Query 047934
Match_columns 344
No_of_seqs 287 out of 2071
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 07:45:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047934.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047934hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g26_A Pentatricopeptide repea 100.0 2.4E-31 8.4E-36 267.1 24.1 180 147-326 32-223 (501)
2 4g26_A Pentatricopeptide repea 100.0 2.2E-29 7.4E-34 253.0 19.7 172 158-329 7-191 (501)
3 3spa_A Mtrpol, DNA-directed RN 99.8 1E-21 3.6E-26 206.6 8.5 148 175-327 129-286 (1134)
4 3spa_A Mtrpol, DNA-directed RN 99.8 2E-20 6.9E-25 196.9 13.2 120 205-324 124-247 (1134)
5 2xpi_A Anaphase-promoting comp 99.5 6.4E-13 2.2E-17 132.7 19.5 173 153-328 385-565 (597)
6 2xpi_A Anaphase-promoting comp 99.5 2.9E-12 9.9E-17 128.0 21.0 175 151-328 315-531 (597)
7 2vq2_A PILW, putative fimbrial 98.9 2.2E-07 7.4E-12 79.6 21.4 176 151-328 18-197 (225)
8 2ho1_A Type 4 fimbrial biogene 98.9 1.1E-07 3.7E-12 83.8 19.9 175 151-328 47-224 (252)
9 1w3b_A UDP-N-acetylglucosamine 98.9 1.3E-07 4.3E-12 89.3 20.3 141 184-328 214-354 (388)
10 2y4t_A DNAJ homolog subfamily 98.9 8.7E-08 3E-12 91.7 19.3 172 151-328 104-310 (450)
11 3mkr_A Coatomer subunit epsilo 98.9 1E-07 3.5E-12 88.0 18.7 166 153-328 77-249 (291)
12 1w3b_A UDP-N-acetylglucosamine 98.9 2.6E-07 8.9E-12 87.1 21.1 173 153-329 147-321 (388)
13 2y4t_A DNAJ homolog subfamily 98.9 1.2E-07 4.1E-12 90.7 18.5 174 150-328 35-226 (450)
14 2ho1_A Type 4 fimbrial biogene 98.8 4.5E-07 1.5E-11 79.8 20.8 155 151-307 81-238 (252)
15 3as5_A MAMA; tetratricopeptide 98.8 4.4E-07 1.5E-11 74.9 19.0 153 152-307 19-173 (186)
16 2q7f_A YRRB protein; TPR, prot 98.8 1.8E-07 6E-12 81.5 17.3 175 149-327 31-207 (243)
17 2fo7_A Synthetic consensus TPR 98.8 6.3E-07 2.1E-11 69.7 17.9 129 176-307 4-132 (136)
18 2vq2_A PILW, putative fimbrial 98.8 8.9E-07 3E-11 75.7 20.5 166 151-319 52-221 (225)
19 3uq3_A Heat shock protein STI1 98.8 4.3E-07 1.5E-11 79.5 17.2 176 151-328 15-222 (258)
20 1b89_A Protein (clathrin heavy 98.7 5.8E-10 2E-14 109.4 -1.6 152 150-328 41-192 (449)
21 2pl2_A Hypothetical conserved 98.7 2E-06 7E-11 75.2 21.4 172 152-328 16-200 (217)
22 1fch_A Peroxisomal targeting s 98.7 1.9E-06 6.6E-11 79.8 22.1 176 150-328 73-300 (368)
23 2q7f_A YRRB protein; TPR, prot 98.7 1.1E-06 3.9E-11 76.3 19.2 155 150-307 66-222 (243)
24 4eqf_A PEX5-related protein; a 98.7 7.1E-07 2.4E-11 83.2 18.4 174 151-327 75-295 (365)
25 1b89_A Protein (clathrin heavy 98.7 1.3E-08 4.3E-13 99.9 6.2 158 143-328 63-222 (449)
26 3hym_B Cell division cycle pro 98.7 2E-06 6.8E-11 78.0 20.4 175 150-328 31-208 (330)
27 3cv0_A Peroxisome targeting si 98.7 7.3E-07 2.5E-11 80.9 17.1 175 153-330 101-303 (327)
28 3vtx_A MAMA; tetratricopeptide 98.7 7.4E-06 2.5E-10 68.7 22.1 157 148-307 12-170 (184)
29 3hym_B Cell division cycle pro 98.7 2.3E-06 7.7E-11 77.7 19.8 152 154-307 103-265 (330)
30 1fch_A Peroxisomal targeting s 98.7 5.2E-07 1.8E-11 83.7 15.8 174 153-328 144-345 (368)
31 1xnf_A Lipoprotein NLPI; TPR, 98.7 1.6E-06 5.6E-11 76.7 18.3 153 151-307 15-173 (275)
32 4eqf_A PEX5-related protein; a 98.6 9.9E-07 3.4E-11 82.2 16.7 174 151-328 143-342 (365)
33 1ouv_A Conserved hypothetical 98.6 1.2E-05 4E-10 72.0 22.9 144 155-307 20-179 (273)
34 3cv0_A Peroxisome targeting si 98.6 1.5E-06 5E-11 78.8 16.5 151 151-303 148-311 (327)
35 3uq3_A Heat shock protein STI1 98.6 2.1E-06 7.1E-11 75.0 16.7 156 150-307 47-236 (258)
36 3mkr_A Coatomer subunit epsilo 98.6 1.7E-06 5.7E-11 79.8 16.6 148 152-307 112-264 (291)
37 2gw1_A Mitochondrial precursor 98.6 2.7E-06 9.2E-11 82.3 18.2 174 150-328 15-285 (514)
38 1ouv_A Conserved hypothetical 98.5 2.2E-05 7.5E-10 70.2 22.6 147 154-309 55-217 (273)
39 3as5_A MAMA; tetratricopeptide 98.5 5E-06 1.7E-10 68.4 16.1 147 178-328 13-159 (186)
40 3ieg_A DNAJ homolog subfamily 98.5 1.1E-05 3.9E-10 73.6 20.0 172 152-328 14-203 (359)
41 3u4t_A TPR repeat-containing p 98.5 1.1E-05 3.8E-10 71.4 19.0 156 150-307 12-171 (272)
42 3edt_B KLC 2, kinesin light ch 98.5 1.6E-06 5.6E-11 76.5 12.9 157 150-306 52-280 (283)
43 2fo7_A Synthetic consensus TPR 98.5 7.7E-06 2.6E-10 63.3 15.4 118 153-272 13-132 (136)
44 3nf1_A KLC 1, kinesin light ch 98.5 3E-06 1E-10 76.2 14.7 157 150-306 78-306 (311)
45 2gw1_A Mitochondrial precursor 98.5 9.1E-07 3.1E-11 85.6 11.8 171 153-328 201-387 (514)
46 2pl2_A Hypothetical conserved 98.5 3.3E-06 1.1E-10 73.9 14.4 148 152-305 50-212 (217)
47 3ieg_A DNAJ homolog subfamily 98.4 4E-05 1.4E-09 69.9 21.2 174 151-328 130-321 (359)
48 3nf1_A KLC 1, kinesin light ch 98.4 3.6E-06 1.2E-10 75.6 13.7 158 150-307 36-224 (311)
49 3edt_B KLC 2, kinesin light ch 98.4 6.1E-07 2.1E-11 79.3 8.2 154 154-307 14-198 (283)
50 1xnf_A Lipoprotein NLPI; TPR, 98.4 5.4E-05 1.9E-09 66.7 20.8 157 149-308 51-245 (275)
51 2ond_A Cleavage stimulation fa 98.4 2.1E-05 7E-10 72.4 18.2 167 157-328 80-256 (308)
52 2ond_A Cleavage stimulation fa 98.4 3.6E-05 1.2E-09 70.8 19.3 152 154-307 112-270 (308)
53 3fp2_A TPR repeat-containing p 98.3 1.9E-05 6.4E-10 77.0 17.1 155 150-307 252-407 (537)
54 4abn_A Tetratricopeptide repea 98.3 9.7E-06 3.3E-10 79.8 14.6 156 149-307 110-287 (474)
55 3fp2_A TPR repeat-containing p 98.3 1.9E-05 6.4E-10 77.0 16.1 169 155-328 216-393 (537)
56 4gyw_A UDP-N-acetylglucosamine 98.3 3.4E-05 1.1E-09 80.4 18.8 150 151-306 19-173 (723)
57 4i17_A Hypothetical protein; T 98.2 0.00016 5.5E-09 62.6 18.6 141 150-294 16-169 (228)
58 2vsy_A XCC0866; transferase, g 98.2 7E-05 2.4E-09 74.9 18.2 152 154-308 2-158 (568)
59 3vtx_A MAMA; tetratricopeptide 98.2 0.00027 9.1E-09 59.0 19.0 147 178-328 10-156 (184)
60 1na0_A Designed protein CTPR3; 98.1 0.00021 7.1E-09 54.5 16.7 93 178-272 14-106 (125)
61 1hh8_A P67PHOX, NCF-2, neutrop 98.1 0.00023 8E-09 60.6 18.5 125 179-308 12-151 (213)
62 3u4t_A TPR repeat-containing p 98.1 0.00011 3.7E-09 64.9 16.1 176 150-328 46-236 (272)
63 3qky_A Outer membrane assembly 98.1 0.00015 5.2E-09 64.4 16.2 157 150-307 24-224 (261)
64 2ooe_A Cleavage stimulation fa 98.1 0.00014 4.7E-09 71.9 17.5 170 154-328 292-478 (530)
65 4i17_A Hypothetical protein; T 98.0 0.00031 1.1E-08 60.8 17.7 146 178-327 12-167 (228)
66 1a17_A Serine/threonine protei 98.0 0.00049 1.7E-08 55.6 17.5 125 178-305 18-144 (166)
67 3mv2_B Coatomer subunit epsilo 98.0 0.00011 3.6E-09 68.8 15.0 142 160-306 85-239 (310)
68 1na0_A Designed protein CTPR3; 98.0 0.00028 9.6E-09 53.7 14.6 99 208-308 9-107 (125)
69 3mv2_B Coatomer subunit epsilo 98.0 0.00038 1.3E-08 65.0 17.5 149 153-307 112-282 (310)
70 3u3w_A Transcriptional activat 98.0 0.00023 8E-09 64.6 15.9 157 150-306 84-265 (293)
71 2yhc_A BAMD, UPF0169 lipoprote 98.0 0.00072 2.5E-08 58.9 18.5 154 151-308 14-214 (225)
72 4gyw_A UDP-N-acetylglucosamine 97.9 0.00043 1.5E-08 72.0 19.3 145 178-327 14-159 (723)
73 2xm6_A Protein corresponding t 97.9 0.002 6.9E-08 62.8 22.9 146 154-308 56-217 (490)
74 4abn_A Tetratricopeptide repea 97.9 0.0002 6.9E-09 70.3 15.4 167 157-328 84-273 (474)
75 2ooe_A Cleavage stimulation fa 97.9 0.00043 1.5E-08 68.3 17.9 152 154-307 334-492 (530)
76 2h6f_A Protein farnesyltransfe 97.9 0.00054 1.8E-08 65.8 18.0 172 152-327 108-288 (382)
77 3gw4_A Uncharacterized protein 97.9 8.3E-05 2.8E-09 62.6 10.7 152 153-306 4-175 (203)
78 3rjv_A Putative SEL1 repeat pr 97.9 0.00083 2.8E-08 58.2 17.4 155 154-314 31-204 (212)
79 2vyi_A SGTA protein; chaperone 97.9 0.00083 2.8E-08 51.4 15.5 113 178-293 17-129 (131)
80 1qqe_A Vesicular transport pro 97.9 0.00015 5E-09 66.2 12.9 156 151-306 47-227 (292)
81 2r5s_A Uncharacterized protein 97.9 0.00014 4.8E-09 60.9 11.6 150 153-306 18-172 (176)
82 2xm6_A Protein corresponding t 97.8 0.0026 8.8E-08 62.0 22.1 146 154-308 92-253 (490)
83 2qfc_A PLCR protein; TPR, HTH, 97.8 0.0011 3.6E-08 60.2 18.0 156 150-305 84-264 (293)
84 3urz_A Uncharacterized protein 97.8 0.00063 2.2E-08 58.7 15.5 159 152-320 15-197 (208)
85 3rjv_A Putative SEL1 repeat pr 97.8 0.00093 3.2E-08 57.9 16.0 142 159-307 4-158 (212)
86 1qqe_A Vesicular transport pro 97.7 0.00035 1.2E-08 63.6 13.2 142 156-309 32-189 (292)
87 4ga2_A E3 SUMO-protein ligase 97.7 0.00036 1.2E-08 57.2 12.0 135 152-292 8-148 (150)
88 3ulq_A Response regulator aspa 97.7 0.00063 2.1E-08 63.9 15.2 177 152-328 114-318 (383)
89 4a1s_A PINS, partner of inscut 97.7 0.00012 4.2E-09 68.8 10.1 179 150-328 57-278 (411)
90 2lni_A Stress-induced-phosphop 97.7 0.0012 4E-08 51.1 13.9 92 179-272 22-113 (133)
91 3q15_A PSP28, response regulat 97.7 0.0013 4.3E-08 61.8 16.6 177 152-328 112-315 (378)
92 2lni_A Stress-induced-phosphop 97.7 0.0011 3.8E-08 51.2 13.5 101 205-307 13-113 (133)
93 1p5q_A FKBP52, FK506-binding p 97.7 0.0019 6.3E-08 60.4 17.3 127 178-306 152-293 (336)
94 2pzi_A Probable serine/threoni 97.7 0.00032 1.1E-08 72.3 13.0 168 152-325 402-580 (681)
95 1hh8_A P67PHOX, NCF-2, neutrop 97.7 0.0011 3.6E-08 56.4 14.2 117 152-273 17-151 (213)
96 3qou_A Protein YBBN; thioredox 97.7 0.00078 2.7E-08 61.3 14.0 147 154-303 130-280 (287)
97 2e2e_A Formate-dependent nitri 97.7 0.00069 2.4E-08 56.2 12.6 121 150-272 19-144 (177)
98 3q49_B STIP1 homology and U bo 97.6 0.0024 8E-08 50.1 15.0 97 207-305 8-104 (137)
99 2vyi_A SGTA protein; chaperone 97.6 0.0016 5.4E-08 49.8 13.5 114 207-323 11-124 (131)
100 1elr_A TPR2A-domain of HOP; HO 97.6 0.0016 5.6E-08 49.8 13.5 94 178-272 9-108 (131)
101 2e2e_A Formate-dependent nitri 97.6 0.00091 3.1E-08 55.4 12.7 122 184-308 21-145 (177)
102 1elr_A TPR2A-domain of HOP; HO 97.6 0.0028 9.7E-08 48.4 14.6 109 208-319 4-118 (131)
103 2dba_A Smooth muscle cell asso 97.6 0.0057 2E-07 48.1 16.7 90 179-271 34-127 (148)
104 2h6f_A Protein farnesyltransfe 97.6 0.0016 5.3E-08 62.5 15.6 128 179-309 103-231 (382)
105 1elw_A TPR1-domain of HOP; HOP 97.6 0.0024 8.2E-08 47.9 13.8 95 210-306 6-100 (118)
106 3ro2_A PINS homolog, G-protein 97.6 0.00069 2.4E-08 60.6 12.2 155 151-306 15-211 (338)
107 3ro2_A PINS homolog, G-protein 97.6 0.00022 7.7E-09 63.8 8.9 151 157-307 159-332 (338)
108 4gco_A Protein STI-1; structur 97.5 0.0021 7.3E-08 51.0 13.6 90 181-272 21-110 (126)
109 3ro3_A PINS homolog, G-protein 97.5 0.00095 3.3E-08 52.9 11.4 129 178-306 14-157 (164)
110 3sf4_A G-protein-signaling mod 97.5 0.0003 1E-08 65.4 9.5 151 157-307 163-336 (406)
111 4gco_A Protein STI-1; structur 97.5 0.0035 1.2E-07 49.7 14.6 97 209-307 14-110 (126)
112 3ulq_A Response regulator aspa 97.5 0.00079 2.7E-08 63.2 12.4 150 154-306 197-367 (383)
113 3gyz_A Chaperone protein IPGC; 97.5 0.0018 6E-08 53.7 13.1 92 179-272 42-133 (151)
114 2ifu_A Gamma-SNAP; membrane fu 97.5 0.0015 5E-08 59.9 13.6 152 153-305 48-222 (307)
115 3u3w_A Transcriptional activat 97.5 0.0017 5.7E-08 58.9 13.9 149 179-327 81-250 (293)
116 3sz7_A HSC70 cochaperone (SGT) 97.5 0.0027 9.1E-08 52.1 13.9 93 178-272 16-108 (164)
117 3upv_A Heat shock protein STI1 97.5 0.0035 1.2E-07 48.7 14.0 87 182-270 13-99 (126)
118 3sf4_A G-protein-signaling mod 97.5 0.00085 2.9E-08 62.3 12.0 157 150-307 18-216 (406)
119 4a1s_A PINS, partner of inscut 97.5 0.00045 1.5E-08 64.9 9.9 179 150-328 95-318 (411)
120 2vsy_A XCC0866; transferase, g 97.5 0.002 6.9E-08 64.1 15.2 137 186-326 2-138 (568)
121 2kck_A TPR repeat; tetratricop 97.5 0.0011 3.6E-08 49.5 10.2 91 179-271 12-105 (112)
122 1elw_A TPR1-domain of HOP; HOP 97.5 0.0084 2.9E-07 44.7 15.5 94 177-272 8-101 (118)
123 2vgx_A Chaperone SYCD; alterna 97.4 0.0028 9.5E-08 51.7 13.4 91 179-271 27-117 (148)
124 2xcb_A PCRH, regulatory protei 97.4 0.0031 1E-07 50.6 13.5 92 179-272 24-115 (142)
125 3upv_A Heat shock protein STI1 97.4 0.0086 2.9E-07 46.4 15.8 98 208-307 4-101 (126)
126 1hz4_A MALT regulatory protein 97.4 0.0052 1.8E-07 57.0 16.9 155 153-307 26-203 (373)
127 2ifu_A Gamma-SNAP; membrane fu 97.4 0.00079 2.7E-08 61.7 10.9 140 154-306 29-183 (307)
128 2fbn_A 70 kDa peptidylprolyl i 97.4 0.0048 1.6E-07 52.2 15.1 128 178-307 43-186 (198)
129 3qky_A Outer membrane assembly 97.4 0.004 1.4E-07 55.0 14.9 127 178-307 20-177 (261)
130 2kck_A TPR repeat; tetratricop 97.4 0.0036 1.2E-07 46.5 12.5 99 208-307 6-106 (112)
131 3sz7_A HSC70 cochaperone (SGT) 97.4 0.0091 3.1E-07 48.8 15.9 99 207-307 10-108 (164)
132 3k9i_A BH0479 protein; putativ 97.4 0.00024 8.1E-09 55.3 5.7 83 187-270 4-88 (117)
133 4ga2_A E3 SUMO-protein ligase 97.4 0.00068 2.3E-08 55.5 8.7 134 185-325 9-146 (150)
134 3q49_B STIP1 homology and U bo 97.3 0.0067 2.3E-07 47.3 14.1 93 178-272 14-106 (137)
135 3qou_A Protein YBBN; thioredox 97.3 0.0021 7.1E-08 58.5 12.6 146 178-327 122-269 (287)
136 3gyz_A Chaperone protein IPGC; 97.3 0.0041 1.4E-07 51.4 13.3 99 208-308 36-134 (151)
137 1xi4_A Clathrin heavy chain; a 97.3 0.0087 3E-07 66.0 18.8 163 150-329 1143-1330(1630)
138 1hz4_A MALT regulatory protein 97.3 0.0047 1.6E-07 57.3 14.9 155 152-306 104-281 (373)
139 3gw4_A Uncharacterized protein 97.3 0.0024 8.1E-08 53.4 11.7 123 183-306 2-135 (203)
140 4f3v_A ESX-1 secretion system 97.3 0.0034 1.2E-07 57.8 13.3 140 179-323 108-251 (282)
141 2xcb_A PCRH, regulatory protei 97.3 0.0064 2.2E-07 48.7 13.6 97 209-307 19-115 (142)
142 1a17_A Serine/threonine protei 97.3 0.0088 3E-07 47.9 14.5 98 208-307 13-110 (166)
143 2qfc_A PLCR protein; TPR, HTH, 97.2 0.016 5.6E-07 52.2 17.4 150 178-327 80-250 (293)
144 2vgx_A Chaperone SYCD; alterna 97.2 0.0071 2.4E-07 49.2 13.6 99 207-307 20-118 (148)
145 4e6h_A MRNA 3'-END-processing 97.2 0.0018 6.2E-08 66.8 12.0 169 154-327 391-588 (679)
146 1xi4_A Clathrin heavy chain; a 97.2 0.0061 2.1E-07 67.1 16.4 111 179-304 1111-1221(1630)
147 4gcn_A Protein STI-1; structur 97.2 0.0085 2.9E-07 47.3 13.6 95 211-306 11-111 (127)
148 4b4t_Q 26S proteasome regulato 97.2 0.014 4.8E-07 55.0 17.4 155 152-306 15-203 (434)
149 2xev_A YBGF; tetratricopeptide 97.2 0.017 5.7E-07 44.5 14.8 92 179-272 8-105 (129)
150 2fbn_A 70 kDa peptidylprolyl i 97.2 0.0014 4.7E-08 55.7 8.7 128 178-307 9-151 (198)
151 3q15_A PSP28, response regulat 97.2 0.0066 2.3E-07 56.8 14.3 175 150-328 150-351 (378)
152 2dba_A Smooth muscle cell asso 97.1 0.011 3.6E-07 46.4 13.4 99 206-307 26-128 (148)
153 2r5s_A Uncharacterized protein 97.1 0.0018 6.2E-08 53.9 9.1 147 176-327 9-158 (176)
154 1hxi_A PEX5, peroxisome target 97.1 0.007 2.4E-07 47.5 12.1 94 176-271 20-113 (121)
155 3k9i_A BH0479 protein; putativ 97.1 0.00096 3.3E-08 51.7 6.8 110 221-331 3-115 (117)
156 2xev_A YBGF; tetratricopeptide 97.1 0.0097 3.3E-07 45.9 12.7 91 214-307 8-105 (129)
157 3urz_A Uncharacterized protein 97.1 0.0089 3E-07 51.3 13.3 110 180-293 11-137 (208)
158 4gcn_A Protein STI-1; structur 97.1 0.0096 3.3E-07 47.0 12.3 101 179-282 14-120 (127)
159 3n71_A Histone lysine methyltr 97.0 0.0037 1.3E-07 62.0 11.5 127 181-307 317-464 (490)
160 1wao_1 Serine/threonine protei 97.0 0.0044 1.5E-07 60.9 12.0 119 148-268 13-135 (477)
161 2yhc_A BAMD, UPF0169 lipoprote 97.0 0.014 4.8E-07 50.5 14.0 149 179-329 10-200 (225)
162 1hxi_A PEX5, peroxisome target 97.0 0.011 3.8E-07 46.3 11.9 94 212-307 21-114 (121)
163 1klx_A Cysteine rich protein B 96.9 0.012 4.1E-07 47.4 11.8 110 156-273 10-127 (138)
164 1klx_A Cysteine rich protein B 96.9 0.039 1.3E-06 44.3 14.6 113 187-310 9-129 (138)
165 3ro3_A PINS homolog, G-protein 96.8 0.0086 3E-07 47.1 9.9 120 152-271 20-157 (164)
166 2c2l_A CHIP, carboxy terminus 96.8 0.031 1.1E-06 50.4 14.6 93 178-272 9-101 (281)
167 1wao_1 Serine/threonine protei 96.7 0.0091 3.1E-07 58.7 11.2 119 182-302 15-134 (477)
168 1p5q_A FKBP52, FK506-binding p 96.7 0.028 9.4E-07 52.3 13.8 119 207-327 146-278 (336)
169 4e6h_A MRNA 3'-END-processing 96.7 0.02 6.8E-07 59.1 13.8 172 154-328 356-556 (679)
170 1ihg_A Cyclophilin 40; ppiase 96.7 0.028 9.7E-07 53.2 14.0 121 176-298 226-361 (370)
171 1kt0_A FKBP51, 51 kDa FK506-bi 96.7 0.033 1.1E-06 54.1 14.8 127 178-307 273-415 (457)
172 2pzi_A Probable serine/threoni 96.6 0.012 3.9E-07 60.5 11.5 141 184-328 402-549 (681)
173 4f3v_A ESX-1 secretion system 96.6 0.024 8.1E-07 52.1 12.3 117 154-273 115-238 (282)
174 3rkv_A Putative peptidylprolyl 96.5 0.034 1.2E-06 45.1 12.0 92 179-271 17-125 (162)
175 3rkv_A Putative peptidylprolyl 96.5 0.081 2.8E-06 42.8 14.3 89 218-307 21-126 (162)
176 2c2l_A CHIP, carboxy terminus 96.5 0.055 1.9E-06 48.8 14.0 86 151-237 14-101 (281)
177 4g1t_A Interferon-induced prot 96.4 0.069 2.4E-06 50.7 15.0 152 154-307 226-401 (472)
178 3e4b_A ALGK; tetratricopeptide 96.3 0.14 4.9E-06 49.4 16.9 80 186-273 264-352 (452)
179 3n71_A Histone lysine methyltr 96.3 0.019 6.3E-07 56.9 10.5 122 151-272 319-464 (490)
180 3e4b_A ALGK; tetratricopeptide 96.3 0.18 6.2E-06 48.7 17.5 143 156-310 194-354 (452)
181 3dra_A Protein farnesyltransfe 96.0 0.14 4.7E-06 47.4 14.5 150 155-307 124-287 (306)
182 2kat_A Uncharacterized protein 96.0 0.072 2.5E-06 40.4 10.4 79 191-271 3-81 (115)
183 2l6j_A TPR repeat-containing p 95.9 0.034 1.2E-06 41.3 8.3 65 207-272 3-67 (111)
184 4g1t_A Interferon-induced prot 95.9 0.085 2.9E-06 50.1 13.0 123 187-312 227-368 (472)
185 1na3_A Designed protein CTPR2; 95.9 0.15 5.1E-06 36.2 11.5 63 209-272 10-72 (91)
186 2kat_A Uncharacterized protein 95.9 0.12 4E-06 39.1 11.3 62 243-305 19-80 (115)
187 2hr2_A Hypothetical protein; a 95.9 0.41 1.4E-05 39.9 15.3 61 245-305 59-129 (159)
188 1ihg_A Cyclophilin 40; ppiase 95.8 0.14 4.6E-06 48.5 13.5 98 209-307 224-336 (370)
189 1kt0_A FKBP51, 51 kDa FK506-bi 95.8 0.13 4.4E-06 49.9 13.6 100 207-307 267-380 (457)
190 2hr2_A Hypothetical protein; a 95.6 0.15 5.2E-06 42.6 11.5 107 179-285 17-149 (159)
191 2if4_A ATFKBP42; FKBP-like, al 95.6 0.024 8.1E-07 52.8 7.2 123 179-306 185-327 (338)
192 4b4t_Q 26S proteasome regulato 95.5 0.27 9.2E-06 46.0 14.4 157 150-306 64-244 (434)
193 3qwp_A SET and MYND domain-con 95.3 0.11 3.6E-06 50.5 11.2 91 180-270 294-398 (429)
194 3ma5_A Tetratricopeptide repea 95.3 0.11 3.9E-06 38.7 9.1 64 207-271 6-69 (100)
195 1na3_A Designed protein CTPR2; 95.1 0.42 1.4E-05 33.7 11.5 77 178-256 14-90 (91)
196 2l6j_A TPR repeat-containing p 95.1 0.023 7.8E-07 42.3 4.6 83 178-263 9-98 (111)
197 3ma5_A Tetratricopeptide repea 95.1 0.17 5.8E-06 37.7 9.4 65 242-307 6-70 (100)
198 3qww_A SET and MYND domain-con 94.9 0.078 2.7E-06 51.6 8.9 85 186-270 311-409 (433)
199 3qwp_A SET and MYND domain-con 94.9 0.16 5.3E-06 49.3 10.9 93 214-306 293-399 (429)
200 3qww_A SET and MYND domain-con 94.7 0.2 6.7E-06 48.7 11.2 87 220-306 310-410 (433)
201 3mkq_A Coatomer beta'-subunit; 94.7 0.31 1.1E-05 49.7 13.1 83 207-304 680-762 (814)
202 2if4_A ATFKBP42; FKBP-like, al 94.4 0.17 5.8E-06 46.9 9.6 96 209-307 180-293 (338)
203 1wy6_A Hypothetical protein ST 94.3 1.4 4.6E-05 36.2 13.2 85 220-310 73-157 (172)
204 2uy1_A Cleavage stimulation fa 94.2 0.94 3.2E-05 44.4 15.0 92 209-304 287-380 (493)
205 2uy1_A Cleavage stimulation fa 94.2 1 3.5E-05 44.2 15.2 119 179-306 292-412 (493)
206 1dce_A Protein (RAB geranylger 93.9 2.9 0.0001 41.7 18.1 161 156-320 44-233 (567)
207 3mkq_A Coatomer beta'-subunit; 93.7 0.14 4.9E-06 52.2 8.3 108 177-302 633-747 (814)
208 3dra_A Protein farnesyltransfe 93.3 4.8 0.00016 36.9 18.4 156 157-316 49-223 (306)
209 1zu2_A Mitochondrial import re 93.2 0.76 2.6E-05 38.2 10.4 114 185-308 14-148 (158)
210 2kc7_A BFR218_protein; tetratr 92.7 0.94 3.2E-05 32.7 9.4 53 218-271 10-63 (99)
211 2kc7_A BFR218_protein; tetratr 92.6 0.96 3.3E-05 32.6 9.3 58 179-237 6-64 (99)
212 1dce_A Protein (RAB geranylger 92.5 6.4 0.00022 39.2 18.0 120 188-310 44-176 (567)
213 3q7a_A Farnesyltransferase alp 92.2 7.6 0.00026 36.4 17.6 159 156-318 69-247 (349)
214 3mkq_B Coatomer subunit alpha; 91.4 5.8 0.0002 33.5 14.9 51 178-234 10-60 (177)
215 3dss_A Geranylgeranyl transfer 91.4 5.2 0.00018 37.1 14.9 15 157-171 126-140 (331)
216 3q7a_A Farnesyltransferase alp 91.1 10 0.00034 35.5 18.0 146 153-317 49-205 (349)
217 3mkq_B Coatomer subunit alpha; 90.5 5.4 0.00018 33.7 12.7 124 154-304 18-141 (177)
218 1pc2_A Mitochondria fission pr 89.8 2.8 9.5E-05 34.6 10.2 82 189-272 14-100 (152)
219 1zu2_A Mitochondrial import re 88.2 1.2 4.2E-05 37.0 6.9 102 219-325 13-136 (158)
220 3ly7_A Transcriptional activat 87.9 14 0.00048 34.9 14.9 123 188-316 214-346 (372)
221 2ff4_A Probable regulatory pro 87.6 2.9 9.8E-05 39.6 10.1 68 212-280 175-247 (388)
222 2v5f_A Prolyl 4-hydroxylase su 87.4 4.5 0.00015 30.1 9.3 65 207-271 4-74 (104)
223 3ly7_A Transcriptional activat 86.2 5.2 0.00018 37.9 10.8 121 156-282 214-347 (372)
224 2ff4_A Probable regulatory pro 85.4 3.2 0.00011 39.2 9.2 70 178-248 176-250 (388)
225 3dss_A Geranylgeranyl transfer 85.4 23 0.00078 32.7 19.5 147 157-307 46-222 (331)
226 1pc2_A Mitochondria fission pr 85.3 7 0.00024 32.1 10.0 80 156-237 13-100 (152)
227 2v5f_A Prolyl 4-hydroxylase su 85.3 7.6 0.00026 28.8 9.7 66 242-307 4-75 (104)
228 3bee_A Putative YFRE protein; 84.6 8.2 0.00028 28.4 9.4 65 207-272 5-72 (93)
229 1v54_E Cytochrome C oxidase po 81.6 4.7 0.00016 31.0 6.8 48 224-271 26-73 (109)
230 3u64_A Protein TP_0956; tetrat 80.7 24 0.00081 32.3 12.4 105 190-304 180-295 (301)
231 4h7y_A Dual specificity protei 79.3 12 0.00042 30.8 9.1 63 256-319 73-135 (161)
232 1nzn_A CGI-135 protein, fissio 77.8 9.6 0.00033 30.3 7.8 21 251-271 82-102 (126)
233 3bee_A Putative YFRE protein; 77.2 19 0.00064 26.3 9.4 67 241-308 4-73 (93)
234 3u64_A Protein TP_0956; tetrat 77.1 20 0.00067 32.8 10.7 95 225-321 180-285 (301)
235 1v54_E Cytochrome C oxidase po 76.2 11 0.00037 29.0 7.3 63 188-251 25-87 (109)
236 1wy6_A Hypothetical protein ST 74.3 20 0.0007 29.3 8.8 119 154-275 20-157 (172)
237 4gns_B Protein CSD3, chitin bi 73.8 63 0.0022 33.4 14.8 126 178-305 253-398 (754)
238 4h7y_A Dual specificity protei 72.5 39 0.0013 27.8 10.9 107 177-286 17-136 (161)
239 2y69_E Cytochrome C oxidase su 69.1 14 0.00048 29.9 6.8 50 223-272 68-117 (152)
240 4b4t_R RPN7, 26S proteasome re 68.2 37 0.0013 32.2 11.1 124 156-281 109-246 (429)
241 1nzn_A CGI-135 protein, fissio 67.9 27 0.00094 27.6 8.3 84 222-307 15-103 (126)
242 2y69_E Cytochrome C oxidase su 66.1 22 0.00074 28.8 7.3 63 188-251 68-130 (152)
243 3txn_A 26S proteasome regulato 65.2 94 0.0032 29.4 14.0 157 179-338 105-281 (394)
244 3rjo_A Endoplasmic reticulum a 63.0 1E+02 0.0035 29.0 14.7 78 157-238 216-297 (419)
245 4b4t_R RPN7, 26S proteasome re 61.6 47 0.0016 31.5 10.3 97 209-307 132-237 (429)
246 4gns_B Protein CSD3, chitin bi 61.0 22 0.00075 36.8 8.2 111 157-269 265-397 (754)
247 2p58_C Putative type III secre 60.0 40 0.0014 25.8 7.4 78 188-273 22-99 (116)
248 4b4t_P 26S proteasome regulato 59.9 59 0.002 31.1 10.7 156 179-334 143-314 (445)
249 1k1a_A B-cell lymphoma 3-encod 56.9 19 0.00064 30.1 6.0 139 154-301 19-170 (241)
250 2uwj_G Type III export protein 56.7 39 0.0013 25.8 6.8 78 188-273 21-98 (115)
251 2d2s_A Exocyst complex compone 49.8 98 0.0033 26.9 9.6 90 179-271 24-119 (235)
252 3esl_A Checkpoint serine/threo 47.8 1.3E+02 0.0043 25.8 9.6 74 204-277 73-149 (202)
253 2d2s_A Exocyst complex compone 47.6 1.4E+02 0.0048 25.9 11.7 80 154-236 31-119 (235)
254 3lpz_A GET4 (YOR164C homolog); 47.4 59 0.002 30.1 8.0 18 214-231 41-58 (336)
255 4fke_A Aminopeptidase N; zinc 45.9 2E+02 0.0067 30.2 12.8 77 157-236 705-786 (909)
256 4b4t_P 26S proteasome regulato 45.5 2E+02 0.007 27.2 15.9 153 154-306 29-246 (445)
257 2xdt_A Endoplasmic reticulum a 45.5 2.5E+02 0.0085 29.4 13.5 76 157-236 699-778 (897)
258 2nsz_A Programmed cell death p 45.2 68 0.0023 25.1 7.1 65 211-276 10-76 (129)
259 1yii_A Annexin A5, annexin V, 43.2 1.9E+02 0.0065 26.2 12.1 156 157-320 17-197 (320)
260 1k1a_A B-cell lymphoma 3-encod 43.2 22 0.00074 29.7 4.1 88 178-269 11-102 (241)
261 4fhn_B Nucleoporin NUP120; pro 42.0 2.1E+02 0.0071 30.8 12.5 113 179-294 848-987 (1139)
262 2wpv_A GET4, UPF0363 protein Y 40.9 1.1E+02 0.0036 28.0 8.6 18 214-231 39-56 (312)
263 2ion_A PDCD4, programmed cell 39.8 52 0.0018 26.7 5.7 70 210-280 11-82 (152)
264 3t8k_A Uncharacterized protein 39.7 21 0.00073 29.4 3.5 154 154-311 16-184 (186)
265 2p58_C Putative type III secre 39.1 78 0.0027 24.2 6.0 76 156-238 22-99 (116)
266 3t8k_A Uncharacterized protein 37.1 43 0.0015 27.5 5.0 128 181-312 11-148 (186)
267 1w3w_A Annexin A8; coagulation 37.0 2.4E+02 0.0083 25.6 10.8 156 157-320 24-205 (327)
268 2fe3_A Peroxide operon regulat 36.5 93 0.0032 24.6 6.7 59 166-224 12-72 (145)
269 2uwj_G Type III export protein 35.4 76 0.0026 24.2 5.4 76 156-238 21-98 (115)
270 2ion_A PDCD4, programmed cell 34.8 1.6E+02 0.0055 23.6 8.0 62 177-239 13-76 (152)
271 3ljn_A Hypothetical protein; a 34.7 56 0.0019 29.4 5.8 59 178-240 55-113 (364)
272 2wvi_A Mitotic checkpoint seri 34.7 1.3E+02 0.0046 24.6 7.5 73 204-279 59-132 (164)
273 2wvi_A Mitotic checkpoint seri 34.1 1.6E+02 0.0053 24.2 7.8 52 262-313 79-131 (164)
274 2xig_A Ferric uptake regulatio 33.9 1E+02 0.0035 24.6 6.6 60 165-224 16-77 (150)
275 1mzb_A Ferric uptake regulatio 33.9 80 0.0027 24.6 5.9 58 167-224 9-69 (136)
276 2wpv_A GET4, UPF0363 protein Y 33.6 2.7E+02 0.0093 25.2 14.4 23 242-264 133-155 (312)
277 4fhn_B Nucleoporin NUP120; pro 33.4 2.8E+02 0.0094 29.8 11.8 109 151-262 852-990 (1139)
278 3hra_A Ankyrin repeat family p 33.3 25 0.00087 28.4 2.9 14 218-231 79-92 (201)
279 2p1h_A APAF-1, apoptotic prote 33.3 1.3E+02 0.0046 21.6 7.5 37 222-262 50-86 (94)
280 1wdy_A 2-5A-dependent ribonucl 33.0 28 0.00095 29.6 3.2 133 162-302 86-240 (285)
281 2rfa_A Transient receptor pote 32.8 89 0.0031 25.7 6.4 124 178-311 39-184 (232)
282 3se6_A Endoplasmic reticulum a 32.6 4.7E+02 0.016 27.6 14.3 29 209-237 819-847 (967)
283 3txn_A 26S proteasome regulato 32.5 2.2E+02 0.0077 26.7 9.7 151 154-305 32-208 (394)
284 3bu8_A Telomeric repeat-bindin 32.4 80 0.0027 27.5 5.8 47 156-202 87-143 (235)
285 3ygs_P Procaspase 9; apoptosis 32.4 93 0.0032 22.9 5.7 36 188-227 52-87 (97)
286 2ii2_A Alpha-11 giardin; helix 32.3 2.2E+02 0.0074 25.7 9.3 161 158-326 79-267 (310)
287 4g8k_A 2-5A-dependent ribonucl 31.7 46 0.0016 29.6 4.6 105 194-313 220-329 (337)
288 2of3_A ZYG-9; multifunctional 31.4 2.2E+02 0.0075 25.2 8.9 123 195-334 114-246 (266)
289 1wdy_A 2-5A-dependent ribonucl 31.1 35 0.0012 29.0 3.5 139 162-312 53-213 (285)
290 4fke_A Aminopeptidase N; zinc 30.7 3.6E+02 0.012 28.2 11.8 89 179-272 692-787 (909)
291 2rfa_A Transient receptor pote 30.2 47 0.0016 27.5 4.1 119 178-305 77-221 (232)
292 2fu4_A Ferric uptake regulatio 30.0 1.3E+02 0.0046 20.7 6.1 31 262-292 36-66 (83)
293 2etb_A Transient receptor pote 29.6 25 0.00086 29.9 2.3 119 178-302 4-157 (256)
294 4a1g_A Mitotic checkpoint seri 29.5 1.8E+02 0.0061 23.6 7.3 50 227-276 84-134 (152)
295 1zbp_A Hypothetical protein VP 29.2 1.7E+02 0.0059 26.1 7.8 55 217-272 6-60 (273)
296 2hyv_A Annexin A2; calcium-bin 27.9 3.3E+02 0.011 24.4 10.2 156 157-320 5-186 (308)
297 3pvs_A Replication-associated 27.7 3.1E+02 0.011 25.9 10.0 62 249-310 258-327 (447)
298 2w57_A Ferric uptake regulatio 27.4 1E+02 0.0035 24.6 5.5 58 166-223 7-67 (150)
299 3eyy_A Putative iron uptake re 27.1 99 0.0034 24.5 5.4 56 166-222 9-66 (145)
300 4a1g_A Mitotic checkpoint seri 26.5 2.1E+02 0.0071 23.1 7.2 55 260-314 82-137 (152)
301 1zbp_A Hypothetical protein VP 26.0 1.6E+02 0.0054 26.4 6.9 116 181-307 5-129 (273)
302 2nsz_A Programmed cell death p 25.9 2.3E+02 0.0079 21.9 9.4 63 177-240 11-75 (129)
303 2fu4_A Ferric uptake regulatio 25.7 1.7E+02 0.0057 20.2 6.5 32 226-257 35-66 (83)
304 1n00_A Annexin GH1; membrane-b 25.6 1.6E+02 0.0055 26.7 7.2 158 158-321 20-200 (321)
305 2zhj_A Annexin A4; zynogen gra 25.5 3.6E+02 0.012 24.3 9.5 157 158-320 21-200 (322)
306 1dm5_A Annexin XII E105K mutan 24.9 3.5E+02 0.012 24.3 9.3 156 157-320 15-195 (315)
307 3twr_A Tankyrase-2; ankyrin re 24.8 46 0.0016 25.9 2.9 119 178-312 10-135 (165)
308 4aez_C MAD3, mitotic spindle c 24.6 1.5E+02 0.0052 25.7 6.3 51 226-276 132-183 (223)
309 2qq8_A TBC1 domain family memb 24.0 1.9E+02 0.0066 26.1 7.4 45 229-273 214-258 (334)
310 3o48_A Mitochondria fission 1 23.8 2.7E+02 0.0093 22.0 10.1 23 284-306 84-106 (134)
311 3eu9_A Huntingtin-interacting 23.8 37 0.0013 28.0 2.3 8 288-295 184-191 (240)
312 3jxi_A Vanilloid receptor-rela 23.3 24 0.00083 30.0 1.0 120 178-302 7-161 (260)
313 1yii_A Annexin A5, annexin V, 23.0 4.1E+02 0.014 23.8 13.7 157 158-320 90-272 (320)
314 1dm5_A Annexin XII E105K mutan 23.0 3.5E+02 0.012 24.3 9.0 25 295-321 247-271 (315)
315 1ug3_A EIF4GI, eukaryotic prot 22.3 77 0.0026 29.0 4.3 21 179-199 17-37 (339)
316 3ffl_A Anaphase-promoting comp 22.0 3.3E+02 0.011 22.3 9.9 24 284-307 128-151 (167)
317 3eiq_C Programmed cell death p 21.7 1.5E+02 0.0051 27.6 6.1 80 245-325 219-300 (358)
318 3kea_A K1L; tropism, ANK repea 21.7 1.4E+02 0.0047 25.8 5.8 136 164-313 78-223 (285)
319 3qye_A TBC1 domain family memb 21.6 3.2E+02 0.011 24.4 8.4 45 229-273 209-253 (331)
320 3eu9_A Huntingtin-interacting 21.4 52 0.0018 27.0 2.7 122 154-292 19-154 (240)
321 2yru_A Steroid receptor RNA ac 21.0 2.3E+02 0.0078 21.9 6.1 40 231-270 49-88 (118)
322 3hra_A Ankyrin repeat family p 20.9 51 0.0018 26.4 2.5 8 267-274 162-169 (201)
323 3rjo_A Endoplasmic reticulum a 20.8 5E+02 0.017 24.0 14.4 88 178-274 202-298 (419)
324 4evf_A Alpha-1 giardin, giardi 20.8 4.4E+02 0.015 23.3 9.3 75 158-236 6-88 (295)
325 3esl_A Checkpoint serine/threo 20.6 3.9E+02 0.013 22.6 12.5 68 245-313 82-150 (202)
326 3v31_A Ankyrin repeat family A 20.4 1.5E+02 0.0051 22.8 5.3 116 178-306 38-160 (167)
No 1
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.98 E-value=2.4e-31 Score=267.14 Aligned_cols=180 Identities=14% Similarity=0.137 Sum_probs=171.5
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHcCC---------HHHHHHHHHHHHHcCCCCCHHHHHHH
Q 047934 147 PNRNEPISEPPQEADEIFKKMKETGLIPNA---VAMLDGLCKDGL---------IQEAMKLFGLMREKGTIPEVVIYTAV 214 (344)
Q Consensus 147 ~~~~~~~sg~~~~A~~lf~~M~~~gi~p~~---~tli~~~~k~g~---------~~~A~~lf~~M~~~g~~pd~~tyn~L 214 (344)
.++.|.+.|++++|+++|++|.+.|+.|+. ++||.+|++.+. +++|+++|++|.+.|+.||..|||+|
T Consensus 32 ~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~l 111 (501)
T 4g26_A 32 KLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNG 111 (501)
T ss_dssp HHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 345778899999999999999999999985 469999998764 78999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 047934 215 VDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRERGV 294 (344)
Q Consensus 215 I~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~~ 294 (344)
|.+|++.|++++|+++|++|.+.|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..||++||.+|++.|++
T Consensus 112 I~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~ 191 (501)
T 4g26_A 112 ARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNA 191 (501)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHCCCcccHHHHHHHHhccCCC
Q 047934 295 EKAQSVIATLKEKGFLVNDKAVREFLDKKAPF 326 (344)
Q Consensus 295 e~a~~l~~~M~~~Gi~p~~~~~~~Ll~~yak~ 326 (344)
++|.+++++|.+.|+.|+..||+.|++.|+..
T Consensus 192 d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 192 DKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 99999999999999999999999999988753
No 2
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=2.2e-29 Score=252.99 Aligned_cols=172 Identities=19% Similarity=0.265 Sum_probs=149.2
Q ss_pred HHHHHHHHHHHHCCCCCCH----HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC---------H
Q 047934 158 QEADEIFKKMKETGLIPNA----VAMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQK---------F 224 (344)
Q Consensus 158 ~~A~~lf~~M~~~gi~p~~----~tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~---------~ 224 (344)
..+..++.++.++++..+. ..+|++|++.|++++|+++|++|.+.|++||.+|||+||.+|++.+. +
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 4667777888888876443 36799999999999999999999999999999999999999998765 6
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 047934 225 DDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRERGVEKAQSVIATL 304 (344)
Q Consensus 225 e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~~e~a~~l~~~M 304 (344)
++|.++|++|.+.|+.||.+|||+||.+|++.|++++|.++|++|.+.|+.||..||++||.+|++.|++++|.++|++|
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHCCCcccHHHHHHHHhccCCCChH
Q 047934 305 KEKGFLVNDKAVREFLDKKAPFSSS 329 (344)
Q Consensus 305 ~~~Gi~p~~~~~~~Ll~~yak~g~~ 329 (344)
.+.|+.||..+|++||++|++.|..
T Consensus 167 ~~~G~~Pd~~ty~~Li~~~~~~g~~ 191 (501)
T 4g26_A 167 VESEVVPEEPELAALLKVSMDTKNA 191 (501)
T ss_dssp HHTTCCCCHHHHHHHHHHHHHTTCH
T ss_pred HhcCCCCCHHHHHHHHHHHhhCCCH
Confidence 9999999999999999999999974
No 3
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.84 E-value=1e-21 Score=206.61 Aligned_cols=148 Identities=15% Similarity=0.175 Sum_probs=127.4
Q ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH---HcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 047934 175 NAVAMLDGLCKDGLIQEAMKLFGLMR---EKGTIPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQ 251 (344)
Q Consensus 175 ~~~tli~~~~k~g~~~~A~~lf~~M~---~~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ 251 (344)
++++||++||+.|++++|.++|.+|. +.|+.||++|||+||++||+.|++++|.++|++|.+.|+.||++|||+||.
T Consensus 129 TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~ 208 (1134)
T 3spa_A 129 RLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQ 208 (1134)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 45689999999999999999998876 458999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccc------HHHHHHHHhccC
Q 047934 252 GLYKCNK-LEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRERGVEKAQSVIATLKEKGFLVN------DKAVREFLDKKA 324 (344)
Q Consensus 252 ay~k~g~-~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~~e~a~~l~~~M~~~Gi~p~------~~~~~~Ll~~ya 324 (344)
+||+.|+ .++|.++|++|.+.|+.||.+||+++|.++.+.+-++.+.++ .-++.|+ ..+...|.+.|+
T Consensus 209 glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv-----~P~f~p~~~~~~~~~t~~LL~dl~s 283 (1134)
T 3spa_A 209 CMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKV-----KPTFSLPPQLPPPVNTSKLLRDVYA 283 (1134)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGG-----CCCCCCCCCCCCCCCCCTTTHHHHC
T ss_pred HHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHh-----CcccCCCCCCcccccchHHHHHHHc
Confidence 9999998 578999999999999999999999999887766544433333 3466665 556666777777
Q ss_pred CCC
Q 047934 325 PFS 327 (344)
Q Consensus 325 k~g 327 (344)
+-+
T Consensus 284 ~d~ 286 (1134)
T 3spa_A 284 KDG 286 (1134)
T ss_dssp CCS
T ss_pred cCC
Confidence 655
No 4
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.83 E-value=2e-20 Score=196.90 Aligned_cols=120 Identities=11% Similarity=0.151 Sum_probs=111.6
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 047934 205 IPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQS---NGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTF 281 (344)
Q Consensus 205 ~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~---~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty 281 (344)
.--..|||+||++||++|++++|.++|++|.+ .|+.||++|||+||++||+.|++++|.++|++|.+.|+.||.+||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 33467999999999999999999999988864 589999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCC-HHHHHHHHHHHHHCCCcccHHHHHHHHhccC
Q 047934 282 VGLVDGLCRERG-VEKAQSVIATLKEKGFLVNDKAVREFLDKKA 324 (344)
Q Consensus 282 ~~lL~a~~~~G~-~e~a~~l~~~M~~~Gi~p~~~~~~~Ll~~ya 324 (344)
++||.+||+.|. .++|.++|++|.+.|+.||..+|++++..+.
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~e 247 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEED 247 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhh
Confidence 999999999997 5789999999999999999999998876543
No 5
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.51 E-value=6.4e-13 Score=132.74 Aligned_cols=173 Identities=9% Similarity=-0.030 Sum_probs=104.2
Q ss_pred CCCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 047934 153 ISEPPQEADEIFKKMKETGL--IPNAVAMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRI 230 (344)
Q Consensus 153 ~sg~~~~A~~lf~~M~~~gi--~p~~~tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~v 230 (344)
..|++++|.++|+++.+.+- ...|..++.+|.+.|++++|+++|++|.+.+ +.+..+|+.+..+|.+.|++++|.++
T Consensus 385 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 463 (597)
T 2xpi_A 385 CVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEY 463 (597)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 35566666666666654321 1123456666666666666666666665542 23556666666666666666666666
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 047934 231 FRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEA----GHSPN--VTTFVGLVDGLCRERGVEKAQSVIATL 304 (344)
Q Consensus 231 f~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~----gv~pd--~~ty~~lL~a~~~~G~~e~a~~l~~~M 304 (344)
|++|.+.. ..+..+|+.++.+|.+.|++++|.++|++|.+. +..|+ ..+|..+..+|.+.|++++|.++++.+
T Consensus 464 ~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 542 (597)
T 2xpi_A 464 LQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQG 542 (597)
T ss_dssp HHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 66665542 225666666666666666666666666666554 55565 566666666666666666666666666
Q ss_pred HHCCCcccHHHHHHHHhccCCCCh
Q 047934 305 KEKGFLVNDKAVREFLDKKAPFSS 328 (344)
Q Consensus 305 ~~~Gi~p~~~~~~~Ll~~yak~g~ 328 (344)
.+.+ ..+..+|..+...|.+.|.
T Consensus 543 ~~~~-p~~~~~~~~l~~~~~~~g~ 565 (597)
T 2xpi_A 543 LLLS-TNDANVHTAIALVYLHKKI 565 (597)
T ss_dssp HHHS-SCCHHHHHHHHHHHHHTTC
T ss_pred HHhC-CCChHHHHHHHHHHHHhCC
Confidence 6543 2255666666666665554
No 6
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.47 E-value=2.9e-12 Score=127.97 Aligned_cols=175 Identities=10% Similarity=-0.078 Sum_probs=97.1
Q ss_pred CCCCCCHHHHHHHHHHHHHCCC--CCCHHHHH----------------------------------HHHHHcCCHHHHHH
Q 047934 151 EPISEPPQEADEIFKKMKETGL--IPNAVAML----------------------------------DGLCKDGLIQEAMK 194 (344)
Q Consensus 151 ~~~sg~~~~A~~lf~~M~~~gi--~p~~~tli----------------------------------~~~~k~g~~~~A~~ 194 (344)
+...|++++|+++|++|.+.+- ...+..++ .+|.+.|++++|.+
T Consensus 315 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 394 (597)
T 2xpi_A 315 LFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARR 394 (597)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHH
Confidence 4447888888888888876431 11233444 44555555555555
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 047934 195 LFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGH 274 (344)
Q Consensus 195 lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv 274 (344)
+|+.+.+.. +.+..+|+.++.+|.+.|++++|.++|++|.+.+ ..+..+|+.++.+|.+.|++++|.++|++|.+..
T Consensus 395 ~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 471 (597)
T 2xpi_A 395 YFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF- 471 (597)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 555544421 1234455555555555555555555555555432 1244555555555555555555555555555432
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCccc--HHHHHHHHhccCCCCh
Q 047934 275 SPNVTTFVGLVDGLCRERGVEKAQSVIATLKEK----GFLVN--DKAVREFLDKKAPFSS 328 (344)
Q Consensus 275 ~pd~~ty~~lL~a~~~~G~~e~a~~l~~~M~~~----Gi~p~--~~~~~~Ll~~yak~g~ 328 (344)
..+..+|..+...|.+.|++++|.++|+++.+. +..|+ ..++..+...|.+.|.
T Consensus 472 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~ 531 (597)
T 2xpi_A 472 QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKM 531 (597)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTC
T ss_pred CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcC
Confidence 224556666666666666666666666666554 55555 5566666666665554
No 7
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=98.93 E-value=2.2e-07 Score=79.64 Aligned_cols=176 Identities=9% Similarity=-0.062 Sum_probs=138.5
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc-CCHHHH
Q 047934 151 EPISEPPQEADEIFKKMKETGLIP--NAVAMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKA-QKFDDA 227 (344)
Q Consensus 151 ~~~sg~~~~A~~lf~~M~~~gi~p--~~~tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~-g~~e~A 227 (344)
+...|++++|.++|++..+..-.. .+..+...|...|++++|.++|+...+.. +.+..++..+...|... |++++|
T Consensus 18 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~~A 96 (225)
T 2vq2_A 18 YMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFLCGRLNRPAES 96 (225)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCCHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCcHHHH
Confidence 344788999999999988754221 12357788899999999999999988763 34788999999999999 999999
Q ss_pred HHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 047934 228 KRIFRKMQSNGIAPN-AFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRERGVEKAQSVIATLKE 306 (344)
Q Consensus 228 ~~vf~~M~~~gi~pd-~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~~e~a~~l~~~M~~ 306 (344)
..+|+.+.+.+..|+ ...|..+..+|.+.|++++|.+.|+++.+.. .-+...+..+...|...|++++|.++++.+.+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 175 (225)
T 2vq2_A 97 MAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGDADYYFKKYQS 175 (225)
T ss_dssp HHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999988433343 6788999999999999999999999988753 23578888999999999999999999999887
Q ss_pred CCCcccHHHHHHHHhccCCCCh
Q 047934 307 KGFLVNDKAVREFLDKKAPFSS 328 (344)
Q Consensus 307 ~Gi~p~~~~~~~Ll~~yak~g~ 328 (344)
..-..+...+..+...+...|.
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~ 197 (225)
T 2vq2_A 176 RVEVLQADDLLLGWKIAKALGN 197 (225)
T ss_dssp HHCSCCHHHHHHHHHHHHHTTC
T ss_pred hCCCCCHHHHHHHHHHHHhcCc
Confidence 5321345555555555555554
No 8
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=98.93 E-value=1.1e-07 Score=83.82 Aligned_cols=175 Identities=12% Similarity=0.055 Sum_probs=131.3
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 047934 151 EPISEPPQEADEIFKKMKETGLIP--NAVAMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAK 228 (344)
Q Consensus 151 ~~~sg~~~~A~~lf~~M~~~gi~p--~~~tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~ 228 (344)
+...|++++|.++|+++.+..-.. .+..+...|...|++++|.++|+.+.+.. +.+..++..+..+|...|++++|.
T Consensus 47 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~ 125 (252)
T 2ho1_A 47 YLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLYEQKRYEEAY 125 (252)
T ss_dssp HHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHHhHHHHHH
Confidence 334677889999998887654211 12346777888999999999998887663 236788888888999999999999
Q ss_pred HHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 047934 229 RIFRKMQSNGIAP-NAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRERGVEKAQSVIATLKEK 307 (344)
Q Consensus 229 ~vf~~M~~~gi~p-d~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~~e~a~~l~~~M~~~ 307 (344)
.+|+++...+..| +...|..+..+|.+.|++++|.+.|++..+.. ..+...+..+...|...|++++|.++++.+.+.
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 204 (252)
T 2ho1_A 126 QRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPARQYYDLFAQG 204 (252)
T ss_dssp HHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999887743444 45678888888899999999999998887753 235777888888888999999999999988764
Q ss_pred CCcccHHHHHHHHhccCCCCh
Q 047934 308 GFLVNDKAVREFLDKKAPFSS 328 (344)
Q Consensus 308 Gi~p~~~~~~~Ll~~yak~g~ 328 (344)
.- .+...+..+...|.+.|.
T Consensus 205 ~~-~~~~~~~~~~~~~~~~g~ 224 (252)
T 2ho1_A 205 GG-QNARSLLLGIRLAKVFED 224 (252)
T ss_dssp SC-CCHHHHHHHHHHHHHTTC
T ss_pred Cc-CcHHHHHHHHHHHHHccC
Confidence 32 345556666666666554
No 9
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=98.90 E-value=1.3e-07 Score=89.30 Aligned_cols=141 Identities=11% Similarity=0.010 Sum_probs=87.0
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 047934 184 CKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAV 263 (344)
Q Consensus 184 ~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~ 263 (344)
...|++++|...|+...+.. +-+..++..+..+|.+.|++++|...|+++.+.. .-+..+|..+..+|.+.|++++|.
T Consensus 214 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 291 (388)
T 1w3b_A 214 KEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAE 291 (388)
T ss_dssp HTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 33344444444443333321 1245666777777777777777777777776642 124566777777777777777777
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCcccHHHHHHHHhccCCCCh
Q 047934 264 EYCIEMLEAGHSPNVTTFVGLVDGLCRERGVEKAQSVIATLKEKGFLVNDKAVREFLDKKAPFSS 328 (344)
Q Consensus 264 ~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~~e~a~~l~~~M~~~Gi~p~~~~~~~Ll~~yak~g~ 328 (344)
++|+++.+.. ..+..++..+...+...|++++|.++++.+.+.. ..+..++..+...|.+.|.
T Consensus 292 ~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 354 (388)
T 1w3b_A 292 DCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGK 354 (388)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCC
Confidence 7777776652 3456677777777777777777777777766532 2235566666666666654
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=98.90 E-value=8.7e-08 Score=91.74 Aligned_cols=172 Identities=13% Similarity=0.067 Sum_probs=130.8
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCC-----HHHH------------HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 047934 151 EPISEPPQEADEIFKKMKETGLIPN-----AVAM------------LDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTA 213 (344)
Q Consensus 151 ~~~sg~~~~A~~lf~~M~~~gi~p~-----~~tl------------i~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~ 213 (344)
+...|++++|.++|+++.+.+-... +..+ ...|.+.|++++|+++|+.+.+.. +.+..++..
T Consensus 104 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 182 (450)
T 2y4t_A 104 LLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELREL 182 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHH
Confidence 3447889999999999887542211 1122 334888999999999999988753 347888999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHH--------
Q 047934 214 VVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPN-VTTFVGL-------- 284 (344)
Q Consensus 214 LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd-~~ty~~l-------- 284 (344)
+..+|.+.|++++|..+|+++.+.. ..+..+|..+..+|.+.|++++|+++|+++... .|+ ...+..+
T Consensus 183 l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~ 259 (450)
T 2y4t_A 183 RAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNK 259 (450)
T ss_dssp HHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHH
Confidence 9999999999999999999987652 336889999999999999999999999998864 343 3444444
Q ss_pred ----HHHHHHcCCHHHHHHHHHHHHHCCCccc-----HHHHHHHHhccCCCCh
Q 047934 285 ----VDGLCRERGVEKAQSVIATLKEKGFLVN-----DKAVREFLDKKAPFSS 328 (344)
Q Consensus 285 ----L~a~~~~G~~e~a~~l~~~M~~~Gi~p~-----~~~~~~Ll~~yak~g~ 328 (344)
...|.+.|++++|.+++..+.+. .|+ ..++..+...|.+.|.
T Consensus 260 ~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~ 310 (450)
T 2y4t_A 260 LIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEK 310 (450)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCC
Confidence 77888899999999999998874 333 3466777777777765
No 11
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=98.88 E-value=1e-07 Score=88.01 Aligned_cols=166 Identities=13% Similarity=0.066 Sum_probs=129.7
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 047934 153 ISEPPQEADEIFKKMKETGLIPNAV----AMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAK 228 (344)
Q Consensus 153 ~sg~~~~A~~lf~~M~~~gi~p~~~----tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~ 228 (344)
..++.++|++.++++...++.|+.. .+-..|.+.|++++|+++++. +.+..++..+...|.+.|++++|.
T Consensus 77 ~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~ 150 (291)
T 3mkr_A 77 SHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLAR 150 (291)
T ss_dssp CSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 3567999999999999877666432 345788899999999999987 468899999999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHH---HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 047934 229 RIFRKMQSNGIAPNAFSY---NLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRERGVEKAQSVIATLK 305 (344)
Q Consensus 229 ~vf~~M~~~gi~pd~~ty---n~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~~e~a~~l~~~M~ 305 (344)
+.|+.+.+.. |+.... ..++..+...|++++|..+|+++.+. ...+...++.+..++.+.|++++|.+.+++..
T Consensus 151 ~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al 227 (291)
T 3mkr_A 151 KELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEAL 227 (291)
T ss_dssp HHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999998863 553211 22334444568999999999999987 35578889999999999999999999999988
Q ss_pred HCCCcccHHHHHHHHhccCCCCh
Q 047934 306 EKGFLVNDKAVREFLDKKAPFSS 328 (344)
Q Consensus 306 ~~Gi~p~~~~~~~Ll~~yak~g~ 328 (344)
+.. .-+..++..+...+...|.
T Consensus 228 ~~~-p~~~~~l~~l~~~~~~~g~ 249 (291)
T 3mkr_A 228 DKD-SGHPETLINLVVLSQHLGK 249 (291)
T ss_dssp HHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HhC-CCCHHHHHHHHHHHHHcCC
Confidence 653 2245556666655555554
No 12
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=98.87 E-value=2.6e-07 Score=87.12 Aligned_cols=173 Identities=15% Similarity=0.062 Sum_probs=135.4
Q ss_pred CCCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 047934 153 ISEPPQEADEIFKKMKETGLI--PNAVAMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRI 230 (344)
Q Consensus 153 ~sg~~~~A~~lf~~M~~~gi~--p~~~tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~v 230 (344)
..|++++|.++|+++.+..-. ..+..+...|.+.|++++|.+.|+.+.+.. +-+...|..+-..+...|++++|...
T Consensus 147 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~ 225 (388)
T 1w3b_A 147 ALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAA 225 (388)
T ss_dssp TTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHH
T ss_pred HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 357788888888887765321 113456777888888888888888887753 23567788888888888888888888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCc
Q 047934 231 FRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRERGVEKAQSVIATLKEKGFL 310 (344)
Q Consensus 231 f~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~~e~a~~l~~~M~~~Gi~ 310 (344)
|++..... .-+..+|..+..+|.+.|++++|.+.|+++.+.. .-+..+|..+...|.+.|++++|.++++.+.+.. .
