Query 047943
Match_columns 479
No_of_seqs 412 out of 3763
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 04:48:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047943.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047943hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 100.0 5E-43 1.1E-47 397.5 35.0 399 3-438 576-1029(1153)
2 PLN00113 leucine-rich repeat r 99.9 1.9E-26 4.2E-31 260.7 17.7 293 10-309 88-440 (968)
3 PLN00113 leucine-rich repeat r 99.9 9.3E-26 2E-30 255.2 18.1 300 7-310 204-560 (968)
4 PLN03210 Resistant to P. syrin 99.9 2.1E-22 4.6E-27 229.3 23.1 302 10-344 553-907 (1153)
5 KOG0444 Cytoskeletal regulator 99.9 2.3E-25 4.9E-30 222.1 -7.8 290 6-313 23-355 (1255)
6 KOG0472 Leucine-rich repeat pr 99.9 9E-26 2E-30 214.9 -10.4 310 6-328 105-533 (565)
7 KOG0444 Cytoskeletal regulator 99.9 3.5E-25 7.5E-30 220.8 -8.2 287 7-316 70-381 (1255)
8 KOG4194 Membrane glycoprotein 99.9 6.5E-23 1.4E-27 203.5 1.3 292 14-311 76-430 (873)
9 KOG4194 Membrane glycoprotein 99.8 7.6E-22 1.6E-26 196.0 1.8 278 9-306 143-448 (873)
10 KOG0472 Leucine-rich repeat pr 99.8 4.1E-23 8.9E-28 196.9 -9.7 248 20-287 49-313 (565)
11 PRK15387 E3 ubiquitin-protein 99.8 7.9E-18 1.7E-22 180.1 15.3 250 15-310 200-458 (788)
12 KOG0618 Serine/threonine phosp 99.7 1.3E-19 2.9E-24 188.8 -4.5 285 17-310 46-443 (1081)
13 PRK15387 E3 ubiquitin-protein 99.7 2.7E-16 5.8E-21 168.4 15.1 232 14-286 220-460 (788)
14 PRK15370 E3 ubiquitin-protein 99.7 5.4E-17 1.2E-21 174.6 9.1 146 13-189 175-321 (754)
15 PRK15370 E3 ubiquitin-protein 99.7 4.8E-16 1E-20 167.3 15.3 217 39-309 179-400 (754)
16 KOG0618 Serine/threonine phosp 99.7 1.1E-18 2.3E-23 182.2 -5.6 300 17-326 22-433 (1081)
17 KOG4237 Extracellular matrix p 99.5 2.5E-16 5.4E-21 150.7 -3.7 133 7-142 58-196 (498)
18 KOG0617 Ras suppressor protein 99.5 4.8E-16 1E-20 132.9 -1.8 161 17-195 34-196 (264)
19 KOG0617 Ras suppressor protein 99.5 2.3E-16 5E-21 134.9 -4.3 168 76-293 25-194 (264)
20 cd00116 LRR_RI Leucine-rich re 99.4 1.4E-14 3E-19 143.1 0.7 241 36-300 21-312 (319)
21 KOG4237 Extracellular matrix p 99.3 4.8E-14 1E-18 135.2 -4.3 119 21-143 51-173 (498)
22 cd00116 LRR_RI Leucine-rich re 99.3 3.4E-13 7.3E-18 133.2 1.3 245 17-283 24-319 (319)
23 KOG4658 Apoptotic ATPase [Sign 99.2 1.9E-11 4.2E-16 134.0 6.3 110 31-144 516-628 (889)
24 KOG4658 Apoptotic ATPase [Sign 99.0 2.1E-10 4.4E-15 126.0 5.0 302 16-344 523-861 (889)
25 COG4886 Leucine-rich repeat (L 99.0 4.9E-10 1.1E-14 114.3 6.0 191 65-287 97-293 (394)
26 COG4886 Leucine-rich repeat (L 99.0 1.8E-09 3.8E-14 110.2 9.8 196 42-265 97-294 (394)
27 KOG0532 Leucine-rich repeat (L 98.9 1.9E-11 4.2E-16 122.4 -6.1 167 87-287 78-250 (722)
28 KOG0532 Leucine-rich repeat (L 98.9 4.3E-11 9.4E-16 120.0 -4.5 210 21-281 55-270 (722)
29 KOG3207 Beta-tubulin folding c 98.8 9.3E-10 2E-14 107.4 -0.2 205 36-284 119-339 (505)
30 KOG3207 Beta-tubulin folding c 98.7 3.2E-09 6.9E-14 103.7 1.7 209 58-311 118-340 (505)
31 PF14580 LRR_9: Leucine-rich r 98.7 5.9E-09 1.3E-13 92.7 3.2 134 28-180 9-148 (175)
32 PF14580 LRR_9: Leucine-rich r 98.7 1.2E-08 2.6E-13 90.8 4.3 124 16-143 19-149 (175)
33 KOG1259 Nischarin, modulator o 98.7 4.7E-09 1E-13 97.9 1.5 129 112-287 285-415 (490)
34 KOG4341 F-box protein containi 98.6 2.4E-10 5.2E-15 110.9 -11.4 26 363-388 445-470 (483)
35 KOG1909 Ran GTPase-activating 98.6 1.2E-08 2.6E-13 97.2 0.2 242 36-309 28-310 (382)
36 KOG1259 Nischarin, modulator o 98.5 1.5E-08 3.3E-13 94.6 0.1 122 173-310 285-412 (490)
37 KOG0531 Protein phosphatase 1, 98.4 6.3E-08 1.4E-12 99.4 -0.1 215 37-309 71-289 (414)
38 PLN03150 hypothetical protein; 98.3 1.5E-06 3.2E-11 93.6 7.7 81 224-307 441-525 (623)
39 KOG4341 F-box protein containi 98.2 2.6E-08 5.6E-13 97.0 -7.1 61 38-98 138-204 (483)
40 PF13855 LRR_8: Leucine rich r 98.2 3.6E-07 7.9E-12 66.6 0.2 57 226-282 2-60 (61)
41 KOG0531 Protein phosphatase 1, 98.2 3.7E-07 8E-12 93.7 0.1 120 18-143 74-195 (414)
42 PF13855 LRR_8: Leucine rich r 98.2 1.2E-06 2.6E-11 63.8 2.8 60 248-309 1-61 (61)
43 PRK15386 type III secretion pr 98.1 6.6E-06 1.4E-10 82.2 7.8 124 37-182 51-187 (426)
44 PRK15386 type III secretion pr 98.1 1.2E-05 2.5E-10 80.5 9.1 28 150-183 96-123 (426)
45 PLN03150 hypothetical protein; 98.1 6.7E-06 1.4E-10 88.6 8.0 63 40-102 420-484 (623)
46 KOG2120 SCF ubiquitin ligase, 98.1 7.3E-08 1.6E-12 90.0 -6.1 59 39-97 186-247 (419)
47 KOG2120 SCF ubiquitin ligase, 98.1 3E-07 6.5E-12 86.0 -2.9 73 113-185 187-273 (419)
48 KOG1859 Leucine-rich repeat pr 98.1 9.9E-08 2.1E-12 98.7 -6.7 115 159-309 174-291 (1096)
49 PF12799 LRR_4: Leucine Rich r 98.0 7.1E-06 1.5E-10 55.3 3.3 40 248-287 1-40 (44)
50 KOG1909 Ran GTPase-activating 97.9 3.9E-06 8.3E-11 80.4 0.8 139 149-311 93-255 (382)
51 KOG2982 Uncharacterized conser 97.7 9.2E-06 2E-10 76.3 0.8 61 224-284 198-262 (418)
52 KOG1859 Leucine-rich repeat pr 97.7 1.4E-06 3.1E-11 90.3 -5.4 88 219-311 181-268 (1096)
53 PF12799 LRR_4: Leucine Rich r 97.5 6.7E-05 1.4E-09 50.5 2.8 35 38-72 1-35 (44)
54 KOG3665 ZYG-1-like serine/thre 97.4 4.7E-05 1E-09 82.2 1.2 124 60-186 121-264 (699)
55 KOG3665 ZYG-1-like serine/thre 97.2 0.00011 2.3E-09 79.5 1.2 85 164-262 165-264 (699)
56 KOG4579 Leucine-rich repeat (L 97.0 8.4E-05 1.8E-09 62.2 -1.7 82 224-308 52-134 (177)
57 KOG2739 Leucine-rich acidic nu 96.9 0.00028 6.2E-09 65.4 0.7 78 17-95 19-102 (260)
58 COG5238 RNA1 Ran GTPase-activa 96.8 0.00028 6.1E-09 65.7 -0.4 243 36-310 28-316 (388)
59 KOG1644 U2-associated snRNP A' 96.7 0.0029 6.3E-08 56.6 5.7 76 19-95 22-99 (233)
60 KOG2982 Uncharacterized conser 96.7 0.00025 5.3E-09 66.9 -1.1 76 18-93 47-130 (418)
61 KOG1644 U2-associated snRNP A' 96.7 0.0035 7.5E-08 56.2 5.8 87 10-96 36-125 (233)
62 KOG4579 Leucine-rich repeat (L 96.7 0.00011 2.5E-09 61.4 -3.3 108 17-129 28-141 (177)
63 COG5238 RNA1 Ran GTPase-activa 96.6 0.0013 2.9E-08 61.4 2.7 140 146-308 90-253 (388)
64 KOG1947 Leucine rich repeat pr 96.1 0.00062 1.3E-08 71.0 -2.7 227 17-261 189-440 (482)
65 KOG2739 Leucine-rich acidic nu 96.0 0.0054 1.2E-07 57.1 3.0 53 246-300 63-121 (260)
66 KOG1947 Leucine rich repeat pr 95.9 0.0014 3.1E-08 68.3 -1.0 36 59-94 186-224 (482)
67 PF07725 LRR_3: Leucine Rich R 95.9 0.0054 1.2E-07 33.3 1.6 20 39-58 1-20 (20)
68 KOG2123 Uncharacterized conser 95.5 0.00082 1.8E-08 62.9 -4.3 101 60-178 18-123 (388)
69 PF00560 LRR_1: Leucine Rich R 94.7 0.01 2.2E-07 33.3 0.4 20 272-292 1-20 (22)
70 PF13504 LRR_7: Leucine rich r 94.4 0.021 4.6E-07 29.8 1.1 16 272-287 2-17 (17)
71 PF13306 LRR_5: Leucine rich r 94.4 0.093 2E-06 43.9 5.7 74 223-300 33-108 (129)
72 PF00560 LRR_1: Leucine Rich R 94.2 0.019 4.2E-07 32.1 0.7 21 173-193 1-21 (22)
73 PF13306 LRR_5: Leucine rich r 93.8 0.24 5.3E-06 41.2 7.1 55 36-93 10-67 (129)
74 PF13504 LRR_7: Leucine rich r 92.4 0.084 1.8E-06 27.5 1.3 17 248-264 1-17 (17)
75 KOG2123 Uncharacterized conser 91.3 0.029 6.3E-07 52.8 -2.0 106 224-333 18-127 (388)
76 KOG3864 Uncharacterized conser 90.0 0.13 2.7E-06 46.4 0.9 57 244-300 121-181 (221)
77 smart00369 LRR_TYP Leucine-ric 89.1 0.41 8.8E-06 27.8 2.4 18 270-287 1-18 (26)
78 smart00370 LRR Leucine-rich re 89.1 0.41 8.8E-06 27.8 2.4 18 270-287 1-18 (26)
79 KOG3864 Uncharacterized conser 88.9 0.15 3.3E-06 45.9 0.6 70 30-99 92-166 (221)
80 smart00370 LRR Leucine-rich re 83.4 0.77 1.7E-05 26.5 1.5 21 171-191 1-21 (26)
81 smart00369 LRR_TYP Leucine-ric 83.4 0.77 1.7E-05 26.5 1.5 21 171-191 1-21 (26)
82 KOG0473 Leucine-rich repeat pr 80.4 0.047 1E-06 50.2 -6.7 84 57-144 38-121 (326)
83 smart00364 LRR_BAC Leucine-ric 77.8 1.5 3.3E-05 25.6 1.4 17 271-287 2-18 (26)
84 KOG4308 LRR-containing protein 74.2 0.034 7.3E-07 57.8 -10.8 187 86-310 89-303 (478)
85 smart00365 LRR_SD22 Leucine-ri 71.5 3.4 7.5E-05 24.1 1.8 18 270-287 1-18 (26)
86 KOG0473 Leucine-rich repeat pr 70.0 0.1 2.2E-06 48.0 -7.3 61 223-283 63-123 (326)
87 smart00367 LRR_CC Leucine-rich 65.2 4.4 9.6E-05 23.4 1.4 14 84-97 2-15 (26)
88 PF13516 LRR_6: Leucine Rich r 64.4 3.6 7.7E-05 23.2 0.9 15 270-284 1-15 (24)
89 smart00368 LRR_RI Leucine rich 51.1 13 0.00028 21.9 1.8 14 271-284 2-15 (28)
90 KOG3763 mRNA export factor TAP 49.3 4.7 0.0001 42.0 -0.5 16 397-412 443-458 (585)
91 KOG4308 LRR-containing protein 44.9 0.8 1.7E-05 47.7 -7.0 18 55-72 109-126 (478)
92 KOG3763 mRNA export factor TAP 33.4 20 0.00043 37.5 1.1 36 59-94 216-254 (585)
93 PF05725 FNIP: FNIP Repeat; I 30.2 1.1E+02 0.0023 20.1 3.9 35 12-46 8-42 (44)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=5e-43 Score=397.51 Aligned_cols=399 Identities=28% Similarity=0.465 Sum_probs=311.6
Q ss_pred CceecCCccCCCccCceEEEecCCCCCCCCCCCCCCCceEEECCCCCCcccccccCCCCCCcEEEccCCCCCCCCCCCCC
Q 047943 3 SKLHIDQSLEYLPEELRYLHWYEYPLKTLPSNFEPENLLELNLPYSKIETIWEVKKEAPKLKYINLHNSQYLTGMPDLSE 82 (479)
Q Consensus 3 ~~~~~~~~~~~l~~~Lr~L~~~~~~l~~lp~~~~~~~L~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~ 82 (479)
.++++|++++++|++||+|+|++|+++++|..|.+++|++|+|++++++.+|++++.+++|+.|+|+++..++.+|+++.
T Consensus 576 ~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~ 655 (1153)
T PLN03210 576 VRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSM 655 (1153)
T ss_pred ceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCcccc
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcEEeecCCCCCCCCCccccccCCccccceeeccCC-CceecCccccCCCCCCEEeccCCCCC-------CCCCEEe
Q 047943 83 TPNLERLNILNCTNLAYIPSCIHNFNNLRSVIGLCLRNT-AIEEVPSSIESLTKLEKLDLSYCTRL-------KGLCKLD 154 (479)
Q Consensus 83 l~~L~~L~L~~c~~l~~~p~~l~~l~~L~~L~~L~L~~~-~i~~lp~~i~~l~~L~~L~L~~c~~L-------~~L~~L~ 154 (479)
+++|++|++++|..+..+|..++++.+ |+.|++++| .+..+|..+ ++++|+.|++++|..+ .+|+.|+
T Consensus 656 l~~Le~L~L~~c~~L~~lp~si~~L~~---L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~ 731 (1153)
T PLN03210 656 ATNLETLKLSDCSSLVELPSSIQYLNK---LEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDISTNISWLD 731 (1153)
T ss_pred CCcccEEEecCCCCccccchhhhccCC---CCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccccCCcCeee
Confidence 999999999999999999988776655 555999886 567888766 7889999999988654 3567888
Q ss_pred cCCCCCCCccchhhhccccCCeeeccCccccccC--------------cc-----cccccCCCCCCCCCCCCCCCCeeec
Q 047943 155 LGYCSKFECFPEIIEKMERLRSVDLQSTEVEELP--------------SS-----MENLEGLKDLPDSLPNLKSLQFLNV 215 (479)
Q Consensus 155 L~~c~~l~~~p~~~~~l~~L~~L~L~~~~i~~lp--------------~~-----i~~l~~L~~lp~~l~~l~~L~~L~l 215 (479)
++++. +..+|..+ .+++|++|.+.++....+. .+ +.++..+..+|..++++++|+.|++
T Consensus 732 L~~n~-i~~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~L 809 (1153)
T PLN03210 732 LDETA-IEEFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEI 809 (1153)
T ss_pred cCCCc-cccccccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEEC
Confidence 88765 45666544 4667777777653322111 11 1222334447777888888888888
Q ss_pred CCC------ccccccCCCceeecCCCC-CCCCCcccCCCCCCCEEEcCCCCCccCCccCCCCCCCCEEeCCCCc-CCccC
Q 047943 216 ERL------FSIADLDKLEDLSISGRR-GLILPPLLSGLSSLTKLVLTCCDVIEIPQDIGCLSSLELLFLCGNN-FSKFT 287 (479)
Q Consensus 216 ~~l------~~l~~l~~L~~L~l~~~~-~~~lp~~~~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~-l~~lp 287 (479)
+++ +...++++|+.|++++|. ...+|.. .++|+.|+|++|.+.++|.++..+++|+.|++++|+ ++.+|
T Consensus 810 s~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~ 886 (1153)
T PLN03210 810 ENCINLETLPTGINLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVS 886 (1153)
T ss_pred CCCCCcCeeCCCCCccccCEEECCCCCcccccccc---ccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccC
Confidence 763 222356788888888887 3455542 367888899988888888888889999999998876 88888
Q ss_pred hhhhcCCCchhHHHHHhhhhhhhhccCCccccCCCccccccC--C---------------CCc--cccccCCccccchhh
Q 047943 288 CKYQSTFTAEKTLLELLQYATVITRASSSSTLFSCNELQAAP--V---------------FAR--ASIMSTRIRRIHIET 348 (479)
Q Consensus 288 ~~~i~~l~~L~~L~~~L~~n~~~~~~~~~~~l~~C~~L~~lp--~---------------lp~--~~~~~~C~~L~~~~~ 348 (479)
..+..+++|+.+ .+.+|.+|+.++ . +|+ ...|.||++|+....
T Consensus 887 -~~~~~L~~L~~L-----------------~l~~C~~L~~~~l~~~~~~~~~~~~n~~~~~p~~~~l~f~nC~~L~~~a~ 948 (1153)
T PLN03210 887 -LNISKLKHLETV-----------------DFSDCGALTEASWNGSPSEVAMATDNIHSKLPSTVCINFINCFNLDQEAL 948 (1153)
T ss_pred -cccccccCCCee-----------------ecCCCcccccccCCCCchhhhhhcccccccCCchhccccccccCCCchhh
Confidence 778888888888 556666665432 1 221 245889999974332
Q ss_pred HHHHHhhcccCCCCCCeeeecCCCCCCCccccCCCCceEE-EECCCCCCCCccceeeEEEEEeecCCCccCCCceeEEEE
Q 047943 349 IRIWRGQNREYDEPPGISNCLPGSQIPDWFRNQCSGSSIT-IQLPDYYCNENLIGIALCAIISFEEDSDAHDEYFNVVCN 427 (479)
Q Consensus 349 i~~~~~~~~~~~~~~~~~~~~pg~~iP~wf~~~~~g~s~~-i~lp~~~~~~~~~g~~~c~v~~~~~~~~~~~~~~~~~c~ 427 (479)
+ +.+ .....+++||.++|+||.||+.|++++ |.+|+.|.+..|.||++|+|+++....+. ...+.+.|.
T Consensus 949 l---~~~------~~~~~~~l~g~evp~~f~hr~~g~sl~~i~l~~~~~~~~~~~f~~c~v~~~~~~~~~-~~~~~~~~~ 1018 (1153)
T PLN03210 949 L---QQQ------SIFKQLILSGEEVPSYFTHRTTGASLTNIPLLHISPCQPFFRFRACAVVDSESFFII-SVSFDIQVC 1018 (1153)
T ss_pred h---ccc------ccceEEECCCccCchhccCCcccceeeeeccCCcccCCCccceEEEEEEecCccccC-CCceeEEEE
Confidence 2 111 123457899999999999999999998 99999999888999999999998876443 346899999
Q ss_pred EEEeecCCccc
Q 047943 428 YSFKIKSRSQT 438 (479)
Q Consensus 428 ~~~~~~~~~~~ 438 (479)
|+|++++|.+.
T Consensus 1019 c~~~~~~~~~~ 1029 (1153)
T PLN03210 1019 CRFIDRLGNHF 1029 (1153)
T ss_pred EEEECCCCCcc
Confidence 99998877654
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.94 E-value=1.9e-26 Score=260.72 Aligned_cols=293 Identities=24% Similarity=0.301 Sum_probs=129.1
Q ss_pred ccCCCccCceEEEecCCCCC-CCCCC-C-CCCCceEEECCCCCCc-----------------------ccccccCCCCCC
Q 047943 10 SLEYLPEELRYLHWYEYPLK-TLPSN-F-EPENLLELNLPYSKIE-----------------------TIWEVKKEAPKL 63 (479)
Q Consensus 10 ~~~~l~~~Lr~L~~~~~~l~-~lp~~-~-~~~~L~~L~L~~s~i~-----------------------~l~~~~~~l~~L 63 (479)
.+..++ .|+.|+++++.+. .+|.. + .+++|++|+|++|++. .+|..++.+++|
T Consensus 88 ~~~~l~-~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L 166 (968)
T PLN00113 88 AIFRLP-YIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSL 166 (968)
T ss_pred HHhCCC-CCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCC
Confidence 344444 5566666555553 44443 2 4555555555555443 234444455555
Q ss_pred cEEEccCCCCCCCCC-CCCCCCCCcEEeecCCCCCCCCCccccccCCccccceeeccCCCce-ecCccccCCCCCCEEec
Q 047943 64 KYINLHNSQYLTGMP-DLSETPNLERLNILNCTNLAYIPSCIHNFNNLRSVIGLCLRNTAIE-EVPSSIESLTKLEKLDL 141 (479)
Q Consensus 64 ~~L~Ls~~~~l~~~p-~l~~l~~L~~L~L~~c~~l~~~p~~l~~l~~L~~L~~L~L~~~~i~-~lp~~i~~l~~L~~L~L 141 (479)
+.|++++|.....+| .++++++|++|++++|.....+|..++++.+ |+.|++++|.+. .+|..++.+++|+.|++
T Consensus 167 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~---L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 243 (968)
T PLN00113 167 KVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKS---LKWIYLGYNNLSGEIPYEIGGLTSLNHLDL 243 (968)
T ss_pred CEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCC---ccEEECcCCccCCcCChhHhcCCCCCEEEC
Confidence 555555554444444 3445555555555554444444444433322 233445554443 34444555555555555
Q ss_pred cCCC----------CCCCCCEEecCCCCCCCccchhhhccccCCeeeccCccccc-cCcccccccCCCC-----------
Q 047943 142 SYCT----------RLKGLCKLDLGYCSKFECFPEIIEKMERLRSVDLQSTEVEE-LPSSMENLEGLKD----------- 199 (479)
Q Consensus 142 ~~c~----------~L~~L~~L~L~~c~~l~~~p~~~~~l~~L~~L~L~~~~i~~-lp~~i~~l~~L~~----------- 199 (479)
++|. ++++|+.|++++|...+.+|..+.++++|++|++++|.+.+ +|..+.++++|+.
T Consensus 244 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~ 323 (968)
T PLN00113 244 VYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGK 323 (968)
T ss_pred cCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCc
Confidence 4431 23344445554444444444444444455555554444442 4444444443332
Q ss_pred CCCCCCCCCCCCeeecCCC-------ccccccCCCceeecCCCCC-CCCCcccCCCCCCCEEEcCCCCCcc-CCccCCCC
Q 047943 200 LPDSLPNLKSLQFLNVERL-------FSIADLDKLEDLSISGRRG-LILPPLLSGLSSLTKLVLTCCDVIE-IPQDIGCL 270 (479)
Q Consensus 200 lp~~l~~l~~L~~L~l~~l-------~~l~~l~~L~~L~l~~~~~-~~lp~~~~~l~~L~~L~L~~~~l~~-lp~~l~~l 270 (479)
+|..+..+++|+.|++++. ..++.+++|+.|++++|.. ..+|..+..+++|+.|++++|.+.+ +|..++.+
T Consensus 324 ~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~ 403 (968)
T PLN00113 324 IPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGAC 403 (968)
T ss_pred CChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCC
Confidence 2333444444444444431 1233344444444444431 2233333333333333333333332 33333444
Q ss_pred CCCCEEeCCCCcCC-ccChhhhcCCCchhHHHHHhhhhhh
Q 047943 271 SSLELLFLCGNNFS-KFTCKYQSTFTAEKTLLELLQYATV 309 (479)
Q Consensus 271 ~~L~~L~Ls~n~l~-~lp~~~i~~l~~L~~L~~~L~~n~~ 309 (479)
++|+.|++++|.++ .+| ..+..+++|+.| ++++|.+
T Consensus 404 ~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L--~Ls~N~l 440 (968)
T PLN00113 404 RSLRRVRLQDNSFSGELP-SEFTKLPLVYFL--DISNNNL 440 (968)
T ss_pred CCCCEEECcCCEeeeECC-hhHhcCCCCCEE--ECcCCcc
Confidence 44444444444433 333 344444444444 4444433
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.93 E-value=9.3e-26 Score=255.18 Aligned_cols=300 Identities=23% Similarity=0.254 Sum_probs=167.2
Q ss_pred cCCccCCCccCceEEEecCCCCC-CCCCCC-CCCCceEEECCCCCCc-ccccccCCCCCCcEEEccCCCCCCCCC-CCCC
Q 047943 7 IDQSLEYLPEELRYLHWYEYPLK-TLPSNF-EPENLLELNLPYSKIE-TIWEVKKEAPKLKYINLHNSQYLTGMP-DLSE 82 (479)
Q Consensus 7 ~~~~~~~l~~~Lr~L~~~~~~l~-~lp~~~-~~~~L~~L~L~~s~i~-~l~~~~~~l~~L~~L~Ls~~~~l~~~p-~l~~ 82 (479)
+|+.+..++ +|+.|+++++.+. .+|..+ .+++|++|++++|++. .+|..++++++|+.|++++|.....+| .+.+
T Consensus 204 ~p~~l~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~ 282 (968)
T PLN00113 204 IPRELGQMK-SLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFS 282 (968)
T ss_pred CChHHcCcC-CccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhh
Confidence 456666665 6777777777764 556655 6777777777777765 456666777777777777766555555 4566
Q ss_pred CCCCcEEeecCCCCCCCCCccccccCCcc---------------------ccceeeccCCCce-ecCccccCCCCCCEEe
Q 047943 83 TPNLERLNILNCTNLAYIPSCIHNFNNLR---------------------SVIGLCLRNTAIE-EVPSSIESLTKLEKLD 140 (479)
Q Consensus 83 l~~L~~L~L~~c~~l~~~p~~l~~l~~L~---------------------~L~~L~L~~~~i~-~lp~~i~~l~~L~~L~ 140 (479)
+++|++|++++|.....+|..+.++.+|+ .|+.|++++|.+. .+|..++.+++|+.|+
T Consensus 283 l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~ 362 (968)
T PLN00113 283 LQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLD 362 (968)
T ss_pred ccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEE
Confidence 66666666666655555555444333322 2333455555443 3444455555555555
Q ss_pred ccCCC----------CCCCCCEEecCCCCCCCccchhhhccccCCeeeccCccccc-cCcccccccCCCC----------
Q 047943 141 LSYCT----------RLKGLCKLDLGYCSKFECFPEIIEKMERLRSVDLQSTEVEE-LPSSMENLEGLKD---------- 199 (479)
Q Consensus 141 L~~c~----------~L~~L~~L~L~~c~~l~~~p~~~~~l~~L~~L~L~~~~i~~-lp~~i~~l~~L~~---------- 199 (479)
+++|. .+.+|+.|++++|...+.+|..++.+++|+.|++++|.+.+ +|..+..++.|+.
