Query 047942
Match_columns 132
No_of_seqs 122 out of 1065
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 04:47:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047942.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047942hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0356 Mitochondrial chaperon 100.0 1.1E-35 2.4E-40 256.7 14.5 129 2-130 345-477 (550)
2 PRK12852 groEL chaperonin GroE 100.0 1.6E-32 3.4E-37 239.5 16.4 130 1-130 330-462 (545)
3 PRK14104 chaperonin GroEL; Pro 100.0 2.4E-32 5.2E-37 238.7 16.5 130 1-130 330-462 (546)
4 PRK00013 groEL chaperonin GroE 100.0 7E-32 1.5E-36 235.6 16.4 130 1-130 329-461 (542)
5 PRK12851 groEL chaperonin GroE 100.0 7E-32 1.5E-36 235.5 16.3 130 1-130 330-462 (541)
6 PRK12850 groEL chaperonin GroE 100.0 9.6E-32 2.1E-36 234.7 16.5 130 1-130 330-462 (544)
7 TIGR02348 GroEL chaperonin Gro 100.0 1.4E-31 3E-36 232.6 16.5 130 1-130 328-460 (524)
8 PRK12849 groEL chaperonin GroE 100.0 1.4E-31 3E-36 233.7 16.3 130 1-130 329-461 (542)
9 CHL00093 groEL chaperonin GroE 100.0 1.5E-31 3.4E-36 232.6 16.1 129 1-130 330-463 (529)
10 cd03344 GroEL GroEL_like type 100.0 2.3E-31 4.9E-36 231.3 16.5 130 1-130 327-459 (520)
11 PTZ00114 Heat shock protein 60 100.0 6.6E-31 1.4E-35 229.8 16.3 129 2-130 343-477 (555)
12 PLN03167 Chaperonin-60 beta su 100.0 1E-30 2.2E-35 230.7 14.6 129 2-130 385-518 (600)
13 COG0459 GroL Chaperonin GroEL 99.9 6.5E-24 1.4E-28 185.3 9.7 109 21-130 334-449 (524)
14 TIGR02345 chap_CCT_eta T-compl 99.8 1.2E-20 2.5E-25 163.9 3.3 106 25-130 340-454 (522)
15 cd03342 TCP1_zeta TCP-1 (CTT o 99.8 1.2E-18 2.5E-23 150.3 10.3 85 46-130 328-417 (484)
16 cd03336 TCP1_beta TCP-1 (CTT o 99.8 6.4E-19 1.4E-23 152.9 7.1 94 37-130 346-448 (517)
17 TIGR02340 chap_CCT_alpha T-com 99.8 1.7E-18 3.8E-23 150.8 9.7 84 47-130 368-456 (536)
18 cd03338 TCP1_delta TCP-1 (CTT 99.8 2.4E-18 5.1E-23 149.0 10.0 86 45-130 360-450 (515)
19 TIGR02346 chap_CCT_theta T-com 99.8 2.3E-18 4.9E-23 150.1 9.8 87 44-130 361-452 (531)
20 cd03335 TCP1_alpha TCP-1 (CTT 99.8 3.3E-18 7.1E-23 148.7 10.6 86 45-130 362-452 (527)
21 TIGR02347 chap_CCT_zeta T-comp 99.8 3E-18 6.4E-23 149.6 10.3 85 46-130 371-460 (531)
22 PTZ00212 T-complex protein 1 s 99.8 2.8E-18 6E-23 149.6 9.8 87 44-130 369-460 (533)
23 TIGR02341 chap_CCT_beta T-comp 99.8 1E-18 2.2E-23 151.9 7.1 93 38-130 348-449 (519)
24 cd03341 TCP1_theta TCP-1 (CTT 99.8 4E-18 8.6E-23 146.6 9.7 86 45-130 314-404 (472)
25 TIGR02342 chap_CCT_delta T-com 99.7 5.4E-18 1.2E-22 147.2 9.9 87 44-130 360-451 (517)
26 cd03339 TCP1_epsilon TCP-1 (CT 99.7 7.9E-18 1.7E-22 146.3 10.3 85 46-130 372-461 (526)
27 cd03343 cpn60 cpn60 chaperonin 99.7 5.9E-18 1.3E-22 146.4 9.2 84 47-130 363-451 (517)
28 cd00309 chaperonin_type_I_II c 99.7 2.8E-17 6.1E-22 140.3 10.5 86 45-130 310-400 (464)
29 TIGR02344 chap_CCT_gamma T-com 99.7 2.7E-17 5.9E-22 142.8 10.3 84 47-130 367-455 (525)
30 TIGR02343 chap_CCT_epsi T-comp 99.7 2.5E-17 5.4E-22 143.7 10.0 84 47-130 377-465 (532)
31 TIGR02339 thermosome_arch ther 99.7 1E-16 2.2E-21 139.1 9.7 84 47-130 366-454 (519)
32 cd03340 TCP1_eta TCP-1 (CTT or 99.7 4.5E-17 9.7E-22 141.4 7.1 83 48-130 367-453 (522)
33 cd03337 TCP1_gamma TCP-1 (CTT 99.7 1.5E-16 3.3E-21 137.1 9.6 84 47-130 326-414 (480)
34 PF00118 Cpn60_TCP1: TCP-1/cpn 99.6 1.4E-15 3E-20 128.8 8.1 88 43-130 327-419 (485)
35 KOG0357 Chaperonin complex com 99.2 4.4E-11 9.5E-16 100.2 7.6 87 45-131 240-330 (400)
36 KOG0361 Chaperonin complex com 99.2 9.3E-11 2E-15 100.1 7.9 100 31-130 349-457 (543)
37 KOG0359 Chaperonin complex com 99.0 3E-09 6.5E-14 91.6 9.1 86 45-130 362-451 (520)
38 KOG0358 Chaperonin complex com 98.9 3.2E-09 6.8E-14 90.7 6.3 85 47-131 381-469 (534)
39 KOG0363 Chaperonin complex com 98.8 5.2E-09 1.1E-13 89.1 6.0 94 37-130 351-453 (527)
40 KOG0362 Chaperonin complex com 98.6 8.5E-08 1.8E-12 83.6 6.7 83 48-130 369-455 (537)
41 KOG0360 Chaperonin complex com 98.5 5.9E-07 1.3E-11 78.2 8.1 84 47-130 375-462 (545)
42 KOG0364 Chaperonin complex com 98.2 1.6E-06 3.4E-11 75.2 4.6 93 39-131 355-456 (527)
43 cd03333 chaperonin_like chaper 94.8 0.04 8.6E-07 42.3 3.9 32 46-77 175-209 (209)
44 PF08717 nsp8: nsp8 replicase; 82.5 1 2.2E-05 35.5 2.2 63 15-83 33-118 (199)
45 cd03334 Fab1_TCP TCP-1 like do 81.0 2.3 5E-05 34.2 3.9 32 47-78 221-254 (261)
46 PF10805 DUF2730: Protein of u 77.0 3.2 7E-05 29.2 3.2 38 12-49 46-83 (106)
47 cd04240 AAK_UC AAK_UC: Unchara 71.2 3.6 7.8E-05 31.9 2.4 41 49-91 1-44 (203)
48 cd04239 AAK_UMPK-like AAK_UMPK 68.0 36 0.00078 26.4 7.5 40 48-87 2-50 (229)
49 PRK14736 atpC F0F1 ATP synthas 67.3 14 0.0003 27.1 4.7 39 9-47 90-128 (133)
50 cd04255 AAK_UMPK-MosAB AAK_UMP 67.0 44 0.00095 27.0 8.0 46 42-87 27-76 (262)
51 TIGR00103 DNA_YbaB_EbfC DNA-bi 63.7 47 0.001 23.1 6.9 40 7-55 4-49 (102)
52 PF10498 IFT57: Intra-flagella 60.8 46 0.00099 28.4 7.3 93 9-108 253-353 (359)
53 PF09021 HutP: HutP; InterPro 59.6 29 0.00063 25.6 5.2 63 17-83 2-65 (130)
54 COG3972 Superfamily I DNA and 59.1 10 0.00022 34.5 3.2 104 18-124 104-227 (660)
55 cd00088 HPT Histidine Phosphot 58.2 49 0.0011 21.5 7.6 59 12-72 11-69 (94)
56 TIGR01216 ATP_synt_epsi ATP sy 57.4 29 0.00064 24.9 4.9 35 9-43 88-122 (130)
57 cd04252 AAK_NAGK-fArgBP AAK_NA 56.8 35 0.00076 27.1 5.7 47 48-94 1-48 (248)
58 PRK00358 pyrH uridylate kinase 54.1 16 0.00034 28.4 3.2 40 48-87 3-52 (231)
59 KOG2391 Vacuolar sorting prote 53.7 1.5E+02 0.0032 25.7 9.3 22 60-81 311-332 (365)
60 TIGR00255 conserved hypothetic 53.0 86 0.0019 26.0 7.6 66 10-79 156-240 (291)
61 PRK00153 hypothetical protein; 52.3 76 0.0017 21.9 7.7 39 8-55 3-47 (104)
62 cd04242 AAK_G5K_ProB AAK_G5K_P 51.0 79 0.0017 24.9 6.9 39 49-87 3-50 (251)
63 PF07820 TraC: TraC-like prote 50.9 33 0.00072 24.0 4.1 31 9-44 3-33 (92)
64 PRK10884 SH3 domain-containing 50.7 80 0.0017 24.9 6.7 14 78-91 173-186 (206)
65 PF04822 Takusan: Takusan; In 50.4 45 0.00097 22.8 4.6 36 10-47 13-49 (84)
66 PF06698 DUF1192: Protein of u 50.1 24 0.00052 22.7 3.0 20 10-29 23-42 (59)
67 TIGR02076 pyrH_arch uridylate 49.0 1.2E+02 0.0026 23.3 8.4 38 49-86 2-44 (221)
68 cd04236 AAK_NAGS-Urea AAK_NAGS 48.9 34 0.00073 28.0 4.5 57 31-87 14-80 (271)
69 PRK11820 hypothetical protein; 47.9 88 0.0019 25.9 6.8 65 10-79 154-237 (288)
70 PRK04531 acetylglutamate kinas 47.2 64 0.0014 27.8 6.1 70 20-92 10-84 (398)
71 KOG0972 Huntingtin interacting 46.4 1.9E+02 0.004 24.8 8.5 100 10-116 261-366 (384)
72 cd04253 AAK_UMPK-PyrH-Pf AAK_U 46.1 21 0.00045 27.6 2.8 38 49-86 3-45 (221)
73 PF12277 DUF3618: Protein of u 46.1 34 0.00075 20.7 3.2 28 8-40 3-30 (49)
74 PF10410 DnaB_bind: DnaB-helic 45.6 65 0.0014 19.2 5.1 38 8-45 16-53 (59)
75 PLN02512 acetylglutamate kinas 45.0 58 0.0012 26.8 5.4 45 40-87 42-92 (309)
76 cd02115 AAK Amino Acid Kinases 43.2 1.3E+02 0.0027 23.0 6.8 43 49-92 1-47 (248)
77 PRK00571 atpC F0F1 ATP synthas 43.0 66 0.0014 23.2 4.9 35 8-42 89-123 (135)
78 PF04316 FlgM: Anti-sigma-28 f 42.8 55 0.0012 20.2 3.9 33 10-42 23-55 (57)
79 TIGR02075 pyrH_bact uridylate 42.3 34 0.00075 26.7 3.5 42 48-89 4-55 (233)
80 CHL00202 argB acetylglutamate 42.3 1.6E+02 0.0034 23.9 7.4 54 40-94 18-75 (284)
81 PF00696 AA_kinase: Amino acid 41.0 30 0.00065 26.5 3.0 40 47-87 2-46 (242)
82 KOG3633 BAG family molecular c 40.0 73 0.0016 25.3 4.9 45 11-55 52-118 (219)
83 TIGR01890 N-Ac-Glu-synth amino 39.1 53 0.0012 28.0 4.4 47 40-89 12-63 (429)
84 PRK14558 pyrH uridylate kinase 38.2 31 0.00066 26.9 2.6 39 48-86 3-51 (231)
85 TIGR01837 PHA_granule_1 poly(h 37.3 70 0.0015 22.8 4.2 13 34-46 77-89 (118)
86 PRK13446 atpC F0F1 ATP synthas 36.4 1E+02 0.0022 22.4 5.0 33 9-41 90-122 (136)
87 smart00574 POX domain associat 34.7 1.3E+02 0.0027 22.7 5.3 60 29-97 68-127 (140)
88 PF04977 DivIC: Septum formati 34.1 1E+02 0.0022 19.4 4.3 32 10-43 19-50 (80)
89 CHL00063 atpE ATP synthase CF1 33.3 1.2E+02 0.0026 22.0 4.9 34 9-42 88-121 (134)
90 PRK05782 bifunctional sirohydr 33.0 1.1E+02 0.0025 25.9 5.4 61 9-78 143-205 (335)
91 PF01402 RHH_1: Ribbon-helix-h 32.5 74 0.0016 17.5 3.0 32 10-41 7-38 (39)
92 COG2054 Uncharacterized archae 32.3 44 0.00095 26.6 2.6 45 49-96 3-47 (212)
93 PF09454 Vps23_core: Vps23 cor 32.1 72 0.0016 20.6 3.2 26 56-81 16-41 (65)
94 PRK00942 acetylglutamate kinas 32.0 91 0.002 25.0 4.5 45 40-87 18-68 (283)
95 PF08232 Striatin: Striatin fa 31.1 62 0.0013 23.7 3.1 56 18-77 12-71 (134)
96 COG5570 Uncharacterized small 30.9 1.2E+02 0.0026 19.3 3.9 18 56-73 37-54 (57)
97 PRK05429 gamma-glutamyl kinase 30.9 2.4E+02 0.0053 23.8 7.1 40 47-86 10-58 (372)
98 COG5509 Uncharacterized small 30.6 55 0.0012 21.4 2.4 18 11-28 28-45 (65)
99 PF12535 Nudix_N: Hydrolase of 30.3 53 0.0011 20.8 2.3 31 15-46 9-40 (58)
100 cd01709 RT_like_1 RT_like_1: A 30.1 50 0.0011 28.3 2.8 35 9-43 196-231 (346)
101 KOG3495 Mitochondrial F1F0-ATP 29.8 98 0.0021 19.3 3.3 26 103-128 14-39 (50)
102 PRK13881 conjugal transfer pro 29.5 92 0.002 27.8 4.3 39 8-46 179-217 (472)
103 cd04254 AAK_UMPK-PyrH-Ec UMP k 29.3 59 0.0013 25.3 2.9 40 48-87 3-52 (231)
104 PF06102 DUF947: Domain of unk 29.2 92 0.002 23.7 3.9 64 13-80 61-124 (168)
105 KOG1981 SOK1 kinase belonging 28.5 59 0.0013 29.3 3.0 28 14-41 229-256 (513)
106 PRK00888 ftsB cell division pr 28.3 1.4E+02 0.0031 20.9 4.4 36 9-46 28-63 (105)
107 cd04250 AAK_NAGK-C AAK_NAGK-C: 28.1 1.2E+02 0.0027 24.2 4.7 47 40-87 9-59 (279)
108 cd07606 BAR_SFC_plant The Bin/ 27.5 2E+02 0.0044 22.5 5.6 90 32-125 9-100 (202)
109 PRK10132 hypothetical protein; 27.1 2.3E+02 0.005 20.1 5.6 58 9-77 6-63 (108)
110 PRK10404 hypothetical protein; 27.0 48 0.001 23.2 1.8 22 56-77 35-56 (101)
111 KOG0837 Transcriptional activa 26.8 2.6E+02 0.0056 23.3 6.3 56 20-78 212-271 (279)
112 PF14000 Packaging_FI: DNA pac 26.3 72 0.0016 23.5 2.7 19 7-25 23-41 (125)
113 TIGR03702 lip_kinase_YegS lipi 26.1 1.7E+02 0.0038 23.3 5.2 57 2-59 4-67 (293)
114 COG3765 WzzB Chain length dete 25.8 77 0.0017 27.2 3.2 82 10-92 255-342 (347)
115 PRK13848 conjugal transfer pro 25.7 1.5E+02 0.0032 21.0 4.0 59 10-78 5-63 (98)
116 COG1163 DRG Predicted GTPase [ 25.5 1.2E+02 0.0026 26.2 4.3 31 13-43 4-38 (365)
117 COG0355 AtpC F0F1-type ATP syn 25.3 1.9E+02 0.004 21.3 4.8 36 9-44 91-130 (135)
118 cd03146 GAT1_Peptidase_E Type 25.2 3.1E+02 0.0068 20.9 7.0 16 79-96 85-100 (212)
119 PRK00539 atpC F0F1 ATP synthas 25.1 1.9E+02 0.0042 21.0 4.8 33 9-41 90-122 (133)
120 PF10153 DUF2361: Uncharacteri 24.8 1.3E+02 0.0028 21.7 3.7 16 31-46 59-74 (114)
121 PRK14557 pyrH uridylate kinase 24.2 1.5E+02 0.0032 23.7 4.4 41 48-88 7-57 (247)
122 PRK05279 N-acetylglutamate syn 24.1 1.1E+02 0.0024 26.2 3.9 48 40-89 20-71 (441)
123 TIGR03824 FlgM_jcvi flagellar 23.9 1.2E+02 0.0026 20.5 3.3 28 13-40 64-91 (95)
124 PRK14623 hypothetical protein; 23.5 2.8E+02 0.006 19.7 7.0 22 34-55 18-45 (106)
125 COG2082 CobH Precorrin isomera 23.3 1.4E+02 0.0029 23.9 4.0 65 8-81 6-74 (210)
126 cd04241 AAK_FomA-like AAK_FomA 23.2 1.7E+02 0.0037 22.8 4.6 8 48-55 2-9 (252)
127 PF11471 Sugarporin_N: Maltopo 23.2 1.9E+02 0.0041 18.4 3.9 20 9-28 26-45 (60)
128 PF05015 Plasmid_killer: Plasm 23.0 83 0.0018 21.3 2.4 48 8-55 21-72 (93)
129 cd04246 AAK_AK-DapG-like AAK_A 22.3 3.7E+02 0.0081 20.8 7.3 38 48-85 2-42 (239)
130 COG2247 LytB Putative cell wal 21.9 89 0.0019 26.7 2.8 10 46-55 100-109 (337)
131 PF09304 Cortex-I_coil: Cortex 21.8 1.9E+02 0.004 20.8 4.0 29 10-38 53-81 (107)
132 PF10444 Nbl1_Borealin_N: Nbl1 21.7 1.7E+02 0.0036 18.2 3.4 31 12-43 13-43 (59)
133 COG1842 PspA Phage shock prote 21.2 2.6E+02 0.0056 22.3 5.2 54 11-66 123-177 (225)
134 TIGR02003 PTS-II-BC-unk1 PTS s 20.9 81 0.0017 28.5 2.5 46 4-55 480-526 (548)
135 COG1561 Uncharacterized stress 20.8 4.4E+02 0.0096 22.1 6.6 27 56-82 216-242 (290)
136 KOG3436 60S ribosomal protein 20.8 1.5E+02 0.0033 21.8 3.4 11 38-48 31-41 (123)
137 PRK07535 methyltetrahydrofolat 20.8 3.4E+02 0.0075 21.8 5.9 64 1-72 1-65 (261)
138 PF07352 Phage_Mu_Gam: Bacteri 20.7 1.5E+02 0.0033 21.6 3.6 10 63-72 92-101 (149)
139 KOG4460 Nuclear pore complex, 20.6 3E+02 0.0065 25.6 5.9 54 10-73 583-644 (741)
140 PF15178 TOM_sub5: Mitochondri 20.6 2.3E+02 0.0049 17.6 3.8 33 56-95 12-45 (51)
141 PRK00488 pheS phenylalanyl-tRN 20.4 2.8E+02 0.0061 23.6 5.5 66 10-77 2-81 (339)
142 PF01923 Cob_adeno_trans: Coba 20.3 59 0.0013 24.3 1.3 74 12-85 34-112 (163)
No 1
>KOG0356 consensus Mitochondrial chaperonin, Cpn60/Hsp60p [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-35 Score=256.70 Aligned_cols=129 Identities=30% Similarity=0.457 Sum_probs=125.1
Q ss_pred EEecCCCCHHHHHHHHHHHHHHhHhhcChHHHHHHHHHHHHhcCcceEEeeCCc---chhhhHhHHHHHHHHHHHHhhcc
Q 047942 2 VILGGAGSQSAIEERHSQLRSAIELSTSGYEVKLLKQRLHYLSNTAAVFKVGPC---KLPDKLNGARLTLEAVKRTMDQK 78 (132)
Q Consensus 2 ~ii~g~g~~~~i~~r~~~l~~~i~~~~~~~~~~~L~eRlarL~ggvavI~VGg~---Ei~erk~ri~dAlna~~aAl~~G 78 (132)
+|+.|.+++++++.||+||+..++.++++|++++|+||+++|+||+|||+|||. |++|||+|++||||++++|+++|
T Consensus 345 ~ll~g~~~~~~v~~rIeqik~~~e~t~~~ye~ekl~er~a~ls~gvavi~vGg~se~Ev~ekk~rv~dalnat~aaveeG 424 (550)
T KOG0356|consen 345 MLLKGKGNKAQVEGRIEQIKEMIEETTSDYEKEKLNERLAKLSGGVAVIKVGGHSEVEVNEKKDRVEDALNATRAAVEEG 424 (550)
T ss_pred eeeCCCCCHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHhcCCeEEEEecCcchhhhhhhhhhHHHHHHHHHHHhhcC
Confidence 588999999999999999999999999999999999999999999999999999 99999999999999999999999
Q ss_pred ccCCchHHHHHHHHHHhhhcc-CcHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 047942 79 IGPGAGIALLHVSKELDKLQS-ANVGANISIKLFQHALKVFFTPYCNSVTVYF 130 (132)
Q Consensus 79 iVpGGG~all~a~~~L~~~~~-~~~~e~~Gi~iv~~AL~~p~~~ia~NaG~~~ 130 (132)
||||||++|++|++.|+++.. .+.+++.|++||++||..|+++|++|||+|-
T Consensus 425 ivpGGG~all~~~~~l~~lk~~~~~~~k~G~eiv~~Al~~P~~~IakNAGvdg 477 (550)
T KOG0356|consen 425 IVPGGGTALLRAIPVLDELKATNNFDQKVGVEIVKKALRLPAQTIAKNAGVDG 477 (550)
T ss_pred cccCCchHHHHhhhhhhhcccccchHhhhhHHHHHHHHhhhHHHHHHhcCCch
Confidence 999999999999999999887 5889999999999999999999999999873
No 2
>PRK12852 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=1.6e-32 Score=239.53 Aligned_cols=130 Identities=28% Similarity=0.451 Sum_probs=124.8
Q ss_pred CEEecCCCCHHHHHHHHHHHHHHhHhhcChHHHHHHHHHHHHhcCcceEEeeCCc---chhhhHhHHHHHHHHHHHHhhc
Q 047942 1 MVILGGAGSQSAIEERHSQLRSAIELSTSGYEVKLLKQRLHYLSNTAAVFKVGPC---KLPDKLNGARLTLEAVKRTMDQ 77 (132)
Q Consensus 1 ~~ii~g~g~~~~i~~r~~~l~~~i~~~~~~~~~~~L~eRlarL~ggvavI~VGg~---Ei~erk~ri~dAlna~~aAl~~ 77 (132)
+++++|.+++++|..|+++|+.++++++++|++++|+|||+||+|++++|.+||+ +++|++++++||+|++++|+++
T Consensus 330 ~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~~R~~~l~~~~~tI~irG~t~~~l~E~er~i~DAl~a~~~a~~~ 409 (545)
T PRK12852 330 TTIVNGAGKKADIEARVGQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKEKKDRVEDALNATRAAVQE 409 (545)
T ss_pred EEEEeCCCCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4788999999999999999999999999999999999999999999999999998 9999999999999999999999
Q ss_pred cccCCchHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 047942 78 KIGPGAGIALLHVSKELDKLQSANVGANISIKLFQHALKVFFTPYCNSVTVYF 130 (132)
Q Consensus 78 GiVpGGG~all~a~~~L~~~~~~~~~e~~Gi~iv~~AL~~p~~~ia~NaG~~~ 130 (132)
|||||||++++++++.|+++...++++++|+++|++||+.|+++||+|||+|-
T Consensus 410 g~VpGGGa~e~~~s~~L~~~~~~~~~~q~~i~~~a~AL~~ip~~La~NaG~d~ 462 (545)
T PRK12852 410 GIVPGGGVALLRAKKAVGRINNDNADVQAGINIVLKALEAPIRQIAENAGVEG 462 (545)
T ss_pred CCCcCchHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 99999999999999999987666778999999999999999999999999983
No 3
>PRK14104 chaperonin GroEL; Provisional
Probab=100.00 E-value=2.4e-32 Score=238.67 Aligned_cols=130 Identities=26% Similarity=0.419 Sum_probs=124.7
Q ss_pred CEEecCCCCHHHHHHHHHHHHHHhHhhcChHHHHHHHHHHHHhcCcceEEeeCCc---chhhhHhHHHHHHHHHHHHhhc
Q 047942 1 MVILGGAGSQSAIEERHSQLRSAIELSTSGYEVKLLKQRLHYLSNTAAVFKVGPC---KLPDKLNGARLTLEAVKRTMDQ 77 (132)
Q Consensus 1 ~~ii~g~g~~~~i~~r~~~l~~~i~~~~~~~~~~~L~eRlarL~ggvavI~VGg~---Ei~erk~ri~dAlna~~aAl~~ 77 (132)
+++++|.+++++|..|+++|+.++++++++|++++|+|||+||+|++++|.|||+ +++|++++|+||+|++++++++
T Consensus 330 ~~~i~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~eRi~~l~~~~atI~irG~t~~~l~e~~r~i~Dal~a~~~ai~~ 409 (546)
T PRK14104 330 TTIVNGAGKKADIEARVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKERKDRVDDAMHATRAAVEE 409 (546)
T ss_pred EEEEeCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4788999999999999999999999999999999999999999999999999998 9999999999999999999999
Q ss_pred cccCCchHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 047942 78 KIGPGAGIALLHVSKELDKLQSANVGANISIKLFQHALKVFFTPYCNSVTVYF 130 (132)
Q Consensus 78 GiVpGGG~all~a~~~L~~~~~~~~~e~~Gi~iv~~AL~~p~~~ia~NaG~~~ 130 (132)
|||||||+++++++..|+++...++++++|+++|++||+.|+++|++|+|+|-
T Consensus 410 g~VpGGGa~e~~~s~~L~~~~~~~~~~~~~i~~~a~Al~~ip~~La~NaG~d~ 462 (546)
T PRK14104 410 GIVPGGGVALLRASEQLKGIKTKNDDQKTGVEIVRKALSAPARQIAINAGEDG 462 (546)
T ss_pred CcCcCchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhhHHHHHHhCCCCH
Confidence 99999999999999999987555789999999999999999999999999973
No 4
>PRK00013 groEL chaperonin GroEL; Reviewed
Probab=99.98 E-value=7e-32 Score=235.59 Aligned_cols=130 Identities=29% Similarity=0.450 Sum_probs=124.0
Q ss_pred CEEecCCCCHHHHHHHHHHHHHHhHhhcChHHHHHHHHHHHHhcCcceEEeeCCc---chhhhHhHHHHHHHHHHHHhhc
Q 047942 1 MVILGGAGSQSAIEERHSQLRSAIELSTSGYEVKLLKQRLHYLSNTAAVFKVGPC---KLPDKLNGARLTLEAVKRTMDQ 77 (132)
Q Consensus 1 ~~ii~g~g~~~~i~~r~~~l~~~i~~~~~~~~~~~L~eRlarL~ggvavI~VGg~---Ei~erk~ri~dAlna~~aAl~~ 77 (132)
++++.|.+++++|..|+++|+.++++++++||+++|+||++||+|++++|.+||. +++|++++++||++++++|+++
T Consensus 329 ~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~eRi~~l~g~~~tI~irG~t~~~l~E~er~i~Dal~~vk~al~~ 408 (542)
T PRK00013 329 TTIVDGAGDKEAIKARVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIKVGAATEVEMKEKKDRVEDALHATRAAVEE 408 (542)
T ss_pred EEEEeCCCCHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3688899999999999999999999999999999999999999999999999998 9999999999999999999999
Q ss_pred cccCCchHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 047942 78 KIGPGAGIALLHVSKELDKLQSANVGANISIKLFQHALKVFFTPYCNSVTVYF 130 (132)
Q Consensus 78 GiVpGGG~all~a~~~L~~~~~~~~~e~~Gi~iv~~AL~~p~~~ia~NaG~~~ 130 (132)
|||||||++++++++.|+++...++++++|+++|++||+.|+++||+|||+|-
T Consensus 409 g~VpGGGa~e~~~s~~L~~~~~~~~~~~~~i~~~a~Al~~ip~~La~NaG~d~ 461 (542)
T PRK00013 409 GIVPGGGVALLRAAPALEALKGLNGDEATGINIVLRALEAPLRQIAENAGLEG 461 (542)
T ss_pred CcccCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 99999999999999999988334789999999999999999999999999984
No 5
>PRK12851 groEL chaperonin GroEL; Reviewed
Probab=99.98 E-value=7e-32 Score=235.47 Aligned_cols=130 Identities=32% Similarity=0.486 Sum_probs=124.5
Q ss_pred CEEecCCCCHHHHHHHHHHHHHHhHhhcChHHHHHHHHHHHHhcCcceEEeeCCc---chhhhHhHHHHHHHHHHHHhhc
Q 047942 1 MVILGGAGSQSAIEERHSQLRSAIELSTSGYEVKLLKQRLHYLSNTAAVFKVGPC---KLPDKLNGARLTLEAVKRTMDQ 77 (132)
Q Consensus 1 ~~ii~g~g~~~~i~~r~~~l~~~i~~~~~~~~~~~L~eRlarL~ggvavI~VGg~---Ei~erk~ri~dAlna~~aAl~~ 77 (132)
+++++|.+++++|..|+++|+++++.++++|++++|+|||+||+|++++|.+||. +++|++++|+||++++++|+++
T Consensus 330 ~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~~ri~~l~g~~~tI~irG~t~~~l~E~er~i~DAl~a~~~al~~ 409 (541)
T PRK12851 330 TTIIDGAGSKTEIEGRVAQIRAQIEETTSDYDREKLQERLAKLAGGVAVIRVGASTEVEVKEKKDRVDDALHATRAAVEE 409 (541)
T ss_pred EEEEcCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4788999999999999999999999999999999999999999999999999998 9999999999999999999999
Q ss_pred cccCCchHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 047942 78 KIGPGAGIALLHVSKELDKLQSANVGANISIKLFQHALKVFFTPYCNSVTVYF 130 (132)
Q Consensus 78 GiVpGGG~all~a~~~L~~~~~~~~~e~~Gi~iv~~AL~~p~~~ia~NaG~~~ 130 (132)
|||||||+++++++..|+++...++++++|+++|++||+.|+++|++|||+|-
T Consensus 410 g~VpGGGa~e~~~s~~L~~~~~~~~~~~~~~~~~a~AL~~ip~~La~NaG~d~ 462 (541)
T PRK12851 410 GIVPGGGVALLRAVKALDKLETANGDQRTGVEIVRRALEAPVRQIAENAGAEG 462 (541)
T ss_pred CcccCchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHhcCCCH
Confidence 99999999999999999987655788999999999999999999999999983
No 6
>PRK12850 groEL chaperonin GroEL; Reviewed
Probab=99.98 E-value=9.6e-32 Score=234.73 Aligned_cols=130 Identities=30% Similarity=0.448 Sum_probs=124.5
Q ss_pred CEEecCCCCHHHHHHHHHHHHHHhHhhcChHHHHHHHHHHHHhcCcceEEeeCCc---chhhhHhHHHHHHHHHHHHhhc
Q 047942 1 MVILGGAGSQSAIEERHSQLRSAIELSTSGYEVKLLKQRLHYLSNTAAVFKVGPC---KLPDKLNGARLTLEAVKRTMDQ 77 (132)
Q Consensus 1 ~~ii~g~g~~~~i~~r~~~l~~~i~~~~~~~~~~~L~eRlarL~ggvavI~VGg~---Ei~erk~ri~dAlna~~aAl~~ 77 (132)
++++.|.+++.+|..|+++|++++++++++|++++|+||++||+|++++|.+||. +++|++++++||++++++++++
T Consensus 330 ~~~i~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~tI~irG~t~~~l~E~er~i~DAl~~~k~a~~~ 409 (544)
T PRK12850 330 TTIIDGAGDKKNIEARVKQIRAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKEKKDRVDDALHATRAAVEE 409 (544)
T ss_pred EEEEeCCCCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcCCeEEEEECCCcHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4788999999999999999999999999999999999999999999999999998 9999999999999999999999
Q ss_pred cccCCchHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 047942 78 KIGPGAGIALLHVSKELDKLQSANVGANISIKLFQHALKVFFTPYCNSVTVYF 130 (132)
Q Consensus 78 GiVpGGG~all~a~~~L~~~~~~~~~e~~Gi~iv~~AL~~p~~~ia~NaG~~~ 130 (132)
|||||||+++++++..|+++...++++++|+++|++||+.|+++||+|||+|-
T Consensus 410 g~VpGGGa~e~~~s~~L~~~~~~~~~~~~~i~~~a~Al~~ip~~La~NaG~d~ 462 (544)
T PRK12850 410 GIVPGGGVALLRARSALRGLKGANADETAGIDIVRRALEEPLRQIATNAGFEG 462 (544)
T ss_pred CCccCCcHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHhcCCCH
Confidence 99999999999999999988434789999999999999999999999999983
No 7
>TIGR02348 GroEL chaperonin GroL. This family consists of GroEL, the larger subunit of the GroEL/GroES cytosolic chaperonin. It is found in bacteria, organelles derived from bacteria, and occasionally in the Archaea. The bacterial GroEL/GroES group I chaperonin is replaced a group II chaperonin, usually called the thermosome in the Archaeota and CCT (chaperone-containing TCP) in the Eukaryota. GroEL, thermosome subunits, and CCT subunits all fall under the scope of Pfam model pfam00118.
