Query 047939
Match_columns 314
No_of_seqs 175 out of 1272
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 04:46:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047939.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047939hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0811 SNARE protein PEP12/VA 100.0 1.5E-41 3.3E-46 307.0 29.9 246 61-313 17-264 (269)
2 KOG0810 SNARE protein Syntaxin 100.0 2.1E-38 4.5E-43 291.3 27.0 245 58-313 33-290 (297)
3 KOG0809 SNARE protein TLG2/Syn 100.0 1.3E-32 2.8E-37 246.4 26.5 239 60-312 56-301 (305)
4 COG5074 t-SNARE complex subuni 100.0 3E-28 6.6E-33 211.0 22.2 235 63-309 23-266 (280)
5 COG5325 t-SNARE complex subuni 100.0 9.1E-28 2E-32 213.7 24.0 235 63-312 36-278 (283)
6 KOG0812 SNARE protein SED5/Syn 99.8 3.5E-17 7.6E-22 146.6 24.6 242 61-310 41-308 (311)
7 PF14523 Syntaxin_2: Syntaxin- 99.6 1.1E-14 2.4E-19 114.7 13.6 101 70-170 1-101 (102)
8 PF05739 SNARE: SNARE domain; 99.5 3.9E-14 8.4E-19 101.8 9.3 63 226-288 1-63 (63)
9 smart00503 SynN Syntaxin N-ter 99.5 2.3E-13 5E-18 109.4 13.3 108 61-168 4-117 (117)
10 cd00179 SynN Syntaxin N-termin 99.5 7.2E-13 1.6E-17 111.5 14.0 109 61-169 2-117 (151)
11 cd00193 t_SNARE Soluble NSF (N 99.4 1.5E-12 3.2E-17 92.1 7.4 59 225-283 2-60 (60)
12 smart00397 t_SNARE Helical reg 99.3 1.8E-11 3.9E-16 88.0 8.4 62 222-283 5-66 (66)
13 KOG3202 SNARE protein TLG1/Syn 99.2 5.2E-08 1.1E-12 87.2 25.7 223 60-310 5-232 (235)
14 PF00804 Syntaxin: Syntaxin; 98.9 1.2E-08 2.6E-13 79.7 10.5 93 61-153 3-103 (103)
15 KOG3894 SNARE protein Syntaxin 98.6 0.00012 2.5E-09 67.6 26.3 82 224-305 227-308 (316)
16 PF00957 Synaptobrevin: Synapt 97.7 0.001 2.2E-08 50.8 11.7 55 229-283 3-57 (89)
17 KOG3385 V-SNARE [Intracellular 97.6 0.00041 8.9E-09 54.9 8.7 83 225-309 32-114 (118)
18 KOG0860 Synaptobrevin/VAMP-lik 97.3 0.0074 1.6E-07 48.1 11.8 43 230-272 30-72 (116)
19 KOG0810 SNARE protein Syntaxin 97.0 0.053 1.2E-06 50.7 16.4 239 65-314 33-288 (297)
20 COG5074 t-SNARE complex subuni 96.9 0.27 5.9E-06 43.9 19.2 78 228-307 191-268 (280)
21 KOG0811 SNARE protein PEP12/VA 96.6 0.57 1.2E-05 43.2 21.8 86 221-310 179-265 (269)
22 PF09753 Use1: Membrane fusion 96.2 0.12 2.5E-06 47.3 13.0 51 230-283 171-221 (251)
23 KOG0809 SNARE protein TLG2/Syn 95.4 0.42 9.2E-06 44.1 13.0 92 222-313 204-299 (305)
24 PF00957 Synaptobrevin: Synapt 94.9 0.61 1.3E-05 35.3 10.8 18 224-241 26-43 (89)
25 COG5325 t-SNARE complex subuni 94.2 4.5 9.8E-05 37.2 19.8 79 223-305 196-274 (283)
26 KOG3208 SNARE protein GS28 [In 94.0 4.3 9.3E-05 36.1 21.7 64 103-166 52-115 (231)
27 KOG3065 SNAP-25 (synaptosome-a 93.1 0.38 8.2E-06 44.4 7.5 57 226-282 215-271 (273)
28 KOG3251 Golgi SNAP receptor co 89.6 14 0.00031 32.7 21.1 27 141-167 70-96 (213)
29 PF09889 DUF2116: Uncharacteri 89.4 0.77 1.7E-05 32.3 4.3 27 286-312 31-57 (59)
30 KOG1666 V-SNARE [Intracellular 88.0 19 0.0004 32.0 22.2 56 231-286 137-192 (220)
31 PF11166 DUF2951: Protein of u 87.8 11 0.00023 29.0 11.1 80 229-311 11-91 (98)
32 KOG0860 Synaptobrevin/VAMP-lik 86.6 3.8 8.1E-05 32.8 7.1 19 224-242 52-70 (116)
33 PF09177 Syntaxin-6_N: Syntaxi 83.6 7 0.00015 30.1 7.4 60 61-127 1-60 (97)
34 PF09753 Use1: Membrane fusion 83.2 27 0.00058 31.7 12.2 57 233-292 167-227 (251)
35 KOG0812 SNARE protein SED5/Syn 81.4 27 0.00059 32.4 11.2 73 229-305 234-306 (311)
36 PF03908 Sec20: Sec20; InterP 81.1 22 0.00047 27.0 11.4 37 253-289 32-68 (92)
37 PF06072 Herpes_US9: Alphaherp 79.7 2.9 6.2E-05 29.3 3.4 15 273-287 8-22 (60)
38 PF12352 V-SNARE_C: Snare regi 78.6 20 0.00044 25.2 9.1 56 230-285 9-64 (66)
39 cd00193 t_SNARE Soluble NSF (N 77.3 19 0.00041 24.2 7.3 56 233-288 3-58 (60)
40 KOG0859 Synaptobrevin/VAMP-lik 73.4 13 0.00029 32.6 6.6 35 230-264 126-160 (217)
41 PF09548 Spore_III_AB: Stage I 71.8 13 0.00028 31.8 6.3 40 270-309 130-169 (170)
42 PRK08307 stage III sporulation 71.2 13 0.00029 31.8 6.2 38 272-309 133-170 (171)
43 TIGR02833 spore_III_AB stage I 70.9 14 0.0003 31.7 6.2 38 272-309 132-169 (170)
44 KOG3202 SNARE protein TLG1/Syn 70.2 21 0.00045 32.4 7.4 19 296-314 215-233 (235)
45 PF00523 Fusion_gly: Fusion gl 69.6 7.2 0.00016 39.1 4.8 35 258-293 433-467 (490)
46 PF04505 Dispanin: Interferon- 68.4 3.2 7E-05 31.1 1.6 32 269-300 42-73 (82)
47 PF07106 TBPIP: Tat binding pr 68.4 72 0.0016 26.9 12.3 89 64-168 78-166 (169)
48 PF10717 ODV-E18: Occlusion-de 68.2 5.4 0.00012 29.9 2.7 15 298-312 28-42 (85)
49 KOG2150 CCR4-NOT transcription 65.6 1.6E+02 0.0036 30.0 19.7 94 65-165 5-99 (575)
50 PF03904 DUF334: Domain of unk 64.6 1.1E+02 0.0023 27.6 12.5 76 224-299 66-155 (230)
51 PF05739 SNARE: SNARE domain; 64.5 44 0.00094 23.0 7.8 54 236-289 4-57 (63)
52 PF15605 Toxin_52: Putative to 63.9 69 0.0015 25.1 8.6 57 63-122 45-101 (103)
53 smart00806 AIP3 Actin interact 63.5 1.6E+02 0.0034 29.1 16.6 101 142-255 305-406 (426)
54 KOG3894 SNARE protein Syntaxin 62.9 1.2E+02 0.0027 28.5 11.0 83 232-314 228-313 (316)
55 KOG1666 V-SNARE [Intracellular 62.8 20 0.00044 31.8 5.6 23 266-288 165-187 (220)
56 KOG3065 SNAP-25 (synaptosome-a 62.3 79 0.0017 29.3 9.8 46 240-285 90-135 (273)
57 PF02346 Vac_Fusion: Chordopox 61.4 44 0.00094 23.4 6.0 45 230-274 2-46 (57)
58 PF04156 IncA: IncA protein; 60.2 90 0.002 26.7 9.4 22 142-163 160-181 (191)
59 PF04102 SlyX: SlyX; InterPro 60.0 39 0.00084 24.3 5.9 46 231-276 6-51 (69)
60 PF06143 Baculo_11_kDa: Baculo 59.5 11 0.00024 28.4 3.0 7 278-284 20-26 (84)
61 PF05531 NPV_P10: Nucleopolyhe 59.1 71 0.0015 23.6 8.0 53 64-116 3-56 (75)
62 PF10779 XhlA: Haemolysin XhlA 59.1 65 0.0014 23.2 9.4 28 257-284 20-47 (71)
63 COG3388 Predicted transcriptio 57.8 25 0.00055 27.1 4.7 68 20-91 28-99 (101)
64 PF04505 Dispanin: Interferon- 57.5 3.2 6.9E-05 31.2 -0.2 23 11-33 23-45 (82)
65 PF05478 Prominin: Prominin; 56.4 2.8E+02 0.0061 29.7 25.6 57 228-286 356-412 (806)
66 PF12325 TMF_TATA_bd: TATA ele 56.3 33 0.00071 27.7 5.5 29 221-249 88-116 (120)
67 PF01601 Corona_S2: Coronaviru 55.7 2.6 5.7E-05 42.8 -1.1 49 265-314 519-567 (610)
68 PRK00295 hypothetical protein; 53.4 82 0.0018 22.6 6.9 45 231-275 7-51 (68)
69 KOG3850 Predicted membrane pro 52.8 2.3E+02 0.005 27.6 11.3 49 221-270 299-348 (455)
70 PF03908 Sec20: Sec20; InterP 52.3 1E+02 0.0022 23.3 10.9 12 296-307 72-83 (92)
71 PF10805 DUF2730: Protein of u 52.0 73 0.0016 25.0 6.8 56 66-125 36-91 (106)
72 COG4372 Uncharacterized protei 51.2 2.5E+02 0.0054 27.5 21.8 70 212-285 214-283 (499)
73 COG5278 Predicted periplasmic 51.2 1.8E+02 0.0039 25.8 10.1 11 226-236 105-115 (207)
74 PF09889 DUF2116: Uncharacteri 50.2 40 0.00086 23.7 4.4 31 277-307 25-55 (59)
75 PHA03240 envelope glycoprotein 49.5 13 0.00029 32.9 2.4 21 288-308 208-228 (258)
76 PRK04325 hypothetical protein; 49.3 1E+02 0.0022 22.5 6.8 45 231-275 11-55 (74)
77 cd07643 I-BAR_IMD_MIM Inverse 49.2 2E+02 0.0044 25.9 15.0 12 218-229 177-188 (231)
78 PRK00736 hypothetical protein; 48.8 99 0.0021 22.2 6.8 45 231-275 7-51 (68)
79 PRK02793 phi X174 lysis protei 48.7 1E+02 0.0022 22.4 6.8 45 231-275 10-54 (72)
80 PF11598 COMP: Cartilage oligo 48.4 34 0.00075 22.7 3.6 23 233-255 5-27 (45)
81 smart00397 t_SNARE Helical reg 48.2 84 0.0018 21.2 8.6 56 230-285 6-61 (66)
82 PF05478 Prominin: Prominin; 47.2 1E+02 0.0023 33.0 9.1 45 233-277 354-399 (806)
83 COG4575 ElaB Uncharacterized c 47.1 1.4E+02 0.003 23.5 7.6 48 71-118 11-60 (104)
84 PF00523 Fusion_gly: Fusion gl 46.2 13 0.00029 37.2 2.1 28 258-285 439-466 (490)
85 PF05957 DUF883: Bacterial pro 45.8 1.3E+02 0.0028 22.7 10.7 43 234-276 7-50 (94)
86 PF12911 OppC_N: N-terminal TM 45.3 56 0.0012 21.9 4.6 19 294-312 19-37 (56)
87 PRK10884 SH3 domain-containing 44.7 2.2E+02 0.0048 25.1 11.8 40 243-282 118-157 (206)
88 PF10717 ODV-E18: Occlusion-de 44.4 26 0.00056 26.4 2.9 16 295-310 29-44 (85)
89 COG4847 Uncharacterized protei 43.3 1.5E+02 0.0033 22.9 7.4 47 78-124 56-102 (103)
90 PF05227 CHASE3: CHASE3 domain 43.3 1.6E+02 0.0035 23.1 9.3 93 67-165 41-133 (138)
91 PF09125 COX2-transmemb: Cytoc 43.1 41 0.00089 21.2 3.1 17 294-310 15-31 (38)
92 PF13124 DUF3963: Protein of u 42.6 36 0.00078 21.4 2.8 19 285-303 15-33 (40)
93 PRK00846 hypothetical protein; 42.2 1.4E+02 0.0031 22.1 7.7 46 231-276 15-60 (77)
94 PRK10404 hypothetical protein; 42.2 1.6E+02 0.0036 22.9 10.4 16 276-291 65-80 (101)
95 COG4068 Uncharacterized protei 41.2 82 0.0018 22.1 4.7 10 280-289 33-42 (64)
96 PRK13848 conjugal transfer pro 41.0 1.3E+02 0.0028 23.2 6.1 61 96-160 4-64 (98)
97 PF01017 STAT_alpha: STAT prot 40.8 1.4E+02 0.003 25.7 7.4 55 61-117 124-178 (182)
98 PRK04406 hypothetical protein; 40.7 1.5E+02 0.0031 21.8 6.8 44 231-274 13-56 (75)
99 PF07820 TraC: TraC-like prote 40.7 1.2E+02 0.0025 23.4 6.0 62 97-162 4-65 (92)
100 KOG4025 Putative apoptosis rel 39.9 2.4E+02 0.0053 24.2 9.4 18 75-92 96-113 (207)
101 cd07685 F-BAR_Fes The F-BAR (F 39.8 2.9E+02 0.0063 25.1 9.3 26 102-127 98-123 (237)
102 PF00517 GP41: Retroviral enve 39.6 78 0.0017 27.9 5.8 18 224-241 103-120 (204)
103 PF06789 UPF0258: Uncharacteri 39.5 18 0.0004 30.3 1.6 14 276-289 115-128 (159)
104 PF03310 Cauli_DNA-bind: Cauli 39.0 2.1E+02 0.0045 23.2 7.5 52 67-118 5-57 (121)
105 PRK11637 AmiB activator; Provi 38.9 3.8E+02 0.0083 26.2 24.0 46 224-269 200-245 (428)
106 PF08999 SP_C-Propep: Surfacta 38.3 28 0.0006 26.1 2.2 13 292-304 34-46 (93)
107 PRK07521 flgK flagellar hook-a 38.3 4.2E+02 0.0091 26.5 11.9 79 28-107 28-107 (483)
108 PF01519 DUF16: Protein of unk 38.1 1.8E+02 0.004 22.8 6.8 44 229-272 53-96 (102)
109 KOG0859 Synaptobrevin/VAMP-lik 37.5 90 0.002 27.5 5.5 28 230-267 123-150 (217)
110 PF07889 DUF1664: Protein of u 36.5 2.1E+02 0.0044 23.4 7.2 36 230-265 90-125 (126)
111 PF07544 Med9: RNA polymerase 36.4 77 0.0017 23.6 4.5 29 224-252 54-82 (83)
112 PF11239 DUF3040: Protein of u 36.0 39 0.00084 25.1 2.8 15 258-272 10-24 (82)
113 PRK10132 hypothetical protein; 35.6 2.2E+02 0.0048 22.5 10.8 11 260-270 48-58 (108)
114 PF11657 Activator-TraM: Trans 34.8 2.7E+02 0.0059 23.2 7.9 10 286-295 114-123 (144)
115 PF04065 Not3: Not1 N-terminal 34.5 3.5E+02 0.0076 24.4 11.9 93 65-164 5-98 (233)
116 KOG3251 Golgi SNAP receptor co 34.3 2E+02 0.0043 25.6 7.3 37 252-288 152-188 (213)
117 PF11190 DUF2976: Protein of u 33.9 76 0.0016 24.2 4.0 43 269-311 36-79 (87)
118 PF06024 DUF912: Nucleopolyhed 32.1 39 0.00084 26.3 2.3 7 306-312 75-81 (101)
119 PF04906 Tweety: Tweety; Inte 31.9 88 0.0019 30.7 5.3 9 237-245 126-134 (406)
120 PF05597 Phasin: Poly(hydroxya 31.6 2E+02 0.0043 23.6 6.5 40 75-114 86-128 (132)
121 COG4640 Predicted membrane pro 31.5 44 0.00096 32.5 3.0 28 274-301 30-58 (465)
122 PF14812 PBP1_TM: Transmembran 31.4 2.7 6E-05 31.5 -4.0 11 287-297 61-71 (81)
123 COG1256 FlgK Flagellar hook-as 31.1 4.1E+02 0.0089 27.3 10.0 25 64-88 137-161 (552)
124 PHA02819 hypothetical protein; 31.0 46 0.00099 24.2 2.3 6 290-295 43-48 (71)
125 PF13198 DUF4014: Protein of u 30.0 76 0.0016 23.1 3.3 13 285-297 8-20 (72)
126 PHA02844 putative transmembran 30.0 49 0.0011 24.3 2.3 21 286-306 38-58 (75)
127 PF07432 Hc1: Histone H1-like 29.6 2.8E+02 0.006 22.3 6.6 51 104-155 2-54 (123)
128 PF13747 DUF4164: Domain of un 29.6 2.5E+02 0.0054 21.3 10.5 56 69-124 5-61 (89)
129 PF15106 TMEM156: TMEM156 prot 28.8 59 0.0013 28.9 3.0 23 289-311 172-194 (226)
130 PRK02119 hypothetical protein; 28.5 2.3E+02 0.0051 20.6 7.4 45 231-275 11-55 (73)
131 PF05008 V-SNARE: Vesicle tran 27.9 2.3E+02 0.005 20.3 8.7 29 225-253 21-49 (79)
132 PF15188 CCDC-167: Coiled-coil 27.9 2.7E+02 0.0059 21.1 7.3 59 71-129 4-66 (85)
133 PHA03395 p10 fibrous body prot 27.8 2.8E+02 0.006 21.1 6.9 49 66-114 5-54 (87)
134 PF11593 Med3: Mediator comple 27.6 3.5E+02 0.0075 26.2 8.2 21 142-162 74-94 (379)
135 COG0840 Tar Methyl-accepting c 27.4 4.6E+02 0.01 24.8 9.5 53 225-277 327-379 (408)
136 PRK13673 hypothetical protein; 27.0 1.5E+02 0.0032 23.9 4.9 36 275-310 74-109 (118)
137 PF02167 Cytochrom_C1: Cytochr 26.6 1.6E+02 0.0035 26.4 5.5 42 268-309 167-208 (219)
138 PF03127 GAT: GAT domain; Int 26.6 2.9E+02 0.0063 21.0 12.5 87 66-160 5-91 (100)
139 PF10498 IFT57: Intra-flagella 26.5 5.9E+02 0.013 24.6 13.9 73 94-168 212-287 (359)
140 PHA03046 Hypothetical protein; 25.8 3.1E+02 0.0067 22.5 6.4 53 222-274 77-129 (142)
141 PF11837 DUF3357: Domain of un 25.5 23 0.0005 27.8 0.0 11 291-301 26-36 (106)
142 PF10146 zf-C4H2: Zinc finger- 25.3 5E+02 0.011 23.3 10.6 28 142-169 76-103 (230)
143 PHA02675 ORF104 fusion protein 25.2 3E+02 0.0066 20.7 6.6 33 243-275 44-76 (90)
144 PF08653 DASH_Dam1: DASH compl 25.0 70 0.0015 22.4 2.3 31 64-94 4-34 (58)
145 PF03310 Cauli_DNA-bind: Cauli 24.6 2.8E+02 0.006 22.5 5.9 10 277-286 60-69 (121)
146 KOG2546 Abl interactor ABI-1, 24.4 2.5E+02 0.0053 27.8 6.6 50 225-274 51-100 (483)
147 PF01102 Glycophorin_A: Glycop 24.0 94 0.002 25.2 3.2 17 296-312 66-82 (122)
148 KOG0862 Synaptobrevin/VAMP-lik 23.9 3.8E+02 0.0083 23.9 7.2 84 231-314 120-211 (216)
149 PRK13865 type IV secretion sys 23.8 2.6E+02 0.0056 25.1 6.4 7 289-295 35-41 (229)
150 PRK04654 sec-independent trans 23.5 4.1E+02 0.0089 23.7 7.3 61 62-125 24-84 (214)
151 KOG1962 B-cell receptor-associ 23.4 5.4E+02 0.012 23.0 9.4 61 100-163 149-209 (216)
152 PRK10573 type IV pilin biogene 23.4 2.9E+02 0.0064 26.6 7.3 15 234-248 111-125 (399)
153 PF05713 MobC: Bacterial mobil 23.2 2.2E+02 0.0049 18.5 5.0 19 72-90 3-21 (48)
154 PHA02650 hypothetical protein; 23.1 76 0.0016 23.6 2.3 15 291-305 44-58 (81)
155 KOG2678 Predicted membrane pro 22.9 5.7E+02 0.012 23.1 12.7 14 234-247 156-169 (244)
156 PRK10573 type IV pilin biogene 22.5 4.3E+02 0.0094 25.4 8.2 6 241-246 111-116 (399)
157 PF06143 Baculo_11_kDa: Baculo 22.4 1.9E+02 0.0042 21.8 4.4 16 295-310 41-56 (84)
158 PF06789 UPF0258: Uncharacteri 22.3 22 0.00047 29.9 -0.8 11 282-292 124-134 (159)
159 PF04728 LPP: Lipoprotein leuc 22.1 2.8E+02 0.0061 19.3 5.9 28 258-285 18-45 (56)
160 PF14992 TMCO5: TMCO5 family 21.9 6.5E+02 0.014 23.4 19.6 52 224-275 125-176 (280)
161 PRK15396 murein lipoprotein; P 21.7 3.4E+02 0.0075 20.1 6.7 29 257-285 39-67 (78)
162 KOG4559 Uncharacterized conser 21.7 4E+02 0.0086 20.9 6.7 40 225-268 64-107 (120)
163 PHA03240 envelope glycoprotein 21.6 65 0.0014 28.7 2.0 12 10-21 20-33 (258)
164 PF10749 DUF2534: Protein of u 21.4 1.2E+02 0.0026 22.8 3.0 11 297-307 19-29 (85)
165 TIGR02833 spore_III_AB stage I 21.2 2.7E+02 0.0059 23.7 5.8 45 258-305 125-169 (170)
166 PF03597 CcoS: Cytochrome oxid 21.0 1.1E+02 0.0024 20.2 2.6 15 300-314 9-23 (45)
167 cd00179 SynN Syntaxin N-termin 20.9 4.5E+02 0.0097 21.1 8.8 77 99-177 48-130 (151)
168 PRK15041 methyl-accepting chem 20.7 8.8E+02 0.019 24.5 19.6 54 222-275 433-486 (554)
169 PF05624 LSR: Lipolysis stimul 20.5 48 0.001 22.0 0.7 18 297-314 6-23 (49)
170 PRK08307 stage III sporulation 20.5 2.7E+02 0.0058 23.7 5.6 44 259-305 127-170 (171)
171 TIGR00847 ccoS cytochrome oxid 20.4 1.2E+02 0.0027 20.6 2.7 13 302-314 12-24 (51)
172 PF03961 DUF342: Protein of un 20.3 4.4E+02 0.0094 26.0 7.8 31 62-92 331-361 (451)
173 PF01105 EMP24_GP25L: emp24/gp 20.2 34 0.00074 28.4 0.0 15 228-242 111-125 (183)
No 1
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.5e-41 Score=307.02 Aligned_cols=246 Identities=42% Similarity=0.559 Sum_probs=199.9
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhhHHH
Q 047939 61 NGKQDSTQAVASGIFQINTAVSTFQRLVNTLGTPKDTPELREKIHKTRLHIGQLVKDTSAKLKQASETDHHAQVSADKKI 140 (314)
Q Consensus 61 ~~f~~~~~~i~~~I~~I~~~v~~L~~~~~~L~t~~D~~~lr~~I~~l~~~i~~l~~~~~~~lk~l~~~~~~~~~~r~~k~ 140 (314)
.+|..++++|+..|+.|+..+..|.+.+..+||+.|++++|++++.....+..+++.+...|+++..... ....+..+.
T Consensus 17 ~~~~~l~~~i~~~i~~i~~~~~~l~r~~~~lgt~~ds~~lr~kl~~~~~~~~~~vkdt~~~lke~~~~~~-~~~~~~~k~ 95 (269)
T KOG0811|consen 17 FDFQQLAQEIAANIQRINQQVLSLLRFLNSLGTKSDSPELRDKLHQERLNANQLVKDTSALLKEIDTLRL-ESDLRQLKI 95 (269)
T ss_pred CcHhHHHHHHHHHHHHHhHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhHHHHHHH
Confidence 5799999999999999999999999999999999999999999999999999999999999999998876 344588999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCcccccccccCccchHHHHHHHHHHHHH-HHHHHhh-Hhh
Q 047939 141 ADAKLAKDFQAVLKEFQKAQRLAAERETAYTPFVPQAVLPSSYTAHELDISSDRSAEQHALLVESRRQ-EVVLLDN-EIA 218 (314)
Q Consensus 141 ~~~kL~~~f~~~l~~Fq~~Q~~~~~r~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~eqq~l~~~~~~q-~~~~~~~-E~~ 218 (314)
+.++|.++|..++++|+++|+...+++| .+..++.+..+.....+ +....+........+++ +...... +++
T Consensus 96 ~~~kL~~ef~~~l~efq~vQrk~ae~ek--~~~~a~~s~~s~~~~~~----~~~~~~~~~~~~~~~~q~e~~~q~~e~~~ 169 (269)
T KOG0811|consen 96 QLDKLVDEFSAALKEFQKVQRKSAEREK--IPMVARGSQNSQQLDEE----SPRVDELSNNGSQSQQQLEEQAQDNEILE 169 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHhhc--ccccccccccchhhhhh----hhhhhhhhccchhhhhHHHHHHhhhhhhh
Confidence 9999999999999999999999999988 33222211111000000 00000000001111111 2222223 367
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHH
Q 047939 219 FNEAIIEERELGIQEIQQQIGEVNEVFKDLAVLVHEQGTIIDDIGSHIENSQVATAQGKSQLVKAAKTQRSNSSLTCLLL 298 (314)
Q Consensus 219 ~~e~~i~eR~~eI~~Ie~~I~eLneiF~dLa~lV~eQGe~ID~Ie~Nve~a~~~v~~a~~~L~~A~~~qk~~rk~~~~l~ 298 (314)
++..++++|+++|++||++|.|||+||+|||.||++||++||+||+||+++..||++|+.+|.+|.+||+++|||+||++
T Consensus 170 ~~~~~ieeR~q~I~~lE~dI~dvN~IFkdL~~lV~eQG~~VDsIe~nve~a~~nveqg~~~L~kA~~yq~~~~k~~~~ll 249 (269)
T KOG0811|consen 170 YQLDLIEEREQAIEQLEADIIDVNEIFKDLGSLVHEQGELVDSIEANVENASVNVEQGTENLRKAAKYQRKARKKKCILL 249 (269)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhh
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHh
Q 047939 299 VIFGIVLLILVVVLA 313 (314)
Q Consensus 299 ii~~Ivl~Ivl~vv~ 313 (314)
++++++++|+.++++
T Consensus 250 ~v~~~v~lii~l~i~ 264 (269)
T KOG0811|consen 250 LVGGPVGLIIGLIIA 264 (269)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888888777777654
No 2
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.1e-38 Score=291.35 Aligned_cols=245 Identities=22% Similarity=0.344 Sum_probs=198.7
Q ss_pred ccCCchHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-------
Q 047939 58 NLVNGKQDSTQAVASGIFQINTAVSTFQRLVN-TLGTPKDTPELREKIHKTRLHIGQLVKDTSAKLKQASETD------- 129 (314)
Q Consensus 58 ~~~~~f~~~~~~i~~~I~~I~~~v~~L~~~~~-~L~t~~D~~~lr~~I~~l~~~i~~l~~~~~~~lk~l~~~~------- 129 (314)
.+.++|...+++|...+..+...+.+|++++. .|.++...++++.+++.+..++....+.++.+|+.+.+.+
T Consensus 33 ~~l~~Ff~~ve~Ir~~i~~l~~~~~~l~~~hs~~l~~~~~~~~~k~~l~~~~~~~~~~a~~Ik~kL~~~e~~~~~~~~~~ 112 (297)
T KOG0810|consen 33 SNLEEFFEDVEEIRDDIEKLDEDVEKLQKLHSKSLHSPNADKELKRKLESLVDEIRRRARKIKTKLKALEKENEADETQN 112 (297)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccC
Confidence 34578999999999999999999999999997 4778888899999999999999999999999999998753
Q ss_pred CCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hcCCCCCCCCCCCcccccccccCccchHHHHHHHHH
Q 047939 130 HHAQVSADKKIADAKLAKDFQAVLKEFQKAQRLAAERET-----AYTPFVPQAVLPSSYTAHELDISSDRSAEQHALLVE 204 (314)
Q Consensus 130 ~~~~~~r~~k~~~~kL~~~f~~~l~~Fq~~Q~~~~~r~k-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~eqq~l~~~ 204 (314)
++++..++++++...+++.|.++|..|+.+|..|+++++ +|..+.+.. +++.+.++.--.++...+.+.++.