T Consensus 363 Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 442 (968)
T PLN00113 363 LSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQG 442 (968)
T ss_pred CCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccC
Confidence 54432 23344555555555555555555566666666666665553 5555555554443
Q ss_pred -CCCCCCCCCCCCeeecCCC------ccccccCCCceeecCCCCC-CCCCcccCCCCCCCEEEcCCCCCcc-CCccCCCC
Q 047943 200 -LPDSLPNLKSLQFLNVERL------FSIADLDKLEDLSISGRRG-LILPPLLSGLSSLTKLVLTCCDVIE-IPQDIGCL 270 (479)
Q Consensus 200 -lp~~l~~l~~L~~L~l~~l------~~l~~l~~L~~L~l~~~~~-~~lp~~~~~l~~L~~L~L~~~~l~~-lp~~l~~l 270 (479)
+|..+..+++|+.|++++. +.....++|+.|++++|.. ...|..+..+++|+.|++++|.+.+ +|..++.+
T Consensus 443 ~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 522 (968)
T PLN00113 443 RINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSC 522 (968)
T ss_pred ccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCc
Confidence 2333344555555555541 1222234555555555552 3444445555556666666665554 55555555
Q ss_pred CCCCEEeCCCCcCC-ccChhhhcCCCchhHHHHHhhhhhhh
Q 047943 271 SSLELLFLCGNNFS-KFTCKYQSTFTAEKTLLELLQYATVI 310 (479)
Q Consensus 271 ~~L~~L~Ls~n~l~-~lp~~~i~~l~~L~~L~~~L~~n~~~ 310 (479)
++|+.|+|++|.++ .+| ..+..+++|+.| ++++|.+.
T Consensus 523 ~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L--~Ls~N~l~ 560 (968)
T PLN00113 523 KKLVSLDLSHNQLSGQIP-ASFSEMPVLSQL--DLSQNQLS 560 (968)
T ss_pred cCCCEEECCCCcccccCC-hhHhCcccCCEE--ECCCCccc
Confidence 66666666666554 344 555555566666 55555554
No 4
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.90 E-value=2.1e-22 Score=229.34 Aligned_cols=302 Identities=27% Similarity=0.376 Sum_probs=239.7
Q ss_pred ccCCCccCceEEEecCCCC-------CCCCCCC--CCCCceEEECCCCCCcccccccCCCCCCcEEEccCCCCCCCCC-C
Q 047943 10 SLEYLPEELRYLHWYEYPL-------KTLPSNF--EPENLLELNLPYSKIETIWEVKKEAPKLKYINLHNSQYLTGMP-D 79 (479)
Q Consensus 10 ~~~~l~~~Lr~L~~~~~~l-------~~lp~~~--~~~~L~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p-~ 79 (479)
.|+.++ +|++|.+..... -.+|..| -+.+|+.|.+.++.++.+|..+ .+.+|+.|++++|. +..++ .
T Consensus 553 aF~~m~-~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~-l~~L~~~ 629 (1153)
T PLN03210 553 AFKGMR-NLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSK-LEKLWDG 629 (1153)
T ss_pred HHhcCc-cccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCcc-ccccccc
Confidence 466666 799998865432 2467766 3568999999999999999887 57999999999986 55565 5
Q ss_pred CCCCCCCcEEeecCCCCCCCCCccccccCCccccceeeccCCC-ceecCccccCCCCCCEEeccCCC---------CCCC
Q 047943 80 LSETPNLERLNILNCTNLAYIPSCIHNFNNLRSVIGLCLRNTA-IEEVPSSIESLTKLEKLDLSYCT---------RLKG 149 (479)
Q Consensus 80 l~~l~~L~~L~L~~c~~l~~~p~~l~~l~~L~~L~~L~L~~~~-i~~lp~~i~~l~~L~~L~L~~c~---------~L~~ 149 (479)
+..+++|+.|+|++|..+..+|. +..+++|+.|++++|. +.++|.+++++++|+.|++++|. ++++
T Consensus 630 ~~~l~~Lk~L~Ls~~~~l~~ip~----ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~s 705 (1153)
T PLN03210 630 VHSLTGLRNIDLRGSKNLKEIPD----LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKS 705 (1153)
T ss_pred cccCCCCCEEECCCCCCcCcCCc----cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCC
Confidence 88899999999999988888774 4556677789999874 67999999999999999999986 4567
Q ss_pred CCEEecCCCCCCCccchhhhccccCCeeeccCccccccCcccccccCCCCCCC------------------CCCCCCCCC
Q 047943 150 LCKLDLGYCSKFECFPEIIEKMERLRSVDLQSTEVEELPSSMENLEGLKDLPD------------------SLPNLKSLQ 211 (479)
Q Consensus 150 L~~L~L~~c~~l~~~p~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~lp~------------------~l~~l~~L~ 211 (479)
|+.|++++|..++.+|+.. .+|++|++++|.+.++|..+ .+++|..+.. .....++|+
T Consensus 706 L~~L~Lsgc~~L~~~p~~~---~nL~~L~L~~n~i~~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~ 781 (1153)
T PLN03210 706 LYRLNLSGCSRLKSFPDIS---TNISWLDLDETAIEEFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLT 781 (1153)
T ss_pred CCEEeCCCCCCcccccccc---CCcCeeecCCCccccccccc-cccccccccccccchhhccccccccchhhhhccccch
Confidence 8999999999999888753 58999999999999999765 3444443211 112246888
Q ss_pred eeecCCC-------ccccccCCCceeecCCCC-CCCCCcccCCCCCCCEEEcCCCCCcc-CCccCCCCCCCCEEeCCCCc
Q 047943 212 FLNVERL-------FSIADLDKLEDLSISGRR-GLILPPLLSGLSSLTKLVLTCCDVIE-IPQDIGCLSSLELLFLCGNN 282 (479)
Q Consensus 212 ~L~l~~l-------~~l~~l~~L~~L~l~~~~-~~~lp~~~~~l~~L~~L~L~~~~l~~-lp~~l~~l~~L~~L~Ls~n~ 282 (479)
.|+++++ .+++++++|+.|++++|. ...+|... .+++|+.|++++|.... +|.. .++|+.|+|++|.
T Consensus 782 ~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~ 857 (1153)
T PLN03210 782 RLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTG 857 (1153)
T ss_pred heeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECCCCC
Confidence 9998873 356788999999999987 56777755 68999999999986544 6653 4689999999999
Q ss_pred CCccChhhhcCCCchhHHHHHhhhhhhhhccCCccccCCCccccccCCCCc------cccccCCcccc
Q 047943 283 FSKFTCKYQSTFTAEKTLLELLQYATVITRASSSSTLFSCNELQAAPVFAR------ASIMSTRIRRI 344 (479)
Q Consensus 283 l~~lp~~~i~~l~~L~~L~~~L~~n~~~~~~~~~~~l~~C~~L~~lp~lp~------~~~~~~C~~L~ 344 (479)
++.+| ..+..+++|+.| .+.+|++|+.+|..+. .+.+.+|.+|.
T Consensus 858 i~~iP-~si~~l~~L~~L-----------------~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~ 907 (1153)
T PLN03210 858 IEEVP-WWIEKFSNLSFL-----------------DMNGCNNLQRVSLNISKLKHLETVDFSDCGALT 907 (1153)
T ss_pred CccCh-HHHhcCCCCCEE-----------------ECCCCCCcCccCcccccccCCCeeecCCCcccc
Confidence 99999 899999999999 7788888887765332 24678999886
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.88 E-value=2.3e-25 Score=222.14 Aligned_cols=290 Identities=22% Similarity=0.381 Sum_probs=185.9
Q ss_pred ecCCccCCCccCceEEEecCCCCCCCCCCC-CCCCceEEECCCCCCcccccccCCCCCCcEEEccCCCCCCC-CC-CCCC
Q 047943 6 HIDQSLEYLPEELRYLHWYEYPLKTLPSNF-EPENLLELNLPYSKIETIWEVKKEAPKLKYINLHNSQYLTG-MP-DLSE 82 (479)
Q Consensus 6 ~~~~~~~~l~~~Lr~L~~~~~~l~~lp~~~-~~~~L~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~-~p-~l~~ 82 (479)
.||+..+... .+++|.+.+..+..+|... .+.+|+.|.+.+|++..+...+..++.|+.+++.+|+.-.. +| ++-+
T Consensus 23 ~FP~~v~qMt-~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~ 101 (1255)
T KOG0444|consen 23 RFPHDVEQMT-QMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFR 101 (1255)
T ss_pred cCchhHHHhh-heeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhcc
Confidence 4666666666 7888888888888888766 77778888877777665544455555555555444432211 22 3444
Q ss_pred CCCCcEEeecCCCCCCCCCcccccc---------------------CCccccceeeccCCCceecCccccCCCCCCEEec
Q 047943 83 TPNLERLNILNCTNLAYIPSCIHNF---------------------NNLRSVIGLCLRNTAIEEVPSSIESLTKLEKLDL 141 (479)
Q Consensus 83 l~~L~~L~L~~c~~l~~~p~~l~~l---------------------~~L~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L 141 (479)
+..|..|+|++| .+..+|..+..- .+|..|-.|+|++|++..+|+.+..+..|+.|+|
T Consensus 102 l~dLt~lDLShN-qL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~L 180 (1255)
T KOG0444|consen 102 LKDLTILDLSHN-QLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKL 180 (1255)
T ss_pred cccceeeecchh-hhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhc
Confidence 444444444442 233344333322 3334444456666666666666666666666666
Q ss_pred cCCC----------CCCCCCEEecCCCCC-CCccchhhhccccCCeeeccCccccccCcccccccCCCCCCCCCCCCCCC
Q 047943 142 SYCT----------RLKGLCKLDLGYCSK-FECFPEIIEKMERLRSVDLQSTEVEELPSSMENLEGLKDLPDSLPNLKSL 210 (479)
Q Consensus 142 ~~c~----------~L~~L~~L~L~~c~~-l~~~p~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~lp~~l~~l~~L 210 (479)
+++. .+++|++|.+++... +..+|..+..+.+|..++++.|.+..+ |+.+.++++|
T Consensus 181 s~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~v-------------Pecly~l~~L 247 (1255)
T KOG0444|consen 181 SNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIV-------------PECLYKLRNL 247 (1255)
T ss_pred CCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcc-------------hHHHhhhhhh
Confidence 5532 344455555555432 234565666666666666665555544 4455666777
Q ss_pred CeeecCC--C----ccccccCCCceeecCCCCCCCCCcccCCCCCCCEEEcCCCCCc--cCCccCCCCCCCCEEeCCCCc
Q 047943 211 QFLNVER--L----FSIADLDKLEDLSISGRRGLILPPLLSGLSSLTKLVLTCCDVI--EIPQDIGCLSSLELLFLCGNN 282 (479)
Q Consensus 211 ~~L~l~~--l----~~l~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~l~--~lp~~l~~l~~L~~L~Ls~n~ 282 (479)
+.|++++ + ...+...+|++|+++.|....+|+.+..++.|+.|.+.+|.+. ++|+.+|.+..|+.+..++|.
T Consensus 248 rrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~ 327 (1255)
T KOG0444|consen 248 RRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNK 327 (1255)
T ss_pred heeccCcCceeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccc
Confidence 7788777 2 3344567888888888888888888888888888888888765 388888888888888888888
Q ss_pred CCccChhhhcCCCchhHHHHHhhhhhhhhcc
Q 047943 283 FSKFTCKYQSTFTAEKTLLELLQYATVITRA 313 (479)
Q Consensus 283 l~~lp~~~i~~l~~L~~L~~~L~~n~~~~~~ 313 (479)
+.-+| .++.++..|+.| .|+.|++++-.
T Consensus 328 LElVP-EglcRC~kL~kL--~L~~NrLiTLP 355 (1255)
T KOG0444|consen 328 LELVP-EGLCRCVKLQKL--KLDHNRLITLP 355 (1255)
T ss_pred cccCc-hhhhhhHHHHHh--cccccceeech
Confidence 88888 888888888888 88888776643
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.88 E-value=9e-26 Score=214.94 Aligned_cols=310 Identities=23% Similarity=0.271 Sum_probs=230.5
Q ss_pred ecCCccCCCccCceEEEecCCCCCCCCCCC-CCCCceEEECCCCCCcccccccCCCCCCcEEEccCCCCCCCCCCCCCCC
Q 047943 6 HIDQSLEYLPEELRYLHWYEYPLKTLPSNF-EPENLLELNLPYSKIETIWEVKKEAPKLKYINLHNSQYLTGMPDLSETP 84 (479)
Q Consensus 6 ~~~~~~~~l~~~Lr~L~~~~~~l~~lp~~~-~~~~L~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~ 84 (479)
.+|+....++ +++.|+.+.+.++.+|+.+ .+..|..++..+|++..+|+++.++.+|..+++.+|......|+.-+++
T Consensus 105 ~lp~~i~s~~-~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~ 183 (565)
T KOG0472|consen 105 ELPEQIGSLI-SLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMK 183 (565)
T ss_pred hccHHHhhhh-hhhhhhccccceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHH
Confidence 4677777777 7888999999999998877 8889999999999999999999999999999999987655555655588
Q ss_pred CCcEEeecCCCCCCCCCccccccCCccccceeeccCCCceecCccccCCCCCCEEeccC----------CCCCCCCCEEe
Q 047943 85 NLERLNILNCTNLAYIPSCIHNFNNLRSVIGLCLRNTAIEEVPSSIESLTKLEKLDLSY----------CTRLKGLCKLD 154 (479)
Q Consensus 85 ~L~~L~L~~c~~l~~~p~~l~~l~~L~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~----------c~~L~~L~~L~ 154 (479)
.|++|+... +.++.+|+.++.+.++.. |++..|.|..+| +|+.+..|++|.+.. |+++.++..|+
T Consensus 184 ~L~~ld~~~-N~L~tlP~~lg~l~~L~~---LyL~~Nki~~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLD 258 (565)
T KOG0472|consen 184 RLKHLDCNS-NLLETLPPELGGLESLEL---LYLRRNKIRFLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLD 258 (565)
T ss_pred HHHhcccch-hhhhcCChhhcchhhhHH---HHhhhcccccCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeee
Confidence 999999877 467889988887766544 889999888888 788888888887765 56888888889
Q ss_pred cCCCCCCCccchhhhccccCCeeeccCccccccCcccccccCCCC-----------------------------------
Q 047943 155 LGYCSKFECFPEIIEKMERLRSVDLQSTEVEELPSSMENLEGLKD----------------------------------- 199 (479)
Q Consensus 155 L~~c~~l~~~p~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~----------------------------------- 199 (479)
+.. +++.+.|+.+.-+.+|++||+++|.|+.+|.+++++ .|+.
T Consensus 259 LRd-Nklke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dg 336 (565)
T KOG0472|consen 259 LRD-NKLKEVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDG 336 (565)
T ss_pred ccc-cccccCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCC
Confidence 888 567788888888889999999999999999888887 5554
Q ss_pred -------------CC----CCCCCCCCCCeeecCCC--------------------------------------------
Q 047943 200 -------------LP----DSLPNLKSLQFLNVERL-------------------------------------------- 218 (479)
Q Consensus 200 -------------lp----~~l~~l~~L~~L~l~~l-------------------------------------------- 218 (479)
.| .......+.++|++++.
T Consensus 337 lS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~ 416 (565)
T KOG0472|consen 337 LSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTD 416 (565)
T ss_pred CCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHH
Confidence 01 01123344555555440
Q ss_pred ------------ccccccCCCceeecCCCCCCCCCcccCCCCCCCEEEcCCCCCccCCccCCCCCCCCEEeCCCCcCCcc
Q 047943 219 ------------FSIADLDKLEDLSISGRRGLILPPLLSGLSSLTKLVLTCCDVIEIPQDIGCLSSLELLFLCGNNFSKF 286 (479)
Q Consensus 219 ------------~~l~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~l 286 (479)
..+..+++|..|++++|....+|..++.+..|+.|+++.|++..+|..+..+..++.+-.++|.+.++
T Consensus 417 l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~v 496 (565)
T KOG0472|consen 417 LVLSNNKISFVPLELSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSV 496 (565)
T ss_pred HHhhcCccccchHHHHhhhcceeeecccchhhhcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhcccccccc
Confidence 23456789999999999989999999999999999999998888777655555555555555555555
Q ss_pred ChhhhcCCCchhHHHHHhhhhhhhhccCCccccCCCcccccc
Q 047943 287 TCKYQSTFTAEKTLLELLQYATVITRASSSSTLFSCNELQAA 328 (479)
Q Consensus 287 p~~~i~~l~~L~~L~~~L~~n~~~~~~~~~~~l~~C~~L~~l 328 (479)
+.+.+..+.+|..| |+.+|.+.+ ++..+.+|.+|+.+
T Consensus 497 d~~~l~nm~nL~tL--DL~nNdlq~---IPp~LgnmtnL~hL 533 (565)
T KOG0472|consen 497 DPSGLKNMRNLTTL--DLQNNDLQQ---IPPILGNMTNLRHL 533 (565)
T ss_pred ChHHhhhhhhccee--ccCCCchhh---CChhhccccceeEE
Confidence 53335555555555 555555432 23345555555544
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.88 E-value=3.5e-25 Score=220.83 Aligned_cols=287 Identities=22% Similarity=0.300 Sum_probs=214.5
Q ss_pred cCCccCCCccCceEEEecCCCCC--CCCC-CCCCCCceEEECCCCCCcccccccCCCCCCcEEEccCCCCCCCCCC--CC
Q 047943 7 IDQSLEYLPEELRYLHWYEYPLK--TLPS-NFEPENLLELNLPYSKIETIWEVKKEAPKLKYINLHNSQYLTGMPD--LS 81 (479)
Q Consensus 7 ~~~~~~~l~~~Lr~L~~~~~~l~--~lp~-~~~~~~L~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~--l~ 81 (479)
+-+.+..+| .||.+...+++++ .+|. .|+++.|+.|+|++|++++.|.++...+++-+|+||+|+ +..+|. +.
T Consensus 70 vhGELs~Lp-~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~-IetIPn~lfi 147 (1255)
T KOG0444|consen 70 VHGELSDLP-RLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNN-IETIPNSLFI 147 (1255)
T ss_pred hhhhhccch-hhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCc-cccCCchHHH
Confidence 346778888 8999999999985 4565 469999999999999999999999999999999999986 555663 78
Q ss_pred CCCCCcEEeecCCCCCCCCCccccccCCccccceeeccCCCceecC-ccccCCCCCCEEeccCCC-----------CCCC
Q 047943 82 ETPNLERLNILNCTNLAYIPSCIHNFNNLRSVIGLCLRNTAIEEVP-SSIESLTKLEKLDLSYCT-----------RLKG 149 (479)
Q Consensus 82 ~l~~L~~L~L~~c~~l~~~p~~l~~l~~L~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~c~-----------~L~~ 149 (479)
+++.|-.|+|++ +.+..+|+.+..+..|++ |.|++|.+.... ..+..++.|+.|.+++-. .+.+
T Consensus 148 nLtDLLfLDLS~-NrLe~LPPQ~RRL~~Lqt---L~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~N 223 (1255)
T KOG0444|consen 148 NLTDLLFLDLSN-NRLEMLPPQIRRLSMLQT---LKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHN 223 (1255)
T ss_pred hhHhHhhhcccc-chhhhcCHHHHHHhhhhh---hhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhh
Confidence 899999999998 568899999988887776 788888654221 112245667777777632 4556
Q ss_pred CCEEecCCCCCCCccchhhhccccCCeeeccCccccccCcccccccCCCCCCCCCCCCCCCCeeecCC--C----ccccc
Q 047943 150 LCKLDLGYCSKFECFPEIIEKMERLRSVDLQSTEVEELPSSMENLEGLKDLPDSLPNLKSLQFLNVER--L----FSIAD 223 (479)
Q Consensus 150 L~~L~L~~c~~l~~~p~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~lp~~l~~l~~L~~L~l~~--l----~~l~~ 223 (479)
|+.++++. +.+..+|+.+-++.+|+.|+|++|.|+++...++...+ |++|+++. + ..+..
T Consensus 224 L~dvDlS~-N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~-------------lEtLNlSrNQLt~LP~avcK 289 (1255)
T KOG0444|consen 224 LRDVDLSE-NNLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWEN-------------LETLNLSRNQLTVLPDAVCK 289 (1255)
T ss_pred hhhccccc-cCCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhh-------------hhhhccccchhccchHHHhh
Confidence 78888886 56778999999999999999999999997665554443 44445444 1 33445
Q ss_pred cCCCceeecCCCC--CCCCCcccCCCCCCCEEEcCCCCCccCCccCCCCCCCCEEeCCCCcCCccChhhhcCCCchhHHH
Q 047943 224 LDKLEDLSISGRR--GLILPPLLSGLSSLTKLVLTCCDVIEIPQDIGCLSSLELLFLCGNNFSKFTCKYQSTFTAEKTLL 301 (479)
Q Consensus 224 l~~L~~L~l~~~~--~~~lp~~~~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~~i~~l~~L~~L~ 301 (479)
+++|+.|.+.+|. ...+|+.++.+..|+.+..++|.+.-.|+.+..|..|+.|.|+.|++.++| ..|.-++.|+.|
T Consensus 290 L~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~NrLiTLP-eaIHlL~~l~vL- 367 (1255)
T KOG0444|consen 290 LTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNRLITLP-EAIHLLPDLKVL- 367 (1255)
T ss_pred hHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhcccccceeech-hhhhhcCCccee-
Confidence 5666666666665 356777777777777777777766667777777777777777777777777 777777777777
Q ss_pred HHhhhhhhhhccCCc
Q 047943 302 ELLQYATVITRASSS 316 (479)
Q Consensus 302 ~~L~~n~~~~~~~~~ 316 (479)
|++.|..+...+.+
T Consensus 368 -DlreNpnLVMPPKP 381 (1255)
T KOG0444|consen 368 -DLRENPNLVMPPKP 381 (1255)
T ss_pred -eccCCcCccCCCCc
Confidence 77777665544443
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.86 E-value=6.5e-23 Score=203.51 Aligned_cols=292 Identities=24% Similarity=0.291 Sum_probs=171.6
Q ss_pred CccCceEEEecCCCCCCCCCC-C-CCCCceEEECCCCCCcccccccCC------------------------CCCCcEEE
Q 047943 14 LPEELRYLHWYEYPLKTLPSN-F-EPENLLELNLPYSKIETIWEVKKE------------------------APKLKYIN 67 (479)
Q Consensus 14 l~~~Lr~L~~~~~~l~~lp~~-~-~~~~L~~L~L~~s~i~~l~~~~~~------------------------l~~L~~L~ 67 (479)
+|...+.|++++|.+..+... | ++++|++++|.+|.++.+|.+... ++.|+.||
T Consensus 76 lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslD 155 (873)
T KOG4194|consen 76 LPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLD 155 (873)
T ss_pred CccceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhh
Confidence 444555555555555544333 2 555555555555555555554444 44555555
Q ss_pred ccCCCCCCCCC--CCCCCCCCcEEeecCCCCCCCCCccccccCCccccceeeccCCCceecCcc-ccCCCCCCEEeccCC
Q 047943 68 LHNSQYLTGMP--DLSETPNLERLNILNCTNLAYIPSCIHNFNNLRSVIGLCLRNTAIEEVPSS-IESLTKLEKLDLSYC 144 (479)
Q Consensus 68 Ls~~~~l~~~p--~l~~l~~L~~L~L~~c~~l~~~p~~l~~l~~L~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~c 144 (479)
||.|. +.++| .|..-.++++|+|++|.....-...|. .+.+|..|.|+.|+++.+|.- +.++++|+.|+|..+
T Consensus 156 LSrN~-is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~---~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN 231 (873)
T KOG4194|consen 156 LSRNL-ISEIPKPSFPAKVNIKKLNLASNRITTLETGHFD---SLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRN 231 (873)
T ss_pred hhhch-hhcccCCCCCCCCCceEEeecccccccccccccc---ccchheeeecccCcccccCHHHhhhcchhhhhhcccc
Confidence 55542 33333 466667888888888655433333344 444566688999999988864 566999999988763
Q ss_pred ----------CCCCCCCEEecCCCCCCCccchhhhccccCCeeeccCccccccCc-ccccccCCCC-----------CCC
Q 047943 145 ----------TRLKGLCKLDLGYCSKFECFPEIIEKMERLRSVDLQSTEVEELPS-SMENLEGLKD-----------LPD 202 (479)
Q Consensus 145 ----------~~L~~L~~L~L~~c~~l~~~p~~~~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~-----------lp~ 202 (479)
.+|.+|+.|.|..|....--...+-.|.++++|+|..|.+..+-. ++-+++.|+. -+.
T Consensus 232 ~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d 311 (873)
T KOG4194|consen 232 RIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHID 311 (873)
T ss_pred ceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecc
Confidence 245555555555543222112233344455555555555444322 2223333322 123
Q ss_pred CCCCCCCCCeeecCC--C-----ccccccCCCceeecCCCCCCCCCc-ccCCCCCCCEEEcCCCCCcc----CCccCCCC
Q 047943 203 SLPNLKSLQFLNVER--L-----FSIADLDKLEDLSISGRRGLILPP-LLSGLSSLTKLVLTCCDVIE----IPQDIGCL 270 (479)
Q Consensus 203 ~l~~l~~L~~L~l~~--l-----~~l~~l~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~L~~~~l~~----lp~~l~~l 270 (479)
+...+.+|+.|+++. + .++..++.|++|.+++|+...+.+ .+.++++|++|+|++|.+.- -...+..+
T Consensus 312 ~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl 391 (873)
T KOG4194|consen 312 SWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGL 391 (873)
T ss_pred hhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccc
Confidence 444556677777765 1 345556677777777776444333 35567778888887776653 23335567
Q ss_pred CCCCEEeCCCCcCCccChhhhcCCCchhHHHHHhhhhhhhh
Q 047943 271 SSLELLFLCGNNFSKFTCKYQSTFTAEKTLLELLQYATVIT 311 (479)
Q Consensus 271 ~~L~~L~Ls~n~l~~lp~~~i~~l~~L~~L~~~L~~n~~~~ 311 (479)
++|+.|++.||+++.||...+..+..|+.| +|.+|.+.+
T Consensus 392 ~~LrkL~l~gNqlk~I~krAfsgl~~LE~L--dL~~NaiaS 430 (873)
T KOG4194|consen 392 PSLRKLRLTGNQLKSIPKRAFSGLEALEHL--DLGDNAIAS 430 (873)
T ss_pred hhhhheeecCceeeecchhhhccCccccee--cCCCCccee
Confidence 788888888888888887777788888888 887777654
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.83 E-value=7.6e-22 Score=196.00 Aligned_cols=278 Identities=25% Similarity=0.317 Sum_probs=206.9
Q ss_pred CccCCCccCceEEEecCCCCCCCCCC-C-CCCCceEEECCCCCCcccc-cccCCCCCCcEEEccCCCCCCCCC--CCCCC
Q 047943 9 QSLEYLPEELRYLHWYEYPLKTLPSN-F-EPENLLELNLPYSKIETIW-EVKKEAPKLKYINLHNSQYLTGMP--DLSET 83 (479)
Q Consensus 9 ~~~~~l~~~Lr~L~~~~~~l~~lp~~-~-~~~~L~~L~L~~s~i~~l~-~~~~~l~~L~~L~Ls~~~~l~~~p--~l~~l 83 (479)
+.+.++| .||.|+++.|.+..+|.. | .-.++++|+|+.|.|+.+- ..|..+.+|.+|.|+.|+. +.+| .|.++
T Consensus 143 e~L~~l~-alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNri-ttLp~r~Fk~L 220 (873)
T KOG4194|consen 143 EELSALP-ALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRI-TTLPQRSFKRL 220 (873)
T ss_pred HHHHhHh-hhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcc-cccCHHHhhhc
Confidence 4566777 788888888888877754 4 4468888888888888764 3466777888888888764 4444 57778
Q ss_pred CCCcEEeecCCCCCCCCCccccccCCccccceeeccCCCceecCc-cccCCCCCCEEeccCCC----------CCCCCCE
Q 047943 84 PNLERLNILNCTNLAYIPSCIHNFNNLRSVIGLCLRNTAIEEVPS-SIESLTKLEKLDLSYCT----------RLKGLCK 152 (479)
Q Consensus 84 ~~L~~L~L~~c~~l~~~p~~l~~l~~L~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~c~----------~L~~L~~ 152 (479)
++|+.|+|..|..- .+ ....+..|++|+.|.|..|.|..+.. .+..+.++++|+|..+. +|++|+.
