...|..-.. +.| |.++|..--.+|.+...+..|+.=....... =...+.+|.+.+..
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL--------d~~Y~KAYSRR~~A 174 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL--------DKLYVKAYSRRMQA 174 (536)
T ss_pred hhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh--------hHHHHHHHHHHHHH
Confidence 458899999999999976544 334 8899999999999999988877665554432 23567788887777
Q ss_pred HHHHHHHHHHHH
Q 047934 260 EEAVEYCIEMLE 271 (344)
Q Consensus 260 ~~A~~lf~~M~~ 271 (344)
.+++....+.++
T Consensus 175 R~~Lg~~~EAKk 186 (536)
T KOG4648|consen 175 RESLGNNMEAKK 186 (536)
T ss_pred HHHHhhHHHHHH
Confidence 666666655544
No 318
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=47.92 E-value=35 Score=22.63 Aligned_cols=22 Identities=5% Similarity=0.318 Sum_probs=12.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHH
Q 047934 215 VDGFCKAQKFDDAKRIFRKMQS 236 (344)
Q Consensus 215 I~ay~k~g~~e~A~~vf~~M~~ 236 (344)
-.+|.+.|+.+.|+.+++++..
T Consensus 6 A~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 6 ARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHcCChHHHHHHHHHHHH
Confidence 3455555555555555555554
No 319
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=47.80 E-value=1e+02 Score=26.79 Aligned_cols=53 Identities=13% Similarity=0.009 Sum_probs=34.3
Q ss_pred HcCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 047934 255 KCNKLEEAVEYCIEMLE-AGHSPNVTTFVGLVDGLCRERGVEKAQSVIATLKEK 307 (344)
Q Consensus 255 k~g~~~~A~~lf~~M~~-~gv~pd~~ty~~lL~a~~~~G~~e~a~~l~~~M~~~ 307 (344)
...+.+......+.+.+ ....|+..+|..++.++...|+.++|.++..++...
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 44444444444444333 245678888888888888888888888777776653
No 320
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.78 E-value=1.2e+02 Score=32.51 Aligned_cols=125 Identities=14% Similarity=0.185 Sum_probs=85.9
Q ss_pred CCCCCHHHHHHHHHHcCCHH---H-------HHHHHHHHHHc-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 047934 171 GLIPNAVAMLDGLCKDGLIQ---E-------AMKLFGLMREK-GTIPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGI 239 (344)
Q Consensus 171 gi~p~~~tli~~~~k~g~~~---~-------A~~lf~~M~~~-g~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi 239 (344)
+..|+..+.-.+|++..... + -+++++.+... |..-.--+.+--+.-+...|...+|.++-.+.+
T Consensus 636 ~r~~~lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk---- 711 (829)
T KOG2280|consen 636 GRIPALKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK---- 711 (829)
T ss_pred ccchhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----
Confidence 44555556667777665421 1 12222223221 322233344555556778899999999988776
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 047934 240 APNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRERGVEKAQSVIATLK 305 (344)
Q Consensus 240 ~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~~e~a~~l~~~M~ 305 (344)
-||-..|-.=+.+++..++|++-+++-..++ .+.-|.-++.+|.+.|+.++|.+++....
T Consensus 712 ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~ 771 (829)
T KOG2280|consen 712 IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVG 771 (829)
T ss_pred CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccC
Confidence 4699999999999999999998887665554 25567789999999999999999987643
No 321
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=47.44 E-value=1.8e+02 Score=24.96 Aligned_cols=101 Identities=13% Similarity=0.094 Sum_probs=60.2
Q ss_pred CHHHHHHHHHHH---HHcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH
Q 047934 207 EVVIYTAVVDGF---CKAQKFDDAKRIFRKMQSNGIAPN---AFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTT 280 (344)
Q Consensus 207 d~~tyn~LI~ay---~k~g~~e~A~~vf~~M~~~gi~pd---~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~t 280 (344)
+..+.+.||+.. .+.++.++++.+++.|... .|. ..++-.+| +...|+|++|..+|+++.+.. |....
T Consensus 6 ~~~iv~gLie~~~~al~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l--~i~r~~w~dA~rlLr~l~~~~--~~~p~ 79 (160)
T PF09613_consen 6 SDEIVGGLIEVLSVALRLGDPDDAEALLDALRVL--RPEFPELDLFDGWL--HIVRGDWDDALRLLRELEERA--PGFPY 79 (160)
T ss_pred cHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHh--CCCchHHHHHHHHH--HHHhCCHHHHHHHHHHHhccC--CCChH
Confidence 344555555554 4667899999999999875 344 33444444 568999999999999987653 33333
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCcccH
Q 047934 281 FVGLVDGLCRERGVEKAQSVIATLKEKGFLVND 313 (344)
Q Consensus 281 y~~lL~a~~~~G~~e~a~~l~~~M~~~Gi~p~~ 313 (344)
-.+|+..|.....=..=...-+++.+.+-.|+.
T Consensus 80 ~kALlA~CL~~~~D~~Wr~~A~evle~~~d~~a 112 (160)
T PF09613_consen 80 AKALLALCLYALGDPSWRRYADEVLESGADPDA 112 (160)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhcCCChHH
Confidence 344555554433222223333445555544443
No 322
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=47.37 E-value=1.9e+02 Score=32.66 Aligned_cols=140 Identities=14% Similarity=0.205 Sum_probs=75.7
Q ss_pred CCCHHHHHHHHHHHHHCC-----CCC-----CHHHHHHHHHHcC--CHHHHHHHHHHH--HHcC---CCCCHHHHHHHHH
Q 047934 154 SEPPQEADEIFKKMKETG-----LIP-----NAVAMLDGLCKDG--LIQEAMKLFGLM--REKG---TIPEVVIYTAVVD 216 (344)
Q Consensus 154 sg~~~~A~~lf~~M~~~g-----i~p-----~~~tli~~~~k~g--~~~~A~~lf~~M--~~~g---~~pd~~tyn~LI~ 216 (344)
+.|+.+=+-+++++...- ..- .+..-|..+...| .+++++.+.+.= ...+ .+|+...+..+..
T Consensus 864 qkDPkEyLP~L~el~~m~~~~rkF~ID~~L~ry~~AL~hLs~~~~~~~~e~~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~ 943 (1265)
T KOG1920|consen 864 QKDPKEYLPFLNELKKMETLLRKFKIDDYLKRYEDALSHLSECGETYFPECKNYIKKHGLYDEALALYKPDSEKQKVIYE 943 (1265)
T ss_pred ccChHHHHHHHHHHhhchhhhhheeHHHHHHHHHHHHHHHHHcCccccHHHHHHHHhcccchhhhheeccCHHHHHHHHH
Confidence 447888888888777321 110 1123444455555 555555544321 1111 3567777766666
Q ss_pred HHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHH
Q 047934 217 GFCK----AQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTT--FVGLVDGLCR 290 (344)
Q Consensus 217 ay~k----~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~t--y~~lL~a~~~ 290 (344)
+|+. ...+++|--.|+..-+ .---+.+|-.+|+|++|+.+-.+|.... |... --.|..-|..
T Consensus 944 ~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~~---de~~~~a~~L~s~L~e 1011 (1265)
T KOG1920|consen 944 AYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEGK---DELVILAEELVSRLVE 1011 (1265)
T ss_pred HHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCCH---HHHHHHHHHHHHHHHH
Confidence 6554 3566777666654422 1234667777888888877777665321 2211 1345555666
Q ss_pred cCCHHHHHHHHHHHH
Q 047934 291 ERGVEKAQSVIATLK 305 (344)
Q Consensus 291 ~G~~e~a~~l~~~M~ 305 (344)
.+..-+|-++..+..
T Consensus 1012 ~~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 1012 QRKHYEAAKILLEYL 1026 (1265)
T ss_pred cccchhHHHHHHHHh
Confidence 666666655555543
No 323
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=46.48 E-value=60 Score=19.09 Aligned_cols=28 Identities=7% Similarity=0.310 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 047934 209 VIYTAVVDGFCKAQKFDDAKRIFRKMQS 236 (344)
Q Consensus 209 ~tyn~LI~ay~k~g~~e~A~~vf~~M~~ 236 (344)
.+|..+-.+|...|++++|+..|++..+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 4667777788888888888888887765
No 324
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=46.18 E-value=1.1e+02 Score=29.45 Aligned_cols=59 Identities=15% Similarity=0.273 Sum_probs=47.8
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 047934 227 AKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCR 290 (344)
Q Consensus 227 A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~ 290 (344)
=.++|+.|.+.++.|.-+++.-+.-.+.++=.+.+++.+++.+... ..-|..|+..||.
T Consensus 262 D~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD-----~~rfd~Ll~iCcs 320 (370)
T KOG4567|consen 262 DEELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD-----PQRFDFLLYICCS 320 (370)
T ss_pred hHHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC-----hhhhHHHHHHHHH
Confidence 3568888888999999888888888888888899999999988763 4447778888875
No 325
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=45.98 E-value=38 Score=24.45 Aligned_cols=49 Identities=22% Similarity=0.279 Sum_probs=25.0
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 047934 241 PNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCR 290 (344)
Q Consensus 241 pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~ 290 (344)
|....++-|++.+++..-.++++..+.+....|. .+..+|.--++.+++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAR 54 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 3444555555555555555555555555555553 344555544444444
No 326
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=45.60 E-value=1.6e+02 Score=23.71 Aligned_cols=90 Identities=16% Similarity=0.072 Sum_probs=39.4
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 047934 217 GFCKAQKFDDAKRIFRKMQSNGI--APNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRERGV 294 (344)
Q Consensus 217 ay~k~g~~e~A~~vf~~M~~~gi--~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~~ 294 (344)
.+...|+++.|...|........ ......+......+...+..+.|...+.+............+..+-..+...+..
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKY 218 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccH
Confidence 44555555555555555433110 0122223333333444455555555555544432111234444444444555555
Q ss_pred HHHHHHHHHHHH
Q 047934 295 EKAQSVIATLKE 306 (344)
Q Consensus 295 e~a~~l~~~M~~ 306 (344)
+.+...+.....
T Consensus 219 ~~a~~~~~~~~~ 230 (291)
T COG0457 219 EEALEYYEKALE 230 (291)
T ss_pred HHHHHHHHHHHh
Confidence 555555555444
No 327
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=45.57 E-value=1e+02 Score=23.74 Aligned_cols=43 Identities=16% Similarity=0.230 Sum_probs=28.2
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 047934 194 KLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQS 236 (344)
Q Consensus 194 ~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~ 236 (344)
++|+.-+..|+..|..+|-.+++-.--+=..+...++++.|..
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s 71 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCS 71 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence 5666666667666777777666666655566666666666643
No 328
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=45.45 E-value=61 Score=18.83 Aligned_cols=27 Identities=37% Similarity=0.546 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 047934 245 SYNLLIQGLYKCNKLEEAVEYCIEMLE 271 (344)
Q Consensus 245 tyn~LI~ay~k~g~~~~A~~lf~~M~~ 271 (344)
.|..+=..|.+.|++++|++.|++..+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 344455556666666666666665543
No 329
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=45.35 E-value=2.6e+02 Score=26.15 Aligned_cols=109 Identities=10% Similarity=0.050 Sum_probs=60.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 047934 179 MLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNK 258 (344)
Q Consensus 179 li~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~ 258 (344)
++..+-+.....+.++.+..+. ....-...|......|++..|.++....... ...+.-+-..---..+
T Consensus 104 Il~~~rkr~~l~~ll~~L~~i~------~v~~~~~~l~~ll~~~dy~~Al~li~~~~~~-----l~~l~~~~c~~~L~~~ 172 (291)
T PF10475_consen 104 ILRLQRKRQNLKKLLEKLEQIK------TVQQTQSRLQELLEEGDYPGALDLIEECQQL-----LEELKGYSCVRHLSSQ 172 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-----HHhcccchHHHHHhHH
Confidence 3444444444444555444443 2344455677777889999999988887652 0111111000001123
Q ss_pred HHHHHHHHHHHHHc-----CCCCCHHHHHHHHHHHHHcCCHHHHH
Q 047934 259 LEEAVEYCIEMLEA-----GHSPNVTTFVGLVDGLCRERGVEKAQ 298 (344)
Q Consensus 259 ~~~A~~lf~~M~~~-----gv~pd~~ty~~lL~a~~~~G~~e~a~ 298 (344)
+++.....+++.+. -...|+..|..++.||...|+...+.
T Consensus 173 L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~ 217 (291)
T PF10475_consen 173 LQETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAM 217 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHH
Confidence 34444444444432 12578899999999999988766543
No 330
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=44.95 E-value=84 Score=30.73 Aligned_cols=77 Identities=8% Similarity=-0.096 Sum_probs=41.6
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHCC-CCCCH-HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 047934 147 PNRNEPISEPPQEADEIFKKMKETG-LIPNA-VAMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKF 224 (344)
Q Consensus 147 ~~~~~~~sg~~~~A~~lf~~M~~~g-i~p~~-~tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~ 224 (344)
.+-.|++.|++++|+..+..-.... ..|-. .--..+|.+..++..|..--...... -...+.+|++.+..
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL--------d~~Y~KAYSRR~~A 174 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL--------DKLYVKAYSRRMQA 174 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh--------hHHHHHHHHHHHHH
Confidence 3456778999999999987644321 11111 12345677777777665544433321 12345566655444
Q ss_pred HHHHHHH
Q 047934 225 DDAKRIF 231 (344)
Q Consensus 225 e~A~~vf 231 (344)
..++...
T Consensus 175 R~~Lg~~ 181 (536)
T KOG4648|consen 175 RESLGNN 181 (536)
T ss_pred HHHHhhH
Confidence 4443333
No 331
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=44.90 E-value=40 Score=19.16 Aligned_cols=15 Identities=20% Similarity=0.202 Sum_probs=6.1
Q ss_pred HHHHHcCCHHHHHHH
Q 047934 251 QGLYKCNKLEEAVEY 265 (344)
Q Consensus 251 ~ay~k~g~~~~A~~l 265 (344)
.++...|++++|..+
T Consensus 9 ~~~~~~G~~~eA~~~ 23 (26)
T PF07721_consen 9 RALLAQGDPDEAERL 23 (26)
T ss_pred HHHHHcCCHHHHHHH
Confidence 333344444444433
No 332
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=44.10 E-value=1.5e+02 Score=27.19 Aligned_cols=77 Identities=13% Similarity=0.100 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHH
Q 047934 210 IYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEA--GHSPNVTTFVGLVDG 287 (344)
Q Consensus 210 tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~--gv~pd~~ty~~lL~a 287 (344)
|.+.-|+.+.+.+.+.+|....++-.+.. .-|.-+=..++.-||-.|+|++|..-++-.... ...+-..+|..+|.+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 34556677778888888888777655542 224556667888888889998887766655432 223344556555553
No 333
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=43.61 E-value=1.4e+02 Score=22.96 Aligned_cols=36 Identities=11% Similarity=0.124 Sum_probs=17.2
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 047934 187 GLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDA 227 (344)
Q Consensus 187 g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A 227 (344)
|+.+.|.+++..+. +| ...|..+++++-..|.-+.|
T Consensus 50 g~~~~ar~LL~~L~-rg----~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 50 GNESGARELLKRIV-QK----EGWFSKFLQALRETEHHELA 85 (88)
T ss_pred CcHHHHHHHHHHhc-cC----CcHHHHHHHHHHHcCchhhh
Confidence 45555555555554 31 23445555555555544433
No 334
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=43.09 E-value=2.1e+02 Score=24.41 Aligned_cols=50 Identities=18% Similarity=0.296 Sum_probs=27.4
Q ss_pred cCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 047934 186 DGLIQEAMKLFGLMREKG-TIPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQSN 237 (344)
Q Consensus 186 ~g~~~~A~~lf~~M~~~g-~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~ 237 (344)
.++.+++..+++.|.-.. -.+...+|...|. ...|++++|.++|+.+.+.
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~--i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLL--IARGNYDEAARILRELLSS 73 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHH--HHcCCHHHHHHHHHhhhcc
Confidence 556666666666664321 1123444444443 3566666666666666654
No 335
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=43.03 E-value=1.7e+02 Score=23.23 Aligned_cols=27 Identities=15% Similarity=0.144 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 047934 245 SYNLLIQGLYKCNKLEEAVEYCIEMLE 271 (344)
Q Consensus 245 tyn~LI~ay~k~g~~~~A~~lf~~M~~ 271 (344)
-|..|+.-|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 688899999999999999999988877
No 336
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=42.80 E-value=2.9e+02 Score=28.61 Aligned_cols=124 Identities=14% Similarity=0.065 Sum_probs=67.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 047934 176 AVAMLDGLCKDGLIQEAMKLFGLMREKGTIPEVV---IYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQG 252 (344)
Q Consensus 176 ~~tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~---tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~a 252 (344)
...++.-|.+.+.+++|..++..|.=. .. -.. +.+++++.+.+..--++.+..++.+...=..|....--..+.-
T Consensus 411 ~~eL~~~yl~~~qi~eAi~lL~smnW~-~~-g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algsF~ap~rpl~~~~~~e 488 (545)
T PF11768_consen 411 LVELISQYLRCDQIEEAINLLLSMNWN-TM-GEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGSFYAPTRPLSDATVLE 488 (545)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCcc-cc-HHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhhccCCCcCccHHHHHH
Confidence 345888999999999999998877311 11 122 3355556666666556666666666554333332222233333
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 047934 253 LYKCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRERGVEKAQSVIATLKEKG 308 (344)
Q Consensus 253 y~k~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~~e~a~~l~~~M~~~G 308 (344)
|.. -=.+-|.++|..|...+ .|.-...--...|+.|.-++++......|
T Consensus 489 y~d-~V~~~aRRfFhhLLR~~------rfekAFlLAvdi~~~DLFmdlh~~A~~~g 537 (545)
T PF11768_consen 489 YRD-PVSDLARRFFHHLLRYQ------RFEKAFLLAVDIGDRDLFMDLHYLAKDKG 537 (545)
T ss_pred HHH-HHHHHHHHHHHHHHHhh------HHHHHHHHHHhccchHHHHHHHHHHHhcc
Confidence 333 23345667777776542 22322222334555555555555555444
No 337
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=41.79 E-value=72 Score=18.64 Aligned_cols=26 Identities=31% Similarity=0.296 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 047934 245 SYNLLIQGLYKCNKLEEAVEYCIEML 270 (344)
Q Consensus 245 tyn~LI~ay~k~g~~~~A~~lf~~M~ 270 (344)
+|..+-..|.+.|+.++|.+.|++..