T Consensus 113 ~~~~~~r~rrtq~~~~~kkf~~~M~~f~~~~~~~r~~~k~~i~Rql~i~~~~~--~~de~ie~~ie~g~~~~f~~~~i~- 189 (297)
T KOG0810|consen 113 RSSAGLRTRRTQTSALSKKLKELMNEFNRTQSKYREEYKERIQRQLFIVGGEE--TTDEEIEEMIESGGSEVFTQKAIQ- 189 (297)
T ss_pred CCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCc--CChHHHHHHHHCCChHHHHHHHHH-
Confidence 245668899999999999999999999999999998654 333344422 122211111011334445555554
Q ss_pred HHHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 047939 205 SRRQEVVLLDNEIAFNEAIIEERELGIQEIQQQIGEVNEVFKDLAVLVHEQGTIIDDIGSHIENSQVATAQGKSQLVKAA 284 (314)
Q Consensus 205 ~~~q~~~~~~~E~~~~e~~i~eR~~eI~~Ie~~I~eLneiF~dLa~lV~eQGe~ID~Ie~Nve~a~~~v~~a~~~L~~A~ 284 (314)
.+++... .+.+ +++||.+|++||++|.|||+||.|||.||..||+|||+||+||++|.+||++|..++++|.
T Consensus 190 -~~~~~~~-----~l~E--iq~Rh~~ik~LEksi~ELhqlFlDMa~LVe~QgEmvd~IE~nV~~A~~~V~~g~~~~~kAv 261 (297)
T KOG0810|consen 190 -DRGQAKQ-----TLAE--IQERHDEIKKLEKSIRELHQLFLDMAVLVESQGEMVDRIENNVENAVDYVEQGVDHLKKAV 261 (297)
T ss_pred -HhhhhHH-----HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2332222 2333 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcchhhHHHHHHHHHHHHHHHHHHHh
Q 047939 285 KTQRSNSSLTCLLLVIFGIVLLILVVVLA 313 (314)
Q Consensus 285 ~~qk~~rk~~~~l~ii~~Ivl~Ivl~vv~ 313 (314)
.|||++|||+||+++|++|+++|++++++
T Consensus 262 ~~qkkaRK~k~i~ii~~iii~~v~v~~i~ 290 (297)
T KOG0810|consen 262 KYQKKARKWKIIIIIILIIIIVVLVVVIV 290 (297)
T ss_pred HHHHHhhhceeeeehHHHHHHHHHhhhhc
Confidence 99999999999888887777766666543
No 3
>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.3e-32 Score=246.44 Aligned_cols=239 Identities=22% Similarity=0.306 Sum_probs=187.9
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC--CCchh
Q 047939 60 VNGKQDSTQAVASGIFQINTAVSTFQRLVNT--LGTPKDTPELREKIHKTRLHIGQLVKDTSAKLKQASETDH--HAQVS 135 (314)
Q Consensus 60 ~~~f~~~~~~i~~~I~~I~~~v~~L~~~~~~--L~t~~D~~~lr~~I~~l~~~i~~l~~~~~~~lk~l~~~~~--~~~~~ 135 (314)
+..+.+.+++|...+.+++.++++|-+.+.. ++++.|..+-...|+.++.+|+++++.|...|+.++.... ...+.
T Consensus 56 pP~wvd~~~ev~~~l~rvrrk~~eLgk~~~Khl~PsF~Dk~ede~~IE~ltq~Itqll~~cqk~iq~~~a~~n~~~~~e~ 135 (305)
T KOG0809|consen 56 PPAWVDVAEEVDYYLSRVRRKIDELGKAHAKHLRPSFSDKREDEHEIEELTQEITQLLQKCQKLIQRLSASLNQLSPSER 135 (305)
T ss_pred CCcccchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHH
Confidence 3446889999999999999999999999873 7888998888999999999999999999999999988653 22334
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC---CCCCCCcccccccccCccchHHHHHHHHHHHHHHHHH
Q 047939 136 ADKKIADAKLAKDFQAVLKEFQKAQRLAAERETAYTPFVP---QAVLPSSYTAHELDISSDRSAEQHALLVESRRQEVVL 212 (314)
Q Consensus 136 r~~k~~~~kL~~~f~~~l~~Fq~~Q~~~~~r~k~~~~~~~---~~~~~~~~~~~~~~~~~~~~~eqq~l~~~~~~q~~~~ 212 (314)
..+++.+.-+..+++.+..+|+..|..|.++.+....... ....|..+..++.++... .+| .++++.
T Consensus 136 ~~~~n~~~~la~~LQ~~s~~fR~~Qs~YLK~l~~~ee~~~~~e~~~~~~~~~~dd~d~~~~--~~q--------e~ql~~ 205 (305)
T KOG0809|consen 136 LLRKNAQGYLALQLQTLSREFRGLQSKYLKRLRNREENSQEYEDSLDNTVDLPDDEDFSDR--TFQ--------EQQLML 205 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhcccchhhhccccccCcchhhhhhh--hHH--------HHHHHH
Confidence 4677889999999999999999999999987543221100 000111111111222111 111 111221
Q ss_pred HhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhcchh
Q 047939 213 LDNEIAFNEAIIEERELGIQEIQQQIGEVNEVFKDLAVLVHEQGTIIDDIGSHIENSQVATAQGKSQLVKAAKTQRSNSS 292 (314)
Q Consensus 213 ~~~E~~~~e~~i~eR~~eI~~Ie~~I~eLneiF~dLa~lV~eQGe~ID~Ie~Nve~a~~~v~~a~~~L~~A~~~qk~~rk 292 (314)
. +-++....||++||.++.++|.||++||+||+.||.+||..||+|||||+++..+++.|.++|.||.+|||+++|
T Consensus 206 ~----e~~~~~~~erE~EV~ql~~sI~dL~~if~DL~~lVvdQGtvvDRIDyNvEqt~~~v~~a~keL~KAe~yQk~~~k 281 (305)
T KOG0809|consen 206 F----ENNEEVVREREKEVTQLVESIYDLNQIFKDLSALVVDQGTVVDRIDYNVEQTQVRVEDALKELHKAERYQKRNKK 281 (305)
T ss_pred H----hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheecchhhhhhhHHhHHHHHHHHHHHHhcCCc
Confidence 1 125577999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 047939 293 LTCLLLVIFGIVLLILVVVL 312 (314)
Q Consensus 293 ~~~~l~ii~~Ivl~Ivl~vv 312 (314)
++|+++++++||++++++++
T Consensus 282 ~~~i~~L~l~ii~llvllil 301 (305)
T KOG0809|consen 282 MKVILMLTLLIIALLVLLIL 301 (305)
T ss_pred eEehHHHHHHHHHHHHHHHh
Confidence 99988888877776666664
No 4
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=99.96 E-value=3e-28 Score=211.00 Aligned_cols=235 Identities=21% Similarity=0.275 Sum_probs=186.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhhHH
Q 047939 63 KQDSTQAVASGIFQINTAVSTFQRLVNTLGTPK---DTPELREKIHKTRLHIGQLVKDTSAKLKQASETDHHAQVSADKK 139 (314)
Q Consensus 63 f~~~~~~i~~~I~~I~~~v~~L~~~~~~L~t~~---D~~~lr~~I~~l~~~i~~l~~~~~~~lk~l~~~~~~~~~~r~~k 139 (314)
|......+..++..+...+.++..++..+-+.. ....++..|+..+.++++|-..++.+++...+.+- ....++
T Consensus 23 f~~~i~si~~n~s~~e~~i~qi~~~h~d~L~Ev~e~~~~~~~~~ldnf~s~t~~Lq~~~k~di~~~e~~~i---hl~~k~ 99 (280)
T COG5074 23 FMNKILSINKNLSVYEKEINQIDNLHKDLLTEVFEEQSRKLRRSLDNFSSQTTDLQRNLKKDIKSAERDGI---HLANKQ 99 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhccc---chhhHH
Confidence 566888888888888888888888888643322 24679999999999999999999999998877643 234567
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhcCCCCCCCCCCCcccccccccCccchHHHHHHHHHHHHHHHHHHh
Q 047939 140 IADAKLAKDFQAVLKEFQKAQRLAAERE-----TAYTPFVPQAVLPSSYTAHELDISSDRSAEQHALLVESRRQEVVLLD 214 (314)
Q Consensus 140 ~~~~kL~~~f~~~l~~Fq~~Q~~~~~r~-----k~~~~~~~~~~~~~~~~~~~~~~~~~~~~eqq~l~~~~~~q~~~~~~ 214 (314)
.|-+..+++|.+++++|..++..|++-+ ++|..+.|+++.++..++ -.+ .+|++.+.|+++...++++.....
T Consensus 100 aQae~~r~Kf~~~I~~yr~i~~~yree~~e~~rrQy~Ia~P~ATEdeve~a-Ind-~nG~qvfsqalL~anr~geAktaL 177 (280)
T COG5074 100 AQAENVRQKFLKLIQDYRIIDSNYREEEKEQARRQYIIAQPEATEDEVEAA-IND-VNGQQVFSQALLNANRRGEAKTAL 177 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhcCCccchHHHHHH-hcc-cchHHHHHHHHHhcCccchHHHHH
Confidence 7778899999999999999999998632 457778887743222211 011 135667778899887777654322
Q ss_pred hHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhcchhhH
Q 047939 215 NEIAFNEAIIEERELGIQEIQQQIGEVNEVFKDLAVLVHEQGTIIDDIGSHIENSQVATAQGKSQLVKAAKTQRSNSSLT 294 (314)
Q Consensus 215 ~E~~~~e~~i~eR~~eI~~Ie~~I~eLneiF~dLa~lV~eQGe~ID~Ie~Nve~a~~~v~~a~~~L~~A~~~qk~~rk~~ 294 (314)
..+++||++|++||++|.||.++|+||+.||.+|.+++|.|+.|++.+..||++|+.++.+|.+|.|++||++
T Consensus 178 -------~Evq~Rh~~ikkiEkt~ael~qLfndm~~~V~eq~e~Vd~I~~~~~~~~~n~~~g~~h~d~AvksaRaaRkkk 250 (280)
T COG5074 178 -------AEVQARHQEIKKIEKTMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQENVEQGVGHTDKAVKSARAARKKK 250 (280)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHhhHhhHHhhHHHhhhhHHHHHHHHHHHHhcc
Confidence 2389999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred H-HHHHHHHHHHHHHH
Q 047939 295 C-LLLVIFGIVLLILV 309 (314)
Q Consensus 295 ~-~l~ii~~Ivl~Ivl 309 (314)
| |+.||++|+++|+.
T Consensus 251 i~c~gI~~iii~viv~ 266 (280)
T COG5074 251 IRCYGICFIIIIVIVV 266 (280)
T ss_pred eehhhhHHHHHHHHHH
Confidence 7 44444444443333
No 5
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=99.96 E-value=9.1e-28 Score=213.71 Aligned_cols=235 Identities=24% Similarity=0.312 Sum_probs=173.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH--HcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhhHHH
Q 047939 63 KQDSTQAVASGIFQINTAVSTFQRLVN--TLGTPKDTPELREKIHKTRLHIGQLVKDTSAKLKQASETDHHAQVSADKKI 140 (314)
Q Consensus 63 f~~~~~~i~~~I~~I~~~v~~L~~~~~--~L~t~~D~~~lr~~I~~l~~~i~~l~~~~~~~lk~l~~~~~~~~~~r~~k~ 140 (314)
|......|...+..++.+.+.+.+... .+..+.|..+=.+.|..+...+++.+..|..-++..-... ....
T Consensus 36 ~i~~~~~v~~~l~~vrr~~~~l~~~y~k~~~p~f~~k~~k~~ei~~L~~kv~~~l~~~~ki~~~~~~~~-------~s~~ 108 (283)
T COG5325 36 FILSAASVDQELTAVRRSISRLGKVYAKHTEPSFSDKSEKEDEIDELSKKVNQDLQRCEKILKTKYKNL-------QSSF 108 (283)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHH
Confidence 567889999999999999999998765 4777888877777888888888888888877776543221 2223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh---cCC-C--CCCCCCCCcccccccccCccchHHHHHHHHHHHHHHHHHHh
Q 047939 141 ADAKLAKDFQAVLKEFQKAQRLAAERETA---YTP-F--VPQAVLPSSYTAHELDISSDRSAEQHALLVESRRQEVVLLD 214 (314)
Q Consensus 141 ~~~kL~~~f~~~l~~Fq~~Q~~~~~r~k~---~~~-~--~~~~~~~~~~~~~~~~~~~~~~~eqq~l~~~~~~q~~~~~~ 214 (314)
...+|..+++..+..++++|++...-++. +.+ . ......|-..+.++.... ....++.+ ++...++
T Consensus 109 ~~~kll~~~nt~~~~~~~iq~~~aq~r~~~~~~~k~l~~~~~~~~~l~eee~e~~~~--~~~sq~~l------qq~~l~~ 180 (283)
T COG5325 109 LQSKLLRDLNTECMEGQRIQQKSAQFRKYQVLQAKFLRNKNNDQHPLEEEEDEESLS--SLGSQQTL------QQQGLSN 180 (283)
T ss_pred HHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHhHHHHhcccccCchhhhhhhhhhh--ccchhhHH------HHhhhhh
Confidence 36788899999999999998886642211 111 1 110111111111111100 00111111 1222355
Q ss_pred hHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhcchhhH
Q 047939 215 NEIAFNEAIIEERELGIQEIQQQIGEVNEVFKDLAVLVHEQGTIIDDIGSHIENSQVATAQGKSQLVKAAKTQRSNSSLT 294 (314)
Q Consensus 215 ~E~~~~e~~i~eR~~eI~~Ie~~I~eLneiF~dLa~lV~eQGe~ID~Ie~Nve~a~~~v~~a~~~L~~A~~~qk~~rk~~ 294 (314)
++.+|+..++.+|.++|.+|+++|.|||+||+||+++|.+||+.||+||+|++++.+|++.|+++|.+|..|||+++||.
T Consensus 181 ee~~~qq~l~~er~~eI~~l~~gI~Eln~IF~dL~~lV~eQG~lVdrID~Ni~~t~~n~k~A~kEL~kA~~hqrrt~k~~ 260 (283)
T COG5325 181 EELEYQQILITERDEEIKNLARGIYELNEIFRDLGSLVGEQGELVDRIDFNIENTSDNLKNANKELEKAPAHQRRTKKCR 260 (283)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhhhhhhHHHHhhHHHHHHhHHHHhhhccch
Confidence 77888888899999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 047939 295 CLLLVIFGIVLLILVVVL 312 (314)
Q Consensus 295 ~~l~ii~~Ivl~Ivl~vv 312 (314)
.|++++++||++++.+++
T Consensus 261 ~~~Llil~vv~lfv~l~~ 278 (283)
T COG5325 261 FYLLLILLVVLLFVSLIK 278 (283)
T ss_pred hhHHHHHHHHHHHHHHHH
Confidence 888888777766665543
No 6
>KOG0812 consensus SNARE protein SED5/Syntaxin 5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.80 E-value=3.5e-17 Score=146.57 Aligned_cols=242 Identities=18% Similarity=0.277 Sum_probs=156.3
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc---CCCc-h--
Q 047939 61 NGKQDSTQAVASGIFQINTAVSTFQRLVNTLGTPKDTPELREKIHKTRLHIGQLVKDTSAKLKQASETD---HHAQ-V-- 134 (314)
Q Consensus 61 ~~f~~~~~~i~~~I~~I~~~v~~L~~~~~~L~t~~D~~~lr~~I~~l~~~i~~l~~~~~~~lk~l~~~~---~~~~-~-- 134 (314)
++|...+..|...|.+.-.+++.|-.+.+.-.-+.|.+ -+|..++.-+++-+..+...|-++.... ++.+ .
T Consensus 41 seF~~~A~~Ig~~is~T~~kl~kLa~lAKrks~f~Dr~---VeI~eLT~iikqdi~sln~~i~~Lqei~~~~gn~s~~~~ 117 (311)
T KOG0812|consen 41 SEFNKKASRIGKEISQTGAKLEKLAQLAKRKSLFDDRP---VEIQELTFIIKQDITSLNSQIAQLQEIVKANGNLSNKQL 117 (311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcc---hhhHHHHHHHhcchHHHHHHHHHHHHHHHHhccccchHh
Confidence 68999999999999999999999999999887777775 4777788777888777777766665542 2111 1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhhcC----CCCC--CCCCCCcccccccccCccchHHHHHH
Q 047939 135 SADKKIADAKLAKDFQAVLKEFQKAQR-------LAAERETAYT----PFVP--QAVLPSSYTAHELDISSDRSAEQHAL 201 (314)
Q Consensus 135 ~r~~k~~~~kL~~~f~~~l~~Fq~~Q~-------~~~~r~k~~~----~~~~--~~~~~~~~~~~~~~~~~~~~~eqq~l 201 (314)
..+.++.+..|...+..+...|+.+-. +.+.|...+. ...+ .......+.... .+.+....-++++
T Consensus 118 ~~Hs~~vV~~Lqs~la~is~~fk~VLE~Rtenmka~k~R~dkfs~~~a~~~a~p~~n~~a~~~~~~-~l~~~~~~~sq~~ 196 (311)
T KOG0812|consen 118 VQHSKNVVVSLQSKLANISKDFKDVLEIRTENMKAVKNRRDKFSASYASLNANPVSNSAARLHPLK-LLVDPKDEASQDV 196 (311)
T ss_pred hhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhHHHHhccccCCCCCcccCcccccCCchh-hhcCchhhccccc
Confidence 234455666666666666666666632 2333322211 1111 000000000000 0000000000000
Q ss_pred H-----H--HHHHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhHHHHHHHHH
Q 047939 202 L-----V--ESRRQEVVLLDNEIAFNEAIIEERELGIQEIQQQIGEVNEVFKDLAVLVHEQGTIIDDIGSHIENSQVATA 274 (314)
Q Consensus 202 ~-----~--~~~~q~~~~~~~E~~~~e~~i~eR~~eI~~Ie~~I~eLneiF~dLa~lV~eQGe~ID~Ie~Nve~a~~~v~ 274 (314)
. . ..+.+++..+++ .+.++++|.+++.+||.+|.||-.||.+||+||.+|||++.+||+||+.+..|++
T Consensus 197 ~~ln~gd~~~~qqqQm~ll~e----s~~Y~Q~R~~~~q~IEstIsElG~IF~QLA~mVseQ~E~i~RID~nv~ds~lnI~ 272 (311)
T KOG0812|consen 197 ESLNMGDSSNPQQQQMALLDE----SDEYVQERAKTMQNIESTISELGGIFQQLASMVSEQEETIQRIDDNVDDSDLNIE 272 (311)
T ss_pred ccccccCCCCCHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhH
Confidence 0 0 001122222222 2457999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHH
Q 047939 275 QGKSQLVKAAKTQRSNSSLTCLLLVIFGIVLLILVV 310 (314)
Q Consensus 275 ~a~~~L~~A~~~qk~~rk~~~~l~ii~~Ivl~Ivl~ 310 (314)
.|..+|.|.-+.-+++|+.+.-++.|++|+++|+++
T Consensus 273 gA~~ellKy~e~vSSNRwLmvkiF~i~ivFflvfvl 308 (311)
T KOG0812|consen 273 GAHSELLKYFERVSSNRWLMVKIFGILIVFFLVFVL 308 (311)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHH
Confidence 999999999999989887766554444444433333
No 7
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A.
Probab=99.62 E-value=1.1e-14 Score=114.68 Aligned_cols=101 Identities=43% Similarity=0.642 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhhHHHHHHHHHHHH
Q 047939 70 VASGIFQINTAVSTFQRLVNTLGTPKDTPELREKIHKTRLHIGQLVKDTSAKLKQASETDHHAQVSADKKIADAKLAKDF 149 (314)
Q Consensus 70 i~~~I~~I~~~v~~L~~~~~~L~t~~D~~~lr~~I~~l~~~i~~l~~~~~~~lk~l~~~~~~~~~~r~~k~~~~kL~~~f 149 (314)
|+.+|++|+.+++.|+++++.|||++|++++|++|+.++..++++++.+...|+.+.........++..+.+.+||.++|
T Consensus 1 is~~l~~in~~v~~l~k~~~~lGt~~Ds~~lR~~i~~~~~~~~~l~k~~~~~l~~l~~~~~~~~~~~~~k~~~~KL~~df 80 (102)
T PF14523_consen 1 ISSNLFKINQNVSQLEKLVNQLGTPRDSQELREKIHQLIQKTNQLIKEISELLKKLNSLSSDRSNDRQQKLQREKLSRDF 80 (102)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHH-SSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSH----HHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHhCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999988322456788999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhc
Q 047939 150 QAVLKEFQKAQRLAAERETAY 170 (314)
Q Consensus 150 ~~~l~~Fq~~Q~~~~~r~k~~ 170 (314)
+.++++|+++|+.|.++++.+
T Consensus 81 ~~~l~~fq~~q~~~~~~~k~~ 101 (102)
T PF14523_consen 81 KEALQEFQKAQRRYAEKEKQT 101 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcc
Confidence 999999999999999998763
No 8
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=99.55 E-value=3.9e-14 Score=101.78 Aligned_cols=63 Identities=30% Similarity=0.526 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhHHHHHHHHHHHHHHHHHHHHHhh
Q 047939 226 ERELGIQEIQQQIGEVNEVFKDLAVLVHEQGTIIDDIGSHIENSQVATAQGKSQLVKAAKTQR 288 (314)
Q Consensus 226 eR~~eI~~Ie~~I~eLneiF~dLa~lV~eQGe~ID~Ie~Nve~a~~~v~~a~~~L~~A~~~qk 288 (314)
||+++|..|+++|.+|++||.+|+.+|.+||++||+|++|++.+..++..|+.+|.+|.+|+|
T Consensus 1 e~d~~l~~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~ka~~~~k 63 (63)
T PF05739_consen 1 ERDEELDELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRANENLKKGNKKLKKALKYQK 63 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 689999999999999999999999999999999999999999999999999999999999986
No 9
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=99.52 E-value=2.3e-13 Score=109.42 Aligned_cols=108 Identities=32% Similarity=0.447 Sum_probs=98.0
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC-----CCch
Q 047939 61 NGKQDSTQAVASGIFQINTAVSTFQRLVNTLGTPKDT-PELREKIHKTRLHIGQLVKDTSAKLKQASETDH-----HAQV 134 (314)
Q Consensus 61 ~~f~~~~~~i~~~I~~I~~~v~~L~~~~~~L~t~~D~-~~lr~~I~~l~~~i~~l~~~~~~~lk~l~~~~~-----~~~~ 134 (314)
++|...+++|...|+.|+.++..|++++..++++.|. +.++.+++.+..+++.+++.|+..|+.+...+. ++++
T Consensus 4 ~~F~~~v~~I~~~I~~i~~~v~~l~~l~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~lk~l~~~~~~~~~~~~~~ 83 (117)
T smart00503 4 DEFFEKVEEIRANIQKISQNVAELQKLHEELLTPPDADKELREKLERLIDDIKRLAKEIRAKLKELEKENLENRASGSAS 83 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhcccCCHh
Confidence 5799999999999999999999999999988877765 789999999999999999999999999987643 2356
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047939 135 SADKKIADAKLAKDFQAVLKEFQKAQRLAAERET 168 (314)
Q Consensus 135 ~r~~k~~~~kL~~~f~~~l~~Fq~~Q~~~~~r~k 168 (314)
.|++++++++|.++|+++|.+||.+|+.|++++|
T Consensus 84 ~r~~~~q~~~L~~~f~~~m~~fq~~Q~~~~~~~k 117 (117)
T smart00503 84 DRTRKAQTEKLRKKFKEVMNEFQRLQRKYREREK 117 (117)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 7899999999999999999999999999998764
No 10
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=99.49 E-value=7.2e-13 Score=111.46 Aligned_cols=109 Identities=29% Similarity=0.403 Sum_probs=99.8
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC------CCc
Q 047939 61 NGKQDSTQAVASGIFQINTAVSTFQRLVNTLGTPKD-TPELREKIHKTRLHIGQLVKDTSAKLKQASETDH------HAQ 133 (314)
Q Consensus 61 ~~f~~~~~~i~~~I~~I~~~v~~L~~~~~~L~t~~D-~~~lr~~I~~l~~~i~~l~~~~~~~lk~l~~~~~------~~~ 133 (314)
++|..+++.|...|+.|+.+++.|+++++.+++..| .+.++.+|+.+..+++.+++.++..|+.|...+. +++
T Consensus 2 ~~F~~~v~~I~~~i~~i~~~v~~l~~l~~~~~t~~~~~~~~~~~l~~~~~~~~~~~~~ik~~lk~l~~~~~~~~~~~~s~ 81 (151)
T cd00179 2 EEFFEEVEEIRGNIDKISEDVEELQKLHSQLLTAPDADPELKQELESLVQEIKKLAKEIKGKLKELEESNEQNEALNGSS 81 (151)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcH
Confidence 469999999999999999999999999999888877 8889999999999999999999999999987643 235
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 047939 134 VSADKKIADAKLAKDFQAVLKEFQKAQRLAAERETA 169 (314)
Q Consensus 134 ~~r~~k~~~~kL~~~f~~~l~~Fq~~Q~~~~~r~k~ 169 (314)
..|++++++.+|+++|+++|++|+.+|..|++++|.
T Consensus 82 ~~r~~~~q~~~L~~~f~~~m~~fq~~Q~~~~~~~k~ 117 (151)
T cd00179 82 VDRIRKTQHSGLSKKFVEVMTEFNKAQRKYRERYKE 117 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999999999999999988764
No 11
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent
Probab=99.38 E-value=1.5e-12 Score=92.10 Aligned_cols=59 Identities=32% Similarity=0.626 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhHHHHHHHHHHHHHHHHHH
Q 047939 225 EERELGIQEIQQQIGEVNEVFKDLAVLVHEQGTIIDDIGSHIENSQVATAQGKSQLVKA 283 (314)
Q Consensus 225 ~eR~~eI~~Ie~~I~eLneiF~dLa~lV~eQGe~ID~Ie~Nve~a~~~v~~a~~~L~~A 283 (314)
++|++++..|+.+|.+|++||.+|+.+|.+||++||+|++|++.+..+++.|..+|.+|
T Consensus 2 ~e~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~~~~~~~~~~~~~~l~ka 60 (60)
T cd00193 2 QERDEELEQLEASIGELKQIFLDLGTEVEEQGELLDRIEDNVDNADVNVKRANKRLKKA 60 (60)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 58999999999999999999999999999999999999999999999999999999875
No 12
>smart00397 t_SNARE Helical region found in SNAREs. All alpha-helical motifs that form twisted and parallel four-helix bundles in target soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor proteins. This motif found in "Q-SNAREs".
Probab=99.28 E-value=1.8e-11 Score=88.03 Aligned_cols=62 Identities=27% Similarity=0.558 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhHHHHHHHHHHHHHHHHHH
Q 047939 222 AIIEERELGIQEIQQQIGEVNEVFKDLAVLVHEQGTIIDDIGSHIENSQVATAQGKSQLVKA 283 (314)
Q Consensus 222 ~~i~eR~~eI~~Ie~~I~eLneiF~dLa~lV~eQGe~ID~Ie~Nve~a~~~v~~a~~~L~~A 283 (314)
.++++|+++|..|+..+.++++||.+|+.+|.+||++||+|++|++.+..+++.|..+|.+|
T Consensus 5 ~~~~~~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~d~~~~~~~~~~~~l~~~ 66 (66)
T smart00397 5 QMEEERDEELEQLEKSIGELKQIFLDMGTELEEQGEQLDRIEDNVDDADVNLKKANKRLKKA 66 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC
Confidence 45899999999999999999999999999999999999999999999999999999999775
No 13
>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.16 E-value=5.2e-08 Score=87.24 Aligned_cols=223 Identities=13% Similarity=0.206 Sum_probs=133.5
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC----CCchh
Q 047939 60 VNGKQDSTQAVASGIFQINTAVSTFQRLVNTLGTPKDTPELREKIHKTRLHIGQLVKDTSAKLKQASETDH----HAQVS 135 (314)
Q Consensus 60 ~~~f~~~~~~i~~~I~~I~~~v~~L~~~~~~L~t~~D~~~lr~~I~~l~~~i~~l~~~~~~~lk~l~~~~~----~~~~~ 135 (314)
.+||.....++......++....+...+.+. ++.+.+..-..|. ..+..+...+...+--+.+.+. ...+.
