Query 047939
Match_columns 314
No_of_seqs 175 out of 1272
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 07:49:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047939.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047939hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dn1_B Syntaxin 1A, syntaxin b 100.0 1.1E-35 3.7E-40 271.9 10.6 226 59-296 29-267 (267)
2 2xhe_B Syntaxin1; exocytosis, 100.0 5.7E-32 1.9E-36 248.9 12.9 217 60-291 43-279 (279)
3 3hd7_B Syntaxin-1A; membrane p 100.0 2.5E-28 8.5E-33 193.5 13.1 91 222-312 14-104 (109)
4 1jth_B Syntaxin 1A; coiled-coi 99.9 2.9E-25 1E-29 165.2 9.1 74 223-296 4-77 (77)
5 1fio_A SSO1 protein; four heli 99.9 1.3E-24 4.4E-29 189.6 14.3 182 61-256 5-196 (196)
6 2nps_B Syntaxin 13, vesicle-as 99.9 6.9E-24 2.4E-28 155.3 9.1 70 225-294 2-71 (71)
7 1sfc_B Protein (syntaxin 1A), 99.9 4.3E-22 1.5E-26 150.1 9.4 70 222-291 14-83 (83)
8 3b5n_B Protein SSO1; snare com 99.9 1E-21 3.5E-26 142.9 9.9 66 223-288 4-69 (69)
9 1gl2_B Syntaxin 7; membrane pr 99.8 1.6E-20 5.5E-25 134.9 7.3 63 223-285 3-65 (65)
10 1n7s_B Syntaxin 1A; neuronal s 99.8 3.8E-20 1.3E-24 134.2 8.4 62 223-284 6-67 (68)
11 3c98_B Syntaxin-1A; protein co 99.8 1.6E-20 5.4E-25 170.6 7.9 227 59-296 41-279 (279)
12 2dnx_A Syntaxin-12; snare, HAB 99.8 3.7E-18 1.3E-22 139.3 16.5 112 61-172 10-123 (130)
13 1ez3_A Syntaxin-1A; three heli 99.4 8.5E-12 2.9E-16 100.8 14.2 111 60-170 7-125 (127)
14 1s94_A S-syntaxin; three helix 99.2 1.5E-11 5.1E-16 105.5 8.9 110 60-169 38-155 (180)
15 1hs7_A Syntaxin VAM3; UP-and-D 99.1 5.7E-10 2E-14 85.3 11.7 88 69-171 7-95 (97)
16 2nps_D Syntaxin-6; vesicle fus 97.6 0.00021 7.2E-09 52.9 7.0 67 222-288 12-78 (82)
17 3hd7_A Vesicle-associated memb 97.4 0.0032 1.1E-07 47.4 11.9 45 229-273 5-49 (91)
18 3hd7_B Syntaxin-1A; membrane p 97.2 0.0051 1.7E-07 47.8 11.8 83 223-309 22-105 (109)
19 1gl2_D Syntaxin 8, vesicle tra 97.2 0.00081 2.8E-08 47.3 6.5 60 223-282 3-62 (65)
20 1n7s_D SNAP-25A; neuronal snar 97.2 0.0026 8.8E-08 44.9 8.7 58 225-282 6-63 (66)
21 1sfc_D Protein (SNAP-25B), pro 97.1 0.0025 8.5E-08 47.6 8.5 59 224-282 24-82 (87)
22 1l4a_D S-SNAP25 fusion protein 96.6 0.0052 1.8E-07 45.8 6.5 58 225-282 26-83 (87)
23 3b5n_D Protein transport prote 96.3 0.026 8.9E-07 39.5 8.2 57 226-282 7-63 (64)
24 1nhl_A Synaptosomal-associated 96.2 0.024 8.3E-07 38.2 7.3 46 236-281 7-52 (54)
25 2kog_A Vesicle-associated memb 95.7 0.0029 1E-07 50.0 1.3 43 230-272 34-76 (119)
26 3b5n_C Protein transport prote 95.3 0.1 3.5E-06 37.1 8.0 38 250-287 33-70 (70)
27 1n7s_C SNAP-25A; neuronal snar 94.7 0.31 1E-05 35.4 9.3 54 229-282 23-76 (79)
28 1l4a_C S-SNAP25 fusion protein 93.0 0.11 3.9E-06 38.1 4.4 50 231-280 29-78 (83)
29 3hd7_A Vesicle-associated memb 90.2 4.4 0.00015 29.9 11.4 19 224-242 28-46 (91)
30 2c5k_T Syntaxin TLG1, T-snare 89.7 5.1 0.00017 29.9 11.3 87 61-157 6-92 (95)
31 1n7s_B Syntaxin 1A; neuronal s 87.0 5 0.00017 27.8 8.6 53 224-276 14-66 (68)
32 3b5n_B Protein SSO1; snare com 85.4 6.9 0.00024 27.2 8.6 55 224-278 12-66 (69)
33 1sfc_A VAMP 2, protein (synapt 84.7 4.9 0.00017 30.0 8.0 44 229-272 30-73 (96)
34 1gl2_C VTI1B, vesicle transpor 83.8 6.6 0.00023 27.0 7.8 52 231-282 11-62 (65)
35 4dnd_A Syntaxin-10, SYN10; str 82.7 11 0.00038 29.7 9.7 66 61-126 27-94 (130)
36 1jth_B Syntaxin 1A; coiled-coi 82.4 10 0.00035 26.8 8.6 61 224-284 12-72 (77)
37 1gl2_B Syntaxin 7; membrane pr 81.8 7.5 0.00026 26.6 7.5 54 224-277 11-64 (65)
38 1sfc_B Protein (syntaxin 1A), 78.0 16 0.00056 26.1 8.6 56 224-279 23-78 (83)
39 2nps_B Syntaxin 13, vesicle-as 76.6 14 0.00048 25.7 7.7 60 224-283 8-67 (71)
40 3ajm_A Programmed cell death p 65.0 41 0.0014 28.6 9.2 27 138-164 149-175 (213)
41 3swy_A Cyclic nucleotide-gated 62.6 27 0.00091 22.4 5.8 27 141-167 13-39 (46)
42 3ghg_A Fibrinogen alpha chain; 58.7 52 0.0018 31.9 9.6 26 140-165 131-156 (562)
43 2nps_C Vesicle transport throu 57.6 49 0.0017 23.6 8.5 58 229-286 19-76 (81)
44 3swf_A CGMP-gated cation chann 53.7 26 0.00089 24.8 5.1 27 141-167 15-41 (74)
45 3n27_A Fusion glycoprotein F0, 51.8 53 0.0018 23.4 6.4 61 224-286 15-75 (80)
46 1n7s_A Vesicle-associated memb 49.2 57 0.0019 21.8 8.9 44 229-272 4-47 (63)
47 1gl2_A Endobrevin; membrane pr 49.2 59 0.002 22.0 6.9 43 229-271 9-51 (65)
48 2nps_A VAMP-4, vesicle-associa 48.8 64 0.0022 22.4 6.7 42 231-272 10-51 (74)
49 3zx6_A HAMP, methyl-accepting 46.0 1.6E+02 0.0055 26.4 10.8 59 223-281 221-279 (341)
50 4g2k_A General control protein 45.7 1E+02 0.0035 23.8 8.3 29 63-91 19-47 (125)
51 3b5n_A Synaptobrevin homolog 1 43.7 70 0.0024 21.3 8.7 42 230-271 3-44 (61)
52 2lif_A Core protein P21; signa 48.3 5.3 0.00018 22.6 0.0 19 8-26 5-24 (27)
53 1deq_A Fibrinogen (alpha chain 41.6 2.2E+02 0.0074 26.4 10.6 23 67-89 62-84 (390)
54 1urq_A M-tomosyn isoform; tran 41.4 81 0.0028 21.4 7.4 43 231-273 6-48 (63)
55 3vkg_A Dynein heavy chain, cyt 40.1 5.7E+02 0.019 30.8 27.4 54 220-280 2026-2079(3245)
56 3fym_A Putative uncharacterize 39.4 6.3 0.00021 30.7 0.0 7 291-297 103-109 (130)
57 1qu7_A Methyl-accepting chemot 39.4 1.2E+02 0.0042 25.7 8.4 57 224-280 142-198 (227)
58 3efg_A Protein SLYX homolog; x 39.2 62 0.0021 22.9 5.3 45 231-275 16-60 (78)
59 2beq_A E2 glycoprotein; viral 38.6 38 0.0013 20.7 3.4 32 232-263 2-33 (38)
60 1lyp_A CAP18; lipopolysacchari 35.4 61 0.0021 18.2 4.4 26 100-125 2-27 (32)
61 3uun_A Dystrophin; triple heli 35.0 1.2E+02 0.0043 21.8 6.9 27 143-169 81-107 (119)
62 1l4a_A Synaptobrevin; snare, s 32.0 83 0.0028 22.2 5.1 42 230-271 16-57 (80)
63 1pi7_A VPU protein, U ORF prot 31.5 29 0.00098 21.0 2.1 8 307-314 15-22 (36)
64 2knc_B Integrin beta-3; transm 30.0 35 0.0012 24.3 2.7 18 297-314 15-32 (79)
65 3t98_B Nucleoporin NUP58/NUP45 29.8 1.2E+02 0.0041 22.2 5.7 31 62-92 9-39 (93)
66 2jqq_A Conserved oligomeric go 29.8 1.7E+02 0.0057 24.5 7.1 55 106-169 131-185 (204)
67 2xhe_B Syntaxin1; exocytosis, 29.6 85 0.0029 27.5 5.9 215 67-292 43-273 (279)
68 1lq7_A Alpha3W; three helix bu 28.2 1.3E+02 0.0044 19.7 5.0 32 75-106 5-36 (67)
69 2l8s_A Integrin alpha-1; trans 28.1 45 0.0015 22.1 2.7 19 296-314 13-31 (54)
70 2ww9_B Protein transport prote 27.7 28 0.00096 25.0 1.8 27 258-284 14-40 (80)
71 2knc_A Integrin alpha-IIB; tra 27.1 48 0.0016 21.9 2.7 17 298-314 18-34 (54)
72 3f6n_A Virion-associated prote 27.0 1.5E+02 0.0053 22.8 6.0 28 66-93 7-34 (129)
73 3c98_B Syntaxin-1A; protein co 26.8 1.1E+02 0.0037 25.9 6.0 63 224-286 214-276 (279)
74 1yke_B RNA polymerase II holoe 25.1 2.6E+02 0.0089 22.2 9.2 48 75-122 64-112 (151)
75 1jcd_A Major outer membrane li 24.5 1.5E+02 0.0052 19.3 5.9 29 257-285 18-46 (52)
76 1ykh_B RNA polymerase II holoe 24.3 2.5E+02 0.0085 21.7 8.9 57 68-124 57-114 (132)
77 3uul_A Utrophin; spectrin repe 24.1 1.6E+02 0.0054 21.3 5.8 27 143-169 81-107 (118)
78 3fym_A Putative uncharacterize 23.0 18 0.0006 28.1 0.0 20 294-313 103-122 (130)
79 3htk_A Structural maintenance 22.3 1.7E+02 0.0057 19.0 8.0 46 231-276 7-52 (60)
80 1z23_A CRK-associated substrat 21.9 2.4E+02 0.0082 22.9 6.6 102 63-164 9-113 (163)
81 2l6w_A Beta-type platelet-deri 26.5 20 0.0007 22.0 0.0 6 309-314 27-32 (39)
82 2k1a_A Integrin alpha-IIB; sin 20.9 79 0.0027 19.7 2.7 17 298-314 16-32 (42)
83 1vk8_A Hypothetical protein TM 20.8 13 0.00045 28.2 -1.1 17 6-22 10-26 (106)
84 1pp9_D Cytochrome C-1, cytochr 20.0 1.3E+02 0.0044 26.1 4.9 41 269-309 179-219 (241)
No 1
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B
Probab=100.00 E-value=1.1e-35 Score=271.86 Aligned_cols=226 Identities=19% Similarity=0.243 Sum_probs=160.2
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-------cC
Q 047939 59 LVNGKQDSTQAVASGIFQINTAVSTFQRLVNTL-GTPKDTPELREKIHKTRLHIGQLVKDTSAKLKQASET-------DH 130 (314)
Q Consensus 59 ~~~~f~~~~~~i~~~I~~I~~~v~~L~~~~~~L-~t~~D~~~lr~~I~~l~~~i~~l~~~~~~~lk~l~~~-------~~ 130 (314)
+.++|...+++|...|..|+.++.+|+++++.+ +++.+.+.++.+|+.++.+++.+++.|+.+|+.|... .+
T Consensus 29 ~m~~F~~~v~~I~~~I~~I~~~v~~l~~l~~~~l~~~~~~~~~~~~l~~l~~~i~~~~~~i~~~Lk~l~~~~~~~~~~~~ 108 (267)
T 1dn1_B 29 FMDEFFEQVEEIRGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQEEGLNR 108 (267)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCC
Confidence 456899999999999999999999999999965 4566667899999999999999999999999999764 22
Q ss_pred CCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc----CC-CCCCCCCCCcccccccccCccchHHHHHHHHHH
Q 047939 131 HAQVSADKKIADAKLAKDFQAVLKEFQKAQRLAAERETAY----TP-FVPQAVLPSSYTAHELDISSDRSAEQHALLVES 205 (314)
Q Consensus 131 ~~~~~r~~k~~~~kL~~~f~~~l~~Fq~~Q~~~~~r~k~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~eqq~l~~~~ 205 (314)
+++..|++++++..|+++|++++.+|+.+|..|++++|.. .. ..+.++ ..+.++.--.++...++++++.++
T Consensus 109 ~~~e~Rirk~q~~~L~~~f~~~m~~yq~~Q~~y~e~~k~~i~Rq~~i~~~~~t---deeie~~ie~g~~~~f~q~~l~~~ 185 (267)
T 1dn1_B 109 SSADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRERCKGRIQRQLEITGRTTT---SEELEDMLESGNPAIFASGIIMDS 185 (267)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCC---HHHHHHHHHTCSSCTTTTTCCCCS
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhccCCCCC---HHHHHHHHhCCcHHHHHHHHHHhh
Confidence 2345589999999999999999999999999999987642 22 233221 111100000111112332222111
Q ss_pred HHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 047939 206 RRQEVVLLDNEIAFNEAIIEERELGIQEIQQQIGEVNEVFKDLAVLVHEQGTIIDDIGSHIENSQVATAQGKSQLVKAAK 285 (314)
Q Consensus 206 ~~q~~~~~~~E~~~~e~~i~eR~~eI~~Ie~~I~eLneiF~dLa~lV~eQGe~ID~Ie~Nve~a~~~v~~a~~~L~~A~~ 285 (314)
++. ......|++||++|.+||++|.|||+||+||++||++||++||+||+||+.+..||++|..+|.+|.+
T Consensus 186 --~~~-------~~~l~~i~~R~~~i~~ie~~i~el~~if~dla~lV~~Qg~~id~Ie~nv~~a~~~v~~~~~~l~kA~~ 256 (267)
T 1dn1_B 186 --SIS-------KQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVK 256 (267)
T ss_dssp --HHH-------HHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCSGGGCHHHHHHTCCCCCCCCC--------
T ss_pred --HHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 110 11224599999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcchhhHHH
Q 047939 286 TQRSNSSLTCL 296 (314)
Q Consensus 286 ~qk~~rk~~~~ 296 (314)
|||++|||+||
T Consensus 257 ~q~~~rkk~~~ 267 (267)
T 1dn1_B 257 YQSKARRKKIM 267 (267)
T ss_dssp -----------
T ss_pred HHHHhcCcccC
Confidence 99999999986
No 2
>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis}
Probab=99.97 E-value=5.7e-32 Score=248.93 Aligned_cols=217 Identities=21% Similarity=0.278 Sum_probs=151.6
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC------
Q 047939 60 VNGKQDSTQAVASGIFQINTAVSTFQRLVN-TLGTPKDTP--ELREKIHKTRLHIGQLVKDTSAKLKQASETDH------ 130 (314)
Q Consensus 60 ~~~f~~~~~~i~~~I~~I~~~v~~L~~~~~-~L~t~~D~~--~lr~~I~~l~~~i~~l~~~~~~~lk~l~~~~~------ 130 (314)
+++|...+++|...|..|+.++..|.++++ .|+++.++. .++.+|+.++..|+.+++.|+..|+.|.....