Probab=99.98 E-value=1.4e-31 Score=232.62 Aligned_cols=130 Identities=30% Similarity=0.452 Sum_probs=123.5
Q ss_pred CEEecCCCCHHHHHHHHHHHHHHhHhhcChHHHHHHHHHHHHhcCcceEEeeCCc---chhhhHhHHHHHHHHHHHHhhc
Q 047942 1 MVILGGAGSQSAIEERHSQLRSAIELSTSGYEVKLLKQRLHYLSNTAAVFKVGPC---KLPDKLNGARLTLEAVKRTMDQ 77 (132)
Q Consensus 1 ~~ii~g~g~~~~i~~r~~~l~~~i~~~~~~~~~~~L~eRlarL~ggvavI~VGg~---Ei~erk~ri~dAlna~~aAl~~ 77 (132)
+++++|.++++++..|+++|++++++++++||+++|+|||+||+|++++|.+||. +++|++++++||++++++++++
T Consensus 328 ~~~i~~~~~~~~~~~ri~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~tI~irG~t~~~l~E~er~i~Dal~~~r~a~~~ 407 (524)
T TIGR02348 328 TTIVEGAGDKAAIKARVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIKVGAATETEMKEKKLRVEDALNATRAAVEE 407 (524)
T ss_pred EEEEcCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3678899999999999999999999999999999999999999999999999998 9999999999999999999999
Q ss_pred cccCCchHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 047942 78 KIGPGAGIALLHVSKELDKLQSANVGANISIKLFQHALKVFFTPYCNSVTVYF 130 (132)
Q Consensus 78 GiVpGGG~all~a~~~L~~~~~~~~~e~~Gi~iv~~AL~~p~~~ia~NaG~~~ 130 (132)
|||||||+++++++..|++....++++++|+++|++||+.|+++|++|||+|-
T Consensus 408 g~VpGGGa~e~~~s~~L~~~~~~~~~~~~~~~~~a~AL~~ip~~La~NaG~d~ 460 (524)
T TIGR02348 408 GIVPGGGVALLRAAAALEGLKGDNEDEAIGIDIVKRALEAPLRQIAENAGKDG 460 (524)
T ss_pred CCccCCcHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHhCCCCH
Confidence 99999999999999999984334789999999999999999999999999983
No 8
>PRK12849 groEL chaperonin GroEL; Reviewed
Probab=99.98 E-value=1.4e-31 Score=233.73 Aligned_cols=130 Identities=32% Similarity=0.481 Sum_probs=124.6
Q ss_pred CEEecCCCCHHHHHHHHHHHHHHhHhhcChHHHHHHHHHHHHhcCcceEEeeCCc---chhhhHhHHHHHHHHHHHHhhc
Q 047942 1 MVILGGAGSQSAIEERHSQLRSAIELSTSGYEVKLLKQRLHYLSNTAAVFKVGPC---KLPDKLNGARLTLEAVKRTMDQ 77 (132)
Q Consensus 1 ~~ii~g~g~~~~i~~r~~~l~~~i~~~~~~~~~~~L~eRlarL~ggvavI~VGg~---Ei~erk~ri~dAlna~~aAl~~ 77 (132)
+++++|.+++++|..|+++|++++++++++|++++|+||++||+|++++|.+||. +++|++++++||++++++++++
T Consensus 329 ~~~i~g~~~~~~i~~r~~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~TI~irG~t~~~l~E~er~i~DAl~~~~~a~~~ 408 (542)
T PRK12849 329 TTIVDGAGDKEAIEARVAQIRRQIEETTSDYDREKLQERLAKLAGGVAVIKVGAATEVELKERKDRVEDALNATRAAVEE 408 (542)
T ss_pred EEEEeCCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4678899999999999999999999999999999999999999999999999998 9999999999999999999999
Q ss_pred cccCCchHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 047942 78 KIGPGAGIALLHVSKELDKLQSANVGANISIKLFQHALKVFFTPYCNSVTVYF 130 (132)
Q Consensus 78 GiVpGGG~all~a~~~L~~~~~~~~~e~~Gi~iv~~AL~~p~~~ia~NaG~~~ 130 (132)
|||||||+++++++..|+++...++++++|+++|++||+.|+++||+|||+|-
T Consensus 409 g~VpGGGa~e~~ls~~L~~~~~~~g~~~~~i~~~a~Al~~ip~~La~NaG~d~ 461 (542)
T PRK12849 409 GIVPGGGVALLRAAKALDELAGLNGDQAAGVEIVRRALEAPLRQIAENAGLDG 461 (542)
T ss_pred CeecCCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHCCCCH
Confidence 99999999999999999987744789999999999999999999999999973
No 9
>CHL00093 groEL chaperonin GroEL
Probab=99.98 E-value=1.5e-31 Score=232.58 Aligned_cols=129 Identities=27% Similarity=0.384 Sum_probs=122.3
Q ss_pred CEEecCCCCHHHHHHHHHHHHHHhHhhcChHHHHHHHHHHHHhcCcceEEeeCCc---chhhhHhHHHHHHHHHHHHhhc
Q 047942 1 MVILGGAGSQSAIEERHSQLRSAIELSTSGYEVKLLKQRLHYLSNTAAVFKVGPC---KLPDKLNGARLTLEAVKRTMDQ 77 (132)
Q Consensus 1 ~~ii~g~g~~~~i~~r~~~l~~~i~~~~~~~~~~~L~eRlarL~ggvavI~VGg~---Ei~erk~ri~dAlna~~aAl~~ 77 (132)
+|++. .|++++|+.|+++++.+++.++++|++++|+|||++|+|++++|.+||. +++|++++++||++++++|+++
T Consensus 330 ~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~eR~~~l~g~~~~I~irg~t~~~l~E~er~i~DAl~a~r~a~~~ 408 (529)
T CHL00093 330 TTIIA-DGNEEQVKARCEQLRKQIEIADSSYEKEKLQERLAKLSGGVAVIKVGAATETEMKDKKLRLEDAINATKAAVEE 408 (529)
T ss_pred EEEEe-cCcHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHhcCCeEEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 36676 7899999999999999999999999999999999999999999999998 9999999999999999999999
Q ss_pred cccCCchHHHHHHHHHHhhhcc--CcHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 047942 78 KIGPGAGIALLHVSKELDKLQS--ANVGANISIKLFQHALKVFFTPYCNSVTVYF 130 (132)
Q Consensus 78 GiVpGGG~all~a~~~L~~~~~--~~~~e~~Gi~iv~~AL~~p~~~ia~NaG~~~ 130 (132)
|||||||+++++++..|+++.. .++++++|+++|++||+.|+++||+|||+|-
T Consensus 409 gvVpGGGa~e~~~s~~L~~~~~~~~~g~~~~~i~~~a~AL~~ip~~La~NaG~d~ 463 (529)
T CHL00093 409 GIVPGGGATLVHLSENLKTWAKNNLKEDELIGALIVARAILAPLKRIAENAGKNG 463 (529)
T ss_pred CcccCCcHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHhcCCCH
Confidence 9999999999999999998754 4789999999999999999999999999983
No 10
>cd03344 GroEL GroEL_like type I chaperonin. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). With the aid of cochaperonin GroES, GroEL encapsulates non-native substrate proteins inside the cavity of the GroEL-ES complex and promotes folding by using energy derived from ATP hydrolysis.
Probab=99.97 E-value=2.3e-31 Score=231.26 Aligned_cols=130 Identities=35% Similarity=0.520 Sum_probs=124.6
Q ss_pred CEEecCCCCHHHHHHHHHHHHHHhHhhcChHHHHHHHHHHHHhcCcceEEeeCCc---chhhhHhHHHHHHHHHHHHhhc
Q 047942 1 MVILGGAGSQSAIEERHSQLRSAIELSTSGYEVKLLKQRLHYLSNTAAVFKVGPC---KLPDKLNGARLTLEAVKRTMDQ 77 (132)
Q Consensus 1 ~~ii~g~g~~~~i~~r~~~l~~~i~~~~~~~~~~~L~eRlarL~ggvavI~VGg~---Ei~erk~ri~dAlna~~aAl~~ 77 (132)
++++.|.+++++|+.|+++|++++++++++|++++|+||++||+|++++|.+||+ +++|++++++||++++++++++
T Consensus 327 ~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~TI~irG~t~~~l~E~~r~i~Dal~~~k~a~~~ 406 (520)
T cd03344 327 TTIIGGAGDKAAIKARIAQIRKQIEETTSDYDKEKLQERLAKLSGGVAVIKVGGATEVELKEKKDRVEDALNATRAAVEE 406 (520)
T ss_pred EEEEeCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4678888899999999999999999999999999999999999999999999998 9999999999999999999999
Q ss_pred cccCCchHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 047942 78 KIGPGAGIALLHVSKELDKLQSANVGANISIKLFQHALKVFFTPYCNSVTVYF 130 (132)
Q Consensus 78 GiVpGGG~all~a~~~L~~~~~~~~~e~~Gi~iv~~AL~~p~~~ia~NaG~~~ 130 (132)
|||||||++++++++.|+++...++++++|+++|++||+.|+++|++|||+|-
T Consensus 407 g~VpGGGa~e~~~s~~L~~~~~~~~~~~~~~~~~a~Al~~ip~~La~NaG~d~ 459 (520)
T cd03344 407 GIVPGGGVALLRASPALDKLKALNGDEKLGIEIVRRALEAPLRQIAENAGVDG 459 (520)
T ss_pred CCCcCCcHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHhcCCCH
Confidence 99999999999999999987666789999999999999999999999999983
No 11
>PTZ00114 Heat shock protein 60; Provisional
Probab=99.97 E-value=6.6e-31 Score=229.84 Aligned_cols=129 Identities=36% Similarity=0.494 Sum_probs=123.2
Q ss_pred EEecCCCCHHHHHHHHHHHHHHhHhhcChHHHHHHHHHHHHhcCcceEEeeCCc---chhhhHhHHHHHHHHHHHHhhcc
Q 047942 2 VILGGAGSQSAIEERHSQLRSAIELSTSGYEVKLLKQRLHYLSNTAAVFKVGPC---KLPDKLNGARLTLEAVKRTMDQK 78 (132)
Q Consensus 2 ~ii~g~g~~~~i~~r~~~l~~~i~~~~~~~~~~~L~eRlarL~ggvavI~VGg~---Ei~erk~ri~dAlna~~aAl~~G 78 (132)
++++|.+++++|++|+++|+.+++.++++|++++|+|||+||+|++++|.+||. +++|++++++||++++++|+++|
T Consensus 343 ~~~~~~~~~~~i~~r~~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~tI~i~G~t~~~l~E~~r~i~Dal~~~k~a~~~g 422 (555)
T PTZ00114 343 VILTGGGDKAEIKERVELLRSQIERTTSEYDKEKLKERLAKLSGGVAVIKVGGASEVEVNEKKDRIEDALNATRAAVEEG 422 (555)
T ss_pred EEEeCCCcHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 678899999999999999999999999999999999999999999999999998 89999999999999999999999
Q ss_pred ccCCchHHHHHHHHHHhhhcc---CcHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 047942 79 IGPGAGIALLHVSKELDKLQS---ANVGANISIKLFQHALKVFFTPYCNSVTVYF 130 (132)
Q Consensus 79 iVpGGG~all~a~~~L~~~~~---~~~~e~~Gi~iv~~AL~~p~~~ia~NaG~~~ 130 (132)
||||||+++++++..|+++.. .++++++|+++|++||+.|+++|++|||+|-
T Consensus 423 vVpGGGa~e~~~s~~L~~~~~~~~~~~~~~~~i~~~a~AL~~ip~~La~NaG~d~ 477 (555)
T PTZ00114 423 IVPGGGVALLRASKLLDKLEEDNELTPDQRTGVKIVRNALRLPTKQIAENAGVEG 477 (555)
T ss_pred cccCCcHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 999999999999999998753 3689999999999999999999999999983
No 12
>PLN03167 Chaperonin-60 beta subunit; Provisional
Probab=99.97 E-value=1e-30 Score=230.75 Aligned_cols=129 Identities=26% Similarity=0.382 Sum_probs=121.8
Q ss_pred EEecCCCCHHHHHHHHHHHHHHhHhhcChHHHHHHHHHHHHhcCcceEEeeCCc---chhhhHhHHHHHHHHHHHHhhcc
Q 047942 2 VILGGAGSQSAIEERHSQLRSAIELSTSGYEVKLLKQRLHYLSNTAAVFKVGPC---KLPDKLNGARLTLEAVKRTMDQK 78 (132)
Q Consensus 2 ~ii~g~g~~~~i~~r~~~l~~~i~~~~~~~~~~~L~eRlarL~ggvavI~VGg~---Ei~erk~ri~dAlna~~aAl~~G 78 (132)
+|+++.|++++|++|+.+|+.+++.++++|++++|++||++|+|++++|+|||. +++|++++++|||+++++|+++|
T Consensus 385 ~iig~~~~~~~i~~r~~~i~~~~~~~~~~~~~~~l~~Ri~~l~g~~aiI~vgG~t~~~l~E~er~i~DAl~avk~ai~~g 464 (600)
T PLN03167 385 TIVGDGSTQEAVNKRVAQIKNLIEAAEQDYEKEKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG 464 (600)
T ss_pred eeeCCCccHHHHHHHHHHHHhhhhccCCHHHHHHHHHHHhhcCCcEEEEEecCCcHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 578999999999999999999999999999999999999999999999999997 89999999999999999999999
Q ss_pred ccCCchHHHHHHHHHHhhhccC--cHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 047942 79 IGPGAGIALLHVSKELDKLQSA--NVGANISIKLFQHALKVFFTPYCNSVTVYF 130 (132)
Q Consensus 79 iVpGGG~all~a~~~L~~~~~~--~~~e~~Gi~iv~~AL~~p~~~ia~NaG~~~ 130 (132)
||||||+++++++..|+++... +.++.+|++++++||+.|+++||+|||+|-
T Consensus 465 vVpGGGa~el~ls~~L~~~~~~~~~~eq~~g~~~~~~Al~~p~r~La~NAG~d~ 518 (600)
T PLN03167 465 IVVGGGCTLLRLASKVDAIKDTLENDEQKVGADIVKRALSYPLKLIAKNAGVNG 518 (600)
T ss_pred CCccHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHhcchhhhhhcCCCCH
Confidence 9999999999999999987543 556778999999999999999999999983
No 13
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=6.5e-24 Score=185.30 Aligned_cols=109 Identities=19% Similarity=0.263 Sum_probs=100.8
Q ss_pred HHHhHhh-cChHHHHHHHHHHHHhcCcceEEeeCCc---chhhhHhHHHHHHHHHHHHhhcc-ccCCchHHHHHHHHHHh
Q 047942 21 RSAIELS-TSGYEVKLLKQRLHYLSNTAAVFKVGPC---KLPDKLNGARLTLEAVKRTMDQK-IGPGAGIALLHVSKELD 95 (132)
Q Consensus 21 ~~~i~~~-~~~~~~~~L~eRlarL~ggvavI~VGg~---Ei~erk~ri~dAlna~~aAl~~G-iVpGGG~all~a~~~L~ 95 (132)
..++++. .++|+++++++|.++ +|++++|++||+ +++|++++++|||+++++++++| ||||||++++++++.|+
T Consensus 334 ~~~ve~~~~~~~~~~~~~~~~~~-~~~~~tI~vrgate~~ldE~er~i~DAL~~~~~ave~g~iV~GGGa~e~~~a~~L~ 412 (524)
T COG0459 334 AGLVEETKTGDYDMEKLQERKAK-AGGVATILVRGATEVELDEKERRIEDALNVVRAAVEEGKIVPGGGAAEIEAALRLR 412 (524)
T ss_pred cceEEEeeccchhhhhhhhhhhc-CCCeEEEEECCccHhHHHHHHHHHHHHHHHHHHHHhcCCeEeCCCHHHHHHHHHHH
Confidence 5667666 789999999999999 999999999999 99999999999999999999999 99999999999999999
Q ss_pred hh-ccCc-HHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 047942 96 KL-QSAN-VGANISIKLFQHALKVFFTPYCNSVTVYF 130 (132)
Q Consensus 96 ~~-~~~~-~~e~~Gi~iv~~AL~~p~~~ia~NaG~~~ 130 (132)
++ ...+ +++++|+++|++||+.|+++|++|||+|-
T Consensus 413 ~~~~~~~g~~e~~~i~~~a~Ale~ip~~La~NaG~d~ 449 (524)
T COG0459 413 EYAMTVEGGDEQLGIEAFARALEAPPRQLAENAGLDP 449 (524)
T ss_pred hhhccCCchHHHHHHHHHHHHHHHHHHHHHHhCCCCH
Confidence 87 3333 49999999999999999999999999973
No 14
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT eta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=99.80 E-value=1.2e-20 Score=163.90 Aligned_cols=106 Identities=16% Similarity=0.207 Sum_probs=94.8
Q ss_pred HhhcChHHHHHHHHHHHHhcCc----ceEEeeCCc---chhhhHhHHHHHHHHHHHHhhc-cccCCchHHHHHHHHHHhh
Q 047942 25 ELSTSGYEVKLLKQRLHYLSNT----AAVFKVGPC---KLPDKLNGARLTLEAVKRTMDQ-KIGPGAGIALLHVSKELDK 96 (132)
Q Consensus 25 ~~~~~~~~~~~L~eRlarL~gg----vavI~VGg~---Ei~erk~ri~dAlna~~aAl~~-GiVpGGG~all~a~~~L~~ 96 (132)
.....-++++.+++|+.+|+|+ +++|.++|. +++|++++++||++++++++++ |||||||+++++++..|++
T Consensus 340 G~~~~ie~~~~~~~r~~~~~g~~~~~~~TI~lrG~t~~~l~E~~r~i~DAl~~~~~~~~~~~vvpGGG~~e~~ls~~l~~ 419 (522)
T TIGR02345 340 GTCALFEERQIGSERYNYFTGCPHAKTCTIILRGGAEQFIEEAERSLHDAIMIVRRALKARKIVAGGGAIEMELSKILRE 419 (522)
T ss_pred cCCceEEEEEECCeEEEEEEcCCCCceEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEeCCCHHHHHHHHHHHH
Confidence 3333445677788999999999 899999887 9999999999999999999998 7999999999999999998
Q ss_pred hcc-CcHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 047942 97 LQS-ANVGANISIKLFQHALKVFFTPYCNSVTVYF 130 (132)
Q Consensus 97 ~~~-~~~~e~~Gi~iv~~AL~~p~~~ia~NaG~~~ 130 (132)
+.. .++++++|+++|++||+.|+++|++|||+|-
T Consensus 420 ~~~~~~~~~~~~i~~~a~aL~~ip~~La~NaG~d~ 454 (522)
T TIGR02345 420 HSKKIDGKQQLIIEAFAKALEIIPRSLCENAGFDS 454 (522)
T ss_pred HHhhCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCH
Confidence 754 3778999999999999999999999999983
No 15
>cd03342 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=99.77 E-value=1.2e-18 Score=150.35 Aligned_cols=85 Identities=19% Similarity=0.272 Sum_probs=79.1
Q ss_pred cceEEeeCCc---chhhhHhHHHHHHHHHHHHhhcc-ccCCchHHHHHHHHHHhhhccC-cHHHHHHHHHHHHHHHHHHH
Q 047942 46 TAAVFKVGPC---KLPDKLNGARLTLEAVKRTMDQK-IGPGAGIALLHVSKELDKLQSA-NVGANISIKLFQHALKVFFT 120 (132)
Q Consensus 46 gvavI~VGg~---Ei~erk~ri~dAlna~~aAl~~G-iVpGGG~all~a~~~L~~~~~~-~~~e~~Gi~iv~~AL~~p~~ 120 (132)
++++|.++|. +++|.+++++||++++++++++| +|||||+++++++..|+++... ++++++++++|++||+.|++
T Consensus 328 ~~~tI~lrg~t~~~l~E~er~l~DAl~~vk~~~~~~~~vpGGGa~e~~ls~~L~~~~~~~~~~~~~~i~~~a~Al~~ip~ 407 (484)
T cd03342 328 KSCTILIKGPNDHTITQIKDAIRDGLRAVKNAIEDKCVVPGAGAFEVALYAHLKEFKKSVKGKAKLGVQAFADALLVIPK 407 (484)
T ss_pred cEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhcCCcEEeCCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHH
Confidence 5788888887 99999999999999999999999 9999999999999999987554 78999999999999999999
Q ss_pred HHHHhcCCCc
Q 047942 121 PYCNSVTVYF 130 (132)
Q Consensus 121 ~ia~NaG~~~ 130 (132)
+|++|||+|-
T Consensus 408 ~La~NaG~d~ 417 (484)
T cd03342 408 TLAENSGLDV 417 (484)
T ss_pred HHHHHcCCCH
Confidence 9999999983
No 16
>cd03336 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=99.76 E-value=6.4e-19 Score=152.93 Aligned_cols=94 Identities=16% Similarity=0.193 Sum_probs=86.0
Q ss_pred HHHHHHhc----CcceEEeeCCc---chhhhHhHHHHHHHHHHHHhhcc-ccCCchHHHHHHHHHHhhhccC-cHHHHHH
Q 047942 37 KQRLHYLS----NTAAVFKVGPC---KLPDKLNGARLTLEAVKRTMDQK-IGPGAGIALLHVSKELDKLQSA-NVGANIS 107 (132)
Q Consensus 37 ~eRlarL~----ggvavI~VGg~---Ei~erk~ri~dAlna~~aAl~~G-iVpGGG~all~a~~~L~~~~~~-~~~e~~G 107 (132)
.+|+.+|+ +++++|.++|. +++|.+++++||++++++++++| ||||||+++++++..|+++... +++++++
T Consensus 346 ~~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~er~i~Dal~~~~~~i~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~ 425 (517)
T cd03336 346 EDKLIRFSGVAAGEACTIVLRGASQQILDEAERSLHDALCVLAQTVKDTRVVLGGGCSEMLMAKAVEELAKKTPGKKSLA 425 (517)
T ss_pred CeEEEEEEccCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhCCCEEeCCCHHHHHHHHHHHHHhhhCCCHHHHH
Confidence 35788888 47889988887 99999999999999999999997 9999999999999999987554 7889999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCc
Q 047942 108 IKLFQHALKVFFTPYCNSVTVYF 130 (132)
Q Consensus 108 i~iv~~AL~~p~~~ia~NaG~~~ 130 (132)
+++|++||+.|+++|++|||+|-
T Consensus 426 i~~~a~ALe~ip~~La~NaG~d~ 448 (517)
T cd03336 426 IEAFAKALRQLPTIIADNAGYDS 448 (517)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCH
Confidence 99999999999999999999984
No 17
>TIGR02340 chap_CCT_alpha T-complex protein 1, alpha subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=99.76 E-value=1.7e-18 Score=150.78 Aligned_cols=84 Identities=19% Similarity=0.223 Sum_probs=78.7
Q ss_pred ceEEeeCCc---chhhhHhHHHHHHHHHHHHhhcc-ccCCchHHHHHHHHHHhhhccC-cHHHHHHHHHHHHHHHHHHHH
Q 047942 47 AAVFKVGPC---KLPDKLNGARLTLEAVKRTMDQK-IGPGAGIALLHVSKELDKLQSA-NVGANISIKLFQHALKVFFTP 121 (132)
Q Consensus 47 vavI~VGg~---Ei~erk~ri~dAlna~~aAl~~G-iVpGGG~all~a~~~L~~~~~~-~~~e~~Gi~iv~~AL~~p~~~ 121 (132)
+++|.++|+ +++|++++++||++++++++++| ||||||+++++++..|+++... ++++++|+++|++||+.|+++
T Consensus 368 ~~TIlirG~t~~~l~E~~r~i~DAl~~~~~~~~~~~vVpGGGa~e~~ls~~l~~~~~~~~~~~~~~~~~fa~AL~~ip~~ 447 (536)
T TIGR02340 368 SASIILRGANDFMLDEMERSLHDALCVVKRTLESNSVVPGGGAVETALSIYLENFATTLGSREQLAIAEFAEALLIIPKV 447 (536)
T ss_pred EEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhcCCCEEECCCHHHHHHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHHH
Confidence 789999888 99999999999999999999999 9999999999999999986443 778999999999999999999
Q ss_pred HHHhcCCCc
Q 047942 122 YCNSVTVYF 130 (132)
Q Consensus 122 ia~NaG~~~ 130 (132)
|++|+|+|-
T Consensus 448 La~NaG~d~ 456 (536)
T TIGR02340 448 LAVNAALDS 456 (536)
T ss_pred HHHHCCCCH
Confidence 999999984
No 18
>cd03338 TCP1_delta TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=99.76 E-value=2.4e-18 Score=148.99 Aligned_cols=86 Identities=13% Similarity=0.184 Sum_probs=80.3
Q ss_pred CcceEEeeCCc---chhhhHhHHHHHHHHHHHHhhcc-ccCCchHHHHHHHHHHhhhccC-cHHHHHHHHHHHHHHHHHH
Q 047942 45 NTAAVFKVGPC---KLPDKLNGARLTLEAVKRTMDQK-IGPGAGIALLHVSKELDKLQSA-NVGANISIKLFQHALKVFF 119 (132)
Q Consensus 45 ggvavI~VGg~---Ei~erk~ri~dAlna~~aAl~~G-iVpGGG~all~a~~~L~~~~~~-~~~e~~Gi~iv~~AL~~p~ 119 (132)
+++++|.++|. +++|++++++||++++++++++| +|||||+++++++..|+++... ++++++|+++|++||+.|+
T Consensus 360 ~~~~TIllrG~t~~~l~e~~r~i~Dal~~~~~~~~~~~vvpGGG~~e~~ls~~l~~~~~~~~~~~~~~~~~~a~al~~ip 439 (515)
T cd03338 360 GKTVTILVRGSNKLVLDEAERSLHDALCVIRCLVKKRALIPGGGAPEIEIALQLSEWARTLTGVEQYCVRAFADALEVIP 439 (515)
T ss_pred CceEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhhCCCEEECCCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH
Confidence 57889988887 99999999999999999999999 9999999999999999987553 6789999999999999999
Q ss_pred HHHHHhcCCCc
Q 047942 120 TPYCNSVTVYF 130 (132)
Q Consensus 120 ~~ia~NaG~~~ 130 (132)
++|++|||+|-
T Consensus 440 ~~L~~NaG~d~ 450 (515)
T cd03338 440 YTLAENAGLNP 450 (515)
T ss_pred HHHHHHCCCCH
Confidence 99999999984
No 19
>TIGR02346 chap_CCT_theta T-complex protein 1, theta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=99.76 E-value=2.3e-18 Score=150.12 Aligned_cols=87 Identities=15% Similarity=0.171 Sum_probs=81.4
Q ss_pred cCcceEEeeCCc---chhhhHhHHHHHHHHHHHHhhcc-ccCCchHHHHHHHHHHhhhccC-cHHHHHHHHHHHHHHHHH
Q 047942 44 SNTAAVFKVGPC---KLPDKLNGARLTLEAVKRTMDQK-IGPGAGIALLHVSKELDKLQSA-NVGANISIKLFQHALKVF 118 (132)
Q Consensus 44 ~ggvavI~VGg~---Ei~erk~ri~dAlna~~aAl~~G-iVpGGG~all~a~~~L~~~~~~-~~~e~~Gi~iv~~AL~~p 118 (132)
.+++++|.++|. +++|++++++|||+++++++++| ||||||+++++++..|+++... ++++++|+++|++||+.|
T Consensus 361 ~~~~~tI~lrG~t~~~l~E~er~i~DAl~~~k~ai~~~~vVpGGG~~e~~ls~~L~~~~~~~~~~~~~~~~~~a~aL~~i 440 (531)
T TIGR02346 361 DSKISTIILRGSTKNLLDDIERAIDDGVNVIKALVKDNRFLPGAGATEIELALRLKKYANKLPGLDQYAIKKFAEAFEII 440 (531)
T ss_pred CCCeEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEECcCHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 478899999998 99999999999999999999999 9999999999999999987543 678999999999999999
Q ss_pred HHHHHHhcCCCc
Q 047942 119 FTPYCNSVTVYF 130 (132)
Q Consensus 119 ~~~ia~NaG~~~ 130 (132)
+++|++|||+|-
T Consensus 441 p~~L~~NaG~d~ 452 (531)
T TIGR02346 441 PRTLAENAGLNP 452 (531)
T ss_pred HHHHHHhCCCCH
Confidence 999999999983
No 20
>cd03335 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=99.76 E-value=3.3e-18 Score=148.69 Aligned_cols=86 Identities=20% Similarity=0.222 Sum_probs=79.7
Q ss_pred CcceEEeeCCc---chhhhHhHHHHHHHHHHHHhhcc-ccCCchHHHHHHHHHHhhhccC-cHHHHHHHHHHHHHHHHHH
Q 047942 45 NTAAVFKVGPC---KLPDKLNGARLTLEAVKRTMDQK-IGPGAGIALLHVSKELDKLQSA-NVGANISIKLFQHALKVFF 119 (132)
Q Consensus 45 ggvavI~VGg~---Ei~erk~ri~dAlna~~aAl~~G-iVpGGG~all~a~~~L~~~~~~-~~~e~~Gi~iv~~AL~~p~ 119 (132)
+++++|.++|. +++|.+++++||++++++++++| ||||||+++++++..|+++... ++++++++++|++||+.|+
T Consensus 362 ~~~~TIllrG~t~~~l~e~er~i~Dal~~~~~~~~~~~vvpGGGa~e~~ls~~L~~~~~~~~~~~~~~i~~~a~aL~~ip 441 (527)
T cd03335 362 RSSASIILRGANDFMLDEMERSLHDALCVVKRTLESNSVVPGGGAVETALSIYLENFATTLGSREQLAIAEFAEALLVIP 441 (527)
T ss_pred CCEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhhCCCEeeCCCHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHH
Confidence 56788888887 99999999999999999999999 9999999999999999987553 7789999999999999999
Q ss_pred HHHHHhcCCCc
Q 047942 120 TPYCNSVTVYF 130 (132)
Q Consensus 120 ~~ia~NaG~~~ 130 (132)
++|++|||+|-
T Consensus 442 ~~La~NaG~d~ 452 (527)
T cd03335 442 KTLAVNAAKDA 452 (527)
T ss_pred HHHHHHCCCCH
Confidence 99999999983
No 21
>TIGR02347 chap_CCT_zeta T-complex protein 1, zeta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT zeta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=99.76 E-value=3e-18 Score=149.59 Aligned_cols=85 Identities=19% Similarity=0.234 Sum_probs=79.1
Q ss_pred cceEEeeCCc---chhhhHhHHHHHHHHHHHHhhcc-ccCCchHHHHHHHHHHhhhccC-cHHHHHHHHHHHHHHHHHHH
Q 047942 46 TAAVFKVGPC---KLPDKLNGARLTLEAVKRTMDQK-IGPGAGIALLHVSKELDKLQSA-NVGANISIKLFQHALKVFFT 120 (132)
Q Consensus 46 gvavI~VGg~---Ei~erk~ri~dAlna~~aAl~~G-iVpGGG~all~a~~~L~~~~~~-~~~e~~Gi~iv~~AL~~p~~ 120 (132)
