Query 047943
Match_columns 479
No_of_seqs 412 out of 3763
Neff 9.0
Searched_HMMs 29240
Date Mon Mar 25 07:52:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047943.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047943hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4eco_A Uncharacterized protein 100.0 6.1E-30 2.1E-34 274.9 13.5 275 30-308 197-547 (636)
2 3rgz_A Protein brassinosteroid 100.0 4.7E-29 1.6E-33 273.8 16.9 191 6-197 284-492 (768)
3 3vq2_A TLR4, TOLL-like recepto 100.0 5.5E-28 1.9E-32 258.2 22.9 139 170-310 348-510 (606)
4 4ecn_A Leucine-rich repeat pro 100.0 1.2E-28 4.3E-33 270.8 16.7 274 31-308 440-787 (876)
5 3rgz_A Protein brassinosteroid 100.0 8.4E-28 2.9E-32 263.8 22.7 306 13-327 198-542 (768)
6 3vq2_A TLR4, TOLL-like recepto 100.0 2.8E-27 9.4E-32 252.8 24.6 302 14-328 30-502 (606)
7 3t6q_A CD180 antigen; protein- 100.0 1.1E-26 3.7E-31 248.2 28.5 314 8-328 50-481 (606)
8 3v47_A TOLL-like receptor 5B a 100.0 2.2E-27 7.4E-32 244.6 21.3 310 14-328 28-400 (455)
9 4fmz_A Internalin; leucine ric 100.0 4.6E-27 1.6E-31 233.6 22.9 271 13-311 42-325 (347)
10 3t6q_A CD180 antigen; protein- 100.0 5.2E-27 1.8E-31 250.7 24.8 297 9-310 26-413 (606)
11 2z63_A TOLL-like receptor 4, v 99.9 3.4E-27 1.2E-31 249.9 21.2 156 169-328 344-523 (570)
12 4eco_A Uncharacterized protein 99.9 1.2E-27 4.3E-32 256.9 17.1 292 7-309 239-599 (636)
13 1o6v_A Internalin A; bacterial 99.9 4.2E-26 1.4E-30 236.1 23.3 291 17-328 47-358 (466)
14 2z81_A CD282 antigen, TOLL-lik 99.9 6.2E-26 2.1E-30 239.3 23.2 135 172-310 310-486 (549)
15 2z7x_B TOLL-like receptor 1, v 99.9 3E-26 1E-30 240.3 20.5 284 14-310 19-457 (520)
16 3v47_A TOLL-like receptor 5B a 99.9 4.1E-26 1.4E-30 235.1 19.8 302 18-328 12-376 (455)
17 2id5_A Lingo-1, leucine rich r 99.9 1.1E-25 3.6E-30 233.6 22.5 280 13-310 29-333 (477)
18 4ecn_A Leucine-rich repeat pro 99.9 2.6E-26 8.9E-31 252.3 18.6 291 7-309 481-839 (876)
19 2z81_A CD282 antigen, TOLL-lik 99.9 3.7E-26 1.3E-30 241.1 19.1 292 8-309 43-509 (549)
20 1o6v_A Internalin A; bacterial 99.9 2.3E-25 7.7E-30 230.6 24.2 296 10-328 63-380 (466)
21 2z63_A TOLL-like receptor 4, v 99.9 8.1E-26 2.8E-30 239.4 21.1 310 9-328 21-499 (570)
22 3o6n_A APL1; leucine-rich repe 99.9 9.6E-26 3.3E-30 227.9 20.2 269 16-310 45-331 (390)
23 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 2.3E-25 7.8E-30 236.0 23.0 135 19-160 34-181 (562)
24 2z7x_B TOLL-like receptor 1, v 99.9 1.6E-26 5.3E-31 242.5 13.9 292 9-309 39-480 (520)
25 4fmz_A Internalin; leucine ric 99.9 5.1E-25 1.7E-29 218.8 23.7 273 9-310 60-346 (347)
26 2id5_A Lingo-1, leucine rich r 99.9 5.8E-25 2E-29 228.1 23.5 290 18-328 13-325 (477)
27 3o6n_A APL1; leucine-rich repe 99.9 5.1E-25 1.7E-29 222.6 20.1 275 7-310 60-352 (390)
28 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 3.2E-25 1.1E-29 234.9 19.2 277 9-310 70-486 (562)
29 1ziw_A TOLL-like receptor 3; i 99.9 1.5E-24 5.1E-29 234.8 24.6 82 13-95 22-108 (680)
30 3oja_B Anopheles plasmodium-re 99.9 4.9E-25 1.7E-29 235.2 19.7 268 16-310 51-337 (597)
31 4g8a_A TOLL-like receptor 4; l 99.9 4.2E-24 1.4E-28 228.6 26.1 298 7-311 43-556 (635)
32 3j0a_A TOLL-like receptor 5; m 99.9 1.3E-24 4.4E-29 240.9 22.3 90 8-98 41-137 (844)
33 1xku_A Decorin; proteoglycan, 99.9 5.9E-24 2E-28 209.8 24.5 255 17-309 32-305 (330)
34 1ziw_A TOLL-like receptor 3; i 99.9 5.6E-24 1.9E-28 230.3 26.4 294 10-309 44-442 (680)
35 2ft3_A Biglycan; proteoglycan, 99.9 2.9E-24 9.9E-29 212.3 21.5 254 17-309 34-306 (332)
36 3j0a_A TOLL-like receptor 5; m 99.9 2.6E-24 8.8E-29 238.5 22.8 294 14-310 22-375 (844)
37 3bz5_A Internalin-J, INLJ; leu 99.9 6.8E-24 2.3E-28 218.8 24.4 168 12-197 39-214 (457)
38 1jl5_A Outer protein YOPM; leu 99.9 2.4E-23 8E-28 214.6 27.5 267 14-311 89-371 (454)
39 3oja_B Anopheles plasmodium-re 99.9 2E-24 6.9E-29 230.3 19.4 271 12-311 72-359 (597)
40 4fcg_A Uncharacterized protein 99.9 2.2E-24 7.6E-29 212.9 17.5 215 16-300 81-306 (328)
41 1xku_A Decorin; proteoglycan, 99.9 5.6E-23 1.9E-27 202.8 26.8 259 12-307 48-329 (330)
42 1ogq_A PGIP-2, polygalacturona 99.9 2.6E-24 8.9E-29 211.0 12.8 237 38-309 50-303 (313)
43 2ft3_A Biglycan; proteoglycan, 99.9 1.4E-22 4.8E-27 200.1 23.6 256 14-307 52-330 (332)
44 3bz5_A Internalin-J, INLJ; leu 99.9 2E-22 6.9E-27 207.8 24.9 267 10-309 59-351 (457)
45 3g06_A SSPH2 (leucine-rich rep 99.9 2.9E-22 9.9E-27 213.3 26.2 251 14-310 38-297 (622)
46 4fcg_A Uncharacterized protein 99.9 1E-22 3.5E-27 201.0 17.1 214 61-328 81-306 (328)
47 3zyj_A Leucine-rich repeat-con 99.9 3.7E-22 1.3E-26 205.0 21.0 241 17-309 44-291 (440)
48 4g8a_A TOLL-like receptor 4; l 99.9 1.7E-21 5.8E-26 208.3 26.8 294 9-309 70-579 (635)
49 3zyi_A Leucine-rich repeat-con 99.9 4.3E-22 1.5E-26 205.2 21.1 235 17-284 55-303 (452)
50 2z80_A TOLL-like receptor 2, v 99.9 4.6E-23 1.6E-27 205.4 10.4 259 17-309 32-313 (353)
51 1ogq_A PGIP-2, polygalacturona 99.9 1.8E-22 6.1E-27 197.9 13.1 218 61-312 50-283 (313)
52 1jl5_A Outer protein YOPM; leu 99.9 6.8E-21 2.3E-25 196.2 23.8 271 16-316 111-415 (454)
53 2z66_A Variable lymphocyte rec 99.9 1.1E-21 3.6E-26 191.4 16.7 234 19-284 10-261 (306)
54 3o53_A Protein LRIM1, AGAP0063 99.9 3.1E-22 1.1E-26 196.5 12.8 255 18-312 12-277 (317)
55 1ozn_A Reticulon 4 receptor; N 99.9 7.7E-21 2.6E-25 183.4 19.9 153 18-188 13-169 (285)
56 2z66_A Variable lymphocyte rec 99.9 4.5E-21 1.5E-25 187.0 17.0 234 41-309 10-260 (306)
57 3g06_A SSPH2 (leucine-rich rep 99.9 4.1E-20 1.4E-24 196.7 25.4 233 14-287 59-300 (622)
58 1wwl_A Monocyte differentiatio 99.9 8.9E-23 3E-27 199.9 3.3 245 17-310 44-309 (312)
59 2z80_A TOLL-like receptor 2, v 99.9 4E-21 1.4E-25 191.3 14.5 243 13-287 49-317 (353)
60 3zyj_A Leucine-rich repeat-con 99.8 6E-20 2E-24 188.5 23.1 229 9-286 57-294 (440)
61 3zyi_A Leucine-rich repeat-con 99.8 7.9E-20 2.7E-24 188.2 22.7 218 11-261 70-303 (452)
62 3oja_A Leucine-rich immune mol 99.8 7.3E-21 2.5E-25 197.7 15.0 233 36-308 32-273 (487)
63 1ozn_A Reticulon 4 receptor; N 99.8 4.3E-20 1.5E-24 178.2 19.0 204 13-286 29-240 (285)
64 1z7x_W Ribonuclease inhibitor; 99.8 5.1E-23 1.7E-27 212.2 -4.6 295 11-309 24-410 (461)
65 2z62_A TOLL-like receptor 4, v 99.8 5.4E-19 1.9E-23 169.6 20.1 221 20-285 11-238 (276)
66 3o53_A Protein LRIM1, AGAP0063 99.8 1E-21 3.6E-26 192.7 -0.0 228 16-282 34-273 (317)
67 1h6u_A Internalin H; cell adhe 99.8 7.8E-19 2.7E-23 171.5 16.9 194 37-287 40-233 (308)
68 1z7x_W Ribonuclease inhibitor; 99.8 4.1E-22 1.4E-26 205.4 -8.7 292 14-310 1-383 (461)
69 1p9a_G Platelet glycoprotein I 99.8 4.6E-18 1.6E-22 164.6 18.7 201 12-285 7-209 (290)
70 1wwl_A Monocyte differentiatio 99.8 9E-20 3.1E-24 178.5 5.7 223 14-285 61-310 (312)
71 2o6q_A Variable lymphocyte rec 99.8 2.9E-17 9.9E-22 157.1 22.6 198 17-286 17-220 (270)
72 2xwt_C Thyrotropin receptor; s 99.8 1.6E-18 5.5E-23 162.7 13.4 144 28-188 23-172 (239)
73 2xwt_C Thyrotropin receptor; s 99.8 2.5E-18 8.6E-23 161.4 14.4 158 14-188 29-196 (239)
74 2z62_A TOLL-like receptor 4, v 99.8 1.6E-17 5.3E-22 159.4 20.2 206 10-262 22-238 (276)
75 1h6u_A Internalin H; cell adhe 99.8 2.9E-18 9.9E-23 167.5 14.1 210 40-310 21-230 (308)
76 3ogk_B Coronatine-insensitive 99.8 1.1E-20 3.9E-25 200.8 -4.0 85 222-309 433-525 (592)
77 1p9a_G Platelet glycoprotein I 99.8 1E-17 3.5E-22 162.1 16.9 175 84-309 31-207 (290)
78 2o6q_A Variable lymphocyte rec 99.8 2.7E-17 9.3E-22 157.3 18.9 197 39-309 17-217 (270)
79 3oja_A Leucine-rich immune mol 99.8 1.3E-18 4.5E-23 180.7 9.8 225 16-279 34-270 (487)
80 4glp_A Monocyte differentiatio 99.8 1.5E-17 5.3E-22 162.4 16.8 228 36-309 62-306 (310)
81 3rfs_A Internalin B, repeat mo 99.7 1.9E-16 6.6E-21 151.6 21.8 214 19-312 22-237 (272)
82 4ay9_X Follicle-stimulating ho 99.7 2E-17 6.8E-22 164.5 14.7 234 19-306 12-255 (350)
83 2ca6_A RAN GTPase-activating p 99.7 6.3E-19 2.2E-23 177.6 1.7 245 29-310 22-316 (386)
84 4glp_A Monocyte differentiatio 99.7 1.1E-17 3.7E-22 163.5 9.5 98 222-328 194-299 (310)
85 3rfs_A Internalin B, repeat mo 99.7 5.8E-17 2E-21 155.3 13.3 197 38-309 19-217 (272)
86 2ast_B S-phase kinase-associat 99.7 6.9E-18 2.3E-22 166.4 6.7 209 38-281 47-282 (336)
87 3ogk_B Coronatine-insensitive 99.7 1.8E-18 6.3E-23 183.7 -0.9 247 36-286 218-528 (592)
88 3m19_A Variable lymphocyte rec 99.7 1.8E-15 6.2E-20 143.0 19.3 61 226-286 132-194 (251)
89 3cvr_A Invasion plasmid antige 99.7 5E-16 1.7E-20 163.3 17.0 184 39-292 60-251 (571)
90 3goz_A Leucine-rich repeat-con 99.7 1.5E-17 5.2E-22 166.1 3.5 107 21-127 3-125 (362)
91 1h6t_A Internalin B; cell adhe 99.7 2.3E-16 7.8E-21 152.7 11.6 61 244-309 152-212 (291)
92 2ca6_A RAN GTPase-activating p 99.7 6.2E-18 2.1E-22 170.3 -0.1 236 7-287 24-319 (386)
93 2ast_B S-phase kinase-associat 99.7 5.8E-17 2E-21 159.7 6.7 232 17-287 48-309 (336)
94 1h6t_A Internalin B; cell adhe 99.7 2.8E-16 9.5E-21 152.1 11.0 194 37-287 23-216 (291)
95 2p1m_B Transport inhibitor res 99.6 3.1E-18 1E-22 182.0 -4.0 109 223-342 395-518 (594)
96 3cvr_A Invasion plasmid antige 99.6 2.2E-15 7.5E-20 158.5 16.6 193 16-269 59-252 (571)
97 2p1m_B Transport inhibitor res 99.6 8.8E-19 3E-23 186.2 -9.8 102 206-309 395-518 (594)
98 1m9s_A Internalin B; cell inva 99.6 4.2E-16 1.4E-20 165.5 10.5 191 40-287 23-213 (605)
99 4ay9_X Follicle-stimulating ho 99.6 1.9E-15 6.6E-20 150.1 13.3 211 41-300 12-231 (350)
100 3goz_A Leucine-rich repeat-con 99.6 4.4E-17 1.5E-21 162.7 1.2 241 42-310 2-297 (362)
101 3m19_A Variable lymphocyte rec 99.6 1.3E-14 4.6E-19 137.0 18.0 170 17-217 15-188 (251)
102 4ezg_A Putative uncharacterize 99.6 1.9E-15 6.4E-20 137.5 10.6 58 36-95 42-99 (197)
103 1m9s_A Internalin B; cell inva 99.6 3.4E-15 1.2E-19 158.5 13.9 175 79-312 38-212 (605)
104 1xeu_A Internalin C; cellular 99.6 2.8E-15 9.7E-20 142.8 8.2 172 36-287 17-188 (263)
105 1dce_A Protein (RAB geranylger 99.5 1.4E-17 4.8E-22 175.7 -12.3 105 150-287 443-549 (567)
106 4ezg_A Putative uncharacterize 99.5 3.3E-14 1.1E-18 129.2 11.5 149 17-186 45-195 (197)
107 3e6j_A Variable lymphocyte rec 99.5 4.7E-14 1.6E-18 131.4 12.1 81 226-308 89-170 (229)
108 1xeu_A Internalin C; cellular 99.5 1.7E-14 5.8E-19 137.4 8.5 80 225-310 106-185 (263)
109 2o6s_A Variable lymphocyte rec 99.5 1.1E-13 3.9E-18 126.6 13.8 155 15-194 27-188 (208)
110 2o6s_A Variable lymphocyte rec 99.5 6.9E-14 2.4E-18 128.0 12.2 170 19-209 10-190 (208)
111 1dce_A Protein (RAB geranylger 99.5 4E-16 1.4E-20 164.6 -3.4 196 107-312 345-548 (567)
112 2xot_A Amphoterin-induced prot 99.5 1E-13 3.5E-18 138.2 13.1 83 225-309 112-201 (361)
113 2v9t_B SLIT homolog 2 protein 99.5 1.2E-13 4.1E-18 127.8 11.5 150 87-285 14-166 (220)
114 3e6j_A Variable lymphocyte rec 99.5 1E-12 3.5E-17 122.2 15.9 149 17-186 20-173 (229)
115 2v70_A SLIT-2, SLIT homolog 2 99.5 2.8E-13 9.4E-18 125.4 11.7 149 87-284 14-166 (220)
116 2v70_A SLIT-2, SLIT homolog 2 99.5 6.8E-13 2.3E-17 122.7 14.2 150 18-185 13-166 (220)
117 2v9t_B SLIT homolog 2 protein 99.4 1.1E-12 3.9E-17 121.2 14.7 149 19-185 14-165 (220)
118 2xot_A Amphoterin-induced prot 99.4 1.1E-12 3.8E-17 130.6 14.2 151 19-188 21-179 (361)
119 2ell_A Acidic leucine-rich nuc 99.4 5.2E-13 1.8E-17 117.8 10.3 135 37-190 23-165 (168)
120 4b8c_D Glucose-repressible alc 99.4 9.9E-13 3.4E-17 142.8 11.1 119 161-311 236-355 (727)
121 4b8c_D Glucose-repressible alc 99.4 1.8E-13 6.1E-18 148.7 3.3 133 38-189 173-310 (727)
122 2ell_A Acidic leucine-rich nuc 99.3 1.4E-12 4.9E-17 115.0 7.6 129 13-144 21-157 (168)
123 2je0_A Acidic leucine-rich nuc 99.3 2.3E-12 7.8E-17 111.2 7.0 125 15-142 16-148 (149)
124 2je0_A Acidic leucine-rich nuc 99.3 5.8E-12 2E-16 108.6 9.4 103 36-142 15-121 (149)
125 3sb4_A Hypothetical leucine ri 99.3 3.9E-12 1.3E-16 125.0 8.8 101 170-300 224-326 (329)
126 1w8a_A SLIT protein; signaling 99.3 2.5E-11 8.5E-16 109.6 12.7 126 115-286 12-141 (192)
127 2wfh_A SLIT homolog 2 protein 99.3 3.8E-11 1.3E-15 108.5 13.5 121 19-143 13-135 (193)
128 1a9n_A U2A', U2A'; complex (nu 99.3 6E-12 2.1E-16 111.9 8.1 131 36-186 17-154 (176)
129 2wfh_A SLIT homolog 2 protein 99.3 4.6E-11 1.6E-15 108.0 13.5 125 115-285 14-140 (193)
130 1w8a_A SLIT protein; signaling 99.2 4.5E-11 1.5E-15 107.9 12.6 122 18-143 10-135 (192)
131 1a9n_A U2A', U2A'; complex (nu 99.2 1.9E-11 6.4E-16 108.7 9.0 125 15-143 18-149 (176)
132 2o6r_A Variable lymphocyte rec 99.2 2.8E-10 9.5E-15 101.1 13.1 129 114-287 10-140 (177)
133 2o6r_A Variable lymphocyte rec 99.1 8E-10 2.7E-14 98.1 13.7 121 18-143 9-133 (177)
134 3sb4_A Hypothetical leucine ri 99.1 4.6E-10 1.6E-14 110.1 12.1 227 17-278 50-328 (329)
135 1ds9_A Outer arm dynein; leuci 99.0 2.9E-12 9.9E-17 116.3 -6.5 18 245-262 137-154 (198)
136 2r9u_A Variable lymphocyte rec 99.0 1.5E-09 5E-14 96.3 10.5 62 226-287 58-121 (174)
137 1ds9_A Outer arm dynein; leuci 99.0 4.6E-12 1.6E-16 115.0 -7.3 61 225-286 93-155 (198)
138 4fdw_A Leucine rich hypothetic 98.9 7.2E-08 2.5E-12 97.1 21.5 240 17-300 114-375 (401)
139 3g39_A Variable lymphocyte rec 98.9 8.8E-09 3E-13 90.8 11.1 76 18-95 11-89 (170)
140 2r9u_A Variable lymphocyte rec 98.9 9.2E-09 3.2E-13 91.1 11.2 75 19-95 15-92 (174)
141 4fs7_A Uncharacterized protein 98.9 1.2E-07 4.2E-12 95.1 20.8 296 26-344 57-391 (394)
142 4fdw_A Leucine rich hypothetic 98.8 2.4E-07 8.1E-12 93.3 20.8 229 37-310 112-358 (401)
143 3g39_A Variable lymphocyte rec 98.8 2.5E-08 8.6E-13 87.8 11.0 99 40-143 11-111 (170)
144 4fs7_A Uncharacterized protein 98.8 3.2E-07 1.1E-11 92.1 19.8 275 50-344 59-369 (394)
145 3un9_A NLR family member X1; l 98.7 1.6E-09 5.5E-14 108.1 -1.1 41 245-285 208-253 (372)
146 2ifg_A High affinity nerve gro 98.6 8.6E-08 2.9E-12 94.4 10.2 106 152-287 12-119 (347)
147 4gt6_A Cell surface protein; l 98.6 7E-06 2.4E-10 82.2 21.9 269 28-308 51-368 (394)
148 3un9_A NLR family member X1; l 98.6 1.1E-08 3.6E-13 102.1 0.9 149 38-186 72-253 (372)
149 2ifg_A High affinity nerve gro 98.4 4E-07 1.4E-11 89.5 9.0 73 21-94 13-90 (347)
150 4h09_A Hypothetical leucine ri 98.3 6.1E-05 2.1E-09 74.7 22.1 95 205-300 237-338 (379)
151 4gt6_A Cell surface protein; l 98.2 5.3E-05 1.8E-09 75.7 19.1 269 17-300 65-383 (394)
152 4h09_A Hypothetical leucine ri 98.2 3.8E-05 1.3E-09 76.3 16.4 97 203-300 212-315 (379)
153 2ra8_A Uncharacterized protein 98.1 2.5E-06 8.5E-11 84.4 6.2 58 36-95 137-204 (362)
154 3e4g_A ATP synthase subunit S, 98.0 3.3E-06 1.1E-10 74.2 3.6 68 30-97 52-127 (176)
155 2ra8_A Uncharacterized protein 98.0 2.3E-06 7.7E-11 84.7 2.7 158 11-186 135-321 (362)
156 1io0_A Tropomodulin; LRR prote 97.6 2.2E-05 7.4E-10 69.9 2.5 42 243-284 116-164 (185)
157 1io0_A Tropomodulin; LRR prote 97.5 6.4E-06 2.2E-10 73.4 -1.6 64 244-310 89-164 (185)
158 3rw6_A Nuclear RNA export fact 97.5 8E-06 2.7E-10 77.0 -1.9 41 243-284 191-233 (267)
159 3e4g_A ATP synthase subunit S, 97.5 1.1E-05 3.7E-10 70.8 -1.4 87 248-344 61-153 (176)
160 3rw6_A Nuclear RNA export fact 97.0 9.5E-05 3.2E-09 69.6 0.1 63 245-311 167-234 (267)
161 3rfe_A Platelet glycoprotein I 95.2 0.012 4.2E-07 48.6 3.4 44 239-284 24-68 (130)
162 3rfe_A Platelet glycoprotein I 94.8 0.044 1.5E-06 45.2 5.9 52 20-72 12-66 (130)
163 1pgv_A TMD-1, tropomodulin TMD 93.6 0.012 4.3E-07 52.2 -0.1 34 248-281 98-136 (197)
164 1pgv_A TMD-1, tropomodulin TMD 90.7 0.043 1.5E-06 48.7 -0.2 81 224-307 40-136 (197)
165 2lz0_A Uncharacterized protein 24.9 99 0.0034 23.4 4.7 36 56-93 15-52 (100)
166 2lz0_A Uncharacterized protein 21.4 1E+02 0.0036 23.2 4.2 13 244-256 39-51 (100)
No 1
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.96 E-value=6.1e-30 Score=274.93 Aligned_cols=275 Identities=15% Similarity=0.154 Sum_probs=217.6
Q ss_pred CCCCCC-CCCCceEEECCCCCCcc------------------cccccC--CCCCCcEEEccCCCCCCCCC-CCCCCCCCc
Q 047943 30 TLPSNF-EPENLLELNLPYSKIET------------------IWEVKK--EAPKLKYINLHNSQYLTGMP-DLSETPNLE 87 (479)
Q Consensus 30 ~lp~~~-~~~~L~~L~L~~s~i~~------------------l~~~~~--~l~~L~~L~Ls~~~~l~~~p-~l~~l~~L~ 87 (479)
.+|..+ ++++|++|+|++|.++. +|..++ ++++|+.|++++|.....+| .++++++|+
T Consensus 197 ~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 276 (636)
T 4eco_A 197 FVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQ 276 (636)
T ss_dssp EECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCC
T ss_pred cCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCC
Confidence 367766 88999999999999998 899988 99999999999998888888 589999999
Q ss_pred EEeecCCC-CCC-CCCcccccc---CCccccceeeccCCCceecCc--cccCCCCCCEEeccCCC---------CCCCCC
Q 047943 88 RLNILNCT-NLA-YIPSCIHNF---NNLRSVIGLCLRNTAIEEVPS--SIESLTKLEKLDLSYCT---------RLKGLC 151 (479)
Q Consensus 88 ~L~L~~c~-~l~-~~p~~l~~l---~~L~~L~~L~L~~~~i~~lp~--~i~~l~~L~~L~L~~c~---------~L~~L~ 151 (479)
+|++++|. ..+ .+|..++++ ..+++|++|++++|.+..+|. .++.+++|+.|++++|. ++++|+
T Consensus 277 ~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~ 356 (636)
T 4eco_A 277 LINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLA 356 (636)
T ss_dssp EEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEES
T ss_pred EEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCC
Confidence 99999987 434 588877765 455677889999999999998 89999999999998864 335678
Q ss_pred EEecCCCCCCCccchhhhcccc-CCeeeccCccccccCccccccc--CCCC-----------CCCCCC-------CCCCC
Q 047943 152 KLDLGYCSKFECFPEIIEKMER-LRSVDLQSTEVEELPSSMENLE--GLKD-----------LPDSLP-------NLKSL 210 (479)
Q Consensus 152 ~L~L~~c~~l~~~p~~~~~l~~-L~~L~L~~~~i~~lp~~i~~l~--~L~~-----------lp~~l~-------~l~~L 210 (479)
+|++++|... .+|..+.++++ |++|++++|.+.++|..+..+. +|+. +|..+. .+.+|
T Consensus 357 ~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L 435 (636)
T 4eco_A 357 SLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINV 435 (636)
T ss_dssp EEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCE
T ss_pred EEECCCCccc-cccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCC
Confidence 9999987654 88888889998 9999999999998888765543 3333 455566 66788
Q ss_pred CeeecCC--Ccc-----ccccCCCceeecCCCCCCCCCcccCCC--------CCCCEEEcCCCCCccCCccCC--CCCCC
Q 047943 211 QFLNVER--LFS-----IADLDKLEDLSISGRRGLILPPLLSGL--------SSLTKLVLTCCDVIEIPQDIG--CLSSL 273 (479)
Q Consensus 211 ~~L~l~~--l~~-----l~~l~~L~~L~l~~~~~~~lp~~~~~l--------~~L~~L~L~~~~l~~lp~~l~--~l~~L 273 (479)
++|++++ +.. +..+++|++|++++|....+|...... ++|+.|++++|.+.++|..+. .+++|
T Consensus 436 ~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L 515 (636)
T 4eco_A 436 SSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYL 515 (636)
T ss_dssp EEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTC
T ss_pred CEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccCCCc
Confidence 8888877 222 234778888888888866776643322 278888888888888888776 88888
Q ss_pred CEEeCCCCcCCccChhhhcCCCchhHHHHHhhhhh
Q 047943 274 ELLFLCGNNFSKFTCKYQSTFTAEKTLLELLQYAT 308 (479)
Q Consensus 274 ~~L~Ls~n~l~~lp~~~i~~l~~L~~L~~~L~~n~ 308 (479)
+.|+|++|.++.+| ..+..+++|+.| ++++|+
T Consensus 516 ~~L~Ls~N~l~~ip-~~~~~l~~L~~L--~Ls~N~ 547 (636)
T 4eco_A 516 VGIDLSYNSFSKFP-TQPLNSSTLKGF--GIRNQR 547 (636)
T ss_dssp CEEECCSSCCSSCC-CGGGGCSSCCEE--ECCSCB
T ss_pred CEEECCCCCCCCcC-hhhhcCCCCCEE--ECCCCc
Confidence 88888888888888 778888888888 665544
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.96 E-value=4.7e-29 Score=273.77 Aligned_cols=191 Identities=19% Similarity=0.224 Sum_probs=106.2
Q ss_pred ecCCccCCCccCceEEEecCCCCC-CCCCCC-CCCCceEEECCCCCCc-ccccc-cCCCCCCcEEEccCCCCCCCCC-CC
Q 047943 6 HIDQSLEYLPEELRYLHWYEYPLK-TLPSNF-EPENLLELNLPYSKIE-TIWEV-KKEAPKLKYINLHNSQYLTGMP-DL 80 (479)
Q Consensus 6 ~~~~~~~~l~~~Lr~L~~~~~~l~-~lp~~~-~~~~L~~L~L~~s~i~-~l~~~-~~~l~~L~~L~Ls~~~~l~~~p-~l 80 (479)
.+|..+.....+|++|++++|.+. .+|..| .+++|++|++++|++. .+|.. +..+++|+.|++++|.....+| .+
T Consensus 284 ~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l 363 (768)
T 3rgz_A 284 EIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESL 363 (768)
T ss_dssp SCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTH
T ss_pred ccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHH
Confidence 356666665348999999988876 567666 7888999999888887 67755 7888888888888886654555 34
Q ss_pred CCCC-CCcEEeecCCCCCCCCCccccccCCccccceeeccCCCce-ecCccccCCCCCCEEeccCCC----------CCC
Q 047943 81 SETP-NLERLNILNCTNLAYIPSCIHNFNNLRSVIGLCLRNTAIE-EVPSSIESLTKLEKLDLSYCT----------RLK 148 (479)
Q Consensus 81 ~~l~-~L~~L~L~~c~~l~~~p~~l~~l~~L~~L~~L~L~~~~i~-~lp~~i~~l~~L~~L~L~~c~----------~L~ 148 (479)
..++ +|++|++++|...+.+|..+.. ..++.|++|++++|.+. .+|..++.+++|+.|++++|. +++
T Consensus 364 ~~l~~~L~~L~Ls~N~l~~~~~~~~~~-~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 442 (768)
T 3rgz_A 364 TNLSASLLTLDLSSNNFSGPILPNLCQ-NPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLS 442 (768)
T ss_dssp HHHTTTCSEEECCSSEEEEECCTTTTC-STTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCT
T ss_pred HhhhcCCcEEEccCCCcCCCcChhhhh-cccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCC
Confidence 5554 6666666665544444433322 01222333444444443 334444444444444444431 233
Q ss_pred CCCEEecCCCCCCCccchhhhccccCCeeeccCccccc-cCcccccccCC
Q 047943 149 GLCKLDLGYCSKFECFPEIIEKMERLRSVDLQSTEVEE-LPSSMENLEGL 197 (479)
Q Consensus 149 ~L~~L~L~~c~~l~~~p~~~~~l~~L~~L~L~~~~i~~-lp~~i~~l~~L 197 (479)
+|+.|++++|...+.+|..++.+++|++|++++|.+.+ +|..++++++|
T Consensus 443 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L 492 (768)
T 3rgz_A 443 KLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNL 492 (768)
T ss_dssp TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTC
T ss_pred CCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCC
Confidence 44444444444444444444444444444444444442 33344444433
No 3
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.96 E-value=5.5e-28 Score=258.23 Aligned_cols=139 Identities=18% Similarity=0.215 Sum_probs=76.8
Q ss_pred ccccCCeeeccCcccccc---CcccccccCCCC----------CCCCCCCCCCCCeeecCCC--------ccccccCCCc
Q 047943 170 KMERLRSVDLQSTEVEEL---PSSMENLEGLKD----------LPDSLPNLKSLQFLNVERL--------FSIADLDKLE 228 (479)
Q Consensus 170 ~l~~L~~L~L~~~~i~~l---p~~i~~l~~L~~----------lp~~l~~l~~L~~L~l~~l--------~~l~~l~~L~ 228 (479)
.+++|++|++++|.+..+ |..+..+++|+. +|..+..+++|+.|++++. ..+..+++|+
T Consensus 348 ~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 427 (606)
T 3vq2_A 348 ALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLL 427 (606)
T ss_dssp CCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCC
T ss_pred cCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCC
Confidence 445555555555555543 444555555544 3455556666666666551 2445556666
Q ss_pred eeecCCCCC-CCCCcccCCCCCCCEEEcCCCCCcc--CCccCCCCCCCCEEeCCCCcCCccChhhhcCCCchhHHHHHhh
Q 047943 229 DLSISGRRG-LILPPLLSGLSSLTKLVLTCCDVIE--IPQDIGCLSSLELLFLCGNNFSKFTCKYQSTFTAEKTLLELLQ 305 (479)
Q Consensus 229 ~L~l~~~~~-~~lp~~~~~l~~L~~L~L~~~~l~~--lp~~l~~l~~L~~L~Ls~n~l~~lp~~~i~~l~~L~~L~~~L~ 305 (479)
.|++++|.. ...|..+..+++|++|++++|.+.+ +|..++.+++|+.|++++|.++.++...+..+++|+.| +++
T Consensus 428 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L--~Ls 505 (606)
T 3vq2_A 428 YLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLL--NMS 505 (606)
T ss_dssp EEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE--ECC
T ss_pred EEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEE--ECC
Confidence 666666653 2344445555666666666665554 45555666666666666666554432455556666666 666
Q ss_pred hhhhh
Q 047943 306 YATVI 310 (479)
Q Consensus 306 ~n~~~ 310 (479)
+|.+.
T Consensus 506 ~N~l~ 510 (606)
T 3vq2_A 506 HNNLL 510 (606)
T ss_dssp SSCCS
T ss_pred CCcCC
Confidence 65554
No 4
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.96 E-value=1.2e-28 Score=270.75 Aligned_cols=274 Identities=16% Similarity=0.158 Sum_probs=216.5
Q ss_pred CCCCC-CCCCceEEECCCCCCcc------------------cccccC--CCCCCcEEEccCCCCCCCCC-CCCCCCCCcE
Q 047943 31 LPSNF-EPENLLELNLPYSKIET------------------IWEVKK--EAPKLKYINLHNSQYLTGMP-DLSETPNLER 88 (479)
Q Consensus 31 lp~~~-~~~~L~~L~L~~s~i~~------------------l~~~~~--~l~~L~~L~Ls~~~~l~~~p-~l~~l~~L~~ 88 (479)
+|..+ .+++|++|+|++|++.. +|..++ .+++|+.|+|++|.....+| .+.++++|++
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~ 519 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS 519 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence 77777 89999999999999998 899888 99999999999999888888 5899999999
Q ss_pred EeecCCCCCC--CCCccccccC----CccccceeeccCCCceecCc--cccCCCCCCEEeccCCC--------CCCCCCE
Q 047943 89 LNILNCTNLA--YIPSCIHNFN----NLRSVIGLCLRNTAIEEVPS--SIESLTKLEKLDLSYCT--------RLKGLCK 152 (479)
Q Consensus 89 L~L~~c~~l~--~~p~~l~~l~----~L~~L~~L~L~~~~i~~lp~--~i~~l~~L~~L~L~~c~--------~L~~L~~ 152 (479)
|++++|..+. .+|..++++. .+++|+.|++++|.+..+|. .++.+++|+.|++++|. ++++|+.
T Consensus 520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~ 599 (876)
T 4ecn_A 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTD 599 (876)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCCCCCTTSEESE
T ss_pred EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccchhhcCCCcceE
Confidence 9999987343 5787776554 66778889999999999998 89999999999998863 5677899
Q ss_pred EecCCCCCCCccchhhhcccc-CCeeeccCccccccCcccccccC--CCC--------------CCCCCC--CCCCCCee
Q 047943 153 LDLGYCSKFECFPEIIEKMER-LRSVDLQSTEVEELPSSMENLEG--LKD--------------LPDSLP--NLKSLQFL 213 (479)
Q Consensus 153 L~L~~c~~l~~~p~~~~~l~~-L~~L~L~~~~i~~lp~~i~~l~~--L~~--------------lp~~l~--~l~~L~~L 213 (479)
|++++|... .+|..+.++++ |+.|++++|.+..+|..+..+.. |+. ++..+. .+.+|+.|
T Consensus 600 L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L 678 (876)
T 4ecn_A 600 LKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTV 678 (876)
T ss_dssp EECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEE
T ss_pred EECcCCccc-cchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEE
Confidence 999998766 88988999998 99999999999998877655432 322 112222 23478888
Q ss_pred ecCC--Cccc-----cccCCCceeecCCCCCCCCCcccCCC--------CCCCEEEcCCCCCccCCccCC--CCCCCCEE
Q 047943 214 NVER--LFSI-----ADLDKLEDLSISGRRGLILPPLLSGL--------SSLTKLVLTCCDVIEIPQDIG--CLSSLELL 276 (479)
Q Consensus 214 ~l~~--l~~l-----~~l~~L~~L~l~~~~~~~lp~~~~~l--------~~L~~L~L~~~~l~~lp~~l~--~l~~L~~L 276 (479)
++++ +..+ ..+++|+.|++++|....+|..+... ++|+.|+|++|.+.++|..+. .+++|+.|
T Consensus 679 ~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L 758 (876)
T 4ecn_A 679 TLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNM 758 (876)
T ss_dssp ECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEE
T ss_pred EccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccchHHhhhccCCCcCEE
Confidence 8877 2222 35678888888888766777654332 278888888888888887776 78888888
Q ss_pred eCCCCcCCccChhhhcCCCchhHHHHHhhhhh
Q 047943 277 FLCGNNFSKFTCKYQSTFTAEKTLLELLQYAT 308 (479)
Q Consensus 277 ~Ls~n~l~~lp~~~i~~l~~L~~L~~~L~~n~ 308 (479)
+|++|.++.+| ..+..+++|+.| +|++|+
T Consensus 759 ~Ls~N~L~~lp-~~l~~L~~L~~L--~Ls~N~ 787 (876)
T 4ecn_A 759 DVSYNCFSSFP-TQPLNSSQLKAF--GIRHQR 787 (876)
T ss_dssp ECCSSCCSSCC-CGGGGCTTCCEE--ECCCCB
T ss_pred EeCCCCCCccc-hhhhcCCCCCEE--ECCCCC
Confidence 88888888888 778888888888 666544
No 5
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.96 E-value=8.4e-28 Score=263.81 Aligned_cols=306 Identities=22% Similarity=0.290 Sum_probs=202.8
Q ss_pred CCccCceEEEecCCCCCCCCCCC-CCCCceEEECCCCCCc-ccccccCCCCCCcEEEccCCCCCCCCCCCCCCCCCcEEe
Q 047943 13 YLPEELRYLHWYEYPLKTLPSNF-EPENLLELNLPYSKIE-TIWEVKKEAPKLKYINLHNSQYLTGMPDLSETPNLERLN 90 (479)
Q Consensus 13 ~l~~~Lr~L~~~~~~l~~lp~~~-~~~~L~~L~L~~s~i~-~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~ 90 (479)
.++ +|++|+++++.+...++.+ .+++|++|++++|++. .++..++.+++|+.|++++|.....+|.. .+++|++|+
T Consensus 198 ~l~-~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~-~l~~L~~L~ 275 (768)
T 3rgz_A 198 RCV-NLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL-PLKSLQYLS 275 (768)
T ss_dssp TCT-TCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC-CCTTCCEEE
T ss_pred cCC-cCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc-ccCCCCEEE
Confidence 344 6777777777776543335 6777788888777776 45667777777888888777665555554 677777777
Q ss_pred ecCCCCCCCCCccccccCCccccceeeccCCCce-ecCccccCCCCCCEEeccCCC-----------CCCCCCEEecCCC
Q 047943 91 ILNCTNLAYIPSCIHNFNNLRSVIGLCLRNTAIE-EVPSSIESLTKLEKLDLSYCT-----------RLKGLCKLDLGYC 158 (479)
Q Consensus 91 L~~c~~l~~~p~~l~~l~~L~~L~~L~L~~~~i~-~lp~~i~~l~~L~~L~L~~c~-----------~L~~L~~L~L~~c 158 (479)
+++|...+.+|..+... ++.|++|++++|.+. .+|..++.+++|+.|++++|. ++++|++|++++|
T Consensus 276 L~~n~l~~~ip~~~~~~--~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n 353 (768)
T 3rgz_A 276 LAENKFTGEIPDFLSGA--CDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFN 353 (768)
T ss_dssp CCSSEEEESCCCCSCTT--CTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSS
T ss_pred CcCCccCCccCHHHHhh--cCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCC
Confidence 77776655666665443 244556788888776 567777888888888877652 5667788888877
Q ss_pred CCCCccchhhhccc-cCCeeeccCccccc-cCccccc--ccCCCC-----------CCCCCCCCCCCCeeecCCC-----
Q 047943 159 SKFECFPEIIEKME-RLRSVDLQSTEVEE-LPSSMEN--LEGLKD-----------LPDSLPNLKSLQFLNVERL----- 218 (479)
Q Consensus 159 ~~l~~~p~~~~~l~-~L~~L~L~~~~i~~-lp~~i~~--l~~L~~-----------lp~~l~~l~~L~~L~l~~l----- 218 (479)
...+.+|..+.++. +|++|++++|.+.+ +|..+.. +++|+. +|..+.++++|+.|++++.
T Consensus 354 ~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 433 (768)
T 3rgz_A 354 EFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGT 433 (768)
T ss_dssp EEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESC
T ss_pred ccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCc
Confidence 76667777777776 77777777776664 4444433 344443 5666667777777777661
Q ss_pred --ccccccCCCceeecCCCCC-CCCCcccCCCCCCCEEEcCCCCCcc-CCccCCCCCCCCEEeCCCCcCC-ccChhhhcC
Q 047943 219 --FSIADLDKLEDLSISGRRG-LILPPLLSGLSSLTKLVLTCCDVIE-IPQDIGCLSSLELLFLCGNNFS-KFTCKYQST 293 (479)
Q Consensus 219 --~~l~~l~~L~~L~l~~~~~-~~lp~~~~~l~~L~~L~L~~~~l~~-lp~~l~~l~~L~~L~Ls~n~l~-~lp~~~i~~ 293 (479)
..++.+++|+.|++++|.. ..+|..+..+++|++|++++|.+.+ +|..++.+++|++|++++|+++ .+| ..++.
T Consensus 434 ~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p-~~~~~ 512 (768)
T 3rgz_A 434 IPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIP-KWIGR 512 (768)
T ss_dssp CCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCC-GGGGG
T ss_pred ccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCC-hHHhc
Confidence 3456667777777777763 3566666667777777777777665 6666777777777777777766 566 66677
Q ss_pred CCchhHHHHHhhhhhhhhccCCccccCCCccccc
Q 047943 294 FTAEKTLLELLQYATVITRASSSSTLFSCNELQA 327 (479)
Q Consensus 294 l~~L~~L~~~L~~n~~~~~~~~~~~l~~C~~L~~ 327 (479)
+++|++| ++++|.+.+.. +..+.+|++|+.
T Consensus 513 l~~L~~L--~L~~N~l~~~~--p~~l~~l~~L~~ 542 (768)
T 3rgz_A 513 LENLAIL--KLSNNSFSGNI--PAELGDCRSLIW 542 (768)
T ss_dssp CTTCCEE--ECCSSCCEEEC--CGGGGGCTTCCE
T ss_pred CCCCCEE--ECCCCcccCcC--CHHHcCCCCCCE
Confidence 7777777 77777664322 224444555443
No 6
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.95 E-value=2.8e-27 Score=252.79 Aligned_cols=302 Identities=21% Similarity=0.197 Sum_probs=188.6
Q ss_pred CccCceEEEecCCCCCCCCC-CC-CCCCceEEECCCCCCccc-ccccCCCCCCcEEEccCCCCCCCCC-CCCCCCCCcEE
Q 047943 14 LPEELRYLHWYEYPLKTLPS-NF-EPENLLELNLPYSKIETI-WEVKKEAPKLKYINLHNSQYLTGMP-DLSETPNLERL 89 (479)
Q Consensus 14 l~~~Lr~L~~~~~~l~~lp~-~~-~~~~L~~L~L~~s~i~~l-~~~~~~l~~L~~L~Ls~~~~l~~~p-~l~~l~~L~~L 89 (479)
+|.+++.|+++++.++.++. .| .+++|++|++++|+++.+ +..++.+++|++|++++|......| .|+++++|++|
T Consensus 30 ~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 109 (606)
T 3vq2_A 30 IPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENL 109 (606)
T ss_dssp SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEE
T ss_pred CCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEE
Confidence 44567777777777766655 34 667777777777776665 3456667777777777665444334 46666666666
Q ss_pred eecCCCCCCCCCccccccCCccccceeeccCCCce--ecCccccCCCCCCEEeccCCC----------------------
Q 047943 90 NILNCTNLAYIPSCIHNFNNLRSVIGLCLRNTAIE--EVPSSIESLTKLEKLDLSYCT---------------------- 145 (479)
Q Consensus 90 ~L~~c~~l~~~p~~l~~l~~L~~L~~L~L~~~~i~--~lp~~i~~l~~L~~L~L~~c~---------------------- 145 (479)
++++|......+..++++ ++|++|++++|.+. ++|..++.+++|++|+++++.
T Consensus 110 ~L~~n~l~~~~~~~~~~l---~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L 186 (606)
T 3vq2_A 110 VAVETKLASLESFPIGQL---ITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSL 186 (606)
T ss_dssp ECTTSCCCCSSSSCCTTC---TTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEE
T ss_pred EccCCccccccccccCCC---CCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhcccccccee
Confidence 666654433333333333 33344555555554 345555555555555555431
Q ss_pred --------------------------------------------------------------------------------
Q 047943 146 -------------------------------------------------------------------------------- 145 (479)
Q Consensus 146 -------------------------------------------------------------------------------- 145 (479)
T Consensus 187 ~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l 266 (606)
T 3vq2_A 187 DMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEF 266 (606)
T ss_dssp ECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEE
T ss_pred eccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhhe
Confidence
Q ss_pred --------------------------------------CCCCCCEEecCCCCCCCccchhhhccccCCeeeccCccccc-
Q 047943 146 --------------------------------------RLKGLCKLDLGYCSKFECFPEIIEKMERLRSVDLQSTEVEE- 186 (479)
Q Consensus 146 --------------------------------------~L~~L~~L~L~~c~~l~~~p~~~~~l~~L~~L~L~~~~i~~- 186 (479)
.+++|++|++++|.. +.+|.. .+++|++|++++|....
T Consensus 267 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l-~~lp~~--~l~~L~~L~l~~n~~~~~ 343 (606)
T 3vq2_A 267 RLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQL-KQFPTL--DLPFLKSLTLTMNKGSIS 343 (606)
T ss_dssp EECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCC-SSCCCC--CCSSCCEEEEESCSSCEE
T ss_pred eccccccccccccccccCCCCCEEEecCccchhhhhccccccCCEEEcccccC-cccccC--CCCccceeeccCCcCccc
Confidence 111233344444333 334422 55556666666653222
Q ss_pred cCcccccccCCCC-------------CCCCCCCCCCCCeeecCCC------ccccccCCCceeecCCCCCCCC-C-cccC
Q 047943 187 LPSSMENLEGLKD-------------LPDSLPNLKSLQFLNVERL------FSIADLDKLEDLSISGRRGLIL-P-PLLS 245 (479)
Q Consensus 187 lp~~i~~l~~L~~-------------lp~~l~~l~~L~~L~l~~l------~~l~~l~~L~~L~l~~~~~~~l-p-~~~~ 245 (479)
+ .+..+++|+. +|..+..+++|++|++++. ..+..+++|+.|++++|..... | ..+.
T Consensus 344 ~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 421 (606)
T 3vq2_A 344 F--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFL 421 (606)
T ss_dssp C--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTT
T ss_pred h--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhh
Confidence 2 3445565554 2555667788888888872 4566788888888888874443 3 3577
Q ss_pred CCCCCCEEEcCCCCCcc-CCccCCCCCCCCEEeCCCCcCCc--cChhhhcCCCchhHHHHHhhhhhhhhccCCccccCCC
Q 047943 246 GLSSLTKLVLTCCDVIE-IPQDIGCLSSLELLFLCGNNFSK--FTCKYQSTFTAEKTLLELLQYATVITRASSSSTLFSC 322 (479)
Q Consensus 246 ~l~~L~~L~L~~~~l~~-lp~~l~~l~~L~~L~Ls~n~l~~--lp~~~i~~l~~L~~L~~~L~~n~~~~~~~~~~~l~~C 322 (479)
.+++|+.|++++|.+.+ .|..++.+++|+.|++++|.++. +| ..++.+++|+.| ++++|.+.+... ..+.++
T Consensus 422 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~~l~~L~~L--~Ls~n~l~~~~~--~~~~~l 496 (606)
T 3vq2_A 422 SLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLS-NVFANTTNLTFL--DLSKCQLEQISW--GVFDTL 496 (606)
T ss_dssp TCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEEC-SCCTTCTTCCEE--ECTTSCCCEECT--TTTTTC
T ss_pred ccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchH-HhhccCCCCCEE--ECCCCcCCccCh--hhhccc
Confidence 88888888888888887 77778888888888888888775 56 778888888888 888887754322 245566
Q ss_pred cccccc
Q 047943 323 NELQAA 328 (479)
Q Consensus 323 ~~L~~l 328 (479)
++|+.+
T Consensus 497 ~~L~~L 502 (606)
T 3vq2_A 497 HRLQLL 502 (606)
T ss_dssp TTCCEE
T ss_pred ccCCEE
Confidence 666654
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.95 E-value=1.1e-26 Score=248.18 Aligned_cols=314 Identities=18% Similarity=0.166 Sum_probs=209.4
Q ss_pred CCccCCCccCceEEEecCCCCCCC-CCCC-CCCCceEEECCCCCCccc-ccccCCCCCCcEEEccCCCCCCCCC-CCCCC
Q 047943 8 DQSLEYLPEELRYLHWYEYPLKTL-PSNF-EPENLLELNLPYSKIETI-WEVKKEAPKLKYINLHNSQYLTGMP-DLSET 83 (479)
Q Consensus 8 ~~~~~~l~~~Lr~L~~~~~~l~~l-p~~~-~~~~L~~L~L~~s~i~~l-~~~~~~l~~L~~L~Ls~~~~l~~~p-~l~~l 83 (479)
|..+..++ +||+|+++++.+..+ |..| .+++|++|++++|++..+ +..++.+++|+.|++++|......+ .++++
T Consensus 50 ~~~~~~l~-~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l 128 (606)
T 3t6q_A 50 NTTFSRLI-NLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQ 128 (606)
T ss_dssp TTTSTTCT-TCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTC
T ss_pred hhHhccCc-cceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccC
Confidence 45566666 677777777777665 4445 677777777777777654 4566777777777777765333222 46666
Q ss_pred CCCcEEeecCCCCCCCCCccccccCCccccceeeccCCCceec-CccccCCCCCC-------------------------
Q 047943 84 PNLERLNILNCTNLAYIPSCIHNFNNLRSVIGLCLRNTAIEEV-PSSIESLTKLE------------------------- 137 (479)
Q Consensus 84 ~~L~~L~L~~c~~l~~~p~~l~~l~~L~~L~~L~L~~~~i~~l-p~~i~~l~~L~------------------------- 137 (479)
++|++|++++|.........+.. +++|++|++++|.+..+ +..++.+++|+
T Consensus 129 ~~L~~L~L~~n~l~~~~~~~~~~---l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~ 205 (606)
T 3t6q_A 129 KTLESLYLGSNHISSIKLPKGFP---TEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQ 205 (606)
T ss_dssp TTCCEEECCSSCCCCCCCCTTCC---CTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEE
T ss_pred CcccEEECCCCcccccCcccccC---CcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhcccc
Confidence 67777777665443311122211 23333344444444433 22233333333
Q ss_pred ----------------------------------------------------EEeccCC----------CCCCCCCEEec
Q 047943 138 ----------------------------------------------------KLDLSYC----------TRLKGLCKLDL 155 (479)
Q Consensus 138 ----------------------------------------------------~L~L~~c----------~~L~~L~~L~L 155 (479)
.|+++++ .++++|++|++
T Consensus 206 ~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 285 (606)
T 3t6q_A 206 SLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDL 285 (606)
T ss_dssp EEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEEC
T ss_pred ccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEec
Confidence 3333332 24567888999
Q ss_pred CCCCCCCccchhhhccccCCeeeccCcccccc-CcccccccCCCC-----------CC-CCCCCCCCCCeeecCC--C--
Q 047943 156 GYCSKFECFPEIIEKMERLRSVDLQSTEVEEL-PSSMENLEGLKD-----------LP-DSLPNLKSLQFLNVER--L-- 218 (479)
Q Consensus 156 ~~c~~l~~~p~~~~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~-----------lp-~~l~~l~~L~~L~l~~--l-- 218 (479)
++|. +..+|..+.++++|++|++++|.+.++ |..+..+++|+. +| ..+.++++|++|++++ +
T Consensus 286 ~~n~-l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 364 (606)
T 3t6q_A 286 TATH-LSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIET 364 (606)
T ss_dssp TTSC-CSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCE
T ss_pred cCCc-cCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCcccc
Confidence 8875 457888888899999999999998885 557777777765 22 3477889999999987 2
Q ss_pred -----ccccccCCCceeecCCCCC-CCCCcccCCCCCCCEEEcCCCCCcc-CC-ccCCCCCCCCEEeCCCCcCCccChhh
Q 047943 219 -----FSIADLDKLEDLSISGRRG-LILPPLLSGLSSLTKLVLTCCDVIE-IP-QDIGCLSSLELLFLCGNNFSKFTCKY 290 (479)
Q Consensus 219 -----~~l~~l~~L~~L~l~~~~~-~~lp~~~~~l~~L~~L~L~~~~l~~-lp-~~l~~l~~L~~L~Ls~n~l~~lp~~~ 290 (479)
..+..+++|++|++++|.. ...|..+..+++|++|++++|.+.+ .+ ..+..+++|+.|++++|.++.++...
T Consensus 365 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 444 (606)
T 3t6q_A 365 SDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQL 444 (606)
T ss_dssp EEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTT
T ss_pred ccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHH
Confidence 2467789999999999885 3446677888999999999998887 33 44788999999999999988654367
Q ss_pred hcCCCchhHHHHHhhhhhhhhcc-CCccccCCCcccccc
Q 047943 291 QSTFTAEKTLLELLQYATVITRA-SSSSTLFSCNELQAA 328 (479)
Q Consensus 291 i~~l~~L~~L~~~L~~n~~~~~~-~~~~~l~~C~~L~~l 328 (479)
+..+++|++| ++++|.+.+.. .....+.++++|+.+
T Consensus 445 ~~~l~~L~~L--~L~~n~l~~~~~~~~~~~~~l~~L~~L 481 (606)
T 3t6q_A 445 FDGLPALQHL--NLQGNHFPKGNIQKTNSLQTLGRLEIL 481 (606)
T ss_dssp TTTCTTCCEE--ECTTCBCGGGEECSSCGGGGCTTCCEE
T ss_pred HhCCCCCCEE--ECCCCCCCccccccchhhccCCCccEE
Confidence 8889999999 99999876522 222345566666654
No 8
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.95 E-value=2.2e-27 Score=244.63 Aligned_cols=310 Identities=19% Similarity=0.210 Sum_probs=207.7
Q ss_pred CccCceEEEecCCCCCCC-CCCC-CCCCceEEECCCCCCc-cc-ccccCCCCCCcEEEccCCCCCCCCC-CCCCCCCCcE
Q 047943 14 LPEELRYLHWYEYPLKTL-PSNF-EPENLLELNLPYSKIE-TI-WEVKKEAPKLKYINLHNSQYLTGMP-DLSETPNLER 88 (479)
Q Consensus 14 l~~~Lr~L~~~~~~l~~l-p~~~-~~~~L~~L~L~~s~i~-~l-~~~~~~l~~L~~L~Ls~~~~l~~~p-~l~~l~~L~~ 88 (479)
+|++|++|+++++.++.+ |..| .+++|++|++++|.+. .+ +..+..+++|++|++++|......| .+.++++|++
T Consensus 28 l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 107 (455)
T 3v47_A 28 LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEV 107 (455)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCE
T ss_pred CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCE
Confidence 567899999999999887 5556 8999999999999886 45 4668999999999999998666556 5899999999
Q ss_pred EeecCCCCCCCCCccccccCCccccceeeccCCCceec-Ccc-ccCCCCCCEEeccCCC----------CC--CCCCEEe
Q 047943 89 LNILNCTNLAYIPSCIHNFNNLRSVIGLCLRNTAIEEV-PSS-IESLTKLEKLDLSYCT----------RL--KGLCKLD 154 (479)
Q Consensus 89 L~L~~c~~l~~~p~~l~~l~~L~~L~~L~L~~~~i~~l-p~~-i~~l~~L~~L~L~~c~----------~L--~~L~~L~ 154 (479)
|++++|...+..+.. ..+.+++.|++|++++|.+..+ |.. ++.+++|+.|+++++. ++ .+|+.|+
T Consensus 108 L~L~~n~l~~~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~ 186 (455)
T 3v47_A 108 LTLTQCNLDGAVLSG-NFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLR 186 (455)
T ss_dssp EECTTSCCBTHHHHS-STTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEE
T ss_pred EeCCCCCCCccccCc-ccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccc
Confidence 999998755433332 1244566677799999999877 444 8899999999998864 11 3456666
Q ss_pred cCCCCCCCccchh--------hhccccCCeeeccCccccc-cCcccccc---cCCCCC---------------------C
Q 047943 155 LGYCSKFECFPEI--------IEKMERLRSVDLQSTEVEE-LPSSMENL---EGLKDL---------------------P 201 (479)
Q Consensus 155 L~~c~~l~~~p~~--------~~~l~~L~~L~L~~~~i~~-lp~~i~~l---~~L~~l---------------------p 201 (479)
+++|.....-+.. +..+++|++|++++|.+.+ .|..+... .+|+.+ +
T Consensus 187 l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 266 (455)
T 3v47_A 187 LSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDN 266 (455)
T ss_dssp CTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCT
T ss_pred cccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcc
Confidence 6665543322211 2234566777777766654 33222211 111100 0
Q ss_pred CCCC--CCCCCCeeecCCC-------ccccccCCCceeecCCCCCCCC-CcccCCCCCCCEEEcCCCCCcc-CCccCCCC
Q 047943 202 DSLP--NLKSLQFLNVERL-------FSIADLDKLEDLSISGRRGLIL-PPLLSGLSSLTKLVLTCCDVIE-IPQDIGCL 270 (479)
Q Consensus 202 ~~l~--~l~~L~~L~l~~l-------~~l~~l~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~L~~~~l~~-lp~~l~~l 270 (479)
..+. ..++|+.|++++. ..++.+++|++|++++|..... |..+.++++|++|++++|.+.+ .|..++.+
T Consensus 267 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 346 (455)
T 3v47_A 267 FTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENL 346 (455)
T ss_dssp TTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTC
T ss_pred cccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCc
Confidence 0111 2356777777761 3456677777777777774433 4566777778888887777776 46667777
Q ss_pred CCCCEEeCCCCcCCccChhhhcCCCchhHHHHHhhhhhhhhccCCccccCCCcccccc
Q 047943 271 SSLELLFLCGNNFSKFTCKYQSTFTAEKTLLELLQYATVITRASSSSTLFSCNELQAA 328 (479)
Q Consensus 271 ~~L~~L~Ls~n~l~~lp~~~i~~l~~L~~L~~~L~~n~~~~~~~~~~~l~~C~~L~~l 328 (479)
++|++|+|++|.++.++...+..+++|++| ++++|.+.+... ..+..+++|+.+
T Consensus 347 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L--~L~~N~l~~~~~--~~~~~l~~L~~L 400 (455)
T 3v47_A 347 DKLEVLDLSYNHIRALGDQSFLGLPNLKEL--ALDTNQLKSVPD--GIFDRLTSLQKI 400 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEE--ECCSSCCSCCCT--TTTTTCTTCCEE
T ss_pred ccCCEEECCCCcccccChhhccccccccEE--ECCCCccccCCH--hHhccCCcccEE
Confidence 778888888777776632667777777777 777777653221 123455555544
No 9
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.95 E-value=4.6e-27 Score=233.60 Aligned_cols=271 Identities=20% Similarity=0.216 Sum_probs=190.2
Q ss_pred CCccCceEEEecCCCCCCCCCCCCCCCceEEECCCCCCcccccccCCCCCCcEEEccCCCCCCCCCCCCCCCCCcEEeec
Q 047943 13 YLPEELRYLHWYEYPLKTLPSNFEPENLLELNLPYSKIETIWEVKKEAPKLKYINLHNSQYLTGMPDLSETPNLERLNIL 92 (479)
Q Consensus 13 ~l~~~Lr~L~~~~~~l~~lp~~~~~~~L~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~ 92 (479)
.++ +|+.|+++++.++.+|....+++|++|++++|+++.++. +..+++|+.|++++|. ++.++.+..+++|++|+++
T Consensus 42 ~l~-~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~-i~~~~~~~~l~~L~~L~l~ 118 (347)
T 4fmz_A 42 ELE-SITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNK-ITDISALQNLTNLRELYLN 118 (347)
T ss_dssp HHT-TCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGGGTTCTTCSEEECT
T ss_pred hcc-cccEEEEeCCccccchhhhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCc-ccCchHHcCCCcCCEEECc
Confidence 344 789999999998888874488899999999998888876 8889999999999884 5567778889999999998
Q ss_pred CCCCCCCCCccccccCCccccceeeccCCCceecCccccCCCCCCEEeccCCC--------CCCCCCEEecCCCCCCCcc
Q 047943 93 NCTNLAYIPSCIHNFNNLRSVIGLCLRNTAIEEVPSSIESLTKLEKLDLSYCT--------RLKGLCKLDLGYCSKFECF 164 (479)
Q Consensus 93 ~c~~l~~~p~~l~~l~~L~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~--------~L~~L~~L~L~~c~~l~~~ 164 (479)
+|.. ..++. +..++.|+.|++++|.....+..+..+++|+.|++++|. .+++|++|++++|... .+
T Consensus 119 ~n~i-~~~~~----~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~-~~ 192 (347)
T 4fmz_A 119 EDNI-SDISP----LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIE-DI 192 (347)
T ss_dssp TSCC-CCCGG----GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCC-CC
T ss_pred CCcc-cCchh----hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCccc-cc
Confidence 8754 33333 556666777889888655444458888888888888764 5667888888887544 34
Q ss_pred chhhhccccCCeeeccCccccccCcccccccCCCCCCCCCCCCCCCCeeecCC-----CccccccCCCceeecCCCCCCC
Q 047943 165 PEIIEKMERLRSVDLQSTEVEELPSSMENLEGLKDLPDSLPNLKSLQFLNVER-----LFSIADLDKLEDLSISGRRGLI 239 (479)
Q Consensus 165 p~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~lp~~l~~l~~L~~L~l~~-----l~~l~~l~~L~~L~l~~~~~~~ 239 (479)
+. +..+++|+.|++++|.+.+++. +. .+++|++|++++ +..+..+++|++|++++|....
T Consensus 193 ~~-~~~l~~L~~L~l~~n~l~~~~~-~~-------------~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~ 257 (347)
T 4fmz_A 193 SP-LASLTSLHYFTAYVNQITDITP-VA-------------NMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISD 257 (347)
T ss_dssp GG-GGGCTTCCEEECCSSCCCCCGG-GG-------------GCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC
T ss_pred cc-ccCCCccceeecccCCCCCCch-hh-------------cCCcCCEEEccCCccCCCcchhcCCCCCEEECCCCccCC
Confidence 43 6778888888888888777554 33 344556666655 2335566666677776666555
Q ss_pred CCcccCCCCCCCEEEcCCCCCccCCccCCCCCCCCEEeCCCCcCCccChhhhcCCCchhHHHHHhhhhhhhh
Q 047943 240 LPPLLSGLSSLTKLVLTCCDVIEIPQDIGCLSSLELLFLCGNNFSKFTCKYQSTFTAEKTLLELLQYATVIT 311 (479)
Q Consensus 240 lp~~~~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~~i~~l~~L~~L~~~L~~n~~~~ 311 (479)
++ .+..+++|+.|++++|.+.+++ .+..+++|+.|++++|.++..+...+..+++|++| ++++|.+.+
T Consensus 258 ~~-~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L--~L~~n~l~~ 325 (347)
T 4fmz_A 258 IN-AVKDLTKLKMLNVGSNQISDIS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTL--FLSQNHITD 325 (347)
T ss_dssp CG-GGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEE--ECCSSSCCC
T ss_pred Ch-hHhcCCCcCEEEccCCccCCCh-hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEE--EccCCcccc
Confidence 43 3556666777777776666653 35566667777777776664443556666667777 666666543
No 10
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.95 E-value=5.2e-27 Score=250.66 Aligned_cols=297 Identities=22% Similarity=0.215 Sum_probs=198.4
Q ss_pred CccCCCccCceEEEecCCCCCCCC-CCC-CCCCceEEECCCCCCccc-ccccCCCCCCcEEEccCCCCCCCCC-CCCCCC
Q 047943 9 QSLEYLPEELRYLHWYEYPLKTLP-SNF-EPENLLELNLPYSKIETI-WEVKKEAPKLKYINLHNSQYLTGMP-DLSETP 84 (479)
Q Consensus 9 ~~~~~l~~~Lr~L~~~~~~l~~lp-~~~-~~~~L~~L~L~~s~i~~l-~~~~~~l~~L~~L~Ls~~~~l~~~p-~l~~l~ 84 (479)
+-+..+|+.+++|+++++.++.++ ..| .+++|++|+|++|++..+ +..++.+++|++|++++|......| .+++++
T Consensus 26 ~iP~~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 105 (606)
T 3t6q_A 26 EIPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPK 105 (606)
T ss_dssp SCCTTSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCT
T ss_pred cCcCCCCCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccc
Confidence 344556789999999999999885 456 899999999999999876 6779999999999999997666556 689999
Q ss_pred CCcEEeecCCCCCCCCCccccccCCccccceeeccCCCceecC-ccccCCCCCCEEeccCCC----------CCCCCC--
Q 047943 85 NLERLNILNCTNLAYIPSCIHNFNNLRSVIGLCLRNTAIEEVP-SSIESLTKLEKLDLSYCT----------RLKGLC-- 151 (479)
Q Consensus 85 ~L~~L~L~~c~~l~~~p~~l~~l~~L~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~c~----------~L~~L~-- 151 (479)
+|++|++++|......+..++ ++++|++|++++|.+..++ +.+..+++|+.|+++++. .+++|+
T Consensus 106 ~L~~L~L~~n~i~~l~~~~~~---~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l 182 (606)
T 3t6q_A 106 ALKHLFFIQTGISSIDFIPLH---NQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNL 182 (606)
T ss_dssp TCCEEECTTSCCSCGGGSCCT---TCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSE
T ss_pred cccEeeccccCcccCCcchhc---cCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhccccee
Confidence 999999999865543344544 5556777999999998763 344559999999999863 566677
Q ss_pred EEecCCCCCCCccchhhhc-------------------------------------------------cc--cCCeeecc
Q 047943 152 KLDLGYCSKFECFPEIIEK-------------------------------------------------ME--RLRSVDLQ 180 (479)
Q Consensus 152 ~L~L~~c~~l~~~p~~~~~-------------------------------------------------l~--~L~~L~L~ 180 (479)
.|++++|...+..|..+.. +. +|+.|+++
T Consensus 183 ~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~ 262 (606)
T 3t6q_A 183 SLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQ 262 (606)
T ss_dssp EEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECT
T ss_pred EEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEee
Confidence 7788877654433322111 00 45555555
Q ss_pred CccccccCcc-cccccCCCC----------CCCCCCCCCCCCeeecCC--C-----ccccccCCCceeecCCCCCC-CCC
Q 047943 181 STEVEELPSS-MENLEGLKD----------LPDSLPNLKSLQFLNVER--L-----FSIADLDKLEDLSISGRRGL-ILP 241 (479)
Q Consensus 181 ~~~i~~lp~~-i~~l~~L~~----------lp~~l~~l~~L~~L~l~~--l-----~~l~~l~~L~~L~l~~~~~~-~lp 241 (479)
+|.+.+++.. ++.+++|+. +|..+.++++|++|++++ + ..+..+++|++|++++|... .+|
T Consensus 263 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 342 (606)
T 3t6q_A 263 KHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELG 342 (606)
T ss_dssp TCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCC
T ss_pred cCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccc
Confidence 5555554432 444444443 555666666666666665 1 24455666666666666522 333
Q ss_pred c-ccCCCCCCCEEEcCCCCCccC---CccCCCCCCCCEEeCCCCcCCccChhhhcCCCchhHHHHHhhhhhhh
Q 047943 242 P-LLSGLSSLTKLVLTCCDVIEI---PQDIGCLSSLELLFLCGNNFSKFTCKYQSTFTAEKTLLELLQYATVI 310 (479)
Q Consensus 242 ~-~~~~l~~L~~L~L~~~~l~~l---p~~l~~l~~L~~L~Ls~n~l~~lp~~~i~~l~~L~~L~~~L~~n~~~ 310 (479)
. .+..+++|++|++++|.+.++ +..++.+++|+.|++++|.++.++...+..+++|+.| ++++|.+.
