BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 047939
         (314 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2NPS|B Chain B, Crystal Structure Of The Early Endosomal Snare Complex
          Length = 71

 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 36/48 (75%)

Query: 241 VNEVFKDLAVLVHEQGTIIDDIGSHIENSQVATAQGKSQLVKAAKTQR 288
           VN++FKDLA+++H+QG +ID I +++E+S+V   +   QL +AA  Q+
Sbjct: 18  VNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERASDQLQRAAYYQK 65


>pdb|1GL2|B Chain B, Crystal Structure Of An Endosomal Snare Core Complex
          Length = 65

 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 20/45 (44%), Positives = 33/45 (73%)

Query: 241 VNEVFKDLAVLVHEQGTIIDDIGSHIENSQVATAQGKSQLVKAAK 285
           +NE+FKDL +++HEQG +ID I +++E+++V   Q   QL +AA 
Sbjct: 21  INEIFKDLGMMIHEQGDVIDSIEANVESAEVHVQQANQQLSRAAN 65


>pdb|2DNX|A Chain A, Solution Structure Of Rsgi Ruh-063, An N-Terminal Domain
           Of Syntaxin 12 From Human Cdna
          Length = 130

 Score = 36.2 bits (82), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 27/102 (26%), Positives = 46/102 (45%), Gaps = 2/102 (1%)

Query: 68  QAVASGIFQINTAVSTFQRLVNTLGTPKDTPELREKIHKTRLHIGQLVKDTSAKLKQASE 127
           Q  +  I +I+ A +  + L++ LGT +D+ +L+E + + +    QL K+T+  LK+   
Sbjct: 17  QTCSGNIQRISQATAQIKNLMSQLGTKQDSSKLQENLQQLQHSTNQLAKETNELLKELGS 76

Query: 128 TDHHAQVSXXXXX--XXXXXXXXFQAVLKEFQKAQRLAAERE 167
                  S               F A L  FQ  QR  +E+E
Sbjct: 77  LPLPLSTSEQRQQRLQKERLMNDFSAALNNFQAVQRRVSEKE 118


>pdb|2XHE|B Chain B, Crystal Structure Of The Unc18-Syntaxin 1 Complex From
           Monosiga Brevicollis
          Length = 279

 Score = 30.8 bits (68), Expect = 1.00,   Method: Compositional matrix adjust.
 Identities = 17/49 (34%), Positives = 27/49 (55%)

Query: 241 VNEVFKDLAVLVHEQGTIIDDIGSHIENSQVATAQGKSQLVKAAKTQRS 289
           ++E+F D++ LV  QG +ID I   +E S     +   Q+V+A   Q S
Sbjct: 229 LHEMFTDMSTLVASQGEMIDRIEFSVEQSHNYVKKATEQVVQARHYQES 277


>pdb|1URQ|B Chain B, Crystal Structure Of Neuronal Q-Snares In Complex With
           R-Snare Motif Of Tomosyn
          Length = 75

 Score = 30.4 bits (67), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 16/47 (34%), Positives = 28/47 (59%)

Query: 241 VNEVFKDLAVLVHEQGTIIDDIGSHIENSQVATAQGKSQLVKAAKTQ 287
           ++++F D+A+LV  QG +ID I  ++E++     +  S   KA K Q
Sbjct: 28  LHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQ 74


>pdb|3C98|B Chain B, Revised Structure Of The Munc18a-Syntaxin1 Complex
          Length = 279

 Score = 30.4 bits (67), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 16/47 (34%), Positives = 28/47 (59%)

Query: 241 VNEVFKDLAVLVHEQGTIIDDIGSHIENSQVATAQGKSQLVKAAKTQ 287
           ++++F D+A+LV  QG +ID I  ++E++     +  S   KA K Q
Sbjct: 224 LHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQ 270