T Consensus 43 ~~~F~~~~~~I~~~I~~i~~~l~~L~~l~~~~l~t~~~~~~~~~~~~ie~l~~~i~~~~~~i~~~lk~l~~~~~~~~~~~ 122 (279)
T 2xhe_B 43 MADFFNRVKRIRDNIEDIEQAIEQVAQLHTESLVAVSKEDRDRLNEKLQDTMARISALGNKIRADLKQIEKENKRAQQEG 122 (279)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 467999999999999999999999999997 588888777 89999999999999999999999999986431
Q ss_pred -----CCc-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC----CCCCCCCCCcccccccccC-ccchHHHH
Q 047939 131 -----HAQ-VSADKKIADAKLAKDFQAVLKEFQKAQRLAAERETAYTP----FVPQAVLPSSYTAHELDIS-SDRSAEQH 199 (314)
Q Consensus 131 -----~~~-~~r~~k~~~~kL~~~f~~~l~~Fq~~Q~~~~~r~k~~~~----~~~~~~~~~~~~~~~~~~~-~~~~~eqq 199 (314)
+.. +.+++++++.+|+++|++++..|+++|..|.+++|.... +.+....++. .+ ..+. ++...+++
T Consensus 123 ~~~~~~~~~e~r~~k~~~~~L~~~f~~~~~~Fq~~Q~~y~e~~k~~~~R~~~i~~~~~~~ee--~~-~~~e~g~~~~f~q 199 (279)
T 2xhe_B 123 TFEDGTVSTDLRIRQSQHSSLSRKFVKVMTRYNDVQAENKRRYGENVARQCRVVEPSLSDDA--IQ-KVIEHGTEGIFSG 199 (279)
T ss_dssp CCSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSCCSSCCCCSSTT--HH-HHHHHC-------
T ss_pred cccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHH--HH-HHHhCCchHHHHH
Confidence 112 448899999999999999999999999999998875332 2211100100 00 0000 01111111
Q ss_pred HHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhHHHHHHHHHHHHHH
Q 047939 200 ALLVESRRQEVVLLDNEIAFNEAIIEERELGIQEIQQQIGEVNEVFKDLAVLVHEQGTIIDDIGSHIENSQVATAQGKSQ 279 (314)
Q Consensus 200 ~l~~~~~~q~~~~~~~E~~~~e~~i~eR~~eI~~Ie~~I~eLneiF~dLa~lV~eQGe~ID~Ie~Nve~a~~~v~~a~~~ 279 (314)
...+ ..+..+ ..|++|+++|++||++|.|||+||+||++||++||++||+||+||+.+..||++|+.+
T Consensus 200 -----~~~~-----~~~~~~--~~i~eR~~eI~~Ie~~i~el~~if~dla~lV~~Qg~~id~Ie~nv~~~~~~v~~~~~~ 267 (279)
T 2xhe_B 200 -----MRLE-----GAEAKL--NEIRDRHKDIQQLERSLLELHEMFTDMSTLVASQGEMIDRIEFSVEQSHNYVKKATEQ 267 (279)
T ss_dssp ----------------------CTTTHHHHHHHHHHHHHHHHHHHHHHHHTTTTTSCSSTTCHHHHHHTCCCCC------
T ss_pred -----HHHH-----HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000 011122 3499999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcch
Q 047939 280 LVKAAKTQRSNS 291 (314)
Q Consensus 280 L~~A~~~qk~~r 291 (314)
|.+|.+|||++|
T Consensus 268 l~kA~~~qk~~R 279 (279)
T 2xhe_B 268 VVQARHYQESAR 279 (279)
T ss_dssp ------------
T ss_pred HHHHHHHhHccC
Confidence 999999999986
No 3
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=99.96 E-value=2.5e-28 Score=193.54 Aligned_cols=91 Identities=26% Similarity=0.390 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHH
Q 047939 222 AIIEERELGIQEIQQQIGEVNEVFKDLAVLVHEQGTIIDDIGSHIENSQVATAQGKSQLVKAAKTQRSNSSLTCLLLVIF 301 (314)
Q Consensus 222 ~~i~eR~~eI~~Ie~~I~eLneiF~dLa~lV~eQGe~ID~Ie~Nve~a~~~v~~a~~~L~~A~~~qk~~rk~~~~l~ii~ 301 (314)
..+++|+++|++||++|.|||+||+||++||++||++||+||+|++.+.+||++|+.+|.+|.+|||++|||+||+++|+
T Consensus 14 ~~i~eR~~eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~v~~g~~eL~kA~~yqk~~rkk~~i~l~~~ 93 (109)
T 3hd7_B 14 SEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRKKIMIIICC 93 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcceehHHHH
Confidence 34999999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred HHHHHHHHHHH
Q 047939 302 GIVLLILVVVL 312 (314)
Q Consensus 302 ~Ivl~Ivl~vv 312 (314)
+|+++|+.+++
T Consensus 94 ~i~~~i~~~~~ 104 (109)
T 3hd7_B 94 VILGIIIASTI 104 (109)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 88877766655
No 4
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B
Probab=99.92 E-value=2.9e-25 Score=165.21 Aligned_cols=74 Identities=30% Similarity=0.401 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhcchhhHHH
Q 047939 223 IIEERELGIQEIQQQIGEVNEVFKDLAVLVHEQGTIIDDIGSHIENSQVATAQGKSQLVKAAKTQRSNSSLTCL 296 (314)
Q Consensus 223 ~i~eR~~eI~~Ie~~I~eLneiF~dLa~lV~eQGe~ID~Ie~Nve~a~~~v~~a~~~L~~A~~~qk~~rk~~~~ 296 (314)
.+++|+++|++||++|.|||+||+||++||++||++||+||+||+.+..||++|+.+|.+|.+||+++|||+||
T Consensus 4 ~i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~q~~~rkk~~i 77 (77)
T 1jth_B 4 EIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRKKIM 77 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccC
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999986
No 5
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=99.92 E-value=1.3e-24 Score=189.62 Aligned_cols=182 Identities=16% Similarity=0.245 Sum_probs=137.9
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhh
Q 047939 61 NGKQDSTQAVASGIFQINTAVSTFQRLVNT-LGTPKDT--PELREKIHKTRLHIGQLVKDTSAKLKQASETDHHAQVSAD 137 (314)
Q Consensus 61 ~~f~~~~~~i~~~I~~I~~~v~~L~~~~~~-L~t~~D~--~~lr~~I~~l~~~i~~l~~~~~~~lk~l~~~~~~~~~~r~ 137 (314)
++|.+.+++|...|+.|+.++..|+++++. ++++.++ ..++.+|+.++.+|+.+++.|+.+|+.+..... ..|+
T Consensus 5 ~~f~~~~~~i~~~i~~i~~~v~~L~~l~~~~l~~~~~~~~~~~~~~i~~l~~~i~~~~~~~~~~lk~l~~~~~---~~r~ 81 (196)
T 1fio_A 5 VGFMNKISQINRDLDKYDHTINQVDSLHKRLLTEVNEEQASHLRHSLDNFVAQATDLQFKLKNEIKSAQRDGI---HDTN 81 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---TCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch---hhhH
Confidence 468999999999999999999999999997 5556544 379999999999999999999999999998753 4689
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-----CCCCCCCCCCCcccccccccC--ccchHHHHHHHHHHHHHHH
Q 047939 138 KKIADAKLAKDFQAVLKEFQKAQRLAAERETAY-----TPFVPQAVLPSSYTAHELDIS--SDRSAEQHALLVESRRQEV 210 (314)
Q Consensus 138 ~k~~~~kL~~~f~~~l~~Fq~~Q~~~~~r~k~~-----~~~~~~~~~~~~~~~~~~~~~--~~~~~eqq~l~~~~~~q~~ 210 (314)
+++++.+|+++|++++..|+++|..|.+++|.. ....|.+ ++.. .++ .+. ++...++++++.++++++.