T Consensus 343 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L--~l~~n~l~ 413 (606)
T 3t6q_A 343 TGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELL--DLAFTRLK 413 (606)
T ss_dssp SSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEE--ECTTCCEE
T ss_pred hhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeE--ECCCCcCC
Confidence 3 255566666666666666552 4555666666666666666554432455566666666 66666553
No 11
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.95 E-value=3.4e-27 Score=249.93 Aligned_cols=156 Identities=19% Similarity=0.196 Sum_probs=116.1
Q ss_pred hccccCCeeeccCcccccc---CcccccccCCCC----------CCCCCCCCCCCCeeecCCC--------ccccccCCC
Q 047943 169 EKMERLRSVDLQSTEVEEL---PSSMENLEGLKD----------LPDSLPNLKSLQFLNVERL--------FSIADLDKL 227 (479)
Q Consensus 169 ~~l~~L~~L~L~~~~i~~l---p~~i~~l~~L~~----------lp~~l~~l~~L~~L~l~~l--------~~l~~l~~L 227 (479)
..+++|++|++++|.+..+ |..+..+++|+. +|..+..+++|++|++++. ..+..+++|
T Consensus 344 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 423 (570)
T 2z63_A 344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL 423 (570)
T ss_dssp CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTC
T ss_pred ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCC
Confidence 5667788888888877764 556666666665 3334677888888888871 246778889
Q ss_pred ceeecCCCCC-CCCCcccCCCCCCCEEEcCCCCCcc--CCccCCCCCCCCEEeCCCCcCCccChhhhcCCCchhHHHHHh
Q 047943 228 EDLSISGRRG-LILPPLLSGLSSLTKLVLTCCDVIE--IPQDIGCLSSLELLFLCGNNFSKFTCKYQSTFTAEKTLLELL 304 (479)
Q Consensus 228 ~~L~l~~~~~-~~lp~~~~~l~~L~~L~L~~~~l~~--lp~~l~~l~~L~~L~Ls~n~l~~lp~~~i~~l~~L~~L~~~L 304 (479)
++|++++|.. ...|..+.++++|++|++++|.+.+ +|..+..+++|+.|++++|.++.++...+..+++|++| ++
T Consensus 424 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L--~l 501 (570)
T 2z63_A 424 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL--NM 501 (570)
T ss_dssp CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE--EC
T ss_pred CEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEE--eC
Confidence 9999988884 4466677888899999999998873 88888889999999999998887732778888899999 89
Q ss_pred hhhhhhhccCCccccCCCcccccc
Q 047943 305 QYATVITRASSSSTLFSCNELQAA 328 (479)
Q Consensus 305 ~~n~~~~~~~~~~~l~~C~~L~~l 328 (479)
++|.+.+.. +..+.++++|+.+
T Consensus 502 ~~n~l~~~~--~~~~~~l~~L~~L 523 (570)
T 2z63_A 502 ASNQLKSVP--DGIFDRLTSLQKI 523 (570)
T ss_dssp CSSCCSCCC--TTTTTTCTTCCEE
T ss_pred CCCcCCCCC--HHHhhcccCCcEE
Confidence 888775432 1245566666655
No 12
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.95 E-value=1.2e-27 Score=256.93 Aligned_cols=292 Identities=17% Similarity=0.202 Sum_probs=202.6
Q ss_pred cCCccC--CCccCceEEEecCCCC-CCCCCCC-CCCCceEEECCCCC-Ccc--cccccCCC------CCCcEEEccCCCC
Q 047943 7 IDQSLE--YLPEELRYLHWYEYPL-KTLPSNF-EPENLLELNLPYSK-IET--IWEVKKEA------PKLKYINLHNSQY 73 (479)
Q Consensus 7 ~~~~~~--~l~~~Lr~L~~~~~~l-~~lp~~~-~~~~L~~L~L~~s~-i~~--l~~~~~~l------~~L~~L~Ls~~~~ 73 (479)
+|+.+. .++ +|++|++++|.+ ..+|..+ .+++|++|++++|+ ++. +|..++.+ ++|+.|++++|..
T Consensus 239 ip~~l~~~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l 317 (636)
T 4eco_A 239 KTEDLKWDNLK-DLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNL 317 (636)
T ss_dssp TTSCCCGGGCT-TCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCC
T ss_pred CchhhhhcccC-CCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcC
Confidence 788888 888 899999999985 6788877 89999999999998 885 88888776 9999999999976
Q ss_pred CCCCCC---CCCCCCCcEEeecCCCCCCCCCccccccCCccccceeeccCCCceecCccccCCCC-CCEEeccCCC----
Q 047943 74 LTGMPD---LSETPNLERLNILNCTNLAYIPSCIHNFNNLRSVIGLCLRNTAIEEVPSSIESLTK-LEKLDLSYCT---- 145 (479)
Q Consensus 74 l~~~p~---l~~l~~L~~L~L~~c~~l~~~p~~l~~l~~L~~L~~L~L~~~~i~~lp~~i~~l~~-L~~L~L~~c~---- 145 (479)
. .+|. ++++++|++|++++|...+.+| .++ .++.|+.|++++|.+..+|..++.+++ |+.|+++++.
T Consensus 318 ~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~---~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~l 392 (636)
T 4eco_A 318 K-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFG---SEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYI 392 (636)
T ss_dssp S-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCE---EEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSC
T ss_pred C-ccCchhhhccCCCCCEEeCcCCcCccchh-hhC---CCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCccc
Confidence 5 7776 8999999999999987666788 544 456677799999999999999999999 9999999864
Q ss_pred -------CCCCCCEEecCCCCCCCccchhhh-------ccccCCeeeccCccccccCcccc-cccCCCC----------C
Q 047943 146 -------RLKGLCKLDLGYCSKFECFPEIIE-------KMERLRSVDLQSTEVEELPSSME-NLEGLKD----------L 200 (479)
Q Consensus 146 -------~L~~L~~L~L~~c~~l~~~p~~~~-------~l~~L~~L~L~~~~i~~lp~~i~-~l~~L~~----------l 200 (479)
.+++|+.|++++|...+..|..+. .+.+|++|++++|.+.++|..+. .+++|+. +
T Consensus 393 p~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i 472 (636)
T 4eco_A 393 PNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEI 472 (636)
T ss_dssp CSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBC
T ss_pred chhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCc
Confidence 234789999999998888888777 77899999999999998887543 2444433 2
Q ss_pred CCCCCC--------CCCCCeeecCC--C----cccc--ccCCCceeecCCCCCCCCCcccCCCCCCCEEEcC------CC
Q 047943 201 PDSLPN--------LKSLQFLNVER--L----FSIA--DLDKLEDLSISGRRGLILPPLLSGLSSLTKLVLT------CC 258 (479)
Q Consensus 201 p~~l~~--------l~~L~~L~l~~--l----~~l~--~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~L~------~~ 258 (479)
|..+.. +++|+.|++++ + ..+. .+++|+.|++++|....+|..+..+++|+.|+++ +|
T Consensus 473 ~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N 552 (636)
T 4eco_A 473 PKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGN 552 (636)
T ss_dssp CSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCC
T ss_pred CHHHhccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccC
Confidence 222111 11455555544 1 1122 4445555555555444444444445555555552 23
Q ss_pred CCcc-CCccCCCCCCCCEEeCCCCcCCccChhhhcCCCchhHHHHHhhhhhh
Q 047943 259 DVIE-IPQDIGCLSSLELLFLCGNNFSKFTCKYQSTFTAEKTLLELLQYATV 309 (479)
Q Consensus 259 ~l~~-lp~~l~~l~~L~~L~Ls~n~l~~lp~~~i~~l~~L~~L~~~L~~n~~ 309 (479)
.+.+ +|..++.+++|+.|+|++|.++.+| ..+. ++|+.| ++++|++
T Consensus 553 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ip-~~~~--~~L~~L--~Ls~N~l 599 (636)
T 4eco_A 553 RTLREWPEGITLCPSLTQLQIGSNDIRKVN-EKIT--PNISVL--DIKDNPN 599 (636)
T ss_dssp BCCCCCCTTGGGCSSCCEEECCSSCCCBCC-SCCC--TTCCEE--ECCSCTT
T ss_pred cccccChHHHhcCCCCCEEECCCCcCCccC-HhHh--CcCCEE--ECcCCCC
Confidence 3332 4444445555555555555555454 3322 445555 4444433
No 13
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.94 E-value=4.2e-26 Score=236.14 Aligned_cols=291 Identities=23% Similarity=0.324 Sum_probs=205.1
Q ss_pred CceEEEecCCCCCCCCCCCCCCCceEEECCCCCCcccccccCCCCCCcEEEccCCCCCCCCCCCCCCCCCcEEeecCCCC
Q 047943 17 ELRYLHWYEYPLKTLPSNFEPENLLELNLPYSKIETIWEVKKEAPKLKYINLHNSQYLTGMPDLSETPNLERLNILNCTN 96 (479)
Q Consensus 17 ~Lr~L~~~~~~l~~lp~~~~~~~L~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c~~ 96 (479)
++|.|++.++.++.+|....+++|++|++++|.++.++. +..+++|+.|++++|... .++.+.++++|++|++++|..
T Consensus 47 ~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~-~~~~~~~l~~L~~L~L~~n~l 124 (466)
T 1o6v_A 47 QVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIA-DITPLANLTNLTGLTLFNNQI 124 (466)
T ss_dssp TCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC-CCGGGTTCTTCCEEECCSSCC
T ss_pred cccEEecCCCCCccCcchhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccc-cChhhcCCCCCCEEECCCCCC
Confidence 788888888888888764478888888888888887766 788888888888887543 444478888888888888643
Q ss_pred CCCCCccccccCCccccceeeccCCCceecCccccCCCCCCEEeccC-------CCCCCCCCEEecCCCCCCCccchhhh
Q 047943 97 LAYIPSCIHNFNNLRSVIGLCLRNTAIEEVPSSIESLTKLEKLDLSY-------CTRLKGLCKLDLGYCSKFECFPEIIE 169 (479)
Q Consensus 97 l~~~p~~l~~l~~L~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~-------c~~L~~L~~L~L~~c~~l~~~p~~~~ 169 (479)
..++. +.++++|++|++++|.+..++ .++.+++|+.|++.+ ..++++|+.|++++|... .++ .+.
T Consensus 125 -~~~~~----~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~-~l~ 196 (466)
T 1o6v_A 125 -TDIDP----LKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVS-DIS-VLA 196 (466)
T ss_dssp -CCCGG----GTTCTTCSEEEEEEEEECCCG-GGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCC-CCG-GGG
T ss_pred -CCChH----HcCCCCCCEEECCCCccCCCh-hhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCC-CCh-hhc
Confidence 33332 455666677888888777765 377777777777653 235667777777776533 333 366
Q ss_pred ccccCCeeeccCccccccCcccccccCCCCCC---------CCCCCCCCCCeeecCC-----CccccccCCCceeecCCC
Q 047943 170 KMERLRSVDLQSTEVEELPSSMENLEGLKDLP---------DSLPNLKSLQFLNVER-----LFSIADLDKLEDLSISGR 235 (479)
Q Consensus 170 ~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~lp---------~~l~~l~~L~~L~l~~-----l~~l~~l~~L~~L~l~~~ 235 (479)
.+++|++|++++|.+.+++. ++.+++|+.+. ..+..+++|+.|++++ ...+..+++|+.|++++|
T Consensus 197 ~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n 275 (466)
T 1o6v_A 197 KLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGAN 275 (466)
T ss_dssp GCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSS
T ss_pred cCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchhhhcCCCCCEEECCCC
Confidence 77777777777777776544 55555555410 2355677888888877 244667788888888888
Q ss_pred CCCCCCcccCCCCCCCEEEcCCCCCccCCccCCCCCCCCEEeCCCCcCCccChhhhcCCCchhHHHHHhhhhhhhhccCC
Q 047943 236 RGLILPPLLSGLSSLTKLVLTCCDVIEIPQDIGCLSSLELLFLCGNNFSKFTCKYQSTFTAEKTLLELLQYATVITRASS 315 (479)
Q Consensus 236 ~~~~lp~~~~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~~i~~l~~L~~L~~~L~~n~~~~~~~~ 315 (479)
....++. +..+++|+.|++++|.+.+++. ++.+++|+.|++++|.++.++ . +..+++|+.| ++++|.+.+..
T Consensus 276 ~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~-~-~~~l~~L~~L--~l~~n~l~~~~-- 347 (466)
T 1o6v_A 276 QISNISP-LAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNISDIS-P-VSSLTKLQRL--FFYNNKVSDVS-- 347 (466)
T ss_dssp CCCCCGG-GTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSSCCSCCG-G-GGGCTTCCEE--ECCSSCCCCCG--
T ss_pred ccCcccc-ccCCCccCeEEcCCCcccCchh-hcCCCCCCEEECcCCcCCCch-h-hccCccCCEe--ECCCCccCCch--
Confidence 8666666 6778888888888888887654 677888888888888888776 3 7788888888 88887765431
Q ss_pred ccccCCCcccccc
Q 047943 316 SSTLFSCNELQAA 328 (479)
Q Consensus 316 ~~~l~~C~~L~~l 328 (479)
.+.+|++|+.+
T Consensus 348 --~l~~l~~L~~L 358 (466)
T 1o6v_A 348 --SLANLTNINWL 358 (466)
T ss_dssp --GGTTCTTCCEE
T ss_pred --hhccCCCCCEE
Confidence 44555555544
No 14
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.94 E-value=6.2e-26 Score=239.34 Aligned_cols=135 Identities=20% Similarity=0.240 Sum_probs=84.7
Q ss_pred ccCCeeeccCccccccCccc-ccccCCCCC--------------CCCCCCCCCCCeeecCC--Cc-------cccccCCC
Q 047943 172 ERLRSVDLQSTEVEELPSSM-ENLEGLKDL--------------PDSLPNLKSLQFLNVER--LF-------SIADLDKL 227 (479)
Q Consensus 172 ~~L~~L~L~~~~i~~lp~~i-~~l~~L~~l--------------p~~l~~l~~L~~L~l~~--l~-------~l~~l~~L 227 (479)
.+|++|++++|.+..+|..+ +.+++|+.+ +..++.+++|++|++++ +. .+..+++|
T Consensus 310 ~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L 389 (549)
T 2z81_A 310 EKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNL 389 (549)
T ss_dssp TTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTC
T ss_pred ccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCC
Confidence 34555556666665566554 355665541 22356677788888776 21 25667788
Q ss_pred ceeecCCCCCCCCCcccCCCCCCCEEEcCCCCCccCCccC------------------CCCCCCCEEeCCCCcCCccChh
Q 047943 228 EDLSISGRRGLILPPLLSGLSSLTKLVLTCCDVIEIPQDI------------------GCLSSLELLFLCGNNFSKFTCK 289 (479)
Q Consensus 228 ~~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~lp~~l------------------~~l~~L~~L~Ls~n~l~~lp~~ 289 (479)
++|++++|....+|..+..+++|++|++++|.+.++|..+ ..+++|++|+|++|+++.+| .
T Consensus 390 ~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~~ip-~ 468 (549)
T 2z81_A 390 TSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLKTLP-D 468 (549)
T ss_dssp CEEECTTCCCCCCCSCCCCCTTCCEEECTTSCCSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCC-C
T ss_pred CEEECCCCCCccCChhhcccccccEEECCCCCcccccchhcCCceEEECCCCChhhhcccCChhcEEECCCCccCcCC-C
Confidence 8888888877777777777777888888877776655432 24556666666666666666 3
Q ss_pred hhcCCCchhHHHHHhhhhhhh
Q 047943 290 YQSTFTAEKTLLELLQYATVI 310 (479)
Q Consensus 290 ~i~~l~~L~~L~~~L~~n~~~ 310 (479)
...+++|+.| ++++|.+.
T Consensus 469 -~~~l~~L~~L--~Ls~N~l~ 486 (549)
T 2z81_A 469 -ASLFPVLLVM--KISRNQLK 486 (549)
T ss_dssp -GGGCTTCCEE--ECCSSCCC
T ss_pred -cccCccCCEE--ecCCCccC
Confidence 3456666666 66555543
No 15
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.94 E-value=3e-26 Score=240.30 Aligned_cols=284 Identities=18% Similarity=0.156 Sum_probs=183.5
Q ss_pred CccCceEEEecCCCCCCCCC-CC-CCCCceEEECCCCCCccc-ccccCCCCCCcEEEccCCCCCCCCCCCCCCCCCcEEe
Q 047943 14 LPEELRYLHWYEYPLKTLPS-NF-EPENLLELNLPYSKIETI-WEVKKEAPKLKYINLHNSQYLTGMPDLSETPNLERLN 90 (479)
Q Consensus 14 l~~~Lr~L~~~~~~l~~lp~-~~-~~~~L~~L~L~~s~i~~l-~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~ 90 (479)
++.+|++|+++++.++.++. .| .+++|++|+|++|+++.+ +..++.+++|++|+|++|. ++.+|.. .+++|++|+
T Consensus 19 ~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~-~l~~L~~L~ 96 (520)
T 2z7x_B 19 LSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK-LVKISCH-PTVNLKHLD 96 (520)
T ss_dssp CCTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSC-CCEEECC-CCCCCSEEE
T ss_pred ccccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCc-eeecCcc-ccCCccEEe
Confidence 44689999999999988874 45 889999999999999987 6789999999999999986 4467755 899999999
Q ss_pred ecCCCCCC-CCCccccccCCccccceeeccCCCceecCccccCCCCC--CEEeccCCCC---------------------
Q 047943 91 ILNCTNLA-YIPSCIHNFNNLRSVIGLCLRNTAIEEVPSSIESLTKL--EKLDLSYCTR--------------------- 146 (479)
Q Consensus 91 L~~c~~l~-~~p~~l~~l~~L~~L~~L~L~~~~i~~lp~~i~~l~~L--~~L~L~~c~~--------------------- 146 (479)
+++|.... .+|..++++.+|+ +|++++|.+.. ..++.+++| +.|++++|.-
T Consensus 97 L~~N~l~~~~~p~~~~~l~~L~---~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~ 171 (520)
T 2z7x_B 97 LSFNAFDALPICKEFGNMSQLK---FLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIV 171 (520)
T ss_dssp CCSSCCSSCCCCGGGGGCTTCC---EEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEE
T ss_pred ccCCccccccchhhhccCCcce---EEEecCcccch--hhccccccceeeEEEeecccccccccccccccccccceEEEE
Confidence 99987655 4677777766554 46777776654 234445555 5555544321
Q ss_pred -----------------CC---------------------------------------------------------CCCE
Q 047943 147 -----------------LK---------------------------------------------------------GLCK 152 (479)
Q Consensus 147 -----------------L~---------------------------------------------------------~L~~ 152 (479)
++ +|++
T Consensus 172 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~ 251 (520)
T 2z7x_B 172 FPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWY 251 (520)
T ss_dssp CCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSE
T ss_pred eccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccE
Confidence 11 3444
Q ss_pred EecCCCCCCCccchhh-----hccccCCeeeccCccccccC-ccc-------------------------ccccCCCC--
Q 047943 153 LDLGYCSKFECFPEII-----EKMERLRSVDLQSTEVEELP-SSM-------------------------ENLEGLKD-- 199 (479)
Q Consensus 153 L~L~~c~~l~~~p~~~-----~~l~~L~~L~L~~~~i~~lp-~~i-------------------------~~l~~L~~-- 199 (479)
|++++|...+.+|..+ +++++|+.++++++.+ ++| ..+ ..+++|+.
T Consensus 252 L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~ 330 (520)
T 2z7x_B 252 FSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLD 330 (520)
T ss_dssp EEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEE
T ss_pred EEeecccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEE
Confidence 4444443333344433 3333333333333333 222 011 22333332
Q ss_pred ---------CCCCCCCCCCCCeeecCC--Cc-------cccccCCCceeecCCCCCCC-CCcc-cCCCCCCCEEEcCCCC
Q 047943 200 ---------LPDSLPNLKSLQFLNVER--LF-------SIADLDKLEDLSISGRRGLI-LPPL-LSGLSSLTKLVLTCCD 259 (479)
Q Consensus 200 ---------lp~~l~~l~~L~~L~l~~--l~-------~l~~l~~L~~L~l~~~~~~~-lp~~-~~~l~~L~~L~L~~~~ 259 (479)
+|..+.++++|++|++++ +. .+..+++|++|++++|.... +|.. +..+++|++|++++|.
T Consensus 331 Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~ 410 (520)
T 2z7x_B 331 FSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNI 410 (520)
T ss_dssp CCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSC
T ss_pred eECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCC
Confidence 355666667777777765 22 24566777777777776544 5543 5566777777777777
Q ss_pred Ccc-CCccCCCCCCCCEEeCCCCcCCccChhhhcCCCchhHHHHHhhhhhhh
Q 047943 260 VIE-IPQDIGCLSSLELLFLCGNNFSKFTCKYQSTFTAEKTLLELLQYATVI 310 (479)
Q Consensus 260 l~~-lp~~l~~l~~L~~L~Ls~n~l~~lp~~~i~~l~~L~~L~~~L~~n~~~ 310 (479)
+++ +|..+. ++|+.|++++|+++.+| ..+..+++|+.| ++++|++.
T Consensus 411 l~~~~~~~l~--~~L~~L~Ls~N~l~~ip-~~~~~l~~L~~L--~L~~N~l~ 457 (520)
T 2z7x_B 411 LTDTIFRCLP--PRIKVLDLHSNKIKSIP-KQVVKLEALQEL--NVASNQLK 457 (520)
T ss_dssp CCGGGGGSCC--TTCCEEECCSSCCCCCC-GGGGGCTTCCEE--ECCSSCCC
T ss_pred CCcchhhhhc--ccCCEEECCCCcccccc-hhhhcCCCCCEE--ECCCCcCC
Confidence 755 554443 67888888888888888 667788888888 77777654
No 16
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.94 E-value=4.1e-26 Score=235.08 Aligned_cols=302 Identities=15% Similarity=0.156 Sum_probs=224.1
Q ss_pred ceEEEecCCCCCCCCCCCCCCCceEEECCCCCCccc-ccccCCCCCCcEEEccCCCCCCCCC--CCCCCCCCcEEeecCC
Q 047943 18 LRYLHWYEYPLKTLPSNFEPENLLELNLPYSKIETI-WEVKKEAPKLKYINLHNSQYLTGMP--DLSETPNLERLNILNC 94 (479)
Q Consensus 18 Lr~L~~~~~~l~~lp~~~~~~~L~~L~L~~s~i~~l-~~~~~~l~~L~~L~Ls~~~~l~~~p--~l~~l~~L~~L~L~~c 94 (479)
-+.++..+..++.+|. -+++|++|+|++|+++.+ +..+..+++|++|++++|.....++ .|.++++|++|++++|
T Consensus 12 ~~~~~c~~~~l~~lp~--l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n 89 (455)
T 3v47_A 12 GYNAICINRGLHQVPE--LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89 (455)
T ss_dssp TTEEECCSSCCSSCCC--CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC
T ss_pred ccccCcCCCCcccCCC--CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCC
Confidence 4567888889999998 458999999999999987 6789999999999999998765654 4899999999999998
Q ss_pred CCCCCCCccccccCCccccceeeccCCCcee-cCcc--ccCCCCCCEEeccCCC-----------CCCCCCEEecCCCCC
Q 047943 95 TNLAYIPSCIHNFNNLRSVIGLCLRNTAIEE-VPSS--IESLTKLEKLDLSYCT-----------RLKGLCKLDLGYCSK 160 (479)
Q Consensus 95 ~~l~~~p~~l~~l~~L~~L~~L~L~~~~i~~-lp~~--i~~l~~L~~L~L~~c~-----------~L~~L~~L~L~~c~~ 160 (479)
......|..++++. .|++|++++|.+.. ++.. ++.+++|++|+++++. ++++|++|++++|..
T Consensus 90 ~l~~~~~~~~~~l~---~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l 166 (455)
T 3v47_A 90 QFLQLETGAFNGLA---NLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKV 166 (455)
T ss_dssp TTCEECTTTTTTCT---TCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCB
T ss_pred ccCccChhhccCcc---cCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcc
Confidence 77666677776655 55669999999874 4444 8889999999998752 466778888888877
Q ss_pred CCccchhhhcc--ccCCeeeccCccccccCccc---------ccccCCCCCC-----------CCCC---CCCCCCeeec
Q 047943 161 FECFPEIIEKM--ERLRSVDLQSTEVEELPSSM---------ENLEGLKDLP-----------DSLP---NLKSLQFLNV 215 (479)
Q Consensus 161 l~~~p~~~~~l--~~L~~L~L~~~~i~~lp~~i---------~~l~~L~~lp-----------~~l~---~l~~L~~L~l 215 (479)
.+..|..+..+ .+|+.|+++++.+..++... ..+++|+.+. ..+. ...+|+.|++
T Consensus 167 ~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l 246 (455)
T 3v47_A 167 KSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLIL 246 (455)
T ss_dssp SCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEEC
T ss_pred cccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEee
Confidence 66666666665 57788888888777655321 1111121110 0000 0134444444
Q ss_pred CCC-----------------cccc--ccCCCceeecCCCCC-CCCCcccCCCCCCCEEEcCCCCCcc-CCccCCCCCCCC
Q 047943 216 ERL-----------------FSIA--DLDKLEDLSISGRRG-LILPPLLSGLSSLTKLVLTCCDVIE-IPQDIGCLSSLE 274 (479)
Q Consensus 216 ~~l-----------------~~l~--~l~~L~~L~l~~~~~-~~lp~~~~~l~~L~~L~L~~~~l~~-lp~~l~~l~~L~ 274 (479)
++. ..+. ..++|+.|++++|.. ...|..+..+++|++|++++|.+.+ .|..++.+++|+
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 326 (455)
T 3v47_A 247 SNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLL 326 (455)
T ss_dssp TTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred ccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCC
Confidence 431 0011 125899999999984 4457778899999999999999998 577899999999
Q ss_pred EEeCCCCcCCccChhhhcCCCchhHHHHHhhhhhhhhccCCccccCCCcccccc
Q 047943 275 LLFLCGNNFSKFTCKYQSTFTAEKTLLELLQYATVITRASSSSTLFSCNELQAA 328 (479)
Q Consensus 275 ~L~Ls~n~l~~lp~~~i~~l~~L~~L~~~L~~n~~~~~~~~~~~l~~C~~L~~l 328 (479)
+|++++|.++.++...+..+++|+.| ++++|.+.+..+ ..+.++++|+.+
T Consensus 327 ~L~Ls~N~l~~~~~~~~~~l~~L~~L--~Ls~N~l~~~~~--~~~~~l~~L~~L 376 (455)
T 3v47_A 327 KLNLSQNFLGSIDSRMFENLDKLEVL--DLSYNHIRALGD--QSFLGLPNLKEL 376 (455)
T ss_dssp EEECCSSCCCEECGGGGTTCTTCCEE--ECCSSCCCEECT--TTTTTCTTCCEE
T ss_pred EEECCCCccCCcChhHhcCcccCCEE--ECCCCcccccCh--hhccccccccEE
Confidence 99999999998864788999999999 999998854422 245556666554
No 17
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.94 E-value=1.1e-25 Score=233.62 Aligned_cols=280 Identities=19% Similarity=0.236 Sum_probs=183.8
Q ss_pred CCccCceEEEecCCCCCCCCC-CC-CCCCceEEECCCCCCccc-ccccCCCCCCcEEEccCCCCCCCCC--CCCCCCCCc
Q 047943 13 YLPEELRYLHWYEYPLKTLPS-NF-EPENLLELNLPYSKIETI-WEVKKEAPKLKYINLHNSQYLTGMP--DLSETPNLE 87 (479)
Q Consensus 13 ~l~~~Lr~L~~~~~~l~~lp~-~~-~~~~L~~L~L~~s~i~~l-~~~~~~l~~L~~L~Ls~~~~l~~~p--~l~~l~~L~ 87 (479)
.+|.+++.|+++++.++.++. .| .+++|++|+|++|.++.+ +..+..+++|+.|+|++|. ++.+| .|.++++|+
T Consensus 29 ~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~ 107 (477)
T 2id5_A 29 GIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR-LKLIPLGVFTGLSNLT 107 (477)
T ss_dssp CCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCTTSSTTCTTCC
T ss_pred CCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc-CCccCcccccCCCCCC
Confidence 445577777777777776643 44 677777777777777765 5667777777777777765 33444 266777777
Q ss_pred EEeecCCCCCCCCCccccccCCccccceeeccCCCceec-CccccCCCCCCEEeccCCC----------CCCCCCEEecC
Q 047943 88 RLNILNCTNLAYIPSCIHNFNNLRSVIGLCLRNTAIEEV-PSSIESLTKLEKLDLSYCT----------RLKGLCKLDLG 156 (479)
Q Consensus 88 ~L~L~~c~~l~~~p~~l~~l~~L~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~c~----------~L~~L~~L~L~ 156 (479)
+|++++|......+..+.++ ++|+.|++++|.+..+ +..+..+++|+.|++++|. ++++|+.|+++
T Consensus 108 ~L~Ls~n~i~~~~~~~~~~l---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 184 (477)
T 2id5_A 108 KLDISENKIVILLDYMFQDL---YNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLR 184 (477)
T ss_dssp EEECTTSCCCEECTTTTTTC---TTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEE
T ss_pred EEECCCCccccCChhHcccc---ccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCC
Confidence 77777765544444444443 3445577777777655 3356666666666666542 34445555555
Q ss_pred CCCCCCccchhhhccccCCeeeccCccccccCcccccccCCCCCCCCCCCCCCCCeeecCC--C-----ccccccCCCce
Q 047943 157 YCSKFECFPEIIEKMERLRSVDLQSTEVEELPSSMENLEGLKDLPDSLPNLKSLQFLNVER--L-----FSIADLDKLED 229 (479)
Q Consensus 157 ~c~~l~~~p~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~lp~~l~~l~~L~~L~l~~--l-----~~l~~l~~L~~ 229 (479)
+|......+..+..+++|++|+++++...+ .+|.......+|+.|++++ + ..+..+++|+.
T Consensus 185 ~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~------------~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 252 (477)
T 2id5_A 185 HLNINAIRDYSFKRLYRLKVLEISHWPYLD------------TMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRF 252 (477)
T ss_dssp SCCCCEECTTCSCSCTTCCEEEEECCTTCC------------EECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCE
T ss_pred CCcCcEeChhhcccCcccceeeCCCCcccc------------ccCcccccCccccEEECcCCcccccCHHHhcCccccCe
Confidence 544433333344445555555555443221 1233333445788888876 2 24567888999
Q ss_pred eecCCCCCCCCC-cccCCCCCCCEEEcCCCCCcc-CCccCCCCCCCCEEeCCCCcCCccChhhhcCCCchhHHHHHhhhh
Q 047943 230 LSISGRRGLILP-PLLSGLSSLTKLVLTCCDVIE-IPQDIGCLSSLELLFLCGNNFSKFTCKYQSTFTAEKTLLELLQYA 307 (479)
Q Consensus 230 L~l~~~~~~~lp-~~~~~l~~L~~L~L~~~~l~~-lp~~l~~l~~L~~L~Ls~n~l~~lp~~~i~~l~~L~~L~~~L~~n 307 (479)
|++++|....++ ..+..+++|+.|++++|.+.+ .|..+..+++|+.|+|++|.++.++...+..+++|+.| ++++|
T Consensus 253 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L--~l~~N 330 (477)
T 2id5_A 253 LNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETL--ILDSN 330 (477)
T ss_dssp EECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEE--ECCSS
T ss_pred eECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEE--EccCC
Confidence 999888854443 457788889999999998888 57788888999999999999888885567788888888 88888
Q ss_pred hhh
Q 047943 308 TVI 310 (479)
Q Consensus 308 ~~~ 310 (479)
.+.
T Consensus 331 ~l~ 333 (477)
T 2id5_A 331 PLA 333 (477)
T ss_dssp CEE
T ss_pred Ccc
Confidence 764
No 18
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.94 E-value=2.6e-26 Score=252.34 Aligned_cols=291 Identities=18% Similarity=0.219 Sum_probs=192.8
Q ss_pred cCCccC--CCccCceEEEecCCC-CCCCCCCC-CCCCceEEECCCCC-Ccc--cccccCC-------CCCCcEEEccCCC
Q 047943 7 IDQSLE--YLPEELRYLHWYEYP-LKTLPSNF-EPENLLELNLPYSK-IET--IWEVKKE-------APKLKYINLHNSQ 72 (479)
Q Consensus 7 ~~~~~~--~l~~~Lr~L~~~~~~-l~~lp~~~-~~~~L~~L~L~~s~-i~~--l~~~~~~-------l~~L~~L~Ls~~~ 72 (479)
+|+.+. .++ +|++|++++|. ...+|..+ .+++|++|+|++|+ ++. +|..++. +++|+.|++++|.
T Consensus 481 iP~~l~f~~L~-~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~ 559 (876)
T 4ecn_A 481 ENEELSWSNLK-DLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN 559 (876)
T ss_dssp TTSCCCGGGCT-TCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC
T ss_pred CChhhhhccCC-CCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc
Confidence 787776 777 89999999998 46788877 89999999999998 875 7765554 4599999999987
Q ss_pred CCCCCCC---CCCCCCCcEEeecCCCCCCCCCccccccCCccccceeeccCCCceecCccccCCCC-CCEEeccCCC---
Q 047943 73 YLTGMPD---LSETPNLERLNILNCTNLAYIPSCIHNFNNLRSVIGLCLRNTAIEEVPSSIESLTK-LEKLDLSYCT--- 145 (479)
Q Consensus 73 ~l~~~p~---l~~l~~L~~L~L~~c~~l~~~p~~l~~l~~L~~L~~L~L~~~~i~~lp~~i~~l~~-L~~L~L~~c~--- 145 (479)
.. .+|. ++++++|++|++++|... .+| .+.+++.|+.|++++|.+..+|..++.+++ |+.|++++|.
T Consensus 560 L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp----~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~ 633 (876)
T 4ecn_A 560 LE-EFPASASLQKMVKLGLLDCVHNKVR-HLE----AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKY 633 (876)
T ss_dssp CC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC----CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCS
T ss_pred CC-ccCChhhhhcCCCCCEEECCCCCcc-cch----hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCCc
Confidence 66 7776 899999999999997654 777 445566777799999999999999999998 9999998863
Q ss_pred ------CC--CCCCEEecCCCCCCCccchh---hh--ccccCCeeeccCccccccCcccc-cccCCCC----------CC
Q 047943 146 ------RL--KGLCKLDLGYCSKFECFPEI---IE--KMERLRSVDLQSTEVEELPSSME-NLEGLKD----------LP 201 (479)
Q Consensus 146 ------~L--~~L~~L~L~~c~~l~~~p~~---~~--~l~~L~~L~L~~~~i~~lp~~i~-~l~~L~~----------lp 201 (479)
.+ ++|+.|++++|...+.+|.. ++ .+.+|+.|++++|.+..+|..+. .+++|+. +|
T Consensus 634 lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip 713 (876)
T 4ecn_A 634 IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIP 713 (876)
T ss_dssp CCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCC
T ss_pred CchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccC
Confidence 12 23888999998776655432 22 33478889999988888877653 4444333 23
Q ss_pred CCCCC--------CCCCCeeecCC--C----cccc--ccCCCceeecCCCCCCCCCcccCCCCCCCEEEcCC------CC
Q 047943 202 DSLPN--------LKSLQFLNVER--L----FSIA--DLDKLEDLSISGRRGLILPPLLSGLSSLTKLVLTC------CD 259 (479)
Q Consensus 202 ~~l~~--------l~~L~~L~l~~--l----~~l~--~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~L~~------~~ 259 (479)
..+.. +++|+.|++++ + ..+. .+++|+.|++++|....+|..+..+++|+.|+|++ |.
T Consensus 714 ~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~ 793 (876)
T 4ecn_A 714 ENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNR 793 (876)
T ss_dssp TTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCB
T ss_pred hHHhccccccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCccccc
Confidence 22221 12455555544 1 1222 44555555555555444555555555555555543 33
Q ss_pred Ccc-CCccCCCCCCCCEEeCCCCcCCccChhhhcCCCchhHHHHHhhhhhh
Q 047943 260 VIE-IPQDIGCLSSLELLFLCGNNFSKFTCKYQSTFTAEKTLLELLQYATV 309 (479)
Q Consensus 260 l~~-lp~~l~~l~~L~~L~Ls~n~l~~lp~~~i~~l~~L~~L~~~L~~n~~ 309 (479)
+.+ +|..+..+++|+.|+|++|.++.+| ..+. ++|+.| +|++|++
T Consensus 794 l~~~ip~~l~~L~~L~~L~Ls~N~L~~Ip-~~l~--~~L~~L--dLs~N~l 839 (876)
T 4ecn_A 794 ILRQWPTGITTCPSLIQLQIGSNDIRKVD-EKLT--PQLYIL--DIADNPN 839 (876)
T ss_dssp CCCCCCTTGGGCSSCCEEECCSSCCCBCC-SCCC--SSSCEE--ECCSCTT
T ss_pred ccccChHHHhcCCCCCEEECCCCCCCccC-Hhhc--CCCCEE--ECCCCCC
Confidence 333 4555555555555555555555555 3332 355555 4444443
No 19
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.94 E-value=3.7e-26 Score=241.07 Aligned_cols=292 Identities=20% Similarity=0.249 Sum_probs=173.2
Q ss_pred CCccCCCccCceEEEecCCCCCCCCC-CC-CCCCceEEECCCCCCcccccc-cCCCCCCcEEEccCCCCCC-CCC-CCCC
Q 047943 8 DQSLEYLPEELRYLHWYEYPLKTLPS-NF-EPENLLELNLPYSKIETIWEV-KKEAPKLKYINLHNSQYLT-GMP-DLSE 82 (479)
Q Consensus 8 ~~~~~~l~~~Lr~L~~~~~~l~~lp~-~~-~~~~L~~L~L~~s~i~~l~~~-~~~l~~L~~L~Ls~~~~l~-~~p-~l~~ 82 (479)
|..+..++ +||+|+++++.++.++. .| .+++|++|++++|+++.++.. ++.+++|+.|++++|.... ..| .+.+
T Consensus 43 ~~~~~~l~-~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~ 121 (549)
T 2z81_A 43 HGDLRACA-NLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPN 121 (549)
T ss_dssp SSTTSSCT-TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTT
T ss_pred hhhhhcCC-cccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhc
Confidence 45667766 78888888888877764 45 788888888888888876644 7888888888888876543 233 5777
Q ss_pred CCCCcEEeecCCCCCCCCCc-cccccCCccccceeeccCCCcee-cCccccCC------------------------CCC
Q 047943 83 TPNLERLNILNCTNLAYIPS-CIHNFNNLRSVIGLCLRNTAIEE-VPSSIESL------------------------TKL 136 (479)
Q Consensus 83 l~~L~~L~L~~c~~l~~~p~-~l~~l~~L~~L~~L~L~~~~i~~-lp~~i~~l------------------------~~L 136 (479)
+++|++|++++|..+..+|. .+.+ +++|++|++++|.+.. +|..++.+ ++|
T Consensus 122 l~~L~~L~L~~n~~~~~~~~~~~~~---l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L 198 (549)
T 2z81_A 122 LTNLQTLRIGNVETFSEIRRIDFAG---LTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSV 198 (549)
T ss_dssp CTTCCEEEEEESSSCCEECTTTTTT---CCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTB
T ss_pred cCCccEEECCCCccccccCHhhhhc---ccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccc
Confidence 88888888887765554442 3332 2333334444444432 22222222 222
Q ss_pred CEEeccCCC-----------------------------------------------------------------------
Q 047943 137 EKLDLSYCT----------------------------------------------------------------------- 145 (479)
Q Consensus 137 ~~L~L~~c~----------------------------------------------------------------------- 145 (479)
+.|+++++.
T Consensus 199 ~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~ 278 (549)
T 2z81_A 199 RYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVS 278 (549)
T ss_dssp SEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCC
T ss_pred cEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhh
Confidence 222222210
Q ss_pred -----------------------------------------------------CCCCCCEEecCCCCCCCccchh---hh
Q 047943 146 -----------------------------------------------------RLKGLCKLDLGYCSKFECFPEI---IE 169 (479)
Q Consensus 146 -----------------------------------------------------~L~~L~~L~L~~c~~l~~~p~~---~~ 169 (479)
++++|++|++++|...+.+|.. ++
T Consensus 279 ~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 358 (549)
T 2z81_A 279 ELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKG 358 (549)
T ss_dssp CCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTT
T ss_pred hhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhh
Confidence 1223333333333333222211 23
Q ss_pred ccccCCeeeccCccccccCc---ccccccCCCC----------CCCCCCCCCCCCeeecCC--Cccccc--cCCCceeec
Q 047943 170 KMERLRSVDLQSTEVEELPS---SMENLEGLKD----------LPDSLPNLKSLQFLNVER--LFSIAD--LDKLEDLSI 232 (479)
Q Consensus 170 ~l~~L~~L~L~~~~i~~lp~---~i~~l~~L~~----------lp~~l~~l~~L~~L~l~~--l~~l~~--l~~L~~L~l 232 (479)
.+++|++|++++|.+++++. .++.+++|+. +|..+..+++|++|++++ +..+.. .++|+.|++
T Consensus 359 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~~~~L~~L~L 438 (549)
T 2z81_A 359 AWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDV 438 (549)
T ss_dssp SSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTCCEEECTTSCCSCCCTTSCTTCSEEEC
T ss_pred ccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhcccccccEEECCCCCcccccchhcCCceEEEC
Confidence 33444444444444443321 2333333332 444455555555555555 222211 145666666
Q ss_pred CCCCCCCCCcccCCCCCCCEEEcCCCCCccCCccCCCCCCCCEEeCCCCcCCccChhhhcCCCchhHHHHHhhhhhh
Q 047943 233 SGRRGLILPPLLSGLSSLTKLVLTCCDVIEIPQDIGCLSSLELLFLCGNNFSKFTCKYQSTFTAEKTLLELLQYATV 309 (479)
Q Consensus 233 ~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~~i~~l~~L~~L~~~L~~n~~ 309 (479)
++|....++ ..+++|++|++++|++..+|. ...+++|+.|+|++|+++.++...+..+++|+.| ++++|.+
T Consensus 439 s~N~l~~~~---~~l~~L~~L~Ls~N~l~~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L--~l~~N~~ 509 (549)
T 2z81_A 439 SNNNLDSFS---LFLPRLQELYISRNKLKTLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKI--WLHTNPW 509 (549)
T ss_dssp CSSCCSCCC---CCCTTCCEEECCSSCCSSCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEE--ECCSSCB
T ss_pred CCCChhhhc---ccCChhcEEECCCCccCcCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEE--EecCCCc
Confidence 666544433 368899999999999999987 4679999999999999998874568999999999 7766653
No 20
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.94 E-value=2.3e-25 Score=230.62 Aligned_cols=296 Identities=22% Similarity=0.318 Sum_probs=217.1
Q ss_pred ccCCCccCceEEEecCCCCCCCCCCCCCCCceEEECCCCCCcccccccCCCCCCcEEEccCCCCCCCCCCCCCCCCCcEE
Q 047943 10 SLEYLPEELRYLHWYEYPLKTLPSNFEPENLLELNLPYSKIETIWEVKKEAPKLKYINLHNSQYLTGMPDLSETPNLERL 89 (479)
Q Consensus 10 ~~~~l~~~Lr~L~~~~~~l~~lp~~~~~~~L~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L 89 (479)
++..++ +|++|+++++.++.+|....+++|++|++++|.+..++. +..+++|+.|++++|. ++.++.+.++++|++|
T Consensus 63 ~~~~l~-~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L 139 (466)
T 1o6v_A 63 GVEYLN-NLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQ-ITDIDPLKNLTNLNRL 139 (466)
T ss_dssp TGGGCT-TCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGGGTTCTTCSEE
T ss_pred chhhhc-CCCEEECCCCccCCchhhhccccCCEEECCCCccccChh-hcCCCCCCEEECCCCC-CCCChHHcCCCCCCEE
Confidence 466666 899999999999999884499999999999999998876 8999999999999985 5566679999999999
Q ss_pred eecCCCCCCCCCccccccCCccccceeeccCCCceecCccccCCCCCCEEeccCCC--------CCCCCCEEecCCCCCC
Q 047943 90 NILNCTNLAYIPSCIHNFNNLRSVIGLCLRNTAIEEVPSSIESLTKLEKLDLSYCT--------RLKGLCKLDLGYCSKF 161 (479)
Q Consensus 90 ~L~~c~~l~~~p~~l~~l~~L~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~--------~L~~L~~L~L~~c~~l 161 (479)
++++|... .++ .+..+++|+.|+++ +.+..++. ++.+++|+.|++++|. ++++|++|++++|...
T Consensus 140 ~l~~n~l~-~~~----~~~~l~~L~~L~l~-~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~ 212 (466)
T 1o6v_A 140 ELSSNTIS-DIS----ALSGLTSLQQLSFG-NQVTDLKP-LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQIS 212 (466)
T ss_dssp EEEEEEEC-CCG----GGTTCTTCSEEEEE-ESCCCCGG-GTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCC
T ss_pred ECCCCccC-CCh----hhccCCcccEeecC-CcccCchh-hccCCCCCEEECcCCcCCCChhhccCCCCCEEEecCCccc
Confidence 99997543 333 23344445556664 33333332 6667777777776653 4556677777766544
Q ss_pred CccchhhhccccCCeeeccCccccccCcccccccCCCCCC---------CCCCCCCCCCeeecCC-----CccccccCCC
Q 047943 162 ECFPEIIEKMERLRSVDLQSTEVEELPSSMENLEGLKDLP---------DSLPNLKSLQFLNVER-----LFSIADLDKL 227 (479)
Q Consensus 162 ~~~p~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~lp---------~~l~~l~~L~~L~l~~-----l~~l~~l~~L 227 (479)
...| ++.+++|++|++++|.+.+++ .+..+++|+.+. ..+..+++|+.|++++ ...+..+++|
T Consensus 213 ~~~~--~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L 289 (466)
T 1o6v_A 213 DITP--LGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTAL 289 (466)
T ss_dssp CCGG--GGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGGGTTCTTC
T ss_pred cccc--ccccCCCCEEECCCCCcccch-hhhcCCCCCEEECCCCccccchhhhcCCCCCEEECCCCccCccccccCCCcc
Confidence 4333 556667777777777666653 345555554410 1156778888888887 3446788899
Q ss_pred ceeecCCCCCCCCCcccCCCCCCCEEEcCCCCCccCCccCCCCCCCCEEeCCCCcCCccChhhhcCCCchhHHHHHhhhh
Q 047943 228 EDLSISGRRGLILPPLLSGLSSLTKLVLTCCDVIEIPQDIGCLSSLELLFLCGNNFSKFTCKYQSTFTAEKTLLELLQYA 307 (479)
Q Consensus 228 ~~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~~i~~l~~L~~L~~~L~~n 307 (479)
+.|++++|....++. +..+++|+.|++++|.+.+++. +..+++|+.|++++|.++.++ .+..+++|+.| ++++|
T Consensus 290 ~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L--~l~~n 363 (466)
T 1o6v_A 290 TNLELNENQLEDISP-ISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFYNNKVSDVS--SLANLTNINWL--SAGHN 363 (466)
T ss_dssp SEEECCSSCCSCCGG-GGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEE--ECCSS
T ss_pred CeEEcCCCcccCchh-hcCCCCCCEEECcCCcCCCchh-hccCccCCEeECCCCccCCch--hhccCCCCCEE--eCCCC
Confidence 999999988776666 6788899999999998888554 678889999999999988876 68888999999 99988
Q ss_pred hhhhccCCccccCCCcccccc
Q 047943 308 TVITRASSSSTLFSCNELQAA 328 (479)
Q Consensus 308 ~~~~~~~~~~~l~~C~~L~~l 328 (479)
.+.+.. .+..+++|+.+
T Consensus 364 ~l~~~~----~~~~l~~L~~L 380 (466)
T 1o6v_A 364 QISDLT----PLANLTRITQL 380 (466)
T ss_dssp CCCBCG----GGTTCTTCCEE
T ss_pred ccCccc----hhhcCCCCCEE
Confidence 875443 25556666544
No 21
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.94 E-value=8.1e-26 Score=239.39 Aligned_cols=310 Identities=22% Similarity=0.245 Sum_probs=217.3
Q ss_pred CccCCCccCceEEEecCCCCCCCCC-CC-CCCCceEEECCCCCCcccc-cccCCCCCCcEEEccCCCCCCCCC-CCCCCC
Q 047943 9 QSLEYLPEELRYLHWYEYPLKTLPS-NF-EPENLLELNLPYSKIETIW-EVKKEAPKLKYINLHNSQYLTGMP-DLSETP 84 (479)
Q Consensus 9 ~~~~~l~~~Lr~L~~~~~~l~~lp~-~~-~~~~L~~L~L~~s~i~~l~-~~~~~l~~L~~L~Ls~~~~l~~~p-~l~~l~ 84 (479)
..+..+|..++.|+++++.++.++. .| .+++|++|++++|+++.++ ..++.+++|++|++++|......| .|++++
T Consensus 21 ~ip~~l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 100 (570)
T 2z63_A 21 KIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLS 100 (570)
T ss_dssp SCCSSSCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCT
T ss_pred ccCCCccccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcc
Confidence 3344566789999999999988865 45 8899999999999988875 567889999999999987444444 588889
Q ss_pred CCcEEeecCCCCCCCCCc-cccccCCccccceeeccCCCcee--cCccccCCCCCCEEeccCCC----------CCCCC-
Q 047943 85 NLERLNILNCTNLAYIPS-CIHNFNNLRSVIGLCLRNTAIEE--VPSSIESLTKLEKLDLSYCT----------RLKGL- 150 (479)
Q Consensus 85 ~L~~L~L~~c~~l~~~p~-~l~~l~~L~~L~~L~L~~~~i~~--lp~~i~~l~~L~~L~L~~c~----------~L~~L- 150 (479)
+|++|++++|.. ..++. .+ .++++|++|++++|.+.. +|..++.+++|+.|+++++. .+++|
T Consensus 101 ~L~~L~L~~n~l-~~l~~~~~---~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 176 (570)
T 2z63_A 101 SLQKLVAVETNL-ASLENFPI---GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP 176 (570)
T ss_dssp TCCEEECTTSCC-CCSTTCSC---TTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCT
T ss_pred cccccccccccc-ccCCCccc---cccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccc
Confidence 999999988653 34333 34 445556668888888874 67888888888888888753 12233
Q ss_pred ---CEEecCCCCCC------------------------------------------------------------------
Q 047943 151 ---CKLDLGYCSKF------------------------------------------------------------------ 161 (479)
Q Consensus 151 ---~~L~L~~c~~l------------------------------------------------------------------ 161 (479)
+.|++++|...
T Consensus 177 ~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~ 256 (570)
T 2z63_A 177 LLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCN 256 (570)
T ss_dssp TCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGG
T ss_pred hhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccc
Confidence 44555544321
Q ss_pred ---------------CccchhhhccccCCeeeccCccccccCcccccccCCCC----------C----------------
Q 047943 162 ---------------ECFPEIIEKMERLRSVDLQSTEVEELPSSMENLEGLKD----------L---------------- 200 (479)
Q Consensus 162 ---------------~~~p~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~----------l---------------- 200 (479)
+..|..+..+++|++|+++++.+.++|..+..+ +|+. +
T Consensus 257 l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n 335 (570)
T 2z63_A 257 LTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFGQFPTLKLKSLKRLTFTSN 335 (570)
T ss_dssp SEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCSSCCBCBCSSCCEEEEESC
T ss_pred cchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCcccccCcccccccCEEeCcCC
Confidence 112344555677778888777777766655433 3222 1
Q ss_pred ------------------------------CCCCCCCCCCCeeecCCC------ccccccCCCceeecCCCCCCCCC--c
Q 047943 201 ------------------------------PDSLPNLKSLQFLNVERL------FSIADLDKLEDLSISGRRGLILP--P 242 (479)
Q Consensus 201 ------------------------------p~~l~~l~~L~~L~l~~l------~~l~~l~~L~~L~l~~~~~~~lp--~ 242 (479)
|..+..+++|++|++++. ..+..+++|++|++++|.....+ .
T Consensus 336 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 415 (570)
T 2z63_A 336 KGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFS 415 (570)
T ss_dssp BSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSC
T ss_pred ccccccccccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchh
Confidence 112223444444444441 22556777777777777743332 3
Q ss_pred ccCCCCCCCEEEcCCCCCcc-CCccCCCCCCCCEEeCCCCcCC--ccChhhhcCCCchhHHHHHhhhhhhhhccCCcccc
Q 047943 243 LLSGLSSLTKLVLTCCDVIE-IPQDIGCLSSLELLFLCGNNFS--KFTCKYQSTFTAEKTLLELLQYATVITRASSSSTL 319 (479)
Q Consensus 243 ~~~~l~~L~~L~L~~~~l~~-lp~~l~~l~~L~~L~Ls~n~l~--~lp~~~i~~l~~L~~L~~~L~~n~~~~~~~~~~~l 319 (479)
.+..+++|++|++++|.+.+ .|..+..+++|+.|++++|.++ .+| ..+..+++|+.| ++++|.+.+..+ ..+
T Consensus 416 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p-~~~~~l~~L~~L--~l~~n~l~~~~~--~~~ 490 (570)
T 2z63_A 416 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP-DIFTELRNLTFL--DLSQCQLEQLSP--TAF 490 (570)
T ss_dssp TTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEEC-SCCTTCTTCCEE--ECTTSCCCEECT--TTT
T ss_pred hhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccch-hhhhcccCCCEE--ECCCCccccCCh--hhh
Confidence 57889999999999999988 7888999999999999999986 688 889999999999 999998865422 245
Q ss_pred CCCcccccc
Q 047943 320 FSCNELQAA 328 (479)
Q Consensus 320 ~~C~~L~~l 328 (479)
.+|++|+.+
T Consensus 491 ~~l~~L~~L 499 (570)
T 2z63_A 491 NSLSSLQVL 499 (570)
T ss_dssp TTCTTCCEE
T ss_pred hcccCCCEE
Confidence 566666654
No 22
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.94 E-value=9.6e-26 Score=227.90 Aligned_cols=269 Identities=16% Similarity=0.205 Sum_probs=221.3
Q ss_pred cCceEEEecCCCCCCCCCCC--CCCCceEEECCCCCCcccc-cccCCCCCCcEEEccCCCCCCCCCC-CCCCCCCcEEee
Q 047943 16 EELRYLHWYEYPLKTLPSNF--EPENLLELNLPYSKIETIW-EVKKEAPKLKYINLHNSQYLTGMPD-LSETPNLERLNI 91 (479)
Q Consensus 16 ~~Lr~L~~~~~~l~~lp~~~--~~~~L~~L~L~~s~i~~l~-~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L 91 (479)
.++|+|++.++.++.+|..+ .+++|++|+++++.++.++ ..+..+++|+.|++++|......|. +.++++|++|++
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 124 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 124 (390)
T ss_dssp CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEEC
Confidence 48999999999999999874 7899999999999999876 4789999999999999975555554 899999999999
Q ss_pred cCCCCCCCCCccccccCCccccceeeccCCCceecC-ccccCCCCCCEEeccCCC-------CCCCCCEEecCCCCCCCc
Q 047943 92 LNCTNLAYIPSCIHNFNNLRSVIGLCLRNTAIEEVP-SSIESLTKLEKLDLSYCT-------RLKGLCKLDLGYCSKFEC 163 (479)
Q Consensus 92 ~~c~~l~~~p~~l~~l~~L~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~c~-------~L~~L~~L~L~~c~~l~~ 163 (479)
++|. +..+|..+ +.++++|++|++++|.+..++ ..++.+++|+.|+++++. .+++|+.|++++|....
T Consensus 125 ~~n~-l~~l~~~~--~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~- 200 (390)
T 3o6n_A 125 ERND-LSSLPRGI--FHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLST- 200 (390)
T ss_dssp CSSC-CCCCCTTT--TTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSE-
T ss_pred CCCc-cCcCCHHH--hcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccc-
Confidence 9975 44565543 234555667999999998775 458899999999999863 56788999998865432
Q ss_pred cchhhhccccCCeeeccCccccccCcccccccCCCCCCCCCCCCCCCCeeecCC-----CccccccCCCceeecCCCCCC
Q 047943 164 FPEIIEKMERLRSVDLQSTEVEELPSSMENLEGLKDLPDSLPNLKSLQFLNVER-----LFSIADLDKLEDLSISGRRGL 238 (479)
Q Consensus 164 ~p~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~lp~~l~~l~~L~~L~l~~-----l~~l~~l~~L~~L~l~~~~~~ 238 (479)
+ ....+|++|++++|.+..+|..+ .++|+.|++++ ...+..+++|++|++++|...
T Consensus 201 ~----~~~~~L~~L~l~~n~l~~~~~~~---------------~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~ 261 (390)
T 3o6n_A 201 L----AIPIAVEELDASHNSINVVRGPV---------------NVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELE 261 (390)
T ss_dssp E----ECCSSCSEEECCSSCCCEEECCC---------------CSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCC
T ss_pred c----CCCCcceEEECCCCeeeeccccc---------------cccccEEECCCCCCcccHHHcCCCCccEEECCCCcCC
Confidence 2 23457899999999888765421 35788888877 366778899999999999854
Q ss_pred C-CCcccCCCCCCCEEEcCCCCCccCCccCCCCCCCCEEeCCCCcCCccChhhhcCCCchhHHHHHhhhhhhh
Q 047943 239 I-LPPLLSGLSSLTKLVLTCCDVIEIPQDIGCLSSLELLFLCGNNFSKFTCKYQSTFTAEKTLLELLQYATVI 310 (479)
Q Consensus 239 ~-lp~~~~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~~i~~l~~L~~L~~~L~~n~~~ 310 (479)
. .|..+..+++|+.|++++|.+.++|..+..+++|+.|++++|+++.+| ..+..+++|+.| ++++|.+.
T Consensus 262 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~l~~L~~L--~L~~N~i~ 331 (390)
T 3o6n_A 262 KIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVE-RNQPQFDRLENL--YLDHNSIV 331 (390)
T ss_dssp EEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCCCCG-GGHHHHTTCSEE--ECCSSCCC
T ss_pred CcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcceecC-ccccccCcCCEE--ECCCCccc
Confidence 4 477788999999999999999998888889999999999999999999 888899999999 88888764
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.94 E-value=2.3e-25 Score=235.99 Aligned_cols=135 Identities=20% Similarity=0.220 Sum_probs=80.6
Q ss_pred eEEEecCCCCCCCCCCCCCCCceEEECCCCCCcccc-cccCCCCCCcEEEccCCCCCCCCC-CCCCCCCCcEEeecCCCC
Q 047943 19 RYLHWYEYPLKTLPSNFEPENLLELNLPYSKIETIW-EVKKEAPKLKYINLHNSQYLTGMP-DLSETPNLERLNILNCTN 96 (479)
Q Consensus 19 r~L~~~~~~l~~lp~~~~~~~L~~L~L~~s~i~~l~-~~~~~l~~L~~L~Ls~~~~l~~~p-~l~~l~~L~~L~L~~c~~ 96 (479)
++++++++.++.+|..+. ++|++|++++|+++.++ ..+..+++|++|++++|......| .|.++++|++|++++|.
T Consensus 34 ~~l~ls~~~L~~ip~~~~-~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~- 111 (562)
T 3a79_B 34 SMVDYSNRNLTHVPKDLP-PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNR- 111 (562)
T ss_dssp CEEECTTSCCCSCCTTSC-TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSC-
T ss_pred cEEEcCCCCCccCCCCCC-CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCc-
Confidence 566666666666666442 56666677666666654 456666667777776665433334 36666666777766654
Q ss_pred CCCCCccccccCCccccceeeccCCCceecC--ccccCCCCCCEEeccCCC-------CCCCC--CEEecCCCCC
Q 047943 97 LAYIPSCIHNFNNLRSVIGLCLRNTAIEEVP--SSIESLTKLEKLDLSYCT-------RLKGL--CKLDLGYCSK 160 (479)
Q Consensus 97 l~~~p~~l~~l~~L~~L~~L~L~~~~i~~lp--~~i~~l~~L~~L~L~~c~-------~L~~L--~~L~L~~c~~ 160 (479)
+..+|.. .+++|++|++++|.+..++ ..++.+++|+.|+++++. .+++| +.|++++|..
T Consensus 112 l~~lp~~-----~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 112 LQNISCC-----PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp CCEECSC-----CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGTTSCEEEEEEEESSC
T ss_pred CCccCcc-----ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCchhhhhhceeeEEEeecccc
Confidence 3345544 3555556666666666543 566666666666666542 22333 6666666544
No 24
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.94 E-value=1.6e-26 Score=242.47 Aligned_cols=292 Identities=16% Similarity=0.169 Sum_probs=188.1
Q ss_pred CccCCCccCceEEEecCCCCCCC-CCCC-CCCCceEEECCCCCCcccccccCCCCCCcEEEccCCCCCC-CCC-CCCCCC
Q 047943 9 QSLEYLPEELRYLHWYEYPLKTL-PSNF-EPENLLELNLPYSKIETIWEVKKEAPKLKYINLHNSQYLT-GMP-DLSETP 84 (479)
Q Consensus 9 ~~~~~l~~~Lr~L~~~~~~l~~l-p~~~-~~~~L~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~-~~p-~l~~l~ 84 (479)
+.+..++ +|++|+++++.++.+ |..| .+++|++|+|++|+++.+|.. .+++|++|++++|.... .+| .+++++
T Consensus 39 ~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~ 115 (520)
T 2z7x_B 39 SDILSLS-KLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMS 115 (520)
T ss_dssp HHHTTCT-TCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCT
T ss_pred hhccccc-cccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc--ccCCccEEeccCCccccccchhhhccCC
Confidence 3455666 688888888877776 4455 777888888888887777766 67788888888776544 344 467777
Q ss_pred CCcEEeecCCCCC-------------------------CCCCccccccC-----------------------Ccc-----
Q 047943 85 NLERLNILNCTNL-------------------------AYIPSCIHNFN-----------------------NLR----- 111 (479)
Q Consensus 85 ~L~~L~L~~c~~l-------------------------~~~p~~l~~l~-----------------------~L~----- 111 (479)
+|++|++++|... ...|..+..+. +++
T Consensus 116 ~L~~L~L~~n~l~~~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L 195 (520)
T 2z7x_B 116 QLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELS 195 (520)
T ss_dssp TCCEEEEEESSCCGGGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEEC
T ss_pred cceEEEecCcccchhhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeec
Confidence 7777777765432 22233332221 111
Q ss_pred ----------------------------------------------------ccceeeccCCCce-ecCccc-----cCC
Q 047943 112 ----------------------------------------------------SVIGLCLRNTAIE-EVPSSI-----ESL 133 (479)
Q Consensus 112 ----------------------------------------------------~L~~L~L~~~~i~-~lp~~i-----~~l 133 (479)
+|+.|++++|.+. .+|..+ +.+
T Consensus 196 ~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l 275 (520)
T 2z7x_B 196 NIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSL 275 (520)
T ss_dssp CEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCC
T ss_pred cccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccC
Confidence 3444444444444 455554 445
Q ss_pred CCCCEEeccCCCC-C-----------CCCCEEecCCCCCCCccchhhhccccCCeeeccCccccc-cCcccccccCCCC-
Q 047943 134 TKLEKLDLSYCTR-L-----------KGLCKLDLGYCSKFECFPEIIEKMERLRSVDLQSTEVEE-LPSSMENLEGLKD- 199 (479)
Q Consensus 134 ~~L~~L~L~~c~~-L-----------~~L~~L~L~~c~~l~~~p~~~~~l~~L~~L~L~~~~i~~-lp~~i~~l~~L~~- 199 (479)
++|+.++++++.- + .+|+.|++++|...... ....+++|++|++++|.+.+ +|..++.+++|+.
T Consensus 276 ~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 353 (520)
T 2z7x_B 276 KALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETL 353 (520)
T ss_dssp CEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEE
T ss_pred ceeEeccccccceecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEE
Confidence 5444444433210 0 12344444443322110 01345556666666666555 4555555555544
Q ss_pred ------------CCCCCCCCCCCCeeecCC--Cc------cccccCCCceeecCCCCC-CCCCcccCCCCCCCEEEcCCC
Q 047943 200 ------------LPDSLPNLKSLQFLNVER--LF------SIADLDKLEDLSISGRRG-LILPPLLSGLSSLTKLVLTCC 258 (479)
Q Consensus 200 ------------lp~~l~~l~~L~~L~l~~--l~------~l~~l~~L~~L~l~~~~~-~~lp~~~~~l~~L~~L~L~~~ 258 (479)
+|..+..+++|++|++++ +. .+..+++|++|++++|.. ...|..+. ++|+.|++++|
T Consensus 354 ~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N 431 (520)
T 2z7x_B 354 ILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSN 431 (520)
T ss_dssp ECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSS
T ss_pred EccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCC
Confidence 223466788999999988 32 356789999999999985 44554432 79999999999
Q ss_pred CCccCCccCCCCCCCCEEeCCCCcCCccChhhhcCCCchhHHHHHhhhhhh
Q 047943 259 DVIEIPQDIGCLSSLELLFLCGNNFSKFTCKYQSTFTAEKTLLELLQYATV 309 (479)
Q Consensus 259 ~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~~i~~l~~L~~L~~~L~~n~~ 309 (479)
.+.++|..+..+++|+.|++++|+++.+|...+..+++|++| ++++|++
T Consensus 432 ~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L--~l~~N~~ 480 (520)
T 2z7x_B 432 KIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKI--WLHTNPW 480 (520)
T ss_dssp CCCCCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE--ECCSSCB
T ss_pred cccccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEE--ECcCCCC
Confidence 999999988899999999999999999993348899999999 7777654
No 25
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.93 E-value=5.1e-25 Score=218.78 Aligned_cols=273 Identities=22% Similarity=0.337 Sum_probs=231.0
Q ss_pred CccCCCccCceEEEecCCCCCCCCCCCCCCCceEEECCCCCCcccccccCCCCCCcEEEccCCCCCCCCCCCCCCCCCcE
Q 047943 9 QSLEYLPEELRYLHWYEYPLKTLPSNFEPENLLELNLPYSKIETIWEVKKEAPKLKYINLHNSQYLTGMPDLSETPNLER 88 (479)
Q Consensus 9 ~~~~~l~~~Lr~L~~~~~~l~~lp~~~~~~~L~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~ 88 (479)
+++..++ +|++|+++++.++.+|....+++|++|++++|.++.++ .+..+++|+.|++++|. +..++.+..+++|++
T Consensus 60 ~~~~~~~-~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~~n~-i~~~~~~~~l~~L~~ 136 (347)
T 4fmz_A 60 QGIEYLT-NLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNEDN-ISDISPLANLTKMYS 136 (347)
T ss_dssp TTGGGCT-TCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECTTSC-CCCCGGGTTCTTCCE
T ss_pred hhhhhcC-CccEEEccCCccccchhhhcCCcCCEEEccCCcccCch-HHcCCCcCCEEECcCCc-ccCchhhccCCceeE
Confidence 3467776 89999999999999988449999999999999999885 68999999999999986 556666999999999
Q ss_pred EeecCCCCCCCCCccccccCCccccceeeccCCCceecCccccCCCCCCEEeccCCC--------CCCCCCEEecCCCCC
Q 047943 89 LNILNCTNLAYIPSCIHNFNNLRSVIGLCLRNTAIEEVPSSIESLTKLEKLDLSYCT--------RLKGLCKLDLGYCSK 160 (479)
Q Consensus 89 L~L~~c~~l~~~p~~l~~l~~L~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~--------~L~~L~~L~L~~c~~ 160 (479)
|++++|......+. +..++.|+.|++++|.+..++. ++.+++|+.|++++|. .+++|+.|++++|..
T Consensus 137 L~l~~n~~~~~~~~----~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l 211 (347)
T 4fmz_A 137 LNLGANHNLSDLSP----LSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQI 211 (347)
T ss_dssp EECTTCTTCCCCGG----GTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred EECCCCCCcccccc----hhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCcccccccccCCCccceeecccCCC
Confidence 99999977665443 5666777889999999988876 8899999999999864 577899999999866
Q ss_pred CCccchhhhccccCCeeeccCccccccCcccccccCCCCCCCCCCCCCCCCeeecCC-----CccccccCCCceeecCCC
Q 047943 161 FECFPEIIEKMERLRSVDLQSTEVEELPSSMENLEGLKDLPDSLPNLKSLQFLNVER-----LFSIADLDKLEDLSISGR 235 (479)
Q Consensus 161 l~~~p~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~lp~~l~~l~~L~~L~l~~-----l~~l~~l~~L~~L~l~~~ 235 (479)
....+ +..+++|++|++++|.+.+++. +..+++|++|++++ ++.+..+++|++|++++|
T Consensus 212 ~~~~~--~~~~~~L~~L~l~~n~l~~~~~--------------~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n 275 (347)
T 4fmz_A 212 TDITP--VANMTRLNSLKIGNNKITDLSP--------------LANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSN 275 (347)
T ss_dssp CCCGG--GGGCTTCCEEECCSSCCCCCGG--------------GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSS
T ss_pred CCCch--hhcCCcCCEEEccCCccCCCcc--------------hhcCCCCCEEECCCCccCCChhHhcCCCcCEEEccCC
Confidence 55433 7889999999999999988764 34567788888877 356788999999999999
Q ss_pred CCCCCCcccCCCCCCCEEEcCCCCCcc-CCccCCCCCCCCEEeCCCCcCCccChhhhcCCCchhHHHHHhhhhhhh
Q 047943 236 RGLILPPLLSGLSSLTKLVLTCCDVIE-IPQDIGCLSSLELLFLCGNNFSKFTCKYQSTFTAEKTLLELLQYATVI 310 (479)
Q Consensus 236 ~~~~lp~~~~~l~~L~~L~L~~~~l~~-lp~~l~~l~~L~~L~Ls~n~l~~lp~~~i~~l~~L~~L~~~L~~n~~~ 310 (479)
....++. +..+++|+.|++++|.+.+ .|..++.+++|+.|++++|+++.++ . +..+++|++| ++++|.+.