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~ 28 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKAL 28 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44555555666666666666666544
No 338
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.97 E-value=2.2e+02 Score=26.49 Aligned_cols=28 Identities=7% Similarity=0.205 Sum_probs=18.8
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 047934 254 YKCNKLEEAVEYCIEMLEAGHSPNVTTF 281 (344)
Q Consensus 254 ~k~g~~~~A~~lf~~M~~~gv~pd~~ty 281 (344)
+..+++.+|+++|++.....+.-+..-|
T Consensus 165 a~leqY~~Ai~iyeqva~~s~~n~LLKy 192 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSLDNNLLKY 192 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchHHHh
Confidence 3567788899999988766544444333
No 339
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=40.91 E-value=75 Score=22.48 Aligned_cols=23 Identities=43% Similarity=0.538 Sum_probs=10.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Q 047934 248 LLIQGLYKCNKLEEAVEYCIEML 270 (344)
Q Consensus 248 ~LI~ay~k~g~~~~A~~lf~~M~ 270 (344)
.+|.+|...|++++|.+.+.++.
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 34444445555555544444443
No 340
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=40.54 E-value=1.4e+02 Score=27.18 Aligned_cols=56 Identities=11% Similarity=0.176 Sum_probs=26.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 047934 214 VVDGFCKAQKFDDAKRIFRKMQSN-----GIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEM 269 (344)
Q Consensus 214 LI~ay~k~g~~e~A~~vf~~M~~~-----gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M 269 (344)
|-..|.+.|++++|.++|+.+... -..+...+...+..++.+.|+.++.+.+.-+|
T Consensus 184 ~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 184 MAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 334455556666666666555211 12222333344445555555555544444333
No 341
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=40.51 E-value=2.6e+02 Score=28.66 Aligned_cols=118 Identities=15% Similarity=0.143 Sum_probs=78.3
Q ss_pred HcCCHHH-HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 047934 185 KDGLIQE-AMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAV 263 (344)
Q Consensus 185 k~g~~~~-A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~ 263 (344)
..|+.-. ..++|..++...-.|+.+..-+.| +...|+++.+.+.+...... +.-...+-.+++....+.|++++|.
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHH
Confidence 3455444 455677776665667766665555 36788999999888765432 3335567888899999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 047934 264 EYCIEMLEAGHSPNVTTFVGLVDGLCRERGVEKAQSVIATLKE 306 (344)
Q Consensus 264 ~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~~e~a~~l~~~M~~ 306 (344)
.+-+-|....++-.++.-.+.. ..-..|-++++...++.+..
T Consensus 378 s~a~~~l~~eie~~ei~~iaa~-sa~~l~~~d~~~~~wk~~~~ 419 (831)
T PRK15180 378 STAEMMLSNEIEDEEVLTVAAG-SADALQLFDKSYHYWKRVLL 419 (831)
T ss_pred HHHHHHhccccCChhheeeecc-cHHHHhHHHHHHHHHHHHhc
Confidence 9998888776653222211222 22345777888877777654
No 342
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=40.24 E-value=4.5e+02 Score=27.40 Aligned_cols=151 Identities=13% Similarity=0.132 Sum_probs=92.0
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHH--------HHHHHHHHcCCHHHHHHHHHHHHHc--C--CCCCHHHHHHH-HHHHHH
Q 047934 154 SEPPQEADEIFKKMKETGLIPNAV--------AMLDGLCKDGLIQEAMKLFGLMREK--G--TIPEVVIYTAV-VDGFCK 220 (344)
Q Consensus 154 sg~~~~A~~lf~~M~~~gi~p~~~--------tli~~~~k~g~~~~A~~lf~~M~~~--g--~~pd~~tyn~L-I~ay~k 220 (344)
..+++.|+..+.+....--.++.. .++..|.+.+... |+...+...+. + ..+=...|.-+ +.-+..
T Consensus 73 T~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~ 151 (608)
T PF10345_consen 73 TENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQ 151 (608)
T ss_pred cCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHh
Confidence 567899999988654322223332 3566666666555 88888776543 2 22223333333 333333
Q ss_pred cCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHcCC---------CCCHHHHHHHHH
Q 047934 221 AQKFDDAKRIFRKMQSNG---IAPNAFSYNLLIQGLYK--CNKLEEAVEYCIEMLEAGH---------SPNVTTFVGLVD 286 (344)
Q Consensus 221 ~g~~e~A~~vf~~M~~~g---i~pd~~tyn~LI~ay~k--~g~~~~A~~lf~~M~~~gv---------~pd~~ty~~lL~ 286 (344)
.++...|.+.++.+...- ..+-+.++-.++.+... .+..+++.+..+++..... .|-..+|..+++
T Consensus 152 ~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~ 231 (608)
T PF10345_consen 152 HKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLD 231 (608)
T ss_pred cccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHH
Confidence 479999999998886532 34445566666666654 4556778777777744222 346677888888
Q ss_pred HHH--HcCCHHHHHHHHHHHH
Q 047934 287 GLC--RERGVEKAQSVIATLK 305 (344)
Q Consensus 287 a~~--~~G~~e~a~~l~~~M~ 305 (344)
.|+ ..|+++.+.+.+.++.
T Consensus 232 l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 232 LCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHcCCHHHHHHHHHHHH
Confidence 877 4677666666655543
No 343
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=40.05 E-value=2.2e+02 Score=31.54 Aligned_cols=102 Identities=14% Similarity=0.148 Sum_probs=66.1
Q ss_pred CCCCCHHHH--------HHHHHHHHHcCCH----------------------HHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 047934 203 GTIPEVVIY--------TAVVDGFCKAQKF----------------------DDAKRIFRKMQSNGIAPNAFSYNLLIQG 252 (344)
Q Consensus 203 g~~pd~~ty--------n~LI~ay~k~g~~----------------------e~A~~vf~~M~~~gi~pd~~tyn~LI~a 252 (344)
.-.||.+.. ++||+|+++.|.. +...+.|.++.+.=-.-|..+|..-..-
T Consensus 1161 D~r~da~klk~~me~qk~tli~AL~kKg~a~ak~e~l~g~~e~daeee~s~ld~~~e~y~el~kw~d~~dsK~~~~a~~h 1240 (1304)
T KOG1114|consen 1161 DTRPDAVKLKKKMEKQKDTLIDALVKKGEAFAKYEALKGHKEQDAEEELSKLDSYNENYQELLKWLDASDSKVWQIAKKH 1240 (1304)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhcccccccchhhhhhhhhHHHHHHHHHHHhhcCCchheehhHHH
Confidence 455665554 7899998877642 2233444444432222366677777777
Q ss_pred HHHcCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 047934 253 LYKCNKLEEAVEYCIEMLE-AGHSPNVTTFVGLVDGLCRERGVEKAQSVIATLK 305 (344)
Q Consensus 253 y~k~g~~~~A~~lf~~M~~-~gv~pd~~ty~~lL~a~~~~G~~e~a~~l~~~M~ 305 (344)
+...|++..|++++.++.+ .|-.++...|..++..|...|- .....+++.+.
T Consensus 1241 a~~~~~yGr~lK~l~kliee~~es~t~~~~~~~~el~~~Lgw-~H~~t~~~~~~ 1293 (1304)
T KOG1114|consen 1241 AKALGQYGRALKALLKLIEENGESATKDVAVLLAELLENLGW-NHLATFVKNWM 1293 (1304)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhCc-hHhHHHHhhhe
Confidence 7788999999999998876 5667788888877777777663 33334444433
No 344
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=39.77 E-value=59 Score=30.91 Aligned_cols=45 Identities=11% Similarity=0.139 Sum_probs=24.5
Q ss_pred CCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHCCCcccHHHHHH
Q 047934 274 HSPNVTT-FVGLVDGLCRERGVEKAQSVIATLKEKGFLVNDKAVRE 318 (344)
Q Consensus 274 v~pd~~t-y~~lL~a~~~~G~~e~a~~l~~~M~~~Gi~p~~~~~~~ 318 (344)
+.||..+ |+..|..-.+.||+++|+.+++|.++.|+.--..+|-.
T Consensus 252 v~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik 297 (303)
T PRK10564 252 MLNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFIS 297 (303)
T ss_pred cCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 3344433 34556666666666666666666666665544444433
No 345
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=39.51 E-value=48 Score=23.50 Aligned_cols=43 Identities=16% Similarity=0.295 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHCCCCCCH---HHHHHHHHHcCCHHHHHHHHHHHHH
Q 047934 157 PQEADEIFKKMKETGLIPNA---VAMLDGLCKDGLIQEAMKLFGLMRE 201 (344)
Q Consensus 157 ~~~A~~lf~~M~~~gi~p~~---~tli~~~~k~g~~~~A~~lf~~M~~ 201 (344)
++++.++.+.+.... -|+ -.+|.||.+.|++++|.++.+.+.+
T Consensus 6 ~~~~~~~~~~lR~~R--HD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 6 LEELEELIDSLRAQR--HDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 556666676665421 133 2689999999999999999998865
No 346
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=39.19 E-value=5.2e+02 Score=27.81 Aligned_cols=34 Identities=12% Similarity=0.025 Sum_probs=20.3
Q ss_pred HcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 047934 201 EKGTIPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQS 236 (344)
Q Consensus 201 ~~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~ 236 (344)
+.|+..+......|+... .|++..+..+++++..
T Consensus 193 kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia 226 (709)
T PRK08691 193 SEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIA 226 (709)
T ss_pred HcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHH
Confidence 446666666665555543 4667777776666544
No 347
>cd07229 Pat_TGL3_like Triacylglycerol lipase 3. Triacylglycerol lipase 3 (TGL3) are responsible for all the TAG lipase activity of the lipid particle. Triacylglycerol (TAG) lipases are also necessary for the mobilization of TAG stored in lipid particles. TGL3 contains the consensus sequence motif GXSXG, which is found in lipolytic enzymes. This family includes Tgl3p from Saccharomyces cerevisiae.
Probab=38.58 E-value=88 Score=30.98 Aligned_cols=129 Identities=14% Similarity=0.184 Sum_probs=74.8
Q ss_pred HHHHHHHHCCCCCCHH------HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH--H--HHHHcCCHHHHHHHH
Q 047934 162 EIFKKMKETGLIPNAV------AMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVV--D--GFCKAQKFDDAKRIF 231 (344)
Q Consensus 162 ~lf~~M~~~gi~p~~~------tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI--~--ay~k~g~~e~A~~vf 231 (344)
-+++.+.+.|+.|+.. +++.++...+..++..+++... . .+...+...- . ++...+..+.....+
T Consensus 100 Gv~kaL~e~gl~p~~i~GtS~Gaivaa~~a~~~~~e~~~~l~~~---~--~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l 174 (391)
T cd07229 100 GVVKALWLRGLLPRIITGTATGALIAALVGVHTDEELLRFLDGD---G--IDLSAFNRLRGKKSLGYSGYGWLGTLGRRI 174 (391)
T ss_pred HHHHHHHHcCCCCceEEEecHHHHHHHHHHcCCHHHHHHHHhcc---c--hhhhhhhhhccccccccccccccchHHHHH
Confidence 5677788889888653 6888888888777777777532 0 1111111100 0 111112222334444
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----------------HHcCCCCCHHHHHHHHHHHHHcCCHH
Q 047934 232 RKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEM----------------LEAGHSPNVTTFVGLVDGLCRERGVE 295 (344)
Q Consensus 232 ~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M----------------~~~gv~pd~~ty~~lL~a~~~~G~~e 295 (344)
..+.+.|.-.|...+--.+..+...-.++||.+.-.+. ...--.||+..|.++...|+.-|-+.
T Consensus 175 ~r~l~~G~l~D~~~l~~~lr~~lgd~TFeEAy~rTgriLnItv~~~~~~~~p~LLNylTaPnVlIwsAv~aS~a~p~~~~ 254 (391)
T cd07229 175 QRLLREGYFLDVKVLEEFVRANLGDLTFEEAYARTGRVLNITVAPSAVSGSPNLLNYLTAPNVLIWSAALASNASSAALY 254 (391)
T ss_pred HHHHcCCCcccHHHHHHHHHHHcCCCcHHHHHHhhCCEEEEEEECCCCCCCCeeeecCCCCCchHHHHHHHHcCCccccC
Confidence 55556676677777777777766666666665332111 11123589999999999988777554
No 348
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=37.92 E-value=1.8e+02 Score=22.04 Aligned_cols=58 Identities=9% Similarity=0.164 Sum_probs=26.2
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 047934 161 DEIFKKMKETGLIPNAVAMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQK 223 (344)
Q Consensus 161 ~~lf~~M~~~gi~p~~~tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~ 223 (344)
..|++.+.++|+. +..-.-..-+...+.+.|.++++.+..+| ..+|.++.+++-..|.
T Consensus 19 ~~v~~~L~~~~Vl-t~~~~e~I~~~~tr~~q~~~LLd~L~~RG----~~AF~~F~~aL~~~~~ 76 (84)
T cd08326 19 KYLWDHLLSRGVF-TPDMIEEIQAAGSRRDQARQLLIDLETRG----KQAFPAFLSALRETGQ 76 (84)
T ss_pred HHHHHHHHhcCCC-CHHHHHHHHcCCCHHHHHHHHHHHHHhcC----HHHHHHHHHHHHhcCc
Confidence 3455555555544 22211111223344555555555555552 3445555555544443
No 349
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=37.85 E-value=1.2e+02 Score=29.30 Aligned_cols=70 Identities=11% Similarity=0.106 Sum_probs=47.7
Q ss_pred HHHHHHHHHHcCCHH---HHHHHHHHHHHCCCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 047934 211 YTAVVDGFCKAQKFD---DAKRIFRKMQSNGIAPNAFSY-NLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTFV 282 (344)
Q Consensus 211 yn~LI~ay~k~g~~e---~A~~vf~~M~~~gi~pd~~ty-n~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty~ 282 (344)
-..+++.|.+.++.+ +|.-+++..... .|....+ -.+|..|...|..+.|.++|..+.-+.++-|...|.
T Consensus 183 ~~~Ll~~~~~~~~~~~l~~Ai~lLE~~l~~--s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L~iK~IQ~DTL~h~ 256 (365)
T PF09797_consen 183 AHSLLDLYSKTKDSEYLLQAIALLEHALKK--SPHNYQLKLLLVRLYSLLGAGSLALEHYESLDIKNIQLDTLGHL 256 (365)
T ss_pred HHHHHHHhhccCCHHHHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHhcChHHHHHHHhHHH
Confidence 356777776666644 566666666554 2333333 468888899999999999999887776666665554
No 350
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=37.70 E-value=2.1e+02 Score=22.91 Aligned_cols=153 Identities=21% Similarity=0.108 Sum_probs=107.5
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCH-HH-HHH-HHHHcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHcCCHHHHH
Q 047934 154 SEPPQEADEIFKKMKETGLIPNA-VA-MLD-GLCKDGLIQEAMKLFGLMREKGT--IPEVVIYTAVVDGFCKAQKFDDAK 228 (344)
Q Consensus 154 sg~~~~A~~lf~~M~~~gi~p~~-~t-li~-~~~k~g~~~~A~~lf~~M~~~g~--~pd~~tyn~LI~ay~k~g~~e~A~ 228 (344)
.+..+.|.+++.........+.. .. ... .+...|+.+.|...|.......- ......+......+...++.+.+.
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 187 (291)
T COG0457 108 LGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEAL 187 (291)
T ss_pred HhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHH
Confidence 44577888888887775544322 22 333 68899999999999999855221 134455555666678889999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 047934 229 RIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRERGVEKAQSVIATLKEK 307 (344)
Q Consensus 229 ~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~~e~a~~l~~~M~~~ 307 (344)
..+..............+..+-..+...+..+.|...+.......-. ....+..+...+...+..+++...+....+.
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 188 ELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999887632224677888888899999999999999988775322 2344444444445677788888888877654
No 351
>PRK09857 putative transposase; Provisional
Probab=37.68 E-value=2.8e+02 Score=26.10 Aligned_cols=18 Identities=22% Similarity=0.290 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHCCCccc
Q 047934 295 EKAQSVIATLKEKGFLVN 312 (344)
Q Consensus 295 e~a~~l~~~M~~~Gi~p~ 312 (344)
+++.++...|...|+..+
T Consensus 257 e~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 257 SKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHHHHHHcCCCHH
Confidence 445555566666665544
No 352
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=37.53 E-value=1.6e+02 Score=25.96 Aligned_cols=115 Identities=17% Similarity=0.131 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHHcCCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHC-----CCCCCH-HHHH---HHHHHHHH-
Q 047934 189 IQEAMKLFGLMREKGTIPEVVI---YTAVVDGFCKAQKFDDAKRIFRKMQSN-----GIAPNA-FSYN---LLIQGLYK- 255 (344)
Q Consensus 189 ~~~A~~lf~~M~~~g~~pd~~t---yn~LI~ay~k~g~~e~A~~vf~~M~~~-----gi~pd~-~tyn---~LI~ay~k- 255 (344)
+++|.+.++.-.... +.|... |...|.-++......++.+++++-..+ .+.|+. .++. ..+..++.
T Consensus 7 FE~ark~aea~y~~n-P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l 85 (186)
T PF06552_consen 7 FEHARKKAEAAYAKN-PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFL 85 (186)
T ss_dssp HHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhh
Confidence 556666665533221 223332 344455566667777787777776442 456664 2333 34444444
Q ss_pred cCCHHHHHHHHHHHHH-----cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCc
Q 047934 256 CNKLEEAVEYCIEMLE-----AGHSPNVTTFVGLVDGLCRERGVEKAQSVIATLKEKGFL 310 (344)
Q Consensus 256 ~g~~~~A~~lf~~M~~-----~gv~pd~~ty~~lL~a~~~~G~~e~a~~l~~~M~~~Gi~ 310 (344)
..+..+|.++|++-.+ ....|+..+|..-|..+ ++|-+++.++.+.++.