T Consensus 221 ~~L~~LdLnrN~ir-iv--e~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~ 297 (873)
T KOG4194|consen 221 PKLESLDLNRNRIR-IV--EGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQ 297 (873)
T ss_pred chhhhhhcccccee-ee--hhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhh
Confidence 88888888875432 11 12233445555668888888887754 46678888888887643 7888888
Q ss_pred EecCCCCCCCccchhhhccccCCeeeccCccccccCcccccccCCCCCCCCCCCCCCCCeeecCC--C-----ccccccC
Q 047943 153 LDLGYCSKFECFPEIIEKMERLRSVDLQSTEVEELPSSMENLEGLKDLPDSLPNLKSLQFLNVER--L-----FSIADLD 225 (479)
Q Consensus 153 L~L~~c~~l~~~p~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~lp~~l~~l~~L~~L~l~~--l-----~~l~~l~ 225 (479)
|++++|..-..-++...-.++|++|+|++|+|.++++. ++..+..|++|.++. + ..+..++
T Consensus 298 L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~------------sf~~L~~Le~LnLs~Nsi~~l~e~af~~ls 365 (873)
T KOG4194|consen 298 LDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEG------------SFRVLSQLEELNLSHNSIDHLAEGAFVGLS 365 (873)
T ss_pred hccchhhhheeecchhhhcccceeEeccccccccCChh------------HHHHHHHhhhhcccccchHHHHhhHHHHhh
Confidence 89888776665567777788899999999988887652 344566778888876 2 4566789
Q ss_pred CCceeecCCCCC----CCCCcccCCCCCCCEEEcCCCCCccCC-ccCCCCCCCCEEeCCCCcCCccChhhhcCCCchhHH
Q 047943 226 KLEDLSISGRRG----LILPPLLSGLSSLTKLVLTCCDVIEIP-QDIGCLSSLELLFLCGNNFSKFTCKYQSTFTAEKTL 300 (479)
Q Consensus 226 ~L~~L~l~~~~~----~~lp~~~~~l~~L~~L~L~~~~l~~lp-~~l~~l~~L~~L~Ls~n~l~~lp~~~i~~l~~L~~L 300 (479)
+|++|+++.|.. ..-...+.++++|+.|.+.||++..+| ..+..+++|+.|||.+|.+.+|....+..+ .|+.|
T Consensus 366 sL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~L 444 (873)
T KOG4194|consen 366 SLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKEL 444 (873)
T ss_pred hhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhh
Confidence 999999999873 333344778999999999999999976 467889999999999999998876778887 89988
Q ss_pred HHHhhh
Q 047943 301 LELLQY 306 (479)
Q Consensus 301 ~~~L~~ 306 (479)
.++.
T Consensus 445 --v~nS 448 (873)
T KOG4194|consen 445 --VMNS 448 (873)
T ss_pred --hhcc
Confidence 5544
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.82 E-value=4.1e-23 Score=196.89 Aligned_cols=248 Identities=25% Similarity=0.309 Sum_probs=116.4
Q ss_pred EEEecCCCCCCCCCCC-CCCCceEEECCCCCCcccccccCCCCCCcEEEccCCCCCCCCCCCCCCCCCcEEeecCCCCCC
Q 047943 20 YLHWYEYPLKTLPSNF-EPENLLELNLPYSKIETIWEVKKEAPKLKYINLHNSQYLTGMPDLSETPNLERLNILNCTNLA 98 (479)
Q Consensus 20 ~L~~~~~~l~~lp~~~-~~~~L~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c~~l~ 98 (479)
.+.+..+.++.+..+. ++.-|++|++.++++.++|..++.+..++.+++++++...-.+.+..+++|.+|+.+.+ .+.
T Consensus 49 ~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n-~~~ 127 (565)
T KOG0472|consen 49 KLILSHNDLEVLREDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSN-ELK 127 (565)
T ss_pred hhhhccCchhhccHhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhcccc-cee
Confidence 3344444444443333 44455555555555555555555555555555555433222224445555555555442 233
Q ss_pred CCCccccccCCccccceeeccCCCceecCccccCCCCCCEEeccCCC---------CCCCCCEEecCCCCCCCccchhhh
Q 047943 99 YIPSCIHNFNNLRSVIGLCLRNTAIEEVPSSIESLTKLEKLDLSYCT---------RLKGLCKLDLGYCSKFECFPEIIE 169 (479)
Q Consensus 99 ~~p~~l~~l~~L~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~---------~L~~L~~L~L~~c~~l~~~p~~~~ 169 (479)
.+|++++.+..+.. ++-.+|++..+|..++++.+|..+++.++. +.+.|++|+... +.++.+|+.++
T Consensus 128 el~~~i~~~~~l~d---l~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~-N~L~tlP~~lg 203 (565)
T KOG0472|consen 128 ELPDSIGRLLDLED---LDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNS-NLLETLPPELG 203 (565)
T ss_pred ecCchHHHHhhhhh---hhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccch-hhhhcCChhhc
Confidence 44444444433322 444445555555555555554444444411 111222222221 44566677777
Q ss_pred ccccCCeeeccCccccccCcccccccCCCCCCCCCCCCCCCCeeecCC-----C--ccccccCCCceeecCCCCCCCCCc
Q 047943 170 KMERLRSVDLQSTEVEELPSSMENLEGLKDLPDSLPNLKSLQFLNVER-----L--FSIADLDKLEDLSISGRRGLILPP 242 (479)
Q Consensus 170 ~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~lp~~l~~l~~L~~L~l~~-----l--~~l~~l~~L~~L~l~~~~~~~lp~ 242 (479)
.|.+|+.|++..|.|..+| .|+. |..|+++.++. + ....+++++..||+++|+...+|+
T Consensus 204 ~l~~L~~LyL~~Nki~~lP-ef~g-------------cs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pd 269 (565)
T KOG0472|consen 204 GLESLELLYLRRNKIRFLP-EFPG-------------CSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPD 269 (565)
T ss_pred chhhhHHHHhhhcccccCC-CCCc-------------cHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCch
Confidence 7777777777777766666 3333 22333333332 0 111234444444555555555555
Q ss_pred ccCCCCCCCEEEcCCCCCccCCccCCCCCCCCEEeCCCCcCCccC
Q 047943 243 LLSGLSSLTKLVLTCCDVIEIPQDIGCLSSLELLFLCGNNFSKFT 287 (479)
Q Consensus 243 ~~~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp 287 (479)
.+.-+.+|..||+++|.++.+|..++++ .|+.|-+.||.+.+|-
T Consensus 270 e~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiR 313 (565)
T KOG0472|consen 270 EICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTIR 313 (565)
T ss_pred HHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchHHHH
Confidence 4444445555555555555555555555 5555555555544443
No 11
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.76 E-value=7.9e-18 Score=180.14 Aligned_cols=250 Identities=22% Similarity=0.301 Sum_probs=175.7
Q ss_pred ccCceEEEecCCCCCCCCCCCCCCCceEEECCCCCCcccccccCCCCCCcEEEccCCCCCCCCCCCCCCCCCcEEeecCC
Q 047943 15 PEELRYLHWYEYPLKTLPSNFEPENLLELNLPYSKIETIWEVKKEAPKLKYINLHNSQYLTGMPDLSETPNLERLNILNC 94 (479)
Q Consensus 15 ~~~Lr~L~~~~~~l~~lp~~~~~~~L~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c 94 (479)
.+.-..|+++++.++++|..+. .+|+.|++.+|+++.+|.. +++|+.|++++| .++.+|.+ .++|+.|++.+|
T Consensus 200 ~~~~~~LdLs~~~LtsLP~~l~-~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N-~LtsLP~l--p~sL~~L~Ls~N 272 (788)
T PRK15387 200 NNGNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLTSLPAL---PPELRTLEVSGN-QLTSLPVL--PPGLLELSIFSN 272 (788)
T ss_pred cCCCcEEEcCCCCCCcCCcchh-cCCCEEEccCCcCCCCCCC---CCCCcEEEecCC-ccCcccCc--ccccceeeccCC
Confidence 3456678888888888888663 4788999999988888753 578899999887 45566643 468888888886
Q ss_pred CCCCCCCccccccCCccccceeeccCCCceecCccccCCCCCCEEeccCCC--C----CCCCCEEecCCCCCCCccchhh
Q 047943 95 TNLAYIPSCIHNFNNLRSVIGLCLRNTAIEEVPSSIESLTKLEKLDLSYCT--R----LKGLCKLDLGYCSKFECFPEII 168 (479)
Q Consensus 95 ~~l~~~p~~l~~l~~L~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~--~----L~~L~~L~L~~c~~l~~~p~~~ 168 (479)
. +..+|... ..|+.|++++|.+..+|.. .++|+.|+++++. . ..+|+.|++++|.. ..+|...
T Consensus 273 ~-L~~Lp~lp------~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~L~~Lp~lp~~L~~L~Ls~N~L-~~LP~lp 341 (788)
T PRK15387 273 P-LTHLPALP------SGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPALPSELCKLWAYNNQL-TSLPTLP 341 (788)
T ss_pred c-hhhhhhch------hhcCEEECcCCcccccccc---ccccceeECCCCccccCCCCcccccccccccCcc-ccccccc
Confidence 4 44555432 3456688888888888753 4678888888762 1 12467778877554 4466432
Q ss_pred hccccCCeeeccCccccccCcccccccCCCCCCCCCCCCCCCCeeecCC--Cccccc-cCCCceeecCCCCCCCCCcccC
Q 047943 169 EKMERLRSVDLQSTEVEELPSSMENLEGLKDLPDSLPNLKSLQFLNVER--LFSIAD-LDKLEDLSISGRRGLILPPLLS 245 (479)
Q Consensus 169 ~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~lp~~l~~l~~L~~L~l~~--l~~l~~-l~~L~~L~l~~~~~~~lp~~~~ 245 (479)
.+|+.|++++|.++++|....+ |+.|++++ +..+.. ..+|+.|++++|....+|..
T Consensus 342 ---~~Lq~LdLS~N~Ls~LP~lp~~----------------L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N~Lt~LP~l-- 400 (788)
T PRK15387 342 ---SGLQELSVSDNQLASLPTLPSE----------------LYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLPVL-- 400 (788)
T ss_pred ---cccceEecCCCccCCCCCCCcc----------------cceehhhccccccCcccccccceEEecCCcccCCCCc--
Confidence 3788999999988887753322 22333332 111111 24688888888887777763
Q ss_pred CCCCCCEEEcCCCCCccCCccCCCCCCCCEEeCCCCcCCccChhhhcCCCchhHHHHHhhhhhhh
Q 047943 246 GLSSLTKLVLTCCDVIEIPQDIGCLSSLELLFLCGNNFSKFTCKYQSTFTAEKTLLELLQYATVI 310 (479)
Q Consensus 246 ~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~~i~~l~~L~~L~~~L~~n~~~ 310 (479)
.++|+.|++++|.+..+|.. ..+|+.|++++|.++.+| ..+..+++|+.| +|++|++.
T Consensus 401 -~s~L~~LdLS~N~LssIP~l---~~~L~~L~Ls~NqLt~LP-~sl~~L~~L~~L--dLs~N~Ls 458 (788)
T PRK15387 401 -PSELKELMVSGNRLTSLPML---PSGLLSLSVYRNQLTRLP-ESLIHLSSETTV--NLEGNPLS 458 (788)
T ss_pred -ccCCCEEEccCCcCCCCCcc---hhhhhhhhhccCcccccC-hHHhhccCCCeE--ECCCCCCC
Confidence 35788888888888887763 346788888888888888 788888888888 88888764
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.72 E-value=1.3e-19 Score=188.83 Aligned_cols=285 Identities=24% Similarity=0.339 Sum_probs=175.7
Q ss_pred CceEEEecCCCCCCCCCCC-CCCCceEEECCCCCCcccccccCCCCCCcEEEccCCCCCCCCC-CCCCCCCCcEEeecCC
Q 047943 17 ELRYLHWYEYPLKTLPSNF-EPENLLELNLPYSKIETIWEVKKEAPKLKYINLHNSQYLTGMP-DLSETPNLERLNILNC 94 (479)
Q Consensus 17 ~Lr~L~~~~~~l~~lp~~~-~~~~L~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p-~l~~l~~L~~L~L~~c 94 (479)
+|+.|+++.+.+..+|... .+.+|+.|+++.|.|..+|....++.+|+.++|.++. +..+| .++.+.+|++|++++|
T Consensus 46 ~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~-l~~lP~~~~~lknl~~LdlS~N 124 (1081)
T KOG0618|consen 46 KLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNR-LQSLPASISELKNLQYLDLSFN 124 (1081)
T ss_pred eeEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccch-hhcCchhHHhhhcccccccchh
Confidence 3666666666666666655 5666666666666666666666666666666666653 33444 4666666666666664
Q ss_pred CCCCCCCccccccCCccc----------------cce----------------------eeccCCCceecCccccCCCCC
Q 047943 95 TNLAYIPSCIHNFNNLRS----------------VIG----------------------LCLRNTAIEEVPSSIESLTKL 136 (479)
Q Consensus 95 ~~l~~~p~~l~~l~~L~~----------------L~~----------------------L~L~~~~i~~lp~~i~~l~~L 136 (479)
. ...+|..+..+..... ++. |+|++|.+..+ ....+.+|
T Consensus 125 ~-f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N~~~~~--dls~~~~l 201 (1081)
T KOG0618|consen 125 H-FGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTHQLDLRYNEMEVL--DLSNLANL 201 (1081)
T ss_pred c-cCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhheeeecccchhhhh--hhhhccch
Confidence 3 2333333221111100 122 45555544311 11222222
Q ss_pred CEEecc--------------------CCC--------CCCCCCEEecCCCCCCCccchhhhccccCCeeeccCccccccC
Q 047943 137 EKLDLS--------------------YCT--------RLKGLCKLDLGYCSKFECFPEIIEKMERLRSVDLQSTEVEELP 188 (479)
Q Consensus 137 ~~L~L~--------------------~c~--------~L~~L~~L~L~~c~~l~~~p~~~~~l~~L~~L~L~~~~i~~lp 188 (479)
+.|... .|. .-.+|++++++. +.+..+|++++.+.+|+.+....|.+..+|
T Consensus 202 ~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~-n~l~~lp~wi~~~~nle~l~~n~N~l~~lp 280 (1081)
T KOG0618|consen 202 EVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISH-NNLSNLPEWIGACANLEALNANHNRLVALP 280 (1081)
T ss_pred hhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecch-hhhhcchHHHHhcccceEecccchhHHhhH
Confidence 222211 111 112346666666 445567788888888888888888888888
Q ss_pred cccccccCCCC----------CCCCCCCCCCCCeeecCC--Cc----------------------------cc--cccCC
Q 047943 189 SSMENLEGLKD----------LPDSLPNLKSLQFLNVER--LF----------------------------SI--ADLDK 226 (479)
Q Consensus 189 ~~i~~l~~L~~----------lp~~l~~l~~L~~L~l~~--l~----------------------------~l--~~l~~ 226 (479)
..+...++|+. +|....++++|++|++.. +. .. ..++.
T Consensus 281 ~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~ 360 (1081)
T KOG0618|consen 281 LRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAA 360 (1081)
T ss_pred HHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHH
Confidence 77666655543 788888899999998866 10 01 12345
Q ss_pred CceeecCCCC--CCCCCcccCCCCCCCEEEcCCCCCccCCcc-CCCCCCCCEEeCCCCcCCccChhhhcCCCchhHHHHH
Q 047943 227 LEDLSISGRR--GLILPPLLSGLSSLTKLVLTCCDVIEIPQD-IGCLSSLELLFLCGNNFSKFTCKYQSTFTAEKTLLEL 303 (479)
Q Consensus 227 L~~L~l~~~~--~~~lp~~~~~l~~L~~L~L~~~~l~~lp~~-l~~l~~L~~L~Ls~n~l~~lp~~~i~~l~~L~~L~~~ 303 (479)
|+.|.+.+|. ...+|. +.+++.|+.|+|++|.+.++|.. +..+..|+.|+||||+++.|| ..+..+..|++| .
T Consensus 361 Lq~LylanN~Ltd~c~p~-l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp-~tva~~~~L~tL--~ 436 (1081)
T KOG0618|consen 361 LQELYLANNHLTDSCFPV-LVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLP-DTVANLGRLHTL--R 436 (1081)
T ss_pred HHHHHHhcCcccccchhh-hccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhh-HHHHhhhhhHHH--h
Confidence 6666777776 344454 66778888888888888887754 567788888888888888888 888888888888 7
Q ss_pred hhhhhhh
Q 047943 304 LQYATVI 310 (479)
Q Consensus 304 L~~n~~~ 310 (479)
..+|.+.
T Consensus 437 ahsN~l~ 443 (1081)
T KOG0618|consen 437 AHSNQLL 443 (1081)
T ss_pred hcCCcee
Confidence 7777654
No 13
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.69 E-value=2.7e-16 Score=168.45 Aligned_cols=232 Identities=25% Similarity=0.312 Sum_probs=178.9
Q ss_pred CccCceEEEecCCCCCCCCCCCCCCCceEEECCCCCCcccccccCCCCCCcEEEccCCCCCCCCCCCCCCCCCcEEeecC
Q 047943 14 LPEELRYLHWYEYPLKTLPSNFEPENLLELNLPYSKIETIWEVKKEAPKLKYINLHNSQYLTGMPDLSETPNLERLNILN 93 (479)
Q Consensus 14 l~~~Lr~L~~~~~~l~~lp~~~~~~~L~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~ 93 (479)
++.+|+.|.+.+|.++.+|.. +++|++|+|++|+++.+|.. .++|+.|++++|. +..+|.+ ..+|+.|++++
T Consensus 220 l~~~L~~L~L~~N~Lt~LP~l--p~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~-L~~Lp~l--p~~L~~L~Ls~ 291 (788)
T PRK15387 220 LPAHITTLVIPDNNLTSLPAL--PPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNP-LTHLPAL--PSGLCKLWIFG 291 (788)
T ss_pred hhcCCCEEEccCCcCCCCCCC--CCCCcEEEecCCccCcccCc---ccccceeeccCCc-hhhhhhc--hhhcCEEECcC
Confidence 455899999999999999974 68999999999999998853 5789999999985 5566642 36788999999
Q ss_pred CCCCCCCCccccccCCccccceeeccCCCceecCccccCCCCCCEEeccCCC--CC----CCCCEEecCCCCCCCccchh
Q 047943 94 CTNLAYIPSCIHNFNNLRSVIGLCLRNTAIEEVPSSIESLTKLEKLDLSYCT--RL----KGLCKLDLGYCSKFECFPEI 167 (479)
Q Consensus 94 c~~l~~~p~~l~~l~~L~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~--~L----~~L~~L~L~~c~~l~~~p~~ 167 (479)
|. +..+|.. ++.|+.|++++|.+..+|... .+|+.|++++|. .+ .+|+.|++++|. +..+|..
T Consensus 292 N~-Lt~LP~~------p~~L~~LdLS~N~L~~Lp~lp---~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~-Ls~LP~l 360 (788)
T PRK15387 292 NQ-LTSLPVL------PPGLQELSVSDNQLASLPALP---SELCKLWAYNNQLTSLPTLPSGLQELSVSDNQ-LASLPTL 360 (788)
T ss_pred Cc-ccccccc------ccccceeECCCCccccCCCCc---ccccccccccCccccccccccccceEecCCCc-cCCCCCC
Confidence 64 5566653 345778999999998887633 356777777753 12 368999999865 4456754
Q ss_pred hhccccCCeeeccCccccccCcccccccCCCCCCCCCCCCCCCCeeecCC--Ccccc-ccCCCceeecCCCCCCCCCccc
Q 047943 168 IEKMERLRSVDLQSTEVEELPSSMENLEGLKDLPDSLPNLKSLQFLNVER--LFSIA-DLDKLEDLSISGRRGLILPPLL 244 (479)
Q Consensus 168 ~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~lp~~l~~l~~L~~L~l~~--l~~l~-~l~~L~~L~l~~~~~~~lp~~~ 244 (479)
. .+|+.|++++|.+..+|... .+|+.|++++ +..+. ..++|+.|++++|....+|..
T Consensus 361 p---~~L~~L~Ls~N~L~~LP~l~----------------~~L~~LdLs~N~Lt~LP~l~s~L~~LdLS~N~LssIP~l- 420 (788)
T PRK15387 361 P---SELYKLWAYNNRLTSLPALP----------------SGLKELIVSGNRLTSLPVLPSELKELMVSGNRLTSLPML- 420 (788)
T ss_pred C---cccceehhhccccccCcccc----------------cccceEEecCCcccCCCCcccCCCEEEccCCcCCCCCcc-
Confidence 3 47888999999988877421 3467777776 33222 236899999999998888864
Q ss_pred CCCCCCCEEEcCCCCCccCCccCCCCCCCCEEeCCCCcCCcc
Q 047943 245 SGLSSLTKLVLTCCDVIEIPQDIGCLSSLELLFLCGNNFSKF 286 (479)
Q Consensus 245 ~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~l 286 (479)
+.+|+.|++++|+++.+|..+..+++|+.|+|++|+++..
T Consensus 421 --~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~Ls~~ 460 (788)
T PRK15387 421 --PSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSER 460 (788)
T ss_pred --hhhhhhhhhccCcccccChHHhhccCCCeEECCCCCCCch
Confidence 3578999999999999999999999999999999998843
No 14
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.68 E-value=5.4e-17 Score=174.60 Aligned_cols=146 Identities=19% Similarity=0.323 Sum_probs=106.3
Q ss_pred CCccCceEEEecCCCCCCCCCCCCCCCceEEECCCCCCcccccccCCCCCCcEEEccCCCCCCCCCC-CCCCCCCcEEee
Q 047943 13 YLPEELRYLHWYEYPLKTLPSNFEPENLLELNLPYSKIETIWEVKKEAPKLKYINLHNSQYLTGMPD-LSETPNLERLNI 91 (479)
Q Consensus 13 ~l~~~Lr~L~~~~~~l~~lp~~~~~~~L~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L 91 (479)
.+.++...|++++..++++|... +++|+.|+|++|+++.+|..+. .+|+.|++++|. ++.+|. + ..+|+.|+|
T Consensus 175 Cl~~~~~~L~L~~~~LtsLP~~I-p~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~-LtsLP~~l--~~~L~~L~L 248 (754)
T PRK15370 175 CLKNNKTELRLKILGLTTIPACI-PEQITTLILDNNELKSLPENLQ--GNIKTLYANSNQ-LTSIPATL--PDTIQEMEL 248 (754)
T ss_pred hcccCceEEEeCCCCcCcCCccc-ccCCcEEEecCCCCCcCChhhc--cCCCEEECCCCc-cccCChhh--hccccEEEC
Confidence 34456788999999999999765 5689999999999999987654 699999999875 566764 3 357999999
Q ss_pred cCCCCCCCCCccccccCCccccceeeccCCCceecCccccCCCCCCEEeccCCCCCCCCCEEecCCCCCCCccchhhhcc
Q 047943 92 LNCTNLAYIPSCIHNFNNLRSVIGLCLRNTAIEEVPSSIESLTKLEKLDLSYCTRLKGLCKLDLGYCSKFECFPEIIEKM 171 (479)
Q Consensus 92 ~~c~~l~~~p~~l~~l~~L~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~L~~L~~L~L~~c~~l~~~p~~~~~l 171 (479)
++|. +..+|..+. ..|+.|++++|.+..+|..+. ++|+.|++++| .+..+|..+.
T Consensus 249 s~N~-L~~LP~~l~-----s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N---------------~Lt~LP~~lp-- 303 (754)
T PRK15370 249 SINR-ITELPERLP-----SALQSLDLFHNKISCLPENLP--EELRYLSVYDN---------------SIRTLPAHLP-- 303 (754)
T ss_pred cCCc-cCcCChhHh-----CCCCEEECcCCccCccccccC--CCCcEEECCCC---------------ccccCcccch--
Confidence 9975 457777653 357789999999988887553 35666666653 2333443322
Q ss_pred ccCCeeeccCccccccCc
Q 047943 172 ERLRSVDLQSTEVEELPS 189 (479)
Q Consensus 172 ~~L~~L~L~~~~i~~lp~ 189 (479)
.+|+.|++++|.+..+|.
T Consensus 304 ~sL~~L~Ls~N~Lt~LP~ 321 (754)
T PRK15370 304 SGITHLNVQSNSLTALPE 321 (754)
T ss_pred hhHHHHHhcCCccccCCc
Confidence 367788888887776664
No 15
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.68 E-value=4.8e-16 Score=167.33 Aligned_cols=217 Identities=22% Similarity=0.343 Sum_probs=116.5
Q ss_pred CceEEECCCCCCcccccccCCCCCCcEEEccCCCCCCCCCC-CCCCCCCcEEeecCCCCCCCCCccccccCCccccceee
Q 047943 39 NLLELNLPYSKIETIWEVKKEAPKLKYINLHNSQYLTGMPD-LSETPNLERLNILNCTNLAYIPSCIHNFNNLRSVIGLC 117 (479)
Q Consensus 39 ~L~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c~~l~~~p~~l~~l~~L~~L~~L~ 117 (479)
+...|++.+.+++.+|..+ .++|+.|+|++|. ++.+|. +. .+|++|++++|. +..+|..+. .+|+.|+
T Consensus 179 ~~~~L~L~~~~LtsLP~~I--p~~L~~L~Ls~N~-LtsLP~~l~--~nL~~L~Ls~N~-LtsLP~~l~-----~~L~~L~ 247 (754)
T PRK15370 179 NKTELRLKILGLTTIPACI--PEQITTLILDNNE-LKSLPENLQ--GNIKTLYANSNQ-LTSIPATLP-----DTIQEME 247 (754)
T ss_pred CceEEEeCCCCcCcCCccc--ccCCcEEEecCCC-CCcCChhhc--cCCCEEECCCCc-cccCChhhh-----ccccEEE
Confidence 4566666666666666544 2466677776663 444552 22 467777776653 445554432 2455667
Q ss_pred ccCCCceecCccccCCCCCCEEeccCCCCCCCCCEEecCCCCCCCccchhhhccccCCeeeccCccccccCcccccccCC
Q 047943 118 LRNTAIEEVPSSIESLTKLEKLDLSYCTRLKGLCKLDLGYCSKFECFPEIIEKMERLRSVDLQSTEVEELPSSMENLEGL 197 (479)
Q Consensus 118 L~~~~i~~lp~~i~~l~~L~~L~L~~c~~L~~L~~L~L~~c~~l~~~p~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L 197 (479)
+++|.+.++|..+. .+|+.|++++ +.+..+|..+. .+|+.|++++|.++.+|..+.
T Consensus 248 Ls~N~L~~LP~~l~--s~L~~L~Ls~---------------N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp----- 303 (754)
T PRK15370 248 LSINRITELPERLP--SALQSLDLFH---------------NKISCLPENLP--EELRYLSVYDNSIRTLPAHLP----- 303 (754)
T ss_pred CcCCccCcCChhHh--CCCCEEECcC---------------CccCccccccC--CCCcEEECCCCccccCcccch-----
Confidence 77776666665442 2344444332 22333444332 356677777766666554221
Q ss_pred CCCCCCCCCCCCCCeeecCC--Ccccc--ccCCCceeecCCCCCCCCCcccCCCCCCCEEEcCCCCCccCCccCCCCCCC
Q 047943 198 KDLPDSLPNLKSLQFLNVER--LFSIA--DLDKLEDLSISGRRGLILPPLLSGLSSLTKLVLTCCDVIEIPQDIGCLSSL 273 (479)
Q Consensus 198 ~~lp~~l~~l~~L~~L~l~~--l~~l~--~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~lp~~l~~l~~L 273 (479)
.+|+.|++++ +..+. ..++|+.|++++|....+|..+. ++|+.|++++|++..+|..+ .++|
T Consensus 304 ----------~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~L~~LP~~l--p~~L 369 (754)
T PRK15370 304 ----------SGITHLNVQSNSLTALPETLPPGLKTLEAGENALTSLPASLP--PELQVLDVSKNQITVLPETL--PPTI 369 (754)
T ss_pred ----------hhHHHHHhcCCccccCCccccccceeccccCCccccCChhhc--CcccEEECCCCCCCcCChhh--cCCc
Confidence 1233333333 11111 12456666666666555555432 56777777777666666544 2467
Q ss_pred CEEeCCCCcCCccChhhhcCCCchhHHHHHhhhhhh
Q 047943 274 ELLFLCGNNFSKFTCKYQSTFTAEKTLLELLQYATV 309 (479)
Q Consensus 274 ~~L~Ls~n~l~~lp~~~i~~l~~L~~L~~~L~~n~~ 309 (479)
+.|+|++|.++.+| ..+. ..|+.| ++++|++
T Consensus 370 ~~LdLs~N~Lt~LP-~~l~--~sL~~L--dLs~N~L 400 (754)
T PRK15370 370 TTLDVSRNALTNLP-ENLP--AALQIM--QASRNNL 400 (754)
T ss_pred CEEECCCCcCCCCC-HhHH--HHHHHH--hhccCCc
Confidence 77777777766666 4443 256666 5555543
No 16
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.67 E-value=1.1e-18 Score=182.19 Aligned_cols=300 Identities=23% Similarity=0.275 Sum_probs=202.2
Q ss_pred CceEEEecCCCCCCCCCCC--CCCCceEEECCCCCCcccccccCCCCCCcEEEccCCCCCCCCC-CCCCCCCCcEEeecC
Q 047943 17 ELRYLHWYEYPLKTLPSNF--EPENLLELNLPYSKIETIWEVKKEAPKLKYINLHNSQYLTGMP-DLSETPNLERLNILN 93 (479)
Q Consensus 17 ~Lr~L~~~~~~l~~lp~~~--~~~~L~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p-~l~~l~~L~~L~L~~ 93 (479)
.+..|++..+-+-+.|-.| ..-+|..|+|+.+.+...|..+..+.+|+.|+++.|. +...| ..+++.+|++|+|.+
T Consensus 22 ~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~-i~~vp~s~~~~~~l~~lnL~~ 100 (1081)
T KOG0618|consen 22 ALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNY-IRSVPSSCSNMRNLQYLNLKN 100 (1081)
T ss_pred HHHhhhccccccccCchHHhhheeeeEEeeccccccccCCchhhhHHHHhhcccchhh-HhhCchhhhhhhcchhheecc
Confidence 4777888888887777555 4556999999999999999999999999999999974 55666 689999999999987
Q ss_pred CCCCCCCCccccccCCccccceeeccCCCceecCccccCCCCCCEEeccCCCCC--------------------------
Q 047943 94 CTNLAYIPSCIHNFNNLRSVIGLCLRNTAIEEVPSSIESLTKLEKLDLSYCTRL-------------------------- 147 (479)
Q Consensus 94 c~~l~~~p~~l~~l~~L~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~L-------------------------- 147 (479)
+.+...|.++..+++++. |++++|.+..+|..+..+..+..++.+++...