T Consensus 226 ~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p 302 (388)
T 1w3b_A 226 YLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-P 302 (388)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-T
T ss_pred HHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-c
Confidence 88877642 2257889999999999999999999999998863 2257789999999999999999999999998763 4
Q ss_pred ccHHHHHHHHhccCCCChH
Q 047934 311 VNDKAVREFLDKKAPFSSS 329 (344)
Q Consensus 311 p~~~~~~~Ll~~yak~g~~ 329 (344)
.+..++..+...|.+.|..
T Consensus 303 ~~~~~~~~l~~~~~~~g~~ 321 (388)
T 1w3b_A 303 THADSLNNLANIKREQGNI 321 (388)
T ss_dssp TCHHHHHHHHHHHHTTTCH
T ss_pred ccHHHHHHHHHHHHHcCCH
Confidence 4677888888888877753
No 13
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=98.85 E-value=1.2e-07 Score=90.72 Aligned_cols=174 Identities=13% Similarity=0.020 Sum_probs=134.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 047934 150 NEPISEPPQEADEIFKKMKETGLI--PNAVAMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDA 227 (344)
Q Consensus 150 ~~~~sg~~~~A~~lf~~M~~~gi~--p~~~tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A 227 (344)
.++..|++++|+++|+++.+..-. ..+..+..+|...|++++|+++|+.+.+.+ +.+..++..+..+|.+.|++++|
T Consensus 35 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 113 (450)
T 2y4t_A 35 KLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHLLLKQGKLDEA 113 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHH
Confidence 445578899999999998875321 113357888899999999999999988764 33688899999999999999999
Q ss_pred HHHHHHHHHCCCCCCH----HHHHHHHHH------------HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 047934 228 KRIFRKMQSNGIAPNA----FSYNLLIQG------------LYKCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRE 291 (344)
Q Consensus 228 ~~vf~~M~~~gi~pd~----~tyn~LI~a------------y~k~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~ 291 (344)
..+|+.+.+. .|+. ..|..++.. |.+.|++++|+++|+++.+.. ..+..++..+..+|...
T Consensus 114 ~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 190 (450)
T 2y4t_A 114 EDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKE 190 (450)
T ss_dssp HHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHC
Confidence 9999999875 3443 566666444 888999999999999988753 33678888888999999
Q ss_pred CCHHHHHHHHHHHHHCCCcccHHHHHHHHhccCCCCh
Q 047934 292 RGVEKAQSVIATLKEKGFLVNDKAVREFLDKKAPFSS 328 (344)
Q Consensus 292 G~~e~a~~l~~~M~~~Gi~p~~~~~~~Ll~~yak~g~ 328 (344)
|++++|.+++..+.+.. ..+..++..+...|...|.
T Consensus 191 g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~ 226 (450)
T 2y4t_A 191 GEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGD 226 (450)
T ss_dssp TCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 99999999999887652 2245677777777776665
No 14
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=98.85 E-value=4.5e-07 Score=79.78 Aligned_cols=155 Identities=16% Similarity=0.029 Sum_probs=129.0
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHH
Q 047934 151 EPISEPPQEADEIFKKMKETGLIP--NAVAMLDGLCKDGLIQEAMKLFGLMREKGTIP-EVVIYTAVVDGFCKAQKFDDA 227 (344)
Q Consensus 151 ~~~sg~~~~A~~lf~~M~~~gi~p--~~~tli~~~~k~g~~~~A~~lf~~M~~~g~~p-d~~tyn~LI~ay~k~g~~e~A 227 (344)
+...|++++|.++|+++.+..-.. .+..+...|...|++++|.++|+.+.+.+..| +..++..+..+|...|++++|
T Consensus 81 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 160 (252)
T 2ho1_A 81 FQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQA 160 (252)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHH
Confidence 344789999999999988754221 12357788999999999999999988743444 567888999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 047934 228 KRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRERGVEKAQSVIATLKEK 307 (344)
Q Consensus 228 ~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~~e~a~~l~~~M~~~ 307 (344)
...|+++.+.. ..+...|..+...|.+.|++++|.++|++..+.. ..+...+..+...+...|+.++|.++++.+.+.
T Consensus 161 ~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 161 KEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 99999988753 2368889999999999999999999999987643 346778888899999999999999999999875
No 15
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=98.83 E-value=4.4e-07 Score=74.94 Aligned_cols=153 Identities=14% Similarity=0.063 Sum_probs=126.7
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 047934 152 PISEPPQEADEIFKKMKETGLIP--NAVAMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKR 229 (344)
Q Consensus 152 ~~sg~~~~A~~lf~~M~~~gi~p--~~~tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~ 229 (344)
...|++++|.++|+++.+..-.. .+..+...|...|++++|.++|+.+.+.. +.+..++..+...|...|++++|..
T Consensus 19 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~ 97 (186)
T 3as5_A 19 AKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQVQKYDLAVP 97 (186)
T ss_dssp HHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHH
Confidence 34678999999999887643221 12357788889999999999999988763 3478889999999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 047934 230 IFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRERGVEKAQSVIATLKEK 307 (344)
Q Consensus 230 vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~~e~a~~l~~~M~~~ 307 (344)
+|+.+.... ..+...|..+..+|.+.|++++|.+++++..... ..+..++..+...|...|+.++|.+.++...+.
T Consensus 98 ~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 98 LLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPHFKKANEL 173 (186)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 999988753 3477889999999999999999999999988764 336788889999999999999999999987653
No 16
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=98.83 E-value=1.8e-07 Score=81.52 Aligned_cols=175 Identities=17% Similarity=0.108 Sum_probs=107.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Q 047934 149 RNEPISEPPQEADEIFKKMKETGLIP--NAVAMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDD 226 (344)
Q Consensus 149 ~~~~~sg~~~~A~~lf~~M~~~gi~p--~~~tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~ 226 (344)
..+...|++++|..+|+++.+..-.. .+..+...|...|++++|+++|+...+.. +.+..++..+...|...|++++
T Consensus 31 ~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 109 (243)
T 2q7f_A 31 GRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVYVVKEMYKE 109 (243)
T ss_dssp -----------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHhccHHH
Confidence 34455677777777777776543211 11235666777778888888777776653 2356777777777777788888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 047934 227 AKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRERGVEKAQSVIATLKE 306 (344)
Q Consensus 227 A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~~e~a~~l~~~M~~ 306 (344)
|..+|+++.+.. ..+...|..+...|.+.|++++|.++++++.+.. ..+...+..+...|...|++++|.+++..+.+
T Consensus 110 A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 187 (243)
T 2q7f_A 110 AKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEALSQFAAVTE 187 (243)
T ss_dssp HHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 888777776643 2356677777777777788888887777776542 23566677777777777777777777777765
Q ss_pred CCCcccHHHHHHHHhccCCCC
Q 047934 307 KGFLVNDKAVREFLDKKAPFS 327 (344)
Q Consensus 307 ~Gi~p~~~~~~~Ll~~yak~g 327 (344)
..- .+..++..+...|.+.|
T Consensus 188 ~~~-~~~~~~~~la~~~~~~~ 207 (243)
T 2q7f_A 188 QDP-GHADAFYNAGVTYAYKE 207 (243)
T ss_dssp HCT-TCHHHHHHHHHHHHHTT
T ss_pred hCc-ccHHHHHHHHHHHHHcc
Confidence 432 23445555555554444
No 17
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.80 E-value=6.3e-07 Score=69.72 Aligned_cols=129 Identities=17% Similarity=0.214 Sum_probs=108.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 047934 176 AVAMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYK 255 (344)
Q Consensus 176 ~~tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k 255 (344)
+..+...|...|++++|..+|+.+.+.. +.+..++..+...+...|++++|..+|+++.... ..+...|..+...|..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 3456778889999999999999988764 3467888889999999999999999999988754 3367788899999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 047934 256 CNKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRERGVEKAQSVIATLKEK 307 (344)
Q Consensus 256 ~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~~e~a~~l~~~M~~~ 307 (344)
.|++++|.++|+++.... ..+..++..+...+...|+.++|.+.+..+.+.
T Consensus 82 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 999999999999988753 235778888999999999999999999988754
No 18
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=98.80 E-value=8.9e-07 Score=75.73 Aligned_cols=166 Identities=12% Similarity=-0.000 Sum_probs=131.9
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHH
Q 047934 151 EPISEPPQEADEIFKKMKETGLIP--NAVAMLDGLCKD-GLIQEAMKLFGLMREKGTIP-EVVIYTAVVDGFCKAQKFDD 226 (344)
Q Consensus 151 ~~~sg~~~~A~~lf~~M~~~gi~p--~~~tli~~~~k~-g~~~~A~~lf~~M~~~g~~p-d~~tyn~LI~ay~k~g~~e~ 226 (344)
+...|++++|.++|++..+..-.. .+..+...|... |++++|..+|+.+.+.+..| +..++..+..+|...|++++
T Consensus 52 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 131 (225)
T 2vq2_A 52 YQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGL 131 (225)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHH
Confidence 344788999999999988754221 123577888899 99999999999998843333 36888999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 047934 227 AKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRERGVEKAQSVIATLKE 306 (344)
Q Consensus 227 A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~~e~a~~l~~~M~~ 306 (344)
|...|+++.+.. ..+...|..+..+|.+.|++++|.+++++.....-..+...+..+...+...|+.+.+..++..+.+
T Consensus 132 A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 132 AEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 999999998753 2358889999999999999999999999988754224677788888888999999999999999875
Q ss_pred CCCcccHHHHHHH
Q 047934 307 KGFLVNDKAVREF 319 (344)
Q Consensus 307 ~Gi~p~~~~~~~L 319 (344)
. .|+...+..+
T Consensus 211 ~--~p~~~~~~~~ 221 (225)
T 2vq2_A 211 N--FPYSEELQTV 221 (225)
T ss_dssp H--CTTCHHHHHH
T ss_pred h--CCCCHHHHHH
Confidence 4 3444444433
No 19
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=98.75 E-value=4.3e-07 Score=79.45 Aligned_cols=176 Identities=13% Similarity=0.072 Sum_probs=128.5
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCC----HHHHHHHHHHHHHcCC
Q 047934 151 EPISEPPQEADEIFKKMKETGLIPN-AVAMLDGLCKDGLIQEAMKLFGLMREKG--TIPE----VVIYTAVVDGFCKAQK 223 (344)
Q Consensus 151 ~~~sg~~~~A~~lf~~M~~~gi~p~-~~tli~~~~k~g~~~~A~~lf~~M~~~g--~~pd----~~tyn~LI~ay~k~g~ 223 (344)
++..|++++|.++|++..+..-.+. +..+...|...|++++|.+.|+...+.. ..++ ..+|..+-..|...|+
T Consensus 15 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 94 (258)
T 3uq3_A 15 FYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGD 94 (258)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHccc
Confidence 3446789999999998877661111 2346778888899999999998876542 2222 5788888888999999
Q ss_pred HHHHHHHHHHHHHCC------------------------CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH
Q 047934 224 FDDAKRIFRKMQSNG------------------------IAP-NAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNV 278 (344)
Q Consensus 224 ~e~A~~vf~~M~~~g------------------------i~p-d~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~ 278 (344)
+++|...|++..... ..| +...|..+...|...|++++|.+.|++..... ..+.
T Consensus 95 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~ 173 (258)
T 3uq3_A 95 LKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDA 173 (258)
T ss_dssp HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred HHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cccH
Confidence 999999988887631 122 34567788888888999999999998887753 2357
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCcccHHHHHHHHhccCCCCh
Q 047934 279 TTFVGLVDGLCRERGVEKAQSVIATLKEKGFLVNDKAVREFLDKKAPFSS 328 (344)
Q Consensus 279 ~ty~~lL~a~~~~G~~e~a~~l~~~M~~~Gi~p~~~~~~~Ll~~yak~g~ 328 (344)
.+|..+...|...|++++|.+.++...+.. ..+...+..+-..|.+.|.
T Consensus 174 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~ 222 (258)
T 3uq3_A 174 RGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKE 222 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhh
Confidence 788888888889999999999998887753 2235566666666666654
No 20
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=98.75 E-value=5.8e-10 Score=109.36 Aligned_cols=152 Identities=13% Similarity=0.111 Sum_probs=41.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 047934 150 NEPISEPPQEADEIFKKMKETGLIPNAVAMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKR 229 (344)
Q Consensus 150 ~~~~sg~~~~A~~lf~~M~~~gi~p~~~tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~ 229 (344)
.+...|++++|++.|.+.. + ...+..++.++...|++++|..+++..++. .+++.+.+.|+.+|+++|+++++++
T Consensus 41 A~l~~g~~~eAIdsfika~--D-~~~y~~V~~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~ 115 (449)
T 1b89_A 41 AQLQKGMVKEAIDSYIKAD--D-PSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEE 115 (449)
T ss_dssp -------------------------------------------------------------------------CHHHHTT
T ss_pred HHHHcCCHHHHHHHHHcCC--C-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHH
Confidence 3333555666666664321 1 112334555666666666666644443332 3345556666666666666666666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 047934 230 IFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRERGVEKAQSVIATLKEKGF 309 (344)
Q Consensus 230 vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~~e~a~~l~~~M~~~Gi 309 (344)
+++ .|+..+|..+.+.|...|.+++|..+|..+ ..|..+..++.+.|++++|.+.+..+
T Consensus 116 f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA----- 174 (449)
T 1b89_A 116 FIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA----- 174 (449)
T ss_dssp TTT-------CC----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH-----
T ss_pred HHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHc-----
Confidence 553 245556666666666666666666666654 25666666666666666666666665
Q ss_pred cccHHHHHHHHhccCCCCh
Q 047934 310 LVNDKAVREFLDKKAPFSS 328 (344)
Q Consensus 310 ~p~~~~~~~Ll~~yak~g~ 328 (344)
-+..+|..++.+|...|.
T Consensus 175 -~~~~~Wk~v~~aCv~~~e 192 (449)
T 1b89_A 175 -NSTRTWKEVCFACVDGKE 192 (449)
T ss_dssp -TCHHHHHHHHHHHHHTTC
T ss_pred -CCchhHHHHHHHHHHcCc
Confidence 255666666666666554
No 21
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=98.74 E-value=2e-06 Score=75.24 Aligned_cols=172 Identities=9% Similarity=-0.043 Sum_probs=138.8
Q ss_pred CCCCCHHHHHHHHHHHHHCCCC-C-CHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc--------
Q 047934 152 PISEPPQEADEIFKKMKETGLI-P-NAVAMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKA-------- 221 (344)
Q Consensus 152 ~~sg~~~~A~~lf~~M~~~gi~-p-~~~tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~-------- 221 (344)
...|++++|...|++..+.+-. + -+..+-..|.+.|++++|+..|+...+.. +-+...+..+-.+|...
T Consensus 16 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~ 94 (217)
T 2pl2_A 16 YALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSEAYVALYRQAEDRE 94 (217)
T ss_dssp HHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHTCSSHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhhhhhhhhc
Confidence 4478899999999998865321 1 12346778889999999999999988763 33678899999999999
Q ss_pred ---CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 047934 222 ---QKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRERGVEKAQ 298 (344)
Q Consensus 222 ---g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~~e~a~ 298 (344)
|++++|...|++..+.. +-+...|..+-.+|...|++++|+..|++..+.. .+...+..+-..|...|++++|.
T Consensus 95 ~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~ 171 (217)
T 2pl2_A 95 RGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEAL 171 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHH
T ss_pred ccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999988753 2257889999999999999999999999999887 68899999999999999999999
Q ss_pred HHHHHHHHCCCcccHHHHHHHHhccCCCCh
Q 047934 299 SVIATLKEKGFLVNDKAVREFLDKKAPFSS 328 (344)
Q Consensus 299 ~l~~~M~~~Gi~p~~~~~~~Ll~~yak~g~ 328 (344)
..++...+.. .-+...+..+-..+...|.
T Consensus 172 ~~~~~al~~~-P~~~~~~~~la~~~~~~g~ 200 (217)
T 2pl2_A 172 AQYAKALEQA-PKDLDLRVRYASALLLKGK 200 (217)
T ss_dssp HHHHHHHHHS-TTCHHHHHHHHHHHTC---
T ss_pred HHHHHHHHhC-CCChHHHHHHHHHHHHccC
Confidence 9999988752 2245666667677777765
No 22
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=98.73 E-value=1.9e-06 Score=79.84 Aligned_cols=176 Identities=11% Similarity=-0.056 Sum_probs=133.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 047934 150 NEPISEPPQEADEIFKKMKETGLIP--NAVAMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDA 227 (344)
Q Consensus 150 ~~~~sg~~~~A~~lf~~M~~~gi~p--~~~tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A 227 (344)
.++..|++++|..+|+++.+..-.- .+..+...|...|++++|.+.|+.+.+.. +.+..++..+...|...|++++|
T Consensus 73 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A 151 (368)
T 1fch_A 73 RRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQA 151 (368)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 3445788999999999998764221 12357788889999999999999988764 34788899999999999999999
Q ss_pred HHHHHHHHHCCC-----------------------------------------------CC---CHHHHHHHHHHHHHcC
Q 047934 228 KRIFRKMQSNGI-----------------------------------------------AP---NAFSYNLLIQGLYKCN 257 (344)
Q Consensus 228 ~~vf~~M~~~gi-----------------------------------------------~p---d~~tyn~LI~ay~k~g 257 (344)
...|+.+..... .| +..+|..+...|.+.|
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g 231 (368)
T 1fch_A 152 CEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSG 231 (368)
T ss_dssp HHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcC
Confidence 998888766421 12 4678888888889999
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCcccHHHHHHHHhccCCCCh
Q 047934 258 KLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRERGVEKAQSVIATLKEKGFLVNDKAVREFLDKKAPFSS 328 (344)
Q Consensus 258 ~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~~e~a~~l~~~M~~~Gi~p~~~~~~~Ll~~yak~g~ 328 (344)
++++|.+.|+++.... ..+..+|..+...|...|++++|.+.++.+.+.. ..+..++..+-..|.+.|.
T Consensus 232 ~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~ 300 (368)
T 1fch_A 232 EYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGA 300 (368)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCC
Confidence 9999999998887652 2357788888888889999999999998887653 2234556666666555554
No 23
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=98.73 E-value=1.1e-06 Score=76.30 Aligned_cols=155 Identities=12% Similarity=0.022 Sum_probs=130.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 047934 150 NEPISEPPQEADEIFKKMKETGLIP--NAVAMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDA 227 (344)
Q Consensus 150 ~~~~sg~~~~A~~lf~~M~~~gi~p--~~~tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A 227 (344)
.+...|++++|.++|++..+..-.. .+..+...|...|++++|.++|+.+.+.. +.+..++..+...|.+.|++++|
T Consensus 66 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A 144 (243)
T 2q7f_A 66 LLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLA 144 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHH
Confidence 3445788999999999988754221 12357788899999999999999988764 34788899999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 047934 228 KRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRERGVEKAQSVIATLKEK 307 (344)
Q Consensus 228 ~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~~e~a~~l~~~M~~~ 307 (344)
..+++++.+.. ..+...|..+...|.+.|++++|.+.|++..... ..+..++..+...|...|+.++|.+.++.+.+.
T Consensus 145 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 145 LPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 99999988753 2368889999999999999999999999988763 335788999999999999999999999998875
No 24
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=98.71 E-value=7.1e-07 Score=83.25 Aligned_cols=174 Identities=8% Similarity=-0.111 Sum_probs=123.9
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 047934 151 EPISEPPQEADEIFKKMKETGLI--PNAVAMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAK 228 (344)
Q Consensus 151 ~~~sg~~~~A~~lf~~M~~~gi~--p~~~tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~ 228 (344)
++..|++++|+++|+++.+..-. ..+..+...|.+.|++++|+++|+...+.. +.+..+|..+..+|...|++++|.
T Consensus 75 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 153 (365)
T 4eqf_A 75 RLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYTNTSHQQDAC 153 (365)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHccccHHHHH
Confidence 34467888999999888765321 113357788888888999998888887653 335788888888888888888888
Q ss_pred HHHHHHHHCCC------------------------------------------CC---CHHHHHHHHHHHHHcCCHHHHH
Q 047934 229 RIFRKMQSNGI------------------------------------------AP---NAFSYNLLIQGLYKCNKLEEAV 263 (344)
Q Consensus 229 ~vf~~M~~~gi------------------------------------------~p---d~~tyn~LI~ay~k~g~~~~A~ 263 (344)
.+|+++.+..- .| +..+|..+...|.+.|++++|+
T Consensus 154 ~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~ 233 (365)
T 4eqf_A 154 EALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAI 233 (365)
T ss_dssp HHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHH
Confidence 88887754210 11 5677888888888888888888
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCcccHHHHHHHHhccCCCC
Q 047934 264 EYCIEMLEAGHSPNVTTFVGLVDGLCRERGVEKAQSVIATLKEKGFLVNDKAVREFLDKKAPFS 327 (344)
Q Consensus 264 ~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~~e~a~~l~~~M~~~Gi~p~~~~~~~Ll~~yak~g 327 (344)
++|++..+.. ..+..+|..+..+|...|++++|.+.++.+.+.. .-+..++..+-..|...|
T Consensus 234 ~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g 295 (365)
T 4eqf_A 234 DAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLG 295 (365)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCC
Confidence 8888877652 2357778888888888888888888888877652 112455555555554444
No 25
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=98.70 E-value=1.3e-08 Score=99.90 Aligned_cols=158 Identities=13% Similarity=0.108 Sum_probs=71.0
Q ss_pred cccccCCCCCCCCCHHHHHHHHHHHHHCCCCC-C-HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 047934 143 QEQKPNRNEPISEPPQEADEIFKKMKETGLIP-N-AVAMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCK 220 (344)
Q Consensus 143 ~y~~~~~~~~~sg~~~~A~~lf~~M~~~gi~p-~-~~tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k 220 (344)
.|...++.+...|++++|+++++...+. ... . .+.++.+|.+.|+++++.++++ .|+..+|+.+-+.|..
T Consensus 63 ~y~~V~~~ae~~g~~EeAi~yl~~ark~-~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~ 134 (449)
T 1b89_A 63 SYMEVVQAANTSGNWEELVKYLQMARKK-ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYD 134 (449)
T ss_dssp -----------------------------------------------CHHHHTTTTT-------CC--------------
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHh-CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHH
Confidence 3444444555578899999977766653 221 1 2358889999999999888885 3677799999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 047934 221 AQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRERGVEKAQSV 300 (344)
Q Consensus 221 ~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~~e~a~~l 300 (344)
.|.+++|...|..+ ..|..|..++++.|++++|.+.+.++ -+..||..++.+|...|+++.|...
T Consensus 135 ~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~ 199 (449)
T 1b89_A 135 EKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMC 199 (449)
T ss_dssp --CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHT
T ss_pred cCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHH
Confidence 99999999999876 27888888888888888888888877 2688888888888888888777443
Q ss_pred HHHHHHCCCcccHHHHHHHHhccCCCCh
Q 047934 301 IATLKEKGFLVNDKAVREFLDKKAPFSS 328 (344)
Q Consensus 301 ~~~M~~~Gi~p~~~~~~~Ll~~yak~g~ 328 (344)
... +.........++..|.+.|.
T Consensus 200 ~l~-----L~~~ad~l~~lv~~Yek~G~ 222 (449)
T 1b89_A 200 GLH-----IVVHADELEELINYYQDRGY 222 (449)
T ss_dssp TTT-----TTTCHHHHHHHHHHHHHTTC
T ss_pred HHH-----HHhCHhhHHHHHHHHHHCCC
Confidence 332 22222333456666666654
No 26
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=98.69 E-value=2e-06 Score=78.05 Aligned_cols=175 Identities=8% Similarity=-0.084 Sum_probs=139.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-CHHH
Q 047934 150 NEPISEPPQEADEIFKKMKETGLI--PNAVAMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQ-KFDD 226 (344)
Q Consensus 150 ~~~~sg~~~~A~~lf~~M~~~gi~--p~~~tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g-~~e~ 226 (344)
.++..|++++|+++|+++.+..-. ..+..+...+...|++++|..+++.+.+.. +-+..+|..+-..|...| ++++
T Consensus 31 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~ 109 (330)
T 3hym_B 31 RHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYYLMVGHKNEH 109 (330)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHHHSCSCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhhhhHHH
Confidence 344468999999999998875422 123457888899999999999999988753 336788899999999999 9999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 047934 227 AKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRERGVEKAQSVIATLKE 306 (344)
Q Consensus 227 A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~~e~a~~l~~~M~~ 306 (344)
|...|++..+.. .-+...|..+..+|...|++++|.+.|++.....- .+...+..+...|...|++++|.+++....+
T Consensus 110 A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 187 (330)
T 3hym_B 110 ARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMK-GCHLPMLYIGLEYGLTNNSKLAERFFSQALS 187 (330)
T ss_dssp HHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTT-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 999999998763 23577899999999999999999999999887642 2456677788899999999999999999887
Q ss_pred CCCcccHHHHHHHHhccCCCCh
Q 047934 307 KGFLVNDKAVREFLDKKAPFSS 328 (344)
Q Consensus 307 ~Gi~p~~~~~~~Ll~~yak~g~ 328 (344)
.. ..+..++..+...|...|.
T Consensus 188 ~~-~~~~~~~~~l~~~~~~~~~ 208 (330)
T 3hym_B 188 IA-PEDPFVMHEVGVVAFQNGE 208 (330)
T ss_dssp TC-TTCHHHHHHHHHHHHHTTC
T ss_pred hC-CCChHHHHHHHHHHHHccc
Confidence 64 2245666666666666664
No 27
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=98.68 E-value=7.3e-07 Score=80.87 Aligned_cols=175 Identities=10% Similarity=-0.021 Sum_probs=133.9
Q ss_pred CCCCHHHHHHHHHHHHHCCCCC-CHHHHH--------------H--HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 047934 153 ISEPPQEADEIFKKMKETGLIP-NAVAML--------------D--GLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVV 215 (344)
Q Consensus 153 ~sg~~~~A~~lf~~M~~~gi~p-~~~tli--------------~--~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI 215 (344)
..|++++|.+.|+++.+..-.. .....+ . .+...|++++|.++++.+.+.. +.+..++..+.
T Consensus 101 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 179 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLG 179 (327)
T ss_dssp HTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHH
Confidence 3567777777777776543110 011111 2 2677789999999999988764 33789999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH
Q 047934 216 DGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRERGVE 295 (344)
Q Consensus 216 ~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~~e 295 (344)
..|.+.|++++|..+|+++.+.. ..+..+|..+...|...|++++|.+.|++..+.. ..+..++..+...|...|+++
T Consensus 180 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~ 257 (327)
T 3cv0_A 180 VLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYD 257 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHH
Confidence 99999999999999999988753 3367899999999999999999999999988753 236788999999999999999
Q ss_pred HHHHHHHHHHHCCCcc-----------cHHHHHHHHhccCCCChHH
Q 047934 296 KAQSVIATLKEKGFLV-----------NDKAVREFLDKKAPFSSSV 330 (344)
Q Consensus 296 ~a~~l~~~M~~~Gi~p-----------~~~~~~~Ll~~yak~g~~~ 330 (344)
+|.+.++.+.+..-.. +..++..+...|.+.|...
T Consensus 258 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 303 (327)
T 3cv0_A 258 LAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPD 303 (327)
T ss_dssp HHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHH
Confidence 9999999987653221 4667777777777777643
No 28
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=98.68 E-value=7.4e-06 Score=68.71 Aligned_cols=157 Identities=11% Similarity=0.007 Sum_probs=129.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH
Q 047934 148 NRNEPISEPPQEADEIFKKMKETGLI--PNAVAMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFD 225 (344)
Q Consensus 148 ~~~~~~sg~~~~A~~lf~~M~~~gi~--p~~~tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e 225 (344)
+..+...|++++|++.|++..+.+-. ..+..+-..|.+.|++++|...+........ -+...+..+-..+...++++
T Consensus 12 G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 90 (184)
T 3vtx_A 12 GDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDT-TSAEAYYILGSANFMIDEKQ 90 (184)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-hhHHHHHHHHHHHHHcCCHH
Confidence 33445578999999999998875421 1123577888999999999999998877643 36778888888999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 047934 226 DAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRERGVEKAQSVIATLK 305 (344)
Q Consensus 226 ~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~~e~a~~l~~~M~ 305 (344)
.|...+....... .-+...|..+-.+|.+.|++++|++.|++..+.. +-+..+|..+-..|.+.|++++|.+.|+...
T Consensus 91 ~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 168 (184)
T 3vtx_A 91 AAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEAVKYFKKAL 168 (184)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9999999987753 3367889999999999999999999999988753 2367889999999999999999999999987
Q ss_pred HC
Q 047934 306 EK 307 (344)
Q Consensus 306 ~~ 307 (344)
+.
T Consensus 169 ~~ 170 (184)
T 3vtx_A 169 EK 170 (184)
T ss_dssp HT
T ss_pred hC
Confidence 64
No 29
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=98.66 E-value=2.3e-06 Score=77.66 Aligned_cols=152 Identities=11% Similarity=-0.006 Sum_probs=84.8
Q ss_pred CC-CHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 047934 154 SE-PPQEADEIFKKMKETGLI--PNAVAMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRI 230 (344)
Q Consensus 154 sg-~~~~A~~lf~~M~~~gi~--p~~~tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~v 230 (344)
.| ++++|.+.|++..+..-. ..+..+...|...|++++|.+.|+...+..- .+..++..+...|...|++++|...
T Consensus 103 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~ 181 (330)
T 3hym_B 103 VGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMK-GCHLPMLYIGLEYGLTNNSKLAERF 181 (330)
T ss_dssp SCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTT-TCSHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhHHHHHHH
Confidence 45 566666666666543311 1133455566666666666666666555421 1334455566666666666666666
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 047934 231 FRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAG--------HSPNVTTFVGLVDGLCRERGVEKAQSVIA 302 (344)
Q Consensus 231 f~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~g--------v~pd~~ty~~lL~a~~~~G~~e~a~~l~~ 302 (344)
|++..+.. ..+...|..+...|.+.|++++|...|++..... ...+..++..+...|...|++++|.+.++
T Consensus 182 ~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 260 (330)
T 3hym_B 182 FSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHR 260 (330)
T ss_dssp HHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 66665542 2245566666666666666666666666655421 12234455566666666666666666666
Q ss_pred HHHHC
Q 047934 303 TLKEK 307 (344)
Q Consensus 303 ~M~~~ 307 (344)
...+.
T Consensus 261 ~a~~~ 265 (330)
T 3hym_B 261 QALVL 265 (330)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 65543
No 30
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=98.66 E-value=5.2e-07 Score=83.74 Aligned_cols=174 Identities=16% Similarity=0.048 Sum_probs=134.0
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCHH---H--------------HHHHHHHcCCHHHHHHHHHHHHHcCCC-CCHHHHHHH
Q 047934 153 ISEPPQEADEIFKKMKETGLIPNAV---A--------------MLDGLCKDGLIQEAMKLFGLMREKGTI-PEVVIYTAV 214 (344)
Q Consensus 153 ~sg~~~~A~~lf~~M~~~gi~p~~~---t--------------li~~~~k~g~~~~A~~lf~~M~~~g~~-pd~~tyn~L 214 (344)
..|++++|.+.|+++.+..-..... . .+..+...|++++|.++|+.+.+..-. ++..++..+
T Consensus 144 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l 223 (368)
T 1fch_A 144 NESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGL 223 (368)
T ss_dssp HTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHH
Confidence 3567777777777776643211000 0 245555889999999999999876422 268999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 047934 215 VDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRERGV 294 (344)
Q Consensus 215 I~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~~ 294 (344)
..+|.+.|++++|...|+++.+.. ..+..+|..+...|.+.|++++|.+.|++..... ..+..++..+...|.+.|++
T Consensus 224 ~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~ 301 (368)
T 1fch_A 224 GVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAH 301 (368)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCH
Confidence 999999999999999999988753 3357899999999999999999999999988753 33678899999999999999
Q ss_pred HHHHHHHHHHHHCCCc----------ccHHHHHHHHhccCCCCh
Q 047934 295 EKAQSVIATLKEKGFL----------VNDKAVREFLDKKAPFSS 328 (344)
Q Consensus 295 e~a~~l~~~M~~~Gi~----------p~~~~~~~Ll~~yak~g~ 328 (344)
++|.+.++.+.+..-. ....++..+...|...|.
T Consensus 302 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 345 (368)
T 1fch_A 302 REAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQ 345 (368)
T ss_dssp HHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCC
Confidence 9999999988764211 125677777777766664
No 31
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=98.66 E-value=1.6e-06 Score=76.74 Aligned_cols=153 Identities=12% Similarity=-0.035 Sum_probs=124.4
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCC------HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 047934 151 EPISEPPQEADEIFKKMKETGLIPN------AVAMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKF 224 (344)
Q Consensus 151 ~~~sg~~~~A~~lf~~M~~~gi~p~------~~tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~ 224 (344)
....|++++|+++|+++.+.....+ +..+...|...|++++|.+.|+...+.. +.+..+|..+-..|...|++
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~ 93 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNF 93 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCH
T ss_pred cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCH
Confidence 3456899999999999998632211 2247888889999999999999988763 34789999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 047934 225 DDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRERGVEKAQSVIATL 304 (344)
Q Consensus 225 e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~~e~a~~l~~~M 304 (344)
++|...|++..+.. ..+...|..+..+|.+.|++++|.+.|+++.+. .|+...+...+..+...|+.++|..++...
T Consensus 94 ~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 170 (275)
T 1xnf_A 94 DAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQH 170 (275)
T ss_dssp HHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 99999999998853 225789999999999999999999999999875 355555555666667789999999999776
Q ss_pred HHC
Q 047934 305 KEK 307 (344)
Q Consensus 305 ~~~ 307 (344)
...
T Consensus 171 ~~~ 173 (275)
T 1xnf_A 171 FEK 173 (275)
T ss_dssp HHH
T ss_pred Hhc
Confidence 654
No 32
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=98.63 E-value=9.9e-07 Score=82.24 Aligned_cols=174 Identities=15% Similarity=0.042 Sum_probs=132.4
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCC----H----------HHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHH
Q 047934 151 EPISEPPQEADEIFKKMKETGLIPN----A----------VAMLDGLCKDGLIQEAMKLFGLMREKGTI-PEVVIYTAVV 215 (344)
Q Consensus 151 ~~~sg~~~~A~~lf~~M~~~gi~p~----~----------~tli~~~~k~g~~~~A~~lf~~M~~~g~~-pd~~tyn~LI 215 (344)
+...|++++|+++|+++.+.. |+ + ..+...|.+.|++++|.++|+.+.+..-. .+..++..+.
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 344788999999999887642 11 1 12467888899999999999999876422 2689999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH
Q 047934 216 DGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRERGVE 295 (344)
Q Consensus 216 ~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~~e 295 (344)
..|...|++++|...|++..+.. ..+..+|..+..+|.+.|++++|++.|++..+.. .-+..++..+...|...|+++
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 298 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYR 298 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHH
Confidence 99999999999999999998753 3368899999999999999999999999988763 235888999999999999999
Q ss_pred HHHHHHHHHHHCC---Cc--------ccHHHHHHHHhccCCCCh
Q 047934 296 KAQSVIATLKEKG---FL--------VNDKAVREFLDKKAPFSS 328 (344)
Q Consensus 296 ~a~~l~~~M~~~G---i~--------p~~~~~~~Ll~~yak~g~ 328 (344)
+|.+.++.+.+.. .. .+..++..|-..+...|.
T Consensus 299 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 342 (365)
T 4eqf_A 299 EAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQ 342 (365)
T ss_dssp HHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCc
Confidence 9999999987642 11 124566666666655554
No 33
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.62 E-value=1.2e-05 Score=72.05 Aligned_cols=144 Identities=11% Similarity=0.008 Sum_probs=73.4
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHHH
Q 047934 155 EPPQEADEIFKKMKETGLIPNAVAMLDGLCK----DGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCK----AQKFDD 226 (344)
Q Consensus 155 g~~~~A~~lf~~M~~~gi~p~~~tli~~~~k----~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k----~g~~e~ 226 (344)
|++++|.+.|++..+.+....+..+-..|.. .+++++|++.|+...+.+ +...+..|-.+|.. .+++++
T Consensus 20 ~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~ 96 (273)
T 1ouv_A 20 KDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGNLYYSGQGVSQNTNK 96 (273)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhCCCCcccCHHH
Confidence 4555555555555553322112233444444 555555555555555443 44555555555555 555555
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHHHHH
Q 047934 227 AKRIFRKMQSNGIAPNAFSYNLLIQGLYK----CNKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCR----ERGVEKAQ 298 (344)
Q Consensus 227 A~~vf~~M~~~gi~pd~~tyn~LI~ay~k----~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~----~G~~e~a~ 298 (344)
|...|++..+.+ +...+..+-..|.. .++.++|++.|++..+.+ +...+..+-..|.. .++.++|.
T Consensus 97 A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~ 170 (273)
T 1ouv_A 97 ALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKAL 170 (273)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 555555555543 44555555555555 555555555555555543 34444444444444 55555555
Q ss_pred HHHHHHHHC
Q 047934 299 SVIATLKEK 307 (344)
Q Consensus 299 ~l~~~M~~~ 307 (344)
+.++...+.
T Consensus 171 ~~~~~a~~~ 179 (273)
T 1ouv_A 171 ASYDKACDL 179 (273)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHC
Confidence 555555444
No 34
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=98.60 E-value=1.5e-06 Score=78.85 Aligned_cols=151 Identities=5% Similarity=-0.082 Sum_probs=125.4
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 047934 151 EPISEPPQEADEIFKKMKETGLIP--NAVAMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAK 228 (344)
Q Consensus 151 ~~~sg~~~~A~~lf~~M~~~gi~p--~~~tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~ 228 (344)
+...|++++|.++++++.+..-.. .+..+...|.+.|++++|.++|+.+.+.. +.+..++..+...|...|++++|.
T Consensus 148 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 226 (327)
T 3cv0_A 148 FAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEAL 226 (327)
T ss_dssp TTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHH
Confidence 455778999999999988754321 12357888999999999999999988763 346889999999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-----------CHHHHHHHHHHHHHcCCHHHH
Q 047934 229 RIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSP-----------NVTTFVGLVDGLCRERGVEKA 297 (344)
Q Consensus 229 ~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~p-----------d~~ty~~lL~a~~~~G~~e~a 297 (344)
..|+++.+.. ..+..+|..+..+|.+.|++++|.+.|++.....-.. +..+|..+..+|...|+.++|
T Consensus 227 ~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 305 (327)
T 3cv0_A 227 DAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLV 305 (327)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHH
Confidence 9999987753 2367899999999999999999999999987653221 477888999999999999999
Q ss_pred HHHHHH
Q 047934 298 QSVIAT 303 (344)
Q Consensus 298 ~~l~~~ 303 (344)
..++..
T Consensus 306 ~~~~~~ 311 (327)
T 3cv0_A 306 ELTYAQ 311 (327)
T ss_dssp HHHTTC
T ss_pred HHHHHH
Confidence 998874
No 35
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=98.59 E-value=2.1e-06 Score=75.03 Aligned_cols=156 Identities=12% Similarity=0.128 Sum_probs=126.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHCC--CCCC-------HHHHHHHHHHcCCHHHHHHHHHHHHHcC-----------------
Q 047934 150 NEPISEPPQEADEIFKKMKETG--LIPN-------AVAMLDGLCKDGLIQEAMKLFGLMREKG----------------- 203 (344)
Q Consensus 150 ~~~~sg~~~~A~~lf~~M~~~g--i~p~-------~~tli~~~~k~g~~~~A~~lf~~M~~~g----------------- 203 (344)
.+...|++++|.+.|++..+.. ..++ +..+...|...|++++|.+.|+...+..
T Consensus 47 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~ 126 (258)
T 3uq3_A 47 AEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELK 126 (258)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHH
Confidence 3444788999999999877642 2222 2357788889999999999999887732
Q ss_pred -------C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 047934 204 -------T-IPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHS 275 (344)
Q Consensus 204 -------~-~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~ 275 (344)
. +-+..++..+...|...|++++|...|++..+.. ..+..+|..+..+|.+.|++++|.+.|++..+.. .
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~ 204 (258)
T 3uq3_A 127 KAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-P 204 (258)
T ss_dssp HHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred HHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-H
Confidence 1 2245678889999999999999999999998753 3368899999999999999999999999998763 3
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 047934 276 PNVTTFVGLVDGLCRERGVEKAQSVIATLKEK 307 (344)
Q Consensus 276 pd~~ty~~lL~a~~~~G~~e~a~~l~~~M~~~ 307 (344)
.+..+|..+...+...|+.++|.+.++...+.
T Consensus 205 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 205 NFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 35788999999999999999999999988764
No 36
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=98.58 E-value=1.7e-06 Score=79.83 Aligned_cols=148 Identities=20% Similarity=0.148 Sum_probs=116.9
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH---HHHHHHHHHHcCCHHHH
Q 047934 152 PISEPPQEADEIFKKMKETGLIPN-AVAMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVI---YTAVVDGFCKAQKFDDA 227 (344)
Q Consensus 152 ~~sg~~~~A~~lf~~M~~~gi~p~-~~tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~t---yn~LI~ay~k~g~~e~A 227 (344)
...|++++|++++++ +-.+. +..+...|.+.|+.++|.+.|+.+.+.. |+... ..+++..+...|++++|
T Consensus 112 ~~~g~~~~Al~~l~~----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA 185 (291)
T 3mkr_A 112 FYDQNPDAALRTLHQ----GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDA 185 (291)
T ss_dssp HHTTCHHHHHHHHTT----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHH
T ss_pred HHCCCHHHHHHHHhC----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHH
Confidence 347889999999988 11111 2357788999999999999999998874 44321 13344555556899999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHH
Q 047934 228 KRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRERGVEK-AQSVIATLKE 306 (344)
Q Consensus 228 ~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~~e~-a~~l~~~M~~ 306 (344)
..+|+++.+. ...+...|+.+-.+|.+.|++++|.+.|++..+.. .-+..++..+...+...|+.++ +.++++.+.+
T Consensus 186 ~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 186 YYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp HHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 9999999887 35588899999999999999999999999988753 2367889999999999999865 6788888776
Q ss_pred C
Q 047934 307 K 307 (344)
Q Consensus 307 ~ 307 (344)
.
T Consensus 264 ~ 264 (291)
T 3mkr_A 264 A 264 (291)
T ss_dssp H
T ss_pred h
Confidence 4
No 37
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=98.56 E-value=2.7e-06 Score=82.32 Aligned_cols=174 Identities=10% Similarity=-0.133 Sum_probs=129.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Q 047934 150 NEPISEPPQEADEIFKKMKETGLIPNAV---AMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDD 226 (344)
Q Consensus 150 ~~~~sg~~~~A~~lf~~M~~~gi~p~~~---tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~ 226 (344)
.++..|++++|++.|+++.+.+ |+.. .+..+|.+.|++++|++.|+.+.+.. +-+..+|..+..+|.+.|++++
T Consensus 15 ~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 91 (514)
T 2gw1_A 15 QFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLGKFAD 91 (514)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHhhHHH
Confidence 3445789999999999999866 5543 47888999999999999999998764 4467899999999999999999
Q ss_pred HHHHHHHHHHCCCC------------------------------------------------------------------
Q 047934 227 AKRIFRKMQSNGIA------------------------------------------------------------------ 240 (344)
Q Consensus 227 A~~vf~~M~~~gi~------------------------------------------------------------------ 240 (344)
|...|+.+...+-.
T Consensus 92 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (514)
T 2gw1_A 92 AMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIF 171 (514)
T ss_dssp HHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTS
T ss_pred HHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhc
Confidence 99999998765410
Q ss_pred -----------C-CHHHHHHHHHHHHH---cCCHHHHHHHHHHHHH-----cCCCC--------CHHHHHHHHHHHHHcC
Q 047934 241 -----------P-NAFSYNLLIQGLYK---CNKLEEAVEYCIEMLE-----AGHSP--------NVTTFVGLVDGLCRER 292 (344)
Q Consensus 241 -----------p-d~~tyn~LI~ay~k---~g~~~~A~~lf~~M~~-----~gv~p--------d~~ty~~lL~a~~~~G 292 (344)
| +...|..+..++.. .|++++|..+|+++.. ..-.| +..++..+...+...|
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (514)
T 2gw1_A 172 KPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKN 251 (514)
T ss_dssp CCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSS
T ss_pred CHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCC
Confidence 0 02233333333333 7899999999999887 31122 3456777888888999
Q ss_pred CHHHHHHHHHHHHHCCCcccHHHHHHHHhccCCCCh
Q 047934 293 GVEKAQSVIATLKEKGFLVNDKAVREFLDKKAPFSS 328 (344)
Q Consensus 293 ~~e~a~~l~~~M~~~Gi~p~~~~~~~Ll~~yak~g~ 328 (344)
++++|.++++.+.+..-. ...+..+...|...|.
T Consensus 252 ~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~ 285 (514)
T 2gw1_A 252 DPLGAHEDIKKAIELFPR--VNSYIYMALIMADRND 285 (514)
T ss_dssp CHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSC
T ss_pred CHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCC
Confidence 999999999998876433 6666666666665553
No 38
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.54 E-value=2.2e-05 Score=70.21 Aligned_cols=147 Identities=8% Similarity=0.004 Sum_probs=126.6
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHH
Q 047934 154 SEPPQEADEIFKKMKETGLIPNAVAMLDGLCK----DGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCK----AQKFD 225 (344)
Q Consensus 154 sg~~~~A~~lf~~M~~~gi~p~~~tli~~~~k----~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k----~g~~e 225 (344)
.+++++|.+.|++..+.+....+..+-..|.. .++.++|++.|+...+.+ +..++..|-..|.. .++++
T Consensus 55 ~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~ 131 (273)
T 1ouv_A 55 EKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFK 131 (273)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHH
Confidence 67899999999999988733223346667778 999999999999988875 78899999999999 99999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHHHH
Q 047934 226 DAKRIFRKMQSNGIAPNAFSYNLLIQGLYK----CNKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCR----ERGVEKA 297 (344)
Q Consensus 226 ~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k----~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~----~G~~e~a 297 (344)
+|...|++..+.+ +...+..+-..|.. .++.++|++.|++..+.+ +...+..+-..|.. .++.++|
T Consensus 132 ~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A 205 (273)
T 1ouv_A 132 KAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEA 205 (273)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHH
T ss_pred HHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 9999999999876 77788888888888 899999999999988875 56778888888888 9999999
Q ss_pred HHHHHHHHHCCC
Q 047934 298 QSVIATLKEKGF 309 (344)
Q Consensus 298 ~~l~~~M~~~Gi 309 (344)
.+.++...+.+-
T Consensus 206 ~~~~~~a~~~~~ 217 (273)
T 1ouv_A 206 LARYSKACELEN 217 (273)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHhCCC
Confidence 999999988754
No 39
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=98.51 E-value=5e-06 Score=68.44 Aligned_cols=147 Identities=14% Similarity=0.055 Sum_probs=122.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 047934 178 AMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCN 257 (344)
Q Consensus 178 tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g 257 (344)
.+...+...|++++|.++|+.+.+. .+.+..++..+...|...|++++|...++.+.+.. ..+...|..+...|...|
T Consensus 13 ~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~ 90 (186)
T 3as5_A 13 DKGISHAKAGRYSQAVMLLEQVYDA-DAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQVQ 90 (186)
T ss_dssp HHHHHHHHHTCHHHHHHHHTTTCCT-TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHh-CccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhc
Confidence 4567788899999999999987654 23478899999999999999999999999988753 336788999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCcccHHHHHHHHhccCCCCh
Q 047934 258 KLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRERGVEKAQSVIATLKEKGFLVNDKAVREFLDKKAPFSS 328 (344)
Q Consensus 258 ~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~~e~a~~l~~~M~~~Gi~p~~~~~~~Ll~~yak~g~ 328 (344)
++++|.++|+++.... ..+...+..+...|...|++++|.++++.+.+.. ..+...+..+...|...|.
T Consensus 91 ~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~ 159 (186)
T 3as5_A 91 KYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGR 159 (186)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCC
Confidence 9999999999988763 3467888889999999999999999999988764 2345677777777776665
No 40
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=98.51 E-value=1.1e-05 Score=73.58 Aligned_cols=172 Identities=12% Similarity=0.001 Sum_probs=123.9
Q ss_pred CCCCCHHHHHHHHHHHHHCCCC-C-CHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 047934 152 PISEPPQEADEIFKKMKETGLI-P-NAVAMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKR 229 (344)
Q Consensus 152 ~~sg~~~~A~~lf~~M~~~gi~-p-~~~tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~ 229 (344)
+..|++++|+.+|+++.+..-. + .+..+...|...|++++|...|+.+.+.. +-+..+|..+..+|...|++++|..
T Consensus 14 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 92 (359)
T 3ieg_A 14 LAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLLKQGKLDEAED 92 (359)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHHcCChHHHHH
Confidence 4467899999999988775322 1 12346777888899999999998887653 2367888888888999999999999
Q ss_pred HHHHHHHCCCCC----CHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 047934 230 IFRKMQSNGIAP----NAFSYNLL------------IQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRERG 293 (344)
Q Consensus 230 vf~~M~~~gi~p----d~~tyn~L------------I~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~ 293 (344)
.|+.+.+. .| +...|..+ ...|...|++++|.++|+++.+.. ..+...+..+...|...|+
T Consensus 93 ~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 169 (359)
T 3ieg_A 93 DFKKVLKS--NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGE 169 (359)
T ss_dssp HHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhc--CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCC
Confidence 99888765 34 33444444 477788888889988888887653 2356778888888888888
Q ss_pred HHHHHHHHHHHHHCCCcccHHHHHHHHhccCCCCh
Q 047934 294 VEKAQSVIATLKEKGFLVNDKAVREFLDKKAPFSS 328 (344)
Q Consensus 294 ~e~a~~l~~~M~~~Gi~p~~~~~~~Ll~~yak~g~ 328 (344)
+++|.+.+..+.+.. ..+..++..+-..|...|.
T Consensus 170 ~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~ 203 (359)
T 3ieg_A 170 PRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGD 203 (359)
T ss_dssp HHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 888888888887653 2244555555555554443
No 41
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=98.49 E-value=1.1e-05 Score=71.40 Aligned_cols=156 Identities=13% Similarity=0.005 Sum_probs=120.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHcCCHH
Q 047934 150 NEPISEPPQEADEIFKKMKETGL--IPNAVAMLDGLCKDGLIQEAMKLFGLMREKGTIP--EVVIYTAVVDGFCKAQKFD 225 (344)
Q Consensus 150 ~~~~sg~~~~A~~lf~~M~~~gi--~p~~~tli~~~~k~g~~~~A~~lf~~M~~~g~~p--d~~tyn~LI~ay~k~g~~e 225 (344)
.++..|++++|+++|++..+..- ...+..+...|...|++++|++.|+...+..-.+ ...+|..+-..|...|+++
T Consensus 12 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~ 91 (272)
T 3u4t_A 12 FLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDS 91 (272)
T ss_dssp HHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHH
Confidence 34567889999999999887542 2135567888999999999999999988743222 2455888999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 047934 226 DAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRERGVEKAQSVIATLK 305 (344)
Q Consensus 226 ~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~~e~a~~l~~~M~ 305 (344)
+|...|+...+..- -+...|..+-..|...|++++|.+.|++..+. -.-+...|..+-..+...+++++|.+.++.+.
T Consensus 92 ~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 169 (272)
T 3u4t_A 92 LAIQQYQAAVDRDT-TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP-TTTDPKVFYELGQAYYYNKEYVKADSSFVKVL 169 (272)
T ss_dssp HHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc-CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999887532 25678999999999999999999999887765 22345566655534555669999999999887
Q ss_pred HC
Q 047934 306 EK 307 (344)
Q Consensus 306 ~~ 307 (344)
+.
T Consensus 170 ~~ 171 (272)
T 3u4t_A 170 EL 171 (272)
T ss_dssp HH
T ss_pred Hh
Confidence 65
No 42
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.47 E-value=1.6e-06 Score=76.51 Aligned_cols=157 Identities=17% Similarity=0.033 Sum_probs=120.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHC------CCCCCH----HHHHHHHHHcCCHHHHHHHHHHHHHc------C-CCCCHHHHH
Q 047934 150 NEPISEPPQEADEIFKKMKET------GLIPNA----VAMLDGLCKDGLIQEAMKLFGLMREK------G-TIPEVVIYT 212 (344)
Q Consensus 150 ~~~~sg~~~~A~~lf~~M~~~------gi~p~~----~tli~~~~k~g~~~~A~~lf~~M~~~------g-~~pd~~tyn 212 (344)
.+...|++++|++.|++..+. +-.|.. ..+-..|...|++++|.++|....+. . .+....++.
T Consensus 52 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 131 (283)
T 3edt_B 52 VYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLN 131 (283)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHH
Confidence 445578999999999988764 223322 24778888999999999999987654 1 123467888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-------------
Q 047934 213 AVVDGFCKAQKFDDAKRIFRKMQSN------GIAP-NAFSYNLLIQGLYKCNKLEEAVEYCIEMLEA------------- 272 (344)
Q Consensus 213 ~LI~ay~k~g~~e~A~~vf~~M~~~------gi~p-d~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~------------- 272 (344)
.+-..|...|++++|..+|++..+. +-.| ...+|..+...|.+.|++++|.++|++..+.
T Consensus 132 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~ 211 (283)
T 3edt_B 132 NLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDN 211 (283)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhH
Confidence 9999999999999999999998764 1122 3567889999999999999999999987753
Q ss_pred -----------------------------------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 047934 273 -----------------------------------GHSPNVTTFVGLVDGLCRERGVEKAQSVIATLKE 306 (344)
Q Consensus 273 -----------------------------------gv~pd~~ty~~lL~a~~~~G~~e~a~~l~~~M~~ 306 (344)
.......++..+...|...|++++|.++++...+
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 212 KPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp CCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 0111234577788888899999999999988764
No 43
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.47 E-value=7.7e-06 Score=63.32 Aligned_cols=118 Identities=20% Similarity=0.217 Sum_probs=98.4
Q ss_pred CCCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 047934 153 ISEPPQEADEIFKKMKETGLIP--NAVAMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRI 230 (344)
Q Consensus 153 ~sg~~~~A~~lf~~M~~~gi~p--~~~tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~v 230 (344)
..|++++|.++|+++.+.+-.. .+..+...+...|++++|..+|+.+.+.. +.+..++..+...|...|++++|.++
T Consensus 13 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 91 (136)
T 2fo7_A 13 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEY 91 (136)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHhcCHHHHHHH
Confidence 3578999999999988754321 12356778889999999999999988764 34678899999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 047934 231 FRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEA 272 (344)
Q Consensus 231 f~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~ 272 (344)
|+.+.... ..+...|..+...|.+.|++++|.+.|+++...
T Consensus 92 ~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 92 YQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 99998753 336788999999999999999999999998764
No 44
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.47 E-value=3e-06 Score=76.20 Aligned_cols=157 Identities=15% Similarity=0.043 Sum_probs=120.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHC------CCCCC----HHHHHHHHHHcCCHHHHHHHHHHHHHc------CC-CCCHHHHH
Q 047934 150 NEPISEPPQEADEIFKKMKET------GLIPN----AVAMLDGLCKDGLIQEAMKLFGLMREK------GT-IPEVVIYT 212 (344)
Q Consensus 150 ~~~~sg~~~~A~~lf~~M~~~------gi~p~----~~tli~~~~k~g~~~~A~~lf~~M~~~------g~-~pd~~tyn 212 (344)
.+...|++++|.++|++..+. +-.|. +..+...|...|++++|.++|+...+. +- .....++.
T Consensus 78 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 157 (311)
T 3nf1_A 78 VYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLN 157 (311)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHH
Confidence 344478999999999988764 22222 124778888999999999999988754 22 22456788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-------------
Q 047934 213 AVVDGFCKAQKFDDAKRIFRKMQSN------GIAP-NAFSYNLLIQGLYKCNKLEEAVEYCIEMLEA------------- 272 (344)
Q Consensus 213 ~LI~ay~k~g~~e~A~~vf~~M~~~------gi~p-d~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~------------- 272 (344)
.+-..|...|++++|..+|+++.+. +-.| ...+|..+..+|.+.|++++|.+.|+++.+.
T Consensus 158 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 237 (311)
T 3nf1_A 158 NLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDEN 237 (311)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcch
Confidence 8999999999999999999998764 2122 3457889999999999999999999988752
Q ss_pred -----------------------------------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 047934 273 -----------------------------------GHSPNVTTFVGLVDGLCRERGVEKAQSVIATLKE 306 (344)
Q Consensus 273 -----------------------------------gv~pd~~ty~~lL~a~~~~G~~e~a~~l~~~M~~ 306 (344)
.-..+..++..+...|.+.|++++|.++++...+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 238 KPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1122345677888899999999999999998764
No 45
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=98.46 E-value=9.1e-07 Score=85.64 Aligned_cols=171 Identities=14% Similarity=-0.026 Sum_probs=133.3
Q ss_pred CCCCHHHHHHHHHHHHH-----CCCCCC-----------HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 047934 153 ISEPPQEADEIFKKMKE-----TGLIPN-----------AVAMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVD 216 (344)
Q Consensus 153 ~sg~~~~A~~lf~~M~~-----~gi~p~-----------~~tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ 216 (344)
..|++++|.++|+++.+ ....|+ +..+...+...|++++|..+|+.+.+..- +..++..+..
T Consensus 201 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~--~~~~~~~l~~ 278 (514)
T 2gw1_A 201 SPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFP--RVNSYIYMAL 278 (514)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCC--CHHHHHHHHH
T ss_pred hhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCc--cHHHHHHHHH
Confidence 36889999999999887 311211 12467788899999999999999887653 3888999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Q 047934 217 GFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRERGVEK 296 (344)
Q Consensus 217 ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~~e~ 296 (344)
+|...|++++|...|+.+.... ..+...|..+...|...|++++|...|++.....- .+..++..+...|...|++++
T Consensus 279 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~ 356 (514)
T 2gw1_A 279 IMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDP-ENIFPYIQLACLAYRENKFDD 356 (514)
T ss_dssp HHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCS-SCSHHHHHHHHHTTTTTCHHH
T ss_pred HHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCh-hhHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999988753 23677889999999999999999999999887532 256778888888999999999
Q ss_pred HHHHHHHHHHCCCcccHHHHHHHHhccCCCCh
Q 047934 297 AQSVIATLKEKGFLVNDKAVREFLDKKAPFSS 328 (344)
Q Consensus 297 a~~l~~~M~~~Gi~p~~~~~~~Ll~~yak~g~ 328 (344)
|.+++..+.+..- .+..++..+-..|...|.
T Consensus 357 A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~ 387 (514)
T 2gw1_A 357 CETLFSEAKRKFP-EAPEVPNFFAEILTDKND 387 (514)
T ss_dssp HHHHHHHHHHHST-TCSHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHcc-cCHHHHHHHHHHHHHCCC
Confidence 9999999876532 134455555555655554
No 46
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=98.46 E-value=3.3e-06 Score=73.88 Aligned_cols=148 Identities=13% Similarity=0.039 Sum_probs=112.0
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHc-----------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 047934 152 PISEPPQEADEIFKKMKETGLIPN----AVAMLDGLCKD-----------GLIQEAMKLFGLMREKGTIPEVVIYTAVVD 216 (344)
Q Consensus 152 ~~sg~~~~A~~lf~~M~~~gi~p~----~~tli~~~~k~-----------g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ 216 (344)
...|++++|+..|++..+.+ |+ +..+-..|.+. |++++|+..|+...+.. +-+..++..+-.
T Consensus 50 ~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~ 126 (217)
T 2pl2_A 50 LKLGLVNPALENGKTLVART--PRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGL 126 (217)
T ss_dssp HHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence 34788999999999988754 32 23466777788 99999999999988753 236788899999
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Q 047934 217 GFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRERGVEK 296 (344)
Q Consensus 217 ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~~e~ 296 (344)
+|...|++++|+..|++..+.. .+...|..+-.+|...|++++|...|++..+.. +-+...+..+...+...|+.++
T Consensus 127 ~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~ 203 (217)
T 2pl2_A 127 VYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEE 203 (217)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC------
T ss_pred HHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHH
Confidence 9999999999999999998877 688999999999999999999999999988753 2357788888899999999999
Q ss_pred HHHHHHHHH
Q 047934 297 AQSVIATLK 305 (344)
Q Consensus 297 a~~l~~~M~ 305 (344)
|.+.++...
T Consensus 204 A~~~~~~~~ 212 (217)
T 2pl2_A 204 AARAAALEH 212 (217)
T ss_dssp ---------
T ss_pred HHHHHHHHh
Confidence 999888654
No 47
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=98.41 E-value=4e-05 Score=69.88 Aligned_cols=174 Identities=7% Similarity=-0.009 Sum_probs=124.1
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCC-C-CHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 047934 151 EPISEPPQEADEIFKKMKETGLI-P-NAVAMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAK 228 (344)
Q Consensus 151 ~~~sg~~~~A~~lf~~M~~~gi~-p-~~~tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~ 228 (344)
+...|++++|.++|+++.+..-. + .+..+...|...|++++|.+.|+...+.. +.+..++..+...|...|++++|.
T Consensus 130 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~ 208 (359)
T 3ieg_A 130 AFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSL 208 (359)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 34477899999999998775322 1 12357788888999999999999888753 447788889999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHH------------HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHHcC
Q 047934 229 RIFRKMQSNGIAPNAFSYN------------LLIQGLYKCNKLEEAVEYCIEMLEAGHSPNV----TTFVGLVDGLCRER 292 (344)
Q Consensus 229 ~vf~~M~~~gi~pd~~tyn------------~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~----~ty~~lL~a~~~~G 292 (344)
..|+...+..- .+...|. .+...|.+.|++++|.+.+++.....-. +. ..+..+...+...|
T Consensus 209 ~~~~~a~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~ 286 (359)
T 3ieg_A 209 SEVRECLKLDQ-DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDE 286 (359)
T ss_dssp HHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhhCc-cchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHcc
Confidence 99988876521 2333333 2256688889999999999888775321 22 22445667788889
Q ss_pred CHHHHHHHHHHHHHCCCcccHHHHHHHHhccCCCCh
Q 047934 293 GVEKAQSVIATLKEKGFLVNDKAVREFLDKKAPFSS 328 (344)
Q Consensus 293 ~~e~a~~l~~~M~~~Gi~p~~~~~~~Ll~~yak~g~ 328 (344)
++++|.++++...+.. ..+..++..+-..|...|.
T Consensus 287 ~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~ 321 (359)
T 3ieg_A 287 KPVEAIRICSEVLQME-PDNVNALKDRAEAYLIEEM 321 (359)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCC
Confidence 9999999998887752 2245566666666666664
No 48
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.41 E-value=3.6e-06 Score=75.65 Aligned_cols=158 Identities=15% Similarity=0.059 Sum_probs=122.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHCC------CCCC----HHHHHHHHHHcCCHHHHHHHHHHHHHc------C-CCCCHHHHH
Q 047934 150 NEPISEPPQEADEIFKKMKETG------LIPN----AVAMLDGLCKDGLIQEAMKLFGLMREK------G-TIPEVVIYT 212 (344)
Q Consensus 150 ~~~~sg~~~~A~~lf~~M~~~g------i~p~----~~tli~~~~k~g~~~~A~~lf~~M~~~------g-~~pd~~tyn 212 (344)
.++..|++++|..+|+++.+.- ..|. +..+-..|...|++++|.++|+...+. + ......++.
T Consensus 36 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 115 (311)
T 3nf1_A 36 QYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLN 115 (311)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 3445788999999999888730 1121 224778888999999999999988754 2 223467889
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCC-CH
Q 047934 213 AVVDGFCKAQKFDDAKRIFRKMQSN------GIAP-NAFSYNLLIQGLYKCNKLEEAVEYCIEMLEA------GHSP-NV 278 (344)
Q Consensus 213 ~LI~ay~k~g~~e~A~~vf~~M~~~------gi~p-d~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~------gv~p-d~ 278 (344)
.+...|...|++++|...|++..+. +-.+ ....|..+...|...|++++|+++|++.... +-.| ..
T Consensus 116 ~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 195 (311)
T 3nf1_A 116 NLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVA 195 (311)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHH
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHH
Confidence 9999999999999999999988764 2222 3567888999999999999999999998764 2233 34
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 047934 279 TTFVGLVDGLCRERGVEKAQSVIATLKEK 307 (344)
Q Consensus 279 ~ty~~lL~a~~~~G~~e~a~~l~~~M~~~ 307 (344)
.++..+...|...|++++|.++++++.+.