T Consensus 86 ~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~------~kap~lh~e~~~~~~~ 139 (186)
T PF06552_consen 86 TPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMA------AKAPELHMEIHKQGLG 139 (186)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHH------HTHHHHHHHHHHSSS-
T ss_pred cCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH------HhhHHHHHHHHHHHhh
Confidence 4566788898988654 35689999998888776 4688888888887654
No 353
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=37.50 E-value=1.9e+02 Score=29.70 Aligned_cols=121 Identities=10% Similarity=0.068 Sum_probs=78.4
Q ss_pred CCCCCCCCCHHHH-HHHHHHHHHCCCCCCHHHH-HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH
Q 047934 148 NRNEPISEPPQEA-DEIFKKMKETGLIPNAVAM-LDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFD 225 (344)
Q Consensus 148 ~~~~~~sg~~~~A-~~lf~~M~~~gi~p~~~tl-i~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e 225 (344)
+......|++..| .++|+.+....--|+..-| -......|++|.+++......+. +.....+.-.+|+..-+.|+++
T Consensus 296 i~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~ 374 (831)
T PRK15180 296 ITKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWR 374 (831)
T ss_pred HHHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHH
Confidence 3344556776555 5677777765555555432 34456789999999888765432 4456678889999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 047934 226 DAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEML 270 (344)
Q Consensus 226 ~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~ 270 (344)
+|..+-..|....++ |........-..-..|.+|++...+.++.
T Consensus 375 ~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~ 418 (831)
T PRK15180 375 EALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVL 418 (831)
T ss_pred HHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHh
Confidence 999999999887665 32222222222223456666666666553
No 354
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=37.23 E-value=4.1e+02 Score=25.97 Aligned_cols=78 Identities=18% Similarity=0.181 Sum_probs=50.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHC---CCCCCHHHHH--HHHHHHHHcCCHHHHHHHHHHHHH-----cCCCCCHHH-
Q 047934 212 TAVVDGFCKAQKFDDAKRIFRKMQSN---GIAPNAFSYN--LLIQGLYKCNKLEEAVEYCIEMLE-----AGHSPNVTT- 280 (344)
Q Consensus 212 n~LI~ay~k~g~~e~A~~vf~~M~~~---gi~pd~~tyn--~LI~ay~k~g~~~~A~~lf~~M~~-----~gv~pd~~t- 280 (344)
-.++...-.+++.++|.++++++.+. --+||.+.|. .+..++...|+.+++.+++++.+. .++.+++.+
T Consensus 79 ei~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~ 158 (380)
T KOG2908|consen 79 EILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSS 158 (380)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhh
Confidence 34444455666788888888888663 2356666664 455556667888888888888776 577775443
Q ss_pred HHHHHHHHH
Q 047934 281 FVGLVDGLC 289 (344)
Q Consensus 281 y~~lL~a~~ 289 (344)
|..+-+-|.
T Consensus 159 fY~lssqYy 167 (380)
T KOG2908|consen 159 FYSLSSQYY 167 (380)
T ss_pred HHHHHHHHH
Confidence 444444443
No 355
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=37.01 E-value=73 Score=18.27 Aligned_cols=22 Identities=9% Similarity=0.039 Sum_probs=12.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHH
Q 047934 285 VDGLCRERGVEKAQSVIATLKE 306 (344)
Q Consensus 285 L~a~~~~G~~e~a~~l~~~M~~ 306 (344)
-.++.+.|+.++|.++|+++.+
T Consensus 7 a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 7 ARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHH
Confidence 3444556666666666666554
No 356
>PRK09857 putative transposase; Provisional
Probab=36.86 E-value=2.6e+02 Score=26.36 Aligned_cols=66 Identities=11% Similarity=0.051 Sum_probs=45.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 047934 211 YTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPN 277 (344)
Q Consensus 211 yn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd 277 (344)
+.+++.-....++.++..++++.+.+. +..-.....++..-+-+.|.-+++.++-.+|...|+..+
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 556666666778877788888777665 222333344566666667777788888999999888765
No 357
>PF10155 DUF2363: Uncharacterized conserved protein (DUF2363); InterPro: IPR019312 This entry represents a region of 120 amino acids in proteins conserved from plants to humans. Their function is not known.
Probab=36.82 E-value=2.4e+02 Score=23.19 Aligned_cols=47 Identities=23% Similarity=0.277 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 047934 157 PQEADEIFKKMKETGLIPNAVAMLDGLCKDGLIQEAMKLFGLMREKGTIP 206 (344)
Q Consensus 157 ~~~A~~lf~~M~~~gi~p~~~tli~~~~k~g~~~~A~~lf~~M~~~g~~p 206 (344)
+.-|.+++......+ +...+++.+....---.++++...+....-.|
T Consensus 5 p~IA~~~l~~l~~s~---~~~~yld~lv~~~~sl~s~EvVn~L~~~~~~p 51 (126)
T PF10155_consen 5 PNIAIEILVKLINSP---NFKEYLDVLVSMDMSLHSMEVVNRLTTSFSLP 51 (126)
T ss_pred HHHHHHHHHHHcCCc---hHHHHHHHHHcCCCchhHHHHHHHHHcCCCCc
Confidence 455666665554433 34556666666666666677766666554333
No 358
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=36.82 E-value=3.3e+02 Score=26.57 Aligned_cols=77 Identities=23% Similarity=0.339 Sum_probs=55.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHc---CCCCCHHHH--HHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCCHH-HHH
Q 047934 179 MLDGLCKDGLIQEAMKLFGLMREK---GTIPEVVIY--TAVVDGFCKAQKFDDAKRIFRKMQS-----NGIAPNAF-SYN 247 (344)
Q Consensus 179 li~~~~k~g~~~~A~~lf~~M~~~---g~~pd~~ty--n~LI~ay~k~g~~e~A~~vf~~M~~-----~gi~pd~~-tyn 247 (344)
++...-+.++.++|+++.+++.+. --.|+.+.| +.....+...|+..++++++++.+. .|+.+++. .|.
T Consensus 81 ~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY 160 (380)
T KOG2908|consen 81 LLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFY 160 (380)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHH
Confidence 455555667899999999999754 345677766 5566667788999999999999887 68888665 355
Q ss_pred HHHHHHHH
Q 047934 248 LLIQGLYK 255 (344)
Q Consensus 248 ~LI~ay~k 255 (344)
.+=.-|.+
T Consensus 161 ~lssqYyk 168 (380)
T KOG2908|consen 161 SLSSQYYK 168 (380)
T ss_pred HHHHHHHH
Confidence 55555554
No 359
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=36.62 E-value=79 Score=24.13 Aligned_cols=26 Identities=19% Similarity=0.405 Sum_probs=18.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC
Q 047934 178 AMLDGLCKDGLIQEAMKLFGLMREKG 203 (344)
Q Consensus 178 tli~~~~k~g~~~~A~~lf~~M~~~g 203 (344)
|+++-+.++.-.++|+++.+.|.++|
T Consensus 36 tV~D~L~rCdT~EEAlEii~yleKrG 61 (98)
T COG4003 36 TVIDFLRRCDTEEEALEIINYLEKRG 61 (98)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 56666667777777777777777665
No 360
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=36.27 E-value=2e+02 Score=22.04 Aligned_cols=54 Identities=11% Similarity=0.273 Sum_probs=23.2
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 047934 162 EIFKKMKETGLIPNAVAMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCK 220 (344)
Q Consensus 162 ~lf~~M~~~gi~p~~~tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k 220 (344)
.|++.+.++|+. +..-.-...+..-..+.+.++++.+..+| ..+|.++++++-.
T Consensus 24 ~v~~~L~~~gvl-t~~~~~~I~~~~t~~~k~~~Lld~L~~RG----~~AF~~F~~aL~~ 77 (90)
T cd08332 24 ELLIHLLQKDIL-TDSMAESIMAKPTSFSQNVALLNLLPKRG----PRAFSAFCEALRE 77 (90)
T ss_pred HHHHHHHHcCCC-CHHHHHHHHcCCCcHHHHHHHHHHHHHhC----hhHHHHHHHHHHh
Confidence 345555555544 22211111223334455555555555542 2444455554443
No 361
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=36.25 E-value=3.9e+02 Score=25.43 Aligned_cols=89 Identities=8% Similarity=0.113 Sum_probs=58.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 047934 211 YTAVVDGFCKAQKFDDAKRIFRKMQSN--GIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGL 288 (344)
Q Consensus 211 yn~LI~ay~k~g~~e~A~~vf~~M~~~--gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~ 288 (344)
...=|.+++..+++.++....-+--+. .+.|.+. -.=|--|.|.+....+.++-..-...--.-+...|.++..-|
T Consensus 86 cvvGIQALAEmnrWreVLsWvlqyYq~pEklPpkIl--eLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELy 163 (309)
T PF07163_consen 86 CVVGIQALAEMNRWREVLSWVLQYYQVPEKLPPKIL--ELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELY 163 (309)
T ss_pred hhhhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHH--HHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHH
Confidence 345588899999999887654433332 3344433 334455889999999998887766542222344477776666
Q ss_pred HH-----cCCHHHHHHHH
Q 047934 289 CR-----ERGVEKAQSVI 301 (344)
Q Consensus 289 ~~-----~G~~e~a~~l~ 301 (344)
.. .|.+++|+++.
T Consensus 164 Ll~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 164 LLHVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHHHhccccHHHHHHHH
Confidence 54 79999998887
No 362
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=36.14 E-value=1.6e+02 Score=25.26 Aligned_cols=58 Identities=12% Similarity=0.028 Sum_probs=33.0
Q ss_pred HHHCCCCCCHH--HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 047934 167 MKETGLIPNAV--AMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKF 224 (344)
Q Consensus 167 M~~~gi~p~~~--tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~ 224 (344)
+.+.|+..+.. +++..+......-.|.++++.+.+.+...+..|.=--|+.+...|-+
T Consensus 17 L~~~GlR~T~qR~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 17 CAQRNVRLTPQRLEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HHHcCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 44556654433 56666665555556777777776666555555444445555555544
No 363
>COG5210 GTPase-activating protein [General function prediction only]
Probab=36.03 E-value=4.1e+02 Score=26.96 Aligned_cols=58 Identities=12% Similarity=0.147 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 047934 226 DAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTFVG 283 (344)
Q Consensus 226 ~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty~~ 283 (344)
..-+++..|.+.|+....+++..++..+++.-.++.|+++++.+...|..--...+.+
T Consensus 360 ~~p~l~~hl~~~~~~~~~~~~~w~l~lF~~~~p~e~~lriwD~lf~eg~~~l~~~~~~ 417 (496)
T COG5210 360 LDPELYEHLLREGVVLLMFAFRWFLTLFVREFPLEYALRIWDCLFLEGSSMLFQLALA 417 (496)
T ss_pred HHHHHHHHHHHcCCchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 3456778888888888888888888888888888888888888777665433333333
No 364
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=35.73 E-value=2.3e+02 Score=23.69 Aligned_cols=45 Identities=16% Similarity=0.249 Sum_probs=25.3
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 047934 192 AMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQS 236 (344)
Q Consensus 192 A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~ 236 (344)
..+.++.+..-.+.|+..+..+-+++|-+..++..|.++|+.++.
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 334444444445556666666666666666666666666665544
No 365
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=35.43 E-value=5.9e+02 Score=27.83 Aligned_cols=46 Identities=9% Similarity=0.007 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 047934 189 IQEAMKLFGLMR-EKGTIPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQS 236 (344)
Q Consensus 189 ~~~A~~lf~~M~-~~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~ 236 (344)
.++..+.++... +.|+..+......+... ..|++.+|+.++++...
T Consensus 180 ~eeIv~~L~~Il~~EgI~id~eAL~lIA~~--A~GsmRdALsLLdQAia 226 (830)
T PRK07003 180 AGHIVSHLERILGEERIAFEPQALRLLARA--AQGSMRDALSLTDQAIA 226 (830)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHH
Confidence 345555555443 44666666666555553 46777888877766543
No 366
>KOG0159 consensus Cytochrome P450 CYP11/CYP12/CYP24/CYP27 subfamilies [Secondary metabolites biosynthesis, transport and catabolism]
Probab=35.09 E-value=5.2e+02 Score=26.62 Aligned_cols=83 Identities=14% Similarity=0.090 Sum_probs=49.3
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---C-CCCCH--
Q 047934 205 IPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEA---G-HSPNV-- 278 (344)
Q Consensus 205 ~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~---g-v~pd~-- 278 (344)
..+...+..|.. +.-+.++|....-+|...|+..+..|...++..+++ +.+.=.++.++.... + -.+..
T Consensus 298 ~~~~~l~~~L~~---~~l~~k~~~~~~~dll~aGvDTTs~tl~~~Ly~Lar--nP~~Q~~L~~Ei~~~~p~~~~~~~~~~ 372 (519)
T KOG0159|consen 298 EYTGSLLELLLR---KELSRKDAKANVMDLLAAGVDTTSNTLLWALYELAR--NPEVQQRLREEILAVLPSGNSELTQKA 372 (519)
T ss_pred chhHHHHHHHHH---ccCCHHHHHHHHHHHHHHhccchHHHHHHHHHHHhc--ChHHHHHHHHHHHhhCCCcccccchHH
Confidence 444455454443 445678888888888888887777777766655554 455555556666543 1 11222
Q ss_pred HHHHHHHHHHHHcC
Q 047934 279 TTFVGLVDGLCRER 292 (344)
Q Consensus 279 ~ty~~lL~a~~~~G 292 (344)
.+-.-+|+||.+.+
T Consensus 373 l~~~pyLrAcIKEt 386 (519)
T KOG0159|consen 373 LTNMPYLRACIKET 386 (519)
T ss_pred HhhCHHHHHHHHhh
Confidence 22334677887644
No 367
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=34.99 E-value=5.1e+02 Score=26.52 Aligned_cols=20 Identities=15% Similarity=0.278 Sum_probs=11.1
Q ss_pred CCHHHHHHHHHHHHHCCCcc
Q 047934 292 RGVEKAQSVIATLKEKGFLV 311 (344)
Q Consensus 292 G~~e~a~~l~~~M~~~Gi~p 311 (344)
++.+.+..++++|...|..+
T Consensus 259 ~d~~~~l~~~~~l~~~g~~~ 278 (509)
T PRK14958 259 KAGDRLLGCVTRLVEQGVDF 278 (509)
T ss_pred CCHHHHHHHHHHHHHcCCCH
Confidence 55555555555555555554
No 368
>PRK13342 recombination factor protein RarA; Reviewed
Probab=34.96 E-value=4.5e+02 Score=25.86 Aligned_cols=44 Identities=23% Similarity=0.388 Sum_probs=24.8
Q ss_pred CHHHHHHHHHHHHHC---CC-CCCHH--HHHHHHHHcCCHHHHHHHHHHHH
Q 047934 156 PPQEADEIFKKMKET---GL-IPNAV--AMLDGLCKDGLIQEAMKLFGLMR 200 (344)
Q Consensus 156 ~~~~A~~lf~~M~~~---gi-~p~~~--tli~~~~k~g~~~~A~~lf~~M~ 200 (344)
..++...++...... ++ ..+.. ..|..++ .|+...++.+++...
T Consensus 152 s~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s-~Gd~R~aln~Le~~~ 201 (413)
T PRK13342 152 SEEDIEQLLKRALEDKERGLVELDDEALDALARLA-NGDARRALNLLELAA 201 (413)
T ss_pred CHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 456777777765432 33 22222 2344443 678888877777654
No 369
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=34.42 E-value=3.4e+02 Score=24.42 Aligned_cols=55 Identities=9% Similarity=0.003 Sum_probs=29.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC--------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 047934 248 LLIQGLYKCNKLEEAVEYCIEMLEAG--------------HSPNVTTFVGLVDGLCRERGVEKAQSVIA 302 (344)
Q Consensus 248 ~LI~ay~k~g~~~~A~~lf~~M~~~g--------------v~pd~~ty~~lL~a~~~~G~~e~a~~l~~ 302 (344)
+++-.|.+.-+|.++.++++.|.+.. ..+-....|.....|.+.|.+|-|..++.
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLr 205 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLR 205 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHh
Confidence 34444555555555555555554321 12333445556666666666666666665
No 370
>PRK13342 recombination factor protein RarA; Reviewed
Probab=34.20 E-value=4.7e+02 Score=25.78 Aligned_cols=122 Identities=16% Similarity=0.041 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHHc---CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC------------------CCCHHHH
Q 047934 189 IQEAMKLFGLMREK---GT-IPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGI------------------APNAFSY 246 (344)
Q Consensus 189 ~~~A~~lf~~M~~~---g~-~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi------------------~pd~~ty 246 (344)
.++...++...... |+ ..+......++..+ .|+...++.+++.+...+. ..+...+
T Consensus 153 ~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~~~It~~~v~~~~~~~~~~~d~~~~~~ 230 (413)
T PRK13342 153 EEDIEQLLKRALEDKERGLVELDDEALDALARLA--NGDARRALNLLELAALGVDSITLELLEEALQKRAARYDKDGDEH 230 (413)
T ss_pred HHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCCCHHHHHHHHhhhhhccCCCccHH
Confidence 45555556554322 43 45555555555543 5777777766665532111 1111234
Q ss_pred HHHHHHHHH---cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHCCCccc
Q 047934 247 NLLIQGLYK---CNKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRERG-----VEKAQSVIATLKEKGFLVN 312 (344)
Q Consensus 247 n~LI~ay~k---~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~-----~e~a~~l~~~M~~~Gi~p~ 312 (344)
--+++++.+ ..+.+.|+..+..|.+.|..|....--.++.++-..|. +..|...++....-|+.--
T Consensus 231 ~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig~a~~~~~~~~~~~~~~~~~~g~pe~ 304 (413)
T PRK13342 231 YDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIGLADPNALQVAVAAADAVERIGMPEG 304 (413)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHhCCcHH
Confidence 455666665 47899999999999999988887777777777666663 4455666666677787543
No 371
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=34.10 E-value=2.4e+02 Score=22.59 Aligned_cols=77 Identities=19% Similarity=0.227 Sum_probs=58.6
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHH--HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 047934 156 PPQEADEIFKKMKETGLIPNAVAMLDG--LCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRIFRK 233 (344)
Q Consensus 156 ~~~~A~~lf~~M~~~gi~p~~~tli~~--~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~ 233 (344)
..++|.-+-+.+...+-.-..++||+. +...|++++|..+.+.+ .-||...|-+|-. .+.|..+++..-+..