T Consensus 101 -n~l~~lP~~~~~lknl~~---LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i 176 (1081)
T KOG0618|consen 101 -NRLQSLPASISELKNLQY---LDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDI 176 (1081)
T ss_pred -chhhcCchhHHhhhcccc---cccchhccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcch
Confidence 677888988887777655 89999998888877665555555444443100
Q ss_pred CCCCE-EecCCCCCC----------Cccchh-----------------------------hhccccCCeeeccCcccccc
Q 047943 148 KGLCK-LDLGYCSKF----------ECFPEI-----------------------------IEKMERLRSVDLQSTEVEEL 187 (479)
Q Consensus 148 ~~L~~-L~L~~c~~l----------~~~p~~-----------------------------~~~l~~L~~L~L~~~~i~~l 187 (479)
..+++ |+|.+|... +.+-.. -..-.+|++++++.+.+..+
T Consensus 177 ~~l~~~ldLr~N~~~~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~l 256 (1081)
T KOG0618|consen 177 YNLTHQLDLRYNEMEVLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNL 256 (1081)
T ss_pred hhhheeeecccchhhhhhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhhcc
Confidence 01122 333332222 111000 00112455555555555556
Q ss_pred CcccccccCCCC----------CCCCCCCCCCCCeeecCC-----C-ccccccCCCceeecCCCCCCCCCccc-------
Q 047943 188 PSSMENLEGLKD----------LPDSLPNLKSLQFLNVER-----L-FSIADLDKLEDLSISGRRGLILPPLL------- 244 (479)
Q Consensus 188 p~~i~~l~~L~~----------lp~~l~~l~~L~~L~l~~-----l-~~l~~l~~L~~L~l~~~~~~~lp~~~------- 244 (479)
|.+++.|.+|+. +|..+....+|+.|.+.. + +...++++|++|++..|....+|+.+
T Consensus 257 p~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~ 336 (1081)
T KOG0618|consen 257 PEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNAS 336 (1081)
T ss_pred hHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHH
Confidence 655555555544 333444444555444433 1 44556788888888888765555421
Q ss_pred -------------------CCCCCCCEEEcCCCCCcc-CCccCCCCCCCCEEeCCCCcCCccChhhhcCCCchhHHHHHh
Q 047943 245 -------------------SGLSSLTKLVLTCCDVIE-IPQDIGCLSSLELLFLCGNNFSKFTCKYQSTFTAEKTLLELL 304 (479)
Q Consensus 245 -------------------~~l~~L~~L~L~~~~l~~-lp~~l~~l~~L~~L~Ls~n~l~~lp~~~i~~l~~L~~L~~~L 304 (479)
..++.|+.|.+.+|.+++ .-..+.++.+|+.|+|++|++.++|...+.++..|+.| +|
T Consensus 337 l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL--~L 414 (1081)
T KOG0618|consen 337 LNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEEL--NL 414 (1081)
T ss_pred HHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHH--hc
Confidence 113457777788888887 44457788999999999999999997788999999999 99
Q ss_pred hhhhhhhccCCccccCCCcccc
Q 047943 305 QYATVITRASSSSTLFSCNELQ 326 (479)
Q Consensus 305 ~~n~~~~~~~~~~~l~~C~~L~ 326 (479)
++|++.+-. ..+..|+.|+
T Consensus 415 SGNkL~~Lp---~tva~~~~L~ 433 (1081)
T KOG0618|consen 415 SGNKLTTLP---DTVANLGRLH 433 (1081)
T ss_pred ccchhhhhh---HHHHhhhhhH
Confidence 999986432 2344454443
No 17
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.54 E-value=2.5e-16 Score=150.65 Aligned_cols=133 Identities=20% Similarity=0.272 Sum_probs=101.1
Q ss_pred cCCccCCCccCceEEEecCCCCCCCCCC-C-CCCCceEEECCCCCCccc-ccccCCCCCCcEEEccCCCCCCCCC--CCC
Q 047943 7 IDQSLEYLPEELRYLHWYEYPLKTLPSN-F-EPENLLELNLPYSKIETI-WEVKKEAPKLKYINLHNSQYLTGMP--DLS 81 (479)
Q Consensus 7 ~~~~~~~l~~~Lr~L~~~~~~l~~lp~~-~-~~~~L~~L~L~~s~i~~l-~~~~~~l~~L~~L~Ls~~~~l~~~p--~l~ 81 (479)
+-+.+..+|.+...+.++.|.++++|+. | .+++|+.|+|++|+|+.| |..|+.+..|..|-+.++..++++| .|.
T Consensus 58 L~eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~ 137 (498)
T KOG4237|consen 58 LTEVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFG 137 (498)
T ss_pred cccCcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhh
Confidence 3455667888889999999999999885 5 899999999999999987 6888999999999998888889998 388
Q ss_pred CCCCCcEEeecCCCCCCCCCccccccCCccccceeeccCCCceecCc-cccCCCCCCEEecc
Q 047943 82 ETPNLERLNILNCTNLAYIPSCIHNFNNLRSVIGLCLRNTAIEEVPS-SIESLTKLEKLDLS 142 (479)
Q Consensus 82 ~l~~L~~L~L~~c~~l~~~p~~l~~l~~L~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~ 142 (479)
++..|+.|.+.-|...-.....+. .|+.|..|.+.+|.+..++. ++..+..++.+.+.
T Consensus 138 gL~slqrLllNan~i~Cir~~al~---dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA 196 (498)
T KOG4237|consen 138 GLSSLQRLLLNANHINCIRQDALR---DLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLA 196 (498)
T ss_pred hHHHHHHHhcChhhhcchhHHHHH---HhhhcchhcccchhhhhhccccccchhccchHhhh
Confidence 898898888876544332333333 34445557778887777765 56666666666554
No 18
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.53 E-value=4.8e-16 Score=132.93 Aligned_cols=161 Identities=26% Similarity=0.385 Sum_probs=137.1
Q ss_pred CceEEEecCCCCCCCCCCC-CCCCceEEECCCCCCcccccccCCCCCCcEEEccCCCCCCCCCCCCCCCCCcEEeecCCC
Q 047943 17 ELRYLHWYEYPLKTLPSNF-EPENLLELNLPYSKIETIWEVKKEAPKLKYINLHNSQYLTGMPDLSETPNLERLNILNCT 95 (479)
Q Consensus 17 ~Lr~L~~~~~~l~~lp~~~-~~~~L~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c~ 95 (479)
.+..|.++.+.+..+|+.. .+.+|+.|++.+++|+++|..+..+++|+.|++.-|+.....-.|+.+|.||.|+|.+|+
T Consensus 34 ~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltynn 113 (264)
T KOG0617|consen 34 NITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNN 113 (264)
T ss_pred hhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhccccc
Confidence 6788889999999999887 999999999999999999999999999999999987644333379999999999999865
Q ss_pred CCC-CCCccccccCCccccceeeccCCCceecCccccCCCCCCEEeccCCCCCCCCCEEecCCCCCCCccchhhhccccC
Q 047943 96 NLA-YIPSCIHNFNNLRSVIGLCLRNTAIEEVPSSIESLTKLEKLDLSYCTRLKGLCKLDLGYCSKFECFPEIIEKMERL 174 (479)
Q Consensus 96 ~l~-~~p~~l~~l~~L~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~L~~L~~L~L~~c~~l~~~p~~~~~l~~L 174 (479)
.-+ .+| +++-.+++|+.|+|++|.++-+|+.++.+++|+.|.+++ +.+-++|..++.+..|
T Consensus 114 l~e~~lp---gnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrd---------------ndll~lpkeig~lt~l 175 (264)
T KOG0617|consen 114 LNENSLP---GNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRD---------------NDLLSLPKEIGDLTRL 175 (264)
T ss_pred cccccCC---cchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeecc---------------CchhhCcHHHHHHHHH
Confidence 443 344 345556777789999999999999999999999999887 4556789999999999
Q ss_pred CeeeccCccccccCccccccc
Q 047943 175 RSVDLQSTEVEELPSSMENLE 195 (479)
Q Consensus 175 ~~L~L~~~~i~~lp~~i~~l~ 195 (479)
++|++.+|.+.-+|+.++++.
T Consensus 176 relhiqgnrl~vlppel~~l~ 196 (264)
T KOG0617|consen 176 RELHIQGNRLTVLPPELANLD 196 (264)
T ss_pred HHHhcccceeeecChhhhhhh
Confidence 999999999999998777654
No 19
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.53 E-value=2.3e-16 Score=134.88 Aligned_cols=168 Identities=30% Similarity=0.473 Sum_probs=125.8
Q ss_pred CCCCCCCCCCCcEEeecCCCCCCCCCccccccCCccccceeeccCCCceecCccccCCCCCCEEeccCCCCCCCCCEEec
Q 047943 76 GMPDLSETPNLERLNILNCTNLAYIPSCIHNFNNLRSVIGLCLRNTAIEEVPSSIESLTKLEKLDLSYCTRLKGLCKLDL 155 (479)
Q Consensus 76 ~~p~l~~l~~L~~L~L~~c~~l~~~p~~l~~l~~L~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~L~~L~~L~L 155 (479)
++|.+-++.++++|.|++| .+..+|+.+..+.+| ++|++.+|+|+++|.++..+++|+.|++.-
T Consensus 25 ~~~gLf~~s~ITrLtLSHN-Kl~~vppnia~l~nl---evln~~nnqie~lp~~issl~klr~lnvgm------------ 88 (264)
T KOG0617|consen 25 ELPGLFNMSNITRLTLSHN-KLTVVPPNIAELKNL---EVLNLSNNQIEELPTSISSLPKLRILNVGM------------ 88 (264)
T ss_pred hcccccchhhhhhhhcccC-ceeecCCcHHHhhhh---hhhhcccchhhhcChhhhhchhhhheecch------------
Confidence 3455556666777777773 455666666655554 447777788888888888888888888764
Q ss_pred CCCCCCCccchhhhccccCCeeeccCccccc--cCcccccccCCCCCCCCCCCCCCCCeeecCCCccccccCCCceeecC
Q 047943 156 GYCSKFECFPEIIEKMERLRSVDLQSTEVEE--LPSSMENLEGLKDLPDSLPNLKSLQFLNVERLFSIADLDKLEDLSIS 233 (479)
Q Consensus 156 ~~c~~l~~~p~~~~~l~~L~~L~L~~~~i~~--lp~~i~~l~~L~~lp~~l~~l~~L~~L~l~~l~~l~~l~~L~~L~l~ 233 (479)
+.+..+|..+|.++.|+.|++.+|++.+ +|..+ ..+..|+-|.++
T Consensus 89 ---nrl~~lprgfgs~p~levldltynnl~e~~lpgnf------------------------------f~m~tlralyl~ 135 (264)
T KOG0617|consen 89 ---NRLNILPRGFGSFPALEVLDLTYNNLNENSLPGNF------------------------------FYMTTLRALYLG 135 (264)
T ss_pred ---hhhhcCccccCCCchhhhhhccccccccccCCcch------------------------------hHHHHHHHHHhc
Confidence 4455667788888888888888887765 44322 223445566667
Q ss_pred CCCCCCCCcccCCCCCCCEEEcCCCCCccCCccCCCCCCCCEEeCCCCcCCccChhhhcC
Q 047943 234 GRRGLILPPLLSGLSSLTKLVLTCCDVIEIPQDIGCLSSLELLFLCGNNFSKFTCKYQST 293 (479)
Q Consensus 234 ~~~~~~lp~~~~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~~i~~ 293 (479)
+|....+|..++.+++|+.|.+.+|.+.++|..++.+..|++|.+.+|+++-+| ..+++
T Consensus 136 dndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl~vlp-pel~~ 194 (264)
T KOG0617|consen 136 DNDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRLTVLP-PELAN 194 (264)
T ss_pred CCCcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccceeeecC-hhhhh
Confidence 788888888888999999999999999999999999999999999999999998 55554
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.45 E-value=1.4e-14 Score=143.13 Aligned_cols=241 Identities=20% Similarity=0.203 Sum_probs=121.4
Q ss_pred CCCCceEEECCCCCCc-----ccccccCCCCCCcEEEccCCCCCC--C----CC-CCCCCCCCcEEeecCCCCCCCCCcc
Q 047943 36 EPENLLELNLPYSKIE-----TIWEVKKEAPKLKYINLHNSQYLT--G----MP-DLSETPNLERLNILNCTNLAYIPSC 103 (479)
Q Consensus 36 ~~~~L~~L~L~~s~i~-----~l~~~~~~l~~L~~L~Ls~~~~l~--~----~p-~l~~l~~L~~L~L~~c~~l~~~p~~ 103 (479)
...+|++|+++++.++ .++..+...++|+.++++++..-. . ++ .+..+++|++|++++|......+..
T Consensus 21 ~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 100 (319)
T cd00116 21 KLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGV 100 (319)
T ss_pred HHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHH
Confidence 4555777777777663 345556666677777777654331 0 11 2455667777777776554444444
Q ss_pred ccccCCccccceeeccCCCce-----ecCccccCC-CCCCEEeccCCCCCCCCCEEecCCCCCC----Cccchhhhcccc
Q 047943 104 IHNFNNLRSVIGLCLRNTAIE-----EVPSSIESL-TKLEKLDLSYCTRLKGLCKLDLGYCSKF----ECFPEIIEKMER 173 (479)
Q Consensus 104 l~~l~~L~~L~~L~L~~~~i~-----~lp~~i~~l-~~L~~L~L~~c~~L~~L~~L~L~~c~~l----~~~p~~~~~l~~ 173 (479)
+..+..-++|+.|++++|.+. .+...+..+ ++|+.|++++| ... ..++..+..+++
T Consensus 101 ~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n--------------~l~~~~~~~~~~~~~~~~~ 166 (319)
T cd00116 101 LESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRN--------------RLEGASCEALAKALRANRD 166 (319)
T ss_pred HHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCC--------------cCCchHHHHHHHHHHhCCC
Confidence 433332244566666666554 122233444 45555555543 222 112223333444
Q ss_pred CCeeeccCccccc--cCcccccccCCCCCCCCCCCCCCCCeeecCCC-----------ccccccCCCceeecCCCCCCC-
Q 047943 174 LRSVDLQSTEVEE--LPSSMENLEGLKDLPDSLPNLKSLQFLNVERL-----------FSIADLDKLEDLSISGRRGLI- 239 (479)
Q Consensus 174 L~~L~L~~~~i~~--lp~~i~~l~~L~~lp~~l~~l~~L~~L~l~~l-----------~~l~~l~~L~~L~l~~~~~~~- 239 (479)
|++|++++|.+.+ ++. ++..+..+++|+.|++++. ..+..+++|++|++++|....
T Consensus 167 L~~L~l~~n~l~~~~~~~----------l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~ 236 (319)
T cd00116 167 LKELNLANNGIGDAGIRA----------LAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDA 236 (319)
T ss_pred cCEEECcCCCCchHHHHH----------HHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchH
Confidence 5555555444432 000 0001111223333333331 123345667777777776321
Q ss_pred -CC---ccc-CCCCCCCEEEcCCCCCcc-----CCccCCCCCCCCEEeCCCCcCCccCh----hhhcCC-CchhHH
Q 047943 240 -LP---PLL-SGLSSLTKLVLTCCDVIE-----IPQDIGCLSSLELLFLCGNNFSKFTC----KYQSTF-TAEKTL 300 (479)
Q Consensus 240 -lp---~~~-~~l~~L~~L~L~~~~l~~-----lp~~l~~l~~L~~L~Ls~n~l~~lp~----~~i~~l-~~L~~L 300 (479)
+. ..+ ...+.|+.|++++|.+++ +...+..+++|+++++++|.++.-+. ..+... +.|+.+
T Consensus 237 ~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~ 312 (319)
T cd00116 237 GAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESL 312 (319)
T ss_pred HHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhc
Confidence 11 111 124678888888888762 44455566788888888888774321 223333 456666
No 21
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.32 E-value=4.8e-14 Score=135.17 Aligned_cols=119 Identities=18% Similarity=0.270 Sum_probs=92.5
Q ss_pred EEecCCCCCCCCCCCCCCCceEEECCCCCCcccc-cccCCCCCCcEEEccCCCCCCCCC-CCCCCCCCcEEeecCCCCCC
Q 047943 21 LHWYEYPLKTLPSNFEPENLLELNLPYSKIETIW-EVKKEAPKLKYINLHNSQYLTGMP-DLSETPNLERLNILNCTNLA 98 (479)
Q Consensus 21 L~~~~~~l~~lp~~~~~~~L~~L~L~~s~i~~l~-~~~~~l~~L~~L~Ls~~~~l~~~p-~l~~l~~L~~L~L~~c~~l~ 98 (479)
.+.++-.++.+|.+. ++.-+++.|..|+|+.+| ..|+.+++|++||||+|..-..-| .|.++++|.+|-+.+++.+.
T Consensus 51 VdCr~~GL~eVP~~L-P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~ 129 (498)
T KOG4237|consen 51 VDCRGKGLTEVPANL-PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT 129 (498)
T ss_pred EEccCCCcccCcccC-CCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh
Confidence 344455567777765 567899999999999998 558999999999999987554446 59999999999999978888
Q ss_pred CCCcc-ccccCCccccceeeccCCCceecC-ccccCCCCCCEEeccC
Q 047943 99 YIPSC-IHNFNNLRSVIGLCLRNTAIEEVP-SSIESLTKLEKLDLSY 143 (479)
Q Consensus 99 ~~p~~-l~~l~~L~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~ 143 (479)
.+|.. |+++.. |+.|.+.-|++..++ ..+..+++|..|.+.+
T Consensus 130 ~l~k~~F~gL~s---lqrLllNan~i~Cir~~al~dL~~l~lLslyD 173 (498)
T KOG4237|consen 130 DLPKGAFGGLSS---LQRLLLNANHINCIRQDALRDLPSLSLLSLYD 173 (498)
T ss_pred hhhhhHhhhHHH---HHHHhcChhhhcchhHHHHHHhhhcchhcccc
Confidence 88864 445544 445888888888665 4578888888888876
No 22
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.32 E-value=3.4e-13 Score=133.24 Aligned_cols=245 Identities=20% Similarity=0.200 Sum_probs=153.1
Q ss_pred CceEEEecCCCCC-----CCCCCC-CCCCceEEECCCCCCcc-------cccccCCCCCCcEEEccCCCCCCCCC-CCCC
Q 047943 17 ELRYLHWYEYPLK-----TLPSNF-EPENLLELNLPYSKIET-------IWEVKKEAPKLKYINLHNSQYLTGMP-DLSE 82 (479)
Q Consensus 17 ~Lr~L~~~~~~l~-----~lp~~~-~~~~L~~L~L~~s~i~~-------l~~~~~~l~~L~~L~Ls~~~~l~~~p-~l~~ 82 (479)
.|+.|.+.++.++ .++... ..+++++|+++++.+.. ++..++.+++|+.|++++|......+ .+..
T Consensus 24 ~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 103 (319)
T cd00116 24 CLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLES 103 (319)
T ss_pred hccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHH
Confidence 5899999999873 344444 67789999999987762 34566779999999999987654443 2333
Q ss_pred C---CCCcEEeecCCCCCCC-CCccccccCCc-cccceeeccCCCce-----ecCccccCCCCCCEEeccCCCCCCCCCE
Q 047943 83 T---PNLERLNILNCTNLAY-IPSCIHNFNNL-RSVIGLCLRNTAIE-----EVPSSIESLTKLEKLDLSYCTRLKGLCK 152 (479)
Q Consensus 83 l---~~L~~L~L~~c~~l~~-~p~~l~~l~~L-~~L~~L~L~~~~i~-----~lp~~i~~l~~L~~L~L~~c~~L~~L~~ 152 (479)
+ ++|++|++++|..... .+.....+..+ ++|+.|++++|.+. .+...+..+++|+.|++++|
T Consensus 104 l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n-------- 175 (319)
T cd00116 104 LLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANN-------- 175 (319)
T ss_pred HhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCC--------
Confidence 3 5599999999865421 11112234455 67888999999877 33445556667777777664
Q ss_pred EecCCCCCC----CccchhhhccccCCeeeccCccccccCcccccccCCCCCCCCCCCCCCCCeeecCCC--c-----cc
Q 047943 153 LDLGYCSKF----ECFPEIIEKMERLRSVDLQSTEVEELPSSMENLEGLKDLPDSLPNLKSLQFLNVERL--F-----SI 221 (479)
Q Consensus 153 L~L~~c~~l----~~~p~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~lp~~l~~l~~L~~L~l~~l--~-----~l 221 (479)
... ..++..+..+++|++|++++|.+.+... .. +...+..+++|+.|++++. . .+
T Consensus 176 ------~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~--~~------l~~~~~~~~~L~~L~ls~n~l~~~~~~~l 241 (319)
T cd00116 176 ------GIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGA--SA------LAETLASLKSLEVLNLGDNNLTDAGAAAL 241 (319)
T ss_pred ------CCchHHHHHHHHHHHhCCCCCEEeccCCccChHHH--HH------HHHHhcccCCCCEEecCCCcCchHHHHHH
Confidence 222 1122233334456666666555542110 00 0112233455555555551 1 11
Q ss_pred c-----ccCCCceeecCCCCCC-----CCCcccCCCCCCCEEEcCCCCCcc-----CCccCCCC-CCCCEEeCCCCcC
Q 047943 222 A-----DLDKLEDLSISGRRGL-----ILPPLLSGLSSLTKLVLTCCDVIE-----IPQDIGCL-SSLELLFLCGNNF 283 (479)
Q Consensus 222 ~-----~l~~L~~L~l~~~~~~-----~lp~~~~~l~~L~~L~L~~~~l~~-----lp~~l~~l-~~L~~L~Ls~n~l 283 (479)
. ..+.|++|++++|... .+...+..+++|+.+++++|.+.+ +...+... +.|++|++.+|.+
T Consensus 242 ~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 242 ASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred HHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 1 1367888888888742 334445566899999999999885 44445555 7899999988753
No 23
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.19 E-value=1.9e-11 Score=134.01 Aligned_cols=110 Identities=28% Similarity=0.384 Sum_probs=54.5
Q ss_pred CCCCCCCCCceEEECCCCCCcccccccCCCCCCcEEEccCCCC-CCCCCC--CCCCCCCcEEeecCCCCCCCCCcccccc
Q 047943 31 LPSNFEPENLLELNLPYSKIETIWEVKKEAPKLKYINLHNSQY-LTGMPD--LSETPNLERLNILNCTNLAYIPSCIHNF 107 (479)
Q Consensus 31 lp~~~~~~~L~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~-l~~~p~--l~~l~~L~~L~L~~c~~l~~~p~~l~~l 107 (479)
.|...+....+...+-++++..++.... .++|++|-+.++.. +..++. |..++.|+.|+|++|..+..+|.+++++
T Consensus 516 ~~~~~~~~~~rr~s~~~~~~~~~~~~~~-~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~L 594 (889)
T KOG4658|consen 516 IPQVKSWNSVRRMSLMNNKIEHIAGSSE-NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGEL 594 (889)
T ss_pred cccccchhheeEEEEeccchhhccCCCC-CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhh
Confidence 3333344444444444444444433322 22455555544432 333332 4445555555555555555555555555
Q ss_pred CCccccceeeccCCCceecCccccCCCCCCEEeccCC
Q 047943 108 NNLRSVIGLCLRNTAIEEVPSSIESLTKLEKLDLSYC 144 (479)
Q Consensus 108 ~~L~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c 144 (479)
.+|+ +|+++++.+.++|.+++++++|.+||+...
T Consensus 595 i~Lr---yL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~ 628 (889)
T KOG4658|consen 595 VHLR---YLDLSDTGISHLPSGLGNLKKLIYLNLEVT 628 (889)
T ss_pred hhhh---cccccCCCccccchHHHHHHhhheeccccc
Confidence 5544 355555555666666666666666665543
No 24
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.02 E-value=2.1e-10 Score=126.03 Aligned_cols=302 Identities=22% Similarity=0.250 Sum_probs=180.5
Q ss_pred cCceEEEecCCCCCCCCCCCCCCCceEEECCCCC--Ccccc-cccCCCCCCcEEEccCCCCCCCCC-CCCCCCCCcEEee
Q 047943 16 EELRYLHWYEYPLKTLPSNFEPENLLELNLPYSK--IETIW-EVKKEAPKLKYINLHNSQYLTGMP-DLSETPNLERLNI 91 (479)
Q Consensus 16 ~~Lr~L~~~~~~l~~lp~~~~~~~L~~L~L~~s~--i~~l~-~~~~~l~~L~~L~Ls~~~~l~~~p-~l~~l~~L~~L~L 91 (479)
...|...+.++.+..++.....++|++|-+..+. +..++ +.+..++.|++|||++|..+.++| .++.+-+|++|++
T Consensus 523 ~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L 602 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDL 602 (889)
T ss_pred hheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccc
Confidence 4789999999999999999988899999999986 55554 447889999999999999999999 5899999999999
Q ss_pred cCCCCCCCCCccccccCCccccceeeccCCCcee-cCccccCCCCCCEEeccCCC------------CCCCCCEEecCCC
Q 047943 92 LNCTNLAYIPSCIHNFNNLRSVIGLCLRNTAIEE-VPSSIESLTKLEKLDLSYCT------------RLKGLCKLDLGYC 158 (479)
Q Consensus 92 ~~c~~l~~~p~~l~~l~~L~~L~~L~L~~~~i~~-lp~~i~~l~~L~~L~L~~c~------------~L~~L~~L~L~~c 158 (479)
++ +.+..+|.++++++.|.+ |++..+...+ +|.....+.+|++|.+..-. +++.|+.+....+
T Consensus 603 ~~-t~I~~LP~~l~~Lk~L~~---Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~ 678 (889)
T KOG4658|consen 603 SD-TGISHLPSGLGNLKKLIY---LNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITIS 678 (889)
T ss_pred cC-CCccccchHHHHHHhhhe---eccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecc
Confidence 99 667899999988876555 8998886543 34445558999999886521 2222222222211
Q ss_pred CCCCccchhhhccccCC----eeeccCccccccCcccccccCCCCCCCCCCCCCCCCeeecCCCccc------------c
Q 047943 159 SKFECFPEIIEKMERLR----SVDLQSTEVEELPSSMENLEGLKDLPDSLPNLKSLQFLNVERLFSI------------A 222 (479)
Q Consensus 159 ~~l~~~p~~~~~l~~L~----~L~L~~~~i~~lp~~i~~l~~L~~lp~~l~~l~~L~~L~l~~l~~l------------~ 222 (479)
+. .+-+.+..+..|. .+.+.+ ......+..+..+.+|+.|.+.++... .