T Consensus 82 ~k~~~~~L~~~f~~~~~~fq~~Q~~~~~~~k~~~~rq~~i~~~~~--~~~e-~~~-~~~~~~~~~~f~~~~~~~~~~~~~ 157 (196)
T 1fio_A 82 KQAQAENSRQRFLKLIQDYRIVDSNYKEENKEQAKRQYMIIQPEA--TEDE-VEA-AISDVGGQQIFSQALLNANRRGEA 157 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTC--CHHH-HHH-HTSHHHHHHHHHHHTC------CH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC--CHHH-HHH-HHHcCCchhHHHHHHHhccchHHH
Confidence 999999999999999999999999999987642 2233322 1111 111 111 1122334444332222211
Q ss_pred HHHhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 047939 211 VLLDNEIAFNEAIIEERELGIQEIQQQIGEVNEVFKDLAVLVHEQG 256 (314)
Q Consensus 211 ~~~~~E~~~~e~~i~eR~~eI~~Ie~~I~eLneiF~dLa~lV~eQG 256 (314)
......|++||++|++||++|.|||+||+|||+||++||
T Consensus 158 -------~~~l~~i~eR~~eI~~IE~sI~EL~qiF~Dla~LV~~QG 196 (196)
T 1fio_A 158 -------KTALAEVQARHQELLKLEKSMAELTQLFNDMEELVIEQQ 196 (196)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCC
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 112345999999999999999999999999999999998
No 6
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=99.90 E-value=6.9e-24 Score=155.28 Aligned_cols=70 Identities=37% Similarity=0.605 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhcchhhH
Q 047939 225 EERELGIQEIQQQIGEVNEVFKDLAVLVHEQGTIIDDIGSHIENSQVATAQGKSQLVKAAKTQRSNSSLT 294 (314)
Q Consensus 225 ~eR~~eI~~Ie~~I~eLneiF~dLa~lV~eQGe~ID~Ie~Nve~a~~~v~~a~~~L~~A~~~qk~~rk~~ 294 (314)
++|+++|++||++|.|||+||+||+.||++||++||+||+||+.+..||++|..+|.+|.+|||++|||+
T Consensus 2 ~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~~qk~~rk~~ 71 (71)
T 2nps_B 2 SMRETAIQQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERASDQLQRAAYYQKKSRKKM 71 (71)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC---
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 4899999999999999999999999999999999999999999999999999999999999999999885
No 7
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B
Probab=99.87 E-value=4.3e-22 Score=150.06 Aligned_cols=70 Identities=31% Similarity=0.431 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhcch
Q 047939 222 AIIEERELGIQEIQQQIGEVNEVFKDLAVLVHEQGTIIDDIGSHIENSQVATAQGKSQLVKAAKTQRSNS 291 (314)
Q Consensus 222 ~~i~eR~~eI~~Ie~~I~eLneiF~dLa~lV~eQGe~ID~Ie~Nve~a~~~v~~a~~~L~~A~~~qk~~r 291 (314)
..+++|+++|++||++|.|||+||+||+.||++||++||+||+||+.+..||++|..+|.+|.+|||++|
T Consensus 14 ~~i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~~qk~~r 83 (83)
T 1sfc_B 14 SEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKAR 83 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHccC
Confidence 4599999999999999999999999999999999999999999999999999999999999999999876
No 8
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=99.86 E-value=1e-21 Score=142.86 Aligned_cols=66 Identities=27% Similarity=0.462 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhHHHHHHHHHHHHHHHHHHHHHhh
Q 047939 223 IIEERELGIQEIQQQIGEVNEVFKDLAVLVHEQGTIIDDIGSHIENSQVATAQGKSQLVKAAKTQR 288 (314)
Q Consensus 223 ~i~eR~~eI~~Ie~~I~eLneiF~dLa~lV~eQGe~ID~Ie~Nve~a~~~v~~a~~~L~~A~~~qk 288 (314)
.+++|+++|++||++|.|||+||+||+.||++||++||+||+||+.+..||++|+.+|.+|.+|||
T Consensus 4 ~i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~qr 69 (69)
T 3b5n_B 4 EVQARHQELLKLEKSMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQLDVEQGVGHTDKAVKSAR 69 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 489999999999999999999999999999999999999999999999999999999999999986
No 9
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=99.82 E-value=1.6e-20 Score=134.87 Aligned_cols=63 Identities=40% Similarity=0.713 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 047939 223 IIEERELGIQEIQQQIGEVNEVFKDLAVLVHEQGTIIDDIGSHIENSQVATAQGKSQLVKAAK 285 (314)
Q Consensus 223 ~i~eR~~eI~~Ie~~I~eLneiF~dLa~lV~eQGe~ID~Ie~Nve~a~~~v~~a~~~L~~A~~ 285 (314)
++++|+++|++||++|.|||+||+||+.||++||++||+||+||+.+..||++|..+|.+|.+
T Consensus 3 ~i~eR~~~i~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~k 65 (65)
T 1gl2_B 3 HMHERESSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVESAEVHVQQANQQLSRAAN 65 (65)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 488999999999999999999999999999999999999999999999999999999999863
No 10
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B
Probab=99.81 E-value=3.8e-20 Score=134.21 Aligned_cols=62 Identities=32% Similarity=0.462 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 047939 223 IIEERELGIQEIQQQIGEVNEVFKDLAVLVHEQGTIIDDIGSHIENSQVATAQGKSQLVKAA 284 (314)
Q Consensus 223 ~i~eR~~eI~~Ie~~I~eLneiF~dLa~lV~eQGe~ID~Ie~Nve~a~~~v~~a~~~L~~A~ 284 (314)
.+++|+++|++||++|.|||+||+||+.||++||++||+||+||+.+..||++|+.+|.+|.
T Consensus 6 ~i~eR~~ei~~Ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~ 67 (68)
T 1n7s_B 6 EIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAV 67 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 48999999999999999999999999999999999999999999999999999999999995
No 11
>3c98_B Syntaxin-1A; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus}
Probab=99.81 E-value=1.6e-20 Score=170.60 Aligned_cols=227 Identities=19% Similarity=0.245 Sum_probs=151.1
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-------C
Q 047939 59 LVNGKQDSTQAVASGIFQINTAVSTFQRLVNT-LGTPKDTPELREKIHKTRLHIGQLVKDTSAKLKQASETD-------H 130 (314)
Q Consensus 59 ~~~~f~~~~~~i~~~I~~I~~~v~~L~~~~~~-L~t~~D~~~lr~~I~~l~~~i~~l~~~~~~~lk~l~~~~-------~ 130 (314)
+.++|...+++|...|.+|..++.+|.++++. +.++.+.......++.+..+++.+...+...++.+.... .
T Consensus 41 ~m~ef~~~ve~i~~~i~~i~~~v~el~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~i~~~~~~~~~i~~ 120 (279)
T 3c98_B 41 FMDEFFEQVEEIRGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQEEGLNR 120 (279)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 56789999999999999999999999999884 678888888899999999999999999988887776532 1
Q ss_pred CCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc----CCCCCCCCCCCcccccccccCccchHHHHHHHHHHH
Q 047939 131 HAQVSADKKIADAKLAKDFQAVLKEFQKAQRLAAERETAY----TPFVPQAVLPSSYTAHELDISSDRSAEQHALLVESR 206 (314)
Q Consensus 131 ~~~~~r~~k~~~~kL~~~f~~~l~~Fq~~Q~~~~~r~k~~----~~~~~~~~~~~~~~~~~~~~~~~~~~eqq~l~~~~~ 206 (314)
.....+....+...|...|.....+|...++.|....+.. ......+. .+ .........+.............
T Consensus 121 ~~~~i~~~~~qtn~La~n~a~~~a~~~~~~~~~~~vva~evr~la~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~- 197 (279)
T 3c98_B 121 SSADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRERCKGRIQRQLEITGRTT-TS-EELEDMLESGNPAIFASGIIMDS- 197 (279)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC-CH-HHHHHHHHSCCTTSSTTTSCSCS-
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCc-cc-hHHHHHHHhhhhHHHHHHHHHHH-
Confidence 2334567788999999999999999999999988543321 11111110 00 00000000000000000000000
Q ss_pred HHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 047939 207 RQEVVLLDNEIAFNEAIIEERELGIQEIQQQIGEVNEVFKDLAVLVHEQGTIIDDIGSHIENSQVATAQGKSQLVKAAKT 286 (314)
Q Consensus 207 ~q~~~~~~~E~~~~e~~i~eR~~eI~~Ie~~I~eLneiF~dLa~lV~eQGe~ID~Ie~Nve~a~~~v~~a~~~L~~A~~~ 286 (314)
..+......+++|+.++.+|+.+|.+|+++|.+|+.+|.+||+++|+|++||+.+.++|++|..+|.+|.+|
T Consensus 198 --------~~~~~~~~~i~~~~~~i~~I~~~i~ei~~~~~~ia~~v~eQ~~~~~~I~~nv~~~~~~v~~~~~el~~A~~~ 269 (279)
T 3c98_B 198 --------SISKQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKY 269 (279)
T ss_dssp --------SSTTHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCSGGGCHHHHHHTCCCCCCCCC---------
T ss_pred --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 001112234899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcchhhHHH
Q 047939 287 QRSNSSLTCL 296 (314)
Q Consensus 287 qk~~rk~~~~ 296 (314)
|+++|||+|+
T Consensus 270 q~~~Rkkk~i 279 (279)
T 3c98_B 270 QSKARRKKIM 279 (279)
T ss_dssp ----------
T ss_pred HHHHhCcCcC
Confidence 9999999985
No 12
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=3.7e-18 Score=139.26 Aligned_cols=112 Identities=25% Similarity=0.393 Sum_probs=104.3
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC--CCchhhhH
Q 047939 61 NGKQDSTQAVASGIFQINTAVSTFQRLVNTLGTPKDTPELREKIHKTRLHIGQLVKDTSAKLKQASETDH--HAQVSADK 138 (314)
Q Consensus 61 ~~f~~~~~~i~~~I~~I~~~v~~L~~~~~~L~t~~D~~~lr~~I~~l~~~i~~l~~~~~~~lk~l~~~~~--~~~~~r~~ 138 (314)
.+|..+++.|+.+|++|+.+++.|+++++.|||++|++++|++|+.+...++++++.+...|++|..... ...+++.+
T Consensus 10 ~ef~~l~~~is~~I~~In~~vs~l~r~v~~LGT~kDt~~LR~kl~~~~~~t~~l~k~ts~~lk~L~~~~~~~~~~~~r~~ 89 (130)
T 2dnx_A 10 RDFSSIIQTCSGNIQRISQATAQIKNLMSQLGTKQDSSKLQENLQQLQHSTNQLAKETNELLKELGSLPLPLSTSEQRQQ 89 (130)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSSHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHH
Confidence 5899999999999999999999999999999999999999999999999999999999999999999852 23356889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 047939 139 KIADAKLAKDFQAVLKEFQKAQRLAAERETAYTP 172 (314)
Q Consensus 139 k~~~~kL~~~f~~~l~~Fq~~Q~~~~~r~k~~~~ 172 (314)
+.+.+||.++|+.++++||++|+.+.+|+|....
T Consensus 90 k~q~~KL~~dF~~~L~~FQ~~Qr~~aekek~~~~ 123 (130)
T 2dnx_A 90 RLQKERLMNDFSAALNNFQAVQRRVSEKEKESIA 123 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 9999999999999999999999999999987554
No 13
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=99.38 E-value=8.5e-12 Score=100.83 Aligned_cols=111 Identities=17% Similarity=0.224 Sum_probs=100.0
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-------CC
Q 047939 60 VNGKQDSTQAVASGIFQINTAVSTFQRLVNT-LGTPKDTPELREKIHKTRLHIGQLVKDTSAKLKQASETD-------HH 131 (314)
Q Consensus 60 ~~~f~~~~~~i~~~I~~I~~~v~~L~~~~~~-L~t~~D~~~lr~~I~~l~~~i~~l~~~~~~~lk~l~~~~-------~~ 131 (314)
+++|...+++|...|..|+.++.+|++++.. |.++...+.++.+|+.++.+|+.+++.|+.+|+.|...+ ++
T Consensus 7 m~~F~~~v~~I~~~i~~i~~~v~~l~~~~~~~L~~~~~~~~~~~~l~~l~~~i~~~a~~ik~~Lk~l~~~~~~~~~~~~~ 86 (127)
T 1ez3_A 7 MDEFFEQVEEIRGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQEEGLNRS 86 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC
Confidence 3579999999999999999999999999984 777877888999999999999999999999999998642 23
Q ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 047939 132 AQVSADKKIADAKLAKDFQAVLKEFQKAQRLAAERETAY 170 (314)
Q Consensus 132 ~~~~r~~k~~~~kL~~~f~~~l~~Fq~~Q~~~~~r~k~~ 170 (314)
++..|++++++..|++.|+++|.+|+.+|..|+++++..
T Consensus 87 s~~~Rir~~q~~~L~~kf~e~m~~y~~~q~~yre~~k~r 125 (127)
T 1ez3_A 87 SADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRERCKGR 125 (127)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455689999999999999999999999999999998764
No 14
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=99.25 E-value=1.5e-11 Score=105.49 Aligned_cols=110 Identities=15% Similarity=0.214 Sum_probs=92.6
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-------CC
Q 047939 60 VNGKQDSTQAVASGIFQINTAVSTFQRLVNT-LGTPKDTPELREKIHKTRLHIGQLVKDTSAKLKQASETD-------HH 131 (314)
Q Consensus 60 ~~~f~~~~~~i~~~I~~I~~~v~~L~~~~~~-L~t~~D~~~lr~~I~~l~~~i~~l~~~~~~~lk~l~~~~-------~~ 131 (314)
.++|...+++|...|..|..++..|++++.. |+++.+...++.+|+.++.+|+.+++.|+.+|+.|.... .+
T Consensus 38 m~~F~~~v~~I~~~i~~i~~~v~~l~~~~~~~L~~~~~~~~~k~~le~l~~~i~~~a~~ik~~Lk~l~~~~~~~~~~~~~ 117 (180)
T 1s94_A 38 MEEFFEQVEEIRAMIDKISDNVDAVKKKHSDILSAPQTDDQMKEELEELMTDIKRTANKVRGKLKTIELNIEQEEHSNKS 117 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCC
Confidence 3569999999999999999999999999986 888888889999999999999999999999999998642 23
Q ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 047939 132 AQVSADKKIADAKLAKDFQAVLKEFQKAQRLAAERETA 169 (314)
Q Consensus 132 ~~~~r~~k~~~~kL~~~f~~~l~~Fq~~Q~~~~~r~k~ 169 (314)
++..|++++++..|+++|++++.+|+.+|..|++++|.