T Consensus 20 cHqEA~tIAdwL~~~~~~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~r 93 (115)
T TIGR02508 20 CHQEANTIADWLHLKGESEEAVQLIRLSSLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNR 93 (115)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHH
Confidence 467888888888877643345667655 45678999999887665 5799999988866 588888888888888
Q ss_pred HHHCC
Q 047934 234 MQSNG 238 (344)
Q Consensus 234 M~~~g 238 (344)
|...|
T Consensus 94 la~sg 98 (115)
T TIGR02508 94 LAASG 98 (115)
T ss_pred HHhCC
Confidence 87775
No 372
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=34.00 E-value=47 Score=20.31 Aligned_cols=22 Identities=36% Similarity=0.357 Sum_probs=12.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHH
Q 047934 242 NAFSYNLLIQGLYKCNKLEEAV 263 (344)
Q Consensus 242 d~~tyn~LI~ay~k~g~~~~A~ 263 (344)
|...|+.|-..|...|++++|+
T Consensus 12 n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhhc
Confidence 4455555555555666555553
No 373
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=33.67 E-value=1.6e+02 Score=24.01 Aligned_cols=24 Identities=13% Similarity=0.332 Sum_probs=11.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCC
Q 047934 215 VDGFCKAQKFDDAKRIFRKMQSNG 238 (344)
Q Consensus 215 I~ay~k~g~~e~A~~vf~~M~~~g 238 (344)
|+-+.+|...++|++|.+.|.++|
T Consensus 68 iD~lrRC~T~EEALEVInylek~G 91 (128)
T PF09868_consen 68 IDYLRRCKTDEEALEVINYLEKRG 91 (128)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhC
Confidence 344445555555555555555444
No 374
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=33.62 E-value=2.3e+02 Score=22.02 Aligned_cols=23 Identities=9% Similarity=0.319 Sum_probs=14.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Q 047934 213 AVVDGFCKAQKFDDAKRIFRKMQ 235 (344)
Q Consensus 213 ~LI~ay~k~g~~e~A~~vf~~M~ 235 (344)
.+|.-|...+++++|.+-+.++.
T Consensus 7 ~~l~ey~~~~D~~ea~~~l~~L~ 29 (113)
T smart00544 7 LIIEEYLSSGDTDEAVHCLLELK 29 (113)
T ss_pred HHHHHHHHcCCHHHHHHHHHHhC
Confidence 45555666666666666666654
No 375
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=33.62 E-value=3e+02 Score=24.45 Aligned_cols=65 Identities=14% Similarity=0.280 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHcCCCCCH--H-----HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 047934 190 QEAMKLFGLMREKGTIPEV--V-----IYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCN 257 (344)
Q Consensus 190 ~~A~~lf~~M~~~g~~pd~--~-----tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g 257 (344)
+-|+.+|+.+.+.--.|.. . .=-..+-.|.+.|.+++|.+++++... .++....-.-+....+..
T Consensus 86 ESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~---d~~~~~~r~kL~~II~~K 157 (200)
T cd00280 86 ESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS---DPESQKLRMKLLMIIREK 157 (200)
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc---CCCchhHHHHHHHHHHcc
Confidence 4577777766655332211 1 112344456677777777777766655 234444444444444443
No 376
>PHA02798 ankyrin-like protein; Provisional
Probab=33.48 E-value=1.9e+02 Score=29.04 Aligned_cols=149 Identities=14% Similarity=0.123 Sum_probs=69.6
Q ss_pred HHHHHHHHCCCCCCHH-----HHHHHHHHc-CCHHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHHcCCHHHHHHHHHH
Q 047934 162 EIFKKMKETGLIPNAV-----AMLDGLCKD-GLIQEAMKLFGLMREKGTIPEVVI--YTAVVDGFCKAQKFDDAKRIFRK 233 (344)
Q Consensus 162 ~lf~~M~~~gi~p~~~-----tli~~~~k~-g~~~~A~~lf~~M~~~g~~pd~~t--yn~LI~ay~k~g~~e~A~~vf~~ 233 (344)
++.+.+.+.|.-++.. |-+..++.. .......++.+.+.+.|..++... -.+.+...+..+.. .-.++.+.
T Consensus 52 ~iv~~Ll~~Gadvn~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~GadiN~~d~~G~TpLh~a~~~~~~-~~~~iv~~ 130 (489)
T PHA02798 52 DIVKLFINLGANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDGETPLYCLLSNGYI-NNLEILLF 130 (489)
T ss_pred HHHHHHHHCCCCCCCCCCCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCCCCCCCCcCcHHHHHHHcCCc-ChHHHHHH
Confidence 4555566667655431 222222221 122334677788888887665432 22333333444332 23455666
Q ss_pred HHHCCCCCCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 047934 234 MQSNGIAPNAFS--YNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTT---FVGLVDGLCRERGVEKAQSVIATLKEKG 308 (344)
Q Consensus 234 M~~~gi~pd~~t--yn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~t---y~~lL~a~~~~G~~e~a~~l~~~M~~~G 308 (344)
+.+.|..++... ..+.+..+++.+.- .-.++.+.+.+.|..++... ....+..+.+.+--..-.++++.+.+.|
T Consensus 131 Ll~~Gadvn~~d~~g~tpL~~a~~~~~~-~~~~vv~~Ll~~gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~G 209 (489)
T PHA02798 131 MIENGADTTLLDKDGFTMLQVYLQSNHH-IDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNG 209 (489)
T ss_pred HHHcCCCccccCCCCCcHHHHHHHcCCc-chHHHHHHHHHhCCCcccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCC
Confidence 667777665432 12334445555540 11233444556676654431 1123333333221111245666667777
Q ss_pred Cccc
Q 047934 309 FLVN 312 (344)
Q Consensus 309 i~p~ 312 (344)
..++
T Consensus 210 a~i~ 213 (489)
T PHA02798 210 FIIN 213 (489)
T ss_pred CCcc
Confidence 6544
No 377
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=33.46 E-value=1.2e+02 Score=25.37 Aligned_cols=32 Identities=22% Similarity=0.231 Sum_probs=14.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH
Q 047934 249 LIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTT 280 (344)
Q Consensus 249 LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~t 280 (344)
+++.+.+.+..-.|.++++++.+.+...+..|
T Consensus 26 vl~~L~~~~~~~sAeei~~~l~~~~p~islaT 57 (145)
T COG0735 26 VLELLLEADGHLSAEELYEELREEGPGISLAT 57 (145)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhH
Confidence 33333344444445555555554444444444
No 378
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=32.94 E-value=1.4e+02 Score=22.52 Aligned_cols=20 Identities=25% Similarity=0.291 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHcCCHHHHHH
Q 047934 245 SYNLLIQGLYKCNKLEEAVE 264 (344)
Q Consensus 245 tyn~LI~ay~k~g~~~~A~~ 264 (344)
+...|+.+|+..|.+.++++
T Consensus 45 ~lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 45 VLGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555554444
No 379
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=32.64 E-value=3.3e+02 Score=25.11 Aligned_cols=75 Identities=16% Similarity=0.088 Sum_probs=56.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHH
Q 047934 177 VAMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQSN--GIAPNAFSYNLLIQG 252 (344)
Q Consensus 177 ~tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~--gi~pd~~tyn~LI~a 252 (344)
...++.+.+.+...+|+....+=.+.. +.|.-+-..|+..||-.|++++|..-++..-.. ...+-..+|..+|.+
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 345788899999999999988766652 346777788999999999999998877766543 233445677777765
No 380
>PF09090 MIF4G_like_2: MIF4G like; InterPro: IPR015174 This entry represents an MIF4G-like domain. MIF4G domains share a common structure but can differ in sequence. This entry is designated "type 2", and is found in nuclear cap-binding proteins and eIF4G. The MIF4G domain is a structural motif with an ARM (Armadillo) repeat-type fold, consisting of a 2-layer alpha/alpha right-handed superhelix. Proteins usually contain two or more structurally similar MIF4G domains connected by unstructured linkers. MIF4G domains are found in several proteins involved in RNA metabolism, including eIF4G (eukaryotic initiation factor 4-gamma), eIF-2b (translation initiation factor), UPF2 (regulator of nonsense transcripts 2), and nuclear cap-binding proteins (CBP80, CBC1, NCBP1), although the sequence identity between them may be low []. The nuclear cap-binding complex (CBC) is a heterodimer. Human CBC consists of a large CBP80 subunit and a small CBP20 subunit, the latter being critical for cap binding. CBP80 contains three MIF4G domains connected with long linkers, while CBP20 has an RNP (ribonucleoprotein)-type domain that associates with domains 2 and 3 of CBP80 []. The complex binds to 5'-cap of eukaryotic RNA polymerase II transcripts, such as mRNA and U snRNA. The binding is important for several mRNA nuclear maturation steps and for nonsense-mediated decay. It is also essential for nuclear export of U snRNAs in metazoans []. Eukaryotic translation initiation factor 4 gamma (eIF4G) plays a critical role in protein expression, and is at the centre of a complex regulatory network. Together with the cap-binding protein eIF4E, it recruits the small ribosomal subunit to the 5'-end of mRNA and promotes the assembly of a functional translation initiation complex, which scans along the mRNA to the translation start codon. The activity of eIF4G in translation initiation could be regulated through intra- and inter-protein interactions involving the ARM repeats []. In eIF4G, the MIF4G domain binds eIF4A, eIF3, RNA and DNA.; GO: 0016070 RNA metabolic process; PDB: 3FEY_A 3FEX_A 1H6K_C 1H2V_C 1H2U_A 1H2T_C 1N54_A 1N52_A.
Probab=32.42 E-value=4e+02 Score=24.42 Aligned_cols=129 Identities=13% Similarity=0.182 Sum_probs=65.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHH--cCC-CCC
Q 047934 207 EVVIYTAVVDGFCKAQKFDDAKRIFRKMQSN----GIAPNAFSYNLLIQGLYKCNK--LEEAVEYCIEMLE--AGH-SPN 277 (344)
Q Consensus 207 d~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~----gi~pd~~tyn~LI~ay~k~g~--~~~A~~lf~~M~~--~gv-~pd 277 (344)
-...-..|+++.-+....++...+++.+... |..++..+-..++.+++..|. +.-+..++++... ..+ ..+
T Consensus 10 ~~~~a~~l~~~ir~k~~~eei~~~l~~i~~~~~~~~~~~~~~~i~v~~q~ll~~GSkS~SH~~~~lery~~~Lk~l~~~~ 89 (253)
T PF09090_consen 10 FHALAQKLLDLIRKKAPPEEISELLEEIEEPAEEHGSDFDKFVIDVFVQCLLHIGSKSFSHVLSALERYKEVLKELEAES 89 (253)
T ss_dssp THHHHHHHHHHHHTT--HHHHHHHHTTS------------HHHHHHHHHHHHHHTTTSHHHHHHHHHHTHHHHHHH-TSS
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHhccccccccccchhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhccCC
Confidence 3333444444444444455555555555432 224556677777777776654 3333333332211 011 334
Q ss_pred HHHHHHHHHHHHH--cCCHHHHHHHHHHHHHCCCcccHHHHHHHHhccC-C---CChHHHHHHh
Q 047934 278 VTTFVGLVDGLCR--ERGVEKAQSVIATLKEKGFLVNDKAVREFLDKKA-P---FSSSVWEAIF 335 (344)
Q Consensus 278 ~~ty~~lL~a~~~--~G~~e~a~~l~~~M~~~Gi~p~~~~~~~Ll~~ya-k---~g~~~W~all 335 (344)
...=..+|.+-.+ ..+...+.-+++.|...|+-....+.+-+++... . ....+|+.+.
T Consensus 90 ~~~q~~il~~v~~~W~~~~q~~~li~dkll~~~ii~~~~Vv~w~f~~~~~~~~~~~~~~wE~l~ 153 (253)
T PF09090_consen 90 EEAQFWILDAVFRFWKNNPQMGFLIIDKLLNYGIISPSAVVNWVFSPENGNQELTRSYVWEILN 153 (253)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTTSS-HHHHHHHHTSGGG-TTTTTSHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCCceehHHHHHHHhcCCCCHHHHHHHHcCccccccchhhchHHHHHH
Confidence 4444556666554 4667788888888988888777777766665544 2 2234577664
No 381
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=32.01 E-value=3.2e+02 Score=23.30 Aligned_cols=79 Identities=11% Similarity=0.154 Sum_probs=50.4
Q ss_pred CHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 047934 207 EVVIYTAVVDGFC---KAQKFDDAKRIFRKMQSNG-IAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTFV 282 (344)
Q Consensus 207 d~~tyn~LI~ay~---k~g~~e~A~~vf~~M~~~g-i~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty~ 282 (344)
...+.+.||+... ...+.++++.+++.|...- -.+...++-..| +...|+|++|..+|++..+.+.. ..|.
T Consensus 6 s~~iv~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~~~~---~p~~ 80 (153)
T TIGR02561 6 SNRLLGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWL--LIARGNYDEAARILRELLSSAGA---PPYG 80 (153)
T ss_pred cHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHH--HHHcCCHHHHHHHHHhhhccCCC---chHH
Confidence 3344455555443 4688999999999997741 112334555444 45899999999999999887532 2444
Q ss_pred HHHHHHHH
Q 047934 283 GLVDGLCR 290 (344)
Q Consensus 283 ~lL~a~~~ 290 (344)
.-|.++|-
T Consensus 81 kAL~A~CL 88 (153)
T TIGR02561 81 KALLALCL 88 (153)
T ss_pred HHHHHHHH
Confidence 44444443
No 382
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=31.86 E-value=3.9e+02 Score=24.23 Aligned_cols=58 Identities=14% Similarity=0.110 Sum_probs=43.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHH----cCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 047934 248 LLIQGLYKCNKLEEAVEYCIEMLE----AGH-SPNVTTFVGLVDGLCRERGVEKAQSVIATLK 305 (344)
Q Consensus 248 ~LI~ay~k~g~~~~A~~lf~~M~~----~gv-~pd~~ty~~lL~a~~~~G~~e~a~~l~~~M~ 305 (344)
-|-.-|.+.|++++|.++|+.+.. .|. .+...+...++.++.+.|+.+....+.-+|.
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 466678899999999999998853 343 4455666677777778999988877766654
No 383
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=31.84 E-value=84 Score=22.67 Aligned_cols=51 Identities=8% Similarity=0.132 Sum_probs=38.2
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 047934 204 TIPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYK 255 (344)
Q Consensus 204 ~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k 255 (344)
+.|+...++-|++.+++..-++++...+++...+|. .+..+|---+..+++
T Consensus 4 v~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 4 VVAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAR 54 (65)
T ss_dssp EE-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 346667788888888888888888888888888875 467777766666666
No 384
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=31.70 E-value=2e+02 Score=26.92 Aligned_cols=105 Identities=8% Similarity=0.055 Sum_probs=65.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-
Q 047934 212 TAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCR- 290 (344)
Q Consensus 212 n~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~- 290 (344)
-.++..+-+...+.+..+.+..|. .+..-...|..+...|++..|++++.+.... ...+..+ .+...
T Consensus 102 L~Il~~~rkr~~l~~ll~~L~~i~------~v~~~~~~l~~ll~~~dy~~Al~li~~~~~~-----l~~l~~~-~c~~~L 169 (291)
T PF10475_consen 102 LEILRLQRKRQNLKKLLEKLEQIK------TVQQTQSRLQELLEEGDYPGALDLIEECQQL-----LEELKGY-SCVRHL 169 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-----HHhcccc-hHHHHH
Confidence 345555666666667777777665 4556667888888999999999999987763 1111111 11111
Q ss_pred cCCHHHHHHHHHHHHHC-----CCcccHHHHHHHHhccCCCCh
Q 047934 291 ERGVEKAQSVIATLKEK-----GFLVNDKAVREFLDKKAPFSS 328 (344)
Q Consensus 291 ~G~~e~a~~l~~~M~~~-----Gi~p~~~~~~~Ll~~yak~g~ 328 (344)
...+++......++.+. -...|...|..++++|.-.|.
T Consensus 170 ~~~L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk 212 (291)
T PF10475_consen 170 SSQLQETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGK 212 (291)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhh
Confidence 12344444444444433 125788899999999987774
No 385
>PLN03025 replication factor C subunit; Provisional
Probab=31.40 E-value=4.5e+02 Score=24.75 Aligned_cols=31 Identities=6% Similarity=-0.114 Sum_probs=17.9
Q ss_pred HcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 047934 201 EKGTIPEVVIYTAVVDGFCKAQKFDDAKRIFRK 233 (344)
Q Consensus 201 ~~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~ 233 (344)
+.|+..+......++.. ..|++..+...++.
T Consensus 173 ~egi~i~~~~l~~i~~~--~~gDlR~aln~Lq~ 203 (319)
T PLN03025 173 AEKVPYVPEGLEAIIFT--ADGDMRQALNNLQA 203 (319)
T ss_pred HcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHH
Confidence 44666666666666553 34666666666653
No 386
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=31.38 E-value=2.6e+02 Score=26.94 Aligned_cols=59 Identities=14% Similarity=0.227 Sum_probs=49.4
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 047934 192 AMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYK 255 (344)
Q Consensus 192 A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k 255 (344)
=.++|+.|+..++.|.-+.|--+.-.++.+=.+.++..+|+.+.. |..-|-.|+..||.