T Consensus 679 s~--~~~e~l~~~~~L~~~~~~l~~~~-------------~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~ 743 (889)
T KOG4658|consen 679 SV--LLLEDLLGMTRLRSLLQSLSIEG-------------CSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVL 743 (889)
T ss_pred hh--HhHhhhhhhHHHHHHhHhhhhcc-------------cccceeecccccccCcceEEEEcCCCchhhcccccccchh
Confidence 11 0001111111111 111100 222334455566677777776653111 1
Q ss_pred -ccCCCceeecCCCCCCCCCcccCCCCCCCEEEcCCCCCcc-CCccCCCCCCCCEEeCCCCcCCccC-hhhhcCCCchhH
Q 047943 223 -DLDKLEDLSISGRRGLILPPLLSGLSSLTKLVLTCCDVIE-IPQDIGCLSSLELLFLCGNNFSKFT-CKYQSTFTAEKT 299 (479)
Q Consensus 223 -~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~-lp~~l~~l~~L~~L~Ls~n~l~~lp-~~~i~~l~~L~~ 299 (479)
.++++..+.+.+|.....+.+..-.++|+.|.+..|...+ +......+..++.+.+..+.+..++ ....+.++++..
T Consensus 744 ~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~ 823 (889)
T KOG4658|consen 744 LCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYW 823 (889)
T ss_pred hhHHHHHHHHhhccccccccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEe
Confidence 1445666666677655555555556899999999998766 3333333333443333333322221 012222222222
Q ss_pred HHHHhhhhhhhhccCCccccCCCccccccCCCCccccccCC-cccc
Q 047943 300 LLELLQYATVITRASSSSTLFSCNELQAAPVFARASIMSTR-IRRI 344 (479)
Q Consensus 300 L~~~L~~n~~~~~~~~~~~l~~C~~L~~lp~lp~~~~~~~C-~~L~ 344 (479)
+ .+.+-.+ .+ ..+..|+++..+|...... ..+| .++.
T Consensus 824 ~--~l~~~~l-~~----~~ve~~p~l~~~P~~~~~~-i~~~~~~~~ 861 (889)
T KOG4658|consen 824 L--PLSFLKL-EE----LIVEECPKLGKLPLLSTLT-IVGCEEKLK 861 (889)
T ss_pred c--ccCccch-hh----eehhcCcccccCccccccc-eecccccee
Confidence 2 1111110 00 0777799999988765533 3343 4443
No 25
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.98 E-value=4.9e-10 Score=114.25 Aligned_cols=191 Identities=29% Similarity=0.484 Sum_probs=90.9
Q ss_pred EEEccCCCCCCCCCCCCCCCCCcEEeecCCCCCCCCCccccccCCccccceeeccCCCceecCccccCCCCCCEEeccCC
Q 047943 65 YINLHNSQYLTGMPDLSETPNLERLNILNCTNLAYIPSCIHNFNNLRSVIGLCLRNTAIEEVPSSIESLTKLEKLDLSYC 144 (479)
Q Consensus 65 ~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c~~l~~~p~~l~~l~~L~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c 144 (479)
.++++.+........+...++++.|++.+ ..+..++....... ..|+.|++++|.+..+|..++.+++|+.|++++
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~-n~i~~i~~~~~~~~--~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~- 172 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDN-NNITDIPPLIGLLK--SNLKELDLSDNKIESLPSPLRNLPNLKNLDLSF- 172 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCC-cccccCccccccch--hhcccccccccchhhhhhhhhccccccccccCC-
Confidence 34555444333333344445555555555 23334443333332 123345566665555555555555555555554
Q ss_pred CCCCCCCEEecCCCCCCCccchhhhccccCCeeeccCccccccCcccccccCCCCCCCCCCCCCCCCeeecCC------C
Q 047943 145 TRLKGLCKLDLGYCSKFECFPEIIEKMERLRSVDLQSTEVEELPSSMENLEGLKDLPDSLPNLKSLQFLNVER------L 218 (479)
Q Consensus 145 ~~L~~L~~L~L~~c~~l~~~p~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~lp~~l~~l~~L~~L~l~~------l 218 (479)
+.+..+|...+..++|+.|++++|.+..+|..++... .|+++.+++ .
T Consensus 173 --------------N~l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~-------------~L~~l~~~~N~~~~~~ 225 (394)
T COG4886 173 --------------NDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLS-------------ALEELDLSNNSIIELL 225 (394)
T ss_pred --------------chhhhhhhhhhhhhhhhheeccCCccccCchhhhhhh-------------hhhhhhhcCCcceecc
Confidence 3344444444455566666666666666655332211 122222222 1
Q ss_pred ccccccCCCceeecCCCCCCCCCcccCCCCCCCEEEcCCCCCccCCccCCCCCCCCEEeCCCCcCCccC
Q 047943 219 FSIADLDKLEDLSISGRRGLILPPLLSGLSSLTKLVLTCCDVIEIPQDIGCLSSLELLFLCGNNFSKFT 287 (479)
Q Consensus 219 ~~l~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp 287 (479)
..+..+.++..+.+.++....++..+..+++++.|++++|.+.+++. ++.+.+++.|+++++.+..++
T Consensus 226 ~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~~~~ 293 (394)
T COG4886 226 SSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLSNAL 293 (394)
T ss_pred hhhhhcccccccccCCceeeeccchhccccccceecccccccccccc-ccccCccCEEeccCccccccc
Confidence 12233333444444444444434445555555555555555555444 555555555555555544443
No 26
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.98 E-value=1.8e-09 Score=110.19 Aligned_cols=196 Identities=27% Similarity=0.393 Sum_probs=112.0
Q ss_pred EEECCCCCCcccccccCCCCCCcEEEccCCCCCCCCCC-CCCCC-CCcEEeecCCCCCCCCCccccccCCccccceeecc
Q 047943 42 ELNLPYSKIETIWEVKKEAPKLKYINLHNSQYLTGMPD-LSETP-NLERLNILNCTNLAYIPSCIHNFNNLRSVIGLCLR 119 (479)
Q Consensus 42 ~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~l~-~L~~L~L~~c~~l~~~p~~l~~l~~L~~L~~L~L~ 119 (479)
.+.+..+.+......+..++.++.|++.++. +.+++. ...+. +|+.|+++++. +..+|..+ ..++.|+.|+++
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~-i~~i~~~~~~~~~nL~~L~l~~N~-i~~l~~~~---~~l~~L~~L~l~ 171 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNNN-ITDIPPLIGLLKSNLKELDLSDNK-IESLPSPL---RNLPNLKNLDLS 171 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCcc-cccCccccccchhhcccccccccc-hhhhhhhh---hccccccccccC
Confidence 3455555543333444455666666666653 344443 33332 66666666633 33333223 333344446777
Q ss_pred CCCceecCccccCCCCCCEEeccCCCCCCCCCEEecCCCCCCCccchhhhccccCCeeeccCccccccCcccccccCCCC
Q 047943 120 NTAIEEVPSSIESLTKLEKLDLSYCTRLKGLCKLDLGYCSKFECFPEIIEKMERLRSVDLQSTEVEELPSSMENLEGLKD 199 (479)
Q Consensus 120 ~~~i~~lp~~i~~l~~L~~L~L~~c~~L~~L~~L~L~~c~~l~~~p~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~ 199 (479)
+|.+.++|...+.+++|+.|++++ ..+..+|...+....|++|.+.+|.+.+.+..+.++.++..
T Consensus 172 ~N~l~~l~~~~~~~~~L~~L~ls~---------------N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~ 236 (394)
T COG4886 172 FNDLSDLPKLLSNLSNLNNLDLSG---------------NKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSG 236 (394)
T ss_pred CchhhhhhhhhhhhhhhhheeccC---------------CccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccc
Confidence 777777776665666666666665 44555555554555566666666654444444444333322
Q ss_pred CCCCCCCCCCCCeeecCCCccccccCCCceeecCCCCCCCCCcccCCCCCCCEEEcCCCCCccCCc
Q 047943 200 LPDSLPNLKSLQFLNVERLFSIADLDKLEDLSISGRRGLILPPLLSGLSSLTKLVLTCCDVIEIPQ 265 (479)
Q Consensus 200 lp~~l~~l~~L~~L~l~~l~~l~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~lp~ 265 (479)
+. +..-+..++ ...++.+++++.|++++|....++. +....+++.|+++++.+..++.
T Consensus 237 l~-----l~~n~~~~~--~~~~~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 237 LE-----LSNNKLEDL--PESIGNLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred cc-----cCCceeeec--cchhccccccceecccccccccccc-ccccCccCEEeccCccccccch
Confidence 21 000000000 1345667778888888899888877 8888999999999999888444
No 27
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.94 E-value=1.9e-11 Score=122.43 Aligned_cols=167 Identities=23% Similarity=0.341 Sum_probs=94.2
Q ss_pred cEEeecCCCCCCCCCccccccCCccccceeeccCCCceecCccccCCCCCCEEeccCCCCCCCCCEEecCCCCCCCccch
Q 047943 87 ERLNILNCTNLAYIPSCIHNFNNLRSVIGLCLRNTAIEEVPSSIESLTKLEKLDLSYCTRLKGLCKLDLGYCSKFECFPE 166 (479)
Q Consensus 87 ~~L~L~~c~~l~~~p~~l~~l~~L~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~L~~L~~L~L~~c~~l~~~p~ 166 (479)
...+++.| ....+|..+..+..|.. +.|+.|.+..+|..+.++..|.+|+++. +.+..+|.
T Consensus 78 ~~aDlsrN-R~~elp~~~~~f~~Le~---liLy~n~~r~ip~~i~~L~~lt~l~ls~---------------NqlS~lp~ 138 (722)
T KOG0532|consen 78 VFADLSRN-RFSELPEEACAFVSLES---LILYHNCIRTIPEAICNLEALTFLDLSS---------------NQLSHLPD 138 (722)
T ss_pred hhhhcccc-ccccCchHHHHHHHHHH---HHHHhccceecchhhhhhhHHHHhhhcc---------------chhhcCCh
Confidence 34455552 33445554444443333 5566666666666666666666665554 33444555
Q ss_pred hhhccccCCeeeccCccccccCcccccccCCCCCCCCCCCCCCCCeeecCC------CccccccCCCceeecCCCCCCCC
Q 047943 167 IIEKMERLRSVDLQSTEVEELPSSMENLEGLKDLPDSLPNLKSLQFLNVER------LFSIADLDKLEDLSISGRRGLIL 240 (479)
Q Consensus 167 ~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~lp~~l~~l~~L~~L~l~~------l~~l~~l~~L~~L~l~~~~~~~l 240 (479)
.+..++ |+.|.+++|+++.+|..++ .+..|..|+.+. .+.++++.+|+.|.+..|....+
T Consensus 139 ~lC~lp-Lkvli~sNNkl~~lp~~ig-------------~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~l 204 (722)
T KOG0532|consen 139 GLCDLP-LKVLIVSNNKLTSLPEEIG-------------LLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDL 204 (722)
T ss_pred hhhcCc-ceeEEEecCccccCCcccc-------------cchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhC
Confidence 555543 6666666666666555444 344455555544 13445556666666666666666
Q ss_pred CcccCCCCCCCEEEcCCCCCccCCccCCCCCCCCEEeCCCCcCCccC
Q 047943 241 PPLLSGLSSLTKLVLTCCDVIEIPQDIGCLSSLELLFLCGNNFSKFT 287 (479)
Q Consensus 241 p~~~~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp 287 (479)
|..+. .-.|..||+++|++..||-.+..++.|++|-|.+|.+++-|
T Consensus 205 p~El~-~LpLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqSPP 250 (722)
T KOG0532|consen 205 PEELC-SLPLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQSPP 250 (722)
T ss_pred CHHHh-CCceeeeecccCceeecchhhhhhhhheeeeeccCCCCCCh
Confidence 66555 23466666666666666666666666666666666666665
No 28
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.92 E-value=4.3e-11 Score=119.97 Aligned_cols=210 Identities=20% Similarity=0.249 Sum_probs=140.6
Q ss_pred EEecCCCCCCCCCCC---CCCCceEEECCCCCCcccccccCCCCCCcEEEccCCCCCCCCCCCCCCCCCcEEeecCCCCC
Q 047943 21 LHWYEYPLKTLPSNF---EPENLLELNLPYSKIETIWEVKKEAPKLKYINLHNSQYLTGMPDLSETPNLERLNILNCTNL 97 (479)
Q Consensus 21 L~~~~~~l~~lp~~~---~~~~L~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c~~l 97 (479)
|.+++-.++.+|... .+..-+..+|+.|.+..+|..+..+..|..+.|++|.+-...+.+.++..|.+|+|+.| .+
T Consensus 55 l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~N-ql 133 (722)
T KOG0532|consen 55 LLLSGRRLKEFPRGAASYDLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSN-QL 133 (722)
T ss_pred cccccchhhcCCCccccccccchhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccc-hh
Confidence 344455555555432 45556667777777777777777777777777777654444446777777777777774 34
Q ss_pred CCCCccccccCCccccceeeccCCCceecCccccCCCCCCEEeccCCCCCCCCCEEecCCCCCCCccchhhhccccCCee
Q 047943 98 AYIPSCIHNFNNLRSVIGLCLRNTAIEEVPSSIESLTKLEKLDLSYCTRLKGLCKLDLGYCSKFECFPEIIEKMERLRSV 177 (479)
Q Consensus 98 ~~~p~~l~~l~~L~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~L~~L~~L~L~~c~~l~~~p~~~~~l~~L~~L 177 (479)
..+|..+..|. |++|-+++|+++.+|..++.+.+|..||.+. +.+..+|..++++.+|+.|
T Consensus 134 S~lp~~lC~lp----Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~---------------nei~slpsql~~l~slr~l 194 (722)
T KOG0532|consen 134 SHLPDGLCDLP----LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSK---------------NEIQSLPSQLGYLTSLRDL 194 (722)
T ss_pred hcCChhhhcCc----ceeEEEecCccccCCcccccchhHHHhhhhh---------------hhhhhchHHhhhHHHHHHH
Confidence 55666666554 6777777777788888787777777777765 4456667777777777777
Q ss_pred eccCccccccCcccccccCCCCCCCCCCCCCCCCeeecCCCccccccCCCceeecCCCCCCCCCcccCCCCCCCEEEcCC
Q 047943 178 DLQSTEVEELPSSMENLEGLKDLPDSLPNLKSLQFLNVERLFSIADLDKLEDLSISGRRGLILPPLLSGLSSLTKLVLTC 257 (479)
Q Consensus 178 ~L~~~~i~~lp~~i~~l~~L~~lp~~l~~l~~L~~L~l~~l~~l~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~L~~ 257 (479)
.+..|.+..+|..+..+ .|.+||++.|+...+|..|..|..|++|-|.+
T Consensus 195 ~vrRn~l~~lp~El~~L-------------------------------pLi~lDfScNkis~iPv~fr~m~~Lq~l~Len 243 (722)
T KOG0532|consen 195 NVRRNHLEDLPEELCSL-------------------------------PLIRLDFSCNKISYLPVDFRKMRHLQVLQLEN 243 (722)
T ss_pred HHhhhhhhhCCHHHhCC-------------------------------ceeeeecccCceeecchhhhhhhhheeeeecc
Confidence 77777777776644322 25666777777788888888888888888888
Q ss_pred CCCccCCccC---CCCCCCCEEeCCCC
Q 047943 258 CDVIEIPQDI---GCLSSLELLFLCGN 281 (479)
Q Consensus 258 ~~l~~lp~~l---~~l~~L~~L~Ls~n 281 (479)
|.+..-|..+ |...=.++|+..-|
T Consensus 244 NPLqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 244 NPLQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred CCCCCChHHHHhccceeeeeeecchhc
Confidence 8777755443 33334556665555
No 29
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=9.3e-10 Score=107.42 Aligned_cols=205 Identities=18% Similarity=0.234 Sum_probs=98.2
Q ss_pred CCCCceEEECCCCCCcccc--cccCCCCCCcEEEccCCCCCCCCC---CCCCCCCCcEEeecCCCCCCCCCccccccCCc
Q 047943 36 EPENLLELNLPYSKIETIW--EVKKEAPKLKYINLHNSQYLTGMP---DLSETPNLERLNILNCTNLAYIPSCIHNFNNL 110 (479)
Q Consensus 36 ~~~~L~~L~L~~s~i~~l~--~~~~~l~~L~~L~Ls~~~~l~~~p---~l~~l~~L~~L~L~~c~~l~~~p~~l~~l~~L 110 (479)
++++|+++.|.++.+...+ +..+.|++++.||||+|-.-.--+ -...+|+|+.|+++.|............ .+
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~--~l 196 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTL--LL 196 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchh--hh
Confidence 4555666666666555443 244556666666666542211111 1244556666666554332111111100 22
Q ss_pred cccceeeccCCCce--ecCccccCCCCCCEEeccCCCCCCCCCEEecCCCCCCCccchhhhccccCCeeeccCccccccC
Q 047943 111 RSVIGLCLRNTAIE--EVPSSIESLTKLEKLDLSYCTRLKGLCKLDLGYCSKFECFPEIIEKMERLRSVDLQSTEVEELP 188 (479)
Q Consensus 111 ~~L~~L~L~~~~i~--~lp~~i~~l~~L~~L~L~~c~~L~~L~~L~L~~c~~l~~~p~~~~~l~~L~~L~L~~~~i~~lp 188 (479)
++|+.|.+++|+++ ++-.... .+++|+.|.|.+|............+..|++|+|++|.+..++
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~--------------~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~ 262 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILL--------------TFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFD 262 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHH--------------hCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccc
Confidence 33333444444333 1111122 3444445555555322222222233346677777777666544
Q ss_pred cccccccCCCCCCCCCCCCCCCCeeecCCCccccccCCCceeecCCCCC--CCCCcc-----cCCCCCCCEEEcCCCCCc
Q 047943 189 SSMENLEGLKDLPDSLPNLKSLQFLNVERLFSIADLDKLEDLSISGRRG--LILPPL-----LSGLSSLTKLVLTCCDVI 261 (479)
Q Consensus 189 ~~i~~l~~L~~lp~~l~~l~~L~~L~l~~l~~l~~l~~L~~L~l~~~~~--~~lp~~-----~~~l~~L~~L~L~~~~l~ 261 (479)
.. ...+.++.|..|+++.|.. ...|+. ...+++|+.|++..|++.
T Consensus 263 ~~----------------------------~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~ 314 (505)
T KOG3207|consen 263 QG----------------------------YKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR 314 (505)
T ss_pred cc----------------------------cccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccc
Confidence 21 1122333444444444442 222332 235678888888888886
Q ss_pred cCC--ccCCCCCCCCEEeCCCCcCC
Q 047943 262 EIP--QDIGCLSSLELLFLCGNNFS 284 (479)
Q Consensus 262 ~lp--~~l~~l~~L~~L~Ls~n~l~ 284 (479)
+.+ ..+..+++|+.|.+.+|.++
T Consensus 315 ~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 315 DWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred cccccchhhccchhhhhhccccccc
Confidence 633 34566777888888787765
No 30
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.73 E-value=3.2e-09 Score=103.73 Aligned_cols=209 Identities=20% Similarity=0.188 Sum_probs=121.8
Q ss_pred CCCCCCcEEEccCCCCCCCCC---CCCCCCCCcEEeecCCCCCCCCCccccccCCccccceeeccCCCceecCccccCCC
Q 047943 58 KEAPKLKYINLHNSQYLTGMP---DLSETPNLERLNILNCTNLAYIPSCIHNFNNLRSVIGLCLRNTAIEEVPSSIESLT 134 (479)
Q Consensus 58 ~~l~~L~~L~Ls~~~~l~~~p---~l~~l~~L~~L~L~~c~~l~~~p~~l~~l~~L~~L~~L~L~~~~i~~lp~~i~~l~ 134 (479)
.++.+|+.+.|.++.- ...+ ....+++++.|+|++| .+...-....-+..|++|+.|+++.|.+...-++..
T Consensus 118 sn~kkL~~IsLdn~~V-~~~~~~~~~k~~~~v~~LdLS~N-L~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~--- 192 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRV-EDAGIEEYSKILPNVRDLDLSRN-LFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNT--- 192 (505)
T ss_pred hhHHhhhheeecCccc-cccchhhhhhhCCcceeecchhh-hHHhHHHHHHHHHhcccchhcccccccccCCccccc---
Confidence 3566666666665532 1122 2344666666666663 222222222233344445555555555432211110
Q ss_pred CCCEEeccCCCCCCCCCEEecCCCCCCC-ccchhhhccccCCeeeccCccccccCcccccccCCCCCCCCCCCCCCCCee
Q 047943 135 KLEKLDLSYCTRLKGLCKLDLGYCSKFE-CFPEIIEKMERLRSVDLQSTEVEELPSSMENLEGLKDLPDSLPNLKSLQFL 213 (479)
Q Consensus 135 ~L~~L~L~~c~~L~~L~~L~L~~c~~l~-~~p~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~lp~~l~~l~~L~~L 213 (479)
.. .+..|+.|.+++|.... .+...+...++|+.|++.+|....+-.
T Consensus 193 ---~~------~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~------------------------ 239 (505)
T KOG3207|consen 193 ---TL------LLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKA------------------------ 239 (505)
T ss_pred ---hh------hhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceec------------------------
Confidence 00 34456677777776653 344456677888888888884211100
Q ss_pred ecCCCccccccCCCceeecCCCCCCCCC--cccCCCCCCCEEEcCCCCCcc--CCcc-----CCCCCCCCEEeCCCCcCC
Q 047943 214 NVERLFSIADLDKLEDLSISGRRGLILP--PLLSGLSSLTKLVLTCCDVIE--IPQD-----IGCLSSLELLFLCGNNFS 284 (479)
Q Consensus 214 ~l~~l~~l~~l~~L~~L~l~~~~~~~lp--~~~~~l~~L~~L~L~~~~l~~--lp~~-----l~~l~~L~~L~Ls~n~l~ 284 (479)
.+...+..|+.|++++|....++ ...+.++.|+.|+++.|++.+ +|+. ...+++|++|+++.|++.
T Consensus 240 -----~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~ 314 (505)
T KOG3207|consen 240 -----TSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR 314 (505)
T ss_pred -----chhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccc
Confidence 01122345677777778865555 346788999999999999988 5654 467899999999999987
Q ss_pred ccCh-hhhcCCCchhHHHHHhhhhhhhh
Q 047943 285 KFTC-KYQSTFTAEKTLLELLQYATVIT 311 (479)
Q Consensus 285 ~lp~-~~i~~l~~L~~L~~~L~~n~~~~ 311 (479)
.++. ..+..+.+|+.| ....|.+..
T Consensus 315 ~w~sl~~l~~l~nlk~l--~~~~n~ln~ 340 (505)
T KOG3207|consen 315 DWRSLNHLRTLENLKHL--RITLNYLNK 340 (505)
T ss_pred cccccchhhccchhhhh--hcccccccc
Confidence 6651 144556677777 555565543
No 31
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.73 E-value=5.9e-09 Score=92.74 Aligned_cols=134 Identities=30% Similarity=0.371 Sum_probs=37.5
Q ss_pred CCCCCCCCCCCCceEEECCCCCCcccccccC-CCCCCcEEEccCCCCCCCCCCCCCCCCCcEEeecCCCCCCCCCccccc
Q 047943 28 LKTLPSNFEPENLLELNLPYSKIETIWEVKK-EAPKLKYINLHNSQYLTGMPDLSETPNLERLNILNCTNLAYIPSCIHN 106 (479)
Q Consensus 28 l~~lp~~~~~~~L~~L~L~~s~i~~l~~~~~-~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c~~l~~~p~~l~~ 106 (479)
++..|..-++.++++|+|.++.|+.+ +.++ .+.+|+.|++++|. ++.++.+..+++|+.|++++|. +..++..+.
T Consensus 9 i~~~~~~~n~~~~~~L~L~~n~I~~I-e~L~~~l~~L~~L~Ls~N~-I~~l~~l~~L~~L~~L~L~~N~-I~~i~~~l~- 84 (175)
T PF14580_consen 9 IEQIAQYNNPVKLRELNLRGNQISTI-ENLGATLDKLEVLDLSNNQ-ITKLEGLPGLPRLKTLDLSNNR-ISSISEGLD- 84 (175)
T ss_dssp ----------------------------S--TT-TT--EEE-TTS---S--TT----TT--EEE--SS----S-CHHHH-
T ss_pred cccccccccccccccccccccccccc-cchhhhhcCCCEEECCCCC-CccccCccChhhhhhcccCCCC-CCccccchH-
Confidence 34444444566677777777777666 3344 46777777777764 4556666777777777777743 333333222
Q ss_pred cCCccccceeeccCCCceecCc--cccCCCCCCEEeccCCCCCCCCCEEecCCCCCCCc---cchhhhccccCCeeecc
Q 047943 107 FNNLRSVIGLCLRNTAIEEVPS--SIESLTKLEKLDLSYCTRLKGLCKLDLGYCSKFEC---FPEIIEKMERLRSVDLQ 180 (479)
Q Consensus 107 l~~L~~L~~L~L~~~~i~~lp~--~i~~l~~L~~L~L~~c~~L~~L~~L~L~~c~~l~~---~p~~~~~l~~L~~L~L~ 180 (479)
..++.|++|++++|.|.++.. .+..+++|+.|++.+ |..... -..++..+++|+.||-.
T Consensus 85 -~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~--------------NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 85 -KNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEG--------------NPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp -HH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT---------------GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred -HhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccC--------------CcccchhhHHHHHHHHcChhheeCCE
Confidence 124445567777777765432 233444444444444 332211 22456677777777654
No 32
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.71 E-value=1.2e-08 Score=90.80 Aligned_cols=124 Identities=23% Similarity=0.284 Sum_probs=55.2
Q ss_pred cCceEEEecCCCCCCCCCCC-CCCCceEEECCCCCCcccccccCCCCCCcEEEccCCCCCCCCC-CC-CCCCCCcEEeec
Q 047943 16 EELRYLHWYEYPLKTLPSNF-EPENLLELNLPYSKIETIWEVKKEAPKLKYINLHNSQYLTGMP-DL-SETPNLERLNIL 92 (479)
Q Consensus 16 ~~Lr~L~~~~~~l~~lp~~~-~~~~L~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p-~l-~~l~~L~~L~L~ 92 (479)
-++|.|+++++.++.+...- .+.+|+.|+|++|.|+.+ +++..+++|+.|++++|.. +.++ .+ ..+++|++|+++
T Consensus 19 ~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l-~~l~~L~~L~~L~L~~N~I-~~i~~~l~~~lp~L~~L~L~ 96 (175)
T PF14580_consen 19 VKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKL-EGLPGLPRLKTLDLSNNRI-SSISEGLDKNLPNLQELYLS 96 (175)
T ss_dssp -----------------S--TT-TT--EEE-TTS--S---TT----TT--EEE--SS----S-CHHHHHH-TT--EEE-T
T ss_pred cccccccccccccccccchhhhhcCCCEEECCCCCCccc-cCccChhhhhhcccCCCCC-CccccchHHhCCcCCEEECc
Confidence 36899999999999886554 688999999999999998 5788899999999999864 4454 34 358999999999
Q ss_pred CCCCCCCCCccccccCCccccceeeccCCCceecCc----cccCCCCCCEEeccC
Q 047943 93 NCTNLAYIPSCIHNFNNLRSVIGLCLRNTAIEEVPS----SIESLTKLEKLDLSY 143 (479)
Q Consensus 93 ~c~~l~~~p~~l~~l~~L~~L~~L~L~~~~i~~lp~----~i~~l~~L~~L~L~~ 143 (479)
+|.. ..+ ..+..+..+++|++|++.+|.+.+-+. .+..+|+|+.||-..