++++|.++|. +++|++++++||++++++++++| +|||||+++++++..|+++... ++++++|+++|++||+.|++
T Consensus 371 ~~~TI~lrG~t~~~l~E~er~l~DAl~v~~~~~~~~~vvpGGGa~E~~ls~~l~~~~~~~~~~~~~~i~~fa~ALe~ip~ 450 (531)
T TIGR02347 371 KSCTILIKGPNDHTIKQIKDAVRDGLRAVKNAIEDKCVVPGAGAFEIAAYCHLKEEKKSVKGKAKLGVEAFANALLVIPK 450 (531)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhhCCcEEeCCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHH
Confidence 4788888887 99999999999999999999999 9999999999999999987553 78999999999999999999
Q ss_pred HHHHhcCCCc
Q 047942 121 PYCNSVTVYF 130 (132)
Q Consensus 121 ~ia~NaG~~~ 130 (132)
+|++|+|+|-
T Consensus 451 ~La~NaG~d~ 460 (531)
T TIGR02347 451 TLAENSGLDA 460 (531)
T ss_pred HHHHhcCCCH
Confidence 9999999984
No 22
>PTZ00212 T-complex protein 1 subunit beta; Provisional
Probab=99.76 E-value=2.8e-18 Score=149.55 Aligned_cols=87 Identities=14% Similarity=0.158 Sum_probs=80.4
Q ss_pred cCcceEEeeCCc---chhhhHhHHHHHHHHHHHHhhcc-ccCCchHHHHHHHHHHhhhccC-cHHHHHHHHHHHHHHHHH
Q 047942 44 SNTAAVFKVGPC---KLPDKLNGARLTLEAVKRTMDQK-IGPGAGIALLHVSKELDKLQSA-NVGANISIKLFQHALKVF 118 (132)
Q Consensus 44 ~ggvavI~VGg~---Ei~erk~ri~dAlna~~aAl~~G-iVpGGG~all~a~~~L~~~~~~-~~~e~~Gi~iv~~AL~~p 118 (132)
.+++++|.++|. +++|++++++|||+++++++++| ||||||+++++++..|+++... ++++++|+++|++||+.|
T Consensus 369 ~~~~~TI~lrG~t~~~l~E~er~i~DAl~vv~~~i~~~~vVpGGGa~e~~ls~~L~~~~~~~~~~~~~~i~~~a~aL~~i 448 (533)
T PTZ00212 369 KGEACTIVLRGASTHILDEAERSLHDALCVLSQTVKDTRVVLGGGCSEMLMANAVEELAKKVEGKKSLAIEAFAKALRQI 448 (533)
T ss_pred CCCEEEEEEECCChhHHHHHHHHHHHHHHHHHHHhhCCCEeeCCCHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHH
Confidence 456888888887 99999999999999999999997 9999999999999999987554 788999999999999999
Q ss_pred HHHHHHhcCCCc
Q 047942 119 FTPYCNSVTVYF 130 (132)
Q Consensus 119 ~~~ia~NaG~~~ 130 (132)
+++|++|||+|-
T Consensus 449 p~~La~NaG~d~ 460 (533)
T PTZ00212 449 PTIIADNGGYDS 460 (533)
T ss_pred HHHHHHhCCCCH
Confidence 999999999984
No 23
>TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT beta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=99.76 E-value=1e-18 Score=151.90 Aligned_cols=93 Identities=15% Similarity=0.151 Sum_probs=85.5
Q ss_pred HHHHHhcC----cceEEeeCCc---chhhhHhHHHHHHHHHHHHhhc-cccCCchHHHHHHHHHHhhhccC-cHHHHHHH
Q 047942 38 QRLHYLSN----TAAVFKVGPC---KLPDKLNGARLTLEAVKRTMDQ-KIGPGAGIALLHVSKELDKLQSA-NVGANISI 108 (132)
Q Consensus 38 eRlarL~g----gvavI~VGg~---Ei~erk~ri~dAlna~~aAl~~-GiVpGGG~all~a~~~L~~~~~~-~~~e~~Gi 108 (132)
+|+.+|+| ++++|.++|+ +++|++++++||++++++++++ +||||||+++++++..|+++... ++++++++
T Consensus 348 ~~~~~~~~~~~~~~~TIllrG~t~~~l~E~er~i~Dal~~~~~~~~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~i 427 (519)
T TIGR02341 348 DKLLKFSGVKLGEACTIVLRGATQQILDESERSLHDALCVLSQTVKESRTVLGGGCSEMLMSKAVAVEAQKVPGKEALAV 427 (519)
T ss_pred EEEEEEEcCCCCCEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhCCCEEeCCCHHHHHHHHHHHHHhhcCCChHHHHH
Confidence 67888885 7899999887 9999999999999999999988 69999999999999999987553 78899999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCc
Q 047942 109 KLFQHALKVFFTPYCNSVTVYF 130 (132)
Q Consensus 109 ~iv~~AL~~p~~~ia~NaG~~~ 130 (132)
++|++||+.|+++|++|||+|-
T Consensus 428 ~~~a~Ale~ip~~La~NaG~d~ 449 (519)
T TIGR02341 428 EAFARALRQLPTIIADNAGFDS 449 (519)
T ss_pred HHHHHHHHHHHHHHHHHCCCCH
Confidence 9999999999999999999984
No 24
>cd03341 TCP1_theta TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=99.75 E-value=4e-18 Score=146.58 Aligned_cols=86 Identities=17% Similarity=0.172 Sum_probs=80.0
Q ss_pred CcceEEeeCCc---chhhhHhHHHHHHHHHHHHhhcc-ccCCchHHHHHHHHHHhhhcc-CcHHHHHHHHHHHHHHHHHH
Q 047942 45 NTAAVFKVGPC---KLPDKLNGARLTLEAVKRTMDQK-IGPGAGIALLHVSKELDKLQS-ANVGANISIKLFQHALKVFF 119 (132)
Q Consensus 45 ggvavI~VGg~---Ei~erk~ri~dAlna~~aAl~~G-iVpGGG~all~a~~~L~~~~~-~~~~e~~Gi~iv~~AL~~p~ 119 (132)
+++++|.++|+ +++|++++++||++++++++++| +|||||+++++++..|+++.. .++++++|+++|++||+.|+
T Consensus 314 ~~~~TI~lrG~t~~~l~E~er~i~DAl~~~~~ai~~~~vVpGGG~~e~~ls~~l~~~~~~~~~~~~~~~~~~a~al~~ip 393 (472)
T cd03341 314 SKIATIVLRGATQNILDDVERAIDDGVNVFKSLTKDGRFVPGAGATEIELAKKLKEYGEKTPGLEQYAIKKFAEAFEVVP 393 (472)
T ss_pred CCeEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEeCcCHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHH
Confidence 67888988887 99999999999999999999999 999999999999999998754 36789999999999999999
Q ss_pred HHHHHhcCCCc
Q 047942 120 TPYCNSVTVYF 130 (132)
Q Consensus 120 ~~ia~NaG~~~ 130 (132)
++|++|||+|-
T Consensus 394 ~~L~~NaG~d~ 404 (472)
T cd03341 394 RTLAENAGLDA 404 (472)
T ss_pred HHHHHHCCCCH
Confidence 99999999983
No 25
>TIGR02342 chap_CCT_delta T-complex protein 1, delta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT delta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=99.75 E-value=5.4e-18 Score=147.18 Aligned_cols=87 Identities=13% Similarity=0.191 Sum_probs=80.4
Q ss_pred cCcceEEeeCCc---chhhhHhHHHHHHHHHHHHhhc-cccCCchHHHHHHHHHHhhhccC-cHHHHHHHHHHHHHHHHH
Q 047942 44 SNTAAVFKVGPC---KLPDKLNGARLTLEAVKRTMDQ-KIGPGAGIALLHVSKELDKLQSA-NVGANISIKLFQHALKVF 118 (132)
Q Consensus 44 ~ggvavI~VGg~---Ei~erk~ri~dAlna~~aAl~~-GiVpGGG~all~a~~~L~~~~~~-~~~e~~Gi~iv~~AL~~p 118 (132)
+|++++|.++|+ +++|.+++++||++++++++++ |||||||+++++++..|+++... ++++++++++|++||+.|
T Consensus 360 ~~~~~tIllrG~t~~~l~E~er~i~DAl~~v~~~~~~~~~VpGGGa~e~~ls~~l~~~~~~~~~~~~~~i~~~a~al~~i 439 (517)
T TIGR02342 360 AGKTVTVLLRGSNKLVIDEAERSLHDALCVIRSLVKKRGLIPGGGAPEIEIAIKLSKLARTMKGVESYCVRAFADALEVI 439 (517)
T ss_pred CCceEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhhCCCEEECcCHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Confidence 357899999887 9999999999999999999998 79999999999999999987543 778999999999999999
Q ss_pred HHHHHHhcCCCc
Q 047942 119 FTPYCNSVTVYF 130 (132)
Q Consensus 119 ~~~ia~NaG~~~ 130 (132)
+++|++|+|+|-
T Consensus 440 p~~La~NaG~d~ 451 (517)
T TIGR02342 440 PYTLAENAGLNP 451 (517)
T ss_pred HHHHHHHcCCCH
Confidence 999999999984
No 26
>cd03339 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=99.74 E-value=7.9e-18 Score=146.29 Aligned_cols=85 Identities=14% Similarity=0.121 Sum_probs=77.8
Q ss_pred cceEEeeCCc---chhhhHhHHHHHHHHHHHHhhcc-ccCCchHHHHHHHHHHhhhccC-cHHHHHHHHHHHHHHHHHHH
Q 047942 46 TAAVFKVGPC---KLPDKLNGARLTLEAVKRTMDQK-IGPGAGIALLHVSKELDKLQSA-NVGANISIKLFQHALKVFFT 120 (132)
Q Consensus 46 gvavI~VGg~---Ei~erk~ri~dAlna~~aAl~~G-iVpGGG~all~a~~~L~~~~~~-~~~e~~Gi~iv~~AL~~p~~ 120 (132)
++++|.++|. +++|.+++++|||+++++++++| ||||||+++++++..|+++... ++++++|+++|++||+.|++
T Consensus 372 ~~~TIllrG~t~~~l~E~er~l~DAl~~~~~~~~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~~~~~a~aL~~ip~ 451 (526)
T cd03339 372 KAVTIFIRGGNKMIIEEAKRSLHDALCVVRNLIRDNRIVYGGGAAEISCSLAVEKAADKCSGIEQYAMRAFADALESIPL 451 (526)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhhCCCEEeCCCHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHH
Confidence 4667777776 99999999999999999999998 9999999999999999987543 67899999999999999999
Q ss_pred HHHHhcCCCc
Q 047942 121 PYCNSVTVYF 130 (132)
Q Consensus 121 ~ia~NaG~~~ 130 (132)
+|++|||+|-
T Consensus 452 ~L~~NaG~d~ 461 (526)
T cd03339 452 ALAENSGLNP 461 (526)
T ss_pred HHHHHCCCCH
Confidence 9999999984
No 27
>cd03343 cpn60 cpn60 chaperonin family. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. Archaeal cpn60 (thermosome), together with TF55 from thermophilic bacteria and the eukaryotic cytosol chaperonin (CTT), belong to the type II group of chaperonins. Cpn60 consists of two stacked octameric rings, which are composed of one or two different subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=99.74 E-value=5.9e-18 Score=146.43 Aligned_cols=84 Identities=12% Similarity=0.162 Sum_probs=76.7
Q ss_pred ceEEeeCCc---chhhhHhHHHHHHHHHHHHhhcc-ccCCchHHHHHHHHHHhhhcc-CcHHHHHHHHHHHHHHHHHHHH
Q 047942 47 AAVFKVGPC---KLPDKLNGARLTLEAVKRTMDQK-IGPGAGIALLHVSKELDKLQS-ANVGANISIKLFQHALKVFFTP 121 (132)
Q Consensus 47 vavI~VGg~---Ei~erk~ri~dAlna~~aAl~~G-iVpGGG~all~a~~~L~~~~~-~~~~e~~Gi~iv~~AL~~p~~~ 121 (132)
..+|.++|+ +++|++++++||++++++++++| ||||||+++++++..|+++.. .++++++|+++|++||+.|+++
T Consensus 363 ~~TI~lrG~t~~~l~e~~~~l~Dal~~~~~~~~~~~vvpGGG~~e~~ls~~L~~~~~~~~~~~~~~~~~~~~aL~~ip~~ 442 (517)
T cd03343 363 AVTILLRGGTEHVVDELERALEDALRVVADALEDGKVVAGGGAVEIELAKRLREYARSVGGREQLAVEAFADALEEIPRT 442 (517)
T ss_pred eEEEEEECCcHHHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 346777766 99999999999999999999999 999999999999999998754 3788999999999999999999
Q ss_pred HHHhcCCCc
Q 047942 122 YCNSVTVYF 130 (132)
Q Consensus 122 ia~NaG~~~ 130 (132)
|++|||+|-
T Consensus 443 L~~NaG~d~ 451 (517)
T cd03343 443 LAENAGLDP 451 (517)
T ss_pred HHHHcCCCH
Confidence 999999983
No 28
>cd00309 chaperonin_type_I_II chaperonin families, type I and type II. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=99.72 E-value=2.8e-17 Score=140.31 Aligned_cols=86 Identities=22% Similarity=0.281 Sum_probs=79.6
Q ss_pred CcceEEeeCCc---chhhhHhHHHHHHHHHHHHhhc-cccCCchHHHHHHHHHHhhhcc-CcHHHHHHHHHHHHHHHHHH
Q 047942 45 NTAAVFKVGPC---KLPDKLNGARLTLEAVKRTMDQ-KIGPGAGIALLHVSKELDKLQS-ANVGANISIKLFQHALKVFF 119 (132)
Q Consensus 45 ggvavI~VGg~---Ei~erk~ri~dAlna~~aAl~~-GiVpGGG~all~a~~~L~~~~~-~~~~e~~Gi~iv~~AL~~p~ 119 (132)
+.+++|.++|+ +++|++++++||++++++++++ ++|||||+++++++..|++... .++++++++++|++||+.|+
T Consensus 310 ~~~~TIllrG~t~~~l~e~~r~i~dal~~~~~~~~~~~~vpGGGa~E~~ls~~L~~~~~~~~~~~~~~~~~~a~aL~~ip 389 (464)
T cd00309 310 GKVATILLRGATEVELDEAERSLHDALCAVRAAVEDGGIVPGGGAAEIELSKALEELAKTLPGKEQLGIEAFADALEVIP 389 (464)
T ss_pred CCEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCcHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHH
Confidence 35788888887 9999999999999999999999 7999999999999999998766 47899999999999999999
Q ss_pred HHHHHhcCCCc
Q 047942 120 TPYCNSVTVYF 130 (132)
Q Consensus 120 ~~ia~NaG~~~ 130 (132)
++|++|||+|-
T Consensus 390 ~~L~~NaG~d~ 400 (464)
T cd00309 390 RTLAENAGLDP 400 (464)
T ss_pred HHHHHHcCCCH
Confidence 99999999984
No 29
>TIGR02344 chap_CCT_gamma T-complex protein 1, gamma subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT gamma chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=99.72 E-value=2.7e-17 Score=142.78 Aligned_cols=84 Identities=17% Similarity=0.160 Sum_probs=76.3
Q ss_pred ceEEeeCCc---chhhhHhHHHHHHHHHHHHhhc-cccCCchHHHHHHHHHHhhhccC-cHHHHHHHHHHHHHHHHHHHH
Q 047942 47 AAVFKVGPC---KLPDKLNGARLTLEAVKRTMDQ-KIGPGAGIALLHVSKELDKLQSA-NVGANISIKLFQHALKVFFTP 121 (132)
Q Consensus 47 vavI~VGg~---Ei~erk~ri~dAlna~~aAl~~-GiVpGGG~all~a~~~L~~~~~~-~~~e~~Gi~iv~~AL~~p~~~ 121 (132)
+++|.++|. +++|.++.++||++++++++++ +||||||+++++++..|+++... ++++++++++|++||+.|+++
T Consensus 367 ~~TIlLrG~t~~~l~E~er~l~DAl~~vk~~~~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~ 446 (525)
T TIGR02344 367 ACTILLRGASKDVLNEIERNLQDAMAVARNVLLEPKLLPGGGATEMAVSVYLAKKASKLEGVQQWPYRAVADALEIIPRT 446 (525)
T ss_pred EEEEEEEcCCHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 566666666 9999999999999999999988 69999999999999999987553 778999999999999999999
Q ss_pred HHHhcCCCc
Q 047942 122 YCNSVTVYF 130 (132)
Q Consensus 122 ia~NaG~~~ 130 (132)
|++|||+|-
T Consensus 447 La~NaG~d~ 455 (525)
T TIGR02344 447 LAQNCGVNV 455 (525)
T ss_pred HHHHCCCCH
Confidence 999999983
No 30
>TIGR02343 chap_CCT_epsi T-complex protein 1, epsilon subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT epsilon chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=99.72 E-value=2.5e-17 Score=143.67 Aligned_cols=84 Identities=14% Similarity=0.116 Sum_probs=77.6
Q ss_pred ceEEeeCCc---chhhhHhHHHHHHHHHHHHhhc-cccCCchHHHHHHHHHHhhhccC-cHHHHHHHHHHHHHHHHHHHH
Q 047942 47 AAVFKVGPC---KLPDKLNGARLTLEAVKRTMDQ-KIGPGAGIALLHVSKELDKLQSA-NVGANISIKLFQHALKVFFTP 121 (132)
Q Consensus 47 vavI~VGg~---Ei~erk~ri~dAlna~~aAl~~-GiVpGGG~all~a~~~L~~~~~~-~~~e~~Gi~iv~~AL~~p~~~ 121 (132)
+++|.++|. +++|.+++++||++++++++++ +||||||+++++++..|+++... ++++++++++|++||+.|+++
T Consensus 377 ~~TIllrG~t~~~l~E~er~l~DAl~~v~~~i~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~i~~fa~ALe~ip~~ 456 (532)
T TIGR02343 377 AVTIFIRGGNKMIIEEAKRSIHDALCVVRNLIKNSRIVYGGGAAEISCSLAVSQEADKYSGVEQYAIRAFADALEEIPMA 456 (532)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHhCCCEEeCcCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHH
Confidence 678888887 9999999999999999999998 69999999999999999987553 678899999999999999999
Q ss_pred HHHhcCCCc
Q 047942 122 YCNSVTVYF 130 (132)
Q Consensus 122 ia~NaG~~~ 130 (132)
|++|+|+|-
T Consensus 457 La~NaG~d~ 465 (532)
T TIGR02343 457 LAENSGLDP 465 (532)
T ss_pred HHHHCCCCH
Confidence 999999984
No 31
>TIGR02339 thermosome_arch thermosome, various subunits, archaeal. Thermosome is the name given to the archaeal rather than eukaryotic form of the group II chaperonin (counterpart to the group I chaperonin, GroEL/GroES, in bacterial), a torroidal, ATP-dependent molecular chaperone that assists in the folding or refolding of nascent or denatured proteins. Various homologous subunits, one to five per archaeal genome, may be designated alpha, beta, etc., but phylogenetic analysis does not show distinct alpha subunit and beta subunit lineages traceable to ancient paralogs.
Probab=99.69 E-value=1e-16 Score=139.06 Aligned_cols=84 Identities=12% Similarity=0.134 Sum_probs=76.2
Q ss_pred ceEEeeCCc---chhhhHhHHHHHHHHHHHHhhcc-ccCCchHHHHHHHHHHhhhccC-cHHHHHHHHHHHHHHHHHHHH
Q 047942 47 AAVFKVGPC---KLPDKLNGARLTLEAVKRTMDQK-IGPGAGIALLHVSKELDKLQSA-NVGANISIKLFQHALKVFFTP 121 (132)
Q Consensus 47 vavI~VGg~---Ei~erk~ri~dAlna~~aAl~~G-iVpGGG~all~a~~~L~~~~~~-~~~e~~Gi~iv~~AL~~p~~~ 121 (132)
..+|.++|+ +++|.+++++||++++++++++| ||||||+++++++..|+++... ++++++++++|++||+.|+++
T Consensus 366 ~~TI~lrG~t~~~l~E~~r~i~DAl~~~~~~~~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~~~~~a~aL~~ip~~ 445 (519)
T TIGR02339 366 AVTILLRGGTEHVVDELERSIQDALHVVASALEDGKVVAGGGAVEIELALRLRSYARKIGGREQLAIEAFADALEEIPRI 445 (519)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEeeCCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 346666666 99999999999999999999999 9999999999999999987543 778999999999999999999
Q ss_pred HHHhcCCCc
Q 047942 122 YCNSVTVYF 130 (132)
Q Consensus 122 ia~NaG~~~ 130 (132)
|++|||+|-
T Consensus 446 L~~NaG~d~ 454 (519)
T TIGR02339 446 LAENAGLDP 454 (519)
T ss_pred HHHhcCCCH
Confidence 999999984
No 32
>cd03340 TCP1_eta TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=99.68 E-value=4.5e-17 Score=141.37 Aligned_cols=83 Identities=16% Similarity=0.257 Sum_probs=76.5
Q ss_pred eEEeeCCc--chhhhHhHHHHHHHHHHHHhhcc-ccCCchHHHHHHHHHHhhhccC-cHHHHHHHHHHHHHHHHHHHHHH
Q 047942 48 AVFKVGPC--KLPDKLNGARLTLEAVKRTMDQK-IGPGAGIALLHVSKELDKLQSA-NVGANISIKLFQHALKVFFTPYC 123 (132)
Q Consensus 48 avI~VGg~--Ei~erk~ri~dAlna~~aAl~~G-iVpGGG~all~a~~~L~~~~~~-~~~e~~Gi~iv~~AL~~p~~~ia 123 (132)
++|.+|++ .++|.+++++||++++++++++| ||||||+++++++..|+++... ++++++++++|++||+.|+++|+
T Consensus 367 TIllrG~t~~~l~E~er~i~Dal~~~~~~i~~~~vvpGGG~~E~~ls~~l~~~~~~~~~~~~~~~~~fa~aL~~ip~~La 446 (522)
T cd03340 367 TIILRGGAEQFIEEAERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYLRDYSRTIAGKQQLVINAFAKALEIIPRQLC 446 (522)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEECcCHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 37777877 99999999999999999999996 9999999999999999987543 78999999999999999999999
Q ss_pred HhcCCCc
Q 047942 124 NSVTVYF 130 (132)
Q Consensus 124 ~NaG~~~ 130 (132)
+|||+|-
T Consensus 447 ~NaG~d~ 453 (522)
T cd03340 447 DNAGFDA 453 (522)
T ss_pred HhCCCCH
Confidence 9999983
No 33
>cd03337 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=99.68 E-value=1.5e-16 Score=137.05 Aligned_cols=84 Identities=15% Similarity=0.159 Sum_probs=76.3
Q ss_pred ceEEeeCCc---chhhhHhHHHHHHHHHHHHhhc-cccCCchHHHHHHHHHHhhhccC-cHHHHHHHHHHHHHHHHHHHH
Q 047942 47 AAVFKVGPC---KLPDKLNGARLTLEAVKRTMDQ-KIGPGAGIALLHVSKELDKLQSA-NVGANISIKLFQHALKVFFTP 121 (132)
Q Consensus 47 vavI~VGg~---Ei~erk~ri~dAlna~~aAl~~-GiVpGGG~all~a~~~L~~~~~~-~~~e~~Gi~iv~~AL~~p~~~ 121 (132)
+++|.++|+ +++|.++.++||++++++++++ ++|||||+++++++..|+++.+. ++++++++++|++||+.|+++
T Consensus 326 ~~TIllrG~t~~~l~e~er~l~DAl~v~~~~~~~~~~vpGGGa~E~~ls~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~ 405 (480)
T cd03337 326 ACTILLRGASKDVLNEVERNLQDAMAVARNIILNPKLVPGGGATEMAVSHALSEKAKSIEGVEQWPYKAVASALEVIPRT 405 (480)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEeCCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 566666665 9999999999999999999999 69999999999999999986553 788999999999999999999
Q ss_pred HHHhcCCCc
Q 047942 122 YCNSVTVYF 130 (132)
Q Consensus 122 ia~NaG~~~ 130 (132)
|++|||+|-
T Consensus 406 La~NaG~d~ 414 (480)
T cd03337 406 LAQNCGANV 414 (480)
T ss_pred HHHHcCCCH
Confidence 999999984
No 34
>PF00118 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperonins cpn60 signature Chaperonins TCP-1 signatures 60 kd chaperonin signature; InterPro: IPR002423 Partially folded polypeptide chains, either newly made by ribosomes or emerging from mature proteins unfolded by stress, run the risk of aggregating with one another to the detriment of the organism. Folding of newly synthesised polypeptides in the crowded cellular environment requires the assistance of molecular chaperone proteins, such as the large bacterial chaperonins GroEL and GroES. GroEL and GroES prevent aggregation by encapsulating individual chains within the so-called 'Anfinsen cage' provided by the GroEL-GroES complex, where they can fold in isolation from one another []. GroEL consists of two heptameric rings of identical ATPase subunits stacked back to back, containing a cage in each ring. Each subunit consists of three domains. The equatorial domain contains the nucleotide binding site and is connected by a flexible intermediate domain with the apical domain. The latter presents several hydrophobic amino-acid side chains at the top of the ring, orientated towards the cavity of the cage. These side chains are involved in binding either a partially folded polypeptide chain or a single molecule of GroES. The assembly of proteins has been thought to be the sole result of properties inherent in the primary sequence of polypeptides themselves. In some cases, however, structural information from other protein molecules is required for correct folding and subsequent assembly into oligomers []. These 'helper' molecules are referred to as molecular chaperones, a subfamily of which are the chaperonins [], which include 10 kDa and 60 kDa proteins. These are found in abundance in prokaryotes, chloroplasts and mitochondria. They are required for normal cell growth (as demonstrated by the fact that no temperature sensitive mutants for the chaperonin genes can be found in the temperature range 20 to 43 degrees centigrade []), and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between 6 to 8 identical subunits, whereas the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The cpn10 and cpn60 oligomers also require Mg2+-ATP in order to interact to form a functional complex, although the mechanism of this interaction is as yet unknown []. This chaperonin complex is essential for the correct folding and assembly of polypeptides into oligomeric structures, of which the chaperonins themselves are not a part []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. The 60 kDa form of chaperonin is the immunodominant antigen of patients with Legionnaire's disease [], and is thought to play a role in the protection of the Legionella bacteria from oxygen radicals within macrophages. This hypothesis is based on the finding that the cpn60 gene is upregulated in response to hydrogen peroxide, a source of oxygen radicals. Cpn60 has also been found to display strong antigenicity in many bacterial species [], and has the potential for inducing immune protection against unrelated bacterial infections. The RuBisCO subunit binding protein (which has been implicated in the assembly of RuBisCO) and cpn60 have been found to be evolutionary homologues, the RuBisCO subunit binding protein having the C-terminal Gly-Gly-Met repeat found in all bacterial cpn60 sequences. Although the precise function of this repeat is unknown, it is thought to be important as it is also found in 70 kDa heat-shock proteins []. The crystal structure of Escherichia coli GroEL has been resolved to 2.8A []. The TCP-1 family of proteins act as molecular chaperones for tubulin, actin and probably some other proteins. They are weakly, but significantly, related to the cpn60/groEL chaperonin family. ; GO: 0005524 ATP binding, 0044267 cellular protein metabolic process; PDB: 3IZH_B 3IZI_I 3LOS_I 3IYF_H 3KFK_C 3KFE_E 3RUV_C 3IZK_L 3J02_B 3RUQ_A ....