T Consensus 262 D~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s-----D~~rfd~Ll~iCcs 320 (370)
T KOG4567|consen 262 DEELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS-----DPQRFDFLLYICCS 320 (370)
T ss_pred hHHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc-----ChhhhHHHHHHHHH
Confidence 356889999999999999998888888888899999999999987 45557777777774
No 387
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=31.11 E-value=3.2e+02 Score=27.96 Aligned_cols=17 Identities=18% Similarity=0.139 Sum_probs=11.5
Q ss_pred CCHHHHHHHHHHHHHCC
Q 047934 292 RGVEKAQSVIATLKEKG 308 (344)
Q Consensus 292 G~~e~a~~l~~~M~~~G 308 (344)
|.=.++-..|++|++.|
T Consensus 407 ~eR~~~~l~fNe~V~~G 423 (545)
T TIGR01228 407 GERAKLGLAINEMVRSG 423 (545)
T ss_pred cHHHHHHHHHHHHHHcC
Confidence 44455666788888876
No 388
>KOG2058 consensus Ypt/Rab GTPase activating protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.10 E-value=4.1e+02 Score=26.78 Aligned_cols=68 Identities=13% Similarity=0.149 Sum_probs=43.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 047934 179 MLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGL 253 (344)
Q Consensus 179 li~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay 253 (344)
++..+.+...++-+ ..+...|+..+.+|++-+|..+...+-.+.++++|+-+.-.| ..+.+...+..+
T Consensus 292 VL~~llre~lPkl~----~~l~~~~~~~~l~t~~wfLt~f~d~lP~~t~LrIwD~~f~eG---skvlfr~Alai~ 359 (436)
T KOG2058|consen 292 VLRELLREKLPKLS----LHLEGNGVDASLETLPWFLTLFVDILPSETVLRIWDCLFYEG---SKVLFRVALAIL 359 (436)
T ss_pred HHHHHHHHHCHHHH----HhhhhcCCCeeeeehhhhHHHhcccccHHHHHHHHHHHHhcc---cHHHHHHHHHHH
Confidence 55555555444433 444555666777888888888888888888888888887765 444444444443
No 389
>COG5210 GTPase-activating protein [General function prediction only]
Probab=30.63 E-value=5.3e+02 Score=26.16 Aligned_cols=57 Identities=12% Similarity=0.092 Sum_probs=46.7
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 047934 192 AMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNL 248 (344)
Q Consensus 192 A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~ 248 (344)
.-+++..|.+.|+.....++-.++..+.+.-.++.|.++++.+.-.|..--...+.+
T Consensus 361 ~p~l~~hl~~~~~~~~~~~~~w~l~lF~~~~p~e~~lriwD~lf~eg~~~l~~~~~~ 417 (496)
T COG5210 361 DPELYEHLLREGVVLLMFAFRWFLTLFVREFPLEYALRIWDCLFLEGSSMLFQLALA 417 (496)
T ss_pred HHHHHHHHHHcCCchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 345778888999999999999999999999999999999999988765543333333
No 390
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=30.35 E-value=6.2e+02 Score=26.00 Aligned_cols=50 Identities=14% Similarity=0.056 Sum_probs=25.4
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 047934 184 CKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQSN 237 (344)
Q Consensus 184 ~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~ 237 (344)
.+.-..++-.+++.++... + ...+..++++.+.+|-.....-+.+.+...
T Consensus 320 lR~~~~e~l~~l~~~~~~~---~-~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~ 369 (574)
T smart00638 320 LRTLSEEQLEQLWRQLYEK---K-KKARRIFLDAVAQAGTPPALKFIKQWIKNK 369 (574)
T ss_pred HHhCCHHHHHHHHHHHHhC---C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHcC
Confidence 3344455555555555431 1 455566666666666555444444444443
No 391
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=30.21 E-value=6.2e+02 Score=25.95 Aligned_cols=75 Identities=11% Similarity=0.117 Sum_probs=41.7
Q ss_pred HHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC---C----------CCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 047934 200 REKGTIPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNG---I----------APNAFSYNLLIQGLYKCNKLEEAVEYC 266 (344)
Q Consensus 200 ~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~g---i----------~pd~~tyn~LI~ay~k~g~~~~A~~lf 266 (344)
.+.|+..+......++... .|++..|..+++++...| + ..+....-.|++++.. ++.+.+++++
T Consensus 192 ~~egi~~~~~al~~ia~~s--~GslR~al~lLdq~ia~~~~~It~~~V~~~lg~~~~~~i~~ll~al~~-~d~~~~l~~~ 268 (509)
T PRK14958 192 KEENVEFENAALDLLARAA--NGSVRDALSLLDQSIAYGNGKVLIADVKTMLGTIEPLLLFDILEALAA-KAGDRLLGCV 268 (509)
T ss_pred HHcCCCCCHHHHHHHHHHc--CCcHHHHHHHHHHHHhcCCCCcCHHHHHHHHCCCCHHHHHHHHHHHHc-CCHHHHHHHH
Confidence 3456665655555554432 466666666666554332 1 1122233344554443 7777777777
Q ss_pred HHHHHcCCCCC
Q 047934 267 IEMLEAGHSPN 277 (344)
Q Consensus 267 ~~M~~~gv~pd 277 (344)
++|...|..|.
T Consensus 269 ~~l~~~g~~~~ 279 (509)
T PRK14958 269 TRLVEQGVDFS 279 (509)
T ss_pred HHHHHcCCCHH
Confidence 77777776654
No 392
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=29.87 E-value=6.9e+02 Score=26.41 Aligned_cols=33 Identities=9% Similarity=0.032 Sum_probs=16.2
Q ss_pred HcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 047934 201 EKGTIPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQ 235 (344)
Q Consensus 201 ~~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~ 235 (344)
+.|+..+......++.. ..|++..++.++++..
T Consensus 198 ~egi~ie~~AL~~La~~--s~GslR~al~lLdq~i 230 (618)
T PRK14951 198 AENVPAEPQALRLLARA--ARGSMRDALSLTDQAI 230 (618)
T ss_pred HcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHH
Confidence 34555555555444442 3355555555554443
No 393
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=29.75 E-value=88 Score=23.90 Aligned_cols=27 Identities=30% Similarity=0.322 Sum_probs=21.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 047934 283 GLVDGLCRERGVEKAQSVIATLKEKGF 309 (344)
Q Consensus 283 ~lL~a~~~~G~~e~a~~l~~~M~~~Gi 309 (344)
++++.+.++.-.++|.++++.|.+.|-
T Consensus 36 tV~D~L~rCdT~EEAlEii~yleKrGE 62 (98)
T COG4003 36 TVIDFLRRCDTEEEALEIINYLEKRGE 62 (98)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhCC
Confidence 466677777888888888888888873
No 394
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=29.28 E-value=4.2e+02 Score=23.71 Aligned_cols=59 Identities=15% Similarity=0.119 Sum_probs=30.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHH-HHHHcCC--HHHHHHHHHHHHHC
Q 047934 179 MLDGLCKDGLIQEAMKLFGLMREK--GTIPEVVIYTAVVD-GFCKAQK--FDDAKRIFRKMQSN 237 (344)
Q Consensus 179 li~~~~k~g~~~~A~~lf~~M~~~--g~~pd~~tyn~LI~-ay~k~g~--~e~A~~vf~~M~~~ 237 (344)
......+.|++++|..-++.+.+. .++--...|..+.. +|+.++. +-+|.-++.-+...
T Consensus 35 ~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~~ 98 (204)
T COG2178 35 EAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSILKDG 98 (204)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhcC
Confidence 334445667777777777666432 12222344555554 4444443 44565566555443
No 395
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=29.19 E-value=1.1e+02 Score=23.78 Aligned_cols=22 Identities=9% Similarity=0.356 Sum_probs=12.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHH
Q 047934 213 AVVDGFCKAQKFDDAKRIFRKM 234 (344)
Q Consensus 213 ~LI~ay~k~g~~e~A~~vf~~M 234 (344)
.+|.-|...++.++|..-+.++
T Consensus 7 ~~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 7 SILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHhcCCCHHHHHHHHHHh
Confidence 4455566666777776666654
No 396
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=29.08 E-value=96 Score=16.30 Aligned_cols=26 Identities=27% Similarity=0.299 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 047934 245 SYNLLIQGLYKCNKLEEAVEYCIEML 270 (344)
Q Consensus 245 tyn~LI~ay~k~g~~~~A~~lf~~M~ 270 (344)
.|..+-..|...+++++|...|.+..
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~ 28 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKAL 28 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 34445555555666666666655543
No 397
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=28.22 E-value=1.2e+02 Score=22.94 Aligned_cols=20 Identities=5% Similarity=0.152 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHcCCHHHHHH
Q 047934 210 IYTAVVDGFCKAQKFDDAKR 229 (344)
Q Consensus 210 tyn~LI~ay~k~g~~e~A~~ 229 (344)
++..|+.+|+..|+++++++
T Consensus 45 ~lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 45 VLGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555444
No 398
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=28.02 E-value=4.9e+02 Score=24.15 Aligned_cols=156 Identities=13% Similarity=0.135 Sum_probs=96.6
Q ss_pred HHHHcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHc--
Q 047934 182 GLCKDGLIQEAMKLFGLMREKG--TIPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQSN-GIAPNAFSYNLLIQGLYKC-- 256 (344)
Q Consensus 182 ~~~k~g~~~~A~~lf~~M~~~g--~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~-gi~pd~~tyn~LI~ay~k~-- 256 (344)
.-.+.|++++|.+.|+.+.... -+-...+--.++-++-+.+++++|+..+++.... +-.|| .-|-..|.+++.-
T Consensus 43 ~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n-~dY~~YlkgLs~~~~ 121 (254)
T COG4105 43 TELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPN-ADYAYYLKGLSYFFQ 121 (254)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC-hhHHHHHHHHHHhcc
Confidence 3457899999999999998763 2224556666778888999999999999998775 33333 3455555555532
Q ss_pred -----CCHHHHHHHHHHHHH---c----CCCCCHHHH------------HHHHHHHHHcCCHHHHHHHHHHHHHCCCccc
Q 047934 257 -----NKLEEAVEYCIEMLE---A----GHSPNVTTF------------VGLVDGLCRERGVEKAQSVIATLKEKGFLVN 312 (344)
Q Consensus 257 -----g~~~~A~~lf~~M~~---~----gv~pd~~ty------------~~lL~a~~~~G~~e~a~~l~~~M~~~Gi~p~ 312 (344)
.+...+..-|..|.+ . .-.||...- ..+-+-|.+-|.+.-|..-+++|.+. ..-+
T Consensus 122 i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~-y~~t 200 (254)
T COG4105 122 IDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLEN-YPDT 200 (254)
T ss_pred CCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhc-cccc
Confidence 333445555555443 1 234444331 23445567788888888888888877 3222
Q ss_pred ---HHHHHHHHhccCCCChH----HHHHHhcCcc
Q 047934 313 ---DKAVREFLDKKAPFSSS----VWEAIFGKKT 339 (344)
Q Consensus 313 ---~~~~~~Ll~~yak~g~~----~W~all~~~~ 339 (344)
....-.|.+.|-..|.. .-.++|+...
T Consensus 201 ~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~ 234 (254)
T COG4105 201 SAVREALARLEEAYYALGLTDEAKKTAKVLGANY 234 (254)
T ss_pred cchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcC
Confidence 23344445555555543 2555555443
No 399
>COG2405 Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]
Probab=27.32 E-value=1.1e+02 Score=25.84 Aligned_cols=41 Identities=24% Similarity=0.370 Sum_probs=32.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCcccHHHHHHHHhcc
Q 047934 283 GLVDGLCRERGVEKAQSVIATLKEKGFLVNDKAVREFLDKK 323 (344)
Q Consensus 283 ~lL~a~~~~G~~e~a~~l~~~M~~~Gi~p~~~~~~~Ll~~y 323 (344)
.+|.-|-+.|-..+...++++|.++|+..+...|+.++...
T Consensus 114 GvL~~ak~kgLisk~Kpild~LI~~GF~iS~~~~eeiL~~~ 154 (157)
T COG2405 114 GVLALAKSKGLISKDKPILDELIEKGFRISRSILEEILRKL 154 (157)
T ss_pred HHHHHHHHcCcccchHHHHHHHHHhcCcccHHHHHHHHHHh
Confidence 35555667788888889999999999999988888887643
No 400
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=27.13 E-value=2.5e+02 Score=22.92 Aligned_cols=26 Identities=31% Similarity=0.376 Sum_probs=17.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC
Q 047934 248 LLIQGLYKCNKLEEAVEYCIEMLEAG 273 (344)
Q Consensus 248 ~LI~ay~k~g~~~~A~~lf~~M~~~g 273 (344)
++|+-+-+|...++|+++++-|.+.|
T Consensus 66 tViD~lrRC~T~EEALEVInylek~G 91 (128)
T PF09868_consen 66 TVIDYLRRCKTDEEALEVINYLEKRG 91 (128)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 45566667777777777777777665
No 401
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=27.06 E-value=3.2e+02 Score=23.37 Aligned_cols=64 Identities=6% Similarity=-0.067 Sum_probs=44.7
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 047934 197 GLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEE 261 (344)
Q Consensus 197 ~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~ 261 (344)
+.+++.|++.+..=. +++..+......-.|.+|++.|.+.+...+..|----|+.+.+.|-+.+
T Consensus 15 ~~L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~~ 78 (169)
T PRK11639 15 KLCAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVHK 78 (169)
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEEE
Confidence 345667887665444 5555555666677899999999988877777765556677777777643
No 402
>PRK13713 conjugal transfer protein TraM; Provisional
Probab=26.92 E-value=3.1e+02 Score=22.28 Aligned_cols=58 Identities=16% Similarity=0.190 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHcCCCCCHHHHHHHHH
Q 047934 224 FDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIE-MLEAGHSPNVTTFVGLVD 286 (344)
Q Consensus 224 ~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~-M~~~gv~pd~~ty~~lL~ 286 (344)
.++...+.++=+..|..+..++++++..++... .+++++. |...+-..|..-|+-+|-
T Consensus 6 ~e~I~~iVe~RrqEGA~~~Dvs~SSv~sMLLEL-----GLRVYeaQ~erkes~Fnq~eFnK~lL 64 (118)
T PRK13713 6 YEKINAIVEERRQEGAREKDVSFSSVASMLLEL-----GLRVYEAQMERKESGFNQTEFNKLLL 64 (118)
T ss_pred HHHHHHHHHHHHHcCCCccCccHHHHHHHHHHH-----hHHHHHHHHHhhcCcccHHHHHHHHH
Confidence 455555666666677777778888888777654 3666664 334444567777774443
No 403
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=26.90 E-value=8.2e+02 Score=26.83 Aligned_cols=83 Identities=12% Similarity=0.173 Sum_probs=48.2
Q ss_pred HHHHHHHHHH-HHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-C---CC----------CCHHHHHHHHHHHH
Q 047934 190 QEAMKLFGLM-REKGTIPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQSN-G---IA----------PNAFSYNLLIQGLY 254 (344)
Q Consensus 190 ~~A~~lf~~M-~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~-g---i~----------pd~~tyn~LI~ay~ 254 (344)
++..+++.++ .+.|+..+......++... .|++..++.+++++... + +. .+......+|++..
T Consensus 182 ~~l~~~L~~il~~EGv~id~eal~lLa~~s--gGdlR~Al~eLEKLia~~~~~~IT~e~V~allg~~~~~~I~~lidAL~ 259 (824)
T PRK07764 182 EVMRGYLERICAQEGVPVEPGVLPLVIRAG--GGSVRDSLSVLDQLLAGAGPEGVTYERAVALLGVTDSALIDEAVDALA 259 (824)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHhhcCCCCCCHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 4444444443 3457777777766665543 46787888877776531 1 11 11222234555544
Q ss_pred HcCCHHHHHHHHHHHHHcCCC
Q 047934 255 KCNKLEEAVEYCIEMLEAGHS 275 (344)
Q Consensus 255 k~g~~~~A~~lf~~M~~~gv~ 275 (344)
.++...++.+++++.+.|..
T Consensus 260 -~~D~a~al~~l~~Li~~G~d 279 (824)
T PRK07764 260 -AGDGAALFGTVDRVIEAGHD 279 (824)
T ss_pred -cCCHHHHHHHHHHHHHcCCC
Confidence 46777888888888877764
No 404
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=26.82 E-value=2.6e+02 Score=22.09 Aligned_cols=27 Identities=22% Similarity=0.202 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 047934 280 TFVGLVDGLCRERGVEKAQSVIATLKE 306 (344)
Q Consensus 280 ty~~lL~a~~~~G~~e~a~~l~~~M~~ 306 (344)
-|..++.-|...|..++|.+++..+..
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 478899999999999999999999887
No 405
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=26.72 E-value=1.3e+02 Score=16.89 Aligned_cols=27 Identities=7% Similarity=0.129 Sum_probs=12.5
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 047934 223 KFDDAKRIFRKMQSNGIAPNAFSYNLLI 250 (344)
Q Consensus 223 ~~e~A~~vf~~M~~~gi~pd~~tyn~LI 250 (344)
+.+.|..+|+++.... .-+...|...+
T Consensus 2 ~~~~~r~i~e~~l~~~-~~~~~~W~~y~ 28 (33)
T smart00386 2 DIERARKIYERALEKF-PKSVELWLKYA 28 (33)
T ss_pred cHHHHHHHHHHHHHHC-CCChHHHHHHH
Confidence 4455555555555432 12444444433
No 406
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=26.26 E-value=2.5e+02 Score=21.66 Aligned_cols=59 Identities=8% Similarity=0.158 Sum_probs=33.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHC
Q 047934 177 VAMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQK--FDDAKRIFRKMQSN 237 (344)
Q Consensus 177 ~tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~--~e~A~~vf~~M~~~ 237 (344)
..+|..|...++.++|...+.++.-.. --......+|..+...++ -+.+-.++..+...