T Consensus 97 ~N~I-~~l-~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 97 NNKI-SDL-NELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp TS----SC-CCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred CCcC-CCh-HHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence 8654 333 346778888899999999999875542 467788999888654
No 33
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.70 E-value=4.7e-09 Score=97.89 Aligned_cols=129 Identities=25% Similarity=0.296 Sum_probs=64.6
Q ss_pred ccceeeccCCCceecCccccCCCCCCEEeccCCCCCCCCCEEecCCCCCCCccchhhhccccCCeeeccCccccccCccc
Q 047943 112 SVIGLCLRNTAIEEVPSSIESLTKLEKLDLSYCTRLKGLCKLDLGYCSKFECFPEIIEKMERLRSVDLQSTEVEELPSSM 191 (479)
Q Consensus 112 ~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~L~~L~~L~L~~c~~l~~~p~~~~~l~~L~~L~L~~~~i~~lp~~i 191 (479)
.|++++|++|.|+++..++.-.++++.|+++.+ .+..+ ..+..+.+|+.|++++|.+.++.-+-
T Consensus 285 ~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N---------------~i~~v-~nLa~L~~L~~LDLS~N~Ls~~~Gwh 348 (490)
T KOG1259|consen 285 ELTELDLSGNLITQIDESVKLAPKLRRLILSQN---------------RIRTV-QNLAELPQLQLLDLSGNLLAECVGWH 348 (490)
T ss_pred hhhhccccccchhhhhhhhhhccceeEEecccc---------------ceeee-hhhhhcccceEeecccchhHhhhhhH
Confidence 356667777766666666666666666666552 11111 12344445555555555444322110
Q ss_pred ccccCCCCCCCCCCCCCCCCeeecCCCccccccCCCceeecCCCCCCCCCcccCCCCCCCEEEcCCCCCcc--CCccCCC
Q 047943 192 ENLEGLKDLPDSLPNLKSLQFLNVERLFSIADLDKLEDLSISGRRGLILPPLLSGLSSLTKLVLTCCDVIE--IPQDIGC 269 (479)
Q Consensus 192 ~~l~~L~~lp~~l~~l~~L~~L~l~~l~~l~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~--lp~~l~~ 269 (479)
..+-+.+.|.+++|....+.. +..+.+|..|++++|++.+ --..+|+
T Consensus 349 ------------------------------~KLGNIKtL~La~N~iE~LSG-L~KLYSLvnLDl~~N~Ie~ldeV~~IG~ 397 (490)
T KOG1259|consen 349 ------------------------------LKLGNIKTLKLAQNKIETLSG-LRKLYSLVNLDLSSNQIEELDEVNHIGN 397 (490)
T ss_pred ------------------------------hhhcCEeeeehhhhhHhhhhh-hHhhhhheeccccccchhhHHHhccccc
Confidence 011223333333343333322 4445566666666666554 2334566
Q ss_pred CCCCCEEeCCCCcCCccC
Q 047943 270 LSSLELLFLCGNNFSKFT 287 (479)
Q Consensus 270 l~~L~~L~Ls~n~l~~lp 287 (479)
+|.|+.|.|.+|.+..++
T Consensus 398 LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 398 LPCLETLRLTGNPLAGSV 415 (490)
T ss_pred ccHHHHHhhcCCCccccc
Confidence 666666666666655555
No 34
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.57 E-value=2.4e-10 Score=110.91 Aligned_cols=26 Identities=12% Similarity=0.275 Sum_probs=17.2
Q ss_pred CCeeeecCCCCCCCccccCCCCceEE
Q 047943 363 PGISNCLPGSQIPDWFRNQCSGSSIT 388 (479)
Q Consensus 363 ~~~~~~~pg~~iP~wf~~~~~g~s~~ 388 (479)
..+...+|..+|.++|........+.
T Consensus 445 ~~~~~~lp~i~v~a~~a~~t~p~~v~ 470 (483)
T KOG4341|consen 445 SRFATHLPNIKVHAYFAPVTPPGFVK 470 (483)
T ss_pred HHHHhhCccceehhhccCCCCccccc
Confidence 44556678888888888766444443
No 35
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.57 E-value=1.2e-08 Score=97.25 Aligned_cols=242 Identities=18% Similarity=0.185 Sum_probs=149.4
Q ss_pred CCCCceEEECCCCCCc-----ccccccCCCCCCcEEEccCCC---CCCCCC--------CCCCCCCCcEEeecCCCCCCC
Q 047943 36 EPENLLELNLPYSKIE-----TIWEVKKEAPKLKYINLHNSQ---YLTGMP--------DLSETPNLERLNILNCTNLAY 99 (479)
Q Consensus 36 ~~~~L~~L~L~~s~i~-----~l~~~~~~l~~L~~L~Ls~~~---~l~~~p--------~l~~l~~L~~L~L~~c~~l~~ 99 (479)
....++.++|++|.+- .+.+.+.+.++|+..++|+-. ...++| .+-+++.|++|+|++|..-..
T Consensus 28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~ 107 (382)
T KOG1909|consen 28 PMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPK 107 (382)
T ss_pred ccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCcc
Confidence 5677888999988875 355667778888888888732 112233 245678899999998766554
Q ss_pred CCcccc-ccCCccccceeeccCCCceecCcc-ccCCCCCCEEec-cCCCCCCCCCEEecCCCCCC----Cccchhhhccc
Q 047943 100 IPSCIH-NFNNLRSVIGLCLRNTAIEEVPSS-IESLTKLEKLDL-SYCTRLKGLCKLDLGYCSKF----ECFPEIIEKME 172 (479)
Q Consensus 100 ~p~~l~-~l~~L~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L-~~c~~L~~L~~L~L~~c~~l----~~~p~~~~~l~ 172 (479)
.++.+. -+++...|++|+|.+|++...-.. ++. .|..|.. ..-.+-+.|+++..+.|..- ..+...+...+
T Consensus 108 g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~--al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~ 185 (382)
T KOG1909|consen 108 GIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR--ALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHP 185 (382)
T ss_pred chHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH--HHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhcc
Confidence 444443 234455577788888877532211 111 0111110 01123345666666654332 22445677778
Q ss_pred cCCeeeccCccccc--cCcccccccCCCCCCCCCCCCCCCCeeecCCCccccccCCCceeecCCCCC-----CCCCcccC
Q 047943 173 RLRSVDLQSTEVEE--LPSSMENLEGLKDLPDSLPNLKSLQFLNVERLFSIADLDKLEDLSISGRRG-----LILPPLLS 245 (479)
Q Consensus 173 ~L~~L~L~~~~i~~--lp~~i~~l~~L~~lp~~l~~l~~L~~L~l~~l~~l~~l~~L~~L~l~~~~~-----~~lp~~~~ 245 (479)
.|+.+.+..|.|.. +-.. ...+..+++|+.|++.+|.. ..+...+.
T Consensus 186 ~leevr~~qN~I~~eG~~al---------------------------~eal~~~~~LevLdl~DNtft~egs~~LakaL~ 238 (382)
T KOG1909|consen 186 TLEEVRLSQNGIRPEGVTAL---------------------------AEALEHCPHLEVLDLRDNTFTLEGSVALAKALS 238 (382)
T ss_pred ccceEEEecccccCchhHHH---------------------------HHHHHhCCcceeeecccchhhhHHHHHHHHHhc
Confidence 88888888887763 2000 02244556677777777762 23444455
Q ss_pred CCCCCCEEEcCCCCCcc-----CCccC-CCCCCCCEEeCCCCcCC-----ccChhhhcCCCchhHHHHHhhhhhh
Q 047943 246 GLSSLTKLVLTCCDVIE-----IPQDI-GCLSSLELLFLCGNNFS-----KFTCKYQSTFTAEKTLLELLQYATV 309 (479)
Q Consensus 246 ~l~~L~~L~L~~~~l~~-----lp~~l-~~l~~L~~L~Ls~n~l~-----~lp~~~i~~l~~L~~L~~~L~~n~~ 309 (479)
.+++|+.|++++|.+.. +...+ ...|+|+.|.+.+|.++ .+. ..+...+.|+.| +|++|.+
T Consensus 239 s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la-~~~~ek~dL~kL--nLngN~l 310 (382)
T KOG1909|consen 239 SWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALA-ACMAEKPDLEKL--NLNGNRL 310 (382)
T ss_pred ccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHH-HHHhcchhhHHh--cCCcccc
Confidence 67889999999998875 22222 45789999999999977 233 455668889999 8888865
No 36
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.54 E-value=1.5e-08 Score=94.59 Aligned_cols=122 Identities=20% Similarity=0.188 Sum_probs=89.3
Q ss_pred cCCeeeccCccccccCcccccccCCCCCCCCCCCCCCCCeeecCC-----CccccccCCCceeecCCCCCCCCCcccCCC
Q 047943 173 RLRSVDLQSTEVEELPSSMENLEGLKDLPDSLPNLKSLQFLNVER-----LFSIADLDKLEDLSISGRRGLILPPLLSGL 247 (479)
Q Consensus 173 ~L~~L~L~~~~i~~lp~~i~~l~~L~~lp~~l~~l~~L~~L~l~~-----l~~l~~l~~L~~L~l~~~~~~~lp~~~~~l 247 (479)
.|+++++++|.|+++..++.- .+.++.|+++. ...++.+++|+.|++++|....+-.+-..+
T Consensus 285 ~LtelDLS~N~I~~iDESvKL-------------~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KL 351 (490)
T KOG1259|consen 285 ELTELDLSGNLITQIDESVKL-------------APKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKL 351 (490)
T ss_pred hhhhccccccchhhhhhhhhh-------------ccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhh
Confidence 567777777777766554433 23455566655 245667788889999988866665555567
Q ss_pred CCCCEEEcCCCCCccCCccCCCCCCCCEEeCCCCcCCccCh-hhhcCCCchhHHHHHhhhhhhh
Q 047943 248 SSLTKLVLTCCDVIEIPQDIGCLSSLELLFLCGNNFSKFTC-KYQSTFTAEKTLLELLQYATVI 310 (479)
Q Consensus 248 ~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~-~~i~~l~~L~~L~~~L~~n~~~ 310 (479)
-+.++|.|++|.+.++. .++.+.+|..||+++|++..+.. ..|++++.|+.+ .|.+|.+.
T Consensus 352 GNIKtL~La~N~iE~LS-GL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l--~L~~NPl~ 412 (490)
T KOG1259|consen 352 GNIKTLKLAQNKIETLS-GLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETL--RLTGNPLA 412 (490)
T ss_pred cCEeeeehhhhhHhhhh-hhHhhhhheeccccccchhhHHHhcccccccHHHHH--hhcCCCcc
Confidence 78999999999877654 36778899999999999875441 378999999999 88888763
No 37
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.38 E-value=6.3e-08 Score=99.35 Aligned_cols=215 Identities=24% Similarity=0.281 Sum_probs=110.8
Q ss_pred CCCceEEECCCCCCcccccccCCCCCCcEEEccCCCCCCCCCC-CCCCCCCcEEeecCCCCCCCCCccccccCCccccce
Q 047943 37 PENLLELNLPYSKIETIWEVKKEAPKLKYINLHNSQYLTGMPD-LSETPNLERLNILNCTNLAYIPSCIHNFNNLRSVIG 115 (479)
Q Consensus 37 ~~~L~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c~~l~~~p~~l~~l~~L~~L~~ 115 (479)
+..+..+.++.+.+.++-..+..+++|..|++.++. +..+.. +..+++|++|++++|... .+..+..+..|+.
T Consensus 71 l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~-i~~i~~~l~~~~~L~~L~ls~N~I~-----~i~~l~~l~~L~~ 144 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNK-IEKIENLLSSLVNLQVLDLSFNKIT-----KLEGLSTLTLLKE 144 (414)
T ss_pred hHhHHhhccchhhhhhhhcccccccceeeeeccccc-hhhcccchhhhhcchheeccccccc-----cccchhhccchhh
Confidence 444555555555555543445556666666666653 334444 566666666666664332 2333344444555
Q ss_pred eeccCCCceecCccccCCCCCCEEeccCCCCCCCCCEEecCCCCCCCccc-hhhhccccCCeeeccCccccccCcccccc
Q 047943 116 LCLRNTAIEEVPSSIESLTKLEKLDLSYCTRLKGLCKLDLGYCSKFECFP-EIIEKMERLRSVDLQSTEVEELPSSMENL 194 (479)
Q Consensus 116 L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~L~~L~~L~L~~c~~l~~~p-~~~~~l~~L~~L~L~~~~i~~lp~~i~~l 194 (479)
|++.+|.|..+. .+.. ++.|+.+++++|.....-+ . ...+.+++.+++.+|.+..+...
T Consensus 145 L~l~~N~i~~~~-~~~~--------------l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~~~---- 204 (414)
T KOG0531|consen 145 LNLSGNLISDIS-GLES--------------LKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIEGL---- 204 (414)
T ss_pred heeccCcchhcc-CCcc--------------chhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcccch----
Confidence 666666655443 1222 3333444444433322111 1 35666777777777776654210
Q ss_pred cCCCCCCCCCCCCCCCCeeecCCCccccccCCCceeecCCCCCCCCCcccCCCC--CCCEEEcCCCCCccCCccCCCCCC
Q 047943 195 EGLKDLPDSLPNLKSLQFLNVERLFSIADLDKLEDLSISGRRGLILPPLLSGLS--SLTKLVLTCCDVIEIPQDIGCLSS 272 (479)
Q Consensus 195 ~~L~~lp~~l~~l~~L~~L~l~~l~~l~~l~~L~~L~l~~~~~~~lp~~~~~l~--~L~~L~L~~~~l~~lp~~l~~l~~ 272 (479)
..+..+..+++..+....+-. +..+. .|+.+.++++.+..++..+..+..
T Consensus 205 ---------------------------~~~~~l~~~~l~~n~i~~~~~-l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~ 256 (414)
T KOG0531|consen 205 ---------------------------DLLKKLVLLSLLDNKISKLEG-LNELVMLHLRELYLSGNRISRSPEGLENLKN 256 (414)
T ss_pred ---------------------------HHHHHHHHhhcccccceeccC-cccchhHHHHHHhcccCcccccccccccccc
Confidence 011111111222233211111 11122 377777788777776666677778
Q ss_pred CCEEeCCCCcCCccChhhhcCCCchhHHHHHhhhhhh
Q 047943 273 LELLFLCGNNFSKFTCKYQSTFTAEKTLLELLQYATV 309 (479)
Q Consensus 273 L~~L~Ls~n~l~~lp~~~i~~l~~L~~L~~~L~~n~~ 309 (479)
++.|++..|.+..+. .+.....+..+ ....+.+
T Consensus 257 l~~l~~~~n~~~~~~--~~~~~~~~~~~--~~~~~~~ 289 (414)
T KOG0531|consen 257 LPVLDLSSNRISNLE--GLERLPKLSEL--WLNDNKL 289 (414)
T ss_pred ccccchhhccccccc--cccccchHHHh--ccCcchh
Confidence 888888888776554 45555566666 5555544
No 38
>PLN03150 hypothetical protein; Provisional
Probab=98.28 E-value=1.5e-06 Score=93.58 Aligned_cols=81 Identities=27% Similarity=0.377 Sum_probs=60.8
Q ss_pred cCCCceeecCCCCC-CCCCcccCCCCCCCEEEcCCCCCcc-CCccCCCCCCCCEEeCCCCcCC-ccChhhhcCC-CchhH
Q 047943 224 LDKLEDLSISGRRG-LILPPLLSGLSSLTKLVLTCCDVIE-IPQDIGCLSSLELLFLCGNNFS-KFTCKYQSTF-TAEKT 299 (479)
Q Consensus 224 l~~L~~L~l~~~~~-~~lp~~~~~l~~L~~L~L~~~~l~~-lp~~l~~l~~L~~L~Ls~n~l~-~lp~~~i~~l-~~L~~ 299 (479)
+++|+.|++++|.. ..+|..+..+++|+.|+|++|++.+ +|..++.+++|+.|+|++|.++ .+| ..+..+ .++..
T Consensus 441 L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP-~~l~~~~~~~~~ 519 (623)
T PLN03150 441 LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVP-AALGGRLLHRAS 519 (623)
T ss_pred CCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCC-hHHhhccccCce
Confidence 34556666666774 4778778889999999999999986 8999999999999999999977 788 666543 34455
Q ss_pred HHHHhhhh
Q 047943 300 LLELLQYA 307 (479)
Q Consensus 300 L~~~L~~n 307 (479)
+ ++.+|
T Consensus 520 l--~~~~N 525 (623)
T PLN03150 520 F--NFTDN 525 (623)
T ss_pred E--EecCC
Confidence 5 44444
No 39
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.20 E-value=2.6e-08 Score=97.02 Aligned_cols=61 Identities=20% Similarity=0.347 Sum_probs=41.0
Q ss_pred CCceEEECCCCCC---cccccccCCCCCCcEEEccCCCCCCCCC--CC-CCCCCCcEEeecCCCCCC
Q 047943 38 ENLLELNLPYSKI---ETIWEVKKEAPKLKYINLHNSQYLTGMP--DL-SETPNLERLNILNCTNLA 98 (479)
Q Consensus 38 ~~L~~L~L~~s~i---~~l~~~~~~l~~L~~L~Ls~~~~l~~~p--~l-~~l~~L~~L~L~~c~~l~ 98 (479)
-.|++|.+.++.- ..+.....++++++.|++.+|.++++.. .+ ..+++|++|++..|..++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT 204 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSIT 204 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhH
Confidence 4567777777642 2344555678888888888887666643 23 347788888888877664
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.18 E-value=3.6e-07 Score=66.62 Aligned_cols=57 Identities=32% Similarity=0.437 Sum_probs=29.2
Q ss_pred CCceeecCCCCCCCCC-cccCCCCCCCEEEcCCCCCccC-CccCCCCCCCCEEeCCCCc
Q 047943 226 KLEDLSISGRRGLILP-PLLSGLSSLTKLVLTCCDVIEI-PQDIGCLSSLELLFLCGNN 282 (479)
Q Consensus 226 ~L~~L~l~~~~~~~lp-~~~~~l~~L~~L~L~~~~l~~l-p~~l~~l~~L~~L~Ls~n~ 282 (479)
+|++|++++|....+| ..+.++++|++|++++|.+..+ |..+..+++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 4555555555544443 2444555555555555555552 2344555555555555554
No 41
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.17 E-value=3.7e-07 Score=93.69 Aligned_cols=120 Identities=24% Similarity=0.259 Sum_probs=87.8
Q ss_pred ceEEEecCCCCCCCCC-CCCCCCceEEECCCCCCcccccccCCCCCCcEEEccCCCCCCCCCCCCCCCCCcEEeecCCCC
Q 047943 18 LRYLHWYEYPLKTLPS-NFEPENLLELNLPYSKIETIWEVKKEAPKLKYINLHNSQYLTGMPDLSETPNLERLNILNCTN 96 (479)
Q Consensus 18 Lr~L~~~~~~l~~lp~-~~~~~~L~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c~~ 96 (479)
+..+.+..+.++..-. .-.+++|+.|++..++|+++...+..+++|+.|++++|. ++.+..+..++.|+.|++.+|..
T Consensus 74 l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~-I~~i~~l~~l~~L~~L~l~~N~i 152 (414)
T KOG0531|consen 74 LKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNK-ITKLEGLSTLTLLKELNLSGNLI 152 (414)
T ss_pred HHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheeccccc-cccccchhhccchhhheeccCcc
Confidence 3334444555554222 236789999999999999886658889999999999974 66777888888899999999754
Q ss_pred CCCCCccccccCCccccceeeccCCCceecCcc-ccCCCCCCEEeccC
Q 047943 97 LAYIPSCIHNFNNLRSVIGLCLRNTAIEEVPSS-IESLTKLEKLDLSY 143 (479)
Q Consensus 97 l~~~p~~l~~l~~L~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~ 143 (479)
- .+.++..+..|+.+++++|.+..+... ...+.+++.+.+.+
T Consensus 153 ~-----~~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~ 195 (414)
T KOG0531|consen 153 S-----DISGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGG 195 (414)
T ss_pred h-----hccCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccC
Confidence 3 345566678888899999999877654 35556666665554
No 42
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.17 E-value=1.2e-06 Score=63.82 Aligned_cols=60 Identities=27% Similarity=0.301 Sum_probs=54.0
Q ss_pred CCCCEEEcCCCCCccCC-ccCCCCCCCCEEeCCCCcCCccChhhhcCCCchhHHHHHhhhhhh
Q 047943 248 SSLTKLVLTCCDVIEIP-QDIGCLSSLELLFLCGNNFSKFTCKYQSTFTAEKTLLELLQYATV 309 (479)
Q Consensus 248 ~~L~~L~L~~~~l~~lp-~~l~~l~~L~~L~Ls~n~l~~lp~~~i~~l~~L~~L~~~L~~n~~ 309 (479)
++|++|++++|++.++| ..+..+++|++|++++|.++.++...+..+++|++| ++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L--~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYL--DLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEE--EETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEE--eCcCCcC
Confidence 57999999999999976 577899999999999999999986788999999999 9998864
No 43
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.12 E-value=6.6e-06 Score=82.20 Aligned_cols=124 Identities=27% Similarity=0.417 Sum_probs=69.9
Q ss_pred CCCceEEECCCCCCcccccccCCCCCCcEEEccCCCCCCCCCCCCCCCCCcEEeecCCCCCCCCCccccccCCcccccee
Q 047943 37 PENLLELNLPYSKIETIWEVKKEAPKLKYINLHNSQYLTGMPDLSETPNLERLNILNCTNLAYIPSCIHNFNNLRSVIGL 116 (479)
Q Consensus 37 ~~~L~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c~~l~~~p~~l~~l~~L~~L~~L 116 (479)
+.++..|++++|.++.+| .-..+|+.|++++|..++.+|+.- .++|++|++.+|..+..+|.. |+.|
T Consensus 51 ~~~l~~L~Is~c~L~sLP---~LP~sLtsL~Lsnc~nLtsLP~~L-P~nLe~L~Ls~Cs~L~sLP~s---------Le~L 117 (426)
T PRK15386 51 ARASGRLYIKDCDIESLP---VLPNELTEITIENCNNLTTLPGSI-PEGLEKLTVCHCPEISGLPES---------VRSL 117 (426)
T ss_pred hcCCCEEEeCCCCCcccC---CCCCCCcEEEccCCCCcccCCchh-hhhhhheEccCcccccccccc---------cceE
Confidence 566667777777666666 223457777777776666666421 246777777777666555543 3334
Q ss_pred eccCCC---ceecCccccCCCCCCEEeccCCC---------CC-CCCCEEecCCCCCCCccchhhhccccCCeeeccCc
Q 047943 117 CLRNTA---IEEVPSSIESLTKLEKLDLSYCT---------RL-KGLCKLDLGYCSKFECFPEIIEKMERLRSVDLQST 182 (479)
Q Consensus 117 ~L~~~~---i~~lp~~i~~l~~L~~L~L~~c~---------~L-~~L~~L~L~~c~~l~~~p~~~~~l~~L~~L~L~~~ 182 (479)
++..+. +..+|++ |+.|.+.++. .+ .+|++|++++|.... +|..+. .+|+.|+++.+
T Consensus 118 ~L~~n~~~~L~~LPss------Lk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~-LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 118 EIKGSATDSIKNVPNG------LTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNII-LPEKLP--ESLQSITLHIE 187 (426)
T ss_pred EeCCCCCcccccCcch------HhheeccccccccccccccccCCcccEEEecCCCccc-Cccccc--ccCcEEEeccc
Confidence 444433 3445544 3344432211 12 467788888777553 233222 37888888765
No 44
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.11 E-value=1.2e-05 Score=80.48 Aligned_cols=28 Identities=29% Similarity=0.602 Sum_probs=13.8
Q ss_pred CCEEecCCCCCCCccchhhhccccCCeeeccCcc
Q 047943 150 LCKLDLGYCSKFECFPEIIEKMERLRSVDLQSTE 183 (479)
Q Consensus 150 L~~L~L~~c~~l~~~p~~~~~l~~L~~L~L~~~~ 183 (479)
|++|.+++|..+..+|. +|+.|++.++.
T Consensus 96 Le~L~Ls~Cs~L~sLP~------sLe~L~L~~n~ 123 (426)
T PRK15386 96 LEKLTVCHCPEISGLPE------SVRSLEIKGSA 123 (426)
T ss_pred hhheEccCccccccccc------ccceEEeCCCC
Confidence 34455555544444554 35555555443
No 45
>PLN03150 hypothetical protein; Provisional
Probab=98.10 E-value=6.7e-06 Score=88.57 Aligned_cols=63 Identities=22% Similarity=0.229 Sum_probs=28.9
Q ss_pred ceEEECCCCCCc-ccccccCCCCCCcEEEccCCCCCCCCC-CCCCCCCCcEEeecCCCCCCCCCc
Q 047943 40 LLELNLPYSKIE-TIWEVKKEAPKLKYINLHNSQYLTGMP-DLSETPNLERLNILNCTNLAYIPS 102 (479)
Q Consensus 40 L~~L~L~~s~i~-~l~~~~~~l~~L~~L~Ls~~~~l~~~p-~l~~l~~L~~L~L~~c~~l~~~p~ 102 (479)
++.|+|+++.+. .+|..+..+++|+.|+|++|.....+| .++.+++|+.|+|++|...+.+|.
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~ 484 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPE 484 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCch
Confidence 444455544444 244444445555555555444433444 344444454444444443333333
No 46
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.10 E-value=7.3e-08 Score=90.04 Aligned_cols=59 Identities=27% Similarity=0.421 Sum_probs=35.8
Q ss_pred CceEEECCCCCCc--ccccccCCCCCCcEEEccCCCCCCCCC-CCCCCCCCcEEeecCCCCC
Q 047943 39 NLLELNLPYSKIE--TIWEVKKEAPKLKYINLHNSQYLTGMP-DLSETPNLERLNILNCTNL 97 (479)
Q Consensus 39 ~L~~L~L~~s~i~--~l~~~~~~l~~L~~L~Ls~~~~l~~~p-~l~~l~~L~~L~L~~c~~l 97 (479)
.|+.|+|+.+.|+ ++-..+..+.+||.|.|.+.+.-..+- .+.+-.+|++|+|+.|..+
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~ 247 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGF 247 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeecccccccc
Confidence 3677777777665 344445667777777777654332222 3556667777777776655
No 47
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=3e-07 Score=86.02 Aligned_cols=73 Identities=23% Similarity=0.309 Sum_probs=44.7
Q ss_pred cceeeccCCCce--ecCccccCCCCCCEEeccCCC----------CCCCCCEEecCCCCCCCccc--hhhhccccCCeee
Q 047943 113 VIGLCLRNTAIE--EVPSSIESLTKLEKLDLSYCT----------RLKGLCKLDLGYCSKFECFP--EIIEKMERLRSVD 178 (479)
Q Consensus 113 L~~L~L~~~~i~--~lp~~i~~l~~L~~L~L~~c~----------~L~~L~~L~L~~c~~l~~~p--~~~~~l~~L~~L~ 178 (479)
|+.|||+...|+ .+...+..+.+|+.|.+.+.. +-+.|+.|++++|+.+.+.. -.+.++..|.+|+
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LN 266 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELN 266 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcC
Confidence 566777776665 455556666777777776632 33456667777776665433 3456666777777
Q ss_pred ccCcccc
Q 047943 179 LQSTEVE 185 (479)
Q Consensus 179 L~~~~i~ 185 (479)
++.+...
T Consensus 267 lsWc~l~ 273 (419)
T KOG2120|consen 267 LSWCFLF 273 (419)
T ss_pred chHhhcc
Confidence 7666443
No 48
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.05 E-value=9.9e-08 Score=98.71 Aligned_cols=115 Identities=21% Similarity=0.168 Sum_probs=61.8
Q ss_pred CCCCccchhhhccccCCeeeccCccccccCcccccccCCCCCCCCCCCCCCCCeeecCCCccccccCCCceeecCCCCCC
Q 047943 159 SKFECFPEIIEKMERLRSVDLQSTEVEELPSSMENLEGLKDLPDSLPNLKSLQFLNVERLFSIADLDKLEDLSISGRRGL 238 (479)
Q Consensus 159 ~~l~~~p~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~lp~~l~~l~~L~~L~l~~l~~l~~l~~L~~L~l~~~~~~ 238 (479)
+.+..+.+.+.-++.|+.|+|+.|++..+. .+..+++|++||++.|...