T Consensus 5 ~Dp~~~v~~e~~k~~~~~~~~~~r~~~~~~~--~~~~~~~~t~~lr---~~i~~~~edl~~~~~il~~~~~~~~ide~El 79 (235)
T KOG3202|consen 5 EDPFFRVKNETLKLSEEIQGLYQRRSELLKD--TGSDAEELTSVLR---RSIEEDLEDLDELISILERNPSKFGIDEFEL 79 (235)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHhh--ccchhHHHHHHHH---HHhHHHHHHHHHHHHHHHhCcccccCcHHHH
Confidence 4678888889988888888887777776666 2333333333333 2233333333333333333221 12345
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhcCCCCCCCCCCCcccccccccCccchHHHHHHHHHHHHHHHHHHh
Q 047939 136 ADKKIADAKLAKDFQAVLKEFQKAQRLAAER-ETAYTPFVPQAVLPSSYTAHELDISSDRSAEQHALLVESRRQEVVLLD 214 (314)
Q Consensus 136 r~~k~~~~kL~~~f~~~l~~Fq~~Q~~~~~r-~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~eqq~l~~~~~~q~~~~~~ 214 (314)
+.|+.....+..++..+-..|.. ..+... .+... ..+.. .+.....- ... .+... ..
T Consensus 80 ~~R~~~i~~lr~q~~~~~~~~~~--~~~~~~~~r~~l-~~~~~-~~~~~~~~-~~~-~~~D~----------------v~ 137 (235)
T KOG3202|consen 80 SRRRRFIDNLRTQLRQMKSKMAM--SGFANSNIRDIL-LGPEK-SPNLDEAM-SRA-SGLDN----------------VQ 137 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh--hccccccchhhh-cCCCC-CCchhhhH-HHh-hccCc----------------HH
Confidence 67788888888888777777766 111111 00000 00000 00000000 000 00000 00
Q ss_pred hHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhcchhhH
Q 047939 215 NEIAFNEAIIEERELGIQEIQQQIGEVNEVFKDLAVLVHEQGTIIDDIGSHIENSQVATAQGKSQLVKAAKTQRSNSSLT 294 (314)
Q Consensus 215 ~E~~~~e~~i~eR~~eI~~Ie~~I~eLneiF~dLa~lV~eQGe~ID~Ie~Nve~a~~~v~~a~~~L~~A~~~qk~~rk~~ 294 (314)
....++..++++.+..+..|+.+|+-++.|=..++.-+.+||.+||+.++-++.+...+..+.+.|.+..+.+ +.+..|
T Consensus 138 ~~~~~qqqm~~eQDe~Ld~ls~ti~rlk~~a~~~g~EL~~Q~~llDdl~~e~d~t~srl~~~~~~l~~v~~~~-s~~~~~ 216 (235)
T KOG3202|consen 138 EIVQLQQQMLQEQDEGLDGLSATVQRLKGMALAMGEELEEQGRLLDDLDNEMDRTESRLDRVMKRLAKVNRMA-SQCSQW 216 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccccch
Confidence 1123445678999999999999999999999999999999999999999999999999999999999999833 333334
Q ss_pred HHHHHHHHHHHHHHHH
Q 047939 295 CLLLVIFGIVLLILVV 310 (314)
Q Consensus 295 ~~l~ii~~Ivl~Ivl~ 310 (314)
|+++++++++++++++
T Consensus 217 ~~il~l~~~~~lvv~i 232 (235)
T KOG3202|consen 217 CAILLLVGLLLLVVII 232 (235)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 4344444443333333
No 14
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=98.92 E-value=1.2e-08 Score=79.65 Aligned_cols=93 Identities=24% Similarity=0.329 Sum_probs=80.8
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-------CCC
Q 047939 61 NGKQDSTQAVASGIFQINTAVSTFQRLVNT-LGTPKDTPELREKIHKTRLHIGQLVKDTSAKLKQASETD-------HHA 132 (314)
Q Consensus 61 ~~f~~~~~~i~~~I~~I~~~v~~L~~~~~~-L~t~~D~~~lr~~I~~l~~~i~~l~~~~~~~lk~l~~~~-------~~~ 132 (314)
++|.+.+++|...|..|..++.+|.++++. |..+.++..++.+|+.++.+|+.++..|+..|+.+.... .++
T Consensus 3 ~~f~~~v~~i~~~i~~i~~~~~~l~~l~~~~l~~~~~d~~~~~el~~l~~~i~~~~~~~~~~lk~l~~~~~~~~~~~~~~ 82 (103)
T PF00804_consen 3 PEFFDEVQEIREDIDKIKEKLNELRKLHKKILSSPDQDSELKRELDELTDEIKQLFQKIKKRLKQLSKDNEDSEGEEPSS 82 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT--S
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCc
Confidence 569999999999999999999999999995 444443457999999999999999999999999999872 235
Q ss_pred chhhhHHHHHHHHHHHHHHHH
Q 047939 133 QVSADKKIADAKLAKDFQAVL 153 (314)
Q Consensus 133 ~~~r~~k~~~~kL~~~f~~~l 153 (314)
.+.|++++++..|+++|+++|
T Consensus 83 ~~~ri~~nq~~~L~~kf~~~m 103 (103)
T PF00804_consen 83 NEVRIRKNQVQALSKKFQEVM 103 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHC
Confidence 567899999999999999886
No 15
>KOG3894 consensus SNARE protein Syntaxin 18/UFE1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.58 E-value=0.00012 Score=67.60 Aligned_cols=82 Identities=16% Similarity=0.223 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHH
Q 047939 224 IEERELGIQEIQQQIGEVNEVFKDLAVLVHEQGTIIDDIGSHIENSQVATAQGKSQLVKAAKTQRSNSSLTCLLLVIFGI 303 (314)
Q Consensus 224 i~eR~~eI~~Ie~~I~eLneiF~dLa~lV~eQGe~ID~Ie~Nve~a~~~v~~a~~~L~~A~~~qk~~rk~~~~l~ii~~I 303 (314)
..+--+++++||+.|.|+..|-.-++.-|-+|...||.|-+++..+..|++.||++|.+|.+.....|+|..++++|+..
T Consensus 227 ~n~~~devrqie~~lvEI~~Lq~ifsehvl~Q~~~Id~I~d~~~~~teNIk~gNe~irka~~~~~~~r~~~lf~llvlsf 306 (316)
T KOG3894|consen 227 LNELLDEVRQIEKRLVEISALQDIFSEHVLQQDQNIDLIHDLQSGATENIKDGNEEIRKAKRNNGGLRVFLLFFLLVLSF 306 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHHhcccchhHHHHHHHHHHH
Confidence 45667899999999999999999999999999999999999999999999999999999998888888776655555544
Q ss_pred HH
Q 047939 304 VL 305 (314)
Q Consensus 304 vl 305 (314)
++
T Consensus 307 ~l 308 (316)
T KOG3894|consen 307 SL 308 (316)
T ss_pred HH
Confidence 43
No 16
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=97.70 E-value=0.001 Score=50.81 Aligned_cols=55 Identities=20% Similarity=0.273 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhHHHHHHHHHHHHHHHHHH
Q 047939 229 LGIQEIQQQIGEVNEVFKDLAVLVHEQGTIIDDIGSHIENSQVATAQGKSQLVKA 283 (314)
Q Consensus 229 ~eI~~Ie~~I~eLneiF~dLa~lV~eQGe~ID~Ie~Nve~a~~~v~~a~~~L~~A 283 (314)
+.+.++...+.|+.+++.+=-..+.+-|+.|+.++...+.....+..-.+.=.+.
T Consensus 3 dkl~~i~~~v~~v~~im~~Ni~~ll~Rge~L~~L~~kt~~L~~~a~~F~k~a~~l 57 (89)
T PF00957_consen 3 DKLEQIQEQVEEVKNIMRENIDKLLERGEKLEELEDKTEELSDNAKQFKKNAKKL 57 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 4578899999999999999889999999999999998887777766655444333
No 17
>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.64 E-value=0.00041 Score=54.88 Aligned_cols=83 Identities=20% Similarity=0.302 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHH
Q 047939 225 EERELGIQEIQQQIGEVNEVFKDLAVLVHEQGTIIDDIGSHIENSQVATAQGKSQLVKAAKTQRSNSSLTCLLLVIFGIV 304 (314)
Q Consensus 225 ~eR~~eI~~Ie~~I~eLneiF~dLa~lV~eQGe~ID~Ie~Nve~a~~~v~~a~~~L~~A~~~qk~~rk~~~~l~ii~~Iv 304 (314)
.|=++.+..+.+-|.-|..+--|++.-|..|.-++|.+++..+++......+...++.-.+. +.++.+|++++.++|+
T Consensus 32 ~ENee~~e~L~~kV~aLKsLs~dIg~Ev~~qnklld~mdddfdsts~~L~gtm~r~~~~ar~--sg~~l~~~m~~f~lV~ 109 (118)
T KOG3385|consen 32 RENEEAAESLQQKVKALKSLSLDIGDEVRTQNKLLDGMDDDFDSTSGFLSGTMGRLKTMARR--SGISLLCWMAVFSLVA 109 (118)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccchhhhHHHHHHHHHHHHHHHhc--CCcchHHHHHHHHHHH
Confidence 45556788899999999999999999999999999999999999999999999999887766 6677777776666655
Q ss_pred HHHHH
Q 047939 305 LLILV 309 (314)
Q Consensus 305 l~Ivl 309 (314)
++|+.
T Consensus 110 ~fi~~ 114 (118)
T KOG3385|consen 110 FFILW 114 (118)
T ss_pred HHHhh
Confidence 54443
No 18
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.29 E-value=0.0074 Score=48.07 Aligned_cols=43 Identities=23% Similarity=0.417 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhHHHHHHH
Q 047939 230 GIQEIQQQIGEVNEVFKDLAVLVHEQGTIIDDIGSHIENSQVA 272 (314)
Q Consensus 230 eI~~Ie~~I~eLneiF~dLa~lV~eQGe~ID~Ie~Nve~a~~~ 272 (314)
.+++.+..+.|+-+|+++==.=|-|-|+-||.+++=.++....
T Consensus 30 k~~~tq~QvdeVv~IMr~NV~KVlER~ekL~~L~drad~L~~~ 72 (116)
T KOG0860|consen 30 KLQQTQAQVDEVVDIMRENVEKVLERGEKLDELDDRADQLQAG 72 (116)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHhcchHHHHHHHHHHHHHH
Confidence 4667778888999999998888999999999998755554433
No 19
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.99 E-value=0.053 Score=50.66 Aligned_cols=239 Identities=10% Similarity=0.204 Sum_probs=138.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-cCCCchhhh-H
Q 047939 65 DSTQAVASGIFQINTAVSTFQRLVNTLGTPK----DTPELREKIHKTRLHIGQLVKDTSAKLKQASET-DHHAQVSAD-K 138 (314)
Q Consensus 65 ~~~~~i~~~I~~I~~~v~~L~~~~~~L~t~~----D~~~lr~~I~~l~~~i~~l~~~~~~~lk~l~~~-~~~~~~~r~-~ 138 (314)
.-.++....+..|+..+..|...++.|.... .++.-..++....+.....++.....|+..-+. .......+. .
T Consensus 33 ~~l~~Ff~~ve~Ir~~i~~l~~~~~~l~~~hs~~l~~~~~~~~~k~~l~~~~~~~~~~a~~Ik~kL~~~e~~~~~~~~~~ 112 (297)
T KOG0810|consen 33 SNLEEFFEDVEEIRDDIEKLDEDVEKLQKLHSKSLHSPNADKELKRKLESLVDEIRRRARKIKTKLKALEKENEADETQN 112 (297)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccC
Confidence 6678888999999999999999888664322 223333344444444444444444444432221 111100110 0
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-----CCCCCCCCCcccccccccCccchHHHHHHHHHHHHHHHH
Q 047939 139 --KIADAKLAKDFQAVLKEFQKAQRLAAERETAYTP-----FVPQAVLPSSYTAHELDISSDRSAEQHALLVESRRQEVV 211 (314)
Q Consensus 139 --k~~~~kL~~~f~~~l~~Fq~~Q~~~~~r~k~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~eqq~l~~~~~~q~~~ 211 (314)
......=+.++..+..+|.++-..|..-...|.. +.++- ...+.... .+...+ .++.+...+...
T Consensus 113 ~~~~~~r~rrtq~~~~~kkf~~~M~~f~~~~~~~r~~~k~~i~Rql-----~i~~~~~~-~de~ie--~~ie~g~~~~f~ 184 (297)
T KOG0810|consen 113 RSSAGLRTRRTQTSALSKKLKELMNEFNRTQSKYREEYKERIQRQL-----FIVGGEET-TDEEIE--EMIESGGSEVFT 184 (297)
T ss_pred CCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhhCCCcC-ChHHHH--HHHHCCChHHHH
Confidence 0001112466777778888888888764433322 11110 00010001 111111 233221111111
Q ss_pred HHhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhcc-
Q 047939 212 LLDNEIAFNEAIIEERELGIQEIQQQIGEVNEVFKDLAVLVHEQGTIIDDIGSHIENSQVATAQGKSQLVKAAKTQRSN- 290 (314)
Q Consensus 212 ~~~~E~~~~e~~i~eR~~eI~~Ie~~I~eLneiF~dLa~lV~eQGe~ID~Ie~Nve~a~~~v~~a~~~L~~A~~~qk~~- 290 (314)
..-+. ......+=..||+.=+..|.+|-.-..||+.|..+=..+|+.=...|+....||+.|.....+|...-+++
T Consensus 185 --~~~i~-~~~~~~~~l~Eiq~Rh~~ik~LEksi~ELhqlFlDMa~LVe~QgEmvd~IE~nV~~A~~~V~~g~~~~~kAv 261 (297)
T KOG0810|consen 185 --QKAIQ-DRGQAKQTLAEIQERHDEIKKLEKSIRELHQLFLDMAVLVESQGEMVDRIENNVENAVDYVEQGVDHLKKAV 261 (297)
T ss_pred --HHHHH-HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000 01123444567888888999999999999999999999999999999999999999999999998886644
Q ss_pred ---hhhHHHHHHHHHHHHHHHHHHHhC
Q 047939 291 ---SSLTCLLLVIFGIVLLILVVVLAA 314 (314)
Q Consensus 291 ---rk~~~~l~ii~~Ivl~Ivl~vv~~ 314 (314)
+|-.+|.++|+++++++++++++|
T Consensus 262 ~~qkkaRK~k~i~ii~~iii~~v~v~~ 288 (297)
T KOG0810|consen 262 KYQKKARKWKIIIIIILIIIIVVLVVV 288 (297)
T ss_pred HHHHHhhhceeeeehHHHHHHHHHhhh
Confidence 333678888888888888888765
No 20
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=96.92 E-value=0.27 Score=43.92 Aligned_cols=78 Identities=15% Similarity=0.208 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHH
Q 047939 228 ELGIQEIQQQIGEVNEVFKDLAVLVHEQGTIIDDIGSHIENSQVATAQGKSQLVKAAKTQRSNSSLTCLLLVIFGIVLLI 307 (314)
Q Consensus 228 ~~eI~~Ie~~I~eLneiF~dLa~lV~eQGe~ID~Ie~Nve~a~~~v~~a~~~L~~A~~~qk~~rk~~~~l~ii~~Ivl~I 307 (314)
++-+.+|-+=..++.++-.+=..+|.-=...+.+.+.|++....++.+|.+-..+|+ .|+.|-+.+|+++|++||+++
T Consensus 191 Ekt~ael~qLfndm~~~V~eq~e~Vd~I~~~~~~~~~n~~~g~~h~d~AvksaRaaR--kkki~c~gI~~iii~viv~vv 268 (280)
T COG5074 191 EKTMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQENVEQGVGHTDKAVKSARAAR--KKKIRCYGICFIIIIVIVVVV 268 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcchHHHHHhhHhhHHhhHHHhhhhHHHHHHHHHHHH--hcceehhhhHHHHHHHHHHHH
Confidence 344555555555556666666677776667777788888888888888877643332 334455555555555555555
No 21
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.62 E-value=0.57 Score=43.19 Aligned_cols=86 Identities=16% Similarity=0.169 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhcchhh-HHHHHH
Q 047939 221 EAIIEERELGIQEIQQQIGEVNEVFKDLAVLVHEQGTIIDDIGSHIENSQVATAQGKSQLVKAAKTQRSNSSL-TCLLLV 299 (314)
Q Consensus 221 e~~i~eR~~eI~~Ie~~I~eLneiF~dLa~lV~eQGe~ID~Ie~Nve~a~~~v~~a~~~L~~A~~~qk~~rk~-~~~l~i 299 (314)
+..|++=+.+|..+..-..||..|-++=|.+|..=.+.|++-..||+.+..+..+|...=.++++. . .. .|++++
T Consensus 179 ~q~I~~lE~dI~dvN~IFkdL~~lV~eQG~~VDsIe~nve~a~~nveqg~~~L~kA~~yq~~~~k~---~-~~ll~v~~~ 254 (269)
T KOG0811|consen 179 EQAIEQLEADIIDVNEIFKDLGSLVHEQGELVDSIEANVENASVNVEQGTENLRKAAKYQRKARKK---K-CILLLVGGP 254 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc---h-hhhhHHHHH
Confidence 355888999999999999999999999999999999999999999999999999999876665322 2 55 455555
Q ss_pred HHHHHHHHHHH
Q 047939 300 IFGIVLLILVV 310 (314)
Q Consensus 300 i~~Ivl~Ivl~ 310 (314)
+++|+.++++.
T Consensus 255 v~lii~l~i~~ 265 (269)
T KOG0811|consen 255 VGLIIGLIIAG 265 (269)
T ss_pred HHHHHHHHHHH
Confidence 55555555544
No 22
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=96.21 E-value=0.12 Score=47.26 Aligned_cols=51 Identities=10% Similarity=0.231 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhHHHHHHHHHHHHHHHHHH
Q 047939 230 GIQEIQQQIGEVNEVFKDLAVLVHEQGTIIDDIGSHIENSQVATAQGKSQLVKA 283 (314)
Q Consensus 230 eI~~Ie~~I~eLneiF~dLa~lV~eQGe~ID~Ie~Nve~a~~~v~~a~~~L~~A 283 (314)
++-.+-+++ .+--.-++..+.+-...||..+..++.....+..+...|..-
T Consensus 171 em~~La~~L---K~~s~~~~~~l~~D~~~L~~~~~~~d~n~~~l~~~~~rl~~~ 221 (251)
T PF09753_consen 171 EMLSLARQL---KENSLAFSQILKEDNKVLDRTEEGLDRNLSSLKRESKRLKEH 221 (251)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444 344445678899999999999999999999999998888664
No 23
>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.44 E-value=0.42 Score=44.13 Aligned_cols=92 Identities=16% Similarity=0.292 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhHHHHHHHHHHHHHHHHHHHHH-hh--cc-hhhHHHH
Q 047939 222 AIIEERELGIQEIQQQIGEVNEVFKDLAVLVHEQGTIIDDIGSHIENSQVATAQGKSQLVKAAKT-QR--SN-SSLTCLL 297 (314)
Q Consensus 222 ~~i~eR~~eI~~Ie~~I~eLneiF~dLa~lV~eQGe~ID~Ie~Nve~a~~~v~~a~~~L~~A~~~-qk--~~-rk~~~~l 297 (314)
..++.=++..++=|+.|..|.+=..||+++..+=|.||-.=-.=|+...-|+++....++.|.+- +| ++ |+-+-|.
T Consensus 204 ~~~e~~~~~~~erE~EV~ql~~sI~dL~~if~DL~~lVvdQGtvvDRIDyNvEqt~~~v~~a~keL~KAe~yQk~~~k~~ 283 (305)
T KOG0809|consen 204 MLFENNEEVVREREKEVTQLVESIYDLNQIFKDLSALVVDQGTVVDRIDYNVEQTQVRVEDALKELHKAERYQKRNKKMK 283 (305)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheecchhhhhhhHHhHHHHHHHHHHHHhcCCceE
Confidence 44555566777777888888888888888888888888777777788888888888888887764 22 22 2335577
Q ss_pred HHHHHHHHHHHHHHHh
Q 047939 298 LVIFGIVLLILVVVLA 313 (314)
Q Consensus 298 ~ii~~Ivl~Ivl~vv~ 313 (314)
+++++++++|++++++
T Consensus 284 ~i~~L~l~ii~llvll 299 (305)
T KOG0809|consen 284 VILMLTLLIIALLVLL 299 (305)
T ss_pred ehHHHHHHHHHHHHHH
Confidence 7777777777777765
No 24
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=94.92 E-value=0.61 Score=35.33 Aligned_cols=18 Identities=22% Similarity=0.420 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 047939 224 IEERELGIQEIQQQIGEV 241 (314)
Q Consensus 224 i~eR~~eI~~Ie~~I~eL 241 (314)
+-+|.+.+..|+..-.+|
T Consensus 26 ll~Rge~L~~L~~kt~~L 43 (89)
T PF00957_consen 26 LLERGEKLEELEDKTEEL 43 (89)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHcCchHHHHHHHHHHH
Confidence 445555555555443333
No 25
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=94.18 E-value=4.5 Score=37.18 Aligned_cols=79 Identities=13% Similarity=0.228 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHH
Q 047939 223 IIEERELGIQEIQQQIGEVNEVFKDLAVLVHEQGTIIDDIGSHIENSQVATAQGKSQLVKAAKTQRSNSSLTCLLLVIFG 302 (314)
Q Consensus 223 ~i~eR~~eI~~Ie~~I~eLneiF~dLa~lV~eQGe~ID~Ie~Nve~a~~~v~~a~~~L~~A~~~qk~~rk~~~~l~ii~~ 302 (314)
.|..=++.|.++..-..||..+-.+=|.+|.-=...|+++-.|...|.....+|...=+++ ++.|...++++++++
T Consensus 196 eI~~l~~gI~Eln~IF~dL~~lV~eQG~lVdrID~Ni~~t~~n~k~A~kEL~kA~~hqrrt----~k~~~~~Llil~vv~ 271 (283)
T COG5325 196 EIKNLARGIYELNEIFRDLGSLVGEQGELVDRIDFNIENTSDNLKNANKELEKAPAHQRRT----KKCRFYLLLILLVVL 271 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhhhhhhHHHHhhHHHHHHhHHHHhhh----ccchhhHHHHHHHHH
Confidence 4777788999999999999999999999999999999999999999999999998765444 455777665544444
Q ss_pred HHH
Q 047939 303 IVL 305 (314)
Q Consensus 303 Ivl 305 (314)
.++
T Consensus 272 lfv 274 (283)
T COG5325 272 LFV 274 (283)
T ss_pred HHH
Confidence 433
No 26
>KOG3208 consensus SNARE protein GS28 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.97 E-value=4.3 Score=36.12 Aligned_cols=64 Identities=11% Similarity=0.070 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047939 103 KIHKTRLHIGQLVKDTSAKLKQASETDHHAQVSADKKIADAKLAKDFQAVLKEFQKAQRLAAER 166 (314)
Q Consensus 103 ~I~~l~~~i~~l~~~~~~~lk~l~~~~~~~~~~r~~k~~~~kL~~~f~~~l~~Fq~~Q~~~~~r 166 (314)
..+.+..++..+..+.++-...+.........+....-...+-+.-+++..++|.++...+..+
T Consensus 52 s~ks~~~eie~LLeql~~vndsm~~~~~s~a~~aa~~htL~RHrEILqdy~qef~rir~n~~a~ 115 (231)
T KOG3208|consen 52 SFKSLENEIEGLLEQLQDVNDSMNDCASSPANSAAVMHTLQRHREILQDYTQEFRRIRSNIDAK 115 (231)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666777777888777777777776211112222333334445566677777888887776653
No 27
>KOG3065 consensus SNAP-25 (synaptosome-associated protein) component of SNARE complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.11 E-value=0.38 Score=44.44 Aligned_cols=57 Identities=12% Similarity=0.287 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhHHHHHHHHHHHHHHHHH
Q 047939 226 ERELGIQEIQQQIGEVNEVFKDLAVLVHEQGTIIDDIGSHIENSQVATAQGKSQLVK 282 (314)
Q Consensus 226 eR~~eI~~Ie~~I~eLneiF~dLa~lV~eQGe~ID~Ie~Nve~a~~~v~~a~~~L~~ 282 (314)
+=+..+.+|-..+..|..|-.||+.-|..|.+.||+|+++++.....|..+++.+++
T Consensus 215 eiD~NL~qis~~lg~LK~mA~dmg~Eie~Qn~~Ld~I~~k~d~~d~~v~~~n~R~~k 271 (273)
T KOG3065|consen 215 EIDENLDQLSAILGRLKNMALDMGSEIESQNERLDRIEDKVDRLDLRVDKANKRAKK 271 (273)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHhhhhHHHHHHHHHHh
Confidence 455678899999999999999999999999999999999999999999999887754
No 28
>KOG3251 consensus Golgi SNAP receptor complex member [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.58 E-value=14 Score=32.72 Aligned_cols=27 Identities=15% Similarity=0.222 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047939 141 ADAKLAKDFQAVLKEFQKAQRLAAERE 167 (314)
Q Consensus 141 ~~~kL~~~f~~~l~~Fq~~Q~~~~~r~ 167 (314)
.++.|..+|..+-...+...++...|+
T Consensus 70 r~dQl~~d~~~l~~~l~~~~~R~~~r~ 96 (213)
T KOG3251|consen 70 RVDQLLEDVEHLQTSLRTSMNRNNRRE 96 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 355666666655555555554444443
No 29
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=89.38 E-value=0.77 Score=32.32 Aligned_cols=27 Identities=15% Similarity=0.279 Sum_probs=13.4
Q ss_pred HhhcchhhHHHHHHHHHHHHHHHHHHH
Q 047939 286 TQRSNSSLTCLLLVIFGIVLLILVVVL 312 (314)
Q Consensus 286 ~qk~~rk~~~~l~ii~~Ivl~Ivl~vv 312 (314)
.||+.+|..++++++++++++|+++..
T Consensus 31 ~qk~~~~~~~i~~~~~i~~l~v~~~~~ 57 (59)
T PF09889_consen 31 RQKRMRKTQYIFFGIFILFLAVWIFMT 57 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555555454444443
No 30
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.99 E-value=19 Score=32.02 Aligned_cols=56 Identities=9% Similarity=0.184 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 047939 231 IQEIQQQIGEVNEVFKDLAVLVHEQGTIIDDIGSHIENSQVATAQGKSQLVKAAKT 286 (314)
Q Consensus 231 I~~Ie~~I~eLneiF~dLa~lV~eQGe~ID~Ie~Nve~a~~~v~~a~~~L~~A~~~ 286 (314)
|+.=.+-..|--+|=.++-.=.+.|-+.|.+--.-.-.+.+|+.++.+-|..-.+.
T Consensus 137 l~ds~Ria~ETEqIG~~IL~dL~~QRe~L~rar~rL~~td~~lgkS~kiL~tM~RR 192 (220)
T KOG1666|consen 137 LKDSQRIALETEQIGSEILEDLHGQREQLERARERLRETDANLGKSRKILTTMTRR 192 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHH
Confidence 44444445555555555555667899998888888888888888887777666443
No 31
>PF11166 DUF2951: Protein of unknown function (DUF2951); InterPro: IPR021337 This family of proteins has no known function. It has a highly conserved sequence.