T Consensus 118 s~~~Rir~~q~~~L~~kf~~~m~~yq~~q~~y~~~~K~ 155 (180)
T 1s94_A 118 SADLRIRKTQYSTISRKFVEVMSDYNTTQIDYRDRCKA 155 (180)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCCC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678999999999999999999999999999987654
No 15
>1hs7_A Syntaxin VAM3; UP-and-DOWN three-helix bundle insertion preceding proline in AN alpha-helix, endocytosis/exocytosis complex; NMR {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=99.14 E-value=5.7e-10 Score=85.31 Aligned_cols=88 Identities=17% Similarity=0.258 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhccCCCchhhhHHHHHHHHHH
Q 047939 69 AVASGIFQINTAVSTFQRLVNTLGTPKDTPELREKIH-KTRLHIGQLVKDTSAKLKQASETDHHAQVSADKKIADAKLAK 147 (314)
Q Consensus 69 ~i~~~I~~I~~~v~~L~~~~~~L~t~~D~~~lr~~I~-~l~~~i~~l~~~~~~~lk~l~~~~~~~~~~r~~k~~~~kL~~ 147 (314)
+....|..+..++..|+++...|||.+|+++||++|+ .++..++.+.+++. .+..+ .+.++|.+
T Consensus 7 d~~~li~t~s~niq~l~k~~~qlGTkrD~~~LR~~l~~~l~~~~~~L~k~~~-~l~~l--------------~qkeRL~~ 71 (97)
T 1hs7_A 7 ELSNLIETFAEQSRVLEKECTKIGSKRDSKELRYKIETELIPNCTSVRDKIE-SNILI--------------HQNGKLSA 71 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHTHHHHHHHHHHHHH-HSTHH--------------HHCHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHH-Hhccc--------------chhhHHHH
Confidence 3334444444455589999999999999999999999 99999999999998 22222 04789999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcC
Q 047939 148 DFQAVLKEFQKAQRLAAERETAYT 171 (314)
Q Consensus 148 ~f~~~l~~Fq~~Q~~~~~r~k~~~ 171 (314)
+|..+++.||.+|+.|.+|++.+.
T Consensus 72 dF~~l~~~fQ~~qr~y~ek~~e~~ 95 (97)
T 1hs7_A 72 DFKNLKTKYQSLQQSYNQRKSLFP 95 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999999999999999988753
No 16
>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens}
Probab=97.55 E-value=0.00021 Score=52.88 Aligned_cols=67 Identities=13% Similarity=0.239 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhHHHHHHHHHHHHHHHHHHHHHhh
Q 047939 222 AIIEERELGIQEIQQQIGEVNEVFKDLAVLVHEQGTIIDDIGSHIENSQVATAQGKSQLVKAAKTQR 288 (314)
Q Consensus 222 ~~i~eR~~eI~~Ie~~I~eLneiF~dLa~lV~eQGe~ID~Ie~Nve~a~~~v~~a~~~L~~A~~~qk 288 (314)
.++++-++.+..|...|..|++|-.+|+.-|.+|..+||.++..++.+...+..+++.+.+..+..+
T Consensus 12 ~~~~eQD~~Ld~L~~~v~~LK~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~L~~~~~r~~~~~~~~~ 78 (82)
T 2nps_D 12 NMGRMQDEQLELVSGSIGVLKNMSQRIGGELEEQAVMLEDFSHELESTQSRLDNVMKKLAKVSHMTS 78 (82)
T ss_dssp ------CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3467778889999999999999999999999999999999999999999999999999988866543
No 17
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=97.39 E-value=0.0032 Score=47.41 Aligned_cols=45 Identities=18% Similarity=0.253 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhHHHHHHHH
Q 047939 229 LGIQEIQQQIGEVNEVFKDLAVLVHEQGTIIDDIGSHIENSQVAT 273 (314)
Q Consensus 229 ~eI~~Ie~~I~eLneiF~dLa~lV~eQGe~ID~Ie~Nve~a~~~v 273 (314)
+.+.++...+.|+..++.+==.-|-+.||-||.+++-.+.-....
T Consensus 5 d~l~~vq~ev~evk~iM~~NI~kvL~RgekL~~L~~kt~~L~~~s 49 (91)
T 3hd7_A 5 RRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGA 49 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHH
Confidence 457888999999999999999999999999999887766555543
No 18
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=97.24 E-value=0.0051 Score=47.84 Aligned_cols=83 Identities=14% Similarity=0.133 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHH-
Q 047939 223 IIEERELGIQEIQQQIGEVNEVFKDLAVLVHEQGTIIDDIGSHIENSQVATAQGKSQLVKAAKTQRSNSSLTCLLLVIF- 301 (314)
Q Consensus 223 ~i~eR~~eI~~Ie~~I~eLneiF~dLa~lV~eQGe~ID~Ie~Nve~a~~~v~~a~~~L~~A~~~qk~~rk~~~~l~ii~- 301 (314)
.+.+=++.|.+|.+-..|+..|..+=+.++..=...+++...||+.+...+.+|.+.=+++ ++...+++++++++
T Consensus 22 eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~v~~g~~eL~kA~~yqk~~----rkk~~i~l~~~~i~~ 97 (109)
T 3hd7_B 22 EIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKA----RRKKIMIIICCVILG 97 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----cCcceehHHHHHHHH
Confidence 4777778899999999999999999999999999999999999999999999998654443 33456666544444
Q ss_pred HHHHHHHH
Q 047939 302 GIVLLILV 309 (314)
Q Consensus 302 ~Ivl~Ivl 309 (314)
+|+.+++.
T Consensus 98 ~i~~~~~~ 105 (109)
T 3hd7_B 98 IIIASTIG 105 (109)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhc
Confidence 44444443
No 19
>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=97.22 E-value=0.00081 Score=47.34 Aligned_cols=60 Identities=18% Similarity=0.345 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhHHHHHHHHHHHHHHHHH
Q 047939 223 IIEERELGIQEIQQQIGEVNEVFKDLAVLVHEQGTIIDDIGSHIENSQVATAQGKSQLVK 282 (314)
Q Consensus 223 ~i~eR~~eI~~Ie~~I~eLneiF~dLa~lV~eQGe~ID~Ie~Nve~a~~~v~~a~~~L~~ 282 (314)
++++-.+.+..|...+..|++|-.+|+.-|.+|..+||.++..++.+...+..+++.+.+
T Consensus 3 ~~~eqD~~Ld~L~~~v~~lk~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~l~~~~~rl~~ 62 (65)
T 1gl2_D 3 HMQEQDAGLDALSSIISRQKQMGQEIGNELDEQNEIIDDLANLVENTDEKLRTEARRVTL 62 (65)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777889999999999999999999999999999999999999999999999887754
No 20
>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B
Probab=97.17 E-value=0.0026 Score=44.86 Aligned_cols=58 Identities=16% Similarity=0.280 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhHHHHHHHHHHHHHHHHH
Q 047939 225 EERELGIQEIQQQIGEVNEVFKDLAVLVHEQGTIIDDIGSHIENSQVATAQGKSQLVK 282 (314)
Q Consensus 225 ~eR~~eI~~Ie~~I~eLneiF~dLa~lV~eQGe~ID~Ie~Nve~a~~~v~~a~~~L~~ 282 (314)
.+-.+.+..|...+..|+.|-.+|+.-|..|..+||.|+..++.+...+..+++.+.+
T Consensus 6 ~eqD~~Ld~L~~~v~~lk~la~~ig~El~~Qn~~Ld~l~~~~d~~~~~l~~~~~rl~~ 63 (66)
T 1n7s_D 6 NEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATK 63 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3556789999999999999999999999999999999999999999999999887754
No 21
>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=97.11 E-value=0.0025 Score=47.56 Aligned_cols=59 Identities=15% Similarity=0.260 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhHHHHHHHHHHHHHHHHH
Q 047939 224 IEERELGIQEIQQQIGEVNEVFKDLAVLVHEQGTIIDDIGSHIENSQVATAQGKSQLVK 282 (314)
Q Consensus 224 i~eR~~eI~~Ie~~I~eLneiF~dLa~lV~eQGe~ID~Ie~Nve~a~~~v~~a~~~L~~ 282 (314)
.+|-.+.+..|...+..|+.|-.+|+.-|.+|..+||.|+..++.+...+..+++.+.+
T Consensus 24 e~eqD~~Ld~Ls~~v~rLk~la~~ig~Eld~Qn~~Ld~i~~~~D~~~~rl~~~~~rl~~ 82 (87)
T 1sfc_D 24 ENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATK 82 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 45667789999999999999999999999999999999999999999999999887765
No 22
>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=96.59 E-value=0.0052 Score=45.84 Aligned_cols=58 Identities=17% Similarity=0.312 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhHHHHHHHHHHHHHHHHH
Q 047939 225 EERELGIQEIQQQIGEVNEVFKDLAVLVHEQGTIIDDIGSHIENSQVATAQGKSQLVK 282 (314)
Q Consensus 225 ~eR~~eI~~Ie~~I~eLneiF~dLa~lV~eQGe~ID~Ie~Nve~a~~~v~~a~~~L~~ 282 (314)
.+-++.+..|...+..|+.|=.+|+.-|..|.++||+|+..++.+...+..+++.+.+
T Consensus 26 ~eqD~~Ld~ls~~l~rLk~mA~~mg~Eld~Qn~~LD~i~~~~D~~~~rl~~~n~r~~k 83 (87)
T 1l4a_D 26 DDMENNMKEVSSMIGNLRNMAIDMGNEIGSQNRQVDRIQQKAESNESRIDEANKKATK 83 (87)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556789999999999999999999999999999999999999999999999887764
No 23
>3b5n_D Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae}
Probab=96.27 E-value=0.026 Score=39.48 Aligned_cols=57 Identities=12% Similarity=0.183 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhHHHHHHHHHHHHHHHHH
Q 047939 226 ERELGIQEIQQQIGEVNEVFKDLAVLVHEQGTIIDDIGSHIENSQVATAQGKSQLVK 282 (314)
Q Consensus 226 eR~~eI~~Ie~~I~eLneiF~dLa~lV~eQGe~ID~Ie~Nve~a~~~v~~a~~~L~~ 282 (314)
|-++.+.+|...+.-|+.|=.+|+.-|..|-++||+|+..++.+...+..+++.|.+
T Consensus 7 e~D~nLd~l~~~~~rlk~ma~~mg~Eid~QN~~ldrI~~k~d~~d~ri~~~~~Rl~~ 63 (64)
T 3b5n_D 7 EIDRNLDQIQQVSNRLKKMALTTGKELDSQQKRLNNIEESTDDLDINLHMNTNRLAG 63 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 455678899999999999999999999999999999999999999999999887753
No 24
>1nhl_A Synaptosomal-associated protein 23; snare, coiled-coil, protein transport; 2.30A {Homo sapiens} SCOP: h.1.15.1
Probab=96.15 E-value=0.024 Score=38.21 Aligned_cols=46 Identities=11% Similarity=0.089 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHhhcchhHHHHHhhHHHHHHHHHHHHHHHH
Q 047939 236 QQIGEVNEVFKDLAVLVHEQGTIIDDIGSHIENSQVATAQGKSQLV 281 (314)
Q Consensus 236 ~~I~eLneiF~dLa~lV~eQGe~ID~Ie~Nve~a~~~v~~a~~~L~ 281 (314)
+-+.|-.++=.....++++|||.|++|+.+++.+..++..|.+.|.
T Consensus 7 ~l~~ese~~g~~Tl~~L~~QgEql~r~~~~ld~i~~~l~~a~k~L~ 52 (54)
T 1nhl_A 7 GLAIESQDAGIKTITMLDEQKEQLNRIEEGLDQINKDMRETEKTLT 52 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHhhHHHHHhHHHHHHhHHHHHHHHHh
Confidence 3344555555666778899999999999999999999999998874
No 25
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=95.70 E-value=0.0029 Score=50.02 Aligned_cols=43 Identities=19% Similarity=0.277 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhHHHHHHH
Q 047939 230 GIQEIQQQIGEVNEVFKDLAVLVHEQGTIIDDIGSHIENSQVA 272 (314)
Q Consensus 230 eI~~Ie~~I~eLneiF~dLa~lV~eQGe~ID~Ie~Nve~a~~~ 272 (314)
.+.++...+.|+..++.+==.-|-+.||-||.+++-.+.....
T Consensus 34 ~l~~vq~evdeVk~IM~~NIdkvLeRGEkLd~L~~KTe~L~~~ 76 (119)
T 2kog_A 34 RLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAG 76 (119)
T ss_dssp HHHHSSHHHHHHHHHHHHHHHHHHCCCCSSCCCCSCCSCCCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 3667777888888889888889999999999998766654433
No 26
>3b5n_C Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=95.30 E-value=0.1 Score=37.10 Aligned_cols=38 Identities=11% Similarity=0.227 Sum_probs=33.3
Q ss_pred HHHhhcchhHHHHHhhHHHHHHHHHHHHHHHHHHHHHh
Q 047939 250 VLVHEQGTIIDDIGSHIENSQVATAQGKSQLVKAAKTQ 287 (314)
Q Consensus 250 ~lV~eQGe~ID~Ie~Nve~a~~~v~~a~~~L~~A~~~q 287 (314)
.++.+|||.|++||.|++.+..+...|.+.|..-..+|
T Consensus 33 ~~L~~QgEqL~rtE~~ld~i~~~~k~aek~l~~Lk~~~ 70 (70)
T 3b5n_C 33 GMLGHQSEQLNNVEGNLDLMKVQNKVADEKVAELKKLQ 70 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 36789999999999999999999999999987766553
No 27
>1n7s_C SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1sfc_C 1urq_C 3hd7_C* 3hd9_C 3ipd_C 3rk2_C 3rk3_C 3rl0_C 1kil_C 1jth_A
Probab=94.65 E-value=0.31 Score=35.40 Aligned_cols=54 Identities=15% Similarity=0.215 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhHHHHHHHHHHHHHHHHH
Q 047939 229 LGIQEIQQQIGEVNEVFKDLAVLVHEQGTIIDDIGSHIENSQVATAQGKSQLVK 282 (314)
Q Consensus 229 ~eI~~Ie~~I~eLneiF~dLa~lV~eQGe~ID~Ie~Nve~a~~~v~~a~~~L~~ 282 (314)
+.+++..+-+.|-.++=.....++++||+.|++|+.+++.+..++..|.+.|..
