BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047943
(479 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 59/121 (48%), Gaps = 15/121 (12%)
Query: 85 NLERLNILNCTNLAYIPSCIHNFNNLRSVIGLCLRNTAIEEVPSSIESLTKLEKLDLSYC 144
NL+ L L T + +P+ I N NL+S L +RN+ + + +I L KLE+LDL C
Sbjct: 184 NLQSLR-LEWTGIRSLPASIANLQNLKS---LKIRNSPLSALGPAIHHLPKLEELDLRGC 239
Query: 145 TRLKG----------LCKLDLGYCSKFECFPEIIEKMERLRSVDLQS-TEVEELPSSMEN 193
T L+ L +L L CS P I ++ +L +DL+ + LPS +
Sbjct: 240 TALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQ 299
Query: 194 L 194
L
Sbjct: 300 L 300
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 82/194 (42%), Gaps = 23/194 (11%)
Query: 92 LNCTNLAYIPSCIHNFNNLRSVIGLCLRNTAIEEVPSSIESLTKLEKLDLSYCTRLKGLC 151
++ L +P F L + L L + +P+SI SL +L +L + C L L
Sbjct: 111 IDAAGLXELPDTXQQFAGLET---LTLARNPLRALPASIASLNRLRELSIRACPELTELP 167
Query: 152 KLDLGYCSKFECFPEIIEKMERLRSVDLQSTEVEELPSSMENLEGLKDLPDSLPNLKSLQ 211
+ + E + + L+S+ L+ T + LP+S+ NL+ NLKSL+
Sbjct: 168 EPLASTDASGEH-----QGLVNLQSLRLEWTGIRSLPASIANLQ----------NLKSLK 212
Query: 212 FLNVERLF---SIADLDKLEDLSIXX-XXXXXXXXXXXXXXXXTKLVLT-CCDVIEIPQD 266
N +I L KLE+L + +L+L C +++ +P D
Sbjct: 213 IRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLD 272
Query: 267 IGCLSSLELLFLCG 280
I L+ LE L L G
Sbjct: 273 IHRLTQLEKLDLRG 286
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 43/92 (46%), Gaps = 4/92 (4%)
Query: 63 LKYINLHNSQYLTGMPDLSETPNLERLNILNCTNLAYIPSCIHNFNNLRSVIGLCLRN-T 121
LK + + NS P + P LE L++ CT L P L+ +I L++ +
Sbjct: 208 LKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLI---LKDCS 264
Query: 122 AIEEVPSSIESLTKLEKLDLSYCTRLKGLCKL 153
+ +P I LT+LEKLDL C L L L
Sbjct: 265 NLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSL 296
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 35.4 bits (80), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 55/106 (51%), Gaps = 8/106 (7%)
Query: 124 EEVPSSIESLT----KLEKLDLSYCTRLKGLCKLDLGYCSKFECFPEIIEKMERLRSVDL 179
+++P++I L +L +L + TR L LD+G+ + + PE+ +K+ L+ ++L
Sbjct: 31 DDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNL 90
Query: 180 QSTEVEELPSSM----ENLEGLKDLPDSLPNLKSLQFLNVERLFSI 221
Q E+ +L NL L + +S+ +K+ F+ + L ++
Sbjct: 91 QHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITL 136
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 35.4 bits (80), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 55/106 (51%), Gaps = 8/106 (7%)
Query: 124 EEVPSSIESLT----KLEKLDLSYCTRLKGLCKLDLGYCSKFECFPEIIEKMERLRSVDL 179
+++P++I L +L +L + TR L LD+G+ + + PE+ +K+ L+ ++L
Sbjct: 21 DDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNL 80
Query: 180 QSTEVEELPSSM----ENLEGLKDLPDSLPNLKSLQFLNVERLFSI 221
Q E+ +L NL L + +S+ +K+ F+ + L ++
Sbjct: 81 QHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITL 126
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 35.0 bits (79), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 55/106 (51%), Gaps = 8/106 (7%)