T Consensus 276 ~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~-~-~~~l~~L~~L--~l~~N~i~ 346 (347)
T 4fmz_A 276 QISDISV-LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIR-P-LASLSKMDSA--DFANQVIK 346 (347)
T ss_dssp CCCCCGG-GGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCG-G-GGGCTTCSEE--SSSCC---
T ss_pred ccCCChh-hcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCcccccc-C-hhhhhcccee--ehhhhccc
Confidence 9777754 7889999999999999987 6677889999999999999999998 4 8899999999 99999763
No 26
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.93 E-value=5.8e-25 Score=228.08 Aligned_cols=290 Identities=18% Similarity=0.179 Sum_probs=233.4
Q ss_pred ceEEEecCCCCCCCCCCCCCCCceEEECCCCCCcccc-cccCCCCCCcEEEccCCCCCCCCC-CCCCCCCCcEEeecCCC
Q 047943 18 LRYLHWYEYPLKTLPSNFEPENLLELNLPYSKIETIW-EVKKEAPKLKYINLHNSQYLTGMP-DLSETPNLERLNILNCT 95 (479)
Q Consensus 18 Lr~L~~~~~~l~~lp~~~~~~~L~~L~L~~s~i~~l~-~~~~~l~~L~~L~Ls~~~~l~~~p-~l~~l~~L~~L~L~~c~ 95 (479)
-+.++.++..++.+|..+ ++++++|+|++|+++.++ ..+..+++|+.|+|++|......| .|.++++|++|+|++|.
T Consensus 13 ~~~v~c~~~~l~~ip~~~-~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~ 91 (477)
T 2id5_A 13 DRAVLCHRKRFVAVPEGI-PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91 (477)
T ss_dssp TTEEECCSCCCSSCCSCC-CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CCEEEeCCCCcCcCCCCC-CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc
Confidence 467888888999999866 578999999999999884 678999999999999996555545 58999999999999975
Q ss_pred CCCCCCc-cccccCCccccceeeccCCCceec-CccccCCCCCCEEeccCC----------CCCCCCCEEecCCCCCCCc
Q 047943 96 NLAYIPS-CIHNFNNLRSVIGLCLRNTAIEEV-PSSIESLTKLEKLDLSYC----------TRLKGLCKLDLGYCSKFEC 163 (479)
Q Consensus 96 ~l~~~p~-~l~~l~~L~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~c----------~~L~~L~~L~L~~c~~l~~ 163 (479)
+..+|. .+.+ +++|+.|++++|.+..+ +..+..+++|+.|+++++ .++++|++|++++|.....
T Consensus 92 -l~~~~~~~~~~---l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 167 (477)
T 2id5_A 92 -LKLIPLGVFTG---LSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSI 167 (477)
T ss_dssp -CCSCCTTSSTT---CTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSC
T ss_pred -CCccCcccccC---CCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCccc
Confidence 445554 3444 55667799999999866 567899999999999875 3678899999999876665
Q ss_pred cchhhhccccCCeeeccCccccccCcccccccCCCCCCCCCCCCCCCCeeecCCC-------ccccccCCCceeecCCCC
Q 047943 164 FPEIIEKMERLRSVDLQSTEVEELPSSMENLEGLKDLPDSLPNLKSLQFLNVERL-------FSIADLDKLEDLSISGRR 236 (479)
Q Consensus 164 ~p~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~lp~~l~~l~~L~~L~l~~l-------~~l~~l~~L~~L~l~~~~ 236 (479)
.+..+.++++|+.|++++|.+..++. ..+..+++|+.|++++. .......+|+.|++++|.
T Consensus 168 ~~~~l~~l~~L~~L~l~~n~i~~~~~------------~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~ 235 (477)
T 2id5_A 168 PTEALSHLHGLIVLRLRHLNINAIRD------------YSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCN 235 (477)
T ss_dssp CHHHHTTCTTCCEEEEESCCCCEECT------------TCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSC
T ss_pred ChhHhcccCCCcEEeCCCCcCcEeCh------------hhcccCcccceeeCCCCccccccCcccccCccccEEECcCCc
Confidence 55678999999999999998887653 34566788999998873 223334589999999999
Q ss_pred CCCCCc-ccCCCCCCCEEEcCCCCCcc-CCccCCCCCCCCEEeCCCCcCCccChhhhcCCCchhHHHHHhhhhhhhhccC
Q 047943 237 GLILPP-LLSGLSSLTKLVLTCCDVIE-IPQDIGCLSSLELLFLCGNNFSKFTCKYQSTFTAEKTLLELLQYATVITRAS 314 (479)
Q Consensus 237 ~~~lp~-~~~~l~~L~~L~L~~~~l~~-lp~~l~~l~~L~~L~Ls~n~l~~lp~~~i~~l~~L~~L~~~L~~n~~~~~~~ 314 (479)
...+|. .+..+++|+.|++++|.+.+ .+..+..+++|+.|+|++|.++.++...+..+++|+.| ++++|.+.+...
T Consensus 236 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L--~L~~N~l~~~~~ 313 (477)
T 2id5_A 236 LTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVL--NVSGNQLTTLEE 313 (477)
T ss_dssp CCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEE--ECCSSCCSCCCG
T ss_pred ccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEE--ECCCCcCceeCH
Confidence 888884 57889999999999999998 45678999999999999999997754789999999999 999987753221
Q ss_pred CccccCCCcccccc
Q 047943 315 SSSTLFSCNELQAA 328 (479)
Q Consensus 315 ~~~~l~~C~~L~~l 328 (479)
..+..|++|+.+
T Consensus 314 --~~~~~l~~L~~L 325 (477)
T 2id5_A 314 --SVFHSVGNLETL 325 (477)
T ss_dssp --GGBSCGGGCCEE
T ss_pred --hHcCCCcccCEE
Confidence 134556666554
No 27
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.93 E-value=5.1e-25 Score=222.58 Aligned_cols=275 Identities=19% Similarity=0.231 Sum_probs=224.7
Q ss_pred cCCc-cCCCccCceEEEecCCCCCCCCC-CC-CCCCceEEECCCCCCcccc-cccCCCCCCcEEEccCCCCCCCCC-C-C
Q 047943 7 IDQS-LEYLPEELRYLHWYEYPLKTLPS-NF-EPENLLELNLPYSKIETIW-EVKKEAPKLKYINLHNSQYLTGMP-D-L 80 (479)
Q Consensus 7 ~~~~-~~~l~~~Lr~L~~~~~~l~~lp~-~~-~~~~L~~L~L~~s~i~~l~-~~~~~l~~L~~L~Ls~~~~l~~~p-~-l 80 (479)
+|.. +..++ +|++|+++++.++.++. .| .+++|++|++++|.++.++ ..++.+++|+.|++++|.. +.+| . +
T Consensus 60 l~~~~~~~l~-~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~l~~~~~ 137 (390)
T 3o6n_A 60 LPAALLDSFR-QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDL-SSLPRGIF 137 (390)
T ss_dssp ECTHHHHHCC-CCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTT
T ss_pred CChhHhcccc-cCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCcc-CcCCHHHh
Confidence 4443 45556 89999999999998876 55 8999999999999999875 5589999999999999864 4666 3 6
Q ss_pred CCCCCCcEEeecCCCCCCCCCccccccCCccccceeeccCCCceecCccccCCCCCCEEeccCCC-----CCCCCCEEec
Q 047943 81 SETPNLERLNILNCTNLAYIPSCIHNFNNLRSVIGLCLRNTAIEEVPSSIESLTKLEKLDLSYCT-----RLKGLCKLDL 155 (479)
Q Consensus 81 ~~l~~L~~L~L~~c~~l~~~p~~l~~l~~L~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~-----~L~~L~~L~L 155 (479)
.++++|++|++++|......+..+.+ ++.|+.|++++|.+..++ ++.+++|+.|+++++. ...+|+.|++
T Consensus 138 ~~l~~L~~L~L~~n~l~~~~~~~~~~---l~~L~~L~l~~n~l~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l 212 (390)
T 3o6n_A 138 HNTPKLTTLSMSNNNLERIEDDTFQA---TTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLSTLAIPIAVEELDA 212 (390)
T ss_dssp TTCTTCCEEECCSSCCCBCCTTTTSS---CTTCCEEECCSSCCSBCC--GGGCTTCSEEECCSSCCSEEECCSSCSEEEC
T ss_pred cCCCCCcEEECCCCccCccChhhccC---CCCCCEEECCCCcCCccc--cccccccceeecccccccccCCCCcceEEEC
Confidence 89999999999998765544555554 455677999999998875 6788999999999863 4567899999
Q ss_pred CCCCCCCccchhhhccccCCeeeccCccccccCcccccccCCCCCCCCCCCCCCCCeeecCC--C-----ccccccCCCc
Q 047943 156 GYCSKFECFPEIIEKMERLRSVDLQSTEVEELPSSMENLEGLKDLPDSLPNLKSLQFLNVER--L-----FSIADLDKLE 228 (479)
Q Consensus 156 ~~c~~l~~~p~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~lp~~l~~l~~L~~L~l~~--l-----~~l~~l~~L~ 228 (479)
++|... .+|.. ..++|+.|++++|.+.+.+ .+..+++|++|++++ + ..+..+++|+
T Consensus 213 ~~n~l~-~~~~~--~~~~L~~L~l~~n~l~~~~--------------~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 275 (390)
T 3o6n_A 213 SHNSIN-VVRGP--VNVELTILKLQHNNLTDTA--------------WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLE 275 (390)
T ss_dssp CSSCCC-EEECC--CCSSCCEEECCSSCCCCCG--------------GGGGCTTCSEEECCSSCCCEEESGGGTTCSSCC
T ss_pred CCCeee-ecccc--ccccccEEECCCCCCcccH--------------HHcCCCCccEEECCCCcCCCcChhHccccccCC
Confidence 997654 33432 3468999999999988753 234567788899887 1 4677899999
Q ss_pred eeecCCCCCCCCCcccCCCCCCCEEEcCCCCCccCCccCCCCCCCCEEeCCCCcCCccChhhhcCCCchhHHHHHhhhhh
Q 047943 229 DLSISGRRGLILPPLLSGLSSLTKLVLTCCDVIEIPQDIGCLSSLELLFLCGNNFSKFTCKYQSTFTAEKTLLELLQYAT 308 (479)
Q Consensus 229 ~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~~i~~l~~L~~L~~~L~~n~ 308 (479)
+|++++|....+|..+..+++|++|++++|.+.++|..+..+++|+.|++++|.++.++ +..+++|+.| ++++|+
T Consensus 276 ~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i~~~~---~~~~~~L~~L--~l~~N~ 350 (390)
T 3o6n_A 276 RLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNL--TLSHND 350 (390)
T ss_dssp EEECCSSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEE--ECCSSC
T ss_pred EEECCCCcCcccCcccCCCCCCCEEECCCCcceecCccccccCcCCEEECCCCccceeC---chhhccCCEE--EcCCCC
Confidence 99999999888888788899999999999999999988889999999999999999887 6678899999 777776
Q ss_pred hh
Q 047943 309 VI 310 (479)
Q Consensus 309 ~~ 310 (479)
+.
T Consensus 351 ~~ 352 (390)
T 3o6n_A 351 WD 352 (390)
T ss_dssp EE
T ss_pred cc
Confidence 53
No 28
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.93 E-value=3.2e-25 Score=234.92 Aligned_cols=277 Identities=15% Similarity=0.132 Sum_probs=171.8
Q ss_pred CccCCCccCceEEEecCCCCCCCC-CCC-CCCCceEEECCCCCCcccccccCCCCCCcEEEccCCCCCC-CCC-CCCCCC
Q 047943 9 QSLEYLPEELRYLHWYEYPLKTLP-SNF-EPENLLELNLPYSKIETIWEVKKEAPKLKYINLHNSQYLT-GMP-DLSETP 84 (479)
Q Consensus 9 ~~~~~l~~~Lr~L~~~~~~l~~lp-~~~-~~~~L~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~-~~p-~l~~l~ 84 (479)
+.+..++ +|++|++++|.++.++ ..| .+++|++|+|++|+++.+|.. .+++|+.|++++|.... ..| .+.+++
T Consensus 70 ~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~ 146 (562)
T 3a79_B 70 PDISFLS-ELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLT 146 (562)
T ss_dssp GGTTTCT-TCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCT
T ss_pred hhhccCC-CccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc--ccccCCEEECCCCCccccCchHhhcccC
Confidence 5677777 8999999999998884 456 789999999999999988877 89999999999987544 233 588899
Q ss_pred CCcEEeecCCCCCCCCCccccccCCccccceeeccCCCc--e-ecCcccc--------------------------CCCC
Q 047943 85 NLERLNILNCTNLAYIPSCIHNFNNLRSVIGLCLRNTAI--E-EVPSSIE--------------------------SLTK 135 (479)
Q Consensus 85 ~L~~L~L~~c~~l~~~p~~l~~l~~L~~L~~L~L~~~~i--~-~lp~~i~--------------------------~l~~ 135 (479)
+|++|++++|.... ..+..+.++ .|+.|++++|.+ . ..|..+. .+++
T Consensus 147 ~L~~L~L~~n~l~~---~~~~~l~~L-~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~ 222 (562)
T 3a79_B 147 KLTFLGLSAAKFRQ---LDLLPVAHL-HLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGH 222 (562)
T ss_dssp TCCEEEEECSBCCT---TTTGGGTTS-CEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEE
T ss_pred cccEEecCCCcccc---Cchhhhhhc-eeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccce
Confidence 99999999875432 234444444 446666666655 2 1122222 2223
Q ss_pred CCEEeccCCC-----------------------------------------CCCCCCEEecCCCCCCCccchhh------
Q 047943 136 LEKLDLSYCT-----------------------------------------RLKGLCKLDLGYCSKFECFPEII------ 168 (479)
Q Consensus 136 L~~L~L~~c~-----------------------------------------~L~~L~~L~L~~c~~l~~~p~~~------ 168 (479)
|+.|+++++. ...+|++|++++|...+.+|..+
T Consensus 223 L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~ 302 (562)
T 3a79_B 223 LQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSET 302 (562)
T ss_dssp EEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSC
T ss_pred EEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccc
Confidence 3333333321 01144444444443332222211
Q ss_pred -----------------------------------------------hccccCCeeeccCccccc-cCcccccccCCCCC
Q 047943 169 -----------------------------------------------EKMERLRSVDLQSTEVEE-LPSSMENLEGLKDL 200 (479)
Q Consensus 169 -----------------------------------------------~~l~~L~~L~L~~~~i~~-lp~~i~~l~~L~~l 200 (479)
+.+++|++|++++|.+.+ +|.
T Consensus 303 ~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~----------- 371 (562)
T 3a79_B 303 ALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQ----------- 371 (562)
T ss_dssp SCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTT-----------
T ss_pred cchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCCCccccchhh-----------
Confidence 566778888888877776 443
Q ss_pred CCCCCCCCCCCeeecCC--Cc-------cccccCCCceeecCCCCCCC-CCc-ccCCCCCCCEEEcCCCCCcc-CCccCC
Q 047943 201 PDSLPNLKSLQFLNVER--LF-------SIADLDKLEDLSISGRRGLI-LPP-LLSGLSSLTKLVLTCCDVIE-IPQDIG 268 (479)
Q Consensus 201 p~~l~~l~~L~~L~l~~--l~-------~l~~l~~L~~L~l~~~~~~~-lp~-~~~~l~~L~~L~L~~~~l~~-lp~~l~ 268 (479)
.+.++++|+.|++++ +. .+..+++|+.|++++|.... +|. .+..+++|++|++++|.+++ +|..+.
T Consensus 372 --~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~ 449 (562)
T 3a79_B 372 --GCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP 449 (562)
T ss_dssp --TCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC
T ss_pred --hhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc
Confidence 344455566666655 11 24556667777777666443 444 25556667777777766654 444332
Q ss_pred CCCCCCEEeCCCCcCCccChhhhcCCCchhHHHHHhhhhhhh
Q 047943 269 CLSSLELLFLCGNNFSKFTCKYQSTFTAEKTLLELLQYATVI 310 (479)
Q Consensus 269 ~l~~L~~L~Ls~n~l~~lp~~~i~~l~~L~~L~~~L~~n~~~ 310 (479)
++|+.|++++|+++.+| ..+..+++|+.| ++++|.+.
T Consensus 450 --~~L~~L~L~~N~l~~ip-~~~~~l~~L~~L--~L~~N~l~ 486 (562)
T 3a79_B 450 --PKVKVLDLHNNRIMSIP-KDVTHLQALQEL--NVASNQLK 486 (562)
T ss_dssp --TTCSEEECCSSCCCCCC-TTTTSSCCCSEE--ECCSSCCC
T ss_pred --CcCCEEECCCCcCcccC-hhhcCCCCCCEE--ECCCCCCC
Confidence 56677777777666666 555566667777 67666654
No 29
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.93 E-value=1.5e-24 Score=234.81 Aligned_cols=82 Identities=24% Similarity=0.457 Sum_probs=44.9
Q ss_pred CCccCceEEEecCCCCCCCCCC-C-CCCCceEEECCCCCCccc-ccccCCCCCCcEEEccCCCCCCCCC--CCCCCCCCc
Q 047943 13 YLPEELRYLHWYEYPLKTLPSN-F-EPENLLELNLPYSKIETI-WEVKKEAPKLKYINLHNSQYLTGMP--DLSETPNLE 87 (479)
Q Consensus 13 ~l~~~Lr~L~~~~~~l~~lp~~-~-~~~~L~~L~L~~s~i~~l-~~~~~~l~~L~~L~Ls~~~~l~~~p--~l~~l~~L~ 87 (479)
.+|.++++|+++++.++.+|.. | .+++|++|+|++|.+..+ +..++.+++|++|++++|. +..+| .|.++++|+
T Consensus 22 ~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~ 100 (680)
T 1ziw_A 22 DLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE-LSQLSDKTFAFCTNLT 100 (680)
T ss_dssp CSCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSC-CCCCCTTTTTTCTTCS
T ss_pred ccCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCc-cCccChhhhccCCCCC
Confidence 3445666666666666666543 3 556666666666655544 3344555555555555553 22333 255555555
Q ss_pred EEeecCCC
Q 047943 88 RLNILNCT 95 (479)
Q Consensus 88 ~L~L~~c~ 95 (479)
+|++++|.
T Consensus 101 ~L~L~~n~ 108 (680)
T 1ziw_A 101 ELHLMSNS 108 (680)
T ss_dssp EEECCSSC
T ss_pred EEECCCCc
Confidence 55555543
No 30
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=4.9e-25 Score=235.16 Aligned_cols=268 Identities=16% Similarity=0.194 Sum_probs=215.6
Q ss_pred cCceEEEecCCCCCCCCCCC--CCCCceEEECCCCCCcccc-cccCCCCCCcEEEccCCCCCCCCC-CCCCCCCCcEEee
Q 047943 16 EELRYLHWYEYPLKTLPSNF--EPENLLELNLPYSKIETIW-EVKKEAPKLKYINLHNSQYLTGMP-DLSETPNLERLNI 91 (479)
Q Consensus 16 ~~Lr~L~~~~~~l~~lp~~~--~~~~L~~L~L~~s~i~~l~-~~~~~l~~L~~L~Ls~~~~l~~~p-~l~~l~~L~~L~L 91 (479)
..++.+++.++.++.+|..+ .+++|++|+|++|.+..++ ..+..+++|+.|+|++|......| .|+++++|++|+|
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 130 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 130 (597)
T ss_dssp CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEe
Confidence 47899999999999999874 7899999999999999876 478999999999999997555445 3799999999999
Q ss_pred cCCCCCCCCCcc-ccccCCccccceeeccCCCceecCc-cccCCCCCCEEeccCCC-------CCCCCCEEecCCCCCCC
Q 047943 92 LNCTNLAYIPSC-IHNFNNLRSVIGLCLRNTAIEEVPS-SIESLTKLEKLDLSYCT-------RLKGLCKLDLGYCSKFE 162 (479)
Q Consensus 92 ~~c~~l~~~p~~-l~~l~~L~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~c~-------~L~~L~~L~L~~c~~l~ 162 (479)
++|.. ..+|.. +++ +++|+.|++++|.+..+++ .++.+++|+.|++++|. .+++|+.|++++|....
T Consensus 131 ~~n~l-~~l~~~~~~~---l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~ 206 (597)
T 3oja_B 131 ERNDL-SSLPRGIFHN---TPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLST 206 (597)
T ss_dssp CSSCC-CCCCTTTTTT---CTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSE
T ss_pred eCCCC-CCCCHHHhcc---CCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCcccc
Confidence 99754 455554 344 4556669999999987754 68999999999999863 56788899998875432
Q ss_pred ccchhhhccccCCeeeccCccccccCcccccccCCCCCCCCCCCCCCCCeeecCC-----CccccccCCCceeecCCCCC
Q 047943 163 CFPEIIEKMERLRSVDLQSTEVEELPSSMENLEGLKDLPDSLPNLKSLQFLNVER-----LFSIADLDKLEDLSISGRRG 237 (479)
Q Consensus 163 ~~p~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~lp~~l~~l~~L~~L~l~~-----l~~l~~l~~L~~L~l~~~~~ 237 (479)
+ ....+|+.|++++|.+..++..+ ..+|+.|++++ ...+..+++|+.|++++|..
T Consensus 207 -l----~~~~~L~~L~ls~n~l~~~~~~~---------------~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l 266 (597)
T 3oja_B 207 -L----AIPIAVEELDASHNSINVVRGPV---------------NVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNEL 266 (597)
T ss_dssp -E----ECCTTCSEEECCSSCCCEEECSC---------------CSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCC
T ss_pred -c----cCCchhheeeccCCccccccccc---------------CCCCCEEECCCCCCCCChhhccCCCCCEEECCCCcc
Confidence 2 23457899999999888765432 14677788776 35677888999999998885
Q ss_pred C-CCCcccCCCCCCCEEEcCCCCCccCCccCCCCCCCCEEeCCCCcCCccChhhhcCCCchhHHHHHhhhhhhh
Q 047943 238 L-ILPPLLSGLSSLTKLVLTCCDVIEIPQDIGCLSSLELLFLCGNNFSKFTCKYQSTFTAEKTLLELLQYATVI 310 (479)
Q Consensus 238 ~-~lp~~~~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~~i~~l~~L~~L~~~L~~n~~~ 310 (479)
. ..|..+..+++|+.|+|++|.+.++|..++.+++|+.|+|++|.++.+| ..+..+++|+.| ++++|.+.
T Consensus 267 ~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~-~~~~~l~~L~~L--~L~~N~l~ 337 (597)
T 3oja_B 267 EKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVE-RNQPQFDRLENL--YLDHNSIV 337 (597)
T ss_dssp CEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCCCCG-GGHHHHTTCSEE--ECCSSCCC
T ss_pred CCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCCccC-cccccCCCCCEE--ECCCCCCC
Confidence 4 4467788889999999999998888888888899999999999988888 788888999999 88888764
No 31
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.93 E-value=4.2e-24 Score=228.59 Aligned_cols=298 Identities=23% Similarity=0.292 Sum_probs=202.6
Q ss_pred cCCccCCCccCceEEEecCCCCCCCCC-CC-CCCCceEEECCCCCCccccc-ccCCCCCCcEEEccCCCCCCCCC--CCC
Q 047943 7 IDQSLEYLPEELRYLHWYEYPLKTLPS-NF-EPENLLELNLPYSKIETIWE-VKKEAPKLKYINLHNSQYLTGMP--DLS 81 (479)
Q Consensus 7 ~~~~~~~l~~~Lr~L~~~~~~l~~lp~-~~-~~~~L~~L~L~~s~i~~l~~-~~~~l~~L~~L~Ls~~~~l~~~p--~l~ 81 (479)
+.+.+..+|.++++|+++++.++.+|. .| .+++|++|+|++|+|+.++. .++++++|++|+|++|+ ++.+| .|.
T Consensus 43 l~~vP~~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~-l~~l~~~~f~ 121 (635)
T 4g8a_A 43 FYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFS 121 (635)
T ss_dssp CSSCCSSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CCEECGGGGT
T ss_pred cCccCCCCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCc-CCCCCHHHhc
Confidence 444455677889999999999999975 46 89999999999999998865 58899999999999986 45555 378
Q ss_pred CCCCCcEEeecCCCCCCCCC-ccccccCCccccceeeccCCCcee--cCccccCCCCCCEEeccCCC-------------
Q 047943 82 ETPNLERLNILNCTNLAYIP-SCIHNFNNLRSVIGLCLRNTAIEE--VPSSIESLTKLEKLDLSYCT------------- 145 (479)
Q Consensus 82 ~l~~L~~L~L~~c~~l~~~p-~~l~~l~~L~~L~~L~L~~~~i~~--lp~~i~~l~~L~~L~L~~c~------------- 145 (479)
++++|++|++++|.. ..+| ..++++ ++|++|++++|.+.. +|..++.+++|++|+++++.
T Consensus 122 ~L~~L~~L~Ls~N~l-~~l~~~~~~~L---~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~ 197 (635)
T 4g8a_A 122 GLSSLQKLVAVETNL-ASLENFPIGHL---KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH 197 (635)
T ss_dssp TCTTCCEEECTTSCC-CCSTTCCCTTC---TTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHH
T ss_pred CCCCCCEEECCCCcC-CCCChhhhhcC---cccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchh
Confidence 899999999999754 3444 345544 445568888888763 46677888888888877632
Q ss_pred CCC-----------------------------------------------------------------------------
Q 047943 146 RLK----------------------------------------------------------------------------- 148 (479)
Q Consensus 146 ~L~----------------------------------------------------------------------------- 148 (479)
+++
T Consensus 198 ~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~ 277 (635)
T 4g8a_A 198 QMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEG 277 (635)
T ss_dssp TCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGG
T ss_pred hhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCccccccccccccccccccccccccccccc
Confidence 000
Q ss_pred ---------------------------------------------------CCCEEecCCCCCCCc--------------
Q 047943 149 ---------------------------------------------------GLCKLDLGYCSKFEC-------------- 163 (479)
Q Consensus 149 ---------------------------------------------------~L~~L~L~~c~~l~~-------------- 163 (479)
+++.|++.+|.....
T Consensus 278 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~ 357 (635)
T 4g8a_A 278 LCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFT 357 (635)
T ss_dssp GGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEE
T ss_pred ccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccc
Confidence 012222222211000
Q ss_pred -----cchhhhccccCCeeeccCccccc---cCcccccccCCCC----------CCC-----------------------
Q 047943 164 -----FPEIIEKMERLRSVDLQSTEVEE---LPSSMENLEGLKD----------LPD----------------------- 202 (479)
Q Consensus 164 -----~p~~~~~l~~L~~L~L~~~~i~~---lp~~i~~l~~L~~----------lp~----------------------- 202 (479)
.+.....+++|+.|++++|.+.. .+.....+.+|+. ++.
T Consensus 358 ~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~ 437 (635)
T 4g8a_A 358 SNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSE 437 (635)
T ss_dssp SCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTS
T ss_pred cccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccc
Confidence 00011235567777777776643 2333333333332 122
Q ss_pred --CCCCCCCCCeeecCC--C-----ccccccCCCceeecCCCC--CCCCCcccCCCCCCCEEEcCCCCCcc-CCccCCCC
Q 047943 203 --SLPNLKSLQFLNVER--L-----FSIADLDKLEDLSISGRR--GLILPPLLSGLSSLTKLVLTCCDVIE-IPQDIGCL 270 (479)
Q Consensus 203 --~l~~l~~L~~L~l~~--l-----~~l~~l~~L~~L~l~~~~--~~~lp~~~~~l~~L~~L~L~~~~l~~-lp~~l~~l 270 (479)
.+..+.+++.++++. + ..+..+++|+.|++++|. ....|..+..+++|++|+|++|++.+ .|..++.+
T Consensus 438 ~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l 517 (635)
T 4g8a_A 438 FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL 517 (635)
T ss_dssp SCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred ccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCC
Confidence 234455555555554 1 334567788888888886 23467778888999999999999888 57788899
Q ss_pred CCCCEEeCCCCcCCccChhhhcCCCchhHHHHHhhhhhhhh
Q 047943 271 SSLELLFLCGNNFSKFTCKYQSTFTAEKTLLELLQYATVIT 311 (479)
Q Consensus 271 ~~L~~L~Ls~n~l~~lp~~~i~~l~~L~~L~~~L~~n~~~~ 311 (479)
++|++|+|++|+++.++...+..+++|+.| ++++|++.+
T Consensus 518 ~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L--~Ls~N~l~~ 556 (635)
T 4g8a_A 518 SSLQVLNMSHNNFFSLDTFPYKCLNSLQVL--DYSLNHIMT 556 (635)
T ss_dssp TTCCEEECTTSCCCBCCCGGGTTCTTCCEE--ECTTSCCCB
T ss_pred CCCCEEECCCCcCCCCChhHHhCCCCCCEE--ECCCCcCCC
Confidence 999999999999988875678889999999 888888754
No 32
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.92 E-value=1.3e-24 Score=240.95 Aligned_cols=90 Identities=21% Similarity=0.150 Sum_probs=54.7
Q ss_pred CCccCCCccCceEEEecCCC-CCCC-CCCC-CCCCceEEECCCCCCccc-ccccCCCCCCcEEEccCCCCCCCCC-C--C
Q 047943 8 DQSLEYLPEELRYLHWYEYP-LKTL-PSNF-EPENLLELNLPYSKIETI-WEVKKEAPKLKYINLHNSQYLTGMP-D--L 80 (479)
Q Consensus 8 ~~~~~~l~~~Lr~L~~~~~~-l~~l-p~~~-~~~~L~~L~L~~s~i~~l-~~~~~~l~~L~~L~Ls~~~~l~~~p-~--l 80 (479)
|..+..++ +|++|+++++. ...+ |..| ++++|++|+|++|.+..+ |..++.+++|+.|+|++|.....+| . +
T Consensus 41 ~~~~~~l~-~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 119 (844)
T 3j0a_A 41 ASSFPFLE-QLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYF 119 (844)
T ss_dssp SSSCSSCC-SCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCC
T ss_pred hhHCcccc-cCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccc
Confidence 45556655 67777776663 3444 4445 666777777777766654 5666666677777776665444333 2 6
Q ss_pred CCCCCCcEEeecCCCCCC
Q 047943 81 SETPNLERLNILNCTNLA 98 (479)
Q Consensus 81 ~~l~~L~~L~L~~c~~l~ 98 (479)
.++++|++|++++|....
T Consensus 120 ~~L~~L~~L~Ls~N~l~~ 137 (844)
T 3j0a_A 120 RNLKALTRLDLSKNQIRS 137 (844)
T ss_dssp SSCSSCCEEEEESCCCCC
T ss_pred cccCCCCEEECCCCcccc
Confidence 666666666666655433
No 33
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.92 E-value=5.9e-24 Score=209.84 Aligned_cols=255 Identities=19% Similarity=0.264 Sum_probs=174.8
Q ss_pred CceEEEecCCCCCCCCCCCCCCCceEEECCCCCCccccc-ccCCCCCCcEEEccCCCCCCCCC-CCCCCCCCcEEeecCC
Q 047943 17 ELRYLHWYEYPLKTLPSNFEPENLLELNLPYSKIETIWE-VKKEAPKLKYINLHNSQYLTGMP-DLSETPNLERLNILNC 94 (479)
Q Consensus 17 ~Lr~L~~~~~~l~~lp~~~~~~~L~~L~L~~s~i~~l~~-~~~~l~~L~~L~Ls~~~~l~~~p-~l~~l~~L~~L~L~~c 94 (479)
++|.++++++.++.+|..+ +++|++|++++++++.++. .++.+++|+.|++++|......| .+..+++|++|++++|
T Consensus 32 ~l~~l~~~~~~l~~lp~~~-~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 110 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDL-PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 110 (330)
T ss_dssp ETTEEECTTSCCCSCCCSC-CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS
T ss_pred CCeEEEecCCCccccCccC-CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCC
Confidence 7899999999999999866 4789999999999998875 68899999999999987655546 5899999999999996
Q ss_pred CCCCCCCccccccCCccccceeeccCCCceecCc-cccCCCCCCEEeccCCCCCCCCCEEecCCCCCC--Cccchhhhcc
Q 047943 95 TNLAYIPSCIHNFNNLRSVIGLCLRNTAIEEVPS-SIESLTKLEKLDLSYCTRLKGLCKLDLGYCSKF--ECFPEIIEKM 171 (479)
Q Consensus 95 ~~l~~~p~~l~~l~~L~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~c~~L~~L~~L~L~~c~~l--~~~p~~~~~l 171 (479)
. +..+|..+. +.|+.|++++|.+..++. .++.+++|+.|+++++ ... +..+..+.++
T Consensus 111 ~-l~~l~~~~~-----~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n--------------~l~~~~~~~~~~~~l 170 (330)
T 1xku_A 111 Q-LKELPEKMP-----KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTN--------------PLKSSGIENGAFQGM 170 (330)
T ss_dssp C-CSBCCSSCC-----TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSS--------------CCCGGGBCTTGGGGC
T ss_pred c-CCccChhhc-----ccccEEECCCCcccccCHhHhcCCccccEEECCCC--------------cCCccCcChhhccCC
Confidence 5 556776554 567889999999987765 4777888888877764 221 1334555666
Q ss_pred ccCCeeeccCccccccCcccccccCCCCCCCCCCCCCCCCeeecCC--C-----ccccccCCCceeecCCCCCCCCC-cc
Q 047943 172 ERLRSVDLQSTEVEELPSSMENLEGLKDLPDSLPNLKSLQFLNVER--L-----FSIADLDKLEDLSISGRRGLILP-PL 243 (479)
Q Consensus 172 ~~L~~L~L~~~~i~~lp~~i~~l~~L~~lp~~l~~l~~L~~L~l~~--l-----~~l~~l~~L~~L~l~~~~~~~lp-~~ 243 (479)
++|++|++++|.+.++|..+. ++|++|++++ + ..+..+++|++|++++|....++ ..
T Consensus 171 ~~L~~L~l~~n~l~~l~~~~~---------------~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 235 (330)
T 1xku_A 171 KKLSYIRIADTNITTIPQGLP---------------PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGS 235 (330)
T ss_dssp TTCCEEECCSSCCCSCCSSCC---------------TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTT
T ss_pred CCcCEEECCCCccccCCcccc---------------ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhh
Confidence 666666666666665554221 3455555554 1 33455666666666666643333 24
Q ss_pred cCCCCCCCEEEcCCCCCccCCccCCCCCCCCEEeCCCCcCCccChhhhcC------CCchhHHHHHhhhhhh
Q 047943 244 LSGLSSLTKLVLTCCDVIEIPQDIGCLSSLELLFLCGNNFSKFTCKYQST------FTAEKTLLELLQYATV 309 (479)
Q Consensus 244 ~~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~~i~~------l~~L~~L~~~L~~n~~ 309 (479)
+..+++|++|++++|.+..+|..+..+++|++|++++|+++.++...+.. ...|+.| ++++|.+
T Consensus 236 ~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l--~l~~N~~ 305 (330)
T 1xku_A 236 LANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGV--SLFSNPV 305 (330)
T ss_dssp GGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEE--ECCSSSS
T ss_pred ccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccce--EeecCcc
Confidence 55666677777777666666666666666777777766666665333321 2455556 5555554
No 34
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.92 E-value=5.6e-24 Score=230.26 Aligned_cols=294 Identities=19% Similarity=0.167 Sum_probs=217.0
Q ss_pred ccCCCccCceEEEecCCCCCCCCCC-C-CCCCceEEECCCCCCccccc-ccCCCCCCcEEEccCCCCCCCCC-CCCCCCC
Q 047943 10 SLEYLPEELRYLHWYEYPLKTLPSN-F-EPENLLELNLPYSKIETIWE-VKKEAPKLKYINLHNSQYLTGMP-DLSETPN 85 (479)
Q Consensus 10 ~~~~l~~~Lr~L~~~~~~l~~lp~~-~-~~~~L~~L~L~~s~i~~l~~-~~~~l~~L~~L~Ls~~~~l~~~p-~l~~l~~ 85 (479)
.+..++ +|++|+++++.++.++.. | .+++|++|+|++|+++.++. .++.+++|+.|++++|......| .+.++++
T Consensus 44 ~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 122 (680)
T 1ziw_A 44 NFTRYS-QLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKN 122 (680)
T ss_dssp GGGGGT-TCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTT
T ss_pred HHhCCC-cCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCC
Confidence 466666 899999999999888554 5 89999999999999999986 58999999999999997544444 5899999
Q ss_pred CcEEeecCCCCCCCCCccccccCCccccceeeccCCCceecCcc-c--cCCCCCCEEeccCCC-----------------
Q 047943 86 LERLNILNCTNLAYIPSCIHNFNNLRSVIGLCLRNTAIEEVPSS-I--ESLTKLEKLDLSYCT----------------- 145 (479)
Q Consensus 86 L~~L~L~~c~~l~~~p~~l~~l~~L~~L~~L~L~~~~i~~lp~~-i--~~l~~L~~L~L~~c~----------------- 145 (479)
|++|++++|......|..+++ +++|++|++++|.+..++.. + ..+++|+.|+++++.
T Consensus 123 L~~L~Ls~n~l~~~~~~~~~~---l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 199 (680)
T 1ziw_A 123 LITLDLSHNGLSSTKLGTQVQ---LENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFG 199 (680)
T ss_dssp CCEEECCSSCCSCCCCCSSSC---CTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECE
T ss_pred CCEEECCCCcccccCchhhcc---cccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhh
Confidence 999999998766655665554 44556688888887766543 2 245778888877652
Q ss_pred --------------------CCCCCCEEecCCCCCCCccchhhhcccc--CCeeeccCccccccC-cccccccCCCC---
Q 047943 146 --------------------RLKGLCKLDLGYCSKFECFPEIIEKMER--LRSVDLQSTEVEELP-SSMENLEGLKD--- 199 (479)
Q Consensus 146 --------------------~L~~L~~L~L~~c~~l~~~p~~~~~l~~--L~~L~L~~~~i~~lp-~~i~~l~~L~~--- 199 (479)
..++|+.|++++|...+..|..+.+++. |++|++++|.+..++ ..++.+++|+.
T Consensus 200 L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 279 (680)
T 1ziw_A 200 LFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFL 279 (680)
T ss_dssp EECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred hhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeC
Confidence 1256788899988877777788888765 999999999998854 56788888776
Q ss_pred --------CCCCCCCCCCCCeeecCC-----------Cc-----cccccCCCceeecCCCCCCC-CCcccCCCCCCCEEE
Q 047943 200 --------LPDSLPNLKSLQFLNVER-----------LF-----SIADLDKLEDLSISGRRGLI-LPPLLSGLSSLTKLV 254 (479)
Q Consensus 200 --------lp~~l~~l~~L~~L~l~~-----------l~-----~l~~l~~L~~L~l~~~~~~~-lp~~~~~l~~L~~L~ 254 (479)
.|..+.++++|+.|++++ ++ .+..+++|++|++++|.... .+..+.++++|++|+
T Consensus 280 ~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 359 (680)
T 1ziw_A 280 EYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLS 359 (680)
T ss_dssp CSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEE
T ss_pred CCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEE
Confidence 466788999999999975 11 56678999999999998543 344567777777777
Q ss_pred cCCCC----------------------------Ccc-CCccCCCCCCCCEEeCCCCcCC-ccChhhhcCCCchhHHHHHh
Q 047943 255 LTCCD----------------------------VIE-IPQDIGCLSSLELLFLCGNNFS-KFTCKYQSTFTAEKTLLELL 304 (479)
Q Consensus 255 L~~~~----------------------------l~~-lp~~l~~l~~L~~L~Ls~n~l~-~lp~~~i~~l~~L~~L~~~L 304 (479)
+++|. +.+ .|..+..+++|+.|++++|.++ .+|...+..+++|++| ++
T Consensus 360 Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L--~L 437 (680)
T 1ziw_A 360 LSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEI--YL 437 (680)
T ss_dssp CTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEE--EC
T ss_pred CCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEE--ec
Confidence 77664 333 2444555666666666666654 3443455566666666 66
Q ss_pred hhhhh
Q 047943 305 QYATV 309 (479)
Q Consensus 305 ~~n~~ 309 (479)
++|.+
T Consensus 438 s~n~l 442 (680)
T 1ziw_A 438 SYNKY 442 (680)
T ss_dssp CSCSE
T ss_pred CCCCc
Confidence 66654
No 35
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.92 E-value=2.9e-24 Score=212.29 Aligned_cols=254 Identities=19% Similarity=0.265 Sum_probs=165.9
Q ss_pred CceEEEecCCCCCCCCCCCCCCCceEEECCCCCCcccc-cccCCCCCCcEEEccCCCCCCCCC-CCCCCCCCcEEeecCC
Q 047943 17 ELRYLHWYEYPLKTLPSNFEPENLLELNLPYSKIETIW-EVKKEAPKLKYINLHNSQYLTGMP-DLSETPNLERLNILNC 94 (479)
Q Consensus 17 ~Lr~L~~~~~~l~~lp~~~~~~~L~~L~L~~s~i~~l~-~~~~~l~~L~~L~Ls~~~~l~~~p-~l~~l~~L~~L~L~~c 94 (479)
+++.++++++.++.+|..+ +++|++|++++|+++.++ ..+..+++|+.|++++|......| .+.++++|++|++++|
T Consensus 34 ~l~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 112 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEI-SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN 112 (332)
T ss_dssp ETTEEECCSSCCSSCCSCC-CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS
T ss_pred cCCEEECCCCCccccCCCC-CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC
Confidence 6899999999999999876 478999999999999875 578999999999999987554445 5899999999999996
Q ss_pred CCCCCCCccccccCCccccceeeccCCCceecCcc-ccCCCCCCEEeccCCCCCCCCCEEecCCCCCC--Cccchhhhcc
Q 047943 95 TNLAYIPSCIHNFNNLRSVIGLCLRNTAIEEVPSS-IESLTKLEKLDLSYCTRLKGLCKLDLGYCSKF--ECFPEIIEKM 171 (479)
Q Consensus 95 ~~l~~~p~~l~~l~~L~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~c~~L~~L~~L~L~~c~~l--~~~p~~~~~l 171 (479)
. +..+|..+. +.|++|++++|.+..++.. ++.+++|+.|+++++. .. +..|..+..+
T Consensus 113 ~-l~~l~~~~~-----~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~--------------l~~~~~~~~~~~~l 172 (332)
T 2ft3_A 113 H-LVEIPPNLP-----SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNP--------------LENSGFEPGAFDGL 172 (332)
T ss_dssp C-CCSCCSSCC-----TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCC--------------CBGGGSCTTSSCSC
T ss_pred c-CCccCcccc-----ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCc--------------cccCCCCcccccCC
Confidence 5 456776654 5678899999999988754 7778888888887642 11 1223333344
Q ss_pred ccCCeeeccCccccccCcccccccCCCCCCCCCCCCCCCCeeecCC-------CccccccCCCceeecCCCCCCCCCc-c
Q 047943 172 ERLRSVDLQSTEVEELPSSMENLEGLKDLPDSLPNLKSLQFLNVER-------LFSIADLDKLEDLSISGRRGLILPP-L 243 (479)
Q Consensus 172 ~~L~~L~L~~~~i~~lp~~i~~l~~L~~lp~~l~~l~~L~~L~l~~-------l~~l~~l~~L~~L~l~~~~~~~lp~-~ 243 (479)
+|++|++++|.+.++|..+. ++|++|++++ ...+..+++|++|++++|....++. .
T Consensus 173 -~L~~L~l~~n~l~~l~~~~~---------------~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~ 236 (332)
T 2ft3_A 173 -KLNYLRISEAKLTGIPKDLP---------------ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGS 236 (332)
T ss_dssp -CCSCCBCCSSBCSSCCSSSC---------------SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTG
T ss_pred -ccCEEECcCCCCCccCcccc---------------CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhH
Confidence 55555555555555443221 2334444433 0234445555556665565433332 4
Q ss_pred cCCCCCCCEEEcCCCCCccCCccCCCCCCCCEEeCCCCcCCccChhhhcC------CCchhHHHHHhhhhhh
Q 047943 244 LSGLSSLTKLVLTCCDVIEIPQDIGCLSSLELLFLCGNNFSKFTCKYQST------FTAEKTLLELLQYATV 309 (479)
Q Consensus 244 ~~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~~i~~------l~~L~~L~~~L~~n~~ 309 (479)
+..+++|+.|++++|.+.++|..+..+++|+.|++++|.++.++...+.. ...|+.| ++++|.+
T Consensus 237 ~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L--~l~~N~~ 306 (332)
T 2ft3_A 237 LSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGI--SLFNNPV 306 (332)
T ss_dssp GGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEE--ECCSSSS
T ss_pred hhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccce--EeecCcc
Confidence 55566666666666666666666666666666666666666555333322 2345555 5555544
No 36
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.92 E-value=2.6e-24 Score=238.50 Aligned_cols=294 Identities=19% Similarity=0.155 Sum_probs=222.0
Q ss_pred CccCceEEEecCCCCCCC-CCCC-CCCCceEEECCCCC-Cccc-ccccCCCCCCcEEEccCCCCCCCCC-CCCCCCCCcE
Q 047943 14 LPEELRYLHWYEYPLKTL-PSNF-EPENLLELNLPYSK-IETI-WEVKKEAPKLKYINLHNSQYLTGMP-DLSETPNLER 88 (479)
Q Consensus 14 l~~~Lr~L~~~~~~l~~l-p~~~-~~~~L~~L~L~~s~-i~~l-~~~~~~l~~L~~L~Ls~~~~l~~~p-~l~~l~~L~~ 88 (479)
+|.+++.|+++++.++.+ |..| .+++|++|+|++|. +..+ +..++++++|++|+|++|......| .|.++++|++
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 101 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFE 101 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCC
T ss_pred CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCE
Confidence 778999999999999887 4566 99999999999994 4466 6789999999999999998766666 5999999999
Q ss_pred EeecCCCCCCCCCccccccCCccccceeeccCCCceecC--ccccCCCCCCEEeccCCC----------CC--CCCCEEe
Q 047943 89 LNILNCTNLAYIPSCIHNFNNLRSVIGLCLRNTAIEEVP--SSIESLTKLEKLDLSYCT----------RL--KGLCKLD 154 (479)
Q Consensus 89 L~L~~c~~l~~~p~~l~~l~~L~~L~~L~L~~~~i~~lp--~~i~~l~~L~~L~L~~c~----------~L--~~L~~L~ 154 (479)
|+|++|......|.. ..+.++++|++|++++|.+..++ ..++.+++|+.|+++++. .+ ++|+.|+
T Consensus 102 L~Ls~n~l~~~~~~~-~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~ 180 (844)
T 3j0a_A 102 LRLYFCGLSDAVLKD-GYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFS 180 (844)
T ss_dssp EECTTCCCSSCCSTT-CCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCE
T ss_pred eeCcCCCCCcccccC-ccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEE
Confidence 999998766555543 12345566777999999998653 579999999999999863 12 6889999
Q ss_pred cCCCCCCCccchhhhcccc------CCeeeccCccccc-cCccccccc---CCCC--------------------CCCCC
Q 047943 155 LGYCSKFECFPEIIEKMER------LRSVDLQSTEVEE-LPSSMENLE---GLKD--------------------LPDSL 204 (479)
Q Consensus 155 L~~c~~l~~~p~~~~~l~~------L~~L~L~~~~i~~-lp~~i~~l~---~L~~--------------------lp~~l 204 (479)
+++|......|..++.+.+ |+.|++++|.+.. ++..+...- ++.. -+..+
T Consensus 181 L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f 260 (844)
T 3j0a_A 181 LAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTF 260 (844)
T ss_dssp ECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTT
T ss_pred CCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhh
Confidence 9999888777766666555 9999999997764 443333211 0000 01122
Q ss_pred CC--CCCCCeeecCCC-------ccccccCCCceeecCCCCCC-CCCcccCCCCCCCEEEcCCCCCcc-CCccCCCCCCC
Q 047943 205 PN--LKSLQFLNVERL-------FSIADLDKLEDLSISGRRGL-ILPPLLSGLSSLTKLVLTCCDVIE-IPQDIGCLSSL 273 (479)
Q Consensus 205 ~~--l~~L~~L~l~~l-------~~l~~l~~L~~L~l~~~~~~-~lp~~~~~l~~L~~L~L~~~~l~~-lp~~l~~l~~L 273 (479)
.. ..+|+.|++++. ..+..+++|+.|++++|... ..|..+.++++|++|++++|.+.+ .|..+..+++|
T Consensus 261 ~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 340 (844)
T 3j0a_A 261 AGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKV 340 (844)
T ss_dssp TTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTC
T ss_pred hccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCC
Confidence 22 267888888761 44667888888888888754 345567788888888888888877 47778888888
Q ss_pred CEEeCCCCcCCccChhhhcCCCchhHHHHHhhhhhhh
Q 047943 274 ELLFLCGNNFSKFTCKYQSTFTAEKTLLELLQYATVI 310 (479)
Q Consensus 274 ~~L~Ls~n~l~~lp~~~i~~l~~L~~L~~~L~~n~~~ 310 (479)
+.|++++|.++.++...+..+++|+.| ++++|.+.
T Consensus 341 ~~L~L~~N~i~~~~~~~~~~l~~L~~L--~Ls~N~l~ 375 (844)
T 3j0a_A 341 AYIDLQKNHIAIIQDQTFKFLEKLQTL--DLRDNALT 375 (844)
T ss_dssp CEEECCSCCCCCCCSSCSCSCCCCCEE--EEETCCSC
T ss_pred CEEECCCCCCCccChhhhcCCCCCCEE--ECCCCCCC
Confidence 888888888887774567788888888 88888765
No 37
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.92 E-value=6.8e-24 Score=218.79 Aligned_cols=168 Identities=17% Similarity=0.190 Sum_probs=136.7
Q ss_pred CCCccCceEEEecCCCCCCCCCCCCCCCceEEECCCCCCcccccccCCCCCCcEEEccCCCCCCCCCCCCCCCCCcEEee
Q 047943 12 EYLPEELRYLHWYEYPLKTLPSNFEPENLLELNLPYSKIETIWEVKKEAPKLKYINLHNSQYLTGMPDLSETPNLERLNI 91 (479)
Q Consensus 12 ~~l~~~Lr~L~~~~~~l~~lp~~~~~~~L~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L 91 (479)
..++ +|++|+++++.++.+|....+++|++|++++|+++.++ ++.+++|+.|++++|. ++.++ ++++++|++|++
T Consensus 39 ~~l~-~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~-l~~~~-~~~l~~L~~L~L 113 (457)
T 3bz5_A 39 EQLA-TLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNK-LTNLD-VTPLTKLTYLNC 113 (457)
T ss_dssp HHHT-TCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSC-CSCCC-CTTCTTCCEEEC
T ss_pred hHcC-CCCEEEccCCCcccChhhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCC-Cceee-cCCCCcCCEEEC
Confidence 3455 89999999999999985448999999999999999985 8899999999999986 44454 889999999999
Q ss_pred cCCCCCCCCCccccccCCccccceeeccCCCceecCccccCCCCCCEEeccCCC--------CCCCCCEEecCCCCCCCc
Q 047943 92 LNCTNLAYIPSCIHNFNNLRSVIGLCLRNTAIEEVPSSIESLTKLEKLDLSYCT--------RLKGLCKLDLGYCSKFEC 163 (479)
Q Consensus 92 ~~c~~l~~~p~~l~~l~~L~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~--------~L~~L~~L~L~~c~~l~~ 163 (479)
++|.. ..+| +.++++|++|++++|.+..++ ++.+++|+.|++++|. .+++|+.|++++|...+
T Consensus 114 ~~N~l-~~l~-----~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~- 184 (457)
T 3bz5_A 114 DTNKL-TKLD-----VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITE- 184 (457)
T ss_dssp CSSCC-SCCC-----CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCC-
T ss_pred CCCcC-Ceec-----CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccce-
Confidence 99754 3443 556677788999999998875 8899999999999874 56788999999976444
Q ss_pred cchhhhccccCCeeeccCccccccCcccccccCC
Q 047943 164 FPEIIEKMERLRSVDLQSTEVEELPSSMENLEGL 197 (479)
Q Consensus 164 ~p~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L 197 (479)
+| ++.+++|++|++++|.+++++ ++.+++|
T Consensus 185 l~--l~~l~~L~~L~l~~N~l~~~~--l~~l~~L 214 (457)
T 3bz5_A 185 LD--VSQNKLLNRLNCDTNNITKLD--LNQNIQL 214 (457)
T ss_dssp CC--CTTCTTCCEEECCSSCCSCCC--CTTCTTC
T ss_pred ec--cccCCCCCEEECcCCcCCeec--cccCCCC
Confidence 55 778889999999999888763 4444443
No 38
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.92 E-value=2.4e-23 Score=214.56 Aligned_cols=267 Identities=24% Similarity=0.328 Sum_probs=189.4
Q ss_pred CccCceEEEecCCCCCCCCCCCCCCCceEEECCCCCCcccccccCCCCCCcEEEccCCCCCCCCCCCCCCCCCcEEeecC
Q 047943 14 LPEELRYLHWYEYPLKTLPSNFEPENLLELNLPYSKIETIWEVKKEAPKLKYINLHNSQYLTGMPDLSETPNLERLNILN 93 (479)
Q Consensus 14 l~~~Lr~L~~~~~~l~~lp~~~~~~~L~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~ 93 (479)
+|.+|+.|+++++.++.+|.. +++|++|++++|+++.++.. .++|++|++++|.. +.+|+++++++|++|++++
T Consensus 89 ~~~~L~~L~l~~n~l~~lp~~--~~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n~l-~~lp~~~~l~~L~~L~l~~ 162 (454)
T 1jl5_A 89 LPPHLESLVASCNSLTELPEL--PQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQL-EKLPELQNSSFLKIIDVDN 162 (454)
T ss_dssp CCTTCSEEECCSSCCSSCCCC--CTTCCEEECCSSCCSCCCSC---CTTCCEEECCSSCC-SSCCCCTTCTTCCEEECCS
T ss_pred CcCCCCEEEccCCcCCccccc--cCCCcEEECCCCccCcccCC---CCCCCEEECcCCCC-CCCcccCCCCCCCEEECCC
Confidence 455788888888888777754 37788888888887766532 27899999999864 4588899999999999999
Q ss_pred CCCCCCCCccccccCCccccceeeccCCCceecCccccCCCCCCEEeccCCC------CCCCCCEEecCCCCCCCccchh
Q 047943 94 CTNLAYIPSCIHNFNNLRSVIGLCLRNTAIEEVPSSIESLTKLEKLDLSYCT------RLKGLCKLDLGYCSKFECFPEI 167 (479)
Q Consensus 94 c~~l~~~p~~l~~l~~L~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~------~L~~L~~L~L~~c~~l~~~p~~ 167 (479)
|. +..+|..+ ..|++|++++|.+..+| .++.+++|+.|++++|. ..++|++|++++|... .+|.
T Consensus 163 N~-l~~lp~~~------~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~n~l~-~lp~- 232 (454)
T 1jl5_A 163 NS-LKKLPDLP------PSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILE-ELPE- 232 (454)
T ss_dssp SC-CSCCCCCC------TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCS-SCCC-
T ss_pred Cc-CcccCCCc------ccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCcCCCCcCcccEEECcCCcCC-cccc-
Confidence 75 44566543 36788999999999888 68999999999999874 2347899999998554 7775
Q ss_pred hhccccCCeeeccCccccccCcccccccCCC-------CCCCCCCCCCCCCeeecCC--Ccccccc-CCCceeecCCCCC
Q 047943 168 IEKMERLRSVDLQSTEVEELPSSMENLEGLK-------DLPDSLPNLKSLQFLNVER--LFSIADL-DKLEDLSISGRRG 237 (479)
Q Consensus 168 ~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~-------~lp~~l~~l~~L~~L~l~~--l~~l~~l-~~L~~L~l~~~~~ 237 (479)
++.+++|++|++++|.+.++|....+++.|. .+|.. .++|+.|++++ +..+... ++|+.|++++|..
T Consensus 233 ~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~N~l~~l~~~---~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l 309 (454)
T 1jl5_A 233 LQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPEL---PQSLTFLDVSENIFSGLSELPPNLYYLNASSNEI 309 (454)
T ss_dssp CTTCTTCCEEECCSSCCSSCCSCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSEESCCCTTCCEEECCSSCC
T ss_pred cCCCCCCCEEECCCCcCCcccccccccCEEECCCCcccccCcc---cCcCCEEECcCCccCcccCcCCcCCEEECcCCcC
Confidence 7889999999999999998876544433221 13332 36778888876 3333222 5677777777665
Q ss_pred CCCCcccCCCCCCCEEEcCCCCCccCCccCCCCCCCCEEeCCCCcCCccChhhhcCCCchhHHHHHhhhhhhhh
Q 047943 238 LILPPLLSGLSSLTKLVLTCCDVIEIPQDIGCLSSLELLFLCGNNFSKFTCKYQSTFTAEKTLLELLQYATVIT 311 (479)
Q Consensus 238 ~~lp~~~~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~~i~~l~~L~~L~~~L~~n~~~~ 311 (479)
..++.. .++|++|++++|.+.++|.. +++|+.|++++|.++.+| . .+++|++| ++++|.+.+
T Consensus 310 ~~i~~~---~~~L~~L~Ls~N~l~~lp~~---~~~L~~L~L~~N~l~~lp-~---~l~~L~~L--~L~~N~l~~ 371 (454)
T 1jl5_A 310 RSLCDL---PPSLEELNVSNNKLIELPAL---PPRLERLIASFNHLAEVP-E---LPQNLKQL--HVEYNPLRE 371 (454)
T ss_dssp SEECCC---CTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSCCC-C---CCTTCCEE--ECCSSCCSS
T ss_pred CcccCC---cCcCCEEECCCCcccccccc---CCcCCEEECCCCcccccc-c---hhhhccEE--ECCCCCCCc
Confidence 444331 24677777777776666653 466777777777777666 3 35666777 777776654
No 39
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=2e-24 Score=230.35 Aligned_cols=271 Identities=18% Similarity=0.220 Sum_probs=223.5
Q ss_pred CCCccCceEEEecCCCCCCCCC-CC-CCCCceEEECCCCCCccccc-ccCCCCCCcEEEccCCCCCCCCC-C-CCCCCCC
Q 047943 12 EYLPEELRYLHWYEYPLKTLPS-NF-EPENLLELNLPYSKIETIWE-VKKEAPKLKYINLHNSQYLTGMP-D-LSETPNL 86 (479)
Q Consensus 12 ~~l~~~Lr~L~~~~~~l~~lp~-~~-~~~~L~~L~L~~s~i~~l~~-~~~~l~~L~~L~Ls~~~~l~~~p-~-l~~l~~L 86 (479)
..++ +|++|++.++.++.+|. .| .+++|++|+|++|.+..++. .++.+++|+.|+|++|... .+| . |+++++|
T Consensus 72 ~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L 149 (597)
T 3oja_B 72 DSFR-QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKL 149 (597)
T ss_dssp HHCC-CCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTC
T ss_pred ccCC-CCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCC-CCCHHHhccCCCC
Confidence 4455 89999999999998876 55 89999999999999998764 4689999999999999644 555 4 6899999
Q ss_pred cEEeecCCCCCCCCCccccccCCccccceeeccCCCceecCccccCCCCCCEEeccCCC-----CCCCCCEEecCCCCCC
Q 047943 87 ERLNILNCTNLAYIPSCIHNFNNLRSVIGLCLRNTAIEEVPSSIESLTKLEKLDLSYCT-----RLKGLCKLDLGYCSKF 161 (479)
Q Consensus 87 ~~L~L~~c~~l~~~p~~l~~l~~L~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~-----~L~~L~~L~L~~c~~l 161 (479)
++|++++|......|..++++. +|+.|++++|.+..++ ++.+++|+.|+++++. ...+|+.|++++|...
T Consensus 150 ~~L~Ls~N~l~~~~~~~~~~l~---~L~~L~L~~N~l~~~~--~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~ 224 (597)
T 3oja_B 150 TTLSMSNNNLERIEDDTFQATT---SLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSIN 224 (597)
T ss_dssp CEEECCSSCCCBCCTTTTTTCT---TCCEEECTTSCCSBCC--GGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCC
T ss_pred CEEEeeCCcCCCCChhhhhcCC---cCcEEECcCCCCCCcC--hhhhhhhhhhhcccCccccccCCchhheeeccCCccc
Confidence 9999999876655565666555 5666999999998875 6778999999999863 4567999999997654
Q ss_pred CccchhhhccccCCeeeccCccccccCcccccccCCCCCCCCCCCCCCCCeeecCC-------CccccccCCCceeecCC
Q 047943 162 ECFPEIIEKMERLRSVDLQSTEVEELPSSMENLEGLKDLPDSLPNLKSLQFLNVER-------LFSIADLDKLEDLSISG 234 (479)
Q Consensus 162 ~~~p~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~lp~~l~~l~~L~~L~l~~-------l~~l~~l~~L~~L~l~~ 234 (479)
.++... .++|+.|++++|.+.+.+ .+..+++|+.|++++ ...++.+++|+.|++++
T Consensus 225 -~~~~~~--~~~L~~L~L~~n~l~~~~--------------~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 287 (597)
T 3oja_B 225 -VVRGPV--NVELTILKLQHNNLTDTA--------------WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISN 287 (597)
T ss_dssp -EEECSC--CSCCCEEECCSSCCCCCG--------------GGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTT
T ss_pred -cccccc--CCCCCEEECCCCCCCCCh--------------hhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCC
Confidence 333322 358999999999888742 244567788888887 24677899999999999
Q ss_pred CCCCCCCcccCCCCCCCEEEcCCCCCccCCccCCCCCCCCEEeCCCCcCCccChhhhcCCCchhHHHHHhhhhhhhh
Q 047943 235 RRGLILPPLLSGLSSLTKLVLTCCDVIEIPQDIGCLSSLELLFLCGNNFSKFTCKYQSTFTAEKTLLELLQYATVIT 311 (479)
Q Consensus 235 ~~~~~lp~~~~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~~i~~l~~L~~L~~~L~~n~~~~ 311 (479)
|....+|..+..+++|+.|+|++|.+.++|..++.+++|+.|+|++|.++.+| +..+++|+.| ++++|.+..
T Consensus 288 N~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L--~l~~N~~~~ 359 (597)
T 3oja_B 288 NRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNL--TLSHNDWDC 359 (597)
T ss_dssp SCCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEE--ECCSSCEEH
T ss_pred CCCCCCCcccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCCCCCcC---hhhcCCCCEE--EeeCCCCCC
Confidence 99888888888899999999999999999998999999999999999999887 6678899999 898887643
No 40
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.92 E-value=2.2e-24 Score=212.88 Aligned_cols=215 Identities=22% Similarity=0.383 Sum_probs=130.4
Q ss_pred cCceEEEecCCCCCCCCCCC-CCCCceEEECCCCCCcccccccCCCCCCcEEEccCCCCCCCCC-CCCCCCCCcEEeecC
Q 047943 16 EELRYLHWYEYPLKTLPSNF-EPENLLELNLPYSKIETIWEVKKEAPKLKYINLHNSQYLTGMP-DLSETPNLERLNILN 93 (479)
Q Consensus 16 ~~Lr~L~~~~~~l~~lp~~~-~~~~L~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p-~l~~l~~L~~L~L~~ 93 (479)
..++.|+++++.++.+|..+ .+++|++|+|++|.++.+|..++.+++|+.|++++|... .+| .+.++++|++|++++
T Consensus 81 ~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~ 159 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRA 159 (328)
T ss_dssp TTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEE
T ss_pred cceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCC
Confidence 36788888888888888765 788888888888888888887888888888888887644 666 577888888888888
Q ss_pred CCCCCCCCccccc------cCCccccceeeccCCCceecCccccCCCCCCEEeccCCCCCCCCCEEecCCCCCCCccchh
Q 047943 94 CTNLAYIPSCIHN------FNNLRSVIGLCLRNTAIEEVPSSIESLTKLEKLDLSYCTRLKGLCKLDLGYCSKFECFPEI 167 (479)
Q Consensus 94 c~~l~~~p~~l~~------l~~L~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~L~~L~~L~L~~c~~l~~~p~~ 167 (479)
|...+.+|..+.. +..++.|++|++++|.+..+ |..
T Consensus 160 n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l--------------------------------------p~~ 201 (328)
T 4fcg_A 160 CPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSL--------------------------------------PAS 201 (328)
T ss_dssp ETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCC--------------------------------------CGG
T ss_pred CCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcc--------------------------------------hHh
Confidence 8777777766543 22233344444444444444 444
Q ss_pred hhccccCCeeeccCccccccCcccccccCCCCCCCCCCCCCCCCeeecCCCccccccCCCceeecCCCC-CCCCCcccCC
Q 047943 168 IEKMERLRSVDLQSTEVEELPSSMENLEGLKDLPDSLPNLKSLQFLNVERLFSIADLDKLEDLSISGRR-GLILPPLLSG 246 (479)
Q Consensus 168 ~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~lp~~l~~l~~L~~L~l~~l~~l~~l~~L~~L~l~~~~-~~~lp~~~~~ 246 (479)
++++++|++|++++|.+.++|..++ .+++|++|++++|. ...+|..+..
T Consensus 202 l~~l~~L~~L~L~~N~l~~l~~~l~------------------------------~l~~L~~L~Ls~n~~~~~~p~~~~~ 251 (328)
T 4fcg_A 202 IANLQNLKSLKIRNSPLSALGPAIH------------------------------HLPKLEELDLRGCTALRNYPPIFGG 251 (328)
T ss_dssp GGGCTTCCEEEEESSCCCCCCGGGG------------------------------GCTTCCEEECTTCTTCCBCCCCTTC
T ss_pred hcCCCCCCEEEccCCCCCcCchhhc------------------------------cCCCCCEEECcCCcchhhhHHHhcC
Confidence 4555555555555555444443221 12233333444443 3344444555
Q ss_pred CCCCCEEEcCCCCCcc-CCccCCCCCCCCEEeCCCCc-CCccChhhhcCCCchhHH
Q 047943 247 LSSLTKLVLTCCDVIE-IPQDIGCLSSLELLFLCGNN-FSKFTCKYQSTFTAEKTL 300 (479)
Q Consensus 247 l~~L~~L~L~~~~l~~-lp~~l~~l~~L~~L~Ls~n~-l~~lp~~~i~~l~~L~~L 300 (479)
+++|+.|++++|++.+ +|..++.+++|+.|+|++|+ +..+| ..+..+++|+.+
T Consensus 252 l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP-~~l~~L~~L~~l 306 (328)
T 4fcg_A 252 RAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLP-SLIAQLPANCII 306 (328)
T ss_dssp CCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCC-GGGGGSCTTCEE
T ss_pred CCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhcc-HHHhhccCceEE
Confidence 5555555555555444 55555555555555555555 33555 555555555555
No 41
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.92 E-value=5.6e-23 Score=202.80 Aligned_cols=259 Identities=16% Similarity=0.174 Sum_probs=193.4
Q ss_pred CCCccCceEEEecCCCCCCCCC-CC-CCCCceEEECCCCCCccc-ccccCCCCCCcEEEccCCCCCCCCC-CCCCCCCCc
Q 047943 12 EYLPEELRYLHWYEYPLKTLPS-NF-EPENLLELNLPYSKIETI-WEVKKEAPKLKYINLHNSQYLTGMP-DLSETPNLE 87 (479)
Q Consensus 12 ~~l~~~Lr~L~~~~~~l~~lp~-~~-~~~~L~~L~L~~s~i~~l-~~~~~~l~~L~~L~Ls~~~~l~~~p-~l~~l~~L~ 87 (479)
..+++.+++|+++++.++.++. .| .+++|++|++++|+++.+ +..++.+++|+.|++++|. ++.+| .+. ++|+
T Consensus 48 ~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~l~~~~~--~~L~ 124 (330)
T 1xku_A 48 KDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ-LKELPEKMP--KTLQ 124 (330)
T ss_dssp CSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC-CSBCCSSCC--TTCC
T ss_pred ccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCc-CCccChhhc--cccc
Confidence 3345689999999999999987 45 899999999999999987 7889999999999999986 45666 333 8999
Q ss_pred EEeecCCCCCCCCCccccccCCccccceeeccCCCce---ecCccccCCCCCCEEeccCCC-------CCCCCCEEecCC
Q 047943 88 RLNILNCTNLAYIPSCIHNFNNLRSVIGLCLRNTAIE---EVPSSIESLTKLEKLDLSYCT-------RLKGLCKLDLGY 157 (479)
Q Consensus 88 ~L~L~~c~~l~~~p~~l~~l~~L~~L~~L~L~~~~i~---~lp~~i~~l~~L~~L~L~~c~-------~L~~L~~L~L~~ 157 (479)
+|++++|......+..+.+ ++.|+.|++++|.+. ..+..++.+++|+.|+++++. -.++|++|++++
T Consensus 125 ~L~l~~n~l~~~~~~~~~~---l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~ 201 (330)
T 1xku_A 125 ELRVHENEITKVRKSVFNG---LNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDG 201 (330)
T ss_dssp EEECCSSCCCBBCHHHHTT---CTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTT
T ss_pred EEECCCCcccccCHhHhcC---CccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCccccccCCEEECCC
Confidence 9999997654433344544 455667999999886 346678889999999998753 124556666666
Q ss_pred CCCCCccchhhhccccCCeeeccCccccccCcccccccCCCCCCCCCCCCCCCCeeecCCCccccccCCCceeecCCCCC
Q 047943 158 CSKFECFPEIIEKMERLRSVDLQSTEVEELPSSMENLEGLKDLPDSLPNLKSLQFLNVERLFSIADLDKLEDLSISGRRG 237 (479)
Q Consensus 158 c~~l~~~p~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~lp~~l~~l~~L~~L~l~~l~~l~~l~~L~~L~l~~~~~ 237 (479)
|......|..+..+++|++|++++|.+.+++. ..+..+++|++|++++|..