T Consensus 23 ~s~~~~l~~a~Ete~~G~~Tl~~L~~Q~Eql~r~~~~ld~i~~~l~~a~k~L~~ 76 (79)
T 1n7s_C 23 ESTRRMLQLVEESKDAGIRTLVMLDEQGEQLDRVEEGMNHINQDMKEAEKNLKD 76 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHhHHHHHHHHHhh
Confidence 445666666777777888888899999999999999999999999999988864
No 28
>1l4a_C S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=93.03 E-value=0.11 Score=38.08 Aligned_cols=50 Identities=18% Similarity=0.236 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhHHHHHHHHHHHHHHH
Q 047939 231 IQEIQQQIGEVNEVFKDLAVLVHEQGTIIDDIGSHIENSQVATAQGKSQL 280 (314)
Q Consensus 231 I~~Ie~~I~eLneiF~dLa~lV~eQGe~ID~Ie~Nve~a~~~v~~a~~~L 280 (314)
.++.-+-+.+-.+.=..-..++..|||.|++|+.+++.+..+...|.+.|
T Consensus 29 Trr~l~l~~es~~~g~~Tl~~L~~QgEQL~rie~~ld~I~~dl~~Aek~L 78 (83)
T 1l4a_C 29 TRRMLNMCEESKEAGIRTLVMLDEQGEQLDRIEEGLDQINQDMKDAEKNL 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555556666889999999999999999999988876655
No 29
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=90.19 E-value=4.4 Score=29.93 Aligned_cols=19 Identities=16% Similarity=0.407 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 047939 224 IEERELGIQEIQQQIGEVN 242 (314)
Q Consensus 224 i~eR~~eI~~Ie~~I~eLn 242 (314)
+-+|.+.+..|..--.+|.
T Consensus 28 vL~RgekL~~L~~kt~~L~ 46 (91)
T 3hd7_A 28 VLERDQKLSELDDRADALQ 46 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHccchHHHHHHHHHHHH
Confidence 4555555555544444433
No 30
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=89.68 E-value=5.1 Score=29.91 Aligned_cols=87 Identities=10% Similarity=0.162 Sum_probs=58.6
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhhHHH
Q 047939 61 NGKQDSTQAVASGIFQINTAVSTFQRLVNTLGTPKDTPELREKIHKTRLHIGQLVKDTSAKLKQASETDHHAQVSADKKI 140 (314)
Q Consensus 61 ~~f~~~~~~i~~~I~~I~~~v~~L~~~~~~L~t~~D~~~lr~~I~~l~~~i~~l~~~~~~~lk~l~~~~~~~~~~r~~k~ 140 (314)
+||+...+++.+.|.++...+.. .+++ .+...+..+....+++...+..+.+.|.-+.+. ...+...|+.
T Consensus 6 DPF~~V~~D~~~ql~~l~~~~~~-------~~~~-~~~~~~~El~~~l~el~e~l~DL~~SI~i~e~~--~~~EI~~Rk~ 75 (95)
T 2c5k_T 6 DPFQQVVKDTKEQLNRINNYITR-------HNTA-GDDDQEEEIQDILKDVEETIVDLDRSIIVMKRD--ENEDVSGREA 75 (95)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH-------TCCC---CTTHHHHHHHHHHHHHHHHHHHHHHHHHHTS--TTCCCHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHH-------ccCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHH
Confidence 68999999999999998886443 2221 223456677777777777777777877766554 2334456777
Q ss_pred HHHHHHHHHHHHHHHHH
Q 047939 141 ADAKLAKDFQAVLKEFQ 157 (314)
Q Consensus 141 ~~~kL~~~f~~~l~~Fq 157 (314)
.+..+.+++..+-..++
T Consensus 76 ~v~~l~~~i~~lk~~~~ 92 (95)
T 2c5k_T 76 QVKNIKQQLDALKLRFD 92 (95)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 77778887766665553
No 31
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B
Probab=87.00 E-value=5 Score=27.76 Aligned_cols=53 Identities=11% Similarity=0.150 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhHHHHHHHHHHH
Q 047939 224 IEERELGIQEIQQQIGEVNEVFKDLAVLVHEQGTIIDDIGSHIENSQVATAQG 276 (314)
Q Consensus 224 i~eR~~eI~~Ie~~I~eLneiF~dLa~lV~eQGe~ID~Ie~Nve~a~~~v~~a 276 (314)
|.+=++.|.+|..-..+|..|..+=+.+|..=...++....||+.+...+.+|
T Consensus 14 i~~Ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA 66 (68)
T 1n7s_B 14 IIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKA 66 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555555555555555555555555555555555555555555554
No 32
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=85.39 E-value=6.9 Score=27.16 Aligned_cols=55 Identities=15% Similarity=0.159 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhHHHHHHHHHHHHH
Q 047939 224 IEERELGIQEIQQQIGEVNEVFKDLAVLVHEQGTIIDDIGSHIENSQVATAQGKS 278 (314)
Q Consensus 224 i~eR~~eI~~Ie~~I~eLneiF~dLa~lV~eQGe~ID~Ie~Nve~a~~~v~~a~~ 278 (314)
+.+=++.|.+|..-..+|..|..+=+.+|..=...++....||+.+...+.+|.+
T Consensus 12 i~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~ 66 (69)
T 3b5n_B 12 LLKLEKSMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQLDVEQGVGHTDKAVK 66 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555666666666666666666666666666666666666666666666653
No 33
>1sfc_A VAMP 2, protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=84.66 E-value=4.9 Score=30.04 Aligned_cols=44 Identities=18% Similarity=0.254 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhHHHHHHH
Q 047939 229 LGIQEIQQQIGEVNEVFKDLAVLVHEQGTIIDDIGSHIENSQVA 272 (314)
Q Consensus 229 ~eI~~Ie~~I~eLneiF~dLa~lV~eQGe~ID~Ie~Nve~a~~~ 272 (314)
..|.++...+.|+..|+.+==.-|-+.||-||.+++-.+.....
T Consensus 30 d~l~~vq~eldeVk~IM~~NI~kvLeRGEkLd~L~dkse~L~~~ 73 (96)
T 1sfc_A 30 RRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAG 73 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 35778888999999999999999999999999887766655443
No 34
>1gl2_C VTI1B, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=83.84 E-value=6.6 Score=27.01 Aligned_cols=52 Identities=13% Similarity=0.183 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhHHHHHHHHHHHHHHHHH
Q 047939 231 IQEIQQQIGEVNEVFKDLAVLVHEQGTIIDDIGSHIENSQVATAQGKSQLVK 282 (314)
Q Consensus 231 I~~Ie~~I~eLneiF~dLa~lV~eQGe~ID~Ie~Nve~a~~~v~~a~~~L~~ 282 (314)
+.+-.+-+.|--++=.+...-++.|+|.|.+...++..+..++..+.+-|..
T Consensus 11 l~~s~ri~~ETE~iG~~~l~~L~~QREql~~t~~~l~~~d~~l~~s~k~L~~ 62 (65)
T 1gl2_C 11 IERSHRIATETDQIGTEIIEELGEQRDQLERTKSRLVNTNENLSKSRKILRS 62 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHhHHHhHHhHHHHHHHHHHh
Confidence 3334444555556666667778999999999999999999999999887753
No 35
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=82.70 E-value=11 Score=29.71 Aligned_cols=66 Identities=6% Similarity=-0.036 Sum_probs=37.0
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 047939 61 NGKQDSTQAVASGIFQINTAVSTFQRLVNTLGTPK--DTPELREKIHKTRLHIGQLVKDTSAKLKQAS 126 (314)
Q Consensus 61 ~~f~~~~~~i~~~I~~I~~~v~~L~~~~~~L~t~~--D~~~lr~~I~~l~~~i~~l~~~~~~~lk~l~ 126 (314)
+||....++|...|..++.....-.++...-+++. +-..++.+|......+...+..+.+.|.-+.
T Consensus 27 DPF~~Vk~EVq~sl~~l~~l~~~w~~l~~~~~~~s~~E~~~~~~EL~~~l~sie~dLeDLe~sI~ivE 94 (130)
T 4dnd_A 27 DPFFVVRGEVQKAVNTARGLYQRWCELLQESAAVGREELDWTTNELRNGLRSIEWDLEDLEETIGIVE 94 (130)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999997776665554333321 1223344454444444444455555544443
No 36
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B
Probab=82.36 E-value=10 Score=26.83 Aligned_cols=61 Identities=13% Similarity=0.126 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 047939 224 IEERELGIQEIQQQIGEVNEVFKDLAVLVHEQGTIIDDIGSHIENSQVATAQGKSQLVKAA 284 (314)
Q Consensus 224 i~eR~~eI~~Ie~~I~eLneiF~dLa~lV~eQGe~ID~Ie~Nve~a~~~v~~a~~~L~~A~ 284 (314)
|.+=++.|.+|..-..||..|..+=+.+|..=...++....||+.+...+.+|.+.-++++
T Consensus 12 i~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~q~~~r 72 (77)
T 1jth_B 12 IIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKAR 72 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5666677888888888888888888888888888888888888888888888876655443
No 37
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=81.80 E-value=7.5 Score=26.63 Aligned_cols=54 Identities=9% Similarity=0.240 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhHHHHHHHHHHHH
Q 047939 224 IEERELGIQEIQQQIGEVNEVFKDLAVLVHEQGTIIDDIGSHIENSQVATAQGK 277 (314)
Q Consensus 224 i~eR~~eI~~Ie~~I~eLneiF~dLa~lV~eQGe~ID~Ie~Nve~a~~~v~~a~ 277 (314)
|.+=++.|.+|..-..||..|..+=+.+|..=...+++...||+.+...+.+|.
T Consensus 11 i~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~ 64 (65)
T 1gl2_B 11 IRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVESAEVHVQQANQQLSRAA 64 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 445555666666667777777777777777666777777777777776666654
No 38
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B
Probab=77.98 E-value=16 Score=26.15 Aligned_cols=56 Identities=11% Similarity=0.122 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhHHHHHHHHHHHHHH
Q 047939 224 IEERELGIQEIQQQIGEVNEVFKDLAVLVHEQGTIIDDIGSHIENSQVATAQGKSQ 279 (314)
Q Consensus 224 i~eR~~eI~~Ie~~I~eLneiF~dLa~lV~eQGe~ID~Ie~Nve~a~~~v~~a~~~ 279 (314)
|.+=++.|.+|..-..||..|..+=+.+|..=...++....||+.+...+.+|.+.
T Consensus 23 i~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~~ 78 (83)
T 1sfc_B 23 IIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKY 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666777777777888888888888888777778888888888888888777654
No 39
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=76.59 E-value=14 Score=25.65 Aligned_cols=60 Identities=15% Similarity=0.211 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhHHHHHHHHHHHHHHHHHH
Q 047939 224 IEERELGIQEIQQQIGEVNEVFKDLAVLVHEQGTIIDDIGSHIENSQVATAQGKSQLVKA 283 (314)
Q Consensus 224 i~eR~~eI~~Ie~~I~eLneiF~dLa~lV~eQGe~ID~Ie~Nve~a~~~v~~a~~~L~~A 283 (314)
|.+=++.|.+|..-..||..|..+=+.+|..=...++....||+.+...+.+|...-+++
T Consensus 8 i~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~~qk~~ 67 (71)
T 2nps_B 8 IQQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERASDQLQRAAYYQKKS 67 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 566667888999999999999999999999999999999999999999999998765544
No 40
>3ajm_A Programmed cell death protein 10; adaptor protein, dimerization, four-helix bundle, apoptosis; HET: 4IP; 2.30A {Homo sapiens} PDB: 3l8i_A 3rqe_A 3rqf_A 3rqg_A 3l8j_A
Probab=65.04 E-value=41 Score=28.63 Aligned_cols=27 Identities=19% Similarity=0.161 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047939 138 KKIADAKLAKDFQAVLKEFQKAQRLAA 164 (314)
Q Consensus 138 ~k~~~~kL~~~f~~~l~~Fq~~Q~~~~ 164 (314)
.+..++..+++|-.-.++|...-+.|=
T Consensus 149 ~k~~le~~KreFVkySKrFS~TLKeYF 175 (213)
T 3ajm_A 149 NRRALEHQKKEFVKYSKSFSDTLKTYF 175 (213)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHhhHHHHHHH
Confidence 344556666777777777776666654
No 41
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=62.62 E-value=27 Score=22.37 Aligned_cols=27 Identities=22% Similarity=0.287 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047939 141 ADAKLAKDFQAVLKEFQKAQRLAAERE 167 (314)
Q Consensus 141 ~~~kL~~~f~~~l~~Fq~~Q~~~~~r~ 167 (314)
..+.|..+|..++.+|...|.+.+.|-
T Consensus 13 ~ld~LqTr~ArLlae~~ssq~KlKqRi 39 (46)
T 3swy_A 13 SLDTLQTRFARLLAEYNATQMKMKQRL 39 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367899999999999999999988763
No 42
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=58.69 E-value=52 Score=31.92 Aligned_cols=26 Identities=15% Similarity=0.059 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047939 140 IADAKLAKDFQAVLKEFQKAQRLAAE 165 (314)
Q Consensus 140 ~~~~kL~~~f~~~l~~Fq~~Q~~~~~ 165 (314)
.++..|+..+.+...+-|+++..+.-
T Consensus 131 snIrvLQsnLedq~~kIQRLEvDIdi 156 (562)
T 3ghg_A 131 QHIQLLQKNVRAQLVDMKRLEVDIDI 156 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777777777777666543
No 43
>2nps_C Vesicle transport through interaction with T- snares homolog 1A; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=57.61 E-value=49 Score=23.58 Aligned_cols=58 Identities=7% Similarity=0.052 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 047939 229 LGIQEIQQQIGEVNEVFKDLAVLVHEQGTIIDDIGSHIENSQVATAQGKSQLVKAAKT 286 (314)
Q Consensus 229 ~eI~~Ie~~I~eLneiF~dLa~lV~eQGe~ID~Ie~Nve~a~~~v~~a~~~L~~A~~~ 286 (314)
+-+.+-.+-+.|=.+|=.++..-+..|.|.|.+....+..+..++..+.+-|..-.+.