Probab=87.77 E-value=11 Score=29.02 Aligned_cols=80 Identities=8% Similarity=0.116 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhcch-hhHHHHHHHHHHHHHH
Q 047939 229 LGIQEIQQQIGEVNEVFKDLAVLVHEQGTIIDDIGSHIENSQVATAQGKSQLVKAAKTQRSNS-SLTCLLLVIFGIVLLI 307 (314)
Q Consensus 229 ~eI~~Ie~~I~eLneiF~dLa~lV~eQGe~ID~Ie~Nve~a~~~v~~a~~~L~~A~~~qk~~r-k~~~~l~ii~~Ivl~I 307 (314)
..|+.||.+-..+..=+.++-.=++.|....+..+.+++..... ..-.++.++. ..|.-| -|+|++.++..|+..+
T Consensus 11 ~Ri~rLEendk~i~~~L~~Ik~gq~~qe~v~~kld~tlD~i~re-Re~dee~k~~--n~Knir~~KmwilGlvgTi~gsl 87 (98)
T PF11166_consen 11 WRIRRLEENDKTIFNKLDEIKDGQHDQELVNQKLDRTLDEINRE-REEDEENKKK--NDKNIRDIKMWILGLVGTIFGSL 87 (98)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhHhhHHHHHHHHHhhHHHHHHH-HHHHHHHHHH--HHhhHHHHHHHHHHHHHHHHHHH
Confidence 34666666555555555555555667777777777777774433 2223333332 223334 4577888887777655
Q ss_pred HHHH
Q 047939 308 LVVV 311 (314)
Q Consensus 308 vl~v 311 (314)
|+++
T Consensus 88 iia~ 91 (98)
T PF11166_consen 88 IIAL 91 (98)
T ss_pred HHHH
Confidence 5544
No 32
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.64 E-value=3.8 Score=32.83 Aligned_cols=19 Identities=16% Similarity=0.366 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 047939 224 IEERELGIQEIQQQIGEVN 242 (314)
Q Consensus 224 i~eR~~eI~~Ie~~I~eLn 242 (314)
+-||.+.+.+|+.--..|+
T Consensus 52 VlER~ekL~~L~drad~L~ 70 (116)
T KOG0860|consen 52 VLERGEKLDELDDRADQLQ 70 (116)
T ss_pred HHHhcchHHHHHHHHHHHH
Confidence 6677777776665544443
No 33
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=83.56 E-value=7 Score=30.09 Aligned_cols=60 Identities=13% Similarity=0.142 Sum_probs=36.5
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 047939 61 NGKQDSTQAVASGIFQINTAVSTFQRLVNTLGTPKDTPELREKIHKTRLHIGQLVKDTSAKLKQASE 127 (314)
Q Consensus 61 ~~f~~~~~~i~~~I~~I~~~v~~L~~~~~~L~t~~D~~~lr~~I~~l~~~i~~l~~~~~~~lk~l~~ 127 (314)
+||+...++|...|..++.......+....-. ....+..+..++...+..+...|..|..
T Consensus 1 DPF~~v~~ev~~sl~~l~~~~~~~~~~~~~~~-------~~~e~~~~~~eL~~~l~~ie~~L~DL~~ 60 (97)
T PF09177_consen 1 DPFFVVKDEVQSSLDRLESLYRRWQRLRSDTS-------SSEELKWLKRELRNALQSIEWDLEDLEE 60 (97)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHTTHCC--------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHhcccCC-------CcHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47889999999999998886665555444332 2234444555555555555555555544
No 34
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=83.20 E-value=27 Score=31.75 Aligned_cols=57 Identities=7% Similarity=0.128 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcchhHHH----HHhhHHHHHHHHHHHHHHHHHHHHHhhcchh
Q 047939 233 EIQQQIGEVNEVFKDLAVLVHEQGTIIDD----IGSHIENSQVATAQGKSQLVKAAKTQRSNSS 292 (314)
Q Consensus 233 ~Ie~~I~eLneiF~dLa~lV~eQGe~ID~----Ie~Nve~a~~~v~~a~~~L~~A~~~qk~~rk 292 (314)
+|-.+|..|..-.++=+... +..|.. ++.-.+.+..|...-..+=.+..+|.+++.+
T Consensus 167 ~L~~em~~La~~LK~~s~~~---~~~l~~D~~~L~~~~~~~d~n~~~l~~~~~rl~~~~~~~~~ 227 (251)
T PF09753_consen 167 DLTEEMLSLARQLKENSLAF---SQILKEDNKVLDRTEEGLDRNLSSLKRESKRLKEHSSKSWG 227 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 56666666666666554443 222222 2333333334444444444445555555444
No 35
>KOG0812 consensus SNARE protein SED5/Syntaxin 5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.38 E-value=27 Score=32.43 Aligned_cols=73 Identities=14% Similarity=0.155 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHH
Q 047939 229 LGIQEIQQQIGEVNEVFKDLAVLVHEQGTIIDDIGSHIENSQVATAQGKSQLVKAAKTQRSNSSLTCLLLVIFGIVL 305 (314)
Q Consensus 229 ~eI~~Ie~~I~eLneiF~dLa~lV~eQGe~ID~Ie~Nve~a~~~v~~a~~~L~~A~~~qk~~rk~~~~l~ii~~Ivl 305 (314)
--|.+|=.-..+|..|-.+=+.++.-=++.+|.++-||+.|.+.+-+--..+. ..|.---|.+.+++++.+|.
T Consensus 234 stIsElG~IF~QLA~mVseQ~E~i~RID~nv~ds~lnI~gA~~ellKy~e~vS----SNRwLmvkiF~i~ivFflvf 306 (311)
T KOG0812|consen 234 STISELGGIFQQLASMVSEQEETIQRIDDNVDDSDLNIEGAHSELLKYFERVS----SNRWLMVKIFGILIVFFLVF 306 (311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHhc----cchHHHHHHHHHHHHHHHHH
Confidence 34666666677888888888888888888888999999988888766544443 23333334544444443333
No 36
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=81.13 E-value=22 Score=27.03 Aligned_cols=37 Identities=8% Similarity=0.202 Sum_probs=19.0
Q ss_pred hhcchhHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhc
Q 047939 253 HEQGTIIDDIGSHIENSQVATAQGKSQLVKAAKTQRS 289 (314)
Q Consensus 253 ~eQGe~ID~Ie~Nve~a~~~v~~a~~~L~~A~~~qk~ 289 (314)
.+|-..+....+-.......+..+.+=+.+..+..+.
T Consensus 32 ~~Ss~~L~~~~~e~~~~~~~l~~s~~ll~~l~r~~~~ 68 (92)
T PF03908_consen 32 EESSATLRSTNDEYDGQSSLLKKSRKLLKKLERRDKT 68 (92)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444555666666666555444433
No 37
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=79.67 E-value=2.9 Score=29.30 Aligned_cols=15 Identities=13% Similarity=0.211 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHh
Q 047939 273 TAQGKSQLVKAAKTQ 287 (314)
Q Consensus 273 v~~a~~~L~~A~~~q 287 (314)
-|-|..-|..--++|
T Consensus 8 nETA~~FL~RvGr~q 22 (60)
T PF06072_consen 8 NETATEFLRRVGRQQ 22 (60)
T ss_pred cccHHHHHHHHhHHH
Confidence 345666777776666
No 38
>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C.
Probab=78.60 E-value=20 Score=25.17 Aligned_cols=56 Identities=11% Similarity=0.161 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 047939 230 GIQEIQQQIGEVNEVFKDLAVLVHEQGTIIDDIGSHIENSQVATAQGKSQLVKAAK 285 (314)
Q Consensus 230 eI~~Ie~~I~eLneiF~dLa~lV~eQGe~ID~Ie~Nve~a~~~v~~a~~~L~~A~~ 285 (314)
-|..-.+.+.|..++=.+...-...|++.|.++...+..+..++..++.-|..-.+
T Consensus 9 ~L~~s~~~~~e~~~~g~~~l~~L~~Qre~L~~~~~kl~~i~~~l~~s~~~l~~I~r 64 (66)
T PF12352_consen 9 SLQRSHRMADETEEIGAATLEDLRSQREQLKRVRDKLDDIDSNLPKSNSLLKRISR 64 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHc
Confidence 45566667777777888888888999999999999999999999999988876643
No 39
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent
Probab=77.32 E-value=19 Score=24.18 Aligned_cols=56 Identities=13% Similarity=0.289 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhHHHHHHHHHHHHHHHHHHHHHhh
Q 047939 233 EIQQQIGEVNEVFKDLAVLVHEQGTIIDDIGSHIENSQVATAQGKSQLVKAAKTQR 288 (314)
Q Consensus 233 ~Ie~~I~eLneiF~dLa~lV~eQGe~ID~Ie~Nve~a~~~v~~a~~~L~~A~~~qk 288 (314)
+-++.+..|.....+|..|..+=|.+|..=..-++....++..+...+..|.+.-+
T Consensus 3 e~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~~~~~~~~~~~~~~l~ 58 (60)
T cd00193 3 ERDEELEQLEASIGELKQIFLDLGTEVEEQGELLDRIEDNVDNADVNVKRANKRLK 58 (60)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45677888888888888888888888888888888888888888888888866543
No 40
>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.45 E-value=13 Score=32.61 Aligned_cols=35 Identities=20% Similarity=0.288 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHh
Q 047939 230 GIQEIQQQIGEVNEVFKDLAVLVHEQGTIIDDIGS 264 (314)
Q Consensus 230 eI~~Ie~~I~eLneiF~dLa~lV~eQGe~ID~Ie~ 264 (314)
-+.++.-.|.||..++.+==.-|-+-||-|+-.-+
T Consensus 126 ~lskvkaqv~evk~vM~eNIekvldRGekiELLVd 160 (217)
T KOG0859|consen 126 KLAKVKAQVTEVKGVMMENIEKVLDRGEKIELLVD 160 (217)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCeEEeeec
Confidence 46677778888888887777778888876554433
No 41
>PF09548 Spore_III_AB: Stage III sporulation protein AB (spore_III_AB); InterPro: IPR014198 This entry represents the stage III sporulation protein AB, which is encoded in a spore formation operon: spoIIIAABCDEFGH that is under sigma G regulation []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=71.76 E-value=13 Score=31.75 Aligned_cols=40 Identities=28% Similarity=0.301 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHH
Q 047939 270 QVATAQGKSQLVKAAKTQRSNSSLTCLLLVIFGIVLLILV 309 (314)
Q Consensus 270 ~~~v~~a~~~L~~A~~~qk~~rk~~~~l~ii~~Ivl~Ivl 309 (314)
.-..++-..++..|.+-.+++.|..-++.+++.+.++|++
T Consensus 130 ~l~~~~L~~~~~~a~~~~~~~~Klyr~LGvl~G~~lvIlL 169 (170)
T PF09548_consen 130 ELYLEQLEQQLEEAREEAKKKGKLYRSLGVLGGLFLVILL 169 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHh
Confidence 3334444455666666666666655567666666665554
No 42
>PRK08307 stage III sporulation protein SpoAB; Provisional
Probab=71.15 E-value=13 Score=31.77 Aligned_cols=38 Identities=21% Similarity=0.301 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHH
Q 047939 272 ATAQGKSQLVKAAKTQRSNSSLTCLLLVIFGIVLLILV 309 (314)
Q Consensus 272 ~v~~a~~~L~~A~~~qk~~rk~~~~l~ii~~Ivl~Ivl 309 (314)
+.++=..++..|.+-++++.|..=+|.+++.++++|++
T Consensus 133 ~~e~L~~~~~~a~~~~~k~~Kmy~~LGvl~Gl~lvIlL 170 (171)
T PRK08307 133 ALEHLEREEEEAEEEQKKNEKMYKYLGFLAGLLIVILL 170 (171)
T ss_pred HHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHh
Confidence 33344455667777777766655567666666665554
No 43
>TIGR02833 spore_III_AB stage III sporulation protein AB. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage III sporulation protein AB.
Probab=70.87 E-value=14 Score=31.68 Aligned_cols=38 Identities=24% Similarity=0.406 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHH
Q 047939 272 ATAQGKSQLVKAAKTQRSNSSLTCLLLVIFGIVLLILV 309 (314)
Q Consensus 272 ~v~~a~~~L~~A~~~qk~~rk~~~~l~ii~~Ivl~Ivl 309 (314)
+.++=..++..|.+-++++.|..=+|.+++.++++|++
T Consensus 132 ~~~~L~~~~~~a~~~~~k~~Kmy~~LGvl~Gl~lvIll 169 (170)
T TIGR02833 132 TLEHLERQLTEAEDEQKKNEKMYRYLGVLVGLMIVLLL 169 (170)
T ss_pred HHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHh
Confidence 33334455667777777766655567666666665554
No 44
>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.23 E-value=21 Score=32.37 Aligned_cols=19 Identities=32% Similarity=0.331 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHhC
Q 047939 296 LLLVIFGIVLLILVVVLAA 314 (314)
Q Consensus 296 ~l~ii~~Ivl~Ivl~vv~~ 314 (314)
|+++++++++++++++++|
T Consensus 215 ~~~~il~l~~~~~lvv~i~ 233 (235)
T KOG3202|consen 215 QWCAILLLVGLLLLVVIIF 233 (235)
T ss_pred chhHHHHHHHHHHHHHHHh
Confidence 5666666666666666666
No 45
>PF00523 Fusion_gly: Fusion glycoprotein F0; InterPro: IPR000776 The fusion glycoproteins from this family are found in ssRNA negative-strand viruses. This protein directs fusion of viral and cellular membranes, resulting in viral penetration, and can direct fusion of infected cells with adjoining cells, resulting in the formation of syncytia. The mature form is a dimer of polypeptides F1 and F2 linked by a disulphide bond [].; GO: 0006948 induction by virus of host cell-cell fusion; PDB: 2FYZ_D 3MAW_B 4DAG_A 1G5G_D 1SVF_A 2B9B_A 1G2C_M 3RRT_A 3RRR_D 3RKI_A ....
Probab=69.60 E-value=7.2 Score=39.13 Aligned_cols=35 Identities=20% Similarity=0.153 Sum_probs=22.4
Q ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhcchhh
Q 047939 258 IIDDIGSHIENSQVATAQGKSQLVKAAKTQRSNSSL 293 (314)
Q Consensus 258 ~ID~Ie~Nve~a~~~v~~a~~~L~~A~~~qk~~rk~ 293 (314)
.+| |..++.++...+++|...|.++.+.-.+..++
T Consensus 433 PlD-IS~eL~~vn~sL~~A~~~L~~Sn~iL~~v~~~ 467 (490)
T PF00523_consen 433 PLD-ISSELGQVNNSLNNAKDLLDKSNQILDSVNPG 467 (490)
T ss_dssp HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHTTTT--
T ss_pred ccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 455 66667777777777777777777765555544
No 46
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=68.39 E-value=3.2 Score=31.13 Aligned_cols=32 Identities=16% Similarity=0.265 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhcchhhHHHHHHH
Q 047939 269 SQVATAQGKSQLVKAAKTQRSNSSLTCLLLVI 300 (314)
Q Consensus 269 a~~~v~~a~~~L~~A~~~qk~~rk~~~~l~ii 300 (314)
.+.+......+...|.++.+++|++.++-+++
T Consensus 42 ~kv~~~~~~Gd~~~A~~aS~~Ak~~~~ia~~~ 73 (82)
T PF04505_consen 42 SKVRSRYAAGDYEGARRASRKAKKWSIIAIII 73 (82)
T ss_pred hhhHHHHHCCCHHHHHHHHHHhHHHHHHHHHH
Confidence 44455556667888988888888765544443
No 47
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=68.38 E-value=72 Score=26.93 Aligned_cols=89 Identities=17% Similarity=0.298 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhhHHHHHH
Q 047939 64 QDSTQAVASGIFQINTAVSTFQRLVNTLGTPKDTPELREKIHKTRLHIGQLVKDTSAKLKQASETDHHAQVSADKKIADA 143 (314)
Q Consensus 64 ~~~~~~i~~~I~~I~~~v~~L~~~~~~L~t~~D~~~lr~~I~~l~~~i~~l~~~~~~~lk~l~~~~~~~~~~r~~k~~~~ 143 (314)
.....++...+..+...+..|+.-.+.|...--+.+++..|..+..+ +..+..+|..+..... ..+
T Consensus 78 d~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e----~~~l~~kL~~l~~~~~--~vs-------- 143 (169)
T PF07106_consen 78 DAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEE----IEELEEKLEKLRSGSK--PVS-------- 143 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH----HHHHHHHHHHHHhCCC--CCC--------
Confidence 33455555555555555555655555555555556677777777555 4556677777765322 111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 047939 144 KLAKDFQAVLKEFQKAQRLAAERET 168 (314)
Q Consensus 144 kL~~~f~~~l~~Fq~~Q~~~~~r~k 168 (314)
..+...+...|....+.++.|.|
T Consensus 144 --~ee~~~~~~~~~~~~k~w~kRKr 166 (169)
T PF07106_consen 144 --PEEKEKLEKEYKKWRKEWKKRKR 166 (169)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHH
Confidence 12333455566666666666544
No 48
>PF10717 ODV-E18: Occlusion-derived virus envelope protein ODV-E18; InterPro: IPR019655 Baculovirus occlusion-derived virus (ODV) derives its envelope from an intranuclear membrane source. Occlusion-derived viral envelope proteins that are detected in viral-induced intranuclear microvesicles, but not detected in the plasma membrane, cytoplasmic membranes, or the nuclear envelope. This entry represents ODV-E18 protein which is encoded by baculovirus late genes with transcription initiating from a TAAG motif. ODV-E18 exists as a dimer in the ODV envelope, which contains a hydrophobic domain that putatively acts as a target or retention signal for intranuclear microvesicles []. ; GO: 0019031 viral envelope
Probab=68.17 E-value=5.4 Score=29.93 Aligned_cols=15 Identities=13% Similarity=0.669 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHH
Q 047939 298 LVIFGIVLLILVVVL 312 (314)
Q Consensus 298 ~ii~~Ivl~Ivl~vv 312 (314)
..|++++++|+|+++
T Consensus 28 MtILivLVIIiLlIm 42 (85)
T PF10717_consen 28 MTILIVLVIIILLIM 42 (85)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333444443
No 49
>KOG2150 consensus CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Probab=65.56 E-value=1.6e+02 Score=30.01 Aligned_cols=94 Identities=11% Similarity=0.176 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhccCCCchhhhHHHHHH
Q 047939 65 DSTQAVASGIFQINTAVSTFQRLVNTLGTPKDTPELREKIHK-TRLHIGQLVKDTSAKLKQASETDHHAQVSADKKIADA 143 (314)
Q Consensus 65 ~~~~~i~~~I~~I~~~v~~L~~~~~~L~t~~D~~~lr~~I~~-l~~~i~~l~~~~~~~lk~l~~~~~~~~~~r~~k~~~~ 143 (314)
.+-++|...+.+|+..|..+......+.... +..-+++++. |-.+|+. ..++++.||.....+ +.+ .|-.+.
T Consensus 5 KLq~eIdr~lkKv~Egve~Fd~i~ek~~~~~-n~sqkeK~e~DLKkEIKK-LQRlRdQIKtW~ss~----dIK-DK~~L~ 77 (575)
T KOG2150|consen 5 KLQQEIDRCLKKVDEGVEIFDEIYEKLHSAN-NVSQKEKLESDLKKEIKK-LQRLRDQIKTWQSSS----DIK-DKDSLL 77 (575)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHHHHH-HHHHHHHHHhhhccc----ccc-cHHHHH
Confidence 4677999999999999999988888775444 3444666643 3333332 234555565554332 111 122233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 047939 144 KLAKDFQAVLKEFQKAQRLAAE 165 (314)
Q Consensus 144 kL~~~f~~~l~~Fq~~Q~~~~~ 165 (314)
.-++-....|.+|+.+.+..+.
T Consensus 78 d~RrlIE~~MErfK~vEke~Kt 99 (575)
T KOG2150|consen 78 DNRRLIEQRMERFKAVEKEMKT 99 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHhhc
Confidence 3344556678999999887653
No 50
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=64.57 E-value=1.1e+02 Score=27.55 Aligned_cols=76 Identities=14% Similarity=0.134 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--c---chhHH---------HHHhhHHHHHHHHHHHHHHHHHHHHHhhc
Q 047939 224 IEERELGIQEIQQQIGEVNEVFKDLAVLVHE--Q---GTIID---------DIGSHIENSQVATAQGKSQLVKAAKTQRS 289 (314)
Q Consensus 224 i~eR~~eI~~Ie~~I~eLneiF~dLa~lV~e--Q---Ge~ID---------~Ie~Nve~a~~~v~~a~~~L~~A~~~qk~ 289 (314)
...|+++.++|-.++.+=..=|.+-+.-++. + .+-++ .+-.++..+.+..++..++++++.+.-++
T Consensus 66 qd~reK~~~~I~ssL~eTtkdf~~~~~k~~~dF~~~Lq~~Lk~V~tde~k~~~~~ei~k~r~e~~~ml~evK~~~E~y~k 145 (230)
T PF03904_consen 66 QDIREKNLKEIKSSLEETTKDFIDKTEKVHNDFQDILQDELKDVDTDELKNIAQNEIKKVREENKSMLQEVKQSHEKYQK 145 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777777766556665443321 0 01111 13344555666777777888888777666
Q ss_pred chhhHHHHHH
Q 047939 290 NSSLTCLLLV 299 (314)
Q Consensus 290 ~rk~~~~l~i 299 (314)
+-+++|.-+.
T Consensus 146 ~~k~~~~gi~ 155 (230)
T PF03904_consen 146 RQKSMYKGIG 155 (230)
T ss_pred HHHHHHHhHH
Confidence 6666664333
No 51
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=64.50 E-value=44 Score=22.98 Aligned_cols=54 Identities=11% Similarity=0.318 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHhhcchhHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhc
Q 047939 236 QQIGEVNEVFKDLAVLVHEQGTIIDDIGSHIENSQVATAQGKSQLVKAAKTQRS 289 (314)
Q Consensus 236 ~~I~eLneiF~dLa~lV~eQGe~ID~Ie~Nve~a~~~v~~a~~~L~~A~~~qk~ 289 (314)
..+..|..-..+|..|..+=|..|+.=..-++....++..+...+.++.+.-++
T Consensus 4 ~~l~~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~k 57 (63)
T PF05739_consen 4 EELDELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRANENLKKGNKKLKK 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555555555555555555555555544333
No 52
>PF15605 Toxin_52: Putative toxin 52
Probab=63.86 E-value=69 Score=25.07 Aligned_cols=57 Identities=12% Similarity=0.083 Sum_probs=41.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047939 63 KQDSTQAVASGIFQINTAVSTFQRLVNTLGTPKDTPELREKIHKTRLHIGQLVKDTSAKL 122 (314)
Q Consensus 63 f~~~~~~i~~~I~~I~~~v~~L~~~~~~L~t~~D~~~lr~~I~~l~~~i~~l~~~~~~~l 122 (314)
+.+.++++.+...-+..-...|++. |+.|.=+...|.-+..-..+++..++++.+.+
T Consensus 45 ywdHlqEm~da~~GL~n~~~~le~~---L~np~l~~~~r~~lq~~l~ea~~~l~kiE~~~ 101 (103)
T PF15605_consen 45 YWDHLQEMQDAYRGLVNRKRTLEGS---LKNPNLSGRTRELLQSKLNEANNYLDKIEDFF 101 (103)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHh---cCCCCCchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4778888888887777765555554 78887666677777777777777777776654
No 53
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=63.50 E-value=1.6e+02 Score=29.09 Aligned_cols=101 Identities=22% Similarity=0.249 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCC-CCCcccccccccCccchHHHHHHHHHHHHHHHHHHhhHhhhh
Q 047939 142 DAKLAKDFQAVLKEFQKAQRLAAERETAYTPFVPQAV-LPSSYTAHELDISSDRSAEQHALLVESRRQEVVLLDNEIAFN 220 (314)
Q Consensus 142 ~~kL~~~f~~~l~~Fq~~Q~~~~~r~k~~~~~~~~~~-~~~~~~~~~~~~~~~~~~eqq~l~~~~~~q~~~~~~~E~~~~ 220 (314)
..-|..|+..+...|--++.-..++.+.......... ++... .++ .+. -..+++.+-+- + ..+.|--+
T Consensus 305 ~~DL~dDL~ka~eTf~lVeq~~~eQ~k~~~~~~~~~~~l~i~~-pg~----~~~--~kd~VL~EV~a--L-~PdHEsRL- 373 (426)
T smart00806 305 IADLKEDLEKAEETFDLVEQCCEEQEKGPSKNRNKPVSLPVPT-PGT----FND--LKDQVLMEVRA--L-KPDHESRL- 373 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCcccccCCCccCCCCC-CCC----hhH--HHHHHHHHHHc--c-CCChHHHH-
Confidence 3467888889999999999988887764222111110 11110 010 000 00112221100 0 00111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 047939 221 EAIIEERELGIQEIQQQIGEVNEVFKDLAVLVHEQ 255 (314)
Q Consensus 221 e~~i~eR~~eI~~Ie~~I~eLneiF~dLa~lV~eQ 255 (314)
..-||.+-+++-|.....+++.=.+|+..|.+-
T Consensus 374 --eAIErAEklR~kEle~r~~d~Fq~ELg~FVe~~ 406 (426)
T smart00806 374 --EAIERAEKLREKELEYRRVDEFEKELGNFVENG 406 (426)
T ss_pred --HHHHHHHHHHHHHHHhccccHHHHHHHHHhccC
Confidence 123788889999999999999999999999753
No 54
>KOG3894 consensus SNARE protein Syntaxin 18/UFE1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.94 E-value=1.2e+02 Score=28.55 Aligned_cols=83 Identities=11% Similarity=0.166 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhcc---hhhHHHHHHHHHHHHHHH
Q 047939 232 QEIQQQIGEVNEVFKDLAVLVHEQGTIIDDIGSHIENSQVATAQGKSQLVKAAKTQRSN---SSLTCLLLVIFGIVLLIL 308 (314)
Q Consensus 232 ~~Ie~~I~eLneiF~dLa~lV~eQGe~ID~Ie~Nve~a~~~v~~a~~~L~~A~~~qk~~---rk~~~~l~ii~~Ivl~Iv 308 (314)
..+-..+..+..=..|++.|=+.=-+-|-.=+.||+-..+++..+...++.+.+--+++ +.+.-..++++++|+.++
T Consensus 228 n~~~devrqie~~lvEI~~Lq~ifsehvl~Q~~~Id~I~d~~~~~teNIk~gNe~irka~~~~~~~r~~~lf~llvlsf~ 307 (316)
T KOG3894|consen 228 NELLDEVRQIEKRLVEISALQDIFSEHVLQQDQNIDLIHDLQSGATENIKDGNEEIRKAKRNNGGLRVFLLFFLLVLSFS 307 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHHhcccchhHHHHHHHHHHHH
Confidence 33333444444444555554443344455558999999999999999999887764433 333345566667777777
Q ss_pred HHHHhC
Q 047939 309 VVVLAA 314 (314)
Q Consensus 309 l~vv~~ 314 (314)
++.+-|
T Consensus 308 lLFldw 313 (316)
T KOG3894|consen 308 LLFLDW 313 (316)
T ss_pred HHHHhh
Confidence 777766
No 55
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.76 E-value=20 Score=31.82 Aligned_cols=23 Identities=17% Similarity=0.190 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 047939 266 IENSQVATAQGKSQLVKAAKTQR 288 (314)
Q Consensus 266 ve~a~~~v~~a~~~L~~A~~~qk 288 (314)
++.+.+...+...+|.++.+.-+
T Consensus 165 L~rar~rL~~td~~lgkS~kiL~ 187 (220)
T KOG1666|consen 165 LERARERLRETDANLGKSRKILT 187 (220)
T ss_pred HHHHHHHHHhchhhhhHHHHHHH
Confidence 44555556666666666665543
No 56
>KOG3065 consensus SNAP-25 (synaptosome-associated protein) component of SNARE complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.33 E-value=79 Score=29.30 Aligned_cols=46 Identities=17% Similarity=0.252 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHhhcchhHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 047939 240 EVNEVFKDLAVLVHEQGTIIDDIGSHIENSQVATAQGKSQLVKAAK 285 (314)
Q Consensus 240 eLneiF~dLa~lV~eQGe~ID~Ie~Nve~a~~~v~~a~~~L~~A~~ 285 (314)
|-...=.-...+..+||+.|++||.|++........|.+.|..-..