T Consensus 202 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-----------------------------~~~~~l~~L~~L~L~~N~l 252 (330)
T 1xku_A 202 NKITKVDAASLKGLNNLAKLGLSFNSISAVDN-----------------------------GSLANTPHLRELHLNNNKL 252 (330)
T ss_dssp SCCCEECTGGGTTCTTCCEEECCSSCCCEECT-----------------------------TTGGGSTTCCEEECCSSCC
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCceeCh-----------------------------hhccCCCCCCEEECCCCcC
Confidence 55444445555566666666666665555332 2355667888888888998
Q ss_pred CCCCcccCCCCCCCEEEcCCCCCccCCcc-CC------CCCCCCEEeCCCCcCC--ccChhhhcCCCchhHHHHHhhhh
Q 047943 238 LILPPLLSGLSSLTKLVLTCCDVIEIPQD-IG------CLSSLELLFLCGNNFS--KFTCKYQSTFTAEKTLLELLQYA 307 (479)
Q Consensus 238 ~~lp~~~~~l~~L~~L~L~~~~l~~lp~~-l~------~l~~L~~L~Ls~n~l~--~lp~~~i~~l~~L~~L~~~L~~n 307 (479)
..+|..+..+++|++|++++|.+++++.. +. ..+.|+.|++++|.+. .++...+..+.+|+.+ ++++|
T Consensus 253 ~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l--~L~~N 329 (330)
T 1xku_A 253 VKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAV--QLGNY 329 (330)
T ss_dssp SSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGE--EC---
T ss_pred ccCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEE--Eeccc
Confidence 89999899999999999999999986543 32 3478999999999976 3443678888889998 66655
No 42
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.91 E-value=2.6e-24 Score=210.99 Aligned_cols=237 Identities=16% Similarity=0.218 Sum_probs=174.5
Q ss_pred CCceEEECCCCCCc---ccccccCCCCCCcEEEccC-CCCCCCCC-CCCCCCCCcEEeecCCCCCCCCCccccccCCccc
Q 047943 38 ENLLELNLPYSKIE---TIWEVKKEAPKLKYINLHN-SQYLTGMP-DLSETPNLERLNILNCTNLAYIPSCIHNFNNLRS 112 (479)
Q Consensus 38 ~~L~~L~L~~s~i~---~l~~~~~~l~~L~~L~Ls~-~~~l~~~p-~l~~l~~L~~L~L~~c~~l~~~p~~l~~l~~L~~ 112 (479)
.++++|+|+++.+. .+|..++.+++|+.|++++ +.....+| .+.++++|++|++++|.....+|..+.++.+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~--- 126 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKT--- 126 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTT---
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCC---
Confidence 57888888888887 4778888888888888885 65555666 5888888888888887766677776665544
Q ss_pred cceeeccCCCce-ecCccccCCCCCCEEeccCCCCCCCCCEEecCCCCCCCccchhhhccc-cCCeeeccCccccc-cCc
Q 047943 113 VIGLCLRNTAIE-EVPSSIESLTKLEKLDLSYCTRLKGLCKLDLGYCSKFECFPEIIEKME-RLRSVDLQSTEVEE-LPS 189 (479)
Q Consensus 113 L~~L~L~~~~i~-~lp~~i~~l~~L~~L~L~~c~~L~~L~~L~L~~c~~l~~~p~~~~~l~-~L~~L~L~~~~i~~-lp~ 189 (479)
|++|++++|.+. .+|..++.+++|++|+++++ ...+.+|..++++. +|++|++++|.+.+ +|.
T Consensus 127 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N--------------~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~ 192 (313)
T 1ogq_A 127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGN--------------RISGAIPDSYGSFSKLFTSMTISRNRLTGKIPP 192 (313)
T ss_dssp CCEEECCSSEEESCCCGGGGGCTTCCEEECCSS--------------CCEEECCGGGGCCCTTCCEEECCSSEEEEECCG
T ss_pred CCEEeCCCCccCCcCChHHhcCCCCCeEECcCC--------------cccCcCCHHHhhhhhcCcEEECcCCeeeccCCh
Confidence 455888888887 67777877777777777663 33335566666665 66666666666653 444
Q ss_pred ccccccCCCCCCCCCCCCCCCCeeecCCC-------ccccccCCCceeecCCCCCCCCCcccCCCCCCCEEEcCCCCCcc
Q 047943 190 SMENLEGLKDLPDSLPNLKSLQFLNVERL-------FSIADLDKLEDLSISGRRGLILPPLLSGLSSLTKLVLTCCDVIE 262 (479)
Q Consensus 190 ~i~~l~~L~~lp~~l~~l~~L~~L~l~~l-------~~l~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~ 262 (479)
.++. ++ |+.|++++. ..+..+++|+.|++++|.....+..+..+++|++|++++|.+.+
T Consensus 193 ~~~~-------------l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~ 258 (313)
T 1ogq_A 193 TFAN-------------LN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYG 258 (313)
T ss_dssp GGGG-------------CC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEE
T ss_pred HHhC-------------Cc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccC
Confidence 3332 22 556666551 34566788888888888855444447788999999999999995
Q ss_pred -CCccCCCCCCCCEEeCCCCcCC-ccChhhhcCCCchhHHHHHhhhhhh
Q 047943 263 -IPQDIGCLSSLELLFLCGNNFS-KFTCKYQSTFTAEKTLLELLQYATV 309 (479)
Q Consensus 263 -lp~~l~~l~~L~~L~Ls~n~l~-~lp~~~i~~l~~L~~L~~~L~~n~~ 309 (479)
+|..+..+++|+.|++++|+++ .+| . ...+++|+.+ ++++|+.
T Consensus 259 ~~p~~l~~l~~L~~L~Ls~N~l~~~ip-~-~~~l~~L~~l--~l~~N~~ 303 (313)
T 1ogq_A 259 TLPQGLTQLKFLHSLNVSFNNLCGEIP-Q-GGNLQRFDVS--AYANNKC 303 (313)
T ss_dssp CCCGGGGGCTTCCEEECCSSEEEEECC-C-STTGGGSCGG--GTCSSSE
T ss_pred cCChHHhcCcCCCEEECcCCcccccCC-C-CccccccChH--HhcCCCC
Confidence 9999999999999999999988 777 4 4889999999 7777663
No 43
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.90 E-value=1.4e-22 Score=200.14 Aligned_cols=256 Identities=18% Similarity=0.223 Sum_probs=185.2
Q ss_pred CccCceEEEecCCCCCCCCC-CC-CCCCceEEECCCCCCccc-ccccCCCCCCcEEEccCCCCCCCCCC-CCCCCCCcEE
Q 047943 14 LPEELRYLHWYEYPLKTLPS-NF-EPENLLELNLPYSKIETI-WEVKKEAPKLKYINLHNSQYLTGMPD-LSETPNLERL 89 (479)
Q Consensus 14 l~~~Lr~L~~~~~~l~~lp~-~~-~~~~L~~L~L~~s~i~~l-~~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L 89 (479)
+++++++|+++++.++.++. .| .+++|++|++++|+++.+ +..++.+++|+.|++++|.. +.+|. +. ++|++|
T Consensus 52 ~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~l~~~~~--~~L~~L 128 (332)
T 2ft3_A 52 ISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHL-VEIPPNLP--SSLVEL 128 (332)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCC-CSCCSSCC--TTCCEE
T ss_pred CCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcC-CccCcccc--ccCCEE
Confidence 35689999999999998865 56 899999999999999987 78899999999999999864 46663 43 899999
Q ss_pred eecCCCCCCCCCccccccCCccccceeeccCCCcee---cCccccCCCCCCEEeccCCCCCCCCCEEecCCCCCCCccch
Q 047943 90 NILNCTNLAYIPSCIHNFNNLRSVIGLCLRNTAIEE---VPSSIESLTKLEKLDLSYCTRLKGLCKLDLGYCSKFECFPE 166 (479)
Q Consensus 90 ~L~~c~~l~~~p~~l~~l~~L~~L~~L~L~~~~i~~---lp~~i~~l~~L~~L~L~~c~~L~~L~~L~L~~c~~l~~~p~ 166 (479)
++++|......+..+.+ ++.|+.|++++|.+.. .+..++.+ +|+.|+++++. +..+|.
T Consensus 129 ~l~~n~i~~~~~~~~~~---l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~---------------l~~l~~ 189 (332)
T 2ft3_A 129 RIHDNRIRKVPKGVFSG---LRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAK---------------LTGIPK 189 (332)
T ss_dssp ECCSSCCCCCCSGGGSS---CSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSB---------------CSSCCS
T ss_pred ECCCCccCccCHhHhCC---CccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCC---------------CCccCc
Confidence 99997654333334544 4556679999999863 34556555 77777776642 222333
Q ss_pred hhhccccCCeeeccCccccccCcccccccCCCCCCCCCCCCCCCCeeecCC--C-----ccccccCCCceeecCCCCCCC
Q 047943 167 IIEKMERLRSVDLQSTEVEELPSSMENLEGLKDLPDSLPNLKSLQFLNVER--L-----FSIADLDKLEDLSISGRRGLI 239 (479)
Q Consensus 167 ~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~lp~~l~~l~~L~~L~l~~--l-----~~l~~l~~L~~L~l~~~~~~~ 239 (479)
.+. ++|++|++++|.+.+++. ..+.++++|+.|++++ + ..+..+++|++|++++|....
T Consensus 190 ~~~--~~L~~L~l~~n~i~~~~~------------~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 255 (332)
T 2ft3_A 190 DLP--ETLNELHLDHNKIQAIEL------------EDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSR 255 (332)
T ss_dssp SSC--SSCSCCBCCSSCCCCCCT------------TSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCB
T ss_pred ccc--CCCCEEECCCCcCCccCH------------HHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCee
Confidence 222 456666666666555431 2333445555555554 1 246677889999999999889
Q ss_pred CCcccCCCCCCCEEEcCCCCCccCCc-cCCC------CCCCCEEeCCCCcCC--ccChhhhcCCCchhHHHHHhhhh
Q 047943 240 LPPLLSGLSSLTKLVLTCCDVIEIPQ-DIGC------LSSLELLFLCGNNFS--KFTCKYQSTFTAEKTLLELLQYA 307 (479)
Q Consensus 240 lp~~~~~l~~L~~L~L~~~~l~~lp~-~l~~------l~~L~~L~Ls~n~l~--~lp~~~i~~l~~L~~L~~~L~~n 307 (479)
+|..+..+++|+.|++++|.+++++. .+.. .++|+.|++++|++. .++...+..+++|+.+ ++++|
T Consensus 256 lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l--~l~~n 330 (332)
T 2ft3_A 256 VPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAI--QFGNY 330 (332)
T ss_dssp CCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTE--EC---
T ss_pred cChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhh--hcccc
Confidence 99989999999999999999998553 3332 477999999999976 5553678889999999 54444
No 44
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.90 E-value=2e-22 Score=207.75 Aligned_cols=267 Identities=21% Similarity=0.218 Sum_probs=171.9
Q ss_pred ccCCCccCceEEEecCCCCCCCCCCCCCCCceEEECCCCCCcccccccCCCCCCcEEEccCCCCCCCCCCCCCCCCCcEE
Q 047943 10 SLEYLPEELRYLHWYEYPLKTLPSNFEPENLLELNLPYSKIETIWEVKKEAPKLKYINLHNSQYLTGMPDLSETPNLERL 89 (479)
Q Consensus 10 ~~~~l~~~Lr~L~~~~~~l~~lp~~~~~~~L~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L 89 (479)
++..++ +|++|+++++.++.+| ...+++|++|++++|+++.++ ++.+++|+.|++++|. ++.+| ++.+++|++|
T Consensus 59 ~l~~l~-~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~N~-l~~l~-~~~l~~L~~L 132 (457)
T 3bz5_A 59 GIEKLT-GLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNK-LTKLD-VSQNPLLTYL 132 (457)
T ss_dssp TGGGCT-TCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECCSSC-CSCCC-CTTCTTCCEE
T ss_pred hhcccC-CCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCceee--cCCCCcCCEEECCCCc-CCeec-CCCCCcCCEE
Confidence 566666 8999999999999886 338899999999999999875 7889999999999985 44454 8888999999
Q ss_pred eecCCCCCCCCCccccccCCccccceeeccCC-CceecCccccCCCCCCEEeccCCC-------CCCCCCEEecCCCCCC
Q 047943 90 NILNCTNLAYIPSCIHNFNNLRSVIGLCLRNT-AIEEVPSSIESLTKLEKLDLSYCT-------RLKGLCKLDLGYCSKF 161 (479)
Q Consensus 90 ~L~~c~~l~~~p~~l~~l~~L~~L~~L~L~~~-~i~~lp~~i~~l~~L~~L~L~~c~-------~L~~L~~L~L~~c~~l 161 (479)
++++|.... ++ +.+++.|++|++++| .+..+ .++.+++|+.|+++++. .+++|+.|++++|...
T Consensus 133 ~l~~N~l~~-l~-----l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l~l~~l~~L~~L~l~~N~l~ 204 (457)
T 3bz5_A 133 NCARNTLTE-ID-----VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITELDVSQNKLLNRLNCDTNNIT 204 (457)
T ss_dssp ECTTSCCSC-CC-----CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCCCCTTCTTCCEEECCSSCCS
T ss_pred ECCCCccce-ec-----cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccceeccccCCCCCEEECcCCcCC
Confidence 999875433 32 444555666777777 34444 36677777777777652 5566777777776544
Q ss_pred CccchhhhccccCCeeeccCccccccCcccccccCCCCCC--------CCCCCCCCCCeeecCCCccccccCCCceeecC
Q 047943 162 ECFPEIIEKMERLRSVDLQSTEVEELPSSMENLEGLKDLP--------DSLPNLKSLQFLNVERLFSIADLDKLEDLSIS 233 (479)
Q Consensus 162 ~~~p~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~lp--------~~l~~l~~L~~L~l~~l~~l~~l~~L~~L~l~ 233 (479)
. + .++.+++|++|++++|.++++| ++.+++|+.+. ..+..+++|+.|++++ .+|+.|+++
T Consensus 205 ~-~--~l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~-------n~L~~L~l~ 272 (457)
T 3bz5_A 205 K-L--DLNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQ-------TDLLEIDLT 272 (457)
T ss_dssp C-C--CCTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTT-------CCCSCCCCT
T ss_pred e-e--ccccCCCCCEEECcCCcccccC--ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccC-------CCCCEEECC
Confidence 3 2 2566777777777777777765 44444333210 0022333333333332 234445555
Q ss_pred CCC-CCCCCcccCCCCCCCEEEcCCCCCcc-CCc--------cCCCCCCCCEEeCCCCcCCccChhhhcCCCchhHHHHH
Q 047943 234 GRR-GLILPPLLSGLSSLTKLVLTCCDVIE-IPQ--------DIGCLSSLELLFLCGNNFSKFTCKYQSTFTAEKTLLEL 303 (479)
Q Consensus 234 ~~~-~~~lp~~~~~l~~L~~L~L~~~~l~~-lp~--------~l~~l~~L~~L~Ls~n~l~~lp~~~i~~l~~L~~L~~~ 303 (479)
+|. ...+| ...+++|+.|++++|...+ +|. .+..+++|+.|++++|+++.++ ++.+++|+.| +
T Consensus 273 ~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l~---l~~l~~L~~L--~ 345 (457)
T 3bz5_A 273 HNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTELD---VSHNTKLKSL--S 345 (457)
T ss_dssp TCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCCC---CTTCTTCSEE--E
T ss_pred CCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCcccccc---cccCCcCcEE--E
Confidence 544 22233 3455667777776665433 332 1345566777777777776654 5666777777 6
Q ss_pred hhhhhh
Q 047943 304 LQYATV 309 (479)
Q Consensus 304 L~~n~~ 309 (479)
+++|++
T Consensus 346 l~~N~l 351 (457)
T 3bz5_A 346 CVNAHI 351 (457)
T ss_dssp CCSSCC
T ss_pred CCCCCC
Confidence 666644
No 45
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.90 E-value=2.9e-22 Score=213.26 Aligned_cols=251 Identities=22% Similarity=0.270 Sum_probs=198.9
Q ss_pred CccCceEEEecCCCCCCCCCCCCCCCceEEECCCCCCcccccccCCCCCCcEEEccCCCCCCCCCCCCCCCCCcEEeecC
Q 047943 14 LPEELRYLHWYEYPLKTLPSNFEPENLLELNLPYSKIETIWEVKKEAPKLKYINLHNSQYLTGMPDLSETPNLERLNILN 93 (479)
Q Consensus 14 l~~~Lr~L~~~~~~l~~lp~~~~~~~L~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~ 93 (479)
.+..++.|+++++.++.+|..+. ++|++|++++|+++.+|. .+++|+.|+|++|. ++.+|. .+++|++|++++
T Consensus 38 ~~~~l~~L~ls~n~L~~lp~~l~-~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~-l~~lp~--~l~~L~~L~Ls~ 110 (622)
T 3g06_A 38 LNNGNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQ-LTSLPV--LPPGLLELSIFS 110 (622)
T ss_dssp HHHCCCEEECCSSCCSCCCSCCC-TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCC-CSCCCC--CCTTCCEEEECS
T ss_pred cCCCCcEEEecCCCcCccChhhC-CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCc-CCcCCC--CCCCCCEEECcC
Confidence 34468999999999999998765 899999999999999887 68999999999986 567776 789999999999
Q ss_pred CCCCCCCCccccccCCccccceeeccCCCceecCccccCCCCCCEEeccCCC------CCCCCCEEecCCCCCCCccchh
Q 047943 94 CTNLAYIPSCIHNFNNLRSVIGLCLRNTAIEEVPSSIESLTKLEKLDLSYCT------RLKGLCKLDLGYCSKFECFPEI 167 (479)
Q Consensus 94 c~~l~~~p~~l~~l~~L~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~------~L~~L~~L~L~~c~~l~~~p~~ 167 (479)
|. +..+|. .+.+|+.|++++|.+..+|.. +++|++|++++|. .+.+|+.|++++|.. ..+|
T Consensus 111 N~-l~~l~~------~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l-~~l~-- 177 (622)
T 3g06_A 111 NP-LTHLPA------LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPALPSELCKLWAYNNQL-TSLP-- 177 (622)
T ss_dssp CC-CCCCCC------CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCC-SCCC--
T ss_pred Cc-CCCCCC------CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCcCCCcCCccCCCCEEECCCCCC-CCCc--
Confidence 64 455555 345677799999999998874 4889999998873 345788899988654 4466
Q ss_pred hhccccCCeeeccCccccccCcccccccCCCCCCCCCCCCCCCCeeecCC--Ccccc-ccCCCceeecCCCCCCCCCccc
Q 047943 168 IEKMERLRSVDLQSTEVEELPSSMENLEGLKDLPDSLPNLKSLQFLNVER--LFSIA-DLDKLEDLSISGRRGLILPPLL 244 (479)
Q Consensus 168 ~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~lp~~l~~l~~L~~L~l~~--l~~l~-~l~~L~~L~l~~~~~~~lp~~~ 244 (479)
..+++|+.|++++|.+.++|.. .++|+.|++++ +..+. .+++|+.|++++|....+|
T Consensus 178 -~~~~~L~~L~Ls~N~l~~l~~~----------------~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~L~~lp--- 237 (622)
T 3g06_A 178 -MLPSGLQELSVSDNQLASLPTL----------------PSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLP--- 237 (622)
T ss_dssp -CCCTTCCEEECCSSCCSCCCCC----------------CTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSCCC---
T ss_pred -ccCCCCcEEECCCCCCCCCCCc----------------cchhhEEECcCCcccccCCCCCCCCEEEccCCccCcCC---
Confidence 4567899999999988877653 24566676666 22222 2478899999988877777
Q ss_pred CCCCCCCEEEcCCCCCccCCccCCCCCCCCEEeCCCCcCCccChhhhcCCCchhHHHHHhhhhhhh
Q 047943 245 SGLSSLTKLVLTCCDVIEIPQDIGCLSSLELLFLCGNNFSKFTCKYQSTFTAEKTLLELLQYATVI 310 (479)
Q Consensus 245 ~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~~i~~l~~L~~L~~~L~~n~~~ 310 (479)
..+++|+.|++++|.+..+|. .+++|+.|+|++|.++.+| ..+..+++|+.| ++++|.+.
T Consensus 238 ~~l~~L~~L~Ls~N~L~~lp~---~~~~L~~L~Ls~N~L~~lp-~~l~~l~~L~~L--~L~~N~l~ 297 (622)
T 3g06_A 238 VLPSELKELMVSGNRLTSLPM---LPSGLLSLSVYRNQLTRLP-ESLIHLSSETTV--NLEGNPLS 297 (622)
T ss_dssp CCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCCSCC-GGGGGSCTTCEE--ECCSCCCC
T ss_pred CCCCcCcEEECCCCCCCcCCc---ccccCcEEeCCCCCCCcCC-HHHhhccccCEE--EecCCCCC
Confidence 356889999999999888887 6788999999999999998 888899999999 77777653
No 46
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.89 E-value=1e-22 Score=200.97 Aligned_cols=214 Identities=22% Similarity=0.326 Sum_probs=147.8
Q ss_pred CCCcEEEccCCCCCCCCC-CCCCCCCCcEEeecCCCCCCCCCccccccCCccccceeeccCCCceecCccccCCCCCCEE
Q 047943 61 PKLKYINLHNSQYLTGMP-DLSETPNLERLNILNCTNLAYIPSCIHNFNNLRSVIGLCLRNTAIEEVPSSIESLTKLEKL 139 (479)
Q Consensus 61 ~~L~~L~Ls~~~~l~~~p-~l~~l~~L~~L~L~~c~~l~~~p~~l~~l~~L~~L~~L~L~~~~i~~lp~~i~~l~~L~~L 139 (479)
++++.|+|+++.. ..+| .+.++++|++|++++|... .+|..++++.+ |++|++++|.+..+|..++.+++|+.|
T Consensus 81 ~~l~~L~L~~n~l-~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~---L~~L~Ls~n~l~~lp~~l~~l~~L~~L 155 (328)
T 4fcg_A 81 PGRVALELRSVPL-PQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAG---LETLTLARNPLRALPASIASLNRLREL 155 (328)
T ss_dssp TTCCEEEEESSCC-SSCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTT---CSEEEEESCCCCCCCGGGGGCTTCCEE
T ss_pred cceeEEEccCCCc-hhcChhhhhCCCCCEEECCCCCcc-chhHHHhccCC---CCEEECCCCccccCcHHHhcCcCCCEE
Confidence 4444444444432 2333 2444444444444443322 44444433332 333555555556667777777776666
Q ss_pred eccCCCCCCCCCEEecCCCCCCCccchh---------hhccccCCeeeccCccccccCcccccccCCCCCCCCCCCCCCC
Q 047943 140 DLSYCTRLKGLCKLDLGYCSKFECFPEI---------IEKMERLRSVDLQSTEVEELPSSMENLEGLKDLPDSLPNLKSL 210 (479)
Q Consensus 140 ~L~~c~~L~~L~~L~L~~c~~l~~~p~~---------~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~lp~~l~~l~~L 210 (479)
++++| ...+.+|.. ++++++|++|++++|.++.+|..++
T Consensus 156 ~L~~n--------------~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~------------------ 203 (328)
T 4fcg_A 156 SIRAC--------------PELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIA------------------ 203 (328)
T ss_dssp EEEEE--------------TTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGG------------------
T ss_pred ECCCC--------------CCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhc------------------
Confidence 66654 333444443 3458999999999999988876543
Q ss_pred CeeecCCCccccccCCCceeecCCCCCCCCCcccCCCCCCCEEEcCCCCCcc-CCccCCCCCCCCEEeCCCCc-CCccCh
Q 047943 211 QFLNVERLFSIADLDKLEDLSISGRRGLILPPLLSGLSSLTKLVLTCCDVIE-IPQDIGCLSSLELLFLCGNN-FSKFTC 288 (479)
Q Consensus 211 ~~L~l~~l~~l~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~-lp~~l~~l~~L~~L~Ls~n~-l~~lp~ 288 (479)
.+++|++|++++|....+|..+..+++|++|++++|++.+ +|..++.+++|+.|++++|+ ...+|
T Consensus 204 ------------~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p- 270 (328)
T 4fcg_A 204 ------------NLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLP- 270 (328)
T ss_dssp ------------GCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCC-
T ss_pred ------------CCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcc-
Confidence 3456777778889888888889999999999999999887 99999999999999999998 56888
Q ss_pred hhhcCCCchhHHHHHhhhhhhhhccCCccccCCCcccccc
Q 047943 289 KYQSTFTAEKTLLELLQYATVITRASSSSTLFSCNELQAA 328 (479)
Q Consensus 289 ~~i~~l~~L~~L~~~L~~n~~~~~~~~~~~l~~C~~L~~l 328 (479)
..+..+++|+.| ++++|.+.+. ++..+.++++|+.+
T Consensus 271 ~~~~~l~~L~~L--~L~~n~~~~~--iP~~l~~L~~L~~l 306 (328)
T 4fcg_A 271 LDIHRLTQLEKL--DLRGCVNLSR--LPSLIAQLPANCII 306 (328)
T ss_dssp TTGGGCTTCCEE--ECTTCTTCCC--CCGGGGGSCTTCEE
T ss_pred hhhhcCCCCCEE--eCCCCCchhh--ccHHHhhccCceEE
Confidence 889999999999 9999998654 34466777766654
No 47
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.89 E-value=3.7e-22 Score=204.96 Aligned_cols=241 Identities=24% Similarity=0.321 Sum_probs=164.4
Q ss_pred CceEEEecCCCCCCCCCCCCCCCceEEECCCCCCcccc-cccCCCCCCcEEEccCCCCCCCCC-CCCCCCCCcEEeecCC
Q 047943 17 ELRYLHWYEYPLKTLPSNFEPENLLELNLPYSKIETIW-EVKKEAPKLKYINLHNSQYLTGMP-DLSETPNLERLNILNC 94 (479)
Q Consensus 17 ~Lr~L~~~~~~l~~lp~~~~~~~L~~L~L~~s~i~~l~-~~~~~l~~L~~L~Ls~~~~l~~~p-~l~~l~~L~~L~L~~c 94 (479)
..+.++..+..++.+|..+. ++++.|+|++|+++.++ ..+..+++|+.|+|++|......+ .|.++++|++|+|++|
T Consensus 44 ~~~~v~c~~~~l~~iP~~~~-~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n 122 (440)
T 3zyj_A 44 QFSKVICVRKNLREVPDGIS-TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122 (440)
T ss_dssp TSCEEECCSCCCSSCCSCCC-TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS
T ss_pred CCCEEEeCCCCcCcCCCCCC-CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC
Confidence 45677888888888887663 68899999999998775 678889999999999886443333 4888899999999987
Q ss_pred CCCCCCCc-cccccCCccccceeeccCCCceecCc-cccCCCCCCEEeccCCCCCCCCCEEecCCCCCCCccch-hhhcc
Q 047943 95 TNLAYIPS-CIHNFNNLRSVIGLCLRNTAIEEVPS-SIESLTKLEKLDLSYCTRLKGLCKLDLGYCSKFECFPE-IIEKM 171 (479)
Q Consensus 95 ~~l~~~p~-~l~~l~~L~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~c~~L~~L~~L~L~~c~~l~~~p~-~~~~l 171 (479)
.. ..+|. .+.+ +++|++|++++|.+..++. .+..+++|+.|++++ |..+..++. .+.++
T Consensus 123 ~l-~~~~~~~~~~---l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~--------------~~~l~~i~~~~~~~l 184 (440)
T 3zyj_A 123 RL-TTIPNGAFVY---LSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGE--------------LKRLSYISEGAFEGL 184 (440)
T ss_dssp CC-SSCCTTTSCS---CSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCC--------------CTTCCEECTTTTTTC
T ss_pred cC-CeeCHhHhhc---cccCceeeCCCCcccccCHHHhhhCcccCEeCCCC--------------CCCcceeCcchhhcc
Confidence 54 44443 4444 4556668899988887765 456666666666554 445554443 57788
Q ss_pred ccCCeeeccCccccccCcccccccCCCCCCCCCCCCCCCCeeecCCCccccccCCCceeecCCCCCCCC-CcccCCCCCC
Q 047943 172 ERLRSVDLQSTEVEELPSSMENLEGLKDLPDSLPNLKSLQFLNVERLFSIADLDKLEDLSISGRRGLIL-PPLLSGLSSL 250 (479)
Q Consensus 172 ~~L~~L~L~~~~i~~lp~~i~~l~~L~~lp~~l~~l~~L~~L~l~~l~~l~~l~~L~~L~l~~~~~~~l-p~~~~~l~~L 250 (479)
++|++|++++|.++++|. +. .+++|+.|++++|....+ |..+.++++|
T Consensus 185 ~~L~~L~L~~n~l~~~~~--------------~~-----------------~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 233 (440)
T 3zyj_A 185 SNLRYLNLAMCNLREIPN--------------LT-----------------PLIKLDELDLSGNHLSAIRPGSFQGLMHL 233 (440)
T ss_dssp SSCCEEECTTSCCSSCCC--------------CT-----------------TCSSCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred cccCeecCCCCcCccccc--------------cC-----------------CCcccCEEECCCCccCccChhhhccCccC
Confidence 889999999888877652 12 234455555555653332 4556666777
Q ss_pred CEEEcCCCCCcc-CCccCCCCCCCCEEeCCCCcCCccChhhhcCCCchhHHHHHhhhhhh
Q 047943 251 TKLVLTCCDVIE-IPQDIGCLSSLELLFLCGNNFSKFTCKYQSTFTAEKTLLELLQYATV 309 (479)
Q Consensus 251 ~~L~L~~~~l~~-lp~~l~~l~~L~~L~Ls~n~l~~lp~~~i~~l~~L~~L~~~L~~n~~ 309 (479)
+.|++++|.+.+ .+..+..+++|+.|+|++|+++.+|...+..+++|+.| ++++|.+
T Consensus 234 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L--~L~~Np~ 291 (440)
T 3zyj_A 234 QKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERI--HLHHNPW 291 (440)
T ss_dssp CEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEE--ECCSSCE
T ss_pred CEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEE--EcCCCCc
Confidence 777777777666 45556666777777777777766664455666677777 6666654
No 48
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.89 E-value=1.7e-21 Score=208.28 Aligned_cols=294 Identities=21% Similarity=0.226 Sum_probs=210.4
Q ss_pred CccCCCccCceEEEecCCCCCCCCCC-C-CCCCceEEECCCCCCccccc-ccCCCCCCcEEEccCCCCCCCCC--CCCCC
Q 047943 9 QSLEYLPEELRYLHWYEYPLKTLPSN-F-EPENLLELNLPYSKIETIWE-VKKEAPKLKYINLHNSQYLTGMP--DLSET 83 (479)
Q Consensus 9 ~~~~~l~~~Lr~L~~~~~~l~~lp~~-~-~~~~L~~L~L~~s~i~~l~~-~~~~l~~L~~L~Ls~~~~l~~~p--~l~~l 83 (479)
..|..++ +||+|++++|.++.+|+. | .+++|++|+|++|+++.++. .++.+++|+.|+|++|.. +.++ .|+++
T Consensus 70 ~~f~~l~-~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l-~~l~~~~~~~L 147 (635)
T 4g8a_A 70 YSFFSFP-ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL-ASLENFPIGHL 147 (635)
T ss_dssp TTTTTCT-TCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCC-CCSTTCCCTTC
T ss_pred HHHhCCC-CCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcC-CCCChhhhhcC
Confidence 4677888 899999999999999764 6 79999999999999999875 578999999999999864 4554 48899
Q ss_pred CCCcEEeecCCCCCC-CCCccccccCCccccceeeccCCCceecCc-c--------------------------------
Q 047943 84 PNLERLNILNCTNLA-YIPSCIHNFNNLRSVIGLCLRNTAIEEVPS-S-------------------------------- 129 (479)
Q Consensus 84 ~~L~~L~L~~c~~l~-~~p~~l~~l~~L~~L~~L~L~~~~i~~lp~-~-------------------------------- 129 (479)
++|++|++++|.... ..|..++++.+|+. |++++|.+..++. .
T Consensus 148 ~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~---L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~ 224 (635)
T 4g8a_A 148 KTLKELNVAHNLIQSFKLPEYFSNLTNLEH---LDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI 224 (635)
T ss_dssp TTCCEEECCSSCCCCCCCCGGGGGCTTCCE---EECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC
T ss_pred cccCeeccccCccccCCCchhhccchhhhh---hcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccch
Confidence 999999999976543 34566665555443 4444444332211 0
Q ss_pred --------------------------------------------------------------------------------
Q 047943 130 -------------------------------------------------------------------------------- 129 (479)
Q Consensus 130 -------------------------------------------------------------------------------- 129 (479)
T Consensus 225 ~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~ 304 (635)
T 4g8a_A 225 RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNC 304 (635)
T ss_dssp EEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGG
T ss_pred hhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhh
Confidence
Q ss_pred -------------------ccCCCCCCEEeccCCC-----------------------------CCCCCCEEecCCCCCC
Q 047943 130 -------------------IESLTKLEKLDLSYCT-----------------------------RLKGLCKLDLGYCSKF 161 (479)
Q Consensus 130 -------------------i~~l~~L~~L~L~~c~-----------------------------~L~~L~~L~L~~c~~l 161 (479)
+....+|+.|++.++. .+++|+.|+++++...
T Consensus 305 ~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~ 384 (635)
T 4g8a_A 305 LTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLS 384 (635)
T ss_dssp GTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCB
T ss_pred hcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccchhhccccc
Confidence 0111233334333321 3556788888876543
Q ss_pred --CccchhhhccccCCeeeccCccccccCcccc-------------------------cccCCCC-----------CCCC
Q 047943 162 --ECFPEIIEKMERLRSVDLQSTEVEELPSSME-------------------------NLEGLKD-----------LPDS 203 (479)
Q Consensus 162 --~~~p~~~~~l~~L~~L~L~~~~i~~lp~~i~-------------------------~l~~L~~-----------lp~~ 203 (479)
...+.....+.+|+++++..+.+..++..+. .+.+++. .+..
T Consensus 385 ~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~ 464 (635)
T 4g8a_A 385 FKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI 464 (635)
T ss_dssp EEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTT
T ss_pred cccccccchhhhhhhhhhhccccccccccccccccccccchhhhhccccccccccccccccccccccccccccccccccc
Confidence 2344555556666666666555443333322 3333322 3566
Q ss_pred CCCCCCCCeeecCCC--------ccccccCCCceeecCCCCCCCC-CcccCCCCCCCEEEcCCCCCccC-CccCCCCCCC
Q 047943 204 LPNLKSLQFLNVERL--------FSIADLDKLEDLSISGRRGLIL-PPLLSGLSSLTKLVLTCCDVIEI-PQDIGCLSSL 273 (479)
Q Consensus 204 l~~l~~L~~L~l~~l--------~~l~~l~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~L~~~~l~~l-p~~l~~l~~L 273 (479)
+..+++|+.|++++. ..+..+++|+.|++++|....+ |..+.++++|++|+|++|++.++ |..+..+++|
T Consensus 465 ~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L 544 (635)
T 4g8a_A 465 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSL 544 (635)
T ss_dssp TTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTC
T ss_pred cccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCC
Confidence 778899999999872 4567889999999999996554 67789999999999999999994 5678999999
Q ss_pred CEEeCCCCcCCccChhhhcCC-CchhHHHHHhhhhhh
Q 047943 274 ELLFLCGNNFSKFTCKYQSTF-TAEKTLLELLQYATV 309 (479)
Q Consensus 274 ~~L~Ls~n~l~~lp~~~i~~l-~~L~~L~~~L~~n~~ 309 (479)
+.|+|++|+++.++...+..+ ++|+.| ++++|++
T Consensus 545 ~~L~Ls~N~l~~~~~~~l~~l~~~L~~L--~L~~Np~ 579 (635)
T 4g8a_A 545 QVLDYSLNHIMTSKKQELQHFPSSLAFL--NLTQNDF 579 (635)
T ss_dssp CEEECTTSCCCBCCSSCTTCCCTTCCEE--ECTTCCB
T ss_pred CEEECCCCcCCCCCHHHHHhhhCcCCEE--EeeCCCC
Confidence 999999999998764678777 689999 8888764
No 49
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.89 E-value=4.3e-22 Score=205.16 Aligned_cols=235 Identities=24% Similarity=0.305 Sum_probs=148.7
Q ss_pred CceEEEecCCCCCCCCCCCCCCCceEEECCCCCCccc-ccccCCCCCCcEEEccCCCCCCCCC-CCCCCCCCcEEeecCC
Q 047943 17 ELRYLHWYEYPLKTLPSNFEPENLLELNLPYSKIETI-WEVKKEAPKLKYINLHNSQYLTGMP-DLSETPNLERLNILNC 94 (479)
Q Consensus 17 ~Lr~L~~~~~~l~~lp~~~~~~~L~~L~L~~s~i~~l-~~~~~~l~~L~~L~Ls~~~~l~~~p-~l~~l~~L~~L~L~~c 94 (479)
..+.++..+..++.+|..+ ++++++|+|++|+++.+ +..+..+++|+.|+|++|......+ .|.++++|++|+|++|
T Consensus 55 ~~~~v~c~~~~l~~iP~~~-~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n 133 (452)
T 3zyi_A 55 QFSKVVCTRRGLSEVPQGI-PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN 133 (452)
T ss_dssp SSCEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CCcEEEECCCCcCccCCCC-CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC
Confidence 3567888888888898765 36899999999999887 5678899999999999986544444 5888999999999997
Q ss_pred CCCCCCCc-cccccCCccccceeeccCCCceecCc-cccCCCCCCEEeccCCCCCCCCCEEecCCCCCCCccch-hhhcc
Q 047943 95 TNLAYIPS-CIHNFNNLRSVIGLCLRNTAIEEVPS-SIESLTKLEKLDLSYCTRLKGLCKLDLGYCSKFECFPE-IIEKM 171 (479)
Q Consensus 95 ~~l~~~p~-~l~~l~~L~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~c~~L~~L~~L~L~~c~~l~~~p~-~~~~l 171 (479)
... .+|. .+.+ +++|++|++++|.+..+|. .+..+++|+.|++++ |..++.++. .+.++
T Consensus 134 ~l~-~~~~~~~~~---l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~--------------~~~l~~i~~~~~~~l 195 (452)
T 3zyi_A 134 WLT-VIPSGAFEY---LSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGE--------------LKKLEYISEGAFEGL 195 (452)
T ss_dssp CCS-BCCTTTSSS---CTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCC--------------CTTCCEECTTTTTTC
T ss_pred cCC-ccChhhhcc---cCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCC--------------CCCccccChhhccCC
Confidence 644 4443 3444 4556679999999888775 466666666666665 444444443 46777
Q ss_pred ccCCeeeccCccccccCcccccccCCCCCCCCCCCCCCCCeeecCCC-------ccccccCCCceeecCCCCCCC-CCcc
Q 047943 172 ERLRSVDLQSTEVEELPSSMENLEGLKDLPDSLPNLKSLQFLNVERL-------FSIADLDKLEDLSISGRRGLI-LPPL 243 (479)
Q Consensus 172 ~~L~~L~L~~~~i~~lp~~i~~l~~L~~lp~~l~~l~~L~~L~l~~l-------~~l~~l~~L~~L~l~~~~~~~-lp~~ 243 (479)
++|++|++++|.+.++|. +..+++|+.|++++. ..+.++++|+.|++++|.... .+..
T Consensus 196 ~~L~~L~L~~n~l~~~~~--------------~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 261 (452)
T 3zyi_A 196 FNLKYLNLGMCNIKDMPN--------------LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNA 261 (452)
T ss_dssp TTCCEEECTTSCCSSCCC--------------CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTT
T ss_pred CCCCEEECCCCccccccc--------------ccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHH
Confidence 888888888888776652 233444455554440 223344444444444444222 2333
Q ss_pred cCCCCCCCEEEcCCCCCccCC-ccCCCCCCCCEEeCCCCcCC
Q 047943 244 LSGLSSLTKLVLTCCDVIEIP-QDIGCLSSLELLFLCGNNFS 284 (479)
Q Consensus 244 ~~~l~~L~~L~L~~~~l~~lp-~~l~~l~~L~~L~Ls~n~l~ 284 (479)
+.++++|+.|+|++|.+.++| ..+..+++|+.|+|++|.+.
T Consensus 262 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 262 FDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp TTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred hcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 444455555555555544432 22344445555555555443
No 50
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.88 E-value=4.6e-23 Score=205.41 Aligned_cols=259 Identities=16% Similarity=0.152 Sum_probs=171.2
Q ss_pred CceEEEecCCCCCCCCCCCCCCCceEEECCCCCCccccc-ccCCCCCCcEEEccCCCCCCCCC-CCCCCCCCcEEeecCC
Q 047943 17 ELRYLHWYEYPLKTLPSNFEPENLLELNLPYSKIETIWE-VKKEAPKLKYINLHNSQYLTGMP-DLSETPNLERLNILNC 94 (479)
Q Consensus 17 ~Lr~L~~~~~~l~~lp~~~~~~~L~~L~L~~s~i~~l~~-~~~~l~~L~~L~Ls~~~~l~~~p-~l~~l~~L~~L~L~~c 94 (479)
.....+.+++.++.+|..+. ++|++|++++++++.++. .+..+++|+.|++++|......| .+.++++|++|++++|
T Consensus 32 ~~~~c~~~~~~l~~iP~~~~-~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 110 (353)
T 2z80_A 32 RNGICKGSSGSLNSIPSGLT-EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN 110 (353)
T ss_dssp TTSEEECCSTTCSSCCTTCC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CCeEeeCCCCCccccccccc-ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCC
Confidence 34457788888889988663 589999999999988875 68889999999999886544444 4888999999999986
Q ss_pred CCCCCCCcc-ccccCCccccceeeccCCCceecCc--cccCCCCCCEEeccCCCCCCCCCEEecCCCCCCCcc-chhhhc
Q 047943 95 TNLAYIPSC-IHNFNNLRSVIGLCLRNTAIEEVPS--SIESLTKLEKLDLSYCTRLKGLCKLDLGYCSKFECF-PEIIEK 170 (479)
Q Consensus 95 ~~l~~~p~~-l~~l~~L~~L~~L~L~~~~i~~lp~--~i~~l~~L~~L~L~~c~~L~~L~~L~L~~c~~l~~~-p~~~~~ 170 (479)
.. ..+|.. +++ +++|++|++++|.+..+|. .++.+++|+.|++++| ..++.+ +..+++
T Consensus 111 ~l-~~~~~~~~~~---l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n--------------~~~~~~~~~~~~~ 172 (353)
T 2z80_A 111 YL-SNLSSSWFKP---LSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNM--------------DTFTKIQRKDFAG 172 (353)
T ss_dssp CC-SSCCHHHHTT---CTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEES--------------SSCCEECTTTTTT
T ss_pred cC-CcCCHhHhCC---CccCCEEECCCCCCcccCchhhhccCCCCcEEECCCC--------------ccccccCHHHccC
Confidence 54 445543 444 4556669999998888876 5677777777777664 222222 234555
Q ss_pred cccCCeeeccCccccccCcccccccCCCCCCCCCCCCCCCCeeecCC--Cc-----cccccCCCceeecCCCCCCCCCcc
Q 047943 171 MERLRSVDLQSTEVEELPSSMENLEGLKDLPDSLPNLKSLQFLNVER--LF-----SIADLDKLEDLSISGRRGLILPPL 243 (479)
Q Consensus 171 l~~L~~L~L~~~~i~~lp~~i~~l~~L~~lp~~l~~l~~L~~L~l~~--l~-----~l~~l~~L~~L~l~~~~~~~lp~~ 243 (479)
+++|++|++++|.+.+++ |..+.++++|++|++++ +. .+..+++|+.|++++|....++..
T Consensus 173 l~~L~~L~l~~n~l~~~~------------~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 240 (353)
T 2z80_A 173 LTFLEELEIDASDLQSYE------------PKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFS 240 (353)
T ss_dssp CCEEEEEEEEETTCCEEC------------TTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC
T ss_pred CCCCCEEECCCCCcCccC------------HHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccccccc
Confidence 555666666655555431 12333444555555544 11 122366777777777774433211
Q ss_pred ----cCCCCCCCEEEcCCCCCcc-----CCccCCCCCCCCEEeCCCCcCCccChhh-hcCCCchhHHHHHhhhhhh
Q 047943 244 ----LSGLSSLTKLVLTCCDVIE-----IPQDIGCLSSLELLFLCGNNFSKFTCKY-QSTFTAEKTLLELLQYATV 309 (479)
Q Consensus 244 ----~~~l~~L~~L~L~~~~l~~-----lp~~l~~l~~L~~L~Ls~n~l~~lp~~~-i~~l~~L~~L~~~L~~n~~ 309 (479)
......++.++++++.+.+ +|..+..+++|+.|++++|.++.+| .. +..+++|++| ++++|++
T Consensus 241 ~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~-~~~~~~l~~L~~L--~L~~N~~ 313 (353)
T 2z80_A 241 ELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVP-DGIFDRLTSLQKI--WLHTNPW 313 (353)
T ss_dssp ------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEE--ECCSSCB
T ss_pred ccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccC-HHHHhcCCCCCEE--EeeCCCc
Confidence 2234667777777777664 6667777888888888888888888 44 4778888888 6665543
No 51
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.88 E-value=1.8e-22 Score=197.90 Aligned_cols=218 Identities=17% Similarity=0.227 Sum_probs=180.7
Q ss_pred CCCcEEEccCCCCCC--CCC-CCCCCCCCcEEeecC-CCCCCCCCccccccCCccccceeeccCCCce-ecCccccCCCC
Q 047943 61 PKLKYINLHNSQYLT--GMP-DLSETPNLERLNILN-CTNLAYIPSCIHNFNNLRSVIGLCLRNTAIE-EVPSSIESLTK 135 (479)
Q Consensus 61 ~~L~~L~Ls~~~~l~--~~p-~l~~l~~L~~L~L~~-c~~l~~~p~~l~~l~~L~~L~~L~L~~~~i~-~lp~~i~~l~~ 135 (479)
.+++.|+++++.... .+| .+.++++|++|++++ +.....+|..++++++ |++|++++|.+. .+|..++.+++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~---L~~L~Ls~n~l~~~~p~~~~~l~~ 126 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQ---LHYLYITHTNVSGAIPDFLSQIKT 126 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTT---CSEEEEEEECCEEECCGGGGGCTT
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCC---CCEEECcCCeeCCcCCHHHhCCCC
Confidence 689999999998766 566 689999999999996 6666678888776555 566999999998 78888888888
Q ss_pred CCEEeccCCCCCCCCCEEecCCCCCCCccchhhhccccCCeeeccCcccc-ccCcccccccCCCCCCCCCCCCC-CCCee
Q 047943 136 LEKLDLSYCTRLKGLCKLDLGYCSKFECFPEIIEKMERLRSVDLQSTEVE-ELPSSMENLEGLKDLPDSLPNLK-SLQFL 213 (479)
Q Consensus 136 L~~L~L~~c~~L~~L~~L~L~~c~~l~~~p~~~~~l~~L~~L~L~~~~i~-~lp~~i~~l~~L~~lp~~l~~l~-~L~~L 213 (479)
|++|++++ |...+.+|..++++++|++|++++|.+. .+|..++. +. .|+.|
T Consensus 127 L~~L~Ls~--------------N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~-------------l~~~L~~L 179 (313)
T 1ogq_A 127 LVTLDFSY--------------NALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS-------------FSKLFTSM 179 (313)
T ss_dssp CCEEECCS--------------SEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGC-------------CCTTCCEE
T ss_pred CCEEeCCC--------------CccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhh-------------hhhcCcEE
Confidence 88887776 3444578899999999999999999998 47765544 44 78889
Q ss_pred ecCCC-------ccccccCCCceeecCCCCC-CCCCcccCCCCCCCEEEcCCCCCccCCccCCCCCCCCEEeCCCCcCC-
Q 047943 214 NVERL-------FSIADLDKLEDLSISGRRG-LILPPLLSGLSSLTKLVLTCCDVIEIPQDIGCLSSLELLFLCGNNFS- 284 (479)
Q Consensus 214 ~l~~l-------~~l~~l~~L~~L~l~~~~~-~~lp~~~~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~- 284 (479)
++++. ..+..++ |+.|++++|.. ...|..+..+++|+.|++++|.+.+.+..+..+++|++|++++|.++
T Consensus 180 ~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~ 258 (313)
T 1ogq_A 180 TISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYG 258 (313)
T ss_dssp ECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEE
T ss_pred ECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccC
Confidence 98872 4556666 99999999984 46777888999999999999999985555889999999999999998
Q ss_pred ccChhhhcCCCchhHHHHHhhhhhhhhc
Q 047943 285 KFTCKYQSTFTAEKTLLELLQYATVITR 312 (479)
Q Consensus 285 ~lp~~~i~~l~~L~~L~~~L~~n~~~~~ 312 (479)
.+| ..+..+++|+.| ++++|.+.+.
T Consensus 259 ~~p-~~l~~l~~L~~L--~Ls~N~l~~~ 283 (313)
T 1ogq_A 259 TLP-QGLTQLKFLHSL--NVSFNNLCGE 283 (313)
T ss_dssp CCC-GGGGGCTTCCEE--ECCSSEEEEE
T ss_pred cCC-hHHhcCcCCCEE--ECcCCccccc
Confidence 788 899999999999 8888877543
No 52
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.87 E-value=6.8e-21 Score=196.15 Aligned_cols=271 Identities=22% Similarity=0.286 Sum_probs=158.9
Q ss_pred cCceEEEecCCCCCCCCCCCCCCCceEEECCCCCCcccccccCCCCCCcEEEccCCCCCCCCCCCCCCCCCcEEeecCCC
Q 047943 16 EELRYLHWYEYPLKTLPSNFEPENLLELNLPYSKIETIWEVKKEAPKLKYINLHNSQYLTGMPDLSETPNLERLNILNCT 95 (479)
Q Consensus 16 ~~Lr~L~~~~~~l~~lp~~~~~~~L~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c~ 95 (479)
.+|++|+++++.++.+|.. +++|++|++++|+++.+| .++.+++|+.|++++|. ++.+|+. .++|++|++++|.
T Consensus 111 ~~L~~L~l~~n~l~~l~~~--~~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~-l~~lp~~--~~~L~~L~L~~n~ 184 (454)
T 1jl5_A 111 QSLKSLLVDNNNLKALSDL--PPLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNS-LKKLPDL--PPSLEFIAAGNNQ 184 (454)
T ss_dssp TTCCEEECCSSCCSCCCSC--CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSC-CSCCCCC--CTTCCEEECCSSC
T ss_pred CCCcEEECCCCccCcccCC--CCCCCEEECcCCCCCCCc-ccCCCCCCCEEECCCCc-CcccCCC--cccccEEECcCCc
Confidence 4677777777777666543 256777777777777766 46777777777777764 3345532 2467777777654
Q ss_pred CCCCCCccccccCCccccceeeccCCCceecCccccCCCCCCEEeccCCC--------CCCCCCEEecCCCCCCCccchh
Q 047943 96 NLAYIPSCIHNFNNLRSVIGLCLRNTAIEEVPSSIESLTKLEKLDLSYCT--------RLKGLCKLDLGYCSKFECFPEI 167 (479)
Q Consensus 96 ~l~~~p~~l~~l~~L~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~--------~L~~L~~L~L~~c~~l~~~p~~ 167 (479)
. ..+| . +.+++.|+.|++++|.+..+|... ++|+.|++++|. ++++|++|++++|... .+|..
T Consensus 185 l-~~l~-~---~~~l~~L~~L~l~~N~l~~l~~~~---~~L~~L~l~~n~l~~lp~~~~l~~L~~L~l~~N~l~-~l~~~ 255 (454)
T 1jl5_A 185 L-EELP-E---LQNLPFLTAIYADNNSLKKLPDLP---LSLESIVAGNNILEELPELQNLPFLTTIYADNNLLK-TLPDL 255 (454)
T ss_dssp C-SSCC-C---CTTCTTCCEEECCSSCCSSCCCCC---TTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCS-SCCSC
T ss_pred C-CcCc-c---ccCCCCCCEEECCCCcCCcCCCCc---CcccEEECcCCcCCcccccCCCCCCCEEECCCCcCC-ccccc
Confidence 3 3344 2 334444455666666665554322 355566655542 3445566666654332 33432
Q ss_pred hhccccCCeeeccCccccccCcccccccCCCC-------CCCCCCCCCCCCeeecCC--Ccccccc-CCCceeecCCCCC
Q 047943 168 IEKMERLRSVDLQSTEVEELPSSMENLEGLKD-------LPDSLPNLKSLQFLNVER--LFSIADL-DKLEDLSISGRRG 237 (479)
Q Consensus 168 ~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~-------lp~~l~~l~~L~~L~l~~--l~~l~~l-~~L~~L~l~~~~~ 237 (479)
+++|++|++++|.+.++|....+++.|.. +|. -.++|+.|++++ +..+..+ ++|++|++++|..
T Consensus 256 ---~~~L~~L~l~~N~l~~l~~~~~~L~~L~ls~N~l~~l~~---~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l 329 (454)
T 1jl5_A 256 ---PPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSE---LPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKL 329 (454)
T ss_dssp ---CTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSEESC---CCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCC
T ss_pred ---ccccCEEECCCCcccccCcccCcCCEEECcCCccCcccC---cCCcCCEEECcCCcCCcccCCcCcCCEEECCCCcc
Confidence 24566666666666655543322222111 111 125789999987 4555556 5899999999997
Q ss_pred CCCCcccCCCCCCCEEEcCCCCCccCCccCCCCCCCCEEeCCCCcCCc---cChhhhcCC-------------CchhHHH
Q 047943 238 LILPPLLSGLSSLTKLVLTCCDVIEIPQDIGCLSSLELLFLCGNNFSK---FTCKYQSTF-------------TAEKTLL 301 (479)
Q Consensus 238 ~~lp~~~~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~---lp~~~i~~l-------------~~L~~L~ 301 (479)
..+|.. +++|+.|++++|.+.++|. .+++|++|++++|.++. +| ..+..+ ++|+.|
T Consensus 330 ~~lp~~---~~~L~~L~L~~N~l~~lp~---~l~~L~~L~L~~N~l~~l~~ip-~~l~~L~~n~~~~~i~~~~~~L~~L- 401 (454)
T 1jl5_A 330 IELPAL---PPRLERLIASFNHLAEVPE---LPQNLKQLHVEYNPLREFPDIP-ESVEDLRMNSHLAEVPELPQNLKQL- 401 (454)
T ss_dssp SCCCCC---CTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSSCCCCC-TTCCEEECCC----------------
T ss_pred cccccc---CCcCCEEECCCCccccccc---hhhhccEEECCCCCCCcCCCCh-HHHHhhhhcccccccccccCcCCEE-
Confidence 778774 5899999999999999888 57899999999999876 66 677777 889999
Q ss_pred HHhhhhhhhhccCCc
Q 047943 302 ELLQYATVITRASSS 316 (479)
Q Consensus 302 ~~L~~n~~~~~~~~~ 316 (479)
++++|.+.+.+.++
T Consensus 402 -~ls~N~l~~~~~iP 415 (454)
T 1jl5_A 402 -HVETNPLREFPDIP 415 (454)
T ss_dssp ---------------
T ss_pred -ECCCCcCCccccch
Confidence 99999987543333
No 53
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.87 E-value=1.1e-21 Score=191.43 Aligned_cols=234 Identities=20% Similarity=0.270 Sum_probs=134.1
Q ss_pred eEEEecCCCCCCCCCCCCCCCceEEECCCCCCcccccc-cCCCCCCcEEEccCCCCCCC--CC-CCCCCCCCcEEeecCC
Q 047943 19 RYLHWYEYPLKTLPSNFEPENLLELNLPYSKIETIWEV-KKEAPKLKYINLHNSQYLTG--MP-DLSETPNLERLNILNC 94 (479)
Q Consensus 19 r~L~~~~~~l~~lp~~~~~~~L~~L~L~~s~i~~l~~~-~~~l~~L~~L~Ls~~~~l~~--~p-~l~~l~~L~~L~L~~c 94 (479)
+.+++++..++.+|..+ +++|++|++++++++.++.. ++.+++|+.|++++|..... .+ .+..+++|++|++++|
T Consensus 10 ~~l~c~~~~l~~ip~~~-~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n 88 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGI-PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88 (306)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSC
T ss_pred CEEEcCCCCcccCCCCC-CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCC
Confidence 45677777778887755 36788888888888877754 57788888888887754321 12 3455777888888776
Q ss_pred CCCCCCCccccccCCccccceeeccCCCceecCc--cccCCCCCCEEeccCCCCCCCCCEEecCCCCCCCccchhhhccc
Q 047943 95 TNLAYIPSCIHNFNNLRSVIGLCLRNTAIEEVPS--SIESLTKLEKLDLSYCTRLKGLCKLDLGYCSKFECFPEIIEKME 172 (479)
Q Consensus 95 ~~l~~~p~~l~~l~~L~~L~~L~L~~~~i~~lp~--~i~~l~~L~~L~L~~c~~L~~L~~L~L~~c~~l~~~p~~~~~l~ 172 (479)
.. ..+|..+.. +++|++|++++|.+..++. .+..+++|+.|++++ |......+..+..++
T Consensus 89 ~i-~~l~~~~~~---l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~--------------n~l~~~~~~~~~~l~ 150 (306)
T 2z66_A 89 GV-ITMSSNFLG---LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH--------------THTRVAFNGIFNGLS 150 (306)
T ss_dssp SE-EEEEEEEET---CTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTT--------------SCCEECSTTTTTTCT
T ss_pred cc-ccChhhcCC---CCCCCEEECCCCcccccccchhhhhccCCCEEECCC--------------CcCCccchhhcccCc
Confidence 43 344444443 4445557777777776653 455555555555444 444444556666777
Q ss_pred cCCeeeccCccccc--cCcccccccCCCCCCCCCCCCCCCCeeecCC--C-----ccccccCCCceeecCCCCCCCCCc-
Q 047943 173 RLRSVDLQSTEVEE--LPSSMENLEGLKDLPDSLPNLKSLQFLNVER--L-----FSIADLDKLEDLSISGRRGLILPP- 242 (479)
Q Consensus 173 ~L~~L~L~~~~i~~--lp~~i~~l~~L~~lp~~l~~l~~L~~L~l~~--l-----~~l~~l~~L~~L~l~~~~~~~lp~- 242 (479)
+|++|++++|.+.+ +|. .+..+++|++|++++ + ..+..+++|++|++++|....++.
T Consensus 151 ~L~~L~l~~n~l~~~~~~~-------------~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 217 (306)
T 2z66_A 151 SLEVLKMAGNSFQENFLPD-------------IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTF 217 (306)
T ss_dssp TCCEEECTTCEEGGGEECS-------------CCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSG
T ss_pred CCCEEECCCCccccccchh-------------HHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChh
Confidence 77777777777664 333 223334444444443 0 123334445555555555333332
Q ss_pred ccCCCCCCCEEEcCCCCCcc-CCccCCCCC-CCCEEeCCCCcCC
Q 047943 243 LLSGLSSLTKLVLTCCDVIE-IPQDIGCLS-SLELLFLCGNNFS 284 (479)
Q Consensus 243 ~~~~l~~L~~L~L~~~~l~~-lp~~l~~l~-~L~~L~Ls~n~l~ 284 (479)
.+..+++|+.|++++|.+.+ .|..+..++ +|++|++++|+++
T Consensus 218 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 218 PYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp GGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEE
T ss_pred hccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCee
Confidence 34445555555555555554 444444442 5555555555544
No 54
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.87 E-value=3.1e-22 Score=196.45 Aligned_cols=255 Identities=19% Similarity=0.158 Sum_probs=175.8
Q ss_pred ceEEEecCCCCCCCCCC-C-CCCCceEEECCCCCCcccc-cccCCCCCCcEEEccCCCCCCCCCCCCCCCCCcEEeecCC
Q 047943 18 LRYLHWYEYPLKTLPSN-F-EPENLLELNLPYSKIETIW-EVKKEAPKLKYINLHNSQYLTGMPDLSETPNLERLNILNC 94 (479)
Q Consensus 18 Lr~L~~~~~~l~~lp~~-~-~~~~L~~L~L~~s~i~~l~-~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c 94 (479)
++..++....+...+.. + .+++|++|+|++|+++.++ ..+..+++|+.|++++|... ..+++..+++|++|++++|
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~l~~L~~L~Ls~n 90 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLY-ETLDLESLSTLRTLDLNNN 90 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCE-EEEEETTCTTCCEEECCSS
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCC-cchhhhhcCCCCEEECcCC
Confidence 34444444444333222 2 4567777888777777654 56777777777777777543 2334777777777777776
Q ss_pred CCCCCCCccccccCCccccceeeccCCCceecCccccCCCCCCEEeccCCCCCCCCCEEecCCCCCCCccchhhhccccC
Q 047943 95 TNLAYIPSCIHNFNNLRSVIGLCLRNTAIEEVPSSIESLTKLEKLDLSYCTRLKGLCKLDLGYCSKFECFPEIIEKMERL 174 (479)
Q Consensus 95 ~~l~~~p~~l~~l~~L~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~L~~L~~L~L~~c~~l~~~p~~~~~l~~L 174 (479)
.. .. +...+.|+.|++++|.+..++.. .++ +|++|++++|......+..++.+++|
T Consensus 91 ~l-~~-------l~~~~~L~~L~l~~n~l~~~~~~--~~~--------------~L~~L~l~~N~l~~~~~~~~~~l~~L 146 (317)
T 3o53_A 91 YV-QE-------LLVGPSIETLHAANNNISRVSCS--RGQ--------------GKKNIYLANNKITMLRDLDEGCRSRV 146 (317)
T ss_dssp EE-EE-------EEECTTCCEEECCSSCCSEEEEC--CCS--------------SCEEEECCSSCCCSGGGBCTGGGSSE
T ss_pred cc-cc-------ccCCCCcCEEECCCCccCCcCcc--ccC--------------CCCEEECCCCCCCCccchhhhccCCC
Confidence 42 21 12234566677777777665432 234 45555555555544445566777778
Q ss_pred CeeeccCccccccCc-ccccccCCCCCCCCCCCCCCCCeeecCC-----CccccccCCCceeecCCCCCCCCCcccCCCC
Q 047943 175 RSVDLQSTEVEELPS-SMENLEGLKDLPDSLPNLKSLQFLNVER-----LFSIADLDKLEDLSISGRRGLILPPLLSGLS 248 (479)
Q Consensus 175 ~~L~L~~~~i~~lp~-~i~~l~~L~~lp~~l~~l~~L~~L~l~~-----l~~l~~l~~L~~L~l~~~~~~~lp~~~~~l~ 248 (479)
++|++++|.+.+++. .+ ...+++|++|++++ ++....+++|++|++++|....+|..+..++
T Consensus 147 ~~L~Ls~N~l~~~~~~~~------------~~~l~~L~~L~L~~N~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~ 214 (317)
T 3o53_A 147 QYLDLKLNEIDTVNFAEL------------AASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAA 214 (317)
T ss_dssp EEEECTTSCCCEEEGGGG------------GGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCEECGGGGGGT
T ss_pred CEEECCCCCCCcccHHHH------------hhccCcCCEEECCCCcCcccccccccccCCEEECCCCcCCcchhhhcccC
Confidence 888888877776432 11 12345677777766 2334457899999999999888888888999
Q ss_pred CCCEEEcCCCCCccCCccCCCCCCCCEEeCCCCcCC--ccChhhhcCCCchhHHHHHhhhhhhhhc
Q 047943 249 SLTKLVLTCCDVIEIPQDIGCLSSLELLFLCGNNFS--KFTCKYQSTFTAEKTLLELLQYATVITR 312 (479)
Q Consensus 249 ~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~--~lp~~~i~~l~~L~~L~~~L~~n~~~~~ 312 (479)
+|+.|++++|.+.++|..+..+++|+.|++++|.++ .+| ..+..+++|+.+ +++++.....
T Consensus 215 ~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~-~~~~~~~~L~~l--~l~~~~~l~~ 277 (317)
T 3o53_A 215 GVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLR-DFFSKNQRVQTV--AKQTVKKLTG 277 (317)
T ss_dssp TCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHHHHH-HHHHTCHHHHHH--HHHHHHHHHS
T ss_pred cccEEECcCCcccchhhHhhcCCCCCEEEccCCCccCcCHH-HHHhccccceEE--ECCCchhccC
Confidence 999999999999999999999999999999999988 677 889999999999 8887665443
No 55
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.86 E-value=7.7e-21 Score=183.44 Aligned_cols=153 Identities=17% Similarity=0.223 Sum_probs=98.2
Q ss_pred ceEEEecCCCCCCCCCCCCCCCceEEECCCCCCcccc-cccCCCCCCcEEEccCCCCCCCCC-CCCCCCCCcEEeecCCC
Q 047943 18 LRYLHWYEYPLKTLPSNFEPENLLELNLPYSKIETIW-EVKKEAPKLKYINLHNSQYLTGMP-DLSETPNLERLNILNCT 95 (479)
Q Consensus 18 Lr~L~~~~~~l~~lp~~~~~~~L~~L~L~~s~i~~l~-~~~~~l~~L~~L~Ls~~~~l~~~p-~l~~l~~L~~L~L~~c~ 95 (479)
-+.+++++..++.+|..+ +++|++|++++++++.++ ..+..+++|+.|++++|......| .+.++++|++|++++|.
T Consensus 13 ~~~~~c~~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 91 (285)
T 1ozn_A 13 KVTTSCPQQGLQAVPVGI-PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91 (285)
T ss_dssp SCEEECCSSCCSSCCTTC-CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred CeEEEcCcCCcccCCcCC-CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCC
Confidence 467888888899998765 578999999999999876 468889999999999886544435 58888999999999876
Q ss_pred CCCCC-CccccccCCccccceeeccCCCceec-CccccCCCCCCEEeccCCCCCCCCCEEecCCCCCCCccchhhhcccc
Q 047943 96 NLAYI-PSCIHNFNNLRSVIGLCLRNTAIEEV-PSSIESLTKLEKLDLSYCTRLKGLCKLDLGYCSKFECFPEIIEKMER 173 (479)
Q Consensus 96 ~l~~~-p~~l~~l~~L~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~c~~L~~L~~L~L~~c~~l~~~p~~~~~l~~ 173 (479)
.+..+ |..+.. +++|++|++++|.+..+ |..++.+++|+.|++++ |......+..++++++
T Consensus 92 ~l~~~~~~~~~~---l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~--------------n~l~~~~~~~~~~l~~ 154 (285)
T 1ozn_A 92 QLRSVDPATFHG---LGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD--------------NALQALPDDTFRDLGN 154 (285)
T ss_dssp TCCCCCTTTTTT---CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCS--------------SCCCCCCTTTTTTCTT
T ss_pred CccccCHHHhcC---CcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCC--------------CcccccCHhHhccCCC
Confidence 45444 333333 33344466666666554 23344444444444443 2222222233455556
Q ss_pred CCeeeccCccccccC
Q 047943 174 LRSVDLQSTEVEELP 188 (479)
Q Consensus 174 L~~L~L~~~~i~~lp 188 (479)
|++|++++|.++++|
T Consensus 155 L~~L~l~~n~l~~~~ 169 (285)
T 1ozn_A 155 LTHLFLHGNRISSVP 169 (285)
T ss_dssp CCEEECCSSCCCEEC
T ss_pred ccEEECCCCcccccC
Confidence 666666665555443
No 56
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.86 E-value=4.5e-21 Score=187.01 Aligned_cols=234 Identities=18% Similarity=0.176 Sum_probs=165.2
Q ss_pred eEEECCCCCCcccccccCCCCCCcEEEccCCCCCCCCCC--CCCCCCCcEEeecCCCCCCC--CCccccccCCcccccee
Q 047943 41 LELNLPYSKIETIWEVKKEAPKLKYINLHNSQYLTGMPD--LSETPNLERLNILNCTNLAY--IPSCIHNFNNLRSVIGL 116 (479)
Q Consensus 41 ~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~--l~~l~~L~~L~L~~c~~l~~--~p~~l~~l~~L~~L~~L 116 (479)
+.++.+++.++.+|.++ .++|+.|++++|.. +.+|. +.++++|++|++++|..... .+..+. .+++|++|
T Consensus 10 ~~l~c~~~~l~~ip~~~--~~~l~~L~L~~n~l-~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~---~~~~L~~L 83 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGI--PSSATRLELESNKL-QSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDF---GTTSLKYL 83 (306)
T ss_dssp TEEECCSSCCSSCCSCC--CTTCCEEECCSSCC-CCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHH---SCSCCCEE
T ss_pred CEEEcCCCCcccCCCCC--CCCCCEEECCCCcc-CccCHhHhhccccCCEEECCCCccCcccCcccccc---cccccCEE
Confidence 47888899999998765 37999999999864 46663 78999999999999754311 133443 35667779
Q ss_pred eccCCCceecCccccCCCCCCEEeccCCCCCCCCCEEecCCCCCCCccc--hhhhccccCCeeeccCccccccCcccccc
Q 047943 117 CLRNTAIEEVPSSIESLTKLEKLDLSYCTRLKGLCKLDLGYCSKFECFP--EIIEKMERLRSVDLQSTEVEELPSSMENL 194 (479)
Q Consensus 117 ~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~L~~L~~L~L~~c~~l~~~p--~~~~~l~~L~~L~L~~~~i~~lp~~i~~l 194 (479)
++++|.+..+|..+..+++|+.|+++++ .+..++ ..+..+++|++|++++|.+..++
T Consensus 84 ~Ls~n~i~~l~~~~~~l~~L~~L~l~~n---------------~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~------ 142 (306)
T 2z66_A 84 DLSFNGVITMSSNFLGLEQLEHLDFQHS---------------NLKQMSEFSVFLSLRNLIYLDISHTHTRVAF------ 142 (306)
T ss_dssp ECCSCSEEEEEEEEETCTTCCEEECTTS---------------EEESSTTTTTTTTCTTCCEEECTTSCCEECS------
T ss_pred ECCCCccccChhhcCCCCCCCEEECCCC---------------cccccccchhhhhccCCCEEECCCCcCCccc------
Confidence 9999999999988888888888888763 222333 36778899999999999888643
Q ss_pred cCCCCCCCCCCCCCCCCeeecCCC--------ccccccCCCceeecCCCCCCCC-CcccCCCCCCCEEEcCCCCCccCC-
Q 047943 195 EGLKDLPDSLPNLKSLQFLNVERL--------FSIADLDKLEDLSISGRRGLIL-PPLLSGLSSLTKLVLTCCDVIEIP- 264 (479)
Q Consensus 195 ~~L~~lp~~l~~l~~L~~L~l~~l--------~~l~~l~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~L~~~~l~~lp- 264 (479)
+..+..+++|++|++++. ..+..+++|++|++++|....+ |..+..+++|++|++++|.+.+++
T Consensus 143 ------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 216 (306)
T 2z66_A 143 ------NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDT 216 (306)
T ss_dssp ------TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCS
T ss_pred ------hhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccCh
Confidence 234555677777777761 2355667777777777764433 555666777777777777777643
Q ss_pred ccCCCCCCCCEEeCCCCcCCccChhhhcCCC-chhHHHHHhhhhhh
Q 047943 265 QDIGCLSSLELLFLCGNNFSKFTCKYQSTFT-AEKTLLELLQYATV 309 (479)
Q Consensus 265 ~~l~~l~~L~~L~Ls~n~l~~lp~~~i~~l~-~L~~L~~~L~~n~~ 309 (479)
..+..+++|+.|++++|.++..+...+..++ +|++| ++++|.+
T Consensus 217 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L--~L~~N~~ 260 (306)
T 2z66_A 217 FPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFL--NLTQNDF 260 (306)
T ss_dssp GGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEE--ECTTCCE
T ss_pred hhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEE--EccCCCe
Confidence 3566677777777777776654325566663 67777 6666554
No 57
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.86 E-value=4.1e-20 Score=196.69 Aligned_cols=233 Identities=24% Similarity=0.269 Sum_probs=193.2
Q ss_pred CccCceEEEecCCCCCCCCCCCCCCCceEEECCCCCCcccccccCCCCCCcEEEccCCCCCCCCCCCCCCCCCcEEeecC
Q 047943 14 LPEELRYLHWYEYPLKTLPSNFEPENLLELNLPYSKIETIWEVKKEAPKLKYINLHNSQYLTGMPDLSETPNLERLNILN 93 (479)
Q Consensus 14 l~~~Lr~L~~~~~~l~~lp~~~~~~~L~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~ 93 (479)
++++|++|++++|.++.+|. .+++|++|+|++|+++.+|. .+++|+.|++++|. ++.+|. .+++|++|++++
T Consensus 59 l~~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~-l~~l~~--~l~~L~~L~L~~ 130 (622)
T 3g06_A 59 LPAHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNP-LTHLPA--LPSGLCKLWIFG 130 (622)
T ss_dssp CCTTCSEEEECSCCCSCCCC--CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCC-CCCCCC--CCTTCCEEECCS
T ss_pred hCCCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCc-CCCCCC--CCCCcCEEECCC
Confidence 44689999999999999998 67999999999999999887 78999999999985 555665 678999999999
Q ss_pred CCCCCCCCccccccCCccccceeeccCCCceecCccccCCCCCCEEeccCCC------CCCCCCEEecCCCCCCCccchh
Q 047943 94 CTNLAYIPSCIHNFNNLRSVIGLCLRNTAIEEVPSSIESLTKLEKLDLSYCT------RLKGLCKLDLGYCSKFECFPEI 167 (479)
Q Consensus 94 c~~l~~~p~~l~~l~~L~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~------~L~~L~~L~L~~c~~l~~~p~~ 167 (479)
|. +..+|.. +++|+.|++++|.+..+|.. +.+|+.|+++++. .+++|+.|++++|.. ..+|..