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el~~~~--~~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~ 66 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKELKLPS--QHHEVVKVILECALEEKKSYREYYSKLLSHLCKR 66 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHTT-GG--GHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCCc--cHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhc
Confidence 357888888899999998887763321 122334444444444422 23455555555555
No 407
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=26.01 E-value=5.1e+02 Score=31.75 Aligned_cols=109 Identities=10% Similarity=0.128 Sum_probs=69.0
Q ss_pred HHHHHHHcCCHHHHHHHHHH----HHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 047934 179 MLDGLCKDGLIQEAMKLFGL----MREKGTIPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLY 254 (344)
Q Consensus 179 li~~~~k~g~~~~A~~lf~~----M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~ 254 (344)
+-.+-.+.+.+..|+..++. +.+.. -....|-.|...|+..+++|....+...-.. +. +...-|....
T Consensus 1389 La~aSfrc~~y~RalmylEs~~~~ek~~~--~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~-sl~~qil~~e 1460 (2382)
T KOG0890|consen 1389 LARASFRCKAYARALMYLESHRSTEKEKE--TEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DP-SLYQQILEHE 1460 (2382)
T ss_pred HHHHHHhhHHHHHHHHHHHHhccccchhH--HHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----Cc-cHHHHHHHHH
Confidence 44456677888889888887 32221 1344556666699999999988888774221 22 2233444566
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCCHHHH
Q 047934 255 KCNKLEEAVEYCIEMLEAGHSPN-VTTFVGLVDGLCRERGVEKA 297 (344)
Q Consensus 255 k~g~~~~A~~lf~~M~~~gv~pd-~~ty~~lL~a~~~~G~~e~a 297 (344)
..|++++|...|+.+...+ |+ ..+++-++..--..|.++.+
T Consensus 1461 ~~g~~~da~~Cye~~~q~~--p~~~~~~~g~l~sml~~~~l~t~ 1502 (2382)
T KOG0890|consen 1461 ASGNWADAAACYERLIQKD--PDKEKHHSGVLKSMLAIQHLSTE 1502 (2382)
T ss_pred hhccHHHHHHHHHHhhcCC--CccccchhhHHHhhhcccchhHH
Confidence 7899999999999987653 44 55566555444444444433
No 408
>PRK10304 ferritin; Provisional
Probab=25.96 E-value=2.3e+02 Score=24.27 Aligned_cols=106 Identities=11% Similarity=0.187 Sum_probs=47.3
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 047934 188 LIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCI 267 (344)
Q Consensus 188 ~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~ 267 (344)
..+.|.++++.+...|..|.......- ...+....++|+...+.-. --+..++.++..+-+.+++... .+++
T Consensus 50 E~~HA~kl~~~i~~rgg~~~~~~i~~p------~~~~~s~~e~~~~~l~~E~-~vt~~i~~l~~~A~~~~D~~t~-~fl~ 121 (165)
T PRK10304 50 EMTHMQRLFDYLTDTGNLPRINTVESP------FAEYSSLDELFQETYKHEQ-LITQKINELAHAAMTNQDYPTF-NFLQ 121 (165)
T ss_pred HHHHHHHHHHHHHHcCCCeeeCCCCCC------ccccCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcCCHhHH-HHHH
Confidence 345677777777777665543221100 0122233333333322110 0344566666666666665432 2233
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 047934 268 EMLEAGHSPNVTTFVGLVDGLCRERGVEKAQSVIA 302 (344)
Q Consensus 268 ~M~~~gv~pd~~ty~~lL~a~~~~G~~e~a~~l~~ 302 (344)
.+.+.-++ .......++.-....|+...+.-+++
T Consensus 122 ~fl~EQve-Ee~~~~~l~~~l~~~~~~g~~~y~~D 155 (165)
T PRK10304 122 WYVSEQHE-EEKLFKSIIDKLSLAGKSGEGLYFID 155 (165)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHhhCCCcchHHHHh
Confidence 33332111 23444445555555554333444444
No 409
>KOG2536 consensus MAM33, mitochondrial matrix glycoprotein [Energy production and conversion]
Probab=25.85 E-value=1.7e+02 Score=27.18 Aligned_cols=42 Identities=17% Similarity=0.355 Sum_probs=31.7
Q ss_pred HHHHHHHH-HHHCCCCCCHHHHHHHHHHcCCHHHHHHHHHHHH
Q 047934 159 EADEIFKK-MKETGLIPNAVAMLDGLCKDGLIQEAMKLFGLMR 200 (344)
Q Consensus 159 ~A~~lf~~-M~~~gi~p~~~tli~~~~k~g~~~~A~~lf~~M~ 200 (344)
+-.+.|.. +.++||.++....|.+|....+-.+-+..++.|+
T Consensus 216 ~Lqd~fh~fLEeRGI~esl~~FL~~ym~~Kd~rEYl~WlksvK 258 (263)
T KOG2536|consen 216 ELQDSFHRFLEERGIKESLASFLHAYMKNKDSREYLRWLKSVK 258 (263)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 34455554 5578999999999999999988777776666654
No 410
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=25.65 E-value=3.4e+02 Score=29.28 Aligned_cols=20 Identities=15% Similarity=0.238 Sum_probs=16.5
Q ss_pred CCCHHHHHHHHHHHHHCCCC
Q 047934 154 SEPPQEADEIFKKMKETGLI 173 (344)
Q Consensus 154 sg~~~~A~~lf~~M~~~gi~ 173 (344)
-|.+++|++++-+|-.+++.
T Consensus 747 ~g~feeaek~yld~drrDLA 766 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADRRDLA 766 (1189)
T ss_pred hcchhHhhhhhhccchhhhh
Confidence 47899999999998887754
No 411
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=25.45 E-value=5.9e+02 Score=24.15 Aligned_cols=119 Identities=8% Similarity=0.028 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH---cCCHHHHHHH
Q 047934 189 IQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYK---CNKLEEAVEY 265 (344)
Q Consensus 189 ~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k---~g~~~~A~~l 265 (344)
.+.-+.+++...+. -+-+....-.+|..+.+....++..+-|+++..... -+...|...|+.... .-.++.+.++
T Consensus 47 ~E~klsilerAL~~-np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~-~~~~LW~~yL~~~q~~~~~f~v~~~~~~ 124 (321)
T PF08424_consen 47 AERKLSILERALKH-NPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNP-GSPELWREYLDFRQSNFASFTVSDVRDV 124 (321)
T ss_pred HHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCC-CChHHHHHHHHHHHHHhccCcHHHHHHH
Confidence 34556666665555 335667777788888888888888888888877521 166777777776554 2245566666
Q ss_pred HHHHHHc------CC------CC--CHHHHHHHHHHH---HHcCCHHHHHHHHHHHHHCCC
Q 047934 266 CIEMLEA------GH------SP--NVTTFVGLVDGL---CRERGVEKAQSVIATLKEKGF 309 (344)
Q Consensus 266 f~~M~~~------gv------~p--d~~ty~~lL~a~---~~~G~~e~a~~l~~~M~~~Gi 309 (344)
|.+.... +. .+ +....-.+++.| ..+|..+.|..+++-+.+.++
T Consensus 125 y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 125 YEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 5554321 11 01 112222233332 368999999999999888765
No 412
>PRK09462 fur ferric uptake regulator; Provisional
Probab=25.33 E-value=3.2e+02 Score=22.64 Aligned_cols=59 Identities=19% Similarity=0.176 Sum_probs=32.0
Q ss_pred HHHHCCCCCCHH--HHHHHHHHc-CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 047934 166 KMKETGLIPNAV--AMLDGLCKD-GLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKF 224 (344)
Q Consensus 166 ~M~~~gi~p~~~--tli~~~~k~-g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~ 224 (344)
.+.++|+..+.. +++..+... +..-.|.++++.+.+.+...+..|.=--|+.+...|-+
T Consensus 7 ~l~~~glr~T~qR~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 7 ALKKAGLKVTLPRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred HHHHcCCCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCE
Confidence 345556554443 455655554 34556666777766666554554444444555555543
No 413
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=25.00 E-value=7.5e+02 Score=25.27 Aligned_cols=43 Identities=2% Similarity=-0.143 Sum_probs=26.1
Q ss_pred HHHHHHHHH-HHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 047934 191 EAMKLFGLM-REKGTIPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQ 235 (344)
Q Consensus 191 ~A~~lf~~M-~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~ 235 (344)
+..+.++.. ...|+..+......+.. ...|++..|+.++++..
T Consensus 184 ~i~~~L~~i~~~Egi~~e~eAL~~Ia~--~S~Gd~RdAL~lLeq~i 227 (484)
T PRK14956 184 VLQDYSEKLCKIENVQYDQEGLFWIAK--KGDGSVRDMLSFMEQAI 227 (484)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCChHHHHHHHHHHHH
Confidence 344444433 34567667776665554 35577888888887754
No 414
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=24.75 E-value=4.5e+02 Score=26.09 Aligned_cols=127 Identities=15% Similarity=0.161 Sum_probs=80.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----CCCCCCHHHHHH
Q 047934 178 AMLDGLCKDGLIQEAMKLFGLMREK-----GTIPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQS----NGIAPNAFSYNL 248 (344)
Q Consensus 178 tli~~~~k~g~~~~A~~lf~~M~~~-----g~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~----~gi~pd~~tyn~ 248 (344)
+|-.+..-.+-++++++.|+...+- .--....+|.+|=..|+...++++|.-+.....+ -+++-=..-|..
T Consensus 127 ~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~ 206 (518)
T KOG1941|consen 127 SMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRA 206 (518)
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHH
Confidence 4555666667889999999865432 1223457889999999999999988766554432 222211122332
Q ss_pred -----HHHHHHHcCCHHHHHHHHHHHHHcCC-CCCHHHHH----HHHHHHHHcCCHHHHHHHHHHH
Q 047934 249 -----LIQGLYKCNKLEEAVEYCIEMLEAGH-SPNVTTFV----GLVDGLCRERGVEKAQSVIATL 304 (344)
Q Consensus 249 -----LI~ay~k~g~~~~A~~lf~~M~~~gv-~pd~~ty~----~lL~a~~~~G~~e~a~~l~~~M 304 (344)
|--+|-..|.+.+|.+..++-.+.-+ .-|..++. .+-+.|...|+.|.|+.-++..
T Consensus 207 ~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 207 MSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 33456678888888888887543211 12555544 5566677889998887766653
No 415
>PF15469 Sec5: Exocyst complex component Sec5
Probab=24.63 E-value=4.5e+02 Score=22.50 Aligned_cols=25 Identities=20% Similarity=0.290 Sum_probs=15.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q 047934 212 TAVVDGFCKAQKFDDAKRIFRKMQS 236 (344)
Q Consensus 212 n~LI~ay~k~g~~e~A~~vf~~M~~ 236 (344)
-.-|.-|.+.|+++.+..-|.+.+.
T Consensus 90 P~~L~~~i~~~dy~~~i~dY~kak~ 114 (182)
T PF15469_consen 90 PSNLRECIKKGDYDQAINDYKKAKS 114 (182)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 3456666677777777766666543
No 416
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=24.62 E-value=1.6e+02 Score=26.73 Aligned_cols=44 Identities=11% Similarity=0.173 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 047934 226 DAKRIFRKMQSNGIAPN-AFSYNLLIQGLYKCNKLEEAVEYCIEM 269 (344)
Q Consensus 226 ~A~~vf~~M~~~gi~pd-~~tyn~LI~ay~k~g~~~~A~~lf~~M 269 (344)
.-..+++...+.|++.= ...|+++|+--.-.-+.++..+++..|
T Consensus 190 Nf~~I~~i~ldaGv~kviPHIYssiIDk~tG~TrpedV~~l~~~~ 234 (236)
T TIGR03581 190 NFEEIVQIALDAGVEKVIPHVYSSIIDKETGNTRVEDVKQLLAIV 234 (236)
T ss_pred hHHHHHHHHHHcCCCeeccccceeccccccCCCCHHHHHHHHHHh
Confidence 34444444444444321 234555555444444555555555444
No 417
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.45 E-value=1.2e+02 Score=33.26 Aligned_cols=76 Identities=13% Similarity=0.072 Sum_probs=56.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 047934 178 AMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCN 257 (344)
Q Consensus 178 tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g 257 (344)
++|..+.+.|..+-|+.+.++=..+ ...+..||+++.|++.-..+- |..+|.-|.......|
T Consensus 625 aiIaYLqKkgypeiAL~FVkD~~tR------------F~LaLe~gnle~ale~akkld------d~d~w~rLge~Al~qg 686 (1202)
T KOG0292|consen 625 AIIAYLQKKGYPEIALHFVKDERTR------------FELALECGNLEVALEAAKKLD------DKDVWERLGEEALRQG 686 (1202)
T ss_pred HHHHHHHhcCCcceeeeeecCcchh------------eeeehhcCCHHHHHHHHHhcC------cHHHHHHHHHHHHHhc
Confidence 6788888888888888776543221 233467888888887766553 6778999999888899
Q ss_pred CHHHHHHHHHHHHH
Q 047934 258 KLEEAVEYCIEMLE 271 (344)
Q Consensus 258 ~~~~A~~lf~~M~~ 271 (344)
+.+-|+..|+..+.
T Consensus 687 n~~IaEm~yQ~~kn 700 (1202)
T KOG0292|consen 687 NHQIAEMCYQRTKN 700 (1202)
T ss_pred chHHHHHHHHHhhh
Confidence 99888888887664
No 418
>PHA02875 ankyrin repeat protein; Provisional
Probab=23.97 E-value=1.9e+02 Score=28.01 Aligned_cols=138 Identities=11% Similarity=0.123 Sum_probs=76.3
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHHcCCHHH
Q 047934 154 SEPPQEADEIFKKMKETGLIPNA-----VAMLDGLCKDGLIQEAMKLFGLMREKGTIPEVV--IYTAVVDGFCKAQKFDD 226 (344)
Q Consensus 154 sg~~~~A~~lf~~M~~~gi~p~~-----~tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~--tyn~LI~ay~k~g~~e~ 226 (344)
.|+++-+ +.+.+.|..|+. .|.+...+..|+.+ +.+.+.+.|..|+.. ...+.+...++.|+.+.
T Consensus 12 ~g~~~iv----~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~ 83 (413)
T PHA02875 12 FGELDIA----RRLLDIGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKA 83 (413)
T ss_pred hCCHHHH----HHHHHCCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCCHHH
Confidence 4555554 444456765543 25677777888876 445556677666543 22345666678899887
Q ss_pred HHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH--HHHHHHHHHcCCHHHHHHH
Q 047934 227 AKRIFRKMQSNGIAPNA----FSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTF--VGLVDGLCRERGVEKAQSV 300 (344)
Q Consensus 227 A~~vf~~M~~~gi~pd~----~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty--~~lL~a~~~~G~~e~a~~l 300 (344)
+..+++ .|...+. .-++ .+...+..|+.+ +++.+.+.|..|+.... .+.|...+..|+.+.+..+
T Consensus 84 v~~Ll~----~~~~~~~~~~~~g~t-pL~~A~~~~~~~----iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~L 154 (413)
T PHA02875 84 VEELLD----LGKFADDVFYKDGMT-PLHLATILKKLD----IMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELL 154 (413)
T ss_pred HHHHHH----cCCcccccccCCCCC-HHHHHHHhCCHH----HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence 766664 3322211 1223 333445566664 44455566766554321 2345555677887655444
Q ss_pred HHHHHHCCCccc
Q 047934 301 IATLKEKGFLVN 312 (344)
Q Consensus 301 ~~~M~~~Gi~p~ 312 (344)
.+.|..++
T Consensus 155 ----l~~g~~~~ 162 (413)
T PHA02875 155 ----IDHKACLD 162 (413)
T ss_pred ----HhcCCCCC
Confidence 45565544
No 419
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=23.86 E-value=9.3e+02 Score=25.93 Aligned_cols=46 Identities=15% Similarity=0.213 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHH-HCCCCCCHHHH-HHHHHHcCCHHHHHHHHHHHHHc
Q 047934 157 PQEADEIFKKMK-ETGLIPNAVAM-LDGLCKDGLIQEAMKLFGLMREK 202 (344)
Q Consensus 157 ~~~A~~lf~~M~-~~gi~p~~~tl-i~~~~k~g~~~~A~~lf~~M~~~ 202 (344)
.++..+.+.... ..|+..+..++ .-+-...|++..|+.+++++...
T Consensus 180 ~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~GslRdAlnLLDqaia~ 227 (709)
T PRK08691 180 AQQVADHLAHVLDSEKIAYEPPALQLLGRAAAGSMRDALSLLDQAIAL 227 (709)
T ss_pred HHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 344444444333 34655444332 11122257888888888776543
No 420
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=23.79 E-value=3.9e+02 Score=21.58 Aligned_cols=79 Identities=14% Similarity=0.146 Sum_probs=39.6
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 047934 188 LIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCI 267 (344)
Q Consensus 188 ~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~ 267 (344)
..+||..+.+++...+-. ...+--+-+..+...|++++|+ .. ....-.||...|-+|-.. +.|..+++...+.