T Consensus 90 e~~~~g~~Tl~~L~~Q~eQL~rte~~lD~i~~d~~~~er~l~~l~~ 135 (273)
T KOG3065|consen 90 ESREDGSRTLVMLSEQGEQLERTEKNLDDIKVDLKRAERNLTELKG 135 (273)
T ss_pred HHHHHHHHHHHHHHHhHHHHHhHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 3344444556678899999999999999999999999988865443
No 57
>PF02346 Vac_Fusion: Chordopoxvirus fusion protein; InterPro: IPR003436 This is a family of viral fusion proteins from the Chordopoxvirinae. A 14kDa Vaccinia virus protein has been demonstrated to function as a viral fusion protein mediating cell fusion at endosmomal (low) pH []. The protein, found in the envelope fraction of the virions, is required for fusing the outermost of the two golgi-derived membranes enveloping the virus with the plasma membrane, and its subsequent release extracellularly. The N-terminal proximal region is essential for its fusion ability.; GO: 0019064 viral envelope fusion with host membrane, 0019031 viral envelope
Probab=61.44 E-value=44 Score=23.36 Aligned_cols=45 Identities=18% Similarity=0.303 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhHHHHHHHHH
Q 047939 230 GIQEIQQQIGEVNEVFKDLAVLVHEQGTIIDDIGSHIENSQVATA 274 (314)
Q Consensus 230 eI~~Ie~~I~eLneiF~dLa~lV~eQGe~ID~Ie~Nve~a~~~v~ 274 (314)
+++.++.-+..|-..|.....-=..+++.+++.|.++|....++-
T Consensus 2 ~~k~~~~rl~~Lek~~~~~~~~c~~~~~~i~RLE~H~ETlRk~mv 46 (57)
T PF02346_consen 2 RIKDIEERLMVLEKDFRNAIKCCKENSEAIKRLEHHIETLRKYMV 46 (57)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 366777888888888888888889999999999999998876654
No 58
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=60.17 E-value=90 Score=26.70 Aligned_cols=22 Identities=9% Similarity=0.185 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 047939 142 DAKLAKDFQAVLKEFQKAQRLA 163 (314)
Q Consensus 142 ~~kL~~~f~~~l~~Fq~~Q~~~ 163 (314)
...+...+......++..+...
T Consensus 160 ~~~~~~~~~~~~~~~~~l~~~~ 181 (191)
T PF04156_consen 160 VQELRSQLERLQENLQQLEEKI 181 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444443
No 59
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=60.02 E-value=39 Score=24.32 Aligned_cols=46 Identities=17% Similarity=0.237 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhHHHHHHHHHHH
Q 047939 231 IQEIQQQIGEVNEVFKDLAVLVHEQGTIIDDIGSHIENSQVATAQG 276 (314)
Q Consensus 231 I~~Ie~~I~eLneiF~dLa~lV~eQGe~ID~Ie~Nve~a~~~v~~a 276 (314)
|.+||..+.-.-....+|...|.+|...||..+..+......++..
T Consensus 6 i~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~ 51 (69)
T PF04102_consen 6 IEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLREL 51 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5566666666666666777777777777777777776666665554
No 60
>PF06143 Baculo_11_kDa: Baculovirus 11 kDa family; InterPro: IPR009313 This is a family of uncharacterised Baculovirus proteins that are all about 11 kDa in size.
Probab=59.52 E-value=11 Score=28.43 Aligned_cols=7 Identities=29% Similarity=0.273 Sum_probs=3.2
Q ss_pred HHHHHHH
Q 047939 278 SQLVKAA 284 (314)
Q Consensus 278 ~~L~~A~ 284 (314)
.||.+-.
T Consensus 20 DQL~qlV 26 (84)
T PF06143_consen 20 DQLEQLV 26 (84)
T ss_pred HHHHHHH
Confidence 3444444
No 61
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=59.11 E-value=71 Score=23.62 Aligned_cols=53 Identities=21% Similarity=0.295 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCCCHHHHHHHHHHHHHHHHHHH
Q 047939 64 QDSTQAVASGIFQINTAVSTFQRLVNTLGT-PKDTPELREKIHKTRLHIGQLVK 116 (314)
Q Consensus 64 ~~~~~~i~~~I~~I~~~v~~L~~~~~~L~t-~~D~~~lr~~I~~l~~~i~~l~~ 116 (314)
+...-.|...|..+..++..|+..++.+.+ ..+-.++.++++.+...+..+-+
T Consensus 3 ~NILl~Ir~dIk~vd~KVdaLq~~V~~l~~~~~~v~~l~~klDa~~~~l~~l~~ 56 (75)
T PF05531_consen 3 QNILLVIRQDIKAVDDKVDALQTQVDDLESNLPDVTELNKKLDAQSAQLTTLNT 56 (75)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHH
Confidence 345667899999999999999999987754 34556688888877665555443
No 62
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=59.05 E-value=65 Score=23.20 Aligned_cols=28 Identities=18% Similarity=0.108 Sum_probs=14.6
Q ss_pred hhHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 047939 257 TIIDDIGSHIENSQVATAQGKSQLVKAA 284 (314)
Q Consensus 257 e~ID~Ie~Nve~a~~~v~~a~~~L~~A~ 284 (314)
+-++.+|.+...........+.+|.+-.
T Consensus 20 ~~i~~lE~~~~~~e~~i~~~~~~l~~I~ 47 (71)
T PF10779_consen 20 ERIDKLEKRDAANEKDIKNLNKQLEKIK 47 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555665543
No 63
>COG3388 Predicted transcriptional regulator [Transcription]
Probab=57.78 E-value=25 Score=27.11 Aligned_cols=68 Identities=22% Similarity=0.328 Sum_probs=48.2
Q ss_pred ccchhHHhhhcccccccccCcc--chhchhcCCCCCccccc--cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 047939 20 PVGLSAILVSNHTKYQSALEKM--SFQDLEAGRPVSSLRRN--LVNGKQDSTQAVASGIFQINTAVSTFQRLVNTL 91 (314)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~M--Sf~dle~~~~~~~~~~~--~~~~f~~~~~~i~~~I~~I~~~v~~L~~~~~~L 91 (314)
|+|+. =.|+-|.|- -|+. |+-=||.++-=.|+++| .+++|++..+++...+.+|+..++.++...+.+
T Consensus 28 PiGI~--klS~~TGmp--~HKVRYSLRVLEq~~iI~PS~~GAi~td~~~e~ie~i~~dl~ei~e~~~~i~e~~~~l 99 (101)
T COG3388 28 PIGII--KLSDETGMP--EHKVRYSLRVLEQENIISPSRQGAILTDDFPEFIEEIIGDLSEINEEAENIEEDVAKL 99 (101)
T ss_pred CceeE--eechhcCCc--hhhhhhhhhhhhhcCccCccccCCccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66653 357777665 4444 66667766533333455 357899999999999999999999998877654
No 64
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=57.53 E-value=3.2 Score=31.17 Aligned_cols=23 Identities=30% Similarity=0.595 Sum_probs=17.7
Q ss_pred hhhhhccccccchhHHhhhcccc
Q 047939 11 IILAEFSCIPVGLSAILVSNHTK 33 (314)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~ 33 (314)
|+..=|.|.|+|+.||.+|+.++
T Consensus 23 I~s~l~Cc~PlGi~Ai~~s~kv~ 45 (82)
T PF04505_consen 23 IFSTLCCCWPLGIVAIVYSSKVR 45 (82)
T ss_pred HHHHHHHHhhHHHHHheechhhH
Confidence 34344678999999999998763
No 65
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=56.38 E-value=2.8e+02 Score=29.73 Aligned_cols=57 Identities=12% Similarity=0.169 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 047939 228 ELGIQEIQQQIGEVNEVFKDLAVLVHEQGTIIDDIGSHIENSQVATAQGKSQLVKAAKT 286 (314)
Q Consensus 228 ~~eI~~Ie~~I~eLneiF~dLa~lV~eQGe~ID~Ie~Nve~a~~~v~~a~~~L~~A~~~ 286 (314)
..-+..+.+.+..+.+-+.+.+..+..+ ....+..-...+...+........+...|
T Consensus 356 ~~~v~~ik~~l~~~~~~i~~~a~~i~~~--~~~~~s~~~~~~~~~~~~~~~~~~~y~~y 412 (806)
T PF05478_consen 356 SDVVPPIKRDLDSIGKQIRSQAKQIPNQ--IDSNISDILNNTERSSRSFEDEYEKYDSY 412 (806)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHhHHH--HHHHHHHHHHHHHHHhhcchhHHHHHHHH
Confidence 3445556666666666666666666665 45556665666666666666666666555
No 66
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=56.28 E-value=33 Score=27.74 Aligned_cols=29 Identities=10% Similarity=0.449 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047939 221 EAIIEERELGIQEIQQQIGEVNEVFKDLA 249 (314)
Q Consensus 221 e~~i~eR~~eI~~Ie~~I~eLneiF~dLa 249 (314)
..++=|+.+++.++..+|.||.+||++.-
T Consensus 88 LellGEK~E~veEL~~Dv~DlK~myr~Qi 116 (120)
T PF12325_consen 88 LELLGEKSEEVEELRADVQDLKEMYREQI 116 (120)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 35578999999999999999999999753
No 67
>PF01601 Corona_S2: Coronavirus S2 glycoprotein; InterPro: IPR002552 The type I glycoprotein S of Coronavirus, trimers of which constitute the typical viral spikes, is assembled into virions through noncovalent interactions with the M protein. The spike glycoprotein is translated as a large polypeptide that is subsequently cleaved to S1 IPR002551 from INTERPRO and S2 []. Both chimeric S proteins appeared to cause cell fusion when expressed individually, suggesting that they were biologically fully active []. The spike is a type I membrane glycoprotein that possesses a conserved transmembrane anchor and an unusual cysteine-rich (cys) domain that bridges the putative junction of the anchor and the cytoplasmic tail [].; GO: 0006944 cellular membrane fusion, 0046813 virion attachment, binding of host cell surface receptor, 0016021 integral to membrane, 0019031 viral envelope; PDB: 2BEQ_B 2FXP_A 1ZVB_A 1WNC_D 1ZV8_H 1ZV7_B 1WYY_B 1ZVA_A 2BEZ_F 1WDG_A ....
Probab=55.73 E-value=2.6 Score=42.75 Aligned_cols=49 Identities=6% Similarity=0.029 Sum_probs=13.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHhC
Q 047939 265 HIENSQVATAQGKSQLVKAAKTQRSNSSLTCLLLVIFGIVLLILVVVLAA 314 (314)
Q Consensus 265 Nve~a~~~v~~a~~~L~~A~~~qk~~rk~~~~l~ii~~Ivl~Ivl~vv~~ 314 (314)
.++..-.+......+|++-.+|.. +=||-|+.++++++.+++++++++|
T Consensus 519 ~Lq~~I~~LN~tlVdLe~Ln~~e~-YiKWPWyVWL~i~~~li~~~~~l~~ 567 (610)
T PF01601_consen 519 ELQEVIDNLNNTLVDLEWLNRYET-YIKWPWYVWLAIILALIAFALILLW 567 (610)
T ss_dssp HHHHHHHHHHCCHHHCCHHTTCCC-HH-----------------------
T ss_pred HHHHHHHHhhhhheeHHHhcceeE-EeehHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555666666665543 4566665555555555555555554
No 68
>PRK00295 hypothetical protein; Provisional
Probab=53.41 E-value=82 Score=22.64 Aligned_cols=45 Identities=11% Similarity=0.214 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhHHHHHHHHHH
Q 047939 231 IQEIQQQIGEVNEVFKDLAVLVHEQGTIIDDIGSHIENSQVATAQ 275 (314)
Q Consensus 231 I~~Ie~~I~eLneiF~dLa~lV~eQGe~ID~Ie~Nve~a~~~v~~ 275 (314)
|..||..+.-.-....+|+..|.+|+..||.....+......+..
T Consensus 7 i~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~ 51 (68)
T PRK00295 7 VTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEE 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666777777777777777777888887777777776666555544
No 69
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=52.79 E-value=2.3e+02 Score=27.62 Aligned_cols=49 Identities=18% Similarity=0.331 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhcchhHHHHHhhHHHHH
Q 047939 221 EAIIEERELGIQEIQQQIGEVNEV-FKDLAVLVHEQGTIIDDIGSHIENSQ 270 (314)
Q Consensus 221 e~~i~eR~~eI~~Ie~~I~eLnei-F~dLa~lV~eQGe~ID~Ie~Nve~a~ 270 (314)
+.+-+||.+ -.++|..+.|+-++ -.++++|=+++..|=.++.|.-..=.
T Consensus 299 etLQEERyR-~erLEEqLNdlteLqQnEi~nLKqElasmeervaYQsyERa 348 (455)
T KOG3850|consen 299 ETLQEERYR-YERLEEQLNDLTELQQNEIANLKQELASMEERVAYQSYERA 348 (455)
T ss_pred HHHHHHHHH-HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556554 23444444444444 36888888888888887776544333
No 70
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=52.26 E-value=1e+02 Score=23.31 Aligned_cols=12 Identities=33% Similarity=0.636 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHH
Q 047939 296 LLLVIFGIVLLI 307 (314)
Q Consensus 296 ~l~ii~~Ivl~I 307 (314)
++++.+++++++
T Consensus 72 li~~~~~~f~~~ 83 (92)
T PF03908_consen 72 LIFFAFLFFLLV 83 (92)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 71
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=51.98 E-value=73 Score=24.96 Aligned_cols=56 Identities=14% Similarity=0.252 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047939 66 STQAVASGIFQINTAVSTFQRLVNTLGTPKDTPELREKIHKTRLHIGQLVKDTSAKLKQA 125 (314)
Q Consensus 66 ~~~~i~~~I~~I~~~v~~L~~~~~~L~t~~D~~~lr~~I~~l~~~i~~l~~~~~~~lk~l 125 (314)
..+.+...+.+....++.++..++.++|.+|-.+++-.|.. ++.-++.+...++.+
T Consensus 36 ~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~e----l~G~~~~l~~~l~~v 91 (106)
T PF10805_consen 36 DIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAE----LRGELKELSARLQGV 91 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH----HHhHHHHHHHHHHHH
Confidence 44566677777888899999999999988776544444443 355556666666555
No 72
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=51.16 E-value=2.5e+02 Score=27.50 Aligned_cols=70 Identities=20% Similarity=0.183 Sum_probs=49.6
Q ss_pred HHhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 047939 212 LLDNEIAFNEAIIEERELGIQEIQQQIGEVNEVFKDLAVLVHEQGTIIDDIGSHIENSQVATAQGKSQLVKAAK 285 (314)
Q Consensus 212 ~~~~E~~~~e~~i~eR~~eI~~Ie~~I~eLneiF~dLa~lV~eQGe~ID~Ie~Nve~a~~~v~~a~~~L~~A~~ 285 (314)
....|+.--.+..+.+.++|.+....|...++-...=+.-|.++.+.+.. .|...++.++-..+|.++..
T Consensus 214 ~r~~ela~r~aa~Qq~~q~i~qrd~~i~q~~q~iaar~e~I~~re~~lq~----lEt~q~~leqeva~le~yyQ 283 (499)
T COG4372 214 ARTEELARRAAAAQQTAQAIQQRDAQISQKAQQIAARAEQIRERERQLQR----LETAQARLEQEVAQLEAYYQ 283 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 34455555556677777777777777777777777777778888888777 55677778877777777643
No 73
>COG5278 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=51.15 E-value=1.8e+02 Score=25.84 Aligned_cols=11 Identities=9% Similarity=0.211 Sum_probs=4.7
Q ss_pred HHHHHHHHHHH
Q 047939 226 ERELGIQEIQQ 236 (314)
Q Consensus 226 eR~~eI~~Ie~ 236 (314)
++.+-+..++.
T Consensus 105 ~~~~~l~~l~~ 115 (207)
T COG5278 105 ELLESLDDLEP 115 (207)
T ss_pred HHHHHHHHHHH
Confidence 34444444444
No 74
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=50.18 E-value=40 Score=23.71 Aligned_cols=31 Identities=16% Similarity=0.270 Sum_probs=17.2
Q ss_pred HHHHHHHHHHhhcchhhHHHHHHHHHHHHHH
Q 047939 277 KSQLVKAAKTQRSNSSLTCLLLVIFGIVLLI 307 (314)
Q Consensus 277 ~~~L~~A~~~qk~~rk~~~~l~ii~~Ivl~I 307 (314)
.++..+..+..++.+..++.+++++++|.++
T Consensus 25 ~~~~~k~qk~~~~~~~i~~~~~i~~l~v~~~ 55 (59)
T PF09889_consen 25 REEYRKRQKRMRKTQYIFFGIFILFLAVWIF 55 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666666555554444433
No 75
>PHA03240 envelope glycoprotein M; Provisional
Probab=49.46 E-value=13 Score=32.94 Aligned_cols=21 Identities=19% Similarity=0.542 Sum_probs=11.3
Q ss_pred hcchhhHHHHHHHHHHHHHHH
Q 047939 288 RSNSSLTCLLLVIFGIVLLIL 308 (314)
Q Consensus 288 k~~rk~~~~l~ii~~Ivl~Iv 308 (314)
+.+..-+|++++|++|+++|+
T Consensus 208 ~~aaH~~WIiilIIiIiIIIL 228 (258)
T PHA03240 208 KDAAHIAWIFIAIIIIIVIIL 228 (258)
T ss_pred cccchHhHHHHHHHHHHHHHH
Confidence 335555676665555544443
No 76
>PRK04325 hypothetical protein; Provisional
Probab=49.35 E-value=1e+02 Score=22.54 Aligned_cols=45 Identities=16% Similarity=0.197 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhHHHHHHHHHH
Q 047939 231 IQEIQQQIGEVNEVFKDLAVLVHEQGTIIDDIGSHIENSQVATAQ 275 (314)
Q Consensus 231 I~~Ie~~I~eLneiF~dLa~lV~eQGe~ID~Ie~Nve~a~~~v~~ 275 (314)
|.+||.-+.-.-..-.+|+..|.+|+-.|+.....+......++.
T Consensus 11 i~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~ 55 (74)
T PRK04325 11 ITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRD 55 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666677777777777777777666666555543
No 77
>cd07643 I-BAR_IMD_MIM Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Missing In Metastasis. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. Members of this subfamily include missing in metastasis (MIM) or metastasis suppressor 1 (MTSS1), metastasis suppressor 1-like (MTSSL) or ABBA (Actin-Bundling protein with BAIAP2 homology), and similar proteins. They contain an N-terminal IMD and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. MIM was originally identified as a missing transcript from metastatic bladder and prostate cancer cells. It is a scaffold protein that functions in a signaling pathway between the PDGF receptor, Src kinases, and actin assembly. It may also function as a cofactor of the Sonic hedgehog (Shh) transcriptional pathway and may participate in tumor development and progression via this pathway. ABBA regulate
Probab=49.18 E-value=2e+02 Score=25.92 Aligned_cols=12 Identities=50% Similarity=0.606 Sum_probs=8.1
Q ss_pred hhhHHHHHHHHH
Q 047939 218 AFNEAIIEEREL 229 (314)
Q Consensus 218 ~~~e~~i~eR~~ 229 (314)
.+..++++||.+
T Consensus 177 alR~aLiEER~R 188 (231)
T cd07643 177 AVRNALIEERGR 188 (231)
T ss_pred HHHHHHHHHHHH
Confidence 445577888866
No 78
>PRK00736 hypothetical protein; Provisional
Probab=48.79 E-value=99 Score=22.21 Aligned_cols=45 Identities=11% Similarity=0.245 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhHHHHHHHHHH
Q 047939 231 IQEIQQQIGEVNEVFKDLAVLVHEQGTIIDDIGSHIENSQVATAQ 275 (314)
Q Consensus 231 I~~Ie~~I~eLneiF~dLa~lV~eQGe~ID~Ie~Nve~a~~~v~~ 275 (314)
|..||.-+.-.-....+|+..|.+|.-.||....-+......++.
T Consensus 7 i~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~ 51 (68)
T PRK00736 7 LTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLS 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666666666677777777777777666665555443
No 79
>PRK02793 phi X174 lysis protein; Provisional
Probab=48.69 E-value=1e+02 Score=22.39 Aligned_cols=45 Identities=11% Similarity=0.182 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhHHHHHHHHHH
Q 047939 231 IQEIQQQIGEVNEVFKDLAVLVHEQGTIIDDIGSHIENSQVATAQ 275 (314)
Q Consensus 231 I~~Ie~~I~eLneiF~dLa~lV~eQGe~ID~Ie~Nve~a~~~v~~ 275 (314)
|.+||..+.-.-....+|+..|.+|...||.....+.........
T Consensus 10 i~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~ 54 (72)
T PRK02793 10 LAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKA 54 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 556666666666666666677777777777766666555554433
No 80
>PF11598 COMP: Cartilage oligomeric matrix protein; InterPro: IPR024665 Thrombospondins are adhesive glycoproteins that mediate cell-to-cell and cell-to-matrix interactions. Cartilage oligomeric matrix protein may play a role in the structural integrity of cartilage via its interaction with other extracellular matrix proteins such as collagen and fibronectin [, ]. Thrombospondin 3 and 4 and cartilage oligomeric matrix proteins contain a five-stranded coiled-coil domain represented by this entry. This domain has a binding site between two internal rings formed by Leu37 and Thr40 [].; PDB: 1MZ9_D 1FBM_A 1VDF_E.
Probab=48.43 E-value=34 Score=22.66 Aligned_cols=23 Identities=26% Similarity=0.598 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Q 047939 233 EIQQQIGEVNEVFKDLAVLVHEQ 255 (314)
Q Consensus 233 ~Ie~~I~eLneiF~dLa~lV~eQ 255 (314)
.|-..+.++++++.+|-.++.+|
T Consensus 5 ~l~~ql~~l~~~l~elk~~l~~Q 27 (45)
T PF11598_consen 5 QLIKQLSELNQMLQELKELLRQQ 27 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45577888888888888887776
No 81
>smart00397 t_SNARE Helical region found in SNAREs. All alpha-helical motifs that form twisted and parallel four-helix bundles in target soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor proteins. This motif found in "Q-SNAREs".
Probab=48.17 E-value=84 Score=21.23 Aligned_cols=56 Identities=16% Similarity=0.301 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 047939 230 GIQEIQQQIGEVNEVFKDLAVLVHEQGTIIDDIGSHIENSQVATAQGKSQLVKAAK 285 (314)
Q Consensus 230 eI~~Ie~~I~eLneiF~dLa~lV~eQGe~ID~Ie~Nve~a~~~v~~a~~~L~~A~~ 285 (314)
.+.+-...+..|.....++..|..+=|..|+.=...++....++..+...+.+|.+
T Consensus 6 ~~~~~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~d~~~~~~~~~~~ 61 (66)
T smart00397 6 MEEERDEELEQLEKSIGELKQIFLDMGTELEEQGEQLDRIEDNVDDADVNLKKANK 61 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 34555555666666666666666655556655555566666666666666655553
No 82
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=47.16 E-value=1e+02 Score=32.97 Aligned_cols=45 Identities=13% Similarity=0.220 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcchhHHH-HHhhHHHHHHHHHHHH
Q 047939 233 EIQQQIGEVNEVFKDLAVLVHEQGTIIDD-IGSHIENSQVATAQGK 277 (314)
Q Consensus 233 ~Ie~~I~eLneiF~dLa~lV~eQGe~ID~-Ie~Nve~a~~~v~~a~ 277 (314)
++...+.++.....+++.-+..+.+.+-. ++.++.....+++...
T Consensus 354 qt~~~v~~ik~~l~~~~~~i~~~a~~i~~~~~~~~s~~~~~~~~~~ 399 (806)
T PF05478_consen 354 QTSDVVPPIKRDLDSIGKQIRSQAKQIPNQIDSNISDILNNTERSS 399 (806)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Confidence 34444456666666666666666666655 4455555555555443
No 83
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=47.09 E-value=1.4e+02 Score=23.48 Aligned_cols=48 Identities=17% Similarity=0.241 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCC--HHHHHHHHHHHHHHHHHHHHH
Q 047939 71 ASGIFQINTAVSTFQRLVNTLGTPKDT--PELREKIHKTRLHIGQLVKDT 118 (314)
Q Consensus 71 ~~~I~~I~~~v~~L~~~~~~L~t~~D~--~~lr~~I~~l~~~i~~l~~~~ 118 (314)
......++..+++++.+.+.-|++.+. .++|.+++.+.++++.-+..+
T Consensus 11 ~~l~~el~~L~d~lEevL~ssg~~a~~e~~~lR~r~~~~Lk~~r~rl~~~ 60 (104)
T COG4575 11 DQLLAELQELLDTLEEVLKSSGSLAGDEAEELRSKAESALKEARDRLGDT 60 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444455566666677777766655432 345555555544444444333
No 84
>PF00523 Fusion_gly: Fusion glycoprotein F0; InterPro: IPR000776 The fusion glycoproteins from this family are found in ssRNA negative-strand viruses. This protein directs fusion of viral and cellular membranes, resulting in viral penetration, and can direct fusion of infected cells with adjoining cells, resulting in the formation of syncytia. The mature form is a dimer of polypeptides F1 and F2 linked by a disulphide bond [].; GO: 0006948 induction by virus of host cell-cell fusion; PDB: 2FYZ_D 3MAW_B 4DAG_A 1G5G_D 1SVF_A 2B9B_A 1G2C_M 3RRT_A 3RRR_D 3RKI_A ....
Probab=46.24 E-value=13 Score=37.23 Aligned_cols=28 Identities=7% Similarity=0.134 Sum_probs=21.5
Q ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 047939 258 IIDDIGSHIENSQVATAQGKSQLVKAAK 285 (314)
Q Consensus 258 ~ID~Ie~Nve~a~~~v~~a~~~L~~A~~ 285 (314)
.|+++...++++.++++++++-|.+...
T Consensus 439 eL~~vn~sL~~A~~~L~~Sn~iL~~v~~ 466 (490)
T PF00523_consen 439 ELGQVNNSLNNAKDLLDKSNQILDSVNP 466 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3556667788899999999999987764
No 85
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=45.79 E-value=1.3e+02 Score=22.70 Aligned_cols=43 Identities=12% Similarity=0.225 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcc-hhHHHHHhhHHHHHHHHHHH
Q 047939 234 IQQQIGEVNEVFKDLAVLVHEQG-TIIDDIGSHIENSQVATAQG 276 (314)
Q Consensus 234 Ie~~I~eLneiF~dLa~lV~eQG-e~ID~Ie~Nve~a~~~v~~a 276 (314)
|++-+.++.++...++....+.. +.-++++..++.+.+....+
T Consensus 7 l~~l~~d~~~l~~~~~~~~~~~~~~~r~~~~~~~~~a~~~~~~~ 50 (94)
T PF05957_consen 7 LEQLRADLEDLARSAADLAGEKADEARDRAEEALDDARDRAEDA 50 (94)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444443332 22344555555554444433
No 86
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=45.35 E-value=56 Score=21.94 Aligned_cols=19 Identities=21% Similarity=0.375 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 047939 294 TCLLLVIFGIVLLILVVVL 312 (314)
Q Consensus 294 ~~~l~ii~~Ivl~Ivl~vv 312 (314)
+..++++++++++.++..+
T Consensus 19 ~~gl~il~~~vl~ai~~p~ 37 (56)
T PF12911_consen 19 VIGLIILLILVLLAIFAPF 37 (56)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444333
No 87
>PRK10884 SH3 domain-containing protein; Provisional
Probab=44.69 E-value=2.2e+02 Score=25.14 Aligned_cols=40 Identities=5% Similarity=0.101 Sum_probs=19.1
Q ss_pred HHHHHHHHHHhhcchhHHHHHhhHHHHHHHHHHHHHHHHH
Q 047939 243 EVFKDLAVLVHEQGTIIDDIGSHIENSQVATAQGKSQLVK 282 (314)
Q Consensus 243 eiF~dLa~lV~eQGe~ID~Ie~Nve~a~~~v~~a~~~L~~ 282 (314)
+--.+|..-+.+-...+..++..-.......+.+..++..