Probab=99.61 E-value=1.4e-15 Score=128.77 Aligned_cols=88 Identities=19% Similarity=0.282 Sum_probs=80.9
Q ss_pred hcCcceEEeeCCc---chhhhHhHHHHHHHHHHHHhhc-cccCCchHHHHHHHHHHhhhcc-CcHHHHHHHHHHHHHHHH
Q 047942 43 LSNTAAVFKVGPC---KLPDKLNGARLTLEAVKRTMDQ-KIGPGAGIALLHVSKELDKLQS-ANVGANISIKLFQHALKV 117 (132)
Q Consensus 43 L~ggvavI~VGg~---Ei~erk~ri~dAlna~~aAl~~-GiVpGGG~all~a~~~L~~~~~-~~~~e~~Gi~iv~~AL~~ 117 (132)
+.+.+++|.++|+ +++|+++++.||+++++.++++ ++|||||+++++++..|++... .++++++++++|++||+.
T Consensus 327 ~~~~~~Till~g~t~~~l~e~~~~i~dal~~~~~~~~~~~vvpGGG~~e~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ 406 (485)
T PF00118_consen 327 LSSKICTILLRGPTEFELEERERSIHDALKVLRSALKDGGVVPGGGATELHLSKALRKYAKSLSGKEQLAIEAFADALES 406 (485)
T ss_dssp SSSSEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHHSSEEEETTTHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHTTH
T ss_pred cccCceEEEeccccchhHHHHHHHHHHHHHHHHHhccCCceeecCcchhhhhhhhHHHhhhcccCchhhhHHHHHHHHHH
Confidence 6788899999887 9999999999999999999995 6999999999999999977655 477899999999999999
Q ss_pred HHHHHHHhcCCCc
Q 047942 118 FFTPYCNSVTVYF 130 (132)
Q Consensus 118 p~~~ia~NaG~~~ 130 (132)
|+++|++|+|+|.
T Consensus 407 ip~~L~~NaG~~~ 419 (485)
T PF00118_consen 407 IPKTLAQNAGLDS 419 (485)
T ss_dssp HHHHHHHHTTSTH
T ss_pred hhhhhhhccCCCc
Confidence 9999999999974
No 35
>KOG0357 consensus Chaperonin complex component, TCP-1 epsilon subunit (CCT5) [Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=4.4e-11 Score=100.16 Aligned_cols=87 Identities=10% Similarity=0.133 Sum_probs=79.5
Q ss_pred CcceEEeeCCc--chhhhHhHHHHHHHHHHHHhhc-cccCCchHHHHHHHHHHhhhccC-cHHHHHHHHHHHHHHHHHHH
Q 047942 45 NTAAVFKVGPC--KLPDKLNGARLTLEAVKRTMDQ-KIGPGAGIALLHVSKELDKLQSA-NVGANISIKLFQHALKVFFT 120 (132)
Q Consensus 45 ggvavI~VGg~--Ei~erk~ri~dAlna~~aAl~~-GiVpGGG~all~a~~~L~~~~~~-~~~e~~Gi~iv~~AL~~p~~ 120 (132)
-.|+++-.||. -++|-|+.+.|||+++|+-+++ -||.|||+|++.|+-.+++.... ++-+|.++.+|.+||+..+.
T Consensus 240 kaVTifvRg~Nkmii~EakrslhdalCvirnlird~rivYgGGaaEiscslav~~ead~~~g~eqya~rafa~ale~ipm 319 (400)
T KOG0357|consen 240 KAVTIFVRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEISCALAVSQEADKIPGIEQYAFRAFADALESIPM 319 (400)
T ss_pred ceEEEEEecCcceeHHHHHHHhhhhHHHHHHHhhcCeeEecCchHHhhhhhHhhHhhccCCcHHHHHHHHHHHHHhhcch
Confidence 34788888888 9999999999999999999999 49999999999999999876665 78899999999999999999
Q ss_pred HHHHhcCCCcc
Q 047942 121 PYCNSVTVYFF 131 (132)
Q Consensus 121 ~ia~NaG~~~~ 131 (132)
.+|+|+|++..
T Consensus 320 alaensgl~pi 330 (400)
T KOG0357|consen 320 ALAENSGLDPI 330 (400)
T ss_pred hhhhccCCCch
Confidence 99999999864
No 36
>KOG0361 consensus Chaperonin complex component, TCP-1 eta subunit (CCT7) [Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=9.3e-11 Score=100.06 Aligned_cols=100 Identities=15% Similarity=0.223 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHhcCc-----ceEEeeCCc--chhhhHhHHHHHHHHHHHHhhcc-ccCCchHHHHHHHHHHhhhccC-c
Q 047942 31 YEVKLLKQRLHYLSNT-----AAVFKVGPC--KLPDKLNGARLTLEAVKRTMDQK-IGPGAGIALLHVSKELDKLQSA-N 101 (132)
Q Consensus 31 ~~~~~L~eRlarL~gg-----vavI~VGg~--Ei~erk~ri~dAlna~~aAl~~G-iVpGGG~all~a~~~L~~~~~~-~ 101 (132)
+|++-=.||..-|+|+ -+.|..||. -+.|..+.+.||+..+|.|++.- +|+|||+..+..++.|+++... .
T Consensus 349 eE~QvG~eRyN~Fegcp~aktcTliLRGgaeqfieE~eRSlHDAImIVrralkn~~vVaGGGaiEMElSk~lRd~S~ti~ 428 (543)
T KOG0361|consen 349 EERQVGGERYNLFEGCPKAKTCTLILRGGAEQFIEETERSLHDAIMIVRRALKNDSVVAGGGAIEMELSKYLRDYSRTIA 428 (543)
T ss_pred HHHhhcchhhhhhcCCCccceeEEEEeccHHHHHHHHhhhhhhHHHHHHHHhccCcEeeCCceeeehHHHHHHHhhcccC
Confidence 5667777899999997 456888888 88999999999999999999996 9999999999999999998776 7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 047942 102 VGANISIKLFQHALKVFFTPYCNSVTVYF 130 (132)
Q Consensus 102 ~~e~~Gi~iv~~AL~~p~~~ia~NaG~~~ 130 (132)
+++|+=+.++.+||+..++|++.|+|+|-
T Consensus 429 gK~q~~i~A~akalEvIPrqLc~NaGfDa 457 (543)
T KOG0361|consen 429 GKQQLFINAYAKALEVIPRQLCDNAGFDA 457 (543)
T ss_pred cHHHHHHHHHHHHHHHhHHHHhhhcCCcH
Confidence 89999999999999999999999999984
No 37
>KOG0359 consensus Chaperonin complex component, TCP-1 zeta subunit (CCT6) [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=3e-09 Score=91.60 Aligned_cols=86 Identities=23% Similarity=0.304 Sum_probs=76.6
Q ss_pred CcceEEeeCCc--chhhhHhHHHHHHHHHHHHhhcc-ccCCchHHHHHHHHHHhhhccC-cHHHHHHHHHHHHHHHHHHH
Q 047942 45 NTAAVFKVGPC--KLPDKLNGARLTLEAVKRTMDQK-IGPGAGIALLHVSKELDKLQSA-NVGANISIKLFQHALKVFFT 120 (132)
Q Consensus 45 ggvavI~VGg~--Ei~erk~ri~dAlna~~aAl~~G-iVpGGG~all~a~~~L~~~~~~-~~~e~~Gi~iv~~AL~~p~~ 120 (132)
+.++++.-|.. .+.+.|+.+.|.|+++..+++++ ++||+|+.++.+..+|+..+.. .++.++|+++|++||...++
T Consensus 362 ~S~TiLikgpnkht~tQikdairdglrav~ntl~d~~~i~Gaga~~va~~~~lr~~k~~vkgra~~g~~afa~all~ipk 441 (520)
T KOG0359|consen 362 SSVTILIKGPNKHTITQIKDAIRDGLRAVKNTLEDKCGIPGAGAFEVALGRHLRESKKSVKGRAYLGVKAFANALLVIPK 441 (520)
T ss_pred cceEEEEeCCccchHHHHHHHHhhHHHHHHHHhhhcccccCchHHHHHHHHHHHHhhhccCchhhhhHHHHHhhhhhhhH
Confidence 44555555555 99999999999999999999996 9999999999999999976654 78999999999999999999
Q ss_pred HHHHhcCCCc
Q 047942 121 PYCNSVTVYF 130 (132)
Q Consensus 121 ~ia~NaG~~~ 130 (132)
+++.|+|+|.
T Consensus 442 ~La~nsg~D~ 451 (520)
T KOG0359|consen 442 TLAKNSGLDE 451 (520)
T ss_pred HHHHhcCCch
Confidence 9999999984
No 38
>KOG0358 consensus Chaperonin complex component, TCP-1 delta subunit (CCT4) [Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=3.2e-09 Score=90.71 Aligned_cols=85 Identities=13% Similarity=0.161 Sum_probs=77.1
Q ss_pred ceEEeeCCc--chhhhHhHHHHHHHHHHHHhhc-cccCCchHHHHHHHHHHhhhccC-cHHHHHHHHHHHHHHHHHHHHH
Q 047942 47 AAVFKVGPC--KLPDKLNGARLTLEAVKRTMDQ-KIGPGAGIALLHVSKELDKLQSA-NVGANISIKLFQHALKVFFTPY 122 (132)
Q Consensus 47 vavI~VGg~--Ei~erk~ri~dAlna~~aAl~~-GiVpGGG~all~a~~~L~~~~~~-~~~e~~Gi~iv~~AL~~p~~~i 122 (132)
+.++..|.. .++|-.+.+.|||.++|.-++. ..+||||+.++..+..|..+... .+.+.+-+++|++||+..+.++
T Consensus 381 vsil~RGsn~lvleEaeRSlhDALCVirCLvk~r~li~GGGapEieia~~L~~~a~t~eG~~~yc~rafA~AlEvIP~tL 460 (534)
T KOG0358|consen 381 VSILLRGSNKLVLEEAERSLHDALCVIRCLVKKRALIAGGGAPEIEIALRLSALARTLEGVEAYCWRAFADALEVIPYTL 460 (534)
T ss_pred eEEEEecCchhhhHHHhhhhhhhhHHHHhhhhccceecCCCCcchHHHHHHHHHHhhhccchhHHHHHHHHHHhcccHhH
Confidence 667777777 9999999999999999998888 59999999999999999987764 6789999999999999999999
Q ss_pred HHhcCCCcc
Q 047942 123 CNSVTVYFF 131 (132)
Q Consensus 123 a~NaG~~~~ 131 (132)
|+|||+|..
T Consensus 461 AeNAGLnpI 469 (534)
T KOG0358|consen 461 AENAGLNPI 469 (534)
T ss_pred HhhCCCChh
Confidence 999999853
No 39
>KOG0363 consensus Chaperonin complex component, TCP-1 beta subunit (CCT2) [Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=5.2e-09 Score=89.10 Aligned_cols=94 Identities=17% Similarity=0.201 Sum_probs=83.5
Q ss_pred HHHHHHhcCc-----ceEEeeCCc--chhhhHhHHHHHHHHHHHHhhcc-ccCCchHHHHHHHHHHhhhccC-cHHHHHH
Q 047942 37 KQRLHYLSNT-----AAVFKVGPC--KLPDKLNGARLTLEAVKRTMDQK-IGPGAGIALLHVSKELDKLQSA-NVGANIS 107 (132)
Q Consensus 37 ~eRlarL~gg-----vavI~VGg~--Ei~erk~ri~dAlna~~aAl~~G-iVpGGG~all~a~~~L~~~~~~-~~~e~~G 107 (132)
++|+=+|||- -+++..|++ -++|-.+.+.|||.+.....++- +|.|||++.+-.+..+++...+ .+++.++
T Consensus 351 ed~li~FSGv~~GeActIVlrGat~q~LDEaeRslHDALcVLaqtv~esrvv~GgG~sEm~Ma~av~~~A~~~pGkea~A 430 (527)
T KOG0363|consen 351 EDKLIKFSGVKLGEACTIVLRGATQQILDEAERSLHDALCVLAQTVKESRVVLGGGCSEMLMAKAVDKEAQETPGKEALA 430 (527)
T ss_pred ccceeeecccccccceEEEEecccHHHHHHHHHHHHHHHHHHHHHhccceeeecCCcHHHHHHHHHHHHHhhCCchhhHH
Confidence 3466788874 567788888 89999999999999999999885 9999999999999999987765 7899999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCc
Q 047942 108 IKLFQHALKVFFTPYCNSVTVYF 130 (132)
Q Consensus 108 i~iv~~AL~~p~~~ia~NaG~~~ 130 (132)
+++|.+||.+.+..||.|+|+|-
T Consensus 431 ieAfarAL~qlPtiiaDNaG~ds 453 (527)
T KOG0363|consen 431 IEAFARALRQLPTIIADNAGYDS 453 (527)
T ss_pred HHHHHHHHHhcchhhhccCCCCH
Confidence 99999999999999999999983
No 40
>KOG0362 consensus Chaperonin complex component, TCP-1 theta subunit (CCT8) [Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=8.5e-08 Score=83.59 Aligned_cols=83 Identities=19% Similarity=0.237 Sum_probs=75.4
Q ss_pred eEEeeCCc--chhhhHhHHHHHHHHHHHHhhcc-ccCCchHHHHHHHHHHhhhccC-cHHHHHHHHHHHHHHHHHHHHHH
Q 047942 48 AVFKVGPC--KLPDKLNGARLTLEAVKRTMDQK-IGPGAGIALLHVSKELDKLQSA-NVGANISIKLFQHALKVFFTPYC 123 (132)
Q Consensus 48 avI~VGg~--Ei~erk~ri~dAlna~~aAl~~G-iVpGGG~all~a~~~L~~~~~~-~~~e~~Gi~iv~~AL~~p~~~ia 123 (132)
+++..|++ -+++-++.++|++|+.++-++++ ++||.|+.+++.+..|.+.... .+-.+++|..|.+||+..+++++
T Consensus 369 TvVLRgst~s~LDd~ERAVddgV~tyK~l~~d~rLlpGagatEieLak~i~~~g~~~~Gl~q~Aik~fa~Ale~~Pktla 448 (537)
T KOG0362|consen 369 TVVLRGATQSILDDAERAVDDGVNTYKALCSDSRLLPGAGATEIELAKQISSRGATLPGLKQLAIKKFAEALEVLPKTLA 448 (537)
T ss_pred EEEEcccchhhHHHHHHHHHHhHHHhhhhccCCccccCCchhHHHHHHHHHHhcccCCCcchhHHHHHHHHhccccHhHH
Confidence 45666766 79999999999999999999996 9999999999999999988775 77899999999999999999999
Q ss_pred HhcCCCc
Q 047942 124 NSVTVYF 130 (132)
Q Consensus 124 ~NaG~~~ 130 (132)
+|+|++.
T Consensus 449 Enagl~~ 455 (537)
T KOG0362|consen 449 ENAGLAV 455 (537)
T ss_pred HhcCCcH
Confidence 9999874
No 41
>KOG0360 consensus Chaperonin complex component, TCP-1 alpha subunit (CCT1) [Posttranslational modification, protein turnover, chaperones]
Probab=98.47 E-value=5.9e-07 Score=78.22 Aligned_cols=84 Identities=20% Similarity=0.230 Sum_probs=75.6
Q ss_pred ceEEeeCCc--chhhhHhHHHHHHHHHHHHhhcc-ccCCchHHHHHHHHHHhhhccC-cHHHHHHHHHHHHHHHHHHHHH
Q 047942 47 AAVFKVGPC--KLPDKLNGARLTLEAVKRTMDQK-IGPGAGIALLHVSKELDKLQSA-NVGANISIKLFQHALKVFFTPY 122 (132)
Q Consensus 47 vavI~VGg~--Ei~erk~ri~dAlna~~aAl~~G-iVpGGG~all~a~~~L~~~~~~-~~~e~~Gi~iv~~AL~~p~~~i 122 (132)
..+|..|+. -++|.++.+.|||.+++..++++ +|||||+.+...+-+|+.+... +.++++.+.-|..||...++.+
T Consensus 375 aSiILrgaNd~~~DEmers~hdaL~VlkrtLes~~vvpGGG~vE~aLs~yle~~a~s~~srE~laiaefa~all~ipktl 454 (545)
T KOG0360|consen 375 ASIILRGANDFMLDEMERSLHDALCVLKRTLESKSVVPGGGAVETALSIYLENFATSVGSREQLAIAEFAAALLSIPKTL 454 (545)
T ss_pred eeEEEecCCcccHhhhccchhhHHHHHHHHhccCccccCccHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhcchHHH
Confidence 567888888 89999999999999999999998 9999999999999999887664 5678888888899999999999
Q ss_pred HHhcCCCc
Q 047942 123 CNSVTVYF 130 (132)
Q Consensus 123 a~NaG~~~ 130 (132)
+-|+..|-
T Consensus 455 a~naa~Ds 462 (545)
T KOG0360|consen 455 AVNAAKDS 462 (545)
T ss_pred hhhhcccc
Confidence 99998773
No 42
>KOG0364 consensus Chaperonin complex component, TCP-1 gamma subunit (CCT3) [Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=1.6e-06 Score=75.20 Aligned_cols=93 Identities=14% Similarity=0.186 Sum_probs=78.8
Q ss_pred HHHHhcCcc-----eEEeeCCc--chhhhHhHHHHHHHHHHHHhhcc-ccCCchHHHHHHHHHHhhhccC-cHHHHHHHH
Q 047942 39 RLHYLSNTA-----AVFKVGPC--KLPDKLNGARLTLEAVKRTMDQK-IGPGAGIALLHVSKELDKLQSA-NVGANISIK 109 (132)
Q Consensus 39 RlarL~ggv-----avI~VGg~--Ei~erk~ri~dAlna~~aAl~~G-iVpGGG~all~a~~~L~~~~~~-~~~e~~Gi~ 109 (132)
-.+.|+..- .++..|++ -++|-.+-+-||....++.+-+. .|||||+++...+..|.+.... ++-++--+.
T Consensus 355 yf~f~~~Ck~pkaCtillrg~skdil~e~ernlqda~~varn~ii~PklvPGGGAtEMAvs~~L~qksa~~~GVekwPY~ 434 (527)
T KOG0364|consen 355 YFTFFTDCKEPKACTILLRGPSKDILNEVERNLQDAMGVARNVIINPKLVPGGGATEMAVSHELRQKSALMTGVEKWPYG 434 (527)
T ss_pred hhhhhhhcCCCcceEEEeccCchhHHHHHHHHhhhHHHHHHHhccCCcccCCccHHHHHHHHHHHHHHhhccchhccchh
Confidence 345555553 56667777 88999999999999999999986 9999999999999999885554 666888999
Q ss_pred HHHHHHHHHHHHHHHhcCCCcc
Q 047942 110 LFQHALKVFFTPYCNSVTVYFF 131 (132)
Q Consensus 110 iv~~AL~~p~~~ia~NaG~~~~ 131 (132)
+++.||+..++++++|+|.|.|
T Consensus 435 Ava~AlEviPrtliqncGan~I 456 (527)
T KOG0364|consen 435 AVAGALEVIPRTLIQNCGANPI 456 (527)
T ss_pred hhhcCceeccHHHHhhcCccHH
Confidence 9999999999999999999764
No 43
>cd03333 chaperonin_like chaperonin_like superfamily. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. This superfamily also contains related domains from Fab1-like phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinases that only contain the intermediate and apical domains.
Probab=94.79 E-value=0.04 Score=42.26 Aligned_cols=32 Identities=19% Similarity=0.201 Sum_probs=27.2
Q ss_pred cceEEeeCCc---chhhhHhHHHHHHHHHHHHhhc
Q 047942 46 TAAVFKVGPC---KLPDKLNGARLTLEAVKRTMDQ 77 (132)
Q Consensus 46 gvavI~VGg~---Ei~erk~ri~dAlna~~aAl~~ 77 (132)
..++|.++|+ +++|.++.+.||++++++++++
T Consensus 175 ~~~tIllrG~t~~~l~e~kr~l~dal~~~~~~~~~ 209 (209)
T cd03333 175 KAATILLRGATEVELDEVKRSLHDALCAVRAAVEE 209 (209)
T ss_pred CEEEEEEECCCHhHHHHHHHHHHHHHHHHHHHhhC
Confidence 3567777666 9999999999999999999864
No 44
>PF08717 nsp8: nsp8 replicase; InterPro: IPR014829 Viral Nsp8 (non structural protein 8) forms a hexadecameric supercomplex with Nsp7 that adopts a hollow cylinder-like structure []. The dimensions of the central channel and positive electrostatic properties of the cylinder imply that it confers processivity on RNA-dependent RNA polymerase []. ; GO: 0004197 cysteine-type endopeptidase activity, 0008242 omega peptidase activity, 0016740 transferase activity; PDB: 2AHM_F 3UB0_D.
Probab=82.54 E-value=1 Score=35.52 Aligned_cols=63 Identities=13% Similarity=0.209 Sum_probs=38.9
Q ss_pred HHHHHHHHHhHhhcChHHHHHH----------------------HHHHHHhcCcceEEeeCCcchhhhHhHH-HHHHHHH
Q 047942 15 ERHSQLRSAIELSTSGYEVKLL----------------------KQRLHYLSNTAAVFKVGPCKLPDKLNGA-RLTLEAV 71 (132)
Q Consensus 15 ~r~~~l~~~i~~~~~~~~~~~L----------------------~eRlarL~ggvavI~VGg~Ei~erk~ri-~dAlna~ 71 (132)
+-+.|+++....+.++|||+.- .+|-+|+.++.-.+..| ..+|+ -|++|++
T Consensus 33 q~~Kql~KA~NIAKse~drdaavqkKLerMAe~Am~~MYkeaRa~drksKvvSam~amLF~------MLrrLD~d~v~~i 106 (199)
T PF08717_consen 33 QELKQLKKAMNIAKSEFDRDAAVQKKLERMAEQAMTQMYKEARAEDRKSKVVSAMHAMLFG------MLRRLDSDSVNTI 106 (199)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHCHHHHHHHHHHHHHHHHHHH------HHHHH--HHHHHH
T ss_pred HHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH------HHHHhhHHHHHHH
Confidence 3456788888889999998743 23444555555444444 44455 4667777
Q ss_pred HHHhhccccCCc
Q 047942 72 KRTMDQKIGPGA 83 (132)
Q Consensus 72 ~aAl~~GiVpGG 83 (132)
..--++|+||=.
T Consensus 107 ~~~Ar~gvvPL~ 118 (199)
T PF08717_consen 107 FENARNGVVPLS 118 (199)
T ss_dssp HHHHHTT-EECC
T ss_pred HHHHHcCceeee
Confidence 777777887743
No 45
>cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1. Fab1p is important for vacuole size regulation, presumably by modulating PtdIns(3,5)P2 effector activity. In the human homolog p235/PIKfyve deletion of this domain leads to loss of catalytic activity. However no exact function this domain has been defined. In general, chaperonins are involved in productive folding of proteins.
Probab=80.99 E-value=2.3 Score=34.25 Aligned_cols=32 Identities=9% Similarity=-0.017 Sum_probs=28.0
Q ss_pred ceEEeeCCc--chhhhHhHHHHHHHHHHHHhhcc
Q 047942 47 AAVFKVGPC--KLPDKLNGARLTLEAVKRTMDQK 78 (132)
Q Consensus 47 vavI~VGg~--Ei~erk~ri~dAlna~~aAl~~G 78 (132)
++++..|++ .++|.++.+.||+++++++..+.
T Consensus 221 ~TIlLRG~t~~~lde~eR~i~Dal~v~~~~~le~ 254 (261)
T cd03334 221 CTILLRGGDLEELKKVKRVVEFMVFAAYHLKLET 254 (261)
T ss_pred eEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 567777777 99999999999999999988874
No 46
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=76.97 E-value=3.2 Score=29.24 Aligned_cols=38 Identities=18% Similarity=0.156 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHhHhhcChHHHHHHHHHHHHhcCcceE
Q 047942 12 AIEERHSQLRSAIELSTSGYEVKLLKQRLHYLSNTAAV 49 (132)
Q Consensus 12 ~i~~r~~~l~~~i~~~~~~~~~~~L~eRlarL~ggvav 49 (132)
..+.|+++++.+++.-++.-|-.+|+-+++++.|-+..
T Consensus 46 ~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~ 83 (106)
T PF10805_consen 46 EHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKE 83 (106)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHH
Confidence 34899999999999999999999999999999987654
No 47
>cd04240 AAK_UC AAK_UC: Uncharacterized (UC) amino acid kinase-like proteins found mainly in archaea and a few bacteria. Sequences in this CD are members of the Amino Acid Kinase (AAK) superfamily.
Probab=71.17 E-value=3.6 Score=31.90 Aligned_cols=41 Identities=20% Similarity=0.167 Sum_probs=22.4
Q ss_pred EEeeCCcchhhhHhHHHHHHHHHHHHhhccccCCchHH---HHHHH
Q 047942 49 VFKVGPCKLPDKLNGARLTLEAVKRTMDQKIGPGAGIA---LLHVS 91 (132)
Q Consensus 49 vI~VGg~Ei~erk~ri~dAlna~~aAl~~GiVpGGG~a---ll~a~ 91 (132)
|||+||+-+++ -..+-+.|.+.. ..+=.+|||||.. +..+.
T Consensus 1 vvKiGGsl~~~-~~~~~~~l~~~~-~~~v~iV~GGG~~A~~~r~~~ 44 (203)
T cd04240 1 VVKIGGSLIRE-AVRLLRWLKTLS-GGGVVIVPGGGPFADVVRRYQ 44 (203)
T ss_pred CEEEccccccc-HHHHHHHHHhcc-CCCEEEEcCCcHHHHHHHHHH
Confidence 68999993322 122222222221 3344699999998 55443
No 48
>cd04239 AAK_UMPK-like AAK_UMPK-like: UMP kinase (UMPK)-like, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis. Regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinases of E. coli (Ec) and Pyrococcus furiosus (Pf) are known to function as homohexamers, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial UMPKs have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Als
Probab=67.97 E-value=36 Score=26.41 Aligned_cols=40 Identities=20% Similarity=0.179 Sum_probs=25.9
Q ss_pred eEEeeCCcchhhh-----HhHHHHHHHHHHHHhhcc----ccCCchHHH
Q 047942 48 AVFKVGPCKLPDK-----LNGARLTLEAVKRTMDQK----IGPGAGIAL 87 (132)
Q Consensus 48 avI~VGg~Ei~er-----k~ri~dAlna~~aAl~~G----iVpGGG~al 87 (132)
-|||+||+-+.++ .++++...+.+....+.| +|+|||+..
T Consensus 2 iViKiGGs~l~~~~~~~~~~~i~~~a~~i~~~~~~g~~vvvV~ggG~~a 50 (229)
T cd04239 2 IVLKLSGEALAGEGGGIDPEVLKEIAREIKEVVDLGVEVAIVVGGGNIA 50 (229)
T ss_pred EEEEECcceecCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCChHH
Confidence 3799999933222 556666666666555554 899988843
No 49
>PRK14736 atpC F0F1 ATP synthase subunit epsilon; Provisional
Probab=67.27 E-value=14 Score=27.14 Aligned_cols=39 Identities=5% Similarity=0.082 Sum_probs=33.9
Q ss_pred CHHHHHHHHHHHHHHhHhhcChHHHHHHHHHHHHhcCcc
Q 047942 9 SQSAIEERHSQLRSAIELSTSGYEVKLLKQRLHYLSNTA 47 (132)
Q Consensus 9 ~~~~i~~r~~~l~~~i~~~~~~~~~~~L~eRlarL~ggv 47 (132)
|.+..++..+..+++++.+.++..++.++.+++.|+..-
T Consensus 90 D~~~a~~a~~~Ae~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (133)
T PRK14736 90 TPEMIDREIEAVEMERDATQDLDKREALNAQIVQMQEAK 128 (133)
T ss_pred CHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHH
Confidence 678888899999999988889999999999999887653
No 50
>cd04255 AAK_UMPK-MosAB AAK_UMPK-MosAB: This CD includes the alpha and beta subunits of the Mo storage protein (MosA and MosB) which are related to uridine monophosphate kinase (UMPK) enzymes that catalyze the phosphorylation of UMP by ATP, yielding UDP, and playing a key role in pyrimidine nucleotide biosynthesis. The Mo storage protein from the nitrogen-fixing bacterium, Azotobacter vinelandii, is characterized as an alpha4-beta4 octamer containing a polynuclear molybdenum-oxide cluster which is ATP-dependent to bind Mo and pH-dependent to release Mo. These and related bacterial sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK).