T Consensus 131 N~-l~~lp~~------l~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l-~~l~~~ 199 (622)
T 3g06_A 131 NQ-LTSLPVL------PPGLQELSVSDNQLASLPAL---PSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQL-ASLPTL 199 (622)
T ss_dssp SC-CSCCCCC------CTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCC-SCCCCC
T ss_pred CC-CCcCCCC------CCCCCEEECcCCcCCCcCCc---cCCCCEEECCCCCCCCCcccCCCCcEEECCCCCC-CCCCCc
Confidence 75 5566664 36678899999999988863 5688899988863 347899999999764 446653
Q ss_pred hhccccCCeeeccCccccccCcccccccCCCCCCCCCCCCCCCCeeecCC--Cccc-cccCCCceeecCCCCCCCCCccc
Q 047943 168 IEKMERLRSVDLQSTEVEELPSSMENLEGLKDLPDSLPNLKSLQFLNVER--LFSI-ADLDKLEDLSISGRRGLILPPLL 244 (479)
Q Consensus 168 ~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~lp~~l~~l~~L~~L~l~~--l~~l-~~l~~L~~L~l~~~~~~~lp~~~ 244 (479)
+++|+.|++++|.+..+|.. +++|+.|++++ +..+ ..+++|+.|++++|....+|.
T Consensus 200 ---~~~L~~L~L~~N~l~~l~~~----------------~~~L~~L~Ls~N~L~~lp~~l~~L~~L~Ls~N~L~~lp~-- 258 (622)
T 3g06_A 200 ---PSELYKLWAYNNRLTSLPAL----------------PSGLKELIVSGNRLTSLPVLPSELKELMVSGNRLTSLPM-- 258 (622)
T ss_dssp ---CTTCCEEECCSSCCSSCCCC----------------CTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCC--
T ss_pred ---cchhhEEECcCCcccccCCC----------------CCCCCEEEccCCccCcCCCCCCcCcEEECCCCCCCcCCc--
Confidence 46899999999999887742 25678888877 3333 456899999999999888887
Q ss_pred CCCCCCCEEEcCCCCCccCCccCCCCCCCCEEeCCCCcCCccC
Q 047943 245 SGLSSLTKLVLTCCDVIEIPQDIGCLSSLELLFLCGNNFSKFT 287 (479)
Q Consensus 245 ~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp 287 (479)
.+++|+.|++++|.+..+|..+..+++|+.|+|++|.++..+
T Consensus 259 -~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~l~~~~ 300 (622)
T 3g06_A 259 -LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERT 300 (622)
T ss_dssp -CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECCSCCCCHHH
T ss_pred -ccccCcEEeCCCCCCCcCCHHHhhccccCEEEecCCCCCCcC
Confidence 578999999999999999999999999999999999988544
No 58
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.85 E-value=8.9e-23 Score=199.91 Aligned_cols=245 Identities=18% Similarity=0.175 Sum_probs=174.8
Q ss_pred CceEEEecCCCCCCCCCCCCCCCceEEECCCCCCcc--cccccC-------CCCCCcEEEccCCCCCCCCCC-C--CCCC
Q 047943 17 ELRYLHWYEYPLKTLPSNFEPENLLELNLPYSKIET--IWEVKK-------EAPKLKYINLHNSQYLTGMPD-L--SETP 84 (479)
Q Consensus 17 ~Lr~L~~~~~~l~~lp~~~~~~~L~~L~L~~s~i~~--l~~~~~-------~l~~L~~L~Ls~~~~l~~~p~-l--~~l~ 84 (479)
+|+.|++.++.+ .+|..+. ..|++|+|++++++. ++..+. .+++|+.|++++|.....+|. + ..++
T Consensus 44 ~L~~l~l~~n~l-~~p~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~ 121 (312)
T 1wwl_A 44 SLEYLLKRVDTE-ADLGQFT-DIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGP 121 (312)
T ss_dssp ECTTHHHHCCTT-CCCHHHH-HHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSC
T ss_pred CceeEeeccccc-ccHHHHH-HHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCC
Confidence 577777888888 7777551 128999999998864 555444 789999999999987767773 4 8899
Q ss_pred CCcEEeecCCCCCCCCCccccccCCc--cccceeeccCCCceecC-ccccCCCCCCEEeccCCCCCCCCCEEecCCCCCC
Q 047943 85 NLERLNILNCTNLAYIPSCIHNFNNL--RSVIGLCLRNTAIEEVP-SSIESLTKLEKLDLSYCTRLKGLCKLDLGYCSKF 161 (479)
Q Consensus 85 ~L~~L~L~~c~~l~~~p~~l~~l~~L--~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~c~~L~~L~~L~L~~c~~l 161 (479)
+|++|++++|..... |..++.+... ++|++|++++|.+..++ ..++.+++|+.|++++ |...
T Consensus 122 ~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~--------------N~l~ 186 (312)
T 1wwl_A 122 DLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSD--------------NPEL 186 (312)
T ss_dssp CCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCS--------------CTTC
T ss_pred CccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCC--------------CCcC
Confidence 999999999765444 7777766333 66778999999998776 5677777777776665 3433
Q ss_pred Cc--cchhh--hccccCCeeeccCccccccCcccccccCCCCCCCCCCCCCCCCeeecCCCccccccCCCceeecCCCCC
Q 047943 162 EC--FPEII--EKMERLRSVDLQSTEVEELPSSMENLEGLKDLPDSLPNLKSLQFLNVERLFSIADLDKLEDLSISGRRG 237 (479)
Q Consensus 162 ~~--~p~~~--~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~lp~~l~~l~~L~~L~l~~l~~l~~l~~L~~L~l~~~~~ 237 (479)
+. +|..+ +++++|++|++++|.+++++..... .+..+++|++|++++|..
T Consensus 187 ~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~--------------------------~~~~l~~L~~L~Ls~N~l 240 (312)
T 1wwl_A 187 GERGLISALCPLKFPTLQVLALRNAGMETPSGVCSA--------------------------LAAARVQLQGLDLSHNSL 240 (312)
T ss_dssp HHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHH--------------------------HHHTTCCCSEEECTTSCC
T ss_pred cchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHH--------------------------HHhcCCCCCEEECCCCcC
Confidence 32 23333 6778888888888877754321111 012345666667777775
Q ss_pred CCCC--cccCCCCCCCEEEcCCCCCccCCccCCCCCCCCEEeCCCCcCCccChhhhcCCCchhHHHHHhhhhhhh
Q 047943 238 LILP--PLLSGLSSLTKLVLTCCDVIEIPQDIGCLSSLELLFLCGNNFSKFTCKYQSTFTAEKTLLELLQYATVI 310 (479)
Q Consensus 238 ~~lp--~~~~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~~i~~l~~L~~L~~~L~~n~~~ 310 (479)
...+ ..+..+++|++|++++|.++++|..+. ++|++|++++|+++.+| . +..+++|++| ++++|.+.
T Consensus 241 ~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l~~~p-~-~~~l~~L~~L--~L~~N~l~ 309 (312)
T 1wwl_A 241 RDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNRLDRNP-S-PDELPQVGNL--SLKGNPFL 309 (312)
T ss_dssp CSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC--SEEEEEECCSSCCCSCC-C-TTTSCEEEEE--ECTTCTTT
T ss_pred CcccchhhhhhcCCCCEEECCCCccChhhhhcc--CCceEEECCCCCCCCCh-h-HhhCCCCCEE--eccCCCCC
Confidence 4433 335567888888888888888887776 78888888888888888 4 8888888888 88877664
No 59
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.85 E-value=4e-21 Score=191.34 Aligned_cols=243 Identities=18% Similarity=0.238 Sum_probs=179.9
Q ss_pred CCccCceEEEecCCCCCCCCC-CC-CCCCceEEECCCCCCcccc-cccCCCCCCcEEEccCCCCCCCCC-C-CCCCCCCc
Q 047943 13 YLPEELRYLHWYEYPLKTLPS-NF-EPENLLELNLPYSKIETIW-EVKKEAPKLKYINLHNSQYLTGMP-D-LSETPNLE 87 (479)
Q Consensus 13 ~l~~~Lr~L~~~~~~l~~lp~-~~-~~~~L~~L~L~~s~i~~l~-~~~~~l~~L~~L~Ls~~~~l~~~p-~-l~~l~~L~ 87 (479)
.++++|+.|+++++.++.+|. .| .+++|++|++++|+++.++ ..+..+++|+.|++++|.. +.+| . +.++++|+
T Consensus 49 ~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~ 127 (353)
T 2z80_A 49 GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL-SNLSSSWFKPLSSLT 127 (353)
T ss_dssp TCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC-SSCCHHHHTTCTTCS
T ss_pred cccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcC-CcCCHhHhCCCccCC
Confidence 345689999999999999987 45 8999999999999999874 5689999999999999864 4555 3 89999999
Q ss_pred EEeecCCCCCCCCCc--cccccCCccccceeeccCC-CceecC-ccccCCCCCCEEeccCCC----------CCCCCCEE
Q 047943 88 RLNILNCTNLAYIPS--CIHNFNNLRSVIGLCLRNT-AIEEVP-SSIESLTKLEKLDLSYCT----------RLKGLCKL 153 (479)
Q Consensus 88 ~L~L~~c~~l~~~p~--~l~~l~~L~~L~~L~L~~~-~i~~lp-~~i~~l~~L~~L~L~~c~----------~L~~L~~L 153 (479)
+|++++|.. ..+|. .+. ++++|++|++++| .+..++ ..++.+++|+.|+++++. ++++|++|
T Consensus 128 ~L~L~~n~l-~~l~~~~~~~---~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 203 (353)
T 2z80_A 128 FLNLLGNPY-KTLGETSLFS---HLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHL 203 (353)
T ss_dssp EEECTTCCC-SSSCSSCSCT---TCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEE
T ss_pred EEECCCCCC-cccCchhhhc---cCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCee
Confidence 999999754 45554 444 4556677999998 477764 568888999999887752 45566777
Q ss_pred ecCCCCCCCccch-hhhccccCCeeeccCccccccCcccccccCCCCCCCCCCCCCCCCeeecCCCccccccCCCceeec
Q 047943 154 DLGYCSKFECFPE-IIEKMERLRSVDLQSTEVEELPSSMENLEGLKDLPDSLPNLKSLQFLNVERLFSIADLDKLEDLSI 232 (479)
Q Consensus 154 ~L~~c~~l~~~p~-~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~lp~~l~~l~~L~~L~l~~l~~l~~l~~L~~L~l 232 (479)
++++|.. ..+|. .+..+++|++|++++|.+.+++.. .+ ........++.+++
T Consensus 204 ~l~~n~l-~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~--~l------------------------~~~~~~~~l~~l~L 256 (353)
T 2z80_A 204 ILHMKQH-ILLLEIFVDVTSSVECLELRDTDLDTFHFS--EL------------------------STGETNSLIKKFTF 256 (353)
T ss_dssp EEECSCS-TTHHHHHHHHTTTEEEEEEESCBCTTCCCC--------------------------------CCCCCCEEEE
T ss_pred cCCCCcc-ccchhhhhhhcccccEEECCCCcccccccc--cc------------------------ccccccchhhcccc
Confidence 7777654 44443 344567777777777777664321 00 01112334444555
Q ss_pred CCCC-----CCCCCcccCCCCCCCEEEcCCCCCccCCccC-CCCCCCCEEeCCCCcCCccC
Q 047943 233 SGRR-----GLILPPLLSGLSSLTKLVLTCCDVIEIPQDI-GCLSSLELLFLCGNNFSKFT 287 (479)
Q Consensus 233 ~~~~-----~~~lp~~~~~l~~L~~L~L~~~~l~~lp~~l-~~l~~L~~L~Ls~n~l~~lp 287 (479)
+++. ...+|..+..+++|+.|++++|.+.++|..+ +.+++|++|++++|+++..+
T Consensus 257 ~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~ 317 (353)
T 2z80_A 257 RNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 317 (353)
T ss_dssp ESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred ccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcC
Confidence 4444 2346777888999999999999999988875 89999999999999887544
No 60
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.85 E-value=6e-20 Score=188.45 Aligned_cols=229 Identities=20% Similarity=0.270 Sum_probs=173.2
Q ss_pred CccCCCccCceEEEecCCCCCCCCC-CC-CCCCceEEECCCCCCcccc-cccCCCCCCcEEEccCCCCCCCCC--CCCCC
Q 047943 9 QSLEYLPEELRYLHWYEYPLKTLPS-NF-EPENLLELNLPYSKIETIW-EVKKEAPKLKYINLHNSQYLTGMP--DLSET 83 (479)
Q Consensus 9 ~~~~~l~~~Lr~L~~~~~~l~~lp~-~~-~~~~L~~L~L~~s~i~~l~-~~~~~l~~L~~L~Ls~~~~l~~~p--~l~~l 83 (479)
..+..+|.+++.|+++++.++.++. .| .+++|++|+|++|+++.++ ..+..+++|+.|+|++|. ++.++ .+..+
T Consensus 57 ~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l 135 (440)
T 3zyj_A 57 EVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR-LTTIPNGAFVYL 135 (440)
T ss_dssp SCCSCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC-CSSCCTTTSCSC
T ss_pred cCCCCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc-CCeeCHhHhhcc
Confidence 3344556789999999999998874 45 8999999999999999876 678999999999999986 44555 48999
Q ss_pred CCCcEEeecCCCCCCCCCccccccCCccccceeeccC-CCceecCc-cccCCCCCCEEeccCCCCCCCCCEEecCCCCCC
Q 047943 84 PNLERLNILNCTNLAYIPSCIHNFNNLRSVIGLCLRN-TAIEEVPS-SIESLTKLEKLDLSYCTRLKGLCKLDLGYCSKF 161 (479)
Q Consensus 84 ~~L~~L~L~~c~~l~~~p~~l~~l~~L~~L~~L~L~~-~~i~~lp~-~i~~l~~L~~L~L~~c~~L~~L~~L~L~~c~~l 161 (479)
++|++|++++|......+..+. ++++|+.|++++ +.+..++. .+..+++|+.|++++| .+
T Consensus 136 ~~L~~L~L~~N~i~~~~~~~~~---~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n---------------~l 197 (440)
T 3zyj_A 136 SKLKELWLRNNPIESIPSYAFN---RIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC---------------NL 197 (440)
T ss_dssp SSCCEEECCSCCCCEECTTTTT---TCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTS---------------CC
T ss_pred ccCceeeCCCCcccccCHHHhh---hCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCC---------------cC
Confidence 9999999999764433333444 455566799998 45667665 4667777777777663 23
Q ss_pred CccchhhhccccCCeeeccCccccccCcccccccCCCCCCCCCCCCCCCCeeecCCCccccccCCCceeecCCCCCCC-C
Q 047943 162 ECFPEIIEKMERLRSVDLQSTEVEELPSSMENLEGLKDLPDSLPNLKSLQFLNVERLFSIADLDKLEDLSISGRRGLI-L 240 (479)
Q Consensus 162 ~~~p~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~lp~~l~~l~~L~~L~l~~l~~l~~l~~L~~L~l~~~~~~~-l 240 (479)
..+|. +..+++|++|++++|.+.+++. .. +.++++|+.|++++|.... .
T Consensus 198 ~~~~~-~~~l~~L~~L~Ls~N~l~~~~~------------~~-----------------~~~l~~L~~L~L~~n~l~~~~ 247 (440)
T 3zyj_A 198 REIPN-LTPLIKLDELDLSGNHLSAIRP------------GS-----------------FQGLMHLQKLWMIQSQIQVIE 247 (440)
T ss_dssp SSCCC-CTTCSSCCEEECTTSCCCEECT------------TT-----------------TTTCTTCCEEECTTCCCCEEC
T ss_pred ccccc-cCCCcccCEEECCCCccCccCh------------hh-----------------hccCccCCEEECCCCceeEEC
Confidence 34443 6778899999999998887642 12 2334556666666677433 4
Q ss_pred CcccCCCCCCCEEEcCCCCCccCC-ccCCCCCCCCEEeCCCCcCCcc
Q 047943 241 PPLLSGLSSLTKLVLTCCDVIEIP-QDIGCLSSLELLFLCGNNFSKF 286 (479)
Q Consensus 241 p~~~~~l~~L~~L~L~~~~l~~lp-~~l~~l~~L~~L~Ls~n~l~~l 286 (479)
+..+.++++|+.|+|++|.++++| ..+..+++|+.|+|++|++..-
T Consensus 248 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~Cd 294 (440)
T 3zyj_A 248 RNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCN 294 (440)
T ss_dssp TTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECS
T ss_pred hhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCC
Confidence 556788999999999999999955 4568899999999999987643
No 61
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.84 E-value=7.9e-20 Score=188.20 Aligned_cols=218 Identities=21% Similarity=0.252 Sum_probs=156.6
Q ss_pred cCCCccCceEEEecCCCCCCCCC-CC-CCCCceEEECCCCCCcccc-cccCCCCCCcEEEccCCCCCCCCCC-CCCCCCC
Q 047943 11 LEYLPEELRYLHWYEYPLKTLPS-NF-EPENLLELNLPYSKIETIW-EVKKEAPKLKYINLHNSQYLTGMPD-LSETPNL 86 (479)
Q Consensus 11 ~~~l~~~Lr~L~~~~~~l~~lp~-~~-~~~~L~~L~L~~s~i~~l~-~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~l~~L 86 (479)
+..+|.++++|+++++.++.++. .| .+++|++|+|++|+++.++ ..+..+++|+.|+|++|......+. +..+++|
T Consensus 70 P~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 149 (452)
T 3zyi_A 70 PQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKL 149 (452)
T ss_dssp CSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTC
T ss_pred CCCCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCC
Confidence 34456799999999999998854 56 8999999999999999876 6789999999999999875433343 8899999
Q ss_pred cEEeecCCCCCCCCC-ccccccCCccccceeeccC-CCceecCc-cccCCCCCCEEeccCCC--------CCCCCCEEec
Q 047943 87 ERLNILNCTNLAYIP-SCIHNFNNLRSVIGLCLRN-TAIEEVPS-SIESLTKLEKLDLSYCT--------RLKGLCKLDL 155 (479)
Q Consensus 87 ~~L~L~~c~~l~~~p-~~l~~l~~L~~L~~L~L~~-~~i~~lp~-~i~~l~~L~~L~L~~c~--------~L~~L~~L~L 155 (479)
++|++++|... .+| ..+. ++++|+.|++++ +.+..++. .+..+++|+.|++++|. .+++|+.|++
T Consensus 150 ~~L~L~~N~l~-~~~~~~~~---~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L 225 (452)
T 3zyi_A 150 RELWLRNNPIE-SIPSYAFN---RVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEM 225 (452)
T ss_dssp CEEECCSCCCC-EECTTTTT---TCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEEC
T ss_pred CEEECCCCCcc-eeCHhHHh---cCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccccccccccccEEEC
Confidence 99999997644 443 3444 455667799998 56677765 47778888888887752 3344455555
Q ss_pred CCCCCCCccchhhhccccCCeeeccCccccccCcccccccCCCCCCCCCCCCCCCCeeecCCCccccccCCCceeecCCC
Q 047943 156 GYCSKFECFPEIIEKMERLRSVDLQSTEVEELPSSMENLEGLKDLPDSLPNLKSLQFLNVERLFSIADLDKLEDLSISGR 235 (479)
Q Consensus 156 ~~c~~l~~~p~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~lp~~l~~l~~L~~L~l~~l~~l~~l~~L~~L~l~~~ 235 (479)
++|...+..|..+.++++|++|++++|.+..++. ..+.++++|+.|++++|
T Consensus 226 s~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-----------------------------~~~~~l~~L~~L~L~~N 276 (452)
T 3zyi_A 226 SGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIER-----------------------------NAFDGLASLVELNLAHN 276 (452)
T ss_dssp TTSCCSEECGGGGTTCTTCCEEECTTSCCCEECT-----------------------------TTTTTCTTCCEEECCSS
T ss_pred cCCcCcccCcccccCccCCCEEEeCCCcCceECH-----------------------------HHhcCCCCCCEEECCCC
Confidence 5544444444445555555555555554444321 23556778888888889
Q ss_pred CCCCCCc-ccCCCCCCCEEEcCCCCCc
Q 047943 236 RGLILPP-LLSGLSSLTKLVLTCCDVI 261 (479)
Q Consensus 236 ~~~~lp~-~~~~l~~L~~L~L~~~~l~ 261 (479)
....+|. .+..+++|+.|++++|.+.
T Consensus 277 ~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 277 NLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp CCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred cCCccChHHhccccCCCEEEccCCCcC
Confidence 8766664 4678999999999999764
No 62
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.84 E-value=7.3e-21 Score=197.71 Aligned_cols=233 Identities=20% Similarity=0.179 Sum_probs=174.1
Q ss_pred CCCCceEEECCCCCCcccc-cccCCCCCCcEEEccCCCCCCCCCCCCCCCCCcEEeecCCCCCCCCCccccccCCccccc
Q 047943 36 EPENLLELNLPYSKIETIW-EVKKEAPKLKYINLHNSQYLTGMPDLSETPNLERLNILNCTNLAYIPSCIHNFNNLRSVI 114 (479)
Q Consensus 36 ~~~~L~~L~L~~s~i~~l~-~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c~~l~~~p~~l~~l~~L~~L~ 114 (479)
.+++|++|+|++|.+..++ ..+..+++|+.|+|++|.... .+++..+++|++|++++|.. ..+| ..+.|+
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~l~~l~~L~~L~Ls~N~l-~~l~-------~~~~L~ 102 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE-TLDLESLSTLRTLDLNNNYV-QELL-------VGPSIE 102 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEE-EEECTTCTTCCEEECCSSEE-EEEE-------ECTTCC
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCC-CcccccCCCCCEEEecCCcC-CCCC-------CCCCcC
Confidence 3448888888888888764 678888888888888876433 33488888888888888642 2222 225667
Q ss_pred eeeccCCCceecCccccCCCCCCEEeccCCCCCCCCCEEecCCCCCCCccchhhhccccCCeeeccCcccccc-Cccccc
Q 047943 115 GLCLRNTAIEEVPSSIESLTKLEKLDLSYCTRLKGLCKLDLGYCSKFECFPEIIEKMERLRSVDLQSTEVEEL-PSSMEN 193 (479)
Q Consensus 115 ~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~L~~L~~L~L~~c~~l~~~p~~~~~l~~L~~L~L~~~~i~~l-p~~i~~ 193 (479)
.|++++|.+..++.. .+ ++|+.|++++|...+..|..++.+++|++|++++|.+.++ |..+.
T Consensus 103 ~L~L~~N~l~~~~~~--~l--------------~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~- 165 (487)
T 3oja_A 103 TLHAANNNISRVSCS--RG--------------QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELA- 165 (487)
T ss_dssp EEECCSSCCCCEEEC--CC--------------SSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGG-
T ss_pred EEECcCCcCCCCCcc--cc--------------CCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHh-
Confidence 788888877766532 23 4455555555665555666777788888888888887763 33222
Q ss_pred ccCCCCCCCCCCCCCCCCeeecCC-----CccccccCCCceeecCCCCCCCCCcccCCCCCCCEEEcCCCCCccCCccCC
Q 047943 194 LEGLKDLPDSLPNLKSLQFLNVER-----LFSIADLDKLEDLSISGRRGLILPPLLSGLSSLTKLVLTCCDVIEIPQDIG 268 (479)
Q Consensus 194 l~~L~~lp~~l~~l~~L~~L~l~~-----l~~l~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~lp~~l~ 268 (479)
..+++|+.|++++ .+....+++|+.|++++|....+|..+..+++|+.|++++|.+.++|..++
T Consensus 166 -----------~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~ 234 (487)
T 3oja_A 166 -----------ASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALR 234 (487)
T ss_dssp -----------GGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCC
T ss_pred -----------hhCCcccEEecCCCccccccccccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcccchhhc
Confidence 1356677777776 234456889999999999988888888899999999999999999999999
Q ss_pred CCCCCCEEeCCCCcCC--ccChhhhcCCCchhHHHHHhhhhh
Q 047943 269 CLSSLELLFLCGNNFS--KFTCKYQSTFTAEKTLLELLQYAT 308 (479)
Q Consensus 269 ~l~~L~~L~Ls~n~l~--~lp~~~i~~l~~L~~L~~~L~~n~ 308 (479)
.+++|+.|++++|.+. .+| ..+..++.|+.+ ++..+.
T Consensus 235 ~l~~L~~L~l~~N~l~c~~~~-~~~~~l~~L~~l--~~~~~~ 273 (487)
T 3oja_A 235 FSQNLEHFDLRGNGFHCGTLR-DFFSKNQRVQTV--AKQTVK 273 (487)
T ss_dssp CCTTCCEEECTTCCBCHHHHH-HHHTTCHHHHHH--HHHHHH
T ss_pred cCCCCCEEEcCCCCCcCcchH-HHHHhCCCCcEE--eccccc
Confidence 9999999999999988 777 788899999999 776443
No 63
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.84 E-value=4.3e-20 Score=178.17 Aligned_cols=204 Identities=20% Similarity=0.275 Sum_probs=158.7
Q ss_pred CCccCceEEEecCCCCCCCCCC-C-CCCCceEEECCCCCCccc-ccccCCCCCCcEEEccCCCCCCCC-C-CCCCCCCCc
Q 047943 13 YLPEELRYLHWYEYPLKTLPSN-F-EPENLLELNLPYSKIETI-WEVKKEAPKLKYINLHNSQYLTGM-P-DLSETPNLE 87 (479)
Q Consensus 13 ~l~~~Lr~L~~~~~~l~~lp~~-~-~~~~L~~L~L~~s~i~~l-~~~~~~l~~L~~L~Ls~~~~l~~~-p-~l~~l~~L~ 87 (479)
.+|.+|+.|+++++.++.+|.. | .+++|++|++++|.++.+ +..+..+++|+.|++++|..++.+ | .+..+++|+
T Consensus 29 ~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~ 108 (285)
T 1ozn_A 29 GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLH 108 (285)
T ss_dssp TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCC
T ss_pred CCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCC
Confidence 3567999999999999999864 5 899999999999999987 678999999999999999866666 4 589999999
Q ss_pred EEeecCCCCCCCCCccccccCCccccceeeccCCCceecCcc-ccCCCCCCEEeccCCCCCCCCCEEecCCCCCCCccc-
Q 047943 88 RLNILNCTNLAYIPSCIHNFNNLRSVIGLCLRNTAIEEVPSS-IESLTKLEKLDLSYCTRLKGLCKLDLGYCSKFECFP- 165 (479)
Q Consensus 88 ~L~L~~c~~l~~~p~~l~~l~~L~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~c~~L~~L~~L~L~~c~~l~~~p- 165 (479)
+|++++|......|..+.+ ++.|++|++++|.+..++.. ++.+++|+.|++++ |. +..+|
T Consensus 109 ~L~l~~n~l~~~~~~~~~~---l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~--------------n~-l~~~~~ 170 (285)
T 1ozn_A 109 TLHLDRCGLQELGPGLFRG---LAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHG--------------NR-ISSVPE 170 (285)
T ss_dssp EEECTTSCCCCCCTTTTTT---CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS--------------SC-CCEECT
T ss_pred EEECCCCcCCEECHhHhhC---CcCCCEEECCCCcccccCHhHhccCCCccEEECCC--------------Cc-ccccCH
Confidence 9999998765555555554 45566799999999988754 66777777777665 33 33334
Q ss_pred hhhhccccCCeeeccCccccccCcccccccCCCCCCCCCCCCCCCCeeecCCCccccccCCCceeecCCCCCCCCCcccC
Q 047943 166 EIIEKMERLRSVDLQSTEVEELPSSMENLEGLKDLPDSLPNLKSLQFLNVERLFSIADLDKLEDLSISGRRGLILPPLLS 245 (479)
Q Consensus 166 ~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~lp~~l~~l~~L~~L~l~~l~~l~~l~~L~~L~l~~~~~~~lp~~~~ 245 (479)
..+..+++|++|++++|.+.+++ |..+.
T Consensus 171 ~~~~~l~~L~~L~l~~n~l~~~~----------------------------------------------------~~~~~ 198 (285)
T 1ozn_A 171 RAFRGLHSLDRLLLHQNRVAHVH----------------------------------------------------PHAFR 198 (285)
T ss_dssp TTTTTCTTCCEEECCSSCCCEEC----------------------------------------------------TTTTT
T ss_pred HHhcCccccCEEECCCCcccccC----------------------------------------------------HhHcc
Confidence 45777888999999888776542 22345
Q ss_pred CCCCCCEEEcCCCCCccCC-ccCCCCCCCCEEeCCCCcCCcc
Q 047943 246 GLSSLTKLVLTCCDVIEIP-QDIGCLSSLELLFLCGNNFSKF 286 (479)
Q Consensus 246 ~l~~L~~L~L~~~~l~~lp-~~l~~l~~L~~L~Ls~n~l~~l 286 (479)
.+++|+.|++++|.+.+++ ..+..+++|+.|++++|++...
T Consensus 199 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 240 (285)
T 1ozn_A 199 DLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCD 240 (285)
T ss_dssp TCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECS
T ss_pred CcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCC
Confidence 5678888888888888855 4478888888888888887643
No 64
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.83 E-value=5.1e-23 Score=212.20 Aligned_cols=295 Identities=17% Similarity=0.165 Sum_probs=172.8
Q ss_pred cCCCccCceEEEecCCCCC-----CCCCCC-CCCCceEEECCCCCCccc--ccccCCCC----CCcEEEccCCCCCC---
Q 047943 11 LEYLPEELRYLHWYEYPLK-----TLPSNF-EPENLLELNLPYSKIETI--WEVKKEAP----KLKYINLHNSQYLT--- 75 (479)
Q Consensus 11 ~~~l~~~Lr~L~~~~~~l~-----~lp~~~-~~~~L~~L~L~~s~i~~l--~~~~~~l~----~L~~L~Ls~~~~l~--- 75 (479)
+..++ +|+.|++++|.++ .++..+ .+++|++|++++|.+... ......++ +|+.|++++|....
T Consensus 24 ~~~~~-~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~ 102 (461)
T 1z7x_W 24 LPLLQ-QCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGC 102 (461)
T ss_dssp HHHHT-TCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGH
T ss_pred HhhcC-CccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHH
Confidence 34455 7888888888876 445555 678888888888887642 11222333 68888888886432
Q ss_pred -CCC-CCCCCCCCcEEeecCCCCCCCCCccccc--cCCccccceeeccCCCcee-----cCccccCCCCCCEEeccCCC-
Q 047943 76 -GMP-DLSETPNLERLNILNCTNLAYIPSCIHN--FNNLRSVIGLCLRNTAIEE-----VPSSIESLTKLEKLDLSYCT- 145 (479)
Q Consensus 76 -~~p-~l~~l~~L~~L~L~~c~~l~~~p~~l~~--l~~L~~L~~L~L~~~~i~~-----lp~~i~~l~~L~~L~L~~c~- 145 (479)
.++ .+..+++|++|++++|......+..+.. .....+|++|++++|.+.. ++..+..+++|+.|++++|.
T Consensus 103 ~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i 182 (461)
T 1z7x_W 103 GVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI 182 (461)
T ss_dssp HHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBC
T ss_pred HHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCc
Confidence 224 4778888888888887643222222222 2224467778898888763 45667778899999998864
Q ss_pred --------------CCCCCCEEecCCCCCCCc----cchhhhccccCCeeeccCcccccc-----Ccc-cccccCCCC--
Q 047943 146 --------------RLKGLCKLDLGYCSKFEC----FPEIIEKMERLRSVDLQSTEVEEL-----PSS-MENLEGLKD-- 199 (479)
Q Consensus 146 --------------~L~~L~~L~L~~c~~l~~----~p~~~~~l~~L~~L~L~~~~i~~l-----p~~-i~~l~~L~~-- 199 (479)
..++|++|++++|..... ++..+..+++|++|++++|.+.+. ... ...+++|+.
T Consensus 183 ~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~ 262 (461)
T 1z7x_W 183 NEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLW 262 (461)
T ss_dssp HHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEE
T ss_pred chHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEE
Confidence 245889999999866543 577788888999999999887652 111 112333332
Q ss_pred -------------CCCCCCCCCCCCeeecCCC-------ccccc-----cCCCceeecCCCCCCC-----CCcccCCCCC
Q 047943 200 -------------LPDSLPNLKSLQFLNVERL-------FSIAD-----LDKLEDLSISGRRGLI-----LPPLLSGLSS 249 (479)
Q Consensus 200 -------------lp~~l~~l~~L~~L~l~~l-------~~l~~-----l~~L~~L~l~~~~~~~-----lp~~~~~l~~ 249 (479)
++..+.++++|++|++++. ..+.. .++|++|++++|.... ++..+..+++
T Consensus 263 L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~ 342 (461)
T 1z7x_W 263 IWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRF 342 (461)
T ss_dssp CTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSS
T ss_pred CcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCC
Confidence 1222233455555555541 01111 1355555555554221 2333344455
Q ss_pred CCEEEcCCCCCcc-CCc----cCC-CCCCCCEEeCCCCcCC-----ccChhhhcCCCchhHHHHHhhhhhh
Q 047943 250 LTKLVLTCCDVIE-IPQ----DIG-CLSSLELLFLCGNNFS-----KFTCKYQSTFTAEKTLLELLQYATV 309 (479)
Q Consensus 250 L~~L~L~~~~l~~-lp~----~l~-~l~~L~~L~Ls~n~l~-----~lp~~~i~~l~~L~~L~~~L~~n~~ 309 (479)
|++|++++|.+.+ .+. .+. ..++|++|++++|.++ .+| ..+..+++|++| ++++|.+
T Consensus 343 L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~-~~l~~~~~L~~L--~l~~N~i 410 (461)
T 1z7x_W 343 LLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLA-ATLLANHSLREL--DLSNNCL 410 (461)
T ss_dssp CCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHH-HHHHHCCCCCEE--ECCSSSC
T ss_pred ccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHH-HHHHhCCCccEE--ECCCCCC
Confidence 5555555555544 111 111 1445556666655555 344 455555555555 5555544
No 65
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.82 E-value=5.4e-19 Score=169.62 Aligned_cols=221 Identities=18% Similarity=0.246 Sum_probs=150.1
Q ss_pred EEEecCCCCCCCCCCCCCCCceEEECCCCCCccccc-ccCCCCCCcEEEccCCCCCCCCC-CCCCCCCCcEEeecCCCCC
Q 047943 20 YLHWYEYPLKTLPSNFEPENLLELNLPYSKIETIWE-VKKEAPKLKYINLHNSQYLTGMP-DLSETPNLERLNILNCTNL 97 (479)
Q Consensus 20 ~L~~~~~~l~~lp~~~~~~~L~~L~L~~s~i~~l~~-~~~~l~~L~~L~Ls~~~~l~~~p-~l~~l~~L~~L~L~~c~~l 97 (479)
.++..+..+..+|..+ +++|++|++++++++.++. .+..+++|+.|++++|......+ .+.++++|++|++++|...
T Consensus 11 ~~~c~~~~l~~ip~~l-~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 89 (276)
T 2z62_A 11 TYQCMELNFYKIPDNL-PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89 (276)
T ss_dssp EEECTTSCCSSCCSSS-CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred eEEecCCCccccCCCC-CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccC
Confidence 4555666677777755 3578888888888887764 67788888888888875433333 4778888888888887654
Q ss_pred CCCCccccccCCccccceeeccCCCceecCc-cccCCCCCCEEeccCCCCCCCCCEEecCCCCCCC-ccchhhhccccCC
Q 047943 98 AYIPSCIHNFNNLRSVIGLCLRNTAIEEVPS-SIESLTKLEKLDLSYCTRLKGLCKLDLGYCSKFE-CFPEIIEKMERLR 175 (479)
Q Consensus 98 ~~~p~~l~~l~~L~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~c~~L~~L~~L~L~~c~~l~-~~p~~~~~l~~L~ 175 (479)
...+..+.+ +++|++|++++|.+..++. .++.+++|+.|++++ |.... .+|..++++++|+
T Consensus 90 ~~~~~~~~~---l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~--------------n~l~~~~l~~~~~~l~~L~ 152 (276)
T 2z62_A 90 SLALGAFSG---LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH--------------NLIQSFKLPEYFSNLTNLE 152 (276)
T ss_dssp EECTTTTTT---CTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCS--------------SCCCCCCCCGGGGGCTTCC
T ss_pred ccChhhhcC---CccccEEECCCCCccccCchhcccCCCCCEEECcC--------------CccceecCchhhccCCCCC
Confidence 433344444 4445557888887776654 455555555555554 34333 3678888899999
Q ss_pred eeeccCccccccCc-ccccccCCCCCCCCCCCCCCCCeeecCCCccccccCCCc-eeecCCCCCCCCCcccCCCCCCCEE
Q 047943 176 SVDLQSTEVEELPS-SMENLEGLKDLPDSLPNLKSLQFLNVERLFSIADLDKLE-DLSISGRRGLILPPLLSGLSSLTKL 253 (479)
Q Consensus 176 ~L~L~~~~i~~lp~-~i~~l~~L~~lp~~l~~l~~L~~L~l~~l~~l~~l~~L~-~L~l~~~~~~~lp~~~~~l~~L~~L 253 (479)
+|++++|.+++++. .+..+.+| +.|. .|++++|....++.......+|+.|
T Consensus 153 ~L~Ls~N~l~~~~~~~~~~l~~L---------------------------~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L 205 (276)
T 2z62_A 153 HLDLSSNKIQSIYCTDLRVLHQM---------------------------PLLNLSLDLSLNPMNFIQPGAFKEIRLKEL 205 (276)
T ss_dssp EEECCSSCCCEECGGGGHHHHTC---------------------------TTCCEEEECCSSCCCEECTTSSCSCCEEEE
T ss_pred EEECCCCCCCcCCHHHhhhhhhc---------------------------cccceeeecCCCcccccCccccCCCcccEE
Confidence 99999998887653 33333321 2222 5666777766665555555688999
Q ss_pred EcCCCCCccCCcc-CCCCCCCCEEeCCCCcCCc
Q 047943 254 VLTCCDVIEIPQD-IGCLSSLELLFLCGNNFSK 285 (479)
Q Consensus 254 ~L~~~~l~~lp~~-l~~l~~L~~L~Ls~n~l~~ 285 (479)
++++|.+.++|.. +..+++|+.|++++|+++.
T Consensus 206 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 206 ALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp ECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred ECCCCceeecCHhHhcccccccEEEccCCcccc
Confidence 9999988886654 5788899999999987763
No 66
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.81 E-value=1e-21 Score=192.72 Aligned_cols=228 Identities=14% Similarity=0.111 Sum_probs=175.6
Q ss_pred cCceEEEecCCCCCCCCC-CC-CCCCceEEECCCCCCcccccccCCCCCCcEEEccCCCCCCCCCCCCCCCCCcEEeecC
Q 047943 16 EELRYLHWYEYPLKTLPS-NF-EPENLLELNLPYSKIETIWEVKKEAPKLKYINLHNSQYLTGMPDLSETPNLERLNILN 93 (479)
Q Consensus 16 ~~Lr~L~~~~~~l~~lp~-~~-~~~~L~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~ 93 (479)
++|+.|+++++.++.++. .| .+++|++|+|++|++..++. +..+++|+.|++++|. ++.++ ..++|++|++++
T Consensus 34 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~-l~~l~---~~~~L~~L~l~~ 108 (317)
T 3o53_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY-VQELL---VGPSIETLHAAN 108 (317)
T ss_dssp GGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSE-EEEEE---ECTTCCEEECCS
T ss_pred CCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCc-ccccc---CCCCcCEEECCC
Confidence 489999999999998874 45 89999999999999987765 8999999999999985 33333 348999999999
Q ss_pred CCCCCCCCccccccCCccccceeeccCCCceecCc-cccCCCCCCEEeccCCCCCCCCCEEecCCCCCCCccchhh-hcc
Q 047943 94 CTNLAYIPSCIHNFNNLRSVIGLCLRNTAIEEVPS-SIESLTKLEKLDLSYCTRLKGLCKLDLGYCSKFECFPEII-EKM 171 (479)
Q Consensus 94 c~~l~~~p~~l~~l~~L~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~c~~L~~L~~L~L~~c~~l~~~p~~~-~~l 171 (479)
|......+. .++.|+.|++++|.+..+++ .++.+++|+.|+++++ ......+..+ ..+
T Consensus 109 n~l~~~~~~------~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N--------------~l~~~~~~~~~~~l 168 (317)
T 3o53_A 109 NNISRVSCS------RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN--------------EIDTVNFAELAASS 168 (317)
T ss_dssp SCCSEEEEC------CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTS--------------CCCEEEGGGGGGGT
T ss_pred CccCCcCcc------ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCC--------------CCCcccHHHHhhcc
Confidence 765432222 24568889999999998754 6777788887777763 3322223333 456
Q ss_pred ccCCeeeccCccccccCcccccccCCCCCCCCCCCCCCCCeeecCC--C----ccccccCCCceeecCCCCCCCCCcccC
Q 047943 172 ERLRSVDLQSTEVEELPSSMENLEGLKDLPDSLPNLKSLQFLNVER--L----FSIADLDKLEDLSISGRRGLILPPLLS 245 (479)
Q Consensus 172 ~~L~~L~L~~~~i~~lp~~i~~l~~L~~lp~~l~~l~~L~~L~l~~--l----~~l~~l~~L~~L~l~~~~~~~lp~~~~ 245 (479)
++|++|++++|.+++++.. ..+++|++|++++ + ..+..+++|+.|++++|....+|..+.
T Consensus 169 ~~L~~L~L~~N~l~~~~~~--------------~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~ 234 (317)
T 3o53_A 169 DTLEHLNLQYNFIYDVKGQ--------------VVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALR 234 (317)
T ss_dssp TTCCEEECTTSCCCEEECC--------------CCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCC
T ss_pred CcCCEEECCCCcCcccccc--------------cccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccchhhHhh
Confidence 7777777777777665321 1256677777766 1 346678899999999999888898899
Q ss_pred CCCCCCEEEcCCCCCc-c-CCccCCCCCCCCEEeCCCCc
Q 047943 246 GLSSLTKLVLTCCDVI-E-IPQDIGCLSSLELLFLCGNN 282 (479)
Q Consensus 246 ~l~~L~~L~L~~~~l~-~-lp~~l~~l~~L~~L~Ls~n~ 282 (479)
.+++|+.|++++|.+. + +|..++.++.|+.|++++++
T Consensus 235 ~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~ 273 (317)
T 3o53_A 235 FSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK 273 (317)
T ss_dssp CCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred cCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCch
Confidence 9999999999999998 3 88888899999999888665
No 67
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.80 E-value=7.8e-19 Score=171.51 Aligned_cols=194 Identities=19% Similarity=0.287 Sum_probs=105.5
Q ss_pred CCCceEEECCCCCCcccccccCCCCCCcEEEccCCCCCCCCCCCCCCCCCcEEeecCCCCCCCCCccccccCCcccccee
Q 047943 37 PENLLELNLPYSKIETIWEVKKEAPKLKYINLHNSQYLTGMPDLSETPNLERLNILNCTNLAYIPSCIHNFNNLRSVIGL 116 (479)
Q Consensus 37 ~~~L~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c~~l~~~p~~l~~l~~L~~L~~L 116 (479)
+++|++|+++++.++.++ ++..+++|+.|++++|. +..++.+..+++|++|++++|. +..++ .+..+++|+.|
T Consensus 40 l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~-i~~~~~~~~l~~L~~L~L~~n~-l~~~~----~~~~l~~L~~L 112 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQ-ITDLAPLKNLTKITELELSGNP-LKNVS----AIAGLQSIKTL 112 (308)
T ss_dssp HHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSC-CCCCGGGTTCCSCCEEECCSCC-CSCCG----GGTTCTTCCEE
T ss_pred cCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCc-CCCChhHccCCCCCEEEccCCc-CCCch----hhcCCCCCCEE
Confidence 444555555555544443 34445555555555443 2233334455555555555543 22221 23334444445
Q ss_pred eccCCCceecCccccCCCCCCEEeccCCCCCCCCCEEecCCCCCCCccchhhhccccCCeeeccCccccccCcccccccC
Q 047943 117 CLRNTAIEEVPSSIESLTKLEKLDLSYCTRLKGLCKLDLGYCSKFECFPEIIEKMERLRSVDLQSTEVEELPSSMENLEG 196 (479)
Q Consensus 117 ~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~L~~L~~L~L~~c~~l~~~p~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~ 196 (479)
++++|.+..++. +..+++|+.|++++ |. +..++. ++.+++|++|++++|.+.+++.
T Consensus 113 ~l~~n~l~~~~~-l~~l~~L~~L~l~~--------------n~-l~~~~~-l~~l~~L~~L~l~~n~l~~~~~------- 168 (308)
T 1h6u_A 113 DLTSTQITDVTP-LAGLSNLQVLYLDL--------------NQ-ITNISP-LAGLTNLQYLSIGNAQVSDLTP------- 168 (308)
T ss_dssp ECTTSCCCCCGG-GTTCTTCCEEECCS--------------SC-CCCCGG-GGGCTTCCEEECCSSCCCCCGG-------
T ss_pred ECCCCCCCCchh-hcCCCCCCEEECCC--------------Cc-cCcCcc-ccCCCCccEEEccCCcCCCChh-------
Confidence 555555555543 55555555555554 22 223333 6667777777777776665442
Q ss_pred CCCCCCCCCCCCCCCeeecCCCccccccCCCceeecCCCCCCCCCcccCCCCCCCEEEcCCCCCccCCccCCCCCCCCEE
Q 047943 197 LKDLPDSLPNLKSLQFLNVERLFSIADLDKLEDLSISGRRGLILPPLLSGLSSLTKLVLTCCDVIEIPQDIGCLSSLELL 276 (479)
Q Consensus 197 L~~lp~~l~~l~~L~~L~l~~l~~l~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L 276 (479)
+..+++|+.|++++|....++. +..+++|+.|++++|.+.+++. +..+++|+.|
T Consensus 169 ------------------------l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L 222 (308)
T 1h6u_A 169 ------------------------LANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVSP-LANTSNLFIV 222 (308)
T ss_dssp ------------------------GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEE
T ss_pred ------------------------hcCCCCCCEEECCCCccCcChh-hcCCCCCCEEEccCCccCcccc-ccCCCCCCEE
Confidence 1223344455555555544444 5566777777777777777653 6777777777
Q ss_pred eCCCCcCCccC
Q 047943 277 FLCGNNFSKFT 287 (479)
Q Consensus 277 ~Ls~n~l~~lp 287 (479)
++++|.++..|
T Consensus 223 ~l~~N~i~~~~ 233 (308)
T 1h6u_A 223 TLTNQTITNQP 233 (308)
T ss_dssp EEEEEEEECCC
T ss_pred EccCCeeecCC
Confidence 77777777666
No 68
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.79 E-value=4.1e-22 Score=205.39 Aligned_cols=292 Identities=17% Similarity=0.177 Sum_probs=178.1
Q ss_pred CccCceEEEecCCCCCCCCCC--C-CCCCceEEECCCCCCc-----ccccccCCCCCCcEEEccCCCCCCCCC-CC-CCC
Q 047943 14 LPEELRYLHWYEYPLKTLPSN--F-EPENLLELNLPYSKIE-----TIWEVKKEAPKLKYINLHNSQYLTGMP-DL-SET 83 (479)
Q Consensus 14 l~~~Lr~L~~~~~~l~~lp~~--~-~~~~L~~L~L~~s~i~-----~l~~~~~~l~~L~~L~Ls~~~~l~~~p-~l-~~l 83 (479)
+|++|+.|+++++.+...+.. + .+++|++|++++|.+. .++..+..+++|+.|++++|......+ .+ ..+
T Consensus 1 l~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l 80 (461)
T 1z7x_W 1 MSLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGL 80 (461)
T ss_dssp -CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTT
T ss_pred CCccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHH
Confidence 356899999999998765432 4 6889999999999988 457778899999999999986432211 11 223
Q ss_pred C----CCcEEeecCCCCCC----CCCccccccCCccccceeeccCCCceec-Cccc-----cCCCCCCEEeccCCC----
Q 047943 84 P----NLERLNILNCTNLA----YIPSCIHNFNNLRSVIGLCLRNTAIEEV-PSSI-----ESLTKLEKLDLSYCT---- 145 (479)
Q Consensus 84 ~----~L~~L~L~~c~~l~----~~p~~l~~l~~L~~L~~L~L~~~~i~~l-p~~i-----~~l~~L~~L~L~~c~---- 145 (479)
+ +|++|++++|.... .++..+ .++++|++|++++|.+... +..+ ...++|+.|++++|.
T Consensus 81 ~~~~~~L~~L~L~~n~i~~~~~~~l~~~l---~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~ 157 (461)
T 1z7x_W 81 QTPSCKIQKLSLQNCCLTGAGCGVLSSTL---RTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAA 157 (461)
T ss_dssp CSTTCCCCEEECTTSCCBGGGHHHHHHHT---TSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGG
T ss_pred hhCCCceeEEEccCCCCCHHHHHHHHHHH---ccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHH
Confidence 3 79999999986442 234444 4455677799999988632 2222 235689999999874
Q ss_pred ----------CCCCCCEEecCCCCCCCccchhhh-----ccccCCeeeccCccccc-----cCcccccccCCCCCC----
Q 047943 146 ----------RLKGLCKLDLGYCSKFECFPEIIE-----KMERLRSVDLQSTEVEE-----LPSSMENLEGLKDLP---- 201 (479)
Q Consensus 146 ----------~L~~L~~L~L~~c~~l~~~p~~~~-----~l~~L~~L~L~~~~i~~-----lp~~i~~l~~L~~lp---- 201 (479)
.+++|++|++++|......+..+. ..++|++|++++|.+.. ++..+..+++|+.+.
T Consensus 158 ~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n 237 (461)
T 1z7x_W 158 SCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSN 237 (461)
T ss_dssp GHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSS
T ss_pred HHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCC
Confidence 357899999999875443333332 25599999999998886 455555555555411
Q ss_pred ------------CCCCCCCCCCeeecCCC-----------ccccccCCCceeecCCCCCC-----CCCccc-CCCCCCCE
Q 047943 202 ------------DSLPNLKSLQFLNVERL-----------FSIADLDKLEDLSISGRRGL-----ILPPLL-SGLSSLTK 252 (479)
Q Consensus 202 ------------~~l~~l~~L~~L~l~~l-----------~~l~~l~~L~~L~l~~~~~~-----~lp~~~-~~l~~L~~ 252 (479)
.....+++|++|++++. ..+..+++|++|++++|... .+...+ ...++|++
T Consensus 238 ~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~ 317 (461)
T 1z7x_W 238 KLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLES 317 (461)
T ss_dssp BCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCE
T ss_pred cCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCcccee
Confidence 11123455566655551 11223555666666555421 111111 12245666
Q ss_pred EEcCCCCCcc-----CCccCCCCCCCCEEeCCCCcCCccChhhhcC-----CCchhHHHHHhhhhhhh
Q 047943 253 LVLTCCDVIE-----IPQDIGCLSSLELLFLCGNNFSKFTCKYQST-----FTAEKTLLELLQYATVI 310 (479)
Q Consensus 253 L~L~~~~l~~-----lp~~l~~l~~L~~L~Ls~n~l~~lp~~~i~~-----l~~L~~L~~~L~~n~~~ 310 (479)
|++++|.+++ ++..+..+++|++|++++|.++......+.. .++|++| ++++|.+.
T Consensus 318 L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L--~L~~n~i~ 383 (461)
T 1z7x_W 318 LWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVL--WLADCDVS 383 (461)
T ss_dssp EECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEE--ECTTSCCC
T ss_pred eEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEE--ECCCCCCC
Confidence 6666665553 3444445566666666666554322122221 4456666 55555543
No 69
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.78 E-value=4.6e-18 Score=164.60 Aligned_cols=201 Identities=22% Similarity=0.287 Sum_probs=121.3
Q ss_pred CCCccCceEEEecCCCCCCCCCCCCCCCceEEECCCCCCcccc-cccCCCCCCcEEEccCCCCCCCCCCCCCCCCCcEEe
Q 047943 12 EYLPEELRYLHWYEYPLKTLPSNFEPENLLELNLPYSKIETIW-EVKKEAPKLKYINLHNSQYLTGMPDLSETPNLERLN 90 (479)
Q Consensus 12 ~~l~~~Lr~L~~~~~~l~~lp~~~~~~~L~~L~L~~s~i~~l~-~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~ 90 (479)
..++ +++.+++.++.++.+|..+. +++++|+|++|.+..++ ..+..+++|+.|++++|. ++.++....+++|++|+
T Consensus 7 ~~l~-~l~~l~~~~~~l~~ip~~~~-~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~ 83 (290)
T 1p9a_G 7 SKVA-SHLEVNCDKRNLTALPPDLP-KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE-LTKLQVDGTLPVLGTLD 83 (290)
T ss_dssp ECST-TCCEEECTTSCCSSCCSCCC-TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSC-CCEEECCSCCTTCCEEE
T ss_pred cccC-CccEEECCCCCCCcCCCCCC-CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCc-cCcccCCCCCCcCCEEE
Confidence 3445 67778888877877776653 67778888888777653 557777777777777764 33344445566666666
Q ss_pred ecCCCCCCCCCccccccCCccccceeeccCCCceecCccccCCCCCCEEeccCCCCCCCCCEEecCCCCCCCccchhhhc
Q 047943 91 ILNCTNLAYIPSCIHNFNNLRSVIGLCLRNTAIEEVPSSIESLTKLEKLDLSYCTRLKGLCKLDLGYCSKFECFPEIIEK 170 (479)
Q Consensus 91 L~~c~~l~~~p~~l~~l~~L~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~L~~L~~L~L~~c~~l~~~p~~~~~ 170 (479)
+++| .+..+|..+..+++|+.|++++ |......+..+.+
T Consensus 84 Ls~N---------------------------~l~~l~~~~~~l~~L~~L~l~~--------------N~l~~l~~~~~~~ 122 (290)
T 1p9a_G 84 LSHN---------------------------QLQSLPLLGQTLPALTVLDVSF--------------NRLTSLPLGALRG 122 (290)
T ss_dssp CCSS---------------------------CCSSCCCCTTTCTTCCEEECCS--------------SCCCCCCSSTTTT
T ss_pred CCCC---------------------------cCCcCchhhccCCCCCEEECCC--------------CcCcccCHHHHcC
Confidence 6654 3334444444444444444433 2222222244555
Q ss_pred cccCCeeeccCccccccCcccccccCCCCCCCCCCCCCCCCeeecCCCccccccCCCceeecCCCCCCCCCcc-cCCCCC
Q 047943 171 MERLRSVDLQSTEVEELPSSMENLEGLKDLPDSLPNLKSLQFLNVERLFSIADLDKLEDLSISGRRGLILPPL-LSGLSS 249 (479)
Q Consensus 171 l~~L~~L~L~~~~i~~lp~~i~~l~~L~~lp~~l~~l~~L~~L~l~~l~~l~~l~~L~~L~l~~~~~~~lp~~-~~~l~~ 249 (479)
+++|++|++++|.+..+|... +..+++|+.|++++|....+|.. +..+++
T Consensus 123 l~~L~~L~L~~N~l~~~~~~~-----------------------------~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~ 173 (290)
T 1p9a_G 123 LGELQELYLKGNELKTLPPGL-----------------------------LTPTPKLEKLSLANNNLTELPAGLLNGLEN 173 (290)
T ss_dssp CTTCCEEECTTSCCCCCCTTT-----------------------------TTTCTTCCEEECTTSCCSCCCTTTTTTCTT
T ss_pred CCCCCEEECCCCCCCccChhh-----------------------------cccccCCCEEECCCCcCCccCHHHhcCcCC
Confidence 556666666666655544311 12234444455555555455543 456778
Q ss_pred CCEEEcCCCCCccCCccCCCCCCCCEEeCCCCcCCc
Q 047943 250 LTKLVLTCCDVIEIPQDIGCLSSLELLFLCGNNFSK 285 (479)
Q Consensus 250 L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~ 285 (479)
|+.|++++|.+..+|..+...++|+.|+|++|++..
T Consensus 174 L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 174 LDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBCC
T ss_pred CCEEECCCCcCCccChhhcccccCCeEEeCCCCccC
Confidence 888888888888888887778888888888887653
No 70
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.78 E-value=9e-20 Score=178.49 Aligned_cols=223 Identities=21% Similarity=0.225 Sum_probs=165.2
Q ss_pred CccCceEEEecCCCCCC--CCCCC--------CCCCceEEECCCCCCc-cccccc--CCCCCCcEEEccCCCCCCCCC-C
Q 047943 14 LPEELRYLHWYEYPLKT--LPSNF--------EPENLLELNLPYSKIE-TIWEVK--KEAPKLKYINLHNSQYLTGMP-D 79 (479)
Q Consensus 14 l~~~Lr~L~~~~~~l~~--lp~~~--------~~~~L~~L~L~~s~i~-~l~~~~--~~l~~L~~L~Ls~~~~l~~~p-~ 79 (479)
++..|+.|+++++.++. +|..+ .+++|++|+|++|+++ .+|..+ +.+++|+.|++++|..... | .
T Consensus 61 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~ 139 (312)
T 1wwl_A 61 FTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAW 139 (312)
T ss_dssp HHHHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSH
T ss_pred HHHHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHH
Confidence 34458888888888754 44433 4899999999999998 577766 8999999999999876554 5 3
Q ss_pred CCCC-----CCCcEEeecCCCCCCCCCccccccCCccccceeeccCCCcee---cCccc--cCCCCCCEEeccCCCCCCC
Q 047943 80 LSET-----PNLERLNILNCTNLAYIPSCIHNFNNLRSVIGLCLRNTAIEE---VPSSI--ESLTKLEKLDLSYCTRLKG 149 (479)
Q Consensus 80 l~~l-----~~L~~L~L~~c~~l~~~p~~l~~l~~L~~L~~L~L~~~~i~~---lp~~i--~~l~~L~~L~L~~c~~L~~ 149 (479)
+..+ ++|++|++++|......|..++++. +|++|++++|.+.. ++..+ +.+++|+.|++++
T Consensus 140 ~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~---~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~------ 210 (312)
T 1wwl_A 140 LAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFP---ALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRN------ 210 (312)
T ss_dssp HHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCS---SCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTT------
T ss_pred HHHHHHhhcCCCcEEEeeCCCCccchHHHhccCC---CCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCC------
Confidence 4544 8999999999876555556666554 56669999998653 34444 5666666666655
Q ss_pred CCEEecCCCCCCC--ccc-hhhhccccCCeeeccCccccccCcccccccCCCCCCCCCCCCCCCCeeecCCCccccccCC
Q 047943 150 LCKLDLGYCSKFE--CFP-EIIEKMERLRSVDLQSTEVEELPSSMENLEGLKDLPDSLPNLKSLQFLNVERLFSIADLDK 226 (479)
Q Consensus 150 L~~L~L~~c~~l~--~~p-~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~lp~~l~~l~~L~~L~l~~l~~l~~l~~ 226 (479)
|.... .++ ..+.++++|++|++++|.+.+.+.. ..+..+++
T Consensus 211 --------N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~----------------------------~~~~~l~~ 254 (312)
T 1wwl_A 211 --------AGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGA----------------------------PSCDWPSQ 254 (312)
T ss_dssp --------SCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCC----------------------------SCCCCCTT
T ss_pred --------CcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccch----------------------------hhhhhcCC
Confidence 33321 222 3345778999999999998874410 11223566
Q ss_pred CceeecCCCCCCCCCcccCCCCCCCEEEcCCCCCccCCccCCCCCCCCEEeCCCCcCCc
Q 047943 227 LEDLSISGRRGLILPPLLSGLSSLTKLVLTCCDVIEIPQDIGCLSSLELLFLCGNNFSK 285 (479)
Q Consensus 227 L~~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~ 285 (479)
|++|++++|....+|..+. ++|++|++++|.+.++|. +..+++|++|++++|+++.
T Consensus 255 L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 255 LNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CCEEECTTSCCSSCCSSCC--SEEEEEECCSSCCCSCCC-TTTSCEEEEEECTTCTTTC
T ss_pred CCEEECCCCccChhhhhcc--CCceEEECCCCCCCCChh-HhhCCCCCEEeccCCCCCC
Confidence 7778888898878888765 899999999999999987 8999999999999999875
No 71
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.77 E-value=2.9e-17 Score=157.14 Aligned_cols=198 Identities=21% Similarity=0.343 Sum_probs=118.7
Q ss_pred CceEEEecCCCCCCCCCCCCCCCceEEECCCCCCccccc-ccCCCCCCcEEEccCCCCCCCCC-C-CCCCCCCcEEeecC
Q 047943 17 ELRYLHWYEYPLKTLPSNFEPENLLELNLPYSKIETIWE-VKKEAPKLKYINLHNSQYLTGMP-D-LSETPNLERLNILN 93 (479)
Q Consensus 17 ~Lr~L~~~~~~l~~lp~~~~~~~L~~L~L~~s~i~~l~~-~~~~l~~L~~L~Ls~~~~l~~~p-~-l~~l~~L~~L~L~~ 93 (479)
..+.++++++.++.+|..+. ++|++|++++++++.++. .+..+++|+.|++++|.. +.+| . +.++++|++|++++
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~-~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP-ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKL-QTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC-TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCC-SCCCTTTTSSCTTCCEEECCS
T ss_pred CCCEEEccCCCCCccCCCCC-CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCcc-CeeChhhhcCCCCCCEEECCC
Confidence 45667777777777776542 567777777777766653 566667777777766643 3333 2 45566666666666
Q ss_pred CCCCCCCCccccccCCccccceeeccCCCceecCc-cccCCCCCCEEeccCCCCCCCCCEEecCCCCCCCccchhhhccc
Q 047943 94 CTNLAYIPSCIHNFNNLRSVIGLCLRNTAIEEVPS-SIESLTKLEKLDLSYCTRLKGLCKLDLGYCSKFECFPEIIEKME 172 (479)
Q Consensus 94 c~~l~~~p~~l~~l~~L~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~c~~L~~L~~L~L~~c~~l~~~p~~~~~l~ 172 (479)
|. +..+|. .+..+++|+.|++++ |......+..++.++
T Consensus 95 n~---------------------------l~~~~~~~~~~l~~L~~L~l~~--------------n~l~~~~~~~~~~l~ 133 (270)
T 2o6q_A 95 NK---------------------------LQALPIGVFDQLVNLAELRLDR--------------NQLKSLPPRVFDSLT 133 (270)
T ss_dssp SC---------------------------CCCCCTTTTTTCSSCCEEECCS--------------SCCCCCCTTTTTTCT
T ss_pred Cc---------------------------CCcCCHhHcccccCCCEEECCC--------------CccCeeCHHHhCcCc
Confidence 43 333332 223344444444433 232222334456666
Q ss_pred cCCeeeccCccccccCcccccccCCCCCCCCCCCCCCCCeeecCCCccccccCCCceeecCCCCCCCCCc-ccCCCCCCC
Q 047943 173 RLRSVDLQSTEVEELPSSMENLEGLKDLPDSLPNLKSLQFLNVERLFSIADLDKLEDLSISGRRGLILPP-LLSGLSSLT 251 (479)
Q Consensus 173 ~L~~L~L~~~~i~~lp~~i~~l~~L~~lp~~l~~l~~L~~L~l~~l~~l~~l~~L~~L~l~~~~~~~lp~-~~~~l~~L~ 251 (479)
+|++|++++|.+.++|.. .+..+++|++|++++|....++. .+..+++|+
T Consensus 134 ~L~~L~Ls~n~l~~~~~~-----------------------------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 184 (270)
T 2o6q_A 134 KLTYLSLGYNELQSLPKG-----------------------------VFDKLTSLKELRLYNNQLKRVPEGAFDKLTELK 184 (270)
T ss_dssp TCCEEECCSSCCCCCCTT-----------------------------TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred CCCEEECCCCcCCccCHh-----------------------------HccCCcccceeEecCCcCcEeChhHhccCCCcC
Confidence 777777777766655431 12233445555555566544443 366778888
Q ss_pred EEEcCCCCCccCCc-cCCCCCCCCEEeCCCCcCCcc
Q 047943 252 KLVLTCCDVIEIPQ-DIGCLSSLELLFLCGNNFSKF 286 (479)
Q Consensus 252 ~L~L~~~~l~~lp~-~l~~l~~L~~L~Ls~n~l~~l 286 (479)
.|++++|.+.++|. .+..+++|+.|++++|++..-
T Consensus 185 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 220 (270)
T 2o6q_A 185 TLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCT 220 (270)
T ss_dssp EEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCS
T ss_pred EEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCC
Confidence 88888888888654 467788899999998887643
No 72
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.77 E-value=1.6e-18 Score=162.71 Aligned_cols=144 Identities=16% Similarity=0.243 Sum_probs=94.0
Q ss_pred CCCCCCCCCCCCceEEECCCCCCccccc-ccCCCCCCcEEEccCCCCCCCCC--CCCCCCCCcEEeecCCCCCCCCC-cc
Q 047943 28 LKTLPSNFEPENLLELNLPYSKIETIWE-VKKEAPKLKYINLHNSQYLTGMP--DLSETPNLERLNILNCTNLAYIP-SC 103 (479)
Q Consensus 28 l~~lp~~~~~~~L~~L~L~~s~i~~l~~-~~~~l~~L~~L~Ls~~~~l~~~p--~l~~l~~L~~L~L~~c~~l~~~p-~~ 103 (479)
++.+|. -+++|++|++++++++.++. .++.+++|+.|++++|..++.++ .|.++++|++|++++|..+..++ ..