T Consensus 118 ~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~ 157 (206)
T PRK10884 118 QRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDA 157 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444555555555555555555543
No 88
>PF10717 ODV-E18: Occlusion-derived virus envelope protein ODV-E18; InterPro: IPR019655 Baculovirus occlusion-derived virus (ODV) derives its envelope from an intranuclear membrane source. Occlusion-derived viral envelope proteins that are detected in viral-induced intranuclear microvesicles, but not detected in the plasma membrane, cytoplasmic membranes, or the nuclear envelope. This entry represents ODV-E18 protein which is encoded by baculovirus late genes with transcription initiating from a TAAG motif. ODV-E18 exists as a dimer in the ODV envelope, which contains a hydrophobic domain that putatively acts as a target or retention signal for intranuclear microvesicles []. ; GO: 0019031 viral envelope
Probab=44.39 E-value=26 Score=26.35 Aligned_cols=16 Identities=38% Similarity=0.723 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 047939 295 CLLLVIFGIVLLILVV 310 (314)
Q Consensus 295 ~~l~ii~~Ivl~Ivl~ 310 (314)
-+|+.+++|+++|+++
T Consensus 29 tILivLVIIiLlImlf 44 (85)
T PF10717_consen 29 TILIVLVIIILLIMLF 44 (85)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444445555555543
No 89
>COG4847 Uncharacterized protein conserved in archaea [Function unknown]
Probab=43.31 E-value=1.5e+02 Score=22.88 Aligned_cols=47 Identities=21% Similarity=0.338 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047939 78 NTAVSTFQRLVNTLGTPKDTPELREKIHKTRLHIGQLVKDTSAKLKQ 124 (314)
Q Consensus 78 ~~~v~~L~~~~~~L~t~~D~~~lr~~I~~l~~~i~~l~~~~~~~lk~ 124 (314)
+.....+..+.+.++-+.++++..+.++..++++..+...++.+|.+
T Consensus 56 ~~ll~~~ivllkel~~~Aeseeake~irq~rq~~EklAg~lTkki~e 102 (103)
T COG4847 56 NLLLLYLIVLLKELAVIAESEEAKESIRQVRQEVEKLAGDLTKKIEE 102 (103)
T ss_pred HHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34445567778888889999999999999999999999888888754
No 90
>PF05227 CHASE3: CHASE3 domain; InterPro: IPR007891 CHASE3 is an extracellular sensory domain, which is present in various classes of transmembrane receptors that are upstream of signal transduction pathways in bacteria. Specifically, CHASE3 domains are found in histidine kinases, adenylate cyclases, methyl-accepting chemotaxis proteins and predicted diguanylate cyclases/phosphodiesterases. Environmental factors that are recognised by CHASE3 domains are not known at this time [].; PDB: 3VA9_A.
Probab=43.28 E-value=1.6e+02 Score=23.10 Aligned_cols=93 Identities=14% Similarity=0.202 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhhHHHHHHHHH
Q 047939 67 TQAVASGIFQINTAVSTFQRLVNTLGTPKDTPELREKIHKTRLHIGQLVKDTSAKLKQASETDHHAQVSADKKIADAKLA 146 (314)
Q Consensus 67 ~~~i~~~I~~I~~~v~~L~~~~~~L~t~~D~~~lr~~I~~l~~~i~~l~~~~~~~lk~l~~~~~~~~~~r~~k~~~~kL~ 146 (314)
.+........+...+..|+.++ .|++.....|..+...+..-.......|...................-..+.
T Consensus 41 l~~y~~~~~~~~~~l~~L~~l~------~~~p~q~~~l~~l~~~~~~~~~~~~~~i~~~~~~~~~~a~~~~~~~~~~~~~ 114 (138)
T PF05227_consen 41 LEPYQEARARLEKALAQLRQLV------QDNPEQQERLDQLEELIDQWRELLEPQIALRKSGGMEAARALVNSGEGKQLM 114 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT------TT-HHHHHHHHHHHHHHHHHHHHHHHHHHH-GG-GHHHHHHHHHHHGGG-HH
T ss_pred hchHHHHHHHHHHHHHHHHHHh------cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhcccHHHH
Confidence 3344444444444444444433 3677778888888777777775555555444331110011111222234567
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 047939 147 KDFQAVLKEFQKAQRLAAE 165 (314)
Q Consensus 147 ~~f~~~l~~Fq~~Q~~~~~ 165 (314)
..+...+..|+..+....+
T Consensus 115 ~~i~~~~~~~~~~e~~~l~ 133 (138)
T PF05227_consen 115 DQIRQLLEQIQAEEQRLLK 133 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7778888888777666543
No 91
>PF09125 COX2-transmemb: Cytochrome C oxidase subunit II, transmembrane; InterPro: IPR015209 This N-terminal domain forms the transmembrane region in subunit II of cytochrome c oxidase from Thermus thermophilus. This domain adopts a tertiary structure consisting of two antiparallel transmembrane helices, in a transmembrane helix hairpin fold []. ; PDB: 1EHK_B 2QPE_B 3S8F_B 4EV3_B 3BVD_B 3S8G_B 3EH3_B 3S3C_B 3S39_B 3QJQ_B ....
Probab=43.11 E-value=41 Score=21.21 Aligned_cols=17 Identities=12% Similarity=0.313 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 047939 294 TCLLLVIFGIVLLILVV 310 (314)
Q Consensus 294 ~~~l~ii~~Ivl~Ivl~ 310 (314)
.|+++.++.|+++++++
T Consensus 15 ~Wi~F~l~mi~vFi~li 31 (38)
T PF09125_consen 15 GWIAFALAMILVFIALI 31 (38)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 45455444444444443
No 92
>PF13124 DUF3963: Protein of unknown function (DUF3963)
Probab=42.63 E-value=36 Score=21.36 Aligned_cols=19 Identities=11% Similarity=0.146 Sum_probs=12.1
Q ss_pred HHhhcchhhHHHHHHHHHH
Q 047939 285 KTQRSNSSLTCLLLVIFGI 303 (314)
Q Consensus 285 ~~qk~~rk~~~~l~ii~~I 303 (314)
..||--|...||+.+.+++
T Consensus 15 diqkwirnit~cfal~vv~ 33 (40)
T PF13124_consen 15 DIQKWIRNITFCFALLVVV 33 (40)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3477777777777655443
No 93
>PRK00846 hypothetical protein; Provisional
Probab=42.25 E-value=1.4e+02 Score=22.14 Aligned_cols=46 Identities=7% Similarity=0.052 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhHHHHHHHHHHH
Q 047939 231 IQEIQQQIGEVNEVFKDLAVLVHEQGTIIDDIGSHIENSQVATAQG 276 (314)
Q Consensus 231 I~~Ie~~I~eLneiF~dLa~lV~eQGe~ID~Ie~Nve~a~~~v~~a 276 (314)
|..||..+.-......+|...|..|...||....-+....+..+..
T Consensus 15 i~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~ 60 (77)
T PRK00846 15 LVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKV 60 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5556666666666666666677777777777766666655555443
No 94
>PRK10404 hypothetical protein; Provisional
Probab=42.17 E-value=1.6e+02 Score=22.88 Aligned_cols=16 Identities=13% Similarity=0.175 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHhhcch
Q 047939 276 GKSQLVKAAKTQRSNS 291 (314)
Q Consensus 276 a~~~L~~A~~~qk~~r 291 (314)
+..-...+..|-+.+.
T Consensus 65 ~k~aa~~td~yV~e~P 80 (101)
T PRK10404 65 AKQAVYRADDYVHEKP 80 (101)
T ss_pred HHHHHHHHHHHHHhCc
Confidence 3333444455555433
No 95
>COG4068 Uncharacterized protein containing a Zn-ribbon [Function unknown]
Probab=41.17 E-value=82 Score=22.12 Aligned_cols=10 Identities=50% Similarity=0.524 Sum_probs=4.6
Q ss_pred HHHHHHHhhc
Q 047939 280 LVKAAKTQRS 289 (314)
Q Consensus 280 L~~A~~~qk~ 289 (314)
|.+-++.+|.
T Consensus 33 l~ker~R~r~ 42 (64)
T COG4068 33 LNKERKRQRN 42 (64)
T ss_pred HHHHHHHHHH
Confidence 4454444443
No 96
>PRK13848 conjugal transfer protein TraC; Provisional
Probab=41.00 E-value=1.3e+02 Score=23.20 Aligned_cols=61 Identities=18% Similarity=0.328 Sum_probs=42.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 047939 96 DTPELREKIHKTRLHIGQLVKDTSAKLKQASETDHHAQVSADKKIADAKLAKDFQAVLKEFQKAQ 160 (314)
Q Consensus 96 D~~~lr~~I~~l~~~i~~l~~~~~~~lk~l~~~~~~~~~~r~~k~~~~kL~~~f~~~l~~Fq~~Q 160 (314)
.+.+++.+|..+.++.+.+.+.--++|-.+.-...- -.-..--..|...|.++..+|+.-+
T Consensus 4 ~~s~I~~eI~kLqe~lk~~e~keAERigRiAlKAGL----geieI~d~eL~~aFeeiAaRFR~g~ 64 (98)
T PRK13848 4 PSSKIREEIAKLQEQLKQAETREAERIGRIALKAGL----GEIEIEEAELQAAFEELAKRFRGGK 64 (98)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc----cccccCHHHHHHHHHHHHHHHhcCC
Confidence 457789999999999999888888888777654320 0001113467888888888887644
No 97
>PF01017 STAT_alpha: STAT protein, all-alpha domain; InterPro: IPR013800 The STAT protein (Signal Transducers and Activators of Transcription) family contains transcription factors that are specifically activated to regulate gene transcription when cells encounter cytokines and growth factors, hence they act as signal transducers in the cytoplasm and transcription activators in the nucleus []. Binding of these factors to cell-surface receptors leads to receptor autophosphorylation at a tyrosine, the phosphotyrosine being recognised by the STAT SH2 domain, which mediates the recruitment of STAT proteins from the cytosol and their association with the activated receptor. The STAT proteins are then activated by phosphorylation via members of the JAK family of protein kinases, causing them to dimerise and translocated to the nucleus, where they bind to specific promoter sequences in target genes. In mammals, STATs comprise a family of seven structurally and functionally related proteins: Stat1, Stat2, Stat3, Stat4, Stat5a and Stat5b, Stat6. STAT proteins play a critical role in regulating innate and acquired host immune responses. Dysregulation of at least two STAT signalling cascades (i.e. Stat3 and Stat5) is associated with cellular transformation. Signalling through the JAK/STAT pathway is initiated when a cytokine binds to its corresponding receptor. This leads to conformational changes in the cytoplasmic portion of the receptor, initiating activation of receptor associated members of the JAK family of kinases. The JAKs, in turn, mediate phosphorylation at the specific receptor tyrosine residues, which then serve as docking sites for STATs and other signalling molecules. Once recruited to the receptor, STATs also become phosphorylated by JAKs, on a single tyrosine residue. Activated STATs dissociate from the receptor, dimerise, translocate to the nucleus and bind to members of the GAS (gamma activated site) family of enhancers. The seven STAT proteins identified in mammals range in size from 750 and 850 amino acids. The chromosomal distribution of these STATs, as well as the identification of STATs in more primitive eukaryotes, suggest that this family arose from a single primordial gene. STATs share structurally and functionally conserved domains including: an N-terminal domain that strengthens interactions between STAT dimers on adjacent DNA-binding sites; a coiled-coil STAT domain that is implicated in protein-protein interactions; a DNA-binding domain with an immunoglobulin-like fold similar to p53 tumour suppressor protein; an EF-hand-like linker domain connecting the DNA-binding and SH2 domains; an SH2 domain (IPR000980 from INTERPRO) that acts as a phosphorylation-dependent switch to control receptor recognition and DNA-binding; and a C-terminal transactivation domain []. The crystal structure of the N terminus of Stat4 reveals a dimer. The interface of this dimer is formed by a ring-shaped element consisting of five short helices. Several studies suggest that this N-terminal dimerisation promotes cooperativity of binding to tandem GAS elements and with the transcriptional coactivator CBP/p300. This entry represents the all-alpha helical domain, which consists of four long helices arranged in a bundle with a left-handed twist (coiled-coil), which in turn forms a right-handed superhelix.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0004871 signal transducer activity, 0006355 regulation of transcription, DNA-dependent, 0007165 signal transduction, 0005634 nucleus; PDB: 1YVL_A 1BF5_A 3CWG_B 1BG1_A 1Y1U_B.
Probab=40.79 E-value=1.4e+02 Score=25.69 Aligned_cols=55 Identities=15% Similarity=0.299 Sum_probs=40.0
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 047939 61 NGKQDSTQAVASGIFQINTAVSTFQRLVNTLGTPKDTPELREKIHKTRLHIGQLVKD 117 (314)
Q Consensus 61 ~~f~~~~~~i~~~I~~I~~~v~~L~~~~~~L~t~~D~~~lr~~I~~l~~~i~~l~~~ 117 (314)
++.+.+|+.++..+.+++..+..++.+...+....| .+...+..+.+.++.+++.
T Consensus 124 D~LQ~wfe~LAe~l~qlrqqlk~l~~l~~k~~~~~d--~~~~~~~~L~~~v~~ll~~ 178 (182)
T PF01017_consen 124 DQLQNWFESLAEILWQLRQQLKKLEELQQKLTYEND--PIPDQLPQLNERVTELLKN 178 (182)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS--TT---THHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC--chhhhHHHHHHHHHHHHHH
Confidence 467999999999999999999999999888754443 2455666666666666544
No 98
>PRK04406 hypothetical protein; Provisional
Probab=40.75 E-value=1.5e+02 Score=21.84 Aligned_cols=44 Identities=11% Similarity=0.207 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhHHHHHHHHH
Q 047939 231 IQEIQQQIGEVNEVFKDLAVLVHEQGTIIDDIGSHIENSQVATA 274 (314)
Q Consensus 231 I~~Ie~~I~eLneiF~dLa~lV~eQGe~ID~Ie~Nve~a~~~v~ 274 (314)
|..||.-+.-.-....+|+..|.+|.-.||.....+......+.
T Consensus 13 i~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~ 56 (75)
T PRK04406 13 INDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVK 56 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666677777777777777777766666655443
No 99
>PF07820 TraC: TraC-like protein; InterPro: IPR012930 The members of this family are sequences that are similar to TraC (Q84HT8 from SWISSPROT) from Rhizobium etli. The gene encoding this protein is one of a group of genes found on plasmid p42a of Rhizobium etli (strain CFN 42/ATCC 51251) that are thought to be involved in the process of plasmid self-transmission. Mobilisation of plasmid p42a is of importance as it is required for transfer of plasmid p42d, the symbiotic plasmid which carries most of the genes required for nodulation and nitrogen fixation by this symbiotic bacterium. The predicted protein products of p42a are similar to known transfer proteins of Agrobacterium tumefaciens plasmid pTiC58 []. ; GO: 0000746 conjugation
Probab=40.67 E-value=1.2e+02 Score=23.36 Aligned_cols=62 Identities=19% Similarity=0.367 Sum_probs=41.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047939 97 TPELREKIHKTRLHIGQLVKDTSAKLKQASETDHHAQVSADKKIADAKLAKDFQAVLKEFQKAQRL 162 (314)
Q Consensus 97 ~~~lr~~I~~l~~~i~~l~~~~~~~lk~l~~~~~~~~~~r~~k~~~~kL~~~f~~~l~~Fq~~Q~~ 162 (314)
..+++.+|..+.++.+...++--++|-.+.-...-. --.+--+.|...|.++..+|++-...
T Consensus 4 ~s~I~~eIekLqe~lk~~e~keaERigr~AlKaGL~----eieI~d~eL~~~FeeIa~RFrk~~~~ 65 (92)
T PF07820_consen 4 SSKIREEIEKLQEQLKQAETKEAERIGRIALKAGLG----EIEISDAELQAAFEEIAARFRKGKKK 65 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc----cccCCHHHHHHHHHHHHHHHhccccc
Confidence 356888899998888888888888887776543210 00111356888888888888776543
No 100
>KOG4025 consensus Putative apoptosis related protein [Function unknown]
Probab=39.87 E-value=2.4e+02 Score=24.19 Aligned_cols=18 Identities=11% Similarity=0.353 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHcC
Q 047939 75 FQINTAVSTFQRLVNTLG 92 (314)
Q Consensus 75 ~~I~~~v~~L~~~~~~L~ 92 (314)
++++...-.|++....+.
T Consensus 96 qeLn~ka~aLk~iLSriP 113 (207)
T KOG4025|consen 96 QELNKKAIALKRILSRIP 113 (207)
T ss_pred HHHHHHHHHHHHHHHhCc
Confidence 445555566666666554
No 101
>cd07685 F-BAR_Fes The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) tyrosine kinase. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), is a cytoplasmic (or nonreceptor) tyrosine kinase whose gene was first isolated from tumor-causing retroviruses. It is expressed in myeloid, vascular endothelial, epithelial, and neuronal cells, and plays important roles in cell growth and differentiation, angiogenesis, inflammation and immunity, and cytoskeletal regulation. Fes kinase has also been implicated as a tumor suppressor in colorectal cancer. It contains an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane def
Probab=39.79 E-value=2.9e+02 Score=25.05 Aligned_cols=26 Identities=19% Similarity=0.060 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 047939 102 EKIHKTRLHIGQLVKDTSAKLKQASE 127 (314)
Q Consensus 102 ~~I~~l~~~i~~l~~~~~~~lk~l~~ 127 (314)
++|..+..+...+-+.....+..+..
T Consensus 98 ~kLs~L~~~k~~~rK~~~~~~q~i~~ 123 (237)
T cd07685 98 SKLSLLIRDKQQLRKTFSEQWQLLKQ 123 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666655555555555555543
No 102
>PF00517 GP41: Retroviral envelope protein; InterPro: IPR000328 This entry represents envelope proteins from a variety of retroviruses. It includes the GP41 subunit of the envelope protein complex from Human immunodeficiency virus (HIV) and Simian-Human immunodeficiency virus (SIV), which mediate membrane fusion during viral entry []. It has a core composed of a six-helix bundle and is folded by its trimeric N- and C-terminal heptad-repeats (NHR and CHR) []. Derivatives of this protein prevent HIV-1 from entering cell lines and primary human CD4+ cells in vitro [], making it an attractive subject of gene therapy studies against HIV and related retroviruses. The entry also represents envelop proteins from Bovine immunodeficiency virus, Feline immunodeficiency virus and Equine infectious anemia virus (EIAV) [, ], as well as the Gp36 protein from Mouse mammary tumor virus (MMTV) and Human endogenous retrovirus (HERV).; GO: 0005198 structural molecule activity, 0019031 viral envelope; PDB: 2EZO_B 2EZQ_B 2EZR_A 2JNR_B 1F23_D 2EZP_A 1JEK_A 2Q7C_A 2Q5U_A 2Q3I_A ....
Probab=39.64 E-value=78 Score=27.89 Aligned_cols=18 Identities=17% Similarity=0.141 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 047939 224 IEERELGIQEIQQQIGEV 241 (314)
Q Consensus 224 i~eR~~eI~~Ie~~I~eL 241 (314)
..+-++++.+++..|.++
T Consensus 103 w~~W~~~i~~~~~~i~~l 120 (204)
T PF00517_consen 103 WQQWEKEISNYTGNIYNL 120 (204)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccHHHHHHH
Confidence 456777888887776655
No 103
>PF06789 UPF0258: Uncharacterised protein family (UPF0258); InterPro: IPR009626 This is a group of proteins of unknown function.
Probab=39.47 E-value=18 Score=30.32 Aligned_cols=14 Identities=21% Similarity=0.354 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHhhc
Q 047939 276 GKSQLVKAAKTQRS 289 (314)
Q Consensus 276 a~~~L~~A~~~qk~ 289 (314)
|-.-|-|-.+.+.+
T Consensus 115 GyDsLLKkKEae~k 128 (159)
T PF06789_consen 115 GYDSLLKKKEAELK 128 (159)
T ss_pred chHHHHHHHHHHHH
Confidence 44445554444444
No 104
>PF03310 Cauli_DNA-bind: Caulimovirus DNA-binding protein; InterPro: IPR004986 The gene III product (P15) of cauliflower mosaic virus (CaMV) is a DNA binding protein in which the DNA binding activity is located on its C-terminal part. A family of related proteins is expressed by other members of the Caulimoviridae.; GO: 0003677 DNA binding; PDB: 3F6N_A 3K4T_D.
Probab=38.99 E-value=2.1e+02 Score=23.16 Aligned_cols=52 Identities=12% Similarity=0.181 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHHHHHHHHHHH
Q 047939 67 TQAVASGIFQINTAVSTFQRLVNTLGTPKD-TPELREKIHKTRLHIGQLVKDT 118 (314)
Q Consensus 67 ~~~i~~~I~~I~~~v~~L~~~~~~L~t~~D-~~~lr~~I~~l~~~i~~l~~~~ 118 (314)
..+|+..+..+....+.|..++..+++... +..+..=-..++.++.+.+.+|
T Consensus 5 ~kEi~~l~~~lk~~~~~i~ailek~~s~~~~~e~lEsiAAKIIkDisdkIdkC 57 (121)
T PF03310_consen 5 IKEISELIQELKKIESDIKAILEKLQSTEQDQENLESIAAKIIKDISDKIDKC 57 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTS--HHHHHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHhc
Confidence 345555555555555666666666655443 3333333344555666666665
No 105
>PRK11637 AmiB activator; Provisional
Probab=38.94 E-value=3.8e+02 Score=26.18 Aligned_cols=46 Identities=11% Similarity=0.193 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhHHHH
Q 047939 224 IEERELGIQEIQQQIGEVNEVFKDLAVLVHEQGTIIDDIGSHIENS 269 (314)
Q Consensus 224 i~eR~~eI~~Ie~~I~eLneiF~dLa~lV~eQGe~ID~Ie~Nve~a 269 (314)
..+...+-.+|+....+-......|..-..++...+...+.+....
T Consensus 200 ~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~l~~~~~~L 245 (428)
T PRK11637 200 LYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQLSELRANESRL 245 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444444444333
No 106
>PF08999 SP_C-Propep: Surfactant protein C, N terminal propeptide; InterPro: IPR015091 The N-terminal propeptide of surfactant protein C adopts an alpha-helical structure, with turn and extended regions. Its main function is the stabilisation of metastable surfactant protein C (SP-C), since the latter can irreversibly transform from its native alpha-helical structure to beta-sheet aggregates and form amyloid-like fibrils. The correct intracellular trafficking of proSP-C has also been reported to depend on the propeptide []. ; PDB: 1SPF_A 2YAD_F.
Probab=38.31 E-value=28 Score=26.07 Aligned_cols=13 Identities=15% Similarity=0.309 Sum_probs=5.5
Q ss_pred hhHHHHHHHHHHH
Q 047939 292 SLTCLLLVIFGIV 304 (314)
Q Consensus 292 k~~~~l~ii~~Iv 304 (314)
|+..|++++++++
T Consensus 34 KrlliivvVvVlv 46 (93)
T PF08999_consen 34 KRLLIIVVVVVLV 46 (93)
T ss_dssp HHHHHHHHHHHHH
T ss_pred ceEEEEEEeeehh
Confidence 3344444444333
No 107
>PRK07521 flgK flagellar hook-associated protein FlgK; Validated
Probab=38.28 E-value=4.2e+02 Score=26.48 Aligned_cols=79 Identities=15% Similarity=0.136 Sum_probs=34.5
Q ss_pred hhcccccccccCccchhchhcCCCCCccccccCCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 047939 28 VSNHTKYQSALEKMSFQDLEAGRPVSSLRRNLVNGK-QDSTQAVASGIFQINTAVSTFQRLVNTLGTPKDTPELREKIHK 106 (314)
Q Consensus 28 ~~~~~~~~~~~~~MSf~dle~~~~~~~~~~~~~~~f-~~~~~~i~~~I~~I~~~v~~L~~~~~~L~t~~D~~~lr~~I~~ 106 (314)
+||+..+|=..+...+.....|....+.++-+ ++| ......-......-....+.|.++-..++.+.+...+...|+.
T Consensus 28 IANanT~GYsRQ~~~~~s~~~Gv~v~~i~R~~-D~fl~~q~r~~~s~~~~~~~~~~~l~~le~~~~e~~~~~gl~~~l~~ 106 (483)
T PRK07521 28 IANAGTPGYSRREASLVSGPAGGQVVGISRAQ-DPALLAQRLLATSAAAAQDTLADGLERLASTVGDNDYEGSPSARLSD 106 (483)
T ss_pred cccCCCCCcceeEEEeeecCCCcEEEEEEEcc-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHH
Confidence 46777787445544444322222221112222 333 2333333333334444444555555556655544444444443
Q ss_pred H
Q 047939 107 T 107 (314)
Q Consensus 107 l 107 (314)
+
T Consensus 107 f 107 (483)
T PRK07521 107 F 107 (483)
T ss_pred H
Confidence 3
No 108
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=38.06 E-value=1.8e+02 Score=22.76 Aligned_cols=44 Identities=18% Similarity=0.258 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhHHHHHHH
Q 047939 229 LGIQEIQQQIGEVNEVFKDLAVLVHEQGTIIDDIGSHIENSQVA 272 (314)
Q Consensus 229 ~eI~~Ie~~I~eLneiF~dLa~lV~eQGe~ID~Ie~Nve~a~~~ 272 (314)
+.|..+.+.+.-.-+=.+.|..-+..||++++.|..-+......
T Consensus 53 eqI~kL~e~V~~QGEqIkel~~e~k~qgktL~~I~~~L~~inkR 96 (102)
T PF01519_consen 53 EQINKLTEKVDKQGEQIKELQVEQKAQGKTLQLILKTLQSINKR 96 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555556666666666668888888888776665544
No 109
>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.53 E-value=90 Score=27.53 Aligned_cols=28 Identities=18% Similarity=0.450 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhHH
Q 047939 230 GIQEIQQQIGEVNEVFKDLAVLVHEQGTIIDDIGSHIE 267 (314)
Q Consensus 230 eI~~Ie~~I~eLneiF~dLa~lV~eQGe~ID~Ie~Nve 267 (314)
++.+|.+-=.++.| --|-|+++||.=.+
T Consensus 123 ~id~lskvkaqv~e----------vk~vM~eNIekvld 150 (217)
T KOG0859|consen 123 EISKLAKVKAQVTE----------VKGVMMENIEKVLD 150 (217)
T ss_pred chhHHHHHHHHHHH----------HHHHHHHHHHHHHh
Confidence 35555555444443 35778888876543
No 110
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=36.51 E-value=2.1e+02 Score=23.37 Aligned_cols=36 Identities=14% Similarity=0.357 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhh
Q 047939 230 GIQEIQQQIGEVNEVFKDLAVLVHEQGTIIDDIGSH 265 (314)
Q Consensus 230 eI~~Ie~~I~eLneiF~dLa~lV~eQGe~ID~Ie~N 265 (314)
++..+..++..++.-+..+..+|..=+.-|+.||+|
T Consensus 90 eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ie~~ 125 (126)
T PF07889_consen 90 EVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEIEEK 125 (126)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 333444444444444444444444444455555543
No 111
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=36.38 E-value=77 Score=23.64 Aligned_cols=29 Identities=34% Similarity=0.515 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047939 224 IEERELGIQEIQQQIGEVNEVFKDLAVLV 252 (314)
Q Consensus 224 i~eR~~eI~~Ie~~I~eLneiF~dLa~lV 252 (314)
++++.++|+.++..+.-..++..++..+|
T Consensus 54 ~eeq~~~i~~Le~~i~~k~~~L~~~~~~~ 82 (83)
T PF07544_consen 54 VEEQEEEIEELEEQIRKKREVLQKFKERV 82 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 67888889999999999999888888776
No 112
>PF11239 DUF3040: Protein of unknown function (DUF3040); InterPro: IPR021401 Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed.
Probab=36.04 E-value=39 Score=25.10 Aligned_cols=15 Identities=7% Similarity=0.266 Sum_probs=8.4
Q ss_pred hHHHHHhhHHHHHHH
Q 047939 258 IIDDIGSHIENSQVA 272 (314)
Q Consensus 258 ~ID~Ie~Nve~a~~~ 272 (314)
.++.||.+.....-.
T Consensus 10 ~L~eiEr~L~~~DP~ 24 (82)
T PF11239_consen 10 RLEEIERQLRADDPR 24 (82)
T ss_pred HHHHHHHHHHhcCcH
Confidence 566666666544333
No 113
>PRK10132 hypothetical protein; Provisional
Probab=35.62 E-value=2.2e+02 Score=22.47 Aligned_cols=11 Identities=0% Similarity=0.169 Sum_probs=4.8
Q ss_pred HHHHhhHHHHH
Q 047939 260 DDIGSHIENSQ 270 (314)
Q Consensus 260 D~Ie~Nve~a~ 270 (314)
++++..+..+.