T Consensus 196 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 224 (311)
T 3nf1_A 196 KTKNNLASCYLKQGKFKQAETLYKEILTR 224 (311)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 56788889999999999999999998763
No 49
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.40 E-value=6.1e-07 Score=79.31 Aligned_cols=154 Identities=16% Similarity=0.089 Sum_probs=115.3
Q ss_pred CCCHHHHHHHHHHHHHC-----C-CCCC----HHHHHHHHHHcCCHHHHHHHHHHHHHc------CC-CCCHHHHHHHHH
Q 047934 154 SEPPQEADEIFKKMKET-----G-LIPN----AVAMLDGLCKDGLIQEAMKLFGLMREK------GT-IPEVVIYTAVVD 216 (344)
Q Consensus 154 sg~~~~A~~lf~~M~~~-----g-i~p~----~~tli~~~~k~g~~~~A~~lf~~M~~~------g~-~pd~~tyn~LI~ 216 (344)
.|++++|+++|++..+. + ..|. +..+-..|...|++++|..+|+...+. +- .....++..+-.
T Consensus 14 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~ 93 (283)
T 3edt_B 14 LVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAV 93 (283)
T ss_dssp CSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence 44555666666554441 1 1121 225788888999999999999988754 22 234678899999
Q ss_pred HHHHcCCHHHHHHHHHHHHHC------C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCC-CHHHHH
Q 047934 217 GFCKAQKFDDAKRIFRKMQSN------G-IAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEA------GHSP-NVTTFV 282 (344)
Q Consensus 217 ay~k~g~~e~A~~vf~~M~~~------g-i~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~------gv~p-d~~ty~ 282 (344)
.|...|++++|...|++..+. . ......+|..+-..|...|++++|.++|++.... +-.| ...++.
T Consensus 94 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 173 (283)
T 3edt_B 94 LYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKN 173 (283)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 999999999999999988654 1 1223667889999999999999999999998764 1123 356788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHC
Q 047934 283 GLVDGLCRERGVEKAQSVIATLKEK 307 (344)
Q Consensus 283 ~lL~a~~~~G~~e~a~~l~~~M~~~ 307 (344)
.+...|...|++++|.+++++..+.
T Consensus 174 ~la~~~~~~g~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 174 NLASCYLKQGKYQDAETLYKEILTR 198 (283)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 8889999999999999999988753
No 50
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=98.39 E-value=5.4e-05 Score=66.73 Aligned_cols=157 Identities=11% Similarity=-0.115 Sum_probs=117.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Q 047934 149 RNEPISEPPQEADEIFKKMKETGLI--PNAVAMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDD 226 (344)
Q Consensus 149 ~~~~~sg~~~~A~~lf~~M~~~gi~--p~~~tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~ 226 (344)
..+...|++++|.+.|++..+.+-. ..+..+...|...|++++|.+.|+...+.. +.+..++..+..+|.+.|++++
T Consensus 51 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~ 129 (275)
T 1xnf_A 51 VLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKL 129 (275)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHH
Confidence 3445578999999999998875422 113357888999999999999999988763 2367899999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-------------------------------C
Q 047934 227 AKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGH-------------------------------S 275 (344)
Q Consensus 227 A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv-------------------------------~ 275 (344)
|...|+++.+. .|+...+..++..+...|++++|...+.+.....- .
T Consensus 130 A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 207 (275)
T 1xnf_A 130 AQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDN 207 (275)
T ss_dssp HHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSH
T ss_pred HHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhcCHHHHHHHHHHHhccc
Confidence 99999999875 45555555555666777889999888866544210 1
Q ss_pred C-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 047934 276 P-----NVTTFVGLVDGLCRERGVEKAQSVIATLKEKG 308 (344)
Q Consensus 276 p-----d~~ty~~lL~a~~~~G~~e~a~~l~~~M~~~G 308 (344)
| +..++..+...|...|+.++|.+.++...+..
T Consensus 208 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 245 (275)
T 1xnf_A 208 TSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 245 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred ccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 1 13566677777778888888888888877653
No 51
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=98.37 E-value=2.1e-05 Score=72.39 Aligned_cols=167 Identities=13% Similarity=0.099 Sum_probs=122.3
Q ss_pred HHHHHHHHHHHHHCCCCCC----HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HH-HHHHHHHHHHHcCCHHHHHHH
Q 047934 157 PQEADEIFKKMKETGLIPN----AVAMLDGLCKDGLIQEAMKLFGLMREKGTIPE-VV-IYTAVVDGFCKAQKFDDAKRI 230 (344)
Q Consensus 157 ~~~A~~lf~~M~~~gi~p~----~~tli~~~~k~g~~~~A~~lf~~M~~~g~~pd-~~-tyn~LI~ay~k~g~~e~A~~v 230 (344)
+++|..+|++..+. +.|+ |..+...+.+.|++++|.++|+...+. .|+ .. +|..+...+.+.|++++|+.+
T Consensus 80 ~~~A~~~~~rAl~~-~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~ 156 (308)
T 2ond_A 80 SDEAANIYERAIST-LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMI 156 (308)
T ss_dssp HHHHHHHHHHHHTT-TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred hHHHHHHHHHHHHH-hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHH
Confidence 38999999988762 1232 446788888899999999999998874 343 33 889999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-
Q 047934 231 FRKMQSNGIAPNAFSYNLLIQGLY-KCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRERGVEKAQSVIATLKEKG- 308 (344)
Q Consensus 231 f~~M~~~gi~pd~~tyn~LI~ay~-k~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~~e~a~~l~~~M~~~G- 308 (344)
|++..+..- .+...|........ ..|+.++|.++|++..+.. .-+...|..++..+.+.|+.++|..+|+......
T Consensus 157 ~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~ 234 (308)
T 2ond_A 157 FKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS 234 (308)
T ss_dssp HHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSS
T ss_pred HHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccC
Confidence 999887532 23445544433322 2689999999999887642 2257778888888888999999999999998873
Q ss_pred Ccc--cHHHHHHHHhccCCCCh
Q 047934 309 FLV--NDKAVREFLDKKAPFSS 328 (344)
Q Consensus 309 i~p--~~~~~~~Ll~~yak~g~ 328 (344)
+.| ....|..++..+.+.|.
T Consensus 235 l~p~~~~~l~~~~~~~~~~~g~ 256 (308)
T 2ond_A 235 LPPEKSGEIWARFLAFESNIGD 256 (308)
T ss_dssp SCGGGCHHHHHHHHHHHHHHSC
T ss_pred CCHHHHHHHHHHHHHHHHHcCC
Confidence 555 35566666665555553
No 52
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=98.35 E-value=3.6e-05 Score=70.78 Aligned_cols=152 Identities=11% Similarity=0.000 Sum_probs=121.3
Q ss_pred CCCHHHHHHHHHHHHHCCC-CC--CHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-HcCCHHHHHH
Q 047934 154 SEPPQEADEIFKKMKETGL-IP--NAVAMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFC-KAQKFDDAKR 229 (344)
Q Consensus 154 sg~~~~A~~lf~~M~~~gi-~p--~~~tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~-k~g~~e~A~~ 229 (344)
.|++++|.++|++..+..- .+ -|..+...+.+.|++++|..+|+...+.. +.+...|........ ..|+.++|..
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 6789999999999987432 12 25567788888999999999999988754 234555554444433 3699999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 047934 230 IFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAG-HSP--NVTTFVGLVDGLCRERGVEKAQSVIATLKE 306 (344)
Q Consensus 230 vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~g-v~p--d~~ty~~lL~a~~~~G~~e~a~~l~~~M~~ 306 (344)
+|+...+.. .-+...|..++..+.+.|+.++|..+|++..... +.| ....|..++....+.|+.+.|..++..+.+
T Consensus 191 ~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~ 269 (308)
T 2ond_A 191 IFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp HHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999987752 2368899999999999999999999999999873 455 467888889999999999999999999886
Q ss_pred C
Q 047934 307 K 307 (344)
Q Consensus 307 ~ 307 (344)
.
T Consensus 270 ~ 270 (308)
T 2ond_A 270 A 270 (308)
T ss_dssp H
T ss_pred H
Confidence 4
No 53
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=98.30 E-value=1.9e-05 Score=77.01 Aligned_cols=155 Identities=18% Similarity=0.097 Sum_probs=128.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 047934 150 NEPISEPPQEADEIFKKMKETGLIPN-AVAMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAK 228 (344)
Q Consensus 150 ~~~~sg~~~~A~~lf~~M~~~gi~p~-~~tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~ 228 (344)
.+...|++++|.+.|++..+..-.+. +..+...|...|++++|.++|+...+.. +.+..+|..+...|...|++++|.
T Consensus 252 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 330 (537)
T 3fp2_A 252 FHFLKNNLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAK 330 (537)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHhcccHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHH
Confidence 33447889999999999987542211 2246677788999999999999988764 347889999999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 047934 229 RIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRERGVEKAQSVIATLKEK 307 (344)
Q Consensus 229 ~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~~e~a~~l~~~M~~~ 307 (344)
..|++..+.. .-+...|..+..+|.+.|++++|.++|+++.+.. .-+...+..+...|...|++++|.+.++.+.+.
T Consensus 331 ~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 407 (537)
T 3fp2_A 331 EDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRL 407 (537)
T ss_dssp HHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 9999998753 2256789999999999999999999999998763 335678888999999999999999999998754
No 54
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=98.29 E-value=9.7e-06 Score=79.85 Aligned_cols=156 Identities=10% Similarity=-0.009 Sum_probs=129.9
Q ss_pred CCCCCCCCH-HHHHHHHHHHHHCCCC--CCHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc----
Q 047934 149 RNEPISEPP-QEADEIFKKMKETGLI--PNAVAMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKA---- 221 (344)
Q Consensus 149 ~~~~~sg~~-~~A~~lf~~M~~~gi~--p~~~tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~---- 221 (344)
..+...|++ ++|++.|++..+.+-. ..+..+-..|.+.|++++|.+.|+...+. .|+..++..+-..|...
T Consensus 110 ~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~lg~~~~~~~~~~ 187 (474)
T 4abn_A 110 KALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQNLSMVLRQLQTDS 187 (474)
T ss_dssp HHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHHHHHHHTTCCCSC
T ss_pred HHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHHHHHHHHHhccCC
Confidence 344557889 9999999998875422 11345788899999999999999998875 47788999999999999
Q ss_pred -----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHcCCC--CCHHHHHHHHH
Q 047934 222 -----QKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKC--------NKLEEAVEYCIEMLEAGHS--PNVTTFVGLVD 286 (344)
Q Consensus 222 -----g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~--------g~~~~A~~lf~~M~~~gv~--pd~~ty~~lL~ 286 (344)
|++++|...|++..+.. .-+...|..+-.+|... |++++|++.|++..+..-. -+...|..+-.
T Consensus 188 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~ 266 (474)
T 4abn_A 188 GDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRAT 266 (474)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHH
T ss_pred hhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHH
Confidence 99999999999988753 22678899999999998 9999999999998875210 37888999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHC
Q 047934 287 GLCRERGVEKAQSVIATLKEK 307 (344)
Q Consensus 287 a~~~~G~~e~a~~l~~~M~~~ 307 (344)
+|...|++++|.+.++...+.
T Consensus 267 ~~~~~g~~~~A~~~~~~al~l 287 (474)
T 4abn_A 267 LHKYEESYGEALEGFSQAAAL 287 (474)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999998765
No 55
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=98.27 E-value=1.9e-05 Score=77.04 Aligned_cols=169 Identities=10% Similarity=0.016 Sum_probs=134.0
Q ss_pred CCHHHHHHHHHHHHHCCCCC-C--------HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH
Q 047934 155 EPPQEADEIFKKMKETGLIP-N--------AVAMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFD 225 (344)
Q Consensus 155 g~~~~A~~lf~~M~~~gi~p-~--------~~tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e 225 (344)
|++++|..+|+++.+..-.. + +..+-..+...|++++|.+.|+...+. .|+..+|..+-..|...|+++
T Consensus 216 ~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~ 293 (537)
T 3fp2_A 216 DLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQ 293 (537)
T ss_dssp HHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCH
T ss_pred HHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHH
Confidence 46899999999988654221 1 113456777889999999999999876 356889999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 047934 226 DAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRERGVEKAQSVIATLK 305 (344)
Q Consensus 226 ~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~~e~a~~l~~~M~ 305 (344)
+|...|+.+.+.. .-+..+|..+...|...|++++|.+.|++..... .-+..++..+...|...|++++|.+++..+.
T Consensus 294 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 371 (537)
T 3fp2_A 294 EFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETK 371 (537)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999998753 2368899999999999999999999999998763 2246788889999999999999999999998
Q ss_pred HCCCcccHHHHHHHHhccCCCCh
Q 047934 306 EKGFLVNDKAVREFLDKKAPFSS 328 (344)
Q Consensus 306 ~~Gi~p~~~~~~~Ll~~yak~g~ 328 (344)
+.. ..+...+..+-..|...|.
T Consensus 372 ~~~-~~~~~~~~~l~~~~~~~g~ 393 (537)
T 3fp2_A 372 LKF-PTLPEVPTFFAEILTDRGD 393 (537)
T ss_dssp HHC-TTCTHHHHHHHHHHHHTTC
T ss_pred HhC-CCChHHHHHHHHHHHHhCC
Confidence 763 2234566666666666664
No 56
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.27 E-value=3.4e-05 Score=80.40 Aligned_cols=150 Identities=15% Similarity=0.092 Sum_probs=126.0
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Q 047934 151 EPISEPPQEADEIFKKMKETGLIPN----AVAMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDD 226 (344)
Q Consensus 151 ~~~sg~~~~A~~lf~~M~~~gi~p~----~~tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~ 226 (344)
+...|++++|++.|++..+.. |+ +..+-.+|.+.|++++|++.|++..+.. +-+..+|..|-.+|.+.|++++
T Consensus 19 ~~~~G~~~eAi~~~~kAl~l~--P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~~l~~~g~~~~ 95 (723)
T 4gyw_A 19 KREQGNIEEAVRLYRKALEVF--PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTLKEMQDVQG 95 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 445789999999999988753 33 2357788899999999999999988753 2368899999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 047934 227 AKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSP-NVTTFVGLVDGLCRERGVEKAQSVIATLK 305 (344)
Q Consensus 227 A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~p-d~~ty~~lL~a~~~~G~~e~a~~l~~~M~ 305 (344)
|++.|++..+.. .-+...|+.+-.+|.+.|++++|++.|++..+. .| +...|..+...|...|++++|.+.++.+.
T Consensus 96 A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l--~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal 172 (723)
T 4gyw_A 96 ALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKL--KPDFPDAYCNLAHCLQIVCDWTDYDERMKKLV 172 (723)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHhhhhhHHHhcccHHHHHHHHHHHH
Confidence 999999988753 225789999999999999999999999998875 34 57888999999999999999988888765
Q ss_pred H
Q 047934 306 E 306 (344)
Q Consensus 306 ~ 306 (344)
+
T Consensus 173 ~ 173 (723)
T 4gyw_A 173 S 173 (723)
T ss_dssp H
T ss_pred H
Confidence 4
No 57
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.18 E-value=0.00016 Score=62.62 Aligned_cols=141 Identities=11% Similarity=-0.016 Sum_probs=108.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Q 047934 150 NEPISEPPQEADEIFKKMKETGLIPNAV---AMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDD 226 (344)
Q Consensus 150 ~~~~sg~~~~A~~lf~~M~~~gi~p~~~---tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~ 226 (344)
.++..|++++|++.|++..+..-.++.. .+-..|...|++++|++.|+...+..- -+..+|..+-..|...|++++
T Consensus 16 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~ 94 (228)
T 4i17_A 16 DALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNY-NLANAYIGKSAAYRDMKNNQE 94 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC-SHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCc-chHHHHHHHHHHHHHcccHHH
Confidence 3445788999999999988765323333 366778889999999999999887532 266788999999999999999
Q ss_pred HHHHHHHHHHCCCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHHcCCH
Q 047934 227 AKRIFRKMQSNGIAPNA-------FSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPN---VTTFVGLVDGLCRERGV 294 (344)
Q Consensus 227 A~~vf~~M~~~gi~pd~-------~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd---~~ty~~lL~a~~~~G~~ 294 (344)
|...|++..+..- -+. ..|..+-..+.+.|++++|++.|++..+. .|+ ...|..+-..|...|..
T Consensus 95 A~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~~~~~~~~~ 169 (228)
T 4i17_A 95 YIATLTEGIKAVP-GNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGVLFYNNGAD 169 (228)
T ss_dssp HHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCC-CcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHHHHHHHHHH
Confidence 9999999887521 134 45777778888999999999999998765 455 45666777777777766
No 58
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.17 E-value=7e-05 Score=74.86 Aligned_cols=152 Identities=8% Similarity=-0.083 Sum_probs=111.0
Q ss_pred CCCHHHHHHHHHHHHHCCCC-C-CHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 047934 154 SEPPQEADEIFKKMKETGLI-P-NAVAMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRIF 231 (344)
Q Consensus 154 sg~~~~A~~lf~~M~~~gi~-p-~~~tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf 231 (344)
+|++++|++.|++..+..-. + .+..+-..|.+.|++++|.+.|++..+.. +-+..++..+-.+|...|++++|.+.|
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 46788999999987754321 0 12346778889999999999999988753 336889999999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHCC
Q 047934 232 RKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRE---RGVEKAQSVIATLKEKG 308 (344)
Q Consensus 232 ~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~---G~~e~a~~l~~~M~~~G 308 (344)
++..+.. .-+...|..+-.+|.+.|++++|.+.|++..+.. .-+...+..+...+... |+.++|.+.+++..+.+
T Consensus 81 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 81 QQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 9988753 2357899999999999999999999999988763 23577888899999999 99999999999988764
No 59
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=98.16 E-value=0.00027 Score=58.95 Aligned_cols=147 Identities=10% Similarity=-0.020 Sum_probs=119.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 047934 178 AMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCN 257 (344)
Q Consensus 178 tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g 257 (344)
.+=..|.+.|++++|++.|+...+.. +-+..++..+-.+|.+.|++++|...+........ -+...+..+-..+...+
T Consensus 10 ~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 87 (184)
T 3vtx_A 10 DIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDT-TSAEAYYILGSANFMID 87 (184)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-hhHHHHHHHHHHHHHcC
Confidence 45677889999999999999988763 33788999999999999999999999999877532 36778888888999999
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCcccHHHHHHHHhccCCCCh
Q 047934 258 KLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRERGVEKAQSVIATLKEKGFLVNDKAVREFLDKKAPFSS 328 (344)
Q Consensus 258 ~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~~e~a~~l~~~M~~~Gi~p~~~~~~~Ll~~yak~g~ 328 (344)
+++.|.+.+.+..... .-+...+..+-..|.+.|++++|.+.++...+.. .-+..++..+-..|.+.|.
T Consensus 88 ~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~ 156 (184)
T 3vtx_A 88 EKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGL 156 (184)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCC
Confidence 9999999999987653 3367788889999999999999999999988753 2245566666666666665
No 60
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.14 E-value=0.00021 Score=54.46 Aligned_cols=93 Identities=22% Similarity=0.289 Sum_probs=57.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 047934 178 AMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCN 257 (344)
Q Consensus 178 tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g 257 (344)
.+...+...|++++|.++|+.+.+.. +.+..++..+...|.+.|++++|..+|+.+.+.. ..+..+|..+...|.+.|
T Consensus 14 ~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~ 91 (125)
T 1na0_A 14 NLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQG 91 (125)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhc
Confidence 34555666667777777666665542 2345666666666666666666666666665542 224556666666666666
Q ss_pred CHHHHHHHHHHHHHc
Q 047934 258 KLEEAVEYCIEMLEA 272 (344)
Q Consensus 258 ~~~~A~~lf~~M~~~ 272 (344)
++++|.+.|+++...
T Consensus 92 ~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 92 DYDEAIEYYQKALEL 106 (125)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh
Confidence 666666666666554
No 61
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.14 E-value=0.00023 Score=60.59 Aligned_cols=125 Identities=13% Similarity=0.042 Sum_probs=90.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 047934 179 MLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNK 258 (344)
Q Consensus 179 li~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~ 258 (344)
+-..+...|++++|.+.|+.. +.++..+|..+-..|...|++++|...|+...+.. ..+...|..+-.+|.+.|+
T Consensus 12 ~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 12 EGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHccc
Confidence 344566778888888887765 35677788888888888888888888888776643 2356777788888888888
Q ss_pred HHHHHHHHHHHHHcCC--------------CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 047934 259 LEEAVEYCIEMLEAGH--------------SP-NVTTFVGLVDGLCRERGVEKAQSVIATLKEKG 308 (344)
Q Consensus 259 ~~~A~~lf~~M~~~gv--------------~p-d~~ty~~lL~a~~~~G~~e~a~~l~~~M~~~G 308 (344)
+++|.+.|++..+..- .| ....+..+-.+|...|++++|.+.++...+..
T Consensus 87 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 87 YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 8888888888776421 11 12566677777788888888888888877654
No 62
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=98.10 E-value=0.00011 Score=64.90 Aligned_cols=176 Identities=11% Similarity=-0.054 Sum_probs=129.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 047934 150 NEPISEPPQEADEIFKKMKETGLIPN-----AVAMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKF 224 (344)
Q Consensus 150 ~~~~sg~~~~A~~lf~~M~~~gi~p~-----~~tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~ 224 (344)
.++..|++++|++.|++..+..-.+. +..+-..|...|++++|++.|+...+.. +-+..+|..+-..|...|++
T Consensus 46 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~ 124 (272)
T 3u4t_A 46 CYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNF 124 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCH
T ss_pred HHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCH
Confidence 34457889999999999988443333 2457888999999999999999988763 23668999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC---HHHHHHHH
Q 047934 225 DDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRERG---VEKAQSVI 301 (344)
Q Consensus 225 e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~---~e~a~~l~ 301 (344)
++|...|++..+. ..-+...|..+-..+...+++++|.+.|++..+.. ..+...+..+...+...|+ .++|...+
T Consensus 125 ~~A~~~~~~al~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 202 (272)
T 3u4t_A 125 PLAIQYMEKQIRP-TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYY 202 (272)
T ss_dssp HHHHHHHGGGCCS-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHH
T ss_pred HHHHHHHHHHhhc-CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHH
Confidence 9999999988765 23356677777634555669999999999998753 2246777778888888887 77788888
Q ss_pred HHHHHCC-Cccc------HHHHHHHHhccCCCCh
Q 047934 302 ATLKEKG-FLVN------DKAVREFLDKKAPFSS 328 (344)
Q Consensus 302 ~~M~~~G-i~p~------~~~~~~Ll~~yak~g~ 328 (344)
+...+.. -.|+ ..++..+-..|...|.
T Consensus 203 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 236 (272)
T 3u4t_A 203 EKLIEVCAPGGAKYKDELIEANEYIAYYYTINRD 236 (272)
T ss_dssp HHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhcccccchHHHHHHHHHHHHHHHHcCC
Confidence 8776542 1222 2445555555555554
No 63
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.06 E-value=0.00015 Score=64.39 Aligned_cols=157 Identities=11% Similarity=-0.039 Sum_probs=117.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCC-C-H---HHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHH--
Q 047934 150 NEPISEPPQEADEIFKKMKETGLIP-N-A---VAMLDGLCKDGLIQEAMKLFGLMREKGT--IPEVVIYTAVVDGFCK-- 220 (344)
Q Consensus 150 ~~~~sg~~~~A~~lf~~M~~~gi~p-~-~---~tli~~~~k~g~~~~A~~lf~~M~~~g~--~pd~~tyn~LI~ay~k-- 220 (344)
.++..|++++|+..|+++.+..-.. . . ..+-..|.+.|++++|...|+...+..- .....++..+-.+|..
T Consensus 24 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~ 103 (261)
T 3qky_A 24 EFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLS 103 (261)
T ss_dssp HHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHC
T ss_pred HHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhc
Confidence 3445789999999999998754221 1 1 2466778899999999999999987631 1234567777778888
Q ss_pred ------cCCHHHHHHHHHHHHHCCCCCCHHHH-----------------HHHHHHHHHcCCHHHHHHHHHHHHHcCCC-C
Q 047934 221 ------AQKFDDAKRIFRKMQSNGIAPNAFSY-----------------NLLIQGLYKCNKLEEAVEYCIEMLEAGHS-P 276 (344)
Q Consensus 221 ------~g~~e~A~~vf~~M~~~gi~pd~~ty-----------------n~LI~ay~k~g~~~~A~~lf~~M~~~gv~-p 276 (344)
.|++++|...|+++.+..-. +...+ -.+-..|.+.|++++|+..|++..+..-. +
T Consensus 104 ~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~ 182 (261)
T 3qky_A 104 PPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTP 182 (261)
T ss_dssp CCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTST
T ss_pred ccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCc
Confidence 99999999999999875211 22223 45577888999999999999999875311 1
Q ss_pred -CHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHC
Q 047934 277 -NVTTFVGLVDGLCRE----------RGVEKAQSVIATLKEK 307 (344)
Q Consensus 277 -d~~ty~~lL~a~~~~----------G~~e~a~~l~~~M~~~ 307 (344)
....+..+..+|... |++++|...++.+.+.
T Consensus 183 ~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 183 WADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp THHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 345677777777766 8999999999998875
No 64
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.05 E-value=0.00014 Score=71.94 Aligned_cols=170 Identities=12% Similarity=0.108 Sum_probs=125.3
Q ss_pred CCCHH-------HHHHHHHHHHHCCCCCC----HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHH
Q 047934 154 SEPPQ-------EADEIFKKMKETGLIPN----AVAMLDGLCKDGLIQEAMKLFGLMREKGTIPE--VVIYTAVVDGFCK 220 (344)
Q Consensus 154 sg~~~-------~A~~lf~~M~~~gi~p~----~~tli~~~~k~g~~~~A~~lf~~M~~~g~~pd--~~tyn~LI~ay~k 220 (344)
.|+++ +|+.+|++..+. +.|+ |..+...+.+.|++++|.++|+...+. .|+ ..+|..++..+.+
T Consensus 292 ~g~~~~a~~~~~~A~~~~~~Al~~-~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~ 368 (530)
T 2ooe_A 292 KGDMNNAKLFSDEAANIYERAIST-LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARR 368 (530)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTT-TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHH
T ss_pred ccchhhhhhhhHHHHHHHHHHHHH-hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHH
Confidence 46766 899999987752 2343 346788888999999999999999874 443 3589999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 047934 221 AQKFDDAKRIFRKMQSNGIAPNAFSYNLLI-QGLYKCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRERGVEKAQS 299 (344)
Q Consensus 221 ~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI-~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~~e~a~~ 299 (344)
.|++++|+.+|++..+..- .+...|-... -.+...|+.++|.++|++..+.. .-+...|..++..+.+.|+.++|+.
T Consensus 369 ~~~~~~A~~~~~~Al~~~~-~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~ 446 (530)
T 2ooe_A 369 AEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRV 446 (530)
T ss_dssp HHHHHHHHHHHHHHHTCTT-CCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHH
T ss_pred hcCHHHHHHHHHHHHhccC-CchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHH
Confidence 9999999999999887521 1222222221 12346899999999999887652 2257888889999999999999999
Q ss_pred HHHHHHHCC-Cccc--HHHHHHHHhccCCCCh
Q 047934 300 VIATLKEKG-FLVN--DKAVREFLDKKAPFSS 328 (344)
Q Consensus 300 l~~~M~~~G-i~p~--~~~~~~Ll~~yak~g~ 328 (344)
+|+.....+ ..|+ ...|..+++.....|.
T Consensus 447 ~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~ 478 (530)
T 2ooe_A 447 LFERVLTSGSLPPEKSGEIWARFLAFESNIGD 478 (530)
T ss_dssp HHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSC
T ss_pred HHHHHHhccCCCHHHHHHHHHHHHHHHHHcCC
Confidence 999998864 3443 4466666665555554
No 65
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.05 E-value=0.00031 Score=60.77 Aligned_cols=146 Identities=10% Similarity=-0.046 Sum_probs=114.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 047934 178 AMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCN 257 (344)
Q Consensus 178 tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g 257 (344)
..-..+...|++++|.+.|+...+..-.++..++..+-.+|...|++++|...|++..+..-. +...|..+-.+|...|
T Consensus 12 ~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~ 90 (228)
T 4i17_A 12 NEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKSAAYRDMK 90 (228)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHcc
Confidence 355677889999999999999988754467788888999999999999999999999876322 5678899999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccc---HHHHHHHHhccCCCC
Q 047934 258 KLEEAVEYCIEMLEAGHSPNV-------TTFVGLVDGLCRERGVEKAQSVIATLKEKGFLVN---DKAVREFLDKKAPFS 327 (344)
Q Consensus 258 ~~~~A~~lf~~M~~~gv~pd~-------~ty~~lL~a~~~~G~~e~a~~l~~~M~~~Gi~p~---~~~~~~Ll~~yak~g 327 (344)
++++|++.|++..+..- -+. ..|..+-..+...|++++|.+.+....+. .|+ ...+..+-..|...|
T Consensus 91 ~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~~~~~~~ 167 (228)
T 4i17_A 91 NNQEYIATLTEGIKAVP-GNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGVLFYNNG 167 (228)
T ss_dssp CHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHHHHHHHH
Confidence 99999999999887531 234 45677777788899999999999998875 454 334444444443333
No 66
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.02 E-value=0.00049 Score=55.63 Aligned_cols=125 Identities=9% Similarity=0.039 Sum_probs=100.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 047934 178 AMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCN 257 (344)
Q Consensus 178 tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g 257 (344)
.+-..+...|++++|...|+...+.. +.+..++..+-.+|...|++++|...|++..+.. ..+...|..+-.+|.+.|
T Consensus 18 ~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~ 95 (166)
T 1a17_A 18 TQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALG 95 (166)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhc
Confidence 46677888999999999999887753 3368889999999999999999999999988753 336788999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHH--HHHHHHHHHcCCHHHHHHHHHHHH
Q 047934 258 KLEEAVEYCIEMLEAGHSPNVTTF--VGLVDGLCRERGVEKAQSVIATLK 305 (344)
Q Consensus 258 ~~~~A~~lf~~M~~~gv~pd~~ty--~~lL~a~~~~G~~e~a~~l~~~M~ 305 (344)
++++|.+.|++.....- -+...+ ..+...+...|++++|.+.+....
T Consensus 96 ~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 96 KFRAALRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp CHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 99999999999887532 244444 334444777899999999988754
No 67
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.02 E-value=0.00011 Score=68.84 Aligned_cols=142 Identities=13% Similarity=0.107 Sum_probs=109.0
Q ss_pred HHHHHHHHHHCCCCCCHH---HHHHHHHHcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 047934 160 ADEIFKKMKETGLIPNAV---AMLDGLCKDGLIQEAMKLFGLMREKGT-IPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQ 235 (344)
Q Consensus 160 A~~lf~~M~~~gi~p~~~---tli~~~~k~g~~~~A~~lf~~M~~~g~-~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~ 235 (344)
|+..|++..+.+ .++.. .+-.++...|+.++|++++..-...+- .-+...+-.++..|.+.|+.+.|.++++.|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 567777766654 22332 467778889999999999998766543 2377888999999999999999999999998
Q ss_pred HCCCCC-----CHHHHHHHHHHHHH--cC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 047934 236 SNGIAP-----NAFSYNLLIQGLYK--CN--KLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRERGVEKAQSVIATLKE 306 (344)
Q Consensus 236 ~~gi~p-----d~~tyn~LI~ay~k--~g--~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~~e~a~~l~~~M~~ 306 (344)
+. .| +..+...|..+++. .| ..++|..+|+++.+. .|+..+-..++.++.+.|++++|+++++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 75 45 35666677767433 34 899999999998765 46645555666688899999999999997665
No 68
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=97.99 E-value=0.00028 Score=53.71 Aligned_cols=99 Identities=19% Similarity=0.266 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 047934 208 VVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVDG 287 (344)
Q Consensus 208 ~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a 287 (344)
..+|..+...|...|++++|..+|+++.+.. ..+..+|..+...|.+.|++++|..+|+++.... ..+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 5778888999999999999999999998753 3367889999999999999999999999998753 3367888899999
Q ss_pred HHHcCCHHHHHHHHHHHHHCC
Q 047934 288 LCRERGVEKAQSVIATLKEKG 308 (344)
Q Consensus 288 ~~~~G~~e~a~~l~~~M~~~G 308 (344)
|...|++++|.++++.+.+..
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~ 107 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELD 107 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHHhC
Confidence 999999999999999988753
No 69
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=97.96 E-value=0.00038 Score=65.03 Aligned_cols=149 Identities=9% Similarity=0.026 Sum_probs=110.6
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-----CHHHHHHHHHHHHH--c
Q 047934 153 ISEPPQEADEIFKKMKETGLIPNA----VAMLDGLCKDGLIQEAMKLFGLMREKGTIP-----EVVIYTAVVDGFCK--A 221 (344)
Q Consensus 153 ~sg~~~~A~~lf~~M~~~gi~p~~----~tli~~~~k~g~~~~A~~lf~~M~~~g~~p-----d~~tyn~LI~ay~k--~ 221 (344)
..|++++|++++.+....+-.+.. ..++..|.+.|+.+.|.+.++.|.+. .| +..+..-|..++.. .
T Consensus 112 ~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~~d~~~~~d~~l~~Laea~v~l~~ 189 (310)
T 3mv2_B 112 ILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--IEDTVSGDNEMILNLAESYIKFAT 189 (310)
T ss_dssp HHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CccccccchHHHHHHHHHHHHHHh
Confidence 368999999999987665421111 25789999999999999999999875 45 35666666666333 3
Q ss_pred C--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CC----CCCHHHHHHHHHHHHH
Q 047934 222 Q--KFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEA-----GH----SPNVTTFVGLVDGLCR 290 (344)
Q Consensus 222 g--~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~-----gv----~pd~~ty~~lL~a~~~ 290 (344)
| +..+|..+|+++.+. .|+..+-..++.++.+.|++++|.+.++.+.+. .. .-|..+...+|..+..
T Consensus 190 g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~ 267 (310)
T 3mv2_B 190 NKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALM 267 (310)
T ss_dssp TCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHH
Confidence 4 899999999999775 355444455555899999999999999976653 11 2356677567666677
Q ss_pred cCCHHHHHHHHHHHHHC
Q 047934 291 ERGVEKAQSVIATLKEK 307 (344)
Q Consensus 291 ~G~~e~a~~l~~~M~~~ 307 (344)
.|+ +|.+++.++.+.
T Consensus 268 lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 268 QGL--DTEDLTNQLVKL 282 (310)
T ss_dssp TTC--TTHHHHHHHHHT
T ss_pred hCh--HHHHHHHHHHHh
Confidence 787 889999999876
No 70
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=97.96 E-value=0.00023 Score=64.62 Aligned_cols=157 Identities=8% Similarity=-0.051 Sum_probs=116.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCC-CCCHH-------HHHHHHHHcCCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHH
Q 047934 150 NEPISEPPQEADEIFKKMKETGL-IPNAV-------AMLDGLCKDGLIQEAMKLFGLMREKGTI-PE----VVIYTAVVD 216 (344)
Q Consensus 150 ~~~~sg~~~~A~~lf~~M~~~gi-~p~~~-------tli~~~~k~g~~~~A~~lf~~M~~~g~~-pd----~~tyn~LI~ 216 (344)
.+...|++++|.+++++..+... .|+.. .+...+...+++++|+..|+...+.... .+ ..+|+.+-.
T Consensus 84 ~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~ 163 (293)
T 3u3w_A 84 MLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIAN 163 (293)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHH
Confidence 44557899999999999887432 22211 2444555667999999999998874322 23 347899999
Q ss_pred HHHHcCCHHHHHHHHHHHHH----C-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHH
Q 047934 217 GFCKAQKFDDAKRIFRKMQS----N-GIAPN-AFSYNLLIQGLYKCNKLEEAVEYCIEMLEA----GHSPN-VTTFVGLV 285 (344)
Q Consensus 217 ay~k~g~~e~A~~vf~~M~~----~-gi~pd-~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~----gv~pd-~~ty~~lL 285 (344)
.|...|++++|...|++..+ . +..+. ..+|..+-..|.+.|++++|.+.+++..+. +..+. ..+|..+-
T Consensus 164 ~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg 243 (293)
T 3u3w_A 164 IYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRG 243 (293)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 99999999999999999874 1 21222 347889999999999999999999987642 32333 67788888
Q ss_pred HHHHHcC-CHHHHHHHHHHHHH
Q 047934 286 DGLCRER-GVEKAQSVIATLKE 306 (344)
Q Consensus 286 ~a~~~~G-~~e~a~~l~~~M~~ 306 (344)
.+|.+.| ..++|.+.++....
T Consensus 244 ~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 244 ECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHhCCcHHHHHHHHHHHHH
Confidence 8899999 57999998887654
No 71
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=97.96 E-value=0.00072 Score=58.91 Aligned_cols=154 Identities=11% Similarity=0.048 Sum_probs=110.8
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CCH-HHHHHHHHHHHH---
Q 047934 151 EPISEPPQEADEIFKKMKETGLI-PN----AVAMLDGLCKDGLIQEAMKLFGLMREKGTI-PEV-VIYTAVVDGFCK--- 220 (344)
Q Consensus 151 ~~~sg~~~~A~~lf~~M~~~gi~-p~----~~tli~~~~k~g~~~~A~~lf~~M~~~g~~-pd~-~tyn~LI~ay~k--- 220 (344)
++..|++++|+..|+++.+..-. |. +.-+..+|.+.|++++|...|+.+.+..-. +.. ..+-.+-.++..
T Consensus 14 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~ 93 (225)
T 2yhc_A 14 KLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDD 93 (225)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhh
Confidence 34468899999999999875322 21 224677889999999999999998875322 221 123223333332
Q ss_pred ---------------cCCHHHHHHHHHHHHHCCCCCC-HHHH-----------------HHHHHHHHHcCCHHHHHHHHH
Q 047934 221 ---------------AQKFDDAKRIFRKMQSNGIAPN-AFSY-----------------NLLIQGLYKCNKLEEAVEYCI 267 (344)
Q Consensus 221 ---------------~g~~e~A~~vf~~M~~~gi~pd-~~ty-----------------n~LI~ay~k~g~~~~A~~lf~ 267 (344)
.|+.++|...|+++.+.- |+ ...+ -.+-..|.+.|++++|...|+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 171 (225)
T 2yhc_A 94 SALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVE 171 (225)
T ss_dssp --------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred hhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 578999999999998752 33 2222 234556889999999999999
Q ss_pred HHHHcCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 047934 268 EMLEAGHSPN----VTTFVGLVDGLCRERGVEKAQSVIATLKEKG 308 (344)
Q Consensus 268 ~M~~~gv~pd----~~ty~~lL~a~~~~G~~e~a~~l~~~M~~~G 308 (344)
++.+.- |+ ...+..+..+|.+.|+.++|.+.++.+...+
T Consensus 172 ~~l~~~--p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 172 GMLRDY--PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp HHHHHS--TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred HHHHHC--cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 998752 33 2567888999999999999999999888764
No 72
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=97.94 E-value=0.00043 Score=72.02 Aligned_cols=145 Identities=11% Similarity=0.025 Sum_probs=118.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 047934 178 AMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCN 257 (344)
Q Consensus 178 tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g 257 (344)
.|=..|.+.|++++|++.|++..+.. +-+..+|+.|-.+|.+.|++++|+..|++..+.. .-+...|..+-.+|.+.|
T Consensus 14 nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~~l~~~g 91 (723)
T 4gyw_A 14 NLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTLKEMQ 91 (723)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 46677889999999999999988753 2368899999999999999999999999988753 125789999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCcc-cHHHHHHHHhccCCCC
Q 047934 258 KLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRERGVEKAQSVIATLKEKGFLV-NDKAVREFLDKKAPFS 327 (344)
Q Consensus 258 ~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~~e~a~~l~~~M~~~Gi~p-~~~~~~~Ll~~yak~g 327 (344)
++++|++.|++..+.. .-+...|..+-..|...|++++|.+.++...+. .| +...+..|...|...|
T Consensus 92 ~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l--~P~~~~a~~~L~~~l~~~g 159 (723)
T 4gyw_A 92 DVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKL--KPDFPDAYCNLAHCLQIVC 159 (723)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHhhhhhHHHhcc
Confidence 9999999999988752 225788999999999999999999999998875 33 3455555555554444
No 73
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=97.92 E-value=0.002 Score=62.82 Aligned_cols=146 Identities=15% Similarity=0.107 Sum_probs=101.4
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHH
Q 047934 154 SEPPQEADEIFKKMKETGLIPNAVAMLDGLCK----DGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCK----AQKFD 225 (344)
Q Consensus 154 sg~~~~A~~lf~~M~~~gi~p~~~tli~~~~k----~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k----~g~~e 225 (344)
.+++++|.+.|....+.|.......|-..|.. .++.++|.+.|+...+.| +...+..|=.+|.. .++++
T Consensus 56 ~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~ 132 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKA 132 (490)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHH
T ss_pred CcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHH
Confidence 46788888888887776644323344555555 678888888888777664 55666667777776 67788
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHHHH
Q 047934 226 DAKRIFRKMQSNGIAPNAFSYNLLIQGLYK----CNKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCR----ERGVEKA 297 (344)
Q Consensus 226 ~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k----~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~----~G~~e~a 297 (344)
+|...|++..+.| +...+..|-..|.. .++.++|++.|++..+.| +...+..+-..|.. .++.++|
T Consensus 133 ~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A 206 (490)
T 2xm6_A 133 ESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAIS 206 (490)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHH
Confidence 8888888777765 56666666666766 667777877777777664 56666666666666 6777777
Q ss_pred HHHHHHHHHCC
Q 047934 298 QSVIATLKEKG 308 (344)
Q Consensus 298 ~~l~~~M~~~G 308 (344)
.+++....+.|
T Consensus 207 ~~~~~~a~~~~ 217 (490)
T 2xm6_A 207 AQWYRKSATSG 217 (490)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHCC
Confidence 77777766654
No 74
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=97.90 E-value=0.0002 Score=70.35 Aligned_cols=167 Identities=12% Similarity=-0.001 Sum_probs=132.1
Q ss_pred HHHHHHHHHHHHHCCCCCCH---HHHHHHHHHcCCH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 047934 157 PQEADEIFKKMKETGLIPNA---VAMLDGLCKDGLI-QEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRIFR 232 (344)
Q Consensus 157 ~~~A~~lf~~M~~~gi~p~~---~tli~~~~k~g~~-~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf~ 232 (344)
+++|++.+++.....-. +. ..+-..|...|++ ++|++.|+...+.. +-+..+|..+-.+|.+.|++++|...|+
T Consensus 84 ~~~al~~l~~~~~~~~~-~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQV-EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCch-hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 66777777765543321 22 2355667788999 99999999988763 2368899999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc--------CCHH
Q 047934 233 KMQSNGIAPNAFSYNLLIQGLYKC---------NKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRE--------RGVE 295 (344)
Q Consensus 233 ~M~~~gi~pd~~tyn~LI~ay~k~---------g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~--------G~~e 295 (344)
+..+. .|+...|..+-..|... |++++|++.|++..+.. .-+...|..+-.+|... |+++
T Consensus 162 ~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 99876 57788999999999999 99999999999988763 23578888899999988 9999
Q ss_pred HHHHHHHHHHHCCCc--ccHHHHHHHHhccCCCCh
Q 047934 296 KAQSVIATLKEKGFL--VNDKAVREFLDKKAPFSS 328 (344)
Q Consensus 296 ~a~~l~~~M~~~Gi~--p~~~~~~~Ll~~yak~g~ 328 (344)
+|.+.++...+..-. -+...+..+-..|...|.
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~ 273 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEES 273 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCC
Confidence 999999999875310 256667666666666664
No 75
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=97.90 E-value=0.00043 Score=68.35 Aligned_cols=152 Identities=12% Similarity=0.042 Sum_probs=115.5
Q ss_pred CCCHHHHHHHHHHHHHCCCC-C--CHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHHcCCHHHHHH
Q 047934 154 SEPPQEADEIFKKMKETGLI-P--NAVAMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDG-FCKAQKFDDAKR 229 (344)
Q Consensus 154 sg~~~~A~~lf~~M~~~gi~-p--~~~tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~a-y~k~g~~e~A~~ 229 (344)
.|++++|..+|++..+..-. + -|..+...+.+.|+.++|.++|+...+..- .+...|-..... +...|+.++|..
T Consensus 334 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~-~~~~~~~~~a~~~~~~~~~~~~A~~ 412 (530)
T 2ooe_A 334 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFK 412 (530)
T ss_dssp TTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT-CCTHHHHHHHHHHHHHTCCHHHHHH
T ss_pred cCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccC-CchHHHHHHHHHHHHHcCChhHHHH
Confidence 68999999999999885321 1 133566667788999999999999887521 223333222222 346899999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 047934 230 IFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAG-HSPN--VTTFVGLVDGLCRERGVEKAQSVIATLKE 306 (344)
Q Consensus 230 vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~g-v~pd--~~ty~~lL~a~~~~G~~e~a~~l~~~M~~ 306 (344)
+|+...+.. .-+...|..++..+.+.|+.++|..+|++..... ..|+ ...|...+......|+.+.+..+...+.+
T Consensus 413 ~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~ 491 (530)
T 2ooe_A 413 IFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 491 (530)
T ss_dssp HHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999887652 2368899999999999999999999999998863 2332 55788888888889999999999998876
Q ss_pred C
Q 047934 307 K 307 (344)
Q Consensus 307 ~ 307 (344)
.
T Consensus 492 ~ 492 (530)
T 2ooe_A 492 A 492 (530)
T ss_dssp H
T ss_pred H
Confidence 4
No 76
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=97.90 E-value=0.00054 Score=65.75 Aligned_cols=172 Identities=8% Similarity=-0.056 Sum_probs=133.1
Q ss_pred CCCCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 047934 152 PISEPPQEADEIFKKMKETGLI--PNAVAMLDGLCKDGL-IQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAK 228 (344)
Q Consensus 152 ~~sg~~~~A~~lf~~M~~~gi~--p~~~tli~~~~k~g~-~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~ 228 (344)
...|++++|++.|++..+.+=. .-|..+-..|...|+ +++|+..|+...+..- -+..+|+.+-.+|...|++++|+
T Consensus 108 ~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P-~~~~a~~~~g~~~~~~g~~~eAl 186 (382)
T 2h6f_A 108 QRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-KNYQVWHHRRVLVEWLRDPSQEL 186 (382)
T ss_dssp HHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCTTHH
T ss_pred HHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHccCHHHHH
Confidence 3467899999999998875421 013346677888997 9999999999988643 37889999999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-cCCHHHH-----HHHHH
Q 047934 229 RIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCR-ERGVEKA-----QSVIA 302 (344)
Q Consensus 229 ~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~-~G~~e~a-----~~l~~ 302 (344)
..|+++.+..- -+...|..+-.+|.+.|++++|+..|+++.+..- -+...|+.+-.++.. .|..++| .+.+.
T Consensus 187 ~~~~kal~ldP-~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P-~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~ 264 (382)
T 2h6f_A 187 EFIADILNQDA-KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV-RNNSVWNQRYFVISNTTGYNDRAVLEREVQYTL 264 (382)
T ss_dssp HHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHH
T ss_pred HHHHHHHHhCc-cCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHH
Confidence 99999988632 2788999999999999999999999999998642 267888888888888 6665666 47777
Q ss_pred HHHHCCCcccHHHHHHHHhccCCCC
Q 047934 303 TLKEKGFLVNDKAVREFLDKKAPFS 327 (344)
Q Consensus 303 ~M~~~Gi~p~~~~~~~Ll~~yak~g 327 (344)
...+..= -+...|..+-..+.+.|
T Consensus 265 ~Al~l~P-~~~~a~~~l~~ll~~~g 288 (382)
T 2h6f_A 265 EMIKLVP-HNESAWNYLKGILQDRG 288 (382)
T ss_dssp HHHHHST-TCHHHHHHHHHHHTTTC
T ss_pred HHHHHCC-CCHHHHHHHHHHHHccC
Confidence 7665421 13456666666666665
No 77
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=97.89 E-value=8.3e-05 Score=62.60 Aligned_cols=152 Identities=16% Similarity=0.056 Sum_probs=108.2
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHcCCHHHHHHHHHHHHHc----CCC-CCHHHHHHHHHHHHHcCC
Q 047934 153 ISEPPQEADEIFKKMKETGLIPNA----VAMLDGLCKDGLIQEAMKLFGLMREK----GTI-PEVVIYTAVVDGFCKAQK 223 (344)
Q Consensus 153 ~sg~~~~A~~lf~~M~~~gi~p~~----~tli~~~~k~g~~~~A~~lf~~M~~~----g~~-pd~~tyn~LI~ay~k~g~ 223 (344)
..|++++|.++++.+... .+.. ..+-..|...|++++|...|++..+. +.. ....++..+-..|...|+
T Consensus 4 ~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAH--PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ---CHHHHHHHHHHHHTS--TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred ccccHHHHHHHHHHhcCC--hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 468899999966555432 1122 24677788899999999999987652 221 235678888889999999
Q ss_pred HHHHHHHHHHHHHC----CCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCC----HHHHHHHHHHHHHcC
Q 047934 224 FDDAKRIFRKMQSN----GIAP--NAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAG-HSPN----VTTFVGLVDGLCRER 292 (344)
Q Consensus 224 ~e~A~~vf~~M~~~----gi~p--d~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~g-v~pd----~~ty~~lL~a~~~~G 292 (344)
+++|...|++..+. +-.+ ....+..+-..|...|++++|.+.+++..... -..+ ..++..+-..+...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 99999999887553 2111 24567888889999999999999999876421 0112 233567777888999
Q ss_pred CHHHHHHHHHHHHH
Q 047934 293 GVEKAQSVIATLKE 306 (344)
Q Consensus 293 ~~e~a~~l~~~M~~ 306 (344)
++++|.+.+.+..+
T Consensus 162 ~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 162 NLLEAQQHWLRARD 175 (203)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999887664
No 78
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=97.88 E-value=0.00083 Score=58.25 Aligned_cols=155 Identities=13% Similarity=-0.057 Sum_probs=106.0
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHcC----CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHH
Q 047934 154 SEPPQEADEIFKKMKETGLIPNAVAMLDGLCKDG----LIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCK----AQKFD 225 (344)
Q Consensus 154 sg~~~~A~~lf~~M~~~gi~p~~~tli~~~~k~g----~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k----~g~~e 225 (344)
.+++++|++.|++..+.|....+..|=..|.. + +.++|+++|+...+.| +...+..|=.+|.. .++++
T Consensus 31 ~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~ 106 (212)
T 3rjv_A 31 SGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEIVLARVLVNRQAGATDVA 106 (212)
T ss_dssp HTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCccCHH
Confidence 46788888888888877744222233333444 5 7888888888887765 56677777777766 77888
Q ss_pred HHHHHHHHHHHCCCC-CCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc-C-----CH
Q 047934 226 DAKRIFRKMQSNGIA-PNAFSYNLLIQGLYK----CNKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRE-R-----GV 294 (344)
Q Consensus 226 ~A~~vf~~M~~~gi~-pd~~tyn~LI~ay~k----~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~-G-----~~ 294 (344)
+|...|++..+.|.. -+...+..|-..|.. .++.++|++.|++..+.+ .+...+..|-..|... | +.
T Consensus 107 ~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~ 184 (212)
T 3rjv_A 107 HAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLS--RTGYAEYWAGMMFQQGEKGFIEPNK 184 (212)
T ss_dssp HHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTS--CTTHHHHHHHHHHHHCBTTTBCCCH
T ss_pred HHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCCCCCH
Confidence 888888887766421 016677777777777 778888888888887762 2344555555555543 3 78
Q ss_pred HHHHHHHHHHHHCCCcccHH
Q 047934 295 EKAQSVIATLKEKGFLVNDK 314 (344)
Q Consensus 295 e~a~~l~~~M~~~Gi~p~~~ 314 (344)
++|.+.++...+.|...-..
T Consensus 185 ~~A~~~~~~A~~~g~~~A~~ 204 (212)
T 3rjv_A 185 QKALHWLNVSCLEGFDTGCE 204 (212)
T ss_dssp HHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHH
Confidence 88888888888777654433
No 79
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=97.87 E-value=0.00083 Score=51.45 Aligned_cols=113 Identities=19% Similarity=0.127 Sum_probs=79.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 047934 178 AMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCN 257 (344)
Q Consensus 178 tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g 257 (344)
.+...+...|++++|.+.|+...+.. +.+..++..+...|...|++++|...++...+.. ..+...|..+...|.+.|
T Consensus 17 ~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 94 (131)
T 2vyi_A 17 TEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALSSLN 94 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHHHhC
Confidence 45666777888888888888776652 2367777778888888888888888888877642 224667777778888888
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 047934 258 KLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRERG 293 (344)
Q Consensus 258 ~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~ 293 (344)
++++|.+.|++..... .-+...+..+...+...|+
T Consensus 95 ~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 95 KHVEAVAYYKKALELD-PDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp CHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhc
Confidence 8888888888776652 1245566666666665554
No 80
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.87 E-value=0.00015 Score=66.19 Aligned_cols=156 Identities=8% Similarity=-0.027 Sum_probs=114.9
Q ss_pred CCCCCCHHHHHHHHHHHHHC----CCCCC----HHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHH
Q 047934 151 EPISEPPQEADEIFKKMKET----GLIPN----AVAMLDGLCKDGLIQEAMKLFGLMREK----GTIP-EVVIYTAVVDG 217 (344)
Q Consensus 151 ~~~sg~~~~A~~lf~~M~~~----gi~p~----~~tli~~~~k~g~~~~A~~lf~~M~~~----g~~p-d~~tyn~LI~a 217 (344)
+...|++++|.+.|.+..+. |-.+. +..+-..|.+.|++++|+..|+...+. |-.. -..+++.+-.+
T Consensus 47 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~ 126 (292)
T 1qqe_A 47 YRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEI 126 (292)
T ss_dssp HHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34478899999999876543 22111 224677888999999999999876543 2111 14578889999
Q ss_pred HHHc-CCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH------HHHHHHH
Q 047934 218 FCKA-QKFDDAKRIFRKMQSNGIA-PN----AFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNV------TTFVGLV 285 (344)
Q Consensus 218 y~k~-g~~e~A~~vf~~M~~~gi~-pd----~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~------~ty~~lL 285 (344)
|... |++++|...|++..+..-. .+ ..+|..+-..|.+.|++++|+..|++..+....... .+|..+.
T Consensus 127 ~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 206 (292)
T 1qqe_A 127 LENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKG 206 (292)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHH
T ss_pred HHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHH
Confidence 9996 9999999999987653100 01 357888999999999999999999999876433221 2567777
Q ss_pred HHHHHcCCHHHHHHHHHHHHH
Q 047934 286 DGLCRERGVEKAQSVIATLKE 306 (344)
Q Consensus 286 ~a~~~~G~~e~a~~l~~~M~~ 306 (344)
.++...|+.++|...++...+
T Consensus 207 ~~~~~~g~~~~A~~~~~~al~ 227 (292)
T 1qqe_A 207 LCQLAATDAVAAARTLQEGQS 227 (292)
T ss_dssp HHHHHTTCHHHHHHHHHGGGC
T ss_pred HHHHHcCCHHHHHHHHHHHHh
Confidence 788899999999999998765
No 81
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=97.86 E-value=0.00014 Score=60.90 Aligned_cols=150 Identities=11% Similarity=-0.009 Sum_probs=106.4
Q ss_pred CCCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHHcCCHHHHHH
Q 047934 153 ISEPPQEADEIFKKMKETG--LIPNAVAMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDG-FCKAQKFDDAKR 229 (344)
Q Consensus 153 ~sg~~~~A~~lf~~M~~~g--i~p~~~tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~a-y~k~g~~e~A~~ 229 (344)
..|++++|...|++..+.. ...-+..+-..|.+.|++++|...|+...+.. |+...+..+... +...+...+|..
T Consensus 18 ~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~~~~a~~ 95 (176)
T 2r5s_A 18 QQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQQAAESPELK 95 (176)
T ss_dssp HTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHhhcccchHHH
Confidence 4678999999999866532 11113357778889999999999998875542 344433322211 122223345778
Q ss_pred HHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 047934 230 IFRKMQSNGIAP-NAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSP-NVTTFVGLVDGLCRERGVEKAQSVIATLKE 306 (344)
Q Consensus 230 vf~~M~~~gi~p-d~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~p-d~~ty~~lL~a~~~~G~~e~a~~l~~~M~~ 306 (344)
.|++..+. .| +...|..+-.+|...|++++|...|++..+..-.+ +...+..+...+...|+.++|...+.....
T Consensus 96 ~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 96 RLEQELAA--NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHh--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 88887764 33 57888999999999999999999999988764322 356788889999999999999988886543
No 82
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=97.84 E-value=0.0026 Score=62.04 Aligned_cols=146 Identities=16% Similarity=0.145 Sum_probs=96.1
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHH
Q 047934 154 SEPPQEADEIFKKMKETGLIPNAVAMLDGLCK----DGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCK----AQKFD 225 (344)
Q Consensus 154 sg~~~~A~~lf~~M~~~gi~p~~~tli~~~~k----~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k----~g~~e 225 (344)
.+++++|.+.|++..+.|.......|-..|.. .+++++|++.|+...+.| +...+..|-.+|.. .++.+
T Consensus 92 ~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~ 168 (490)
T 2xm6_A 92 PQDYAQAVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYV 168 (490)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHH
Confidence 45778888888877776633222234444555 567788888887776664 55666666666666 66777
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHHHH
Q 047934 226 DAKRIFRKMQSNGIAPNAFSYNLLIQGLYK----CNKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCR----ERGVEKA 297 (344)
Q Consensus 226 ~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k----~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~----~G~~e~a 297 (344)
+|.+.|++..+.| +...+..|-..|.. .++.++|.+.|++..+.| +..++..+-..|.. .++.++|
T Consensus 169 ~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A 242 (490)
T 2xm6_A 169 MAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQS 242 (490)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 7777777777664 66677777777766 677777777777766654 45555555555554 5667777
Q ss_pred HHHHHHHHHCC
Q 047934 298 QSVIATLKEKG 308 (344)
Q Consensus 298 ~~l~~~M~~~G 308 (344)
.++++...+.|
T Consensus 243 ~~~~~~a~~~~ 253 (490)
T 2xm6_A 243 RVLFSQSAEQG 253 (490)
T ss_dssp HHHHHHHHTTT
T ss_pred HHHHHHHHHCC
Confidence 77766665554
No 83
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=97.84 E-value=0.0011 Score=60.20 Aligned_cols=156 Identities=8% Similarity=-0.060 Sum_probs=113.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCHH--------HHHHHHHHcCCHHHHHHHHHHHHHcCC---CCC--HHHHHHHHH
Q 047934 150 NEPISEPPQEADEIFKKMKETGLIPNAV--------AMLDGLCKDGLIQEAMKLFGLMREKGT---IPE--VVIYTAVVD 216 (344)
Q Consensus 150 ~~~~sg~~~~A~~lf~~M~~~gi~p~~~--------tli~~~~k~g~~~~A~~lf~~M~~~g~---~pd--~~tyn~LI~ 216 (344)
.+...|++++|.+.+.+..+..-..... .+...+...|++++|+..|+...+... .+. ..+|+.+-.
T Consensus 84 ~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~ 163 (293)
T 2qfc_A 84 MLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIAN 163 (293)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 3445788999999998877653321111 234456677899999999998775321 122 558899999
Q ss_pred HHHHcCCHHHHHHHHHHHHH---C-CCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHH
Q 047934 217 GFCKAQKFDDAKRIFRKMQS---N-GIAP--NAFSYNLLIQGLYKCNKLEEAVEYCIEMLEA----GHSP-NVTTFVGLV 285 (344)
Q Consensus 217 ay~k~g~~e~A~~vf~~M~~---~-gi~p--d~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~----gv~p-d~~ty~~lL 285 (344)
.|...|++++|...|++..+ . +-.+ ...+|..+-.+|.+.|++++|++.+++..+. +... -..+|..+-
T Consensus 164 ~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg 243 (293)
T 2qfc_A 164 IYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRG 243 (293)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 99999999999999998763 1 1111 1258889999999999999999999987643 2111 156788888
Q ss_pred HHHHHcCCHHHH-HHHHHHHH
Q 047934 286 DGLCRERGVEKA-QSVIATLK 305 (344)
Q Consensus 286 ~a~~~~G~~e~a-~~l~~~M~ 305 (344)
..|.+.|+.++| ...++...
T Consensus 244 ~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 244 ECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHcCCcHHHHHHHHHHHH
Confidence 889999999999 77676644
No 84
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=97.82 E-value=0.00063 Score=58.68 Aligned_cols=159 Identities=13% Similarity=0.018 Sum_probs=114.6
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCC----HHH----------------HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 047934 152 PISEPPQEADEIFKKMKETGLIPN----AVA----------------MLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIY 211 (344)
Q Consensus 152 ~~sg~~~~A~~lf~~M~~~gi~p~----~~t----------------li~~~~k~g~~~~A~~lf~~M~~~g~~pd~~ty 211 (344)
...|++++|+..|++..+.+ |+ +.. +-..|.+.|++++|...|+...+.. +-+...+
T Consensus 15 ~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~ 91 (208)
T 3urz_A 15 IEAGQNGQAVSYFRQTIALN--IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA-PNNVDCL 91 (208)
T ss_dssp HHTTCHHHHHHHHHHHHHHC--HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhC--CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHH
Confidence 34688999999999987643 22 123 6677889999999999999988763 3378899
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHcCCCCCHHHH--HHHHHH
Q 047934 212 TAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNK--LEEAVEYCIEMLEAGHSPNVTTF--VGLVDG 287 (344)
Q Consensus 212 n~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~--~~~A~~lf~~M~~~gv~pd~~ty--~~lL~a 287 (344)
..+-.+|...|++++|...|++..+.. +-+...|..+-.+|...|. .+.+...+.... .|+...+ ...-.+
T Consensus 92 ~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~a~~~~g~~ 166 (208)
T 3urz_A 92 EACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLS----SPTKMQYARYRDGLS 166 (208)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh----CCCchhHHHHHHHHH
Confidence 999999999999999999999998853 2257788888888766554 334555554432 4454433 333444
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCcccHHHHHHHH
Q 047934 288 LCRERGVEKAQSVIATLKEKGFLVNDKAVREFL 320 (344)
Q Consensus 288 ~~~~G~~e~a~~l~~~M~~~Gi~p~~~~~~~Ll 320 (344)
+...|++++|...|+...+ +.|+......+.
T Consensus 167 ~~~~~~~~~A~~~~~~al~--l~P~~~~~~~l~ 197 (208)
T 3urz_A 167 KLFTTRYEKARNSLQKVIL--RFPSTEAQKTLD 197 (208)
T ss_dssp HHHHHTHHHHHHHHHHHTT--TSCCHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHH--hCCCHHHHHHHH
Confidence 5568999999999998876 467766555444
No 85
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=97.78 E-value=0.00093 Score=57.93 Aligned_cols=142 Identities=13% Similarity=0.068 Sum_probs=116.4
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHH
Q 047934 159 EADEIFKKMKETGLIPNAVAMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQ----KFDDAKRIFRKM 234 (344)
Q Consensus 159 ~A~~lf~~M~~~gi~p~~~tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g----~~e~A~~vf~~M 234 (344)
+|++.|.+..+.|....+..|=..|...++.++|++.|+...+.| +...+..|=.+|.. + +.++|...|++.
T Consensus 4 eA~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A 79 (212)
T 3rjv_A 4 EPGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKA 79 (212)
T ss_dssp CTTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHH
Confidence 678889988888765444456677778999999999999998876 67778778777877 6 899999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHH----cCCHHHHHHHHHHHH
Q 047934 235 QSNGIAPNAFSYNLLIQGLYK----CNKLEEAVEYCIEMLEAGHS-PNVTTFVGLVDGLCR----ERGVEKAQSVIATLK 305 (344)
Q Consensus 235 ~~~gi~pd~~tyn~LI~ay~k----~g~~~~A~~lf~~M~~~gv~-pd~~ty~~lL~a~~~----~G~~e~a~~l~~~M~ 305 (344)
.+.| +...+..|-..|.. .++.++|++.|++..+.|.. -+...+..|-..|.. .++.++|.+.+....
T Consensus 80 ~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 80 VEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp HHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred HHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 8876 77888888888877 88999999999998877521 016777778788877 789999999999998
Q ss_pred HC
Q 047934 306 EK 307 (344)
Q Consensus 306 ~~ 307 (344)
+.
T Consensus 157 ~~ 158 (212)
T 3rjv_A 157 SL 158 (212)
T ss_dssp HT
T ss_pred Hc
Confidence 87
No 86
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.75 E-value=0.00035 Score=63.63 Aligned_cols=142 Identities=13% Similarity=-0.048 Sum_probs=108.7
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHHcCCHHHHHHH
Q 047934 156 PPQEADEIFKKMKETGLIPNAVAMLDGLCKDGLIQEAMKLFGLMREK----GTIPE-VVIYTAVVDGFCKAQKFDDAKRI 230 (344)
Q Consensus 156 ~~~~A~~lf~~M~~~gi~p~~~tli~~~~k~g~~~~A~~lf~~M~~~----g~~pd-~~tyn~LI~ay~k~g~~e~A~~v 230 (344)
++++|...|++. ...|...|++++|.+.|....+. |-.++ ..+|+.+-.+|.+.|++++|...