T Consensus 19 ~~L~~s~r~~~ETE~iG~~il~~L~~QRE~l~~~~~~l~~~d~~l~~s~k~l~~M~rr 76 (81)
T 2nps_C 19 RRLEAGYQIAVETEQIGQEMLENLSHDRERIQRARERLRETDANLGKSSRILTGMLRR 76 (81)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHhHHHHHHHHHHHHHHH
Confidence 3456666667777777777778889999999999999999999999999888766543
No 44
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=53.70 E-value=26 Score=24.77 Aligned_cols=27 Identities=22% Similarity=0.325 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047939 141 ADAKLAKDFQAVLKEFQKAQRLAAERE 167 (314)
Q Consensus 141 ~~~kL~~~f~~~l~~Fq~~Q~~~~~r~ 167 (314)
.++.|.++|..++.+|...|.+.+.|-
T Consensus 15 sld~LQTrfARLLaEy~ssQ~KLKqRi 41 (74)
T 3swf_A 15 SVDLLQTRFARILAEYESMQQKLKQRL 41 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999988763
No 45
>3n27_A Fusion glycoprotein F0, linker, fusion glycoprote; fusion protein, chimera protein, fusion inhibitor, antivirus viral protein; HET: CIT; 1.80A {Hendravirus}
Probab=51.77 E-value=53 Score=23.44 Aligned_cols=61 Identities=16% Similarity=0.244 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 047939 224 IEERELGIQEIQQQIGEVNEVFKDLAVLVHEQGTIIDDIGSHIENSQVATAQGKSQLVKAAKT 286 (314)
Q Consensus 224 i~eR~~eI~~Ie~~I~eLneiF~dLa~lV~eQGe~ID~Ie~Nve~a~~~v~~a~~~L~~A~~~ 286 (314)
|++-++.|.+|-.+...+--..+-+..-|+.+|.. .|.-|+..+....+.....|.+++..
T Consensus 15 Iq~TN~AV~eL~~a~~~t~iAIqaIQd~IN~~~~~--dis~~l~~a~~~l~~sk~~~~~~~~~ 75 (80)
T 3n27_A 15 IESTNEAVVKLQETAEKTVYVLTALQDYSGGSGGI--DISIELNKAKSDLEESKEWIRRSNQK 75 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSCC-----CH--HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCc--chhhhHhHHHhhHHHHHHHHHHHHHH
Confidence 66777777777777777777777777777777764 46667778888888888888877643
No 46
>1n7s_A Vesicle-associated membrane protein 2; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1kil_A 3rk2_A 3rk3_A 3rl0_A 3fii_B 3g94_B
Probab=49.21 E-value=57 Score=21.85 Aligned_cols=44 Identities=18% Similarity=0.254 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhHHHHHHH
Q 047939 229 LGIQEIQQQIGEVNEVFKDLAVLVHEQGTIIDDIGSHIENSQVA 272 (314)
Q Consensus 229 ~eI~~Ie~~I~eLneiF~dLa~lV~eQGe~ID~Ie~Nve~a~~~ 272 (314)
..|.++...+.|+..|+.+=-.-|-+.|+-||.+++-.+.....
T Consensus 4 d~l~~v~~~l~ev~~iM~~NI~~vl~RGekLd~L~~ks~~L~~~ 47 (63)
T 1n7s_A 4 RRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAG 47 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 35788899999999999999999999999999887665554443
No 47
>1gl2_A Endobrevin; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=49.20 E-value=59 Score=22.01 Aligned_cols=43 Identities=12% Similarity=0.278 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhHHHHHH
Q 047939 229 LGIQEIQQQIGEVNEVFKDLAVLVHEQGTIIDDIGSHIENSQV 271 (314)
Q Consensus 229 ~eI~~Ie~~I~eLneiF~dLa~lV~eQGe~ID~Ie~Nve~a~~ 271 (314)
..|.++...+.|+..|+.+==.-|-+.|+-||.+.+-.+....
T Consensus 9 d~l~~vq~~l~evk~iM~~NI~~vL~RgekLd~L~~ks~~L~~ 51 (65)
T 1gl2_A 9 DRVRNLQSEVEGVKNIMTQNVERILARGENLDHLRNKTEDLEA 51 (65)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3477888889999999988888888999999888765554443
No 48
>2nps_A VAMP-4, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Mus musculus}
Probab=48.76 E-value=64 Score=22.41 Aligned_cols=42 Identities=26% Similarity=0.395 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhHHHHHHH
Q 047939 231 IQEIQQQIGEVNEVFKDLAVLVHEQGTIIDDIGSHIENSQVA 272 (314)
Q Consensus 231 I~~Ie~~I~eLneiF~dLa~lV~eQGe~ID~Ie~Nve~a~~~ 272 (314)
|.++...+.|+..|+.+==.-|-+.|+-||.+.+-.+.....
T Consensus 10 l~~vq~el~ev~~iM~~NI~~vL~RgekLd~L~~ks~~L~~~ 51 (74)
T 2nps_A 10 IKHVQNQVDEVIDVMQENITKVIERGERLDELQDKSESLSDN 51 (74)
T ss_dssp SHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 566777788888888888888888999998887665554443
No 49
>3zx6_A HAMP, methyl-accepting chemotaxis protein I; signaling, HAMP domain, TSR receptor, fusion; 2.65A {Archaeoglobus fulgidus}
Probab=45.99 E-value=1.6e+02 Score=26.42 Aligned_cols=59 Identities=20% Similarity=0.312 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhHHHHHHHHHHHHHHHH
Q 047939 223 IIEERELGIQEIQQQIGEVNEVFKDLAVLVHEQGTIIDDIGSHIENSQVATAQGKSQLV 281 (314)
Q Consensus 223 ~i~eR~~eI~~Ie~~I~eLneiF~dLa~lV~eQGe~ID~Ie~Nve~a~~~v~~a~~~L~ 281 (314)
.+.+=.+.+.+|...+.++.+.+.+++.-+.+|...++.|..+++....-+++....+.
T Consensus 221 ~~~~~~~~~~~i~~~~~~i~~~~~~i~~~~~~~~~~~~~i~~~i~~i~~~~~~~~~~~~ 279 (341)
T 3zx6_A 221 LVESAGETMAEIVSAVTRVTDIMGEIASASDEQSRGIDQVGLAVAEMDRVTQQNAALVE 279 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566677889999999999999999999999999999999888887766665544443
No 50
>4g2k_A General control protein GCN4, envelope glycoprote chimera; GP2-GCN4 fusion, viral protein; 1.90A {Saccharomyces cerevisiae}
Probab=45.68 E-value=1e+02 Score=23.77 Aligned_cols=29 Identities=21% Similarity=0.523 Sum_probs=25.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 047939 63 KQDSTQAVASGIFQINTAVSTFQRLVNTL 91 (314)
Q Consensus 63 f~~~~~~i~~~I~~I~~~v~~L~~~~~~L 91 (314)
..+.++++-+.++.+...+..|++++..|
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~L 47 (125)
T 4g2k_A 19 IEDKIEEILSKIYHIENEIARIKKLIGNL 47 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 46788899999999999999999998866
No 51
>3b5n_A Synaptobrevin homolog 1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=43.65 E-value=70 Score=21.28 Aligned_cols=42 Identities=24% Similarity=0.341 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhHHHHHH
Q 047939 230 GIQEIQQQIGEVNEVFKDLAVLVHEQGTIIDDIGSHIENSQV 271 (314)
Q Consensus 230 eI~~Ie~~I~eLneiF~dLa~lV~eQGe~ID~Ie~Nve~a~~ 271 (314)
.|.++...+.|+..|+.+=-.-|-+.|+-||.+.+-.+....
T Consensus 3 ~l~~vq~~l~evk~iM~~NI~~vl~RgekLd~L~~ks~~L~~ 44 (61)
T 3b5n_A 3 RTAELQAEIDDTVGIMRDNINKVAERGERLTSIEDKADNLAV 44 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 477888999999999999888899999999988766554443
No 52
>2lif_A Core protein P21; signal peptide, E1 envelope protein, transmemb membrane protein, viral protein; NMR {Hepatitis c virus jfh-1}
Probab=48.34 E-value=5.3 Score=22.63 Aligned_cols=19 Identities=53% Similarity=0.796 Sum_probs=14.0
Q ss_pred hhhh-hhhhccccccchhHH
Q 047939 8 SFPI-ILAEFSCIPVGLSAI 26 (314)
Q Consensus 8 ~~~~-~~~~~~~~~~~~~~~ 26 (314)
|||| +||=|||+-+..||+
T Consensus 5 sfsiFlLaLlscLt~Pasa~ 24 (27)
T 2lif_A 5 PFSIFLLALLSCITVPVSAA 24 (27)
Confidence 4554 567799998888774
No 53
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=41.61 E-value=2.2e+02 Score=26.44 Aligned_cols=23 Identities=17% Similarity=0.258 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 047939 67 TQAVASGIFQINTAVSTFQRLVN 89 (314)
Q Consensus 67 ~~~i~~~I~~I~~~v~~L~~~~~ 89 (314)
-..+...|.+|+.+|..+.+.++
T Consensus 62 er~~~~rIe~L~~~L~~~s~s~~ 84 (390)
T 1deq_A 62 DQDFTSRINKLRDSLFNYQKNSK 84 (390)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhh
Confidence 34555556666666655555443
No 54
>1urq_A M-tomosyn isoform; transport protein, tomosyn-snare complex, exocytosis, four helical bundle, coiled coil; 2.0A {Rattus norvegicus} SCOP: h.1.15.1
Probab=41.36 E-value=81 Score=21.36 Aligned_cols=43 Identities=12% Similarity=0.201 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhHHHHHHHH
Q 047939 231 IQEIQQQIGEVNEVFKDLAVLVHEQGTIIDDIGSHIENSQVAT 273 (314)
Q Consensus 231 I~~Ie~~I~eLneiF~dLa~lV~eQGe~ID~Ie~Nve~a~~~v 273 (314)
|..+...+.++..++.+=-.-|.+-|+-|+.+++=.+......
T Consensus 6 i~~v~~qv~ev~~iM~~ni~kvlERGekL~~L~dkT~~L~~~A 48 (63)
T 1urq_A 6 IEGVKGAASGVVGELARARLALDERGQKLSDLEERTAAMMSSA 48 (63)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777888888888888888888888888876555544433
No 55
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=40.09 E-value=5.7e+02 Score=30.77 Aligned_cols=54 Identities=15% Similarity=0.179 Sum_probs=35.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhHHHHHHHHHHHHHHH
Q 047939 220 NEAIIEERELGIQEIQQQIGEVNEVFKDLAVLVHEQGTIIDDIGSHIENSQVATAQGKSQL 280 (314)
Q Consensus 220 ~e~~i~eR~~eI~~Ie~~I~eLneiF~dLa~lV~eQGe~ID~Ie~Nve~a~~~v~~a~~~L 280 (314)
.++.+++-..++.+++..+..|.+-|.+.- .+ -..++..++.+...++.|.+=+
T Consensus 2026 ~~~~L~~~~~~L~~le~~l~~L~~~~~~~~---~e----k~~L~~e~~~~~~kl~rA~~Li 2079 (3245)
T 3vkg_A 2026 LKLKQDEIVATITALEKSIATYKEEYATLI---RE----TEQIKTESSKVKNKVDRSIALL 2079 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 334567777889999999888887776543 33 2455566666666666665543
No 56
>3fym_A Putative uncharacterized protein; HTH DNA binding, DNA binding protein; 1.00A {Staphylococcus aureus subsp}
Probab=39.39 E-value=6.3 Score=30.74 Aligned_cols=7 Identities=29% Similarity=0.145 Sum_probs=0.0
Q ss_pred hhhHHHH
Q 047939 291 SSLTCLL 297 (314)
Q Consensus 291 rk~~~~l 297 (314)
+.+.+.+
T Consensus 103 ~~~~~~~ 109 (130)
T 3fym_A 103 KEPIQLL 109 (130)
T ss_dssp -------
T ss_pred hhHHHHH
Confidence 3334433
No 57
>1qu7_A Methyl-accepting chemotaxis protein I; serine, four helical-bundle, signaling protein; 2.60A {Escherichia coli} SCOP: h.4.5.1
Probab=39.37 E-value=1.2e+02 Score=25.68 Aligned_cols=57 Identities=21% Similarity=0.317 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhHHHHHHHHHHHHHHH
Q 047939 224 IEERELGIQEIQQQIGEVNEVFKDLAVLVHEQGTIIDDIGSHIENSQVATAQGKSQL 280 (314)
Q Consensus 224 i~eR~~eI~~Ie~~I~eLneiF~dLa~lV~eQGe~ID~Ie~Nve~a~~~v~~a~~~L 280 (314)
+.+=...+..|...+.++..++.+++..+.+|...++.|..++.....-+++.....