T Consensus 21 cH~EA~tIa~wL~~~~~~-~E~v~lIr~~sLmNrG~Yq~AL--l~--~~~~~~pdL~p~~AL~a~--klGL~~~~e~~l~ 93 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGEM-EEVVALIRLSSLMNRGDYQEAL--LL--PQCHCYPDLEPWAALCAW--KLGLASALESRLT 93 (116)
T ss_dssp -HHHHHHHHHHHHHTTTT-HHHHHHHHHHHHHHTT-HHHHH--HH--HTTS--GGGHHHHHHHHH--HCT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcH-HHHHHHHHHHHHHhhHHHHHHH--Hh--cccCCCccHHHHHHHHHH--hhccHHHHHHHHH
Confidence 456666666666665431 2222223333455667777771 11 112235667776666443 6777777777666
Q ss_pred HHHHcC
Q 047934 268 EMLEAG 273 (344)
Q Consensus 268 ~M~~~g 273 (344)
++...|
T Consensus 94 rla~~g 99 (116)
T PF09477_consen 94 RLASSG 99 (116)
T ss_dssp HHCT-S
T ss_pred HHHhCC
Confidence 665554
No 421
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=23.72 E-value=5.4e+02 Score=23.16 Aligned_cols=56 Identities=11% Similarity=0.203 Sum_probs=38.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCC--------------CCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 047934 212 TAVVDGFCKAQKFDDAKRIFRKMQSNGIA--------------PNAFSYNLLIQGLYKCNKLEEAVEYCI 267 (344)
Q Consensus 212 n~LI~ay~k~g~~e~A~~vf~~M~~~gi~--------------pd~~tyn~LI~ay~k~g~~~~A~~lf~ 267 (344)
-++|-.|-+.-.+.+++++++.|.+..+. +--..-|.....+.+.|.+|.|+.+++
T Consensus 136 iS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLr 205 (233)
T PF14669_consen 136 ISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLR 205 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHh
Confidence 56667777777788888888887664332 223445677777778888888877665
No 422
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=23.65 E-value=6.6e+02 Score=24.13 Aligned_cols=134 Identities=13% Similarity=0.099 Sum_probs=85.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH-------HHHHHHHHHcCCHHHHHHHHHHHHH----CCCCCCHHHHH
Q 047934 179 MLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIY-------TAVVDGFCKAQKFDDAKRIFRKMQS----NGIAPNAFSYN 247 (344)
Q Consensus 179 li~~~~k~g~~~~A~~lf~~M~~~g~~pd~~ty-------n~LI~ay~k~g~~e~A~~vf~~M~~----~gi~pd~~tyn 247 (344)
+.+..++..++++|..++......|+..|..+. .-+...|...|+.....++.....+ -.-...+....
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiir 88 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIR 88 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHH
Confidence 455667788999999999999999887765544 5577788888887665555543322 21122445666
Q ss_pred HHHHHHHHc-CCHHHHHHHHHHHHHcCCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHH----HHHCCCccc
Q 047934 248 LLIQGLYKC-NKLEEAVEYCIEMLEAGHSPNV-----TTFVGLVDGLCRERGVEKAQSVIAT----LKEKGFLVN 312 (344)
Q Consensus 248 ~LI~ay~k~-g~~~~A~~lf~~M~~~gv~pd~-----~ty~~lL~a~~~~G~~e~a~~l~~~----M~~~Gi~p~ 312 (344)
+||+.+-.. ..+++.+++.....++-..-.. ..=.-++..+.+.|.+.+|..++.. +++..=+++
T Consensus 89 tLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~ 163 (421)
T COG5159 89 TLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKIN 163 (421)
T ss_pred HHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccc
Confidence 777776543 4566766666665543221111 1224578888899999988876664 444454554
No 423
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=23.64 E-value=1.8e+02 Score=30.12 Aligned_cols=113 Identities=12% Similarity=0.054 Sum_probs=31.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCCHHHHH
Q 047934 207 EVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEA----GHSPNVTTFV 282 (344)
Q Consensus 207 d~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~----gv~pd~~ty~ 282 (344)
+...-.-++..|.+.|..+.|..+.+.+-.+-+ ..--|..-|..++++|+.+.+..+-+.+.+. |...+....+
T Consensus 404 t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~~ll~~~~~~~~~~~~~ll~ 481 (566)
T PF07575_consen 404 TNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIADRLLEEYCNNGEPLDDDLLD 481 (566)
T ss_dssp SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH--------------------------------
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHhcCCCcccHHHHH
Confidence 455667788888888888888888887754311 2235777778888888887766666555532 2222221111
Q ss_pred HH---------HHHHH---------HcCCHHHHHHHHHHHHHCCCcccHHHHHHHHh
Q 047934 283 GL---------VDGLC---------RERGVEKAQSVIATLKEKGFLVNDKAVREFLD 321 (344)
Q Consensus 283 ~l---------L~a~~---------~~G~~e~a~~l~~~M~~~Gi~p~~~~~~~Ll~ 321 (344)
.+ |..|+ +.|++.+|.+.+-.+.+..+.|...-...|.+
T Consensus 482 ~i~~~~~~~~~L~fla~yreF~~~~~~~~~~~Aa~~Lv~Ll~~~~~Pk~f~~~LL~d 538 (566)
T PF07575_consen 482 NIGSPMLLSQRLSFLAKYREFYELYDEGDFREAASLLVSLLKSPIAPKSFWPLLLCD 538 (566)
T ss_dssp ---------------------------------------------------------
T ss_pred HhcchhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHCCCCCcHHHHHHHHHH
Confidence 11 11111 23566666666666666666666555444444
No 424
>cd08329 CARD_BIRC2_BIRC3 Caspase activation and recruitment domain found in Baculoviral IAP repeat-containing proteins, BIRC2 (c-IAP1) and BIRC3 (c-IAP2). Caspase activation and recruitment domain (CARD) similar to those found in Baculoviral IAP repeat (BIR)-containing protein 2 (BIRC2) or cellular Inhibitor of Apoptosis Protein 1 (c-IAP1), and BIRC3 (or c-IAP2). IAPs are anti-apoptotic proteins that contain at least one BIR domain. Most IAPs also contain a C-terminal RING domain. In addition, both BIRC2 and BIRC3 contain a CARD. BIRC2 and BIRC3, through their binding with TRAF (TNF receptor-associated factor) 2, are recruited to TNFR-1/2 signaling complexes, where they regulate caspase-8 activity. They also play important roles in pro-survival NF-kB signaling pathways. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interac
Probab=23.32 E-value=3.5e+02 Score=20.84 Aligned_cols=53 Identities=13% Similarity=-0.002 Sum_probs=22.6
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 047934 161 DEIFKKMKETGLIPNAVAMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGF 218 (344)
Q Consensus 161 ~~lf~~M~~~gi~p~~~tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay 218 (344)
..+++.+.++|+. +..-+=...+..-..++|.++++....+| ..+|.+++.++
T Consensus 26 ~~ilD~Ll~~~Vl-t~ee~e~I~~~~t~~~qAr~Lld~l~~KG----~~A~~~F~~~L 78 (94)
T cd08329 26 LPILDSLLSANVI-TEQEYDVIKQKTQTPLQARELIDTVLVKG----NAAAEVFRNCL 78 (94)
T ss_pred HHHHHHHHHcCCC-CHHHHHHHHcCCChHHHHHHHHHHHHhhh----HHHHHHHHHHH
Confidence 3455555555544 22222222223333455555555555443 34444444444
No 425
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=23.14 E-value=4.1e+02 Score=21.50 Aligned_cols=75 Identities=21% Similarity=0.269 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHH--HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 047934 157 PQEADEIFKKMKETGLIPNAVAMLDG--LCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRIFRKM 234 (344)
Q Consensus 157 ~~~A~~lf~~M~~~gi~p~~~tli~~--~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M 234 (344)
.++|..+.+.+...+..-..++||+. +...|++++|+. .......||...|-+|-. .+.|--+++...+.++
T Consensus 22 H~EA~tIa~wL~~~~~~~E~v~lIr~~sLmNrG~Yq~ALl----~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rl 95 (116)
T PF09477_consen 22 HQEANTIADWLEQEGEMEEVVALIRLSSLMNRGDYQEALL----LPQCHCYPDLEPWAALCA--WKLGLASALESRLTRL 95 (116)
T ss_dssp HHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHTT-HHHHHH----HHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHHHH----hcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHH
Confidence 55566666655555543223344332 334555555511 111223455555544433 3555555555555555
Q ss_pred HHC
Q 047934 235 QSN 237 (344)
Q Consensus 235 ~~~ 237 (344)
..+
T Consensus 96 a~~ 98 (116)
T PF09477_consen 96 ASS 98 (116)
T ss_dssp CT-
T ss_pred HhC
Confidence 444
No 426
>PHA03100 ankyrin repeat protein; Provisional
Probab=22.75 E-value=5.1e+02 Score=25.52 Aligned_cols=64 Identities=14% Similarity=0.090 Sum_probs=31.0
Q ss_pred HHHHHHHCCCCCCH-----HHHHHHHHHcC--CHHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHHcCCHHHHHHH
Q 047934 163 IFKKMKETGLIPNA-----VAMLDGLCKDG--LIQEAMKLFGLMREKGTIPEVVI--YTAVVDGFCKAQKFDDAKRI 230 (344)
Q Consensus 163 lf~~M~~~gi~p~~-----~tli~~~~k~g--~~~~A~~lf~~M~~~g~~pd~~t--yn~LI~ay~k~g~~e~A~~v 230 (344)
+++.+.+.|..++. .+.+...+..| ..+ +.+.+.+.|..++... ..+.+...+..|+.+-+..+
T Consensus 123 iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~----iv~~Ll~~g~din~~d~~g~tpL~~A~~~~~~~iv~~L 195 (480)
T PHA03100 123 IVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLK----ILKLLIDKGVDINAKNRYGYTPLHIAVEKGNIDVIKFL 195 (480)
T ss_pred HHHHHHHcCCCCCccCCCCCcHHHHHHHcCCChHH----HHHHHHHCCCCcccccCCCCCHHHHHHHhCCHHHHHHH
Confidence 34444455544322 25666666666 433 3444555665544322 12345555566655444333
No 427
>PRK11906 transcriptional regulator; Provisional
Probab=22.74 E-value=8.1e+02 Score=24.84 Aligned_cols=140 Identities=9% Similarity=0.008 Sum_probs=86.0
Q ss_pred CHHHHHHHHHHHHH-cCCCCC-HHHHHHHHHHHHH---------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 047934 188 LIQEAMKLFGLMRE-KGTIPE-VVIYTAVVDGFCK---------AQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKC 256 (344)
Q Consensus 188 ~~~~A~~lf~~M~~-~g~~pd-~~tyn~LI~ay~k---------~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~ 256 (344)
..+.|+.+|.+... ..+.|+ ...|..+-.++.. .....+|.++-+...+.+ .-|......+=.++.-.
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence 34578888888772 234454 3333332222211 123456666666666654 22566665555556777
Q ss_pred CCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHH-CCCcccHHHHHHHHhccCCCChHH
Q 047934 257 NKLEEAVEYCIEMLEAGHSPNV-TTFVGLVDGLCRERGVEKAQSVIATLKE-KGFLVNDKAVREFLDKKAPFSSSV 330 (344)
Q Consensus 257 g~~~~A~~lf~~M~~~gv~pd~-~ty~~lL~a~~~~G~~e~a~~l~~~M~~-~Gi~p~~~~~~~Ll~~yak~g~~~ 330 (344)
++++.|..+|++-... .||. .+|-..--.+.-.|+.++|.+.++...+ .-...-..+....+++|...+-+.
T Consensus 352 ~~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~~~~ 425 (458)
T PRK11906 352 GQAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNPLKN 425 (458)
T ss_pred cchhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCchhh
Confidence 8899999999998765 4543 2233333333457999999999998444 345555667777888998877644
No 428
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.59 E-value=6.5e+02 Score=23.64 Aligned_cols=50 Identities=6% Similarity=-0.044 Sum_probs=23.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHC---CCcccHHHHHHHHhccCCCChHH
Q 047934 281 FVGLVDGLCRERGVEKAQSVIATLKEK---GFLVNDKAVREFLDKKAPFSSSV 330 (344)
Q Consensus 281 y~~lL~a~~~~G~~e~a~~l~~~M~~~---Gi~p~~~~~~~Ll~~yak~g~~~ 330 (344)
|.+.|-.+....++..|++.+..--.- .-.-+..+..-||.+|-.-..+.
T Consensus 193 ~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd~gD~E~ 245 (308)
T KOG1585|consen 193 YVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYDEGDIEE 245 (308)
T ss_pred HHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhccCCHHH
Confidence 334444444445555565555542221 11223455555666665444433
No 429
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=21.59 E-value=9.7e+02 Score=25.30 Aligned_cols=84 Identities=13% Similarity=0.173 Sum_probs=45.0
Q ss_pred CHHHHHHHHHH-HHHCCCCCCHHHH-HHHHHHcCCHHHHHHHHHHHHHcCCC-------------CCHHHHHHHHHHHHH
Q 047934 156 PPQEADEIFKK-MKETGLIPNAVAM-LDGLCKDGLIQEAMKLFGLMREKGTI-------------PEVVIYTAVVDGFCK 220 (344)
Q Consensus 156 ~~~~A~~lf~~-M~~~gi~p~~~tl-i~~~~k~g~~~~A~~lf~~M~~~g~~-------------pd~~tyn~LI~ay~k 220 (344)
..++..+.+.. +...|+..+..++ +-+-...|++..|+.++++....|-. .+......|++++..
T Consensus 184 s~eei~~~L~~i~~~egi~ie~~AL~~La~~s~GslR~al~lLdq~ia~~~~~It~~~V~~~Lg~~~~~~i~~LldaL~~ 263 (618)
T PRK14951 184 APETVLEHLTQVLAAENVPAEPQALRLLARAARGSMRDALSLTDQAIAFGSGQLQEAAVRQMLGSVDRSHVFRLIDALAQ 263 (618)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence 34454555544 3456776554432 22224458899999988766543311 122233344444333
Q ss_pred cCCHHHHHHHHHHHHHCCCC
Q 047934 221 AQKFDDAKRIFRKMQSNGIA 240 (344)
Q Consensus 221 ~g~~e~A~~vf~~M~~~gi~ 240 (344)
++...++.++++|.+.|..
T Consensus 264 -~d~~~al~~l~~l~~~G~~ 282 (618)
T PRK14951 264 -GDGRTVVETADELRLNGLS 282 (618)
T ss_pred -CCHHHHHHHHHHHHHcCCC
Confidence 5666666666666666554
No 430
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=21.57 E-value=5.9e+02 Score=22.78 Aligned_cols=108 Identities=17% Similarity=0.210 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHH-HHHHcCC--HHHHHH
Q 047934 190 QEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQSN--GIAPNAFSYNLLIQ-GLYKCNK--LEEAVE 264 (344)
Q Consensus 190 ~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~--gi~pd~~tyn~LI~-ay~k~g~--~~~A~~ 264 (344)
++++++-.++.. ++...-.....|++++|.+-++.+.+. .++--...|.-+.. ++|.++. +-+|.-
T Consensus 20 EE~l~lsRei~r---------~s~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~ 90 (204)
T COG2178 20 EEALKLSREIVR---------LSGEAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATL 90 (204)
T ss_pred HHHHHHHHHHHH---------HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHH
Confidence 556666665543 344444556778899998888887542 12223445666665 5666554 446776
Q ss_pred HHHHHHHcCC------CCCHHHHH-HHHHH----------HHHcCCHHHHHHHHHHHHH
Q 047934 265 YCIEMLEAGH------SPNVTTFV-GLVDG----------LCRERGVEKAQSVIATLKE 306 (344)
Q Consensus 265 lf~~M~~~gv------~pd~~ty~-~lL~a----------~~~~G~~e~a~~l~~~M~~ 306 (344)
++.-....++ ..+...|- .+.++ ..+.|+++.|.+.++-|.+
T Consensus 91 l~~~l~~~~~ps~~EL~V~~~~YilGl~D~vGELrR~~le~l~~~~~~~Ae~~~~~ME~ 149 (204)
T COG2178 91 LYSILKDGRLPSPEELGVPPIAYILGLADAVGELRRHVLELLRKGSFEEAERFLKFMEK 149 (204)
T ss_pred HHHHHhcCCCCCHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 6666655432 11222221 11111 1346889999999988875
No 431
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=21.41 E-value=6.3e+02 Score=23.06 Aligned_cols=92 Identities=16% Similarity=0.205 Sum_probs=42.7
Q ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---CHHHHH--HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH-HH-
Q 047934 175 NAVAMLDGLCKDGLIQEAMKLFGLMREKGTIP---EVVIYT--AVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFS-YN- 247 (344)
Q Consensus 175 ~~~tli~~~~k~g~~~~A~~lf~~M~~~g~~p---d~~tyn--~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~t-yn- 247 (344)
+.+.||--|.-+..+.+|-+.|. ...|+.+ |..+++ .-|....+.|++++|.+....+.-.-+.-|... |.
T Consensus 28 d~n~LVmnylv~eg~~EaA~~Fa--~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~~l~F~L 105 (228)
T KOG2659|consen 28 DLNRLVMNYLVHEGYVEAAEKFA--KESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNRELFFHL 105 (228)
T ss_pred hHHHHHHHHHHhccHHHHHHHhc--cccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccchhHHHHH
Confidence 34454333333333333444442 3345544 333332 345556777777777777766643322223211 11
Q ss_pred --HHHHHHHHcCCHHHHHHHHHH
Q 047934 248 --LLIQGLYKCNKLEEAVEYCIE 268 (344)
Q Consensus 248 --~LI~ay~k~g~~~~A~~lf~~ 268 (344)
.-+-=..+.|..++|+++++.
T Consensus 106 q~q~lIEliR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 106 QQLHLIELIREGKTEEALEFAQT 128 (228)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHH
Confidence 111123455666666665554
No 432
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=21.27 E-value=6.1e+02 Score=22.85 Aligned_cols=126 Identities=14% Similarity=0.117 Sum_probs=93.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 047934 178 AMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCN 257 (344)
Q Consensus 178 tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g 257 (344)
++..+..+.=+++..++-.. .+-.+.|++.---.|-.+..+.|+..+|+..|++-..--+.-|....-.+-.+....+
T Consensus 61 ~~~~a~~q~ldP~R~~Rea~--~~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~ 138 (251)
T COG4700 61 TLLMALQQKLDPERHLREAT--EELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQ 138 (251)
T ss_pred HHHHHHHHhcChhHHHHHHH--HHHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhc
Confidence 45555555545544333211 1223567887778899999999999999999999876545567788888888888999
Q ss_pred CHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 047934 258 KLEEAVEYCIEMLEA---GHSPNVTTFVGLVDGLCRERGVEKAQSVIATLKEK 307 (344)
Q Consensus 258 ~~~~A~~lf~~M~~~---gv~pd~~ty~~lL~a~~~~G~~e~a~~l~~~M~~~ 307 (344)
++..|...++.+.+. +-.|| +...+-+.+...|..+.|+.-|+.....