T Consensus 32 ~~~~A~~~~~~a------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~ 99 (292)
T 1qqe_A 32 KFEEAADLCVQA------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDS 99 (292)
T ss_dssp HHHHHHHHHHHH------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cHHHHHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 378888888776 34678899999999999876543 32222 57899999999999999999999
Q ss_pred HHHHHHCCCC-CC----HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHHcCCHHHHHH
Q 047934 231 FRKMQSNGIA-PN----AFSYNLLIQGLYKC-NKLEEAVEYCIEMLEAGH-SPN----VTTFVGLVDGLCRERGVEKAQS 299 (344)
Q Consensus 231 f~~M~~~gi~-pd----~~tyn~LI~ay~k~-g~~~~A~~lf~~M~~~gv-~pd----~~ty~~lL~a~~~~G~~e~a~~ 299 (344)
|++..+.... .+ ..+|+.+-..|... |++++|++.|++..+..- ..+ ..++..+-..+...|++++|.+
T Consensus 100 ~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 179 (292)
T 1qqe_A 100 LENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASD 179 (292)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 9887553100 02 45788899999996 999999999998765311 001 3567888899999999999999
Q ss_pred HHHHHHHCCC
Q 047934 300 VIATLKEKGF 309 (344)
Q Consensus 300 l~~~M~~~Gi 309 (344)
.++...+...
T Consensus 180 ~~~~al~~~~ 189 (292)
T 1qqe_A 180 IYSKLIKSSM 189 (292)
T ss_dssp HHHHHHHTTS
T ss_pred HHHHHHHHHh
Confidence 9999988643
No 87
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=97.74 E-value=0.00036 Score=57.15 Aligned_cols=135 Identities=8% Similarity=-0.095 Sum_probs=96.0
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 047934 152 PISEPPQEADEIFKKMKETGLIPN----AVAMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDA 227 (344)
Q Consensus 152 ~~sg~~~~A~~lf~~M~~~gi~p~----~~tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A 227 (344)
...|++++|+..+...... .|+ +..+-..|.+.|++++|.+.|+...+.. +-+..+|..+-.+|.+.|++++|
T Consensus 8 ~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A 84 (150)
T 4ga2_A 8 RSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKA 84 (150)
T ss_dssp CCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHH
Confidence 3456788888888775542 221 2356778889999999999999887753 23678888899999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH-HHHHHHcCCCC-CHHHHHHHHHHHHHcC
Q 047934 228 KRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEY-CIEMLEAGHSP-NVTTFVGLVDGLCRER 292 (344)
Q Consensus 228 ~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~l-f~~M~~~gv~p-d~~ty~~lL~a~~~~G 292 (344)
...|+...+.. +-+...|..+-..|.+.|+.++|.+. +++..+. .| +...|...-..+...|
T Consensus 85 ~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l--~P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 85 VECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL--FPGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH--STTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhC
Confidence 99998887752 12577888888888899988776655 4665553 34 4555655555554444
No 88
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=97.74 E-value=0.00063 Score=63.89 Aligned_cols=177 Identities=11% Similarity=-0.008 Sum_probs=128.1
Q ss_pred CCCCCHHHHHHHHHHHHHCC-CCCCH-------HHHHHHHHHcCCHHHHHHHHHHHHHc--CCC----CCHHHHHHHHHH
Q 047934 152 PISEPPQEADEIFKKMKETG-LIPNA-------VAMLDGLCKDGLIQEAMKLFGLMREK--GTI----PEVVIYTAVVDG 217 (344)
Q Consensus 152 ~~sg~~~~A~~lf~~M~~~g-i~p~~-------~tli~~~~k~g~~~~A~~lf~~M~~~--g~~----pd~~tyn~LI~a 217 (344)
...|++++|.+.|++..+.- -.++. ..+-..|...|+.++|+..+....+. ... ....+++.+-..
T Consensus 114 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~ 193 (383)
T 3ulq_A 114 LDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATN 193 (383)
T ss_dssp HHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHH
Confidence 44789999999999987631 11221 24677888899999999999877643 111 124678888899
Q ss_pred HHHcCCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CC-CCCHHHHHHHHHH
Q 047934 218 FCKAQKFDDAKRIFRKMQSN----GIA-PNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEA----GH-SPNVTTFVGLVDG 287 (344)
Q Consensus 218 y~k~g~~e~A~~vf~~M~~~----gi~-pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~----gv-~pd~~ty~~lL~a 287 (344)
|...|++++|...|++..+. +-. ....+|..+-.+|...|++++|.+.|++..+. +. .-...++..+-..
T Consensus 194 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~ 273 (383)
T 3ulq_A 194 FLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQI 273 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHH
Confidence 99999999999999887643 111 11247888999999999999999999988762 33 3346678888999
Q ss_pred HHHcCCHHHHHHHHHHHHHC----CCcccHHHHHHHHhccCCCCh
Q 047934 288 LCRERGVEKAQSVIATLKEK----GFLVNDKAVREFLDKKAPFSS 328 (344)
Q Consensus 288 ~~~~G~~e~a~~l~~~M~~~----Gi~p~~~~~~~Ll~~yak~g~ 328 (344)
|.+.|+.++|.+.++...+. +-......+..+-..|...|.
T Consensus 274 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~ 318 (383)
T 3ulq_A 274 HYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPD 318 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCC
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCc
Confidence 99999999999999987653 222223334556666666664
No 89
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=97.73 E-value=0.00012 Score=68.77 Aligned_cols=179 Identities=12% Similarity=-0.009 Sum_probs=121.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCC-CC-----HHHHHHHHHHcCCHHHHHHHHHHHHHc----C-CCCCHHHHHHHHHHH
Q 047934 150 NEPISEPPQEADEIFKKMKETGLI-PN-----AVAMLDGLCKDGLIQEAMKLFGLMREK----G-TIPEVVIYTAVVDGF 218 (344)
Q Consensus 150 ~~~~sg~~~~A~~lf~~M~~~gi~-p~-----~~tli~~~~k~g~~~~A~~lf~~M~~~----g-~~pd~~tyn~LI~ay 218 (344)
.++..|++++|+++|++..+.+-. +. +..+-..|...|++++|.+.|++..+. + ......++..+-..|
T Consensus 57 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~ 136 (411)
T 4a1s_A 57 RLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTL 136 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHH
Confidence 445578899999999998876432 11 124667778889999999999877543 1 122456778888889
Q ss_pred HHcCCHHHHHHHHHHHHHC----C-CCCCHHHHHHHHHHHHHcCC-----------------HHHHHHHHHHHHHc----
Q 047934 219 CKAQKFDDAKRIFRKMQSN----G-IAPNAFSYNLLIQGLYKCNK-----------------LEEAVEYCIEMLEA---- 272 (344)
Q Consensus 219 ~k~g~~e~A~~vf~~M~~~----g-i~pd~~tyn~LI~ay~k~g~-----------------~~~A~~lf~~M~~~---- 272 (344)
...|++++|...|++..+. + ......+|..+-..|...|+ +++|++.+++..+.
T Consensus 137 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~ 216 (411)
T 4a1s_A 137 KVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDL 216 (411)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999998887543 1 11124577888888888899 88888888876542
Q ss_pred CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC----Cc-ccHHHHHHHHhccCCCCh
Q 047934 273 GHSP-NVTTFVGLVDGLCRERGVEKAQSVIATLKEKG----FL-VNDKAVREFLDKKAPFSS 328 (344)
Q Consensus 273 gv~p-d~~ty~~lL~a~~~~G~~e~a~~l~~~M~~~G----i~-p~~~~~~~Ll~~yak~g~ 328 (344)
+-.+ ...++..+-..|...|++++|.+.+++..+.. -. ....++..+-..|...|.
T Consensus 217 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 278 (411)
T 4a1s_A 217 GDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQ 278 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTC
T ss_pred CCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcC
Confidence 1111 23466777778888899999988888776531 11 112245555555655554
No 90
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=97.70 E-value=0.0012 Score=51.06 Aligned_cols=92 Identities=13% Similarity=0.100 Sum_probs=56.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 047934 179 MLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNK 258 (344)
Q Consensus 179 li~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~ 258 (344)
+-..+...|++++|.++|+...+.. +.+..++..+-..|...|++++|...|++..+.. ..+...|..+-.+|.+.|+
T Consensus 22 ~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~ 99 (133)
T 2lni_A 22 KGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAALEAMKD 99 (133)
T ss_dssp HHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHHhh
Confidence 4555566666677776666665432 2255666666666666666666666666665532 1245566666666666666
Q ss_pred HHHHHHHHHHHHHc
Q 047934 259 LEEAVEYCIEMLEA 272 (344)
Q Consensus 259 ~~~A~~lf~~M~~~ 272 (344)
+++|.+.|++..+.
T Consensus 100 ~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 100 YTKAMDVYQKALDL 113 (133)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 66666666665543
No 91
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=97.69 E-value=0.0013 Score=61.83 Aligned_cols=177 Identities=10% Similarity=-0.018 Sum_probs=128.5
Q ss_pred CCCCCHHHHHHHHHHHHHCC-CCCCH-------HHHHHHHHHcCCHHHHHHHHHHHHHc--CC---CC-CHHHHHHHHHH
Q 047934 152 PISEPPQEADEIFKKMKETG-LIPNA-------VAMLDGLCKDGLIQEAMKLFGLMREK--GT---IP-EVVIYTAVVDG 217 (344)
Q Consensus 152 ~~sg~~~~A~~lf~~M~~~g-i~p~~-------~tli~~~~k~g~~~~A~~lf~~M~~~--g~---~p-d~~tyn~LI~a 217 (344)
+..|++++|+..|++..+.- -.++. ..+-..|...|++++|...+....+. .. .+ ...+++.+-.+
T Consensus 112 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~ 191 (378)
T 3q15_A 112 FDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGN 191 (378)
T ss_dssp HHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHH
T ss_pred HHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHH
Confidence 34789999999999887531 11222 13677888999999999999876643 11 11 25678889999
Q ss_pred HHHcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCCHHHHHHHHHHH
Q 047934 218 FCKAQKFDDAKRIFRKMQSN----GIAP-NAFSYNLLIQGLYKCNKLEEAVEYCIEMLEA----GHSPNVTTFVGLVDGL 288 (344)
Q Consensus 218 y~k~g~~e~A~~vf~~M~~~----gi~p-d~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~----gv~pd~~ty~~lL~a~ 288 (344)
|...|++++|...|++..+. +-.+ ...++..|-.+|...|++++|.+.|++.... +......++..+-..|
T Consensus 192 y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 271 (378)
T 3q15_A 192 YDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTL 271 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHH
Confidence 99999999999999887652 2111 2357788889999999999999999988761 2222367788888999
Q ss_pred HHcCCHHHHHHHHHHHHHCC----CcccHHHHHHHHhccCCCCh
Q 047934 289 CRERGVEKAQSVIATLKEKG----FLVNDKAVREFLDKKAPFSS 328 (344)
Q Consensus 289 ~~~G~~e~a~~l~~~M~~~G----i~p~~~~~~~Ll~~yak~g~ 328 (344)
.+.|+.++|.+.++...+.. -......+..+-..|...+.
T Consensus 272 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~ 315 (378)
T 3q15_A 272 CKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVD 315 (378)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCC
T ss_pred HHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCc
Confidence 99999999999999887642 22234455555566666554
No 92
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=97.68 E-value=0.0011 Score=51.17 Aligned_cols=101 Identities=11% Similarity=0.085 Sum_probs=87.1
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 047934 205 IPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTFVGL 284 (344)
Q Consensus 205 ~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty~~l 284 (344)
..+...+..+-..|...|++++|...|++..+.. ..+...|..+..+|...|++++|++.|++..+.. ..+...+..+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l 90 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRK 90 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHH
Confidence 3467788889999999999999999999988753 2368889999999999999999999999988753 2367888889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHC
Q 047934 285 VDGLCRERGVEKAQSVIATLKEK 307 (344)
Q Consensus 285 L~a~~~~G~~e~a~~l~~~M~~~ 307 (344)
...|...|++++|.+.++...+.
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHh
Confidence 99999999999999999998765
No 93
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=97.68 E-value=0.0019 Score=60.40 Aligned_cols=127 Identities=15% Similarity=-0.001 Sum_probs=104.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 047934 178 AMLDGLCKDGLIQEAMKLFGLMREKGTIPE--------------VVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNA 243 (344)
Q Consensus 178 tli~~~~k~g~~~~A~~lf~~M~~~g~~pd--------------~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~ 243 (344)
.+-..|.+.|++++|...|+...+..-... ..+|..+-.+|.+.|++++|...|++..+.. .-+.
T Consensus 152 ~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~ 230 (336)
T 1p5q_A 152 ERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD-SNNE 230 (336)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcH
Confidence 466778899999999999998887642221 5899999999999999999999999998863 2368
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH-HHHHHHHHH
Q 047934 244 FSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRERGVEKA-QSVIATLKE 306 (344)
Q Consensus 244 ~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~~e~a-~~l~~~M~~ 306 (344)
..|..+-.+|...|++++|+..|++..+.. .-+...+..+-..+...|+.+++ ..++..|..
T Consensus 231 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 231 KGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999988753 22577888888889999999988 556666654
No 94
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=97.67 E-value=0.00032 Score=72.27 Aligned_cols=168 Identities=9% Similarity=-0.005 Sum_probs=129.6
Q ss_pred CCCCCHHHHHHHHHHHHH------CCCCCC----HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 047934 152 PISEPPQEADEIFKKMKE------TGLIPN----AVAMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKA 221 (344)
Q Consensus 152 ~~sg~~~~A~~lf~~M~~------~gi~p~----~~tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~ 221 (344)
...|++++|++.|++..+ ....|+ +..+-..|.+.|++++|++.|+...+.. +-+...|..+-.+|...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 457899999999999871 112232 2346678889999999999999988753 23778899999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 047934 222 QKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRERGVEKAQSVI 301 (344)
Q Consensus 222 g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~~e~a~~l~ 301 (344)
|++++|...|++..+..- -+...|..+-.+|.+.|++++ ++.|++..+.. .-+...|..+-.++.+.|++++|.+.+
T Consensus 481 g~~~~A~~~~~~al~l~P-~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTFP-GELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp TCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999887531 256788899999999999999 99999988753 225778888999999999999999999
Q ss_pred HHHHHCCCccc-HHHHHHHHhccCC
Q 047934 302 ATLKEKGFLVN-DKAVREFLDKKAP 325 (344)
Q Consensus 302 ~~M~~~Gi~p~-~~~~~~Ll~~yak 325 (344)
+...+. .|+ ...+..+-..|..
T Consensus 558 ~~al~l--~P~~~~a~~~~~~~~~~ 580 (681)
T 2pzi_A 558 DEVPPT--SRHFTTARLTSAVTLLS 580 (681)
T ss_dssp HTSCTT--STTHHHHHHHHHHHTC-
T ss_pred Hhhccc--CcccHHHHHHHHHHHHc
Confidence 887654 344 3444444444443
No 95
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=97.66 E-value=0.0011 Score=56.40 Aligned_cols=117 Identities=13% Similarity=-0.043 Sum_probs=96.1
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 047934 152 PISEPPQEADEIFKKMKETGLIPNA---VAMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAK 228 (344)
Q Consensus 152 ~~sg~~~~A~~lf~~M~~~gi~p~~---~tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~ 228 (344)
+..|++++|.+.|++.. .|+. ..+-..|.+.|++++|++.|+...+.. +.+..+|..+-.+|...|++++|.
T Consensus 17 ~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~ 91 (213)
T 1hh8_A 17 ADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDLAI 91 (213)
T ss_dssp HHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccHHHHH
Confidence 34688999999999874 3333 347778889999999999999988764 347889999999999999999999
Q ss_pred HHHHHHHHCCCC--------------C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 047934 229 RIFRKMQSNGIA--------------P-NAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAG 273 (344)
Q Consensus 229 ~vf~~M~~~gi~--------------p-d~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~g 273 (344)
..|+...+..-. | ....|..+-.+|.+.|++++|.+.|++..+..
T Consensus 92 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 92 KDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 999999885311 1 23688899999999999999999999988753
No 96
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=97.65 E-value=0.00078 Score=61.34 Aligned_cols=147 Identities=10% Similarity=-0.007 Sum_probs=74.5
Q ss_pred CCCHHHHHHHHHHHHHCCCC-CC-HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHHHcCCHHHHHHH
Q 047934 154 SEPPQEADEIFKKMKETGLI-PN-AVAMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVV-DGFCKAQKFDDAKRI 230 (344)
Q Consensus 154 sg~~~~A~~lf~~M~~~gi~-p~-~~tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI-~ay~k~g~~e~A~~v 230 (344)
.|++++|..+|++..+..-. +. +..+-..|.+.|++++|..+++..... .|+........ ..+...+..++|...
T Consensus 130 ~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~~~l~~~~~~~~a~~~ 207 (287)
T 3qou_A 130 ESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQIELLXQAADTPEIQQ 207 (287)
T ss_dssp TTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHHHHHHhhcccCccHHH
Confidence 45566666666665543211 00 123455555666666666666555433 23332222211 124444555555555
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 047934 231 FRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHS-PNVTTFVGLVDGLCRERGVEKAQSVIAT 303 (344)
Q Consensus 231 f~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~-pd~~ty~~lL~a~~~~G~~e~a~~l~~~ 303 (344)
|++..+.. .-+...+..+-..|...|++++|+..|.+.....-. .+...+..+...+...|+.++|...+..
T Consensus 208 l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~ 280 (287)
T 3qou_A 208 LQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRR 280 (287)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 55555432 124555666666666666666666666666554211 1244555666666666666655555544
No 97
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=97.65 E-value=0.00069 Score=56.18 Aligned_cols=121 Identities=7% Similarity=0.077 Sum_probs=90.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCC-C-CHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHHcCCH--
Q 047934 150 NEPISEPPQEADEIFKKMKETGLI-P-NAVAMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDG-FCKAQKF-- 224 (344)
Q Consensus 150 ~~~~sg~~~~A~~lf~~M~~~gi~-p-~~~tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~a-y~k~g~~-- 224 (344)
.+...|++++|...|++..+..-. + .+..+-..|...|++++|...|+...+.. +.+...+..+-.+ |...|++
T Consensus 19 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 19 QFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp CCC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcch
Confidence 455678999999999987765421 1 13356778888999999999999887653 2367777777777 7788998
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 047934 225 DDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEA 272 (344)
Q Consensus 225 e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~ 272 (344)
++|...|+...+.. .-+...|..+...|...|++++|...|++..+.
T Consensus 98 ~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 98 AQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 99999999988753 225778888888999999999999999998875
No 98
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.64 E-value=0.0024 Score=50.06 Aligned_cols=97 Identities=13% Similarity=0.096 Sum_probs=46.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 047934 207 EVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVD 286 (344)
Q Consensus 207 d~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~ 286 (344)
+...|..+-..|.+.|++++|...|+...... .-+...|..+-.+|...|++++|...|++..... .-+...+..+-.
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHH
Confidence 34444444455555555555555555444432 1134445555555555555555555555544432 113444444555
Q ss_pred HHHHcCCHHHHHHHHHHHH
Q 047934 287 GLCRERGVEKAQSVIATLK 305 (344)
Q Consensus 287 a~~~~G~~e~a~~l~~~M~ 305 (344)
+|...|++++|.+.+....
T Consensus 86 ~~~~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAY 104 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHH
Confidence 5555555555555555443
No 99
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=97.63 E-value=0.0016 Score=49.82 Aligned_cols=114 Identities=13% Similarity=0.037 Sum_probs=90.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 047934 207 EVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVD 286 (344)
Q Consensus 207 d~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~ 286 (344)
+...+..+-..+...|++++|...|++..... ..+...|..+..+|...|++++|.+.+++..... ..+...+..+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHH
Confidence 45677888889999999999999999987753 2367889999999999999999999999988753 235778888889
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCcccHHHHHHHHhcc
Q 047934 287 GLCRERGVEKAQSVIATLKEKGFLVNDKAVREFLDKK 323 (344)
Q Consensus 287 a~~~~G~~e~a~~l~~~M~~~Gi~p~~~~~~~Ll~~y 323 (344)
.|...|++++|.+.++...+..-. +...+..+-..+
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~ 124 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELDPD-NETYKSNLKIAE 124 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHhcCcc-chHHHHHHHHHH
Confidence 999999999999999998875321 334444444333
No 100
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.61 E-value=0.0016 Score=49.85 Aligned_cols=94 Identities=14% Similarity=0.216 Sum_probs=61.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC--CCC----HHHHHHHHH
Q 047934 178 AMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGI--APN----AFSYNLLIQ 251 (344)
Q Consensus 178 tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi--~pd----~~tyn~LI~ 251 (344)
.+-..+...|++++|..+|+...+.. +.+..++..+-..|...|++++|...|+....... .++ ..+|..+..
T Consensus 9 ~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~ 87 (131)
T 1elr_A 9 ELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGN 87 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHH
Confidence 34556667777777777777766543 33566667777777777777777777776655321 112 556666677
Q ss_pred HHHHcCCHHHHHHHHHHHHHc
Q 047934 252 GLYKCNKLEEAVEYCIEMLEA 272 (344)
Q Consensus 252 ay~k~g~~~~A~~lf~~M~~~ 272 (344)
+|.+.|++++|.+.|++..+.
T Consensus 88 ~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 88 SYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHh
Confidence 777777777777777776664
No 101
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=97.61 E-value=0.00091 Score=55.40 Aligned_cols=122 Identities=9% Similarity=0.071 Sum_probs=97.5
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHHcCCH--H
Q 047934 184 CKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQG-LYKCNKL--E 260 (344)
Q Consensus 184 ~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~a-y~k~g~~--~ 260 (344)
...|++++|...|+...+.. +.+..+|..+-.+|...|++++|...|++..+.. ..+...|..+..+ |...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchH
Confidence 45678888999998877653 3477899999999999999999999999987753 2267788888888 7789998 9
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 047934 261 EAVEYCIEMLEAGHSPNVTTFVGLVDGLCRERGVEKAQSVIATLKEKG 308 (344)
Q Consensus 261 ~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~~e~a~~l~~~M~~~G 308 (344)
+|...|++..... .-+...+..+...|...|++++|...+....+..
T Consensus 99 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 99 QTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 9999999988763 2256778888889999999999999999988763
No 102
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.59 E-value=0.0028 Score=48.43 Aligned_cols=109 Identities=11% Similarity=0.166 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCC----HHHH
Q 047934 208 VVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAG--HSPN----VTTF 281 (344)
Q Consensus 208 ~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~g--v~pd----~~ty 281 (344)
...|..+-..|...|++++|...|+...... ..+...|..+..+|...|++++|...+++..... ..++ ..++
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 4567778888999999999999999988753 3367889999999999999999999999987652 1223 6778
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCcccHHHHHHH
Q 047934 282 VGLVDGLCRERGVEKAQSVIATLKEKGFLVNDKAVREF 319 (344)
Q Consensus 282 ~~lL~a~~~~G~~e~a~~l~~~M~~~Gi~p~~~~~~~L 319 (344)
..+...+...|++++|.+.+....+.. |+......+
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l 118 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAEH--RTPDVLKKC 118 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhC--CCHHHHHHH
Confidence 888899999999999999999988753 444444433
No 103
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.58 E-value=0.0057 Score=48.05 Aligned_cols=90 Identities=17% Similarity=0.056 Sum_probs=46.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 047934 179 MLDGLCKDGLIQEAMKLFGLMREKGTIPE----VVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLY 254 (344)
Q Consensus 179 li~~~~k~g~~~~A~~lf~~M~~~g~~pd----~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~ 254 (344)
+-..+...|++++|.++|+...+. .|+ ..+|..+-..|...|++++|...|+...+.. ..+...|..+-.+|.
T Consensus 34 ~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 110 (148)
T 2dba_A 34 EGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALYRRSQALE 110 (148)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHHHHHHHHH
Confidence 444455556666666666555443 233 3445555555555555555555555554431 113444555555555
Q ss_pred HcCCHHHHHHHHHHHHH
Q 047934 255 KCNKLEEAVEYCIEMLE 271 (344)
Q Consensus 255 k~g~~~~A~~lf~~M~~ 271 (344)
..|++++|.+.|++..+
T Consensus 111 ~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 111 KLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 55555555555555444
No 104
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=97.58 E-value=0.0016 Score=62.48 Aligned_cols=128 Identities=10% Similarity=0.002 Sum_probs=109.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 047934 179 MLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQK-FDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCN 257 (344)
Q Consensus 179 li~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~-~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g 257 (344)
+-..+.+.|++++|++.|+...+.. +-+..+|+.+-.+|...|+ +++|+..|++..+..-. +...|..+-.+|.+.|
T Consensus 103 lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~~~~~~g 180 (382)
T 2h6f_A 103 FRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVLVEWLR 180 (382)
T ss_dssp HHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcc
Confidence 4556778899999999999988753 3368899999999999997 99999999999886422 6789999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 047934 258 KLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRERGVEKAQSVIATLKEKGF 309 (344)
Q Consensus 258 ~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~~e~a~~l~~~M~~~Gi 309 (344)
++++|+..|++..+.. .-+...|..+-.++...|++++|.+.++.+.+..-
T Consensus 181 ~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P 231 (382)
T 2h6f_A 181 DPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV 231 (382)
T ss_dssp CCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Confidence 9999999999998863 23688899999999999999999999999987643
No 105
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=97.58 E-value=0.0024 Score=47.87 Aligned_cols=95 Identities=12% Similarity=-0.006 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 047934 210 IYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLC 289 (344)
Q Consensus 210 tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~ 289 (344)
.+..+...+...|++++|...|+...... ..+...|..+..+|...|++++|...+++..... ..+...+..+..++.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 34444444445555555555555444321 1134444445555555555555555555544431 113444444445555
Q ss_pred HcCCHHHHHHHHHHHHH
Q 047934 290 RERGVEKAQSVIATLKE 306 (344)
Q Consensus 290 ~~G~~e~a~~l~~~M~~ 306 (344)
..|++++|.+.+....+
T Consensus 84 ~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HTTCHHHHHHHHHHHHT
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 55555555555554443
No 106
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=97.57 E-value=0.00069 Score=60.57 Aligned_cols=155 Identities=14% Similarity=-0.021 Sum_probs=110.0
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHcCCHHHHHHHHHHHHHc----CCC-CCHHHHHHHHHHH
Q 047934 151 EPISEPPQEADEIFKKMKETGLIPNA-------VAMLDGLCKDGLIQEAMKLFGLMREK----GTI-PEVVIYTAVVDGF 218 (344)
Q Consensus 151 ~~~sg~~~~A~~lf~~M~~~gi~p~~-------~tli~~~~k~g~~~~A~~lf~~M~~~----g~~-pd~~tyn~LI~ay 218 (344)
++..|++++|..+|++..+..-. +. ..+-..|...|++++|.++|+...+. +.. ....++..+-..|
T Consensus 15 ~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~ 93 (338)
T 3ro2_A 15 LCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTL 93 (338)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHH
Confidence 34578899999999998876422 21 14677788899999999999876432 211 1356778888889
Q ss_pred HHcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHHHc-
Q 047934 219 CKAQKFDDAKRIFRKMQSNGI-APN----AFSYNLLIQGLYKCNK--------------------LEEAVEYCIEMLEA- 272 (344)
Q Consensus 219 ~k~g~~e~A~~vf~~M~~~gi-~pd----~~tyn~LI~ay~k~g~--------------------~~~A~~lf~~M~~~- 272 (344)
...|++++|...|++..+..- ..+ ..+|..+-..|...|+ +++|.+.+++....
T Consensus 94 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~ 173 (338)
T 3ro2_A 94 KVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLV 173 (338)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999888654210 112 3477888888888888 88888888876532
Q ss_pred ---CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 047934 273 ---GHSP-NVTTFVGLVDGLCRERGVEKAQSVIATLKE 306 (344)
Q Consensus 273 ---gv~p-d~~ty~~lL~a~~~~G~~e~a~~l~~~M~~ 306 (344)
+-.+ ...++..+...|...|++++|.+.++...+
T Consensus 174 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 211 (338)
T 3ro2_A 174 TALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLL 211 (338)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 1111 134566777778888999999888887664
No 107
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=97.56 E-value=0.00022 Score=63.82 Aligned_cols=151 Identities=14% Similarity=0.068 Sum_probs=110.4
Q ss_pred HHHHHHHHHHHHHC----CCCCC----HHHHHHHHHHcCCHHHHHHHHHHHHHc----CC-CCCHHHHHHHHHHHHHcCC
Q 047934 157 PQEADEIFKKMKET----GLIPN----AVAMLDGLCKDGLIQEAMKLFGLMREK----GT-IPEVVIYTAVVDGFCKAQK 223 (344)
Q Consensus 157 ~~~A~~lf~~M~~~----gi~p~----~~tli~~~~k~g~~~~A~~lf~~M~~~----g~-~pd~~tyn~LI~ay~k~g~ 223 (344)
+++|.+.+++..+. +..+. +..+-..|...|++++|.++|+...+. +. .....++..+...|...|+
T Consensus 159 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 238 (338)
T 3ro2_A 159 LQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGE 238 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCC
Confidence 77888888765432 21111 224677788899999999999987643 11 1123478889999999999
Q ss_pred HHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCC-CCHHHHHHHHHHHHHcCC
Q 047934 224 FDDAKRIFRKMQSNGI-APN----AFSYNLLIQGLYKCNKLEEAVEYCIEMLEA----GHS-PNVTTFVGLVDGLCRERG 293 (344)
Q Consensus 224 ~e~A~~vf~~M~~~gi-~pd----~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~----gv~-pd~~ty~~lL~a~~~~G~ 293 (344)
+++|...+++..+... ..+ ..++..+...|...|++++|.+.+++.... +-. ....++..+...|...|+
T Consensus 239 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 318 (338)
T 3ro2_A 239 FETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGN 318 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC
Confidence 9999999988764210 012 567888999999999999999999987653 111 124467788888999999
Q ss_pred HHHHHHHHHHHHHC
Q 047934 294 VEKAQSVIATLKEK 307 (344)
Q Consensus 294 ~e~a~~l~~~M~~~ 307 (344)
+++|.+.+++..+.
T Consensus 319 ~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 319 HDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHH
Confidence 99999999988764
No 108
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=97.54 E-value=0.0021 Score=50.96 Aligned_cols=90 Identities=13% Similarity=0.097 Sum_probs=56.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 047934 181 DGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLE 260 (344)
Q Consensus 181 ~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~ 260 (344)
..|.+.|++++|++.|++..+.. +-+..+|..+-.+|.+.|++++|...|++..+.. .-+...|..+-.+|...|+++
T Consensus 21 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~ 98 (126)
T 4gco_A 21 NEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLVAMREWS 98 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHCCCHH
Confidence 34566677777777776665542 2356666666666667777777777766665532 124556666666666667777
Q ss_pred HHHHHHHHHHHc
Q 047934 261 EAVEYCIEMLEA 272 (344)
Q Consensus 261 ~A~~lf~~M~~~ 272 (344)
+|++.|++..+.
T Consensus 99 ~A~~~~~~al~l 110 (126)
T 4gco_A 99 KAQRAYEDALQV 110 (126)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 776666666553
No 109
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.53 E-value=0.00095 Score=52.91 Aligned_cols=129 Identities=12% Similarity=0.065 Sum_probs=94.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCC-CHHHHH
Q 047934 178 AMLDGLCKDGLIQEAMKLFGLMREKGT-IPE----VVIYTAVVDGFCKAQKFDDAKRIFRKMQSN----GIAP-NAFSYN 247 (344)
Q Consensus 178 tli~~~~k~g~~~~A~~lf~~M~~~g~-~pd----~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~----gi~p-d~~tyn 247 (344)
.+-..|...|++++|+..|++..+..- ..+ ..++..+-..|...|++++|...+++..+. +-.+ ....+.
T Consensus 14 ~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 93 (164)
T 3ro3_A 14 NLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCY 93 (164)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHH
Confidence 456677788999999999987654311 012 247788888999999999999999887552 1111 145677
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 047934 248 LLIQGLYKCNKLEEAVEYCIEMLEA----GHSP-NVTTFVGLVDGLCRERGVEKAQSVIATLKE 306 (344)
Q Consensus 248 ~LI~ay~k~g~~~~A~~lf~~M~~~----gv~p-d~~ty~~lL~a~~~~G~~e~a~~l~~~M~~ 306 (344)
.+-..|...|++++|.+.+++.... +..+ ...++..+-..|...|+.++|.+.+++..+
T Consensus 94 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 94 SLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 8888899999999999999887643 2111 134567778888899999999999988664
No 110
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=97.53 E-value=0.0003 Score=65.37 Aligned_cols=151 Identities=13% Similarity=0.048 Sum_probs=110.5
Q ss_pred HHHHHHHHHHHHHC----CCCCC----HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCC----HHHHHHHHHHHHHcCC
Q 047934 157 PQEADEIFKKMKET----GLIPN----AVAMLDGLCKDGLIQEAMKLFGLMREKG-TIPE----VVIYTAVVDGFCKAQK 223 (344)
Q Consensus 157 ~~~A~~lf~~M~~~----gi~p~----~~tli~~~~k~g~~~~A~~lf~~M~~~g-~~pd----~~tyn~LI~ay~k~g~ 223 (344)
+++|.+.+++..+. +..+. +..+-..|...|++++|.+.|++..+.. -.++ ..++..+-..|...|+
T Consensus 163 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 242 (406)
T 3sf4_A 163 LQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGE 242 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC
Confidence 77888888765432 21111 2246778888999999999999876431 0122 3478889999999999
Q ss_pred HHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHHcCC
Q 047934 224 FDDAKRIFRKMQSN----GIAP-NAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGH-SPN----VTTFVGLVDGLCRERG 293 (344)
Q Consensus 224 ~e~A~~vf~~M~~~----gi~p-d~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv-~pd----~~ty~~lL~a~~~~G~ 293 (344)
+++|...+++..+. +..+ ...+|..+-..|.+.|++++|.+.+++.....- ..+ ..++..+-..|...|+
T Consensus 243 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 322 (406)
T 3sf4_A 243 FETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGN 322 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC
Confidence 99999999987642 1111 156788999999999999999999998765311 112 5567788888999999
Q ss_pred HHHHHHHHHHHHHC
Q 047934 294 VEKAQSVIATLKEK 307 (344)
Q Consensus 294 ~e~a~~l~~~M~~~ 307 (344)
+++|.+.+....+.
T Consensus 323 ~~~A~~~~~~al~~ 336 (406)
T 3sf4_A 323 HDQAMHFAEKHLEI 336 (406)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999986643
No 111
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=97.52 E-value=0.0035 Score=49.72 Aligned_cols=97 Identities=16% Similarity=0.155 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 047934 209 VIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGL 288 (344)
Q Consensus 209 ~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~ 288 (344)
..+..+=..|.+.|++++|...|++..+.. +-+...|..+-.+|.+.|++++|++.|++..+.. .-+...|..+-.+|
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHH
Confidence 445556678899999999999999987753 3368899999999999999999999999988753 23578899999999
Q ss_pred HHcCCHHHHHHHHHHHHHC
Q 047934 289 CRERGVEKAQSVIATLKEK 307 (344)
Q Consensus 289 ~~~G~~e~a~~l~~~M~~~ 307 (344)
...|++++|.+.|+...+.
T Consensus 92 ~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHH
Confidence 9999999999999998874
No 112
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=97.52 E-value=0.00079 Score=63.20 Aligned_cols=150 Identities=10% Similarity=0.014 Sum_probs=86.6
Q ss_pred CCCHHHHHHHHHHHHHC----CCCC----CHHHHHHHHHHcCCHHHHHHHHHHHHHc----CC-CCCHHHHHHHHHHHHH
Q 047934 154 SEPPQEADEIFKKMKET----GLIP----NAVAMLDGLCKDGLIQEAMKLFGLMREK----GT-IPEVVIYTAVVDGFCK 220 (344)
Q Consensus 154 sg~~~~A~~lf~~M~~~----gi~p----~~~tli~~~~k~g~~~~A~~lf~~M~~~----g~-~pd~~tyn~LI~ay~k 220 (344)
.|++++|.+.|++..+. +..+ .+..+-..|...|++++|.+.|++..+. +. .....++..+-..|.+
T Consensus 197 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~ 276 (383)
T 3ulq_A 197 LKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYK 276 (383)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHH
Confidence 56677777777765532 1111 1123556666777777777777766541 22 3345667777777777
Q ss_pred cCCHHHHHHHHHHHHHC----CCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcC
Q 047934 221 AQKFDDAKRIFRKMQSN----GIAPNAFSYNLLIQGLYKCNK---LEEAVEYCIEMLEAGHSPN-VTTFVGLVDGLCRER 292 (344)
Q Consensus 221 ~g~~e~A~~vf~~M~~~----gi~pd~~tyn~LI~ay~k~g~---~~~A~~lf~~M~~~gv~pd-~~ty~~lL~a~~~~G 292 (344)
.|++++|...|++..+. +-......+..+-..|...|+ +++|+.++++. +..++ ...+..+-..|...|
T Consensus 277 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g 353 (383)
T 3ulq_A 277 LGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDVAKYYHERK 353 (383)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCC
Confidence 77777777777765442 111112234555556666666 55565555544 22222 334556666777777
Q ss_pred CHHHHHHHHHHHHH
Q 047934 293 GVEKAQSVIATLKE 306 (344)
Q Consensus 293 ~~e~a~~l~~~M~~ 306 (344)
+.++|.+.++...+
T Consensus 354 ~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 354 NFQKASAYFLKVEQ 367 (383)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 77777777776553
No 113
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=97.52 E-value=0.0018 Score=53.70 Aligned_cols=92 Identities=13% Similarity=0.059 Sum_probs=52.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 047934 179 MLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNK 258 (344)
Q Consensus 179 li~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~ 258 (344)
+-..+.+.|++++|...|+...+.. +-+...|..+-.+|...|++++|...|++..+..- -+...|..+-.+|.+.|+
T Consensus 42 lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P-~~~~~~~~lg~~~~~lg~ 119 (151)
T 3gyz_A 42 YAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGK-NDYTPVFHTGQCQLRLKA 119 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS-SCCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCC
Confidence 3445555666666666666655542 22455566666666666666666666666655321 134555566666666666
Q ss_pred HHHHHHHHHHHHHc
Q 047934 259 LEEAVEYCIEMLEA 272 (344)
Q Consensus 259 ~~~A~~lf~~M~~~ 272 (344)
+++|...|++..+.
T Consensus 120 ~~eA~~~~~~al~l 133 (151)
T 3gyz_A 120 PLKAKECFELVIQH 133 (151)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 66666666665553
No 114
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=97.50 E-value=0.0015 Score=59.92 Aligned_cols=152 Identities=11% Similarity=-0.042 Sum_probs=86.8
Q ss_pred CCCCHHHHHHHHHHHHHC----CCCC----CHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHH
Q 047934 153 ISEPPQEADEIFKKMKET----GLIP----NAVAMLDGLCKDGLIQEAMKLFGLMREK----GTIP-EVVIYTAVVDGFC 219 (344)
Q Consensus 153 ~sg~~~~A~~lf~~M~~~----gi~p----~~~tli~~~~k~g~~~~A~~lf~~M~~~----g~~p-d~~tyn~LI~ay~ 219 (344)
..|++++|.+.|.+..+. +-.. .+..+-..|.+.|++++|+..|+...+. |-.. -..+++.+-..|.
T Consensus 48 ~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~ 127 (307)
T 2ifu_A 48 NAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLME 127 (307)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred HcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 355666666666654432 1100 0112455566667777777777765432 1111 1345666666666
Q ss_pred HcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-----HHHHHHHHHHH
Q 047934 220 KAQKFDDAKRIFRKMQSN----GIAP-NAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNV-----TTFVGLVDGLC 289 (344)
Q Consensus 220 k~g~~e~A~~vf~~M~~~----gi~p-d~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~-----~ty~~lL~a~~ 289 (344)
. |++++|...|++..+. |-.. ...+|..+-..|.+.|++++|+..|++....-..-.. .++..+...+.
T Consensus 128 ~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~ 206 (307)
T 2ifu_A 128 P-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQL 206 (307)
T ss_dssp T-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred c-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHH
Confidence 6 7777777777766542 1000 1346666777777777777777777777665322221 24444555555
Q ss_pred HcCCHHHHHHHHHHHH
Q 047934 290 RERGVEKAQSVIATLK 305 (344)
Q Consensus 290 ~~G~~e~a~~l~~~M~ 305 (344)
..|++++|...++...
T Consensus 207 ~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 207 HRADYVAAQKCVRESY 222 (307)
T ss_dssp HTTCHHHHHHHHHHHT
T ss_pred HcCCHHHHHHHHHHHh
Confidence 6677777777777777
No 115
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=97.49 E-value=0.0017 Score=58.86 Aligned_cols=149 Identities=11% Similarity=0.038 Sum_probs=107.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC-CCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CC----HHHHHH
Q 047934 179 MLDGLCKDGLIQEAMKLFGLMREKG-TIPEV----VIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIA-PN----AFSYNL 248 (344)
Q Consensus 179 li~~~~k~g~~~~A~~lf~~M~~~g-~~pd~----~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~-pd----~~tyn~ 248 (344)
.+..+...|++++|.++++...+.. ..++. ..+..+...|...+++++|...|++..+.... .+ ..+|+.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 3677889999999999999987643 22332 23445667777788999999999999874222 23 347999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHc-----CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCccc-HHHHH
Q 047934 249 LIQGLYKCNKLEEAVEYCIEMLEA-----GHSPN-VTTFVGLVDGLCRERGVEKAQSVIATLKEK----GFLVN-DKAVR 317 (344)
Q Consensus 249 LI~ay~k~g~~~~A~~lf~~M~~~-----gv~pd-~~ty~~lL~a~~~~G~~e~a~~l~~~M~~~----Gi~p~-~~~~~ 317 (344)
+-..|...|++++|+..|++..+. +..+. ..+|..+-..|.+.|++++|.+.++...+. +.... ..++.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 999999999999999999998741 22222 236778888999999999999999877643 32222 44555
Q ss_pred HHHhccCCCC
Q 047934 318 EFLDKKAPFS 327 (344)
Q Consensus 318 ~Ll~~yak~g 327 (344)
.+=..|.+.|
T Consensus 241 ~lg~~~~~~g 250 (293)
T 3u3w_A 241 QRGECLRKLE 250 (293)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHhC
Confidence 5555555555
No 116
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.49 E-value=0.0027 Score=52.07 Aligned_cols=93 Identities=9% Similarity=0.020 Sum_probs=73.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 047934 178 AMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCN 257 (344)
Q Consensus 178 tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g 257 (344)
.+-..|.+.|++++|++.|+...+.. +-+...|..+-.+|.+.|++++|+..|++..+.. .-+...|..+-.+|.+.|
T Consensus 16 ~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g 93 (164)
T 3sz7_A 16 SEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLARFDMA 93 (164)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcc
Confidence 35667778889999999888877653 2367888888888888899999999888887753 225778888888888889
Q ss_pred CHHHHHHHHHHHHHc
Q 047934 258 KLEEAVEYCIEMLEA 272 (344)
Q Consensus 258 ~~~~A~~lf~~M~~~ 272 (344)
++++|.+.|++..+.
T Consensus 94 ~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 94 DYKGAKEAYEKGIEA 108 (164)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh
Confidence 999998888887764
No 117
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=97.49 E-value=0.0035 Score=48.71 Aligned_cols=87 Identities=13% Similarity=0.040 Sum_probs=39.7
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 047934 182 GLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEE 261 (344)
Q Consensus 182 ~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~ 261 (344)
.+.+.|++++|.+.|+...+.. +.+...|..+-.+|.+.|++++|...|++..+.. .-+...|..+-.+|...|++++
T Consensus 13 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~ 90 (126)
T 3upv_A 13 EYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYAS 90 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhCHHH
Confidence 3444555555555555444331 1234444444445555555555555554444431 1123444444444445555555
Q ss_pred HHHHHHHHH
Q 047934 262 AVEYCIEML 270 (344)
Q Consensus 262 A~~lf~~M~ 270 (344)
|.+.|++..
T Consensus 91 A~~~~~~al 99 (126)
T 3upv_A 91 ALETLDAAR 99 (126)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555444443
No 118
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=97.48 E-value=0.00085 Score=62.25 Aligned_cols=157 Identities=13% Similarity=-0.016 Sum_probs=111.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHH
Q 047934 150 NEPISEPPQEADEIFKKMKETGLIPNA-------VAMLDGLCKDGLIQEAMKLFGLMREK----GTIP-EVVIYTAVVDG 217 (344)
Q Consensus 150 ~~~~sg~~~~A~~lf~~M~~~gi~p~~-------~tli~~~~k~g~~~~A~~lf~~M~~~----g~~p-d~~tyn~LI~a 217 (344)
.++..|++++|...|++..+.+-. +. ..+-..|...|++++|...|+...+. +-.+ ...++..+-..
T Consensus 18 ~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 96 (406)
T 3sf4_A 18 RLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNT 96 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 344578899999999998876422 21 23667888899999999999876433 2111 25677888888
Q ss_pred HHHcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHHHc
Q 047934 218 FCKAQKFDDAKRIFRKMQSNGI-APN----AFSYNLLIQGLYKCNK--------------------LEEAVEYCIEMLEA 272 (344)
Q Consensus 218 y~k~g~~e~A~~vf~~M~~~gi-~pd----~~tyn~LI~ay~k~g~--------------------~~~A~~lf~~M~~~ 272 (344)
|...|++++|...|++..+..- ..+ ..+|..+-..|...|+ +++|.+.+++....
T Consensus 97 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~ 176 (406)
T 3sf4_A 97 LKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSL 176 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999887754310 012 4478888888888999 89998888876542
Q ss_pred ----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 047934 273 ----GHSP-NVTTFVGLVDGLCRERGVEKAQSVIATLKEK 307 (344)
Q Consensus 273 ----gv~p-d~~ty~~lL~a~~~~G~~e~a~~l~~~M~~~ 307 (344)
+-.+ ...++..+-..|...|++++|.+.+++..+.
T Consensus 177 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 216 (406)
T 3sf4_A 177 VTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLI 216 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHH
T ss_pred HHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 2111 1345677777888889999998888877643
No 119
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=97.47 E-value=0.00045 Score=64.87 Aligned_cols=179 Identities=12% Similarity=-0.035 Sum_probs=124.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHC----CCCCC----HHHHHHHHHHcCCHHHHHHHHHHHHHc----C-CCCCHHHHHHHHH
Q 047934 150 NEPISEPPQEADEIFKKMKET----GLIPN----AVAMLDGLCKDGLIQEAMKLFGLMREK----G-TIPEVVIYTAVVD 216 (344)
Q Consensus 150 ~~~~sg~~~~A~~lf~~M~~~----gi~p~----~~tli~~~~k~g~~~~A~~lf~~M~~~----g-~~pd~~tyn~LI~ 216 (344)
.++..|++++|.+.|++..+. +..|. +..+-..|...|++++|.+.|+...+. + ......++..+-.
T Consensus 95 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~ 174 (411)
T 4a1s_A 95 AYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGN 174 (411)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHH
Confidence 344478999999999987653 11121 124677888999999999999877543 1 1123567888899
Q ss_pred HHHHcCC-----------------HHHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 047934 217 GFCKAQK-----------------FDDAKRIFRKMQSN----GI-APNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGH 274 (344)
Q Consensus 217 ay~k~g~-----------------~e~A~~vf~~M~~~----gi-~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv 274 (344)
.|...|+ +++|...+++..+. +- .....+|..+-..|...|++++|.+.|++..+..-
T Consensus 175 ~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 254 (411)
T 4a1s_A 175 VYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAR 254 (411)
T ss_dssp HHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 9999999 99999998876442 11 11235788889999999999999999998765311
Q ss_pred -CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC----Cc-ccHHHHHHHHhccCCCCh
Q 047934 275 -SPN----VTTFVGLVDGLCRERGVEKAQSVIATLKEKG----FL-VNDKAVREFLDKKAPFSS 328 (344)
Q Consensus 275 -~pd----~~ty~~lL~a~~~~G~~e~a~~l~~~M~~~G----i~-p~~~~~~~Ll~~yak~g~ 328 (344)
..+ ..++..+...|...|++++|.+.+++..+.. -. ....++..+-..|...|.
T Consensus 255 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 318 (411)
T 4a1s_A 255 EFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHE 318 (411)
T ss_dssp HHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred hcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC
Confidence 112 2367788888999999999999998876531 11 113445555555555554
No 120
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=97.46 E-value=0.002 Score=64.11 Aligned_cols=137 Identities=8% Similarity=-0.051 Sum_probs=97.0
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 047934 186 DGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEY 265 (344)
Q Consensus 186 ~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~l 265 (344)
.|+.++|.+.|++..+.. +-+...|..+-..|...|++++|...|++..+.. .-+...|..+-.+|.+.|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 477899999998876542 2367889999999999999999999999998763 23578899999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCcccHHHHHHHHhccCCC
Q 047934 266 CIEMLEAGHSPNVTTFVGLVDGLCRERGVEKAQSVIATLKEKGFLVNDKAVREFLDKKAPF 326 (344)
Q Consensus 266 f~~M~~~gv~pd~~ty~~lL~a~~~~G~~e~a~~l~~~M~~~Gi~p~~~~~~~Ll~~yak~ 326 (344)
|++..+.. .-+...+..+-..|...|++++|.+.++...+..- -+...+..+...|...
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~ 138 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP-EEPYITAQLLNWRRRL 138 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHT
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHh
Confidence 99988763 23578888999999999999999999999887632 2345566666666555
No 121
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.46 E-value=0.0011 Score=49.53 Aligned_cols=91 Identities=12% Similarity=-0.020 Sum_probs=44.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHc
Q 047934 179 MLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAP--NAFSYNLLIQGLYKC 256 (344)
Q Consensus 179 li~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~p--d~~tyn~LI~ay~k~ 256 (344)
+-..+...|++++|...|+...+.. +.+..++..+-.+|...|++++|...|++..+.. .. +...|..+..+|.+.
T Consensus 12 ~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~~~~~ 89 (112)
T 2kck_A 12 EGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADALRYI 89 (112)
T ss_dssp HHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHHHTTC
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHHHHHH
Confidence 3444445555555555555544432 1234445555555555555555555555554431 11 244455555555555
Q ss_pred -CCHHHHHHHHHHHHH
Q 047934 257 -NKLEEAVEYCIEMLE 271 (344)
Q Consensus 257 -g~~~~A~~lf~~M~~ 271 (344)
|++++|.+.|.+...
T Consensus 90 ~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 90 EGKEVEAEIAEARAKL 105 (112)
T ss_dssp SSCSHHHHHHHHHHGG
T ss_pred hCCHHHHHHHHHHHhh
Confidence 555555555555443
No 122
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=97.46 E-value=0.0084 Score=44.75 Aligned_cols=94 Identities=17% Similarity=0.082 Sum_probs=79.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 047934 177 VAMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKC 256 (344)
Q Consensus 177 ~tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~ 256 (344)
..+...+...|++++|.+.|+...+.. +.+...+..+-..|...|++++|...+++..+.. ..+...|..+..+|.+.
T Consensus 8 ~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~ 85 (118)
T 1elw_A 8 KEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFL 85 (118)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHH
Confidence 346677888999999999999887753 3478888999999999999999999999988753 22578889999999999
Q ss_pred CCHHHHHHHHHHHHHc
Q 047934 257 NKLEEAVEYCIEMLEA 272 (344)
Q Consensus 257 g~~~~A~~lf~~M~~~ 272 (344)
|++++|.+.|++..+.
T Consensus 86 ~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 86 NRFEEAKRTYEEGLKH 101 (118)
T ss_dssp TCHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHc
Confidence 9999999999988765
No 123
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=97.45 E-value=0.0028 Score=51.73 Aligned_cols=91 Identities=11% Similarity=-0.012 Sum_probs=58.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 047934 179 MLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNK 258 (344)
Q Consensus 179 li~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~ 258 (344)
+-..+...|++++|...|+...... +.+...|..+-.+|...|++++|...|++..... .-+...|..+-.+|...|+
T Consensus 27 ~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~ 104 (148)
T 2vgx_A 27 LAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAECLLQXGE 104 (148)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcCC
Confidence 4555666777777777777665542 2356666666667777777777777777766542 1244566666667777777
Q ss_pred HHHHHHHHHHHHH
Q 047934 259 LEEAVEYCIEMLE 271 (344)
Q Consensus 259 ~~~A~~lf~~M~~ 271 (344)
+++|.+.|++..+
T Consensus 105 ~~~A~~~~~~al~ 117 (148)
T 2vgx_A 105 LAEAESGLFLAQE 117 (148)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7777777766654
No 124
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.45 E-value=0.0031 Score=50.59 Aligned_cols=92 Identities=8% Similarity=-0.081 Sum_probs=59.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 047934 179 MLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNK 258 (344)
Q Consensus 179 li~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~ 258 (344)
+-..+.+.|++++|...|+...... +-+...|..+-.+|...|++++|...|+...... .-+...|..+-.+|...|+
T Consensus 24 ~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~ 101 (142)
T 2xcb_A 24 LGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECHLQLGD 101 (142)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCC
Confidence 4455666777777777777666542 2356666666677777777777777777766542 1244556666667777777
Q ss_pred HHHHHHHHHHHHHc
Q 047934 259 LEEAVEYCIEMLEA 272 (344)
Q Consensus 259 ~~~A~~lf~~M~~~ 272 (344)
+++|.+.|++..+.
T Consensus 102 ~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 102 LDGAESGFYSARAL 115 (142)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 77777777766543
No 125
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=97.44 E-value=0.0086 Score=46.42 Aligned_cols=98 Identities=13% Similarity=0.164 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 047934 208 VVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVDG 287 (344)
Q Consensus 208 ~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a 287 (344)
...|..+-..+.+.|++++|...|++..+.. .-+...|..+-.+|.+.|++++|++.|++..+.. .-+...|..+-.+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 3456667778889999999999999987753 2367899999999999999999999999988753 2357788889999
Q ss_pred HHHcCCHHHHHHHHHHHHHC
Q 047934 288 LCRERGVEKAQSVIATLKEK 307 (344)
Q Consensus 288 ~~~~G~~e~a~~l~~~M~~~ 307 (344)
+...|++++|.+.++...+.
T Consensus 82 ~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHh
Confidence 99999999999999988765
No 126
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=97.44 E-value=0.0052 Score=57.04 Aligned_cols=155 Identities=15% Similarity=0.100 Sum_probs=112.6
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHH
Q 047934 153 ISEPPQEADEIFKKMKETGLIPNA-------VAMLDGLCKDGLIQEAMKLFGLMREKGT-IPE----VVIYTAVVDGFCK 220 (344)
Q Consensus 153 ~sg~~~~A~~lf~~M~~~gi~p~~-------~tli~~~~k~g~~~~A~~lf~~M~~~g~-~pd----~~tyn~LI~ay~k 220 (344)
..|++++|..++++.....-..+. ..+-..|...|++++|.+.+++..+..- ..+ ..++..+-..|..
T Consensus 26 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 105 (373)
T 1hz4_A 26 NDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFA 105 (373)
T ss_dssp HTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 368899999999997764322121 1244667788999999999988764210 112 2346677788899
Q ss_pred cCCHHHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--C--CHHHHHHHHHHHH
Q 047934 221 AQKFDDAKRIFRKMQSN----GIA--P-NAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHS--P--NVTTFVGLVDGLC 289 (344)
Q Consensus 221 ~g~~e~A~~vf~~M~~~----gi~--p-d~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~--p--d~~ty~~lL~a~~ 289 (344)
.|++++|...+++..+. +.. | ....+..+-..|...|++++|...+++.....-. + ...+|..+-..+.
T Consensus 106 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 185 (373)
T 1hz4_A 106 QGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSL 185 (373)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHH
Confidence 99999999999887653 222 2 2446677888899999999999999988764221 1 2456777888888
Q ss_pred HcCCHHHHHHHHHHHHHC
Q 047934 290 RERGVEKAQSVIATLKEK 307 (344)
Q Consensus 290 ~~G~~e~a~~l~~~M~~~ 307 (344)
..|++++|...++.....
T Consensus 186 ~~g~~~~A~~~l~~a~~~ 203 (373)
T 1hz4_A 186 ARGDLDNARSQLNRLENL 203 (373)
T ss_dssp HHTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 999999999999987653
No 127
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=97.43 E-value=0.00079 Score=61.73 Aligned_cols=140 Identities=11% Similarity=0.047 Sum_probs=72.4
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHHcCCHHHHH
Q 047934 154 SEPPQEADEIFKKMKETGLIPNAVAMLDGLCKDGLIQEAMKLFGLMREK----GTIP-EVVIYTAVVDGFCKAQKFDDAK 228 (344)
Q Consensus 154 sg~~~~A~~lf~~M~~~gi~p~~~tli~~~~k~g~~~~A~~lf~~M~~~----g~~p-d~~tyn~LI~ay~k~g~~e~A~ 228 (344)
.+++++|..+|... ...|...|++++|.+.|.+..+. +-.. -..+|+.+-.+|.+.|++++|.
T Consensus 29 ~~~~~~A~~~~~~a------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~ 96 (307)
T 2ifu_A 29 KPDYDSAASEYAKA------------AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAV 96 (307)
T ss_dssp SCCHHHHHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGH
T ss_pred CCCHHHHHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 35566666666553 23555666666666666554322 1000 1345566666666666666666
Q ss_pred HHHHHHHHC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHHcCCHHHHH
Q 047934 229 RIFRKMQSN----GIAP-NAFSYNLLIQGLYKCNKLEEAVEYCIEMLEA----GHSP-NVTTFVGLVDGLCRERGVEKAQ 298 (344)
Q Consensus 229 ~vf~~M~~~----gi~p-d~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~----gv~p-d~~ty~~lL~a~~~~G~~e~a~ 298 (344)
..|++..+. |-.. -..+|+.+-..|.. |++++|++.|++..+. +-.. ...++..+-..|...|++++|.
T Consensus 97 ~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~ 175 (307)
T 2ifu_A 97 QYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAA 175 (307)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHH
Confidence 666554321 1000 12345555555555 6666666666654432 1000 1244555566666666666666
Q ss_pred HHHHHHHH
Q 047934 299 SVIATLKE 306 (344)
Q Consensus 299 ~l~~~M~~ 306 (344)
+.++...+
T Consensus 176 ~~~~~al~ 183 (307)
T 2ifu_A 176 ASLQKEKS 183 (307)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66665544
No 128
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.42 E-value=0.0048 Score=52.18 Aligned_cols=128 Identities=13% Similarity=0.013 Sum_probs=90.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCC-C---C-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 047934 178 AMLDGLCKDGLIQEAMKLFGLMREKGTI-P---E-----------VVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPN 242 (344)
Q Consensus 178 tli~~~~k~g~~~~A~~lf~~M~~~g~~-p---d-----------~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd 242 (344)
.+-..+.+.|++++|.++|....+..-. + . ..+|..+-.+|.+.|++++|...++...+.. ..+
T Consensus 43 ~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~ 121 (198)
T 2fbn_A 43 EEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID-KNN 121 (198)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccc
Confidence 3556778899999999999988764211 1 1 2788888889999999999999999988752 336
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHC
Q 047934 243 AFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRERGVEKAQ-SVIATLKEK 307 (344)
Q Consensus 243 ~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~~e~a~-~l~~~M~~~ 307 (344)
...|..+-.+|...|++++|.+.|++..+.. .-+...+..+...+...++.+++. ..+..|...
T Consensus 122 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 122 VKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC------------
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 7788899999999999999999999987652 225666777777777777666665 555555444
No 129
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=97.41 E-value=0.004 Score=54.98 Aligned_cols=127 Identities=12% Similarity=0.041 Sum_probs=100.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CC-CHHHHHHHHHH
Q 047934 178 AMLDGLCKDGLIQEAMKLFGLMREKGTIPE---VVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGI-AP-NAFSYNLLIQG 252 (344)
Q Consensus 178 tli~~~~k~g~~~~A~~lf~~M~~~g~~pd---~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi-~p-d~~tyn~LI~a 252 (344)
.+-..+.+.|++++|...|+.+.+..- -+ ...+..+-.+|.+.|++++|...|+...+..- .+ ....|..+-.+
T Consensus 20 ~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~ 98 (261)
T 3qky_A 20 ERAMEFYNQGKYDRAIEYFKAVFTYGR-THEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMC 98 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHGGGCS-CSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhCC-CCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHH
Confidence 356677889999999999999987631 13 67888888999999999999999999988521 12 24567777888
Q ss_pred HHH--------cCCHHHHHHHHHHHHHcCCCCC-HHHH-----------------HHHHHHHHHcCCHHHHHHHHHHHHH
Q 047934 253 LYK--------CNKLEEAVEYCIEMLEAGHSPN-VTTF-----------------VGLVDGLCRERGVEKAQSVIATLKE 306 (344)
Q Consensus 253 y~k--------~g~~~~A~~lf~~M~~~gv~pd-~~ty-----------------~~lL~a~~~~G~~e~a~~l~~~M~~ 306 (344)
|.+ .|++++|+..|++..... |+ .... ..+-..|...|++++|...++.+.+
T Consensus 99 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 176 (261)
T 3qky_A 99 YYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFD 176 (261)
T ss_dssp HHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 888 999999999999988753 22 1222 4456778899999999999999887
Q ss_pred C
Q 047934 307 K 307 (344)
Q Consensus 307 ~ 307 (344)
.
T Consensus 177 ~ 177 (261)
T 3qky_A 177 A 177 (261)
T ss_dssp H
T ss_pred H
Confidence 5
No 130
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.39 E-value=0.0036 Score=46.50 Aligned_cols=99 Identities=16% Similarity=0.079 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHH
Q 047934 208 VVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHS-PNVTTFVGLVD 286 (344)
Q Consensus 208 ~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~-pd~~ty~~lL~ 286 (344)
..++..+-..+...|++++|...|++..+.. ..+...|..+-.+|...|++++|.+.|++..+..-. .+...+..+..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 4456667777888899999999998887653 236778888888889999999999999888775311 14777888888
Q ss_pred HHHHc-CCHHHHHHHHHHHHHC
Q 047934 287 GLCRE-RGVEKAQSVIATLKEK 307 (344)
Q Consensus 287 a~~~~-G~~e~a~~l~~~M~~~ 307 (344)
.|... |+.++|.+.+....+.
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHhCCHHHHHHHHHHHhhc
Confidence 88889 9999999999887765
No 131
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.38 E-value=0.0091 Score=48.76 Aligned_cols=99 Identities=10% Similarity=-0.017 Sum_probs=79.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 047934 207 EVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVD 286 (344)
Q Consensus 207 d~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~ 286 (344)
+...+..+-..|.+.|++++|...|++..+.. .-+...|..+-.+|.+.|++++|+..|++..+.. .-+...|..+-.
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 45667777788888999999999998887753 2267788888888999999999999998887753 225777888888
Q ss_pred HHHHcCCHHHHHHHHHHHHHC
Q 047934 287 GLCRERGVEKAQSVIATLKEK 307 (344)
Q Consensus 287 a~~~~G~~e~a~~l~~~M~~~ 307 (344)
+|...|++++|.+.+....+.
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHh
Confidence 888899999999988887764
No 132
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.37 E-value=0.00024 Score=55.33 Aligned_cols=83 Identities=14% Similarity=0.176 Sum_probs=34.8
Q ss_pred CCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 047934 187 GLIQEAMKLFGLMREKG--TIPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVE 264 (344)
Q Consensus 187 g~~~~A~~lf~~M~~~g--~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~ 264 (344)
|++++|+..|+...+.+ -+-+..++..+-.+|...|++++|...|++..+..-. +...|..+-.+|.+.|++++|+.
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHHHH
Confidence 44444555554444432 1112334444444444445555555544444443211 23444444444444444444444
Q ss_pred HHHHHH
Q 047934 265 YCIEML 270 (344)
Q Consensus 265 lf~~M~ 270 (344)
.|++..
T Consensus 83 ~~~~al 88 (117)
T 3k9i_A 83 LLLKII 88 (117)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 133
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=97.37 E-value=0.00068 Score=55.50 Aligned_cols=134 Identities=9% Similarity=0.016 Sum_probs=98.3
Q ss_pred HcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 047934 185 KDGLIQEAMKLFGLMREKGTIP-EVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAV 263 (344)
Q Consensus 185 k~g~~~~A~~lf~~M~~~g~~p-d~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~ 263 (344)
..|++++|++.+...... .| +...+-.|-..|.+.|++++|...|++..+.. .-+...|..+-.+|.+.|++++|+
T Consensus 9 ~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~ 85 (150)
T 4ga2_A 9 SKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKAV 85 (150)
T ss_dssp CHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHHH
Confidence 446788888888765432 22 23445567788999999999999999988753 226889999999999999999999
Q ss_pred HHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHH-HHHHHHCCCccc-HHHHHHHHhccCC
Q 047934 264 EYCIEMLEAGHSP-NVTTFVGLVDGLCRERGVEKAQSV-IATLKEKGFLVN-DKAVREFLDKKAP 325 (344)
Q Consensus 264 ~lf~~M~~~gv~p-d~~ty~~lL~a~~~~G~~e~a~~l-~~~M~~~Gi~p~-~~~~~~Ll~~yak 325 (344)
..|++..+. .| +..+|..+-..|.+.|+.+++.+. ++...+. .|+ ..+|...-..+..