T Consensus 48 ~r~~~~L~~ar 58 (108)
T PRK10132 48 RKAQALLKETR 58 (108)
T ss_pred HHHHHHHHHHH
Confidence 34444444444
No 114
>PF11657 Activator-TraM: Transcriptional activator TraM
Probab=34.83 E-value=2.7e+02 Score=23.24 Aligned_cols=10 Identities=10% Similarity=0.003 Sum_probs=4.2
Q ss_pred HhhcchhhHH
Q 047939 286 TQRSNSSLTC 295 (314)
Q Consensus 286 ~qk~~rk~~~ 295 (314)
.-+++|+..+
T Consensus 114 ~~~~~r~~a~ 123 (144)
T PF11657_consen 114 LVREARKAAI 123 (144)
T ss_pred HHHHHHHHHH
Confidence 3344444433
No 115
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []. This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=34.47 E-value=3.5e+02 Score=24.45 Aligned_cols=93 Identities=11% Similarity=0.183 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhccCCCchhhhHHHHHH
Q 047939 65 DSTQAVASGIFQINTAVSTFQRLVNTLGTPKDTPELREKIHK-TRLHIGQLVKDTSAKLKQASETDHHAQVSADKKIADA 143 (314)
Q Consensus 65 ~~~~~i~~~I~~I~~~v~~L~~~~~~L~t~~D~~~lr~~I~~-l~~~i~~l~~~~~~~lk~l~~~~~~~~~~r~~k~~~~ 143 (314)
.+-.+|...+.+++..+..+......+.+.. ++.-+++++. |-.+|+. ..++++.|+.+...+ ..+ .+..+.
T Consensus 5 KLQ~Eid~~lKkv~EG~~~F~~i~~K~~~~~-n~~QKEK~E~DLKkEIKK-LQR~RdQIK~W~~~~----diK-dk~~L~ 77 (233)
T PF04065_consen 5 KLQQEIDRTLKKVQEGVEEFDEIYEKVESAT-NQNQKEKLEADLKKEIKK-LQRLRDQIKTWLSSN----DIK-DKKKLL 77 (233)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CcchHHHHHHHHHHHHHH-HHHHHHHHHHHccCc----ccc-cHHHHH
Confidence 3556788888888888888888887665422 2333566644 3333333 345666777665432 122 334455
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 047939 144 KLAKDFQAVLKEFQKAQRLAA 164 (314)
Q Consensus 144 kL~~~f~~~l~~Fq~~Q~~~~ 164 (314)
-.++.....|.+|..+.+..+
T Consensus 78 e~Rk~IE~~MErFK~vEkesK 98 (233)
T PF04065_consen 78 ENRKLIEEQMERFKVVEKESK 98 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 566777778999999987754
No 116
>KOG3251 consensus Golgi SNAP receptor complex member [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.26 E-value=2e+02 Score=25.64 Aligned_cols=37 Identities=11% Similarity=0.063 Sum_probs=22.8
Q ss_pred HhhcchhHHHHHhhHHHHHHHHHHHHHHHHHHHHHhh
Q 047939 252 VHEQGTIIDDIGSHIENSQVATAQGKSQLVKAAKTQR 288 (314)
Q Consensus 252 V~eQGe~ID~Ie~Nve~a~~~v~~a~~~L~~A~~~qk 288 (314)
+.+|+..|-.+-.-+-....-+.=.+.-|.--.+.-+
T Consensus 152 l~~Q~~~L~~~~~ki~~~~ntLGlSn~ti~lIeRR~~ 188 (213)
T KOG3251|consen 152 LVEQRLTLKGTQKKILDILNTLGLSNQTIRLIERRVR 188 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 4578887777776666666665555555555544433
No 117
>PF11190 DUF2976: Protein of unknown function (DUF2976); InterPro: IPR021356 Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in a region flanked by markers of conjugative transfer and/or transposition.
Probab=33.90 E-value=76 Score=24.16 Aligned_cols=43 Identities=16% Similarity=0.262 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhcchhh-HHHHHHHHHHHHHHHHHH
Q 047939 269 SQVATAQGKSQLVKAAKTQRSNSSL-TCLLLVIFGIVLLILVVV 311 (314)
Q Consensus 269 a~~~v~~a~~~L~~A~~~qk~~rk~-~~~l~ii~~Ivl~Ivl~v 311 (314)
+..-.--+..-+...++.+.....| .+...+++.+++++++++
T Consensus 36 a~afi~Va~~~i~~y~eir~gK~~W~~fg~~~vVGvvLlv~viw 79 (87)
T PF11190_consen 36 AAAFIVVAKAAISTYNEIRDGKKTWGDFGATVVVGVVLLVFVIW 79 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHcCcccHHHhhhHHHHHHHHHHHHHH
Confidence 3444444555566666665422222 334444444444444444
No 118
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=32.06 E-value=39 Score=26.29 Aligned_cols=7 Identities=14% Similarity=0.643 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 047939 306 LILVVVL 312 (314)
Q Consensus 306 ~Ivl~vv 312 (314)
+|++.+|
T Consensus 75 lVily~I 81 (101)
T PF06024_consen 75 LVILYAI 81 (101)
T ss_pred HHHHhhh
Confidence 3333333
No 119
>PF04906 Tweety: Tweety; InterPro: IPR006990 None of the members of the tweety (tty) family have been functionally characterised. However, they are considered to be transmembrane proteins with five potential membrane-spanning regions. A number of potential functions have been suggested on the basis of homology to the yeast FTR1 and FTH1 iron transporter proteins and the mammalian neurotensin receptors 1 and 2 in that they have a similar hydrophobicity profiles although there is no detectable sequence homology to the tweety-related proteins. It has been proposed that the tweety-related proteins could be involved in transport of iron or other divalent cations or alternatively that they may be membrane-bound receptors [].
Probab=31.93 E-value=88 Score=30.67 Aligned_cols=9 Identities=22% Similarity=0.730 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 047939 237 QIGEVNEVF 245 (314)
Q Consensus 237 ~I~eLneiF 245 (314)
.+..|.++|
T Consensus 126 ~l~~Le~~~ 134 (406)
T PF04906_consen 126 HLTRLEEIF 134 (406)
T ss_pred HHHHHHHHh
Confidence 333333333
No 120
>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.
Probab=31.61 E-value=2e+02 Score=23.62 Aligned_cols=40 Identities=25% Similarity=0.448 Sum_probs=20.6
Q ss_pred HHHHHHHHH-HHHHHHHcCCCC--CCHHHHHHHHHHHHHHHHH
Q 047939 75 FQINTAVST-FQRLVNTLGTPK--DTPELREKIHKTRLHIGQL 114 (314)
Q Consensus 75 ~~I~~~v~~-L~~~~~~L~t~~--D~~~lr~~I~~l~~~i~~l 114 (314)
.++...+.+ +.+.++.||-|. |-..|+.+|+.|...+..+
T Consensus 86 dklE~~fd~rV~~aL~rLgvPs~~dv~~L~~rId~L~~~v~~l 128 (132)
T PF05597_consen 86 DKLEQAFDERVARALNRLGVPSRKDVEALSARIDQLTAQVERL 128 (132)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 334443333 555666677654 4455556665555444433
No 121
>COG4640 Predicted membrane protein [Function unknown]
Probab=31.48 E-value=44 Score=32.48 Aligned_cols=28 Identities=18% Similarity=0.094 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHhhcc-hhhHHHHHHHH
Q 047939 274 AQGKSQLVKAAKTQRSN-SSLTCLLLVIF 301 (314)
Q Consensus 274 ~~a~~~L~~A~~~qk~~-rk~~~~l~ii~ 301 (314)
.+|++.+..-..-.|++ .|++.+++..+
T Consensus 30 sqan~~tn~i~~trrkniskK~ii~was~ 58 (465)
T COG4640 30 SQANKSTNEIIQTRRKNISKKKIIPWASG 58 (465)
T ss_pred hhhhHHHHHHHHhhccCCccceeehhHHH
Confidence 45555554443333433 44444444333
No 122
>PF14812 PBP1_TM: Transmembrane domain of transglycosylase PBP1 at N-terminal; PDB: 3FWL_A 3VMA_A.
Probab=31.43 E-value=2.7 Score=31.47 Aligned_cols=11 Identities=27% Similarity=0.304 Sum_probs=0.4
Q ss_pred hhcchhhHHHH
Q 047939 287 QRSNSSLTCLL 297 (314)
Q Consensus 287 qk~~rk~~~~l 297 (314)
.++.|+|.|+|
T Consensus 61 ~rkKrrwlwLl 71 (81)
T PF14812_consen 61 PRKKRRWLWLL 71 (81)
T ss_dssp ----------T
T ss_pred ccccchhHHHH
Confidence 44445444433
No 123
>COG1256 FlgK Flagellar hook-associated protein [Cell motility and secretion]
Probab=31.08 E-value=4.1e+02 Score=27.26 Aligned_cols=25 Identities=8% Similarity=0.170 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 047939 64 QDSTQAVASGIFQINTAVSTFQRLV 88 (314)
Q Consensus 64 ~~~~~~i~~~I~~I~~~v~~L~~~~ 88 (314)
...++.+...+..+...+..+++.+
T Consensus 137 l~~a~~l~~~in~~~~~L~~l~~~i 161 (552)
T COG1256 137 LSKAQTLVNQINNTYEQLTDLRKDI 161 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444433
No 124
>PHA02819 hypothetical protein; Provisional
Probab=31.02 E-value=46 Score=24.20 Aligned_cols=6 Identities=0% Similarity=-0.474 Sum_probs=2.2
Q ss_pred chhhHH
Q 047939 290 NSSLTC 295 (314)
Q Consensus 290 ~rk~~~ 295 (314)
.+.|.+
T Consensus 43 ~~~~~~ 48 (71)
T PHA02819 43 SFLRYY 48 (71)
T ss_pred ChhHHH
Confidence 333333
No 125
>PF13198 DUF4014: Protein of unknown function (DUF4014)
Probab=30.00 E-value=76 Score=23.12 Aligned_cols=13 Identities=15% Similarity=0.212 Sum_probs=8.0
Q ss_pred HHhhcchhhHHHH
Q 047939 285 KTQRSNSSLTCLL 297 (314)
Q Consensus 285 ~~qk~~rk~~~~l 297 (314)
.|.|++|+.-..+
T Consensus 8 ~Y~rrSr~~efLF 20 (72)
T PF13198_consen 8 EYPRRSRKTEFLF 20 (72)
T ss_pred HccchhHHHHHHH
Confidence 4677777765533
No 126
>PHA02844 putative transmembrane protein; Provisional
Probab=29.99 E-value=49 Score=24.30 Aligned_cols=21 Identities=14% Similarity=0.308 Sum_probs=10.6
Q ss_pred HhhcchhhHHHHHHHHHHHHH
Q 047939 286 TQRSNSSLTCLLLVIFGIVLL 306 (314)
Q Consensus 286 ~qk~~rk~~~~l~ii~~Ivl~ 306 (314)
+.++++++.-+..+|++++.+
T Consensus 38 ~~~~~~~~~~~~~~ii~i~~v 58 (75)
T PHA02844 38 VNKNNVCSSSTKIWILTIIFV 58 (75)
T ss_pred ccccccCChhHHHHHHHHHHH
Confidence 344445555566655544433
No 127
>PF07432 Hc1: Histone H1-like protein Hc1; InterPro: IPR010886 This family consists of several bacterial histone H1-like Hc1 proteins, which are found in Chlamydiae and Bacteroidetes species. Chlamydiae are prokaryotic obligate intracellular parasites that undergo a biphasic life cycle involving an infectious, extracellular form known as elementary bodies and an intracellular, replicating form termed reticulate bodies. The gene coding for Hc1 is expressed only during the late stages of the chlamydial life cycle concomitant with the reorganisation of chlamydial reticulate bodies into elementary bodies, suggesting that the Hc1 protein plays a role in the condensation of chlamydial chromatin during intracellular differentiation [].; GO: 0003677 DNA binding
Probab=29.62 E-value=2.8e+02 Score=22.33 Aligned_cols=51 Identities=24% Similarity=0.283 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhhHHHHH--HHHHHHHHHHHHH
Q 047939 104 IHKTRLHIGQLVKDTSAKLKQASETDHHAQVSADKKIAD--AKLAKDFQAVLKE 155 (314)
Q Consensus 104 I~~l~~~i~~l~~~~~~~lk~l~~~~~~~~~~r~~k~~~--~kL~~~f~~~l~~ 155 (314)
|.++..++++|+..+..++.++...+. ..+.|.|+..+ ++|..+|+....+
T Consensus 2 lKdt~~kmkeL~e~~~~D~~K~EKGNK-AAGtRaRK~sleLeKLaKefRKeSie 54 (123)
T PF07432_consen 2 LKDTFKKMKELLESFEADAEKAEKGNK-AAGTRARKASLELEKLAKEFRKESIE 54 (123)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHccch-HHHHHHHHHHHHHHHHHHHHHHHHHH
No 128
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=29.57 E-value=2.5e+02 Score=21.25 Aligned_cols=56 Identities=14% Similarity=0.328 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047939 69 AVASGIFQINTAVSTFQRLVN-TLGTPKDTPELREKIHKTRLHIGQLVKDTSAKLKQ 124 (314)
Q Consensus 69 ~i~~~I~~I~~~v~~L~~~~~-~L~t~~D~~~lr~~I~~l~~~i~~l~~~~~~~lk~ 124 (314)
.+...+.+|...+..|+..+. .+...++...+..+|..+..+-..|..++-.....
T Consensus 5 ~le~al~rL~~aid~LE~~v~~r~~~~~~~~~~e~ei~~l~~dr~rLa~eLD~~~ar 61 (89)
T PF13747_consen 5 SLEAALTRLEAAIDRLEKAVDRRLERDRKRDELEEEIQRLDADRSRLAQELDQAEAR 61 (89)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHHHHhHHHH
Confidence 567778888899999988776 46555555667777776666655555555444433
No 129
>PF15106 TMEM156: TMEM156 protein family
Probab=28.77 E-value=59 Score=28.88 Aligned_cols=23 Identities=22% Similarity=0.574 Sum_probs=12.9
Q ss_pred cchhhHHHHHHHHHHHHHHHHHH
Q 047939 289 SNSSLTCLLLVIFGIVLLILVVV 311 (314)
Q Consensus 289 ~~rk~~~~l~ii~~Ivl~Ivl~v 311 (314)
-+-|..|+.++++++|++|++++
T Consensus 172 CsmKITWYvLVllVfiflii~iI 194 (226)
T PF15106_consen 172 CSMKITWYVLVLLVFIFLIILII 194 (226)
T ss_pred eehhhHHHHHHHHHHHHHHHHHH
Confidence 44566676666665555554443
No 130
>PRK02119 hypothetical protein; Provisional
Probab=28.54 E-value=2.3e+02 Score=20.57 Aligned_cols=45 Identities=18% Similarity=0.265 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhHHHHHHHHHH
Q 047939 231 IQEIQQQIGEVNEVFKDLAVLVHEQGTIIDDIGSHIENSQVATAQ 275 (314)
Q Consensus 231 I~~Ie~~I~eLneiF~dLa~lV~eQGe~ID~Ie~Nve~a~~~v~~ 275 (314)
|..||.-+.-.-..-.+|+..|.+|...||.....+......+..
T Consensus 11 i~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~ 55 (73)
T PRK02119 11 IAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKD 55 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 666666666666666677777777777777777666666554443
No 131
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=27.88 E-value=2.3e+02 Score=20.31 Aligned_cols=29 Identities=31% Similarity=0.538 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047939 225 EERELGIQEIQQQIGEVNEVFKDLAVLVH 253 (314)
Q Consensus 225 ~eR~~eI~~Ie~~I~eLneiF~dLa~lV~ 253 (314)
.+|...|++++..+.|..++..+|..-|.
T Consensus 21 ~~r~~~i~~~e~~l~ea~~~l~qMe~E~~ 49 (79)
T PF05008_consen 21 EQRKSLIREIERDLDEAEELLKQMELEVR 49 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 69999999999999999999999998886
No 132
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=27.88 E-value=2.7e+02 Score=21.08 Aligned_cols=59 Identities=17% Similarity=0.255 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHH----HcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 047939 71 ASGIFQINTAVSTFQRLVN----TLGTPKDTPELREKIHKTRLHIGQLVKDTSAKLKQASETD 129 (314)
Q Consensus 71 ~~~I~~I~~~v~~L~~~~~----~L~t~~D~~~lr~~I~~l~~~i~~l~~~~~~~lk~l~~~~ 129 (314)
...|..+...++..++.+. .|-+..=+++-|..++.-...++...+.-...|+.|...+
T Consensus 4 ~~eId~lEekl~~cr~~le~ve~rL~~~eLs~e~R~~lE~E~~~l~~~l~~~E~eL~~LrkEN 66 (85)
T PF15188_consen 4 AKEIDGLEEKLAQCRRRLEAVESRLRRRELSPEARRSLEKELNELKEKLENNEKELKLLRKEN 66 (85)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHHHHHHhhccHHHHHHHHHhh
Confidence 3344444444444443332 3444455566677887777777888888888888886654
No 133
>PHA03395 p10 fibrous body protein; Provisional
Probab=27.77 E-value=2.8e+02 Score=21.13 Aligned_cols=49 Identities=16% Similarity=0.257 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCCCHHHHHHHHHHHHHHHHH
Q 047939 66 STQAVASGIFQINTAVSTFQRLVNTLG-TPKDTPELREKIHKTRLHIGQL 114 (314)
Q Consensus 66 ~~~~i~~~I~~I~~~v~~L~~~~~~L~-t~~D~~~lr~~I~~l~~~i~~l 114 (314)
..-.|...|.....++..|+..+..+. ...|-.++.++|+.+....+.+
T Consensus 5 ILl~Ir~dIkavd~KVdalQ~~V~~l~~nlpdv~~l~~kLdaq~~~Ltti 54 (87)
T PHA03395 5 ILLLIRQDIKAVSDKVDALQAAVDDVRANLPDVTEINEKLDAQSASLDTI 54 (87)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCcHHHHHHHHHhHHHHHHHH
Confidence 445678888888888888888887664 3456677888888876555433
No 134
>PF11593 Med3: Mediator complex subunit 3 fungal; InterPro: IPR020998 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents the subunit Med3, which is a physical target for Cyc8-Tup1, a yeast transcriptional co-repressor []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=27.63 E-value=3.5e+02 Score=26.23 Aligned_cols=21 Identities=33% Similarity=0.379 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 047939 142 DAKLAKDFQAVLKEFQKAQRL 162 (314)
Q Consensus 142 ~~kL~~~f~~~l~~Fq~~Q~~ 162 (314)
+-.|..+|+.+..+|+++|=-
T Consensus 74 lleL~~~lQ~lS~df~~LqPL 94 (379)
T PF11593_consen 74 LLELYNKLQELSSDFQKLQPL 94 (379)
T ss_pred HHHHHHHHHHHHHHHHHhchH
Confidence 345778888888888888644
No 135
>COG0840 Tar Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms]
Probab=27.41 E-value=4.6e+02 Score=24.77 Aligned_cols=53 Identities=26% Similarity=0.423 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhHHHHHHHHHHHH
Q 047939 225 EERELGIQEIQQQIGEVNEVFKDLAVLVHEQGTIIDDIGSHIENSQVATAQGK 277 (314)
Q Consensus 225 ~eR~~eI~~Ie~~I~eLneiF~dLa~lV~eQGe~ID~Ie~Nve~a~~~v~~a~ 277 (314)
.+=...+..|...+.+++++...++.-..+|...++.|..+++.....++...
T Consensus 327 ~~~~~~~~~i~~~i~~i~~~~~~i~~~~~e~~~~~~~i~~~i~~i~~~~~~~~ 379 (408)
T COG0840 327 EETGSSLGEIAAAIEEVSQLISEIAAATEEQTAVLEEINASIEELDDVTQENA 379 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344589999999999999999999999999999999999998888877776
No 136
>PRK13673 hypothetical protein; Provisional
Probab=27.04 E-value=1.5e+02 Score=23.90 Aligned_cols=36 Identities=11% Similarity=0.187 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHH
Q 047939 275 QGKSQLVKAAKTQRSNSSLTCLLLVIFGIVLLILVV 310 (314)
Q Consensus 275 ~a~~~L~~A~~~qk~~rk~~~~l~ii~~Ivl~Ivl~ 310 (314)
=|.-|..-+++.+.+..+..|+.+++++++.+.+.+
T Consensus 74 Ig~mEm~l~r~kk~k~~~~~~~~~ii~lvlti~lG~ 109 (118)
T PRK13673 74 IGLMEMSLAKRKKGKPTGGFWWIFIIVLVLTILLGL 109 (118)
T ss_pred HHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHHHHH
Confidence 345566666666655555566666665555544443
No 137
>PF02167 Cytochrom_C1: Cytochrome C1 family; InterPro: IPR002326 Cytochrome bc1 complex (ubiquinol:ferricytochrome c oxidoreductase) is found in mitochondria, photosynthetic bacteria and other prokaryotes. It is minimally composed of three subunits: cytochrome b, carrying a low- and a high-potential haem group; cytochrome c1 (cyt c1); and a high-potential Rieske iron-sulphur protein. The general function of the complex is electron transfer between two mobile redox carriers, ubiquinol and cytochrome c; the electron transfer is coupled with proton translocation across the membrane, thus generating proton-motive force in the form of an electrochemical potential that can drive ATP synthesis. In its structure and functions, the cytochrome bc1 complex bears extensive analogy to the cytochrome b6f complex of chloroplasts and cyanobacteria; cyt c1 plays an analogous role to cytochrome f, in spite of their different structures [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding; PDB: 1P84_D 2IBZ_D 1EZV_D 3CX5_O 3CXH_O 1KB9_D 1KYO_D 1ZRT_Q 2CA4_B 2C9X_B ....
Probab=26.61 E-value=1.6e+02 Score=26.36 Aligned_cols=42 Identities=17% Similarity=0.158 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHH
Q 047939 268 NSQVATAQGKSQLVKAAKTQRSNSSLTCLLLVIFGIVLLILV 309 (314)
Q Consensus 268 ~a~~~v~~a~~~L~~A~~~qk~~rk~~~~l~ii~~Ivl~Ivl 309 (314)
++...++.-..-|..|.+-.+..||++-+-++++++|+++++
T Consensus 167 t~~q~a~DVv~FL~w~aeP~~~~R~~~G~~vl~fL~il~~l~ 208 (219)
T PF02167_consen 167 TVDQMAKDVVNFLAWAAEPEKDERKRMGLKVLGFLLILTVLA 208 (219)
T ss_dssp -HHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445566888888888888876555555544444433
No 138
>PF03127 GAT: GAT domain; InterPro: IPR004152 The GAT domain is responsible for binding of GGA proteins to several members of the ARF family including ARF1 [] and ARF3. The GAT domain stabilises membrane bound ARF1 in its GTP bound state, by interfering with GAP proteins [].; GO: 0006886 intracellular protein transport, 0005622 intracellular; PDB: 1YD8_H 1WR6_C 1WRD_A 1O3X_A 1J2J_B 1NWM_X 1X79_A 1OXZ_A 1NAF_A.
Probab=26.61 E-value=2.9e+02 Score=21.02 Aligned_cols=87 Identities=7% Similarity=0.108 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhhHHHHHHHH
Q 047939 66 STQAVASGIFQINTAVSTFQRLVNTLGTPKDTPELREKIHKTRLHIGQLVKDTSAKLKQASETDHHAQVSADKKIADAKL 145 (314)
Q Consensus 66 ~~~~i~~~I~~I~~~v~~L~~~~~~L~t~~D~~~lr~~I~~l~~~i~~l~~~~~~~lk~l~~~~~~~~~~r~~k~~~~kL 145 (314)
........|..++.++.-|..++...........-.+-+..+... ++..+.+|..+-.... .+ . --...-.+
T Consensus 5 ~~~k~~~~l~~v~~~~~lL~emL~~~~~~~~~~~~~el~~eL~~~----ck~~r~~i~~li~~~~--de-e-~l~~lL~~ 76 (100)
T PF03127_consen 5 QVSKRRSELEKVKNNAKLLNEMLDNYDPGEESSSDNELIQELYES----CKSMRPRIQRLIEEVE--DE-E-LLGELLQA 76 (100)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHTTTTTSTHHHHHHHHHHHHH----HHHHHHHHHHHHHTST--TC-H-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHH----HHHHHHHHHHHHhhcC--cH-H-HHHHHHHH
Confidence 445677888889999998998888776544443322344444433 4444444444433321 11 1 22223345
Q ss_pred HHHHHHHHHHHHHHH
Q 047939 146 AKDFQAVLKEFQKAQ 160 (314)
Q Consensus 146 ~~~f~~~l~~Fq~~Q 160 (314)
.-++..++.+|..+.
T Consensus 77 ND~L~~~l~~Y~~l~ 91 (100)
T PF03127_consen 77 NDELNQALERYDRLV 91 (100)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 677888888888765
No 139
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=26.48 E-value=5.9e+02 Score=24.55 Aligned_cols=73 Identities=12% Similarity=0.270 Sum_probs=40.5
Q ss_pred CCCCHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhhccCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047939 94 PKDTPELREKIH---KTRLHIGQLVKDTSAKLKQASETDHHAQVSADKKIADAKLAKDFQAVLKEFQKAQRLAAERET 168 (314)
Q Consensus 94 ~~D~~~lr~~I~---~l~~~i~~l~~~~~~~lk~l~~~~~~~~~~r~~k~~~~kL~~~f~~~l~~Fq~~Q~~~~~r~k 168 (314)
..|..+.|..++ .+...|...+..++..|+.+...-.. ...++.+ .-.-|..+|...++.|+..+.+..+-..
T Consensus 212 ~~d~kDWR~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~-~lekI~s-REk~iN~qle~l~~eYr~~~~~ls~~~~ 287 (359)
T PF10498_consen 212 RADAKDWRSHLEQMKQHKKSIESALPETKSQLDKLQQDISK-TLEKIES-REKYINNQLEPLIQEYRSAQDELSEVQE 287 (359)
T ss_pred cCCcchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-HHHHHHH-HHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 345566775554 44556667777777777777554210 1111111 1233566777777777777776665433
No 140
>PHA03046 Hypothetical protein; Provisional
Probab=25.75 E-value=3.1e+02 Score=22.52 Aligned_cols=53 Identities=15% Similarity=0.248 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhHHHHHHHHH
Q 047939 222 AIIEERELGIQEIQQQIGEVNEVFKDLAVLVHEQGTIIDDIGSHIENSQVATA 274 (314)
Q Consensus 222 ~~i~eR~~eI~~Ie~~I~eLneiF~dLa~lV~eQGe~ID~Ie~Nve~a~~~v~ 274 (314)
..|..-.-+|+.+-.-+.-|-.+|+....--..=+..|+++|.+.+....++=
T Consensus 77 sFI~~d~~~iKd~vlRL~vlEK~~~~~i~~c~~~~~~i~RLE~H~ETlRk~Ml 129 (142)
T PHA03046 77 SFIHKDEMDIKDFVLRLLVLEKLFQLSIKRCKSLNNIIKRLENHTETVRKNMI 129 (142)
T ss_pred hccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666788888888888899999888888999999999999988766553
No 141
>PF11837 DUF3357: Domain of unknown function (DUF3357); InterPro: IPR021792 This entry represents the N-terminal domain of beta-fructofuranosidase, whcih is involved in the hydrolysis of terminal non-reducing beta-D-fructofuranoside residues in beta-D-fructofuranosides. ; GO: 0004564 beta-fructofuranosidase activity, 0004575 sucrose alpha-glucosidase activity; PDB: 3UGG_A 3UGH_B 3UGF_B.
Probab=25.51 E-value=23 Score=27.84 Aligned_cols=11 Identities=27% Similarity=0.567 Sum_probs=0.0
Q ss_pred hhhHHHHHHHH
Q 047939 291 SSLTCLLLVIF 301 (314)
Q Consensus 291 rk~~~~l~ii~ 301 (314)
|..+|++++++
T Consensus 26 R~~k~~~~i~~ 36 (106)
T PF11837_consen 26 RPLKCLAAIFS 36 (106)
T ss_dssp -----------
T ss_pred CcchhHHHHHH
Confidence 33356555544
No 142
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=25.32 E-value=5e+02 Score=23.35 Aligned_cols=28 Identities=14% Similarity=0.188 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 047939 142 DAKLAKDFQAVLKEFQKAQRLAAERETA 169 (314)
Q Consensus 142 ~~kL~~~f~~~l~~Fq~~Q~~~~~r~k~ 169 (314)
..+...........|..+-....+..+.
T Consensus 76 r~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 76 RNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555666665555543333
No 143
>PHA02675 ORF104 fusion protein; Provisional
Probab=25.15 E-value=3e+02 Score=20.74 Aligned_cols=33 Identities=21% Similarity=0.393 Sum_probs=24.3
Q ss_pred HHHHHHHHHHhhcchhHHHHHhhHHHHHHHHHH
Q 047939 243 EVFKDLAVLVHEQGTIIDDIGSHIENSQVATAQ 275 (314)
Q Consensus 243 eiF~dLa~lV~eQGe~ID~Ie~Nve~a~~~v~~ 275 (314)
++|+.+..--..=++.|++.|.+.+....++=.