Probab=66.98 E-value=44 Score=27.02 Aligned_cols=46 Identities=17% Similarity=0.096 Sum_probs=29.2
Q ss_pred HhcCcceEEeeCCc-chhhhHhHHHHHHHHHHHHhh---ccccCCchHHH
Q 047942 42 YLSNTAAVFKVGPC-KLPDKLNGARLTLEAVKRTMD---QKIGPGAGIAL 87 (132)
Q Consensus 42 rL~ggvavI~VGg~-Ei~erk~ri~dAlna~~aAl~---~GiVpGGG~al 87 (132)
|+.-++.|||+||. -.++...+++...+..+...+ =.+|-|||++.
T Consensus 27 ~~~~~~~ViKiGGSvitdk~~~~i~~la~~i~~~~~~~~vilV~GGG~~~ 76 (262)
T cd04255 27 RLLPDLNVVKIGGQSIIDRGAEAVLPLVEEIVALRPEHKLLILTGGGTRA 76 (262)
T ss_pred ecCCCcEEEEeccceecCCcHHHHHHHHHHHHHHhCCCcEEEEECCHHHH
Confidence 55667899999999 223334445444444443332 25999999987
No 51
>TIGR00103 DNA_YbaB_EbfC DNA-binding protein, YbaB/EbfC family. The function of this protein is unknown, but it has been expressed and crystallized. Its gene nearly always occurs next to recR and/or dnaX. It is restricted to Bacteria and the plant Arabidopsis. The plant form contains an additional N-terminal region that may serve as a transit peptide and shows a close relationship to the cyanobacterial member, suggesting that it is a chloroplast protein. Members of this family are found in a single copy per bacterial genome, but are broadly distributed. A member is present even in the minimal gene complement of Mycoplasm genitalium.
Probab=63.75 E-value=47 Score=23.14 Aligned_cols=40 Identities=10% Similarity=0.228 Sum_probs=25.5
Q ss_pred CCCHHHHHHHHHHHHHHhHhhcChHHHHHHHHHHHHhc------CcceEEeeCCc
Q 047942 7 AGSQSAIEERHSQLRSAIELSTSGYEVKLLKQRLHYLS------NTAAVFKVGPC 55 (132)
Q Consensus 7 ~g~~~~i~~r~~~l~~~i~~~~~~~~~~~L~eRlarL~------ggvavI~VGg~ 55 (132)
.|+-..+-+..+++++++ ++++++|+... ||...|.+.|.
T Consensus 4 ~~n~~~m~kqaq~mQ~k~---------~~~q~eL~~~~v~g~sggGlV~V~~~G~ 49 (102)
T TIGR00103 4 KGNLGELMKQAQQMQEKM---------KKLQEEIAQFEVTGKSGAGLVTVTINGN 49 (102)
T ss_pred hhhHHHHHHHHHHHHHHH---------HHHHHHHhccEEEEEECCCEEEEEEEcC
Confidence 345555666666666666 45666666665 66677777776
No 52
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=60.82 E-value=46 Score=28.45 Aligned_cols=93 Identities=19% Similarity=0.316 Sum_probs=65.8
Q ss_pred CHHHHHHHHHHHHHHhHhhcChHH-----HHHHHHHHHHhcCcceEEeeCCcchhhhHhHHHHHHHHHHHHhhc-cccCC
Q 047942 9 SQSAIEERHSQLRSAIELSTSGYE-----VKLLKQRLHYLSNTAAVFKVGPCKLPDKLNGARLTLEAVKRTMDQ-KIGPG 82 (132)
Q Consensus 9 ~~~~i~~r~~~l~~~i~~~~~~~~-----~~~L~eRlarL~ggvavI~VGg~Ei~erk~ri~dAlna~~aAl~~-GiVpG 82 (132)
.-+.|..|=..|..+++....+|- ....+++..-.++||. ++..-..+|.+-|..++.-+++ |=.--
T Consensus 253 ~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~-------~~t~~L~~IseeLe~vK~emeerg~~mt 325 (359)
T PF10498_consen 253 TLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEGVS-------ERTRELAEISEELEQVKQEMEERGSSMT 325 (359)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHH-------HHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 346788888888888887766664 2233444444555443 6666778899999999988888 77777
Q ss_pred chHHHHHHHHHHhhhccC--cHHHHHHH
Q 047942 83 AGIALLHVSKELDKLQSA--NVGANISI 108 (132)
Q Consensus 83 GG~all~a~~~L~~~~~~--~~~e~~Gi 108 (132)
-|+.|++.-..|.++..+ .-+-++|+
T Consensus 326 D~sPlv~IKqAl~kLk~EI~qMdvrIGV 353 (359)
T PF10498_consen 326 DGSPLVKIKQALTKLKQEIKQMDVRIGV 353 (359)
T ss_pred CCCHHHHHHHHHHHHHHHHHHhhhhhhe
Confidence 789999988888887764 23455553
No 53
>PF09021 HutP: HutP; InterPro: IPR015111 The HutP protein family regulates the expression of Bacillus 'hut' structural genes by an anti-termination complex, which recognises three UAG triplet units, separated by four non-conserved nucleotides on the RNA terminator region. L-histidine and Mg2+ ions are also required. These proteins exhibit the structural elements of alpha/beta proteins, arranged in the order: alpha-alpha-beta-alpha-alpha-beta-beta-beta in the primary structure, and the four antiparallel beta-strands form a beta-sheet in the order beta1-beta2-beta3-beta4, with two alpha-helices each on the front (alpha1 and alpha2) and at the back (alpha3 and alpha4) of the beta-sheet []. ; PDB: 2ZH0_J 1WPS_A 1VEA_B 1WPV_B 1WRQ_A 1WRN_A 1WPT_A 1WPU_B 3BOY_B 1WMQ_B ....
Probab=59.62 E-value=29 Score=25.59 Aligned_cols=63 Identities=16% Similarity=0.105 Sum_probs=36.2
Q ss_pred HHHHHHHhHhhcChHHHHHHHHHHHHhcCcceEEeeCCcchhhhHhHHHHHHHHH-HHHhhccccCCc
Q 047942 17 HSQLRSAIELSTSGYEVKLLKQRLHYLSNTAAVFKVGPCKLPDKLNGARLTLEAV-KRTMDQKIGPGA 83 (132)
Q Consensus 17 ~~~l~~~i~~~~~~~~~~~L~eRlarL~ggvavI~VGg~Ei~erk~ri~dAlna~-~aAl~~GiVpGG 83 (132)
+....-.+..+.+.+|-+.|++.+.+.-=.+++..+||.-.+.. ..-+.++ -+|.++|+++--
T Consensus 2 vgr~Ai~lAlt~sreeE~~lk~~~~~~g~k~~a~~vGG~~~~~~----~Kiv~s~v~AA~r~gVI~~~ 65 (130)
T PF09021_consen 2 VGRAAILLALTESREEEEELKKKLKKKGIKVAAVDVGGMFIESI----QKIVESAVVAAKRNGVIEES 65 (130)
T ss_dssp HHHHHHHHHHS-SSSCHHHHHHH-HHTTEEEEEEEEEES----H----HHHHHHHHHHHHHTTSS-SS
T ss_pred HHHHHHHHHHcCCchhHHHHHHHHhhcCceEEEEEecccccccH----HHHHHHHHHHHHHcCCcccc
Confidence 33444455666667777889988866666689999999711111 1222233 377788877643
No 54
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=59.09 E-value=10 Score=34.53 Aligned_cols=104 Identities=18% Similarity=0.221 Sum_probs=70.5
Q ss_pred HHHHHHhHhhcChHHHHHHHHHHHHhcCcceEEeeCCc-----chhhh---HhHHHHHH-----HHHHHHhhccc-----
Q 047942 18 SQLRSAIELSTSGYEVKLLKQRLHYLSNTAAVFKVGPC-----KLPDK---LNGARLTL-----EAVKRTMDQKI----- 79 (132)
Q Consensus 18 ~~l~~~i~~~~~~~~~~~L~eRlarL~ggvavI~VGg~-----Ei~er---k~ri~dAl-----na~~aAl~~Gi----- 79 (132)
+++-+.+.+ .+.+.+++.|+|.-.---+|.+++|-. +.-++ .+.|+.=+ ..+++|++.|+
T Consensus 104 ~~~feaL~~--~~~d~~~~~e~l~e~r~~~a~~r~~k~~~~~~~~~~a~a~l~~ieskIanfD~~Q~kaa~~~~~G~qrI 181 (660)
T COG3972 104 QILFEALSR--NDIDFKKLEEELKESRVIIASLRVGKINDTSRINLEANALLDTIESKIANFDTDQTKAAFQSGFGKQRI 181 (660)
T ss_pred HHHHHHHHh--ccccHHHHHHHHhhhheeeeeecccceeccccccchhHHHHHHHHHHHhcccchhheeeeecCCchhhh
Confidence 344444433 457889999999877777899999866 11111 11111111 23457777754
Q ss_pred --cCCchHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHHHHHHHH
Q 047942 80 --GPGAGIALLHVSKELDKLQSANVGANISIKLFQHALKVFFTPYCN 124 (132)
Q Consensus 80 --VpGGG~all~a~~~L~~~~~~~~~e~~Gi~iv~~AL~~p~~~ia~ 124 (132)
++|.|-..+-+. ....+...+++.++.+-.+.+.|.+|+++++.
T Consensus 182 rGLAGSGKT~~La~-Kaa~lh~knPd~~I~~Tfftk~L~s~~r~lv~ 227 (660)
T COG3972 182 RGLAGSGKTELLAH-KAAELHSKNPDSRIAFTFFTKILASTMRTLVP 227 (660)
T ss_pred hcccCCCchhHHHH-HHHHHhcCCCCceEEEEeehHHHHHHHHHHHH
Confidence 578888776653 45566777889999999999999999999875
No 55
>cd00088 HPT Histidine Phosphotransfer domain, involved in signalling through a two part component systems in which an autophosphorylating histidine protein kinase serves as a phosphoryl donor to a response regulator protein; the response regulator protein is modulated by phosphorylation and dephosphorylation of a conserved aspartic acid residue; two-component proteins are abundant in most eubacteria; In E. coli there are 62 two-component proteins involved in a variety of processes such as chemotaxis, osmoregulation, metabolism and transport 1; also present in both Gram positive and Gram negative pathogenic bacteria where they regulate basic housekeeping functions and control expression of toxins and other proteins important for pathogenesis; in archaea and eukaryotes, two-component pathways constitute a very small number of all signaling systems; in fungi they mediate environmental stress responses and, in pathogenic yeast, hyphal development. In Dictyostelium and in plants, they are i
Probab=58.19 E-value=49 Score=21.54 Aligned_cols=59 Identities=20% Similarity=0.205 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHhHhhcChHHHHHHHHHHHHhcCcceEEeeCCcchhhhHhHHHHHHHHHH
Q 047942 12 AIEERHSQLRSAIELSTSGYEVKLLKQRLHYLSNTAAVFKVGPCKLPDKLNGARLTLEAVK 72 (132)
Q Consensus 12 ~i~~r~~~l~~~i~~~~~~~~~~~L~eRlarL~ggvavI~VGg~Ei~erk~ri~dAlna~~ 72 (132)
.+.+.+++|+..++.-...-+.+.+...+++|.|..+.+ |...+.+.-..+++++...+
T Consensus 11 ~~~~~l~~l~~~~~~~~~~~d~~~l~~~~H~LkGsa~~~--G~~~l~~~~~~lE~~~~~~~ 69 (94)
T cd00088 11 EAEELLEELERALLELEDAEDLNEIFRAAHTLKGSAASL--GLQRLAQLAHQLEDLLDALR 69 (94)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhHHhcC--ChHHHHHHHHHHHHHHHHHH
Confidence 455666667666653233567899999999999998754 55455555666665555443
No 56
>TIGR01216 ATP_synt_epsi ATP synthase, F1 epsilon subunit (delta in mitochondria). This model describes one of the five types of subunits in the F1 part of F1/F0 ATP synthases. Members of this family are designated epsilon in bacterial and chloroplast systems but designated delta in mitochondria, where the counterpart of the bacterial delta subunit is designated OSCP. In a few cases (Propionigenium modestum, Acetobacterium woodii) scoring above the trusted cutoff and designated here as exceptions, Na+ replaces H+ for translocation.
Probab=57.37 E-value=29 Score=24.92 Aligned_cols=35 Identities=9% Similarity=0.070 Sum_probs=29.7
Q ss_pred CHHHHHHHHHHHHHHhHhhcChHHHHHHHHHHHHh
Q 047942 9 SQSAIEERHSQLRSAIELSTSGYEVKLLKQRLHYL 43 (132)
Q Consensus 9 ~~~~i~~r~~~l~~~i~~~~~~~~~~~L~eRlarL 43 (132)
|.+..++..+..++++..+.++.++...+.+|.+.
T Consensus 88 d~~~a~~~~~~ae~~l~~~~~~~~~~~a~~~l~~a 122 (130)
T TIGR01216 88 DEAEAEKALEAAEKLLESAEDDKDLAEALLKLKKA 122 (130)
T ss_pred CHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHH
Confidence 77889999999999999888888888887777654
No 57
>cd04252 AAK_NAGK-fArgBP AAK_NAGK-fArgBP: N-Acetyl-L-glutamate kinase (NAGK) of the fungal arginine-biosynthetic pathway (fArgBP). The nuclear-encoded, mitochondrial polyprotein precursor with an N-terminal NAGK (ArgB) domain (this CD), a central DUF619 domain, and a C-terminal reductase domain (ArgC, N-Acetylglutamate Phosphate Reductase, NAGPR). The precursor is cleaved in the mitochondria into two distinct enzymes (NAGK-DUF619 and NAGPR). Native molecular weights of these proteins indicate that the kinase is an octamer whereas the reductase is a dimer. This CD also includes some gamma-proteobacteria (Xanthomonas and Xylella) NAG kinases with an N-terminal NAGK (ArgB) domain (this CD) and a C-terminal DUF619 domain. The DUF619 domain is described as a putative distant homolog of the acetyltransferase, ArgA, predicted to function in NAG synthase association in fungi. Eukaryotic sequences have an N-terminal mitochondrial transit peptide. Members of this NAG kinase domain CD belong to th
Probab=56.79 E-value=35 Score=27.06 Aligned_cols=47 Identities=26% Similarity=0.290 Sum_probs=26.4
Q ss_pred eEEeeCCcchhhhHhHHHHHHHHHHHH-hhccccCCchHHHHHHHHHH
Q 047942 48 AVFKVGPCKLPDKLNGARLTLEAVKRT-MDQKIGPGAGIALLHVSKEL 94 (132)
Q Consensus 48 avI~VGg~Ei~erk~ri~dAlna~~aA-l~~GiVpGGG~all~a~~~L 94 (132)
||||+||..+++...++-+.+...+.. ++-=+|.|||...=+....+
T Consensus 1 ~ViKiGG~~~~~~l~~~~~di~~l~~~g~~~VlVHGgg~~i~~~~~~~ 48 (248)
T cd04252 1 AVIKVGGAIIEDDLDELAASLSFLQHVGLYPIVVHGAGPQLNEELEAA 48 (248)
T ss_pred CEEEEChhhhhccHHHHHHHHHHHHHCCCcEEEEeCCCHHHHHHHHHc
Confidence 799999995444334443333332221 11127899998776655543
No 58
>PRK00358 pyrH uridylate kinase; Provisional
Probab=54.08 E-value=16 Score=28.39 Aligned_cols=40 Identities=18% Similarity=0.190 Sum_probs=26.7
Q ss_pred eEEeeCCcch-hh-----hHhHHHHHHHHHHHHhhcc----ccCCchHHH
Q 047942 48 AVFKVGPCKL-PD-----KLNGARLTLEAVKRTMDQK----IGPGAGIAL 87 (132)
Q Consensus 48 avI~VGg~Ei-~e-----rk~ri~dAlna~~aAl~~G----iVpGGG~al 87 (132)
-|||+||.-+ ++ ..+++++..+.+..-.+.| +|.|||...
T Consensus 3 iViK~GGs~l~~~~~~~~~~~~i~~~~~~i~~~~~~g~~vvlV~gGG~~a 52 (231)
T PRK00358 3 VLLKLSGEALAGEKGFGIDPEVLDRIAEEIKEVVELGVEVAIVVGGGNIF 52 (231)
T ss_pred EEEEeccceecCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCCHHH
Confidence 5899999922 22 4566666666666555555 899988653
No 59
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=53.72 E-value=1.5e+02 Score=25.65 Aligned_cols=22 Identities=0% Similarity=-0.090 Sum_probs=19.5
Q ss_pred hHhHHHHHHHHHHHHhhccccC
Q 047942 60 KLNGARLTLEAVKRTMDQKIGP 81 (132)
Q Consensus 60 rk~ri~dAlna~~aAl~~GiVp 81 (132)
....|+|++...--++++|+++
T Consensus 311 ~d~aieD~i~~L~~~~r~G~i~ 332 (365)
T KOG2391|consen 311 LDLAIEDAIYSLGKSLRDGVID 332 (365)
T ss_pred hhhHHHHHHHHHHHHHhcCeee
Confidence 4678899999999999999988
No 60
>TIGR00255 conserved hypothetical protein TIGR00255. The apparent ortholog from Aquifex aeolicus as reported is split into two consecutive reading frames.
Probab=52.99 E-value=86 Score=25.97 Aligned_cols=66 Identities=11% Similarity=0.177 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHhHhhc------ChHHHHHHHHHHHHhcCcceEEeeCCc-------------chhhhHhHHHHHHHH
Q 047942 10 QSAIEERHSQLRSAIELST------SGYEVKLLKQRLHYLSNTAAVFKVGPC-------------KLPDKLNGARLTLEA 70 (132)
Q Consensus 10 ~~~i~~r~~~l~~~i~~~~------~~~~~~~L~eRlarL~ggvavI~VGg~-------------Ei~erk~ri~dAlna 70 (132)
++.+..|++.|+..++... .+..+++|++||..|. +.. +-.. .+.|-..|++.-++.
T Consensus 156 ~~dl~~rl~~i~~~v~~i~~~~p~~~~~~~~rL~~rl~el~-~~~---id~~Rl~qEval~adK~DI~EEl~RL~sHl~~ 231 (291)
T TIGR00255 156 KSDIVQRLDLIEREVKKVRSAMPDILQWQRERLKARIEDLA-QEF---LDLNRLEQEAALLAQRIDIAEEIDRLDSHVKE 231 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHh-cCC---CCHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 3556667776666665432 3466899999999997 221 2221 788899999999999
Q ss_pred HHHHhhccc
Q 047942 71 VKRTMDQKI 79 (132)
Q Consensus 71 ~~aAl~~Gi 79 (132)
.+..+.++-
T Consensus 232 f~~~L~~~~ 240 (291)
T TIGR00255 232 FYNILKKGE 240 (291)
T ss_pred HHHHHhcCC
Confidence 999999964
No 61
>PRK00153 hypothetical protein; Validated
Probab=52.27 E-value=76 Score=21.94 Aligned_cols=39 Identities=8% Similarity=0.187 Sum_probs=25.3
Q ss_pred CCHHHHHHHHHHHHHHhHhhcChHHHHHHHHHHHHhc------CcceEEeeCCc
Q 047942 8 GSQSAIEERHSQLRSAIELSTSGYEVKLLKQRLHYLS------NTAAVFKVGPC 55 (132)
Q Consensus 8 g~~~~i~~r~~~l~~~i~~~~~~~~~~~L~eRlarL~------ggvavI~VGg~ 55 (132)
|+-..+-+..+++++++ ++++++|...+ ||...|.+.|.
T Consensus 3 ~~~~~m~~qaq~~q~~~---------~~~q~~l~~~~~~~~s~~G~V~V~v~G~ 47 (104)
T PRK00153 3 GNMQNLMKQAQQMQEKM---------QKMQEELAQMEVEGEAGGGLVKVTMTGK 47 (104)
T ss_pred ccHHHHHHHHHHHHHHH---------HHHHHHHhccEEEEEECCCeEEEEEecC
Confidence 45555666666666666 45666777666 66666777776
No 62
>cd04242 AAK_G5K_ProB AAK_G5K_ProB: Glutamate-5-kinase (G5K) catalyzes glutamate-dependent ATP cleavage; G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, in the first and controlling step of proline (and, in mammals, ornithine) biosynthesis. G5K is subject to feedback allosteric inhibition by proline or ornithine. In microorganisms and plants, proline plays an important role as an osmoprotectant and, in mammals, ornithine biosynthesis is crucial for proper ammonia detoxification, since a G5K mutation has been shown to cause human hyperammonaemia. Microbial G5K generally consists of two domains: a catalytic G5K domain and one PUA (pseudo uridine synthases and archaeosine-specific transglycosylases) domain, and some lack the PUA domain. G5K requires free Mg for activity, it is tetrameric, and it aggregates to higher forms in a proline-dependent way. G5K lacking the PUA domain remains tetrameric, active, and proline-inhibitable, but the Mg requir
Probab=51.01 E-value=79 Score=24.93 Aligned_cols=39 Identities=23% Similarity=0.232 Sum_probs=25.1
Q ss_pred EEeeCCcch-----hhhHhHHHHHHHHHHHHhhcc----ccCCchHHH
Q 047942 49 VFKVGPCKL-----PDKLNGARLTLEAVKRTMDQK----IGPGAGIAL 87 (132)
Q Consensus 49 vI~VGg~Ei-----~erk~ri~dAlna~~aAl~~G----iVpGGG~al 87 (132)
|||+||+-+ ..+..++..+.+.+....+.| +|.||+.+.
T Consensus 3 ViK~GGs~i~~~~~~~~~~~i~~~~~~i~~~~~~~~~viiV~sg~~~~ 50 (251)
T cd04242 3 VVKVGSSLLTDEDGGLDLGRLASLVEQIAELRNQGKEVILVSSGAVAA 50 (251)
T ss_pred EEEeCCCeeeCCCCCcCHHHHHHHHHHHHHHHHCCCeEEEEecCchhh
Confidence 799999922 124667777778777777665 454544443
No 63
>PF07820 TraC: TraC-like protein; InterPro: IPR012930 The members of this family are sequences that are similar to TraC (Q84HT8 from SWISSPROT) from Rhizobium etli. The gene encoding this protein is one of a group of genes found on plasmid p42a of Rhizobium etli (strain CFN 42/ATCC 51251) that are thought to be involved in the process of plasmid self-transmission. Mobilisation of plasmid p42a is of importance as it is required for transfer of plasmid p42d, the symbiotic plasmid which carries most of the genes required for nodulation and nitrogen fixation by this symbiotic bacterium. The predicted protein products of p42a are similar to known transfer proteins of Agrobacterium tumefaciens plasmid pTiC58 []. ; GO: 0000746 conjugation
Probab=50.85 E-value=33 Score=24.02 Aligned_cols=31 Identities=19% Similarity=0.278 Sum_probs=23.7
Q ss_pred CHHHHHHHHHHHHHHhHhhcChHHHHHHHHHHHHhc
Q 047942 9 SQSAIEERHSQLRSAIELSTSGYEVKLLKQRLHYLS 44 (132)
Q Consensus 9 ~~~~i~~r~~~l~~~i~~~~~~~~~~~L~eRlarL~ 44 (132)
....|++-|+.|++++.... .+.-|||+|+.
T Consensus 3 ~~s~I~~eIekLqe~lk~~e-----~keaERigr~A 33 (92)
T PF07820_consen 3 SSSKIREEIEKLQEQLKQAE-----TKEAERIGRIA 33 (92)
T ss_pred cHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHH
Confidence 35788888999999887764 56678887764
No 64
>PRK10884 SH3 domain-containing protein; Provisional
Probab=50.73 E-value=80 Score=24.87 Aligned_cols=14 Identities=21% Similarity=0.164 Sum_probs=9.8
Q ss_pred cccCCchHHHHHHH
Q 047942 78 KIGPGAGIALLHVS 91 (132)
Q Consensus 78 GiVpGGG~all~a~ 91 (132)
=|+.|||++++-+.
T Consensus 173 wf~~Gg~v~~~Gll 186 (206)
T PRK10884 173 WFMYGGGVAGIGLL 186 (206)
T ss_pred HHHHchHHHHHHHH
Confidence 47788888776554
No 65
>PF04822 Takusan: Takusan; InterPro: IPR006907 This family includes several uncharacterised muridae (mouse and rat) proteins.
Probab=50.36 E-value=45 Score=22.83 Aligned_cols=36 Identities=14% Similarity=0.163 Sum_probs=29.4
Q ss_pred HHHHH-HHHHHHHHHhHhhcChHHHHHHHHHHHHhcCcc
Q 047942 10 QSAIE-ERHSQLRSAIELSTSGYEVKLLKQRLHYLSNTA 47 (132)
Q Consensus 10 ~~~i~-~r~~~l~~~i~~~~~~~~~~~L~eRlarL~ggv 47 (132)
..+.. ++.+.|..+|...+ .||+.|+.||+-.+.|-
T Consensus 13 ~~e~~~k~lE~L~~eL~~it--~ERnELr~~L~~~~~~~ 49 (84)
T PF04822_consen 13 KKEKKMKELERLKFELQKIT--KERNELRDILALYTEGS 49 (84)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhcCCC
Confidence 34555 78888999998877 89999999998888763
No 66
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=50.14 E-value=24 Score=22.69 Aligned_cols=20 Identities=25% Similarity=0.283 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHhHhhcC
Q 047942 10 QSAIEERHSQLRSAIELSTS 29 (132)
Q Consensus 10 ~~~i~~r~~~l~~~i~~~~~ 29 (132)
.+.++.||+.|+.+|.....
T Consensus 23 v~EL~~RIa~L~aEI~R~~~ 42 (59)
T PF06698_consen 23 VEELEERIALLEAEIARLEA 42 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777766543
No 67
>TIGR02076 pyrH_arch uridylate kinase, putative. This family consists of the archaeal and spirochete proteins most closely related to bacterial uridylate kinases (TIGR02075), an enzyme involved in pyrimidine biosynthesis. Members are likely, but not known, to be functionally equivalent to their bacterial counterparts. However, substantial sequence differences suggest that regulatory mechanisms may be different; the bacterial form is allosterically regulated by GTP.
Probab=49.02 E-value=1.2e+02 Score=23.27 Aligned_cols=38 Identities=16% Similarity=0.214 Sum_probs=24.0
Q ss_pred EEeeCCcchhh--hHhHHHHHHHHHHHHhhc---cccCCchHH
Q 047942 49 VFKVGPCKLPD--KLNGARLTLEAVKRTMDQ---KIGPGAGIA 86 (132)
Q Consensus 49 vI~VGg~Ei~e--rk~ri~dAlna~~aAl~~---GiVpGGG~a 86 (132)
|||+||+-+.+ +.+.++...+.++....+ -+|.|||..
T Consensus 2 ViKlGGs~l~~~~~~~~i~~i~~~i~~~~~~~~viiV~ggG~~ 44 (221)
T TIGR02076 2 VISLGGSVLSPEIDAEFIKEFANILRKLSDEHKVGVVVGGGKT 44 (221)
T ss_pred EEEechhhcCCCCCHHHHHHHHHHHHHHHhCCeEEEEECCcHH
Confidence 79999993322 356666666666644432 378888885
No 68
>cd04236 AAK_NAGS-Urea AAK_NAGS-Urea: N-acetylglutamate (NAG) kinase-like domain of the NAG Synthase (NAGS) of the urea cycle found in animals. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate; NAG is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Ureogenic NAGS activity is dependent on the concentration of glutamate (substrate) and arginine (activator). Domain architecture of ureogenic NAGS consists of an N-terminal NAG kinase-like (ArgB) domain (this CD) and a C-terminal DUF619 domain. Members of this CD belong to the protein superfamily, the Amino Acid Kinase Family (AAKF).
Probab=48.93 E-value=34 Score=28.02 Aligned_cols=57 Identities=14% Similarity=0.112 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHhcC-------cceEEeeCCcchh--hhHhHHHHHHHHHHH-HhhccccCCchHHH
Q 047942 31 YEVKLLKQRLHYLSN-------TAAVFKVGPCKLP--DKLNGARLTLEAVKR-TMDQKIGPGAGIAL 87 (132)
Q Consensus 31 ~~~~~L~eRlarL~g-------gvavI~VGg~Ei~--erk~ri~dAlna~~a-Al~~GiVpGGG~al 87 (132)
+++..-+.=|.+|++ ..+|||+||..|+ +..+.+-..|.-... .+.-=+|-|||-..
T Consensus 14 ~~~~e~~~~l~~f~~~~~~~~~~f~VIK~GG~~~~~~~~~~~l~~dla~L~~lGl~~VlVHGggp~i 80 (271)
T cd04236 14 GDPREARYWLTQFQIAMPNDWPAFAVLEVDHSVFRSLEMVQSLSFGLAFLQRMDMKLLVVMGLSAPD 80 (271)
T ss_pred CCHHHHHHHHHHhhccCCCCCCCEEEEEEChhhhcCchhHHHHHHHHHHHHHCCCeEEEEeCCChHH
Confidence 344444445666666 5899999999553 444444444433331 12222888998844
No 69
>PRK11820 hypothetical protein; Provisional
Probab=47.89 E-value=88 Score=25.88 Aligned_cols=65 Identities=11% Similarity=0.173 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHhHhhc------ChHHHHHHHHHHHHhcCcceEEeeCCc-------------chhhhHhHHHHHHHH
Q 047942 10 QSAIEERHSQLRSAIELST------SGYEVKLLKQRLHYLSNTAAVFKVGPC-------------KLPDKLNGARLTLEA 70 (132)
Q Consensus 10 ~~~i~~r~~~l~~~i~~~~------~~~~~~~L~eRlarL~ggvavI~VGg~-------------Ei~erk~ri~dAlna 70 (132)
++.+..|+..|+..++... .+..+++|.+|+..|... +-.. .+.|-..|+..-++.