T Consensus 139 ~~A~a~~tLe~l~e~~pa~r~pd--~~Ll~aR~laa~g~~a~Aesafe~a~~~ 189 (251)
T COG4700 139 EFAAAQQTLEDLMEYNPAFRSPD--GHLLFARTLAAQGKYADAESAFEVAISY 189 (251)
T ss_pred cHHHHHHHHHHHhhcCCccCCCC--chHHHHHHHHhcCCchhHHHHHHHHHHh
Confidence 999999999998875 34455 3455677888899999999999888775
No 433
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=21.19 E-value=7.8e+02 Score=24.03 Aligned_cols=92 Identities=15% Similarity=0.167 Sum_probs=62.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHCCCCCC----HHHHHH
Q 047934 178 AMLDGLCKDGLIQEAMKLFGLMRE----KGTIPEVVIYTAVVDGFC-KAQKFDDAKRIFRKMQSNGIAPN----AFSYNL 248 (344)
Q Consensus 178 tli~~~~k~g~~~~A~~lf~~M~~----~g~~pd~~tyn~LI~ay~-k~g~~e~A~~vf~~M~~~gi~pd----~~tyn~ 248 (344)
....-||+-|+-+.|++.+....+ .|.+.|++.+.+-|.-+. ...-+.+-.+.-+.|.+.|-..+ ..+|-.
T Consensus 109 ~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKvY~G 188 (393)
T KOG0687|consen 109 RKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKVYQG 188 (393)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHHHHH
Confidence 356789999999999998876543 488889888876655443 33335566666666777765544 345655
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Q 047934 249 LIQGLYKCNKLEEAVEYCIEMLE 271 (344)
Q Consensus 249 LI~ay~k~g~~~~A~~lf~~M~~ 271 (344)
|-.+ ...++.+|-.+|-+...
T Consensus 189 ly~m--svR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 189 LYCM--SVRNFKEAADLFLDSVS 209 (393)
T ss_pred HHHH--HHHhHHHHHHHHHHHcc
Confidence 5433 34678888888877654
No 434
>cd08785 CARD_CARD9-like Caspase activation and recruitment domain of CARD9 and related proteins. Caspase activation and recruitment domain (CARD) found in CARD9, CARD14 (CARMA2), CARD10 (CARMA3), CARD11 (CARMA1) and BCL10. BCL10 (B-cell lymphoma 10), together with Malt1 (mucosa-associated lymphoid tissue-lymphoma-translocation gene 1), are integral components of the CBM signalosome. They associate with CARD9 to form M-CBM (CBM complex in myeloid immune cells), and with CARD11 to form L-CBM (CBM complex in lymphoid immune cells), which mediates activation of NF-kB and MAPK by ITAM-coupled receptors expressed on immune cells. BCL10/Malt1 also associates with CARD10, which is more widely expressed and is not restricted to hematopoietic cells, to play a role in GPCR-induced NF-kB activation. CARD14 has also been shown to associate with BCL10. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inf
Probab=21.06 E-value=3.8e+02 Score=20.43 Aligned_cols=44 Identities=7% Similarity=0.192 Sum_probs=22.9
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHcC---CHHHHHHHHHHHHHcCC
Q 047934 160 ADEIFKKMKETGLIPNAVAMLDGLCKDG---LIQEAMKLFGLMREKGT 204 (344)
Q Consensus 160 A~~lf~~M~~~gi~p~~~tli~~~~k~g---~~~~A~~lf~~M~~~g~ 204 (344)
+.++++.|.+.||. +..-.=...++.. +.+.|..+++.+..+|-
T Consensus 18 ~~~l~d~L~q~~VL-t~~d~EeI~~~~t~~~r~~ka~~LLdiL~~rG~ 64 (86)
T cd08785 18 PSRLTPYLRQCKVL-DEQDEEEVLSSPRLPIRANRTGRLLDILATRGK 64 (86)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHhCCCccccHHHHHHHHHHHHHhcCc
Confidence 44466677776654 3332222223333 33666666666666654
No 435
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=21.01 E-value=9.6e+02 Score=25.01 Aligned_cols=96 Identities=10% Similarity=0.041 Sum_probs=57.3
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 047934 205 IPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTFVGL 284 (344)
Q Consensus 205 ~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty~~l 284 (344)
..|....-++|+.++.+-++.-++.+..+|.+-| -+...|-.++.+|..+ .-+.-..+++++.+..+ |.+.+.-.
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df--nDvv~~Re 137 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF--NDVVIGRE 137 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc--hhHHHHHH
Confidence 3456666778888888888888888888877643 2556677777877777 44555666666655432 23333333
Q ss_pred HHHHHHcCCHHHHHHHHHHHH
Q 047934 285 VDGLCRERGVEKAQSVIATLK 305 (344)
Q Consensus 285 L~a~~~~G~~e~a~~l~~~M~ 305 (344)
|.-+...++.+.+..+|....
T Consensus 138 La~~yEkik~sk~a~~f~Ka~ 158 (711)
T COG1747 138 LADKYEKIKKSKAAEFFGKAL 158 (711)
T ss_pred HHHHHHHhchhhHHHHHHHHH
Confidence 333333355555555555443
No 436
>COG2042 Uncharacterized conserved protein [Function unknown]
Probab=20.79 E-value=5.4e+02 Score=22.41 Aligned_cols=62 Identities=19% Similarity=0.207 Sum_probs=35.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHH
Q 047934 207 EVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSY-NLLIQGLYKCNKLEEAVEYCIEMLE 271 (344)
Q Consensus 207 d~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~ty-n~LI~ay~k~g~~~~A~~lf~~M~~ 271 (344)
-..+--++..++.-.|..++|.++..... .| ++-.-. --+++.|.++.+-.+..++=++..+
T Consensus 114 kLss~EAlaAaLYI~G~~deA~~lls~F~-WG--~~FleLN~e~Le~Y~~a~~s~eVveiq~~~l~ 176 (179)
T COG2042 114 KLSSAEALAAALYIVGFKDEASELLSKFK-WG--HTFLELNKELLEEYSNAEDSAEVVEIQEEYLE 176 (179)
T ss_pred hhchHHHHHHHHHHhCcHHHHHHHHhhCc-cc--HHHHHHhHHHHHHHHhccchHHHHHHHHHHHh
Confidence 34455677777777788888877765431 00 011111 2467777777777666666555443
No 437
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=20.63 E-value=2.2e+02 Score=22.24 Aligned_cols=47 Identities=9% Similarity=0.167 Sum_probs=25.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 047934 214 VVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLE 260 (344)
Q Consensus 214 LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~ 260 (344)
++..+...+..-.|.++++.+.+.+...+..|---.|+.+.+.|-+.
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~ 52 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVR 52 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEE
Confidence 44444454555556666666666655555555444455555555443
No 438
>KOG2214 consensus Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]
Probab=20.60 E-value=4.9e+02 Score=26.80 Aligned_cols=92 Identities=14% Similarity=0.176 Sum_probs=0.0
Q ss_pred HHHHHHHCCCCCCHH------HHHHHHHHcCCHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 047934 163 IFKKMKETGLIPNAV------AMLDGLCKDGLIQEAMKLFGLMREKGT---IPEVVIYTAVVDGFCKAQKFDDAKRIFRK 233 (344)
Q Consensus 163 lf~~M~~~gi~p~~~------tli~~~~k~g~~~~A~~lf~~M~~~g~---~pd~~tyn~LI~ay~k~g~~e~A~~vf~~ 233 (344)
|...+.+.++.|... +++.+.......+|-..+|.......+ .-|..-+-..+.-|...|.+.+...+-..
T Consensus 192 VlrtL~e~dLlP~IIsGsS~GaivAsl~~v~~~eEl~~Ll~~~~~~~~~if~dd~~n~~~~ikr~~~~G~~~Di~~l~~~ 271 (543)
T KOG2214|consen 192 VLRTLLEQDLLPNIISGSSAGAIVASLVGVRSNEELKQLLTNFLHSLFNIFQDDLGNLLTIIKRYFTQGALFDISHLACV 271 (543)
T ss_pred HHHHHHHccccchhhcCCchhHHHHHHHhhcchHHHHHHhccchHhhhhhhcCcchhHHHHHHHHHhcchHHHHHHHHHH
Q ss_pred HHHCCC-----------------------------------CCCHHHHHHHHHHHH
Q 047934 234 MQSNGI-----------------------------------APNAFSYNLLIQGLY 254 (344)
Q Consensus 234 M~~~gi-----------------------------------~pd~~tyn~LI~ay~ 254 (344)
|+..-. .||+..|+++...|+
T Consensus 272 ~~~~~~~lTFqEAY~rTGrIlNItV~p~s~~e~P~lLNylTaPnVLIWSAV~aScs 327 (543)
T KOG2214|consen 272 MKKRLGNLTFQEAYDRTGRILNIVVPPSSKSEPPRLLNYLTAPNVLIWSAVCASCS 327 (543)
T ss_pred HHHHhcchhHHHHHHhhCceEEEEECccccCCChhHhhccCCCceehhHHHHHhcc
No 439
>PRK14136 recX recombination regulator RecX; Provisional
Probab=20.49 E-value=7.6e+02 Score=23.64 Aligned_cols=63 Identities=11% Similarity=0.207 Sum_probs=37.2
Q ss_pred HHHHHHHcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 047934 179 MLDGLCKDGL-IQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAF 244 (344)
Q Consensus 179 li~~~~k~g~-~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~ 244 (344)
|..-+.+.|. .+.+.++++.+.+.|+.-|..--..++.. +.+. .--.+|-.+|..+||..+.+
T Consensus 182 Lr~KL~kkG~~ee~IE~VIerLke~gYLDDeRFAesyVr~--R~~k-kGp~rIrqELrQKGId~eLI 245 (309)
T PRK14136 182 LARKLAPYADESDSVEPLLDALEREGWLSDARFAESLVHR--RASR-VGSARIVSELKRHAVGDALV 245 (309)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHcCCcCHHHHHHHHHHH--Hhhc-hhHHHHHHHHHHcCCCHHHH
Confidence 4444444443 34566778888888876555555555543 2333 23456777888888874443
No 440
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=20.35 E-value=2.8e+02 Score=31.44 Aligned_cols=115 Identities=13% Similarity=0.094 Sum_probs=68.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCCH--HHHHHHHHHHHHcC--CHHHHHHHHHHHHHCC--------CC
Q 047934 178 AMLDGLCKDGLIQEAMKLFGLMREK-----GTIPEV--VIYTAVVDGFCKAQ--KFDDAKRIFRKMQSNG--------IA 240 (344)
Q Consensus 178 tli~~~~k~g~~~~A~~lf~~M~~~-----g~~pd~--~tyn~LI~ay~k~g--~~e~A~~vf~~M~~~g--------i~ 240 (344)
+++.+-....++.|-+-+++++++. .++-|. .-|...|....++| .+++++.+.++ +| ..
T Consensus 856 al~VAq~SqkDPkEyLP~L~el~~m~~~~rkF~ID~~L~ry~~AL~hLs~~~~~~~~e~~n~I~k---h~Ly~~aL~ly~ 932 (1265)
T KOG1920|consen 856 ALLVAQKSQKDPKEYLPFLNELKKMETLLRKFKIDDYLKRYEDALSHLSECGETYFPECKNYIKK---HGLYDEALALYK 932 (1265)
T ss_pred HHHHHHHhccChHHHHHHHHHHhhchhhhhheeHHHHHHHHHHHHHHHHHcCccccHHHHHHHHh---cccchhhhheec
Confidence 3566777778999999888888733 233333 34566777777777 56666665432 22 35
Q ss_pred CCHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 047934 241 PNAFSYNLLIQGLY----KCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRERGVEKAQSVIATL 304 (344)
Q Consensus 241 pd~~tyn~LI~ay~----k~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~~e~a~~l~~~M 304 (344)
|+...+.....+|+ ....+++|.-+|+..-+. .-.|.+|-.+|+|.+|..+...|
T Consensus 933 ~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql 991 (1265)
T KOG1920|consen 933 PDSEKQKVIYEAYADHLREELMSDEAALMYERCGKL---------EKALKAYKECGDWREALSLAAQL 991 (1265)
T ss_pred cCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccH---------HHHHHHHHHhccHHHHHHHHHhh
Confidence 66666666555554 356666666666543221 22455666666666666655544
No 441
>KOG0159 consensus Cytochrome P450 CYP11/CYP12/CYP24/CYP27 subfamilies [Secondary metabolites biosynthesis, transport and catabolism]
Probab=20.29 E-value=9.6e+02 Score=24.75 Aligned_cols=63 Identities=19% Similarity=0.180 Sum_probs=44.6
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 047934 240 APNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRERGVEKAQSVIATLKEK 307 (344)
Q Consensus 240 ~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~~e~a~~l~~~M~~~ 307 (344)
+.+...+..|+. +.-+.++|...+-+|...|+..+..|...+|..++ ++.+.-.++++|..+.
T Consensus 298 ~~~~~l~~~L~~---~~l~~k~~~~~~~dll~aGvDTTs~tl~~~Ly~La--rnP~~Q~~L~~Ei~~~ 360 (519)
T KOG0159|consen 298 EYTGSLLELLLR---KELSRKDAKANVMDLLAAGVDTTSNTLLWALYELA--RNPEVQQRLREEILAV 360 (519)
T ss_pred chhHHHHHHHHH---ccCCHHHHHHHHHHHHHHhccchHHHHHHHHHHHh--cChHHHHHHHHHHHhh
Confidence 434444444443 35678889999999999999888888888877665 5556666777776654
No 442
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=20.29 E-value=7.7e+02 Score=25.46 Aligned_cols=60 Identities=7% Similarity=0.180 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 047934 210 IYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEA 272 (344)
Q Consensus 210 tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~ 272 (344)
.|..|+.++ +.-+.++..++++++...- -....+..++++...+|-...+.-+.+.+...
T Consensus 348 ~f~~Lv~~l-r~l~~~~L~~l~~~~~~~~--~~~~~r~~~lDal~~aGT~~av~~i~~~I~~~ 407 (618)
T PF01347_consen 348 KFSRLVRLL-RTLSYEDLEELYKQLKSKS--KKEQARKIFLDALPQAGTNPAVKFIKDLIKSK 407 (618)
T ss_dssp HHHHHHHHH-TTS-HHHHHHHHHHHTTS-----HHHHHHHHHHHHHH-SHHHHHHHHHHHHTT
T ss_pred HHHHHHHHH-hcCCHHHHHHHHHHHHhhc--cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcC
Confidence 455555543 3334566666666664321 24556777777777777766665555555543
No 443
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=20.27 E-value=6.8e+02 Score=25.99 Aligned_cols=86 Identities=16% Similarity=0.108 Sum_probs=51.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 047934 150 NEPISEPPQEADEIFKKMKETGLIPN-----AVAMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKF 224 (344)
Q Consensus 150 ~~~~sg~~~~A~~lf~~M~~~gi~p~-----~~tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~ 224 (344)
.|.+.+++++|..++..|.=.-. +. ..++++.+.+...-.+....++.+...=..|....-.+.+..|.. .=.
T Consensus 417 ~yl~~~qi~eAi~lL~smnW~~~-g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algsF~ap~rpl~~~~~~ey~d-~V~ 494 (545)
T PF11768_consen 417 QYLRCDQIEEAINLLLSMNWNTM-GEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGSFYAPTRPLSDATVLEYRD-PVS 494 (545)
T ss_pred HHHhcCCHHHHHHHHHhCCcccc-HHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhhccCCCcCccHHHHHHHHH-HHH
Confidence 34457789999999998853211 11 124566666665555556666666555444554444455555554 334
Q ss_pred HHHHHHHHHHHHC
Q 047934 225 DDAKRIFRKMQSN 237 (344)
Q Consensus 225 e~A~~vf~~M~~~ 237 (344)
+-|+++|..|.+.
T Consensus 495 ~~aRRfFhhLLR~ 507 (545)
T PF11768_consen 495 DLARRFFHHLLRY 507 (545)
T ss_pred HHHHHHHHHHHHh
Confidence 5677888877753
No 444
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=20.03 E-value=3.1e+02 Score=24.96 Aligned_cols=80 Identities=15% Similarity=0.253 Sum_probs=60.2
Q ss_pred CHHHHHHHHHHHHHCCCCC----------CHHHHHHHHHHcC---------CHHHHHHHHHHHHHcCCC-CCHHHHHHHH
Q 047934 156 PPQEADEIFKKMKETGLIP----------NAVAMLDGLCKDG---------LIQEAMKLFGLMREKGTI-PEVVIYTAVV 215 (344)
Q Consensus 156 ~~~~A~~lf~~M~~~gi~p----------~~~tli~~~~k~g---------~~~~A~~lf~~M~~~g~~-pd~~tyn~LI 215 (344)
..|.|..++.+|-...++- ...++-.+|++.| +.+.-.++++...+.|++ -=.+.|.++|
T Consensus 136 ~vetAiaml~dmG~~SiKffPM~Gl~~leE~~avA~aca~~g~~lEPTGGIdl~Nf~~I~~i~ldaGv~kviPHIYssiI 215 (236)
T TIGR03581 136 PIETAIAMLKDMGGSSVKFFPMGGLKHLEEYAAVAKACAKHGFYLEPTGGIDLDNFEEIVQIALDAGVEKVIPHVYSSII 215 (236)
T ss_pred eHHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCCccCCCCCccHHhHHHHHHHHHHcCCCeeccccceecc
Confidence 6889999999987654431 1237899999988 456677777777888864 3457899999
Q ss_pred HHHHHcCCHHHHHHHHHHHH
Q 047934 216 DGFCKAQKFDDAKRIFRKMQ 235 (344)
Q Consensus 216 ~ay~k~g~~e~A~~vf~~M~ 235 (344)
+--...-+.+++.++|..|+
T Consensus 216 Dk~tG~TrpedV~~l~~~~k 235 (236)
T TIGR03581 216 DKETGNTRVEDVKQLLAIVK 235 (236)
T ss_pred ccccCCCCHHHHHHHHHHhh
Confidence 87666678999999998775
Done!