T Consensus 44 k~~~~i~~cC~~~~~~L~RLE~H~ETLRk~Ml~ 76 (90)
T PHA02675 44 DSYKTITDCCRETGARLDRLERHLETLREALLK 76 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666677788899999988887665543
No 144
>PF08653 DASH_Dam1: DASH complex subunit Dam1; InterPro: IPR013962 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=24.99 E-value=70 Score=22.40 Aligned_cols=31 Identities=3% Similarity=0.172 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 047939 64 QDSTQAVASGIFQINTAVSTFQRLVNTLGTP 94 (314)
Q Consensus 64 ~~~~~~i~~~I~~I~~~v~~L~~~~~~L~t~ 94 (314)
.+...++++.+..+..++..|+..++.|.++
T Consensus 4 ~~~f~eL~D~~~~L~~n~~~L~~ihesL~~F 34 (58)
T PF08653_consen 4 EPQFAELSDSMETLDKNMEQLNQIHESLSDF 34 (58)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466788888888899999998888887654
No 145
>PF03310 Cauli_DNA-bind: Caulimovirus DNA-binding protein; InterPro: IPR004986 The gene III product (P15) of cauliflower mosaic virus (CaMV) is a DNA binding protein in which the DNA binding activity is located on its C-terminal part. A family of related proteins is expressed by other members of the Caulimoviridae.; GO: 0003677 DNA binding; PDB: 3F6N_A 3K4T_D.
Probab=24.58 E-value=2.8e+02 Score=22.48 Aligned_cols=10 Identities=30% Similarity=0.471 Sum_probs=4.1
Q ss_pred HHHHHHHHHH
Q 047939 277 KSQLVKAAKT 286 (314)
Q Consensus 277 ~~~L~~A~~~ 286 (314)
+++|..|-+.
T Consensus 60 ~Kelle~Lk~ 69 (121)
T PF03310_consen 60 NKELLEALKK 69 (121)
T ss_dssp HHHHHHHHT-
T ss_pred hHHHHHHHhc
Confidence 3444444443
No 146
>KOG2546 consensus Abl interactor ABI-1, contains SH3 domain [Signal transduction mechanisms; Cytoskeleton]
Probab=24.39 E-value=2.5e+02 Score=27.81 Aligned_cols=50 Identities=10% Similarity=0.120 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhHHHHHHHHH
Q 047939 225 EERELGIQEIQQQIGEVNEVFKDLAVLVHEQGTIIDDIGSHIENSQVATA 274 (314)
Q Consensus 225 ~eR~~eI~~Ie~~I~eLneiF~dLa~lV~eQGe~ID~Ie~Nve~a~~~v~ 274 (314)
+.|+.+.+.++.---.+|.|..+.-.|+..|+..|-..|.|+......|.
T Consensus 51 etk~~ttQslasvaYqIN~la~~~l~mL~lQ~~~L~~mEs~vn~isq~V~ 100 (483)
T KOG2546|consen 51 ETKAYTTQSLASVAYQINTLAGHALRMLDLQAPQLRYMESQVNHISQTVD 100 (483)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhe
Confidence 46777888888888999999999999999999999999999998887664
No 147
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=23.98 E-value=94 Score=25.19 Aligned_cols=17 Identities=24% Similarity=0.663 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 047939 296 LLLVIFGIVLLILVVVL 312 (314)
Q Consensus 296 ~l~ii~~Ivl~Ivl~vv 312 (314)
+.+||+++++.|+++++
T Consensus 66 i~~Ii~gv~aGvIg~Il 82 (122)
T PF01102_consen 66 IIGIIFGVMAGVIGIIL 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred eeehhHHHHHHHHHHHH
Confidence 56677777776666654
No 148
>KOG0862 consensus Synaptobrevin/VAMP-like protein SEC22 [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.87 E-value=3.8e+02 Score=23.93 Aligned_cols=84 Identities=13% Similarity=0.200 Sum_probs=0.0
Q ss_pred HHHHHHHHHHH---HHHHHHHHHHHhhcchhHHHHHhhH--HHHHHHHHHHHHHHHHHH-HHhhcchhhHHHHHHHH--H
Q 047939 231 IQEIQQQIGEV---NEVFKDLAVLVHEQGTIIDDIGSHI--ENSQVATAQGKSQLVKAA-KTQRSNSSLTCLLLVIF--G 302 (314)
Q Consensus 231 I~~Ie~~I~eL---neiF~dLa~lV~eQGe~ID~Ie~Nv--e~a~~~v~~a~~~L~~A~-~~qk~~rk~~~~l~ii~--~ 302 (314)
|+++.+.-.+- ..+-+..+.+...|+-|..+||+=+ ..+.+....-...+..-. .|++.+.....-.++.- .
T Consensus 120 IQk~Kk~ynd~r~~~n~~~~n~el~~v~~im~~niedvl~rg~~l~~l~~~~s~l~~~s~~y~~~a~~in~~sl~~~~aa 199 (216)
T KOG0862|consen 120 IQKTKKRYNDTRSQRNLLKLNQELQDVQRIMVENLEDVLQRGEVLNALSSMASELSSESRKYPKTAKGINRKSLIRKYAA 199 (216)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhchHHHhhhhhhhcccHHHHhhHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHhC
Q 047939 303 IVLLILVVVLAA 314 (314)
Q Consensus 303 Ivl~Ivl~vv~~ 314 (314)
++++.++++++|
T Consensus 200 ~~~~~~~l~f~~ 211 (216)
T KOG0862|consen 200 YVVFFVLLLFYV 211 (216)
T ss_pred HHHHHHHHHHHH
No 149
>PRK13865 type IV secretion system protein VirB8; Provisional
Probab=23.80 E-value=2.6e+02 Score=25.14 Aligned_cols=7 Identities=14% Similarity=-0.007 Sum_probs=2.7
Q ss_pred cchhhHH
Q 047939 289 SNSSLTC 295 (314)
Q Consensus 289 ~~rk~~~ 295 (314)
+++|..|
T Consensus 35 rs~k~aw 41 (229)
T PRK13865 35 RLSRVLA 41 (229)
T ss_pred HHHHHHH
Confidence 3344334
No 150
>PRK04654 sec-independent translocase; Provisional
Probab=23.53 E-value=4.1e+02 Score=23.70 Aligned_cols=61 Identities=5% Similarity=0.062 Sum_probs=35.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047939 62 GKQDSTQAVASGIFQINTAVSTFQRLVNTLGTPKDTPELREKIHKTRLHIGQLVKDTSAKLKQA 125 (314)
Q Consensus 62 ~f~~~~~~i~~~I~~I~~~v~~L~~~~~~L~t~~D~~~lr~~I~~l~~~i~~l~~~~~~~lk~l 125 (314)
........+..++.+++..++.++.-...- -+..++++.++.....+++....+++.+.++
T Consensus 24 rLPe~aRtlGk~irk~R~~~~~vk~El~~E---l~~~ELrk~l~~~~~~i~~~~~~lk~~~~el 84 (214)
T PRK04654 24 RLPKAARFAGLWVRRARMQWDSVKQELERE---LEAEELKRSLQDVQASLREAEDQLRNTQQQV 84 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457788888888888887766666544421 1124566666555555554444444444443
No 151
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=23.39 E-value=5.4e+02 Score=23.01 Aligned_cols=61 Identities=20% Similarity=0.286 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047939 100 LREKIHKTRLHIGQLVKDTSAKLKQASETDHHAQVSADKKIADAKLAKDFQAVLKEFQKAQRLA 163 (314)
Q Consensus 100 lr~~I~~l~~~i~~l~~~~~~~lk~l~~~~~~~~~~r~~k~~~~kL~~~f~~~l~~Fq~~Q~~~ 163 (314)
+.++.+....+...+-++++..-+.+..... ..-.-+-|.+.+.+.+-.++.+|++.|.+.
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~---~~~al~Kq~e~~~~EydrLlee~~~Lq~~i 209 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQK---KVDALKKQSEGLQDEYDRLLEEYSKLQEQI 209 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 4555666666666666666666555543321 111223334455555555555555555543
No 152
>PRK10573 type IV pilin biogenesis protein; Provisional
Probab=23.36 E-value=2.9e+02 Score=26.55 Aligned_cols=15 Identities=20% Similarity=0.315 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHH
Q 047939 234 IQQQIGEVNEVFKDL 248 (314)
Q Consensus 234 Ie~~I~eLneiF~dL 248 (314)
+...+.+...+|-++
T Consensus 111 ls~al~~~~~~fp~~ 125 (399)
T PRK10573 111 FSEALLQWPQVFPPL 125 (399)
T ss_pred HHHHHHhCcCcCCHH
Confidence 444444444444444
No 153
>PF05713 MobC: Bacterial mobilisation protein (MobC); InterPro: IPR008687 This family consists of several bacterial MobC-like, mobilisation proteins. MobC proteins belong to the group of relaxases. Together with MobA and MobB they bind to a single cis-active site of a mobilising plasmid, the origin of transfer (oriT) region []. The absence of MobC has several different effects on oriT DNA. Site- and strand-specific nicking by MobA protein is severely reduced, accounting for the lower frequency of mobilisation. The localised DNA strand separation required for this nicking is less affected, but becomes more sensitive to the level of active DNA gyrase in the cell. In addition, strand separation is not efficiently extended through the region containing the nick site. These effects suggest a model in which MobC acts as a molecular wedge for the relaxosome-induced melting of oriT DNA. The effect of MobC on strand separation may be partially complemented by the helical distortion induced by supercoiling. However, MobC extends the melted region through the nick site, thus providing the single-stranded substrate required for cleavage by MobA [].
Probab=23.19 E-value=2.2e+02 Score=18.54 Aligned_cols=19 Identities=11% Similarity=0.256 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 047939 72 SGIFQINTAVSTFQRLVNT 90 (314)
Q Consensus 72 ~~I~~I~~~v~~L~~~~~~ 90 (314)
..+..|-.|+.+|-+..+.
T Consensus 3 reL~~ignNlNQiAk~~N~ 21 (48)
T PF05713_consen 3 RELNRIGNNLNQIAKHANS 21 (48)
T ss_pred HHHHHHhccHHHHHHHHhC
Confidence 3466677777777777776
No 154
>PHA02650 hypothetical protein; Provisional
Probab=23.10 E-value=76 Score=23.63 Aligned_cols=15 Identities=27% Similarity=-0.082 Sum_probs=6.8
Q ss_pred hhhHHHHHHHHHHHH
Q 047939 291 SSLTCLLLVIFGIVL 305 (314)
Q Consensus 291 rk~~~~l~ii~~Ivl 305 (314)
+++.-+..+|+++++
T Consensus 44 ~~~~~~~~~ii~i~~ 58 (81)
T PHA02650 44 VSWFNGQNFIFLIFS 58 (81)
T ss_pred cCCchHHHHHHHHHH
Confidence 444445555544443
No 155
>KOG2678 consensus Predicted membrane protein [Function unknown]
Probab=22.86 E-value=5.7e+02 Score=23.08 Aligned_cols=14 Identities=7% Similarity=0.245 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHH
Q 047939 234 IQQQIGEVNEVFKD 247 (314)
Q Consensus 234 Ie~~I~eLneiF~d 247 (314)
|..++.-|..-|+.
T Consensus 156 Laesll~LArslKt 169 (244)
T KOG2678|consen 156 LAESLLKLARSLKT 169 (244)
T ss_pred HHHHHHHHHHHHHH
Confidence 33344433333333
No 156
>PRK10573 type IV pilin biogenesis protein; Provisional
Probab=22.53 E-value=4.3e+02 Score=25.38 Aligned_cols=6 Identities=17% Similarity=0.257 Sum_probs=2.3
Q ss_pred HHHHHH
Q 047939 241 VNEVFK 246 (314)
Q Consensus 241 LneiF~ 246 (314)
+.+-|.
T Consensus 111 ls~al~ 116 (399)
T PRK10573 111 FSEALL 116 (399)
T ss_pred HHHHHH
Confidence 333333
No 157
>PF06143 Baculo_11_kDa: Baculovirus 11 kDa family; InterPro: IPR009313 This is a family of uncharacterised Baculovirus proteins that are all about 11 kDa in size.
Probab=22.35 E-value=1.9e+02 Score=21.81 Aligned_cols=16 Identities=50% Similarity=0.854 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 047939 295 CLLLVIFGIVLLILVV 310 (314)
Q Consensus 295 ~~l~ii~~Ivl~Ivl~ 310 (314)
||++++++++++|+++
T Consensus 41 c~~lVfVii~lFi~ll 56 (84)
T PF06143_consen 41 CCFLVFVIIVLFILLL 56 (84)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3343333444444433
No 158
>PF06789 UPF0258: Uncharacterised protein family (UPF0258); InterPro: IPR009626 This is a group of proteins of unknown function.
Probab=22.25 E-value=22 Score=29.92 Aligned_cols=11 Identities=9% Similarity=0.033 Sum_probs=5.0
Q ss_pred HHHHHhhcchh
Q 047939 282 KAAKTQRSNSS 292 (314)
Q Consensus 282 ~A~~~qk~~rk 292 (314)
.|...+.+..|
T Consensus 124 Eae~kr~K~Ck 134 (159)
T PF06789_consen 124 EAELKRSKVCK 134 (159)
T ss_pred HHHHHHHHHHH
Confidence 34444455444
No 159
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=22.09 E-value=2.8e+02 Score=19.27 Aligned_cols=28 Identities=14% Similarity=0.308 Sum_probs=14.1
Q ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 047939 258 IIDDIGSHIENSQVATAQGKSQLVKAAK 285 (314)
Q Consensus 258 ~ID~Ie~Nve~a~~~v~~a~~~L~~A~~ 285 (314)
.||.+...|......+..|..+-..|..
T Consensus 18 kvdqLs~dv~~lr~~v~~ak~EAaRAN~ 45 (56)
T PF04728_consen 18 KVDQLSSDVNALRADVQAAKEEAARANQ 45 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555544443
No 160
>PF14992 TMCO5: TMCO5 family
Probab=21.90 E-value=6.5e+02 Score=23.43 Aligned_cols=52 Identities=12% Similarity=0.145 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhHHHHHHHHHH
Q 047939 224 IEERELGIQEIQQQIGEVNEVFKDLAVLVHEQGTIIDDIGSHIENSQVATAQ 275 (314)
Q Consensus 224 i~eR~~eI~~Ie~~I~eLneiF~dLa~lV~eQGe~ID~Ie~Nve~a~~~v~~ 275 (314)
....+++|.+++.+...++++=.|=+.-++.=.+.+.+||.-.+...-+.+-
T Consensus 125 ~~~qE~ei~kve~d~~~v~~l~eDq~~~i~klkE~L~rmE~ekE~~lLe~el 176 (280)
T PF14992_consen 125 CASQEKEIAKVEDDYQQVHQLCEDQANEIKKLKEKLRRMEEEKEMLLLEKEL 176 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677888888888888888888877777677778887766655544443
No 161
>PRK15396 murein lipoprotein; Provisional
Probab=21.72 E-value=3.4e+02 Score=20.13 Aligned_cols=29 Identities=10% Similarity=0.279 Sum_probs=15.9
Q ss_pred hhHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 047939 257 TIIDDIGSHIENSQVATAQGKSQLVKAAK 285 (314)
Q Consensus 257 e~ID~Ie~Nve~a~~~v~~a~~~L~~A~~ 285 (314)
..+|.+...+..+...+..|..|-.+|.+
T Consensus 39 ~kvdql~~dv~~~~~~~~~a~~eA~raN~ 67 (78)
T PRK15396 39 AKVDQLSNDVNAMRSDVQAAKDDAARANQ 67 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555544
No 162
>KOG4559 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.71 E-value=4e+02 Score=20.86 Aligned_cols=40 Identities=23% Similarity=0.442 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhcchhHHHHHhhHHH
Q 047939 225 EERELGIQEIQQ----QIGEVNEVFKDLAVLVHEQGTIIDDIGSHIEN 268 (314)
Q Consensus 225 ~eR~~eI~~Ie~----~I~eLneiF~dLa~lV~eQGe~ID~Ie~Nve~ 268 (314)
..|+.+++.|.. ...+||.=|..|+-|.. +||.|++.++.
T Consensus 64 aakY~DMk~iAEkla~k~deLn~KfenL~P~lq----QIDaiddst~k 107 (120)
T KOG4559|consen 64 AAKYKDMKQIAEKLAGKLDELNLKFENLAPMLQ----QIDAIDDSTDK 107 (120)
T ss_pred HHHHHHHHHHHHHHccchHHHHHHHHHHHHHHH----HHHHHhhHHHH
Confidence 467888887765 45799999999999986 46766665544
No 163
>PHA03240 envelope glycoprotein M; Provisional
Probab=21.63 E-value=65 Score=28.73 Aligned_cols=12 Identities=33% Similarity=0.631 Sum_probs=7.8
Q ss_pred hhhhhhcc--cccc
Q 047939 10 PIILAEFS--CIPV 21 (314)
Q Consensus 10 ~~~~~~~~--~~~~ 21 (314)
.+|+-+|| ||||
T Consensus 20 a~~~y~~seACiev 33 (258)
T PHA03240 20 AMFFYEFSEACEEH 33 (258)
T ss_pred HHHHHhhhhhceec
Confidence 35666775 8876
No 164
>PF10749 DUF2534: Protein of unknown function (DUF2534); InterPro: IPR019685 This entry represents proteins with unknown function, and appear to be restricted to Enterobacteriaceae.
Probab=21.39 E-value=1.2e+02 Score=22.77 Aligned_cols=11 Identities=27% Similarity=0.492 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q 047939 297 LLVIFGIVLLI 307 (314)
Q Consensus 297 l~ii~~Ivl~I 307 (314)
++++++|++.|
T Consensus 19 l~~vfiia~~V 29 (85)
T PF10749_consen 19 LAIVFIIAATV 29 (85)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 165
>TIGR02833 spore_III_AB stage III sporulation protein AB. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage III sporulation protein AB.
Probab=21.22 E-value=2.7e+02 Score=23.66 Aligned_cols=45 Identities=13% Similarity=0.194 Sum_probs=22.1
Q ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHH
Q 047939 258 IIDDIGSHIENSQVATAQGKSQLVKAAKTQRSNSSLTCLLLVIFGIVL 305 (314)
Q Consensus 258 ~ID~Ie~Nve~a~~~v~~a~~~L~~A~~~qk~~rk~~~~l~ii~~Ivl 305 (314)
++..|+--+++.....+.|.. .+.++.|-+|..-+++.+.++|++
T Consensus 125 Q~k~i~L~~~~L~~~~~~a~~---~~~k~~Kmy~~LGvl~Gl~lvIll 169 (170)
T TIGR02833 125 QQKHINLTLEHLERQLTEAED---EQKKNEKMYRYLGVLVGLMIVLLL 169 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHhcccHHHHHHHHHHHHHHHHh
Confidence 333444444444444444433 334456666666665555555544
No 166
>PF03597 CcoS: Cytochrome oxidase maturation protein cbb3-type; InterPro: IPR004714 Cytochrome cbb3 oxidases are found almost exclusively in Proteobacteria, and represent a distinctive class of proton-pumping respiratory haem-copper oxidases (HCO) that lack many of the key structural features that contribute to the reaction cycle of the intensely studied mitochondrial cytochrome c oxidase (CcO). Expression of cytochrome cbb3 oxidase allows human pathogens to colonise anoxic tissues and agronomically important diazotrophs to sustain nitrogen fixation []. Genes encoding a cytochrome cbb3 oxidase were initially designated fixNOQP (ccoNOQP), the ccoNOQP operon is always found close to a second gene cluster, known as fixGHIS (ccoGHIS) whose expression is necessary for the assembly of a functional cbb3 oxidase. On the basis of their derived amino acid sequences each of the four proteins encoded by the ccoGHIS operon are thought to be membrane-bound. It has been suggested that they may function in concert as a multi-subunit complex, possibly playing a role in the uptake and metabolism of copper required for the assembly of the binuclear centre of cytochrome cbb3 oxidase.
Probab=21.03 E-value=1.1e+02 Score=20.15 Aligned_cols=15 Identities=20% Similarity=0.075 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHhC
Q 047939 300 IFGIVLLILVVVLAA 314 (314)
Q Consensus 300 i~~Ivl~Ivl~vv~~ 314 (314)
+.++++++.+.+.+|
T Consensus 9 ~sl~l~~~~l~~f~W 23 (45)
T PF03597_consen 9 VSLILGLIALAAFLW 23 (45)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444455555554
No 167
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=20.87 E-value=4.5e+02 Score=21.14 Aligned_cols=77 Identities=13% Similarity=0.137 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----ccCC-CchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 047939 99 ELREKIHKTRLHIGQLVKDTSAKLKQASE-----TDHH-AQVSADKKIADAKLAKDFQAVLKEFQKAQRLAAERETAYTP 172 (314)
Q Consensus 99 ~lr~~I~~l~~~i~~l~~~~~~~lk~l~~-----~~~~-~~~~r~~k~~~~kL~~~f~~~l~~Fq~~Q~~~~~r~k~~~~ 172 (314)
.+..++..+...++..++.+......... ..+. ......-......+-.+|+.+=.+|...++....|. +..
T Consensus 48 ~~~~~~~~~~~~ik~~lk~l~~~~~~~~~~~~s~~~r~~~~q~~~L~~~f~~~m~~fq~~Q~~~~~~~k~~i~Rq--~~i 125 (151)
T cd00179 48 SLVQEIKKLAKEIKGKLKELEESNEQNEALNGSSVDRIRKTQHSGLSKKFVEVMTEFNKAQRKYRERYKERIQRQ--LEI 125 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH
Confidence 34556666666666666666554433210 0000 000111222345666888888888887776666544 333
Q ss_pred CCCCC
Q 047939 173 FVPQA 177 (314)
Q Consensus 173 ~~~~~ 177 (314)
+.|.+
T Consensus 126 ~~~~~ 130 (151)
T cd00179 126 TGGEA 130 (151)
T ss_pred cCCCC
Confidence 44443
No 168
>PRK15041 methyl-accepting chemotaxis protein I; Provisional
Probab=20.70 E-value=8.8e+02 Score=24.48 Aligned_cols=54 Identities=22% Similarity=0.348 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhHHHHHHHHHH
Q 047939 222 AIIEERELGIQEIQQQIGEVNEVFKDLAVLVHEQGTIIDDIGSHIENSQVATAQ 275 (314)
Q Consensus 222 ~~i~eR~~eI~~Ie~~I~eLneiF~dLa~lV~eQGe~ID~Ie~Nve~a~~~v~~ 275 (314)
..+++=.+.+.+|...+.++.+++.+++.-+.+|...++.|..+++....-+++
T Consensus 433 ~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~eq~~~~~~i~~~i~~i~~~~~~ 486 (554)
T PRK15041 433 TLVESAGETMAEIVSAVTRVTDIMGEIASASDEQSRGIDQVGLAVAEMDRVTQQ 486 (554)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666678999999999999999999999999999999999998887776665
No 169
>PF05624 LSR: Lipolysis stimulated receptor (LSR); InterPro: IPR008664 This domain consists of mammalian LISCH7 protein homologues. LISCH7 is a liver-specific BHLH-ZIP transcription factor.
Probab=20.53 E-value=48 Score=22.04 Aligned_cols=18 Identities=33% Similarity=0.715 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHhC
Q 047939 297 LLVIFGIVLLILVVVLAA 314 (314)
Q Consensus 297 l~ii~~Ivl~Ivl~vv~~ 314 (314)
+++++..+++++++-|-|
T Consensus 6 ~~iilg~~ll~~LigiCw 23 (49)
T PF05624_consen 6 VLIILGALLLLLLIGICW 23 (49)
T ss_pred eHHHHHHHHHHHHHHHHH
Confidence 455555555555555544
No 170
>PRK08307 stage III sporulation protein SpoAB; Provisional
Probab=20.53 E-value=2.7e+02 Score=23.72 Aligned_cols=44 Identities=16% Similarity=0.188 Sum_probs=21.0
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHH
Q 047939 259 IDDIGSHIENSQVATAQGKSQLVKAAKTQRSNSSLTCLLLVIFGIVL 305 (314)
Q Consensus 259 ID~Ie~Nve~a~~~v~~a~~~L~~A~~~qk~~rk~~~~l~ii~~Ivl 305 (314)
+..|+--+++.....+.|.. .+.++.|-+|..-+++.+.++|++
T Consensus 127 ~k~i~L~~e~L~~~~~~a~~---~~~k~~Kmy~~LGvl~Gl~lvIlL 170 (171)
T PRK08307 127 QKHIRLALEHLEREEEEAEE---EQKKNEKMYKYLGFLAGLLIVILL 170 (171)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHhCCcHHHHHHHHHHHHHHHHh
Confidence 33333333333444444432 334456666666665555555544
No 171
>TIGR00847 ccoS cytochrome oxidase maturation protein, cbb3-type. CcoS from Rhodobacter capsulatus has been shown essential for incorporation of redox-active prosthetic groups (heme, Cu) into cytochrome cbb(3) oxidase. FixS of Bradyrhizobium japonicum appears to have the same function. Members of this family are found so far in organisms with a cbb3-type cytochrome oxidase, including Neisseria meningitidis, Helicobacter pylori, Campylobacter jejuni, Caulobacter crescentus, Bradyrhizobium japonicum, and Rhodobacter capsulatus.
Probab=20.45 E-value=1.2e+02 Score=20.59 Aligned_cols=13 Identities=8% Similarity=-0.187 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHhC
Q 047939 302 GIVLLILVVVLAA 314 (314)
Q Consensus 302 ~Ivl~Ivl~vv~~ 314 (314)
++++++.+++.+|
T Consensus 12 l~l~~~~l~~f~W 24 (51)
T TIGR00847 12 LLLGGVGLVAFLW 24 (51)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444445554
No 172
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=20.25 E-value=4.4e+02 Score=26.03 Aligned_cols=31 Identities=3% Similarity=0.195 Sum_probs=21.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 047939 62 GKQDSTQAVASGIFQINTAVSTFQRLVNTLG 92 (314)
Q Consensus 62 ~f~~~~~~i~~~I~~I~~~v~~L~~~~~~L~ 92 (314)
+.....+.+...+.++...+.+|++.+..+.
T Consensus 331 ~l~~~~~~l~~~~~~~~~~l~~l~~~l~~l~ 361 (451)
T PF03961_consen 331 ELKEKLEELEEELEELKEELEKLKKNLKKLK 361 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3456667777777777777777777766543
No 173
>PF01105 EMP24_GP25L: emp24/gp25L/p24 family/GOLD; InterPro: IPR009038 The GOLD (for Golgi dynamics) domain is a protein module found in several eukaryotic Golgi and lipid-traffic proteins. It is typically between 90 and 150 amino acids long. Most of the size difference observed in the GOLD-domain superfamily is traceable to a single large low-complexity insert that is seen in some versions of the domain. With the exception of the p24 proteins, which have a simple architecture with the GOLD domain as their only globular domain, all other GOLD-domain proteins contain additional conserved globular domains. In these proteins, the GOLD domain co-occurs with lipid-, sterol- or fatty acid-binding domains such as PH, CRAL-TRIO, FYVE oxysterol binding- and acyl CoA-binding domains, suggesting that these proteins may interact with membranes. The GOLD domain can also be found associated with a RUN domain, which may have a role in the interaction of various proteins with cytoskeletal filaments. The GOLD domain is predicted to mediate diverse protein-protein interactions []. A secondary structure prediction for the GOLD domain reveals that it is likely to adopt a compact all-beta-fold structure with six to seven strands. Most of the sequence conservation is centred on the hydrophobic cores that support these predicted strands. The predicted secondary-structure elements and the size of the conserved core of the domain suggests that it may form a beta- sandwich fold with the strands arranged in two beta sheets stacked on each other []. Some proteins known to contain a GOLD domain are listed below: Eukaryotic proteins of the p24 family. Animal Sec14-like proteins. They are involved in secretion. Human Golgi resident protein GCP60. It interacts with the Golgi integral membrane protein Giantin. Yeast oxysterol-binding protein homologue 3 (OSH3). ; GO: 0006810 transport, 0016021 integral to membrane; PDB: 1P23_A 1M23_A.
Probab=20.19 E-value=34 Score=28.38 Aligned_cols=15 Identities=0% Similarity=0.279 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHH
Q 047939 228 ELGIQEIQQQIGEVN 242 (314)
Q Consensus 228 ~~eI~~Ie~~I~eLn 242 (314)
.+++..++..+..|.
T Consensus 111 ~~~~~~~~~~l~~l~ 125 (183)
T PF01105_consen 111 KEHLDPLEESLEKLE 125 (183)
T ss_dssp ---------------
T ss_pred hhhhhhhHHHHHHHH
Confidence 344555555444433
Done!