T Consensus 142 ~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~i~~i~~~~~~~~~~~ 198 (227)
T 1qu7_A 142 VESAGETMAEIVSAVTRVTDIMGEIASASDEQSRGIDQVGLAVAEMDRVTQQNAALV 198 (227)
T ss_dssp HHHHTTHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556788889999999999999999999999999999988888776665544333
No 58
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=39.20 E-value=62 Score=22.94 Aligned_cols=45 Identities=7% Similarity=0.077 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhHHHHHHHHHH
Q 047939 231 IQEIQQQIGEVNEVFKDLAVLVHEQGTIIDDIGSHIENSQVATAQ 275 (314)
Q Consensus 231 I~~Ie~~I~eLneiF~dLa~lV~eQGe~ID~Ie~Nve~a~~~v~~ 275 (314)
|.+||..+.-.-....+|+..|.+|...||....-+......+..
T Consensus 16 i~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~ 60 (78)
T 3efg_A 16 LVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGK 60 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666777777777777777778888888888887777666665544
No 59
>2beq_A E2 glycoprotein; viral protein, coiled coil, membrane fusion, viral entry, envelope protein, signal, transmembrane, virulence; 1.6A {Sars coronavirus PUMC03} SCOP: h.3.3.1
Probab=38.65 E-value=38 Score=20.73 Aligned_cols=32 Identities=13% Similarity=0.296 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcchhHHHHH
Q 047939 232 QEIQQQIGEVNEVFKDLAVLVHEQGTIIDDIG 263 (314)
Q Consensus 232 ~~Ie~~I~eLneiF~dLa~lV~eQGe~ID~Ie 263 (314)
.++.+++.-++.-+..+...|++||..+...-
T Consensus 2 ~q~~~g~~tv~~AL~KiQ~VVN~q~~aL~~Lt 33 (38)
T 2beq_A 2 SQIQESLTTTSTALGKLQDVVNQNAQALNTLV 33 (38)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 45677888888888999999999998887653
No 60
>1lyp_A CAP18; lipopolysaccharide-binding protein; NMR {Oryctolagus cuniculus} SCOP: j.17.1.1
Probab=35.37 E-value=61 Score=18.24 Aligned_cols=26 Identities=27% Similarity=0.414 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047939 100 LREKIHKTRLHIGQLVKDTSAKLKQA 125 (314)
Q Consensus 100 lr~~I~~l~~~i~~l~~~~~~~lk~l 125 (314)
+|.++......+++..+.+.++|..+
T Consensus 2 lrkrlrkfrnkikeklkkigqkiqgl 27 (32)
T 1lyp_A 2 LRKRLRKFRNKIKEKLKKIGQKIQGL 27 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 56666666667777777777666554
No 61
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=34.99 E-value=1.2e+02 Score=21.80 Aligned_cols=27 Identities=4% Similarity=0.188 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 047939 143 AKLAKDFQAVLKEFQKAQRLAAERETA 169 (314)
Q Consensus 143 ~kL~~~f~~~l~~Fq~~Q~~~~~r~k~ 169 (314)
..+..++..+-.+|..+.....+|.+.
T Consensus 81 ~~i~~~l~~l~~rw~~L~~~~~~R~~~ 107 (119)
T 3uun_A 81 TEVQEQMNLLNSRWECLRVASMEKQSN 107 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777778888888888887776543
No 62
>1l4a_A Synaptobrevin; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=31.99 E-value=83 Score=22.20 Aligned_cols=42 Identities=21% Similarity=0.294 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhHHHHHH
Q 047939 230 GIQEIQQQIGEVNEVFKDLAVLVHEQGTIIDDIGSHIENSQV 271 (314)
Q Consensus 230 eI~~Ie~~I~eLneiF~dLa~lV~eQGe~ID~Ie~Nve~a~~ 271 (314)
.|.++...+.|+..|+.+=-.-|-+.||-||.+++-.+....
T Consensus 16 ~l~~vq~el~ev~~iM~~NI~~vLeRGekLd~L~~kt~~L~~ 57 (80)
T 1l4a_A 16 RLQQTQAQVEEVVDIMRVNVDKVLERDSKISELDDRADALQA 57 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 366777778888888888888888999999888766554433
No 63
>1pi7_A VPU protein, U ORF protein; alpha helix, viral protein; NMR {Human immunodeficiency virus 1} SCOP: j.35.1.1 PDB: 1pi8_A 1pje_A 2gof_A 2goh_A 2jpx_A
Probab=31.47 E-value=29 Score=21.00 Aligned_cols=8 Identities=13% Similarity=0.476 Sum_probs=3.3
Q ss_pred HHHHHHhC
Q 047939 307 ILVVVLAA 314 (314)
Q Consensus 307 Ivl~vv~~ 314 (314)
.++.+|+|
T Consensus 15 lIiaIVVW 22 (36)
T 1pi7_A 15 IIIAIVVW 22 (36)
T ss_pred HHHHHHHH
Confidence 33344444
No 64
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=30.02 E-value=35 Score=24.33 Aligned_cols=18 Identities=33% Similarity=0.312 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHhC
Q 047939 297 LLVIFGIVLLILVVVLAA 314 (314)
Q Consensus 297 l~ii~~Ivl~Ivl~vv~~ 314 (314)
+.+++.|+++.+++.++|
T Consensus 15 ~gvi~gilliGllllliw 32 (79)
T 2knc_B 15 LSVMGAILLIGLAALLIW 32 (79)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444444
No 65
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=29.82 E-value=1.2e+02 Score=22.24 Aligned_cols=31 Identities=10% Similarity=0.006 Sum_probs=27.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 047939 62 GKQDSTQAVASGIFQINTAVSTFQRLVNTLG 92 (314)
Q Consensus 62 ~f~~~~~~i~~~I~~I~~~v~~L~~~~~~L~ 92 (314)
-|.+++++....+...+..|.++++.+..+.
T Consensus 9 yF~~lv~~fe~rL~~Yr~~IeelE~~L~s~s 39 (93)
T 3t98_B 9 YFRVLVQQFEVQLQQYRQQIEELENHLATQA 39 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3789999999999999999999999887654
No 66
>2jqq_A Conserved oligomeric golgi complex subunit 2; protein, helical bundle, vesicular transport, tethering, protein transport; NMR {Saccharomyces cerevisiae}
Probab=29.79 E-value=1.7e+02 Score=24.54 Aligned_cols=55 Identities=18% Similarity=0.304 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 047939 106 KTRLHIGQLVKDTSAKLKQASETDHHAQVSADKKIADAKLAKDFQAVLKEFQKAQRLAAERETA 169 (314)
Q Consensus 106 ~l~~~i~~l~~~~~~~lk~l~~~~~~~~~~r~~k~~~~kL~~~f~~~l~~Fq~~Q~~~~~r~k~ 169 (314)
.++.++-.++.++...+..++..+ +|- +..++++|+.+++.||-.-+-.-+|+-.
T Consensus 131 ~l~~qL~~L~~~~~~ll~~l~dl~--Sp~-------l~h~RN~yq~i~q~Fqi~lk~LtdkClE 185 (204)
T 2jqq_A 131 GLIEQLYKLITASRRILESCADSN--SPY-------IHHLRNDYQDLLQEFQISLKILTEKCLE 185 (204)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCSCC--CHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC--cHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344455555666666666665443 222 4567899999999999998888887643
No 67
>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis}
Probab=29.61 E-value=85 Score=27.46 Aligned_cols=215 Identities=8% Similarity=0.091 Sum_probs=110.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCC----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCc-hhh-hHH-
Q 047939 67 TQAVASGIFQINTAVSTFQRLVNTLGTP----KDTPELREKIHKTRLHIGQLVKDTSAKLKQASETDHHAQ-VSA-DKK- 139 (314)
Q Consensus 67 ~~~i~~~I~~I~~~v~~L~~~~~~L~t~----~D~~~lr~~I~~l~~~i~~l~~~~~~~lk~l~~~~~~~~-~~r-~~k- 139 (314)
..+....+..|...+..|...+..|... ..++...+ -..+..++..+...++..++.+...-..-. ..+ ...
T Consensus 43 ~~~F~~~~~~I~~~I~~i~~~l~~L~~l~~~~l~t~~~~~-~~~~~~~ie~l~~~i~~~~~~i~~~lk~l~~~~~~~~~~ 121 (279)
T 2xhe_B 43 MADFFNRVKRIRDNIEDIEQAIEQVAQLHTESLVAVSKED-RDRLNEKLQDTMARISALGNKIRADLKQIEKENKRAQQE 121 (279)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSSTTHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3456667778888888888887766432 22233222 123555666666666666666654321000 000 000
Q ss_pred -------H--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCcccccccccCccchHHHHHHHHHHHHHHH
Q 047939 140 -------I--ADAKLAKDFQAVLKEFQKAQRLAAERETAYTPFVPQAVLPSSYTAHELDISSDRSAEQHALLVESRRQEV 210 (314)
Q Consensus 140 -------~--~~~kL~~~f~~~l~~Fq~~Q~~~~~r~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~eqq~l~~~~~~q~~ 210 (314)
. ...--......+..+|+.+-..|....+.|....... ..-.+........+ ...+ .++.....+..
T Consensus 122 ~~~~~~~~~~e~r~~k~~~~~L~~~f~~~~~~Fq~~Q~~y~e~~k~~-~~R~~~i~~~~~~~-ee~~--~~~e~g~~~~f 197 (279)
T 2xhe_B 122 GTFEDGTVSTDLRIRQSQHSSLSRKFVKVMTRYNDVQAENKRRYGEN-VARQCRVVEPSLSD-DAIQ--KVIEHGTEGIF 197 (279)
T ss_dssp HCCSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TTTSCCSSCCCCSS-TTHH--HHHHHC-----
T ss_pred ccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhCCCCCH-HHHH--HHHhCCchHHH
Confidence 0 1112345667788899999999988766655422110 00001100011111 1111 23321111111
Q ss_pred HHHhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 047939 211 VLLDNEIAFNEAIIEERELGIQEIQQQIGEVNEVFKDLAVLVHEQGTIIDDIGSHIENSQVATAQGKSQLVKAAKTQRSN 290 (314)
Q Consensus 211 ~~~~~E~~~~e~~i~eR~~eI~~Ie~~I~eLneiF~dLa~lV~eQGe~ID~Ie~Nve~a~~~v~~a~~~L~~A~~~qk~~ 290 (314)
.. ... ...+.-..+|++=++.|..|..=..+|+.|..+=+.+|..=..-|+.+..||+.+...+.+|...-+++
T Consensus 198 ~q----~~~--~~~~~~~~~i~eR~~eI~~Ie~~i~el~~if~dla~lV~~Qg~~id~Ie~nv~~~~~~v~~~~~~l~kA 271 (279)
T 2xhe_B 198 SG----MRL--EGAEAKLNEIRDRHKDIQQLERSLLELHEMFTDMSTLVASQGEMIDRIEFSVEQSHNYVKKATEQVVQA 271 (279)
T ss_dssp ------------------CTTTHHHHHHHHHHHHHHHHHHHHHHHHTTTTTSCSSTTCHHHHHHTCCCCC----------
T ss_pred HH----HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 10 011 112223346777788999999999999999999999999888999999999999999999998876655
Q ss_pred hh
Q 047939 291 SS 292 (314)
Q Consensus 291 rk 292 (314)
.+
T Consensus 272 ~~ 273 (279)
T 2xhe_B 272 RH 273 (279)
T ss_dssp --
T ss_pred HH
Confidence 43
No 68
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=28.19 E-value=1.3e+02 Score=19.70 Aligned_cols=32 Identities=22% Similarity=0.319 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 047939 75 FQINTAVSTFQRLVNTLGTPKDTPELREKIHK 106 (314)
Q Consensus 75 ~~I~~~v~~L~~~~~~L~t~~D~~~lr~~I~~ 106 (314)
..+...+..|+..++.||...--.++..+-+.