Query: 124 EEVPSSIESLT----KLEKLDLSYCTRLKGLCKLDLGYCSKFECFPEIIEKMERLRSVDL 179
+++P++I L +L +L + TR L LD+G+ + + PE+ +K+ L+ ++L
Sbjct: 26 DDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNL 85
Query: 180 QSTEVEELPSSM----ENLEGLKDLPDSLPNLKSLQFLNVERLFSI 221
Q E+ +L NL L + +S+ +K+ F+ + L ++
Sbjct: 86 QHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITL 131
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 68/144 (47%), Gaps = 25/144 (17%)
Query: 93 NCTNLAYIPSCIHNFNNLRSVIGLCLRNTAIEEVPSSIESLTKLE--KLDLSY------C 144
NC +L + + I N L+ + + I E+ + ++SL +L+ + +SY C
Sbjct: 343 NCGHLTELETLILQMNQLKEL-------SKIAEMTTQMKSLQQLDISQNSVSYDEKKGDC 395
Query: 145 TRLKGLCKLDLGYC----SKFECFPEIIEKMERLRSVDLQSTEVEELPSSMENLEGLKDL 200
+ K L L++ + F C P R++ +DL S +++ +P + LE L++L
Sbjct: 396 SWTKSLLSLNMSSNILTDTIFRCLPP------RIKVLDLHSNKIKSIPKQVVKLEALQEL 449
Query: 201 PDSLPNLKSLQFLNVERLFSIADL 224
+ LKS+ +RL S+ +
Sbjct: 450 NVASNQLKSVPDGIFDRLTSLQKI 473
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 73/162 (45%), Gaps = 24/162 (14%)
Query: 84 PNLERLNILNCTNLAYIPSCIHNFNNLRSVIGLCLRNTAIEEVPS-SIESLTKLEKLDLS 142
P+L L + + L +P+ F L + L LRN IE +PS + + L +LDL
Sbjct: 83 PSLNTLELFD-NRLTTVPT--QAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLG 139
Query: 143 YCTRL--------KGLCK---LDLGYCSKFECFPEIIEKMERLRSVDLQSTEVEEL-PSS 190
RL +GL L+LG C+ + P + + RL ++L ++ + P S
Sbjct: 140 ELKRLEYISEAAFEGLVNLRYLNLGMCN-LKDIPNLT-ALVRLEELELSGNRLDLIRPGS 197
Query: 191 MENLEGLKDLPDSLPNLKSLQFLNVERLFSIADLDKLEDLSI 232
+ L L+ L L Q +ER + DL LE+L++
Sbjct: 198 FQGLTSLRKLW-----LMHAQVATIER-NAFDDLKSLEELNL 233
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 79/189 (41%), Gaps = 51/189 (26%)
Query: 48 SKIETIWEVKKEAPKLKYINLHNSQYLTGMPDLS-ETPNLERLNILNCTNLAYIPSCIHN 106
S ++++W E +Y+ S G+ D+S E+ NL++ H
Sbjct: 224 STLQSLWLGTFEDTDDQYLT---SATFEGLCDMSVESINLQK----------------HR 264
Query: 107 FNNLRSVIGLC--------LRNTAIEEVPSSIESLTKLEKLDLSYCTRLKGLCKLDL--- 155
F++L S C L + +PS IE + L+KL L+ LC+++
Sbjct: 265 FSDLSSSTFRCFTRVQELDLTAAHLNGLPSGIEGMNSLKKLVLN-ANSFDQLCQINAASF 323
Query: 156 ---------GYCSKFECFPEIIEKMERLRSVDLQSTEVEELPSSMENLEGLKDLPDSLPN 206
G K + +EK+E L+ +DL +++E S NL+ L N
Sbjct: 324 PSLRDLYIKGNMRKLDLGTRCLEKLENLQKLDLSHSDIE--ASDCCNLQ--------LKN 373
Query: 207 LKSLQFLNV 215
L+ LQ+LN+
Sbjct: 374 LRHLQYLNL 382
Score = 28.5 bits (62), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 13/76 (17%)
Query: 159 SKFECFPEIIEKMERLRSVDLQSTEVEELPSSMENLEGLKDLP------DSLPNLKSLQF 212
S F CF R++ +DL + + LPS +E + LK L D L + + F
Sbjct: 271 STFRCF-------TRVQELDLTAAHLNGLPSGIEGMNSLKKLVLNANSFDQLCQINAASF 323
Query: 213 LNVERLFSIADLDKLE 228
++ L+ ++ KL+
Sbjct: 324 PSLRDLYIKGNMRKLD 339
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 73/162 (45%), Gaps = 24/162 (14%)
Query: 84 PNLERLNILNCTNLAYIPSCIHNFNNLRSVIGLCLRNTAIEEVPS-SIESLTKLEKLDLS 142