>pdb|3HD7|B Chain B, Helical Extension Of The Neuronal Snare Complex Into The
           Membrane, Spacegroup C 1 2 1
 pdb|3HD7|F Chain F, Helical Extension Of The Neuronal Snare Complex Into The
           Membrane, Spacegroup C 1 2 1
 pdb|3IPD|B Chain B, Helical Extension Of The Neuronal Snare Complex Into The
           Membrane, Spacegroup I 21 21 21
 pdb|3IPD|F Chain F, Helical Extension Of The Neuronal Snare Complex Into The
           Membrane, Spacegroup I 21 21 21
          Length = 109

 Score = 29.6 bits (65), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 16/47 (34%), Positives = 28/47 (59%)

Query: 241 VNEVFKDLAVLVHEQGTIIDDIGSHIENSQVATAQGKSQLVKAAKTQ 287
           ++++F D+A+LV  QG +ID I  ++E++     +  S   KA K Q
Sbjct: 33  LHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQ 79


>pdb|1JTH|B Chain B, Crystal Structure And Biophysical Properties Of A Complex
           Between The N-Terminal Region Of Snap25 And The Snare
           Region Of Syntaxin 1a
 pdb|1JTH|D Chain D, Crystal Structure And Biophysical Properties Of A Complex
           Between The N-Terminal Region Of Snap25 And The Snare
           Region Of Syntaxin 1a
          Length = 77

 Score = 28.9 bits (63), Expect = 3.8,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 28/47 (59%)

Query: 241 VNEVFKDLAVLVHEQGTIIDDIGSHIENSQVATAQGKSQLVKAAKTQ 287
           ++++F D+A+LV  QG +ID I  ++E++     +  S   KA K Q
Sbjct: 22  LHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQ 68


>pdb|1SFC|B Chain B, Neuronal Synaptic Fusion Complex
 pdb|1SFC|F Chain F, Neuronal Synaptic Fusion Complex
 pdb|1SFC|J Chain J, Neuronal Synaptic Fusion Complex
          Length = 83

 Score = 28.9 bits (63), Expect = 4.3,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 28/47 (59%)

Query: 241 VNEVFKDLAVLVHEQGTIIDDIGSHIENSQVATAQGKSQLVKAAKTQ 287
           ++++F D+A+LV  QG +ID I  ++E++     +  S   KA K Q
Sbjct: 33  LHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQ 79


>pdb|1HVV|A Chain A, Self-Association Of The H3 Region Of Syntaxin 1a:
           Implications For Snare Complex Assembly
 pdb|1HVV|B Chain B, Self-Association Of The H3 Region Of Syntaxin 1a:
           Implications For Snare Complex Assembly
 pdb|1HVV|C Chain C, Self-Association Of The H3 Region Of Syntaxin 1a:
           Implications For Snare Complex Assembly
 pdb|1HVV|D Chain D, Self-Association Of The H3 Region Of Syntaxin 1a:
           Implications For Snare Complex Assembly
          Length = 75

 Score = 28.5 bits (62), Expect = 5.3,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 28/47 (59%)

Query: 241 VNEVFKDLAVLVHEQGTIIDDIGSHIENSQVATAQGKSQLVKAAKTQ 287
           ++++F D+A+LV  QG +ID I  ++E++     +  S   KA K Q
Sbjct: 23  LHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQ 69


>pdb|1N7S|B Chain B, High Resolution Structure Of A Truncated Neuronal Snare
           Complex
          Length = 68

 Score = 27.7 bits (60), Expect = 8.5,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 27/45 (60%)

Query: 241 VNEVFKDLAVLVHEQGTIIDDIGSHIENSQVATAQGKSQLVKAAK 285
           ++++F D+A+LV  QG +ID I  ++E++     +  S   KA K
Sbjct: 24  LHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVK 68


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.316    0.127    0.343 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,172,836
Number of Sequences: 62578
Number of extensions: 188949
Number of successful extensions: 476
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 460
Number of HSP's gapped (non-prelim): 16
length of query: 314
length of database: 14,973,337
effective HSP length: 99
effective length of query: 215
effective length of database: 8,778,115
effective search space: 1887294725
effective search space used: 1887294725
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)