T Consensus 154 ~~dl~~rl~~i~~~~~~i~~~~p~~~~~~~~rL~~rl~el~~~-----~d~~Rl~qEval~adK~DI~EEi~RL~sHl~~ 228 (288)
T PRK11820 154 KADLLQRLDAIEALVAKIEALAPEILEEYRERLRERLEELLGE-----LDENRLEQEVALLAQKADIAEELDRLKSHLKE 228 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHhh-----cCHHHHHHHHHHHHHHcchHHHHHHHHHHHHH
Confidence 4566777777777665433 235589999999998621 2221 678899999999999
Q ss_pred HHHHhhccc
Q 047942 71 VKRTMDQKI 79 (132)
Q Consensus 71 ~~aAl~~Gi 79 (132)
.+..++++-
T Consensus 229 f~~~L~~~~ 237 (288)
T PRK11820 229 FREILKKGG 237 (288)
T ss_pred HHHHHhcCC
Confidence 999999864
No 70
>PRK04531 acetylglutamate kinase; Provisional
Probab=47.24 E-value=64 Score=27.82 Aligned_cols=70 Identities=23% Similarity=0.228 Sum_probs=37.5
Q ss_pred HHHHhHhhcChHHHHHHHHHHHHhcC----cceEEeeCCcchhhhHhHHHHHHHHHHH-HhhccccCCchHHHHHHHH
Q 047942 20 LRSAIELSTSGYEVKLLKQRLHYLSN----TAAVFKVGPCKLPDKLNGARLTLEAVKR-TMDQKIGPGAGIALLHVSK 92 (132)
Q Consensus 20 l~~~i~~~~~~~~~~~L~eRlarL~g----gvavI~VGg~Ei~erk~ri~dAlna~~a-Al~~GiVpGGG~all~a~~ 92 (132)
|.+-+++..| -||.++- |.++++ ..+||++||.-+.+....+-..|.-... .+.==+|.|||-..=....
T Consensus 10 ~~~~l~~~~~--~~e~~~~-l~~F~~~~~~~~~VIKiGG~~l~~~~~~l~~dla~L~~~G~~~VlVHGggpqI~~~l~ 84 (398)
T PRK04531 10 IVRLLSSMAS--AKEISQY-LKRFSQLDAERFAVIKVGGAVLRDDLEALASSLSFLQEVGLTPIVVHGAGPQLDAELD 84 (398)
T ss_pred HHHHHHhcCC--hhhhHHH-HHHHhCcCCCcEEEEEEChHHhhcCHHHHHHHHHHHHHCCCcEEEEECCCHHHHHHHH
Confidence 3334444433 2344433 778888 8999999998443332233222222221 2222378999986654433
No 71
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=46.40 E-value=1.9e+02 Score=24.82 Aligned_cols=100 Identities=17% Similarity=0.314 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHHHhHhhcChHH-----HHHHHHHHHHhcCcceEEeeCCcchhhhHhHHHHHHHHHHHHhhc-cccCCc
Q 047942 10 QSAIEERHSQLRSAIELSTSGYE-----VKLLKQRLHYLSNTAAVFKVGPCKLPDKLNGARLTLEAVKRTMDQ-KIGPGA 83 (132)
Q Consensus 10 ~~~i~~r~~~l~~~i~~~~~~~~-----~~~L~eRlarL~ggvavI~VGg~Ei~erk~ri~dAlna~~aAl~~-GiVpGG 83 (132)
-+.|+.|-..|..|++..-+.|- +..+++|-..+++||. +.-+..+++-+-+.-.+.-+++ |---.-
T Consensus 261 LEkI~SREK~lNnqL~~l~q~fr~a~~~lse~~e~y~q~~~gv~-------~rT~~L~eVm~e~E~~KqemEe~G~~msD 333 (384)
T KOG0972|consen 261 LEKIASREKSLNNQLASLMQKFRRATDTLSELREKYKQASVGVS-------SRTETLDEVMDEIEQLKQEMEEQGAKMSD 333 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHH-------HHHHHHHHHHHHHHHHHHHHHHhcccccC
Confidence 46788888888888876655554 5667888877777754 3334445555556666666666 777778
Q ss_pred hHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHH
Q 047942 84 GIALLHVSKELDKLQSANVGANISIKLFQHALK 116 (132)
Q Consensus 84 G~all~a~~~L~~~~~~~~~e~~Gi~iv~~AL~ 116 (132)
|+.+.+.-+.+.+++.+.....+-+-+|..++.
T Consensus 334 GaplvkIkqavsKLk~et~~mnv~igv~ehs~l 366 (384)
T KOG0972|consen 334 GAPLVKIKQAVSKLKEETQTMNVQIGVFEHSIL 366 (384)
T ss_pred CchHHHHHHHHHHHHHHHHhhhhheehhhHHHH
Confidence 899999999998887643333333334555443
No 72
>cd04253 AAK_UMPK-PyrH-Pf AAK_UMPK-PyrH-Pf: UMP kinase (UMPK)-Pf, the mostly archaeal uridine monophosphate kinase (uridylate kinase) enzymes that catalyze UMP phosphorylation and play a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinase of Pyrococcus furiosus (Pf) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial UMPKs have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs (this CD) appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of thi
Probab=46.12 E-value=21 Score=27.65 Aligned_cols=38 Identities=16% Similarity=0.212 Sum_probs=23.8
Q ss_pred EEeeCCcchhhh--HhHHHHHHHHHHHHhhc---cccCCchHH
Q 047942 49 VFKVGPCKLPDK--LNGARLTLEAVKRTMDQ---KIGPGAGIA 86 (132)
Q Consensus 49 vI~VGg~Ei~er--k~ri~dAlna~~aAl~~---GiVpGGG~a 86 (132)
|||.||+-+.++ .+.++...+.++..... -+|+|||..
T Consensus 3 ViKlGGs~l~~~~~~~~i~~~~~~i~~~~~~~~iiiV~GgG~~ 45 (221)
T cd04253 3 VISLGGSVLAPEKDADFIKEYANVLRKISDGHKVAVVVGGGRL 45 (221)
T ss_pred EEEeccceeCCCCChHHHHHHHHHHHHHhCCCEEEEEECCCHH
Confidence 799999933332 55565566655543331 289999984
No 73
>PF12277 DUF3618: Protein of unknown function (DUF3618); InterPro: IPR022062 This domain family is found in bacteria, and is approximately 50 amino acids in length.
Probab=46.10 E-value=34 Score=20.69 Aligned_cols=28 Identities=25% Similarity=0.293 Sum_probs=20.8
Q ss_pred CCHHHHHHHHHHHHHHhHhhcChHHHHHHHHHH
Q 047942 8 GSQSAIEERHSQLRSAIELSTSGYEVKLLKQRL 40 (132)
Q Consensus 8 g~~~~i~~r~~~l~~~i~~~~~~~~~~~L~eRl 40 (132)
.++++|+..|++-|.+|..+- +.|..|+
T Consensus 3 ~~~~~ie~dIe~tR~~La~tv-----d~L~~r~ 30 (49)
T PF12277_consen 3 RSPDEIERDIERTRAELAETV-----DELAARL 30 (49)
T ss_pred CCHHHHHHHHHHHHHHHHHHH-----HHHHHHC
Confidence 368999999999999997664 4455544
No 74
>PF10410 DnaB_bind: DnaB-helicase binding domain of primase; InterPro: IPR019475 This entry represents the C-terminal region three-helical domain of DNA primase []. Primases synthesise short RNA strands on single-stranded DNA templates, thereby generating the hybrid duplexes required for the initiation of synthesis by DNA polymerases. Primases are recruited to single-stranded DNA by helicases - this domain binds DnaB-helicase []. It is associated with the Toprim domain IPR006171 from INTERPRO, which is the central catalytic core. ; GO: 0016779 nucleotidyltransferase activity; PDB: 1EQN_E 1DD9_A 3B39_B 1DDE_A.
Probab=45.64 E-value=65 Score=19.23 Aligned_cols=38 Identities=13% Similarity=0.020 Sum_probs=30.4
Q ss_pred CCHHHHHHHHHHHHHHhHhhcChHHHHHHHHHHHHhcC
Q 047942 8 GSQSAIEERHSQLRSAIELSTSGYEVKLLKQRLHYLSN 45 (132)
Q Consensus 8 g~~~~i~~r~~~l~~~i~~~~~~~~~~~L~eRlarL~g 45 (132)
++++.-.+-++++...|....++.+|+-+-++++...|
T Consensus 16 ~~~egk~~~~~~~~~~i~~i~~~i~r~~y~~~la~~~~ 53 (59)
T PF10410_consen 16 DTPEGKAEAVREAAPLIAQIPDPIERELYIRELAERLG 53 (59)
T ss_dssp TSHHHHHHHHHHHHHHHTT--SHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhC
Confidence 56777777778888888889999999999999998876
No 75
>PLN02512 acetylglutamate kinase
Probab=44.97 E-value=58 Score=26.85 Aligned_cols=45 Identities=16% Similarity=0.207 Sum_probs=28.2
Q ss_pred HHHhcCcceEEeeCCcchh--hhHhHHHHHHHHHHHHhhcc----ccCCchHHH
Q 047942 40 LHYLSNTAAVFKVGPCKLP--DKLNGARLTLEAVKRTMDQK----IGPGAGIAL 87 (132)
Q Consensus 40 larL~ggvavI~VGg~Ei~--erk~ri~dAlna~~aAl~~G----iVpGGG~al 87 (132)
+.++.|...|||.||..+. +....+-+.+...+ ..| +|.|||...
T Consensus 42 i~~~~~~tiVIKlGGs~i~d~~~~~~~~~di~~l~---~~g~~iVlVHGgG~~i 92 (309)
T PLN02512 42 IQRFRGKTVVVKYGGAAMKDPELKAGVIRDLVLLS---CVGLRPVLVHGGGPEI 92 (309)
T ss_pred HHHHCCCeEEEEECCeeccChhHHHHHHHHHHHHH---HCCCCEEEEECCcHHH
Confidence 5688899999999999433 23333433333222 334 689988854
No 76
>cd02115 AAK Amino Acid Kinases (AAK) superfamily, catalytic domain; present in such enzymes like N-acetylglutamate kinase (NAGK), carbamate kinase (CK), aspartokinase (AK), glutamate-5-kinase (G5K) and UMP kinase (UMPK). The AAK superfamily includes kinases that phosphorylate a variety of amino acid substrates. These kinases catalyze the formation of phosphoric anhydrides, generally with a carboxylate, and use ATP as the source of the phosphoryl group; are involved in amino acid biosynthesis. Some of these kinases control the process via allosteric feed-back inhibition.
Probab=43.17 E-value=1.3e+02 Score=23.04 Aligned_cols=43 Identities=16% Similarity=0.184 Sum_probs=23.8
Q ss_pred EEeeCCcchhhhHhHHHHHHHHHHHHhhcc----ccCCchHHHHHHHH
Q 047942 49 VFKVGPCKLPDKLNGARLTLEAVKRTMDQK----IGPGAGIALLHVSK 92 (132)
Q Consensus 49 vI~VGg~Ei~erk~ri~dAlna~~aAl~~G----iVpGGG~all~a~~ 92 (132)
|||+||..+... +.++...+.+..-.+.| +|+|||...-....
T Consensus 1 ViKiGGs~l~~~-~~~~~~~~~i~~l~~~~~~~viV~ggg~~~~~~~~ 47 (248)
T cd02115 1 VIKFGGSSVSSE-ERLRNLARILVKLASEGGRVVVVHGAGPQITDELL 47 (248)
T ss_pred CEeeCccccCCH-HHHHHHHHHHHHHHhcCCCEEEEECCCCCcCHHHH
Confidence 689999844321 34444444444333333 78998876544433
No 77
>PRK00571 atpC F0F1 ATP synthase subunit epsilon; Validated
Probab=42.97 E-value=66 Score=23.16 Aligned_cols=35 Identities=14% Similarity=0.104 Sum_probs=26.5
Q ss_pred CCHHHHHHHHHHHHHHhHhhcChHHHHHHHHHHHH
Q 047942 8 GSQSAIEERHSQLRSAIELSTSGYEVKLLKQRLHY 42 (132)
Q Consensus 8 g~~~~i~~r~~~l~~~i~~~~~~~~~~~L~eRlar 42 (132)
=|.+..+++.+..++.+....++.++.+.+..|.+
T Consensus 89 id~~~a~~~~~~ae~~l~~~~~~~~~~~a~~~l~~ 123 (135)
T PRK00571 89 IDEARAEEAKERAEEALENKHDDVDYARAQAALAR 123 (135)
T ss_pred CCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHH
Confidence 37888999999999999887777776665554443
No 78
>PF04316 FlgM: Anti-sigma-28 factor, FlgM; InterPro: IPR007412 FlgM binds and inhibits the activity of the transcription factor sigma 28. Inhibition of sigma 28 prevents the expression of genes from flagellar transcriptional class 3, which include genes for the filament and chemotaxis. Correctly assembled basal body-hook structures export FlgM, relieving inhibition of sigma 28 and allowing expression of class 3 genes. NMR studies show that free FlgM is mostly unfolded, which may facilitate its export. The C-terminal half of FlgM adopts a tertiary structure when it binds to sigma 28. All mutations in FlgM that prevent sigma 28 inhibition affect the C-terminal domain and is the region thought to constitute the binding domain. A minimal binding domain has been identified between Glu 64 and Arg 88 in Salmonella typhimurium (P26477 from SWISSPROT).The N-terminal portion remains unstructured and may be necessary for recognition by the export machinery [].; GO: 0045892 negative regulation of transcription, DNA-dependent, 0019861 flagellum; PDB: 1RP3_B 1SC5_B.
Probab=42.79 E-value=55 Score=20.18 Aligned_cols=33 Identities=12% Similarity=0.220 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHhHhhcChHHHHHHHHHHHH
Q 047942 10 QSAIEERHSQLRSAIELSTSGYEVKLLKQRLHY 42 (132)
Q Consensus 10 ~~~i~~r~~~l~~~i~~~~~~~~~~~L~eRlar 42 (132)
++.=.+||++|+.+|+.-+-..+-+++-++|-.
T Consensus 23 ~~vr~~kV~~ik~~I~~G~Y~vd~~~iA~~ml~ 55 (57)
T PF04316_consen 23 PDVRAEKVAEIKAAIASGTYKVDAEKIAEKMLD 55 (57)
T ss_dssp HHCSHHHHHHHHHHHHTT-----HHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHcCCCCCCHHHHHHHHHh
Confidence 344457999999999988777777777776643
No 79
>TIGR02075 pyrH_bact uridylate kinase. This protein, also called UMP kinase, converts UMP to UDP by adding a phosphate from ATP. It is the first step in pyrimidine biosynthesis. GTP is an allosteric activator. In a large fraction of all bacterial genomes, the gene tends to be located immediately downstream of elongation factor Ts and upstream of ribosome recycling factor. A related protein family, believed to be equivalent in function and found in the archaea and in spirochetes, is described by a separate model, TIGR02076.
Probab=42.34 E-value=34 Score=26.74 Aligned_cols=42 Identities=14% Similarity=0.093 Sum_probs=28.3
Q ss_pred eEEeeCCcch--h----hhHhHHHHHHHHHHHHhhcc----ccCCchHHHHH
Q 047942 48 AVFKVGPCKL--P----DKLNGARLTLEAVKRTMDQK----IGPGAGIALLH 89 (132)
Q Consensus 48 avI~VGg~Ei--~----erk~ri~dAlna~~aAl~~G----iVpGGG~all~ 89 (132)
.||++||.-+ + ...++++...+.++.....| +|.|||..+..
T Consensus 4 iViKlGGs~i~~~~~~~~~~~~i~~~a~~i~~~~~~~~~vviV~G~Gs~~~~ 55 (233)
T TIGR02075 4 VLLKLSGEALAGESGFGIDPDRLNRIANEIKELVKMGIEVGIVIGGGNIFRG 55 (233)
T ss_pred EEEEeChhhcCCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEECCCHHHHH
Confidence 5899999922 2 14567777777777666554 78899975544
No 80
>CHL00202 argB acetylglutamate kinase; Provisional
Probab=42.27 E-value=1.6e+02 Score=23.90 Aligned_cols=54 Identities=13% Similarity=0.118 Sum_probs=31.7
Q ss_pred HHHhcCcceEEeeCCcchhh-h-HhHHHHHHHHHHHHhhc-c-ccCCchHHHHHHHHHH
Q 047942 40 LHYLSNTAAVFKVGPCKLPD-K-LNGARLTLEAVKRTMDQ-K-IGPGAGIALLHVSKEL 94 (132)
Q Consensus 40 larL~ggvavI~VGg~Ei~e-r-k~ri~dAlna~~aAl~~-G-iVpGGG~all~a~~~L 94 (132)
+.++.|...||++||..++. + ...+-+-+..... +-. = +|.|||...=+....+
T Consensus 18 i~~~~~~~~VIk~gG~~~~~~~l~~~~~~di~~l~~-~g~~~VlVHGgg~~i~~~~~~~ 75 (284)
T CHL00202 18 IQKFRGRIMVIKYGGAAMKNLILKADIIKDILFLSC-IGLKIVVVHGGGPEINFWLKQL 75 (284)
T ss_pred HHHHcCCeEEEEEChHHhcCcchHHHHHHHHHHHHH-CCCcEEEEeCCcHHHHHHHHHC
Confidence 67889999999999984322 1 2233333333322 211 1 7899998764444433
No 81
>PF00696 AA_kinase: Amino acid kinase family Match to Glutamate-5-kinases, C-terminal end of the alignment Match to Aspartate kinases; InterPro: IPR001048 This entry contains proteins with various specificities and includes the aspartate, glutamate and uridylate kinase families. In prokaryotes and plants the synthesis of the essential amino acids lysine and threonine is predominantly regulated by feed-back inhibition of aspartate kinase (AK) and dihydrodipicolinate synthase (DHPS). In Escherichia coli, thrA, metLM, and lysC encode aspartokinase isozymes that show feedback inhibition by threonine, methionine, and lysine, respectively []. The lysine-sensitive isoenzyme of aspartate kinase from spinach leaves has a subunit composition of 4 large and 4 small subunits []. In plants although the control of carbon fixation and nitrogen assimilation has been studied in detail, relatively little is known about the regulation of carbon and nitrogen flow into amino acids. The metabolic regulation of expression of an Arabidopsis thaliana aspartate kinase/homoserine dehydrogenase (AK/HSD) gene, which encodes two linked key enzymes in the biosynthetic pathway of aspartate family amino acids has been studied []. The conversion of aspartate into either the storage amino acid asparagine or aspartate family amino acids may be subject to a coordinated, reciprocal metabolic control, and this biochemical branch point is a part of a larger, coordinated regulatory mechanism of nitrogen and carbon storage and utilization.; GO: 0008652 cellular amino acid biosynthetic process; PDB: 2X2W_B 2WXB_B 1B7B_C 2J4L_F 2J4K_E 2J4J_F 2OGX_B 3QUO_A 3D40_A 3D41_A ....
Probab=41.02 E-value=30 Score=26.46 Aligned_cols=40 Identities=23% Similarity=0.236 Sum_probs=24.7
Q ss_pred ceEEeeCCcchhhh-HhHHHHHHHHHHHHhhcc----ccCCchHHH
Q 047942 47 AAVFKVGPCKLPDK-LNGARLTLEAVKRTMDQK----IGPGAGIAL 87 (132)
Q Consensus 47 vavI~VGg~Ei~er-k~ri~dAlna~~aAl~~G----iVpGGG~al 87 (132)
..|||+||.-+... .. +...++.+..-.+.| +|+|||...
T Consensus 2 ~~ViK~GGs~l~~~~~~-~~~~~~~i~~l~~~g~~vvvV~g~g~~~ 46 (242)
T PF00696_consen 2 TIVIKLGGSSLTDKDEE-LRELADDIALLSQLGIKVVVVHGGGSFT 46 (242)
T ss_dssp EEEEEE-HHGHSSHSHH-HHHHHHHHHHHHHTTSEEEEEESSHHHH
T ss_pred eEEEEECchhhCCchHH-HHHHHHHHHHHHhCCCeEEEEECChhhc
Confidence 46899999933332 12 666666666555554 888988644
No 82
>KOG3633 consensus BAG family molecular chaperone regulator 2 [Posttranslational modification, protein turnover, chaperones]
Probab=39.97 E-value=73 Score=25.27 Aligned_cols=45 Identities=24% Similarity=0.132 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHhHhh----------------------cChHHHHHHHHHHHHhcCcceEEeeCCc
Q 047942 11 SAIEERHSQLRSAIELS----------------------TSGYEVKLLKQRLHYLSNTAAVFKVGPC 55 (132)
Q Consensus 11 ~~i~~r~~~l~~~i~~~----------------------~~~~~~~~L~eRlarL~ggvavI~VGg~ 55 (132)
+.++.|+++||+..-.- -|+-|||.+.-=+.||++..+++.|--.
T Consensus 52 D~lelrVE~LRk~A~~le~eKe~lL~s~~~I~~~~~M~~~se~eREEi~l~~~Rl~~Rt~TVev~Ve 118 (219)
T KOG3633|consen 52 DSLELRVEKLRKDALNLEEEKEYLLMSMDLIKSNEMMQNMSEAEREEIILYLQRLSSRTATVEVRVE 118 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhhHHHHHHHHHHHhcccceEEEEEe
Confidence 56788888887643221 2567788888889999999999887643
No 83
>TIGR01890 N-Ac-Glu-synth amino-acid N-acetyltransferase. This model represents a clade of amino-acid N-acetyltransferases acting mainly on glutamate in the first step of the "acetylated" ornithine biosynthesis pathway. For this reason it is also called N-acetylglutamate synthase. The enzyme may also act on aspartate.
Probab=39.15 E-value=53 Score=28.05 Aligned_cols=47 Identities=11% Similarity=0.080 Sum_probs=28.9
Q ss_pred HHHhcCcceEEeeCCcchh-hhHhHHHHHHHHHHHHhhcc----ccCCchHHHHH
Q 047942 40 LHYLSNTAAVFKVGPCKLP-DKLNGARLTLEAVKRTMDQK----IGPGAGIALLH 89 (132)
Q Consensus 40 larL~ggvavI~VGg~Ei~-erk~ri~dAlna~~aAl~~G----iVpGGG~all~ 89 (132)
+.++.|.+.|||+||.-+. +....+-+.+...+. .| +|-|||-..=+
T Consensus 12 i~~~~~~~~ViK~GG~~~~~~~~~~~~~~i~~l~~---~g~~~vlVHGgg~~i~~ 63 (429)
T TIGR01890 12 INAHRGKTFVVGLGGELVEGGNLGNIVADIALLHS---LGVRLVLVHGARPQIER 63 (429)
T ss_pred HHHhCCCEEEEEEChhhccCccHHHHHHHHHHHHH---CCCcEEEEcCCCHHHHH
Confidence 7789999999999999442 222333333333322 24 78999954433
No 84
>PRK14558 pyrH uridylate kinase; Provisional
Probab=38.21 E-value=31 Score=26.91 Aligned_cols=39 Identities=18% Similarity=0.229 Sum_probs=23.9
Q ss_pred eEEeeCCcch-hh-----hHhHHHHHHHHHHHHhhcc----ccCCchHH
Q 047942 48 AVFKVGPCKL-PD-----KLNGARLTLEAVKRTMDQK----IGPGAGIA 86 (132)
Q Consensus 48 avI~VGg~Ei-~e-----rk~ri~dAlna~~aAl~~G----iVpGGG~a 86 (132)
-|||+||.-+ ++ ....+++..+.++...+.| +|.|||+.
T Consensus 3 iviKlGgs~lt~~~~~~~~~~~i~~la~~i~~~~~~g~~viiV~GgGs~ 51 (231)
T PRK14558 3 VLLKLSGEALSGEGEKGFDPERVNYLVNEIKSVVEYGFKIGIVIGAGNL 51 (231)
T ss_pred EEEEeeHHHccCCCCCCcCHHHHHHHHHHHHHHHHCCCeEEEEECccHH
Confidence 3799999822 11 2344566666666655555 77788874
No 85
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=37.28 E-value=70 Score=22.84 Aligned_cols=13 Identities=23% Similarity=0.301 Sum_probs=6.6
Q ss_pred HHHHHHHHHhcCc
Q 047942 34 KLLKQRLHYLSNT 46 (132)
Q Consensus 34 ~~L~eRlarL~gg 46 (132)
+.+++|+..+-+.
T Consensus 77 ~~~~~~v~~~L~~ 89 (118)
T TIGR01837 77 KAFDERVEQALNR 89 (118)
T ss_pred HHHHHHHHHHHHH
Confidence 3455555554444
No 86
>PRK13446 atpC F0F1 ATP synthase subunit epsilon; Provisional
Probab=36.44 E-value=1e+02 Score=22.41 Aligned_cols=33 Identities=6% Similarity=-0.018 Sum_probs=24.8
Q ss_pred CHHHHHHHHHHHHHHhHhhcChHHHHHHHHHHH
Q 047942 9 SQSAIEERHSQLRSAIELSTSGYEVKLLKQRLH 41 (132)
Q Consensus 9 ~~~~i~~r~~~l~~~i~~~~~~~~~~~L~eRla 41 (132)
|.+..++.++..++++....++.++.+.+.+|.
T Consensus 90 D~~~a~~~~~~A~~~l~~~~~~~~~~~a~~~l~ 122 (136)
T PRK13446 90 DVERARAALERAEQRLKKLTPEDDSARAEAALE 122 (136)
T ss_pred CHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence 678888888999999987777777666555443
No 87
>smart00574 POX domain associated with HOX domains.
Probab=34.73 E-value=1.3e+02 Score=22.68 Aligned_cols=60 Identities=17% Similarity=0.146 Sum_probs=38.4
Q ss_pred ChHHHHHHHHHHHHhcCcceEEeeCCcchhhhHhHHHHHHHHHHHHhhccccCCchHHHHHHHHHHhhh
Q 047942 29 SGYEVKLLKQRLHYLSNTAAVFKVGPCKLPDKLNGARLTLEAVKRTMDQKIGPGAGIALLHVSKELDKL 97 (132)
Q Consensus 29 ~~~~~~~L~eRlarL~ggvavI~VGg~Ei~erk~ri~dAlna~~aAl~~GiVpGGG~all~a~~~L~~~ 97 (132)
+..||..++.+.+||..=. .|+++|-..+-|=+..+.++.+ .|+|.|.+-.+.+-.|+..
T Consensus 68 s~~~r~e~q~kk~kLl~mL-------~eVd~RY~qY~~qmq~v~ssFe--~vaG~g~a~~yt~lAl~a~ 127 (140)
T smart00574 68 STAERQELQRKKAKLLSML-------EEVDRRYKHYYEQMQTVVSSFD--QAAGLGAAKPYTALALKTI 127 (140)
T ss_pred chhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH--HHhcCCchHHHHHHHHHHH
Confidence 3467788888888875210 0555555555555555554444 5799999998888777654
No 88
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=34.10 E-value=1e+02 Score=19.36 Aligned_cols=32 Identities=22% Similarity=0.245 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHhHhhcChHHHHHHHHHHHHh
Q 047942 10 QSAIEERHSQLRSAIELSTSGYEVKLLKQRLHYL 43 (132)
Q Consensus 10 ~~~i~~r~~~l~~~i~~~~~~~~~~~L~eRlarL 43 (132)
...+...+++++.+++... .+.+.|++.+.+|
T Consensus 19 ~~~~~~ei~~l~~~i~~l~--~e~~~L~~ei~~l 50 (80)
T PF04977_consen 19 YYQLNQEIAELQKEIEELK--KENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHh
Confidence 4456666777777776654 5666777777777
No 89
>CHL00063 atpE ATP synthase CF1 epsilon subunit
Probab=33.25 E-value=1.2e+02 Score=21.99 Aligned_cols=34 Identities=6% Similarity=-0.026 Sum_probs=24.8
Q ss_pred CHHHHHHHHHHHHHHhHhhcChHHHHHHHHHHHH
Q 047942 9 SQSAIEERHSQLRSAIELSTSGYEVKLLKQRLHY 42 (132)
Q Consensus 9 ~~~~i~~r~~~l~~~i~~~~~~~~~~~L~eRlar 42 (132)
|.++.++..+..++.+....++.++...+..|.|
T Consensus 88 D~~~a~~~~~~A~~~l~~~~~~~~~~~a~~~l~r 121 (134)
T CHL00063 88 DPQEAQQTLEIAEANLEKAEGKKQKIEANLALKR 121 (134)
T ss_pred CHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Confidence 6778888888888888877777776665554443
No 90
>PRK05782 bifunctional sirohydrochlorin cobalt chelatase/precorrin-8X methylmutase; Validated
Probab=32.95 E-value=1.1e+02 Score=25.87 Aligned_cols=61 Identities=15% Similarity=0.135 Sum_probs=42.0
Q ss_pred CHHHHHH-HHHHHHHHhHhhcChHHHHHHHHHHHHhcCcceEEeeCCc-chhhhHhHHHHHHHHHHHHhhcc
Q 047942 9 SQSAIEE-RHSQLRSAIELSTSGYEVKLLKQRLHYLSNTAAVFKVGPC-KLPDKLNGARLTLEAVKRTMDQK 78 (132)
Q Consensus 9 ~~~~i~~-r~~~l~~~i~~~~~~~~~~~L~eRlarL~ggvavI~VGg~-Ei~erk~ri~dAlna~~aAl~~G 78 (132)
++..|+. -.+.|++++.....+.+..+.-+|+ |+--|. |+.+....=.||+.+..+|++.|
T Consensus 143 ~~~~Ie~~S~~iI~~~~~~~~~~~~~~~v~~R~---------ihatgD~~~~~~~~f~~~av~~g~~al~~g 205 (335)
T PRK05782 143 DPEEIEERSMNYILENLGLDVKDWREKRVIARA---------VYASGNLELAKYVKISNDLLDAGIEAIRAE 205 (335)
T ss_pred ChHHHHHHHHHHHHHHhccCCCCHHHHHHHHHH---------eecccCcchHhheEEChHHHHHHHHHHHCC
Confidence 4455665 4555666665433333444555665 777788 88877777799999999999997
No 91
>PF01402 RHH_1: Ribbon-helix-helix protein, copG family; InterPro: IPR002145 CopG, also known as RepA, is responsible for the regulation of plasmid copy number. It binds to the repAB promoter and controls synthesis of the plasmid replication initiator protein RepB. Many bacterial transcription regulation proteins bind DNA through a 'helix-turn-helix' motif, nevertheless CopG displays a fully defined HTH-motif structure that is involved not in DNA-binding, but in the maintenance of the intrinsic dimeric functional structure and cooperativity [, ].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2BJ3_B 2BJ8_A 2BJ1_A 2BJ9_A 2BJ7_B 1EA4_L 2CPG_C 1B01_B 2BA3_A 2K9I_B ....