P+L L + + L +P+ F L + L LRN IE +PS + + L +LDL
Sbjct: 83 PSLNTLELFD-NRLTTVPT--QAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLG 139
Query: 143 YCTRL--------KGLCK---LDLGYCSKFECFPEIIEKMERLRSVDLQSTEVEEL-PSS 190
RL +GL L+LG C+ + P + + RL ++L ++ + P S
Sbjct: 140 ELKRLEYISEAAFEGLVNLRYLNLGMCN-LKDIPNLT-ALVRLEELELSGNRLDLIRPGS 197
Query: 191 MENLEGLKDLPDSLPNLKSLQFLNVERLFSIADLDKLEDLSI 232
+ L L+ L L Q +ER + DL LE+L++
Sbjct: 198 FQGLTSLRKLW-----LMHAQVATIER-NAFDDLKSLEELNL 233
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 32.0 bits (71), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 80/175 (45%), Gaps = 33/175 (18%)
Query: 61 PKLKYINLHNSQYLTGMPDLSETPNLERLNILNCTNLAYIPSCIHNFNNLRSVIGLCLRN 120
P ++Y+ L ++ L + L E NL L IL L +P+ + F+ L ++ L L
Sbjct: 63 PNVRYLALGGNK-LHDISALKELTNLTYL-ILTGNQLQSLPNGV--FDKLTNLKELVLVE 118
Query: 121 TAIEEVPSSI-ESLTKLEKLDLSYCTRLKGLCKLDLGYCSKFECFPE-IIEKMERLRSVD 178
++ +P + + LT L L L Y ++ + P+ + +K+ L +D
Sbjct: 119 NQLQSLPDGVFDKLTNLTYLYL---------------YHNQLQSLPKGVFDKLTNLTRLD 163
Query: 179 LQSTEVEELPSSMENLEGLKDLPDSLPNLKSLQFLNVERLFSIAD--LDKLEDLS 231
L + +++ LP EG+ D L LK L LN +L S+ D D+L L+
Sbjct: 164 LDNNQLQSLP------EGVF---DKLTQLKQLS-LNDNQLKSVPDGVFDRLTSLT 208
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 32.0 bits (71), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 52/106 (49%), Gaps = 8/106 (7%)
Query: 124 EEVPSSIESLT----KLEKLDLSYCTRLKGLCKLDLGYCSKFECFPEIIEKMERLRSVDL 179
+++PS+I L +L +L + TR L LD G+ S + PE+ + + L+ ++L
Sbjct: 21 DDLPSNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNL 80
Query: 180 QSTEVEELPSSM----ENLEGLKDLPDSLPNLKSLQFLNVERLFSI 221
Q E+ ++ NL L + +S+ +KS F N + L +
Sbjct: 81 QHNELSQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKL 126
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 32.0 bits (71), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 55/131 (41%), Gaps = 28/131 (21%)
Query: 97 LAYIPSCIHNFNNLRSVIGLCLRNTAIEEVPSSIESLTKLEKLDLSYCTRLKGLCKLDLG 156
L IPS F L + L LRN IE +PS R+ L +LDLG
Sbjct: 135 LTVIPSGA--FEYLSKLRELWLRNNPIESIPSYA-------------FNRVPSLMRLDLG 179
Query: 157 YCSKFECFPE-IIEKMERLRSVDLQSTEVEELPSSMENLEGLKDL-----------PDSL 204
K E E E + L+ ++L ++++P ++ L GL++L P S
Sbjct: 180 ELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP-NLTPLVGLEELEMSGNHFPEIRPGSF 238
Query: 205 PNLKSLQFLNV 215
L SL+ L V
Sbjct: 239 HGLSSLKKLWV 249
>pdb|3R7T|A Chain A, Crystal Structure Of Adenylosuccinate Synthetase From
Campylobacter Jejuni
Length = 419
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 42/92 (45%), Gaps = 15/92 (16%)
Query: 136 LEKLDLSYCTRLKGLCKLDLGYCSKFECFPEIIEKMERLRSVDLQSTEVEELPSSMENLE 195
+ + + Y RL GL L L + F EK++ R+ + + E++ +PS +EN++
Sbjct: 309 FDAVAVRYTARLNGLDALSLXKLDVLDGF----EKIKICRAYEYKGXEIDYIPSDLENVQ 364
Query: 196 GLKDLPDSLPNLKSLQFLNVERLFSIADLDKL 227
+ + D +++F I D D L
Sbjct: 365 PIYEEXDGW-----------DKVFGIKDYDLL 385