T Consensus 174 N~L~~mD~SLqll~ale~LnLshNk~~~v~-------------------------------~Lr~l~~LkhLDlsyN~L~ 222 (1096)
T KOG1859|consen 174 NRLVLMDESLQLLPALESLNLSHNKFTKVD-------------------------------NLRRLPKLKHLDLSYNCLR 222 (1096)
T ss_pred hhHHhHHHHHHHHHHhhhhccchhhhhhhH-------------------------------HHHhcccccccccccchhc
Confidence 334445555666666777777777665532 1223344555555555554
Q ss_pred CCCcccCCCCCCCEEEcCCCCCccCCccCCCCCCCCEEeCCCCcCC---ccChhhhcCCCchhHHHHHhhhhhh
Q 047943 239 ILPPLLSGLSSLTKLVLTCCDVIEIPQDIGCLSSLELLFLCGNNFS---KFTCKYQSTFTAEKTLLELLQYATV 309 (479)
Q Consensus 239 ~lp~~~~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~---~lp~~~i~~l~~L~~L~~~L~~n~~ 309 (479)
.+|..-..-..|+.|.++||.++++-. +.++.+|+.||++.|-+. .+. .+..+..|+.| .|.+|.+
T Consensus 223 ~vp~l~~~gc~L~~L~lrnN~l~tL~g-ie~LksL~~LDlsyNll~~hseL~--pLwsLs~L~~L--~LeGNPl 291 (1096)
T KOG1859|consen 223 HVPQLSMVGCKLQLLNLRNNALTTLRG-IENLKSLYGLDLSYNLLSEHSELE--PLWSLSSLIVL--WLEGNPL 291 (1096)
T ss_pred cccccchhhhhheeeeecccHHHhhhh-HHhhhhhhccchhHhhhhcchhhh--HHHHHHHHHHH--hhcCCcc
Confidence 454422111236666666666655332 445666666666666543 222 34555566666 6666655
No 49
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.97 E-value=7.1e-06 Score=55.26 Aligned_cols=40 Identities=28% Similarity=0.464 Sum_probs=33.3
Q ss_pred CCCCEEEcCCCCCccCCccCCCCCCCCEEeCCCCcCCccC
Q 047943 248 SSLTKLVLTCCDVIEIPQDIGCLSSLELLFLCGNNFSKFT 287 (479)
Q Consensus 248 ~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp 287 (479)
++|++|++++|++.++|..++.+++|+.|++++|++++++
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 4788999999999998888889999999999999988776
No 50
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.87 E-value=3.9e-06 Score=80.41 Aligned_cols=139 Identities=18% Similarity=0.087 Sum_probs=69.5
Q ss_pred CCCEEecCCCCCCCccc----hhhhccccCCeeeccCcccccc-----CcccccccCCCCCCCCCCCCCCCCeeecCCCc
Q 047943 149 GLCKLDLGYCSKFECFP----EIIEKMERLRSVDLQSTEVEEL-----PSSMENLEGLKDLPDSLPNLKSLQFLNVERLF 219 (479)
Q Consensus 149 ~L~~L~L~~c~~l~~~p----~~~~~l~~L~~L~L~~~~i~~l-----p~~i~~l~~L~~lp~~l~~l~~L~~L~l~~l~ 219 (479)
+|++++||.|..-...+ +-+..+..|++|+|.+|++... ...+..|... .
T Consensus 93 ~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~---------------------k 151 (382)
T KOG1909|consen 93 KLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVN---------------------K 151 (382)
T ss_pred ceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHH---------------------h
Confidence 44555555555443333 3455567788888887776532 1111111111 1
Q ss_pred cccccCCCceeecCCCCCCCCC-----cccCCCCCCCEEEcCCCCCcc-----CCccCCCCCCCCEEeCCCCcCC-----
Q 047943 220 SIADLDKLEDLSISGRRGLILP-----PLLSGLSSLTKLVLTCCDVIE-----IPQDIGCLSSLELLFLCGNNFS----- 284 (479)
Q Consensus 220 ~l~~l~~L~~L~l~~~~~~~lp-----~~~~~l~~L~~L~L~~~~l~~-----lp~~l~~l~~L~~L~Ls~n~l~----- 284 (479)
-.+.-++|+.+..+.|+....+ ..+...+.|+.+.+..|.+.. +...+..+++|+.|||..|-|+
T Consensus 152 k~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~ 231 (382)
T KOG1909|consen 152 KAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSV 231 (382)
T ss_pred ccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHH
Confidence 1223345555555555532222 223444566666666665543 2344556666666666666655
Q ss_pred ccChhhhcCCCchhHHHHHhhhhhhhh
Q 047943 285 KFTCKYQSTFTAEKTLLELLQYATVIT 311 (479)
Q Consensus 285 ~lp~~~i~~l~~L~~L~~~L~~n~~~~ 311 (479)
.+. ..+..++.|+.| ++++|.+-+
T Consensus 232 ~La-kaL~s~~~L~El--~l~dcll~~ 255 (382)
T KOG1909|consen 232 ALA-KALSSWPHLREL--NLGDCLLEN 255 (382)
T ss_pred HHH-HHhcccchheee--ccccccccc
Confidence 222 334455556666 555554433
No 51
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.73 E-value=9.2e-06 Score=76.27 Aligned_cols=61 Identities=13% Similarity=0.036 Sum_probs=37.6
Q ss_pred cCCCceeecCCCCCCCC--CcccCCCCCCCEEEcCCCCCcc--CCccCCCCCCCCEEeCCCCcCC
Q 047943 224 LDKLEDLSISGRRGLIL--PPLLSGLSSLTKLVLTCCDVIE--IPQDIGCLSSLELLFLCGNNFS 284 (479)
Q Consensus 224 l~~L~~L~l~~~~~~~l--p~~~~~l~~L~~L~L~~~~l~~--lp~~l~~l~~L~~L~Ls~n~l~ 284 (479)
++++..+.+..|..... -..+..++.+.-|+|+.+++.+ --+.+..+++|..|.++++++.
T Consensus 198 Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~ 262 (418)
T KOG2982|consen 198 FPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLS 262 (418)
T ss_pred cccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence 45555566666653222 2234455666677777777766 3455677888888888887743
No 52
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.70 E-value=1.4e-06 Score=90.35 Aligned_cols=88 Identities=24% Similarity=0.175 Sum_probs=72.3
Q ss_pred ccccccCCCceeecCCCCCCCCCcccCCCCCCCEEEcCCCCCccCCccCCCCCCCCEEeCCCCcCCccChhhhcCCCchh
Q 047943 219 FSIADLDKLEDLSISGRRGLILPPLLSGLSSLTKLVLTCCDVIEIPQDIGCLSSLELLFLCGNNFSKFTCKYQSTFTAEK 298 (479)
Q Consensus 219 ~~l~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~~i~~l~~L~ 298 (479)
.++.-++.|+.|++++|+..... .+..++.|+.|||++|.+..+|..-..--.|+.|.+++|.++++- .+.++.+|+
T Consensus 181 ~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l~tL~--gie~LksL~ 257 (1096)
T KOG1859|consen 181 ESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNALTTLR--GIENLKSLY 257 (1096)
T ss_pred HHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhhheeeeecccHHHhhh--hHHhhhhhh
Confidence 34556788899999999866665 477899999999999999987764333334999999999999986 899999999
Q ss_pred HHHHHhhhhhhhh
Q 047943 299 TLLELLQYATVIT 311 (479)
Q Consensus 299 ~L~~~L~~n~~~~ 311 (479)
.| |+++|-+..
T Consensus 258 ~L--DlsyNll~~ 268 (1096)
T KOG1859|consen 258 GL--DLSYNLLSE 268 (1096)
T ss_pred cc--chhHhhhhc
Confidence 99 999997653
No 53
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.55 E-value=6.7e-05 Score=50.51 Aligned_cols=35 Identities=31% Similarity=0.430 Sum_probs=22.8
Q ss_pred CCceEEECCCCCCcccccccCCCCCCcEEEccCCC
Q 047943 38 ENLLELNLPYSKIETIWEVKKEAPKLKYINLHNSQ 72 (479)
Q Consensus 38 ~~L~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~ 72 (479)
++|++|++++|+|+.++..++++++|+.|++++|+
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNP 35 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCC
Confidence 35677777777777776666777777777777763
No 54
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.42 E-value=4.7e-05 Score=82.22 Aligned_cols=124 Identities=21% Similarity=0.253 Sum_probs=86.4
Q ss_pred CCCCcEEEccCCCCCCCC-C-CC-CCCCCCcEEeecCCCCCCCCCccccccCCccccceeeccCCCceecCccccCCCCC
Q 047943 60 APKLKYINLHNSQYLTGM-P-DL-SETPNLERLNILNCTNLAYIPSCIHNFNNLRSVIGLCLRNTAIEEVPSSIESLTKL 136 (479)
Q Consensus 60 l~~L~~L~Ls~~~~l~~~-p-~l-~~l~~L~~L~L~~c~~l~~~p~~l~~l~~L~~L~~L~L~~~~i~~lp~~i~~l~~L 136 (479)
-.+|+.||+++...+..- | .+ ..+|.|+.|.+.+= .+ ...+...-|.++++|..||+++++++.+ ..+++|++|
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~-~~-~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknL 197 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGR-QF-DNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNL 197 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCc-ee-cchhHHHHhhccCccceeecCCCCccCc-HHHhccccH
Confidence 468889999886554332 2 23 34789999998872 22 1222345577778888899999998887 678899999
Q ss_pred CEEeccCCC-----------CCCCCCEEecCCCCCCCcc------chhhhccccCCeeeccCccccc
Q 047943 137 EKLDLSYCT-----------RLKGLCKLDLGYCSKFECF------PEIIEKMERLRSVDLQSTEVEE 186 (479)
Q Consensus 137 ~~L~L~~c~-----------~L~~L~~L~L~~c~~l~~~------p~~~~~l~~L~~L~L~~~~i~~ 186 (479)
+.|.+.+.. +|++|+.||+|.-.....- -+.-..+++|+.||.++|.+.+
T Consensus 198 q~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 198 QVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred HHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence 998887642 6888899998875544321 1223347889999999887765
No 55
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.23 E-value=0.00011 Score=79.54 Aligned_cols=85 Identities=29% Similarity=0.382 Sum_probs=47.2
Q ss_pred cchhhhccccCCeeeccCccccccCcccccccCCCCCCCCCCCCCCCCeeecCC--------CccccccCCCceeecCCC
Q 047943 164 FPEIIEKMERLRSVDLQSTEVEELPSSMENLEGLKDLPDSLPNLKSLQFLNVER--------LFSIADLDKLEDLSISGR 235 (479)
Q Consensus 164 ~p~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~lp~~l~~l~~L~~L~l~~--------l~~l~~l~~L~~L~l~~~ 235 (479)
+-....+.++|..||+++++++.+ ..++ ++++|+.|.+.+ +..+.++++|+.||++.-
T Consensus 165 F~~lc~sFpNL~sLDIS~TnI~nl-~GIS-------------~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~ 230 (699)
T KOG3665|consen 165 FSQLCASFPNLRSLDISGTNISNL-SGIS-------------RLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRD 230 (699)
T ss_pred HHHHhhccCccceeecCCCCccCc-HHHh-------------ccccHHHHhccCCCCCchhhHHHHhcccCCCeeecccc
Confidence 445556677788888888877765 3333 334444444443 234555666677776655
Q ss_pred CCCCCCcc-------cCCCCCCCEEEcCCCCCcc
Q 047943 236 RGLILPPL-------LSGLSSLTKLVLTCCDVIE 262 (479)
Q Consensus 236 ~~~~lp~~-------~~~l~~L~~L~L~~~~l~~ 262 (479)
....-+.. -..+|.|+.||.+++.+.+
T Consensus 231 ~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 231 KNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred ccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence 43222211 1235667777777665554
No 56
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.00 E-value=8.4e-05 Score=62.22 Aligned_cols=82 Identities=16% Similarity=0.170 Sum_probs=68.4
Q ss_pred cCCCceeecCCCCCCCCCcccC-CCCCCCEEEcCCCCCccCCccCCCCCCCCEEeCCCCcCCccChhhhcCCCchhHHHH
Q 047943 224 LDKLEDLSISGRRGLILPPLLS-GLSSLTKLVLTCCDVIEIPQDIGCLSSLELLFLCGNNFSKFTCKYQSTFTAEKTLLE 302 (479)
Q Consensus 224 l~~L~~L~l~~~~~~~lp~~~~-~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~~i~~l~~L~~L~~ 302 (479)
..+|+..++++|....+|..+. .++.++.|++++|.+.++|..+..++.|+.|+++.|.+...| ..+..+.+|-.|
T Consensus 52 ~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p-~vi~~L~~l~~L-- 128 (177)
T KOG4579|consen 52 GYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEP-RVIAPLIKLDML-- 128 (177)
T ss_pred CceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccch-HHHHHHHhHHHh--
Confidence 3456777888899888887664 456899999999999999999999999999999999999999 888888888888
Q ss_pred Hhhhhh
Q 047943 303 LLQYAT 308 (479)
Q Consensus 303 ~L~~n~ 308 (479)
+..+|.
T Consensus 129 ds~~na 134 (177)
T KOG4579|consen 129 DSPENA 134 (177)
T ss_pred cCCCCc
Confidence 554443
No 57
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.91 E-value=0.00028 Score=65.44 Aligned_cols=78 Identities=22% Similarity=0.192 Sum_probs=41.2
Q ss_pred CceEEEecCCCCCC--CCCCC-CCCCceEEECCCCCCcccccccCCCCCCcEEEccCC--CCCCCCC-CCCCCCCCcEEe
Q 047943 17 ELRYLHWYEYPLKT--LPSNF-EPENLLELNLPYSKIETIWEVKKEAPKLKYINLHNS--QYLTGMP-DLSETPNLERLN 90 (479)
Q Consensus 17 ~Lr~L~~~~~~l~~--lp~~~-~~~~L~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~--~~l~~~p-~l~~l~~L~~L~ 90 (479)
.++.+.++.+.... +...+ ...+|+.|.+.+..++.+ ..+-.+++||.|+++.| .....++ -..++|+|++|+
T Consensus 19 ~v~~l~lD~~~s~~g~~~gl~d~~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ 97 (260)
T KOG2739|consen 19 QVDELFLDNARSGAGKLGGLTDEFVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLN 97 (260)
T ss_pred hhhhhhcchhhhcCCCcccccccccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEe
Confidence 44555555443322 33333 455555555555554433 23345667777777776 3333343 234457777777
Q ss_pred ecCCC
Q 047943 91 ILNCT 95 (479)
Q Consensus 91 L~~c~ 95 (479)
+++|.
T Consensus 98 ls~Nk 102 (260)
T KOG2739|consen 98 LSGNK 102 (260)
T ss_pred ecCCc
Confidence 77654
No 58
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.78 E-value=0.00028 Score=65.70 Aligned_cols=243 Identities=16% Similarity=0.144 Sum_probs=120.3
Q ss_pred CCCCceEEECCCCCCc-----ccccccCCCCCCcEEEccCCCCCC---C--------CCCCCCCCCCcEEeecCCCCCCC
Q 047943 36 EPENLLELNLPYSKIE-----TIWEVKKEAPKLKYINLHNSQYLT---G--------MPDLSETPNLERLNILNCTNLAY 99 (479)
Q Consensus 36 ~~~~L~~L~L~~s~i~-----~l~~~~~~l~~L~~L~Ls~~~~l~---~--------~p~l~~l~~L~~L~L~~c~~l~~ 99 (479)
.+..+++++|++|.|. .+.+.+.+-.+|+..++++-..-. + ++.+-+||.|+..+|++|..-..
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 3566777777777664 245556666777777766531110 1 12345677777777777665555
Q ss_pred CCccccc-cCCccccceeeccCCCceecCc-----cccCCCCCCEEeccCCCCCCCCCEEecCCCCCCCccch-----hh
Q 047943 100 IPSCIHN-FNNLRSVIGLCLRNTAIEEVPS-----SIESLTKLEKLDLSYCTRLKGLCKLDLGYCSKFECFPE-----II 168 (479)
Q Consensus 100 ~p~~l~~-l~~L~~L~~L~L~~~~i~~lp~-----~i~~l~~L~~L~L~~c~~L~~L~~L~L~~c~~l~~~p~-----~~ 168 (479)
.|+.++. +++-..|+.|.+++|++..+-. .+..+...+ .-.+-+.|++.....|. +...|. .+
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nK-----Kaa~kp~Le~vicgrNR-lengs~~~~a~~l 181 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNK-----KAADKPKLEVVICGRNR-LENGSKELSAALL 181 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHh-----hhccCCCceEEEeccch-hccCcHHHHHHHH
Confidence 5544432 2233335556666666543321 111111000 01223445555555433 333332 23
Q ss_pred hccccCCeeeccCccccccCcccccccCCCCCCCCCCCCCCCCeeecCCCccccccCCCceeecCCCCC-----CCCCcc
Q 047943 169 EKMERLRSVDLQSTEVEELPSSMENLEGLKDLPDSLPNLKSLQFLNVERLFSIADLDKLEDLSISGRRG-----LILPPL 243 (479)
Q Consensus 169 ~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~lp~~l~~l~~L~~L~l~~l~~l~~l~~L~~L~l~~~~~-----~~lp~~ 243 (479)
..-.+|+.+.+..|+|.. ..+..+-- ..+..+.+|+.|++.+|.. ..+...
T Consensus 182 ~sh~~lk~vki~qNgIrp--egv~~L~~----------------------~gl~y~~~LevLDlqDNtft~~gS~~La~a 237 (388)
T COG5238 182 ESHENLKEVKIQQNGIRP--EGVTMLAF----------------------LGLFYSHSLEVLDLQDNTFTLEGSRYLADA 237 (388)
T ss_pred HhhcCceeEEeeecCcCc--chhHHHHH----------------------HHHHHhCcceeeeccccchhhhhHHHHHHH
Confidence 333578888888887763 11111100 1123344555555555542 122223
Q ss_pred cCCCCCCCEEEcCCCCCcc--CCcc---C--CCCCCCCEEeCCCCcCC-------ccChhhhcCCCchhHHHHHhhhhhh
Q 047943 244 LSGLSSLTKLVLTCCDVIE--IPQD---I--GCLSSLELLFLCGNNFS-------KFTCKYQSTFTAEKTLLELLQYATV 309 (479)
Q Consensus 244 ~~~l~~L~~L~L~~~~l~~--lp~~---l--~~l~~L~~L~Ls~n~l~-------~lp~~~i~~l~~L~~L~~~L~~n~~ 309 (479)
+..++.|++|.+.+|-++. .... + ...|+|..|-..+|.+. .++...-..++-|..| .+++|++
T Consensus 238 l~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~l--e~ngNr~ 315 (388)
T COG5238 238 LCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDL--ERNGNRI 315 (388)
T ss_pred hcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHH--HHccCcc
Confidence 3345667777777776543 1111 1 23566777777776532 2331122356677777 7777765
Q ss_pred h
Q 047943 310 I 310 (479)
Q Consensus 310 ~ 310 (479)
-
T Consensus 316 ~ 316 (388)
T COG5238 316 K 316 (388)
T ss_pred h
Confidence 3
No 59
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.75 E-value=0.0029 Score=56.65 Aligned_cols=76 Identities=20% Similarity=0.286 Sum_probs=41.1
Q ss_pred eEEEecCCCCCCCCCC-CCCCCceEEECCCCCCcccccccCCCCCCcEEEccCCCCCCCCCCCCC-CCCCcEEeecCCC
Q 047943 19 RYLHWYEYPLKTLPSN-FEPENLLELNLPYSKIETIWEVKKEAPKLKYINLHNSQYLTGMPDLSE-TPNLERLNILNCT 95 (479)
Q Consensus 19 r~L~~~~~~l~~lp~~-~~~~~L~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~-l~~L~~L~L~~c~ 95 (479)
|.+++.++.+..+-.. .-..+...++|+.|.+..+ ..+-.++.|.+|.|.+|....--|.+.. +++|..|.|.+|.
T Consensus 22 ~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs 99 (233)
T KOG1644|consen 22 RELDLRGLKIPVIENLGATLDQFDAIDLTDNDLRKL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNS 99 (233)
T ss_pred cccccccccccchhhccccccccceecccccchhhc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcc
Confidence 4555555554333221 1345566666666666655 3445566666666666654443444433 4556666666643
No 60
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.74 E-value=0.00025 Score=66.91 Aligned_cols=76 Identities=21% Similarity=0.213 Sum_probs=56.0
Q ss_pred ceEEEecCCCCCCCCCC--C--CCCCceEEECCCCCCcc---cccccCCCCCCcEEEccCCCCCCCCCCC-CCCCCCcEE
Q 047943 18 LRYLHWYEYPLKTLPSN--F--EPENLLELNLPYSKIET---IWEVKKEAPKLKYINLHNSQYLTGMPDL-SETPNLERL 89 (479)
Q Consensus 18 Lr~L~~~~~~l~~lp~~--~--~~~~L~~L~L~~s~i~~---l~~~~~~l~~L~~L~Ls~~~~l~~~p~l-~~l~~L~~L 89 (479)
+..|.+.++.+.+.-.. | ...++++++|.+|.|.. +.....++|.|++|+|+.|..-..+-.+ ....||+.|
T Consensus 47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~l 126 (418)
T KOG2982|consen 47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVL 126 (418)
T ss_pred hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEE
Confidence 44677778777665442 3 68899999999999873 4444678999999999998765444333 345688888
Q ss_pred eecC
Q 047943 90 NILN 93 (479)
Q Consensus 90 ~L~~ 93 (479)
-|.|
T Consensus 127 VLNg 130 (418)
T KOG2982|consen 127 VLNG 130 (418)
T ss_pred EEcC
Confidence 8887
No 61
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.69 E-value=0.0035 Score=56.18 Aligned_cols=87 Identities=23% Similarity=0.228 Sum_probs=68.7
Q ss_pred ccCCCccCceEEEecCCCCCCCCCCCCCCCceEEECCCCCCcccccccC-CCCCCcEEEccCCCC--CCCCCCCCCCCCC
Q 047943 10 SLEYLPEELRYLHWYEYPLKTLPSNFEPENLLELNLPYSKIETIWEVKK-EAPKLKYINLHNSQY--LTGMPDLSETPNL 86 (479)
Q Consensus 10 ~~~~l~~~Lr~L~~~~~~l~~lp~~~~~~~L~~L~L~~s~i~~l~~~~~-~l~~L~~L~Ls~~~~--l~~~p~l~~l~~L 86 (479)
.+...-+..-.+++++|.+..++..-.++.|.+|.+..|.|..+-..+. -+++|+.|.|.+|.. +.++..+..+|.|
T Consensus 36 nlg~~~d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L 115 (233)
T KOG1644|consen 36 NLGATLDQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKL 115 (233)
T ss_pred hccccccccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCcc
Confidence 3444556778889999999888776699999999999999998876665 468899999999853 3334457788999
Q ss_pred cEEeecCCCC
Q 047943 87 ERLNILNCTN 96 (479)
Q Consensus 87 ~~L~L~~c~~ 96 (479)
++|.+-+|..
T Consensus 116 ~~Ltll~Npv 125 (233)
T KOG1644|consen 116 EYLTLLGNPV 125 (233)
T ss_pred ceeeecCCch
Confidence 9999988653
No 62
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.69 E-value=0.00011 Score=61.44 Aligned_cols=108 Identities=20% Similarity=0.256 Sum_probs=71.1
Q ss_pred CceEEEecCCCCCCCCCCC----CCCCceEEECCCCCCcccccccC-CCCCCcEEEccCCCCCCCCC-CCCCCCCCcEEe
Q 047943 17 ELRYLHWYEYPLKTLPSNF----EPENLLELNLPYSKIETIWEVKK-EAPKLKYINLHNSQYLTGMP-DLSETPNLERLN 90 (479)
Q Consensus 17 ~Lr~L~~~~~~l~~lp~~~----~~~~L~~L~L~~s~i~~l~~~~~-~l~~L~~L~Ls~~~~l~~~p-~l~~l~~L~~L~ 90 (479)
++..++++.|++.+++... ...+|...+|++|.++++|+.+. .++-++.+++++|. +.++| .+..++.|+.|+
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~ne-isdvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNE-ISDVPEELAAMPALRSLN 106 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhh-hhhchHHHhhhHHhhhcc
Confidence 4556677777777666532 55677777788887777765543 45677777877764 45566 577778888888
Q ss_pred ecCCCCCCCCCccccccCCccccceeeccCCCceecCcc
Q 047943 91 ILNCTNLAYIPSCIHNFNNLRSVIGLCLRNTAIEEVPSS 129 (479)
Q Consensus 91 L~~c~~l~~~p~~l~~l~~L~~L~~L~L~~~~i~~lp~~ 129 (479)
++.| .+...|..+..+.+ +-.|+..+|.+.++|-.
T Consensus 107 l~~N-~l~~~p~vi~~L~~---l~~Lds~~na~~eid~d 141 (177)
T KOG4579|consen 107 LRFN-PLNAEPRVIAPLIK---LDMLDSPENARAEIDVD 141 (177)
T ss_pred cccC-ccccchHHHHHHHh---HHHhcCCCCccccCcHH
Confidence 8774 34555665555443 44477777777777644
No 63
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.62 E-value=0.0013 Score=61.37 Aligned_cols=140 Identities=20% Similarity=0.110 Sum_probs=79.8
Q ss_pred CCCCCCEEecCCCCCCCccchh----hhccccCCeeeccCccccccC-----cccccccCCCCCCCCCCCCCCCCeeecC
Q 047943 146 RLKGLCKLDLGYCSKFECFPEI----IEKMERLRSVDLQSTEVEELP-----SSMENLEGLKDLPDSLPNLKSLQFLNVE 216 (479)
Q Consensus 146 ~L~~L~~L~L~~c~~l~~~p~~----~~~l~~L~~L~L~~~~i~~lp-----~~i~~l~~L~~lp~~l~~l~~L~~L~l~ 216 (479)
+++.|++.+|+.|..-..+|+- +..-+.|++|.+++|++.-+. ..+.++...
T Consensus 90 kcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~n------------------- 150 (388)
T COG5238 90 KCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYN------------------- 150 (388)
T ss_pred cCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHH-------------------
Confidence 4455666666666665555543 344567788888877665321 111111111
Q ss_pred CCccccccCCCceeecCCCCCCCCCcc-----cCCCCCCCEEEcCCCCCcc--C----CccCCCCCCCCEEeCCCCcCCc
Q 047943 217 RLFSIADLDKLEDLSISGRRGLILPPL-----LSGLSSLTKLVLTCCDVIE--I----PQDIGCLSSLELLFLCGNNFSK 285 (479)
Q Consensus 217 ~l~~l~~l~~L~~L~l~~~~~~~lp~~-----~~~l~~L~~L~L~~~~l~~--l----p~~l~~l~~L~~L~Ls~n~l~~ 285 (479)
.-..+-|.|+......|+....|.. +..-..|+++.+..|.+.. + -..+..+.+|+.|||..|-|+.
T Consensus 151 --KKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~ 228 (388)
T COG5238 151 --KKAADKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTL 228 (388)
T ss_pred --hhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhh
Confidence 1223456677777777775444431 2223578888888888763 1 2234567899999999998773
Q ss_pred cCh----hhhcCCCchhHHHHHhhhhh
Q 047943 286 FTC----KYQSTFTAEKTLLELLQYAT 308 (479)
Q Consensus 286 lp~----~~i~~l~~L~~L~~~L~~n~ 308 (479)
... ..+..-+.|+.| .+..|-
T Consensus 229 ~gS~~La~al~~W~~lrEL--~lnDCl 253 (388)
T COG5238 229 EGSRYLADALCEWNLLREL--RLNDCL 253 (388)
T ss_pred hhHHHHHHHhcccchhhhc--cccchh
Confidence 320 223344557777 444443
No 64
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.12 E-value=0.00062 Score=70.99 Aligned_cols=227 Identities=24% Similarity=0.262 Sum_probs=132.4
Q ss_pred CceEEEecCCC-CCC--C-CCCCCCCCceEEECCCC-C-Ccc----cccccCCCCCCcEEEccCCCCCCCCC--CC-CCC
Q 047943 17 ELRYLHWYEYP-LKT--L-PSNFEPENLLELNLPYS-K-IET----IWEVKKEAPKLKYINLHNSQYLTGMP--DL-SET 83 (479)
Q Consensus 17 ~Lr~L~~~~~~-l~~--l-p~~~~~~~L~~L~L~~s-~-i~~----l~~~~~~l~~L~~L~Ls~~~~l~~~p--~l-~~l 83 (479)
.|+.|.+.++. +.. + +.....++|++|+++++ . +.. .......+.+|+.|+++++..+++.- .+ ..+
T Consensus 189 ~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c 268 (482)
T KOG1947|consen 189 LLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRC 268 (482)
T ss_pred hhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhC
Confidence 67777777764 333 2 33448899999999873 2 111 12334567999999999988765543 22 348
Q ss_pred CCCcEEeecCCCCCCCCCccccc-cCCccccceeeccCCCce---ecCccccCCCCCCEEeccCCCCCCCCCEEecCCCC
Q 047943 84 PNLERLNILNCTNLAYIPSCIHN-FNNLRSVIGLCLRNTAIE---EVPSSIESLTKLEKLDLSYCTRLKGLCKLDLGYCS 159 (479)
Q Consensus 84 ~~L~~L~L~~c~~l~~~p~~l~~-l~~L~~L~~L~L~~~~i~---~lp~~i~~l~~L~~L~L~~c~~L~~L~~L~L~~c~ 159 (479)
++|++|.+.+|..+.. .++.. ....+.|+.|+++++... .+.....++++|+.|.+..+.++..++.+.+.++.