T Consensus 5 kaleekvkaleekvkalggggrieelkkkwee 36 (67)
T 1lq7_A 5 KALEEKVKALEEKVKALGGGGRIEELKKKWEE 36 (67)
T ss_dssp HHHHHHHHHHHHHHHHSCCSSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 34455666666666667655433334433333
No 69
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=28.12 E-value=45 Score=22.06 Aligned_cols=19 Identities=32% Similarity=0.546 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHhC
Q 047939 296 LLLVIFGIVLLILVVVLAA 314 (314)
Q Consensus 296 ~l~ii~~Ivl~Ivl~vv~~ 314 (314)
++.++..++++.+++.++|
T Consensus 13 i~svl~GLLLL~Lii~~Lw 31 (54)
T 2l8s_A 13 LLSAFAGLLLLMLLILALW 31 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444
No 70
>2ww9_B Protein transport protein SSS1; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_B
Probab=27.71 E-value=28 Score=25.01 Aligned_cols=27 Identities=15% Similarity=0.161 Sum_probs=15.5
Q ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 047939 258 IIDDIGSHIENSQVATAQGKSQLVKAA 284 (314)
Q Consensus 258 ~ID~Ie~Nve~a~~~v~~a~~~L~~A~ 284 (314)
|.|.++.-++...+.++....=|+.|+
T Consensus 14 ~~d~~~~~~e~~~~f~kd~~rvlk~~~ 40 (80)
T 2ww9_B 14 SNNQVEKLVEAPVEFVREGTQFLAKCK 40 (80)
T ss_dssp -------CCHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 457777777888888888877777664
No 71
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=27.12 E-value=48 Score=21.93 Aligned_cols=17 Identities=29% Similarity=0.383 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHhC
Q 047939 298 LVIFGIVLLILVVVLAA 314 (314)
Q Consensus 298 ~ii~~Ivl~Ivl~vv~~ 314 (314)
.++..++++.+++.++|
T Consensus 18 svl~GLllL~li~~~Lw 34 (54)
T 2knc_A 18 GVLGGLLLLTILVLAMW 34 (54)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33334444444444443
No 72
>3f6n_A Virion-associated protein; coiled-coil, viral protein, tetramer, DNA-binding, D binding protein; 3.10A {Cauliflower mosaic virus}
Probab=27.03 E-value=1.5e+02 Score=22.78 Aligned_cols=28 Identities=11% Similarity=0.217 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 047939 66 STQAVASGIFQINTAVSTFQRLVNTLGT 93 (314)
Q Consensus 66 ~~~~i~~~I~~I~~~v~~L~~~~~~L~t 93 (314)
...+|...+..+.....+++.+.+.+|.
T Consensus 7 i~~ei~e~~~~i~~l~~~Ik~il~~~~s 34 (129)
T 3f6n_A 7 IQKEVSEILSDQKSMKADIKAILELLGS 34 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3444444455555555555555555555
No 73
>3c98_B Syntaxin-1A; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus}
Probab=26.78 E-value=1.1e+02 Score=25.88 Aligned_cols=63 Identities=13% Similarity=0.137 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 047939 224 IEERELGIQEIQQQIGEVNEVFKDLAVLVHEQGTIIDDIGSHIENSQVATAQGKSQLVKAAKT 286 (314)
Q Consensus 224 i~eR~~eI~~Ie~~I~eLneiF~dLa~lV~eQGe~ID~Ie~Nve~a~~~v~~a~~~L~~A~~~ 286 (314)
+.+=...|.+|...+.+|..+-.+-+.++.+=...++.+..+++.+...+.+|...-.++++.
T Consensus 214 i~~I~~~i~ei~~~~~~ia~~v~eQ~~~~~~I~~nv~~~~~~v~~~~~el~~A~~~q~~~Rkk 276 (279)
T 3c98_B 214 IIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRK 276 (279)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHCSGGGCHHHHHHTCCCCCCCCC----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 566667888999999999999999999999888889999999999999999998776666543
No 74
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=25.10 E-value=2.6e+02 Score=22.24 Aligned_cols=48 Identities=13% Similarity=0.156 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 047939 75 FQINTAVSTFQRLVNTLGTPKDTPE-LREKIHKTRLHIGQLVKDTSAKL 122 (314)
Q Consensus 75 ~~I~~~v~~L~~~~~~L~t~~D~~~-lr~~I~~l~~~i~~l~~~~~~~l 122 (314)
..|-.+...|+.+++.|++..-+.+ -..+|..+..+....-++....+
T Consensus 64 ~dli~kakqIe~LIdsLPg~~~seeeQ~~ri~~Le~E~~~~~~el~~~v 112 (151)
T 1yke_B 64 TDIILKTRQINKLIDSLPGVDVSAEEQLRKIDMLQKKLVEVEDEKIEAI 112 (151)
T ss_dssp HHHHHHHHHHHHHHHHCTTSSSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455678888888876654432 33455555444444444444333
No 75
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=24.46 E-value=1.5e+02 Score=19.28 Aligned_cols=29 Identities=10% Similarity=0.184 Sum_probs=17.3
Q ss_pred hhHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 047939 257 TIIDDIGSHIENSQVATAQGKSQLVKAAK 285 (314)
Q Consensus 257 e~ID~Ie~Nve~a~~~v~~a~~~L~~A~~ 285 (314)
..||.+...|......+..|..+-.+|..
T Consensus 18 ~kVdqLssdV~al~~~v~~ak~eA~RAN~ 46 (52)
T 1jcd_A 18 AKADQASNDANAARSDAQAAKDDAARANQ 46 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666666666666666666654
No 76
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=24.26 E-value=2.5e+02 Score=21.74 Aligned_cols=57 Identities=12% Similarity=0.148 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 047939 68 QAVASGIFQINTAVSTFQRLVNTLGTPKDTPE-LREKIHKTRLHIGQLVKDTSAKLKQ 124 (314)
Q Consensus 68 ~~i~~~I~~I~~~v~~L~~~~~~L~t~~D~~~-lr~~I~~l~~~i~~l~~~~~~~lk~ 124 (314)
..+...-..|-.+...|+.+++.|+...-+.+ -..+|..+..+....-++....+++
T Consensus 57 ~~~~ela~dli~k~kqIe~LIdsLP~~~~see~Q~~ri~~L~~E~~~~~~el~~~v~e 114 (132)
T 1ykh_B 57 NTIDELSTDIILKTRQINKLIDSLPGVDVSAEEQLRKIDMLQKKLVEVEDEKIEAIKK 114 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334445556778889999987764433 3456666665555555555555543
No 77
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=24.11 E-value=1.6e+02 Score=21.27 Aligned_cols=27 Identities=7% Similarity=0.181 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 047939 143 AKLAKDFQAVLKEFQKAQRLAAERETA 169 (314)
Q Consensus 143 ~kL~~~f~~~l~~Fq~~Q~~~~~r~k~ 169 (314)
..+..++..+-.+|..+.....+|.+.
T Consensus 81 ~~i~~~l~~l~~rw~~L~~~~~~R~~~ 107 (118)
T 3uul_A 81 FEIQEQMTLLNARWEALRVESMERQSR 107 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777777888888888887776543
No 78
>3fym_A Putative uncharacterized protein; HTH DNA binding, DNA binding protein; 1.00A {Staphylococcus aureus subsp}
Probab=22.96 E-value=18 Score=28.05 Aligned_cols=20 Identities=10% Similarity=0.197 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 047939 294 TCLLLVIFGIVLLILVVVLA 313 (314)
Q Consensus 294 ~~~l~ii~~Ivl~Ivl~vv~ 313 (314)
+.++..++++.+++++++++
T Consensus 103 ~~~~~~~i~~~~~i~i~~~~ 122 (130)
T 3fym_A 103 KEPIQLLVIMGITVLITLLL 122 (130)
T ss_dssp --------------------
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 34444444443333333333
No 79
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=22.29 E-value=1.7e+02 Score=19.00 Aligned_cols=46 Identities=11% Similarity=0.078 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhHHHHHHHHHHH
Q 047939 231 IQEIQQQIGEVNEVFKDLAVLVHEQGTIIDDIGSHIENSQVATAQG 276 (314)
Q Consensus 231 I~~Ie~~I~eLneiF~dLa~lV~eQGe~ID~Ie~Nve~a~~~v~~a 276 (314)
+.++++.+.++++.+...-....+.-.-+++...++..+.+++..=
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~ 52 (60)
T 3htk_A 7 KKTLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKK 52 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555544444444444444444444444444454444433
No 80
>1z23_A CRK-associated substrate; four-helix bundle, cell adhesion; NMR {Rattus norvegicus}
Probab=21.92 E-value=2.4e+02 Score=22.88 Aligned_cols=102 Identities=14% Similarity=0.127 Sum_probs=59.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC---CchhhhHH
Q 047939 63 KQDSTQAVASGIFQINTAVSTFQRLVNTLGTPKDTPELREKIHKTRLHIGQLVKDTSAKLKQASETDHH---AQVSADKK 139 (314)
Q Consensus 63 f~~~~~~i~~~I~~I~~~v~~L~~~~~~L~t~~D~~~lr~~I~~l~~~i~~l~~~~~~~lk~l~~~~~~---~~~~r~~k 139 (314)
.....+.+...=+++...|+.|-.++...|...+-....+.++....+++..+..++..++.+-.+.++ ....-..+
T Consensus 9 ld~A~E~L~rLQ~~v~~sVs~Ll~fv~s~~~~~~WR~~~~~le~~i~~i~~a~~~v~~Sl~efL~Farga~~nA~~~~d~ 88 (163)
T 1z23_A 9 LEVAVETLARLQQGVSTTVAHLLDLVGSASGPGGWRSTSEPQEPPVQDLKAAVAAVHGAVHELLEFARSAVSSATHTSDR 88 (163)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCSSCCSSSSCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcCccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Confidence 344556666666666777777777776654332211000123444455566677777777777655321 01112334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 047939 140 IADAKLAKDFQAVLKEFQKAQRLAA 164 (314)
Q Consensus 140 ~~~~kL~~~f~~~l~~Fq~~Q~~~~ 164 (314)
+-+.+|++.++.+-..|+-+.....
T Consensus 89 ~L~~kl~r~Lq~l~ds~qiL~~~~~ 113 (163)
T 1z23_A 89 TLHAKLSRQLQKMEDVYQTLVVHGQ 113 (163)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 5577888999888888888876644
No 81
>2l6w_A Beta-type platelet-derived growth factor receptor; transmembrane helix, receptor tyrosine kinase, heptad repeat membrane protein; NMR {Homo sapiens}
Probab=26.53 E-value=20 Score=22.00 Aligned_cols=6 Identities=0% Similarity=0.335 Sum_probs=2.3
Q ss_pred HHHHhC
Q 047939 309 VVVLAA 314 (314)
Q Consensus 309 l~vv~~ 314 (314)
++++.|
T Consensus 27 iLi~~w 32 (39)
T 2l6w_A 27 ILIMLW 32 (39)
Confidence 333444
No 82
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=20.91 E-value=79 Score=19.69 Aligned_cols=17 Identities=29% Similarity=0.383 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHhC
Q 047939 298 LVIFGIVLLILVVVLAA 314 (314)
Q Consensus 298 ~ii~~Ivl~Ivl~vv~~ 314 (314)
.++..++++.+++.++|
T Consensus 16 s~l~GLllL~li~~~Lw 32 (42)
T 2k1a_A 16 GVLGGLLLLTILVLAMW 32 (42)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33334444444444433
No 83
>1vk8_A Hypothetical protein TM0486; protein with possible role in cell WALL biogenesis, structur genomics, joint center for structural genomics; HET: UNL; 1.80A {Thermotoga maritima} SCOP: d.58.48.1
Probab=20.82 E-value=13 Score=28.23 Aligned_cols=17 Identities=18% Similarity=0.462 Sum_probs=12.5
Q ss_pred hhhhhhhhhhccccccc
Q 047939 6 HFSFPIILAEFSCIPVG 22 (314)
Q Consensus 6 ~~~~~~~~~~~~~~~~~ 22 (314)
|--.|..+++|+.+|.|
T Consensus 10 ~~~~~~~iv~~sv~Plg 26 (106)
T 1vk8_A 10 HHHMPKVTVSIKVVPAV 26 (106)
T ss_dssp ----CCEEEEEEEEESS
T ss_pred cccCCeEEEEEEEEeCC
Confidence 56689999999999998
No 84
>1pp9_D Cytochrome C-1, cytochrome C1, heme protein, mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: a.3.1.3 f.23.11.1 PDB: 1bgy_D* 1be3_D* 1l0n_D* 1ntk_D* 1ntm_D* 1ntz_D* 1nu1_D* 1l0l_D* 1ppj_D* 1sqb_D* 1sqp_D* 1sqq_D* 1sqv_D* 1sqx_D* 2a06_D* 2fyu_D* 2ybb_D* 1bcc_D* 2bcc_D* 3bcc_D* ...
Probab=20.01 E-value=1.3e+02 Score=26.10 Aligned_cols=41 Identities=20% Similarity=0.104 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHH
Q 047939 269 SQVATAQGKSQLVKAAKTQRSNSSLTCLLLVIFGIVLLILV 309 (314)
Q Consensus 269 a~~~v~~a~~~L~~A~~~qk~~rk~~~~l~ii~~Ivl~Ivl 309 (314)
+...+..-..-|.++.+-.+..||++-+-++++++|+.+++
T Consensus 179 ~~q~a~Dvv~FL~w~aEP~~~~Rk~~G~~vl~fL~il~~l~ 219 (241)
T 1pp9_D 179 MSQVAKDVCTFLRWAAEPEHDHRKRMGLKMLLMMGLLLPLV 219 (241)
T ss_dssp HHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555667888888888888887665555555554444
Done!