T Consensus 86 ~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l--~P~~~~~~~l~~~ll~~ 146 (150)
T 4ga2_A 86 ECYRRSVEL--NPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL--FPGSPAVYKLKEQLLDC 146 (150)
T ss_dssp HHHHHHHHH--CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH--STTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHH
Confidence 999998875 34 577888899999999998876655 5666653 343 3444443333333
No 134
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.35 E-value=0.0067 Score=47.35 Aligned_cols=93 Identities=16% Similarity=0.050 Sum_probs=80.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 047934 178 AMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCN 257 (344)
Q Consensus 178 tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g 257 (344)
.+-..+...|++++|...|....+.. +.+...|..+-.+|...|++++|...|+...+.. .-+...|..+-.+|...|
T Consensus 14 ~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~ 91 (137)
T 3q49_B 14 EQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQLEME 91 (137)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHHh
Confidence 46778889999999999999887764 3468899999999999999999999999988753 226788999999999999
Q ss_pred CHHHHHHHHHHHHHc
Q 047934 258 KLEEAVEYCIEMLEA 272 (344)
Q Consensus 258 ~~~~A~~lf~~M~~~ 272 (344)
++++|...|++..+.
T Consensus 92 ~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 92 SYDEAIANLQRAYSL 106 (137)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH
Confidence 999999999988753
No 135
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=97.35 E-value=0.0021 Score=58.47 Aligned_cols=146 Identities=10% Similarity=0.048 Sum_probs=111.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHHHc
Q 047934 178 AMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLI-QGLYKC 256 (344)
Q Consensus 178 tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI-~ay~k~ 256 (344)
.+-..+...|++++|.+.|+...+.. +-+...+..|-..|...|++++|..+++..... .|+........ ..+.+.
T Consensus 122 ~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~~~l~~~ 198 (287)
T 3qou_A 122 QQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQIELLXQ 198 (287)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHHHHHHhh
Confidence 45667788999999999999987753 236788999999999999999999999988664 45655433333 336677
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCc-ccHHHHHHHHhccCCCC
Q 047934 257 NKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRERGVEKAQSVIATLKEKGFL-VNDKAVREFLDKKAPFS 327 (344)
Q Consensus 257 g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~~e~a~~l~~~M~~~Gi~-p~~~~~~~Ll~~yak~g 327 (344)
+..++|...+++..... .-+...+..+-..+...|+.++|...+..+.+..-. .+...+..+...|...|
T Consensus 199 ~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 199 AADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred cccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 88888999998887753 336788889999999999999999999999886422 22455666666655444
No 136
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=97.34 E-value=0.0041 Score=51.38 Aligned_cols=99 Identities=12% Similarity=0.033 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 047934 208 VVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVDG 287 (344)
Q Consensus 208 ~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a 287 (344)
...+..+-..+.+.|++++|...|+...... +-+...|..+-.+|.+.|++++|++.|++..... +-+...|..+-.+
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~ 113 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHH
Confidence 4466667778899999999999999998763 2368899999999999999999999999998763 2256788889999
Q ss_pred HHHcCCHHHHHHHHHHHHHCC
Q 047934 288 LCRERGVEKAQSVIATLKEKG 308 (344)
Q Consensus 288 ~~~~G~~e~a~~l~~~M~~~G 308 (344)
|...|++++|.+.|+...+..
T Consensus 114 ~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHcCCHHHHHHHHHHHHHhC
Confidence 999999999999999988764
No 137
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.32 E-value=0.0087 Score=65.96 Aligned_cols=163 Identities=12% Similarity=0.077 Sum_probs=104.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 047934 150 NEPISEPPQEADEIFKKMKETGLIPN-AVAMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAK 228 (344)
Q Consensus 150 ~~~~sg~~~~A~~lf~~M~~~gi~p~-~~tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~ 228 (344)
.+...|++++|.+.+....+..-.|. -+.+..+|++.+++++...+. + .++...|..+=..|...|++++|.
T Consensus 1143 ~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~ 1215 (1630)
T 1xi4_A 1143 AANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAK 1215 (1630)
T ss_pred HHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHH
Confidence 34447889999999987665441111 124778888888877533332 1 235556666777777777777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------------cCCCCCHHHHHHH
Q 047934 229 RIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLE------------------------AGHSPNVTTFVGL 284 (344)
Q Consensus 229 ~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~------------------------~gv~pd~~ty~~l 284 (344)
.+|... ..|..+..+|++.|++++|.+.+.+-.. .++..+...+..+
T Consensus 1216 ~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeel 1286 (1630)
T 1xi4_A 1216 LLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEEL 1286 (1630)
T ss_pred HHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHH
Confidence 777763 2677777777777777777666544211 1133356667788
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCcccHHHHHHHHhccCCCChH
Q 047934 285 VDGLCRERGVEKAQSVIATLKEKGFLVNDKAVREFLDKKAPFSSS 329 (344)
Q Consensus 285 L~a~~~~G~~e~a~~l~~~M~~~Gi~p~~~~~~~Ll~~yak~g~~ 329 (344)
+..|.+.|.+++|..+++.-.... .-....|+.|-..|++....
T Consensus 1287 i~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~pe 1330 (1630)
T 1xi4_A 1287 INYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQ 1330 (1630)
T ss_pred HHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHH
Confidence 888999999999999997665443 33445666666667766653
No 138
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=97.31 E-value=0.0047 Score=57.29 Aligned_cols=155 Identities=12% Similarity=-0.040 Sum_probs=108.5
Q ss_pred CCCCCHHHHHHHHHHHHHC----CCC--CCHH----HHHHHHHHcCCHHHHHHHHHHHHHcCCC----CCHHHHHHHHHH
Q 047934 152 PISEPPQEADEIFKKMKET----GLI--PNAV----AMLDGLCKDGLIQEAMKLFGLMREKGTI----PEVVIYTAVVDG 217 (344)
Q Consensus 152 ~~sg~~~~A~~lf~~M~~~----gi~--p~~~----tli~~~~k~g~~~~A~~lf~~M~~~g~~----pd~~tyn~LI~a 217 (344)
...|++++|.+.+++..+. +.. |... .+-..|...|++++|..++++..+..-. ....+|..+-..
T Consensus 104 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 183 (373)
T 1hz4_A 104 FAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQC 183 (373)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHH
Confidence 3478899999999987652 222 2221 2556778899999999999987654221 134678888889
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCC-CHHHHH-----HHHHHHHHcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHH
Q 047934 218 FCKAQKFDDAKRIFRKMQSNGIAP-NAFSYN-----LLIQGLYKCNKLEEAVEYCIEMLEAGHSP---NVTTFVGLVDGL 288 (344)
Q Consensus 218 y~k~g~~e~A~~vf~~M~~~gi~p-d~~tyn-----~LI~ay~k~g~~~~A~~lf~~M~~~gv~p---d~~ty~~lL~a~ 288 (344)
+...|++++|...+++.....-.+ +...|. .++..+...|+.++|...+++.......+ ....+..+...+
T Consensus 184 ~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~ 263 (373)
T 1hz4_A 184 SLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQ 263 (373)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHH
Confidence 999999999999999886531111 111222 23345779999999999998876533211 133566777888
Q ss_pred HHcCCHHHHHHHHHHHHH
Q 047934 289 CRERGVEKAQSVIATLKE 306 (344)
Q Consensus 289 ~~~G~~e~a~~l~~~M~~ 306 (344)
...|+.++|.++++....
T Consensus 264 ~~~g~~~~A~~~l~~a~~ 281 (373)
T 1hz4_A 264 ILLGEFEPAEIVLEELNE 281 (373)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 899999999999988754
No 139
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=97.31 E-value=0.0024 Score=53.39 Aligned_cols=123 Identities=10% Similarity=-0.019 Sum_probs=90.0
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHHcC
Q 047934 183 LCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQSN----GIA-PNAFSYNLLIQGLYKCN 257 (344)
Q Consensus 183 ~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~----gi~-pd~~tyn~LI~ay~k~g 257 (344)
....|++++|.++++.+... ......++..+-..|...|++++|...|++..+. +.. ....++..+-..|...|
T Consensus 2 ~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 80 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAG 80 (203)
T ss_dssp -----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred ccccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC
Confidence 34678999999966655432 2246788899999999999999999999987662 222 13467888888999999
Q ss_pred CHHHHHHHHHHHHHc----CCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 047934 258 KLEEAVEYCIEMLEA----GHSP--NVTTFVGLVDGLCRERGVEKAQSVIATLKE 306 (344)
Q Consensus 258 ~~~~A~~lf~~M~~~----gv~p--d~~ty~~lL~a~~~~G~~e~a~~l~~~M~~ 306 (344)
++++|.+.+++.... +-.+ ....+..+-..+...|++++|.+.+.+..+
T Consensus 81 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 135 (203)
T 3gw4_A 81 NWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLV 135 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 999999999987653 2111 234567777888899999999999998764
No 140
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=97.29 E-value=0.0034 Score=57.79 Aligned_cols=140 Identities=11% Similarity=-0.026 Sum_probs=102.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHc
Q 047934 179 MLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPN--AFSYNLLIQGLYKC 256 (344)
Q Consensus 179 li~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd--~~tyn~LI~ay~k~ 256 (344)
+...+...|++++|.++|..+...+ |+....-.+-..|.+.+++++|+..|+...... .|. ...+..+=.+|.+.
T Consensus 108 yA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~~L 184 (282)
T 4f3v_A 108 FAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAANL 184 (282)
T ss_dssp HHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHHHC
Confidence 5577888999999999998876543 444355555568889999999999998554321 111 23567777889999
Q ss_pred CCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCcccHHHHHHHHhcc
Q 047934 257 NKLEEAVEYCIEMLEAGHSPN--VTTFVGLVDGLCRERGVEKAQSVIATLKEKGFLVNDKAVREFLDKK 323 (344)
Q Consensus 257 g~~~~A~~lf~~M~~~gv~pd--~~ty~~lL~a~~~~G~~e~a~~l~~~M~~~Gi~p~~~~~~~Ll~~y 323 (344)
|++++|+..|++.......|. .......-.++.+.|+.++|..+|+.+... .|+......|.+.-
T Consensus 185 G~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~--~P~~~~~~aL~~~~ 251 (282)
T 4f3v_A 185 ALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT--HPEPKVAAALKDPS 251 (282)
T ss_dssp TCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--SCCHHHHHHHHCTT
T ss_pred CCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcHHHHHHHhCCC
Confidence 999999999999875444354 335556667778899999999999999886 34456666665543
No 141
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.29 E-value=0.0064 Score=48.67 Aligned_cols=97 Identities=14% Similarity=-0.029 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 047934 209 VIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGL 288 (344)
Q Consensus 209 ~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~ 288 (344)
..+..+-..+.+.|++++|...|+...... .-+...|..+-.+|.+.|++++|+..|++..... .-+...+..+-.+|
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHH
Confidence 445556677889999999999999988753 2367888899999999999999999999988763 23566777888889
Q ss_pred HHcCCHHHHHHHHHHHHHC
Q 047934 289 CRERGVEKAQSVIATLKEK 307 (344)
Q Consensus 289 ~~~G~~e~a~~l~~~M~~~ 307 (344)
...|++++|.+.++...+.
T Consensus 97 ~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 9999999999999988764
No 142
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=97.28 E-value=0.0088 Score=47.94 Aligned_cols=98 Identities=10% Similarity=0.083 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 047934 208 VVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVDG 287 (344)
Q Consensus 208 ~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a 287 (344)
...+..+-..+...|++++|...|+...+.. ..+...|..+..+|...|++++|.+.|++..... ..+...|..+-..
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~ 90 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 3566777788899999999999999987753 2368889999999999999999999999988753 3367788888899
Q ss_pred HHHcCCHHHHHHHHHHHHHC
Q 047934 288 LCRERGVEKAQSVIATLKEK 307 (344)
Q Consensus 288 ~~~~G~~e~a~~l~~~M~~~ 307 (344)
+...|++++|.+.+....+.
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~ 110 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKV 110 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHh
Confidence 99999999999999998875
No 143
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=97.25 E-value=0.016 Score=52.19 Aligned_cols=150 Identities=10% Similarity=0.010 Sum_probs=106.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC---CCC--HHHHH
Q 047934 178 AMLDGLCKDGLIQEAMKLFGLMREKGTIPE-----VVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGI---APN--AFSYN 247 (344)
Q Consensus 178 tli~~~~k~g~~~~A~~lf~~M~~~g~~pd-----~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi---~pd--~~tyn 247 (344)
..+..+...|++++|.+.+....+..-... ...+..+...|...|++++|...|++..+... .+. ..+|+
T Consensus 80 ~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 2qfc_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 357788899999999999988776532211 12334455667788999999999998875321 122 55899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc-CCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCcc-cHHHH
Q 047934 248 LLIQGLYKCNKLEEAVEYCIEMLEA-GHSPN-----VTTFVGLVDGLCRERGVEKAQSVIATLKEK----GFLV-NDKAV 316 (344)
Q Consensus 248 ~LI~ay~k~g~~~~A~~lf~~M~~~-gv~pd-----~~ty~~lL~a~~~~G~~e~a~~l~~~M~~~----Gi~p-~~~~~ 316 (344)
.+-..|...|++++|++.|++..+. ...++ ..+|..+-..|...|++++|.+.++...+. +... -..++
T Consensus 160 ~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~ 239 (293)
T 2qfc_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 9999999999999999999988732 11122 257888899999999999999999987643 1111 14455
Q ss_pred HHHHhccCCCC
Q 047934 317 REFLDKKAPFS 327 (344)
Q Consensus 317 ~~Ll~~yak~g 327 (344)
..+-..|.+.|
T Consensus 240 ~~lg~~y~~~g 250 (293)
T 2qfc_A 240 YQRGECLRKLE 250 (293)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHcC
Confidence 55555555554
No 144
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=97.25 E-value=0.0071 Score=49.24 Aligned_cols=99 Identities=9% Similarity=-0.022 Sum_probs=82.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 047934 207 EVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVD 286 (344)
Q Consensus 207 d~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~ 286 (344)
+...+..+-..+...|++++|...|+...... ..+...|..+-.+|.+.|++++|++.|++..... .-+...+..+-.
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~ 97 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHH
Confidence 44566777788899999999999999987753 2378889999999999999999999999988753 225677888888
Q ss_pred HHHHcCCHHHHHHHHHHHHHC
Q 047934 287 GLCRERGVEKAQSVIATLKEK 307 (344)
Q Consensus 287 a~~~~G~~e~a~~l~~~M~~~ 307 (344)
+|...|++++|.+.++...+.
T Consensus 98 ~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999988764
No 145
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=97.23 E-value=0.0018 Score=66.82 Aligned_cols=169 Identities=11% Similarity=0.085 Sum_probs=126.3
Q ss_pred CCCHHHHHHHHHHHHHCC---------CCCC---------------HHHHHHHHHHcCCHHHHHHHHHHHHHc-C-CCCC
Q 047934 154 SEPPQEADEIFKKMKETG---------LIPN---------------AVAMLDGLCKDGLIQEAMKLFGLMREK-G-TIPE 207 (344)
Q Consensus 154 sg~~~~A~~lf~~M~~~g---------i~p~---------------~~tli~~~~k~g~~~~A~~lf~~M~~~-g-~~pd 207 (344)
.|+++.|.++|+.+.+.. -.|+ |...+....+.|..+.|..+|....+. . ..+.
T Consensus 391 ~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~ 470 (679)
T 4e6h_A 391 NTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPD 470 (679)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTH
T ss_pred hCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChH
Confidence 678999999999987641 0131 455677777889999999999998876 3 3344
Q ss_pred HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--CHHHHHHH
Q 047934 208 VVIYTAVVDGFCKA-QKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSP--NVTTFVGL 284 (344)
Q Consensus 208 ~~tyn~LI~ay~k~-g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~p--d~~ty~~l 284 (344)
..+..+.|.. ++ ++.+.|+.+|+...+. ..-+...|...++.....|+.+.|..+|++.......+ ....|...
T Consensus 471 lyi~~A~lE~--~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~ 547 (679)
T 4e6h_A 471 IYLENAYIEY--HISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKV 547 (679)
T ss_dssp HHHHHHHHHH--TTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHH
T ss_pred HHHHHHHHHH--HhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 5555555543 34 4589999999998876 34467788899998889999999999999987764322 34567888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCcccHHHHHHHHhccCCCC
Q 047934 285 VDGLCRERGVEKAQSVIATLKEKGFLVNDKAVREFLDKKAPFS 327 (344)
Q Consensus 285 L~a~~~~G~~e~a~~l~~~M~~~Gi~p~~~~~~~Ll~~yak~g 327 (344)
+.--.+.|+.+.+.++.+.+.+. .|+......+++-|.-.+
T Consensus 548 ~~fE~~~G~~~~~~~v~~R~~~~--~P~~~~~~~f~~ry~~~~ 588 (679)
T 4e6h_A 548 IFFESKVGSLNSVRTLEKRFFEK--FPEVNKLEEFTNKYKVLD 588 (679)
T ss_dssp HHHHHHTCCSHHHHHHHHHHHHH--STTCCHHHHHHHHTCBTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--CCCCcHHHHHHHHhcCCc
Confidence 88888899999999999999876 345556666677776443
No 146
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.23 E-value=0.0061 Score=67.13 Aligned_cols=111 Identities=17% Similarity=0.271 Sum_probs=66.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 047934 179 MLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNK 258 (344)
Q Consensus 179 li~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~ 258 (344)
+-.++.+.|++++|.+.|..- -|...|.-++.+|.+.|++++|.+.|....+.. ++....+.++.+|++.++
T Consensus 1111 LAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~r 1182 (1630)
T 1xi4_A 1111 LAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNR 1182 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcC
Confidence 445555566666666666332 255666667777777777777777776554432 222223346666666666
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 047934 259 LEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRERGVEKAQSVIATL 304 (344)
Q Consensus 259 ~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~~e~a~~l~~~M 304 (344)
+++...+. . .++...|..+-..|...|++++|..+|...
T Consensus 1183 leele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA 1221 (1630)
T 1xi4_A 1183 LAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV 1221 (1630)
T ss_pred HHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh
Confidence 66433322 1 345556666777777778888887777764
No 147
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.23 E-value=0.0085 Score=47.32 Aligned_cols=95 Identities=15% Similarity=0.204 Sum_probs=48.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCC----HHHHHHH
Q 047934 211 YTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAG--HSPN----VTTFVGL 284 (344)
Q Consensus 211 yn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~g--v~pd----~~ty~~l 284 (344)
+..|=..|.+.|++++|+..|++..+.. +-+...|+.+-.+|.+.|++++|++.|++..+.. ...+ ..+|..+
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 3334445555566666666665554431 1134555555556666666666666655544321 1111 1234444
Q ss_pred HHHHHHcCCHHHHHHHHHHHHH
Q 047934 285 VDGLCRERGVEKAQSVIATLKE 306 (344)
Q Consensus 285 L~a~~~~G~~e~a~~l~~~M~~ 306 (344)
-.++...|++++|.+.|+...+
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 4555556666666666665544
No 148
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.23 E-value=0.014 Score=54.96 Aligned_cols=155 Identities=9% Similarity=0.035 Sum_probs=111.2
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCC-C------------------HHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCCHHH-
Q 047934 152 PISEPPQEADEIFKKMKETGLIP-N------------------AVAMLDGLCKDGLIQEAMKLFGLMREK-GTIPEVVI- 210 (344)
Q Consensus 152 ~~sg~~~~A~~lf~~M~~~gi~p-~------------------~~tli~~~~k~g~~~~A~~lf~~M~~~-g~~pd~~t- 210 (344)
...|++++|+++|....+..-.. + ...|...|.+.|++++|.+++..+.+. +-..+..+
T Consensus 15 ~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 94 (434)
T 4b4t_Q 15 VNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTV 94 (434)
T ss_dssp HHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHH
T ss_pred HHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHH
Confidence 44688999999999988753221 1 224788999999999999999877643 11122222
Q ss_pred --HHHHH-HHHHHcCCHHHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CC--CC-C
Q 047934 211 --YTAVV-DGFCKAQKFDDAKRIFRKMQS----NGIAPN-AFSYNLLIQGLYKCNKLEEAVEYCIEMLEA--GH--SP-N 277 (344)
Q Consensus 211 --yn~LI-~ay~k~g~~e~A~~vf~~M~~----~gi~pd-~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~--gv--~p-d 277 (344)
...++ ..+...|..++|..++..... .+..+. ..++..|...|...|++++|..++++.... +. .+ .
T Consensus 95 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~ 174 (434)
T 4b4t_Q 95 KVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSL 174 (434)
T ss_dssp HHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhH
Confidence 22223 233345789999999887754 233333 567888999999999999999999987653 21 22 2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 047934 278 VTTFVGLVDGLCRERGVEKAQSVIATLKE 306 (344)
Q Consensus 278 ~~ty~~lL~a~~~~G~~e~a~~l~~~M~~ 306 (344)
..+|..+...|...|++++|..++.....
T Consensus 175 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 203 (434)
T 4b4t_Q 175 VDVHLLESKVYHKLRNLAKSKASLTAART 203 (434)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 45788899999999999999999987664
No 149
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.20 E-value=0.017 Score=44.45 Aligned_cols=92 Identities=20% Similarity=0.083 Sum_probs=59.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHH
Q 047934 179 MLDGLCKDGLIQEAMKLFGLMREKGTIPEV---VIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPN---AFSYNLLIQG 252 (344)
Q Consensus 179 li~~~~k~g~~~~A~~lf~~M~~~g~~pd~---~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd---~~tyn~LI~a 252 (344)
+-..+...|++++|...|+...+..-. +. ..+..+-.+|.+.|++++|...|+......-. + ...+..+-.+
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la~~ 85 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHH
Confidence 445566777777777777776654211 22 45566666777777777777777777664211 2 4556666677
Q ss_pred HHHcCCHHHHHHHHHHHHHc
Q 047934 253 LYKCNKLEEAVEYCIEMLEA 272 (344)
Q Consensus 253 y~k~g~~~~A~~lf~~M~~~ 272 (344)
|.+.|++++|.+.|++....
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 77777777777777776654
No 150
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.17 E-value=0.0014 Score=55.65 Aligned_cols=128 Identities=12% Similarity=0.032 Sum_probs=88.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-C---C-----------
Q 047934 178 AMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIA-P---N----------- 242 (344)
Q Consensus 178 tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~-p---d----------- 242 (344)
....+....|.+++|.+.|+.-... ..-....+..+-..|.+.|++++|...|++..+..-. + .
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~ 87 (198)
T 2fbn_A 9 HHSSGRENLYFQGAKKSIYDYTDEE-KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIE 87 (198)
T ss_dssp -------------CCCSGGGCCHHH-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHH
T ss_pred chhhhhhhhhhccccCchhhCCHHH-HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHH
Confidence 3445555666677776666532211 0113456677778889999999999999998874211 1 1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 047934 243 AFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRERGVEKAQSVIATLKEK 307 (344)
Q Consensus 243 ~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~~e~a~~l~~~M~~~ 307 (344)
...|..+-.+|.+.|++++|+..+++..... ..+...+..+-.+|...|++++|.+.+....+.
T Consensus 88 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 88 ISCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASL 151 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 2788899999999999999999999988763 336788888999999999999999999998765
No 151
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=97.16 E-value=0.0066 Score=56.80 Aligned_cols=175 Identities=10% Similarity=-0.061 Sum_probs=116.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHC----CC-CCC----HHHHHHHHHHcCCHHHHHHHHHHHHHc----CCC-CCHHHHHHHH
Q 047934 150 NEPISEPPQEADEIFKKMKET----GL-IPN----AVAMLDGLCKDGLIQEAMKLFGLMREK----GTI-PEVVIYTAVV 215 (344)
Q Consensus 150 ~~~~sg~~~~A~~lf~~M~~~----gi-~p~----~~tli~~~~k~g~~~~A~~lf~~M~~~----g~~-pd~~tyn~LI 215 (344)
.++..|+++.|...+.+..+. +. .+. +..+-..|...|++++|.+.|+...+. +-. ....+++.|-
T Consensus 150 ~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg 229 (378)
T 3q15_A 150 AYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIA 229 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 445578899999999876642 11 111 124667788999999999999877643 211 1235778888
Q ss_pred HHHHHcCCHHHHHHHHHHHHH-----CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC----CCCCHHHHHHHHH
Q 047934 216 DGFCKAQKFDDAKRIFRKMQS-----NGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAG----HSPNVTTFVGLVD 286 (344)
Q Consensus 216 ~ay~k~g~~e~A~~vf~~M~~-----~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~g----v~pd~~ty~~lL~ 286 (344)
..|...|++++|...|++..+ .. .....++..+-..|.+.|+.++|.+.+++..+.. -......+..+-.
T Consensus 230 ~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ 308 (378)
T 3q15_A 230 NSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQA 308 (378)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 899999999999999998876 32 2236788899999999999999999999987642 1222334555555
Q ss_pred HHHHcCC---HHHHHHHHHHHHHCCCcccH-HHHHHHHhccCCCCh
Q 047934 287 GLCRERG---VEKAQSVIATLKEKGFLVND-KAVREFLDKKAPFSS 328 (344)
Q Consensus 287 a~~~~G~---~e~a~~l~~~M~~~Gi~p~~-~~~~~Ll~~yak~g~ 328 (344)
.|...++ +++|..+++ +.+..++. ..+..+-..|.+.|.
T Consensus 309 ly~~~~~~~~~~~al~~~~---~~~~~~~~~~~~~~la~~y~~~g~ 351 (378)
T 3q15_A 309 VYKETVDERKIHDLLSYFE---KKNLHAYIEACARSAAAVFESSCH 351 (378)
T ss_dssp HHSSSCCHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHhCCCcHHHHHHHHHHHH---hCCChhHHHHHHHHHHHHHHHCCC
Confidence 5556777 555555544 44444433 233344455555554
No 152
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.15 E-value=0.011 Score=46.43 Aligned_cols=99 Identities=10% Similarity=0.023 Sum_probs=74.6
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 047934 206 PEVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPN----AFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTF 281 (344)
Q Consensus 206 pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd----~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty 281 (344)
.+...+..+-..+...|++++|...|++..+. .|+ ...|..+-.+|...|++++|++.+++..... ..+...+
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 102 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKAL 102 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHH
Confidence 35667777777888888888888888887764 455 5677778888888888888888888776652 2256677
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHC
Q 047934 282 VGLVDGLCRERGVEKAQSVIATLKEK 307 (344)
Q Consensus 282 ~~lL~a~~~~G~~e~a~~l~~~M~~~ 307 (344)
..+-.+|...|++++|.+.+....+.
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 77777788888888888888877764
No 153
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=97.15 E-value=0.0018 Score=53.92 Aligned_cols=147 Identities=12% Similarity=0.129 Sum_probs=103.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HH
Q 047934 176 AVAMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQG-LY 254 (344)
Q Consensus 176 ~~tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~a-y~ 254 (344)
...+-..+...|++++|...|+...+.. +-+...+..+-.+|...|++++|...|+..... .|+...+..+... +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHH
Confidence 3456677889999999999998765432 236788999999999999999999999987654 3344433332211 22
Q ss_pred HcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCcc-cHHHHHHHHhccCCCC
Q 047934 255 KCNKLEEAVEYCIEMLEAGHSP-NVTTFVGLVDGLCRERGVEKAQSVIATLKEKGFLV-NDKAVREFLDKKAPFS 327 (344)
Q Consensus 255 k~g~~~~A~~lf~~M~~~gv~p-d~~ty~~lL~a~~~~G~~e~a~~l~~~M~~~Gi~p-~~~~~~~Ll~~yak~g 327 (344)
+.+...+|...|++..+. .| +...+..+-..+...|++++|...+..+.+..=.+ +...+..+...|...|
T Consensus 86 ~~~~~~~a~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g 158 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAA--NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALG 158 (176)
T ss_dssp HHHTSCHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHC
T ss_pred hhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhC
Confidence 222333567888887764 34 57888889999999999999999999998764322 2345555555544433
No 154
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.14 E-value=0.007 Score=47.47 Aligned_cols=94 Identities=11% Similarity=-0.091 Sum_probs=65.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 047934 176 AVAMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYK 255 (344)
Q Consensus 176 ~~tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k 255 (344)
+..+-..+.+.|++++|...|+...+.. +-+...|..+-.++...|++++|+..|++..+..- -+...|..+-.+|.+
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHH
Confidence 4445566677788888888887776642 23666777777777777888888888777766421 145667777777777
Q ss_pred cCCHHHHHHHHHHHHH
Q 047934 256 CNKLEEAVEYCIEMLE 271 (344)
Q Consensus 256 ~g~~~~A~~lf~~M~~ 271 (344)
.|++++|+..|++..+
T Consensus 98 ~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 98 EHNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHH
Confidence 7778887777777654
No 155
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.13 E-value=0.00096 Score=51.73 Aligned_cols=110 Identities=11% Similarity=-0.039 Sum_probs=65.3
Q ss_pred cCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 047934 221 AQKFDDAKRIFRKMQSNGI--APNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRERGVEKAQ 298 (344)
Q Consensus 221 ~g~~e~A~~vf~~M~~~gi--~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~~e~a~ 298 (344)
.|++++|+..|++..+.+. .-+...|..+-.+|.+.|++++|++.|++..+.. .-+...+..+-.++...|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 4666777777777665431 1234566677777777777777777777766542 124566666677777777777777
Q ss_pred HHHHHHHHC-CCcccHHHHHHHHhccCCCChHHH
Q 047934 299 SVIATLKEK-GFLVNDKAVREFLDKKAPFSSSVW 331 (344)
Q Consensus 299 ~l~~~M~~~-Gi~p~~~~~~~Ll~~yak~g~~~W 331 (344)
+.+....+. .-.++...|...+..|...-+..|
T Consensus 82 ~~~~~al~~~p~~~~~~~~~~ai~~~~~~l~~~~ 115 (117)
T 3k9i_A 82 ELLLKIIAETSDDETIQSYKQAILFYADKLDETW 115 (117)
T ss_dssp HHHHHHHHHHCCCHHHHHTHHHHHHHTTCTTCCC
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHh
Confidence 777766543 233445555566666655444444
No 156
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.13 E-value=0.0097 Score=45.87 Aligned_cols=91 Identities=16% Similarity=0.134 Sum_probs=74.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHH
Q 047934 214 VVDGFCKAQKFDDAKRIFRKMQSNGIAPNA---FSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPN----VTTFVGLVD 286 (344)
Q Consensus 214 LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~---~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd----~~ty~~lL~ 286 (344)
+-..+...|++++|...|+...+..-. +. ..|..+-.+|.+.|++++|...|++..... |+ ...+..+-.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY--PTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC--CCCcccHHHHHHHHH
Confidence 445677899999999999999875321 22 477788889999999999999999988753 33 566777888
Q ss_pred HHHHcCCHHHHHHHHHHHHHC
Q 047934 287 GLCRERGVEKAQSVIATLKEK 307 (344)
Q Consensus 287 a~~~~G~~e~a~~l~~~M~~~ 307 (344)
++...|+.++|.+.++.+.+.
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 899999999999999998875
No 157
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=97.09 E-value=0.0089 Score=51.28 Aligned_cols=110 Identities=11% Similarity=0.096 Sum_probs=87.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHH----------------HHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 047934 180 LDGLCKDGLIQEAMKLFGLMREKGTIP-EVVIYTA----------------VVDGFCKAQKFDDAKRIFRKMQSNGIAPN 242 (344)
Q Consensus 180 i~~~~k~g~~~~A~~lf~~M~~~g~~p-d~~tyn~----------------LI~ay~k~g~~e~A~~vf~~M~~~gi~pd 242 (344)
-..+...|++++|...|+...+.. | +...|.. +-.+|.+.|++++|...|++..+.. +-+
T Consensus 11 g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~ 87 (208)
T 3urz_A 11 VSAAIEAGQNGQAVSYFRQTIALN--IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA-PNN 87 (208)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCC
Confidence 345678999999999999887652 2 3445555 8888999999999999999998763 226
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 047934 243 AFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRERG 293 (344)
Q Consensus 243 ~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~ 293 (344)
...|..+-.+|...|++++|+..|++..+.. +-+..+|..+-..|...|.
T Consensus 88 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~ 137 (208)
T 3urz_A 88 VDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAE 137 (208)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhH
Confidence 7899999999999999999999999998753 2256777777777765553
No 158
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.06 E-value=0.0096 Score=47.02 Aligned_cols=101 Identities=15% Similarity=0.137 Sum_probs=78.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC--CCCC----HHHHHHHHHH
Q 047934 179 MLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNG--IAPN----AFSYNLLIQG 252 (344)
Q Consensus 179 li~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~g--i~pd----~~tyn~LI~a 252 (344)
+=..|.+.|++++|++.|....+.. +-+..+|+.+-.+|.+.|++++|+..|++..+.. ...+ ..+|..+-.+
T Consensus 14 lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~ 92 (127)
T 4gcn_A 14 LGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNA 92 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHH
Confidence 4456788999999999999887753 3468889999999999999999999999876531 1112 2467777788
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 047934 253 LYKCNKLEEAVEYCIEMLEAGHSPNVTTFV 282 (344)
Q Consensus 253 y~k~g~~~~A~~lf~~M~~~gv~pd~~ty~ 282 (344)
|...|++++|++.|++.... .||..+..
T Consensus 93 ~~~~~~~~~A~~~~~kal~~--~~~~~~~~ 120 (127)
T 4gcn_A 93 FQKQNDLSLAVQWFHRSLSE--FRDPELVK 120 (127)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--SCCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhh--CcCHHHHH
Confidence 88999999999999987764 45655443
No 159
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.03 E-value=0.0037 Score=62.01 Aligned_cols=127 Identities=13% Similarity=0.092 Sum_probs=95.6
Q ss_pred HHHHHcCCHHHHHHHHHHHHHc---CCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-----CC-CCC-HHHH
Q 047934 181 DGLCKDGLIQEAMKLFGLMREK---GTIP----EVVIYTAVVDGFCKAQKFDDAKRIFRKMQSN-----GI-APN-AFSY 246 (344)
Q Consensus 181 ~~~~k~g~~~~A~~lf~~M~~~---g~~p----d~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~-----gi-~pd-~~ty 246 (344)
..+-..|++++|+.++++..+. -+.+ ...+++.|..+|...|++++|+.++++..+- |- -|+ ..++
T Consensus 317 ~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l 396 (490)
T 3n71_A 317 DKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAV 396 (490)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 3455789999999999876543 1222 3578899999999999999999999887542 21 233 4678
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH-----cCC-CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 047934 247 NLLIQGLYKCNKLEEAVEYCIEMLE-----AGH-SPN-VTTFVGLVDGLCRERGVEKAQSVIATLKEK 307 (344)
Q Consensus 247 n~LI~ay~k~g~~~~A~~lf~~M~~-----~gv-~pd-~~ty~~lL~a~~~~G~~e~a~~l~~~M~~~ 307 (344)
+.|-..|...|++++|+.++++..+ .|- .|+ ..+...+-.++...+.+++|+.++..+++.
T Consensus 397 ~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 397 MRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998654 232 233 333455666667889999999999998764
No 160
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.03 E-value=0.0044 Score=60.92 Aligned_cols=119 Identities=10% Similarity=-0.105 Sum_probs=58.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH
Q 047934 148 NRNEPISEPPQEADEIFKKMKETGLI--PNAVAMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFD 225 (344)
Q Consensus 148 ~~~~~~sg~~~~A~~lf~~M~~~gi~--p~~~tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e 225 (344)
...++..|++++|++.|++..+..-. ..+..+-.+|.+.|++++|++.|+...+.. +-+..+|..+-.+|...|+++
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 34455567777777777766554211 011234555556666666666666655542 224555555566666666666
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHH--HHHcCCHHHHHHHHHH
Q 047934 226 DAKRIFRKMQSNGIAPNAFSYNLLIQG--LYKCNKLEEAVEYCIE 268 (344)
Q Consensus 226 ~A~~vf~~M~~~gi~pd~~tyn~LI~a--y~k~g~~~~A~~lf~~ 268 (344)
+|++.|++..+..-. +...+..+-.+ +.+.|++++|++++++
T Consensus 92 eA~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 92 AALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 666666655543111 12223323222 5555555555555443
No 161
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=97.02 E-value=0.014 Score=50.52 Aligned_cols=149 Identities=9% Similarity=0.065 Sum_probs=103.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCC-C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CCH-HHHHHHHHHHH
Q 047934 179 MLDGLCKDGLIQEAMKLFGLMREKGTI-P-EVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIA-PNA-FSYNLLIQGLY 254 (344)
Q Consensus 179 li~~~~k~g~~~~A~~lf~~M~~~g~~-p-d~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~-pd~-~tyn~LI~ay~ 254 (344)
+-..+.+.|++++|...|+.+.+..-. + ....+..+..+|.+.|++++|...|+++.+..-. +.. ..|-.+-.+|.
T Consensus 10 ~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~ 89 (225)
T 2yhc_A 10 TAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNM 89 (225)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHH
Confidence 456688899999999999999875321 2 2467788889999999999999999999875322 221 23333333443
Q ss_pred H------------------cCCHHHHHHHHHHHHHcCCCCCHH-HH-----------------HHHHHHHHHcCCHHHHH
Q 047934 255 K------------------CNKLEEAVEYCIEMLEAGHSPNVT-TF-----------------VGLVDGLCRERGVEKAQ 298 (344)
Q Consensus 255 k------------------~g~~~~A~~lf~~M~~~gv~pd~~-ty-----------------~~lL~a~~~~G~~e~a~ 298 (344)
+ .|+.++|...|+++.+. .|+.. .+ ..+-..|.+.|++++|.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~ 167 (225)
T 2yhc_A 90 ALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVV 167 (225)
T ss_dssp HHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred hhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHH
Confidence 3 57899999999998875 23321 11 23445677899999999
Q ss_pred HHHHHHHHCC--CcccHHHHHHHHhccCCCChH
Q 047934 299 SVIATLKEKG--FLVNDKAVREFLDKKAPFSSS 329 (344)
Q Consensus 299 ~l~~~M~~~G--i~p~~~~~~~Ll~~yak~g~~ 329 (344)
..++.+.+.- -......+..+-..|.+.|..
T Consensus 168 ~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~ 200 (225)
T 2yhc_A 168 NRVEGMLRDYPDTQATRDALPLMENAYRQMQMN 200 (225)
T ss_dssp HHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCc
Confidence 9999988752 111234566677777777763
No 162
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=96.99 E-value=0.011 Score=46.30 Aligned_cols=94 Identities=10% Similarity=-0.028 Sum_probs=78.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 047934 212 TAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRE 291 (344)
Q Consensus 212 n~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~ 291 (344)
-.+-..+.+.|++++|...|+...+.. .-+...|..+-.+|.+.|++++|+..|++..+.. .-+...+..+-.++...
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 345567789999999999999998753 2268889999999999999999999999988763 22577888888999999
Q ss_pred CCHHHHHHHHHHHHHC
Q 047934 292 RGVEKAQSVIATLKEK 307 (344)
Q Consensus 292 G~~e~a~~l~~~M~~~ 307 (344)
|++++|...++...+.
T Consensus 99 g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 99 HNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999988753
No 163
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=96.92 E-value=0.012 Score=47.39 Aligned_cols=110 Identities=12% Similarity=-0.017 Sum_probs=58.6
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHH
Q 047934 156 PPQEADEIFKKMKETGLIPNAVAMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCK----AQKFDDAKRIF 231 (344)
Q Consensus 156 ~~~~A~~lf~~M~~~gi~p~~~tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k----~g~~e~A~~vf 231 (344)
++++|++.|++..+.|.. ... |=..|...+.+++|+++|+...+.| +...+..|=.+|.. .++.++|...|
T Consensus 10 d~~~A~~~~~~aa~~g~~-~a~-lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~ 84 (138)
T 1klx_A 10 DLKKAIQYYVKACELNEM-FGC-LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYY 84 (138)
T ss_dssp HHHHHHHHHHHHHHTTCT-THH-HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCH-hhh-HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHH
Confidence 456666666666665533 222 3333333445555666666555543 44555555555555 55566666666
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcC
Q 047934 232 RKMQSNGIAPNAFSYNLLIQGLYK----CNKLEEAVEYCIEMLEAG 273 (344)
Q Consensus 232 ~~M~~~gi~pd~~tyn~LI~ay~k----~g~~~~A~~lf~~M~~~g 273 (344)
++..+.| +...+..|-..|.. .++.++|.+.|++-.+.|
T Consensus 85 ~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 85 SKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 6555544 44555555555555 455555555555555544
No 164
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=96.88 E-value=0.039 Score=44.27 Aligned_cols=113 Identities=9% Similarity=-0.080 Sum_probs=95.6
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHH
Q 047934 187 GLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYK----CNKLEEA 262 (344)
Q Consensus 187 g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k----~g~~~~A 262 (344)
++.++|++.|+...+.|. ++.. |=.+|...+.+++|.+.|++..+.| +...+..|=..|.. .++.++|
T Consensus 9 ~d~~~A~~~~~~aa~~g~-~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNE-MFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTTC-TTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCCC-Hhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 467899999999988873 3333 5566667778999999999998886 78888888888988 8999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCc
Q 047934 263 VEYCIEMLEAGHSPNVTTFVGLVDGLCR----ERGVEKAQSVIATLKEKGFL 310 (344)
Q Consensus 263 ~~lf~~M~~~gv~pd~~ty~~lL~a~~~----~G~~e~a~~l~~~M~~~Gi~ 310 (344)
++.|++-.+.| +...+..|-..|.. .++.++|.+.+....+.|..
T Consensus 81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~ 129 (138)
T 1klx_A 81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSE 129 (138)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCCH
Confidence 99999999886 67788888888888 89999999999999988765
No 165
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=96.79 E-value=0.0086 Score=47.13 Aligned_cols=120 Identities=9% Similarity=-0.035 Sum_probs=87.8
Q ss_pred CCCCCHHHHHHHHHHHHHCCC-CCC-------HHHHHHHHHHcCCHHHHHHHHHHHHHcC----CCC-CHHHHHHHHHHH
Q 047934 152 PISEPPQEADEIFKKMKETGL-IPN-------AVAMLDGLCKDGLIQEAMKLFGLMREKG----TIP-EVVIYTAVVDGF 218 (344)
Q Consensus 152 ~~sg~~~~A~~lf~~M~~~gi-~p~-------~~tli~~~~k~g~~~~A~~lf~~M~~~g----~~p-d~~tyn~LI~ay 218 (344)
...|++++|.+.|++..+..- ..+ +..+-..|...|++++|.++|+...+.. -.+ ...++..+-..|
T Consensus 20 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~ 99 (164)
T 3ro3_A 20 YLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTY 99 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 446889999999988765311 111 2246778889999999999999876431 111 145778888899
Q ss_pred HHcCCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 047934 219 CKAQKFDDAKRIFRKMQSN----GIA-PNAFSYNLLIQGLYKCNKLEEAVEYCIEMLE 271 (344)
Q Consensus 219 ~k~g~~e~A~~vf~~M~~~----gi~-pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~ 271 (344)
...|++++|...+++..+. +.. ....++..+-..|...|++++|.+.+++..+
T Consensus 100 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 100 TLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 9999999999999887542 211 1145677888899999999999999988664
No 166
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=96.76 E-value=0.031 Score=50.43 Aligned_cols=93 Identities=16% Similarity=0.050 Sum_probs=77.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 047934 178 AMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCN 257 (344)
Q Consensus 178 tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g 257 (344)
.+-..+.+.|++++|...|....+.. +-+...|..+-.+|.+.|++++|...++...+.. .-+...|..+-.+|...|
T Consensus 9 ~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g 86 (281)
T 2c2l_A 9 EQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQLEME 86 (281)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 35677888999999999999887753 2378889999999999999999999999887652 235778888999999999
Q ss_pred CHHHHHHHHHHHHHc
Q 047934 258 KLEEAVEYCIEMLEA 272 (344)
Q Consensus 258 ~~~~A~~lf~~M~~~ 272 (344)
++++|...|++..+.
T Consensus 87 ~~~~A~~~~~~al~l 101 (281)
T 2c2l_A 87 SYDEAIANLQRAYSL 101 (281)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999987764
No 167
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=96.70 E-value=0.0091 Score=58.65 Aligned_cols=119 Identities=10% Similarity=0.063 Sum_probs=91.5
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 047934 182 GLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEE 261 (344)
Q Consensus 182 ~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~ 261 (344)
.|.+.|++++|.+.|++..+.. +-+..+|..+-.+|.+.|++++|...|++..+.. .-+...|..+-.+|.+.|++++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 4557899999999999888762 3368999999999999999999999999998863 2367889999999999999999
Q ss_pred HHHHHHHHHHcC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 047934 262 AVEYCIEMLEAG-HSPNVTTFVGLVDGLCRERGVEKAQSVIA 302 (344)
Q Consensus 262 A~~lf~~M~~~g-v~pd~~ty~~lL~a~~~~G~~e~a~~l~~ 302 (344)
|++.|++..+.. -.++.......+..+.+.|++++|.++++
T Consensus 93 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 93 ALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999988753 12333333333444788899999999888
No 168
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=96.67 E-value=0.028 Score=52.29 Aligned_cols=119 Identities=17% Similarity=0.047 Sum_probs=93.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 047934 207 EVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPN--------------AFSYNLLIQGLYKCNKLEEAVEYCIEMLEA 272 (344)
Q Consensus 207 d~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd--------------~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~ 272 (344)
+...+..+-..|.+.|++++|...|++..+..-... ...|..+-.+|.+.|++++|+..|++..+.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 456777888889999999999999999887532221 589999999999999999999999998876
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCcccHHHHHHHHhccCCCC
Q 047934 273 GHSPNVTTFVGLVDGLCRERGVEKAQSVIATLKEKGFLVNDKAVREFLDKKAPFS 327 (344)
Q Consensus 273 gv~pd~~ty~~lL~a~~~~G~~e~a~~l~~~M~~~Gi~p~~~~~~~Ll~~yak~g 327 (344)
. .-+...|..+-.+|...|++++|...|+...+..= -+...+..+-..+.+.|
T Consensus 226 ~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~a~~~l~~~~~~~~ 278 (336)
T 1p5q_A 226 D-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYP-NNKAAKTQLAVCQQRIR 278 (336)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHHH
T ss_pred C-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHH
Confidence 3 33688899999999999999999999999887531 13344555544444433
No 169
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=96.66 E-value=0.02 Score=59.06 Aligned_cols=172 Identities=12% Similarity=0.063 Sum_probs=119.6
Q ss_pred CCCHHHHH-HHHHHHHHCCCCCC---HHHHHHHHHHcCCHHHHHHHHHHHHHcC---------CCCC------------H
Q 047934 154 SEPPQEAD-EIFKKMKETGLIPN---AVAMLDGLCKDGLIQEAMKLFGLMREKG---------TIPE------------V 208 (344)
Q Consensus 154 sg~~~~A~-~lf~~M~~~gi~p~---~~tli~~~~k~g~~~~A~~lf~~M~~~g---------~~pd------------~ 208 (344)
.|+.++|. ++|++.... +..+ |..++...-+.|++++|.++|+.+.+.. -.|+ .
T Consensus 356 ~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~ 434 (679)
T 4e6h_A 356 KNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLT 434 (679)
T ss_dssp HSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchH
Confidence 46677886 999887752 2222 2245667778899999999999887641 0132 3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHC-C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 047934 209 VIYTAVVDGFCKAQKFDDAKRIFRKMQSN-G-IAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVD 286 (344)
Q Consensus 209 ~tyn~LI~ay~k~g~~e~A~~vf~~M~~~-g-i~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~ 286 (344)
.+|...+....+.|.++.|+.+|....+. + ..+.+....+.+.-.+ .++.+.|.++|+...+. ..-+...+...+.
T Consensus 435 ~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~-~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~ 512 (679)
T 4e6h_A 435 YVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHI-SKDTKTACKVLELGLKY-FATDGEYINKYLD 512 (679)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTT-TSCCHHHHHHHHHHHHH-HTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHH-CCCchHHHHHHHH
Confidence 46888888888899999999999999876 2 2233444444444222 34589999999998876 3335666678888
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCcc--cHHHHHHHHhccCCCCh
Q 047934 287 GLCRERGVEKAQSVIATLKEKGFLV--NDKAVREFLDKKAPFSS 328 (344)
Q Consensus 287 a~~~~G~~e~a~~l~~~M~~~Gi~p--~~~~~~~Ll~~yak~g~ 328 (344)
.....|+.+.|+.+|+......-.+ ....|..+++.-.+.|.
T Consensus 513 fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~ 556 (679)
T 4e6h_A 513 FLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGS 556 (679)
T ss_dssp HHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCC
T ss_pred HHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCC
Confidence 8888999999999999988765422 34566666665445553
No 170
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=96.66 E-value=0.028 Score=53.21 Aligned_cols=121 Identities=9% Similarity=-0.029 Sum_probs=89.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc---------------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 047934 176 AVAMLDGLCKDGLIQEAMKLFGLMREK---------------GTIPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIA 240 (344)
Q Consensus 176 ~~tli~~~~k~g~~~~A~~lf~~M~~~---------------g~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~ 240 (344)
+..+-..|.+.|++++|++.|+...+. --+-+..+|..+-.+|.+.|++++|+..+++..+.. .
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p 304 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID-P 304 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-T
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-c
Confidence 334667788999999999999987651 111245778888888899999999999999888753 2
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 047934 241 PNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRERGVEKAQ 298 (344)
Q Consensus 241 pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~~e~a~ 298 (344)
-+...|..+-.+|.+.|++++|++.|++..+.. .-+...+..+-..+...++.+++.
T Consensus 305 ~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 305 SNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 257788888889999999999999999887652 124556666666666666665554
No 171
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=96.65 E-value=0.033 Score=54.15 Aligned_cols=127 Identities=13% Similarity=0.088 Sum_probs=97.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 047934 178 AMLDGLCKDGLIQEAMKLFGLMREKGTIPE--------------VVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNA 243 (344)
Q Consensus 178 tli~~~~k~g~~~~A~~lf~~M~~~g~~pd--------------~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~ 243 (344)
.+-..|.+.|++++|...|....+..-... ..+|..+-.+|.+.|++++|+..|++..+.. .-+.
T Consensus 273 ~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~ 351 (457)
T 1kt0_A 273 EKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD-SANE 351 (457)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccH
Confidence 456778899999999999998876421111 6889999999999999999999999998753 2367
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHC
Q 047934 244 FSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSP-NVTTFVGLVDGLCRERGVEKAQ-SVIATLKEK 307 (344)
Q Consensus 244 ~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~p-d~~ty~~lL~a~~~~G~~e~a~-~l~~~M~~~ 307 (344)
..|..+-.+|...|++++|+..|++..+. .| +...+..+-.++.+.++.+++. .++..|...
T Consensus 352 ~a~~~~g~a~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~k 415 (457)
T 1kt0_A 352 KGLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQNKAARLQISMCQKKAKEHNERDRRIYANMFKK 415 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTT--C----CHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 88999999999999999999999998765 33 4556777778888888887765 455555443
No 172
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=96.59 E-value=0.012 Score=60.53 Aligned_cols=141 Identities=8% Similarity=-0.069 Sum_probs=110.6
Q ss_pred HHcCCHHHHHHHHHHHHH-------cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 047934 184 CKDGLIQEAMKLFGLMRE-------KGTIPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKC 256 (344)
Q Consensus 184 ~k~g~~~~A~~lf~~M~~-------~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~ 256 (344)
...|++++|++.|+...+ ...+.+...+..+-.+|...|++++|...|++..+.. .-+...|..+-.+|.+.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 788999999999999871 1224467888889999999999999999999998752 22678899999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCcccHHHHHHHHhccCCCCh
Q 047934 257 NKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRERGVEKAQSVIATLKEKGFLVNDKAVREFLDKKAPFSS 328 (344)
Q Consensus 257 g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~~e~a~~l~~~M~~~Gi~p~~~~~~~Ll~~yak~g~ 328 (344)
|++++|++.|++..+.. .-+...|..+-.+|...|++++ .+.++...+..=. +...+..+-..|.+.|.
T Consensus 481 g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~ 549 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGD 549 (681)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCC
Confidence 99999999999988753 2256778888889999999999 9999988875322 34455555555555554
No 173
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=96.57 E-value=0.024 Score=52.11 Aligned_cols=117 Identities=9% Similarity=-0.110 Sum_probs=89.2
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHcCCHHHHH
Q 047934 154 SEPPQEADEIFKKMKETGLIPNA---VAMLDGLCKDGLIQEAMKLFGLMREKGTIP--EVVIYTAVVDGFCKAQKFDDAK 228 (344)
Q Consensus 154 sg~~~~A~~lf~~M~~~gi~p~~---~tli~~~~k~g~~~~A~~lf~~M~~~g~~p--d~~tyn~LI~ay~k~g~~e~A~ 228 (344)
.|++++|.++|+.+...+ |.. ..+-..|.+.+++++|+..|....... .| ....+..|=.++...|++++|+
T Consensus 115 ~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~~LG~~~eAl 191 (282)
T 4f3v_A 115 QGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAANLALFTEAE 191 (282)
T ss_dssp HTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHHHCCCHHHHH
Confidence 678999999999887644 433 245567889999999999998443321 11 1236777788899999999999
Q ss_pred HHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 047934 229 RIFRKMQSNGIAPN--AFSYNLLIQGLYKCNKLEEAVEYCIEMLEAG 273 (344)
Q Consensus 229 ~vf~~M~~~gi~pd--~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~g 273 (344)
..|++.......|. ...+..+-.++.+.|+.++|..+|+++....
T Consensus 192 ~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 192 RRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 99999875444354 3466677778889999999999999998863
No 174
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=96.54 E-value=0.034 Score=45.10 Aligned_cols=92 Identities=13% Similarity=0.090 Sum_probs=44.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHc-------CC----------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 047934 179 MLDGLCKDGLIQEAMKLFGLMREK-------GT----------IPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAP 241 (344)
Q Consensus 179 li~~~~k~g~~~~A~~lf~~M~~~-------g~----------~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~p 241 (344)
.=..+.+.|++++|+..|....+. .- +-+..+|..+-.+|.+.|++++|...++...+.. .-
T Consensus 17 ~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~ 95 (162)
T 3rkv_A 17 KGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKRE-ET 95 (162)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-Cc
Confidence 445566667777777777665442 00 0112344444444555555555555555444431 11
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 047934 242 NAFSYNLLIQGLYKCNKLEEAVEYCIEMLE 271 (344)
Q Consensus 242 d~~tyn~LI~ay~k~g~~~~A~~lf~~M~~ 271 (344)
+...|..+-.+|...|++++|...|++...
T Consensus 96 ~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 96 NEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 344444444455555555555555544443
No 175
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=96.53 E-value=0.081 Score=42.80 Aligned_cols=89 Identities=16% Similarity=0.159 Sum_probs=58.4
Q ss_pred HHHcCCHHHHHHHHHHHHHC-------C----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH
Q 047934 218 FCKAQKFDDAKRIFRKMQSN-------G----------IAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTT 280 (344)
Q Consensus 218 y~k~g~~e~A~~vf~~M~~~-------g----------i~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~t 280 (344)
+.+.|++++|...|...... . -.-+...|..+-.+|.+.|++++|+..+++..... .-+...
T Consensus 21 ~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a 99 (162)
T 3rkv_A 21 LFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKA 99 (162)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHH
Confidence 34667777777777665442 0 01123567777777777777777777777776642 224666
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 047934 281 FVGLVDGLCRERGVEKAQSVIATLKEK 307 (344)
Q Consensus 281 y~~lL~a~~~~G~~e~a~~l~~~M~~~ 307 (344)
|..+-.+|...|++++|...+....+.
T Consensus 100 ~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 100 LFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 777777777777777777777776654
No 176
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=96.45 E-value=0.055 Score=48.75 Aligned_cols=86 Identities=10% Similarity=-0.077 Sum_probs=68.8
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCC-CC-HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 047934 151 EPISEPPQEADEIFKKMKETGLI-PN-AVAMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAK 228 (344)
Q Consensus 151 ~~~sg~~~~A~~lf~~M~~~gi~-p~-~~tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~ 228 (344)
++..|++++|+..|++..+..-. +. +..+-..|.+.|++++|.+.++...+.. +-+...+..+-.+|...|++++|.
T Consensus 14 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~ 92 (281)
T 2c2l_A 14 LFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQLEMESYDEAI 92 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 44578999999999998875321 11 2346778889999999999999887652 346788999999999999999999
Q ss_pred HHHHHHHHC
Q 047934 229 RIFRKMQSN 237 (344)
Q Consensus 229 ~vf~~M~~~ 237 (344)
..|+...+.
T Consensus 93 ~~~~~al~l 101 (281)
T 2c2l_A 93 ANLQRAYSL 101 (281)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999988664
No 177
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=96.39 E-value=0.069 Score=50.72 Aligned_cols=152 Identities=11% Similarity=0.002 Sum_probs=95.7
Q ss_pred CCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc----------
Q 047934 154 SEPPQEADEIFKKMKETGLIP--NAVAMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKA---------- 221 (344)
Q Consensus 154 sg~~~~A~~lf~~M~~~gi~p--~~~tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~---------- 221 (344)
.+++++|.+++++.....-.. .+..+-..|...|++++|.+.|+...+.. +-+..++..+-..|...
T Consensus 226 ~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~y~~~~~~~~~~~~~ 304 (472)
T 4g1t_A 226 GEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIGCCYRAKVFQVMNLREN 304 (472)
T ss_dssp ----CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHC---
T ss_pred hhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 567888888888776643221 12346778888899999999998877653 22455665555444321
Q ss_pred ---------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHH-HHH
Q 047934 222 ---------QKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVT--TFVGLVD-GLC 289 (344)
Q Consensus 222 ---------g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~--ty~~lL~-a~~ 289 (344)
+..++|...|+...+.. ..+..+|..+-..|...|++++|++.|++.......+... .+..+.. ...
T Consensus 305 ~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~ 383 (472)
T 4g1t_A 305 GMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLY 383 (472)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Confidence 23456777777665542 2244567788888999999999999999888764333221 1111111 234
Q ss_pred HcCCHHHHHHHHHHHHHC
Q 047934 290 RERGVEKAQSVIATLKEK 307 (344)
Q Consensus 290 ~~G~~e~a~~l~~~M~~~ 307 (344)
..|+.++|.+.+.+..+.
T Consensus 384 ~~~~~~~Ai~~y~kal~i 401 (472)
T 4g1t_A 384 QMKCEDKAIHHFIEGVKI 401 (472)
T ss_dssp TSSCHHHHHHHHHHHHHS
T ss_pred HCCCHHHHHHHHHHHHhc
Confidence 578899999988887764
No 178
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=96.31 E-value=0.14 Score=49.43 Aligned_cols=80 Identities=14% Similarity=0.033 Sum_probs=34.7
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----c
Q 047934 186 DGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQ-----KFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYK----C 256 (344)
Q Consensus 186 ~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g-----~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k----~ 256 (344)
.++.++|+++|+...+.| +...+..|=.+|. .| ++++|...|++.. .| +...+..|-..|.. .
T Consensus 264 ~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~ 335 (452)
T 3e4b_A 264 LGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGK 335 (452)
T ss_dssp GCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSS
T ss_pred CCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCC
Confidence 445555555555444443 3344444444443 22 4455555554433 21 33344443333333 1
Q ss_pred CCHHHHHHHHHHHHHcC
Q 047934 257 NKLEEAVEYCIEMLEAG 273 (344)
Q Consensus 257 g~~~~A~~lf~~M~~~g 273 (344)
.+.++|.+.|++-.+.|
T Consensus 336 ~d~~~A~~~~~~Aa~~g 352 (452)
T 3e4b_A 336 VYPQKALDHLLTAARNG 352 (452)
T ss_dssp CCHHHHHHHHHHHHTTT
T ss_pred cCHHHHHHHHHHHHhhC
Confidence 24555555555544443
No 179
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=96.29 E-value=0.019 Score=56.94 Aligned_cols=122 Identities=11% Similarity=-0.059 Sum_probs=90.5
Q ss_pred CCCCCCHHHHHHHHHHHHHCC---CCC---CH----HHHHHHHHHcCCHHHHHHHHHHHHHc---CCCC----CHHHHHH
Q 047934 151 EPISEPPQEADEIFKKMKETG---LIP---NA----VAMLDGLCKDGLIQEAMKLFGLMREK---GTIP----EVVIYTA 213 (344)
Q Consensus 151 ~~~sg~~~~A~~lf~~M~~~g---i~p---~~----~tli~~~~k~g~~~~A~~lf~~M~~~---g~~p----d~~tyn~ 213 (344)
+...|++++|+.++++..+.. +-+ +. +.|...|...|++++|..++++..+- -+.+ ...+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 345789999999998766531 222 22 24788899999999999999876532 1222 3578899
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH-----CCCC-CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 047934 214 VVDGFCKAQKFDDAKRIFRKMQS-----NGIA-PN-AFSYNLLIQGLYKCNKLEEAVEYCIEMLEA 272 (344)
Q Consensus 214 LI~ay~k~g~~e~A~~vf~~M~~-----~gi~-pd-~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~ 272 (344)
|-..|...|++++|+.++++..+ .|-. |+ ..+.+.|-.++...+.+++|..++.++++.
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988654 2322 22 345667778888899999999999998763
No 180
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=96.29 E-value=0.18 Score=48.68 Aligned_cols=143 Identities=12% Similarity=0.008 Sum_probs=98.3
Q ss_pred CHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHc----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-H--HHcCCHHH
Q 047934 156 PPQEADEIFKKMKETGLIPNA--VAMLDGLCKD----GLIQEAMKLFGLMREKGTIPEVVIYTAVVDG-F--CKAQKFDD 226 (344)
Q Consensus 156 ~~~~A~~lf~~M~~~gi~p~~--~tli~~~~k~----g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~a-y--~k~g~~e~ 226 (344)
+.++|++.|+...+.|-.... ..|-..|... ++.++|+++|+... .| +...+..|-.+ | ...++.++
T Consensus 194 ~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~ 269 (452)
T 3e4b_A 194 QQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQ 269 (452)
T ss_dssp HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHH
Confidence 788888888888887755322 2233333222 58888888888776 33 45555555555 3 45788999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHHHH
Q 047934 227 AKRIFRKMQSNGIAPNAFSYNLLIQGLYKCN-----KLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCR----ERGVEKA 297 (344)
Q Consensus 227 A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g-----~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~----~G~~e~a 297 (344)
|...|++..+.| +...+..|-..|. .| +.++|++.|++.. .| +...+..|-..|.. ..+.++|
T Consensus 270 A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A 341 (452)
T 3e4b_A 270 MMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKA 341 (452)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHH
Confidence 999999888876 6777777777776 45 8889998888766 33 55666656555554 3388888
Q ss_pred HHHHHHHHHCCCc
Q 047934 298 QSVIATLKEKGFL 310 (344)
Q Consensus 298 ~~l~~~M~~~Gi~ 310 (344)
.+.+....+.|..
T Consensus 342 ~~~~~~Aa~~g~~ 354 (452)
T 3e4b_A 342 LDHLLTAARNGQN 354 (452)
T ss_dssp HHHHHHHHTTTCT
T ss_pred HHHHHHHHhhChH
Confidence 8888887776543
No 181
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=96.03 E-value=0.14 Score=47.42 Aligned_cols=150 Identities=10% Similarity=0.071 Sum_probs=112.8
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHcCCHH--HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC------
Q 047934 155 EPPQEADEIFKKMKETGLIPNAVA---MLDGLCKDGLIQ--EAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQK------ 223 (344)
Q Consensus 155 g~~~~A~~lf~~M~~~gi~p~~~t---li~~~~k~g~~~--~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~------ 223 (344)
+++++++++++.+.+.+-+ +..+ ---.+.+.|.++ +++++++.|.+.... |-..|+---..+...+.
T Consensus 124 ~~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~ 201 (306)
T 3dra_A 124 FDPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNT 201 (306)
T ss_dssp CCTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHH
T ss_pred CCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhh
Confidence 5689999999999987654 4432 233344567777 999999999987653 77888776666666666
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHcC--CCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 047934 224 FDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEE-AVEYCIEMLEAG--HSPNVTTFVGLVDGLCRERGVEKAQSV 300 (344)
Q Consensus 224 ~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~-A~~lf~~M~~~g--v~pd~~ty~~lL~a~~~~G~~e~a~~l 300 (344)
++++++.++.+...... |...|+.+-..+.+.|...+ +.+++.+....+ -..+...+..+...|.+.|+.++|.++
T Consensus 202 ~~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~ 280 (306)
T 3dra_A 202 IDEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTV 280 (306)
T ss_dssp HHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 88999999888876433 88899988888888887544 455666555432 134778889999999999999999999
Q ss_pred HHHHHHC
Q 047934 301 IATLKEK 307 (344)
Q Consensus 301 ~~~M~~~ 307 (344)
++.+.+.