T Consensus 269 ~~L~~L~l~~c~~lt~--~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~~~l~~~~ 346 (482)
T KOG1947|consen 269 PNLETLSLSNCSNLTD--EGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSLTDLSLSGLL 346 (482)
T ss_pred CCcceEccCCCCccch--hHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccHHHHHHHHhh
Confidence 8999999888875322 22221 122334666888876532 24444556777777777776667777777777766
Q ss_pred CCC---ccchhhhccccCCeeeccCccccccC--cccccccCCCCCCCCCCCCCCCCeeecCCCccccccCCCceeecCC
Q 047943 160 KFE---CFPEIIEKMERLRSVDLQSTEVEELP--SSMENLEGLKDLPDSLPNLKSLQFLNVERLFSIADLDKLEDLSISG 234 (479)
Q Consensus 160 ~l~---~~p~~~~~l~~L~~L~L~~~~i~~lp--~~i~~l~~L~~lp~~l~~l~~L~~L~l~~l~~l~~l~~L~~L~l~~ 234 (479)
... ........+++++.+.+...++.... ..+..|+.|+ ..+.+. .....+++.|++..
T Consensus 347 ~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~------------~~l~~~----~~~~~~l~~L~l~~ 410 (482)
T KOG1947|consen 347 TLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLT------------ESLELR----LCRSDSLRVLNLSD 410 (482)
T ss_pred ccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccc------------hHHHHH----hccCCccceEeccc
Confidence 543 23346778888998888887744432 2333333320 111111 01112267777777
Q ss_pred CCCCCCCc--ccCC-CCCCCEEEcCCCCCc
Q 047943 235 RRGLILPP--LLSG-LSSLTKLVLTCCDVI 261 (479)
Q Consensus 235 ~~~~~lp~--~~~~-l~~L~~L~L~~~~l~ 261 (479)
|.....-. .... +..++.+++.++...
T Consensus 411 ~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~ 440 (482)
T KOG1947|consen 411 CRLVTDKGLRCLADSCSNLKDLDLSGCRVI 440 (482)
T ss_pred CccccccchHHHhhhhhccccCCccCcccc
Confidence 76322111 0111 566777777777544
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.96 E-value=0.0054 Score=57.11 Aligned_cols=53 Identities=25% Similarity=0.224 Sum_probs=33.0
Q ss_pred CCCCCCEEEcCCC--CCcc-CCccCCCCCCCCEEeCCCCcCC---ccChhhhcCCCchhHH
Q 047943 246 GLSSLTKLVLTCC--DVIE-IPQDIGCLSSLELLFLCGNNFS---KFTCKYQSTFTAEKTL 300 (479)
Q Consensus 246 ~l~~L~~L~L~~~--~l~~-lp~~l~~l~~L~~L~Ls~n~l~---~lp~~~i~~l~~L~~L 300 (479)
.+++|++|.++.| .+.. ++.....+|+|++|++++|++. +++ .+..+.+|..|
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~--pl~~l~nL~~L 121 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLR--PLKELENLKSL 121 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccc--hhhhhcchhhh
Confidence 3567777777777 4433 5555555677888888887755 333 34455556666
No 66
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.95 E-value=0.0014 Score=68.27 Aligned_cols=36 Identities=31% Similarity=0.482 Sum_probs=23.6
Q ss_pred CCCCCcEEEccCCCCCCCC---CCCCCCCCCcEEeecCC
Q 047943 59 EAPKLKYINLHNSQYLTGM---PDLSETPNLERLNILNC 94 (479)
Q Consensus 59 ~l~~L~~L~Ls~~~~l~~~---p~l~~l~~L~~L~L~~c 94 (479)
.+++|+.+.+..+..+.+. +....+++|+.|++++|
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 224 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGC 224 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCc
Confidence 3677777777777666652 23566777777777763
No 67
>PF07725 LRR_3: Leucine Rich Repeat; InterPro: IPR011713 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by the IPR001611 from INTERPRO model.
Probab=95.90 E-value=0.0054 Score=33.28 Aligned_cols=20 Identities=65% Similarity=1.164 Sum_probs=18.1
Q ss_pred CceEEECCCCCCcccccccC
Q 047943 39 NLLELNLPYSKIETIWEVKK 58 (479)
Q Consensus 39 ~L~~L~L~~s~i~~l~~~~~ 58 (479)
+|++|+|++|+++++|++.+
T Consensus 1 ~LVeL~m~~S~lekLW~G~k 20 (20)
T PF07725_consen 1 NLVELNMPYSKLEKLWEGVK 20 (20)
T ss_pred CcEEEECCCCChHHhcCccC
Confidence 58999999999999999864
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.49 E-value=0.00082 Score=62.91 Aligned_cols=101 Identities=20% Similarity=0.218 Sum_probs=55.1
Q ss_pred CCCCcEEEccCCCCCCCCCCCCCCCCCcEEeecCCCCCCCCCccccccCCccccceeeccCCCceecCccccCCCCCCEE
Q 047943 60 APKLKYINLHNSQYLTGMPDLSETPNLERLNILNCTNLAYIPSCIHNFNNLRSVIGLCLRNTAIEEVPSSIESLTKLEKL 139 (479)
Q Consensus 60 l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c~~l~~~p~~l~~l~~L~~L~~L~L~~~~i~~lp~~i~~l~~L~~L 139 (479)
+.+.+.|+..+|. +.++.-..+|+.||.|.|+=|... ++..+...+.|++|+|..|.|..+..
T Consensus 18 l~~vkKLNcwg~~-L~DIsic~kMp~lEVLsLSvNkIs-----sL~pl~rCtrLkElYLRkN~I~sldE----------- 80 (388)
T KOG2123|consen 18 LENVKKLNCWGCG-LDDISICEKMPLLEVLSLSVNKIS-----SLAPLQRCTRLKELYLRKNCIESLDE----------- 80 (388)
T ss_pred HHHhhhhcccCCC-ccHHHHHHhcccceeEEeeccccc-----cchhHHHHHHHHHHHHHhcccccHHH-----------
Confidence 4555666666653 334443456667777777664432 22333344456667777776665542
Q ss_pred eccCCCCCCCCCEEecCCCCCCCccc-----hhhhccccCCeee
Q 047943 140 DLSYCTRLKGLCKLDLGYCSKFECFP-----EIIEKMERLRSVD 178 (479)
Q Consensus 140 ~L~~c~~L~~L~~L~L~~c~~l~~~p-----~~~~~l~~L~~L~ 178 (479)
|.+.+++++|+.|.|..|.-.+.-+ ..+.-+++|++||
T Consensus 81 -L~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 81 -LEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred -HHHHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 1223445555566665555444333 2456677777775
No 69
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.73 E-value=0.01 Score=33.26 Aligned_cols=20 Identities=40% Similarity=0.481 Sum_probs=12.1
Q ss_pred CCCEEeCCCCcCCccChhhhc
Q 047943 272 SLELLFLCGNNFSKFTCKYQS 292 (479)
Q Consensus 272 ~L~~L~Ls~n~l~~lp~~~i~ 292 (479)
+|++|+|++|+++.+| ..++
T Consensus 1 ~L~~Ldls~n~l~~ip-~~~~ 20 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIP-SSFS 20 (22)
T ss_dssp TESEEEETSSEESEEG-TTTT
T ss_pred CccEEECCCCcCEeCC-hhhc
Confidence 3566666666666666 4343
No 70
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.43 E-value=0.021 Score=29.78 Aligned_cols=16 Identities=25% Similarity=0.372 Sum_probs=7.1
Q ss_pred CCCEEeCCCCcCCccC
Q 047943 272 SLELLFLCGNNFSKFT 287 (479)
Q Consensus 272 ~L~~L~Ls~n~l~~lp 287 (479)
+|+.|+|++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4566666666655554
No 71
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.41 E-value=0.093 Score=43.85 Aligned_cols=74 Identities=12% Similarity=0.138 Sum_probs=30.2
Q ss_pred ccCCCceeecCCCCCCCCC-cccCCCCCCCEEEcCCCCCccCC-ccCCCCCCCCEEeCCCCcCCccChhhhcCCCchhHH
Q 047943 223 DLDKLEDLSISGRRGLILP-PLLSGLSSLTKLVLTCCDVIEIP-QDIGCLSSLELLFLCGNNFSKFTCKYQSTFTAEKTL 300 (479)
Q Consensus 223 ~l~~L~~L~l~~~~~~~lp-~~~~~l~~L~~L~L~~~~l~~lp-~~l~~l~~L~~L~Ls~n~l~~lp~~~i~~l~~L~~L 300 (479)
++++|+.+.+.+. ...++ ..+.++++|+.+.+.+ .+..++ ..+..+++|+.+++..+ ++.++...+... +|+.+
T Consensus 33 ~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i 108 (129)
T PF13306_consen 33 NCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEI 108 (129)
T ss_dssp T-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T--EE
T ss_pred ccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccCcc-ccEEchhhhcCC-CceEE
Confidence 3444455555443 22222 2344555677777754 443332 33445667777776554 444442334443 44444
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.24 E-value=0.019 Score=32.14 Aligned_cols=21 Identities=33% Similarity=0.597 Sum_probs=14.8
Q ss_pred cCCeeeccCccccccCccccc
Q 047943 173 RLRSVDLQSTEVEELPSSMEN 193 (479)
Q Consensus 173 ~L~~L~L~~~~i~~lp~~i~~ 193 (479)
+|++|++++|.++.+|.++++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 467778888877777766544
No 73
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=93.81 E-value=0.24 Score=41.25 Aligned_cols=55 Identities=29% Similarity=0.388 Sum_probs=27.8
Q ss_pred CCCCceEEECCCCCCcccc-cccCCCCCCcEEEccCCCCCCCCC--CCCCCCCCcEEeecC
Q 047943 36 EPENLLELNLPYSKIETIW-EVKKEAPKLKYINLHNSQYLTGMP--DLSETPNLERLNILN 93 (479)
Q Consensus 36 ~~~~L~~L~L~~s~i~~l~-~~~~~l~~L~~L~Ls~~~~l~~~p--~l~~l~~L~~L~L~~ 93 (479)
.+.+|+.+.++. .++.+. ..+..+++|+.+.+.++ +..++ .|..+++|+.+.+.+
T Consensus 10 ~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~ 67 (129)
T PF13306_consen 10 NCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPN 67 (129)
T ss_dssp T-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETS
T ss_pred CCCCCCEEEECC-CeeEeChhhccccccccccccccc--ccccceeeeecccccccccccc
Confidence 555777777764 466664 33566667777777663 45544 366676777777754
No 74
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.39 E-value=0.084 Score=27.50 Aligned_cols=17 Identities=24% Similarity=0.387 Sum_probs=9.1
Q ss_pred CCCCEEEcCCCCCccCC
Q 047943 248 SSLTKLVLTCCDVIEIP 264 (479)
Q Consensus 248 ~~L~~L~L~~~~l~~lp 264 (479)
++|+.|++++|++.++|
T Consensus 1 ~~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNRLTSLP 17 (17)
T ss_dssp TT-SEEEETSS--SSE-
T ss_pred CccCEEECCCCCCCCCc
Confidence 36777777777776654
No 75
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.33 E-value=0.029 Score=52.82 Aligned_cols=106 Identities=16% Similarity=0.155 Sum_probs=73.0
Q ss_pred cCCCceeecCCCCCCCCCcccCCCCCCCEEEcCCCCCccCCccCCCCCCCCEEeCCCCcCCccCh-hhhcCCCchhHHHH
Q 047943 224 LDKLEDLSISGRRGLILPPLLSGLSSLTKLVLTCCDVIEIPQDIGCLSSLELLFLCGNNFSKFTC-KYQSTFTAEKTLLE 302 (479)
Q Consensus 224 l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~-~~i~~l~~L~~L~~ 302 (479)
+.+.+.|+..||....+.- ...|+.|+.|.|+-|.++.+.. +..|+.|++|.|..|.|.++.. ..+.++++|+.|
T Consensus 18 l~~vkKLNcwg~~L~DIsi-c~kMp~lEVLsLSvNkIssL~p-l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L-- 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISI-CEKMPLLEVLSLSVNKISSLAP-LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL-- 93 (388)
T ss_pred HHHhhhhcccCCCccHHHH-HHhcccceeEEeeccccccchh-HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH--
Confidence 5567778888888555443 5578899999999998888543 5678899999999998776541 356788888888
Q ss_pred HhhhhhhhhccCCc---cccCCCccccccCCCCc
Q 047943 303 LLQYATVITRASSS---STLFSCNELQAAPVFAR 333 (479)
Q Consensus 303 ~L~~n~~~~~~~~~---~~l~~C~~L~~lp~lp~ 333 (479)
=|..|.-.+.++.. ..+.-.++|+.+.+.|-
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLDnv~V 127 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLDNVPV 127 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhccCccc
Confidence 77777665544321 23444555555555453
No 76
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.98 E-value=0.13 Score=46.43 Aligned_cols=57 Identities=23% Similarity=0.239 Sum_probs=40.3
Q ss_pred cCCCCCCCEEEcCCCCCcc---CCccCCCCCCCCEEeCCCCc-CCccChhhhcCCCchhHH
Q 047943 244 LSGLSSLTKLVLTCCDVIE---IPQDIGCLSSLELLFLCGNN-FSKFTCKYQSTFTAEKTL 300 (479)
Q Consensus 244 ~~~l~~L~~L~L~~~~l~~---lp~~l~~l~~L~~L~Ls~n~-l~~lp~~~i~~l~~L~~L 300 (479)
+..+++++.|.+.+|.-.+ +...-+-.++|+.|+|++|. ||+--...+..+++|+.|
T Consensus 121 L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 121 LRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred HhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 4556677777777775433 33333456789999999887 885554688889999999
No 77
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=89.10 E-value=0.41 Score=27.76 Aligned_cols=18 Identities=33% Similarity=0.405 Sum_probs=14.4
Q ss_pred CCCCCEEeCCCCcCCccC
Q 047943 270 LSSLELLFLCGNNFSKFT 287 (479)
Q Consensus 270 l~~L~~L~Ls~n~l~~lp 287 (479)
+++|+.|+|++|.++.+|
T Consensus 1 L~~L~~L~L~~N~l~~lp 18 (26)
T smart00369 1 LPNLRELDLSNNQLSSLP 18 (26)
T ss_pred CCCCCEEECCCCcCCcCC
Confidence 457888888888888887
No 78
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=89.10 E-value=0.41 Score=27.76 Aligned_cols=18 Identities=33% Similarity=0.405 Sum_probs=14.4
Q ss_pred CCCCCEEeCCCCcCCccC
Q 047943 270 LSSLELLFLCGNNFSKFT 287 (479)
Q Consensus 270 l~~L~~L~Ls~n~l~~lp 287 (479)
+++|+.|+|++|.++.+|
T Consensus 1 L~~L~~L~L~~N~l~~lp 18 (26)
T smart00370 1 LPNLRELDLSNNQLSSLP 18 (26)
T ss_pred CCCCCEEECCCCcCCcCC
Confidence 457888888888888887
No 79
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.89 E-value=0.15 Score=45.93 Aligned_cols=70 Identities=20% Similarity=0.336 Sum_probs=51.8
Q ss_pred CCCCCC-CCCCceEEECCCCCCccc-ccccCCCCCCcEEEccCCCCCCCCC--CCC-CCCCCcEEeecCCCCCCC
Q 047943 30 TLPSNF-EPENLLELNLPYSKIETI-WEVKKEAPKLKYINLHNSQYLTGMP--DLS-ETPNLERLNILNCTNLAY 99 (479)
Q Consensus 30 ~lp~~~-~~~~L~~L~L~~s~i~~l-~~~~~~l~~L~~L~Ls~~~~l~~~p--~l~-~l~~L~~L~L~~c~~l~~ 99 (479)
++|-.. .-..++.++-+++.|... -+-+.+++.++.|.+.+|.++.+-- -++ -+++|+.|++++|..+++
T Consensus 92 ~lp~~~~~~~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~ 166 (221)
T KOG3864|consen 92 SLPGPNADNVKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITD 166 (221)
T ss_pred cCCCCCCCcceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeech
Confidence 566554 556789999999988643 2556788899999999998876631 222 468999999999987743
No 80
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=83.42 E-value=0.77 Score=26.54 Aligned_cols=21 Identities=29% Similarity=0.623 Sum_probs=16.5
Q ss_pred cccCCeeeccCccccccCccc
Q 047943 171 MERLRSVDLQSTEVEELPSSM 191 (479)
Q Consensus 171 l~~L~~L~L~~~~i~~lp~~i 191 (479)
+++|+.|++++|.++.+|...
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 357888999999888887653
No 81
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=83.42 E-value=0.77 Score=26.54 Aligned_cols=21 Identities=29% Similarity=0.623 Sum_probs=16.5
Q ss_pred cccCCeeeccCccccccCccc
Q 047943 171 MERLRSVDLQSTEVEELPSSM 191 (479)
Q Consensus 171 l~~L~~L~L~~~~i~~lp~~i 191 (479)
+++|+.|++++|.++.+|...
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 357888999999888887653
No 82
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=80.44 E-value=0.047 Score=50.18 Aligned_cols=84 Identities=11% Similarity=0.145 Sum_probs=57.3
Q ss_pred cCCCCCCcEEEccCCCCCCCCCCCCCCCCCcEEeecCCCCCCCCCccccccCCccccceeeccCCCceecCccccCCCCC
Q 047943 57 KKEAPKLKYINLHNSQYLTGMPDLSETPNLERLNILNCTNLAYIPSCIHNFNNLRSVIGLCLRNTAIEEVPSSIESLTKL 136 (479)
Q Consensus 57 ~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c~~l~~~p~~l~~l~~L~~L~~L~L~~~~i~~lp~~i~~l~~L 136 (479)
+..+...+.||++.++....-..|+.++.|++|+++. +.+...|..++.+..+.+ +++..|..+..|.+.+..+++
T Consensus 38 i~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sk-nq~~~~~~d~~q~~e~~~---~~~~~n~~~~~p~s~~k~~~~ 113 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSK-NQIKFLPKDAKQQRETVN---AASHKNNHSQQPKSQKKEPHP 113 (326)
T ss_pred hhccceeeeehhhhhHHHhhccchHHHHHHHHHhccH-hhHhhChhhHHHHHHHHH---HHhhccchhhCCccccccCCc
Confidence 4556667777777776544444677777777777776 344566666665554444 677777778888888888888
Q ss_pred CEEeccCC
Q 047943 137 EKLDLSYC 144 (479)
Q Consensus 137 ~~L~L~~c 144 (479)
+++++.+.
T Consensus 114 k~~e~k~~ 121 (326)
T KOG0473|consen 114 KKNEQKKT 121 (326)
T ss_pred chhhhccC
Confidence 88877763
No 83
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=77.84 E-value=1.5 Score=25.56 Aligned_cols=17 Identities=24% Similarity=0.362 Sum_probs=14.8
Q ss_pred CCCCEEeCCCCcCCccC
Q 047943 271 SSLELLFLCGNNFSKFT 287 (479)
Q Consensus 271 ~~L~~L~Ls~n~l~~lp 287 (479)
++|+.|++++|+++++|
T Consensus 2 ~~L~~L~vs~N~Lt~LP 18 (26)
T smart00364 2 PSLKELNVSNNQLTSLP 18 (26)
T ss_pred cccceeecCCCccccCc
Confidence 47889999999999888
No 84
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=74.17 E-value=0.034 Score=57.80 Aligned_cols=187 Identities=21% Similarity=0.221 Sum_probs=87.8
Q ss_pred CcEEeecCCCCCCCCCccc-cccCCccccceeeccCCCceecCccccCC-CCCCEEeccCCCCCCCCCEEecCCCCCCC-
Q 047943 86 LERLNILNCTNLAYIPSCI-HNFNNLRSVIGLCLRNTAIEEVPSSIESL-TKLEKLDLSYCTRLKGLCKLDLGYCSKFE- 162 (479)
Q Consensus 86 L~~L~L~~c~~l~~~p~~l-~~l~~L~~L~~L~L~~~~i~~lp~~i~~l-~~L~~L~L~~c~~L~~L~~L~L~~c~~l~- 162 (479)
+..|.|.+|.........+ ..+.-..+|..|++++|.+.. .....+ ..|+. .-..+++|++..|....
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~--~g~~~l~~~l~~-------~~~~l~~L~l~~c~l~~~ 159 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGD--EGARLLCEGLRL-------PQCLLQTLELVSCSLTSE 159 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCcc--HhHHHHHhhccc-------chHHHHHHHhhccccccc
Confidence 6666777665443322221 234444455556666665541 110000 00000 01234445555565442
Q ss_pred ---ccchhhhccccCCeeeccCccccc-----cCcccccccCCCCCCCCCCCCCCCCeeecCCCccccccCCCceeecCC
Q 047943 163 ---CFPEIIEKMERLRSVDLQSTEVEE-----LPSSMENLEGLKDLPDSLPNLKSLQFLNVERLFSIADLDKLEDLSISG 234 (479)
Q Consensus 163 ---~~p~~~~~l~~L~~L~L~~~~i~~-----lp~~i~~l~~L~~lp~~l~~l~~L~~L~l~~l~~l~~l~~L~~L~l~~ 234 (479)
.+...+.....++.++++.|.+.. ++..+.+ .+. ...++++|++..
T Consensus 160 g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~---------~~~-----------------~~~~le~L~L~~ 213 (478)
T KOG4308|consen 160 GAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALES---------AAS-----------------PLSSLETLKLSR 213 (478)
T ss_pred chHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhh---------hhc-----------------ccccHHHHhhhh
Confidence 345566667788888888887753 1111111 111 223344444444
Q ss_pred CCCC-----CCCcccCCCCC-CCEEEcCCCCCcc-----CCccCCCC-CCCCEEeCCCCcCC-----ccChhhhcCCCch
Q 047943 235 RRGL-----ILPPLLSGLSS-LTKLVLTCCDVIE-----IPQDIGCL-SSLELLFLCGNNFS-----KFTCKYQSTFTAE 297 (479)
Q Consensus 235 ~~~~-----~lp~~~~~l~~-L~~L~L~~~~l~~-----lp~~l~~l-~~L~~L~Ls~n~l~-----~lp~~~i~~l~~L 297 (479)
|... .+-..+...++ +.+|++.+|.+.+ +...+... ..++.++++.|.++ .+. ..+..++.+
T Consensus 214 ~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~-~~l~~~~~l 292 (478)
T KOG4308|consen 214 CGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLA-EVLVSCRQL 292 (478)
T ss_pred cCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHH-HHHhhhHHH
Confidence 4421 01111122233 5556666666554 22223333 55667777777655 333 445556667
Q ss_pred hHHHHHhhhhhhh
Q 047943 298 KTLLELLQYATVI 310 (479)
Q Consensus 298 ~~L~~~L~~n~~~ 310 (479)
+.+ .+++|.+.
T Consensus 293 ~~l--~l~~n~l~ 303 (478)
T KOG4308|consen 293 EEL--SLSNNPLT 303 (478)
T ss_pred HHh--hcccCccc
Confidence 777 77666654
No 85
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=71.46 E-value=3.4 Score=24.12 Aligned_cols=18 Identities=39% Similarity=0.438 Sum_probs=14.1
Q ss_pred CCCCCEEeCCCCcCCccC
Q 047943 270 LSSLELLFLCGNNFSKFT 287 (479)
Q Consensus 270 l~~L~~L~Ls~n~l~~lp 287 (479)
+.+|+.|++++|+|+.+.
T Consensus 1 L~~L~~L~L~~NkI~~IE 18 (26)
T smart00365 1 LTNLEELDLSQNKIKKIE 18 (26)
T ss_pred CCccCEEECCCCccceec
Confidence 357889999999887664
No 86
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=69.99 E-value=0.1 Score=47.98 Aligned_cols=61 Identities=13% Similarity=-0.018 Sum_probs=34.3
Q ss_pred ccCCCceeecCCCCCCCCCcccCCCCCCCEEEcCCCCCccCCccCCCCCCCCEEeCCCCcC
Q 047943 223 DLDKLEDLSISGRRGLILPPLLSGLSSLTKLVLTCCDVIEIPQDIGCLSSLELLFLCGNNF 283 (479)
Q Consensus 223 ~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l 283 (479)
-+..|.+|+++.+....+|..+.....++.+++.+|+....|.+.+..++++++++.++.+
T Consensus 63 ~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~k~~~~ 123 (326)
T KOG0473|consen 63 ILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQKKTEF 123 (326)
T ss_pred HHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhhccCcc
Confidence 3445555555555555555555555555555555555555565566666666666665553
No 87
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=65.15 E-value=4.4 Score=23.36 Aligned_cols=14 Identities=50% Similarity=1.049 Sum_probs=7.5
Q ss_pred CCCcEEeecCCCCC
Q 047943 84 PNLERLNILNCTNL 97 (479)
Q Consensus 84 ~~L~~L~L~~c~~l 97 (479)
++|++|++++|..+
T Consensus 2 ~~L~~L~l~~C~~i 15 (26)
T smart00367 2 PNLRELDLSGCTNI 15 (26)
T ss_pred CCCCEeCCCCCCCc
Confidence 45555555555544
No 88
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=64.43 E-value=3.6 Score=23.16 Aligned_cols=15 Identities=33% Similarity=0.348 Sum_probs=8.9
Q ss_pred CCCCCEEeCCCCcCC
Q 047943 270 LSSLELLFLCGNNFS 284 (479)
Q Consensus 270 l~~L~~L~Ls~n~l~ 284 (479)
+++|+.|+|++|.++
T Consensus 1 ~~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 1 NPNLETLDLSNNQIT 15 (24)
T ss_dssp -TT-SEEE-TSSBEH
T ss_pred CCCCCEEEccCCcCC
Confidence 357778888887765
No 89
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=51.12 E-value=13 Score=21.90 Aligned_cols=14 Identities=36% Similarity=0.363 Sum_probs=11.0
Q ss_pred CCCCEEeCCCCcCC
Q 047943 271 SSLELLFLCGNNFS 284 (479)
Q Consensus 271 ~~L~~L~Ls~n~l~ 284 (479)
++|++|+|++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 46888888888775
No 90
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=49.25 E-value=4.7 Score=41.96 Aligned_cols=16 Identities=19% Similarity=0.416 Sum_probs=10.0
Q ss_pred CCccceeeEEEEEeec
Q 047943 397 NENLIGIALCAIISFE 412 (479)
Q Consensus 397 ~~~~~g~~~c~v~~~~ 412 (479)
..+.+||++--|+.-.
T Consensus 443 ~~~~l~ftv~G~f~d~ 458 (585)
T KOG3763|consen 443 TGNLLGFTVAGVFRDG 458 (585)
T ss_pred ccceEEEEEEEEeecC
Confidence 4466777777766533
No 91
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=44.94 E-value=0.8 Score=47.75 Aligned_cols=18 Identities=22% Similarity=0.396 Sum_probs=8.8
Q ss_pred cccCCCCCCcEEEccCCC
Q 047943 55 EVKKEAPKLKYINLHNSQ 72 (479)
Q Consensus 55 ~~~~~l~~L~~L~Ls~~~ 72 (479)
.+++..+.|..|++++|.
T Consensus 109 ~~l~t~~~L~~L~l~~n~ 126 (478)
T KOG4308|consen 109 QALKTLPTLGQLDLSGNN 126 (478)
T ss_pred HHhcccccHhHhhcccCC
Confidence 344445555555555543
No 92
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=33.44 E-value=20 Score=37.55 Aligned_cols=36 Identities=19% Similarity=0.423 Sum_probs=17.0
Q ss_pred CCCCCcEEEccCCCCCC--CCCCC-CCCCCCcEEeecCC
Q 047943 59 EAPKLKYINLHNSQYLT--GMPDL-SETPNLERLNILNC 94 (479)
Q Consensus 59 ~l~~L~~L~Ls~~~~l~--~~p~l-~~l~~L~~L~L~~c 94 (479)
+.+.+..++|++|+... .+.++ ...|+|..|+|++|
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 44555555565554221 11121 33556666666665
No 93
>PF05725 FNIP: FNIP Repeat; InterPro: IPR008615 This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum (Slime mould). It appears to be related to IPR001611 from INTERPRO. The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.
Probab=30.16 E-value=1.1e+02 Score=20.13 Aligned_cols=35 Identities=17% Similarity=0.208 Sum_probs=19.8
Q ss_pred CCCccCceEEEecCCCCCCCCCCCCCCCceEEECC
Q 047943 12 EYLPEELRYLHWYEYPLKTLPSNFEPENLLELNLP 46 (479)
Q Consensus 12 ~~l~~~Lr~L~~~~~~l~~lp~~~~~~~L~~L~L~ 46 (479)
..+|+.++.|.+.+.--+.+....-++.|++|.+.
T Consensus 8 ~~iP~~l~~L~~g~~fn~~i~~~~lP~sl~~L~fg 42 (44)
T PF05725_consen 8 GSIPSSLKSLIFGSSFNQPIEPGSLPNSLKSLSFG 42 (44)
T ss_pred CeeCCCCeEEEECCccCccCCCCccCCCceEEEee
Confidence 45777888888833222333333345566666654
Done!