Probab=32.49 E-value=74 Score=17.52 Aligned_cols=32 Identities=19% Similarity=0.218 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHhHhhcChHHHHHHHHHHH
Q 047942 10 QSAIEERHSQLRSAIELSTSGYEVKLLKQRLH 41 (132)
Q Consensus 10 ~~~i~~r~~~l~~~i~~~~~~~~~~~L~eRla 41 (132)
++...++++++.++...+.|++=++.+++-+.
T Consensus 7 ~~~~~~~l~~~a~~~g~s~s~~ir~ai~~~l~ 38 (39)
T PF01402_consen 7 PDELYERLDELAKELGRSRSELIREAIREYLE 38 (39)
T ss_dssp EHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh
Confidence 46778889999999999999998888887553
No 92
>COG2054 Uncharacterized archaeal kinase related to aspartokinases, uridylate kinases [General function prediction only]
Probab=32.30 E-value=44 Score=26.64 Aligned_cols=45 Identities=27% Similarity=0.477 Sum_probs=24.2
Q ss_pred EEeeCCcchhhhHhHHHHHHHHHHHHhhccccCCchHHHHHHHHHHhh
Q 047942 49 VFKVGPCKLPDKLNGARLTLEAVKRTMDQKIGPGAGIALLHVSKELDK 96 (132)
Q Consensus 49 vI~VGg~Ei~erk~ri~dAlna~~aAl~~GiVpGGG~all~a~~~L~~ 96 (132)
+++.||.-..++-..+..|+.++.- +==+|||||.+ ..+-+.+++
T Consensus 3 vVk~~Gs~~~~~~~~~~~ale~~~~--~i~iVpGGg~F-Ad~VR~id~ 47 (212)
T COG2054 3 VVKKGGSGVAERAAAVKEALENLQR--SILIVPGGGIF-ADLVRKIDE 47 (212)
T ss_pred eEEecCCChHHHHHHHHHHHHhhcc--eEEEecCchHH-HHHHHHHHH
Confidence 5677777333444444444444432 11389999975 355555554
No 93
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=32.05 E-value=72 Score=20.59 Aligned_cols=26 Identities=12% Similarity=0.037 Sum_probs=22.1
Q ss_pred chhhhHhHHHHHHHHHHHHhhccccC
Q 047942 56 KLPDKLNGARLTLEAVKRTMDQKIGP 81 (132)
Q Consensus 56 Ei~erk~ri~dAlna~~aAl~~GiVp 81 (132)
|+.-....|+|++...-.|+..|.||
T Consensus 16 el~Aed~AieDtiy~L~~al~~g~I~ 41 (65)
T PF09454_consen 16 ELVAEDHAIEDTIYYLDRALQRGSID 41 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSS-
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 55667789999999999999999885
No 94
>PRK00942 acetylglutamate kinase; Provisional
Probab=31.96 E-value=91 Score=25.01 Aligned_cols=45 Identities=13% Similarity=0.186 Sum_probs=27.1
Q ss_pred HHHhcCcceEEeeCCcch--hhhHhHHHHHHHHHHHHhhcc----ccCCchHHH
Q 047942 40 LHYLSNTAAVFKVGPCKL--PDKLNGARLTLEAVKRTMDQK----IGPGAGIAL 87 (132)
Q Consensus 40 larL~ggvavI~VGg~Ei--~erk~ri~dAlna~~aAl~~G----iVpGGG~al 87 (132)
+.++.+.+.|||+||+-+ ++....+-+-+.... +.| +|.|||...
T Consensus 18 i~~~~~~~iViK~GGs~l~~~~~~~~l~~~i~~l~---~~g~~vVlVhGgg~~~ 68 (283)
T PRK00942 18 IQRFMGKTIVIKYGGNAMTDEELKEAFARDIVLLK---QVGINPVVVHGGGPQI 68 (283)
T ss_pred HHHHcCCeEEEEEChHHhcCcchHHHHHHHHHHHH---HCCCCEEEEeCChHHH
Confidence 677788899999999933 333333333333222 333 778887744
No 95
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=31.10 E-value=62 Score=23.67 Aligned_cols=56 Identities=14% Similarity=0.167 Sum_probs=40.5
Q ss_pred HHHHHHhHhhcChHHHHHHHHHHHHhcCcceEEeeCCc----chhhhHhHHHHHHHHHHHHhhc
Q 047942 18 SQLRSAIELSTSGYEVKLLKQRLHYLSNTAAVFKVGPC----KLPDKLNGARLTLEAVKRTMDQ 77 (132)
Q Consensus 18 ~~l~~~i~~~~~~~~~~~L~eRlarL~ggvavI~VGg~----Ei~erk~ri~dAlna~~aAl~~ 77 (132)
+.-+-+.+.+.-+-||..|+-|||.|.|-.- |.- .+..|...++-||..-++-...
T Consensus 12 Ew~r~ErdR~~WeiERaEmkarIa~LEGE~r----~~e~l~~dL~rrIkMLE~aLkqER~k~~~ 71 (134)
T PF08232_consen 12 EWHRFERDRNQWEIERAEMKARIAFLEGERR----GQENLKKDLKRRIKMLEYALKQERAKYKK 71 (134)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3445566677778889999999999998732 222 5666777778888888876654
No 96
>COG5570 Uncharacterized small protein [Function unknown]
Probab=30.88 E-value=1.2e+02 Score=19.30 Aligned_cols=18 Identities=17% Similarity=0.185 Sum_probs=14.7
Q ss_pred chhhhHhHHHHHHHHHHH
Q 047942 56 KLPDKLNGARLTLEAVKR 73 (132)
Q Consensus 56 Ei~erk~ri~dAlna~~a 73 (132)
++++||.++.|.+.-.++
T Consensus 37 eLKRrKL~lKeeIEkLka 54 (57)
T COG5570 37 ELKRRKLRLKEEIEKLKA 54 (57)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 889999999988876654
No 97
>PRK05429 gamma-glutamyl kinase; Provisional
Probab=30.87 E-value=2.4e+02 Score=23.83 Aligned_cols=40 Identities=15% Similarity=0.108 Sum_probs=24.4
Q ss_pred ceEEeeCCcchhh-----hHhHHHHHHHHHHHHhhcc----ccCCchHH
Q 047942 47 AAVFKVGPCKLPD-----KLNGARLTLEAVKRTMDQK----IGPGAGIA 86 (132)
Q Consensus 47 vavI~VGg~Ei~e-----rk~ri~dAlna~~aAl~~G----iVpGGG~a 86 (132)
.-|||+||+-+.. +..++++..+.+....++| +|.||+.+
T Consensus 10 ~iVIKiGGs~l~~~~~~l~~~~i~~la~~I~~l~~~g~~vViV~sGai~ 58 (372)
T PRK05429 10 RIVVKVGSSLLTGGGGGLDRARIAELARQIAALRAAGHEVVLVSSGAVA 58 (372)
T ss_pred EEEEEeChhhccCCCCCcCHHHHHHHHHHHHHHHHCCCeEEEEcccHhh
Confidence 4689999993322 2455666666666555555 67766433
No 98
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=30.64 E-value=55 Score=21.35 Aligned_cols=18 Identities=33% Similarity=0.429 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHhHhhc
Q 047942 11 SAIEERHSQLRSAIELST 28 (132)
Q Consensus 11 ~~i~~r~~~l~~~i~~~~ 28 (132)
..+++||..|+.+|+...
T Consensus 28 ~El~eRIalLq~EIeRlk 45 (65)
T COG5509 28 AELEERIALLQAEIERLK 45 (65)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 356666666666665543
No 99
>PF12535 Nudix_N: Hydrolase of X-linked nucleoside diphosphate N terminal ; PDB: 3Q1P_B 3Q4I_B.
Probab=30.25 E-value=53 Score=20.79 Aligned_cols=31 Identities=13% Similarity=0.325 Sum_probs=17.9
Q ss_pred HHHHHH-HHHhHhhcChHHHHHHHHHHHHhcCc
Q 047942 15 ERHSQL-RSAIELSTSGYEVKLLKQRLHYLSNT 46 (132)
Q Consensus 15 ~r~~~l-~~~i~~~~~~~~~~~L~eRlarL~gg 46 (132)
.|++.| +.-+..++++||+|+.++ |..++.-
T Consensus 9 ~~lqaiAqtGL~Yskd~yD~ERy~~-lr~ia~e 40 (58)
T PF12535_consen 9 KRLQAIAQTGLAYSKDPYDRERYEE-LREIAAE 40 (58)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHHH-HHHHHHH
T ss_pred HHHHHHHHhhhhhCCChhhHHHHHH-HHHHHHH
Confidence 344433 234667899999999987 6666543
No 100
>cd01709 RT_like_1 RT_like_1: A subfamily of reverse transcriptases (RTs). An RT gene is usually indicative of a mobile element such as a retrotransposon or retrovirus. RTs occur in a variety of mobile elements, including retrotransposons, retroviruses, group II introns, bacterial msDNAs, hepadnaviruses, and caulimoviruses. These elements can be divided into two major groups. One group contains retroviruses and DNA viruses whose propagation involves an RNA intermediate. They are grouped together with transposable elements containing long terminal repeats (LTRs). The other group, also called poly(A)-type retrotransposons, contain fungal mitochondrial introns and transposable elements that lack LTRs.
Probab=30.15 E-value=50 Score=28.29 Aligned_cols=35 Identities=14% Similarity=0.262 Sum_probs=28.1
Q ss_pred CHHHHHHHHHHHHHHhHhhcChHH-HHHHHHHHHHh
Q 047942 9 SQSAIEERHSQLRSAIELSTSGYE-VKLLKQRLHYL 43 (132)
Q Consensus 9 ~~~~i~~r~~~l~~~i~~~~~~~~-~~~L~eRlarL 43 (132)
|++.++++|+||+.||....|-++ -+.++.-.+++
T Consensus 196 dq~~Vd~hi~el~~QL~~c~Sv~~wiq~WNsy~~~f 231 (346)
T cd01709 196 DQSQVDAHIDELRKQLDACKSVLSWIQAWNSYIGRF 231 (346)
T ss_pred eHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHH
Confidence 789999999999999998888777 45566666553
No 101
>KOG3495 consensus Mitochondrial F1F0-ATP synthase, subunit epsilon/ATP15 [Energy production and conversion]
Probab=29.78 E-value=98 Score=19.34 Aligned_cols=26 Identities=15% Similarity=0.102 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCC
Q 047942 103 GANISIKLFQHALKVFFTPYCNSVTV 128 (132)
Q Consensus 103 ~e~~Gi~iv~~AL~~p~~~ia~NaG~ 128 (132)
-.++..++|+++|+.+++.-+.+.+-
T Consensus 14 Ys~I~A~vvR~~LK~e~ka~a~k~~~ 39 (50)
T KOG3495|consen 14 YSQIAAQVVRQALKTELKAEALKRPQ 39 (50)
T ss_pred HHHHHHHHHHHHHhHHHHHHHhhCCC
Confidence 46788999999999999988877543
No 102
>PRK13881 conjugal transfer protein TrbI; Provisional
Probab=29.51 E-value=92 Score=27.84 Aligned_cols=39 Identities=18% Similarity=0.227 Sum_probs=33.9
Q ss_pred CCHHHHHHHHHHHHHHhHhhcChHHHHHHHHHHHHhcCc
Q 047942 8 GSQSAIEERHSQLRSAIELSTSGYEVKLLKQRLHYLSNT 46 (132)
Q Consensus 8 g~~~~i~~r~~~l~~~i~~~~~~~~~~~L~eRlarL~gg 46 (132)
...++.-.|++.+|.+++...++.--...++||+.|.+.
T Consensus 179 ~~~~e~la~~a~~~~~~~~~~~~d~~~~y~~~l~~~~~~ 217 (472)
T PRK13881 179 QTRDEMLARIAAVRQQIDAQRSNDPTAAYQARLAQLRGM 217 (472)
T ss_pred CchHHHHHHHHHHHHHHhhhhccCcHHHHHHHHHHHHhc
Confidence 367889999999999999988777778899999999963
No 103
>cd04254 AAK_UMPK-PyrH-Ec UMP kinase (UMPK)-Ec, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinase of E. coli (Ec) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial and chloroplast UMPKs (this CD) have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of this CD be
Probab=29.35 E-value=59 Score=25.32 Aligned_cols=40 Identities=18% Similarity=0.201 Sum_probs=25.2
Q ss_pred eEEeeCCcchh-h-----hHhHHHHHHHHHHHHhhcc----ccCCchHHH
Q 047942 48 AVFKVGPCKLP-D-----KLNGARLTLEAVKRTMDQK----IGPGAGIAL 87 (132)
Q Consensus 48 avI~VGg~Ei~-e-----rk~ri~dAlna~~aAl~~G----iVpGGG~al 87 (132)
-|||.||+-+. + ..++++...+.++...+.| +|.|||..+
T Consensus 3 iViKlGGs~itdk~~~~~~~~~i~~~a~~i~~~~~~~~~~viVhGgG~~~ 52 (231)
T cd04254 3 VLLKLSGEALAGENGFGIDPEVLNRIAREIKEVVDLGVEVAIVVGGGNIF 52 (231)
T ss_pred EEEEeCceEECCCCCCCCCHHHHHHHHHHHHHHHHCCCcEEEEECCCccc
Confidence 58999999332 1 2455566666665444443 799999653
No 104
>PF06102 DUF947: Domain of unknown function (DUF947); InterPro: IPR009292 This is a family of eukaryotic proteins with unknown function.
Probab=29.20 E-value=92 Score=23.67 Aligned_cols=64 Identities=13% Similarity=0.106 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHhHhhcChHHHHHHHHHHHHhcCcceEEeeCCcchhhhHhHHHHHHHHHHHHhhcccc
Q 047942 13 IEERHSQLRSAIELSTSGYEVKLLKQRLHYLSNTAAVFKVGPCKLPDKLNGARLTLEAVKRTMDQKIG 80 (132)
Q Consensus 13 i~~r~~~l~~~i~~~~~~~~~~~L~eRlarL~ggvavI~VGg~Ei~erk~ri~dAlna~~aAl~~GiV 80 (132)
-+.=+.+|+.+|..+.++.+++.|+..|.++..-...-. .-+..+..+...-.--+.++.+|-=
T Consensus 61 r~~E~~~Lk~~lk~~k~~~~~e~lk~~L~~~~~q~~~~~----~~~~~~e~~~~~kk~E~e~v~~GKk 124 (168)
T PF06102_consen 61 REKEIKELKKQLKKTKDPEEREELKRELQRMESQLKARK----RKDREREVKKEHKKEEREKVKQGKK 124 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 345578999999999999999999999999887643221 1122222223333334466777633
No 105
>KOG1981 consensus SOK1 kinase belonging to the STE20/SPS1/GC kinase family [Signal transduction mechanisms]
Probab=28.48 E-value=59 Score=29.30 Aligned_cols=28 Identities=25% Similarity=0.304 Sum_probs=25.4
Q ss_pred HHHHHHHHHHhHhhcChHHHHHHHHHHH
Q 047942 14 EERHSQLRSAIELSTSGYEVKLLKQRLH 41 (132)
Q Consensus 14 ~~r~~~l~~~i~~~~~~~~~~~L~eRla 41 (132)
.-+|+.+|-.|.....+|+|++.++||.
T Consensus 229 N~~I~~lrp~L~~~sveyEkk~Fqk~l~ 256 (513)
T KOG1981|consen 229 NYQIRILRPALQENSVEYEKKKFQKLLG 256 (513)
T ss_pred HHHHHHhhHHHHHhhHHHHHHHHHHHHh
Confidence 3578999999999999999999999997
No 106
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=28.26 E-value=1.4e+02 Score=20.85 Aligned_cols=36 Identities=6% Similarity=-0.040 Sum_probs=22.3
Q ss_pred CHHHHHHHHHHHHHHhHhhcChHHHHHHHHHHHHhcCc
Q 047942 9 SQSAIEERHSQLRSAIELSTSGYEVKLLKQRLHYLSNT 46 (132)
Q Consensus 9 ~~~~i~~r~~~l~~~i~~~~~~~~~~~L~eRlarL~gg 46 (132)
.-..+++.+++++++++... -+.+.|++.+.+|..+
T Consensus 28 ~~~~l~~q~~~~~~e~~~l~--~~n~~L~~eI~~L~~~ 63 (105)
T PRK00888 28 DYWRVNDQVAAQQQTNAKLK--ARNDQLFAEIDDLKGG 63 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhhCc
Confidence 44566666666666665543 5556677777777654
No 107
>cd04250 AAK_NAGK-C AAK_NAGK-C: N-Acetyl-L-glutamate kinase - cyclic (NAGK-C) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of arginine biosynthesis found in some bacteria and photosynthetic organisms using the non-acetylated, cyclic route of ornithine biosynthesis. In this pathway, glutamate is first N-acetylated and then phosphorylated by NAGK to give phosphoryl NAG, which is converted to NAG-ornithine. There are two variants of this pathway. In one, typified by the pathway in Thermotoga maritima and Pseudomonas aeruginosa, the acetyl group is recycled by reversible transacetylation from acetylornithine to glutamate. The phosphorylation of NAG by NAGK is feedback inhibited by arginine. In photosynthetic organisms, NAGK is the target of the nitrogen-signaling protein PII. Hexameric formation of NAGK domains appears to be essential to both arginine inhibition and NAGK-PII complex formation. NAGK-C are members of the Amino A
Probab=28.07 E-value=1.2e+02 Score=24.21 Aligned_cols=47 Identities=11% Similarity=0.191 Sum_probs=28.0
Q ss_pred HHHhcCcceEEeeCCcchh--hhHhHHHHHHHHHHHHhhcc--ccCCchHHH
Q 047942 40 LHYLSNTAAVFKVGPCKLP--DKLNGARLTLEAVKRTMDQK--IGPGAGIAL 87 (132)
Q Consensus 40 larL~ggvavI~VGg~Ei~--erk~ri~dAlna~~aAl~~G--iVpGGG~al 87 (132)
+.++.+.+.|||+||+.+. +...++.+-+... ...... +|.|||...
T Consensus 9 i~~~~~~~~ViKlGGs~i~~~~~~~~~~~~i~~l-~~~g~~~ViVhG~g~~~ 59 (279)
T cd04250 9 IQKFRGKTVVIKYGGNAMKDEELKESFARDIVLL-KYVGINPVVVHGGGPEI 59 (279)
T ss_pred HHHHcCCEEEEEEChHHhcCccHHHHHHHHHHHH-HHCCCCEEEEcCCcHHH
Confidence 5677888999999999443 2333443333322 222222 788888754
No 108
>cd07606 BAR_SFC_plant The Bin/Amphiphysin/Rvs (BAR) domain of the plant protein SCARFACE (SFC). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. The plant protein SCARFACE (SFC), also called VAscular Network 3 (VAN3), is a plant ACAP (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein), an Arf GTPase Activating Protein (GAP) that plays a role in the trafficking of auxin efflux regulators from the plasma membrane to the endosome. It is required for the normal vein patterning in leaves. SCF contains an N-terminal BAR domain, followed by a Pleckstrin Homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=27.52 E-value=2e+02 Score=22.48 Aligned_cols=90 Identities=13% Similarity=0.066 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHhcCcceEEeeCCc-chhhhHhHHHHHHHHHHHHhhcc-ccCCchHHHHHHHHHHhhhccCcHHHHHHHH
Q 047942 32 EVKLLKQRLHYLSNTAAVFKVGPC-KLPDKLNGARLTLEAVKRTMDQK-IGPGAGIALLHVSKELDKLQSANVGANISIK 109 (132)
Q Consensus 32 ~~~~L~eRlarL~ggvavI~VGg~-Ei~erk~ri~dAlna~~aAl~~G-iVpGGG~all~a~~~L~~~~~~~~~e~~Gi~ 109 (132)
|-+.|+.|+-||--+.-- .+.|. +.-.-....-++|......-++- +++=||.+|.+-+..|+++.+ ..+. =++
T Consensus 9 ~~~~l~~~~~Kl~K~~~~-~~~a~~~~~~a~~~Fa~~L~~f~~~~dD~~~~a~gg~~l~kF~~~l~ei~~--~~~~-L~~ 84 (202)
T cd07606 9 SADELRDRSLKLYKGCRK-YRDALGEAYDGDSAFAESLEEFGGGHDDPISVAVGGPVMTKFTSALREIGS--YKEV-LRS 84 (202)
T ss_pred hHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHhccchHHHHHHHHHHHHHH--HHHH-HHH
Confidence 344555555554332111 12222 33334444445555554332233 344478888888888877643 1222 245
Q ss_pred HHHHHHHHHHHHHHHh
Q 047942 110 LFQHALKVFFTPYCNS 125 (132)
Q Consensus 110 iv~~AL~~p~~~ia~N 125 (132)
=+.+.+..|+.+.+++
T Consensus 85 q~~~~l~~pL~~F~k~ 100 (202)
T cd07606 85 QVEHMLNDRLAQFADT 100 (202)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5778888898887753
No 109
>PRK10132 hypothetical protein; Provisional
Probab=27.08 E-value=2.3e+02 Score=20.05 Aligned_cols=58 Identities=9% Similarity=0.109 Sum_probs=37.1
Q ss_pred CHHHHHHHHHHHHHHhHhhcChHHHHHHHHHHHHhcCcceEEeeCCcchhhhHhHHHHHHHHHHHHhhc
Q 047942 9 SQSAIEERHSQLRSAIELSTSGYEVKLLKQRLHYLSNTAAVFKVGPCKLPDKLNGARLTLEAVKRTMDQ 77 (132)
Q Consensus 9 ~~~~i~~r~~~l~~~i~~~~~~~~~~~L~eRlarL~ggvavI~VGg~Ei~erk~ri~dAlna~~aAl~~ 77 (132)
+...++..+++|+..+..-. +.+++-| +-++. -++.+..+-+.++++.|+.++..+.+
T Consensus 6 ~~~~~~~q~e~L~~Dl~~L~-----~~le~ll-~~~~~-----~~~~~~~~lR~r~~~~L~~ar~~l~~ 63 (108)
T PRK10132 6 NRNDVDDGVQDIQNDVNQLA-----DSLESVL-KSWGS-----DAKGEAEAARRKAQALLKETRARMHG 63 (108)
T ss_pred ccchhhhHHHHHHHHHHHHH-----HHHHHHH-HHHhh-----hhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44567777777777776655 2333323 22222 12227888999999999999977765
No 110
>PRK10404 hypothetical protein; Provisional
Probab=26.95 E-value=48 Score=23.24 Aligned_cols=22 Identities=27% Similarity=0.308 Sum_probs=18.5
Q ss_pred chhhhHhHHHHHHHHHHHHhhc
Q 047942 56 KLPDKLNGARLTLEAVKRTMDQ 77 (132)
Q Consensus 56 Ei~erk~ri~dAlna~~aAl~~ 77 (132)
++++-+.+++..|+.+++.+.+
T Consensus 35 ~~~~lR~r~~~~L~~ar~~l~~ 56 (101)
T PRK10404 35 KYVELKARAEKALDDVKKRVSQ 56 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 7888899999999999976665
No 111
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=26.84 E-value=2.6e+02 Score=23.30 Aligned_cols=56 Identities=16% Similarity=0.073 Sum_probs=36.6
Q ss_pred HHHHhHhhcChHHHHHHHHHHHHhcCcceEEeeCCc----chhhhHhHHHHHHHHHHHHhhcc
Q 047942 20 LRSAIELSTSGYEVKLLKQRLHYLSNTAAVFKVGPC----KLPDKLNGARLTLEAVKRTMDQK 78 (132)
Q Consensus 20 l~~~i~~~~~~~~~~~L~eRlarL~ggvavI~VGg~----Ei~erk~ri~dAlna~~aAl~~G 78 (132)
+|...+.+ -.|.++-+||+||.-.|-+.+.=.. ++.+++..+..-..-+..++-.|
T Consensus 212 lrnreaa~---Kcr~rkLdrisrLEdkv~~lk~~n~~L~~~l~~l~~~v~e~k~~V~~hi~ng 271 (279)
T KOG0837|consen 212 LRNREAAS---KCRKRKLDRISRLEDKVKTLKIYNRDLASELSKLKEQVAELKQKVMEHIHNG 271 (279)
T ss_pred hhhHHHHH---HHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 44444333 3467777899999999999887766 56666555555555555555544
No 112
>PF14000 Packaging_FI: DNA packaging protein FI
Probab=26.35 E-value=72 Score=23.49 Aligned_cols=19 Identities=21% Similarity=0.482 Sum_probs=16.5
Q ss_pred CCCHHHHHHHHHHHHHHhH
Q 047942 7 AGSQSAIEERHSQLRSAIE 25 (132)
Q Consensus 7 ~g~~~~i~~r~~~l~~~i~ 25 (132)
.|..+.|++|++++.+++.
T Consensus 23 SGSaAeiaqRVAEwEEEl~ 41 (125)
T PF14000_consen 23 SGSAAEIAQRVAEWEEELD 41 (125)
T ss_pred cccHHHHHHHHHHHHHHHh
Confidence 4788899999999999998
No 113
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=26.07 E-value=1.7e+02 Score=23.35 Aligned_cols=57 Identities=18% Similarity=0.226 Sum_probs=28.1
Q ss_pred EEecCC-CCHHHHHHHHHHHHHH-hH----hhcChHHHHHHHHHHHHhcCcceEEeeCCc-chhh
Q 047942 2 VILGGA-GSQSAIEERHSQLRSA-IE----LSTSGYEVKLLKQRLHYLSNTAAVFKVGPC-KLPD 59 (132)
Q Consensus 2 ~ii~g~-g~~~~i~~r~~~l~~~-i~----~~~~~~~~~~L~eRlarL~ggvavI~VGg~-Ei~e 59 (132)
.|+.|. |....+.+.+..+++. ++ .++..-+-+.+-++++ .++--.+|-+||. -+.|
T Consensus 4 ~I~N~~~~~~~~~~~~~~~l~~~g~~~~v~~t~~~~~a~~~a~~~~-~~~~d~vv~~GGDGTi~e 67 (293)
T TIGR03702 4 LILNGKQADNEDVREAVGDLRDEGIQLHVRVTWEKGDAQRYVAEAL-ALGVSTVIAGGGDGTLRE 67 (293)
T ss_pred EEEeCCccchhHHHHHHHHHHHCCCeEEEEEecCCCCHHHHHHHHH-HcCCCEEEEEcCChHHHH
Confidence 356654 3334455555444432 11 1222233444544443 4555678899997 4443
No 114
>COG3765 WzzB Chain length determinant protein [Cell envelope biogenesis, outer membrane]
Probab=25.80 E-value=77 Score=27.20 Aligned_cols=82 Identities=13% Similarity=0.080 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHHhHhhcChHHHHHHHHHHHHhcCcceEEeeCCc------chhhhHhHHHHHHHHHHHHhhccccCCc
Q 047942 10 QSAIEERHSQLRSAIELSTSGYEVKLLKQRLHYLSNTAAVFKVGPC------KLPDKLNGARLTLEAVKRTMDQKIGPGA 83 (132)
Q Consensus 10 ~~~i~~r~~~l~~~i~~~~~~~~~~~L~eRlarL~ggvavI~VGg~------Ei~erk~ri~dAlna~~aAl~~GiVpGG 83 (132)
.+.++.|++-++........+ +-..++.++-+|++.|.-.++=.. +..-++++=..|+-....++=.|++++|
T Consensus 255 sd~l~~~le~~k~~~~~~~~n-~~qnrq~~~~~l~l~v~d~~~~~yRYl~~P~~Pvkrd~PrrA~ilil~~LiGgm~g~g 333 (347)
T COG3765 255 SDALEARLENEKAVPDVFELN-YLQNRQMLLDLLNLKVLDERFSTYRYLQKPTLPVKRDSPRRAIILILGALIGGMLGAG 333 (347)
T ss_pred cHHHHHHHHHhhccCcccccH-HHHHHHHHHHHhcccCcccceeEEEecCCCCCCCcCCCcchHHHHHHHHHHHHHHHHH
Confidence 478999999999999888888 445666677788866555544444 7777788888899999988888777666
Q ss_pred hHHHHHHHH
Q 047942 84 GIALLHVSK 92 (132)
Q Consensus 84 G~all~a~~ 92 (132)
++.+-++.+
T Consensus 334 ~vL~R~~lk 342 (347)
T COG3765 334 VVLLRNALK 342 (347)
T ss_pred HHHHHHHHH
Confidence 555544443
No 115
>PRK13848 conjugal transfer protein TraC; Provisional
Probab=25.70 E-value=1.5e+02 Score=21.00 Aligned_cols=59 Identities=14% Similarity=0.213 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHhHhhcChHHHHHHHHHHHHhcCcceEEeeCCcchhhhHhHHHHHHHHHHHHhhcc
Q 047942 10 QSAIEERHSQLRSAIELSTSGYEVKLLKQRLHYLSNTAAVFKVGPCKLPDKLNGARLTLEAVKRTMDQK 78 (132)
Q Consensus 10 ~~~i~~r~~~l~~~i~~~~~~~~~~~L~eRlarL~ggvavI~VGg~Ei~erk~ri~dAlna~~aAl~~G 78 (132)
...|..-|+.|+.++.... .+=.||++|+. ++-|=.||+=-..-+..++..+-+=.++|
T Consensus 5 ~s~I~~eI~kLqe~lk~~e-----~keAERigRiA-----lKAGLgeieI~d~eL~~aFeeiAaRFR~g 63 (98)
T PRK13848 5 SSKIREEIAKLQEQLKQAE-----TREAERIGRIA-----LKAGLGEIEIEEAELQAAFEELAKRFRGG 63 (98)
T ss_pred hHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHH-----HHcCccccccCHHHHHHHHHHHHHHHhcC
Confidence 4678888888888887654 45567887764 33332233323334455555555555555
No 116
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=25.52 E-value=1.2e+02 Score=26.18 Aligned_cols=31 Identities=29% Similarity=0.404 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHhHhhc----ChHHHHHHHHHHHHh
Q 047942 13 IEERHSQLRSAIELST----SGYEVKLLKQRLHYL 43 (132)
Q Consensus 13 i~~r~~~l~~~i~~~~----~~~~~~~L~eRlarL 43 (132)
++++|+.+++++..++ +++-.-.|+.|||+|
T Consensus 4 ieEkIk~iEeeia~tpknKaTe~hig~lKaklA~L 38 (365)
T COG1163 4 IEEKIKAIEEEIARTPKNKATEHHIGLLKAKLAEL 38 (365)
T ss_pred HHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHH
Confidence 6778888888887654 344455666666665
No 117
>COG0355 AtpC F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit) [Energy production and conversion]
Probab=25.28 E-value=1.9e+02 Score=21.28 Aligned_cols=36 Identities=17% Similarity=0.242 Sum_probs=25.6
Q ss_pred CHHHHHHHHHHHHHHhHhhcChHHHHH----HHHHHHHhc
Q 047942 9 SQSAIEERHSQLRSAIELSTSGYEVKL----LKQRLHYLS 44 (132)
Q Consensus 9 ~~~~i~~r~~~l~~~i~~~~~~~~~~~----L~eRlarL~ 44 (132)
|++.++++..+.++.++.+.++.+..+ |...+++|.