T Consensus 23 l~~ip~--~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~ 100 (239)
T 2xwt_C 23 IQRIPS--LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDA 100 (239)
T ss_dssp CSSCCC--CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTS
T ss_pred ccccCC--CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHH
Confidence 788888 45589999999999998875 67889999999999987566665 47888899999998855554444 33
Q ss_pred ccccCCccccceeeccCCCceecCccccCCCCCCEEeccCCCCCCCCCEEecCCCCCCCccch-hhhccccCC-eeeccC
Q 047943 104 IHNFNNLRSVIGLCLRNTAIEEVPSSIESLTKLEKLDLSYCTRLKGLCKLDLGYCSKFECFPE-IIEKMERLR-SVDLQS 181 (479)
Q Consensus 104 l~~l~~L~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~L~~L~~L~L~~c~~l~~~p~-~~~~l~~L~-~L~L~~ 181 (479)
+.++ +.|++|++++|.+..+|. ++.+++|+ .|+.|++++|..+..+|. .+.++++|+ +|++++
T Consensus 101 f~~l---~~L~~L~l~~n~l~~lp~-~~~l~~L~-----------~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~ 165 (239)
T 2xwt_C 101 LKEL---PLLKFLGIFNTGLKMFPD-LTKVYSTD-----------IFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYN 165 (239)
T ss_dssp EECC---TTCCEEEEEEECCCSCCC-CTTCCBCC-----------SEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCS
T ss_pred hCCC---CCCCEEeCCCCCCccccc-cccccccc-----------cccEEECCCCcchhhcCcccccchhcceeEEEcCC
Confidence 4443 344557777777766664 44443333 122444444423333332 355666666 666666
Q ss_pred ccccccC
Q 047943 182 TEVEELP 188 (479)
Q Consensus 182 ~~i~~lp 188 (479)
|.++.+|
T Consensus 166 n~l~~i~ 172 (239)
T 2xwt_C 166 NGFTSVQ 172 (239)
T ss_dssp CCCCEEC
T ss_pred CCCcccC
Confidence 6666554
No 73
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.77 E-value=2.5e-18 Score=161.41 Aligned_cols=158 Identities=21% Similarity=0.290 Sum_probs=124.5
Q ss_pred CccCceEEEecCCCCCCCCC-CC-CCCCceEEECCCCC-Cccccc-ccCCCCCCcEEEccCCCCCCCCC--CCCCCCCCc
Q 047943 14 LPEELRYLHWYEYPLKTLPS-NF-EPENLLELNLPYSK-IETIWE-VKKEAPKLKYINLHNSQYLTGMP--DLSETPNLE 87 (479)
Q Consensus 14 l~~~Lr~L~~~~~~l~~lp~-~~-~~~~L~~L~L~~s~-i~~l~~-~~~~l~~L~~L~Ls~~~~l~~~p--~l~~l~~L~ 87 (479)
+|.++++|+++++.++.+|. .| .+++|++|++++|+ ++.++. .+..+++|+.|++++|..++.++ .|.++++|+
T Consensus 29 ~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~ 108 (239)
T 2xwt_C 29 LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLK 108 (239)
T ss_dssp CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCC
T ss_pred CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCC
Confidence 66799999999999999987 46 89999999999997 988875 68899999999999844455655 478999999
Q ss_pred EEeecCCCCCCCCCccccccCCccccceeeccCC-CceecCcc-ccCCCCCC-EEeccCCCCCCCCCEEecCCCCCCCcc
Q 047943 88 RLNILNCTNLAYIPSCIHNFNNLRSVIGLCLRNT-AIEEVPSS-IESLTKLE-KLDLSYCTRLKGLCKLDLGYCSKFECF 164 (479)
Q Consensus 88 ~L~L~~c~~l~~~p~~l~~l~~L~~L~~L~L~~~-~i~~lp~~-i~~l~~L~-~L~L~~c~~L~~L~~L~L~~c~~l~~~ 164 (479)
+|++++|. +..+|. +..+.+++.|+.|++++| .+..+|.. +..+++|+ .|++++ | .+..+
T Consensus 109 ~L~l~~n~-l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~--------------n-~l~~i 171 (239)
T 2xwt_C 109 FLGIFNTG-LKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYN--------------N-GFTSV 171 (239)
T ss_dssp EEEEEEEC-CCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCS--------------C-CCCEE
T ss_pred EEeCCCCC-Cccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCC--------------C-CCccc
Confidence 99999975 455776 777777776779999999 99988764 77777777 777766 2 33355
Q ss_pred chhhhccccCCeeeccCcc-ccccC
Q 047943 165 PEIIEKMERLRSVDLQSTE-VEELP 188 (479)
Q Consensus 165 p~~~~~l~~L~~L~L~~~~-i~~lp 188 (479)
|......++|++|++++|. ++++|
T Consensus 172 ~~~~~~~~~L~~L~L~~n~~l~~i~ 196 (239)
T 2xwt_C 172 QGYAFNGTKLDAVYLNKNKYLTVID 196 (239)
T ss_dssp CTTTTTTCEEEEEECTTCTTCCEEC
T ss_pred CHhhcCCCCCCEEEcCCCCCcccCC
Confidence 5443333688888888884 76654
No 74
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.77 E-value=1.6e-17 Score=159.40 Aligned_cols=206 Identities=21% Similarity=0.213 Sum_probs=159.0
Q ss_pred ccCCCccCceEEEecCCCCCCCCC-CC-CCCCceEEECCCCCCccccc-ccCCCCCCcEEEccCCCCCCCCC-CCCCCCC
Q 047943 10 SLEYLPEELRYLHWYEYPLKTLPS-NF-EPENLLELNLPYSKIETIWE-VKKEAPKLKYINLHNSQYLTGMP-DLSETPN 85 (479)
Q Consensus 10 ~~~~l~~~Lr~L~~~~~~l~~lp~-~~-~~~~L~~L~L~~s~i~~l~~-~~~~l~~L~~L~Ls~~~~l~~~p-~l~~l~~ 85 (479)
.+..+|.+|++|+++++.++.++. .| .+++|++|++++|+++.++. .++.+++|+.|++++|......+ .+.++++
T Consensus 22 ip~~l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 101 (276)
T 2z62_A 22 IPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 101 (276)
T ss_dssp CCSSSCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTT
T ss_pred cCCCCCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCcc
Confidence 344567789999999999999886 45 89999999999999998764 68899999999999997655554 5899999
Q ss_pred CcEEeecCCCCCCCCCccccccCCccccceeeccCCCcee--cCccccCCCCCCEEeccCCCCCCCCCEEecCCCCCCCc
Q 047943 86 LERLNILNCTNLAYIPSCIHNFNNLRSVIGLCLRNTAIEE--VPSSIESLTKLEKLDLSYCTRLKGLCKLDLGYCSKFEC 163 (479)
Q Consensus 86 L~~L~L~~c~~l~~~p~~l~~l~~L~~L~~L~L~~~~i~~--lp~~i~~l~~L~~L~L~~c~~L~~L~~L~L~~c~~l~~ 163 (479)
|++|++++|......+..++ +++.|++|++++|.+.. +|..++.+++|+.|++++| .....
T Consensus 102 L~~L~l~~n~l~~~~~~~~~---~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N--------------~l~~~ 164 (276)
T 2z62_A 102 LQKLVAVETNLASLENFPIG---HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN--------------KIQSI 164 (276)
T ss_dssp CCEEECTTSCCCCSTTCCCT---TCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS--------------CCCEE
T ss_pred ccEEECCCCCccccCchhcc---cCCCCCEEECcCCccceecCchhhccCCCCCEEECCCC--------------CCCcC
Confidence 99999999865544343444 45567779999999986 6788888888888877763 33333
Q ss_pred cchhhhccccCC----eeeccCccccccCcccccccCCCCCCCCCCCCCCCCeeecCCCccccccCCCceeecCCCCCCC
Q 047943 164 FPEIIEKMERLR----SVDLQSTEVEELPSSMENLEGLKDLPDSLPNLKSLQFLNVERLFSIADLDKLEDLSISGRRGLI 239 (479)
Q Consensus 164 ~p~~~~~l~~L~----~L~L~~~~i~~lp~~i~~l~~L~~lp~~l~~l~~L~~L~l~~l~~l~~l~~L~~L~l~~~~~~~ 239 (479)
.+..+..+.+|+ +|++++|.+..++.... ...+|+.|++++|....
T Consensus 165 ~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~------------------------------~~~~L~~L~L~~n~l~~ 214 (276)
T 2z62_A 165 YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF------------------------------KEIRLKELALDTNQLKS 214 (276)
T ss_dssp CGGGGHHHHTCTTCCEEEECCSSCCCEECTTSS------------------------------CSCCEEEEECCSSCCSC
T ss_pred CHHHhhhhhhccccceeeecCCCcccccCcccc------------------------------CCCcccEEECCCCceee
Confidence 345666677777 88999999888764321 12357777888888766
Q ss_pred CCcc-cCCCCCCCEEEcCCCCCcc
Q 047943 240 LPPL-LSGLSSLTKLVLTCCDVIE 262 (479)
Q Consensus 240 lp~~-~~~l~~L~~L~L~~~~l~~ 262 (479)
+|.. +..+++|+.|++++|.+..
T Consensus 215 ~~~~~~~~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 215 VPDGIFDRLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp CCTTTTTTCCSCCEEECCSSCBCC
T ss_pred cCHhHhcccccccEEEccCCcccc
Confidence 6654 5789999999999998764
No 75
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.76 E-value=2.9e-18 Score=167.47 Aligned_cols=210 Identities=19% Similarity=0.262 Sum_probs=156.8
Q ss_pred ceEEECCCCCCcccccccCCCCCCcEEEccCCCCCCCCCCCCCCCCCcEEeecCCCCCCCCCccccccCCccccceeecc
Q 047943 40 LLELNLPYSKIETIWEVKKEAPKLKYINLHNSQYLTGMPDLSETPNLERLNILNCTNLAYIPSCIHNFNNLRSVIGLCLR 119 (479)
Q Consensus 40 L~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c~~l~~~p~~l~~l~~L~~L~~L~L~ 119 (479)
++.+.+..+.+.... ....+++|+.|+++++. +..++.+..+++|++|++++|. +..++. +..+++|++|+++
T Consensus 21 ~~~~~l~~~~~~~~~-~~~~l~~L~~L~l~~~~-i~~l~~~~~l~~L~~L~L~~n~-i~~~~~----~~~l~~L~~L~L~ 93 (308)
T 1h6u_A 21 AIKIAAGKSNVTDTV-TQADLDGITTLSAFGTG-VTTIEGVQYLNNLIGLELKDNQ-ITDLAP----LKNLTKITELELS 93 (308)
T ss_dssp HHHHHTTCSSTTSEE-CHHHHHTCCEEECTTSC-CCCCTTGGGCTTCCEEECCSSC-CCCCGG----GTTCCSCCEEECC
T ss_pred HHHHHhCCCCcCcee-cHHHcCCcCEEEeeCCC-ccCchhhhccCCCCEEEccCCc-CCCChh----HccCCCCCEEEcc
Confidence 344455555555432 23468899999999984 5667788889999999999874 344443 4556667778888
Q ss_pred CCCceecCccccCCCCCCEEeccCCCCCCCCCEEecCCCCCCCccchhhhccccCCeeeccCccccccCcccccccCCCC
Q 047943 120 NTAIEEVPSSIESLTKLEKLDLSYCTRLKGLCKLDLGYCSKFECFPEIIEKMERLRSVDLQSTEVEELPSSMENLEGLKD 199 (479)
Q Consensus 120 ~~~i~~lp~~i~~l~~L~~L~L~~c~~L~~L~~L~L~~c~~l~~~p~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~ 199 (479)
+|.+..++ .+..+++|+.|++++ |. +..++. +..+++|++|++++|.+.+++.
T Consensus 94 ~n~l~~~~-~~~~l~~L~~L~l~~--------------n~-l~~~~~-l~~l~~L~~L~l~~n~l~~~~~---------- 146 (308)
T 1h6u_A 94 GNPLKNVS-AIAGLQSIKTLDLTS--------------TQ-ITDVTP-LAGLSNLQVLYLDLNQITNISP---------- 146 (308)
T ss_dssp SCCCSCCG-GGTTCTTCCEEECTT--------------SC-CCCCGG-GTTCTTCCEEECCSSCCCCCGG----------
T ss_pred CCcCCCch-hhcCCCCCCEEECCC--------------CC-CCCchh-hcCCCCCCEEECCCCccCcCcc----------
Confidence 88887765 466666666666655 33 333443 7788888888888888776543
Q ss_pred CCCCCCCCCCCCeeecCCCccccccCCCceeecCCCCCCCCCcccCCCCCCCEEEcCCCCCccCCccCCCCCCCCEEeCC
Q 047943 200 LPDSLPNLKSLQFLNVERLFSIADLDKLEDLSISGRRGLILPPLLSGLSSLTKLVLTCCDVIEIPQDIGCLSSLELLFLC 279 (479)
Q Consensus 200 lp~~l~~l~~L~~L~l~~l~~l~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls 279 (479)
+..+++|+.|++++|....++. +..+++|+.|++++|.+.+++. +..+++|+.|+++
T Consensus 147 ---------------------l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~ 203 (308)
T 1h6u_A 147 ---------------------LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISDISP-LASLPNLIEVHLK 203 (308)
T ss_dssp ---------------------GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECT
T ss_pred ---------------------ccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCccCcChh-hcCCCCCCEEEcc
Confidence 3345667778888888777777 8889999999999999999775 7889999999999
Q ss_pred CCcCCccChhhhcCCCchhHHHHHhhhhhhh
Q 047943 280 GNNFSKFTCKYQSTFTAEKTLLELLQYATVI 310 (479)
Q Consensus 280 ~n~l~~lp~~~i~~l~~L~~L~~~L~~n~~~ 310 (479)
+|.++.++ .+..+++|+.| ++++|.+.
T Consensus 204 ~N~l~~~~--~l~~l~~L~~L--~l~~N~i~ 230 (308)
T 1h6u_A 204 NNQISDVS--PLANTSNLFIV--TLTNQTIT 230 (308)
T ss_dssp TSCCCBCG--GGTTCTTCCEE--EEEEEEEE
T ss_pred CCccCccc--cccCCCCCCEE--EccCCeee
Confidence 99999998 48899999999 88777653
No 76
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.76 E-value=1.1e-20 Score=200.77 Aligned_cols=85 Identities=16% Similarity=0.108 Sum_probs=57.3
Q ss_pred cccCCCceeecCCCCC----CCCCcccCCCCCCCEEEcCCCCCcc--CCccCCCCCCCCEEeCCCCcCCc--cChhhhcC
Q 047943 222 ADLDKLEDLSISGRRG----LILPPLLSGLSSLTKLVLTCCDVIE--IPQDIGCLSSLELLFLCGNNFSK--FTCKYQST 293 (479)
Q Consensus 222 ~~l~~L~~L~l~~~~~----~~lp~~~~~l~~L~~L~L~~~~l~~--lp~~l~~l~~L~~L~Ls~n~l~~--lp~~~i~~ 293 (479)
.++++|++|+++.|.. ..+......+++|+.|++++|.+++ ++..+..+++|++|+|++|.++. ++ ..+..
T Consensus 433 ~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~ 511 (592)
T 3ogk_B 433 IGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIA-AAVTK 511 (592)
T ss_dssp HHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHH-HHHHH
T ss_pred HhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHH-HHHHh
Confidence 4577888888866542 1111112346778888888888775 56666778888888888888762 44 45567
Q ss_pred CCchhHHHHHhhhhhh
Q 047943 294 FTAEKTLLELLQYATV 309 (479)
Q Consensus 294 l~~L~~L~~~L~~n~~ 309 (479)
+++|++| ++++|++
T Consensus 512 l~~L~~L--~ls~n~i 525 (592)
T 3ogk_B 512 LPSLRYL--WVQGYRA 525 (592)
T ss_dssp CSSCCEE--EEESCBC
T ss_pred cCccCee--ECcCCcC
Confidence 7888888 7777764
No 77
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.76 E-value=1e-17 Score=162.11 Aligned_cols=175 Identities=21% Similarity=0.285 Sum_probs=120.6
Q ss_pred CCCcEEeecCCCCCCCCCccccccCCccccceeeccCCCceecCccccCCCCCCEEeccCCCCCCCCCEEecCCCCCCCc
Q 047943 84 PNLERLNILNCTNLAYIPSCIHNFNNLRSVIGLCLRNTAIEEVPSSIESLTKLEKLDLSYCTRLKGLCKLDLGYCSKFEC 163 (479)
Q Consensus 84 ~~L~~L~L~~c~~l~~~p~~l~~l~~L~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~L~~L~~L~L~~c~~l~~ 163 (479)
+++++|++++|......+..+. .++.|+.|++++|.+..++.. +.+++|+.|++++ | .+..
T Consensus 31 ~~l~~L~L~~N~l~~~~~~~~~---~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~Ls~--------------N-~l~~ 91 (290)
T 1p9a_G 31 KDTTILHLSENLLYTFSLATLM---PYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLSH--------------N-QLQS 91 (290)
T ss_dssp TTCCEEECTTSCCSEEEGGGGT---TCTTCCEEECTTSCCCEEECC-SCCTTCCEEECCS--------------S-CCSS
T ss_pred CCCCEEEcCCCcCCccCHHHhh---cCCCCCEEECCCCccCcccCC-CCCCcCCEEECCC--------------C-cCCc
Confidence 3455555555433222222222 233344455555555665543 4555555555554 3 3456
Q ss_pred cchhhhccccCCeeeccCccccccCcccccccCCCCCCCCCCCCCCCCeeecCCCccccccCCCceeecCCCCCCCCCc-
Q 047943 164 FPEIIEKMERLRSVDLQSTEVEELPSSMENLEGLKDLPDSLPNLKSLQFLNVERLFSIADLDKLEDLSISGRRGLILPP- 242 (479)
Q Consensus 164 ~p~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~lp~~l~~l~~L~~L~l~~l~~l~~l~~L~~L~l~~~~~~~lp~- 242 (479)
+|..+..+++|++|++++|.++.+|.. .+..+++|++|++++|....+|.
T Consensus 92 l~~~~~~l~~L~~L~l~~N~l~~l~~~-----------------------------~~~~l~~L~~L~L~~N~l~~~~~~ 142 (290)
T 1p9a_G 92 LPLLGQTLPALTVLDVSFNRLTSLPLG-----------------------------ALRGLGELQELYLKGNELKTLPPG 142 (290)
T ss_dssp CCCCTTTCTTCCEEECCSSCCCCCCSS-----------------------------TTTTCTTCCEEECTTSCCCCCCTT
T ss_pred CchhhccCCCCCEEECCCCcCcccCHH-----------------------------HHcCCCCCCEEECCCCCCCccChh
Confidence 777788889999999999988876631 23345567777777788666655
Q ss_pred ccCCCCCCCEEEcCCCCCccCCcc-CCCCCCCCEEeCCCCcCCccChhhhcCCCchhHHHHHhhhhhh
Q 047943 243 LLSGLSSLTKLVLTCCDVIEIPQD-IGCLSSLELLFLCGNNFSKFTCKYQSTFTAEKTLLELLQYATV 309 (479)
Q Consensus 243 ~~~~l~~L~~L~L~~~~l~~lp~~-l~~l~~L~~L~Ls~n~l~~lp~~~i~~l~~L~~L~~~L~~n~~ 309 (479)
.+..+++|+.|++++|.+.++|.. +..+++|+.|+|++|.++.+| ..+..+.+|+.| ++++|.+
T Consensus 143 ~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip-~~~~~~~~L~~l--~L~~Np~ 207 (290)
T 1p9a_G 143 LLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIP-KGFFGSHLLPFA--FLHGNPW 207 (290)
T ss_dssp TTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCCCSEE--ECCSCCB
T ss_pred hcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccC-hhhcccccCCeE--EeCCCCc
Confidence 457889999999999999997764 578999999999999999999 888888899999 7777654
No 78
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.76 E-value=2.7e-17 Score=157.35 Aligned_cols=197 Identities=19% Similarity=0.215 Sum_probs=134.6
Q ss_pred CceEEECCCCCCcccccccCCCCCCcEEEccCCCCCCCCC-CCCCCCCCcEEeecCCCCCCCCCccccccCCccccceee
Q 047943 39 NLLELNLPYSKIETIWEVKKEAPKLKYINLHNSQYLTGMP-DLSETPNLERLNILNCTNLAYIPSCIHNFNNLRSVIGLC 117 (479)
Q Consensus 39 ~L~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p-~l~~l~~L~~L~L~~c~~l~~~p~~l~~l~~L~~L~~L~ 117 (479)
+.+++++++++++.+|..+. ++|+.|++++|......+ .+.++++|++|++++
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~------------------------ 70 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLND------------------------ 70 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCS------------------------
T ss_pred CCCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCC------------------------
Confidence 45566666666666655432 456666666654322222 355555555555555
Q ss_pred ccCCCceecCcc-ccCCCCCCEEeccCCCCCCCCCEEecCCCCCCCccchhhhccccCCeeeccCccccccCcccccccC
Q 047943 118 LRNTAIEEVPSS-IESLTKLEKLDLSYCTRLKGLCKLDLGYCSKFECFPEIIEKMERLRSVDLQSTEVEELPSSMENLEG 196 (479)
Q Consensus 118 L~~~~i~~lp~~-i~~l~~L~~L~L~~c~~L~~L~~L~L~~c~~l~~~p~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~ 196 (479)
|.+..+|.. +..+++|++|++++ |......+..+..+++|++|++++|.+..++..
T Consensus 71 ---n~l~~i~~~~~~~l~~L~~L~l~~--------------n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~------ 127 (270)
T 2o6q_A 71 ---NKLQTLPAGIFKELKNLETLWVTD--------------NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPR------ 127 (270)
T ss_dssp ---SCCSCCCTTTTSSCTTCCEEECCS--------------SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTT------
T ss_pred ---CccCeeChhhhcCCCCCCEEECCC--------------CcCCcCCHhHcccccCCCEEECCCCccCeeCHH------
Confidence 444555544 35566666666655 333333345678889999999999988876542
Q ss_pred CCCCCCCCCCCCCCCeeecCCCccccccCCCceeecCCCCCCCCCcc-cCCCCCCCEEEcCCCCCccCCc-cCCCCCCCC
Q 047943 197 LKDLPDSLPNLKSLQFLNVERLFSIADLDKLEDLSISGRRGLILPPL-LSGLSSLTKLVLTCCDVIEIPQ-DIGCLSSLE 274 (479)
Q Consensus 197 L~~lp~~l~~l~~L~~L~l~~l~~l~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~L~~~~l~~lp~-~l~~l~~L~ 274 (479)
.+..+++|++|++++|....+|.. +..+++|+.|++++|.+.+++. .+..+++|+
T Consensus 128 -----------------------~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 184 (270)
T 2o6q_A 128 -----------------------VFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELK 184 (270)
T ss_dssp -----------------------TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred -----------------------HhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcC
Confidence 133456677777777886666654 6789999999999999999654 578899999
Q ss_pred EEeCCCCcCCccChhhhcCCCchhHHHHHhhhhhh
Q 047943 275 LLFLCGNNFSKFTCKYQSTFTAEKTLLELLQYATV 309 (479)
Q Consensus 275 ~L~Ls~n~l~~lp~~~i~~l~~L~~L~~~L~~n~~ 309 (479)
.|++++|.++.+|...+..+++|+.| ++++|++
T Consensus 185 ~L~L~~N~l~~~~~~~~~~l~~L~~L--~l~~N~~ 217 (270)
T 2o6q_A 185 TLKLDNNQLKRVPEGAFDSLEKLKML--QLQENPW 217 (270)
T ss_dssp EEECCSSCCSCCCTTTTTTCTTCCEE--ECCSSCB
T ss_pred EEECCCCcCCcCCHHHhccccCCCEE--EecCCCe
Confidence 99999999999984568889999999 7777754
No 79
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.75 E-value=1.3e-18 Score=180.69 Aligned_cols=225 Identities=14% Similarity=0.111 Sum_probs=174.3
Q ss_pred cCceEEEecCCCCCCCCC-CC-CCCCceEEECCCCCCcccccccCCCCCCcEEEccCCCCCCCCCCCCCCCCCcEEeecC
Q 047943 16 EELRYLHWYEYPLKTLPS-NF-EPENLLELNLPYSKIETIWEVKKEAPKLKYINLHNSQYLTGMPDLSETPNLERLNILN 93 (479)
Q Consensus 16 ~~Lr~L~~~~~~l~~lp~-~~-~~~~L~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~ 93 (479)
++|+.|+++++.+..++. .| .+++|++|+|++|.+...+. +..+++|+.|+|++|. ++.+| ..++|++|++++
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~---~~~~L~~L~L~~ 108 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY-VQELL---VGPSIETLHAAN 108 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSE-EEEEE---ECTTCCEEECCS
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCc-CCCCC---CCCCcCEEECcC
Confidence 389999999999998874 55 89999999999999987765 8999999999999985 33333 338999999999
Q ss_pred CCCCCCCCccccccCCccccceeeccCCCceec-CccccCCCCCCEEeccCCCCCCCCCEEecCCCCCCCccchhhh-cc
Q 047943 94 CTNLAYIPSCIHNFNNLRSVIGLCLRNTAIEEV-PSSIESLTKLEKLDLSYCTRLKGLCKLDLGYCSKFECFPEIIE-KM 171 (479)
Q Consensus 94 c~~l~~~p~~l~~l~~L~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~c~~L~~L~~L~L~~c~~l~~~p~~~~-~l 171 (479)
|......+. .++.|+.|++++|.+..+ |..++.+++|+.|++++ |...+..|..+. .+
T Consensus 109 N~l~~~~~~------~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~--------------N~l~~~~~~~l~~~l 168 (487)
T 3oja_A 109 NNISRVSCS------RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKL--------------NEIDTVNFAELAASS 168 (487)
T ss_dssp SCCCCEEEC------CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTT--------------SCCCEEEGGGGGGGT
T ss_pred CcCCCCCcc------ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCC--------------CCCCCcChHHHhhhC
Confidence 865433222 346688899999999876 45677888887777776 333343454443 67
Q ss_pred ccCCeeeccCccccccCcccccccCCCCCCCCCCCCCCCCeeecCC--C----ccccccCCCceeecCCCCCCCCCcccC
Q 047943 172 ERLRSVDLQSTEVEELPSSMENLEGLKDLPDSLPNLKSLQFLNVER--L----FSIADLDKLEDLSISGRRGLILPPLLS 245 (479)
Q Consensus 172 ~~L~~L~L~~~~i~~lp~~i~~l~~L~~lp~~l~~l~~L~~L~l~~--l----~~l~~l~~L~~L~l~~~~~~~lp~~~~ 245 (479)
++|++|++++|.+.++|. ...+++|+.|++++ + +.+..+++|+.|++++|....+|..+.
T Consensus 169 ~~L~~L~Ls~N~l~~~~~--------------~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~ 234 (487)
T 3oja_A 169 DTLEHLNLQYNFIYDVKG--------------QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALR 234 (487)
T ss_dssp TTCCEEECTTSCCCEEEC--------------CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCC
T ss_pred CcccEEecCCCccccccc--------------cccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcccchhhc
Confidence 777777777777776542 12356677777766 1 446678899999999999888898889
Q ss_pred CCCCCCEEEcCCCCCc--cCCccCCCCCCCCEEeCC
Q 047943 246 GLSSLTKLVLTCCDVI--EIPQDIGCLSSLELLFLC 279 (479)
Q Consensus 246 ~l~~L~~L~L~~~~l~--~lp~~l~~l~~L~~L~Ls 279 (479)
.+++|+.|++++|.+. .+|..+..++.|+.|+++
T Consensus 235 ~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 235 FSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp CCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred cCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 9999999999999998 388888888888888775
No 80
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.75 E-value=1.5e-17 Score=162.37 Aligned_cols=228 Identities=15% Similarity=0.120 Sum_probs=131.4
Q ss_pred CCCCceEEECCCCCCcc--ccc--ccCCCCCCcEEEccCCCCCCCCC-CC--CCCCCCcEEeecCCCCCCCCCcc-cccc
Q 047943 36 EPENLLELNLPYSKIET--IWE--VKKEAPKLKYINLHNSQYLTGMP-DL--SETPNLERLNILNCTNLAYIPSC-IHNF 107 (479)
Q Consensus 36 ~~~~L~~L~L~~s~i~~--l~~--~~~~l~~L~~L~Ls~~~~l~~~p-~l--~~l~~L~~L~L~~c~~l~~~p~~-l~~l 107 (479)
....++.+.+.+..+.. +.. ....+++|+.|++++|......| .+ ..+++|++|++++|......+.. ....
T Consensus 62 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~ 141 (310)
T 4glp_A 62 KALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQ 141 (310)
T ss_dssp SSCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHT
T ss_pred hhcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHh
Confidence 44567888888877652 111 12235679999999998776776 45 88999999999998766544421 1122
Q ss_pred CCccccceeeccCCCceecC-ccccCCCCCCEEeccCCCCCCCCCEEecCCCCCCCc--cc--hhhhccccCCeeeccCc
Q 047943 108 NNLRSVIGLCLRNTAIEEVP-SSIESLTKLEKLDLSYCTRLKGLCKLDLGYCSKFEC--FP--EIIEKMERLRSVDLQST 182 (479)
Q Consensus 108 ~~L~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~c~~L~~L~~L~L~~c~~l~~--~p--~~~~~l~~L~~L~L~~~ 182 (479)
..+++|++|++++|.+..++ ..++.+++|++|++++|. ..+. ++ ..++.+++|++|++++|
T Consensus 142 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~--------------l~~~~~~~~~~~~~~l~~L~~L~Ls~N 207 (310)
T 4glp_A 142 WLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNP--------------GLGERGLMAALCPHKFPAIQNLALRNT 207 (310)
T ss_dssp TBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCT--------------TCHHHHHHTTSCTTSSCCCCSCBCCSS
T ss_pred hhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCC--------------CccchhhhHHHhhhcCCCCCEEECCCC
Confidence 35667788999999988765 467777777777777642 2211 11 11234555666666665
Q ss_pred cccccCcccccccCCCCCCCCCCCCCCCCeeecCCCccccccCCCceeecCCCCCCCC-CcccCCC---CCCCEEEcCCC
Q 047943 183 EVEELPSSMENLEGLKDLPDSLPNLKSLQFLNVERLFSIADLDKLEDLSISGRRGLIL-PPLLSGL---SSLTKLVLTCC 258 (479)
Q Consensus 183 ~i~~lp~~i~~l~~L~~lp~~l~~l~~L~~L~l~~l~~l~~l~~L~~L~l~~~~~~~l-p~~~~~l---~~L~~L~L~~~ 258 (479)
.++.++.....+ +..+++|++|++++|..... |..+..+ ++|++|++++|
T Consensus 208 ~l~~l~~~~~~l--------------------------~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N 261 (310)
T 4glp_A 208 GMETPTGVCAAL--------------------------AAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFA 261 (310)
T ss_dssp CCCCHHHHHHHH--------------------------HHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSS
T ss_pred CCCchHHHHHHH--------------------------HhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCC
Confidence 554433210000 11233344444444543322 3333333 45666666666
Q ss_pred CCccCCccCCCCCCCCEEeCCCCcCCccChhhhcCCCchhHHHHHhhhhhh
Q 047943 259 DVIEIPQDIGCLSSLELLFLCGNNFSKFTCKYQSTFTAEKTLLELLQYATV 309 (479)
Q Consensus 259 ~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~~i~~l~~L~~L~~~L~~n~~ 309 (479)
.+.++|..+. ++|+.|+|++|+++.+| .+..+++|+.| ++++|++
T Consensus 262 ~l~~lp~~~~--~~L~~L~Ls~N~l~~~~--~~~~l~~L~~L--~L~~N~l 306 (310)
T 4glp_A 262 GLEQVPKGLP--AKLRVLDLSSNRLNRAP--QPDELPEVDNL--TLDGNPF 306 (310)
T ss_dssp CCCSCCSCCC--SCCSCEECCSCCCCSCC--CTTSCCCCSCE--ECSSTTT
T ss_pred CCCchhhhhc--CCCCEEECCCCcCCCCc--hhhhCCCccEE--ECcCCCC
Confidence 6665555443 56666666666666555 24555666666 6666654
No 81
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.74 E-value=1.9e-16 Score=151.58 Aligned_cols=214 Identities=18% Similarity=0.237 Sum_probs=131.9
Q ss_pred eEEEecCCCCCCCCCCCCCCCceEEECCCCCCcccccccCCCCCCcEEEccCCCCCCCCCCCCCCCCCcEEeecCCCCCC
Q 047943 19 RYLHWYEYPLKTLPSNFEPENLLELNLPYSKIETIWEVKKEAPKLKYINLHNSQYLTGMPDLSETPNLERLNILNCTNLA 98 (479)
Q Consensus 19 r~L~~~~~~l~~lp~~~~~~~L~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c~~l~ 98 (479)
..+.+.+..+..+.....+++|++|++.++.++.++ ++..+++|+.|++++|. +..++.+..+++|++|++++|....
T Consensus 22 ~~l~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~L~~n~l~~ 99 (272)
T 3rfs_A 22 IKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNK-LHDISALKELTNLTYLILTGNQLQS 99 (272)
T ss_dssp HHHHHTCSCTTSEECHHHHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSC-CCCCGGGTTCTTCCEEECTTSCCCC
T ss_pred HHHHhcCcccccccccccccceeeeeeCCCCccccc-ccccCCCCcEEECCCCC-CCCchhhcCCCCCCEEECCCCccCc
Confidence 334455555555544446788888888888887664 57778888888888875 4456677888888888888864332
Q ss_pred CCCccccccCCccccceeeccCCCceecCccccCCCCCCEEeccCCCCCCCCCEEecCCCCCCCccchhhhccccCCeee
Q 047943 99 YIPSCIHNFNNLRSVIGLCLRNTAIEEVPSSIESLTKLEKLDLSYCTRLKGLCKLDLGYCSKFECFPEIIEKMERLRSVD 178 (479)
Q Consensus 99 ~~p~~l~~l~~L~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~L~~L~~L~L~~c~~l~~~p~~~~~l~~L~~L~ 178 (479)
..+..+++ +++|++|++++|.+..++. ..++.+++|++|+
T Consensus 100 ~~~~~~~~---l~~L~~L~L~~n~l~~~~~-------------------------------------~~~~~l~~L~~L~ 139 (272)
T 3rfs_A 100 LPNGVFDK---LTNLKELVLVENQLQSLPD-------------------------------------GVFDKLTNLTYLN 139 (272)
T ss_dssp CCTTTTTT---CTTCCEEECTTSCCCCCCT-------------------------------------TTTTTCTTCCEEE
T ss_pred cChhHhcC---CcCCCEEECCCCcCCccCH-------------------------------------HHhccCCCCCEEE
Confidence 21111222 2223334444444443332 2344445555555
Q ss_pred ccCccccccCcccccccCCCCCCCCCCCCCCCCeeecCCCccccccCCCceeecCCCCCCCCCc-ccCCCCCCCEEEcCC
Q 047943 179 LQSTEVEELPSSMENLEGLKDLPDSLPNLKSLQFLNVERLFSIADLDKLEDLSISGRRGLILPP-LLSGLSSLTKLVLTC 257 (479)
Q Consensus 179 L~~~~i~~lp~~i~~l~~L~~lp~~l~~l~~L~~L~l~~l~~l~~l~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~L~~ 257 (479)
+++|.+.++|.. .+..+++|+.|++++|....++. .+..+++|+.|++++
T Consensus 140 L~~n~l~~~~~~-----------------------------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~ 190 (272)
T 3rfs_A 140 LAHNQLQSLPKG-----------------------------VFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQ 190 (272)
T ss_dssp CCSSCCCCCCTT-----------------------------TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCCccCccCHH-----------------------------HhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCC
Confidence 555555443321 01223334444444455433333 356788999999999
Q ss_pred CCCccC-CccCCCCCCCCEEeCCCCcCCccChhhhcCCCchhHHHHHhhhhhhhhc
Q 047943 258 CDVIEI-PQDIGCLSSLELLFLCGNNFSKFTCKYQSTFTAEKTLLELLQYATVITR 312 (479)
Q Consensus 258 ~~l~~l-p~~l~~l~~L~~L~Ls~n~l~~lp~~~i~~l~~L~~L~~~L~~n~~~~~ 312 (479)
|.+.++ +..++.+++|+.|++++|.+.. .+++|++| ++..|.+.+.
T Consensus 191 N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l--~~~~n~~~g~ 237 (272)
T 3rfs_A 191 NQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYL--SEWINKHSGV 237 (272)
T ss_dssp SCCSCCCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHH--HHHHHHTGGG
T ss_pred CcCCccCHHHHhCCcCCCEEEccCCCccc-------cCcHHHHH--HHHHHhCCCc
Confidence 999984 4557899999999999997653 34578999 8888887643
No 82
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.73 E-value=2e-17 Score=164.47 Aligned_cols=234 Identities=21% Similarity=0.257 Sum_probs=168.5
Q ss_pred eEEEecCCCCCCCCCCCCCCCceEEECCCCCCccccc-ccCCCCCCcEEEccCCCCCCCCC--CCCCCCCCcEEeecCCC
Q 047943 19 RYLHWYEYPLKTLPSNFEPENLLELNLPYSKIETIWE-VKKEAPKLKYINLHNSQYLTGMP--DLSETPNLERLNILNCT 95 (479)
Q Consensus 19 r~L~~~~~~l~~lp~~~~~~~L~~L~L~~s~i~~l~~-~~~~l~~L~~L~Ls~~~~l~~~p--~l~~l~~L~~L~L~~c~ 95 (479)
+.++.++..++++|..+ ++++++|+|++|+|+.++. .+..+++|++|+|++|...+.+| .|.++++|+++...++.
T Consensus 12 ~~v~C~~~~Lt~iP~~l-~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N 90 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL-PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90 (350)
T ss_dssp TEEEEESTTCCSCCTTC-CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEET
T ss_pred CEEEecCCCCCccCcCc-CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCC
Confidence 56788889999999877 5789999999999999986 57999999999999998877776 37889998876666556
Q ss_pred CCCCCC-ccccccCCccccceeeccCCCceecCcc-ccCCCCCCEEeccCCCCCCCCCEEecCCCCCCCccch-hhhcc-
Q 047943 96 NLAYIP-SCIHNFNNLRSVIGLCLRNTAIEEVPSS-IESLTKLEKLDLSYCTRLKGLCKLDLGYCSKFECFPE-IIEKM- 171 (479)
Q Consensus 96 ~l~~~p-~~l~~l~~L~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~c~~L~~L~~L~L~~c~~l~~~p~-~~~~l- 171 (479)
.+..++ ..+.+ ++.|++|++++|.+..+|.. +....++..|++. ++..+..++. .+..+
T Consensus 91 ~l~~l~~~~f~~---l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~--------------~~~~i~~l~~~~f~~~~ 153 (350)
T 4ay9_X 91 NLLYINPEAFQN---LPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQ--------------DNINIHTIERNSFVGLS 153 (350)
T ss_dssp TCCEECTTSBCC---CTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEE--------------SCTTCCEECTTSSTTSB
T ss_pred cccccCchhhhh---ccccccccccccccccCCchhhcccchhhhhhhc--------------cccccccccccchhhcc
Confidence 666554 44444 44566689999988877643 3333444445444 3444444443 23333
Q ss_pred ccCCeeeccCccccccCcccccccCCCCCCCCCCCCCCCCeeecCCCccccccCCCceeecCC-CCCCCCCc-ccCCCCC
Q 047943 172 ERLRSVDLQSTEVEELPSSMENLEGLKDLPDSLPNLKSLQFLNVERLFSIADLDKLEDLSISG-RRGLILPP-LLSGLSS 249 (479)
Q Consensus 172 ~~L~~L~L~~~~i~~lp~~i~~l~~L~~lp~~l~~l~~L~~L~l~~l~~l~~l~~L~~L~l~~-~~~~~lp~-~~~~l~~ 249 (479)
..++.|++++|+++++|..+. ...+|+++.+.+ +....+|. .+.++++
T Consensus 154 ~~l~~L~L~~N~i~~i~~~~f------------------------------~~~~L~~l~l~~~n~l~~i~~~~f~~l~~ 203 (350)
T 4ay9_X 154 FESVILWLNKNGIQEIHNSAF------------------------------NGTQLDELNLSDNNNLEELPNDVFHGASG 203 (350)
T ss_dssp SSCEEEECCSSCCCEECTTSS------------------------------TTEEEEEEECTTCTTCCCCCTTTTTTEEC
T ss_pred hhhhhhccccccccCCChhhc------------------------------cccchhHHhhccCCcccCCCHHHhccCcc
Confidence 368889999999888775432 123466666664 44666765 4678899
Q ss_pred CCEEEcCCCCCccCCccCCCCCCCCEEeCCCCc-CCccChhhhcCCCchhHHHHHhhh
Q 047943 250 LTKLVLTCCDVIEIPQDIGCLSSLELLFLCGNN-FSKFTCKYQSTFTAEKTLLELLQY 306 (479)
Q Consensus 250 L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~-l~~lp~~~i~~l~~L~~L~~~L~~ 306 (479)
|+.|++++|+++.+|.. .+.+|+.|.+.++. ++.+| .+..+++|+.+ ++.+
T Consensus 204 L~~LdLs~N~l~~lp~~--~~~~L~~L~~l~~~~l~~lP--~l~~l~~L~~l--~l~~ 255 (350)
T 4ay9_X 204 PVILDISRTRIHSLPSY--GLENLKKLRARSTYNLKKLP--TLEKLVALMEA--SLTY 255 (350)
T ss_dssp CSEEECTTSCCCCCCSS--SCTTCCEEECTTCTTCCCCC--CTTTCCSCCEE--ECSC
T ss_pred cchhhcCCCCcCccChh--hhccchHhhhccCCCcCcCC--CchhCcChhhC--cCCC
Confidence 99999999999888863 47788888877665 88888 57788888888 5543
No 83
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.72 E-value=6.3e-19 Score=177.57 Aligned_cols=245 Identities=14% Similarity=0.107 Sum_probs=132.0
Q ss_pred CCCCCCC-CCCCceEEECCCCCCcc-----cccccCCCCCCcEEEccCCCCC--C-CCC-C-------CCCCCCCcEEee
Q 047943 29 KTLPSNF-EPENLLELNLPYSKIET-----IWEVKKEAPKLKYINLHNSQYL--T-GMP-D-------LSETPNLERLNI 91 (479)
Q Consensus 29 ~~lp~~~-~~~~L~~L~L~~s~i~~-----l~~~~~~l~~L~~L~Ls~~~~l--~-~~p-~-------l~~l~~L~~L~L 91 (479)
+.++..+ .+++|++|+|++|.+.. +...+..+++|+.|+|++|..- . .+| . +..+++|++|+|
T Consensus 22 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~L 101 (386)
T 2ca6_A 22 KSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRL 101 (386)
T ss_dssp HTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEEC
T ss_pred HHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEEC
Confidence 3444443 45666666666666553 3344556666666666665211 1 122 1 245566666666
Q ss_pred cCCCCCCC----CCccccccCCccccceeeccCCCcee-----cCccccCCCCCCEEeccCCCCCCCCCEEecCCCCCC-
Q 047943 92 LNCTNLAY----IPSCIHNFNNLRSVIGLCLRNTAIEE-----VPSSIESLTKLEKLDLSYCTRLKGLCKLDLGYCSKF- 161 (479)
Q Consensus 92 ~~c~~l~~----~p~~l~~l~~L~~L~~L~L~~~~i~~-----lp~~i~~l~~L~~L~L~~c~~L~~L~~L~L~~c~~l- 161 (479)
++|..... +|..+.+ +++|+.|+|++|.+.. ++..+..+. ...+.+ ..++|++|++++|...
T Consensus 102 s~n~l~~~~~~~l~~~l~~---~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~---~~~~~~--~~~~L~~L~L~~n~l~~ 173 (386)
T 2ca6_A 102 SDNAFGPTAQEPLIDFLSK---HTPLEHLYLHNNGLGPQAGAKIARALQELA---VNKKAK--NAPPLRSIICGRNRLEN 173 (386)
T ss_dssp CSCCCCTTTHHHHHHHHHH---CTTCCEEECCSSCCHHHHHHHHHHHHHHHH---HHHHHH--TCCCCCEEECCSSCCTG
T ss_pred CCCcCCHHHHHHHHHHHHh---CCCCCEEECcCCCCCHHHHHHHHHHHHHHh---hhhhcc--cCCCCcEEECCCCCCCc
Confidence 65543321 2222222 2223334444444431 111111110 000000 0045555555555544
Q ss_pred Cccc---hhhhccccCCeeeccCccccc--cCcccccccCCCCCCCCCCCCCCCCeeecCCCccccccCCCceeecCCCC
Q 047943 162 ECFP---EIIEKMERLRSVDLQSTEVEE--LPSSMENLEGLKDLPDSLPNLKSLQFLNVERLFSIADLDKLEDLSISGRR 236 (479)
Q Consensus 162 ~~~p---~~~~~l~~L~~L~L~~~~i~~--lp~~i~~l~~L~~lp~~l~~l~~L~~L~l~~l~~l~~l~~L~~L~l~~~~ 236 (479)
..++ ..+..+++|++|++++|.+.. +...+. ..+..+++|+.|++++|.
T Consensus 174 ~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~--------------------------~~l~~~~~L~~L~Ls~n~ 227 (386)
T 2ca6_A 174 GSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLL--------------------------EGLAYCQELKVLDLQDNT 227 (386)
T ss_dssp GGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHH--------------------------TTGGGCTTCCEEECCSSC
T ss_pred HHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHH--------------------------HHhhcCCCccEEECcCCC
Confidence 3334 455667777777777776652 110000 023455667777777777
Q ss_pred C-----CCCCcccCCCCCCCEEEcCCCCCcc-----CCccC--CCCCCCCEEeCCCCcCCc-----cChhhh-cCCCchh
Q 047943 237 G-----LILPPLLSGLSSLTKLVLTCCDVIE-----IPQDI--GCLSSLELLFLCGNNFSK-----FTCKYQ-STFTAEK 298 (479)
Q Consensus 237 ~-----~~lp~~~~~l~~L~~L~L~~~~l~~-----lp~~l--~~l~~L~~L~Ls~n~l~~-----lp~~~i-~~l~~L~ 298 (479)
. ..+|..+..+++|+.|+|++|.+.+ ++..+ +.+++|+.|+|++|.++. +| ..+ .++++|+
T Consensus 228 l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~-~~l~~~l~~L~ 306 (386)
T 2ca6_A 228 FTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLK-TVIDEKMPDLL 306 (386)
T ss_dssp CHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHH-HHHHHHCTTCC
T ss_pred CCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHH-HHHHhcCCCce
Confidence 5 4566667778888888888888875 35555 448888888888888876 77 555 5678888
Q ss_pred HHHHHhhhhhhh
Q 047943 299 TLLELLQYATVI 310 (479)
Q Consensus 299 ~L~~~L~~n~~~ 310 (479)
+| ++++|.+.
T Consensus 307 ~L--~l~~N~l~ 316 (386)
T 2ca6_A 307 FL--ELNGNRFS 316 (386)
T ss_dssp EE--ECTTSBSC
T ss_pred EE--EccCCcCC
Confidence 88 66666543
No 84
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.71 E-value=1.1e-17 Score=163.45 Aligned_cols=98 Identities=12% Similarity=0.016 Sum_probs=75.6
Q ss_pred cccCCCceeecCCCCCCCCCc----ccCCCCCCCEEEcCCCCCcc-CCccCCCC---CCCCEEeCCCCcCCccChhhhcC
Q 047943 222 ADLDKLEDLSISGRRGLILPP----LLSGLSSLTKLVLTCCDVIE-IPQDIGCL---SSLELLFLCGNNFSKFTCKYQST 293 (479)
Q Consensus 222 ~~l~~L~~L~l~~~~~~~lp~----~~~~l~~L~~L~L~~~~l~~-lp~~l~~l---~~L~~L~Ls~n~l~~lp~~~i~~ 293 (479)
+.+++|++|++++|....++. .+..+++|++|++++|.+.+ .|..+..+ ++|++|+|++|.++.+| ..+.
T Consensus 194 ~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp-~~~~- 271 (310)
T 4glp_A 194 HKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVP-KGLP- 271 (310)
T ss_dssp TSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCC-SCCC-
T ss_pred hcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchh-hhhc-
Confidence 456677888888888765555 24677999999999999998 48777776 79999999999999999 6654
Q ss_pred CCchhHHHHHhhhhhhhhccCCccccCCCcccccc
Q 047943 294 FTAEKTLLELLQYATVITRASSSSTLFSCNELQAA 328 (479)
Q Consensus 294 l~~L~~L~~~L~~n~~~~~~~~~~~l~~C~~L~~l 328 (479)
++|+.| ++++|++.+.. ....+++|+.+
T Consensus 272 -~~L~~L--~Ls~N~l~~~~----~~~~l~~L~~L 299 (310)
T 4glp_A 272 -AKLRVL--DLSSNRLNRAP----QPDELPEVDNL 299 (310)
T ss_dssp -SCCSCE--ECCSCCCCSCC----CTTSCCCCSCE
T ss_pred -CCCCEE--ECCCCcCCCCc----hhhhCCCccEE
Confidence 799999 99999886431 23445555544
No 85
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.71 E-value=5.8e-17 Score=155.25 Aligned_cols=197 Identities=19% Similarity=0.241 Sum_probs=142.9
Q ss_pred CCceEEECCCCCCcccccccCCCCCCcEEEccCCCCCCCCCCCCCCCCCcEEeecCCCCCCCCCccccccCCccccceee
Q 047943 38 ENLLELNLPYSKIETIWEVKKEAPKLKYINLHNSQYLTGMPDLSETPNLERLNILNCTNLAYIPSCIHNFNNLRSVIGLC 117 (479)
Q Consensus 38 ~~L~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c~~l~~~p~~l~~l~~L~~L~~L~ 117 (479)
.+++.+++..+.+... .....+++|+.|+++++. ++.++.+..+++|++|++++|...
T Consensus 19 ~~l~~l~l~~~~~~~~-~~~~~l~~L~~L~l~~~~-i~~~~~l~~l~~L~~L~l~~n~l~-------------------- 76 (272)
T 3rfs_A 19 AETIKANLKKKSVTDA-VTQNELNSIDQIIANNSD-IKSVQGIQYLPNVRYLALGGNKLH-------------------- 76 (272)
T ss_dssp HHHHHHHHTCSCTTSE-ECHHHHTTCCEEECTTSC-CCCCTTGGGCTTCCEEECTTSCCC--------------------
T ss_pred HHHHHHHhcCcccccc-cccccccceeeeeeCCCC-cccccccccCCCCcEEECCCCCCC--------------------
Confidence 3455666667666654 335678999999999985 667778889999999999987532
Q ss_pred ccCCCceecCccccCCCCCCEEeccCCCCCCCCCEEecCCCCCCCccchhhhccccCCeeeccCccccccCcccccccCC
Q 047943 118 LRNTAIEEVPSSIESLTKLEKLDLSYCTRLKGLCKLDLGYCSKFECFPEIIEKMERLRSVDLQSTEVEELPSSMENLEGL 197 (479)
Q Consensus 118 L~~~~i~~lp~~i~~l~~L~~L~L~~c~~L~~L~~L~L~~c~~l~~~p~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L 197 (479)
.++ .++.+++|++|++++ |...+..+..++++++|++|++++|.+.+++..
T Consensus 77 -------~~~-~l~~l~~L~~L~L~~--------------n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~------- 127 (272)
T 3rfs_A 77 -------DIS-ALKELTNLTYLILTG--------------NQLQSLPNGVFDKLTNLKELVLVENQLQSLPDG------- 127 (272)
T ss_dssp -------CCG-GGTTCTTCCEEECTT--------------SCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTT-------
T ss_pred -------Cch-hhcCCCCCCEEECCC--------------CccCccChhHhcCCcCCCEEECCCCcCCccCHH-------
Confidence 221 344444455444444 333333344567788899999999888876542
Q ss_pred CCCCCCCCCCCCCCeeecCCCccccccCCCceeecCCCCCCCCCc-ccCCCCCCCEEEcCCCCCccCC-ccCCCCCCCCE
Q 047943 198 KDLPDSLPNLKSLQFLNVERLFSIADLDKLEDLSISGRRGLILPP-LLSGLSSLTKLVLTCCDVIEIP-QDIGCLSSLEL 275 (479)
Q Consensus 198 ~~lp~~l~~l~~L~~L~l~~l~~l~~l~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~L~~~~l~~lp-~~l~~l~~L~~ 275 (479)
.++.+++|++|++++|....++. .+..+++|+.|++++|.+.+++ ..++.+++|+.
T Consensus 128 ----------------------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 185 (272)
T 3rfs_A 128 ----------------------VFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKD 185 (272)
T ss_dssp ----------------------TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred ----------------------HhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCE
Confidence 12345566777777788666655 4578999999999999999955 45689999999
Q ss_pred EeCCCCcCCccChhhhcCCCchhHHHHHhhhhhh
Q 047943 276 LFLCGNNFSKFTCKYQSTFTAEKTLLELLQYATV 309 (479)
Q Consensus 276 L~Ls~n~l~~lp~~~i~~l~~L~~L~~~L~~n~~ 309 (479)
|++++|.++.++...+..+++|+.| ++++|.+
T Consensus 186 L~L~~N~l~~~~~~~~~~l~~L~~L--~l~~N~~ 217 (272)
T 3rfs_A 186 LRLYQNQLKSVPDGVFDRLTSLQYI--WLHDNPW 217 (272)
T ss_dssp EECCSSCCSCCCTTTTTTCTTCCEE--ECCSSCB
T ss_pred EECCCCcCCccCHHHHhCCcCCCEE--EccCCCc
Confidence 9999999998884567899999999 7777754
No 86
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.70 E-value=6.9e-18 Score=166.39 Aligned_cols=209 Identities=15% Similarity=0.210 Sum_probs=116.0
Q ss_pred CCceEEECCCCCCcccccccCCC--CCCcEEEccCCCCCCCCCCCCCCCCCcEEeecCCCCCCC-CCccccccCCccccc
Q 047943 38 ENLLELNLPYSKIETIWEVKKEA--PKLKYINLHNSQYLTGMPDLSETPNLERLNILNCTNLAY-IPSCIHNFNNLRSVI 114 (479)
Q Consensus 38 ~~L~~L~L~~s~i~~l~~~~~~l--~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c~~l~~-~p~~l~~l~~L~~L~ 114 (479)
..++.++++++.+. +..+..+ ++++.|+++++......+.+..+++|++|++++|..... ++..+.. +++|+
T Consensus 47 ~~~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~---~~~L~ 121 (336)
T 2ast_B 47 SLWQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQ---CSKLQ 121 (336)
T ss_dssp TTSSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTT---BCCCS
T ss_pred hhheeeccccccCC--HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhh---CCCCC
Confidence 34566666666554 2333444 666677776665544455555666777777766643222 3333333 33444
Q ss_pred eeeccCCCce-ecCccccCCCCCCEEeccCCC------------CCCCCCEEecCCCCCCCc--cchhhhccc-cCCeee
Q 047943 115 GLCLRNTAIE-EVPSSIESLTKLEKLDLSYCT------------RLKGLCKLDLGYCSKFEC--FPEIIEKME-RLRSVD 178 (479)
Q Consensus 115 ~L~L~~~~i~-~lp~~i~~l~~L~~L~L~~c~------------~L~~L~~L~L~~c~~l~~--~p~~~~~l~-~L~~L~ 178 (479)
+|++++|.+. ..+..++.+++|++|++++|. ++++|++|++++|..+.. ++..+..++ +|++|+
T Consensus 122 ~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~ 201 (336)
T 2ast_B 122 NLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLN 201 (336)
T ss_dssp EEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEE
T ss_pred EEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEE
Confidence 5666666655 445556566666666666542 123344444444422221 344455555 555555
Q ss_pred ccCcc--cc--ccCcccccccCCCCCCCCCCCCCCCCeeecCCCccccccCCCceeecCCCCC--CCCCcccCCCCCCCE
Q 047943 179 LQSTE--VE--ELPSSMENLEGLKDLPDSLPNLKSLQFLNVERLFSIADLDKLEDLSISGRRG--LILPPLLSGLSSLTK 252 (479)
Q Consensus 179 L~~~~--i~--~lp~~i~~l~~L~~lp~~l~~l~~L~~L~l~~l~~l~~l~~L~~L~l~~~~~--~~lp~~~~~l~~L~~ 252 (479)
+++|. +. .+|.. +..+++|++|++++|.. ...+..+..+++|++
T Consensus 202 l~~~~~~~~~~~l~~~------------------------------~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~ 251 (336)
T 2ast_B 202 LSGYRKNLQKSDLSTL------------------------------VRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQH 251 (336)
T ss_dssp CCSCGGGSCHHHHHHH------------------------------HHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCE
T ss_pred eCCCcccCCHHHHHHH------------------------------HhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCE
Confidence 55552 22 12221 23456677777777762 344555677788888
Q ss_pred EEcCCCC-Ccc-CCccCCCCCCCCEEeCCCC
Q 047943 253 LVLTCCD-VIE-IPQDIGCLSSLELLFLCGN 281 (479)
Q Consensus 253 L~L~~~~-l~~-lp~~l~~l~~L~~L~Ls~n 281 (479)
|++++|. +.. ....++.+++|+.|++++|
T Consensus 252 L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 252 LSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp EECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred eeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 8888884 332 2234667888888888888
No 87
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.68 E-value=1.8e-18 Score=183.74 Aligned_cols=247 Identities=18% Similarity=0.126 Sum_probs=160.3
Q ss_pred CCCCceEEECCCCCCcccccccCCCCCCcEEEccCCCCCCC---C-CCCCCCCCCcEEeecCCCCCCCCCccccccCCcc
Q 047943 36 EPENLLELNLPYSKIETIWEVKKEAPKLKYINLHNSQYLTG---M-PDLSETPNLERLNILNCTNLAYIPSCIHNFNNLR 111 (479)
Q Consensus 36 ~~~~L~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~---~-p~l~~l~~L~~L~L~~c~~l~~~p~~l~~l~~L~ 111 (479)
.+++|++|++.++.+..++..++.+++|+.|++++...... . ..+..+++|+.|++.++ ....+|..+.. ++
T Consensus 218 ~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~l~~~~~~---~~ 293 (592)
T 3ogk_B 218 NCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM-GPNEMPILFPF---AA 293 (592)
T ss_dssp HCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTC-CTTTGGGGGGG---GG
T ss_pred hCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCcccc-chhHHHHHHhh---cC
Confidence 34455555555554444444444555555555543222111 1 13556667777777663 23344444444 44
Q ss_pred ccceeeccCCCce--ecCccccCCCCCCEEeccCC----------CCCCCCCEEecCC----------CCCCCc--cchh
Q 047943 112 SVIGLCLRNTAIE--EVPSSIESLTKLEKLDLSYC----------TRLKGLCKLDLGY----------CSKFEC--FPEI 167 (479)
Q Consensus 112 ~L~~L~L~~~~i~--~lp~~i~~l~~L~~L~L~~c----------~~L~~L~~L~L~~----------c~~l~~--~p~~ 167 (479)
+|++|++++|.+. .++..+..+++|+.|++.++ ..+++|++|++++ |..+.. ++..
T Consensus 294 ~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l 373 (592)
T 3ogk_B 294 QIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIAL 373 (592)
T ss_dssp GCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHH
T ss_pred CCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHH
Confidence 5666899988865 23344678899999988753 2567899999994 666643 4445
Q ss_pred hhccccCCeeeccCccccc-cCccccc-ccCCCCC-------CCC-------------CCCCCCCCeeecCC--------
Q 047943 168 IEKMERLRSVDLQSTEVEE-LPSSMEN-LEGLKDL-------PDS-------------LPNLKSLQFLNVER-------- 217 (479)
Q Consensus 168 ~~~l~~L~~L~L~~~~i~~-lp~~i~~-l~~L~~l-------p~~-------------l~~l~~L~~L~l~~-------- 217 (479)
...+++|++|+++.+.+++ .+..++. +++|+.+ ... +.++++|+.|+++.
T Consensus 374 ~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~ 453 (592)
T 3ogk_B 374 AQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDL 453 (592)
T ss_dssp HHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHH
T ss_pred HhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHH
Confidence 6678899999998777765 2233332 5555542 112 33488999999943
Q ss_pred -Ccccc-ccCCCceeecCCCCCC--CCCcccCCCCCCCEEEcCCCCCcc--CCccCCCCCCCCEEeCCCCcCCcc
Q 047943 218 -LFSIA-DLDKLEDLSISGRRGL--ILPPLLSGLSSLTKLVLTCCDVIE--IPQDIGCLSSLELLFLCGNNFSKF 286 (479)
Q Consensus 218 -l~~l~-~l~~L~~L~l~~~~~~--~lp~~~~~l~~L~~L~L~~~~l~~--lp~~l~~l~~L~~L~Ls~n~l~~l 286 (479)
+..++ .+++|++|++++|... .++..+.++++|++|++++|.+++ ++..+..+++|++|+|++|+++..
T Consensus 454 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 454 GLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp HHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred HHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence 12222 4889999999999842 455666788999999999999875 666667899999999999997744
No 88
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.68 E-value=1.8e-15 Score=142.98 Aligned_cols=61 Identities=25% Similarity=0.406 Sum_probs=43.6
Q ss_pred CCceeecCCCCCCCCCc-ccCCCCCCCEEEcCCCCCccCC-ccCCCCCCCCEEeCCCCcCCcc
Q 047943 226 KLEDLSISGRRGLILPP-LLSGLSSLTKLVLTCCDVIEIP-QDIGCLSSLELLFLCGNNFSKF 286 (479)
Q Consensus 226 ~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~L~~~~l~~lp-~~l~~l~~L~~L~Ls~n~l~~l 286 (479)
+|++|++++|....+|. .+..+++|+.|++++|.+.+++ ..+..+++|+.|++++|+++..
T Consensus 132 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 132 KLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred cccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 34444444455444443 4667788999999999988854 4678889999999999988765
No 89
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.68 E-value=5e-16 Score=163.35 Aligned_cols=184 Identities=20% Similarity=0.283 Sum_probs=96.3
Q ss_pred CceEEECCCCCCcccccccCCCCCCcEEEccCCCCCCCCCCCCCCCCCcEEeecCCCCCCCCCccccccCCccccceeec
Q 047943 39 NLLELNLPYSKIETIWEVKKEAPKLKYINLHNSQYLTGMPDLSETPNLERLNILNCTNLAYIPSCIHNFNNLRSVIGLCL 118 (479)
Q Consensus 39 ~L~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c~~l~~~p~~l~~l~~L~~L~~L~L 118 (479)
+|+.|++++++++.+|..+ +++|+.|+|++|. ++.+| ..+++|++|++++|. +..+|. +.+ +|+.|++
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N~-l~~ip--~~l~~L~~L~Ls~N~-l~~ip~-l~~-----~L~~L~L 127 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL--PPQITVLEITQNA-LISLP--ELPASLEYLDACDNR-LSTLPE-LPA-----SLKHLDV 127 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC--CTTCSEEECCSSC-CSCCC--CCCTTCCEEECCSSC-CSCCCC-CCT-----TCCEEEC
T ss_pred CccEEEeCCCCCCccCHhH--cCCCCEEECcCCC-Ccccc--cccCCCCEEEccCCC-CCCcch-hhc-----CCCEEEC
Confidence 5555555555555555443 2455555555553 23444 344555555555543 223444 322 4445555
Q ss_pred cCCCceecCccccCCCCCCEEeccCCCCCCCCCEEecCCCCCCCccchhhhccccCCeeeccCccccccCcccccccCCC
Q 047943 119 RNTAIEEVPSSIESLTKLEKLDLSYCTRLKGLCKLDLGYCSKFECFPEIIEKMERLRSVDLQSTEVEELPSSMENLEGLK 198 (479)
Q Consensus 119 ~~~~i~~lp~~i~~l~~L~~L~L~~c~~L~~L~~L~L~~c~~l~~~p~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~ 198 (479)
++|.+..+|. .+++|+.|++++ |. +..+|. .+++|++|++++|.++.+|. +.
T Consensus 128 s~N~l~~lp~---~l~~L~~L~Ls~--------------N~-l~~lp~---~l~~L~~L~Ls~N~L~~lp~-l~------ 179 (571)
T 3cvr_A 128 DNNQLTMLPE---LPALLEYINADN--------------NQ-LTMLPE---LPTSLEVLSVRNNQLTFLPE-LP------ 179 (571)
T ss_dssp CSSCCSCCCC---CCTTCCEEECCS--------------SC-CSCCCC---CCTTCCEEECCSSCCSCCCC-CC------
T ss_pred CCCcCCCCCC---cCccccEEeCCC--------------Cc-cCcCCC---cCCCcCEEECCCCCCCCcch-hh------
Confidence 5555555554 334444444433 22 222333 34456666666665555443 11
Q ss_pred CCCCCCCCCCCCCeeecCCCccccccCCCceeecCCCCCCCCCcccCCCCCC-------CEEEcCCCCCccCCccCCCCC
Q 047943 199 DLPDSLPNLKSLQFLNVERLFSIADLDKLEDLSISGRRGLILPPLLSGLSSL-------TKLVLTCCDVIEIPQDIGCLS 271 (479)
Q Consensus 199 ~lp~~l~~l~~L~~L~l~~l~~l~~l~~L~~L~l~~~~~~~lp~~~~~l~~L-------~~L~L~~~~l~~lp~~l~~l~ 271 (479)
++|+.|++++|....+|. +.. +| +.|+|++|.++.+|..+..++
T Consensus 180 --------------------------~~L~~L~Ls~N~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~ 230 (571)
T 3cvr_A 180 --------------------------ESLEALDVSTNLLESLPA-VPV--RNHHSEETEIFFRCRENRITHIPENILSLD 230 (571)
T ss_dssp --------------------------TTCCEEECCSSCCSSCCC-CC----------CCEEEECCSSCCCCCCGGGGGSC
T ss_pred --------------------------CCCCEEECcCCCCCchhh-HHH--hhhcccccceEEecCCCcceecCHHHhcCC
Confidence 234444444455555555 332 45 778888888777777777788
Q ss_pred CCCEEeCCCCcCC-ccChhhhc
Q 047943 272 SLELLFLCGNNFS-KFTCKYQS 292 (479)
Q Consensus 272 ~L~~L~Ls~n~l~-~lp~~~i~ 292 (479)
+|+.|+|++|.++ .+| ..+.
T Consensus 231 ~L~~L~L~~N~l~~~~p-~~l~ 251 (571)
T 3cvr_A 231 PTCTIILEDNPLSSRIR-ESLS 251 (571)
T ss_dssp TTEEEECCSSSCCHHHH-HHHH
T ss_pred CCCEEEeeCCcCCCcCH-HHHH
Confidence 8888888888776 334 4443
No 90
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.66 E-value=1.5e-17 Score=166.06 Aligned_cols=107 Identities=14% Similarity=0.125 Sum_probs=58.7
Q ss_pred EEecCCCCCCCCCCC--CCCCceEEECCCCCCcccc-----cccCCCC-CCcEEEccCCCCCCCCC-CCCCC-----CCC
Q 047943 21 LHWYEYPLKTLPSNF--EPENLLELNLPYSKIETIW-----EVKKEAP-KLKYINLHNSQYLTGMP-DLSET-----PNL 86 (479)
Q Consensus 21 L~~~~~~l~~lp~~~--~~~~L~~L~L~~s~i~~l~-----~~~~~l~-~L~~L~Ls~~~~l~~~p-~l~~l-----~~L 86 (479)
++++.+.+....+.+ .+++|++|+|++|.+...+ +.++.++ +|+.|+|++|..-...+ .+..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 455555555433333 3444777777777766543 4556666 67777777764333322 23332 677
Q ss_pred cEEeecCCCCCCCCCccccc-cCCc-cccceeeccCCCceecC
Q 047943 87 ERLNILNCTNLAYIPSCIHN-FNNL-RSVIGLCLRNTAIEEVP 127 (479)
Q Consensus 87 ~~L~L~~c~~l~~~p~~l~~-l~~L-~~L~~L~L~~~~i~~lp 127 (479)
++|++++|......+..+.. +..+ +.|+.|++++|.+...+
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 125 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKS 125 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSC
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHH
Confidence 77777776544333333332 3333 45666777777665443
No 91
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.66 E-value=2.3e-16 Score=152.71 Aligned_cols=61 Identities=25% Similarity=0.286 Sum_probs=31.2
Q ss_pred cCCCCCCCEEEcCCCCCccCCccCCCCCCCCEEeCCCCcCCccChhhhcCCCchhHHHHHhhhhhh
Q 047943 244 LSGLSSLTKLVLTCCDVIEIPQDIGCLSSLELLFLCGNNFSKFTCKYQSTFTAEKTLLELLQYATV 309 (479)
Q Consensus 244 ~~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~~i~~l~~L~~L~~~L~~n~~ 309 (479)
+..+++|+.|++++|.+.+++. +..+++|+.|++++|.++.++ .+..+++|+.| ++++|++
T Consensus 152 l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~~l~--~l~~l~~L~~L--~l~~n~i 212 (291)
T 1h6t_A 152 LSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLR--ALAGLKNLDVL--ELFSQEC 212 (291)
T ss_dssp GGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCG--GGTTCTTCSEE--EEEEEEE
T ss_pred hccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcCCCCh--hhccCCCCCEE--ECcCCcc
Confidence 3344455555555555555433 445555555555555555554 24555555555 5555544
No 92
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.66 E-value=6.2e-18 Score=170.33 Aligned_cols=236 Identities=17% Similarity=0.139 Sum_probs=167.3
Q ss_pred cCCccCCCccCceEEEecCCCCCC-----CCCCC-CCCCceEEECCCCCCcc----ccccc-------CCCCCCcEEEcc
Q 047943 7 IDQSLEYLPEELRYLHWYEYPLKT-----LPSNF-EPENLLELNLPYSKIET----IWEVK-------KEAPKLKYINLH 69 (479)
Q Consensus 7 ~~~~~~~l~~~Lr~L~~~~~~l~~-----lp~~~-~~~~L~~L~L~~s~i~~----l~~~~-------~~l~~L~~L~Ls 69 (479)
++..+...+ .|+.|++++|.+.. ++..+ .+++|++|+|+++.+.. +|.++ ..+++|+.|+|+
T Consensus 24 l~~~l~~~~-~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 24 VFAVLLEDD-SVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TSHHHHHCS-CCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHhcCC-CccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 344555556 79999999998865 34445 78999999999986553 34444 789999999999
Q ss_pred CCCCCCC----CC-CCCCCCCCcEEeecCCCCCCCCCccccc-cCCc---------cccceeeccCCCce--ecC---cc
Q 047943 70 NSQYLTG----MP-DLSETPNLERLNILNCTNLAYIPSCIHN-FNNL---------RSVIGLCLRNTAIE--EVP---SS 129 (479)
Q Consensus 70 ~~~~l~~----~p-~l~~l~~L~~L~L~~c~~l~~~p~~l~~-l~~L---------~~L~~L~L~~~~i~--~lp---~~ 129 (479)
+|..... +| .+..+++|++|+|++|......+..+.. +..+ +.|+.|++++|.+. .++ ..