T Consensus 281 ~~~l~~~ 287 (306)
T 3dra_A 281 YDLLKSK 287 (306)
T ss_dssp HHHHHHT
T ss_pred HHHHHhc
Confidence 9998763
No 182
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=95.97 E-value=0.072 Score=40.38 Aligned_cols=79 Identities=13% Similarity=0.114 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 047934 191 EAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEML 270 (344)
Q Consensus 191 ~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~ 270 (344)
+|++.|+...+.. +-+...+..+-..|...|++++|...|++..+.. .-+...|..+-.+|.+.|++++|...|++..
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4566676665542 3366777778888888888888888888877653 2246677777888888888888888887765
Q ss_pred H
Q 047934 271 E 271 (344)
Q Consensus 271 ~ 271 (344)
+
T Consensus 81 ~ 81 (115)
T 2kat_A 81 A 81 (115)
T ss_dssp H
T ss_pred H
Confidence 4
No 183
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=95.93 E-value=0.034 Score=41.28 Aligned_cols=65 Identities=14% Similarity=0.219 Sum_probs=46.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 047934 207 EVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEA 272 (344)
Q Consensus 207 d~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~ 272 (344)
+...+..+-..+...|++++|...|++..+.. ..+...|..+-.+|.+.|++++|++.|++..+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 34556666777777788888888887776642 225667777777888888888888888777654
No 184
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=95.92 E-value=0.085 Score=50.08 Aligned_cols=123 Identities=15% Similarity=-0.036 Sum_probs=72.1
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc----------
Q 047934 187 GLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKC---------- 256 (344)
Q Consensus 187 g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~---------- 256 (344)
++.++|.++++...... +.+..++..+-..|...|++++|...|++..+.. +-+..+|..+-.+|...
T Consensus 227 ~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~y~~~~~~~~~~~~~ 304 (472)
T 4g1t_A 227 EEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIGCCYRAKVFQVMNLREN 304 (472)
T ss_dssp ---CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHC---
T ss_pred hHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 45556666666555432 2355666667777777777777777777665542 11344454444443221
Q ss_pred ---------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCccc
Q 047934 257 ---------NKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRERGVEKAQSVIATLKEKGFLVN 312 (344)
Q Consensus 257 ---------g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~~e~a~~l~~~M~~~Gi~p~ 312 (344)
+..+.|...|++..+.. ..+..++..+-..|...|++++|.+.|+...+....+.
T Consensus 305 ~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~ 368 (472)
T 4g1t_A 305 GMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPV 368 (472)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCCh
Confidence 12345555555554432 12334566677888899999999999999988765543
No 185
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=95.91 E-value=0.15 Score=36.16 Aligned_cols=63 Identities=24% Similarity=0.346 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 047934 209 VIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEA 272 (344)
Q Consensus 209 ~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~ 272 (344)
..+..+-..|...|++++|...|++..+.. .-+...|..+-.+|.+.|++++|.+.|++..+.
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 445555566666666777776666665532 124556666666666777777777776666554
No 186
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=95.87 E-value=0.12 Score=39.14 Aligned_cols=62 Identities=10% Similarity=-0.043 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 047934 243 AFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRERGVEKAQSVIATLK 305 (344)
Q Consensus 243 ~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~~e~a~~l~~~M~ 305 (344)
...|..+-..|...|++++|++.|++..... .-+...|..+-.+|...|+.++|...++...
T Consensus 19 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 19 MLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444444444444444444444444444321 1123344444444444444444444444443
No 187
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=95.86 E-value=0.41 Score=39.94 Aligned_cols=61 Identities=11% Similarity=-0.024 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCC-HHHH----HHHHHHHHHcCCHHHHHHHHHHHH
Q 047934 245 SYNLLIQGLYKCNKLEEAVEYCIEMLEA-----GHSPN-VTTF----VGLVDGLCRERGVEKAQSVIATLK 305 (344)
Q Consensus 245 tyn~LI~ay~k~g~~~~A~~lf~~M~~~-----gv~pd-~~ty----~~lL~a~~~~G~~e~a~~l~~~M~ 305 (344)
.|+.+-.++.+.|++++|+..+++..+. .+.|+ ...| ...-.++...|++++|.+.|+...
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAl 129 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 129 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHH
Confidence 5666666666666666666666655542 22343 3344 455555666666666666666554
No 188
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=95.76 E-value=0.14 Score=48.45 Aligned_cols=98 Identities=16% Similarity=0.168 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHC--------------CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 047934 209 VIYTAVVDGFCKAQKFDDAKRIFRKMQSN--------------GIA-PNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAG 273 (344)
Q Consensus 209 ~tyn~LI~ay~k~g~~e~A~~vf~~M~~~--------------gi~-pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~g 273 (344)
..+..+-..|.+.|++++|...|++..+. ... -+...|..+-.+|.+.|++++|++.+++..+..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 303 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence 34566677888999999999999988751 011 245788899999999999999999999988753
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 047934 274 HSPNVTTFVGLVDGLCRERGVEKAQSVIATLKEK 307 (344)
Q Consensus 274 v~pd~~ty~~lL~a~~~~G~~e~a~~l~~~M~~~ 307 (344)
.-+...|..+-.+|...|++++|.+.++...+.
T Consensus 304 -p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 304 -PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 336 (370)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 235788888999999999999999999998875
No 189
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=95.75 E-value=0.13 Score=49.93 Aligned_cols=100 Identities=18% Similarity=0.085 Sum_probs=84.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 047934 207 EVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPN--------------AFSYNLLIQGLYKCNKLEEAVEYCIEMLEA 272 (344)
Q Consensus 207 d~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd--------------~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~ 272 (344)
....|..+-..|.+.|++++|...|++..+..-.-. ...|..+-.+|.+.|++++|+..|++..+.
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 346 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL 346 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 345677788889999999999999999877421111 588999999999999999999999998876
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 047934 273 GHSPNVTTFVGLVDGLCRERGVEKAQSVIATLKEK 307 (344)
Q Consensus 273 gv~pd~~ty~~lL~a~~~~G~~e~a~~l~~~M~~~ 307 (344)
. .-+...|..+-.+|...|++++|...|....+.
T Consensus 347 ~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l 380 (457)
T 1kt0_A 347 D-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 380 (457)
T ss_dssp S-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred C-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 3 236888889999999999999999999998875
No 190
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=95.59 E-value=0.15 Score=42.63 Aligned_cols=107 Identities=14% Similarity=0.112 Sum_probs=80.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCC-C-----CH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHC-----CCCCC
Q 047934 179 MLDGLCKDGLIQEAMKLFGLMREKGTI-P-----EV-----VIYTAVVDGFCKAQKFDDAKRIFRKMQSN-----GIAPN 242 (344)
Q Consensus 179 li~~~~k~g~~~~A~~lf~~M~~~g~~-p-----d~-----~tyn~LI~ay~k~g~~e~A~~vf~~M~~~-----gi~pd 242 (344)
.-..+.+.|++++|++.|+...+..-. | +. ..|..+-.++.+.|++++|+..|++..+. .+.|+
T Consensus 17 ~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd 96 (159)
T 2hr2_A 17 DAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQD 96 (159)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTST
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCc
Confidence 445677889999999999987754211 0 23 38999999999999999999999998773 22555
Q ss_pred -HHHH----HHHHHHHHHcCCHHHHHHHHHHHHH-----cCCCCCHHHHHHHH
Q 047934 243 -AFSY----NLLIQGLYKCNKLEEAVEYCIEMLE-----AGHSPNVTTFVGLV 285 (344)
Q Consensus 243 -~~ty----n~LI~ay~k~g~~~~A~~lf~~M~~-----~gv~pd~~ty~~lL 285 (344)
...| ...=.++...|++++|+..|++..+ .|+.+......-.+
T Consensus 97 ~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~~ 149 (159)
T 2hr2_A 97 EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVA 149 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHH
T ss_pred hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 4577 8888899999999999999998765 35655554444333
No 191
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=95.56 E-value=0.024 Score=52.82 Aligned_cols=123 Identities=11% Similarity=0.045 Sum_probs=61.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCH------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 047934 179 MLDGLCKDGLIQEAMKLFGLMREKGTIPEV------------------VIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIA 240 (344)
Q Consensus 179 li~~~~k~g~~~~A~~lf~~M~~~g~~pd~------------------~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~ 240 (344)
+-..+.+.|++++|...|....+. .|+. .+|..+-.+|.+.|++++|...|+...+.. .
T Consensus 185 ~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p 261 (338)
T 2if4_A 185 DGNSLFKEEKLEEAMQQYEMAIAY--MGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEE-E 261 (338)
T ss_dssp HHHHTCSSSCCHHHHHHHHHHHHH--SCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHC-T
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHH--hccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C
Confidence 444555667777777777765543 1332 266777777778888888888887776642 2
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHH-HHcCCHHHHHHHHHHHHH
Q 047934 241 PNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNV-TTFVGLVDGL-CRERGVEKAQSVIATLKE 306 (344)
Q Consensus 241 pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~-~ty~~lL~a~-~~~G~~e~a~~l~~~M~~ 306 (344)
-+...|..+-.+|...|++++|...|++..+. .|+. ..+..+.... ...+..+++..++..|..
T Consensus 262 ~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~ 327 (338)
T 2if4_A 262 KNPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALAEQEKALYQKQKEMYKGIFK 327 (338)
T ss_dssp TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------------------
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 25667777777888888888888887776543 3332 2222222221 223455566666666543
No 192
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.48 E-value=0.27 Score=45.96 Aligned_cols=157 Identities=8% Similarity=-0.018 Sum_probs=108.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHC-CCCCCHH------HHHHHH-HHcCCHHHHHHHHHHHHH----cCCCC-CHHHHHHHHH
Q 047934 150 NEPISEPPQEADEIFKKMKET-GLIPNAV------AMLDGL-CKDGLIQEAMKLFGLMRE----KGTIP-EVVIYTAVVD 216 (344)
Q Consensus 150 ~~~~sg~~~~A~~lf~~M~~~-gi~p~~~------tli~~~-~k~g~~~~A~~lf~~M~~----~g~~p-d~~tyn~LI~ 216 (344)
.+...|++++|.+++..+... +-.+... .++..+ ...|..++|.+++..... .+..+ -..++..|..
T Consensus 64 ~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~ 143 (434)
T 4b4t_Q 64 LYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLAT 143 (434)
T ss_dssp HHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 344578899999999987652 1122221 122222 235789999999887653 23222 3567888999
Q ss_pred HHHHcCCHHHHHHHHHHHHHC--CC--CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCC----HHHHHHHH
Q 047934 217 GFCKAQKFDDAKRIFRKMQSN--GI--AP-NAFSYNLLIQGLYKCNKLEEAVEYCIEMLEA--GHSPN----VTTFVGLV 285 (344)
Q Consensus 217 ay~k~g~~e~A~~vf~~M~~~--gi--~p-d~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~--gv~pd----~~ty~~lL 285 (344)
.|...|++++|..+++.+... +. .+ .+.+|..++..|...|++++|..++++.... .+..+ ...+..+.
T Consensus 144 ~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g 223 (434)
T 4b4t_Q 144 LHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSG 223 (434)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred HHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHH
Confidence 999999999999999987653 11 11 2467899999999999999999999886642 12212 23455666
Q ss_pred HHHHHcCCHHHHHHHHHHHHH
Q 047934 286 DGLCRERGVEKAQSVIATLKE 306 (344)
Q Consensus 286 ~a~~~~G~~e~a~~l~~~M~~ 306 (344)
..+...|++++|...+.+..+
T Consensus 224 ~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 224 ILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHH
Confidence 667778999999887776653
No 193
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=95.32 E-value=0.11 Score=50.49 Aligned_cols=91 Identities=5% Similarity=-0.025 Sum_probs=56.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHc--C-CCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-----C-CCCC-HHH
Q 047934 180 LDGLCKDGLIQEAMKLFGLMREK--G-TIP----EVVIYTAVVDGFCKAQKFDDAKRIFRKMQSN-----G-IAPN-AFS 245 (344)
Q Consensus 180 i~~~~k~g~~~~A~~lf~~M~~~--g-~~p----d~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~-----g-i~pd-~~t 245 (344)
+..+.+.|++++|+++++...+. . +.+ ...+++.|..+|...|++++|+.++++..+- | --|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 44555667777777777766543 1 222 2456677777777777777777777765431 2 1122 345
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 047934 246 YNLLIQGLYKCNKLEEAVEYCIEML 270 (344)
Q Consensus 246 yn~LI~ay~k~g~~~~A~~lf~~M~ 270 (344)
|+.|-..|...|++++|+.++++..
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 6677777777777777777776644
No 194
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=95.31 E-value=0.11 Score=38.66 Aligned_cols=64 Identities=13% Similarity=0.132 Sum_probs=44.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 047934 207 EVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLE 271 (344)
Q Consensus 207 d~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~ 271 (344)
+..++..+-.+|...|++++|...|++..+..-. +...|..+-.+|.+.|++++|.+.|++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4566667777777777777777777777664321 455677777777777777777777776543
No 195
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=95.12 E-value=0.42 Score=33.66 Aligned_cols=77 Identities=17% Similarity=0.158 Sum_probs=59.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 047934 178 AMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKC 256 (344)
Q Consensus 178 tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~ 256 (344)
.+-..+...|++++|...|+...+.. +-+..++..+-.+|.+.|++++|...|++..+.. .-+...+..+-.++.+.
T Consensus 14 ~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~ 90 (91)
T 1na3_A 14 NLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQKQ 90 (91)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhc
Confidence 35667888999999999999887753 3367888899999999999999999999987753 22456666665555443
No 196
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=95.11 E-value=0.023 Score=42.31 Aligned_cols=83 Identities=14% Similarity=0.103 Sum_probs=60.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-------HHHHHHHH
Q 047934 178 AMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPN-------AFSYNLLI 250 (344)
Q Consensus 178 tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd-------~~tyn~LI 250 (344)
.+-..+...|++++|.+.|+...+.. +.+..+|..+-.+|.+.|++++|...|++..+. .|+ ...+..+-
T Consensus 9 ~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~ 85 (111)
T 2l6j_A 9 EQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY--TSTAEHVAIRSKLQYRLE 85 (111)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CSSTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCccHHHHHHHHHHHHH
Confidence 45567788999999999999887753 347788899999999999999999999998875 344 33444444
Q ss_pred HHHHHcCCHHHHH
Q 047934 251 QGLYKCNKLEEAV 263 (344)
Q Consensus 251 ~ay~k~g~~~~A~ 263 (344)
.++...|..++|.
T Consensus 86 ~~~~~~~~~~~a~ 98 (111)
T 2l6j_A 86 LAQGAVGSVQIPV 98 (111)
T ss_dssp HHHHHHHCCCCCS
T ss_pred HHHHHHHhHhhhH
Confidence 4444444444333
No 197
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=95.05 E-value=0.17 Score=37.65 Aligned_cols=65 Identities=22% Similarity=0.142 Sum_probs=56.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 047934 242 NAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRERGVEKAQSVIATLKEK 307 (344)
Q Consensus 242 d~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~~e~a~~l~~~M~~~ 307 (344)
+...|..+-.+|.+.|++++|++.|++..+..- -+...|..+-.+|...|++++|.+.++...+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDP-DYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 677888999999999999999999999887642 24668888999999999999999999987754
No 198
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=94.92 E-value=0.078 Score=51.58 Aligned_cols=85 Identities=12% Similarity=-0.005 Sum_probs=50.2
Q ss_pred cCCHHHHHHHHHHHHHc---CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-----CC-CCC-HHHHHHHHH
Q 047934 186 DGLIQEAMKLFGLMREK---GTIPE----VVIYTAVVDGFCKAQKFDDAKRIFRKMQSN-----GI-APN-AFSYNLLIQ 251 (344)
Q Consensus 186 ~g~~~~A~~lf~~M~~~---g~~pd----~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~-----gi-~pd-~~tyn~LI~ 251 (344)
.|++++|+.++++..+. -+.|+ ..+++.|..+|...|++++|+.++++..+- |- .|+ ..+|+.|-.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 35667777777655432 12222 356677777777777777777777665431 21 122 345666667
Q ss_pred HHHHcCCHHHHHHHHHHHH
Q 047934 252 GLYKCNKLEEAVEYCIEML 270 (344)
Q Consensus 252 ay~k~g~~~~A~~lf~~M~ 270 (344)
.|...|++++|+.++++..
T Consensus 391 ~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHH
Confidence 7777777777777666543
No 199
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=94.89 E-value=0.16 Score=49.28 Aligned_cols=93 Identities=11% Similarity=0.056 Sum_probs=73.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----cC-CCCC-HH
Q 047934 214 VVDGFCKAQKFDDAKRIFRKMQSN---GIAPN----AFSYNLLIQGLYKCNKLEEAVEYCIEMLE-----AG-HSPN-VT 279 (344)
Q Consensus 214 LI~ay~k~g~~e~A~~vf~~M~~~---gi~pd----~~tyn~LI~ay~k~g~~~~A~~lf~~M~~-----~g-v~pd-~~ 279 (344)
.+..+.+.|++++|+.++++..+. -+.++ ..+++.|...|...|++++|+.++++..+ .| -.|+ ..
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~ 372 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV 372 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence 355567889999999999998763 12222 46899999999999999999999998764 23 2333 45
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 047934 280 TFVGLVDGLCRERGVEKAQSVIATLKE 306 (344)
Q Consensus 280 ty~~lL~a~~~~G~~e~a~~l~~~M~~ 306 (344)
+++.|-..|...|++++|..++.+..+
T Consensus 373 ~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 373 QVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 688899999999999999999997654
No 200
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=94.72 E-value=0.2 Score=48.71 Aligned_cols=87 Identities=9% Similarity=0.002 Sum_probs=68.8
Q ss_pred HcCCHHHHHHHHHHHHH---CCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----cC-CCCC-HHHHHHHH
Q 047934 220 KAQKFDDAKRIFRKMQS---NGIAPN----AFSYNLLIQGLYKCNKLEEAVEYCIEMLE-----AG-HSPN-VTTFVGLV 285 (344)
Q Consensus 220 k~g~~e~A~~vf~~M~~---~gi~pd----~~tyn~LI~ay~k~g~~~~A~~lf~~M~~-----~g-v~pd-~~ty~~lL 285 (344)
..|++++|+.++++..+ .-+.++ ..+++.|..+|...|++++|+.++++..+ .| -.|+ ..+|+.|-
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 45789999999988755 222233 46899999999999999999999998764 23 2344 45688899
Q ss_pred HHHHHcCCHHHHHHHHHHHHH
Q 047934 286 DGLCRERGVEKAQSVIATLKE 306 (344)
Q Consensus 286 ~a~~~~G~~e~a~~l~~~M~~ 306 (344)
..|...|++++|..++++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999997654
No 201
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=94.68 E-value=0.31 Score=49.74 Aligned_cols=83 Identities=14% Similarity=0.113 Sum_probs=41.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 047934 207 EVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVD 286 (344)
Q Consensus 207 d~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~ 286 (344)
+...|..|-.++.+.++++.|++.|..+.. |..+...|...++.+...++-+.....| -++....
T Consensus 680 ~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~------~~~~A~~ 744 (814)
T 3mkq_A 680 AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTG------KFNLAFN 744 (814)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTT------CHHHHHH
T ss_pred cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcC------chHHHHH
Confidence 456666666666666666666666665542 2233333333444444443333333322 1233333
Q ss_pred HHHHcCCHHHHHHHHHHH
Q 047934 287 GLCRERGVEKAQSVIATL 304 (344)
Q Consensus 287 a~~~~G~~e~a~~l~~~M 304 (344)
+|.+.|++++|.+++.++
T Consensus 745 ~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 745 AYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HHHHHTCHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHc
Confidence 445556666666665543
No 202
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=94.41 E-value=0.17 Score=46.93 Aligned_cols=96 Identities=13% Similarity=0.114 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH------------------HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 047934 209 VIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAF------------------SYNLLIQGLYKCNKLEEAVEYCIEML 270 (344)
Q Consensus 209 ~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~------------------tyn~LI~ay~k~g~~~~A~~lf~~M~ 270 (344)
..+..+-..|.+.|++++|...|++.... .|+.. .|..+-.+|.+.|++++|+..|++..
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al 257 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVL 257 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34555666777889999999999987654 34433 78889999999999999999999988
Q ss_pred HcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 047934 271 EAGHSPNVTTFVGLVDGLCRERGVEKAQSVIATLKEK 307 (344)
Q Consensus 271 ~~gv~pd~~ty~~lL~a~~~~G~~e~a~~l~~~M~~~ 307 (344)
+.. .-+...|..+-.+|...|++++|.+.|....+.
T Consensus 258 ~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l 293 (338)
T 2if4_A 258 TEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKY 293 (338)
T ss_dssp HHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 753 236788899999999999999999999987643
No 203
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=94.29 E-value=1.4 Score=36.18 Aligned_cols=85 Identities=16% Similarity=0.100 Sum_probs=64.6
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 047934 220 KAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRERGVEKAQS 299 (344)
Q Consensus 220 k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~~e~a~~ 299 (344)
.||++..+...+-.+-. +.......++.+...|.-|.-.++..++.. ..+|+......+-.||.+.|+..++.+
T Consensus 73 ~C~NlKrVi~C~~~~n~-----~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~e 146 (172)
T 1wy6_A 73 KCQNLKSVVECGVINNT-----LNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATT 146 (172)
T ss_dssp GCSCTHHHHHHHHHTTC-----CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hhhcHHHHHHHHHHhcc-----hHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHH
Confidence 45555555555543322 445567778888889999988888888543 457788888999999999999999999
Q ss_pred HHHHHHHCCCc
Q 047934 300 VIATLKEKGFL 310 (344)
Q Consensus 300 l~~~M~~~Gi~ 310 (344)
++.+.-++|++
T Consensus 147 Ll~~AC~kG~k 157 (172)
T 1wy6_A 147 LLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHTTCH
T ss_pred HHHHHHHhhhH
Confidence 99999999987
No 204
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=94.23 E-value=0.94 Score=44.43 Aligned_cols=92 Identities=11% Similarity=0.053 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 047934 209 VIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYN--LLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVD 286 (344)
Q Consensus 209 ~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn--~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~ 286 (344)
.+|-..+..+.+.+.++.|+.+|+.. ... ..+...|. +.+.... .++.+.|..+|+...+.- .-+...+...++
T Consensus 287 ~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~-~~d~~~ar~ife~al~~~-~~~~~~~~~yid 362 (493)
T 2uy1_A 287 LLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYA-TGSRATPYNIFSSGLLKH-PDSTLLKEEFFL 362 (493)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHH-HCCSHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHH-CCChHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 34555555555667788888888877 221 12333443 3333322 235888888888877642 112344455566
Q ss_pred HHHHcCCHHHHHHHHHHH
Q 047934 287 GLCRERGVEKAQSVIATL 304 (344)
Q Consensus 287 a~~~~G~~e~a~~l~~~M 304 (344)
-..+.|+.+.|+.+|+.+
T Consensus 363 ~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 363 FLLRIGDEENARALFKRL 380 (493)
T ss_dssp HHHHHTCHHHHHHHHHHS
T ss_pred HHHHcCCHHHHHHHHHHH
Confidence 666778888888888775
No 205
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=94.21 E-value=1 Score=44.16 Aligned_cols=119 Identities=10% Similarity=0.036 Sum_probs=85.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 047934 179 MLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYT--AVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKC 256 (344)
Q Consensus 179 li~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn--~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~ 256 (344)
.+..+.+.+..+.|..+|+.. +.. ..+..+|. +.|.... .++.+.|+.+|+...+.- .-+...|...++...+.
T Consensus 292 y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~-~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~ 367 (493)
T 2uy1_A 292 HLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYA-TGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRI 367 (493)
T ss_dssp HHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHH-HCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHH-CCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHc
Confidence 444444567899999999988 321 12444454 4444333 236999999999987752 22355677788888899
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 047934 257 NKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRERGVEKAQSVIATLKE 306 (344)
Q Consensus 257 g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~~e~a~~l~~~M~~ 306 (344)
|+.+.|..+|++.. -....|...+.-=...|+.+.+.++++.+..
T Consensus 368 ~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 368 GDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp TCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999999999972 2467777777777788999999998888764
No 206
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=93.90 E-value=2.9 Score=41.69 Aligned_cols=161 Identities=6% Similarity=-0.061 Sum_probs=112.3
Q ss_pred CHHHHHHHHHHHHHCCCCC--CHHH---HHHHHHHcC-------CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-
Q 047934 156 PPQEADEIFKKMKETGLIP--NAVA---MLDGLCKDG-------LIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQ- 222 (344)
Q Consensus 156 ~~~~A~~lf~~M~~~gi~p--~~~t---li~~~~k~g-------~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g- 222 (344)
.-++|++.++++.+.+-.- -|+. ++..+.+.. .+++++++++.+.+..-+ +..+|+----.+.+.+
T Consensus 44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSS
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccc
Confidence 3567888888887754321 1221 333332211 189999999999876543 7788887777778888
Q ss_pred -CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc---------
Q 047934 223 -KFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCN-KLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRE--------- 291 (344)
Q Consensus 223 -~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g-~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~--------- 291 (344)
+++++.+.++++.+.... |...|+.--..+.+.| ..+++++.++++.+... -|...|+-.-..+.+.
T Consensus 123 ~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p-~n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 123 PNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp CCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC-CCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred ccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCC-CCccHHHHHHHHHHhhccccccccc
Confidence 779999999999987533 7888998888888888 89999999999877643 3777887766666653
Q ss_pred -----CCHHHHHHHHHHHHHCCCcccHHHHHHHH
Q 047934 292 -----RGVEKAQSVIATLKEKGFLVNDKAVREFL 320 (344)
Q Consensus 292 -----G~~e~a~~l~~~M~~~Gi~p~~~~~~~Ll 320 (344)
+.++++.+.+.......-. +...|..+-
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~~P~-~~saW~y~~ 233 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFTDPN-DQSAWFYHR 233 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHCSS-CSHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHhhCCC-CccHHHHHH
Confidence 4578888888877764321 334444433
No 207
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=93.73 E-value=0.14 Score=52.23 Aligned_cols=108 Identities=11% Similarity=0.008 Sum_probs=75.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 047934 177 VAMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKC 256 (344)
Q Consensus 177 ~tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~ 256 (344)
..++..+.+.|..++|+++.+.-. .-...+..+|++++|.++.+.+. +...|..|-..+.+.
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~A~~~~~~~~------~~~~W~~la~~al~~ 694 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTLARDLLTDES------AEMKWRALGDASLQR 694 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHHHHHHHTTCC------CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHHHHHHHHhhC------cHhHHHHHHHHHHHc
Confidence 457777888899999887764221 12445678899999999876542 778999999999999
Q ss_pred CCHHHHHHHHHHHHHcC-------CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 047934 257 NKLEEAVEYCIEMLEAG-------HSPNVTTFVGLVDGLCRERGVEKAQSVIA 302 (344)
Q Consensus 257 g~~~~A~~lf~~M~~~g-------v~pd~~ty~~lL~a~~~~G~~e~a~~l~~ 302 (344)
++++.|.++|..+.... ..-+..-...+...+...|+++.|..++-
T Consensus 695 ~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~~~~A~~~~~ 747 (814)
T 3mkq_A 695 FNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTGKFNLAFNAYW 747 (814)
T ss_dssp TCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcCchHHHHHHHH
Confidence 99999999999875421 01133334445555555666666665543
No 208
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=93.33 E-value=4.8 Score=36.88 Aligned_cols=156 Identities=8% Similarity=-0.073 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHHHCCCCC--CHHHHHHHHHHcC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH----HHc---CCHH
Q 047934 157 PQEADEIFKKMKETGLIP--NAVAMLDGLCKDG--LIQEAMKLFGLMREKGTIPEVVIYTAVVDGF----CKA---QKFD 225 (344)
Q Consensus 157 ~~~A~~lf~~M~~~gi~p--~~~tli~~~~k~g--~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay----~k~---g~~e 225 (344)
-++|+++++.+...+-.- -|+.==..+...+ ++++++++++.+....-+ +..+|+---..+ .+. ++++
T Consensus 49 s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~~~~ 127 (306)
T 3dra_A 49 SERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDFDPY 127 (306)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred CHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccCCHH
Confidence 456666666665533110 0221122333455 899999999988876433 444554433333 444 7889
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC------HHHH
Q 047934 226 DAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLE--EAVEYCIEMLEAGHSPNVTTFVGLVDGLCRERG------VEKA 297 (344)
Q Consensus 226 ~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~--~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~------~e~a 297 (344)
+++.+++.+.+.. .-+-..|+.---.+.+.+.++ ++++++++|.+.... |...|+----.+.+.+. ++++
T Consensus 128 ~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~eE 205 (306)
T 3dra_A 128 REFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTIDEE 205 (306)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhHHHH
Confidence 9999999998764 337788888877778888887 899999999876433 66677655555555555 7778
Q ss_pred HHHHHHHHHCCCcccHHHH
Q 047934 298 QSVIATLKEKGFLVNDKAV 316 (344)
Q Consensus 298 ~~l~~~M~~~Gi~p~~~~~ 316 (344)
.+.+..+...... |...|
T Consensus 206 l~~~~~aI~~~p~-n~SaW 223 (306)
T 3dra_A 206 LNYVKDKIVKCPQ-NPSTW 223 (306)
T ss_dssp HHHHHHHHHHCSS-CHHHH
T ss_pred HHHHHHHHHhCCC-CccHH
Confidence 8888777765433 33444
No 209
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=93.19 E-value=0.76 Score=38.25 Aligned_cols=114 Identities=10% Similarity=0.029 Sum_probs=70.8
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 047934 185 KDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQK----------FDDAKRIFRKMQSNGIAPNAFSYNLLIQGLY 254 (344)
Q Consensus 185 k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~----------~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~ 254 (344)
+.+.+++|.+.++...+.. +-+...|+.+=.++...++ +++|...|++..+..-. +...|..+=.+|.
T Consensus 14 r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHH
Confidence 4445667777776665543 2255666655555555544 45788888877764211 4567777777777
Q ss_pred HcC-----------CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 047934 255 KCN-----------KLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRERGVEKAQSVIATLKEKG 308 (344)
Q Consensus 255 k~g-----------~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~~e~a~~l~~~M~~~G 308 (344)
..| ++++|++.|++..+. .|+...|...+..+ +++-+++-++...+
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~~~------~ka~el~~~~~~~~ 148 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEMT------AKAPQLHAEAYKQG 148 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHH------HTHHHHHHHHHHSS
T ss_pred HhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHH------HhCHhccCcccccc
Confidence 654 788888888887765 56666665555443 45555555555543
No 210
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=92.70 E-value=0.94 Score=32.66 Aligned_cols=53 Identities=11% Similarity=0.169 Sum_probs=24.2
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 047934 218 FCKAQKFDDAKRIFRKMQSNGIAPNAF-SYNLLIQGLYKCNKLEEAVEYCIEMLE 271 (344)
Q Consensus 218 y~k~g~~e~A~~vf~~M~~~gi~pd~~-tyn~LI~ay~k~g~~~~A~~lf~~M~~ 271 (344)
+.+.|++++|...|+...+.. .-+.. .|..+-.+|.+.|++++|.+.|++..+
T Consensus 10 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 10 LINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIE 63 (99)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344445555555554444331 11233 444444445555555555555554444
No 211
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=92.56 E-value=0.96 Score=32.62 Aligned_cols=58 Identities=12% Similarity=0.138 Sum_probs=47.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 047934 179 MLDGLCKDGLIQEAMKLFGLMREKGTIPEVV-IYTAVVDGFCKAQKFDDAKRIFRKMQSN 237 (344)
Q Consensus 179 li~~~~k~g~~~~A~~lf~~M~~~g~~pd~~-tyn~LI~ay~k~g~~e~A~~vf~~M~~~ 237 (344)
....+.+.|++++|.+.|+...+.. +-+.. .+..+-.+|...|++++|...|++..+.
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3456778899999999999887753 23566 8888888999999999999999998875
No 212
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=92.46 E-value=6.4 Score=39.19 Aligned_cols=120 Identities=9% Similarity=0.039 Sum_probs=92.4
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 047934 188 LIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQK----------FDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCN 257 (344)
Q Consensus 188 ~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~----------~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g 257 (344)
..++|++.++.+.+..-. +..+|+.-=.++.+.++ ++++...++.+.+..-+ +...|+.--..+.+.+
T Consensus 44 ~~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 44 LDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcc
Confidence 457889999998876422 45666655555555555 89999999999886433 7788998888888889
Q ss_pred --CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHCCCc
Q 047934 258 --KLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRER-GVEKAQSVIATLKEKGFL 310 (344)
Q Consensus 258 --~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~G-~~e~a~~l~~~M~~~Gi~ 310 (344)
++++++++++++.+.... |..+|+.---.+.+.| ..+++.+.++.+.+....
T Consensus 122 ~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~ 176 (567)
T 1dce_A 122 EPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS 176 (567)
T ss_dssp SCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC
T ss_pred cccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC
Confidence 789999999999987533 7888887777777888 889999998888776543
No 213
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=92.22 E-value=7.6 Score=36.37 Aligned_cols=159 Identities=10% Similarity=-0.027 Sum_probs=107.6
Q ss_pred CHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc-C-CHHHHHHH
Q 047934 156 PPQEADEIFKKMKETGLIP--NAVAMLDGLCKDG-LIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKA-Q-KFDDAKRI 230 (344)
Q Consensus 156 ~~~~A~~lf~~M~~~gi~p--~~~tli~~~~k~g-~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~-g-~~e~A~~v 230 (344)
..++|+++++.+...+-.- -|+.-=..+...| .+++++++++.+....-+ +..+|+---..+... + +.++++.+
T Consensus 69 ~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~~~EL~~ 147 (349)
T 3q7a_A 69 KSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDPVSEIEY 147 (349)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCCHHHHHH
T ss_pred CCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCChHHHHHH
Confidence 3457888888777654221 0222122233456 599999999999876443 777887776666666 6 88999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-------HH
Q 047934 231 FRKMQSNGIAPNAFSYNLLIQGLYKCNKLE--------EAVEYCIEMLEAGHSPNVTTFVGLVDGLCRERG-------VE 295 (344)
Q Consensus 231 f~~M~~~gi~pd~~tyn~LI~ay~k~g~~~--------~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~-------~e 295 (344)
++.+.+... -|...|+.---.+.+.+.++ ++++.++++.+.... |...|+-.-..+.+.+. ++
T Consensus 148 ~~k~L~~dp-kNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~~~~~~ 225 (349)
T 3q7a_A 148 IHGSLLPDP-KNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETSSRSLQ 225 (349)
T ss_dssp HHHHTSSCT-TCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCCHHHHH
T ss_pred HHHHHHhCC-CCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccchHHHH
Confidence 999987643 37778876555555555555 899999999886433 77788777666666665 67
Q ss_pred HHHHHHHHHHHCCCcccHHHHHH
Q 047934 296 KAQSVIATLKEKGFLVNDKAVRE 318 (344)
Q Consensus 296 ~a~~l~~~M~~~Gi~p~~~~~~~ 318 (344)
++.+.+..+....-. |...|+-
T Consensus 226 eELe~~~~aI~~~P~-n~SaW~Y 247 (349)
T 3q7a_A 226 DELIYILKSIHLIPH-NVSAWNY 247 (349)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHH
T ss_pred HHHHHHHHHHHhCCC-CHHHHHH
Confidence 888888877765433 4455533
No 214
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=91.43 E-value=5.8 Score=33.48 Aligned_cols=51 Identities=10% Similarity=0.106 Sum_probs=26.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 047934 178 AMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRIFRKM 234 (344)
Q Consensus 178 tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M 234 (344)
+=+....+.|+++.|.++.+.+ -+...|..|=+.....|+++-|++.|...
T Consensus 10 ~rF~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 10 IRFDLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 3344444555555555554443 14455555555555555555555555544
No 215
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=91.35 E-value=5.2 Score=37.15 Aligned_cols=15 Identities=13% Similarity=0.067 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHCC
Q 047934 157 PQEADEIFKKMKETG 171 (344)
Q Consensus 157 ~~~A~~lf~~M~~~g 171 (344)
+++++.+++.+.+.+
T Consensus 126 ~~~EL~~~~k~l~~d 140 (331)
T 3dss_A 126 WARELELCARFLEAD 140 (331)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhC
Confidence 445555555555443
No 216
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=91.08 E-value=10 Score=35.53 Aligned_cols=146 Identities=12% Similarity=0.077 Sum_probs=102.9
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-CHHHHHHHH
Q 047934 153 ISEPPQEADEIFKKMKETGLIPNAVAMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQ-KFDDAKRIF 231 (344)
Q Consensus 153 ~sg~~~~A~~lf~~M~~~gi~p~~~tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g-~~e~A~~vf 231 (344)
.+.++.+|...|..+...+-. .++|+++++.+....- -+..+|+.-=..+...+ .+++++.++
T Consensus 49 y~~~y~~~~~~~r~~~~~~e~---------------se~AL~lt~~~L~~nP-~~ytaWn~R~~iL~~l~~~l~eEL~~~ 112 (349)
T 3q7a_A 49 YSEEYKDAMDYFRAIAAKEEK---------------SERALELTEIIVRMNP-AHYTVWQYRFSLLTSLNKSLEDELRLM 112 (349)
T ss_dssp CCHHHHHHHHHHHHHHHTTCC---------------SHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred eCHHHHHHHHHHHHHHHhCCC---------------CHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 345677888888777776644 3689999998887632 25667777767777778 599999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHc-C-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH--------HHHHHH
Q 047934 232 RKMQSNGIAPNAFSYNLLIQGLYKC-N-KLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRERGVE--------KAQSVI 301 (344)
Q Consensus 232 ~~M~~~gi~pd~~tyn~LI~ay~k~-g-~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~~e--------~a~~l~ 301 (344)
+.+....-+ +...|+.--..+.+. + .+++++++++.+.+.. .-|..+|+----.+.+.|..+ ++.+.+
T Consensus 113 ~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~ 190 (349)
T 3q7a_A 113 NEFAVQNLK-SYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWC 190 (349)
T ss_dssp HHHHHTTCC-CHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred HHHHHhCCC-cHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHH
Confidence 999987543 778898877777776 6 8899999999998653 236677765443444444444 888888
Q ss_pred HHHHHCCCcccHHHHH
Q 047934 302 ATLKEKGFLVNDKAVR 317 (344)
Q Consensus 302 ~~M~~~Gi~p~~~~~~ 317 (344)
+.+.+.... |...|+
T Consensus 191 ~k~I~~dp~-N~SAW~ 205 (349)
T 3q7a_A 191 NEMLRVDGR-NNSAWG 205 (349)
T ss_dssp HHHHHHCTT-CHHHHH
T ss_pred HHHHHhCCC-CHHHHH
Confidence 888876543 333333
No 217
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=90.47 E-value=5.4 Score=33.70 Aligned_cols=124 Identities=9% Similarity=0.007 Sum_probs=89.5
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 047934 154 SEPPQEADEIFKKMKETGLIPNAVAMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRIFRK 233 (344)
Q Consensus 154 sg~~~~A~~lf~~M~~~gi~p~~~tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~ 233 (344)
.|+++.|.++-+++ +....|..|-......|+++-|.+.|....+ |..|.--|.-.|+.+...++-+.
T Consensus 18 lg~l~~A~e~a~~l---~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kla~i 85 (177)
T 3mkq_B 18 YGNLDAALDEAKKL---NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKMQNI 85 (177)
T ss_dssp TTCHHHHHHHHHHH---CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHh---CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHHHHH
Confidence 67899999998776 3333588999999999999999999987643 45677777888888877766655
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 047934 234 MQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRERGVEKAQSVIATL 304 (344)
Q Consensus 234 M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~~e~a~~l~~~M 304 (344)
-...| -++....++...|+++++.++|.+.-. -|. -+-.....|..+.|.++.+++
T Consensus 86 A~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~r---~~e------A~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 86 AQTRE------DFGSMLLNTFYNNSTKERSSIFAEGGS---LPL------AYAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTTC---HHH------HHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCCC---hHH------HHHHHHHcCcHHHHHHHHHHh
Confidence 55554 466677777788999999999865432 111 111122367788888888765
No 218
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=89.84 E-value=2.8 Score=34.57 Aligned_cols=82 Identities=13% Similarity=0.187 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHcCCHHHHH
Q 047934 189 IQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQ---KFDDAKRIFRKMQSNGIAP--NAFSYNLLIQGLYKCNKLEEAV 263 (344)
Q Consensus 189 ~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g---~~e~A~~vf~~M~~~gi~p--d~~tyn~LI~ay~k~g~~~~A~ 263 (344)
...+.+-|.+..+.|. ++..+.-.+--++++.. +++++..+|+...+.. .| ....+=.|--+|.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 3445555555555444 45555555555666666 4556777777766653 12 1223333444556777777777
Q ss_pred HHHHHHHHc
Q 047934 264 EYCIEMLEA 272 (344)
Q Consensus 264 ~lf~~M~~~ 272 (344)
+.++.+.+.
T Consensus 92 ~y~~~lL~i 100 (152)
T 1pc2_A 92 KYVRGLLQT 100 (152)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 777776654
No 219
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=88.24 E-value=1.2 Score=36.99 Aligned_cols=102 Identities=11% Similarity=0.053 Sum_probs=76.6
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHcCCCC-CHHHHHHHHHH
Q 047934 219 CKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNK----------LEEAVEYCIEMLEAGHSP-NVTTFVGLVDG 287 (344)
Q Consensus 219 ~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~----------~~~A~~lf~~M~~~gv~p-d~~ty~~lL~a 287 (344)
.+.+.+++|.+.++...+.. .-+...|..+=.++...++ +++|+..|++..+. .| +..+|..+-.+
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l--dP~~~~A~~~LG~a 89 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--DPKKDEAVWCIGNA 89 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh--CcCcHHHHHHHHHH
Confidence 45567889999999887753 2267788777777777765 45899999888775 34 57788889999
Q ss_pred HHHcC-----------CHHHHHHHHHHHHHCCCcccHHHHHHHHhccCC
Q 047934 288 LCRER-----------GVEKAQSVIATLKEKGFLVNDKAVREFLDKKAP 325 (344)
Q Consensus 288 ~~~~G-----------~~e~a~~l~~~M~~~Gi~p~~~~~~~Ll~~yak 325 (344)
|...| ++++|.+.|+...+. .|+...|...+++..+
T Consensus 90 y~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~~~~k 136 (158)
T 1zu2_A 90 YTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEMTAK 136 (158)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHT
T ss_pred HHHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHh
Confidence 98774 899999999988874 6777777777665443
No 220
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=87.92 E-value=14 Score=34.90 Aligned_cols=123 Identities=10% Similarity=0.001 Sum_probs=80.3
Q ss_pred CHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHH----HcC-C---HHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHcC
Q 047934 188 LIQEAMKLFGLMREKGTIPE-VVIYTAVVDGFC----KAQ-K---FDDAKRIFRKMQS-NGIAPNAFSYNLLIQGLYKCN 257 (344)
Q Consensus 188 ~~~~A~~lf~~M~~~g~~pd-~~tyn~LI~ay~----k~g-~---~e~A~~vf~~M~~-~gi~pd~~tyn~LI~ay~k~g 257 (344)
...+|..+|++..+. .|+ ...|..+--+|. ..+ . .+....-+..... ..-..+..+|.++--.+...|
T Consensus 214 ~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~g 291 (372)
T 3ly7_A 214 SLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKG 291 (372)
T ss_dssp HHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCC
Confidence 347899999988775 343 344443333332 111 1 1111112222111 122557888888877777789
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCcccHHHH
Q 047934 258 KLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRERGVEKAQSVIATLKEKGFLVNDKAV 316 (344)
Q Consensus 258 ~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~~e~a~~l~~~M~~~Gi~p~~~~~ 316 (344)
++++|...+++....+ |+...|..+-..+.-.|+.++|.+.+++.... .|...+|
T Consensus 292 d~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~ 346 (372)
T 3ly7_A 292 KTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTL 346 (372)
T ss_dssp CHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHH
T ss_pred CHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChH
Confidence 9999999999999886 78877877777788899999999999887765 4444444
No 221
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=87.56 E-value=2.9 Score=39.61 Aligned_cols=68 Identities=13% Similarity=0.105 Sum_probs=45.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----cCCCCCHHH
Q 047934 212 TAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLE-----AGHSPNVTT 280 (344)
Q Consensus 212 n~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~-----~gv~pd~~t 280 (344)
..++.++...|+.++|...+..+... -..+...|..+|.+|.++|+..+|++.|+++.. .|+.|...+
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 44566666777777777776666543 133666777777777777777777777776543 477777665
No 222
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=87.44 E-value=4.5 Score=30.11 Aligned_cols=65 Identities=9% Similarity=0.072 Sum_probs=37.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 047934 207 EVVIYTAVVDGFCKAQKFDDAKRIFRKMQSN------GIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLE 271 (344)
Q Consensus 207 d~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~------gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~ 271 (344)
+...+-.|=..+.+.++++.|...|+...+. .-......|..|-.+|.+.|++++|..++++..+
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 3344445555556666666666666555432 0122445666666677777777777777766655
No 223
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=86.20 E-value=5.2 Score=37.90 Aligned_cols=121 Identities=12% Similarity=0.032 Sum_probs=82.9
Q ss_pred CHHHHHHHHHHHHHCCCCCCHH----HHHHHHH----HcC-CHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHHHHcC
Q 047934 156 PPQEADEIFKKMKETGLIPNAV----AMLDGLC----KDG-LIQEAMKLFGLMRE----KGTIPEVVIYTAVVDGFCKAQ 222 (344)
Q Consensus 156 ~~~~A~~lf~~M~~~gi~p~~~----tli~~~~----k~g-~~~~A~~lf~~M~~----~g~~pd~~tyn~LI~ay~k~g 222 (344)
...+|..+|++..+.+ |+.. .+-.+|. ... .......+-..+.. .....+..+|.++-.++...|
T Consensus 214 ~~~~A~~l~e~Al~lD--P~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~g 291 (372)
T 3ly7_A 214 SLNRASELLGEIVQSS--PEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKG 291 (372)
T ss_dssp HHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCC
Confidence 5689999999988754 4322 1111221 111 11111111111211 123668899999888888889
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 047934 223 KFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTFV 282 (344)
Q Consensus 223 ~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty~ 282 (344)
++++|...+++....+ |+...|..+=..+.-.|++++|.+.|++-... .|...||.
T Consensus 292 d~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~~ 347 (372)
T 3ly7_A 292 KTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTLY 347 (372)
T ss_dssp CHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHHH
T ss_pred CHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChHH
Confidence 9999999999999875 78888888888888999999999999887765 57777764
No 224
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=85.44 E-value=3.2 Score=39.24 Aligned_cols=70 Identities=14% Similarity=0.204 Sum_probs=58.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCCHHHHHH
Q 047934 178 AMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQS-----NGIAPNAFSYNL 248 (344)
Q Consensus 178 tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~-----~gi~pd~~tyn~ 248 (344)
.++..+...|+.++|......+... -+.+...|-.||.+|.++|+..+|+++|+.+.+ .|++|+..+-..
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l 250 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRAL 250 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 3677888899999999988888755 355889999999999999999999999998755 489998776433
No 225
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=85.41 E-value=23 Score=32.74 Aligned_cols=147 Identities=7% Similarity=-0.011 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHHHCCCCCCH---H---HHHHHHHHcC-------CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-
Q 047934 157 PQEADEIFKKMKETGLIPNA---V---AMLDGLCKDG-------LIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQ- 222 (344)
Q Consensus 157 ~~~A~~lf~~M~~~gi~p~~---~---tli~~~~k~g-------~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g- 222 (344)
-++|+++++.+...+-. .. + -++..+.... .+++++.+++.+....- -+..+|+----.+.+.+
T Consensus 46 s~eaL~~t~~~L~~nP~-~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~P-Kny~aW~hR~wlL~~l~~ 123 (331)
T 3dss_A 46 DESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP-KSYGTWHHRCWLLSRLPE 123 (331)
T ss_dssp SHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHCSS
T ss_pred CHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHhccCc
Confidence 45788888888865422 22 2 2444444422 26789999998887643 37788877777777777
Q ss_pred -CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc---------
Q 047934 223 -KFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNK-LEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRE--------- 291 (344)
Q Consensus 223 -~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~-~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~--------- 291 (344)
.+++++.+++.+.+... -|...|+.---.+...|. ++++++.++++.+.... |...|+-.-..+.+.
T Consensus 124 ~~~~~EL~~~~k~l~~dp-rNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~~~~ 201 (331)
T 3dss_A 124 PNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQ 201 (331)
T ss_dssp CCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHHSCCC-----
T ss_pred ccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhhhccccccc
Confidence 48999999999988643 378889888777788888 69999999999986533 677776655555444
Q ss_pred -----CCHHHHHHHHHHHHHC
Q 047934 292 -----RGVEKAQSVIATLKEK 307 (344)
Q Consensus 292 -----G~~e~a~~l~~~M~~~ 307 (344)
+.++++.+.+......
T Consensus 202 ~~~~~~~~~eEle~~~~ai~~ 222 (331)
T 3dss_A 202 GRLPENVLLKELELVQNAFFT 222 (331)
T ss_dssp -CCCHHHHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHh
Confidence 4467777777777654
No 226
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=85.31 E-value=7 Score=32.12 Aligned_cols=80 Identities=14% Similarity=0.163 Sum_probs=43.1
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHcC---CHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHcCCHHHH
Q 047934 156 PPQEADEIFKKMKETGLIPNAVA---MLDGLCKDG---LIQEAMKLFGLMREKGTIP--EVVIYTAVVDGFCKAQKFDDA 227 (344)
Q Consensus 156 ~~~~A~~lf~~M~~~gi~p~~~t---li~~~~k~g---~~~~A~~lf~~M~~~g~~p--d~~tyn~LI~ay~k~g~~e~A 227 (344)
.+..+++-|.+..+.|.. +..+ +--++++.. +++++..+|++..+.. .| ....+=.|=-+|.+.|++++|
T Consensus 13 ~l~~~~~~y~~e~~~~~~-~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGSV-SKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHccCCC-cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHH
Confidence 455666666655554442 3332 444555555 5556777777666653 12 122222233345677777777
Q ss_pred HHHHHHHHHC
Q 047934 228 KRIFRKMQSN 237 (344)
Q Consensus 228 ~~vf~~M~~~ 237 (344)
++.++.+.+.
T Consensus 91 ~~y~~~lL~i 100 (152)
T 1pc2_A 91 LKYVRGLLQT 100 (152)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 7777776653
No 227
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=85.30 E-value=7.6 Score=28.76 Aligned_cols=66 Identities=15% Similarity=0.040 Sum_probs=53.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 047934 242 NAFSYNLLIQGLYKCNKLEEAVEYCIEMLEA------GHSPNVTTFVGLVDGLCRERGVEKAQSVIATLKEK 307 (344)
Q Consensus 242 d~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~------gv~pd~~ty~~lL~a~~~~G~~e~a~~l~~~M~~~ 307 (344)
+..-+-.|-..+.+.++++.|...|+...+. .-......+..+-.+|.+.|++++|..++++..+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 4555667778888999999999999987653 11345677888999999999999999999998864
No 228
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=84.61 E-value=8.2 Score=28.38 Aligned_cols=65 Identities=12% Similarity=0.191 Sum_probs=38.6
Q ss_pred CHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 047934 207 EVVIYTAVVDGFCKAQK---FDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEA 272 (344)
Q Consensus 207 d~~tyn~LI~ay~k~g~---~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~ 272 (344)
|...+..+-.++...++ .++|..+|++..+.. .-++..+..+-..+.+.|++++|...|+++.+.
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 44455555555543333 567777777766542 113455556666666777777777777777664
No 229
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=81.61 E-value=4.7 Score=30.99 Aligned_cols=48 Identities=8% Similarity=0.098 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 047934 224 FDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLE 271 (344)
Q Consensus 224 ~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~ 271 (344)
.-++++-++.+....+.|+.....+.+.||-+.+++..|.++|+..+.
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~ 73 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 73 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 334555555555555555555555555555555555555555555544
No 230
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=80.69 E-value=24 Score=32.31 Aligned_cols=105 Identities=14% Similarity=0.103 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc-CCHH
Q 047934 190 QEAMKLFGLMREKGTIPE---VVIYTAVVDGFCKA-----QKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKC-NKLE 260 (344)
Q Consensus 190 ~~A~~lf~~M~~~g~~pd---~~tyn~LI~ay~k~-----g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~-g~~~ 260 (344)
..|..++++..+ +.|+ -..|..|-..|.+. |+.++|++.|++..+-.-.-+..++...-+.|+.. |+.+
T Consensus 180 ~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~ 257 (301)
T 3u64_A 180 HAAVMMLERACD--LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA 257 (301)
T ss_dssp HHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred HHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence 344444544444 3344 45788888888884 88899999998887753222477777888888874 8888
Q ss_pred HHHHHHHHHHHcCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 047934 261 EAVEYCIEMLEAGHS--PNVTTFVGLVDGLCRERGVEKAQSVIATL 304 (344)
Q Consensus 261 ~A~~lf~~M~~~gv~--pd~~ty~~lL~a~~~~G~~e~a~~l~~~M 304 (344)
++.+.+++....... |+....+.+- -++|..++..+
T Consensus 258 ~a~~~L~kAL~a~p~~~P~~~lan~~~--------q~eA~~LL~~~ 295 (301)
T 3u64_A 258 GFDEALDRALAIDPESVPHNKLLVILS--------QKRARWLKAHV 295 (301)
T ss_dssp HHHHHHHHHHHCCGGGCSSCHHHHHHH--------HHHHHHHHHTH
T ss_pred HHHHHHHHHHcCCCCCCCChhHHHHHH--------HHHHHHHHHHh
Confidence 889888888887665 6655444332 24555555443
No 231
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=79.31 E-value=12 Score=30.84 Aligned_cols=63 Identities=10% Similarity=0.082 Sum_probs=42.3
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCcccHHHHHHH
Q 047934 256 CNKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRERGVEKAQSVIATLKEKGFLVNDKAVREF 319 (344)
Q Consensus 256 ~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~~e~a~~l~~~M~~~Gi~p~~~~~~~L 319 (344)
.++.++|.++|+.+...+-.. ...|...-.-=.+.|++..|++++......+-+|....-.++
T Consensus 73 i~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~ 135 (161)
T 4h7y_A 73 IQEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIAL 135 (161)
T ss_dssp HHCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHH
Confidence 478888888888887653333 444444444445788999999999988888777654433333
No 232
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=77.78 E-value=9.6 Score=30.27 Aligned_cols=21 Identities=29% Similarity=0.578 Sum_probs=10.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHH
Q 047934 251 QGLYKCNKLEEAVEYCIEMLE 271 (344)
Q Consensus 251 ~ay~k~g~~~~A~~lf~~M~~ 271 (344)
-+|.+.|++++|.+.++.+.+
T Consensus 82 vg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 82 VGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHH
Confidence 344555555555555555544
No 233
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=77.19 E-value=19 Score=26.33 Aligned_cols=67 Identities=13% Similarity=0.038 Sum_probs=52.3
Q ss_pred CCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 047934 241 PNAFSYNLLIQGLYKCNK---LEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRERGVEKAQSVIATLKEKG 308 (344)
Q Consensus 241 pd~~tyn~LI~ay~k~g~---~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~~e~a~~l~~~M~~~G 308 (344)
.|...+..+-.++...++ .++|..+|++..... .-+......+-..+...|++++|...|+.+.+..
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 466777777777765554 699999999988753 2246667777788889999999999999998763
No 234
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=77.06 E-value=20 Score=32.83 Aligned_cols=95 Identities=11% Similarity=0.058 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-cCCHH
Q 047934 225 DDAKRIFRKMQSNGIAPN---AFSYNLLIQGLYKC-----NKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCR-ERGVE 295 (344)
Q Consensus 225 e~A~~vf~~M~~~gi~pd---~~tyn~LI~ay~k~-----g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~-~G~~e 295 (344)
..|+..+++..+. .|+ -..|..|-..|.+. |+.++|.++|++-.+..-.-+..++...-..++. .|+.+
T Consensus 180 ~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~ 257 (301)
T 3u64_A 180 HAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA 257 (301)
T ss_dssp HHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred HHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence 4555556655553 566 45789999999994 9999999999998886422246777778888887 49999
Q ss_pred HHHHHHHHHHHCCCc--ccHHHHHHHHh
Q 047934 296 KAQSVIATLKEKGFL--VNDKAVREFLD 321 (344)
Q Consensus 296 ~a~~l~~~M~~~Gi~--p~~~~~~~Ll~ 321 (344)
++.+.++........ |+....+.+-.
T Consensus 258 ~a~~~L~kAL~a~p~~~P~~~lan~~~q 285 (301)
T 3u64_A 258 GFDEALDRALAIDPESVPHNKLLVILSQ 285 (301)
T ss_dssp HHHHHHHHHHHCCGGGCSSCHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCChhHHHHHHH
Confidence 999999999998776 77666665543
No 235
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=76.20 E-value=11 Score=28.99 Aligned_cols=63 Identities=22% Similarity=0.258 Sum_probs=45.6
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 047934 188 LIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQ 251 (344)
Q Consensus 188 ~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ 251 (344)
+.-++.+-++.+....+.|+..+..+.+.+|-+..++..|.++|+.++.+- .....+|..++.
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence 445666667777777788888888888888888888888888888887642 222345665554
No 236
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=74.31 E-value=20 Score=29.26 Aligned_cols=119 Identities=13% Similarity=0.035 Sum_probs=79.7
Q ss_pred CCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHcCCHHHHHHHHHHHHHc-C----------------CCCCHHHHHHH
Q 047934 154 SEPPQEADEIFKKMKETGLI--PNAVAMLDGLCKDGLIQEAMKLFGLMREK-G----------------TIPEVVIYTAV 214 (344)
Q Consensus 154 sg~~~~A~~lf~~M~~~gi~--p~~~tli~~~~k~g~~~~A~~lf~~M~~~-g----------------~~pd~~tyn~L 214 (344)
.|.+++..++..+.....-. .+|. |=.....-+.+...++++...+- . ..-+...++..
T Consensus 20 dG~v~qGveii~k~~~ssni~E~NW~--ICNiiD~a~C~y~v~vLd~IGkiFDis~C~NlKrVi~C~~~~n~~se~vd~A 97 (172)
T 1wy6_A 20 DGYIDEGVKIVLEITKSSTKSEYNWF--ICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVINNTLNEHVNKA 97 (172)
T ss_dssp TTCHHHHHHHHHHHHHHSCHHHHTHH--HHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHTTCCCHHHHHH
T ss_pred hhhHHHHHHHHHHHcCCCCcccccee--eeecchhhchhHHHHHHHHHhhhcCcHhhhcHHHHHHHHHHhcchHHHHHHH
Confidence 67888999998887764322 1343 22222222333333333332111 0 01255666888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 047934 215 VDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHS 275 (344)
Q Consensus 215 I~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~ 275 (344)
|+.....|+-|...+++..+.. ..+|+....-.+-.||.+-|+..+|.+++.+.-+.|++
T Consensus 98 Ld~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 98 LDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 8889999999999999998644 35778888889999999999999999999999888864
No 237
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=73.83 E-value=63 Score=33.37 Aligned_cols=126 Identities=13% Similarity=0.088 Sum_probs=79.3
Q ss_pred HHHHHHHHcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHC------CCC-CCHH----
Q 047934 178 AMLDGLCKDGL-IQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQK-FDDAKRIFRKMQSN------GIA-PNAF---- 244 (344)
Q Consensus 178 tli~~~~k~g~-~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~-~e~A~~vf~~M~~~------gi~-pd~~---- 244 (344)
+++..+...++ .+.|..+|+.+.+..-..+.....++|..+.+.+. --+|.++..+..+. ... .+..
T Consensus 253 ~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~ 332 (754)
T 4gns_B 253 SLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARL 332 (754)
T ss_dssp HHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHH
T ss_pred HHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccc
Confidence 45555555666 68899999998876433233334455555544442 22344444333210 111 1211
Q ss_pred ------HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 047934 245 ------SYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSP-NVTTFVGLVDGLCRERGVEKAQSVIATLK 305 (344)
Q Consensus 245 ------tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~p-d~~ty~~lL~a~~~~G~~e~a~~l~~~M~ 305 (344)
....=.+-|...|+++.|+++-.+-... .| +-.||..|...|...|+++.|.-.++.+.
T Consensus 333 ~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~--aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 333 MNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL--ALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred cCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc--CchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 1112234455689999999998886654 45 47899999999999999999999999874
No 238
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=72.51 E-value=39 Score=27.82 Aligned_cols=107 Identities=16% Similarity=0.134 Sum_probs=68.4
Q ss_pred HHHHHHHHHcCCH------HHHHHHHHHHHHcCCCCCH----HHHHHHHH---HHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 047934 177 VAMLDGLCKDGLI------QEAMKLFGLMREKGTIPEV----VIYTAVVD---GFCKAQKFDDAKRIFRKMQSNGIAPNA 243 (344)
Q Consensus 177 ~tli~~~~k~g~~------~~A~~lf~~M~~~g~~pd~----~tyn~LI~---ay~k~g~~e~A~~vf~~M~~~gi~pd~ 243 (344)
-..+...-+.|+. ++.+++|+..... ++|+. .-|--|.- .+-..+++++|+++|+.+...+-+. .
T Consensus 17 ~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~hKkF-A 94 (161)
T 4h7y_A 17 LSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANCKKF-A 94 (161)
T ss_dssp HHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHCTTB-H
T ss_pred HHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhHHH-H
Confidence 3445555555555 6777888866553 44532 11111111 1123489999999999997654334 7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 047934 244 FSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVD 286 (344)
Q Consensus 244 ~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~ 286 (344)
..|-..-.--.+.|+++.|.+++..-...+-+|. ..+...|.
T Consensus 95 Kiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~-~~le~a~~ 136 (161)
T 4h7y_A 95 FVHISFAQFELSQGNVKKSKQLLQKAVERGAVPL-EMLEIALR 136 (161)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCH-HHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcH-HHHHHHHH
Confidence 7888877777899999999999999888665543 33444443
No 239
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=69.12 E-value=14 Score=29.91 Aligned_cols=50 Identities=8% Similarity=0.095 Sum_probs=30.4
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 047934 223 KFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEA 272 (344)
Q Consensus 223 ~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~ 272 (344)
+.-+.++-++.+....+.|+.....+.+.+|-+-+++..|.++|+..+.+
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K 117 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 117 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 34455555555555566666666666666666666666666666665543
No 240
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=68.24 E-value=37 Score=32.24 Aligned_cols=124 Identities=15% Similarity=0.060 Sum_probs=81.8
Q ss_pred CHHHHHHHHHHHHHCCCC-C----CHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHcCCHHHHH
Q 047934 156 PPQEADEIFKKMKETGLI-P----NAVAMLDGLCKDGLIQEAMKLFGLMREK--GTIPEVVIYTAVVDGFCKAQKFDDAK 228 (344)
Q Consensus 156 ~~~~A~~lf~~M~~~gi~-p----~~~tli~~~~k~g~~~~A~~lf~~M~~~--g~~pd~~tyn~LI~ay~k~g~~e~A~ 228 (344)
.+++-.+......+.... . ....+-.-|.+.|+.++|.+.|.++... +...-...+-.+|..+...+++..+.
T Consensus 109 ~l~~l~~~~~~~~~~~~~e~e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~ 188 (429)
T 4b4t_R 109 KIKELNEKIQKLEEDDEGELEQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVK 188 (429)
T ss_dssp CHHHHHHHHHHHHHCCSCCCCCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHH
Confidence 355555555555553321 1 2236889999999999999999999875 34445678888999999999999999
Q ss_pred HHHHHHHHC---CCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 047934 229 RIFRKMQSN---GIAPNAF----SYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTF 281 (344)
Q Consensus 229 ~vf~~M~~~---gi~pd~~----tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty 281 (344)
....+.... +-.++.. .|..++ +...+++.+|...|-+....--..+..++
T Consensus 189 ~~~~ka~~~~~~~~d~~~~~~lk~~~gl~--~l~~r~f~~Aa~~f~e~~~t~~~~e~~~~ 246 (429)
T 4b4t_R 189 EKLEAVNSMIEKGGDWERRNRYKTYYGIH--CLAVRNFKEAAKLLVDSLATFTSIELTSY 246 (429)
T ss_dssp HHHHHHHHHHTTCCCTHHHHHHHHHHHHG--GGGTSCHHHHHHHHHHHHHHSCCSCHHHH
T ss_pred HHHHHHHHhhhcCCCHHHHHHHHHHHHHH--HHHhChHHHHHHHHHHHhccCCccchhhH
Confidence 999887542 3223322 222222 23468899998888887654333333333
No 241
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=67.94 E-value=27 Score=27.56 Aligned_cols=84 Identities=17% Similarity=0.124 Sum_probs=47.2
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHcCCCC--CHHHHHHHHHHHHHcCCHHH
Q 047934 222 QKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEE---AVEYCIEMLEAGHSP--NVTTFVGLVDGLCRERGVEK 296 (344)
Q Consensus 222 g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~---A~~lf~~M~~~gv~p--d~~ty~~lL~a~~~~G~~e~ 296 (344)
..+..+++-|......|. ++..+--.+-.++++.....+ ++.++++....+ .| .....-.|--+|.+.|++++
T Consensus 15 ~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHH
Confidence 344455555555544443 455555555556666665554 666666665543 12 22223345556677777777
Q ss_pred HHHHHHHHHHC
Q 047934 297 AQSVIATLKEK 307 (344)
Q Consensus 297 a~~l~~~M~~~ 307 (344)
|.+.++.+.+.