T Consensus 91 d~~~a~~~~~~ae~~l~~~~~~~~~~~a~~~l~~al~~L~ 130 (135)
T COG0355 91 DEARAEEAKERAEKELESAKDDKDYRRAEAALARALARLR 130 (135)
T ss_pred CHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhh
Confidence 678899999999999988766655444 444455554
No 118
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=25.17 E-value=3.1e+02 Score=20.93 Aligned_cols=16 Identities=13% Similarity=0.206 Sum_probs=8.7
Q ss_pred ccCCchHHHHHHHHHHhh
Q 047942 79 IGPGAGIALLHVSKELDK 96 (132)
Q Consensus 79 iVpGGG~all~a~~~L~~ 96 (132)
|+|| |... ++...|++
T Consensus 85 ~l~G-G~~~-~~~~~l~~ 100 (212)
T cd03146 85 YVGG-GNTF-NLLAQWRE 100 (212)
T ss_pred EECC-chHH-HHHHHHHH
Confidence 6666 6443 55555654
No 119
>PRK00539 atpC F0F1 ATP synthase subunit epsilon; Validated
Probab=25.14 E-value=1.9e+02 Score=20.97 Aligned_cols=33 Identities=15% Similarity=0.110 Sum_probs=23.3
Q ss_pred CHHHHHHHHHHHHHHhHhhcChHHHHHHHHHHH
Q 047942 9 SQSAIEERHSQLRSAIELSTSGYEVKLLKQRLH 41 (132)
Q Consensus 9 ~~~~i~~r~~~l~~~i~~~~~~~~~~~L~eRla 41 (132)
|.+..++..+..++.|+..+++.++.+.+..|.
T Consensus 90 D~~~a~~a~erAe~~L~~~~~~~~~~~a~~~L~ 122 (133)
T PRK00539 90 DYDETLKRKKELERKIKHTKDTKLNIKIEQNLM 122 (133)
T ss_pred CHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHH
Confidence 677888888888888887666666555544443
No 120
>PF10153 DUF2361: Uncharacterised conserved protein (DUF2361); InterPro: IPR019310 This entry represents the rRNA-processing protein EFG1 family. EFG1 is involved in rRNA processing.
Probab=24.82 E-value=1.3e+02 Score=21.71 Aligned_cols=16 Identities=25% Similarity=0.395 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHhcCc
Q 047942 31 YEVKLLKQRLHYLSNT 46 (132)
Q Consensus 31 ~~~~~L~eRlarL~gg 46 (132)
|||.|+..+|.+|.--
T Consensus 59 fERkKa~R~lkql~k~ 74 (114)
T PF10153_consen 59 FERKKATRKLKQLEKK 74 (114)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4455555555544433
No 121
>PRK14557 pyrH uridylate kinase; Provisional
Probab=24.23 E-value=1.5e+02 Score=23.72 Aligned_cols=41 Identities=12% Similarity=0.070 Sum_probs=27.8
Q ss_pred eEEeeCCc-chhh-----hHhHHHHHHHHHHHHhhcc----ccCCchHHHH
Q 047942 48 AVFKVGPC-KLPD-----KLNGARLTLEAVKRTMDQK----IGPGAGIALL 88 (132)
Q Consensus 48 avI~VGg~-Ei~e-----rk~ri~dAlna~~aAl~~G----iVpGGG~all 88 (132)
.||+.||. -.++ ...+++...+.++..++.| +|-|||..+.
T Consensus 7 iViKlGG~al~~~~~~~~~~~~i~~~a~~i~~~~~~g~~vvVVvGgGn~~r 57 (247)
T PRK14557 7 VLIKLSGGALADQTGNSFNSKRLEHIANEILSIVDLGIEVSIVIGGGNIFR 57 (247)
T ss_pred EEEEeCceeECCCCCCCcCHHHHHHHHHHHHHHHHcCCeEEEEECCcHHHH
Confidence 58999999 2221 2346777777777666654 8999997564
No 122
>PRK05279 N-acetylglutamate synthase; Validated
Probab=24.11 E-value=1.1e+02 Score=26.16 Aligned_cols=48 Identities=8% Similarity=0.025 Sum_probs=28.9
Q ss_pred HHHhcCcceEEeeCCcchhhhHhHHHHHHHHHHHHhhcc----ccCCchHHHHH
Q 047942 40 LHYLSNTAAVFKVGPCKLPDKLNGARLTLEAVKRTMDQK----IGPGAGIALLH 89 (132)
Q Consensus 40 larL~ggvavI~VGg~Ei~erk~ri~dAlna~~aAl~~G----iVpGGG~all~ 89 (132)
+.++.+..-||+.||..+.+. .+......+..-.+.| +|-|||-..=.
T Consensus 20 i~~~~~~~~VIk~GG~~l~~~--~~~~~~~~i~~l~~~g~~~VlVHGgg~~i~~ 71 (441)
T PRK05279 20 INAHRGKTFVIMLGGEAIAHG--NFSNIVHDIALLHSLGIRLVLVHGARPQIEE 71 (441)
T ss_pred HHHhCCCEEEEEECchhccCh--hHHHHHHHHHHHHHCCCeEEEECCCCHHHHH
Confidence 667889999999999944322 1233333333333345 67788765433
No 123
>TIGR03824 FlgM_jcvi flagellar biosynthesis anti-sigma factor FlgM. FlgM interacts with and inhibits the alternative sigma factor sigma(28) FliA. The C-terminus of FlgM contains the sigma(28)-binding domain.
Probab=23.89 E-value=1.2e+02 Score=20.55 Aligned_cols=28 Identities=14% Similarity=0.275 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHhHhhcChHHHHHHHHHH
Q 047942 13 IEERHSQLRSAIELSTSGYEVKLLKQRL 40 (132)
Q Consensus 13 i~~r~~~l~~~i~~~~~~~~~~~L~eRl 40 (132)
=.+||++|+.+|..=+-..|-+++-++|
T Consensus 64 ~~~kV~~ik~aI~~G~Y~vd~~~iA~~m 91 (95)
T TIGR03824 64 DAEKVAEIKAAIANGSYKVDAEKIADKL 91 (95)
T ss_pred hHHHHHHHHHHHHcCCCCCCHHHHHHHH
Confidence 3556666666665555444555554444
No 124
>PRK14623 hypothetical protein; Provisional
Probab=23.49 E-value=2.8e+02 Score=19.66 Aligned_cols=22 Identities=18% Similarity=0.128 Sum_probs=16.2
Q ss_pred HHHHHHHHHhc------CcceEEeeCCc
Q 047942 34 KLLKQRLHYLS------NTAAVFKVGPC 55 (132)
Q Consensus 34 ~~L~eRlarL~------ggvavI~VGg~ 55 (132)
++++++|+... ||...+.+.|.
T Consensus 18 ~~~Qeel~~~~v~g~sggG~VkVt~~G~ 45 (106)
T PRK14623 18 EATKKRLDTVLIDEQSSDGLLKVTVTAN 45 (106)
T ss_pred HHHHHHHhccEEEEEECCceEEEEEEcC
Confidence 56677777776 77777888777
No 125
>COG2082 CobH Precorrin isomerase [Coenzyme metabolism]
Probab=23.30 E-value=1.4e+02 Score=23.90 Aligned_cols=65 Identities=18% Similarity=0.129 Sum_probs=45.3
Q ss_pred CCHHHHHHH-HHHHHHHhHhhcChHHHHHHHHHHHHhcCcceEEeeCCc-chhhhHhHHHHHHHHHHHHhhcc--ccC
Q 047942 8 GSQSAIEER-HSQLRSAIELSTSGYEVKLLKQRLHYLSNTAAVFKVGPC-KLPDKLNGARLTLEAVKRTMDQK--IGP 81 (132)
Q Consensus 8 g~~~~i~~r-~~~l~~~i~~~~~~~~~~~L~eRlarL~ggvavI~VGg~-Ei~erk~ri~dAlna~~aAl~~G--iVp 81 (132)
.++..|++| .+-|+..++..--.....++-.|+ |+--|. |+.+-...=.|++.+.+.||++| ||.
T Consensus 6 ~~~~~I~~~S~~iI~~~~~~~~~s~~e~~i~~R~---------IhAtgD~e~~~~l~fs~~~i~ag~~AL~~g~~Iv~ 74 (210)
T COG2082 6 KDGQEIEERSFAIIRSELGEHRFSELEDRIIKRV---------IHATGDFEYADLLRFSPGAIEAGREALKAGCPIVV 74 (210)
T ss_pred cCcHHHHHHHHHHHHHhcCcccCChHHHHHHHHH---------HHhccCHhhHhhheeCCcHHHHHHHHHHcCCcEEE
Confidence 356788888 777888776654223345566666 666666 77766666688999999999997 554
No 126
>cd04241 AAK_FomA-like AAK_FomA-like: This CD includes a fosfomycin biosynthetic gene product, FomA, and similar proteins found in a wide range of organisms. Together, the fomA and fomB genes in the fosfomycin biosynthetic gene cluster of Streptomyces wedmorensis confer high-level fosfomycin resistance. FomA and FomB proteins converted fosfomycin to fosfomycin monophosphate and fosfomycin diphosphate in the presence of ATP and a magnesium ion, indicating that FomA and FomB catalyzed phosphorylations of fosfomycin and fosfomycin monophosphate, respectively. FomA and related sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK).
Probab=23.22 E-value=1.7e+02 Score=22.78 Aligned_cols=8 Identities=25% Similarity=0.600 Sum_probs=7.0
Q ss_pred eEEeeCCc
Q 047942 48 AVFKVGPC 55 (132)
Q Consensus 48 avI~VGg~ 55 (132)
.|||+||.
T Consensus 2 iVIKiGGs 9 (252)
T cd04241 2 IILKLGGS 9 (252)
T ss_pred EEEEEece
Confidence 58999998
No 127
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=23.21 E-value=1.9e+02 Score=18.40 Aligned_cols=20 Identities=20% Similarity=0.346 Sum_probs=16.1
Q ss_pred CHHHHHHHHHHHHHHhHhhc
Q 047942 9 SQSAIEERHSQLRSAIELST 28 (132)
Q Consensus 9 ~~~~i~~r~~~l~~~i~~~~ 28 (132)
.+--||+|+++|+.++..+.
T Consensus 26 ~~ltiEqRLa~LE~rL~~ae 45 (60)
T PF11471_consen 26 APLTIEQRLAALEQRLQAAE 45 (60)
T ss_pred ccCCHHHHHHHHHHHHHHHH
Confidence 34459999999999998765
No 128
>PF05015 Plasmid_killer: Plasmid maintenance system killer protein; InterPro: IPR007711 Several plasmids with proteic killer gene systems have been reported. All of them encode a stable toxin and an unstable antidote. Upon loss of the plasmid, the less stable inhibitor is inactivated more rapidly than the toxin, allowing the toxin to be activated. The activation of those systems result in cell filamentation and cessation of viable cell production. It has been verified that both the stable killer and the unstable inhibitor of the systems are short polypeptides. This family corresponds to the toxin.
Probab=22.97 E-value=83 Score=21.26 Aligned_cols=48 Identities=15% Similarity=0.158 Sum_probs=38.0
Q ss_pred CCHHHHHHHHHHHHHHhHhhcChHHHHHH-HHHHHHhcC---cceEEeeCCc
Q 047942 8 GSQSAIEERHSQLRSAIELSTSGYEVKLL-KQRLHYLSN---TAAVFKVGPC 55 (132)
Q Consensus 8 g~~~~i~~r~~~l~~~i~~~~~~~~~~~L-~eRlarL~g---gvavI~VGg~ 55 (132)
+-++++.+++...-.+|+.+++..|-..+ .-|+++|+| |-=-|.|.+.
T Consensus 21 ~~~~~~~~~~~~~L~~L~aa~~~~dl~~~p~~r~h~L~G~~~g~~Si~i~~~ 72 (93)
T PF05015_consen 21 KIPADIAKKLRRRLDQLDAATSLEDLRSPPSNRLHKLKGDRKGQWSIRINGN 72 (93)
T ss_pred CcCHHHHHHHHHHHHHHHhCCCHHHHhcCcCCCcccccCCCCCcEEEEeCCC
Confidence 34677888888888889999988887777 669999999 5666666665
No 129
>cd04246 AAK_AK-DapG-like AAK_AK-DapG-like: Amino Acid Kinase Superfamily (AAK), AK-DapG-like; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional enzymes found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species, as well as, the catalytic AK domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related isoenzymes. In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. The role of the AKI isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulati
Probab=22.30 E-value=3.7e+02 Score=20.76 Aligned_cols=38 Identities=11% Similarity=0.051 Sum_probs=18.4
Q ss_pred eEEeeCCcch--hhhHhHHHHHHHHHHH-HhhccccCCchH
Q 047942 48 AVFKVGPCKL--PDKLNGARLTLEAVKR-TMDQKIGPGAGI 85 (132)
Q Consensus 48 avI~VGg~Ei--~erk~ri~dAlna~~a-Al~~GiVpGGG~ 85 (132)
-|||+||.-+ .++..++-+.+...+. ..+--+|.|||.
T Consensus 2 iViK~GGs~l~~~~~~~~~~~~i~~l~~~g~~~viV~sg~g 42 (239)
T cd04246 2 IVQKFGGTSVADIERIKRVAERIKKAVKKGYQVVVVVSAMG 42 (239)
T ss_pred EEEEECccccCCHHHHHHHHHHHHHHHHcCCCEEEEECCCC
Confidence 5899999933 2333444444433321 222235566433
No 130
>COG2247 LytB Putative cell wall-binding domain [Cell envelope biogenesis, outer membrane]
Probab=21.85 E-value=89 Score=26.72 Aligned_cols=10 Identities=20% Similarity=0.338 Sum_probs=6.9
Q ss_pred cceEEeeCCc
Q 047942 46 TAAVFKVGPC 55 (132)
Q Consensus 46 gvavI~VGg~ 55 (132)
|+.+.++||.
T Consensus 100 GitV~RigG~ 109 (337)
T COG2247 100 GITVKRIGGA 109 (337)
T ss_pred CcEEEEecCc
Confidence 5667777776
No 131
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=21.77 E-value=1.9e+02 Score=20.83 Aligned_cols=29 Identities=14% Similarity=0.219 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHhHhhcChHHHHHHHH
Q 047942 10 QSAIEERHSQLRSAIELSTSGYEVKLLKQ 38 (132)
Q Consensus 10 ~~~i~~r~~~l~~~i~~~~~~~~~~~L~e 38 (132)
.+....||..|+.+|..+...-+.+|+..
T Consensus 53 ~~s~~qr~~eLqaki~ea~~~le~eK~ak 81 (107)
T PF09304_consen 53 NASRNQRIAELQAKIDEARRNLEDEKQAK 81 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667888888888887777666655543
No 132
>PF10444 Nbl1_Borealin_N: Nbl1 / Borealin N terminal; InterPro: IPR018851 This entry represents the N-terminal domain of borealin, and is also found in the N-terminal-Borealin-like (NBL; YHR199C-A) protein from Saccharomyces cerevisiae (Baker's yeast). NBL is a subunit of the conserved chromosomal passenger complex (CPC; Ipl1p-Sli15p-Bir1p-Nbl1p), which regulates mitotic chromosome segregation. It is not required for the kinase activity of the complex and it mediates the interaction of Sli15p and Bir1p [].; PDB: 2RAW_B 2RAX_Y 2QFA_B.
Probab=21.74 E-value=1.7e+02 Score=18.22 Aligned_cols=31 Identities=26% Similarity=0.297 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHhHhhcChHHHHHHHHHHHHh
Q 047942 12 AIEERHSQLRSAIELSTSGYEVKLLKQRLHYL 43 (132)
Q Consensus 12 ~i~~r~~~l~~~i~~~~~~~~~~~L~eRlarL 43 (132)
.++.|+.+++++.+......+ ..++-+|-|+
T Consensus 13 Ev~~r~~~lr~~~~~~~~~~~-~~~~~~l~ri 43 (59)
T PF10444_consen 13 EVEERIRRLRAQYENLLQSLR-NRLEMELLRI 43 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHc
Confidence 588999999998877654333 3344444443
No 133
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=21.19 E-value=2.6e+02 Score=22.33 Aligned_cols=54 Identities=9% Similarity=0.075 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHhHhhcChHHHHHHHHHHHHhcCcceEEeeCCc-chhhhHhHHHH
Q 047942 11 SAIEERHSQLRSAIELSTSGYEVKLLKQRLHYLSNTAAVFKVGPC-KLPDKLNGARL 66 (132)
Q Consensus 11 ~~i~~r~~~l~~~i~~~~~~~~~~~L~eRlarL~ggvavI~VGg~-Ei~erk~ri~d 66 (132)
.+++.+|.+++.+.+...-.+.-.+-++++.+..|++.. .++. .+++.+++|+.
T Consensus 123 ~~Le~Ki~e~~~~~~~l~ar~~~akA~~~v~~~~~~~s~--~sa~~~fer~e~kiee 177 (225)
T COG1842 123 AALEQKIAELRAKKEALKARKAAAKAQEKVNRSLGGGSS--SSAMAAFERMEEKIEE 177 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc--hhhHHHHHHHHHHHHH
Confidence 345556666666665555555566666677777777666 2332 55555555543
No 134
>TIGR02003 PTS-II-BC-unk1 PTS system, IIBC component. This model represents a family of fused B and C components of PTS enzyme II. This clade is a member of a larger family which contains enzyme II's specific for a variety of sugars including glucose (TIGR02002) and N-acetylglucosamine (TIGR01998). None of the members of this clade have been experimentally characterized. This clade includes sequences from Streptococcus and Enterococcus which also include a C-terminal A domain as well as Bacillus and Clostridium which do not. In nearly all cases, these species also contain an authentic glucose-specific PTS transporter.
Probab=20.89 E-value=81 Score=28.55 Aligned_cols=46 Identities=13% Similarity=0.258 Sum_probs=24.0
Q ss_pred ecCCCCHHHHHHHHHHHHHHhHhhcChHHHHHH-HHHHHHhcCcceEEeeCCc
Q 047942 4 LGGAGSQSAIEERHSQLRSAIELSTSGYEVKLL-KQRLHYLSNTAAVFKVGPC 55 (132)
Q Consensus 4 i~g~g~~~~i~~r~~~l~~~i~~~~~~~~~~~L-~eRlarL~ggvavI~VGg~ 55 (132)
+||..|-+.+..+.-.||-.+. |.++. +|.+-|..|...+++.|..
T Consensus 480 LGG~eNI~~v~~C~TRLRv~vk------D~~~vd~~~l~k~~G~~gvv~~~~~ 526 (548)
T TIGR02003 480 LGGAENIADVDACMTRLRVTVK------DLAKVAAEADWKKADALGLIQKDKG 526 (548)
T ss_pred cCCccccchhhhhhhheeeeec------ChhhcChHHHhhccCCcEEEEECCe
Confidence 3455555555555555555442 22344 2344455677677776655
No 135
>COG1561 Uncharacterized stress-induced protein [Function unknown]
Probab=20.84 E-value=4.4e+02 Score=22.10 Aligned_cols=27 Identities=7% Similarity=0.272 Sum_probs=22.7
Q ss_pred chhhhHhHHHHHHHHHHHHhhccccCC
Q 047942 56 KLPDKLNGARLTLEAVKRTMDQKIGPG 82 (132)
Q Consensus 56 Ei~erk~ri~dAlna~~aAl~~GiVpG 82 (132)
.+.|-.+|++.-+..++.-+++|-..|
T Consensus 216 DI~EEldRL~sHv~~~~~iL~~~g~vG 242 (290)
T COG1561 216 DIAEELDRLKSHVKEFRNILEKGGPVG 242 (290)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 789999999999999999997765444
No 136
>KOG3436 consensus 60S ribosomal protein L35 [Translation, ribosomal structure and biogenesis]
Probab=20.82 E-value=1.5e+02 Score=21.77 Aligned_cols=11 Identities=27% Similarity=0.286 Sum_probs=8.5
Q ss_pred HHHHHhcCcce
Q 047942 38 QRLHYLSNTAA 48 (132)
Q Consensus 38 eRlarL~ggva 48 (132)
=|.++.+||.+
T Consensus 31 LRv~K~tgg~~ 41 (123)
T KOG3436|consen 31 LRVAKVTGGAA 41 (123)
T ss_pred HHHHHhhccch
Confidence 38999999843
No 137
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=20.79 E-value=3.4e+02 Score=21.80 Aligned_cols=64 Identities=19% Similarity=0.251 Sum_probs=34.5
Q ss_pred CEEecCCCCHHHHHHHHHHHHHHhHhhcChHHHHHHHHHHHHhcCcceEEeeCCc-chhhhHhHHHHHHHHHH
Q 047942 1 MVILGGAGSQSAIEERHSQLRSAIELSTSGYEVKLLKQRLHYLSNTAAVFKVGPC-KLPDKLNGARLTLEAVK 72 (132)
Q Consensus 1 ~~ii~g~g~~~~i~~r~~~l~~~i~~~~~~~~~~~L~eRlarL~ggvavI~VGg~-Ei~erk~ri~dAlna~~ 72 (132)
|++||-.=|+. ...+++++..-+.++-.+.-. .-..-|..+|=||+. ...+...++..++..++
T Consensus 1 ~~~IGErin~~-----~~~~~~~~~~~d~~~i~~~A~---~~~~~GAdiIDVg~~~~~~eE~~r~~~~v~~l~ 65 (261)
T PRK07535 1 MIIIGERINGT-----RKSIAEAIEAKDAAFIQKLAL---KQAEAGADYLDVNAGTAVEEEPETMEWLVETVQ 65 (261)
T ss_pred CcEEEeccchh-----hHHHHHHHHcCCHHHHHHHHH---HHHHCCCCEEEECCCCCchhHHHHHHHHHHHHH
Confidence 55666433333 234555565543333333322 235789999999997 33343445655555554
No 138
>PF07352 Phage_Mu_Gam: Bacteriophage Mu Gam like protein; InterPro: IPR009951 The Gam protein, originally characterised in Bacteriophage Mu, protects linear double stranded DNA from exonuclease degradation in vitro and in vivo []. This protein is also found in many bacterial species as part of a suspected prophage. Further studies have shown that Gam is a functional counterpart of the eukaryotic Ku protein, which has key roles in DNA repair and in certain transposition events. Gam displays DNA binding characteristics remarkably similar to those of human Ku []. In addition, Gam can interfere with Ty1 retrotransposition in Saccharomyces cerevisiae (Baker's yeast). These data reveal structural and functional parallels between bacteriophage Gam and eukaryotic Ku and suggest that their functions have been evolutionarily conserved [].; GO: 0003690 double-stranded DNA binding, 0042262 DNA protection; PDB: 2P2U_B.
Probab=20.75 E-value=1.5e+02 Score=21.59 Aligned_cols=10 Identities=30% Similarity=0.248 Sum_probs=4.1
Q ss_pred HHHHHHHHHH
Q 047942 63 GARLTLEAVK 72 (132)
Q Consensus 63 ri~dAlna~~ 72 (132)
-.+..|..++
T Consensus 92 ~~~~vl~~Lk 101 (149)
T PF07352_consen 92 DEEKVLEWLK 101 (149)
T ss_dssp -HHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 3444444444
No 139
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=20.56 E-value=3e+02 Score=25.60 Aligned_cols=54 Identities=15% Similarity=0.071 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhHh-----hcChHHHHHHHHHHHHhcCcceEEeeCCc---chhhhHhHHHHHHHHHHH
Q 047942 10 QSAIEERHSQLRSAIEL-----STSGYEVKLLKQRLHYLSNTAAVFKVGPC---KLPDKLNGARLTLEAVKR 73 (132)
Q Consensus 10 ~~~i~~r~~~l~~~i~~-----~~~~~~~~~L~eRlarL~ggvavI~VGg~---Ei~erk~ri~dAlna~~a 73 (132)
.+++..++.+|+.+++. +..+.+|++++||-.+| +. |..|+.+.+++.++..++
T Consensus 583 ~~e~qrH~~~l~~~k~~QlQ~l~~~~eer~~i~e~a~~L----------a~R~eea~e~qe~L~~~~~~L~~ 644 (741)
T KOG4460|consen 583 KEEIQRHVKLLCDQKKKQLQDLSYCREERKSLREMAERL----------ADRYEEAKEKQEDLMNRMKKLLH 644 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHhHHHHHHHHHHHHh
No 140
>PF15178 TOM_sub5: Mitochondrial import receptor subunit TOM5 homolog
Probab=20.56 E-value=2.3e+02 Score=17.61 Aligned_cols=33 Identities=15% Similarity=0.112 Sum_probs=23.1
Q ss_pred chhhhHhHH-HHHHHHHHHHhhccccCCchHHHHHHHHHHh
Q 047942 56 KLPDKLNGA-RLTLEAVKRTMDQKIGPGAGIALLHVSKELD 95 (132)
Q Consensus 56 Ei~erk~ri-~dAlna~~aAl~~GiVpGGG~all~a~~~L~ 95 (132)
.-.|.|.+. +|-++++++-+-- +||+++.+.+-
T Consensus 12 DPeE~k~kmR~dvissvrnFliy-------VALlR~tpyvl 45 (51)
T PF15178_consen 12 DPEEMKRKMREDVISSVRNFLIY-------VALLRVTPYVL 45 (51)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH-------HHHHHhChHHH
Confidence 334555555 7899999977654 78888887764
No 141
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated
Probab=20.44 E-value=2.8e+02 Score=23.63 Aligned_cols=66 Identities=18% Similarity=0.240 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHhHhhcChHHHHHHHHHHHHh--cCcceEEe--eCCc----------chhhhHhHHHHHHHHHHHHh
Q 047942 10 QSAIEERHSQLRSAIELSTSGYEVKLLKQRLHYL--SNTAAVFK--VGPC----------KLPDKLNGARLTLEAVKRTM 75 (132)
Q Consensus 10 ~~~i~~r~~~l~~~i~~~~~~~~~~~L~eRlarL--~ggvavI~--VGg~----------Ei~erk~ri~dAlna~~aAl 75 (132)
.+.|++-.++....|..+++..+-+.+ |+..| .|-++-+. .|.. .+++-|..++++++.-++.+
T Consensus 2 ~~~~~~~~~~~~~~i~~~~~~~~l~~~--r~~~lgkkg~l~~~~~~l~~l~~eer~~~G~~~n~~k~~~~~~~~~~~~~l 79 (339)
T PRK00488 2 MEDLEELVEEALAAIAAASDLEALEAL--RVKYLGKKGELTELLKGLGKLPPEERKEAGALINELKQAIEAALEERKEEL 79 (339)
T ss_pred hHHHHHHHHHHHHHHHHCCCHHHHHHH--HHHHhCCchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777788888889888877766666 44444 23233222 1111 55666667777776666555
Q ss_pred hc
Q 047942 76 DQ 77 (132)
Q Consensus 76 ~~ 77 (132)
+.
T Consensus 80 ~~ 81 (339)
T PRK00488 80 EA 81 (339)
T ss_pred HH
Confidence 44
No 142
>PF01923 Cob_adeno_trans: Cobalamin adenosyltransferase; InterPro: IPR002779 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents EutT- and PduO-type ATP:cob(I)alamin adenosyltransferases. PduO functions to convert cobalamin to AdoCbl for 1,2-propanediol degradation [], while EutT produces AdoCbl for ethanolamine utilisation []. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 2ZHY_A 2ZHZ_B 3KE5_C 3KE4_B 2AH6_C 1NOG_A 2IDX_C 3GAH_A 3CI1_A 3CI3_A ....
Probab=20.31 E-value=59 Score=24.25 Aligned_cols=74 Identities=12% Similarity=0.062 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHhHhhcChHHHHHHHHHHHHhcCcceEEeeCC-c-chhhhHhHHHHHHHHHHHHhh---ccccCCchH
Q 047942 12 AIEERHSQLRSAIELSTSGYEVKLLKQRLHYLSNTAAVFKVGP-C-KLPDKLNGARLTLEAVKRTMD---QKIGPGAGI 85 (132)
Q Consensus 12 ~i~~r~~~l~~~i~~~~~~~~~~~L~eRlarL~ggvavI~VGg-~-Ei~erk~ri~dAlna~~aAl~---~GiVpGGG~ 85 (132)
...+.+-..+..+....-...-+++++.|-.+.+-+|.-.-.. . -.++--..+++.++.....+. .-++|||+.
T Consensus 34 El~a~igla~~~~~~~~~~~~L~~iq~~L~~l~~~la~~~~~~~~~i~~~~v~~Le~~i~~~~~~~~~~~~Filpgg~~ 112 (163)
T PF01923_consen 34 ELNAFIGLARSEIKEEELREILERIQNELFDLGAELATPEEDEEPEITEEDVQELEEEIDEYSEELPPLKGFILPGGSP 112 (163)
T ss_dssp HHHHHHHHHHTHCTTHHHHHHHHHHHHHHHHHHHHHHTTTTSSSCS--HHHHHHHHHHHHHHHHHS-SESSCEES-SSH
T ss_pred HHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHcCCCcccccccCHHHHHHHHHHHHHHHhcCCCCceeEeCCCCH
Confidence 3344444444444322222344566777777777666532111 1 223334444555555554433 338888754
Done!