T Consensus 103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 182 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT 182 (386)
T ss_dssp SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHH
Confidence 9975542 34 4678999999999998753222222322 3333 67788999999885 444 45
Q ss_pred ccCCCCCCEEeccCCCCCCCCCEEecCCCCCCC-----ccchhhhccccCCeeeccCcccc-----ccCcccccccCCCC
Q 047943 130 IESLTKLEKLDLSYCTRLKGLCKLDLGYCSKFE-----CFPEIIEKMERLRSVDLQSTEVE-----ELPSSMENLEGLKD 199 (479)
Q Consensus 130 i~~l~~L~~L~L~~c~~L~~L~~L~L~~c~~l~-----~~p~~~~~l~~L~~L~L~~~~i~-----~lp~~i~~l~~L~~ 199 (479)
+..+++|+.|++++ |.... .+|..+..+++|++|++++|.+. .+|..+
T Consensus 183 l~~~~~L~~L~L~~--------------n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l-------- 240 (386)
T 2ca6_A 183 FQSHRLLHTVKMVQ--------------NGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIAL-------- 240 (386)
T ss_dssp HHHCTTCCEEECCS--------------SCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHG--------
T ss_pred HHhCCCcCEEECcC--------------CCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHH--------
Confidence 66677777777766 33221 23336778889999999999884 244332
Q ss_pred CCCCCCCCCCCCeeecCCCccccccCCCceeecCCCCCCC-----CCccc--CCCCCCCEEEcCCCCCcc-----CCccC
Q 047943 200 LPDSLPNLKSLQFLNVERLFSIADLDKLEDLSISGRRGLI-----LPPLL--SGLSSLTKLVLTCCDVIE-----IPQDI 267 (479)
Q Consensus 200 lp~~l~~l~~L~~L~l~~l~~l~~l~~L~~L~l~~~~~~~-----lp~~~--~~l~~L~~L~L~~~~l~~-----lp~~l 267 (479)
..+++|++|++++|.... ++..+ ..+++|+.|+|++|.+.+ +|..+
T Consensus 241 ----------------------~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l 298 (386)
T 2ca6_A 241 ----------------------KSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVI 298 (386)
T ss_dssp ----------------------GGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHH
T ss_pred ----------------------ccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHH
Confidence 234556666777777432 34544 348999999999999997 88877
Q ss_pred -CCCCCCCEEeCCCCcCCccC
Q 047943 268 -GCLSSLELLFLCGNNFSKFT 287 (479)
Q Consensus 268 -~~l~~L~~L~Ls~n~l~~lp 287 (479)
..+++|+.|++++|.++...
T Consensus 299 ~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 299 DEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp HHHCTTCCEEECTTSBSCTTS
T ss_pred HhcCCCceEEEccCCcCCcch
Confidence 66899999999999998665
No 93
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.66 E-value=5.8e-17 Score=159.73 Aligned_cols=232 Identities=18% Similarity=0.240 Sum_probs=132.1
Q ss_pred CceEEEecCCCCCCCCCCC-CC--CCceEEECCCCCCcccccccCCCCCCcEEEccCCCCCCC-CC-CCCCCCCCcEEee
Q 047943 17 ELRYLHWYEYPLKTLPSNF-EP--ENLLELNLPYSKIETIWEVKKEAPKLKYINLHNSQYLTG-MP-DLSETPNLERLNI 91 (479)
Q Consensus 17 ~Lr~L~~~~~~l~~lp~~~-~~--~~L~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~-~p-~l~~l~~L~~L~L 91 (479)
.++.++++++.+. |..+ .+ .+++.|+++++.+...+..+..+++|+.|++++|..... ++ .+..+++|++|++
T Consensus 48 ~~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L 125 (336)
T 2ast_B 48 LWQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSL 125 (336)
T ss_dssp TSSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEEC
T ss_pred hheeeccccccCC--HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeC
Confidence 4556666655443 2222 22 566666666666655555555566666666666642222 33 2455666666666
Q ss_pred cCCCCCCCCCccccccCCccccceeeccCC-Cce--ecCccccCCCCCCEEeccCCC------------CCC-CCCEEec
Q 047943 92 LNCTNLAYIPSCIHNFNNLRSVIGLCLRNT-AIE--EVPSSIESLTKLEKLDLSYCT------------RLK-GLCKLDL 155 (479)
Q Consensus 92 ~~c~~l~~~p~~l~~l~~L~~L~~L~L~~~-~i~--~lp~~i~~l~~L~~L~L~~c~------------~L~-~L~~L~L 155 (479)
++|......+..++. +++|++|++++| .+. .++..+..+++|++|++++|. .++ +|++|++
T Consensus 126 ~~~~l~~~~~~~l~~---~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l 202 (336)
T 2ast_B 126 EGLRLSDPIVNTLAK---NSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNL 202 (336)
T ss_dssp TTCBCCHHHHHHHTT---CTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEEC
T ss_pred cCcccCHHHHHHHhc---CCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEe
Confidence 665433233333333 344455666666 444 255556666667777766662 244 6777777
Q ss_pred CCCC--CC-CccchhhhccccCCeeeccCcc-ccc-cCcccccccCCCCCCCCCCCCCCCCeeecCCCccccccCCCcee
Q 047943 156 GYCS--KF-ECFPEIIEKMERLRSVDLQSTE-VEE-LPSSMENLEGLKDLPDSLPNLKSLQFLNVERLFSIADLDKLEDL 230 (479)
Q Consensus 156 ~~c~--~l-~~~p~~~~~l~~L~~L~L~~~~-i~~-lp~~i~~l~~L~~lp~~l~~l~~L~~L~l~~l~~l~~l~~L~~L 230 (479)
++|. .. ..+|..+.++++|++|++++|. +++ .+.. +..+++|++|
T Consensus 203 ~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~------------------------------l~~l~~L~~L 252 (336)
T 2ast_B 203 SGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQE------------------------------FFQLNYLQHL 252 (336)
T ss_dssp CSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGG------------------------------GGGCTTCCEE
T ss_pred CCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHH------------------------------HhCCCCCCEe
Confidence 7774 22 5577788899999999999987 543 3322 2334556666
Q ss_pred ecCCCCCCCCC---cccCCCCCCCEEEcCCCCCccCCccCCCC-CCCCEEeCCCCcCCccC
Q 047943 231 SISGRRGLILP---PLLSGLSSLTKLVLTCCDVIEIPQDIGCL-SSLELLFLCGNNFSKFT 287 (479)
Q Consensus 231 ~l~~~~~~~lp---~~~~~l~~L~~L~L~~~~l~~lp~~l~~l-~~L~~L~Ls~n~l~~lp 287 (479)
++++|. ...+ ..+..+++|+.|++++| +.+ ..+..+ .+++.|++++|.++.+.
T Consensus 253 ~l~~~~-~~~~~~~~~l~~~~~L~~L~l~~~-i~~--~~~~~l~~~l~~L~l~~n~l~~~~ 309 (336)
T 2ast_B 253 SLSRCY-DIIPETLLELGEIPTLKTLQVFGI-VPD--GTLQLLKEALPHLQINCSHFTTIA 309 (336)
T ss_dssp ECTTCT-TCCGGGGGGGGGCTTCCEEECTTS-SCT--TCHHHHHHHSTTSEESCCCSCCTT
T ss_pred eCCCCC-CCCHHHHHHHhcCCCCCEEeccCc-cCH--HHHHHHHhhCcceEEecccCcccc
Confidence 666665 1111 13566788888888887 332 011112 23666667888877443
No 94
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.65 E-value=2.8e-16 Score=152.09 Aligned_cols=194 Identities=20% Similarity=0.295 Sum_probs=146.5
Q ss_pred CCCceEEECCCCCCcccccccCCCCCCcEEEccCCCCCCCCCCCCCCCCCcEEeecCCCCCCCCCccccccCCcccccee
Q 047943 37 PENLLELNLPYSKIETIWEVKKEAPKLKYINLHNSQYLTGMPDLSETPNLERLNILNCTNLAYIPSCIHNFNNLRSVIGL 116 (479)
Q Consensus 37 ~~~L~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c~~l~~~p~~l~~l~~L~~L~~L 116 (479)
+.++..+.+....+..+. ....+++|+.|++++|. +..++.+..+++|++|++++|... .++. +.++++|+.|
T Consensus 23 l~~~~~~~l~~~~~~~~~-~~~~l~~L~~L~l~~~~-i~~~~~~~~l~~L~~L~L~~n~l~-~~~~----l~~l~~L~~L 95 (291)
T 1h6t_A 23 FAETIKDNLKKKSVTDAV-TQNELNSIDQIIANNSD-IKSVQGIQYLPNVTKLFLNGNKLT-DIKP----LANLKNLGWL 95 (291)
T ss_dssp HHHHHHHHTTCSCTTSEE-CHHHHHTCCEEECTTSC-CCCCTTGGGCTTCCEEECCSSCCC-CCGG----GTTCTTCCEE
T ss_pred HHHHHHHHhcCCCccccc-chhhcCcccEEEccCCC-cccChhHhcCCCCCEEEccCCccC-CCcc----cccCCCCCEE
Confidence 344555566666666542 23568899999999984 566778888999999999997543 3333 5566677779
Q ss_pred eccCCCceecCccccCCCCCCEEeccCCCCCCCCCEEecCCCCCCCccchhhhccccCCeeeccCccccccCcccccccC
Q 047943 117 CLRNTAIEEVPSSIESLTKLEKLDLSYCTRLKGLCKLDLGYCSKFECFPEIIEKMERLRSVDLQSTEVEELPSSMENLEG 196 (479)
Q Consensus 117 ~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~L~~L~~L~L~~c~~l~~~p~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~ 196 (479)
++++|.+..++. ++.+++|+.|++++| . +..+ ..+..+++|++|++++|.+.+++
T Consensus 96 ~l~~n~l~~~~~-l~~l~~L~~L~L~~n--------------~-i~~~-~~l~~l~~L~~L~l~~n~l~~~~-------- 150 (291)
T 1h6t_A 96 FLDENKVKDLSS-LKDLKKLKSLSLEHN--------------G-ISDI-NGLVHLPQLESLYLGNNKITDIT-------- 150 (291)
T ss_dssp ECCSSCCCCGGG-GTTCTTCCEEECTTS--------------C-CCCC-GGGGGCTTCCEEECCSSCCCCCG--------
T ss_pred ECCCCcCCCChh-hccCCCCCEEECCCC--------------c-CCCC-hhhcCCCCCCEEEccCCcCCcch--------
Confidence 999998887664 666666666666653 2 2233 35678889999999998877652
Q ss_pred CCCCCCCCCCCCCCCeeecCCCccccccCCCceeecCCCCCCCCCcccCCCCCCCEEEcCCCCCccCCccCCCCCCCCEE
Q 047943 197 LKDLPDSLPNLKSLQFLNVERLFSIADLDKLEDLSISGRRGLILPPLLSGLSSLTKLVLTCCDVIEIPQDIGCLSSLELL 276 (479)
Q Consensus 197 L~~lp~~l~~l~~L~~L~l~~l~~l~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L 276 (479)
.+..+++|+.|++++|....++. +..+++|+.|++++|.+.+++. +..+++|+.|
T Consensus 151 -----------------------~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~~l~~-l~~l~~L~~L 205 (291)
T 1h6t_A 151 -----------------------VLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLRA-LAGLKNLDVL 205 (291)
T ss_dssp -----------------------GGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCGG-GTTCTTCSEE
T ss_pred -----------------------hhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcCCCChh-hccCCCCCEE
Confidence 23456677888888898777776 8899999999999999999875 8899999999
Q ss_pred eCCCCcCCccC
Q 047943 277 FLCGNNFSKFT 287 (479)
Q Consensus 277 ~Ls~n~l~~lp 287 (479)
++++|+++..|
T Consensus 206 ~l~~n~i~~~~ 216 (291)
T 1h6t_A 206 ELFSQECLNKP 216 (291)
T ss_dssp EEEEEEEECCC
T ss_pred ECcCCcccCCc
Confidence 99999988776
No 95
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.65 E-value=3.1e-18 Score=182.02 Aligned_cols=109 Identities=12% Similarity=0.110 Sum_probs=60.5
Q ss_pred ccCCCceeecC-----CCC-CCCCC------cccCCCCCCCEEEcCCCCCcc-CCccCC-CCCCCCEEeCCCCcCCccCh
Q 047943 223 DLDKLEDLSIS-----GRR-GLILP------PLLSGLSSLTKLVLTCCDVIE-IPQDIG-CLSSLELLFLCGNNFSKFTC 288 (479)
Q Consensus 223 ~l~~L~~L~l~-----~~~-~~~lp------~~~~~l~~L~~L~L~~~~l~~-lp~~l~-~l~~L~~L~Ls~n~l~~lp~ 288 (479)
.+++|+.|+++ +|. ....| ..+..+++|+.|++++ .+++ .+..++ .+++|+.|+|++|.++....
T Consensus 395 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~ 473 (594)
T 2p1m_B 395 NRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGM 473 (594)
T ss_dssp HCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHH
T ss_pred hCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHH
Confidence 36677777776 232 22111 1244566777777766 4544 222233 36778888888887753221
Q ss_pred hhh-cCCCchhHHHHHhhhhhhhhccCCccccCCCccccccCCCCccccccCCcc
Q 047943 289 KYQ-STFTAEKTLLELLQYATVITRASSSSTLFSCNELQAAPVFARASIMSTRIR 342 (479)
Q Consensus 289 ~~i-~~l~~L~~L~~~L~~n~~~~~~~~~~~l~~C~~L~~lp~lp~~~~~~~C~~ 342 (479)
..+ ..+++|+.| ++++|.+ ++......+..|++|+.+ .+.+|..
T Consensus 474 ~~l~~~~~~L~~L--~L~~n~~-~~~~~~~~~~~l~~L~~L-------~l~~~~~ 518 (594)
T 2p1m_B 474 HHVLSGCDSLRKL--EIRDCPF-GDKALLANASKLETMRSL-------WMSSCSV 518 (594)
T ss_dssp HHHHHHCTTCCEE--EEESCSC-CHHHHHHTGGGGGGSSEE-------EEESSCC
T ss_pred HHHHhcCCCcCEE--ECcCCCC-cHHHHHHHHHhCCCCCEE-------eeeCCCC
Confidence 233 567788888 7777776 222222233445555544 5667755
No 96
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.64 E-value=2.2e-15 Score=158.47 Aligned_cols=193 Identities=18% Similarity=0.286 Sum_probs=148.9
Q ss_pred cCceEEEecCCCCCCCCCCCCCCCceEEECCCCCCcccccccCCCCCCcEEEccCCCCCCCCCCCCCCCCCcEEeecCCC
Q 047943 16 EELRYLHWYEYPLKTLPSNFEPENLLELNLPYSKIETIWEVKKEAPKLKYINLHNSQYLTGMPDLSETPNLERLNILNCT 95 (479)
Q Consensus 16 ~~Lr~L~~~~~~l~~lp~~~~~~~L~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c~ 95 (479)
.+++.|+++++.++.+|..+ +++|++|+|++|+++.+| ..+++|+.|++++|. ++.+|.+.+ +|++|++++|.
T Consensus 59 ~~L~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~-l~~ip~l~~--~L~~L~Ls~N~ 131 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPDNL-PPQITVLEITQNALISLP---ELPASLEYLDACDNR-LSTLPELPA--SLKHLDVDNNQ 131 (571)
T ss_dssp TTCSEEECCSSCCSCCCSCC-CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSC-CSCCCCCCT--TCCEEECCSSC
T ss_pred CCccEEEeCCCCCCccCHhH-cCCCCEEECcCCCCcccc---cccCCCCEEEccCCC-CCCcchhhc--CCCEEECCCCc
Confidence 47999999999999999866 489999999999999998 568999999999996 445777554 99999999975
Q ss_pred CCCCCCccccccCCccccceeeccCCCceecCccccCCCCCCEEeccCCCCCCCCCEEecCCCCCCCccchhhhccccCC
Q 047943 96 NLAYIPSCIHNFNNLRSVIGLCLRNTAIEEVPSSIESLTKLEKLDLSYCTRLKGLCKLDLGYCSKFECFPEIIEKMERLR 175 (479)
Q Consensus 96 ~l~~~p~~l~~l~~L~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~L~~L~~L~L~~c~~l~~~p~~~~~l~~L~ 175 (479)
. ..+|. .+++|+.|++++|.+..+|. .+++|+.|++++ |. +..+|. +. ++|+
T Consensus 132 l-~~lp~------~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~--------------N~-L~~lp~-l~--~~L~ 183 (571)
T 3cvr_A 132 L-TMLPE------LPALLEYINADNNQLTMLPE---LPTSLEVLSVRN--------------NQ-LTFLPE-LP--ESLE 183 (571)
T ss_dssp C-SCCCC------CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCS--------------SC-CSCCCC-CC--TTCC
T ss_pred C-CCCCC------cCccccEEeCCCCccCcCCC---cCCCcCEEECCC--------------CC-CCCcch-hh--CCCC
Confidence 4 44666 46778889999999998886 455666666555 33 334666 44 7999
Q ss_pred eeeccCccccccCcccccccCCCCCCCCCCCCCCCCeeecCCCccccccCCCceeecCCCCCCCCCcccCCCCCCCEEEc
Q 047943 176 SVDLQSTEVEELPSSMENLEGLKDLPDSLPNLKSLQFLNVERLFSIADLDKLEDLSISGRRGLILPPLLSGLSSLTKLVL 255 (479)
Q Consensus 176 ~L~L~~~~i~~lp~~i~~l~~L~~lp~~l~~l~~L~~L~l~~l~~l~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~L 255 (479)
.|++++|.|+.+|. +.. +| ....+.|+.|++++|....+|..+..+++|+.|+|
T Consensus 184 ~L~Ls~N~L~~lp~-~~~--~L-----------------------~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L 237 (571)
T 3cvr_A 184 ALDVSTNLLESLPA-VPV--RN-----------------------HHSEETEIFFRCRENRITHIPENILSLDPTCTIIL 237 (571)
T ss_dssp EEECCSSCCSSCCC-CC---------------------------------CCEEEECCSSCCCCCCGGGGGSCTTEEEEC
T ss_pred EEECcCCCCCchhh-HHH--hh-----------------------hcccccceEEecCCCcceecCHHHhcCCCCCEEEe
Confidence 99999999998876 332 11 01223457888888998889998888999999999
Q ss_pred CCCCCcc-CCccCCC
Q 047943 256 TCCDVIE-IPQDIGC 269 (479)
Q Consensus 256 ~~~~l~~-lp~~l~~ 269 (479)
++|.+.+ +|..+..
T Consensus 238 ~~N~l~~~~p~~l~~ 252 (571)
T 3cvr_A 238 EDNPLSSRIRESLSQ 252 (571)
T ss_dssp CSSSCCHHHHHHHHH
T ss_pred eCCcCCCcCHHHHHH
Confidence 9999987 6665544
No 97
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.64 E-value=8.8e-19 Score=186.19 Aligned_cols=102 Identities=15% Similarity=0.121 Sum_probs=71.1
Q ss_pred CCCCCCeeecC-----C---Cc----------cccccCCCceeecCCCCCCCCCcccC-CCCCCCEEEcCCCCCcc--CC
Q 047943 206 NLKSLQFLNVE-----R---LF----------SIADLDKLEDLSISGRRGLILPPLLS-GLSSLTKLVLTCCDVIE--IP 264 (479)
Q Consensus 206 ~l~~L~~L~l~-----~---l~----------~l~~l~~L~~L~l~~~~~~~lp~~~~-~l~~L~~L~L~~~~l~~--lp 264 (479)
.+++|+.|+++ + +. .+..+++|++|+++++-....+..+. .+++|+.|++++|.+++ ++
T Consensus 395 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~ 474 (594)
T 2p1m_B 395 NRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMH 474 (594)
T ss_dssp HCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHH
T ss_pred hCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecCcccHHHHHHHHHhchhccEeeccCCCCcHHHHH
Confidence 47888999888 2 11 14467899999997732222222222 37899999999999876 33
Q ss_pred ccCCCCCCCCEEeCCCCcCCccCh-hhhcCCCchhHHHHHhhhhhh
Q 047943 265 QDIGCLSSLELLFLCGNNFSKFTC-KYQSTFTAEKTLLELLQYATV 309 (479)
Q Consensus 265 ~~l~~l~~L~~L~Ls~n~l~~lp~-~~i~~l~~L~~L~~~L~~n~~ 309 (479)
.....+++|+.|+|++|.++.... ..+..+++|+.| ++++|.+
T Consensus 475 ~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L--~l~~~~~ 518 (594)
T 2p1m_B 475 HVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSL--WMSSCSV 518 (594)
T ss_dssp HHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEE--EEESSCC
T ss_pred HHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEE--eeeCCCC
Confidence 333668999999999999863321 345568999999 6666655
No 98
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.63 E-value=4.2e-16 Score=165.54 Aligned_cols=191 Identities=21% Similarity=0.308 Sum_probs=109.1
Q ss_pred ceEEECCCCCCcccccccCCCCCCcEEEccCCCCCCCCCCCCCCCCCcEEeecCCCCCCCCCccccccCCccccceeecc
Q 047943 40 LLELNLPYSKIETIWEVKKEAPKLKYINLHNSQYLTGMPDLSETPNLERLNILNCTNLAYIPSCIHNFNNLRSVIGLCLR 119 (479)
Q Consensus 40 L~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c~~l~~~p~~l~~l~~L~~L~~L~L~ 119 (479)
+..+.+..+.+..+.. ...+++|+.|++++|. +..++.+..+++|+.|+|++|... .++. +..++.|+.|+|+
T Consensus 23 l~~l~l~~~~i~~~~~-~~~L~~L~~L~l~~n~-i~~l~~l~~l~~L~~L~Ls~N~l~-~~~~----l~~l~~L~~L~Ls 95 (605)
T 1m9s_A 23 TIKDNLKKKSVTDAVT-QNELNSIDQIIANNSD-IKSVQGIQYLPNVTKLFLNGNKLT-DIKP----LTNLKNLGWLFLD 95 (605)
T ss_dssp HHHHHTTCSCTTSEEC-HHHHTTCCCCBCTTCC-CCCCTTGGGCTTCCEEECTTSCCC-CCGG----GGGCTTCCEEECC
T ss_pred HHHHhccCCCcccccc-hhcCCCCCEEECcCCC-CCCChHHccCCCCCEEEeeCCCCC-CChh----hccCCCCCEEECc
Confidence 3344444444443321 2345555555555543 334445555555555555554322 2222 3334444445555
Q ss_pred CCCceecCccccCCCCCCEEeccCCCCCCCCCEEecCCCCCCCccchhhhccccCCeeeccCccccccCcccccccCCCC
Q 047943 120 NTAIEEVPSSIESLTKLEKLDLSYCTRLKGLCKLDLGYCSKFECFPEIIEKMERLRSVDLQSTEVEELPSSMENLEGLKD 199 (479)
Q Consensus 120 ~~~i~~lp~~i~~l~~L~~L~L~~c~~L~~L~~L~L~~c~~l~~~p~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~ 199 (479)
+|.+..+| .+..+++|+.|+|++ |. +..+ ..+..+++|+.|+|++|.+.+++
T Consensus 96 ~N~l~~l~-~l~~l~~L~~L~Ls~--------------N~-l~~l-~~l~~l~~L~~L~Ls~N~l~~l~----------- 147 (605)
T 1m9s_A 96 ENKIKDLS-SLKDLKKLKSLSLEH--------------NG-ISDI-NGLVHLPQLESLYLGNNKITDIT----------- 147 (605)
T ss_dssp SSCCCCCT-TSTTCTTCCEEECTT--------------SC-CCCC-GGGGGCTTCSEEECCSSCCCCCG-----------
T ss_pred CCCCCCCh-hhccCCCCCEEEecC--------------CC-CCCC-ccccCCCccCEEECCCCccCCch-----------
Confidence 55555544 345555555555544 22 2222 23566777777777777666542
Q ss_pred CCCCCCCCCCCCeeecCCCccccccCCCceeecCCCCCCCCCcccCCCCCCCEEEcCCCCCccCCccCCCCCCCCEEeCC
Q 047943 200 LPDSLPNLKSLQFLNVERLFSIADLDKLEDLSISGRRGLILPPLLSGLSSLTKLVLTCCDVIEIPQDIGCLSSLELLFLC 279 (479)
Q Consensus 200 lp~~l~~l~~L~~L~l~~l~~l~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls 279 (479)
.+..+++|+.|++++|....++. +..+++|+.|+|++|.+.++| .+..+++|+.|+|+
T Consensus 148 --------------------~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~L~ 205 (605)
T 1m9s_A 148 --------------------VLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELF 205 (605)
T ss_dssp --------------------GGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCG-GGTTCTTCSEEECC
T ss_pred --------------------hhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCCCCh-HHccCCCCCEEEcc
Confidence 13344556666666677655555 777888888888888888875 47788888888888
Q ss_pred CCcCCccC
Q 047943 280 GNNFSKFT 287 (479)
Q Consensus 280 ~n~l~~lp 287 (479)
+|++...|
T Consensus 206 ~N~l~~~p 213 (605)
T 1m9s_A 206 SQECLNKP 213 (605)
T ss_dssp SEEEECCC
T ss_pred CCcCcCCc
Confidence 88877665
No 99
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.62 E-value=1.9e-15 Score=150.06 Aligned_cols=211 Identities=14% Similarity=0.075 Sum_probs=141.0
Q ss_pred eEEECCCCCCcccccccCCCCCCcEEEccCCCCCCCCC--CCCCCCCCcEEeecCCCCCCCCCc-cccccCCccccceee
Q 047943 41 LELNLPYSKIETIWEVKKEAPKLKYINLHNSQYLTGMP--DLSETPNLERLNILNCTNLAYIPS-CIHNFNNLRSVIGLC 117 (479)
Q Consensus 41 ~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p--~l~~l~~L~~L~L~~c~~l~~~p~-~l~~l~~L~~L~~L~ 117 (479)
++++-++++++++|.++ .++++.|+|++|+ ++.+| .|.++++|++|+|++|...+.+|. .+.++.++.. .+.
T Consensus 12 ~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~--~l~ 86 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL--PRNAIELRFVLTK-LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHE--IRI 86 (350)
T ss_dssp TEEEEESTTCCSCCTTC--CTTCSEEEEESCC-CSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCE--EEE
T ss_pred CEEEecCCCCCccCcCc--CCCCCEEEccCCc-CCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhh--hhc
Confidence 45677788899998766 4789999999986 55666 489999999999999887766654 3444444432 355
Q ss_pred ccCCCceecC-ccccCCCCCCEEeccCCCCCCCCCEEecCCCCCCCccc-hhhhccccCCeeeccC-ccccccCcccccc
Q 047943 118 LRNTAIEEVP-SSIESLTKLEKLDLSYCTRLKGLCKLDLGYCSKFECFP-EIIEKMERLRSVDLQS-TEVEELPSSMENL 194 (479)
Q Consensus 118 L~~~~i~~lp-~~i~~l~~L~~L~L~~c~~L~~L~~L~L~~c~~l~~~p-~~~~~l~~L~~L~L~~-~~i~~lp~~i~~l 194 (479)
+.+|.+..++ ..++.+++|+.|+++++ . +..+| .......++..|++.+ +.+..++..
T Consensus 87 ~~~N~l~~l~~~~f~~l~~L~~L~l~~n--------------~-l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~---- 147 (350)
T 4ay9_X 87 EKANNLLYINPEAFQNLPNLQYLLISNT--------------G-IKHLPDVHKIHSLQKVLLDIQDNINIHTIERN---- 147 (350)
T ss_dssp EEETTCCEECTTSBCCCTTCCEEEEEEE--------------C-CSSCCCCTTCCBSSCEEEEEESCTTCCEECTT----
T ss_pred ccCCcccccCchhhhhcccccccccccc--------------c-cccCCchhhcccchhhhhhhcccccccccccc----
Confidence 5667777764 34566666666666552 2 22222 2233344555666644 344444421
Q ss_pred cCCCCCCCCCCCCCCCCeeecCCCcccccc-CCCceeecCCCCCCCCCcccCCCCCCCEEEcCC-CCCccCCc-cCCCCC
Q 047943 195 EGLKDLPDSLPNLKSLQFLNVERLFSIADL-DKLEDLSISGRRGLILPPLLSGLSSLTKLVLTC-CDVIEIPQ-DIGCLS 271 (479)
Q Consensus 195 ~~L~~lp~~l~~l~~L~~L~l~~l~~l~~l-~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~L~~-~~l~~lp~-~l~~l~ 271 (479)
.+..+ ..++.|++++|....+|.......+|++|++++ |.+..+|. .+..++
T Consensus 148 -------------------------~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~ 202 (350)
T 4ay9_X 148 -------------------------SFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGAS 202 (350)
T ss_dssp -------------------------SSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEE
T ss_pred -------------------------chhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCc
Confidence 11222 357778888898888887777778999999986 55667875 568999
Q ss_pred CCCEEeCCCCcCCccChhhhcCCCchhHH
Q 047943 272 SLELLFLCGNNFSKFTCKYQSTFTAEKTL 300 (479)
Q Consensus 272 ~L~~L~Ls~n~l~~lp~~~i~~l~~L~~L 300 (479)
+|+.|++++|+++.+|...+..+.+|+.+
T Consensus 203 ~L~~LdLs~N~l~~lp~~~~~~L~~L~~l 231 (350)
T 4ay9_X 203 GPVILDISRTRIHSLPSYGLENLKKLRAR 231 (350)
T ss_dssp CCSEEECTTSCCCCCCSSSCTTCCEEECT
T ss_pred ccchhhcCCCCcCccChhhhccchHhhhc
Confidence 99999999999999994444444444444
No 100
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.62 E-value=4.4e-17 Score=162.67 Aligned_cols=241 Identities=12% Similarity=0.095 Sum_probs=141.3
Q ss_pred EEECCCCCCcc-cccccCCCCCCcEEEccCCCCCCCCC-----CCCCCC-CCcEEeecCCCCCCCCCcccccc-CCc-cc
Q 047943 42 ELNLPYSKIET-IWEVKKEAPKLKYINLHNSQYLTGMP-----DLSETP-NLERLNILNCTNLAYIPSCIHNF-NNL-RS 112 (479)
Q Consensus 42 ~L~L~~s~i~~-l~~~~~~l~~L~~L~Ls~~~~l~~~p-----~l~~l~-~L~~L~L~~c~~l~~~p~~l~~l-~~L-~~ 112 (479)
.+.++++++.+ ++......++|+.|++++|..-...+ .+..++ +|++|++++|......+..+..+ ... +.
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 46788898885 45556666779999999997433332 256788 89999999986655545555443 222 66
Q ss_pred cceeeccCCCceecCcc-----ccCC-CCCCEEeccCCC--------------C-CCCCCEEecCCCCCCC----ccchh
Q 047943 113 VIGLCLRNTAIEEVPSS-----IESL-TKLEKLDLSYCT--------------R-LKGLCKLDLGYCSKFE----CFPEI 167 (479)
Q Consensus 113 L~~L~L~~~~i~~lp~~-----i~~l-~~L~~L~L~~c~--------------~-L~~L~~L~L~~c~~l~----~~p~~ 167 (479)
|++|++++|.+...+.. +..+ ++|+.|++++|. . .++|++|++++|.... .++..
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 77899999998754432 4444 788888888763 1 2466666666665442 23333
Q ss_pred hhccc-cCCeeeccCccccccCc-ccccccCCCCCCCCCCCCCCCCeeecCCCcccccc-CCCceeecCCCCCCC-----
Q 047943 168 IEKME-RLRSVDLQSTEVEELPS-SMENLEGLKDLPDSLPNLKSLQFLNVERLFSIADL-DKLEDLSISGRRGLI----- 239 (479)
Q Consensus 168 ~~~l~-~L~~L~L~~~~i~~lp~-~i~~l~~L~~lp~~l~~l~~L~~L~l~~l~~l~~l-~~L~~L~l~~~~~~~----- 239 (479)
+..++ +|++|++++|.+.+.+. .+.. .+..+ ++|++|++++|....
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~--------------------------~l~~~~~~L~~L~Ls~N~i~~~~~~~ 215 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAK--------------------------FLASIPASVTSLDLSANLLGLKSYAE 215 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHH--------------------------HHHTSCTTCCEEECTTSCGGGSCHHH
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHH--------------------------HHHhCCCCCCEEECCCCCCChhHHHH
Confidence 44444 66666666666654321 1111 11222 355555565565332
Q ss_pred CCcccCC-CCCCCEEEcCCCCCccC-----CccCCCCCCCCEEeCCCCcCCccCh-------hhhcCCCchhHHHHHhhh
Q 047943 240 LPPLLSG-LSSLTKLVLTCCDVIEI-----PQDIGCLSSLELLFLCGNNFSKFTC-------KYQSTFTAEKTLLELLQY 306 (479)
Q Consensus 240 lp~~~~~-l~~L~~L~L~~~~l~~l-----p~~l~~l~~L~~L~Ls~n~l~~lp~-------~~i~~l~~L~~L~~~L~~ 306 (479)
++..+.. .++|++|++++|.+.+. ...+..+++|+.|++++|.+..+.. ..+..+++|+.| ++++
T Consensus 216 l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~L--dL~~ 293 (362)
T 3goz_A 216 LAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILV--DKNG 293 (362)
T ss_dssp HHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEE--CTTS
T ss_pred HHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEE--ecCC
Confidence 3333333 24666666666666552 2334556666666666666332221 234455566666 6666
Q ss_pred hhhh
Q 047943 307 ATVI 310 (479)
Q Consensus 307 n~~~ 310 (479)
|.+.
T Consensus 294 N~l~ 297 (362)
T 3goz_A 294 KEIH 297 (362)
T ss_dssp CBCC
T ss_pred CcCC
Confidence 6543
No 101
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.62 E-value=1.3e-14 Score=136.97 Aligned_cols=170 Identities=20% Similarity=0.322 Sum_probs=118.9
Q ss_pred CceEEEecCCCCCCCCCCCCCCCceEEECCCCCCccccc-ccCCCCCCcEEEccCCCCCCCCC-CCCCCCCCcEEeecCC
Q 047943 17 ELRYLHWYEYPLKTLPSNFEPENLLELNLPYSKIETIWE-VKKEAPKLKYINLHNSQYLTGMP-DLSETPNLERLNILNC 94 (479)
Q Consensus 17 ~Lr~L~~~~~~l~~lp~~~~~~~L~~L~L~~s~i~~l~~-~~~~l~~L~~L~Ls~~~~l~~~p-~l~~l~~L~~L~L~~c 94 (479)
..+.++++++.++.+|..+. ++++.|+|+++++..++. .+..+++|+.|++++|......+ .+..+++|++|++++|
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~-~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 93 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP-ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN 93 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC-TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CCeEEecCCCCccccCCCCC-CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC
Confidence 56788899999999988764 689999999999887654 57889999999999986554444 3788999999999987
Q ss_pred CCCCCCCccccccCCccccceeeccCCCceecCcc-ccCCCCCCEEeccCCCCCCCCCEEecCCCCCCCccc-hhhhccc
Q 047943 95 TNLAYIPSCIHNFNNLRSVIGLCLRNTAIEEVPSS-IESLTKLEKLDLSYCTRLKGLCKLDLGYCSKFECFP-EIIEKME 172 (479)
Q Consensus 95 ~~l~~~p~~l~~l~~L~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~c~~L~~L~~L~L~~c~~l~~~p-~~~~~l~ 172 (479)
......+..+.. +++|++|++++|.+..+|.. ++.+++|+.|++++ |. +..+| ..++.++
T Consensus 94 ~l~~~~~~~~~~---l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~--------------N~-l~~~~~~~~~~l~ 155 (251)
T 3m19_A 94 QLASLPLGVFDH---LTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNT--------------NQ-LQSIPAGAFDKLT 155 (251)
T ss_dssp CCCCCCTTTTTT---CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS--------------SC-CCCCCTTTTTTCT
T ss_pred cccccChhHhcc---cCCCCEEEcCCCcCCCcChhHhccCCcccEEECcC--------------Cc-CCccCHHHcCcCc
Confidence 654333344444 45566689999988887765 46666666666665 32 22333 3566667
Q ss_pred cCCeeeccCccccccCcccccccCCCCCCCCCCCCCCCCeeecCC
Q 047943 173 RLRSVDLQSTEVEELPSSMENLEGLKDLPDSLPNLKSLQFLNVER 217 (479)
Q Consensus 173 ~L~~L~L~~~~i~~lp~~i~~l~~L~~lp~~l~~l~~L~~L~l~~ 217 (479)
+|++|++++|.+..+|. ..+..+++|+.|++++
T Consensus 156 ~L~~L~L~~N~l~~~~~------------~~~~~l~~L~~L~l~~ 188 (251)
T 3m19_A 156 NLQTLSLSTNQLQSVPH------------GAFDRLGKLQTITLFG 188 (251)
T ss_dssp TCCEEECCSSCCSCCCT------------TTTTTCTTCCEEECCS
T ss_pred CCCEEECCCCcCCccCH------------HHHhCCCCCCEEEeeC
Confidence 77777777777666543 2344456666666666
No 102
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.61 E-value=1.9e-15 Score=137.46 Aligned_cols=58 Identities=22% Similarity=0.244 Sum_probs=32.0
Q ss_pred CCCCceEEECCCCCCcccccccCCCCCCcEEEccCCCCCCCCCCCCCCCCCcEEeecCCC
Q 047943 36 EPENLLELNLPYSKIETIWEVKKEAPKLKYINLHNSQYLTGMPDLSETPNLERLNILNCT 95 (479)
Q Consensus 36 ~~~~L~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c~ 95 (479)
.+++|++|+++++.++.++ ++..+++|+.|++++| .+..++.+..+++|++|++++|.
T Consensus 42 ~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n-~~~~~~~l~~l~~L~~L~l~~n~ 99 (197)
T 4ezg_A 42 QMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNI-HATNYNPISGLSNLERLRIMGKD 99 (197)
T ss_dssp HHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESC-CCSCCGGGTTCTTCCEEEEECTT
T ss_pred hcCCccEEeccCCCccChH-HHhcCCCCCEEEccCC-CCCcchhhhcCCCCCEEEeECCc
Confidence 4455566666666555555 4555566666666655 33444455555555555555543
No 103
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.61 E-value=3.4e-15 Score=158.50 Aligned_cols=175 Identities=18% Similarity=0.295 Sum_probs=117.8
Q ss_pred CCCCCCCCcEEeecCCCCCCCCCccccccCCccccceeeccCCCceecCccccCCCCCCEEeccCCCCCCCCCEEecCCC
Q 047943 79 DLSETPNLERLNILNCTNLAYIPSCIHNFNNLRSVIGLCLRNTAIEEVPSSIESLTKLEKLDLSYCTRLKGLCKLDLGYC 158 (479)
Q Consensus 79 ~l~~l~~L~~L~L~~c~~l~~~p~~l~~l~~L~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~L~~L~~L~L~~c 158 (479)
.+..+++|+.|++++|. +..++ .+..++.|+.|+|++|.+..+++ +..+++|+.|+|++|
T Consensus 38 ~~~~L~~L~~L~l~~n~-i~~l~----~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N-------------- 97 (605)
T 1m9s_A 38 TQNELNSIDQIIANNSD-IKSVQ----GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDEN-------------- 97 (605)
T ss_dssp CHHHHTTCCCCBCTTCC-CCCCT----TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSS--------------
T ss_pred chhcCCCCCEEECcCCC-CCCCh----HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCC--------------
Confidence 34455666666666643 22222 23334444446666665555544 444555554444442
Q ss_pred CCCCccchhhhccccCCeeeccCccccccCcccccccCCCCCCCCCCCCCCCCeeecCCCccccccCCCceeecCCCCCC
Q 047943 159 SKFECFPEIIEKMERLRSVDLQSTEVEELPSSMENLEGLKDLPDSLPNLKSLQFLNVERLFSIADLDKLEDLSISGRRGL 238 (479)
Q Consensus 159 ~~l~~~p~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~lp~~l~~l~~L~~L~l~~l~~l~~l~~L~~L~l~~~~~~ 238 (479)
. +..+| .+..+++|+.|++++|.+..+ +.+..+++|+.|++++|...
T Consensus 98 ~-l~~l~-~l~~l~~L~~L~Ls~N~l~~l-------------------------------~~l~~l~~L~~L~Ls~N~l~ 144 (605)
T 1m9s_A 98 K-IKDLS-SLKDLKKLKSLSLEHNGISDI-------------------------------NGLVHLPQLESLYLGNNKIT 144 (605)
T ss_dssp C-CCCCT-TSTTCTTCCEEECTTSCCCCC-------------------------------GGGGGCTTCSEEECCSSCCC
T ss_pred C-CCCCh-hhccCCCCCEEEecCCCCCCC-------------------------------ccccCCCccCEEECCCCccC
Confidence 1 11222 344555666666666655543 33556777888888889877
Q ss_pred CCCcccCCCCCCCEEEcCCCCCccCCccCCCCCCCCEEeCCCCcCCccChhhhcCCCchhHHHHHhhhhhhhhc
Q 047943 239 ILPPLLSGLSSLTKLVLTCCDVIEIPQDIGCLSSLELLFLCGNNFSKFTCKYQSTFTAEKTLLELLQYATVITR 312 (479)
Q Consensus 239 ~lp~~~~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~~i~~l~~L~~L~~~L~~n~~~~~ 312 (479)
.+ ..+..+++|+.|+|++|.+.+++. +..+++|+.|+|++|.++.+| .+..+++|+.| +|++|.+...
T Consensus 145 ~l-~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~l~--~l~~l~~L~~L--~L~~N~l~~~ 212 (605)
T 1m9s_A 145 DI-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLR--ALAGLKNLDVL--ELFSQECLNK 212 (605)
T ss_dssp CC-GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCG--GGTTCTTCSEE--ECCSEEEECC
T ss_pred Cc-hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCCCCh--HHccCCCCCEE--EccCCcCcCC
Confidence 66 458899999999999999999665 899999999999999999987 68999999999 9999988654
No 104
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.57 E-value=2.8e-15 Score=142.79 Aligned_cols=172 Identities=19% Similarity=0.234 Sum_probs=95.7
Q ss_pred CCCCceEEECCCCCCcccccccCCCCCCcEEEccCCCCCCCCCCCCCCCCCcEEeecCCCCCCCCCccccccCCccccce
Q 047943 36 EPENLLELNLPYSKIETIWEVKKEAPKLKYINLHNSQYLTGMPDLSETPNLERLNILNCTNLAYIPSCIHNFNNLRSVIG 115 (479)
Q Consensus 36 ~~~~L~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c~~l~~~p~~l~~l~~L~~L~~ 115 (479)
.+.+++.+++.++.++.++ .+..+++|+.|++++|. ++.++.+..+++|++|++++|. +..++. +..++.|+.
T Consensus 17 ~l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~-i~~l~~l~~l~~L~~L~L~~N~-i~~~~~----l~~l~~L~~ 89 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSN-IQSLAGMQFFTNLKELHLSHNQ-ISDLSP----LKDLTKLEE 89 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSC-CCCCTTGGGCTTCCEEECCSSC-CCCCGG----GTTCSSCCE
T ss_pred HHHHHHHHHhcCCCccccc-chhhcCcCcEEECcCCC-cccchHHhhCCCCCEEECCCCc-cCCChh----hccCCCCCE
Confidence 4455666677777777665 45667777777777763 4555666667777777776653 222222 222333333
Q ss_pred eeccCCCceecCccccCCCCCCEEeccCCCCCCCCCEEecCCCCCCCccchhhhccccCCeeeccCccccccCccccccc
Q 047943 116 LCLRNTAIEEVPSSIESLTKLEKLDLSYCTRLKGLCKLDLGYCSKFECFPEIIEKMERLRSVDLQSTEVEELPSSMENLE 195 (479)
Q Consensus 116 L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~L~~L~~L~L~~c~~l~~~p~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~ 195 (479)
|++++|.+..+|... . ++|++|++++|.+++++.
T Consensus 90 L~L~~N~l~~l~~~~--------------------------------------~--~~L~~L~L~~N~l~~~~~------ 123 (263)
T 1xeu_A 90 LSVNRNRLKNLNGIP--------------------------------------S--ACLSRLFLDNNELRDTDS------ 123 (263)
T ss_dssp EECCSSCCSCCTTCC--------------------------------------C--SSCCEEECCSSCCSBSGG------
T ss_pred EECCCCccCCcCccc--------------------------------------c--CcccEEEccCCccCCChh------
Confidence 444444444333211 1 345555555554444321
Q ss_pred CCCCCCCCCCCCCCCCeeecCCCccccccCCCceeecCCCCCCCCCcccCCCCCCCEEEcCCCCCccCCccCCCCCCCCE
Q 047943 196 GLKDLPDSLPNLKSLQFLNVERLFSIADLDKLEDLSISGRRGLILPPLLSGLSSLTKLVLTCCDVIEIPQDIGCLSSLEL 275 (479)
Q Consensus 196 ~L~~lp~~l~~l~~L~~L~l~~l~~l~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~ 275 (479)
+..+++|+.|++++|....++ .+..+++|+.|++++|.+.++ ..+..+++|+.
T Consensus 124 -------------------------l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~ 176 (263)
T 1xeu_A 124 -------------------------LIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNW 176 (263)
T ss_dssp -------------------------GTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBC-TTSTTCCCCCE
T ss_pred -------------------------hcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcch-HHhccCCCCCE
Confidence 112233333444444433333 255667777777777777776 55677777888
Q ss_pred EeCCCCcCCccC
Q 047943 276 LFLCGNNFSKFT 287 (479)
Q Consensus 276 L~Ls~n~l~~lp 287 (479)
|++++|.++..|
T Consensus 177 L~l~~N~~~~~~ 188 (263)
T 1xeu_A 177 IDLTGQKCVNEP 188 (263)
T ss_dssp EEEEEEEEECCC
T ss_pred EeCCCCcccCCc
Confidence 888877776655
No 105
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.53 E-value=1.4e-17 Score=175.71 Aligned_cols=105 Identities=22% Similarity=0.232 Sum_probs=77.3
Q ss_pred CCEEecCCCCCCCccchhhhccccCCeeeccCccccccCcccccccCCCCCCCCCCCCCCCCeeecCCCccccccCCCce
Q 047943 150 LCKLDLGYCSKFECFPEIIEKMERLRSVDLQSTEVEELPSSMENLEGLKDLPDSLPNLKSLQFLNVERLFSIADLDKLED 229 (479)
Q Consensus 150 L~~L~L~~c~~l~~~p~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~lp~~l~~l~~L~~L~l~~l~~l~~l~~L~~ 229 (479)
|+.|++++| .+..+|. ++.+++|+.|++++|.++.+|..++ .+++|+.
T Consensus 443 L~~L~Ls~n-~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~------------------------------~l~~L~~ 490 (567)
T 1dce_A 443 VRVLHLAHK-DLTVLCH-LEQLLLVTHLDLSHNRLRALPPALA------------------------------ALRCLEV 490 (567)
T ss_dssp CSEEECTTS-CCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGG------------------------------GCTTCCE
T ss_pred ceEEEecCC-CCCCCcC-ccccccCcEeecCcccccccchhhh------------------------------cCCCCCE
Confidence 444555554 3444676 7888888888888888887775443 3445666
Q ss_pred eecCCCCCCCCCcccCCCCCCCEEEcCCCCCccC--CccCCCCCCCCEEeCCCCcCCccC
Q 047943 230 LSISGRRGLILPPLLSGLSSLTKLVLTCCDVIEI--PQDIGCLSSLELLFLCGNNFSKFT 287 (479)
Q Consensus 230 L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~l--p~~l~~l~~L~~L~Ls~n~l~~lp 287 (479)
|++++|....+| .+..+++|+.|+|++|.+.++ |..++.+++|+.|+|++|.++.+|
T Consensus 491 L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~ 549 (567)
T 1dce_A 491 LQASDNALENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEE 549 (567)
T ss_dssp EECCSSCCCCCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSS
T ss_pred EECCCCCCCCCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCc
Confidence 666667766677 578888888888888888885 788888888888888888888766
No 106
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.53 E-value=3.3e-14 Score=129.19 Aligned_cols=149 Identities=17% Similarity=0.233 Sum_probs=114.0
Q ss_pred CceEEEecCCCCCCCCCCCCCCCceEEECCCCCCcccccccCCCCCCcEEEccCCCCCCC-CCCCCCCCCCcEEeecCCC
Q 047943 17 ELRYLHWYEYPLKTLPSNFEPENLLELNLPYSKIETIWEVKKEAPKLKYINLHNSQYLTG-MPDLSETPNLERLNILNCT 95 (479)
Q Consensus 17 ~Lr~L~~~~~~l~~lp~~~~~~~L~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~-~p~l~~l~~L~~L~L~~c~ 95 (479)
+|+.|+++++.++.+|....+++|++|++++|.++.++ .+..+++|+.|++++|..... .+.++.+++|++|++++|.
T Consensus 45 ~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~ 123 (197)
T 4ezg_A 45 SLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSA 123 (197)
T ss_dssp TCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSB
T ss_pred CccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCc
Confidence 89999999999999995448999999999999887764 788999999999999876543 4479999999999999987
Q ss_pred CCCCCCccccccCCccccceeeccCCC-ceecCccccCCCCCCEEeccCCCCCCCCCEEecCCCCCCCccchhhhccccC
Q 047943 96 NLAYIPSCIHNFNNLRSVIGLCLRNTA-IEEVPSSIESLTKLEKLDLSYCTRLKGLCKLDLGYCSKFECFPEIIEKMERL 174 (479)
Q Consensus 96 ~l~~~p~~l~~l~~L~~L~~L~L~~~~-i~~lp~~i~~l~~L~~L~L~~c~~L~~L~~L~L~~c~~l~~~p~~~~~l~~L 174 (479)
.....+..+. .++.|++|++++|. +..+| .+..+++|+.|++++| . +..++ .+..+++|
T Consensus 124 i~~~~~~~l~---~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n--------------~-i~~~~-~l~~l~~L 183 (197)
T 4ezg_A 124 HDDSILTKIN---TLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFD--------------G-VHDYR-GIEDFPKL 183 (197)
T ss_dssp CBGGGHHHHT---TCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTB--------------C-CCCCT-TGGGCSSC
T ss_pred cCcHhHHHHh---hCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCC--------------C-CcChH-HhccCCCC
Confidence 6654555554 44556668888887 77776 5777777777777663 2 33344 56778888
Q ss_pred CeeeccCccccc
Q 047943 175 RSVDLQSTEVEE 186 (479)
Q Consensus 175 ~~L~L~~~~i~~ 186 (479)
++|++++|.|.+
T Consensus 184 ~~L~l~~N~i~~ 195 (197)
T 4ezg_A 184 NQLYAFSQTIGG 195 (197)
T ss_dssp CEEEECBC----
T ss_pred CEEEeeCcccCC
Confidence 999988887653
No 107
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.52 E-value=4.7e-14 Score=131.41 Aligned_cols=81 Identities=21% Similarity=0.304 Sum_probs=39.7
Q ss_pred CCceeecCCCCCCCCCc-ccCCCCCCCEEEcCCCCCccCCccCCCCCCCCEEeCCCCcCCccChhhhcCCCchhHHHHHh
Q 047943 226 KLEDLSISGRRGLILPP-LLSGLSSLTKLVLTCCDVIEIPQDIGCLSSLELLFLCGNNFSKFTCKYQSTFTAEKTLLELL 304 (479)
Q Consensus 226 ~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~~i~~l~~L~~L~~~L 304 (479)
+|+.|++++|....++. .+..+++|+.|++++|.+.++|..+..+++|+.|+|++|.++.+|...+..+++|+.| ++
T Consensus 89 ~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L--~l 166 (229)
T 3e6j_A 89 QLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHA--YL 166 (229)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEE--EC
T ss_pred CcCEEECCCCcCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEE--Ee
Confidence 33334444444333332 2344555555555555555555555555555555555555555543334455555555 44
Q ss_pred hhhh
Q 047943 305 QYAT 308 (479)
Q Consensus 305 ~~n~ 308 (479)
++|.
T Consensus 167 ~~N~ 170 (229)
T 3e6j_A 167 FGNP 170 (229)
T ss_dssp TTSC
T ss_pred eCCC
Confidence 4443
No 108
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.52 E-value=1.7e-14 Score=137.37 Aligned_cols=80 Identities=21% Similarity=0.152 Sum_probs=65.8
Q ss_pred CCCceeecCCCCCCCCCcccCCCCCCCEEEcCCCCCccCCccCCCCCCCCEEeCCCCcCCccChhhhcCCCchhHHHHHh
Q 047943 225 DKLEDLSISGRRGLILPPLLSGLSSLTKLVLTCCDVIEIPQDIGCLSSLELLFLCGNNFSKFTCKYQSTFTAEKTLLELL 304 (479)
Q Consensus 225 ~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~~i~~l~~L~~L~~~L 304 (479)
++|+.|++++|....++. +..+++|+.|++++|.+.+++ .++.+++|+.|++++|.++.++ .+..+++|+.| ++
T Consensus 106 ~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~~--~l~~l~~L~~L--~l 179 (263)
T 1xeu_A 106 ACLSRLFLDNNELRDTDS-LIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNTG--GLTRLKKVNWI--DL 179 (263)
T ss_dssp SSCCEEECCSSCCSBSGG-GTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBCT--TSTTCCCCCEE--EE
T ss_pred CcccEEEccCCccCCChh-hcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcchH--HhccCCCCCEE--eC
Confidence 567777787788766654 788899999999999998876 5788899999999999988875 78888899999 88
Q ss_pred hhhhhh
Q 047943 305 QYATVI 310 (479)
Q Consensus 305 ~~n~~~ 310 (479)
++|.+.
T Consensus 180 ~~N~~~ 185 (263)
T 1xeu_A 180 TGQKCV 185 (263)
T ss_dssp EEEEEE
T ss_pred CCCccc
Confidence 777664
No 109
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.52 E-value=1.1e-13 Score=126.56 Aligned_cols=155 Identities=21% Similarity=0.270 Sum_probs=88.1
Q ss_pred ccCceEEEecCCCCCCCCCC-C-CCCCceEEECCCCCCcccccc-cCCCCCCcEEEccCCCCCCCCC-C-CCCCCCCcEE
Q 047943 15 PEELRYLHWYEYPLKTLPSN-F-EPENLLELNLPYSKIETIWEV-KKEAPKLKYINLHNSQYLTGMP-D-LSETPNLERL 89 (479)
Q Consensus 15 ~~~Lr~L~~~~~~l~~lp~~-~-~~~~L~~L~L~~s~i~~l~~~-~~~l~~L~~L~Ls~~~~l~~~p-~-l~~l~~L~~L 89 (479)
+.+|++|+++++.++.+|.. | .+++|++|++++|+++.++.. +..+++|++|++++|... .++ . +.++++|++|
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L 105 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ-SLPNGVFDKLTQLKEL 105 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEE
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCC-ccCHhHhcCccCCCEE
Confidence 44667777777766666653 3 566777777777766666543 456677777777766433 333 2 5666677777
Q ss_pred eecCCCCCCCCCccccccCCccccceeeccCCCceecCcc-ccCCCCCCEEeccCCCCCCCCCEEecCCCCCCCccchhh
Q 047943 90 NILNCTNLAYIPSCIHNFNNLRSVIGLCLRNTAIEEVPSS-IESLTKLEKLDLSYCTRLKGLCKLDLGYCSKFECFPEII 168 (479)
Q Consensus 90 ~L~~c~~l~~~p~~l~~l~~L~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~c~~L~~L~~L~L~~c~~l~~~p~~~ 168 (479)
++++|......+..+.+ ++.|+.|++++|.+..++.. +..+++|+.|++++ |...
T Consensus 106 ~L~~N~l~~~~~~~~~~---l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~--------------N~~~------- 161 (208)
T 2o6s_A 106 ALNTNQLQSLPDGVFDK---LTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHD--------------NPWD------- 161 (208)
T ss_dssp ECCSSCCCCCCTTTTTT---CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS--------------CCBC-------
T ss_pred EcCCCcCcccCHhHhcc---CCcCCEEECCCCccceeCHHHhccCCCccEEEecC--------------CCee-------
Confidence 77665433222222333 33444566666666655543 44455555555544 3222
Q ss_pred hccccCCeeeccCccccc-cCcccccc
Q 047943 169 EKMERLRSVDLQSTEVEE-LPSSMENL 194 (479)
Q Consensus 169 ~~l~~L~~L~L~~~~i~~-lp~~i~~l 194 (479)
+.+++|++|+++.|.+.+ +|.+++.+
T Consensus 162 ~~~~~l~~L~~~~n~~~g~ip~~~~~l 188 (208)
T 2o6s_A 162 CTCPGIRYLSEWINKHSGVVRNSAGSV 188 (208)
T ss_dssp CCTTTTHHHHHHHHHCTTTBBCTTSSB
T ss_pred cCCCCHHHHHHHHHhCCceeeccCccc
Confidence 234467777777776664 66655544
No 110
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.51 E-value=6.9e-14 Score=128.05 Aligned_cols=170 Identities=16% Similarity=0.262 Sum_probs=122.6
Q ss_pred eEEEecCCCCCCCCCCCCCCCceEEECCCCCCcccccc-cCCCCCCcEEEccCCCCCCCCC-C-CCCCCCCcEEeecCCC
Q 047943 19 RYLHWYEYPLKTLPSNFEPENLLELNLPYSKIETIWEV-KKEAPKLKYINLHNSQYLTGMP-D-LSETPNLERLNILNCT 95 (479)
Q Consensus 19 r~L~~~~~~l~~lp~~~~~~~L~~L~L~~s~i~~l~~~-~~~l~~L~~L~Ls~~~~l~~~p-~-l~~l~~L~~L~L~~c~ 95 (479)
+.++..++.++.+|..+ +++|++|++++++++.++.. +..+++|+.|++++|.. +.++ . +..+++|++|++++|.
T Consensus 10 ~~v~c~~~~l~~~p~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI-PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKL-QSLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEecCCCccCCCCCC-CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCcc-CccChhhcCCCCCcCEEECCCCc
Confidence 56777888888998765 56999999999999988754 68999999999999865 4555 3 7899999999999976
Q ss_pred CCCCCCccccccCCccccceeeccCCCceecCcc-ccCCCCCCEEeccCCCCCCCCCEEecCCCCCCCccchhhhccccC
Q 047943 96 NLAYIPSCIHNFNNLRSVIGLCLRNTAIEEVPSS-IESLTKLEKLDLSYCTRLKGLCKLDLGYCSKFECFPEIIEKMERL 174 (479)
Q Consensus 96 ~l~~~p~~l~~l~~L~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~c~~L~~L~~L~L~~c~~l~~~p~~~~~l~~L 174 (479)
.. .++.. .+..++.|++|++++|.+..++.. ++.+++|+.|++++ |...+..+..+..+++|
T Consensus 88 l~-~~~~~--~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~--------------N~l~~~~~~~~~~l~~L 150 (208)
T 2o6s_A 88 LQ-SLPNG--VFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQ--------------NQLKSVPDGVFDRLTSL 150 (208)
T ss_dssp CC-CCCTT--TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS--------------SCCSCCCTTTTTTCTTC
T ss_pred CC-ccCHh--HhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCC--------------CccceeCHHHhccCCCc
Confidence 44 44432 134455677799999999988765 56677777766665 33333333457889999
Q ss_pred CeeeccCcccc-c------cCcccccccCCCCCCCCCCCCCC
Q 047943 175 RSVDLQSTEVE-E------LPSSMENLEGLKDLPDSLPNLKS 209 (479)
Q Consensus 175 ~~L~L~~~~i~-~------lp~~i~~l~~L~~lp~~l~~l~~ 209 (479)
++|++++|.+. . +..+...+. ..+|..++.+..
T Consensus 151 ~~L~l~~N~~~~~~~~l~~L~~~~n~~~--g~ip~~~~~l~~ 190 (208)
T 2o6s_A 151 QYIWLHDNPWDCTCPGIRYLSEWINKHS--GVVRNSAGSVAP 190 (208)
T ss_dssp CEEECCSCCBCCCTTTTHHHHHHHHHCT--TTBBCTTSSBCT
T ss_pred cEEEecCCCeecCCCCHHHHHHHHHhCC--ceeeccCccccC
Confidence 99999998653 3 323333322 246767766654
No 111
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.51 E-value=4e-16 Score=164.64 Aligned_cols=196 Identities=18% Similarity=0.187 Sum_probs=145.8
Q ss_pred cCCccccceeeccCCCceecCccccCCCCCCEEeccCCCCCCCCCEEecCCCCCCCccchhhhccccCCeee-ccCcccc
Q 047943 107 FNNLRSVIGLCLRNTAIEEVPSSIESLTKLEKLDLSYCTRLKGLCKLDLGYCSKFECFPEIIEKMERLRSVD-LQSTEVE 185 (479)
Q Consensus 107 l~~L~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~L~~L~~L~L~~c~~l~~~p~~~~~l~~L~~L~-L~~~~i~ 185 (479)
+...++|+.|+|++|.+..+|.+++.+++|+.|+++++..+..+.. .+..+...+..|+.++++++|+.|+ ++.+.+.
T Consensus 345 ~~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~-ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~ 423 (567)
T 1dce_A 345 SATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIIL-LMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD 423 (567)
T ss_dssp CSTTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH-HHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred cccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHH-HHHhcccccCCHHHHHHHHhcccCcchhhcccc
Confidence 4556677789999999999999999999999999866421111110 0111233456778888888888888 6666544
Q ss_pred ccCcccccccCCCCCCCCCCCCCCCCeeecCC-----CccccccCCCceeecCCCCCCCCCcccCCCCCCCEEEcCCCCC
Q 047943 186 ELPSSMENLEGLKDLPDSLPNLKSLQFLNVER-----LFSIADLDKLEDLSISGRRGLILPPLLSGLSSLTKLVLTCCDV 260 (479)
Q Consensus 186 ~lp~~i~~l~~L~~lp~~l~~l~~L~~L~l~~-----l~~l~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~l 260 (479)
.++...-.-..+..+|. ..|+.|++++ ++.++.+++|+.|++++|....+|..++.+++|+.|+|++|.+
T Consensus 424 ~L~~l~l~~n~i~~l~~-----~~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l 498 (567)
T 1dce_A 424 DLRSKFLLENSVLKMEY-----ADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNAL 498 (567)
T ss_dssp HHHHHHHHHHHHHHHHH-----TTCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred hhhhhhhhcccccccCc-----cCceEEEecCCCCCCCcCccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCC
Confidence 43321000000000110 2377787776 4567888999999999999889999999999999999999999
Q ss_pred ccCCccCCCCCCCCEEeCCCCcCCcc--ChhhhcCCCchhHHHHHhhhhhhhhc
Q 047943 261 IEIPQDIGCLSSLELLFLCGNNFSKF--TCKYQSTFTAEKTLLELLQYATVITR 312 (479)
Q Consensus 261 ~~lp~~l~~l~~L~~L~Ls~n~l~~l--p~~~i~~l~~L~~L~~~L~~n~~~~~ 312 (479)
+++| .++.+++|+.|+|++|.++.+ | ..++.+++|+.| ++++|.+.+.
T Consensus 499 ~~lp-~l~~l~~L~~L~Ls~N~l~~~~~p-~~l~~l~~L~~L--~L~~N~l~~~ 548 (567)
T 1dce_A 499 ENVD-GVANLPRLQELLLCNNRLQQSAAI-QPLVSCPRLVLL--NLQGNSLCQE 548 (567)
T ss_dssp CCCG-GGTTCSSCCEEECCSSCCCSSSTT-GGGGGCTTCCEE--ECTTSGGGGS
T ss_pred CCCc-ccCCCCCCcEEECCCCCCCCCCCc-HHHhcCCCCCEE--EecCCcCCCC
Confidence 9998 899999999999999999988 7 899999999999 9999887644
No 112
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.50 E-value=1e-13 Score=138.18 Aligned_cols=83 Identities=22% Similarity=0.280 Sum_probs=48.7
Q ss_pred CCCceeecCCCCCCCC-CcccCCCCCCCEEEcCCCCCccCCccC----CCCCCCCEEeCCCCcCCccChhhhcCCCch--
Q 047943 225 DKLEDLSISGRRGLIL-PPLLSGLSSLTKLVLTCCDVIEIPQDI----GCLSSLELLFLCGNNFSKFTCKYQSTFTAE-- 297 (479)
Q Consensus 225 ~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~L~~~~l~~lp~~l----~~l~~L~~L~Ls~n~l~~lp~~~i~~l~~L-- 297 (479)
++|+.|++++|....+ |..+.++++|+.|+|++|.+..+|..+ ..+++|+.|+|++|.|+.+|...+..++.+
T Consensus 112 ~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l 191 (361)
T 2xot_A 112 QALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVK 191 (361)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHH
T ss_pred cCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhc
Confidence 3444444444553322 445566677777777777777666543 456777777777777777764556666653
Q ss_pred hHHHHHhhhhhh
Q 047943 298 KTLLELLQYATV 309 (479)
Q Consensus 298 ~~L~~~L~~n~~ 309 (479)
+.| ++++|.+
T Consensus 192 ~~l--~l~~N~~ 201 (361)
T 2xot_A 192 NGL--YLHNNPL 201 (361)
T ss_dssp TTE--ECCSSCE
T ss_pred ceE--EecCCCc
Confidence 556 6666554
No 113
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.49 E-value=1.2e-13 Score=127.82 Aligned_cols=150 Identities=22% Similarity=0.312 Sum_probs=80.2
Q ss_pred cEEeecCCCCCCCCCccccccCCccccceeeccCCCceecCc-cccCCCCCCEEeccCCCCCCCCCEEecCCCCCCCccc
Q 047943 87 ERLNILNCTNLAYIPSCIHNFNNLRSVIGLCLRNTAIEEVPS-SIESLTKLEKLDLSYCTRLKGLCKLDLGYCSKFECFP 165 (479)
Q Consensus 87 ~~L~L~~c~~l~~~p~~l~~l~~L~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~c~~L~~L~~L~L~~c~~l~~~p 165 (479)
+.+++++ ..+..+|..+. +.|+.|++++|.+..++. .+..+++|+.|++++ |......|
T Consensus 14 ~~v~c~~-~~l~~iP~~l~-----~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~--------------N~i~~~~~ 73 (220)
T 2v9t_B 14 NIVDCRG-KGLTEIPTNLP-----ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSN--------------NQISELAP 73 (220)
T ss_dssp TEEECTT-SCCSSCCSSCC-----TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCS--------------SCCCEECT
T ss_pred CEEEcCC-CCcCcCCCccC-----cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCC--------------CcCCCcCH
Confidence 4555555 34455555432 345556666666666554 344444444444443 33333335
Q ss_pred hhhhccccCCeeeccCccccccCcccccccCCCCCCCCCCCCCCCCeeecCCCccccccCCCceeecCCCCCCCC-Cccc
Q 047943 166 EIIEKMERLRSVDLQSTEVEELPSSMENLEGLKDLPDSLPNLKSLQFLNVERLFSIADLDKLEDLSISGRRGLIL-PPLL 244 (479)
Q Consensus 166 ~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~lp~~l~~l~~L~~L~l~~l~~l~~l~~L~~L~l~~~~~~~l-p~~~ 244 (479)
..+.++++|++|++++|.++.+|..+ +.++++|+.|++++|....+ |..+
T Consensus 74 ~~~~~l~~L~~L~Ls~N~l~~l~~~~-----------------------------f~~l~~L~~L~L~~N~l~~~~~~~~ 124 (220)
T 2v9t_B 74 DAFQGLRSLNSLVLYGNKITELPKSL-----------------------------FEGLFSLQLLLLNANKINCLRVDAF 124 (220)
T ss_dssp TTTTTCSSCCEEECCSSCCCCCCTTT-----------------------------TTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred HHhhCCcCCCEEECCCCcCCccCHhH-----------------------------ccCCCCCCEEECCCCCCCEeCHHHc
Confidence 56666666666666666666554321 12334444555555554333 3445
Q ss_pred CCCCCCCEEEcCCCCCccCC-ccCCCCCCCCEEeCCCCcCCc
Q 047943 245 SGLSSLTKLVLTCCDVIEIP-QDIGCLSSLELLFLCGNNFSK 285 (479)
Q Consensus 245 ~~l~~L~~L~L~~~~l~~lp-~~l~~l~~L~~L~Ls~n~l~~ 285 (479)
..+++|+.|+|++|.+.+++ ..+..+++|+.|+|++|.+..
T Consensus 125 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 125 QDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 56666666666666666633 335556666666666665543
No 114
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.46 E-value=1e-12 Score=122.24 Aligned_cols=149 Identities=20% Similarity=0.256 Sum_probs=108.7
Q ss_pred CceEEEecCCCCCCCCCCCCCCCceEEECCCCCCccc-ccccCCCCCCcEEEccCCCCCCCCC-C-CCCCCCCcEEeecC
Q 047943 17 ELRYLHWYEYPLKTLPSNFEPENLLELNLPYSKIETI-WEVKKEAPKLKYINLHNSQYLTGMP-D-LSETPNLERLNILN 93 (479)
Q Consensus 17 ~Lr~L~~~~~~l~~lp~~~~~~~L~~L~L~~s~i~~l-~~~~~~l~~L~~L~Ls~~~~l~~~p-~-l~~l~~L~~L~L~~ 93 (479)
..+.++.++..++.+|..+ +++|++|+|++|+++.+ +..+..+++|+.|+|++|.. ..+| . +..+++|++|+|++
T Consensus 20 s~~~v~c~~~~l~~ip~~~-~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l-~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 20 SGTTVDCRSKRHASVPAGI-PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp ETTEEECTTSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCS
T ss_pred eCCEeEccCCCcCccCCCC-CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCC-CCcChhhcccCCCcCEEECCC
Confidence 3456788888888888765 48899999999999877 56678899999999999874 5555 3 68889999999998
Q ss_pred CCCCCCCCc-cccccCCccccceeeccCCCceecCccccCCCCCCEEeccCCCCCCCCCEEecCCCCCCCccc-hhhhcc
Q 047943 94 CTNLAYIPS-CIHNFNNLRSVIGLCLRNTAIEEVPSSIESLTKLEKLDLSYCTRLKGLCKLDLGYCSKFECFP-EIIEKM 171 (479)
Q Consensus 94 c~~l~~~p~-~l~~l~~L~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~L~~L~~L~L~~c~~l~~~p-~~~~~l 171 (479)
|... .++. .+. .++.|+.|++++|.+..+|..+..+++|+.|+++++ .+..+| ..+..+
T Consensus 98 N~l~-~l~~~~~~---~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N---------------~l~~~~~~~~~~l 158 (229)
T 3e6j_A 98 NQLT-VLPSAVFD---RLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQN---------------QLKSIPHGAFDRL 158 (229)
T ss_dssp SCCC-CCCTTTTT---TCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSS---------------CCCCCCTTTTTTC
T ss_pred CcCC-ccChhHhC---cchhhCeEeccCCcccccCcccccCCCCCEEECCCC---------------cCCccCHHHHhCC
Confidence 7543 4433 334 344566688888888888888877777777777662 233333 456677
Q ss_pred ccCCeeeccCccccc
Q 047943 172 ERLRSVDLQSTEVEE 186 (479)
Q Consensus 172 ~~L~~L~L~~~~i~~ 186 (479)
++|+.|++++|.+..