T Consensus 93 A~~~~~~lL~~ 103 (126)
T 1nzn_A 93 ALKYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 77777777654
No 242
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=66.14 E-value=22 Score=28.83 Aligned_cols=63 Identities=22% Similarity=0.251 Sum_probs=48.0
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 047934 188 LIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQ 251 (344)
Q Consensus 188 ~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ 251 (344)
+.-+..+-++.+....+.|+..+..+.+.+|-+..++..|.++|+.++.+ ..+...+|-.+|+
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lq 130 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 130 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHH
Confidence 34456666667777788999999999999999999999999999988765 2333445666654
No 243
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=65.23 E-value=94 Score=29.35 Aligned_cols=157 Identities=11% Similarity=0.059 Sum_probs=96.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHH
Q 047934 179 MLDGLCKDGLIQEAMKLFGLMREKGTIPE-----VVIYTAVVDGFCKAQKFDDAKRIFRKMQSN--GIAPNAFSYNLLIQ 251 (344)
Q Consensus 179 li~~~~k~g~~~~A~~lf~~M~~~g~~pd-----~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~--gi~pd~~tyn~LI~ 251 (344)
+...|...|++.+|.+++..+.+.--+.| ..+|-.-+.+|...+++.++...+...... .+.++..+- +.|+
T Consensus 105 L~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~-a~i~ 183 (394)
T 3txn_A 105 LIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ-GALD 183 (394)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH-HHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH-HHHH
Confidence 78899999999999999998876522222 456777888899999999999999876543 232333332 2233
Q ss_pred HH-----H-HcCCHHHHHHHHHHHHHc--CC-CC---CHHHHHHHHHHHHHcCCHHHHHHHHH-HHHHCCCcccHHHHHH
Q 047934 252 GL-----Y-KCNKLEEAVEYCIEMLEA--GH-SP---NVTTFVGLVDGLCRERGVEKAQSVIA-TLKEKGFLVNDKAVRE 318 (344)
Q Consensus 252 ay-----~-k~g~~~~A~~lf~~M~~~--gv-~p---d~~ty~~lL~a~~~~G~~e~a~~l~~-~M~~~Gi~p~~~~~~~ 318 (344)
.| . ..+++..|...|-+.... .+ .| +...|. +|.+... ++..+...++. .....--.|....+..
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYl-vL~aLl~-~~r~el~~~l~~~~~~~~~~pei~~l~~ 261 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYM-LLCKIML-GQSDDVNQLVSGKLAITYSGRDIDAMKS 261 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH-HHHHHHT-TCGGGHHHHHHSHHHHTTCSHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHH-HHHHHHc-CCHHHHHHHhccccccccCCccHHHHHH
Confidence 22 3 678999998887775421 11 11 122232 2222222 22222222222 2212124577777888
Q ss_pred HHhccCCCChHHHHHHhcCc
Q 047934 319 FLDKKAPFSSSVWEAIFGKK 338 (344)
Q Consensus 319 Ll~~yak~g~~~W~all~~~ 338 (344)
|+.+|....-..|..++...
T Consensus 262 L~~a~~~~dl~~f~~iL~~~ 281 (394)
T 3txn_A 262 VAEASHKRSLADFQAALKEY 281 (394)
T ss_dssp HHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHhCCHHHHHHHHHHH
Confidence 88888888888888877654
No 244
>3rjo_A Endoplasmic reticulum aminopeptidase 1; ERAP1, hydrolase; 2.30A {Homo sapiens}
Probab=62.97 E-value=1e+02 Score=28.96 Aligned_cols=78 Identities=13% Similarity=0.124 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHCC----CCCCHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 047934 157 PQEADEIFKKMKETG----LIPNAVAMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRIFR 232 (344)
Q Consensus 157 ~~~A~~lf~~M~~~g----i~p~~~tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf~ 232 (344)
.++|.++|++..+.+ +.|+....+-+.+-. ..++-..+++..... .+..--..++.+++...+.+...++++
T Consensus 216 ~~~A~~~f~~~~~~~~~~~i~~dlr~~Vy~~~~~-~~~~~~~l~~~y~~s---~~~~ek~~ll~aL~~s~d~~ll~~~L~ 291 (419)
T 3rjo_A 216 VQRAEGYFRKWKESNGNLSLPVDVTLAVFAVGAQ-STEGWDFLYSKYQFS---LSSTEKSQIEFALCRTQNKEKLQWLLD 291 (419)
T ss_dssp HHHHHHHHHHHHHTTTCSCCCGGGHHHHHHHHTT-SHHHHHHHHHHHHHC---CCHHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCCCCCCCCCcceeEEeeeeC-CHHHHHHHHHHHhcC---CCHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 556777777655432 455554443333322 233334444444443 345556677777777777777777777
Q ss_pred HHHHCC
Q 047934 233 KMQSNG 238 (344)
Q Consensus 233 ~M~~~g 238 (344)
......
T Consensus 292 ~~l~~~ 297 (419)
T 3rjo_A 292 ESFKGD 297 (419)
T ss_dssp HHHHTS
T ss_pred HHhCCC
Confidence 766544
No 245
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=61.57 E-value=47 Score=31.54 Aligned_cols=97 Identities=10% Similarity=0.043 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCCHHH---
Q 047934 209 VIYTAVVDGFCKAQKFDDAKRIFRKMQSN--GIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEA---GHSPNVTT--- 280 (344)
Q Consensus 209 ~tyn~LI~ay~k~g~~e~A~~vf~~M~~~--gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~---gv~pd~~t--- 280 (344)
.+...+-..|.++|++++|.++|.++... +..--+..|-.+|..+...+++..|.....+.... +-.++...
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 36677889999999999999999999875 33334567888999999999999999999887642 32333222
Q ss_pred -HHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 047934 281 -FVGLVDGLCRERGVEKAQSVIATLKEK 307 (344)
Q Consensus 281 -y~~lL~a~~~~G~~e~a~~l~~~M~~~ 307 (344)
|..+ .+...+++..|.+.|-+....
T Consensus 212 ~~~gl--~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 212 TYYGI--HCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHH--GGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHH--HHHHhChHHHHHHHHHHHhcc
Confidence 2211 123468899988888776543
No 246
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=61.01 E-value=22 Score=36.80 Aligned_cols=111 Identities=13% Similarity=0.038 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHHCCCCCCH---HHHHHHHHHcC-CHHHHHHHHHHHHHc------CCCC-CH----------HHHHHHH
Q 047934 157 PQEADEIFKKMKETGLIPNA---VAMLDGLCKDG-LIQEAMKLFGLMREK------GTIP-EV----------VIYTAVV 215 (344)
Q Consensus 157 ~~~A~~lf~~M~~~gi~p~~---~tli~~~~k~g-~~~~A~~lf~~M~~~------g~~p-d~----------~tyn~LI 215 (344)
.+.|..+|+++.+.+-..+. .++|..+.+.+ .--+|.++..+..+. ...+ +. ...+.-.
T Consensus 265 ~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~LL~~Qa 344 (754)
T 4gns_B 265 VDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDLLNIQT 344 (754)
T ss_dssp HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHHHHHHH
Confidence 57899999999886532111 12333333332 233455555444321 1111 21 1222334
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 047934 216 DGFCKAQKFDDAKRIFRKMQSNGIAPN-AFSYNLLIQGLYKCNKLEEAVEYCIEM 269 (344)
Q Consensus 216 ~ay~k~g~~e~A~~vf~~M~~~gi~pd-~~tyn~LI~ay~k~g~~~~A~~lf~~M 269 (344)
+-|...|+++.|+++-++.... .|+ -.+|-.|..+|.+.|+++.|+-.++.|
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~--aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTEL--ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHhccCcHHHHHHHHHHHHhc--CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 4466789999999999887664 555 569999999999999999999998887
No 247
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=60.01 E-value=40 Score=25.85 Aligned_cols=78 Identities=12% Similarity=0.048 Sum_probs=44.2
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 047934 188 LIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCI 267 (344)
Q Consensus 188 ~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~ 267 (344)
.-+||.-+-+++...+. ...+--+-+..+...|++++|..+.+.+. -||...|-+|-.. +.|..+++..-+.
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce~--rlGl~s~le~rL~ 93 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCEY--RLGLGSALESRLN 93 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHHH--HHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHHH--hcccHHHHHHHHH
Confidence 45566666666555543 11111122233456677777777665543 5677777766554 6677766666666
Q ss_pred HHHHcC
Q 047934 268 EMLEAG 273 (344)
Q Consensus 268 ~M~~~g 273 (344)
+|...|
T Consensus 94 ~la~sg 99 (116)
T 2p58_C 94 RLARSQ 99 (116)
T ss_dssp HHTTCC
T ss_pred HHHhCC
Confidence 665554
No 248
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=59.94 E-value=59 Score=31.07 Aligned_cols=156 Identities=13% Similarity=0.145 Sum_probs=98.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHc--CCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----CCCCCC--HHHHH
Q 047934 179 MLDGLCKDGLIQEAMKLFGLMREK--GTIPE---VVIYTAVVDGFCKAQKFDDAKRIFRKMQS----NGIAPN--AFSYN 247 (344)
Q Consensus 179 li~~~~k~g~~~~A~~lf~~M~~~--g~~pd---~~tyn~LI~ay~k~g~~e~A~~vf~~M~~----~gi~pd--~~tyn 247 (344)
|...|-..|++.+|..++.++... |.... +..|-..+..|...+++..|..++..+.. ....|+ ..-|.
T Consensus 143 La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~ 222 (445)
T 4b4t_P 143 LVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYN 222 (445)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHH
Confidence 678888999999999999998654 22111 46778889999999999999999998743 222222 24567
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc-CCCCCHHHHHHH----HHHHHHcCCHHHHHHHHHHHHHCCCcccHHHHHHHHhc
Q 047934 248 LLIQGLYKCNKLEEAVEYCIEMLEA-GHSPNVTTFVGL----VDGLCRERGVEKAQSVIATLKEKGFLVNDKAVREFLDK 322 (344)
Q Consensus 248 ~LI~ay~k~g~~~~A~~lf~~M~~~-gv~pd~~ty~~l----L~a~~~~G~~e~a~~l~~~M~~~Gi~p~~~~~~~Ll~~ 322 (344)
.++..+...+++.+|...|.+.... .+.-|...+..+ +.+..-.+....-..+..........++...+..|+++
T Consensus 223 ~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~ 302 (445)
T 4b4t_P 223 LLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKL 302 (445)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhcccccccHHHHHHHHH
Confidence 7888888899999998888877542 122243333222 22222233223333333333333333567778888888
Q ss_pred cCCCChHHHHHH
Q 047934 323 KAPFSSSVWEAI 334 (344)
Q Consensus 323 yak~g~~~W~al 334 (344)
|....-..|..+
T Consensus 303 f~~~~L~~~~~~ 314 (445)
T 4b4t_P 303 FTTNELMRWPIV 314 (445)
T ss_dssp HHHCCSSSHHHH
T ss_pred HHhchHhhhHHH
Confidence 766555445544
No 249
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=56.92 E-value=19 Score=30.11 Aligned_cols=139 Identities=10% Similarity=0.034 Sum_probs=69.7
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHHcCCHHH
Q 047934 154 SEPPQEADEIFKKMKETGLIPNA-----VAMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVI--YTAVVDGFCKAQKFDD 226 (344)
Q Consensus 154 sg~~~~A~~lf~~M~~~gi~p~~-----~tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~t--yn~LI~ay~k~g~~e~ 226 (344)
.|+.+.+..+++.+.+.+..++. .+.+...+..|..+ +++.+.+.|..++... ..+.+...+..|+.+-
T Consensus 19 ~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~ 94 (241)
T 1k1a_A 19 QGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPS----VVRLLVTAGASPMALDRHGQTAAHLACEHRSPTC 94 (241)
T ss_dssp TTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred cCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHH----HHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHH
Confidence 56777777777777766654432 25666667777765 4444555665543321 1234445566777776
Q ss_pred HHHHHHHHHHCCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH---HHHHHHHHHHcCCHHHHHHH
Q 047934 227 AKRIFRKMQSNGIAP---NAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTT---FVGLVDGLCRERGVEKAQSV 300 (344)
Q Consensus 227 A~~vf~~M~~~gi~p---d~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~t---y~~lL~a~~~~G~~e~a~~l 300 (344)
+..+++.....++.+ |...++.|.. .+..|..+- ++.+.+.|..++... -...|...+..|+.+.+..+
T Consensus 95 ~~~Ll~~~~~~~~~~~~~~~~g~t~L~~-A~~~~~~~~----~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~L 169 (241)
T 1k1a_A 95 LRALLDSAAPGTLDLEARNYDGLTALHV-AVNTECQET----VQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLL 169 (241)
T ss_dssp HHHHHHHSCTTSCCTTCCCTTSCCHHHH-HHHHTCHHH----HHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHcCCCccccccccCcCCCcHHHH-HHHcCCHHH----HHHHHHcCCCcccccccCCCcHHHHHHHcCCHHHHHHH
Confidence 666665533211121 2222233333 334455433 344444554443221 22344445566766544444
Q ss_pred H
Q 047934 301 I 301 (344)
Q Consensus 301 ~ 301 (344)
+
T Consensus 170 l 170 (241)
T 1k1a_A 170 L 170 (241)
T ss_dssp H
T ss_pred H
Confidence 3
No 250
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=56.72 E-value=39 Score=25.84 Aligned_cols=78 Identities=8% Similarity=0.008 Sum_probs=43.7
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 047934 188 LIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCI 267 (344)
Q Consensus 188 ~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~ 267 (344)
.-+||.-+-+++...+. ...+--+-+..+...|++++|..+.+.+. -||...|-+|-.. +.|..+++..-+.
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce~--rlGl~s~le~rL~ 92 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALCEW--HLGLGAALDRRLA 92 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHHH--HTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHHH--hcccHHHHHHHHH
Confidence 45556555555555433 11111122233456677777776665443 5677777666554 6677777766666
Q ss_pred HHHHcC
Q 047934 268 EMLEAG 273 (344)
Q Consensus 268 ~M~~~g 273 (344)
+|...|
T Consensus 93 ~la~sg 98 (115)
T 2uwj_G 93 GLGGSS 98 (115)
T ss_dssp HHHTCS
T ss_pred HHHhCC
Confidence 666554
No 251
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=49.81 E-value=98 Score=26.93 Aligned_cols=90 Identities=8% Similarity=0.022 Sum_probs=57.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHc--CCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 047934 179 MLDGLCKDGLIQEAMKLFGLMREK--GTIP----EVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQG 252 (344)
Q Consensus 179 li~~~~k~g~~~~A~~lf~~M~~~--g~~p----d~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~a 252 (344)
-|+.+....++++|.++.++..+. +++. +.......|..-.....-..+..+.+.+.. ..+...-...+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHH
Confidence 688999999999999999877643 3332 112223334443444444555566666633 4456666777788
Q ss_pred HHHcCCHHHHHHHHHHHHH
Q 047934 253 LYKCNKLEEAVEYCIEMLE 271 (344)
Q Consensus 253 y~k~g~~~~A~~lf~~M~~ 271 (344)
+.+.|..++|.++|-+...
T Consensus 101 L~rLg~~~~A~~lfL~~rs 119 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQNRS 119 (235)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHHHHH
Confidence 8888888888888877654
No 252
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=47.84 E-value=1.3e+02 Score=25.75 Aligned_cols=74 Identities=15% Similarity=0.101 Sum_probs=51.6
Q ss_pred CCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 047934 204 TIPEVVIYTAVVDGFCK--AQKFDDAKRIFRKMQSNGIAPN-AFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPN 277 (344)
Q Consensus 204 ~~pd~~tyn~LI~ay~k--~g~~e~A~~vf~~M~~~gi~pd-~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd 277 (344)
.+-|..-...-|..--. ++...++..+|..|..+||.-. +.-|-..-..+-..|++++|.++|+.-.+.+-+|-
T Consensus 73 YkND~RYLklWl~Ya~~~~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 73 YRNDPRFLKIWIWYINLFLSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY 149 (202)
T ss_dssp GTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred ccCCHHHHHHHHHHHHhhcccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 44465444444432222 4457789999999988877644 45566777777788999999999998888877773
No 253
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=47.56 E-value=1.4e+02 Score=25.90 Aligned_cols=80 Identities=14% Similarity=0.060 Sum_probs=50.4
Q ss_pred CCCHHHHHHHHHHHHH--CCCCCC---H----HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 047934 154 SEPPQEADEIFKKMKE--TGLIPN---A----VAMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKF 224 (344)
Q Consensus 154 sg~~~~A~~lf~~M~~--~gi~p~---~----~tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~ 224 (344)
..++++|..+.++..+ .++... . ...+..-.....-.-+..+.+++.. ..+.......+..+.+.|..
T Consensus 31 ~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~~L~rLg~~ 107 (235)
T 2d2s_A 31 RLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTENMIKLGLP 107 (235)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHHHHHHTTCH
T ss_pred HHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCh
Confidence 4578999999987665 233321 1 1234444444444455555555533 45667777788889999999
Q ss_pred HHHHHHHHHHHH
Q 047934 225 DDAKRIFRKMQS 236 (344)
Q Consensus 225 e~A~~vf~~M~~ 236 (344)
++|.++|=+...
T Consensus 108 ~~A~~lfL~~rs 119 (235)
T 2d2s_A 108 EQALDLFLQNRS 119 (235)
T ss_dssp HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 999999966543
No 254
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=47.38 E-value=59 Score=30.12 Aligned_cols=18 Identities=22% Similarity=0.364 Sum_probs=8.8
Q ss_pred HHHHHHHcCCHHHHHHHH
Q 047934 214 VVDGFCKAQKFDDAKRIF 231 (344)
Q Consensus 214 LI~ay~k~g~~e~A~~vf 231 (344)
+..=|.+.+++++|.+++
T Consensus 41 i~~Ry~~~k~y~eAidLL 58 (336)
T 3lpz_A 41 VAARYSKQGNWAAAVDIL 58 (336)
T ss_dssp HHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHH
Confidence 333355555555555543
No 255
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=45.87 E-value=2e+02 Score=30.19 Aligned_cols=77 Identities=10% Similarity=0.042 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHCC----CCCCHH-HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 047934 157 PQEADEIFKKMKETG----LIPNAV-AMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRIF 231 (344)
Q Consensus 157 ~~~A~~lf~~M~~~g----i~p~~~-tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf 231 (344)
.++|.+.|++....+ +.|++. ++...-.+.|..++-..+++.+.... +..--..++.+++...+.+...+++
T Consensus 705 ~~~a~~~f~~~~~~~~~~~i~~dlr~~vy~~~~~~g~~~~~~~l~~~~~~~~---~~~ek~~ll~aL~~~~d~~~l~~~L 781 (909)
T 4fke_A 705 ENLAKTLFDQWMSDPENNPIHPNLRSTIYCNAIAQGGQDQWDFAWGQLQQAQ---LVNEADKLRSALACSNEVWLLNRYL 781 (909)
T ss_dssp HHHHHHHHHHHHTCTTSCCSCTTTHHHHHHHHHHHSCHHHHHHHHHHHHHCC---SHHHHHHHHHHHTTCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCCCCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHccC---CHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 456777777655421 455554 33444445666666666666666542 3444566777777777777777777
Q ss_pred HHHHH
Q 047934 232 RKMQS 236 (344)
Q Consensus 232 ~~M~~ 236 (344)
+....
T Consensus 782 ~~~l~ 786 (909)
T 4fke_A 782 GYTLN 786 (909)
T ss_dssp HHTTC
T ss_pred HHHhC
Confidence 76654
No 256
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=45.48 E-value=2e+02 Score=27.18 Aligned_cols=153 Identities=12% Similarity=0.090 Sum_probs=88.7
Q ss_pred CCCHHHHHHHHHHHHHC-----CCCCC---HHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCC-----------------
Q 047934 154 SEPPQEADEIFKKMKET-----GLIPN---AVAMLDGLCKDGLIQEAMKLFGLMREK-GTIPE----------------- 207 (344)
Q Consensus 154 sg~~~~A~~lf~~M~~~-----gi~p~---~~tli~~~~k~g~~~~A~~lf~~M~~~-g~~pd----------------- 207 (344)
.|+++.|++.+-.+... +..-+ ...++..|...++++...+.+..+.+. |....
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC
Confidence 46788998888776642 12211 125888899999998876666554322 22111
Q ss_pred ---H-------------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCC---HHHHHHHHHHHH
Q 047934 208 ---V-------------------------VIYTAVVDGFCKAQKFDDAKRIFRKMQSN--GIAPN---AFSYNLLIQGLY 254 (344)
Q Consensus 208 ---~-------------------------~tyn~LI~ay~k~g~~e~A~~vf~~M~~~--gi~pd---~~tyn~LI~ay~ 254 (344)
. ...-.|...|-..|++.+|..++..+... |.... +..|...+..|.
T Consensus 109 ~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l 188 (445)
T 4b4t_P 109 SLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSI 188 (445)
T ss_dssp TTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 1 11134556666777777777777776543 11111 345666677777
Q ss_pred HcCCHHHHHHHHHHHHH----cCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 047934 255 KCNKLEEAVEYCIEMLE----AGHSPNV--TTFVGLVDGLCRERGVEKAQSVIATLKE 306 (344)
Q Consensus 255 k~g~~~~A~~lf~~M~~----~gv~pd~--~ty~~lL~a~~~~G~~e~a~~l~~~M~~ 306 (344)
..+++..|..++.+... ....|+. .-|...+..+...+++.+|-+.|.+...
T Consensus 189 ~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 189 LKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 77777777777776532 1112221 2345556666667777777666665543
No 257
>2xdt_A Endoplasmic reticulum aminopeptidase 1; glycoprotein, metal-binding, metalloprotease, protease, hydrolase, adaptive immunity; HET: NAG; 2.70A {Homo sapiens} PDB: 2yd0_A* 3qnf_A* 3mdj_A*
Probab=45.46 E-value=2.5e+02 Score=29.38 Aligned_cols=76 Identities=13% Similarity=0.117 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHC----CCCCCHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 047934 157 PQEADEIFKKMKET----GLIPNAVAMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRIFR 232 (344)
Q Consensus 157 ~~~A~~lf~~M~~~----gi~p~~~tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf~ 232 (344)
.++|.+.|++.... .+.|++...+-+.+- |..++-..+++.+.+. .+..--..++.+++...+.+...++++
T Consensus 699 ~~~a~~~f~~~~~~~~~~~i~~~lr~~vy~~~~-g~~~~~~~l~~~y~~~---~~~~ek~~ll~aL~c~~~~~~l~~~L~ 774 (897)
T 2xdt_A 699 VQRAEGYFRKWKESNGNLSLPVDVTLAVFAVGA-QSTEGWDFLYSKYQFS---LSSTEKSQIEFALCRTQNKEKLQWLLD 774 (897)
T ss_dssp HHHHHHHHHHHHHTTTCSCCCHHHHHHHHHHHT-TSHHHHHHHHHHHTTC---CCHHHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCcCCCCcchhhhEEEEec-CCHHHHHHHHHHHHcc---CCHHHHHHHHHHhccCCCHHHHHHHHH
Confidence 45566666655443 233444333333332 5444434444444332 233444566677777777766666666
Q ss_pred HHHH
Q 047934 233 KMQS 236 (344)
Q Consensus 233 ~M~~ 236 (344)
....
T Consensus 775 ~~~~ 778 (897)
T 2xdt_A 775 ESFK 778 (897)
T ss_dssp HHHH
T ss_pred HHhC
Confidence 6654
No 258
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=45.15 E-value=68 Score=25.07 Aligned_cols=65 Identities=5% Similarity=0.189 Sum_probs=34.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHcCCCC
Q 047934 211 YTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNK--LEEAVEYCIEMLEAGHSP 276 (344)
Q Consensus 211 yn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~--~~~A~~lf~~M~~~gv~p 276 (344)
.+.+|.-|...|+.++|.+.++++..-.. -..++..++..++=+.+. .+.+.+++..+...|+-+
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f-~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is 76 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 76 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCcc-HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 45677777777777777777777642110 012333344444443321 345566666666555443
No 259
>1yii_A Annexin A5, annexin V, lipocortin V, endonexin II; membrane binding, matrix vessicle, protein and metal binding protein; 1.42A {Gallus gallus} PDB: 1yj0_A 1ala_A 1hvd_A 1anx_A 1anw_A 1avh_A 1avr_A 1hak_B* 1hvf_A 1hve_A 1hvg_A 1a8a_A* 1a8b_A* 2ie7_A 1g5n_A 2ie6_A 1bcz_A 1n41_A 1bcw_A 2ran_A ...
Probab=43.22 E-value=1.9e+02 Score=26.18 Aligned_cols=156 Identities=15% Similarity=0.180 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHcCC--HHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHHcCCHHHHHH
Q 047934 157 PQEADEIFKKMKETGLIPNAVAMLDGLCKDGL--IQEAMKLFGLMREKGTIPE-----VVIYTAVVDGFCKAQKFDDAKR 229 (344)
Q Consensus 157 ~~~A~~lf~~M~~~gi~p~~~tli~~~~k~g~--~~~A~~lf~~M~~~g~~pd-----~~tyn~LI~ay~k~g~~e~A~~ 229 (344)
-.+|..+.+.|...| .+..++|..++.... ..+..+.|..+-...+.-+ .--|-.+|-++.....-.+|..
T Consensus 17 ~~Da~~L~~A~kG~G--tde~~lieIL~~rs~~q~~~I~~~Y~~~~g~~L~~dl~~e~sG~f~~ll~~l~~~~~~~DA~~ 94 (320)
T 1yii_A 17 RADAEALRKAMKGMG--TDEETILKILTSRNNAQRQEIASAFKTLFGRDLVDDLKSELTGKFETLMVSLMRPARIFDAHA 94 (320)
T ss_dssp HHHHHHHHHHHSSSS--CCHHHHHHHHHHSCHHHHHHHHHHHHHHHSCCHHHHHHHHCCHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHhcCCC--CCHHHHHHHHhcCCHHHHHHHHHHHHHHHCcCHHHHHhhhcCchHHHHHHHHccChHHHHHHH
Confidence 468999999996554 478889999888753 3345555655543322111 1246667777777666788999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHcCCCCCH-----HHHHHHHHHHHHcCC---------
Q 047934 230 IFRKMQSNGIAPNAFSYNLLIQGLYKCN--KLEEAVEYCIEMLEAGHSPNV-----TTFVGLVDGLCRERG--------- 293 (344)
Q Consensus 230 vf~~M~~~gi~pd~~tyn~LI~ay~k~g--~~~~A~~lf~~M~~~gv~pd~-----~ty~~lL~a~~~~G~--------- 293 (344)
+++.|... ..|.. ++|..++... ++....+.|..+-...+.-+. -.|.-++.+.+...+
T Consensus 95 L~~A~kg~--Gtde~---~lieIL~~Rs~~ql~~I~~aY~~~y~~~Le~di~~e~sG~~~~~l~~l~~~~r~~~~~vd~~ 169 (320)
T 1yii_A 95 LKHAIKGA--GTNEK---VLTEILASRTPAEVQNIKQVYMQEYEANLEDKITGETSGHFQRLLVVLLQANRDPDGRVDEA 169 (320)
T ss_dssp HHHHHSSS--SCCHH---HHHHHHHHSCHHHHHHHHHHHHHHHSSCHHHHHHHHCCHHHHHHHHHHHTTCCCCSCCCCHH
T ss_pred HHHHhccC--CCchH---HHhHHHhcCCHHHHHHHHHHHHHhhCcCHHHHHHhhcCCcHHHHHHHHHhhccCccccCCch
Confidence 99998543 34554 4455555433 344555555555433221111 124445555554332
Q ss_pred --HHHHHHHHHHHHHCCCcccHHHHHHHH
Q 047934 294 --VEKAQSVIATLKEKGFLVNDKAVREFL 320 (344)
Q Consensus 294 --~e~a~~l~~~M~~~Gi~p~~~~~~~Ll 320 (344)
-..|..+++.|.. ++..|..++..++
T Consensus 170 ~a~~dA~~L~~A~~~-~~Gtde~~li~Il 197 (320)
T 1yii_A 170 LVEKDAQVLFRAGEL-KWGTDEETFITIL 197 (320)
T ss_dssp HHHHHHHHHHHHHHT-TTCSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc-CCCCCHHHHHHHH
Confidence 1347777777763 3445655555554
No 260
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=43.17 E-value=22 Score=29.72 Aligned_cols=88 Identities=9% Similarity=-0.001 Sum_probs=53.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH--HHHHHHH
Q 047934 178 AMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVI--YTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSY--NLLIQGL 253 (344)
Q Consensus 178 tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~t--yn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~ty--n~LI~ay 253 (344)
+.|...++.|+.+.+..+++.+.+.|..++... ..+.+...+..|+.+-+. .+.+.|..++.... .+.+...
T Consensus 11 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~----~Ll~~g~~~~~~~~~g~t~l~~A 86 (241)
T 1k1a_A 11 TPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVR----LLVTAGASPMALDRHGQTAAHLA 86 (241)
T ss_dssp CHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHH----HHHHTTCCTTCCCTTSCCHHHHH
T ss_pred cHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHH----HHHHcCCCccccCCCCCCHHHHH
Confidence 456777888999998888888777776554321 223455556778776444 44456665543221 2334445
Q ss_pred HHcCCHHHHHHHHHHH
Q 047934 254 YKCNKLEEAVEYCIEM 269 (344)
Q Consensus 254 ~k~g~~~~A~~lf~~M 269 (344)
+..|..+-+..+++..
T Consensus 87 ~~~~~~~~~~~Ll~~~ 102 (241)
T 1k1a_A 87 CEHRSPTCLRALLDSA 102 (241)
T ss_dssp HHTTCHHHHHHHHHHS
T ss_pred HHcCCHHHHHHHHHcC
Confidence 5678877666665554
No 261
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=42.02 E-value=2.1e+02 Score=30.76 Aligned_cols=113 Identities=9% Similarity=0.018 Sum_probs=74.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCC-----------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 047934 179 MLDGLCKDGLIQEAMKLFGLMREKGTIP-----------------------EVVIYTAVVDGFCKAQKFDDAKRIFRKMQ 235 (344)
Q Consensus 179 li~~~~k~g~~~~A~~lf~~M~~~g~~p-----------------------d~~tyn~LI~ay~k~g~~e~A~~vf~~M~ 235 (344)
+-.+|...|++++|.++|...- .|+.. -..=|.-++..+-+.+.++.+.++-....
T Consensus 848 ~g~~~L~~ge~~~A~~~F~kaa-~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi 926 (1139)
T 4fhn_B 848 KALIYLKSKEAVKAVRCFKTTS-LVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLAD 926 (1139)
T ss_dssp HHHHHHHTTCHHHHHHHHHTCC-CSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHh-hhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3455667899999999996531 11111 12336677888888888888877766544
Q ss_pred HC-CCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 047934 236 SN-GIAPN---AFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRERGV 294 (344)
Q Consensus 236 ~~-gi~pd---~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~~ 294 (344)
+. +-..+ ...|..+..++...|++++|...+-.+.....+ ......||..+|..|.+
T Consensus 927 ~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r--~~cLr~LV~~lce~~~~ 987 (1139)
T 4fhn_B 927 ASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK--KSCLLDFVNQLTKQGKI 987 (1139)
T ss_dssp HHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC--HHHHHHHHHHHHHHCCH
T ss_pred HhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH--HHHHHHHHHHHHhCCCh
Confidence 43 21211 226889999999999999999888888776544 34555566666655543
No 262
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=40.90 E-value=1.1e+02 Score=28.03 Aligned_cols=18 Identities=6% Similarity=0.512 Sum_probs=8.7
Q ss_pred HHHHHHHcCCHHHHHHHH
Q 047934 214 VVDGFCKAQKFDDAKRIF 231 (344)
Q Consensus 214 LI~ay~k~g~~e~A~~vf 231 (344)
+..=|.+.+++++|.+++
T Consensus 39 l~~Ry~~~~~~~eAidlL 56 (312)
T 2wpv_A 39 IANRYVRSKSYEHAIELI 56 (312)
T ss_dssp HHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHH
Confidence 333355555555555544
No 263
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=39.84 E-value=52 Score=26.68 Aligned_cols=70 Identities=4% Similarity=0.133 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHcCCCCCHHH
Q 047934 210 IYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNK--LEEAVEYCIEMLEAGHSPNVTT 280 (344)
Q Consensus 210 tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~--~~~A~~lf~~M~~~gv~pd~~t 280 (344)
..+.+|.-|...|+.++|.+.++++..-.. -..++..++..++=+.+. .+.+..++..+...|+-+....
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~f-~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q~ 82 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQM 82 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCcc-hHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHH
Confidence 457788888888999999999988852111 123344455555544322 4567777777777765544433
No 264
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=39.71 E-value=21 Score=29.43 Aligned_cols=154 Identities=10% Similarity=0.067 Sum_probs=85.6
Q ss_pred CCCHHHHHHHHHHHHHCCCCC-C-H--HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH---HHHHHHHHHHHc-CCHH
Q 047934 154 SEPPQEADEIFKKMKETGLIP-N-A--VAMLDGLCKDGLIQEAMKLFGLMREKGTIPEVV---IYTAVVDGFCKA-QKFD 225 (344)
Q Consensus 154 sg~~~~A~~lf~~M~~~gi~p-~-~--~tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~---tyn~LI~ay~k~-g~~e 225 (344)
.|+++....++.. ++.. + . .|.|...+..|..+.-.++.+.+.+.|..++.. -++.|.-++... .+..
T Consensus 16 ~g~~~~~~~l~~~----~~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~~ 91 (186)
T 3t8k_A 16 LGTYEDFLELFEK----GYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDIT 91 (186)
T ss_dssp HSCHHHHHHHHHH----SSSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTCHH
T ss_pred cCCHHHHHHHHhc----CcccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcchh
Confidence 4666665555543 3321 1 1 145666667777777777788888888766543 234444443332 2345
Q ss_pred HHHHHHHHHHHCCCCCCHH---HHHHHHHHHHHcCCH-HHHHHHHHHHHH-cCCCCCHHHH--HHHHHHHHHcCCHHHHH
Q 047934 226 DAKRIFRKMQSNGIAPNAF---SYNLLIQGLYKCNKL-EEAVEYCIEMLE-AGHSPNVTTF--VGLVDGLCRERGVEKAQ 298 (344)
Q Consensus 226 ~A~~vf~~M~~~gi~pd~~---tyn~LI~ay~k~g~~-~~A~~lf~~M~~-~gv~pd~~ty--~~lL~a~~~~G~~e~a~ 298 (344)
...++.+.+.+.|..++.. -.++.+...+..+.. ....++++.+.+ .|..++.... .+.|...++.|..+.+.
T Consensus 92 ~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~~~~~~~v~ 171 (186)
T 3t8k_A 92 GTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALK 171 (186)
T ss_dssp HHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHTTTCHHHHH
T ss_pred hHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHHHcCCHHHHH
Confidence 5567777788888776643 221223222333332 344566667777 6766554332 13445556677777666
Q ss_pred HHHHHHHHCCCcc
Q 047934 299 SVIATLKEKGFLV 311 (344)
Q Consensus 299 ~l~~~M~~~Gi~p 311 (344)
-+.+.+.+.+++.
T Consensus 172 ~L~~~~~~~~~~~ 184 (186)
T 3t8k_A 172 MMEDYIKKYNLKE 184 (186)
T ss_dssp HHHHHHHHHTCCC
T ss_pred HHHHHHHHHhccc
Confidence 6666666666553
No 265
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=39.06 E-value=78 Score=24.23 Aligned_cols=76 Identities=14% Similarity=0.155 Sum_probs=60.5
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHH--HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 047934 156 PPQEADEIFKKMKETGLIPNAVAMLDG--LCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRIFRK 233 (344)
Q Consensus 156 ~~~~A~~lf~~M~~~gi~p~~~tli~~--~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~ 233 (344)
..++|.-+-+.+...+. -..++||+. +...|++++|..+.+.+ .-||...|-+|-. .+.|..++++.-+.+
T Consensus 22 ~HqEA~tIAdwL~~~~~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALce--~rlGl~s~le~rL~~ 94 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE-EEAVQLIRLSSLMNRGDYASALQQGNKL----AYPDLEPWLALCE--YRLGLGSALESRLNR 94 (116)
T ss_dssp CHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHTTCHHHHHHHHTTS----CCGGGHHHHHHHH--HHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHHH--HhcccHHHHHHHHHH
Confidence 47899999999998887 456677665 55789999999877654 4799999988866 588999999888888
Q ss_pred HHHCC
Q 047934 234 MQSNG 238 (344)
Q Consensus 234 M~~~g 238 (344)
|...|
T Consensus 95 la~sg 99 (116)
T 2p58_C 95 LARSQ 99 (116)
T ss_dssp HTTCC
T ss_pred HHhCC
Confidence 87665
No 266
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=37.05 E-value=43 Score=27.47 Aligned_cols=128 Identities=13% Similarity=0.127 Sum_probs=75.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHH-
Q 047934 181 DGLCKDGLIQEAMKLFGLMREKGTIPEV-VIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAF---SYNLLIQGLYK- 255 (344)
Q Consensus 181 ~~~~k~g~~~~A~~lf~~M~~~g~~pd~-~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~---tyn~LI~ay~k- 255 (344)
...++.|+.++...++. .+..... ..-.+.|...+..|+.+.-.++.+.+.+.|..++.. -++.|..++..
T Consensus 11 ~~Aa~~g~~~~~~~l~~----~~~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~ 86 (186)
T 3t8k_A 11 SAAAMLGTYEDFLELFE----KGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGG 86 (186)
T ss_dssp HHHHHHSCHHHHHHHHH----HSSSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHC
T ss_pred HHHHHcCCHHHHHHHHh----cCcccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcC
Confidence 34467788888666554 3332111 223455666677788777778888888998877653 34455544433
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHH---HHHHHHHHHHcCCH-HHHHHHHHHHHH-CCCccc
Q 047934 256 CNKLEEAVEYCIEMLEAGHSPNVTT---FVGLVDGLCRERGV-EKAQSVIATLKE-KGFLVN 312 (344)
Q Consensus 256 ~g~~~~A~~lf~~M~~~gv~pd~~t---y~~lL~a~~~~G~~-e~a~~l~~~M~~-~Gi~p~ 312 (344)
........++.+.+.+.|..++... .++.|...+..+.. ....++++.+.+ .|..++
T Consensus 87 ~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~ 148 (186)
T 3t8k_A 87 GNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLL 148 (186)
T ss_dssp TTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTT
T ss_pred CcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCc
Confidence 2345556677888888887766433 21233333333432 345567777777 776665
No 267
>1w3w_A Annexin A8; coagulation, annexin family, calcium and phospholipid binding proteins; 1.99A {Homo sapiens} PDB: 1w45_A
Probab=37.02 E-value=2.4e+02 Score=25.62 Aligned_cols=156 Identities=17% Similarity=0.139 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHcCC--HHHHHHHHHHHHHcCCCCCH-----HHHHHHHHHHHHcCCHHHHHH
Q 047934 157 PQEADEIFKKMKETGLIPNAVAMLDGLCKDGL--IQEAMKLFGLMREKGTIPEV-----VIYTAVVDGFCKAQKFDDAKR 229 (344)
Q Consensus 157 ~~~A~~lf~~M~~~gi~p~~~tli~~~~k~g~--~~~A~~lf~~M~~~g~~pd~-----~tyn~LI~ay~k~g~~e~A~~ 229 (344)
-.+|..+.+.|...| .+..+||..++.... ..+..+.|..+-...+.-+. --|-.+|-++...---.+|..
T Consensus 24 ~~DA~~L~kA~kG~G--tdE~~lieIL~~Rs~~q~~~I~~aY~~~yg~~L~~dlkse~sG~f~~ll~~l~~~~~~~DA~~ 101 (327)
T 1w3w_A 24 DPDAETLYKAMKGIG--TNEQAIIDVLTKRSNTQRQQIAKSFKAQFGKDLTETLKSELSGKFERLIVALMYPPYRYEAKE 101 (327)
T ss_dssp HHHHHHHHHHHSSSS--CCHHHHHHHHTTSCHHHHHHHHHHHHHHHSSCHHHHHHHHCCHHHHHHHHHHHSCTTHHHHHH
T ss_pred HHHHHHHHHHhcCCC--CCHHHHHHHHhcCCHHHHHHHHHHHHHHHCcCHHHHHHHHcCCcHHHHHHHhcCCHHHHHHHH
Confidence 568999999996544 478889998887653 33455555555433221111 235667777777666788999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHcCCCCCH-----HHHHHHHHHHHHcCCH--------
Q 047934 230 IFRKMQSNGIAPNAFSYNLLIQGLYKCN--KLEEAVEYCIEMLEAGHSPNV-----TTFVGLVDGLCRERGV-------- 294 (344)
Q Consensus 230 vf~~M~~~gi~pd~~tyn~LI~ay~k~g--~~~~A~~lf~~M~~~gv~pd~-----~ty~~lL~a~~~~G~~-------- 294 (344)
+++.|... ..|..+ +|..++... ++....+.|..+-...+.-+. -.|.-+|.+.++..+-
T Consensus 102 L~~A~~g~--Gtde~~---lieIL~tRs~~ql~~i~~~Y~~~yg~sLe~dI~~e~sG~~~~~L~~lv~~~r~~~~~~vd~ 176 (327)
T 1w3w_A 102 LHDAMKGL--GTKEGV---IIEILASRTKNQLREIMKAYEEDYGSSLEEDIQADTSGYLERILVCLLQGSRDDVSSFVDP 176 (327)
T ss_dssp HHHHHHSS--SCCHHH---HHHHHHHSCHHHHHHHHHHHHHHHSSCHHHHHHHHCCHHHHHHHHHHHSCCCCCCCSCCCH
T ss_pred HHHHhhcc--CCCHHH---HHHHHHhCCHHHHHHHHHHHHHHhCccHHHHHhhccCchHHHHHHHHHHhccCCcccccCH
Confidence 99999854 345544 444444433 344555555555433222111 1245555555543221
Q ss_pred ----HHHHHHHHHHHHCCCcccHHHHHHHH
Q 047934 295 ----EKAQSVIATLKEKGFLVNDKAVREFL 320 (344)
Q Consensus 295 ----e~a~~l~~~M~~~Gi~p~~~~~~~Ll 320 (344)
.+|..+++.|.. ++..|..++..+|
T Consensus 177 ~~a~~DA~~L~~A~~~-~~GTde~~lirIl 205 (327)
T 1w3w_A 177 ALALQDAQDLYAAGEK-IRGTDEMKFITIL 205 (327)
T ss_dssp HHHHHHHHHHHHHHHC-SSSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhC-cCCCcHhHhhHHH
Confidence 247777777653 3445655555554
No 268
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=36.46 E-value=93 Score=24.56 Aligned_cols=59 Identities=19% Similarity=0.122 Sum_probs=35.4
Q ss_pred HHHHCCCCCCHH--HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 047934 166 KMKETGLIPNAV--AMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKF 224 (344)
Q Consensus 166 ~M~~~gi~p~~~--tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~ 224 (344)
.|.++|++.+.. .++..+...+..-.|.++++.+.+.+...+..|.=--|+.+.+.|-+
T Consensus 12 ~l~~~g~r~T~qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 12 TLKETGVRITPQRHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHHTTCCCCHHHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHcCCCCCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCE
Confidence 455667665543 56666666655566777777776665555555555555555555543
No 269
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=35.35 E-value=76 Score=24.25 Aligned_cols=76 Identities=17% Similarity=0.118 Sum_probs=60.7
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHH--HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 047934 156 PPQEADEIFKKMKETGLIPNAVAMLDG--LCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRIFRK 233 (344)
Q Consensus 156 ~~~~A~~lf~~M~~~gi~p~~~tli~~--~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~ 233 (344)
..++|.-+-+.+...+. -..++||+. +...|++++|..+.+.+ .-||...|-+|-. .+.|..++++.-+.+
T Consensus 21 ~HqEA~tIAdwL~~~~~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALce--~rlGl~s~le~rL~~ 93 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ-DEAARLIRISSLANQGRYQEALAFAHGN----PWPALEPWFALCE--WHLGLGAALDRRLAG 93 (115)
T ss_dssp CHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHTTCHHHHHGGGTTC----CCGGGHHHHHHHH--HHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHHH--HhcccHHHHHHHHHH
Confidence 47899999999988877 456677665 55789999999876554 4789999988866 589999999998888
Q ss_pred HHHCC
Q 047934 234 MQSNG 238 (344)
Q Consensus 234 M~~~g 238 (344)
|...|
T Consensus 94 la~sg 98 (115)
T 2uwj_G 94 LGGSS 98 (115)
T ss_dssp HHTCS
T ss_pred HHhCC
Confidence 87765
No 270
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=34.85 E-value=1.6e+02 Score=23.61 Aligned_cols=62 Identities=15% Similarity=0.148 Sum_probs=42.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHCCC
Q 047934 177 VAMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQK--FDDAKRIFRKMQSNGI 239 (344)
Q Consensus 177 ~tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~--~e~A~~vf~~M~~~gi 239 (344)
..+|.-|...|+.++|.+.++++..-.+ ....+..++..++-+.+. .+.+..++..+...|+
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~~p~f-~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~ 76 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSST 76 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCCcc-hHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCC
Confidence 4799999999999999999999853211 234555666666655432 4567777777776643
No 271
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=34.70 E-value=56 Score=29.36 Aligned_cols=59 Identities=17% Similarity=0.143 Sum_probs=31.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 047934 178 AMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIA 240 (344)
Q Consensus 178 tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~ 240 (344)
|.|...+..|..+-+ +.+.+.|..++.....+.|...+..|+.+-+..+++.....|..
T Consensus 55 t~L~~A~~~g~~~~v----~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~ 113 (364)
T 3ljn_A 55 TALHLACKFGCVDTA----KYLASVGEVHSLWHGQKPIHLAVMANKTDLVVALVEGAKERGQM 113 (364)
T ss_dssp CHHHHHHHHCCHHHH----HHHHHHCCCCCCBTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCC
T ss_pred cHHHHHHHcCCHHHH----HHHHHCCCCccccCCCCHHHHHHHcCCHHHHHHHHHhccccCCC
Confidence 455556666766543 34444454444322333444456677777777777665444433
No 272
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=34.69 E-value=1.3e+02 Score=24.63 Aligned_cols=73 Identities=10% Similarity=0.095 Sum_probs=50.6
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH
Q 047934 204 TIPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPN-AFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVT 279 (344)
Q Consensus 204 ~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd-~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ 279 (344)
.+-|..-...-|. |++.- +++..+|..|..+||.-. +.-|-..-..|-..|++.+|.++|..-.+.+-+|-..
T Consensus 59 YknD~RyLklWl~-ya~~~--~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~ 132 (164)
T 2wvi_A 59 YYSDPRFLNLWLK-LGRLC--NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLER 132 (164)
T ss_dssp GTTCHHHHHHHHH-HHHHC--SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred hccCHHHHHHHHH-HHHhc--CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH
Confidence 4556665555553 33322 457788999988887644 4456666666777899999999999888887777543
No 273
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=34.07 E-value=1.6e+02 Score=24.24 Aligned_cols=52 Identities=6% Similarity=0.072 Sum_probs=29.6
Q ss_pred HHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCcccH
Q 047934 262 AVEYCIEMLEAGHSPN-VTTFVGLVDGLCRERGVEKAQSVIATLKEKGFLVND 313 (344)
Q Consensus 262 A~~lf~~M~~~gv~pd-~~ty~~lL~a~~~~G~~e~a~~l~~~M~~~Gi~p~~ 313 (344)
+.++|..|...|+--. ..-|...-..+...|++.+|.+|+..=++.+-.|-.
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~ 131 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLE 131 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Confidence 4556666666655332 334445555555566666666666666666655553
No 274
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=33.87 E-value=1e+02 Score=24.56 Aligned_cols=60 Identities=13% Similarity=0.154 Sum_probs=33.6
Q ss_pred HHHHHCCCCCCHH--HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 047934 165 KKMKETGLIPNAV--AMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKF 224 (344)
Q Consensus 165 ~~M~~~gi~p~~~--tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~ 224 (344)
+.|.++|++++.. .++..+...+..-.|.++++.+.+.+...+..|.=--|+.+.+.|-+
T Consensus 16 ~~l~~~g~r~T~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 16 MSIKKNGLKNSKQREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHHHCC--CHHHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 3455667665432 56666666655666777777776665555555544445555555543
No 275
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=33.87 E-value=80 Score=24.62 Aligned_cols=58 Identities=17% Similarity=0.142 Sum_probs=31.4
Q ss_pred HHHCCCCCCHH--HHHHHHHHcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 047934 167 MKETGLIPNAV--AMLDGLCKDG-LIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKF 224 (344)
Q Consensus 167 M~~~gi~p~~~--tli~~~~k~g-~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~ 224 (344)
|.++|++++.. .++..+...+ ..-.|.++++.+.+.+...+..|.=--|+.+.+.|-+
T Consensus 9 l~~~g~r~T~qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 69 (136)
T 1mzb_A 9 LRKAGLKVTLPRVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLV 69 (136)
T ss_dssp HHHTTCCCCHHHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHCCCCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcE
Confidence 45566655443 4555555544 4555666666666665555555544445555555543
No 276
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=33.57 E-value=2.7e+02 Score=25.20 Aligned_cols=23 Identities=17% Similarity=0.131 Sum_probs=11.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHH
Q 047934 242 NAFSYNLLIQGLYKCNKLEEAVE 264 (344)
Q Consensus 242 d~~tyn~LI~ay~k~g~~~~A~~ 264 (344)
|......+-..|.+.+++.+|..
T Consensus 133 dp~LH~~~a~~~~~e~~~~~A~~ 155 (312)
T 2wpv_A 133 DPYLHNTIGSKLLEGDFVYEAER 155 (312)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CHHHHHHHHHHHhhcCCHHHHHH
Confidence 44444455555555555555443
No 277
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=33.36 E-value=2.8e+02 Score=29.79 Aligned_cols=109 Identities=17% Similarity=0.170 Sum_probs=75.4
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCC---------H-----------------HHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 047934 151 EPISEPPQEADEIFKKMKETGLIPN---------A-----------------VAMLDGLCKDGLIQEAMKLFGLMREKGT 204 (344)
Q Consensus 151 ~~~sg~~~~A~~lf~~M~~~gi~p~---------~-----------------~tli~~~~k~g~~~~A~~lf~~M~~~g~ 204 (344)
+..+|++++|.+.|.+... ++..+ + .-++..+-+.+..+.|.++-....+..-
T Consensus 852 ~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~ 930 (1139)
T 4fhn_B 852 YLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKE 930 (1139)
T ss_dssp HHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCC
T ss_pred HHhcCCHHHHHHHHHHHhh-hhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 3448899999999976432 11100 0 1266777788888888877765554322
Q ss_pred CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 047934 205 IPE----VVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEA 262 (344)
Q Consensus 205 ~pd----~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A 262 (344)
.-+ ...|..+++++...|++++|...+-.+..... -......||..+|..+..+.-
T Consensus 931 ~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~cLr~LV~~lce~~~~~~L 990 (1139)
T 4fhn_B 931 TDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KKSCLLDFVNQLTKQGKINQL 990 (1139)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHHHHHHHHHHHHHHCCHHHH
T ss_pred CCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHHHHHHHHHHHHhCCChhhh
Confidence 212 23688999999999999999999988887643 355677888888887776543
No 278
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=33.35 E-value=25 Score=28.40 Aligned_cols=14 Identities=0% Similarity=-0.126 Sum_probs=6.6
Q ss_pred HHHcCCHHHHHHHH
Q 047934 218 FCKAQKFDDAKRIF 231 (344)
Q Consensus 218 y~k~g~~e~A~~vf 231 (344)
.+..|+.+-+..++
T Consensus 79 A~~~~~~~~~~~Ll 92 (201)
T 3hra_A 79 AGAQGRTEILAYML 92 (201)
T ss_dssp HHHTTCHHHHHHHH
T ss_pred HHHcCCHHHHHHHH
Confidence 34455555444444
No 279
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=33.33 E-value=1.3e+02 Score=21.57 Aligned_cols=37 Identities=14% Similarity=0.114 Sum_probs=19.8
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 047934 222 QKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEA 262 (344)
Q Consensus 222 g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A 262 (344)
...+.|.++++.+..+ ....|..++.++.+.+....|
T Consensus 50 t~~~kar~Lld~l~~k----G~~af~~F~~aL~~~~~~~La 86 (94)
T 2p1h_A 50 TQQQRAAMLIKMILKK----DNDSYVSFYNALLHEGYKDLA 86 (94)
T ss_dssp SHHHHHHHHHHHHTTS----CHHHHHHHHHHHHHTTCHHHH
T ss_pred ChHHHHHHHHHHHHHc----CHHHHHHHHHHHHHcCHHHHH
Confidence 3455566666555544 344555666666555544333
No 280
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=32.95 E-value=28 Score=29.64 Aligned_cols=133 Identities=12% Similarity=0.092 Sum_probs=63.7
Q ss_pred HHHHHHHHCCCCCCH-----HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH------------HHHHHHHHHHHcCCH
Q 047934 162 EIFKKMKETGLIPNA-----VAMLDGLCKDGLIQEAMKLFGLMREKGTIPEVV------------IYTAVVDGFCKAQKF 224 (344)
Q Consensus 162 ~lf~~M~~~gi~p~~-----~tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~------------tyn~LI~ay~k~g~~ 224 (344)
++++.+.+.|..++. .+.+...+..|..+ +++.+.+.|..++.. ...+.+...+..|+.
T Consensus 86 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~----~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~ 161 (285)
T 1wdy_A 86 KLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVK----ALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHV 161 (285)
T ss_dssp HHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHH----HHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCH
T ss_pred HHHHHHHHcCCCCCccCcccCCHHHHHHHhCCHH----HHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCH
Confidence 344555555554432 14555556667655 344444555444321 011344445566776
Q ss_pred HHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHHcCCHHHHHH
Q 047934 225 DDAKRIFRKMQSNGIAPN---AFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTT--FVGLVDGLCRERGVEKAQS 299 (344)
Q Consensus 225 e~A~~vf~~M~~~gi~pd---~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~t--y~~lL~a~~~~G~~e~a~~ 299 (344)
+-+..+++. .|..++ ...++.|..+ +..+......++++.+.+.|..++... -.+.|...+..|+.+.+..
T Consensus 162 ~~v~~Ll~~---~~~~~~~~~~~g~t~l~~a-~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ 237 (285)
T 1wdy_A 162 EVLKILLDE---MGADVNACDNMGRNALIHA-LLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQR 237 (285)
T ss_dssp HHHHHHHHT---SCCCTTCCCTTSCCHHHHH-HHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHh---cCCCCCccCCCCCCHHHHH-HHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHH
Confidence 555544432 143332 2223333333 345554445566666677776554322 1234445556677665555
Q ss_pred HHH
Q 047934 300 VIA 302 (344)
Q Consensus 300 l~~ 302 (344)
+++
T Consensus 238 Ll~ 240 (285)
T 1wdy_A 238 LLE 240 (285)
T ss_dssp HHH
T ss_pred HHh
Confidence 544
No 281
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=32.77 E-value=89 Score=25.66 Aligned_cols=124 Identities=14% Similarity=-0.090 Sum_probs=68.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH---------
Q 047934 178 AMLDGLCKDGLIQEAMKLFGLMREKG----TIPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAF--------- 244 (344)
Q Consensus 178 tli~~~~k~g~~~~A~~lf~~M~~~g----~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~--------- 244 (344)
|.|...+..|..+-+..+++.-.... ...|..-++ .|...+..|+.+-+.. +.+.|..++..
T Consensus 39 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t-~L~~A~~~~~~~~v~~----Ll~~g~~~~~~~~~~~~~~~ 113 (232)
T 2rfa_A 39 TALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQT-ALHIAVINQNVNLVRA----LLARGASVSARATGSVFHYR 113 (232)
T ss_dssp CHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCC-HHHHHHHTTCHHHHHH----HHHTTCCTTCCCCSGGGSCC
T ss_pred CHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcC-HHHHHHHcCCHHHHHH----HHhCCCCCCcccCCcceeec
Confidence 56666778888776665555321110 001112223 3444466777665444 44556555442
Q ss_pred -------HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHCCCcc
Q 047934 245 -------SYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTT--FVGLVDGLCRERGVEKAQSVIATLKEKGFLV 311 (344)
Q Consensus 245 -------tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~t--y~~lL~a~~~~G~~e~a~~l~~~M~~~Gi~p 311 (344)
-++.|. ..+..|+.+-+. .+.+.|..++... -.+.|...+..|+.+.+.++++.+.+.|-.+
T Consensus 114 ~~~~~~~g~t~L~-~A~~~~~~~~v~----~Ll~~ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~ 184 (232)
T 2rfa_A 114 PHNLIYYGEHPLS-FAACVGSEEIVR----LLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGD 184 (232)
T ss_dssp TTCSCCCCSSHHH-HHHHHTCHHHHH----HHHHTTCCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSC
T ss_pred ccccccCCCCHHH-HHHHcCCHHHHH----HHHHCCCCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCch
Confidence 233443 345566665444 4445565544322 1235566677899998888888888887644
No 282
>3se6_A Endoplasmic reticulum aminopeptidase 2; thermolysin-like catalytic domain, zinc BIND glycosylation, hydrolase; HET: LYS NAG MES MAN; 3.08A {Homo sapiens} PDB: 4e36_A*
Probab=32.57 E-value=4.7e+02 Score=27.62 Aligned_cols=29 Identities=0% Similarity=0.025 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 047934 209 VIYTAVVDGFCKAQKFDDAKRIFRKMQSN 237 (344)
Q Consensus 209 ~tyn~LI~ay~k~g~~e~A~~vf~~M~~~ 237 (344)
.--..++.+++...+.+...++++.....
T Consensus 819 ~ek~~ll~aL~ct~d~~ll~~~L~~~l~~ 847 (967)
T 3se6_A 819 AEQNKILYALSTSKHQEKLLKLIELGMEG 847 (967)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHhCc
Confidence 33455666666666666666666555443
No 283
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=32.52 E-value=2.2e+02 Score=26.69 Aligned_cols=151 Identities=11% Similarity=-0.007 Sum_probs=90.7
Q ss_pred CCCHHHHHHHHHHHHHC-CCCCCH------HHHHHHHHHc-CCHHHHHHHHHHHHHcCC-----CCCHHHHHHHHHHHHH
Q 047934 154 SEPPQEADEIFKKMKET-GLIPNA------VAMLDGLCKD-GLIQEAMKLFGLMREKGT-----IPEVVIYTAVVDGFCK 220 (344)
Q Consensus 154 sg~~~~A~~lf~~M~~~-gi~p~~------~tli~~~~k~-g~~~~A~~lf~~M~~~g~-----~pd~~tyn~LI~ay~k 220 (344)
.|+.++..+++..+..- +..+-. .+||+.+... +..+.-.++..+..++.- -....+=.-|...|..
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~l~~kL~~l~~~ 111 (394)
T 3txn_A 32 EGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQSLEARLIALYFD 111 (394)
T ss_dssp HTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666776666655431 112111 1467777664 334444444444332211 0011123468999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHH-----
Q 047934 221 AQKFDDAKRIFRKMQSNGIAPN-----AFSYNLLIQGLYKCNKLEEAVEYCIEMLEA--GHSPNVTTFVGLVDGL----- 288 (344)
Q Consensus 221 ~g~~e~A~~vf~~M~~~gi~pd-----~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~--gv~pd~~ty~~lL~a~----- 288 (344)
.|++.+|..++..+.+.=-..| ...|-.-+..|...+++..+...+..-... .+.+++..- +.|..|
T Consensus 112 ~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~-a~i~~~~Gi~~ 190 (394)
T 3txn_A 112 TALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ-GALDLQSGILH 190 (394)
T ss_dssp TTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH-HHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH-HHHHHHhhHHH
Confidence 9999999999999877311112 345778888899999999999988876542 233444432 333333
Q ss_pred H-HcCCHHHHHHHHHHHH
Q 047934 289 C-RERGVEKAQSVIATLK 305 (344)
Q Consensus 289 ~-~~G~~e~a~~l~~~M~ 305 (344)
. ..+++.+|...|-+..
T Consensus 191 l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 191 AADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHTTSCHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHH
Confidence 3 5789999988887764
No 284
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=32.38 E-value=80 Score=27.45 Aligned_cols=47 Identities=21% Similarity=0.175 Sum_probs=32.9
Q ss_pred CHHHHHHHHHHHHHCCCCCCHH----------HHHHHHHHcCCHHHHHHHHHHHHHc
Q 047934 156 PPQEADEIFKKMKETGLIPNAV----------AMLDGLCKDGLIQEAMKLFGLMREK 202 (344)
Q Consensus 156 ~~~~A~~lf~~M~~~gi~p~~~----------tli~~~~k~g~~~~A~~lf~~M~~~ 202 (344)
.++.|+-+|+.+...-..++.. ..+..|.+.|.+++|.++++.....
T Consensus 87 PLESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~ 143 (235)
T 3bu8_A 87 PLESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSK 143 (235)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTT
T ss_pred hHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcC
Confidence 4789999999988765443221 3566777888888888888776543
No 285
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=32.37 E-value=93 Score=22.93 Aligned_cols=36 Identities=11% Similarity=-0.017 Sum_probs=17.1
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 047934 188 LIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDA 227 (344)
Q Consensus 188 ~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A 227 (344)
..+.|.++++.+..+| ...|..+++++...+....|
T Consensus 52 ~~~~ar~Lld~L~~rG----~~Af~~F~~aL~et~~~~La 87 (97)
T 3ygs_P 52 RRDQARQLIIDLETRG----SQALPLFISCLEDTGQDMLA 87 (97)
T ss_dssp HHHHHHHHHHHHTTSC----TTHHHHHHHHHHTTTCHHHH
T ss_pred hHHHHHHHHHHHHHcC----hHHHHHHHHHHHHcCcHHHH
Confidence 4455555555554442 23455555555444444333
No 286
>2ii2_A Alpha-11 giardin; helix-turn-helix, metal binding protein; 1.10A {Giardia intestinalis} PDB: 2iic_A
Probab=32.33 E-value=2.2e+02 Score=25.67 Aligned_cols=161 Identities=8% Similarity=-0.027 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHcC--CHHHHHHHHHHHHHcCCCCCH-----H--HHHHHHHHHHHcCC-----
Q 047934 158 QEADEIFKKMKETGLIPNAVAMLDGLCKDG--LIQEAMKLFGLMREKGTIPEV-----V--IYTAVVDGFCKAQK----- 223 (344)
Q Consensus 158 ~~A~~lf~~M~~~gi~p~~~tli~~~~k~g--~~~~A~~lf~~M~~~g~~pd~-----~--tyn~LI~ay~k~g~----- 223 (344)
.+|..+.+.|.. . .+..+||..++... .+.+..+.|..+-...+.-|+ - .|-.++-+++...+
T Consensus 79 ~DA~~L~~A~kg--~-tde~~lieIL~~Rs~~~l~~I~~aY~~~y~~~Le~di~~e~sg~~~~~~ll~~ll~~~R~e~~~ 155 (310)
T 2ii2_A 79 ARVNVIKKAMKN--V-NDFRAIHDVVLIATPDERLKLAQAYKEKTGNDLLQDFVDQIPLTSAASYLCHLAIRENRTPRGS 155 (310)
T ss_dssp HHHHHHHHHHHS--S-CCHHHHHHHHHSCCHHHHHHHHHHHHHHHSSCHHHHHHHHCCSCSHHHHHHHHHHHCCCCCCSC
T ss_pred HHHHHHHHHhhC--C-CcHHHHHHHHHcCCHHHHHHHHHHHHHHHCcCHHHHHHhhcCCchHHHHHHHHHHhccCCcchH
Confidence 367777777775 3 57888888888755 444566666655433221111 1 45666666666544
Q ss_pred -HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHcCCC------C-CH---HHHHHHHHHHHH
Q 047934 224 -FDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKC--NKLEEAVEYCIEMLEAGHS------P-NV---TTFVGLVDGLCR 290 (344)
Q Consensus 224 -~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~--g~~~~A~~lf~~M~~~gv~------p-d~---~ty~~lL~a~~~ 290 (344)
-.+|..+++.+... ...|..++..++ +.. .++......|+++-...+. . +- ..+.+++ .|.+
T Consensus 156 a~~DA~~L~~A~~~~-~Gtde~~~i~Il---~~Rs~~~L~~i~~~Y~~~~g~~l~~~I~~e~~sG~~~~~Ll~iv-~~~~ 230 (310)
T 2ii2_A 156 VASDAEVLKHNLIDA-DEPDHEAVVRLI---ITSTADEYKEINHRFEVLTGKSVQEAIETRYADKENARGLCIAH-YYNL 230 (310)
T ss_dssp HHHHHHHHHHHHTTS-SSCCHHHHHHHH---HHCCHHHHHHHHHHHHHHHSSCHHHHHHHHCCSHHHHHHHHHHH-HHHH
T ss_pred HHHHHHHHHHHhhcc-cCCCHHHHHHHH---HhCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCccHHHHHHHHH-HHhC
Confidence 24788999888652 234666555544 322 2334444444444322111 1 11 1122222 2333
Q ss_pred cCCHHHHHHHHHHHHHCCCcccHHHHHHHHh-ccCCC
Q 047934 291 ERGVEKAQSVIATLKEKGFLVNDKAVREFLD-KKAPF 326 (344)
Q Consensus 291 ~G~~e~a~~l~~~M~~~Gi~p~~~~~~~Ll~-~yak~ 326 (344)
..-.-.|..++..|...|...|..+..-++. .+.+.