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 45/100 (45%), Gaps = 25/100 (25%)
Query: 147 LKGLCKLDLGY------------CSKFECFPEIIEKMERLRSVDLQSTEVEELPSSMENL 194
LKGLC++ + + F+CF + L+ +DL +T ++ LPS M+ L
Sbjct: 245 LKGLCEMSVESLNLQEHRFSDISSTTFQCFTQ-------LQELDLTATHLKGLPSGMKGL 297
Query: 195 EGLKDLP------DSLPNLKSLQFLNVERLFSIADLDKLE 228
LK L D L + + F ++ L+ ++ KL
Sbjct: 298 NLLKKLVLSVNHFDQLCQISAANFPSLTHLYIRGNVKKLH 337
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 76/153 (49%), Gaps = 20/153 (13%)
Query: 62 KLKYINLHNSQYL-TGMPDLSETPNLERLNILNCTNLAYIPSCIHNFNNLRSVIGLCLRN 120
+L Y+N + Q L G+ E NLE L + + L +P I F+ L ++ L L
Sbjct: 64 RLLYLNDNKLQTLPAGI--FKELKNLETLWVTD-NKLQALP--IGVFDQLVNLAELRLDR 118
Query: 121 TAIEEVPSSI-ESLTKLEKLDLSY----------CTRLKGLCKLDLGYCSKFECFPE-II 168
++ +P + +SLTKL L L Y +L L +L L Y ++ + PE
Sbjct: 119 NQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRL-YNNQLKRVPEGAF 177
Query: 169 EKMERLRSVDLQSTEVEELP-SSMENLEGLKDL 200
+K+ L+++ L + +++ +P + ++LE LK L
Sbjct: 178 DKLTELKTLKLDNNQLKRVPEGAFDSLEKLKML 210
>pdb|4H08|A Chain A, Crystal Structure Of A Putative Hydrolase (Bt3161) From
Bacteroides Thetaiotaomicron Vpi-5482 At 1.80 A
Resolution
Length = 200
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 27/59 (45%)
Query: 56 VKKEAPKLKYINLHNSQYLTGMPDLSETPNLERLNILNCTNLAYIPSCIHNFNNLRSVI 114
++K APK K I + + TG P ERLN+ N L +I N+L V+
Sbjct: 105 IRKYAPKAKLIWANTTPVRTGEGXKEFAPITERLNVRNQIALKHINRASIEVNDLWKVV 163
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 116 LCLRNTAIEEVPSSIESLTKLEKLDLSYCTRLKGLCKLDLGYCSKFECF 164
L L ++ E+P+ I++L+ L LDLS+ RL L +LG C + + F
Sbjct: 252 LYLNGNSLTELPAEIKNLSNLRVLDLSH-NRLTSLPA-ELGSCFQLKYF 298
>pdb|3NEV|A Chain A, Crystal Structure Of Yage, A Prophage Protein From E. Coli
K12 In Complex With Kdgal
pdb|3NEV|B Chain B, Crystal Structure Of Yage, A Prophage Protein From E. Coli
K12 In Complex With Kdgal
pdb|3NEV|C Chain C, Crystal Structure Of Yage, A Prophage Protein From E. Coli
K12 In Complex With Kdgal
pdb|3NEV|D Chain D, Crystal Structure Of Yage, A Prophage Protein From E. Coli
K12 In Complex With Kdgal
Length = 298
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 24/48 (50%)
Query: 163 CFPEIIEKMERLRSVDLQSTEVEELPSSMENLEGLKDLPDSLPNLKSL 210
P ++ L DL V+ L S N+ G+KD DS+ +L+S+
Sbjct: 128 TLPVMLYNFPALTGQDLTPALVKTLADSRSNIIGIKDTIDSVAHLRSM 175
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,295,410
Number of Sequences: 62578
Number of extensions: 442314
Number of successful extensions: 958
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 920
Number of HSP's gapped (non-prelim): 58
length of query: 479
length of database: 14,973,337
effective HSP length: 103
effective length of query: 376
effective length of database: 8,527,803
effective search space: 3206453928
effective search space used: 3206453928
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)