T Consensus 231 ~~~~~fA~~L~~Am~g~Gt~td~~~l~Riv~~~~~~~ 267 (310)
T 2ii2_A 231 APARAVAYAFHSAVETQNDDMAYEQAARITGLFHDLH 267 (310)
T ss_dssp CHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHTTTT
T ss_pred CHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHhccH
Confidence 3334567777777764442256666666665 34444
No 287
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=31.66 E-value=46 Score=29.60 Aligned_cols=105 Identities=13% Similarity=0.059 Sum_probs=53.8
Q ss_pred HHHHHHHHcCCCCCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 047934 194 KLFGLMREKGTIPEVVI--YTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPN---AFSYNLLIQGLYKCNKLEEAVEYCIE 268 (344)
Q Consensus 194 ~lf~~M~~~g~~pd~~t--yn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd---~~tyn~LI~ay~k~g~~~~A~~lf~~ 268 (344)
.+.+.+.+.|..++... ..+.|...+..|..+.+..++.. .|..++ ..-++.|..| ++.|+.+- .+.
T Consensus 220 ~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~---~~~~vn~~d~~G~TpL~~A-~~~g~~~i----v~~ 291 (337)
T 4g8k_A 220 AITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQ---EHIEINDTDSDGKTALLLA-VELKLKKI----AEL 291 (337)
T ss_dssp HHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTS---TTCCTTCBCTTSCBHHHHH-HHTTCHHH----HHH
T ss_pred HHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHh---cCCcccCcCCCCCCHHHHH-HHcCCHHH----HHH
Confidence 34445566776554321 22344555677777766655432 233332 2223344433 45666543 344
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCcccH
Q 047934 269 MLEAGHSPNVTTFVGLVDGLCRERGVEKAQSVIATLKEKGFLVND 313 (344)
Q Consensus 269 M~~~gv~pd~~ty~~lL~a~~~~G~~e~a~~l~~~M~~~Gi~p~~ 313 (344)
+.+.|..+|..+ .|...++.|+.+ +.+.+.++|-.||.
T Consensus 292 Ll~~GAd~n~~~---~L~~A~~~~~~~----iv~~Ll~~GA~~d~ 329 (337)
T 4g8k_A 292 LCKRGASTDCGD---LVMTARRNYDHS----LVKVLLSHGAKEDF 329 (337)
T ss_dssp HHTTSCSSTTCC---HHHHHHHTTCHH----HHHHHHHTTCCC--
T ss_pred HHHCCCCCCCCC---HHHHHHHcCCHH----HHHHHHHCcCCCCC
Confidence 456777666544 334445566654 45566677776663
No 288
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=31.44 E-value=2.2e+02 Score=25.21 Aligned_cols=123 Identities=18% Similarity=0.200 Sum_probs=60.8
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHH-HHcCCH-----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 047934 195 LFGLMREKGTIPEVVIYTAVVDGF-CKAQKF-----DDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIE 268 (344)
Q Consensus 195 lf~~M~~~g~~pd~~tyn~LI~ay-~k~g~~-----e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~ 268 (344)
++..|.+.+..-....-++++-.. -|.|+. +.+.+++..|.. +-|-...+..++.+. +..++..-.++++.
T Consensus 114 l~~~l~~~~y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~--v~~~~~v~~~l~~g~-ksKN~R~R~e~l~~ 190 (266)
T 2of3_A 114 IVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSD--VVGPLKMTPMLLDAL-KSKNARQRSECLLV 190 (266)
T ss_dssp HHHHHHHTTCCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHH--HHCHHHHHHHHHHGG-GCSCHHHHHHHHHH
T ss_pred HHHHHHhccccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH--HCCHHHHHHHHHHHH-ccCCHHHHHHHHHH
Confidence 344555666666655555555443 355654 345556655543 233444566666644 66666544444444
Q ss_pred HHH----cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCcccHHHHHHHHhccCCCChHHHHHH
Q 047934 269 MLE----AGHSPNVTTFVGLVDGLCRERGVEKAQSVIATLKEKGFLVNDKAVREFLDKKAPFSSSVWEAI 334 (344)
Q Consensus 269 M~~----~gv~pd~~ty~~lL~a~~~~G~~e~a~~l~~~M~~~Gi~p~~~~~~~Ll~~yak~g~~~W~al 334 (344)
+.. .|..|.. +..+ + ..+...+.+..-..-..+.++++++|...|+.+|.-+
T Consensus 191 l~~li~~~G~~~~~--~l~~----------~--~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~v~k~l 246 (266)
T 2of3_A 191 IEYYITNAGISPLK--SLSV----------E--KTVAPFVGDKDVNVRNAAINVLVACFKFEGDQMWKAA 246 (266)
T ss_dssp HHHHHHHHCSGGGG--GGCH----------H--HHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHhcCCCccc--cccc----------h--HHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 322 3443211 0000 0 1111111112222234677888888888898888765
No 289
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=31.08 E-value=35 Score=28.98 Aligned_cols=139 Identities=14% Similarity=0.011 Sum_probs=66.7
Q ss_pred HHHHHHHHCCCCCCH-----HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHHcCCHHHHHHHHHHH
Q 047934 162 EIFKKMKETGLIPNA-----VAMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVI--YTAVVDGFCKAQKFDDAKRIFRKM 234 (344)
Q Consensus 162 ~lf~~M~~~gi~p~~-----~tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~t--yn~LI~ay~k~g~~e~A~~vf~~M 234 (344)
++++.+.+.|..++. .+.+...+..|..+ +++.+.+.|..++... ..+.+...+..|+.+-+. .+
T Consensus 53 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~----~L 124 (285)
T 1wdy_A 53 DIVELLLRHGADPVLRKKNGATPFLLAAIAGSVK----LLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALK----FL 124 (285)
T ss_dssp HHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHH----HHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHH----HH
T ss_pred HHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHH----HHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHH----HH
Confidence 344555555654432 14555566667655 4444555665443221 122344445667765444 44
Q ss_pred HHCCCCCCHHH------------HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHHcCCHHHHHH
Q 047934 235 QSNGIAPNAFS------------YNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNV---TTFVGLVDGLCRERGVEKAQS 299 (344)
Q Consensus 235 ~~~gi~pd~~t------------yn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~---~ty~~lL~a~~~~G~~e~a~~ 299 (344)
.+.|..++... -.+.+...+..|..+-+..+++. .|..++. .-.+. +...+..|..+...+
T Consensus 125 l~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---~~~~~~~~~~~g~t~-l~~a~~~~~~~~~~~ 200 (285)
T 1wdy_A 125 YKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDE---MGADVNACDNMGRNA-LIHALLSSDDSDVEA 200 (285)
T ss_dssp HHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHT---SCCCTTCCCTTSCCH-HHHHHHCSCTTTHHH
T ss_pred HHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHh---cCCCCCccCCCCCCH-HHHHHHccccchHHH
Confidence 45555444220 11233344556776554444432 1443322 22222 333344566555566
Q ss_pred HHHHHHHCCCccc
Q 047934 300 VIATLKEKGFLVN 312 (344)
Q Consensus 300 l~~~M~~~Gi~p~ 312 (344)
+++.+.+.|..++
T Consensus 201 i~~~Ll~~g~~~~ 213 (285)
T 1wdy_A 201 ITHLLLDHGADVN 213 (285)
T ss_dssp HHHHHHHTTCCSS
T ss_pred HHHHHHHcCCCCC
Confidence 7777777776554
No 290
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=30.72 E-value=3.6e+02 Score=28.20 Aligned_cols=89 Identities=16% Similarity=0.099 Sum_probs=57.5
Q ss_pred HHHHHHHcCC---HHHHHHHHHHHHHcC----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 047934 179 MLDGLCKDGL---IQEAMKLFGLMREKG----TIPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQ 251 (344)
Q Consensus 179 li~~~~k~g~---~~~A~~lf~~M~~~g----~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ 251 (344)
++...|..|. .++|.+.|+.....+ +.||.. .++...-.+.|..++-..+++.+.... +..--..++.
T Consensus 692 ~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr--~~vy~~~~~~g~~~~~~~l~~~~~~~~---~~~ek~~ll~ 766 (909)
T 4fke_A 692 AISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLR--STIYCNAIAQGGQDQWDFAWGQLQQAQ---LVNEADKLRS 766 (909)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTTH--HHHHHHHHHHSCHHHHHHHHHHHHHCC---SHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHHH--HHHHHHHHHhCCHHHHHHHHHHHHccC---CHHHHHHHHH
Confidence 5666777775 457888888766532 556543 222333345677777777777777652 4445567888
Q ss_pred HHHHcCCHHHHHHHHHHHHHc
Q 047934 252 GLYKCNKLEEAVEYCIEMLEA 272 (344)
Q Consensus 252 ay~k~g~~~~A~~lf~~M~~~ 272 (344)
+++...+.+...++++.....
T Consensus 767 aL~~~~d~~~l~~~L~~~l~~ 787 (909)
T 4fke_A 767 ALACSNEVWLLNRYLGYTLNP 787 (909)
T ss_dssp HHTTCCCHHHHHHHHHHTTCT
T ss_pred HhCCCCCHHHHHHHHHHHhCC
Confidence 888888888777777766543
No 291
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=30.21 E-value=47 Score=27.50 Aligned_cols=119 Identities=10% Similarity=-0.061 Sum_probs=69.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH---------------HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 047934 178 AMLDGLCKDGLIQEAMKLFGLMREKGTIPEVV---------------IYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPN 242 (344)
Q Consensus 178 tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~---------------tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd 242 (344)
+.+...+..|..+- ++.+.+.|..++.. ...+.+...+..|+.+-+..+ .+.|..++
T Consensus 77 t~L~~A~~~~~~~~----v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~L----l~~ga~~~ 148 (232)
T 2rfa_A 77 TALHIAVINQNVNL----VRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLL----IEHGADIR 148 (232)
T ss_dssp CHHHHHHHTTCHHH----HHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHH----HHTTCCTT
T ss_pred CHHHHHHHcCCHHH----HHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHH----HHCCCCCC
Confidence 45566667787664 44455566555442 123345555667776655444 45566554
Q ss_pred HHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 047934 243 AFS--YNLLIQGLYKCNKLEEAVEYCIEMLEAGHSP---------NVTTFVGLVDGLCRERGVEKAQSVIATLK 305 (344)
Q Consensus 243 ~~t--yn~LI~ay~k~g~~~~A~~lf~~M~~~gv~p---------d~~ty~~lL~a~~~~G~~e~a~~l~~~M~ 305 (344)
... -.+.+...+..|+.+.+..+++.+.+.|..+ |..-.+ .|...+..|+.+.+..+++.=.
T Consensus 149 ~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~t-pl~~A~~~g~~~~v~~Ll~~g~ 221 (232)
T 2rfa_A 149 AQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLT-PFKLAGVEGNIVMFQHLMQKRK 221 (232)
T ss_dssp CCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCC-HHHHHHHHTCHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCC-HHHHHHHcCCHHHHHHHHhcCc
Confidence 321 1234455567889988888888888877543 222233 3455566788777766666543
No 292
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=29.97 E-value=1.3e+02 Score=20.69 Aligned_cols=31 Identities=10% Similarity=0.204 Sum_probs=12.9
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 047934 262 AVEYCIEMLEAGHSPNVTTFVGLVDGLCRER 292 (344)
Q Consensus 262 A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~G 292 (344)
+.++++.+.+.+...+..|.--.|..+...|
T Consensus 36 ~~el~~~l~~~~~~is~~TVyR~L~~L~~~G 66 (83)
T 2fu4_A 36 AEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (83)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 3444444444433334444444444444333
No 293
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=29.58 E-value=25 Score=29.89 Aligned_cols=119 Identities=9% Similarity=-0.025 Sum_probs=64.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHHc---CCHHHHHHHHHHHHHCCCC-------
Q 047934 178 AMLDGLCKDGLIQEAMKLFGLMREKGTIPEV-------VIYTAVVDGFCKA---QKFDDAKRIFRKMQSNGIA------- 240 (344)
Q Consensus 178 tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~-------~tyn~LI~ay~k~---g~~e~A~~vf~~M~~~gi~------- 240 (344)
+.|...++.|+.+.+..+++.+.+.|..++. .-.+.|..+ +.. |+.+-+..+++.-...+..
T Consensus 4 t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A-~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~ 82 (256)
T 2etb_A 4 DRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKA-VLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQ 82 (256)
T ss_dssp HHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHH-HHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCC
T ss_pred cHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHH-HHccccchHHHHHHHHhcCCcccchhhhcccc
Confidence 3455567788888887788877777765543 333444444 455 7777777777654433211
Q ss_pred ---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH---------------HHHHHHHHHHcCCHHHHHHHHH
Q 047934 241 ---PNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTT---------------FVGLVDGLCRERGVEKAQSVIA 302 (344)
Q Consensus 241 ---pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~t---------------y~~lL~a~~~~G~~e~a~~l~~ 302 (344)
.|..-++.|.. .+..|+.+-+.. +.+.|..++... -.+.|...+..|+.+.+..+++
T Consensus 83 ~~~~d~~g~t~L~~-A~~~g~~~~v~~----Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~ 157 (256)
T 2etb_A 83 CTDEFYQGHSALHI-AIEKRSLQCVKL----LVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLE 157 (256)
T ss_dssp CCSTTTTTCCHHHH-HHHTTCHHHHHH----HHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHH
T ss_pred cccccccCCCHHHH-HHHcCCHHHHHH----HHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHh
Confidence 11223344444 345677655444 444555544332 1234444556777765554444
No 294
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=29.52 E-value=1.8e+02 Score=23.57 Aligned_cols=50 Identities=16% Similarity=0.153 Sum_probs=28.5
Q ss_pred HHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 047934 227 AKRIFRKMQSNGIAPN-AFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSP 276 (344)
Q Consensus 227 A~~vf~~M~~~gi~pd-~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~p 276 (344)
+.++|..|..+||.-. +.-|-..-..+-..|++++|.++|+.-.+.+-+|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 6666666666655433 3344455555555666666666666666555555
No 295
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=29.22 E-value=1.7e+02 Score=26.12 Aligned_cols=55 Identities=13% Similarity=0.082 Sum_probs=32.8
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 047934 217 GFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEA 272 (344)
Q Consensus 217 ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~ 272 (344)
...+.|.+++|+.....-.+.. .-|...=..|+.-+|-.|+++.|.+-++...+.
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 3445666666666665555442 235555556677777777777776666655543
No 296
>2hyv_A Annexin A2; calcium-binding protein, membrane-binding protein, helix BUN heparin, hexasaccharide, metal binding protein; HET: UAP SGN IDS; 1.42A {Homo sapiens} PDB: 2hyu_A* 2hyw_A 1w7b_A 1xjl_A
Probab=27.89 E-value=3.3e+02 Score=24.40 Aligned_cols=156 Identities=17% Similarity=0.150 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHcCCH--HHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHHcCCHHHHHH
Q 047934 157 PQEADEIFKKMKETGLIPNAVAMLDGLCKDGLI--QEAMKLFGLMREKGTIPE-----VVIYTAVVDGFCKAQKFDDAKR 229 (344)
Q Consensus 157 ~~~A~~lf~~M~~~gi~p~~~tli~~~~k~g~~--~~A~~lf~~M~~~g~~pd-----~~tyn~LI~ay~k~g~~e~A~~ 229 (344)
-++|..+.+.|...| .+..++|..++..... .+..+-|..+-...+.-+ .--|-.+|-++....-..+|..
T Consensus 5 ~~Da~~L~kA~kg~G--tde~~ii~IL~~rs~~qr~~I~~~Y~~~~g~dL~~~lk~elsG~fe~~l~~l~~~~~~~DA~~ 82 (308)
T 2hyv_A 5 ERDALNIETAIKTKG--VDEVTIVNILTNRSNAQRQDIAFAYQRRTKKELASALKSALSGHLETVILGLLKTPAQYDASE 82 (308)
T ss_dssp HHHHHHHHHHHHSTT--CCHHHHHHHHTTSCHHHHHHHHHHHHHHHSSCHHHHHHHHCCHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHhcCCC--CCHHHHHHHHhcCCHHHHHHHHHHHHHHhCccHHHHHHHHcCCCHHHHHHHHcCCcHHHHHHH
Confidence 357899999997555 4788899888876532 233334444432211100 1234555556665545567888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHHcCC---------
Q 047934 230 IFRKMQSNGIAPNAFSYNLLIQGLYKCN--KLEEAVEYCIEMLEAGHSPN-----VTTFVGLVDGLCRERG--------- 293 (344)
Q Consensus 230 vf~~M~~~gi~pd~~tyn~LI~ay~k~g--~~~~A~~lf~~M~~~gv~pd-----~~ty~~lL~a~~~~G~--------- 293 (344)
+.+.|+..| .|. .+||..++... +.....+.|..+-...+.-| .-.|.-+|-+++...+
T Consensus 83 L~~AmkG~G--tde---~~LieIL~~Rs~~q~~~Ik~aY~~~y~~~L~~di~se~sG~f~~ll~~l~~~~r~~e~~~vd~ 157 (308)
T 2hyv_A 83 LKASMKGLG--TDE---DSLIEIICSRTNQELQEINRVYKEMYKTDLEKDIISDTSGDFRKLMVALAKGRRAEDGSVIDY 157 (308)
T ss_dssp HHHHTSTTC--CCH---HHHHHHHHHCCHHHHHHHHHHHHHHHSSCHHHHHHHTCCHHHHHHHHHHHTCCCCCCCSSCCH
T ss_pred HHHHhhcCC--CCH---HHHHHHHhcCCHHHHHHHHHHHHHhhCCCHHHHHhhccCccHHHHHHHHHccccccccCCCCc
Confidence 888886654 344 45666666544 34455666665543322111 1236667777776554
Q ss_pred ---HHHHHHHHHHHHHCCCcccHHHHHHHH
Q 047934 294 ---VEKAQSVIATLKEKGFLVNDKAVREFL 320 (344)
Q Consensus 294 ---~e~a~~l~~~M~~~Gi~p~~~~~~~Ll 320 (344)
-.+|..+++.+. .++..|..++..++
T Consensus 158 ~~a~~DA~~L~~A~~-~~~Gtde~~li~Il 186 (308)
T 2hyv_A 158 ELIDQDARDLYDAGV-KRKGTDVPKWISIM 186 (308)
T ss_dssp HHHHHHHHHHHHTTT-TSSSCCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhh-ccCCCcHHHHHHHH
Confidence 345555555432 23445655555444
No 297
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=27.68 E-value=3.1e+02 Score=25.94 Aligned_cols=62 Identities=16% Similarity=0.126 Sum_probs=44.4
Q ss_pred HHHHHH---HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHCCCc
Q 047934 249 LIQGLY---KCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRERG-----VEKAQSVIATLKEKGFL 310 (344)
Q Consensus 249 LI~ay~---k~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~-----~e~a~~l~~~M~~~Gi~ 310 (344)
+|+++. +..+.+.|+..+.+|.+.|..|....=-.++.+.-..|. +..|...++....-|+.
T Consensus 258 ~isal~ksirgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~a~p~a~~~~~~~~~~~~~~g~p 327 (447)
T 3pvs_A 258 LISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVGPA 327 (447)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTHHHHHHHHHHHHHHHSCHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHhCCc
Confidence 444443 468899999999999999988777766667777666663 45566666666777765
No 298
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=27.41 E-value=1e+02 Score=24.56 Aligned_cols=58 Identities=19% Similarity=0.182 Sum_probs=29.3
Q ss_pred HHHHCCCCCCHH--HHHHHHHHcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 047934 166 KMKETGLIPNAV--AMLDGLCKDG-LIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQK 223 (344)
Q Consensus 166 ~M~~~gi~p~~~--tli~~~~k~g-~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~ 223 (344)
.|.++|+.++.. .++..+...+ ..-.|.++++.+.+.+...+..|.=--|+.+...|-
T Consensus 7 ~l~~~g~r~T~qR~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 67 (150)
T 2w57_A 7 ALKDAGLKVTLPRLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGI 67 (150)
T ss_dssp HHHHTTCCCCHHHHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHcCCCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCc
Confidence 345556554433 4555554444 444566666666655544454444444444555544
No 299
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=27.07 E-value=99 Score=24.46 Aligned_cols=56 Identities=7% Similarity=0.083 Sum_probs=27.9
Q ss_pred HHHHCCCCCCHH--HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 047934 166 KMKETGLIPNAV--AMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQ 222 (344)
Q Consensus 166 ~M~~~gi~p~~~--tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g 222 (344)
.+.++|++++.. .++..+...+ .-.|.++++.+.+.+...+..|.=--|+.+.+.|
T Consensus 9 ~L~~~g~r~T~qR~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 9 DLRQRGYRLTPQRQLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp HHHTTTCCCCHHHHHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred HHHHcCCCcCHHHHHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 344555555443 4555555544 4456666666655554444444333344444444
No 300
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=26.53 E-value=2.1e+02 Score=23.15 Aligned_cols=55 Identities=7% Similarity=0.064 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCcccHH
Q 047934 260 EEAVEYCIEMLEAGHSPN-VTTFVGLVDGLCRERGVEKAQSVIATLKEKGFLVNDK 314 (344)
Q Consensus 260 ~~A~~lf~~M~~~gv~pd-~~ty~~lL~a~~~~G~~e~a~~l~~~M~~~Gi~p~~~ 314 (344)
+++.++|..|...|+--. ..-|...-..+...|++.+|.+++..=++.+-.|-..
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~r 137 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPREF 137 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHH
Confidence 448999999999988544 5667778888889999999999999999998888653
No 301
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=26.02 E-value=1.6e+02 Score=26.37 Aligned_cols=116 Identities=13% Similarity=0.150 Sum_probs=69.3
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHcCC
Q 047934 181 DGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQKFDDAKRIFRKMQSNG--IAPNAFSYNLLIQGLYKCNK 258 (344)
Q Consensus 181 ~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~~e~A~~vf~~M~~~g--i~pd~~tyn~LI~ay~k~g~ 258 (344)
....+.|.+++|++....-.+. -+.|...=..|+.-+|-.|+++.|.+-++...+.. ..+-+.+|..+|.+
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~-~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~a------ 77 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKA-SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKA------ 77 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHT-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH------
T ss_pred HHHHhCCCHHHHHHHHHHHHHh-CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHH------
Confidence 3456778888888877766665 34577777888888888888888888777776541 11222344444443
Q ss_pred HHHHHHHHHHHHHcCC-----CCCHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHC
Q 047934 259 LEEAVEYCIEMLEAGH-----SPNVTTFVGLVDGLC--RERGVEKAQSVIATLKEK 307 (344)
Q Consensus 259 ~~~A~~lf~~M~~~gv-----~pd~~ty~~lL~a~~--~~G~~e~a~~l~~~M~~~ 307 (344)
+..-.++...+- .....-...++.+.. ..|+.++|.++-....+.
T Consensus 78 ----E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 78 ----AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp ----HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 222222222221 122233445666655 458888888887777543
No 302
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=25.87 E-value=2.3e+02 Score=21.87 Aligned_cols=63 Identities=14% Similarity=0.142 Sum_probs=43.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHCCCC
Q 047934 177 VAMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIYTAVVDGFCKAQK--FDDAKRIFRKMQSNGIA 240 (344)
Q Consensus 177 ~tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ay~k~g~--~e~A~~vf~~M~~~gi~ 240 (344)
..+|.-|...|+.++|.+.++++..-.+ ....+..++..++-+.+. .+.+..++..+...|+-
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~f-~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~i 75 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 75 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCcc-HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 4689999999999999999999853222 234555566666655432 45677777777766433
No 303
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=25.73 E-value=1.7e+02 Score=20.18 Aligned_cols=32 Identities=6% Similarity=0.171 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 047934 226 DAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCN 257 (344)
Q Consensus 226 ~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g 257 (344)
.+.++++.+.+.+...+..|-.-.|..+.+.|
T Consensus 35 s~~el~~~l~~~~~~is~~TVyR~L~~L~~~G 66 (83)
T 2fu4_A 35 SAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (83)
T ss_dssp CHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 34444444444433334444443444444333
No 304
>1n00_A Annexin GH1; membrane-binding, calcium-binding, membrane protein; 2.10A {Gossypium hirsutum} SCOP: a.65.1.1 PDB: 3brx_A 1ycn_A 2q4c_A 1dk5_A
Probab=25.61 E-value=1.6e+02 Score=26.72 Aligned_cols=158 Identities=13% Similarity=0.075 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHcC--CHHHHHHHHHHHHHcCCCCCHHH-----HHHHHHHHHHcCCHHHHHHH
Q 047934 158 QEADEIFKKMKETGLIPNAVAMLDGLCKDG--LIQEAMKLFGLMREKGTIPEVVI-----YTAVVDGFCKAQKFDDAKRI 230 (344)
Q Consensus 158 ~~A~~lf~~M~~~gi~p~~~tli~~~~k~g--~~~~A~~lf~~M~~~g~~pd~~t-----yn~LI~ay~k~g~~e~A~~v 230 (344)
.+|..+.+.|...|. +..++|..++... ...+..+.|..+-...+.-+... |-.+|-++....-..+|..+
T Consensus 20 ~DA~~L~~A~kG~Gt--de~~lieIL~~rs~~q~~~I~~aY~~~y~~~L~~dl~se~sG~f~~ll~~l~~~~~~~dA~~l 97 (321)
T 1n00_A 20 EDCEQLRKAFSGWGT--NEGLIIDILGHRNAEQRNLIRKTYAETYGEDLLKALDKELSNDFERLVLLWALDPAERDALLA 97 (321)
T ss_dssp HHHHHHHHHTSSSSC--CHHHHHHHHTTCCHHHHHHHHHHHHHHHSSCHHHHHHHHSCHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCC--CHHHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHhcCchHHHHHHHHcCChhHHHHHHH
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH-----HHHHHHHHHHcCCHH----------
Q 047934 231 FRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTT-----FVGLVDGLCRERGVE---------- 295 (344)
Q Consensus 231 f~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~t-----y~~lL~a~~~~G~~e---------- 295 (344)
.+.| .|...|..++.-++..... .++....+.|..+-...+.-+... |.-+|.+.++..+-+
T Consensus 98 ~~A~--kg~Gtde~~lieIL~tRs~-~ql~~i~~~Y~~~~g~~Le~dI~~e~sG~~~~~L~~lv~~~r~~~~~vd~~~~~ 174 (321)
T 1n00_A 98 NEAT--KRWTSSNQVLMEIACTRSA-NQLLHARQAYHARYKKSLEEDVAHHTTGDFHKLLLPLVSSYRYEGEEVNMTLAK 174 (321)
T ss_dssp HHHH--SSSCSSCHHHHHHHHSSCH-HHHHHHHHHHHHHHSSCHHHHHHHHCCHHHHHHHHHHHHCCCCCSCCCCHHHHH
T ss_pred HHHh--hccCCCHHHHHHHHhcCCH-HHHHHHHHHHHHHhCccHHHHHHhccCcHHHHHHHHHHhcccCCCcCCChhhhH
Q ss_pred -HHHHHHHHHHHCCCcccHHHHHHHHh
Q 047934 296 -KAQSVIATLKEKGFLVNDKAVREFLD 321 (344)
Q Consensus 296 -~a~~l~~~M~~~Gi~p~~~~~~~Ll~ 321 (344)
.|..+++.|...+-.-+. ....|+.
T Consensus 175 ~dA~~L~~A~~g~~gtde~-lirIl~~ 200 (321)
T 1n00_A 175 TEAKLLHEKISNKAYSDDD-VIRVLAT 200 (321)
T ss_dssp HHHHHHHHHHHTTCTTCHH-HHHHHHH
T ss_pred HHHHHHHHHhhCcCCCcHH-HHHHHHh
No 305
>2zhj_A Annexin A4; zynogen granule, membrane binding protein, metal binding protein, calcium, calcium/phospholipid-binding; 1.35A {Rattus norvegicus} PDB: 2zhi_A 2zoc_A 1ann_A 1i4a_A 1aow_A
Probab=25.48 E-value=3.6e+02 Score=24.33 Aligned_cols=157 Identities=13% Similarity=0.152 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHcC--CHHHHHHHHHHHHHcCCCCCHH-----HHHHHHHHHHHcCCHHHHHHH
Q 047934 158 QEADEIFKKMKETGLIPNAVAMLDGLCKDG--LIQEAMKLFGLMREKGTIPEVV-----IYTAVVDGFCKAQKFDDAKRI 230 (344)
Q Consensus 158 ~~A~~lf~~M~~~gi~p~~~tli~~~~k~g--~~~~A~~lf~~M~~~g~~pd~~-----tyn~LI~ay~k~g~~e~A~~v 230 (344)
.+|..+.+.|...|. +..+||..++... ...+..+.|..+-...+.-+.. -|-.+|-++....--.+|..+
T Consensus 21 ~Da~~L~kA~kG~Gt--dE~~li~IL~~rs~~qr~~I~~~Y~~~~g~~L~~~lkselsG~fe~~l~~l~~~~~~~DA~~L 98 (322)
T 2zhj_A 21 EDAQVLRKAMKGLGT--DEDAIIGVLACRNTAQRQEIRTAYKSTIGRDLLEDLKSELSSNFEQVILGMMTPTVLYDVQEL 98 (322)
T ss_dssp HHHHHHHHHHSSSSC--CHHHHHHHHTTSCHHHHHHHHHHHHHHHCSCHHHHHHHHCCHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCC--CHHHHHHHHhcCCHHHHHHHHHHHHHHhCchHHHHHHhhcCccHHHHHHHHcCCcHHHHHHHH
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH-----HHHHHHHHHHcCC-----------H
Q 047934 231 FRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTT-----FVGLVDGLCRERG-----------V 294 (344)
Q Consensus 231 f~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~t-----y~~lL~a~~~~G~-----------~ 294 (344)
.+.| .|...|..+..-++ +-....++.+..+.|..+-...+.-+... |.-+|-+++...+ -
T Consensus 99 ~~A~--kg~Gtde~~lieIL-~~Rs~~ql~~I~~aY~~~y~~~Le~di~~e~sG~~~~~l~~ll~~~r~e~~~vd~~~a~ 175 (322)
T 2zhj_A 99 RRAM--KGAGTDEGCLIEIL-ASRNPEEIRRINQTYQQQYGRSLEEDICSDTSFMFQRVLVSLTAGGRDEGNYLDDALVK 175 (322)
T ss_dssp HHHH--SSSCCCHHHHHHHH-HHSCHHHHHHHHHHHHHHHSSCHHHHHHHHCCHHHHHHHHHHHHCCCCCSCCCCHHHHH
T ss_pred HHhh--hccCCCHHHHHHHH-hcCCHHHHHHHHHHHHHHhCccHHHHHHhhcCchHHHHHHHHHhhccccccccCCCHHH
Q ss_pred HHHHHHHHHHHHCCCcccHHHHHHHH
Q 047934 295 EKAQSVIATLKEKGFLVNDKAVREFL 320 (344)
Q Consensus 295 e~a~~l~~~M~~~Gi~p~~~~~~~Ll 320 (344)
..|..+++.+.+ |+..|..++..++
T Consensus 176 ~dA~~L~~A~~~-~~Gtde~~li~Il 200 (322)
T 2zhj_A 176 QDAQDLYEAGEK-RWGTDEVKFLSIL 200 (322)
T ss_dssp HHHHHHHHHTTT-SSSCCHHHHHHHH
T ss_pred HHHHHHHHhhhc-CCCCchHHHhHhH
No 306
>1dm5_A Annexin XII E105K mutant homohexamer; novel PH-dependent hexamerization switch E76, low calcium form; 1.93A {Hydra vulgaris} SCOP: a.65.1.1 PDB: 1aei_A
Probab=24.87 E-value=3.5e+02 Score=24.29 Aligned_cols=156 Identities=14% Similarity=0.113 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHcCC--HHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHHcCCHHHHHH
Q 047934 157 PQEADEIFKKMKETGLIPNAVAMLDGLCKDGL--IQEAMKLFGLMREKGTIPE-----VVIYTAVVDGFCKAQKFDDAKR 229 (344)
Q Consensus 157 ~~~A~~lf~~M~~~gi~p~~~tli~~~~k~g~--~~~A~~lf~~M~~~g~~pd-----~~tyn~LI~ay~k~g~~e~A~~ 229 (344)
-.+|..+.+.|...| .+..++|..++.... ..+..+.|..+-...+.-+ .--|-.+|-+++......+|..
T Consensus 15 ~~DA~~L~~A~kG~G--tde~~lieIL~~rs~~q~~~I~~~Y~~~yg~~L~~dl~se~sG~f~~ll~~l~~~~~~~dA~~ 92 (315)
T 1dm5_A 15 REDAETLRKAMKGIG--TDEKSITHILATRSNAQRQQIKTDYTTLFGKHLEDELKSELSGNYEAAALALLRKPDEFLAEQ 92 (315)
T ss_dssp HHHHHHHHHHHSSSS--CCHHHHHHHHHHSCHHHHHHHHHHHHHHHSSCHHHHHHHHCCHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHhcCCC--CCHHHHHHHHhcCCHHHHHHHHHHHHHHHCCCHHHHHHhhcCccHHHHHHHHccChhHHHHHH
Confidence 468889999986444 578899999888653 3455555665543322111 1246667777777656678999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHcCCCCCH-----HHHHHHHHHHHHcCCH--------
Q 047934 230 IFRKMQSNGIAPNAFSYNLLIQGLYKCN--KLEEAVEYCIEMLEAGHSPNV-----TTFVGLVDGLCRERGV-------- 294 (344)
Q Consensus 230 vf~~M~~~gi~pd~~tyn~LI~ay~k~g--~~~~A~~lf~~M~~~gv~pd~-----~ty~~lL~a~~~~G~~-------- 294 (344)
+++.|...| .|.. ++|..++... ++....+.|..+-...+.-+. -.|.-++.+.++..+.
T Consensus 93 L~~A~kg~G--tde~---~lieIL~tRs~~ql~~i~~~Y~~~yg~~Le~dI~~e~sG~~~~~L~~lv~~~r~~~~~vd~~ 167 (315)
T 1dm5_A 93 LHAAMKGLG--TDKN---ALIDILCTQSNAQIHAIKAAFKLLYKEDLEKEIISETSGNFQRLLVSMLQGGRKEDEPVNAA 167 (315)
T ss_dssp HHHHHHSSS--CCHH---HHHHHHSSCCHHHHHHHHHHHHHHHSSCHHHHHHHHCCHHHHHHHHHHHTTCCCTTCCCCHH
T ss_pred HHHHhhcCC--Cchh---hhhhhHhcCCHHHHHHHHHHHHHHhCccHHHHHHhccCchHHHHHHHHHccccCCCCCCCHH
Confidence 999996654 3544 3444444332 233444445444332221111 1245455555543321
Q ss_pred ---HHHHHHHHHHHHCCCcccHHHHHHHH
Q 047934 295 ---EKAQSVIATLKEKGFLVNDKAVREFL 320 (344)
Q Consensus 295 ---e~a~~l~~~M~~~Gi~p~~~~~~~Ll 320 (344)
..|..+++.|... +..|..++..++
T Consensus 168 ~a~~dA~~L~~A~~~~-~GTde~~lirIl 195 (315)
T 1dm5_A 168 HAAEDAAAIYQAGEGQ-IGTDESRFNAVL 195 (315)
T ss_dssp HHHHHHHHHHHHTTTS-SSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCc-CCCcHHHHHHHH
Confidence 4567777766542 344555555544
No 307
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=24.79 E-value=46 Score=25.92 Aligned_cols=119 Identities=13% Similarity=0.044 Sum_probs=55.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH--HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHH
Q 047934 178 AMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIY--TAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAF---SYNLLIQG 252 (344)
Q Consensus 178 tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~ty--n~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~---tyn~LI~a 252 (344)
+.+...++.|+.+.+..+++. .+..++.... .+.+...+..|+.+-+. .+.+.|..++.. -++.|. .
T Consensus 10 ~~l~~A~~~g~~~~v~~ll~~---~~~~~~~~~~~g~t~L~~A~~~~~~~~v~----~Ll~~g~~~~~~~~~g~t~L~-~ 81 (165)
T 3twr_A 10 RQLLEAAKAGDVETVKKLCTV---QSVNCRDIEGRQSTPLHFAAGYNRVSVVE----YLLQHGADVHAKDKGGLVPLH-N 81 (165)
T ss_dssp HHHHHHHHHTCHHHHHHHCCT---TTTTCCCTTTTCCCHHHHHHHTTCHHHHH----HHHHTTCCTTCCCTTSCCHHH-H
T ss_pred HHHHHHHHhCCHHHHHHHHHc---CCCCccccccCCCCHHHHHHHcChHHHHH----HHHhcCCCCCccCCCCCCHHH-H
Confidence 455566677777766665542 1222211111 13444445667754443 344455544432 223333 3
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHH--HHHHHHHHHcCCHHHHHHHHHHHHHCCCccc
Q 047934 253 LYKCNKLEEAVEYCIEMLEAGHSPNVTTF--VGLVDGLCRERGVEKAQSVIATLKEKGFLVN 312 (344)
Q Consensus 253 y~k~g~~~~A~~lf~~M~~~gv~pd~~ty--~~lL~a~~~~G~~e~a~~l~~~M~~~Gi~p~ 312 (344)
.+..|+.+-+ +.+.+.|..++.... .+.|...+..|+.+.+.. +.+.|..++
T Consensus 82 A~~~~~~~~v----~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~----Ll~~ga~~~ 135 (165)
T 3twr_A 82 ACSYGHYEVA----ELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKL----LLQHGADPT 135 (165)
T ss_dssp HHHTTCHHHH----HHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHH----HHHTTCCTT
T ss_pred HHHcCcHHHH----HHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHH----HHHcCCCCc
Confidence 3455666543 344445554432221 123444456677654444 344555443
No 308
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=24.65 E-value=1.5e+02 Score=25.66 Aligned_cols=51 Identities=12% Similarity=0.117 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 047934 226 DAKRIFRKMQSNGIAPN-AFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSP 276 (344)
Q Consensus 226 ~A~~vf~~M~~~gi~pd-~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~p 276 (344)
++..+|..|..+||.-. +.-|-..-..|-..|++++|.++|+.-.+.+-+|
T Consensus 132 ~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 132 EPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp CHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 44455555555544322 2334444444444555555555555554444444
No 309
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=24.02 E-value=1.9e+02 Score=26.14 Aligned_cols=45 Identities=16% Similarity=0.293 Sum_probs=38.8
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 047934 229 RIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAG 273 (344)
Q Consensus 229 ~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~g 273 (344)
++++.+.+.|+.|..+++.-++..+++.=.++.+..+++.+...|
T Consensus 214 ~L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~lriWD~~l~eg 258 (334)
T 2qq8_A 214 KLFAHFKKNNLTPDIYLIDWIFTLYSKSLPLDLACRIWDVFCRDG 258 (334)
T ss_dssp HHHHHHHHTTCCGGGTHHHHHHTTTTTTSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCCccchHHHHHHHHhcccCCHHHHHHHHHHHHHcC
Confidence 466777888999999999999998888888999999999988876
No 310
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=23.83 E-value=2.7e+02 Score=22.01 Aligned_cols=23 Identities=26% Similarity=0.187 Sum_probs=11.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Q 047934 284 LVDGLCRERGVEKAQSVIATLKE 306 (344)
Q Consensus 284 lL~a~~~~G~~e~a~~l~~~M~~ 306 (344)
|--|+.+.|++++|++..+.+.+
T Consensus 84 LAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 84 LTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHT
T ss_pred HHHHHHHhhhHHHHHHHHHHHHh
Confidence 44444555555555555555443
No 311
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=23.77 E-value=37 Score=27.97 Aligned_cols=8 Identities=0% Similarity=-0.168 Sum_probs=3.4
Q ss_pred HHHcCCHH
Q 047934 288 LCRERGVE 295 (344)
Q Consensus 288 ~~~~G~~e 295 (344)
.+..|+.+
T Consensus 184 A~~~~~~~ 191 (240)
T 3eu9_A 184 AVLAGNTT 191 (240)
T ss_dssp HHHHTCHH
T ss_pred HHHcCCHH
Confidence 33444444
No 312
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=23.29 E-value=24 Score=30.01 Aligned_cols=120 Identities=8% Similarity=-0.050 Sum_probs=67.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH-------HHHHHHHHH--HcCCHHHHHHHHHHHHHCC---------C
Q 047934 178 AMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVI-------YTAVVDGFC--KAQKFDDAKRIFRKMQSNG---------I 239 (344)
Q Consensus 178 tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~t-------yn~LI~ay~--k~g~~e~A~~vf~~M~~~g---------i 239 (344)
+.|...++.|+.+....+++.+.+.|..++... .+.|..+.. +.|..+-+..+++.-...+ +
T Consensus 7 ~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~ 86 (260)
T 3jxi_A 7 PILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPF 86 (260)
T ss_dssp HHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCB
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccc
Confidence 345556678888888888888887776666443 345554442 5678777777777644321 0
Q ss_pred C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH----------------HHHHHHHHHHcCCHHHHHHHHH
Q 047934 240 A-PNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTT----------------FVGLVDGLCRERGVEKAQSVIA 302 (344)
Q Consensus 240 ~-pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~t----------------y~~lL~a~~~~G~~e~a~~l~~ 302 (344)
. .|..-++.|.. .+..|+.+-+. .+.+.|..++... -.+.|...+..|+.+.+..+++
T Consensus 87 ~~~d~~g~t~L~~-A~~~g~~~~v~----~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~ 161 (260)
T 3jxi_A 87 RDVYYRGQTALHI-AIERRCKHYVE----LLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTE 161 (260)
T ss_dssp CCSSEESBCHHHH-HHHTTCHHHHH----HHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHH
T ss_pred cccccCCCCHHHH-HHHcCCHHHHH----HHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHh
Confidence 0 01122333433 45567766444 4444666555432 2234555566788665555444
No 313
>1yii_A Annexin A5, annexin V, lipocortin V, endonexin II; membrane binding, matrix vessicle, protein and metal binding protein; 1.42A {Gallus gallus} PDB: 1yj0_A 1ala_A 1hvd_A 1anx_A 1anw_A 1avh_A 1avr_A 1hak_B* 1hvf_A 1hve_A 1hvg_A 1a8a_A* 1a8b_A* 2ie7_A 1g5n_A 2ie6_A 1bcz_A 1n41_A 1bcw_A 2ran_A ...
Probab=23.02 E-value=4.1e+02 Score=23.83 Aligned_cols=157 Identities=11% Similarity=0.096 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHcC--CHHHHHHHHHHHHHcCCCCCH-----HHHHHHHHHHHHcCC-------
Q 047934 158 QEADEIFKKMKETGLIPNAVAMLDGLCKDG--LIQEAMKLFGLMREKGTIPEV-----VIYTAVVDGFCKAQK------- 223 (344)
Q Consensus 158 ~~A~~lf~~M~~~gi~p~~~tli~~~~k~g--~~~~A~~lf~~M~~~g~~pd~-----~tyn~LI~ay~k~g~------- 223 (344)
.+|..+.+.|... -.+..+++..++... .+.+..+.|..+-...+.-+. -.|-.++-++..+.+
T Consensus 90 ~DA~~L~~A~kg~--Gtde~~lieIL~~Rs~~ql~~I~~aY~~~y~~~Le~di~~e~sG~~~~~l~~l~~~~r~~~~~vd 167 (320)
T 1yii_A 90 FDAHALKHAIKGA--GTNEKVLTEILASRTPAEVQNIKQVYMQEYEANLEDKITGETSGHFQRLLVVLLQANRDPDGRVD 167 (320)
T ss_dssp HHHHHHHHHHSSS--SCCHHHHHHHHHHSCHHHHHHHHHHHHHHHSSCHHHHHHHHCCHHHHHHHHHHHTTCCCCSCCCC
T ss_pred HHHHHHHHHhccC--CCchHHHhHHHhcCCHHHHHHHHHHHHHhhCcCHHHHHHhhcCCcHHHHHHHHHhhccCccccCC
Confidence 3566666666433 335667777777654 233444445444322221111 124445555555433
Q ss_pred ----HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCCHHHHHHHHHHHHHc
Q 047934 224 ----FDDAKRIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEA--------GHSPNVTTFVGLVDGLCRE 291 (344)
Q Consensus 224 ----~e~A~~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~--------gv~pd~~ty~~lL~a~~~~ 291 (344)
-.+|..+++.|.. +...|..++..++..-. ..++......|.++-.. ...-|....-..|-.|.+.
T Consensus 168 ~~~a~~dA~~L~~A~~~-~~Gtde~~li~Il~tRs-~~~L~~i~~~Y~~~~g~~L~~~I~~e~sGd~~~~Llalv~~~~~ 245 (320)
T 1yii_A 168 EALVEKDAQVLFRAGEL-KWGTDEETFITILGTRS-VSHLRRVFDKYMTISGFQIEETIDRETSGDLEKLLLAVVKCIRS 245 (320)
T ss_dssp HHHHHHHHHHHHHHHHT-TTCSSHHHHHHHHHHSC-HHHHHHHHHHHHHHHSSCHHHHHCCTTCCHHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHHHhc-CCCCCHHHHHHHHHhCC-HHHHHHHHHHHHHHHCcCHHHHHhhhcCchHHHHHHHHHHhccC
Confidence 1347777777763 23346555554443200 11233334444333221 1122222222222223333
Q ss_pred CCHHHHHHHHHHHHHCCCcccHHHHHHHH
Q 047934 292 RGVEKAQSVIATLKEKGFLVNDKAVREFL 320 (344)
Q Consensus 292 G~~e~a~~l~~~M~~~Gi~p~~~~~~~Ll 320 (344)
...-.|..+++.|.. +..+..++..+|
T Consensus 246 ~~~~~A~~L~~a~~g--~Gtd~~~Liril 272 (320)
T 1yii_A 246 VPAYFAETLYYSMKG--AGTDDDTLIRVM 272 (320)
T ss_dssp HHHHHHHHHHHHHSS--SSCCHHHHHHHH
T ss_pred CcHHHHHHHHHhhcc--CCCcHHHHHHHH
Confidence 334467777777764 444555444444
No 314
>1dm5_A Annexin XII E105K mutant homohexamer; novel PH-dependent hexamerization switch E76, low calcium form; 1.93A {Hydra vulgaris} SCOP: a.65.1.1 PDB: 1aei_A
Probab=22.95 E-value=3.5e+02 Score=24.26 Aligned_cols=25 Identities=24% Similarity=0.252 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHCCCcccHHHHHHHHh
Q 047934 295 EKAQSVIATLKEKGFLVNDKAVREFLD 321 (344)
Q Consensus 295 e~a~~l~~~M~~~Gi~p~~~~~~~Ll~ 321 (344)
--|..++..|. |+..+..+...+|-
T Consensus 247 ~~A~~L~~am~--g~Gtd~~~Liriiv 271 (315)
T 1dm5_A 247 YFAERLHHAMK--GLGTSDKTLIRILV 271 (315)
T ss_dssp HHHHHHHHHHC--TTCCCHHHHHHHHH
T ss_pred HHHHHHHHHhh--cCCCCHHHHhHHHH
Confidence 34666666666 44445555554443
No 315
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=22.33 E-value=77 Score=29.03 Aligned_cols=21 Identities=10% Similarity=0.151 Sum_probs=9.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHH
Q 047934 179 MLDGLCKDGLIQEAMKLFGLM 199 (344)
Q Consensus 179 li~~~~k~g~~~~A~~lf~~M 199 (344)
+|.-|...|+.++|.+.++++
T Consensus 17 ll~Ey~~~~d~~Ea~~ci~el 37 (339)
T 1ug3_A 17 IIEEYLHLNDMKEAVQCVQEL 37 (339)
T ss_dssp HHHHHHHHCCHHHHHHHHHTT
T ss_pred HHHHHHhCCCHHHHHHHHHHc
Confidence 444444444444444444443
No 316
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=21.99 E-value=3.3e+02 Score=22.34 Aligned_cols=24 Identities=8% Similarity=0.158 Sum_probs=18.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHC
Q 047934 284 LVDGLCRERGVEKAQSVIATLKEK 307 (344)
Q Consensus 284 lL~a~~~~G~~e~a~~l~~~M~~~ 307 (344)
+-.+|.+.++.++|..+++.+..+
T Consensus 128 ia~C~~~l~~~~~Ai~~Le~Ip~k 151 (167)
T 3ffl_A 128 LAECYTVLKQDKDAIAILDGIPSR 151 (167)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSCGG
T ss_pred HHHHHHHHCCHHHHHHHHhcCCch
Confidence 666777899999999988776444
No 317
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=21.69 E-value=1.5e+02 Score=27.61 Aligned_cols=80 Identities=11% Similarity=0.100 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHCCCcccHHHHHHHHhc
Q 047934 245 SYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRERG--VEKAQSVIATLKEKGFLVNDKAVREFLDK 322 (344)
Q Consensus 245 tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~--~e~a~~l~~~M~~~Gi~p~~~~~~~Ll~~ 322 (344)
....+|.=|...++.++|..+++++..-... ......++..+.-+.++ .+.+.+++..+.+.|+-........+.+.
T Consensus 219 ki~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf~~v 297 (358)
T 3eiq_C 219 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERI 297 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 4688999999999999999999998643222 23445566666655443 45688889999988887776666666554
Q ss_pred cCC
Q 047934 323 KAP 325 (344)
Q Consensus 323 yak 325 (344)
+..
T Consensus 298 l~~ 300 (358)
T 3eiq_C 298 YNE 300 (358)
T ss_dssp HHH
T ss_pred HHh
Confidence 443
No 318
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=21.68 E-value=1.4e+02 Score=25.84 Aligned_cols=136 Identities=11% Similarity=0.009 Sum_probs=66.6
Q ss_pred HHHHHHCCCCCCH-----HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHH
Q 047934 164 FKKMKETGLIPNA-----VAMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVI---YTAVVDGFCKAQKFDDAKRIFRKMQ 235 (344)
Q Consensus 164 f~~M~~~gi~p~~-----~tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~t---yn~LI~ay~k~g~~e~A~~vf~~M~ 235 (344)
++.+.+.|..++. .|.+...+..|..+-+..+ .+.|..++... +.+.+...+..|..+-+..++
T Consensus 78 v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~L----l~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll---- 149 (285)
T 3kea_A 78 VKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLF----VKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFL---- 149 (285)
T ss_dssp HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH----HHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHH----
T ss_pred HHHHHHCCCCCCCcCCCCCcHHHHHHHcCCHHHHHHH----HhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHH----
Confidence 3444455654432 1455566677776644444 34454443322 235556666777766554444
Q ss_pred HCCCCC-CH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCcccH
Q 047934 236 SNGIAP-NA-FSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNVTTFVGLVDGLCRERGVEKAQSVIATLKEKGFLVND 313 (344)
Q Consensus 236 ~~gi~p-d~-~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~~ty~~lL~a~~~~G~~e~a~~l~~~M~~~Gi~p~~ 313 (344)
+.|..+ +. .-++. +...+..|..+-+.-+++.-..-... |..-.+..|...+..|+.+ +.+.+.+.|..++.
T Consensus 150 ~~g~~~~~~~~g~t~-L~~A~~~g~~~~v~~Ll~~gad~n~~-~~~g~t~~L~~A~~~~~~~----~v~~Ll~~gad~~~ 223 (285)
T 3kea_A 150 SEIPSTFDLAILLSC-IHITIKNGHVDMMILLLDYMTSTNTN-NSLLFIPDIKLAIDNKDIE----MLQALFKYDINIYS 223 (285)
T ss_dssp TTSCTTCCCSTHHHH-HHHHHHTTCHHHHHHHHHHHHHTCTT-CCCBCCTTHHHHHHHTCHH----HHHHHTTSCBCSTT
T ss_pred hCCCccccccCCccH-HHHHHHcChHHHHHHHHHcCCCCCcc-cCCCCChHHHHHHHcCCHH----HHHHHHHcCCCCCC
Confidence 444333 22 33344 44456778887766666554332111 1111122234444556644 44555566766654
No 319
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=21.60 E-value=3.2e+02 Score=24.44 Aligned_cols=45 Identities=9% Similarity=0.174 Sum_probs=23.9
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 047934 229 RIFRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEMLEAG 273 (344)
Q Consensus 229 ~vf~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~~~g 273 (344)
+++..+.+.|+.|..+++..++..+++.=.++.+.++++.+...|
T Consensus 209 ~L~~hL~~~~i~~~~~~~~W~l~lF~~~lp~~~~lrlwD~~l~~g 253 (331)
T 3qye_A 209 DLYNHLEEHEIGPSLYAAPWFLTMFASQFPLGFVARVFDMIFLQG 253 (331)
T ss_dssp HHHHHHHHTTCCGGGTSHHHHHSTTTTTSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHCC
Confidence 344445555555555555555555555444555555555555544
No 320
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=21.35 E-value=52 Score=27.00 Aligned_cols=122 Identities=11% Similarity=0.102 Sum_probs=61.5
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH---HHHHHHHHHHcCCHH
Q 047934 154 SEPPQEADEIFKKMKETGLIPNA-----VAMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVI---YTAVVDGFCKAQKFD 225 (344)
Q Consensus 154 sg~~~~A~~lf~~M~~~gi~p~~-----~tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~t---yn~LI~ay~k~g~~e 225 (344)
.|+++.. +.+.+.|..++. .+.+...++.|+.+- ++.+.+.|..++... ..+.+...+..|+.+
T Consensus 19 ~g~~~~~----~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~----v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~ 90 (240)
T 3eu9_A 19 YGIYERC----RELVEAGYDVRQPDKENVTLLHWAAINNRIDL----VKYYISKGAIVDQLGGDLNSTPLHWATRQGHLS 90 (240)
T ss_dssp TTCHHHH----HHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHH----HHHHHHTTCCTTCCBTTTTBCHHHHHHHHTCHH
T ss_pred cCChHHH----HHHHHcCCCcCCCCCCCCCHHHHHHHhCCHHH----HHHHHHcCCcchhhcCCcCCChhHHHHHcCCHH
Confidence 4555544 444455544322 257777788888764 444555554333211 223445556677766
Q ss_pred HHHHHHHHHHHCCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHHcC
Q 047934 226 DAKRIFRKMQSNGIAPNA---FSYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSPNV---TTFVGLVDGLCRER 292 (344)
Q Consensus 226 ~A~~vf~~M~~~gi~pd~---~tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~pd~---~ty~~lL~a~~~~G 292 (344)
-+.. +.+.|..++. ..++. +...+..|..+ +++.+.+.|..++. .-.+.+..++...+
T Consensus 91 ~v~~----Ll~~g~~~~~~~~~g~t~-l~~A~~~~~~~----~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~ 154 (240)
T 3eu9_A 91 MVVQ----LMKYGADPSLIDGEGCSC-IHLAAQFGHTS----IVAYLIAKGQDVDMMDQNGMTPLMWAAYRTH 154 (240)
T ss_dssp HHHH----HHHTTCCTTCCCTTSCCH-HHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHHCC
T ss_pred HHHH----HHHcCCCCcccCCCCCCH-HHHHHHcCHHH----HHHHHHhcCCCccccCCCCCcHHHHHHHhCC
Confidence 4444 4455655543 22233 34445567765 34444555655433 23344555554443
No 321
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=21.02 E-value=2.3e+02 Score=21.86 Aligned_cols=40 Identities=5% Similarity=-0.033 Sum_probs=16.6
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 047934 231 FRKMQSNGIAPNAFSYNLLIQGLYKCNKLEEAVEYCIEML 270 (344)
Q Consensus 231 f~~M~~~gi~pd~~tyn~LI~ay~k~g~~~~A~~lf~~M~ 270 (344)
|+.+.+..+.+++..--.-|..+...++++.|..+...+.
T Consensus 49 fdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~ 88 (118)
T 2yru_A 49 REQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLM 88 (118)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3333333443333333333333444445555544444443
No 322
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=20.86 E-value=51 Score=26.45 Aligned_cols=8 Identities=25% Similarity=0.409 Sum_probs=3.0
Q ss_pred HHHHHcCC
Q 047934 267 IEMLEAGH 274 (344)
Q Consensus 267 ~~M~~~gv 274 (344)
+.+.+.|.
T Consensus 162 ~~Ll~~ga 169 (201)
T 3hra_A 162 KLLMENGA 169 (201)
T ss_dssp HHHHHTTC
T ss_pred HHHHHCCC
Confidence 33333333
No 323
>3rjo_A Endoplasmic reticulum aminopeptidase 1; ERAP1, hydrolase; 2.30A {Homo sapiens}
Probab=20.82 E-value=5e+02 Score=23.98 Aligned_cols=88 Identities=14% Similarity=0.129 Sum_probs=54.1
Q ss_pred HHHHHHHHcCC---HHHHHHHHHHHHHcC----CCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 047934 178 AMLDGLCKDGL---IQEAMKLFGLMREKG----TIPEVV--IYTAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNAFSYNL 248 (344)
Q Consensus 178 tli~~~~k~g~---~~~A~~lf~~M~~~g----~~pd~~--tyn~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~~tyn~ 248 (344)
.++...|..|. .++|.+.|+.....+ +.||.. +|++.+ + .-++-..+++..... .+..-=..
T Consensus 202 ~~l~~ac~~g~~~c~~~A~~~f~~~~~~~~~~~i~~dlr~~Vy~~~~----~--~~~~~~~l~~~y~~s---~~~~ek~~ 272 (419)
T 3rjo_A 202 QLLLLACVHNYQPCVQRAEGYFRKWKESNGNLSLPVDVTLAVFAVGA----Q--STEGWDFLYSKYQFS---LSSTEKSQ 272 (419)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTTTCSCCCGGGHHHHHHHHT----T--SHHHHHHHHHHHHHC---CCHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhhCCCCCCCCCCcceeEEeeee----C--CHHHHHHHHHHHhcC---CCHHHHHH
Confidence 36667777775 457788887766542 555543 222222 1 234445566665554 24555667
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCC
Q 047934 249 LIQGLYKCNKLEEAVEYCIEMLEAGH 274 (344)
Q Consensus 249 LI~ay~k~g~~~~A~~lf~~M~~~gv 274 (344)
++.+++...+.....++++......+
T Consensus 273 ll~aL~~s~d~~ll~~~L~~~l~~~~ 298 (419)
T 3rjo_A 273 IEFALCRTQNKEKLQWLLDESFKGDK 298 (419)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHTSS
T ss_pred HHHHcCCCCCHHHHHHHHHHHhCCCC
Confidence 88888888888888888877766543
No 324
>4evf_A Alpha-1 giardin, giardin subunit alpha-1; annexin, calcium-binding protein, membrane-binding protein, binding protein; 1.90A {Giardia intestinalis} PDB: 4evh_A
Probab=20.77 E-value=4.4e+02 Score=23.30 Aligned_cols=75 Identities=9% Similarity=-0.012 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHcCC--HHHHHHHHHHHHHcCCCCC------HHHHHHHHHHHHHcCCHHHHHH
Q 047934 158 QEADEIFKKMKETGLIPNAVAMLDGLCKDGL--IQEAMKLFGLMREKGTIPE------VVIYTAVVDGFCKAQKFDDAKR 229 (344)
Q Consensus 158 ~~A~~lf~~M~~~gi~p~~~tli~~~~k~g~--~~~A~~lf~~M~~~g~~pd------~~tyn~LI~ay~k~g~~e~A~~ 229 (344)
++|..+.+.|. | .|..++|..++.... ..+..+.|..+-...+.-+ .--|-.+|-++....-..+|..
T Consensus 6 ~da~~L~~A~k--G--tde~~li~IL~~rs~~qr~~I~~~Y~~~yg~~L~~~lk~el~sG~f~~~l~~l~~~~~~~dA~~ 81 (295)
T 4evf_A 6 DIANELKQAID--A--KDEVQIAFIASEYSAESREKIAKAYVASYGKELPDDIKKALKGGSEESLLMDLFSDRHEVRAQH 81 (295)
T ss_dssp HHHHHHHHHHH--T--TCHHHHHHHHHTSCHHHHHHHHHHHHHHHSSCHHHHHHHHSCCSHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHc--C--CCHHHHHHHHhCCCHHHHHHHHHHHHHHHCcCHHHHHHhhccCCCHHHHHHHHccCchHHHHHH
Confidence 57778888887 5 478888888887643 2334444554432211100 0123445555544444456777
Q ss_pred HHHHHHH
Q 047934 230 IFRKMQS 236 (344)
Q Consensus 230 vf~~M~~ 236 (344)
+.+.|..
T Consensus 82 L~~A~kg 88 (295)
T 4evf_A 82 IRDALSG 88 (295)
T ss_dssp HHHHHHS
T ss_pred HHHHhhC
Confidence 7777754
No 325
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=20.65 E-value=3.9e+02 Score=22.64 Aligned_cols=68 Identities=12% Similarity=0.024 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCcccH
Q 047934 245 SYNLLIQGLYKCNKLEEAVEYCIEMLEAGHSP-NVTTFVGLVDGLCRERGVEKAQSVIATLKEKGFLVND 313 (344)
Q Consensus 245 tyn~LI~ay~k~g~~~~A~~lf~~M~~~gv~p-d~~ty~~lL~a~~~~G~~e~a~~l~~~M~~~Gi~p~~ 313 (344)
.|-..++.+ .++...++.++|..|...|+-- -..-|...-..+...|++.+|.+++..=++.+-.|-.
T Consensus 82 lWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~~ 150 (202)
T 3esl_A 82 IWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPYN 150 (202)
T ss_dssp HHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred HHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 444444433 2455778889999998887754 3555777777778889999999999888888887764
No 326
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=20.41 E-value=1.5e+02 Score=22.78 Aligned_cols=116 Identities=17% Similarity=0.131 Sum_probs=58.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH--HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHH
Q 047934 178 AMLDGLCKDGLIQEAMKLFGLMREKGTIPEVVIY--TAVVDGFCKAQKFDDAKRIFRKMQSNGIAPNA---FSYNLLIQG 252 (344)
Q Consensus 178 tli~~~~k~g~~~~A~~lf~~M~~~g~~pd~~ty--n~LI~ay~k~g~~e~A~~vf~~M~~~gi~pd~---~tyn~LI~a 252 (344)
+.+...+..|..+- ++.+.+.|..++.... .+.+...+..|+.+-+..+++ .|..++. .-++.|. .
T Consensus 38 t~L~~A~~~~~~~~----v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~~~~g~t~L~-~ 108 (167)
T 3v31_A 38 TPLMWAAAHGQIAV----VEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLD----CGVDVNEYDWNGGTPLL-Y 108 (167)
T ss_dssp CHHHHHHHTTCHHH----HHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHH----HTCCTTCCCTTSCCHHH-H
T ss_pred CHHHHHHHCCCHHH----HHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHH----CCCCCCcCCCCCCCHHH-H
Confidence 45666667777654 4444555654442211 234444556677665554443 3444332 2233333 3
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHH--HHHHHHHHHcCCHHHHHHHHHHHHH
Q 047934 253 LYKCNKLEEAVEYCIEMLEAGHSPNVTTF--VGLVDGLCRERGVEKAQSVIATLKE 306 (344)
Q Consensus 253 y~k~g~~~~A~~lf~~M~~~gv~pd~~ty--~~lL~a~~~~G~~e~a~~l~~~M~~ 306 (344)
.+..|..+-+.. +.+.|..++.... .+.+...+..|..+.+..+.+...+
T Consensus 109 A~~~~~~~~v~~----Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~ 160 (167)
T 3v31_A 109 AVHGNHVKCVKM----LLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLK 160 (167)
T ss_dssp HHHTTCHHHHHH----HHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHH----HHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHHHHH
Confidence 445566654443 3445554432221 1345555667887777777766544
Done!