T Consensus 159 ~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 159 SSLTHAYLFGNPWDC 173 (229)
T ss_dssp TTCCEEECTTSCBCT
T ss_pred CCCCEEEeeCCCccC
Confidence 788888888877653
No 115
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.46 E-value=2.8e-13 Score=125.37 Aligned_cols=149 Identities=23% Similarity=0.272 Sum_probs=74.0
Q ss_pred cEEeecCCCCCCCCCccccccCCccccceeeccCCCceecCc--cccCCCCCCEEeccCCCCCCCCCEEecCCCCCCCcc
Q 047943 87 ERLNILNCTNLAYIPSCIHNFNNLRSVIGLCLRNTAIEEVPS--SIESLTKLEKLDLSYCTRLKGLCKLDLGYCSKFECF 164 (479)
Q Consensus 87 ~~L~L~~c~~l~~~p~~l~~l~~L~~L~~L~L~~~~i~~lp~--~i~~l~~L~~L~L~~c~~L~~L~~L~L~~c~~l~~~ 164 (479)
+.++++++ .+..+|..+.. .+++|++++|.+..+++ .++.+++|+.|++++ |......
T Consensus 14 ~~l~~s~n-~l~~iP~~~~~-----~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~--------------N~i~~i~ 73 (220)
T 2v70_A 14 TTVDCSNQ-KLNKIPEHIPQ-----YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSN--------------NKITDIE 73 (220)
T ss_dssp TEEECCSS-CCSSCCSCCCT-----TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCS--------------SCCCEEC
T ss_pred CEeEeCCC-CcccCccCCCC-----CCCEEEcCCCcCCccCchhhhccCCCCCEEECCC--------------CcCCEEC
Confidence 35666653 34445544322 23456666666655532 244444444444443 2222222
Q ss_pred chhhhccccCCeeeccCccccccCcccccccCCCCCCCCCCCCCCCCeeecCCCccccccCCCceeecCCCCCCCC-Ccc
Q 047943 165 PEIIEKMERLRSVDLQSTEVEELPSSMENLEGLKDLPDSLPNLKSLQFLNVERLFSIADLDKLEDLSISGRRGLIL-PPL 243 (479)
Q Consensus 165 p~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~lp~~l~~l~~L~~L~l~~l~~l~~l~~L~~L~l~~~~~~~l-p~~ 243 (479)
+..+.++++|++|++++|.+..++.. .+..+++|++|++++|....+ |..
T Consensus 74 ~~~~~~l~~L~~L~Ls~N~l~~~~~~-----------------------------~~~~l~~L~~L~Ls~N~l~~~~~~~ 124 (220)
T 2v70_A 74 EGAFEGASGVNEILLTSNRLENVQHK-----------------------------MFKGLESLKTLMLRSNRITCVGNDS 124 (220)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCCGG-----------------------------GGTTCSSCCEEECTTSCCCCBCTTS
T ss_pred HHHhCCCCCCCEEECCCCccCccCHh-----------------------------HhcCCcCCCEEECCCCcCCeECHhH
Confidence 23455555666666666655554331 122334444555555553333 444
Q ss_pred cCCCCCCCEEEcCCCCCccC-CccCCCCCCCCEEeCCCCcCC
Q 047943 244 LSGLSSLTKLVLTCCDVIEI-PQDIGCLSSLELLFLCGNNFS 284 (479)
Q Consensus 244 ~~~l~~L~~L~L~~~~l~~l-p~~l~~l~~L~~L~Ls~n~l~ 284 (479)
+..+++|+.|+|++|.+.++ |..+..+++|+.|++++|.+.
T Consensus 125 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 125 FIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp STTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred cCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 55556666666666666553 555556666666666666554
No 116
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.46 E-value=6.8e-13 Score=122.70 Aligned_cols=150 Identities=17% Similarity=0.214 Sum_probs=110.7
Q ss_pred ceEEEecCCCCCCCCCCCCCCCceEEECCCCCCcccc--cccCCCCCCcEEEccCCCCCCCCC-CCCCCCCCcEEeecCC
Q 047943 18 LRYLHWYEYPLKTLPSNFEPENLLELNLPYSKIETIW--EVKKEAPKLKYINLHNSQYLTGMP-DLSETPNLERLNILNC 94 (479)
Q Consensus 18 Lr~L~~~~~~l~~lp~~~~~~~L~~L~L~~s~i~~l~--~~~~~l~~L~~L~Ls~~~~l~~~p-~l~~l~~L~~L~L~~c 94 (479)
-+.++++++.++.+|..+ +..+++|+|++|+++.++ ..+..+++|+.|+|++|......+ .|.++++|++|+|++|
T Consensus 13 ~~~l~~s~n~l~~iP~~~-~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 13 GTTVDCSNQKLNKIPEHI-PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp TTEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CCEeEeCCCCcccCccCC-CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 357889999999999765 456789999999999874 347889999999999987544444 5889999999999997
Q ss_pred CCCCCCCccccccCCccccceeeccCCCceec-CccccCCCCCCEEeccCCCCCCCCCEEecCCCCCCCccchhhhcccc
Q 047943 95 TNLAYIPSCIHNFNNLRSVIGLCLRNTAIEEV-PSSIESLTKLEKLDLSYCTRLKGLCKLDLGYCSKFECFPEIIEKMER 173 (479)
Q Consensus 95 ~~l~~~p~~l~~l~~L~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~c~~L~~L~~L~L~~c~~l~~~p~~~~~l~~ 173 (479)
......+..+.+ ++.|++|++++|.+..+ |..+..+++|+.|++++ |......|..+..+++
T Consensus 92 ~l~~~~~~~~~~---l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~--------------N~l~~~~~~~~~~l~~ 154 (220)
T 2v70_A 92 RLENVQHKMFKG---LESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYD--------------NQITTVAPGAFDTLHS 154 (220)
T ss_dssp CCCCCCGGGGTT---CSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTT--------------SCCCCBCTTTTTTCTT
T ss_pred ccCccCHhHhcC---CcCCCEEECCCCcCCeECHhHcCCCccCCEEECCC--------------CcCCEECHHHhcCCCC
Confidence 654444444544 44556688988888876 45566666666666554 4444444677888888
Q ss_pred CCeeeccCcccc
Q 047943 174 LRSVDLQSTEVE 185 (479)
Q Consensus 174 L~~L~L~~~~i~ 185 (479)
|++|++++|.+.
T Consensus 155 L~~L~L~~N~l~ 166 (220)
T 2v70_A 155 LSTLNLLANPFN 166 (220)
T ss_dssp CCEEECCSCCEE
T ss_pred CCEEEecCcCCc
Confidence 888888888765
No 117
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.44 E-value=1.1e-12 Score=121.18 Aligned_cols=149 Identities=19% Similarity=0.230 Sum_probs=98.4
Q ss_pred eEEEecCCCCCCCCCCCCCCCceEEECCCCCCccccc-ccCCCCCCcEEEccCCCCCCCCC-CCCCCCCCcEEeecCCCC
Q 047943 19 RYLHWYEYPLKTLPSNFEPENLLELNLPYSKIETIWE-VKKEAPKLKYINLHNSQYLTGMP-DLSETPNLERLNILNCTN 96 (479)
Q Consensus 19 r~L~~~~~~l~~lp~~~~~~~L~~L~L~~s~i~~l~~-~~~~l~~L~~L~Ls~~~~l~~~p-~l~~l~~L~~L~L~~c~~ 96 (479)
+.++..++.++.+|..+. ++|++|++++|+++.++. .+..+++|+.|+|++|......| .|.++++|++|+|++|..
T Consensus 14 ~~v~c~~~~l~~iP~~l~-~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l 92 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP-ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI 92 (220)
T ss_dssp TEEECTTSCCSSCCSSCC-TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCC
T ss_pred CEEEcCCCCcCcCCCccC-cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcC
Confidence 567788888888887653 688888888888887764 67788888888888886554445 578888888888888643
Q ss_pred CCCCCccccccCCccccceeeccCCCceecC-ccccCCCCCCEEeccCCCCCCCCCEEecCCCCCCCccchhhhccccCC
Q 047943 97 LAYIPSCIHNFNNLRSVIGLCLRNTAIEEVP-SSIESLTKLEKLDLSYCTRLKGLCKLDLGYCSKFECFPEIIEKMERLR 175 (479)
Q Consensus 97 l~~~p~~l~~l~~L~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~c~~L~~L~~L~L~~c~~l~~~p~~~~~l~~L~ 175 (479)
..+|..+ +..++.|+.|+|++|.+..++ ..+..+++|+.|++++ |......+..+..+++|+
T Consensus 93 -~~l~~~~--f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~--------------N~l~~~~~~~~~~l~~L~ 155 (220)
T 2v9t_B 93 -TELPKSL--FEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYD--------------NKLQTIAKGTFSPLRAIQ 155 (220)
T ss_dssp -CCCCTTT--TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS--------------SCCSCCCTTTTTTCTTCC
T ss_pred -CccCHhH--ccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCC--------------CcCCEECHHHHhCCCCCC
Confidence 3444332 223444555777777777653 3455555555555544 333222334566677777
Q ss_pred eeeccCcccc
Q 047943 176 SVDLQSTEVE 185 (479)
Q Consensus 176 ~L~L~~~~i~ 185 (479)
+|++++|.+.
T Consensus 156 ~L~L~~N~~~ 165 (220)
T 2v9t_B 156 TMHLAQNPFI 165 (220)
T ss_dssp EEECCSSCEE
T ss_pred EEEeCCCCcC
Confidence 7777777654
No 118
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.42 E-value=1.1e-12 Score=130.62 Aligned_cols=151 Identities=22% Similarity=0.286 Sum_probs=99.7
Q ss_pred eEEEecCCCCCCCCCCCCCCCceEEECCCCCCcccccc-cC-CCCCCcEEEccCCCCCCCCC-CCCCCCCCcEEeecCCC
Q 047943 19 RYLHWYEYPLKTLPSNFEPENLLELNLPYSKIETIWEV-KK-EAPKLKYINLHNSQYLTGMP-DLSETPNLERLNILNCT 95 (479)
Q Consensus 19 r~L~~~~~~l~~lp~~~~~~~L~~L~L~~s~i~~l~~~-~~-~l~~L~~L~Ls~~~~l~~~p-~l~~l~~L~~L~L~~c~ 95 (479)
+.+++.++.++.+|..+ +..++.|+|++|+++.++.. +. .+++|+.|+|++|......+ .|.++++|++|+|++|.
T Consensus 21 ~~l~c~~~~l~~iP~~~-~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 99 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSL-PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH 99 (361)
T ss_dssp TEEECCSSCCSSCCSSC-CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CEEEeCCCCcCccCccC-CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCc
Confidence 57788888888888755 35678888888888877654 44 78888888888876443333 47888888888888865
Q ss_pred CCCCCCccccccCCccccceeeccCCCceec-CccccCCCCCCEEeccCCCCCCCCCEEecCCCCCCCccchhh----hc
Q 047943 96 NLAYIPSCIHNFNNLRSVIGLCLRNTAIEEV-PSSIESLTKLEKLDLSYCTRLKGLCKLDLGYCSKFECFPEII----EK 170 (479)
Q Consensus 96 ~l~~~p~~l~~l~~L~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~c~~L~~L~~L~L~~c~~l~~~p~~~----~~ 170 (479)
.....+..+. .++.|+.|+|++|.+..+ |..+..+++|+.|+|+++ .+..+|... ..
T Consensus 100 l~~~~~~~~~---~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N---------------~l~~l~~~~~~~~~~ 161 (361)
T 2xot_A 100 LHTLDEFLFS---DLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQN---------------QISRFPVELIKDGNK 161 (361)
T ss_dssp CCEECTTTTT---TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS---------------CCCSCCGGGTC----
T ss_pred CCcCCHHHhC---CCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCC---------------cCCeeCHHHhcCccc
Confidence 4322223344 445566688888888776 455777777777777662 233344332 45
Q ss_pred cccCCeeeccCccccccC
Q 047943 171 MERLRSVDLQSTEVEELP 188 (479)
Q Consensus 171 l~~L~~L~L~~~~i~~lp 188 (479)
+++|+.|++++|.+..+|
T Consensus 162 l~~L~~L~L~~N~l~~l~ 179 (361)
T 2xot_A 162 LPKLMLLDLSSNKLKKLP 179 (361)
T ss_dssp CTTCCEEECCSSCCCCCC
T ss_pred CCcCCEEECCCCCCCccC
Confidence 666777777777666655
No 119
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.42 E-value=5.2e-13 Score=117.79 Aligned_cols=135 Identities=21% Similarity=0.347 Sum_probs=82.8
Q ss_pred CCCceEEECCCCCCc--ccccccCCCCCCcEEEccCCCCCCCCCCCCCCCCCcEEeecCCCCCCCCCccccccCCccccc
Q 047943 37 PENLLELNLPYSKIE--TIWEVKKEAPKLKYINLHNSQYLTGMPDLSETPNLERLNILNCTNLAYIPSCIHNFNNLRSVI 114 (479)
Q Consensus 37 ~~~L~~L~L~~s~i~--~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c~~l~~~p~~l~~l~~L~~L~ 114 (479)
+++|++|++++|++. .++..+..+++|+.|++++|. ++.++.+..+++|++|++++|.....+|..+.++. .|+
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~---~L~ 98 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLP---NLT 98 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCT---TCC
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCChhhhccCCCCCEEECcCCcCchHHHHHHhhCC---CCC
Confidence 455666666666665 566555666666666666665 33335566666777777766654444454444433 344
Q ss_pred eeeccCCCceecC--ccccCCCCCCEEeccCCCCCCCCCEEecCCCCCCCccch----hhhccccCCeeeccCccccccC
Q 047943 115 GLCLRNTAIEEVP--SSIESLTKLEKLDLSYCTRLKGLCKLDLGYCSKFECFPE----IIEKMERLRSVDLQSTEVEELP 188 (479)
Q Consensus 115 ~L~L~~~~i~~lp--~~i~~l~~L~~L~L~~c~~L~~L~~L~L~~c~~l~~~p~----~~~~l~~L~~L~L~~~~i~~lp 188 (479)
.|++++|.+..+| ..++.+++|+.|++++ |. +..+|. .+..+++|++|++++|.+.++|
T Consensus 99 ~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~--------------N~-l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 163 (168)
T 2ell_A 99 HLNLSGNKLKDISTLEPLKKLECLKSLDLFN--------------CE-VTNLNDYRESVFKLLPQLTYLDGYDREDQEAP 163 (168)
T ss_dssp EEECBSSSCCSSGGGGGGSSCSCCCEEECCS--------------SG-GGTSTTHHHHHHTTCSSCCEETTEETTSCBCC
T ss_pred EEeccCCccCcchhHHHHhcCCCCCEEEeeC--------------Cc-CcchHHHHHHHHHhCccCcEecCCCCChhhcc
Confidence 4677777766655 4566666666666555 22 333343 6777888888888888887776
Q ss_pred cc
Q 047943 189 SS 190 (479)
Q Consensus 189 ~~ 190 (479)
..
T Consensus 164 ~~ 165 (168)
T 2ell_A 164 DS 165 (168)
T ss_dssp SS
T ss_pred cc
Confidence 53
No 120
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.38 E-value=9.9e-13 Score=142.81 Aligned_cols=119 Identities=23% Similarity=0.226 Sum_probs=83.1
Q ss_pred CCccchhhhccccCCeeeccCccccccCcccccccCCCCCCCCCCCCCCCCeeecCCCccccccCCCceeecCCCCCCCC
Q 047943 161 FECFPEIIEKMERLRSVDLQSTEVEELPSSMENLEGLKDLPDSLPNLKSLQFLNVERLFSIADLDKLEDLSISGRRGLIL 240 (479)
Q Consensus 161 l~~~p~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~lp~~l~~l~~L~~L~l~~l~~l~~l~~L~~L~l~~~~~~~l 240 (479)
+..+|..+.++++|++|+|++|.+..+|..++ .+++|+.|++++|....+
T Consensus 236 l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~------------------------------~l~~L~~L~Ls~N~l~~l 285 (727)
T 4b8c_D 236 IFNISANIFKYDFLTRLYLNGNSLTELPAEIK------------------------------NLSNLRVLDLSHNRLTSL 285 (727)
T ss_dssp CSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGG------------------------------GGTTCCEEECTTSCCSSC
T ss_pred CCCCChhhcCCCCCCEEEeeCCcCcccChhhh------------------------------CCCCCCEEeCcCCcCCcc
Confidence 33566666677777888887777777665443 334566666666776677
Q ss_pred CcccCCCCCCCEEEcCCCCCccCCccCCCCCCCCEEeCCCCcCCccChhhhcCCCc-hhHHHHHhhhhhhhh
Q 047943 241 PPLLSGLSSLTKLVLTCCDVIEIPQDIGCLSSLELLFLCGNNFSKFTCKYQSTFTA-EKTLLELLQYATVIT 311 (479)
Q Consensus 241 p~~~~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~~i~~l~~-L~~L~~~L~~n~~~~ 311 (479)
|..+..+++|++|+|++|.+..+|..++.+++|+.|+|++|.|+..+...+..+.. +..+ ++++|.+..
T Consensus 286 p~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l--~l~~N~l~~ 355 (727)
T 4b8c_D 286 PAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIF--YLRDNRPEI 355 (727)
T ss_dssp CSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHH--HHHHCCCCC
T ss_pred ChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHH--hhccCcccC
Confidence 87788888888889988888888888888889999999998887544255543321 1224 677776643
No 121
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.35 E-value=1.8e-13 Score=148.69 Aligned_cols=133 Identities=17% Similarity=0.207 Sum_probs=49.2
Q ss_pred CCceEEECCCCCCcccccccCCCCCCcEEEccCCC----CCCCCC-CCCCCCCCcEEeecCCCCCCCCCccccccCCccc
Q 047943 38 ENLLELNLPYSKIETIWEVKKEAPKLKYINLHNSQ----YLTGMP-DLSETPNLERLNILNCTNLAYIPSCIHNFNNLRS 112 (479)
Q Consensus 38 ~~L~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~----~l~~~p-~l~~l~~L~~L~L~~c~~l~~~p~~l~~l~~L~~ 112 (479)
+.++.|+|.++.+...+.......+|+.+.+.... .+...+ .+..+++|+.|+|++|.. ..+|..+.++ +.
T Consensus 173 ~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l-~~l~~~~~~l---~~ 248 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQI-FNISANIFKY---DF 248 (727)
T ss_dssp -------------------------------------------------CCCCCCEEECTTSCC-SCCCGGGGGC---CS
T ss_pred CccceEEeeCCCCCcchhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCC-CCCChhhcCC---CC
Confidence 44555555555555544443333333333322211 111222 355566666666666543 3555554433 33
Q ss_pred cceeeccCCCceecCccccCCCCCCEEeccCCCCCCCCCEEecCCCCCCCccchhhhccccCCeeeccCccccccCc
Q 047943 113 VIGLCLRNTAIEEVPSSIESLTKLEKLDLSYCTRLKGLCKLDLGYCSKFECFPEIIEKMERLRSVDLQSTEVEELPS 189 (479)
Q Consensus 113 L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~L~~L~~L~L~~c~~l~~~p~~~~~l~~L~~L~L~~~~i~~lp~ 189 (479)
|+.|+|++|.+..+|..++.+++|+.|+|++ +.+..+|..++++++|++|+|++|.+..+|.
T Consensus 249 L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~---------------N~l~~lp~~~~~l~~L~~L~L~~N~l~~lp~ 310 (727)
T 4b8c_D 249 LTRLYLNGNSLTELPAEIKNLSNLRVLDLSH---------------NRLTSLPAELGSCFQLKYFYFFDNMVTTLPW 310 (727)
T ss_dssp CSCCBCTTSCCSCCCGGGGGGTTCCEEECTT---------------SCCSSCCSSGGGGTTCSEEECCSSCCCCCCS
T ss_pred CCEEEeeCCcCcccChhhhCCCCCCEEeCcC---------------CcCCccChhhcCCCCCCEEECCCCCCCccCh
Confidence 4446666666666666666666555555554 2233455555666666666666665554443
No 122
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.34 E-value=1.4e-12 Score=114.96 Aligned_cols=129 Identities=22% Similarity=0.236 Sum_probs=107.5
Q ss_pred CCccCceEEEecCCCCC--CCCCCC-CCCCceEEECCCCCCcccccccCCCCCCcEEEccCCCCCCCCCC-CCCCCCCcE
Q 047943 13 YLPEELRYLHWYEYPLK--TLPSNF-EPENLLELNLPYSKIETIWEVKKEAPKLKYINLHNSQYLTGMPD-LSETPNLER 88 (479)
Q Consensus 13 ~l~~~Lr~L~~~~~~l~--~lp~~~-~~~~L~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~ 88 (479)
..|.+|+.|+++++.++ .+|..+ .+++|++|++++|.++.+ ..+..+++|+.|++++|.....+|. +..+++|++
T Consensus 21 ~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp SCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred CCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 34568999999999998 899887 899999999999999988 8889999999999999987665775 456999999
Q ss_pred EeecCCCCCCCCCccccccCCccccceeeccCCCceecCc----cccCCCCCCEEeccCC
Q 047943 89 LNILNCTNLAYIPSCIHNFNNLRSVIGLCLRNTAIEEVPS----SIESLTKLEKLDLSYC 144 (479)
Q Consensus 89 L~L~~c~~l~~~p~~l~~l~~L~~L~~L~L~~~~i~~lp~----~i~~l~~L~~L~L~~c 144 (479)
|++++|. +..+|. +..+..++.|+.|++++|.+..+|. .+..+++|+.|++++|
T Consensus 100 L~Ls~N~-l~~~~~-~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n 157 (168)
T 2ell_A 100 LNLSGNK-LKDIST-LEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDR 157 (168)
T ss_dssp EECBSSS-CCSSGG-GGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred EeccCCc-cCcchh-HHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCC
Confidence 9999985 444431 2344556677789999999998887 7888999999988875
No 123
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.31 E-value=2.3e-12 Score=111.25 Aligned_cols=125 Identities=22% Similarity=0.214 Sum_probs=67.4
Q ss_pred ccCceEEEecCCCCC--CCCCCC-CCCCceEEECCCCCCcccccccCCCCCCcEEEccCCCCCCCCCC-CCCCCCCcEEe
Q 047943 15 PEELRYLHWYEYPLK--TLPSNF-EPENLLELNLPYSKIETIWEVKKEAPKLKYINLHNSQYLTGMPD-LSETPNLERLN 90 (479)
Q Consensus 15 ~~~Lr~L~~~~~~l~--~lp~~~-~~~~L~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~ 90 (479)
+.+++.|+++++.++ .+|..+ .+++|++|++++|+++.+ ..+..+++|+.|++++|.....+|. +..+++|++|+
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 346777777777766 666655 666777777777766666 5566666666666666654443443 33466666666
Q ss_pred ecCCCCCCCCCccccccCCccccceeeccCCCceecCc----cccCCCCCCEEecc
Q 047943 91 ILNCTNLAYIPSCIHNFNNLRSVIGLCLRNTAIEEVPS----SIESLTKLEKLDLS 142 (479)
Q Consensus 91 L~~c~~l~~~p~~l~~l~~L~~L~~L~L~~~~i~~lp~----~i~~l~~L~~L~L~ 142 (479)
+++|... .++ ....+..++.|+.|++++|.+..++. .++.+++|+.|+++
T Consensus 95 ls~N~i~-~~~-~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNKIK-DLS-TIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSCCC-SHH-HHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCcCC-ChH-HHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 6665422 211 00112223333445555555544443 34445555555443
No 124
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.30 E-value=5.8e-12 Score=108.65 Aligned_cols=103 Identities=21% Similarity=0.327 Sum_probs=59.5
Q ss_pred CCCCceEEECCCCCCc--ccccccCCCCCCcEEEccCCCCCCCCCCCCCCCCCcEEeecCCCCCCCCCccccccCCcccc
Q 047943 36 EPENLLELNLPYSKIE--TIWEVKKEAPKLKYINLHNSQYLTGMPDLSETPNLERLNILNCTNLAYIPSCIHNFNNLRSV 113 (479)
Q Consensus 36 ~~~~L~~L~L~~s~i~--~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c~~l~~~p~~l~~l~~L~~L 113 (479)
.+++|++|++++|.+. .++..+..+++|+.|++++|. ++.++.+..+++|++|++++|.....+|..+.++.+ |
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~---L 90 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVG-LTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPN---L 90 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSC-CCCCTTCCCCTTCCEEECCSSCCCSCTHHHHHHCTT---C
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCC-CCCchhhhcCCCCCEEECCCCcccchHHHHhhhCCC---C
Confidence 3467778888887777 677767777778888877774 333466777777777777776544333333333222 3
Q ss_pred ceeeccCCCceecC--ccccCCCCCCEEecc
Q 047943 114 IGLCLRNTAIEEVP--SSIESLTKLEKLDLS 142 (479)
Q Consensus 114 ~~L~L~~~~i~~lp--~~i~~l~~L~~L~L~ 142 (479)
++|++++|.+..++ ..++.+++|+.|+++
T Consensus 91 ~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~ 121 (149)
T 2je0_A 91 THLNLSGNKIKDLSTIEPLKKLENLKSLDLF 121 (149)
T ss_dssp CEEECTTSCCCSHHHHGGGGGCTTCCEEECT
T ss_pred CEEECCCCcCCChHHHHHHhhCCCCCEEeCc
Confidence 33555555554432 334444444444333
No 125
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.30 E-value=3.9e-12 Score=124.99 Aligned_cols=101 Identities=18% Similarity=0.200 Sum_probs=63.4
Q ss_pred ccccCCeeeccCccccccCcccccccCCCCCCCCCCCCCCCCeeecCCCccccccCCCceeecCCCCCCCCCcccCCCCC
Q 047943 170 KMERLRSVDLQSTEVEELPSSMENLEGLKDLPDSLPNLKSLQFLNVERLFSIADLDKLEDLSISGRRGLILPPLLSGLSS 249 (479)
Q Consensus 170 ~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~lp~~l~~l~~L~~L~l~~l~~l~~l~~L~~L~l~~~~~~~lp~~~~~l~~ 249 (479)
.+++|+.+++.+|.++.+|.. . +.++++|+.+++.++-...-+..|.++++
T Consensus 224 ~~~~L~~l~L~~n~i~~I~~~------------a-----------------F~~~~~L~~l~l~~ni~~I~~~aF~~~~~ 274 (329)
T 3sb4_A 224 YMPNLVSLDISKTNATTIPDF------------T-----------------FAQKKYLLKIKLPHNLKTIGQRVFSNCGR 274 (329)
T ss_dssp HCTTCCEEECTTBCCCEECTT------------T-----------------TTTCTTCCEEECCTTCCEECTTTTTTCTT
T ss_pred hcCCCeEEECCCCCcceecHh------------h-----------------hhCCCCCCEEECCcccceehHHHhhCChh
Confidence 366777777777777766542 2 23334444444444422223345677777
Q ss_pred CC-EEEcCCCCCccC-CccCCCCCCCCEEeCCCCcCCccChhhhcCCCchhHH
Q 047943 250 LT-KLVLTCCDVIEI-PQDIGCLSSLELLFLCGNNFSKFTCKYQSTFTAEKTL 300 (479)
Q Consensus 250 L~-~L~L~~~~l~~l-p~~l~~l~~L~~L~Ls~n~l~~lp~~~i~~l~~L~~L 300 (479)
|+ .+++.+ ++..+ +..+..+++|+.+++++|.++.|+...+..+++|+.+
T Consensus 275 L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~l 326 (329)
T 3sb4_A 275 LAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLI 326 (329)
T ss_dssp CCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEE
T ss_pred ccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhh
Confidence 88 888877 66664 4667778888888888888887774456666666554
No 126
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.28 E-value=2.5e-11 Score=109.60 Aligned_cols=126 Identities=17% Similarity=0.272 Sum_probs=76.9
Q ss_pred eeeccCCCceecCccccCCCCCCEEeccCCCCCCCCCEEecCCCCCCCccch--hhhccccCCeeeccCccccccCcccc
Q 047943 115 GLCLRNTAIEEVPSSIESLTKLEKLDLSYCTRLKGLCKLDLGYCSKFECFPE--IIEKMERLRSVDLQSTEVEELPSSME 192 (479)
Q Consensus 115 ~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~L~~L~~L~L~~c~~l~~~p~--~~~~l~~L~~L~L~~~~i~~lp~~i~ 192 (479)
.++++++++.++|..+.. +|+.|++++ |. +..++. .++.+++|++|++++|.+++++.
T Consensus 12 ~l~~s~~~l~~ip~~~~~--~l~~L~l~~--------------n~-i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--- 71 (192)
T 1w8a_A 12 TVDCTGRGLKEIPRDIPL--HTTELLLND--------------NE-LGRISSDGLFGRLPHLVKLELKRNQLTGIEP--- 71 (192)
T ss_dssp EEECTTSCCSSCCSCCCT--TCSEEECCS--------------CC-CCSBCCSCSGGGCTTCCEEECCSSCCCCBCT---
T ss_pred EEEcCCCCcCcCccCCCC--CCCEEECCC--------------Cc-CCccCCccccccCCCCCEEECCCCCCCCcCH---
Confidence 455666666666654322 344444433 32 233332 35666677777777776665421
Q ss_pred cccCCCCCCCCCCCCCCCCeeecCCCccccccCCCceeecCCCCCCCCC-cccCCCCCCCEEEcCCCCCcc-CCccCCCC
Q 047943 193 NLEGLKDLPDSLPNLKSLQFLNVERLFSIADLDKLEDLSISGRRGLILP-PLLSGLSSLTKLVLTCCDVIE-IPQDIGCL 270 (479)
Q Consensus 193 ~l~~L~~lp~~l~~l~~L~~L~l~~l~~l~~l~~L~~L~l~~~~~~~lp-~~~~~l~~L~~L~L~~~~l~~-lp~~l~~l 270 (479)
.. +.++++|++|++++|....++ ..+.++++|++|++++|.+.+ .|..+..+
T Consensus 72 ---------~~-----------------~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 125 (192)
T 1w8a_A 72 ---------NA-----------------FEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHL 125 (192)
T ss_dssp ---------TT-----------------TTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTC
T ss_pred ---------hH-----------------cCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcC
Confidence 11 223344455555556643333 346778889999999999888 67888889
Q ss_pred CCCCEEeCCCCcCCcc
Q 047943 271 SSLELLFLCGNNFSKF 286 (479)
Q Consensus 271 ~~L~~L~Ls~n~l~~l 286 (479)
++|++|++++|.++..
T Consensus 126 ~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 126 NSLTSLNLASNPFNCN 141 (192)
T ss_dssp TTCCEEECTTCCBCCS
T ss_pred CCCCEEEeCCCCccCc
Confidence 9999999999987743
No 127
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.28 E-value=3.8e-11 Score=108.54 Aligned_cols=121 Identities=22% Similarity=0.253 Sum_probs=93.9
Q ss_pred eEEEecCCCCCCCCCCCCCCCceEEECCCCCCcccccccCCCCCCcEEEccCCCCCCCCC-CCCCCCCCcEEeecCCCCC
Q 047943 19 RYLHWYEYPLKTLPSNFEPENLLELNLPYSKIETIWEVKKEAPKLKYINLHNSQYLTGMP-DLSETPNLERLNILNCTNL 97 (479)
Q Consensus 19 r~L~~~~~~l~~lp~~~~~~~L~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p-~l~~l~~L~~L~L~~c~~l 97 (479)
+.++++++.++.+|..+ +++|++|+|++|+++.+|..+..+++|+.|+|++|......+ .|.++++|++|+|++|...
T Consensus 13 ~~l~~~~~~l~~ip~~~-~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~ 91 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGI-PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR 91 (193)
T ss_dssp TEEECTTSCCSSCCSCC-CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CEEEcCCCCCCcCCCCC-CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccC
Confidence 67899999999999765 468999999999999999999999999999999987554444 4899999999999997654
Q ss_pred CCCCccccccCCccccceeeccCCCceecCcc-ccCCCCCCEEeccC
Q 047943 98 AYIPSCIHNFNNLRSVIGLCLRNTAIEEVPSS-IESLTKLEKLDLSY 143 (479)
Q Consensus 98 ~~~p~~l~~l~~L~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~ 143 (479)
...+..+.+ ++.|+.|+|++|.+..+|.. +..+++|+.|++++
T Consensus 92 ~i~~~~f~~---l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 135 (193)
T 2wfh_A 92 CIPPRTFDG---LKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGA 135 (193)
T ss_dssp BCCTTTTTT---CTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCS
T ss_pred EeCHHHhCC---CCCCCEEECCCCCCCeeChhhhhcCccccEEEeCC
Confidence 433444444 44455688888888877753 56666666666665
No 128
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.27 E-value=6e-12 Score=111.94 Aligned_cols=131 Identities=19% Similarity=0.218 Sum_probs=61.9
Q ss_pred CCCCceEEECCCCCCcccccccCCCCCCcEEEccCCCCCCCCCCCCCCCCCcEEeecCCCCCCCCCccc-cccCCccccc
Q 047943 36 EPENLLELNLPYSKIETIWEVKKEAPKLKYINLHNSQYLTGMPDLSETPNLERLNILNCTNLAYIPSCI-HNFNNLRSVI 114 (479)
Q Consensus 36 ~~~~L~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c~~l~~~p~~l-~~l~~L~~L~ 114 (479)
.+.+|++|++++|+++.++......++|+.|++++|.. +.++.+..+++|++|++++|.. ..+|..+ ..+ +.|+
T Consensus 17 ~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l-~~~~~l~~l~~L~~L~Ls~N~l-~~~~~~~~~~l---~~L~ 91 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEI-RKLDGFPLLRRLKTLLVNNNRI-CRIGEGLDQAL---PDLT 91 (176)
T ss_dssp CTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCC-CEECCCCCCSSCCEEECCSSCC-CEECSCHHHHC---TTCC
T ss_pred CcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCC-CcccccccCCCCCEEECCCCcc-cccCcchhhcC---CCCC
Confidence 34444555555544444432222222455555555432 2224444555555555555432 2233222 222 2333
Q ss_pred eeeccCCCceecCc--cccCCCCCCEEeccCCCCCCCCCEEecCCCCCCCccch----hhhccccCCeeeccCccccc
Q 047943 115 GLCLRNTAIEEVPS--SIESLTKLEKLDLSYCTRLKGLCKLDLGYCSKFECFPE----IIEKMERLRSVDLQSTEVEE 186 (479)
Q Consensus 115 ~L~L~~~~i~~lp~--~i~~l~~L~~L~L~~c~~L~~L~~L~L~~c~~l~~~p~----~~~~l~~L~~L~L~~~~i~~ 186 (479)
.|++++|.+..+|. .++.+++|+.|++++ |. +..+|. .+..+++|+.|+++++.+.+
T Consensus 92 ~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~--------------N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 92 ELILTNNSLVELGDLDPLASLKSLTYLCILR--------------NP-VTNKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp EEECCSCCCCCGGGGGGGGGCTTCCEEECCS--------------SG-GGGSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred EEECCCCcCCcchhhHhhhcCCCCCEEEecC--------------CC-CCCcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 45555555555554 455555555555544 22 223344 36667777777777766554
No 129
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.27 E-value=4.6e-11 Score=107.98 Aligned_cols=125 Identities=24% Similarity=0.343 Sum_probs=77.3
Q ss_pred eeeccCCCceecCccccCCCCCCEEeccCCCCCCCCCEEecCCCCCCCccchhhhccccCCeeeccCccccccCcccccc
Q 047943 115 GLCLRNTAIEEVPSSIESLTKLEKLDLSYCTRLKGLCKLDLGYCSKFECFPEIIEKMERLRSVDLQSTEVEELPSSMENL 194 (479)
Q Consensus 115 ~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~L~~L~~L~L~~c~~l~~~p~~~~~l~~L~~L~L~~~~i~~lp~~i~~l 194 (479)
.++++++++.++|..+. ++|+.|++++ | .+..+|..+.++++|++|++++|.+++++..
T Consensus 14 ~l~~~~~~l~~ip~~~~--~~l~~L~L~~--------------n-~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~---- 72 (193)
T 2wfh_A 14 VVRCSNKGLKVLPKGIP--RDVTELYLDG--------------N-QFTLVPKELSNYKHLTLIDLSNNRISTLSNQ---- 72 (193)
T ss_dssp EEECTTSCCSSCCSCCC--TTCCEEECCS--------------S-CCCSCCGGGGGCTTCCEEECCSSCCCCCCTT----
T ss_pred EEEcCCCCCCcCCCCCC--CCCCEEECCC--------------C-cCchhHHHhhcccCCCEEECCCCcCCEeCHh----
Confidence 35666666666665432 3444444443 2 3445666777777777777777777765431
Q ss_pred cCCCCCCCCCCCCCCCCeeecCCCccccccCCCceeecCCCCCCCCC-cccCCCCCCCEEEcCCCCCccCCc-cCCCCCC
Q 047943 195 EGLKDLPDSLPNLKSLQFLNVERLFSIADLDKLEDLSISGRRGLILP-PLLSGLSSLTKLVLTCCDVIEIPQ-DIGCLSS 272 (479)
Q Consensus 195 ~~L~~lp~~l~~l~~L~~L~l~~l~~l~~l~~L~~L~l~~~~~~~lp-~~~~~l~~L~~L~L~~~~l~~lp~-~l~~l~~ 272 (479)
.+.++++|++|++++|....++ ..+.++++|+.|+|++|.+..+|. .+..+++
T Consensus 73 -------------------------~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 127 (193)
T 2wfh_A 73 -------------------------SFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSA 127 (193)
T ss_dssp -------------------------TTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTT
T ss_pred -------------------------HccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCcc
Confidence 1223344555555556644443 346677788888888888777554 4677788
Q ss_pred CCEEeCCCCcCCc
Q 047943 273 LELLFLCGNNFSK 285 (479)
Q Consensus 273 L~~L~Ls~n~l~~ 285 (479)
|+.|++++|.+..
T Consensus 128 L~~L~L~~N~~~C 140 (193)
T 2wfh_A 128 LSHLAIGANPLYC 140 (193)
T ss_dssp CCEEECCSSCEEC
T ss_pred ccEEEeCCCCeec
Confidence 8888888887654
No 130
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.25 E-value=4.5e-11 Score=107.88 Aligned_cols=122 Identities=20% Similarity=0.203 Sum_probs=87.5
Q ss_pred ceEEEecCCCCCCCCCCCCCCCceEEECCCCCCcccccc--cCCCCCCcEEEccCCCCCCCCC-CCCCCCCCcEEeecCC
Q 047943 18 LRYLHWYEYPLKTLPSNFEPENLLELNLPYSKIETIWEV--KKEAPKLKYINLHNSQYLTGMP-DLSETPNLERLNILNC 94 (479)
Q Consensus 18 Lr~L~~~~~~l~~lp~~~~~~~L~~L~L~~s~i~~l~~~--~~~l~~L~~L~Ls~~~~l~~~p-~l~~l~~L~~L~L~~c 94 (479)
-+.++++++.++.+|..+. .+|++|++++|+++.++.. ++.+++|+.|+|++|......| .|.++++|++|+|++|
T Consensus 10 ~~~l~~s~~~l~~ip~~~~-~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 10 GTTVDCTGRGLKEIPRDIP-LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TTEEECTTSCCSSCCSCCC-TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CCEEEcCCCCcCcCccCCC-CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 3678889999999988663 3899999999999888753 7889999999999987655555 5888899999999887
Q ss_pred CCCCCCCccccccCCccccceeeccCCCceec-CccccCCCCCCEEeccC
Q 047943 95 TNLAYIPSCIHNFNNLRSVIGLCLRNTAIEEV-PSSIESLTKLEKLDLSY 143 (479)
Q Consensus 95 ~~l~~~p~~l~~l~~L~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~ 143 (479)
......+..+.+ ++.|+.|++++|.+..+ |..++.+++|+.|++++
T Consensus 89 ~l~~~~~~~~~~---l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 135 (192)
T 1w8a_A 89 KIKEISNKMFLG---LHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLAS 135 (192)
T ss_dssp CCCEECSSSSTT---CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTT
T ss_pred cCCccCHHHhcC---CCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCC
Confidence 654333333443 34455577777777654 44555566665555554
No 131
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.23 E-value=1.9e-11 Score=108.73 Aligned_cols=125 Identities=14% Similarity=0.191 Sum_probs=94.2
Q ss_pred ccCceEEEecCCCCCCCCCCCCCC-CceEEECCCCCCcccccccCCCCCCcEEEccCCCCCCCCC-C-CCCCCCCcEEee
Q 047943 15 PEELRYLHWYEYPLKTLPSNFEPE-NLLELNLPYSKIETIWEVKKEAPKLKYINLHNSQYLTGMP-D-LSETPNLERLNI 91 (479)
Q Consensus 15 ~~~Lr~L~~~~~~l~~lp~~~~~~-~L~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p-~-l~~l~~L~~L~L 91 (479)
+.+|+.|+++++.++.+|...... +|++|++++|.++.+ ..+..+++|+.|++++|... .+| . +..+++|++|++
T Consensus 18 ~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L 95 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALPDLTELIL 95 (176)
T ss_dssp TTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCC-EECSCHHHHCTTCCEEEC
T ss_pred cCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCccc-ccCcchhhcCCCCCEEEC
Confidence 347889999999888887655444 899999999988887 67888889999999988644 444 4 478889999999
Q ss_pred cCCCCCCCCCccccccCCccccceeeccCCCceecCcc----ccCCCCCCEEeccC
Q 047943 92 LNCTNLAYIPSCIHNFNNLRSVIGLCLRNTAIEEVPSS----IESLTKLEKLDLSY 143 (479)
Q Consensus 92 ~~c~~l~~~p~~l~~l~~L~~L~~L~L~~~~i~~lp~~----i~~l~~L~~L~L~~ 143 (479)
++|.. ..+|. +..+..+++|+.|++++|.+..+|.. ++.+++|+.|++++
T Consensus 96 ~~N~i-~~~~~-~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~ 149 (176)
T 1a9n_A 96 TNNSL-VELGD-LDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQK 149 (176)
T ss_dssp CSCCC-CCGGG-GGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEE
T ss_pred CCCcC-Ccchh-hHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCc
Confidence 88754 55554 22344556677789999888888774 77788888887765
No 132
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.16 E-value=2.8e-10 Score=101.06 Aligned_cols=129 Identities=20% Similarity=0.339 Sum_probs=83.7
Q ss_pred ceeeccCCCceecCccccCCCCCCEEeccCCCCCCCCCEEecCCCCCCCccchhhhccccCCeeeccCccccccCccccc
Q 047943 114 IGLCLRNTAIEEVPSSIESLTKLEKLDLSYCTRLKGLCKLDLGYCSKFECFPEIIEKMERLRSVDLQSTEVEELPSSMEN 193 (479)
Q Consensus 114 ~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~L~~L~~L~L~~c~~l~~~p~~~~~l~~L~~L~L~~~~i~~lp~~i~~ 193 (479)
+.++++++++..+|..+. ++|+.|++++ |...+..+..++.+++|++|++++|.++++|..
T Consensus 10 ~~l~~~~~~l~~~p~~~~--~~l~~L~l~~--------------n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~--- 70 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTGIP--SSATRLELES--------------NKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDG--- 70 (177)
T ss_dssp TEEECCSSCCSSCCTTCC--TTCSEEECCS--------------SCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTT---
T ss_pred CEEEecCCCCccCCCCCC--CCCcEEEeCC--------------CcccEeCHHHhcCcccccEEECCCCcceEeChh---
Confidence 345666666666664332 3444444443 333322334456777888888888877765532
Q ss_pred ccCCCCCCCCCCCCCCCCeeecCCCccccccCCCceeecCCCCCCCCCc-ccCCCCCCCEEEcCCCCCccCCcc-CCCCC
Q 047943 194 LEGLKDLPDSLPNLKSLQFLNVERLFSIADLDKLEDLSISGRRGLILPP-LLSGLSSLTKLVLTCCDVIEIPQD-IGCLS 271 (479)
Q Consensus 194 l~~L~~lp~~l~~l~~L~~L~l~~l~~l~~l~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~L~~~~l~~lp~~-l~~l~ 271 (479)
.+..+++|+.|++++|....+|. .+..+++|++|++++|.+.++|.. +..++
T Consensus 71 --------------------------~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~ 124 (177)
T 2o6r_A 71 --------------------------VFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLT 124 (177)
T ss_dssp --------------------------TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT
T ss_pred --------------------------HccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCc
Confidence 12334556666666677555554 357789999999999999886665 57799
Q ss_pred CCCEEeCCCCcCCccC
Q 047943 272 SLELLFLCGNNFSKFT 287 (479)
Q Consensus 272 ~L~~L~Ls~n~l~~lp 287 (479)
+|+.|++++|++...+
T Consensus 125 ~L~~L~l~~N~~~~~~ 140 (177)
T 2o6r_A 125 SLQKIWLHTNPWDCSC 140 (177)
T ss_dssp TCCEEECCSSCBCCCH
T ss_pred ccCEEEecCCCeeccC
Confidence 9999999999877544
No 133
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.11 E-value=8e-10 Score=98.07 Aligned_cols=121 Identities=18% Similarity=0.273 Sum_probs=80.1
Q ss_pred ceEEEecCCCCCCCCCCCCCCCceEEECCCCCCcccccc-cCCCCCCcEEEccCCCCCCCCC-C-CCCCCCCcEEeecCC
Q 047943 18 LRYLHWYEYPLKTLPSNFEPENLLELNLPYSKIETIWEV-KKEAPKLKYINLHNSQYLTGMP-D-LSETPNLERLNILNC 94 (479)
Q Consensus 18 Lr~L~~~~~~l~~lp~~~~~~~L~~L~L~~s~i~~l~~~-~~~l~~L~~L~Ls~~~~l~~~p-~-l~~l~~L~~L~L~~c 94 (479)
.+.++.+++.++.+|..+ +++|++|++++++++.++.. ++.+++|+.|++++|.. +.++ . +..+++|++|++++|
T Consensus 9 ~~~l~~~~~~l~~~p~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGI-PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQI-QSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TTEEECCSSCCSSCCTTC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCC-CCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEecCCCCccCCCCC-CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcc-eEeChhHccCCCccCEEECCCC
Confidence 467788888888888654 46888999998888877643 57888888888888754 4444 3 678888888888886
Q ss_pred CCCCCCCccccccCCccccceeeccCCCceecCcc-ccCCCCCCEEeccC
Q 047943 95 TNLAYIPSCIHNFNNLRSVIGLCLRNTAIEEVPSS-IESLTKLEKLDLSY 143 (479)
Q Consensus 95 ~~l~~~p~~l~~l~~L~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~ 143 (479)
......+..+.+ ++.|+.|++++|.+..+|.. +..+++|+.|++++
T Consensus 87 ~l~~~~~~~~~~---l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 133 (177)
T 2o6r_A 87 KLQSLPNGVFDK---LTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHT 133 (177)
T ss_dssp CCCCCCTTTTTT---CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred CccccCHHHhhC---CcccCEEECcCCcceEeCHHHhcCCcccCEEEecC
Confidence 543222222333 34455577777776666654 24455555554444
No 134
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.09 E-value=4.6e-10 Score=110.08 Aligned_cols=227 Identities=15% Similarity=0.140 Sum_probs=122.5
Q ss_pred CceEEEecCCCCC--------------------CCCCC-C-C--------CCCceEEECCCCCCcccc-cccCCCCCCcE
Q 047943 17 ELRYLHWYEYPLK--------------------TLPSN-F-E--------PENLLELNLPYSKIETIW-EVKKEAPKLKY 65 (479)
Q Consensus 17 ~Lr~L~~~~~~l~--------------------~lp~~-~-~--------~~~L~~L~L~~s~i~~l~-~~~~~l~~L~~ 65 (479)
+|+.|+++++.+. .+|.. | . +.+|++|+|++ +++.++ ..|..+++|+.
T Consensus 50 ~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~ 128 (329)
T 3sb4_A 50 SLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKI 128 (329)
T ss_dssp TCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCE
T ss_pred cCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCcccce
Confidence 7899999888877 33332 3 4 56666666666 565554 23556666666
Q ss_pred EEccCCCCCCCCC-CCCCCCCCcEEeecCCC---CCCC-CCccccccCCccccceeeccCCCceecCccc----cCCCCC
Q 047943 66 INLHNSQYLTGMP-DLSETPNLERLNILNCT---NLAY-IPSCIHNFNNLRSVIGLCLRNTAIEEVPSSI----ESLTKL 136 (479)
Q Consensus 66 L~Ls~~~~l~~~p-~l~~l~~L~~L~L~~c~---~l~~-~p~~l~~l~~L~~L~~L~L~~~~i~~lp~~i----~~l~~L 136 (479)
++++++....-.+ .|..+.++..+.+.... .... -...+.++..++. .+.+... ..++..+ ....++
T Consensus 129 l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~--~i~~~~~--~~l~~~~~~~~~~~~~~ 204 (329)
T 3sb4_A 129 CQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLET--TIQVGAM--GKLEDEIMKAGLQPRDI 204 (329)
T ss_dssp EEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEE--EEEECTT--CCHHHHHHHTTCCGGGC
T ss_pred EEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccce--eEEecCC--CcHHHHHhhcccCcccc
Confidence 6666554322222 25555555444433210 0000 1112223332221 1111111 1111111 123444
Q ss_pred CEEeccCCC----------CCCCCCEEecCCCCCCCccc-hhhhccccCCeeeccCccccccCcccccccCCCCCCCCCC
Q 047943 137 EKLDLSYCT----------RLKGLCKLDLGYCSKFECFP-EIIEKMERLRSVDLQSTEVEELPSSMENLEGLKDLPDSLP 205 (479)
Q Consensus 137 ~~L~L~~c~----------~L~~L~~L~L~~c~~l~~~p-~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~lp~~l~ 205 (479)
..+.+.+.- .+++|+.+++++|. +..+| ..+.++.+|+++++.++ ++.++.. .+.
T Consensus 205 ~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~-i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~------------aF~ 270 (329)
T 3sb4_A 205 NFLTIEGKLDNADFKLIRDYMPNLVSLDISKTN-ATTIPDFTFAQKKYLLKIKLPHN-LKTIGQR------------VFS 270 (329)
T ss_dssp SEEEEEECCCHHHHHHHHHHCTTCCEEECTTBC-CCEECTTTTTTCTTCCEEECCTT-CCEECTT------------TTT
T ss_pred ceEEEeeeecHHHHHHHHHhcCCCeEEECCCCC-cceecHhhhhCCCCCCEEECCcc-cceehHH------------Hhh
Confidence 555544421 25778888888765 44444 57889999999999886 6666542 333
Q ss_pred CCCCCCeeecCCCccccccCCCceeecCCCCCCCCCcccCCCCCCCEEEcCCCCCccCC-ccCCCCCCCCEEeC
Q 047943 206 NLKSLQFLNVERLFSIADLDKLEDLSISGRRGLILPPLLSGLSSLTKLVLTCCDVIEIP-QDIGCLSSLELLFL 278 (479)
Q Consensus 206 ~l~~L~~L~l~~l~~l~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~lp-~~l~~l~~L~~L~L 278 (479)
+|.+|+ ..+.+.+.-...-+..|.++++|+.++++++++..++ ..+.++++|+.+..
T Consensus 271 ~~~~L~----------------~~l~l~~~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 271 NCGRLA----------------GTLELPASVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp TCTTCC----------------EEEEECTTCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred CChhcc----------------EEEEEcccceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 444444 0444444222223456778889999999888888854 46788888888753
No 135
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.02 E-value=2.9e-12 Score=116.32 Aligned_cols=18 Identities=22% Similarity=0.344 Sum_probs=8.1
Q ss_pred CCCCCCCEEEcCCCCCcc
Q 047943 245 SGLSSLTKLVLTCCDVIE 262 (479)
Q Consensus 245 ~~l~~L~~L~L~~~~l~~ 262 (479)
..+++|++|++++|.+.+
T Consensus 137 ~~l~~L~~L~l~~N~l~~ 154 (198)
T 1ds9_A 137 AALDKLEDLLLAGNPLYN 154 (198)
T ss_dssp TTTTTCSEEEECSCHHHH
T ss_pred hcCCCCCEEEecCCcccc
Confidence 334444444444444433
No 136
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.00 E-value=1.5e-09 Score=96.29 Aligned_cols=62 Identities=24% Similarity=0.339 Sum_probs=46.6
Q ss_pred CCceeecCCCCCCCCCcc-cCCCCCCCEEEcCCCCCccCCcc-CCCCCCCCEEeCCCCcCCccC
Q 047943 226 KLEDLSISGRRGLILPPL-LSGLSSLTKLVLTCCDVIEIPQD-IGCLSSLELLFLCGNNFSKFT 287 (479)
Q Consensus 226 ~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~L~~~~l~~lp~~-l~~l~~L~~L~Ls~n~l~~lp 287 (479)
+|+.|++++|....+|.. +..+++|+.|+|++|.+.++|.. +..+++|+.|+|++|.+...+
T Consensus 58 ~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~ 121 (174)
T 2r9u_A 58 NLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCEC 121 (174)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred CCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCccccc
Confidence 344444444554444443 46788999999999999997764 889999999999999998777
No 137
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.97 E-value=4.6e-12 Score=115.00 Aligned_cols=61 Identities=28% Similarity=0.301 Sum_probs=40.4
Q ss_pred CCCceeecCCCCCCCCCcccCCCCCCCEEEcCCCCCccCCc--cCCCCCCCCEEeCCCCcCCcc
Q 047943 225 DKLEDLSISGRRGLILPPLLSGLSSLTKLVLTCCDVIEIPQ--DIGCLSSLELLFLCGNNFSKF 286 (479)
Q Consensus 225 ~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~lp~--~l~~l~~L~~L~Ls~n~l~~l 286 (479)
++|++|++++|....+| .+..+++|+.|++++|.+.+++. .+..+++|+.|++++|.++..
T Consensus 93 ~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~ 155 (198)
T 1ds9_A 93 DTLEELWISYNQIASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND 155 (198)
T ss_dssp HHCSEEEEEEEECCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHH
T ss_pred CcCCEEECcCCcCCcCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccc
Confidence 44555555555544444 25566778888888887777543 577788888888888876544
No 138
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.94 E-value=7.2e-08 Score=97.06 Aligned_cols=240 Identities=13% Similarity=0.188 Sum_probs=117.1
Q ss_pred CceEEEecCCCCCCCCC-CCCCCCceEEECCCCCCccccc-ccCCCCCCcEEEccCCCCCCCCC--CCCCCCCCcEEeec
Q 047943 17 ELRYLHWYEYPLKTLPS-NFEPENLLELNLPYSKIETIWE-VKKEAPKLKYINLHNSQYLTGMP--DLSETPNLERLNIL 92 (479)
Q Consensus 17 ~Lr~L~~~~~~l~~lp~-~~~~~~L~~L~L~~s~i~~l~~-~~~~l~~L~~L~Ls~~~~l~~~p--~l~~l~~L~~L~L~ 92 (479)
.++.+.+.. .++.++. .|.-.+|+.+.++.+ ++.+.. .+.+ .+|+.+.+.. .++.++ .|.++++|+.+++.
T Consensus 114 ~l~~i~ip~-~i~~I~~~aF~~~~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~--~l~~I~~~aF~~c~~L~~l~l~ 188 (401)
T 4fdw_A 114 GYNEIILPN-SVKSIPKDAFRNSQIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS--TLEQLKEDIFYYCYNLKKADLS 188 (401)
T ss_dssp SCSEEECCT-TCCEECTTTTTTCCCSEEECCTT-CCEECTTTTTT-CCCCEEECCT--TCCEECSSTTTTCTTCCEEECT
T ss_pred CccEEEECC-ccCEehHhhcccCCccEEEeCCC-ccEECHHhcCC-CCceEEEeCC--CccEehHHHhhCcccCCeeecC
Confidence 344444332 2444443 343346777777665 666543 3444 3677777765 344444 47777777777777
Q ss_pred CCCCCCCCCccccccCCccccceeeccCCCceecCc-cccCCCCCCEEeccCC---------CCCCCCCEEecCCCCCCC
Q 047943 93 NCTNLAYIPSCIHNFNNLRSVIGLCLRNTAIEEVPS-SIESLTKLEKLDLSYC---------TRLKGLCKLDLGYCSKFE 162 (479)
Q Consensus 93 ~c~~l~~~p~~l~~l~~L~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~c---------~~L~~L~~L~L~~c~~l~ 162 (479)
++ .+..++.....+. .|+.+.+..+ +..++. .+.++++|+.+++... .+ .+|+.+.+.. .+.
T Consensus 189 ~n-~l~~I~~~aF~~~---~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~l~~I~~~aF~~-~~L~~i~lp~--~i~ 260 (401)
T 4fdw_A 189 KT-KITKLPASTFVYA---GIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPENVSTIGQEAFRE-SGITTVKLPN--GVT 260 (401)
T ss_dssp TS-CCSEECTTTTTTC---CCSEEECCTT-CCEECTTTTTTCTTCCCEECCTTCCEECTTTTTT-CCCSEEEEET--TCC
T ss_pred CC-cceEechhhEeec---ccCEEEeCCc-hheehhhHhhCCCCCCEEecCCCccCcccccccc-CCccEEEeCC--Ccc
Confidence 63 3445554443333 3444666533 455543 3556666666666531 11 2344444421 122
Q ss_pred cc-chhhhccccCCeeeccCcccc-----ccCcccccccCCCCCCCCCCCCCCCCeeecCCCccccccCCCceeecCCCC
Q 047943 163 CF-PEIIEKMERLRSVDLQSTEVE-----ELPSSMENLEGLKDLPDSLPNLKSLQFLNVERLFSIADLDKLEDLSISGRR 236 (479)
Q Consensus 163 ~~-p~~~~~l~~L~~L~L~~~~i~-----~lp~~i~~l~~L~~lp~~l~~l~~L~~L~l~~l~~l~~l~~L~~L~l~~~~ 236 (479)
.+ ...+.++++|+.+.+.++.+. .++. ..+.++++|+.+.+.+.-
T Consensus 261 ~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~-----------------------------~aF~~c~~L~~l~l~~~i 311 (401)
T 4fdw_A 261 NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHP-----------------------------YCLEGCPKLARFEIPESI 311 (401)
T ss_dssp EECTTTTTTCTTCCEEEEESSCCCCCTTCEECT-----------------------------TTTTTCTTCCEECCCTTC
T ss_pred EEChhHhhCCCCCCEEEeCCccccCCcccEECH-----------------------------HHhhCCccCCeEEeCCce
Confidence 22 234455555555555554433 1111 123344444444444221
Q ss_pred CCCCCcccCCCCCCCEEEcCCCCCccC-CccCCCCCCCCEEeCCCCcCCccChhhhcCCC-chhHH
Q 047943 237 GLILPPLLSGLSSLTKLVLTCCDVIEI-PQDIGCLSSLELLFLCGNNFSKFTCKYQSTFT-AEKTL 300 (479)
Q Consensus 237 ~~~lp~~~~~l~~L~~L~L~~~~l~~l-p~~l~~l~~L~~L~Ls~n~l~~lp~~~i~~l~-~L~~L 300 (479)
...-...|.++++|+.+.|.++ +..+ ...+..+ +|+.+++.+|.+..++...+..++ +++.|
T Consensus 312 ~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l 375 (401)
T 4fdw_A 312 RILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVI 375 (401)
T ss_dssp CEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEE
T ss_pred EEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEE
Confidence 1122233555666666666433 4443 3345555 666666666665554433344442 34444
No 139
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.89 E-value=8.8e-09 Score=90.82 Aligned_cols=76 Identities=18% Similarity=0.243 Sum_probs=51.8
Q ss_pred ceEEEecCCCCCCCCCCCCCCCceEEECCCCCCccc-ccccCCCCCCcEEEccCCCCCCCCC-C-CCCCCCCcEEeecCC
Q 047943 18 LRYLHWYEYPLKTLPSNFEPENLLELNLPYSKIETI-WEVKKEAPKLKYINLHNSQYLTGMP-D-LSETPNLERLNILNC 94 (479)
Q Consensus 18 Lr~L~~~~~~l~~lp~~~~~~~L~~L~L~~s~i~~l-~~~~~~l~~L~~L~Ls~~~~l~~~p-~-l~~l~~L~~L~L~~c 94 (479)
.+.++++++.++.+|..+ +++|++|+|++|+++.+ +..+..+++|+.|+|++|+.. .+| . |.++++|++|+|++|
T Consensus 11 ~~~l~~s~n~l~~ip~~~-~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGI-PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TTEEECTTSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCCcCccCccC-CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcC-ccChhhccCCCCCCEEECCCC
Confidence 456777777777777655 36777777777777776 455677777777777777533 443 2 566777777777765
Q ss_pred C
Q 047943 95 T 95 (479)
Q Consensus 95 ~ 95 (479)
.
T Consensus 89 ~ 89 (170)
T 3g39_A 89 Q 89 (170)
T ss_dssp C
T ss_pred c
Confidence 3
No 140
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.89 E-value=9.2e-09 Score=91.09 Aligned_cols=75 Identities=16% Similarity=0.280 Sum_probs=51.4
Q ss_pred eEEEecCCCCCCCCCCCCCCCceEEECCCCCCccc-ccccCCCCCCcEEEccCCCCCCCCC-C-CCCCCCCcEEeecCCC
Q 047943 19 RYLHWYEYPLKTLPSNFEPENLLELNLPYSKIETI-WEVKKEAPKLKYINLHNSQYLTGMP-D-LSETPNLERLNILNCT 95 (479)
Q Consensus 19 r~L~~~~~~l~~lp~~~~~~~L~~L~L~~s~i~~l-~~~~~~l~~L~~L~Ls~~~~l~~~p-~-l~~l~~L~~L~L~~c~ 95 (479)
+.++++++.++.+|..+. ++|++|+|++|+++.+ +..+..+++|+.|+|++|+ ++.+| . |.++++|++|+|++|.
T Consensus 15 ~~l~~~~n~l~~iP~~~~-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP-TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNK-LTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCSSCCSCCC-TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCCccCCCcC-CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCC-CCccChhHhCCcchhhEEECCCCc
Confidence 567777777777777553 6777777777777766 4556777777777777774 33444 2 5667777777777653
No 141
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.88 E-value=1.2e-07 Score=95.09 Aligned_cols=296 Identities=14% Similarity=0.117 Sum_probs=145.4
Q ss_pred CCCCCCCCC-C-CCCCceEEECCCCCCcccc-cccCCCCCCcEEEccCCCCCCCCC--CCCCCCCCcEEeecCCCCCCCC
Q 047943 26 YPLKTLPSN-F-EPENLLELNLPYSKIETIW-EVKKEAPKLKYINLHNSQYLTGMP--DLSETPNLERLNILNCTNLAYI 100 (479)
Q Consensus 26 ~~l~~lp~~-~-~~~~L~~L~L~~s~i~~l~-~~~~~l~~L~~L~Ls~~~~l~~~p--~l~~l~~L~~L~L~~c~~l~~~ 100 (479)
|+++++... | .+.+|+++.++. .++.+. ..+.++.+|+.+++..+ ++.++ .|.++.+|+.+.+... +..+
T Consensus 57 y~VtsIg~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~c~~L~~i~~p~~--l~~i 131 (394)
T 4fs7_A 57 YDVVSIGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS--VKMIGRCTFSGCYALKSILLPLM--LKSI 131 (394)
T ss_dssp EEEEEECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCTTCCCCCCCTT--CCEE
T ss_pred eeEeEhHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC--ceEccchhhcccccchhhcccCc--eeee
Confidence 445666654 6 789999999985 488775 55888999999999765 45554 4788888887766542 2221
Q ss_pred C-ccccccCCccccceeeccCCCceec-CccccCCCCCCEEeccC---------CCCCCCCCEEecCCCCCCCccc-hhh
Q 047943 101 P-SCIHNFNNLRSVIGLCLRNTAIEEV-PSSIESLTKLEKLDLSY---------CTRLKGLCKLDLGYCSKFECFP-EII 168 (479)
Q Consensus 101 p-~~l~~l~~L~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~---------c~~L~~L~~L~L~~c~~l~~~p-~~~ 168 (479)
. ..+.++.... ..... .+..+ ...+..+++|+.+.+.+ ..++.+|+.+.+..+ +..++ ..+
T Consensus 132 ~~~aF~~~~~~~---~~~~~--~~~~i~~~aF~~c~~L~~i~l~~~~~~I~~~~F~~c~~L~~i~l~~~--~~~I~~~~F 204 (394)
T 4fs7_A 132 GVEAFKGCDFKE---ITIPE--GVTVIGDEAFATCESLEYVSLPDSMETLHNGLFSGCGKLKSIKLPRN--LKIIRDYCF 204 (394)
T ss_dssp CTTTTTTCCCSE---EECCT--TCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCBCCCCTT--CCEECTTTT
T ss_pred cceeeecccccc---cccCc--cccccchhhhcccCCCcEEecCCccceeccccccCCCCceEEEcCCC--ceEeCchhh
Confidence 1 1222221110 01100 11111 12344555566555543 123334444444321 22221 234
Q ss_pred hccccCCeeeccCccccccCcccccccCCCC--CC--------CCCCCCCCCCeeecCC------CccccccCCCceeec
Q 047943 169 EKMERLRSVDLQSTEVEELPSSMENLEGLKD--LP--------DSLPNLKSLQFLNVER------LFSIADLDKLEDLSI 232 (479)
Q Consensus 169 ~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~--lp--------~~l~~l~~L~~L~l~~------l~~l~~l~~L~~L~l 232 (479)
.++..|+.+.+..+.. .+........+|+. +| ..+..+..|+.+.+.. -..+..+..++.+..
T Consensus 205 ~~~~~L~~i~~~~~~~-~i~~~~~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~ 283 (394)
T 4fs7_A 205 AECILLENMEFPNSLY-YLGDFALSKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIY 283 (394)
T ss_dssp TTCTTCCBCCCCTTCC-EECTTTTTTCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEE
T ss_pred ccccccceeecCCCce-EeehhhcccCCCceEEECCCceecccccccccccceeEEcCCCcceeeccccccccccceecc
Confidence 4555555555443211 11111111122221 11 2234455555555543 123334445555444
Q ss_pred CCCCCCCCCcccCCCCCCCEEEcCCCCCccC-CccCCCCCCCCEEeCCCCcCCccChhhhcCCCchhHHHHHhhhhhhhh
Q 047943 233 SGRRGLILPPLLSGLSSLTKLVLTCCDVIEI-PQDIGCLSSLELLFLCGNNFSKFTCKYQSTFTAEKTLLELLQYATVIT 311 (479)
Q Consensus 233 ~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~l-p~~l~~l~~L~~L~Ls~n~l~~lp~~~i~~l~~L~~L~~~L~~n~~~~ 311 (479)
.... .-...+..+.+|+.+.+.++ +..+ ...+..+++|+.++|..+ ++.|+...+..+.+|+.+ .+..+ +..
T Consensus 284 ~~~~--i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i--~lp~~-l~~ 356 (394)
T 4fs7_A 284 GSVI--VPEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNI--NFPLS-LRK 356 (394)
T ss_dssp CSSE--ECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEE--CCCTT-CCE
T ss_pred Ccee--eccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEE--EECcc-ccE
Confidence 3322 11123445666666666543 4443 334556667777776533 666654566666666666 55433 111
Q ss_pred ccCCccccCCCccccccCCCCc-----cccccCCcccc
Q 047943 312 RASSSSTLFSCNELQAAPVFAR-----ASIMSTRIRRI 344 (479)
Q Consensus 312 ~~~~~~~l~~C~~L~~lp~lp~-----~~~~~~C~~L~ 344 (479)
-+ .....+|.+|+++ .+|. .+.|.+|.+|.
T Consensus 357 I~--~~aF~~C~~L~~i-~lp~~~~~~~~~F~~c~~L~ 391 (394)
T 4fs7_A 357 IG--ANAFQGCINLKKV-ELPKRLEQYRYDFEDTTKFK 391 (394)
T ss_dssp EC--TTTBTTCTTCCEE-EEEGGGGGGGGGBCTTCEEE
T ss_pred eh--HHHhhCCCCCCEE-EECCCCEEhhheecCCCCCc
Confidence 11 0145667777665 2333 23477888875
No 142
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.83 E-value=2.4e-07 Score=93.27 Aligned_cols=229 Identities=14% Similarity=0.187 Sum_probs=148.8
Q ss_pred CCCceEEECCCCCCcccc-cccCCCCCCcEEEccCCCCCCCCC--CCCCCCCCcEEeecCCCCCCCCC-ccccccCCccc
Q 047943 37 PENLLELNLPYSKIETIW-EVKKEAPKLKYINLHNSQYLTGMP--DLSETPNLERLNILNCTNLAYIP-SCIHNFNNLRS 112 (479)
Q Consensus 37 ~~~L~~L~L~~s~i~~l~-~~~~~l~~L~~L~Ls~~~~l~~~p--~l~~l~~L~~L~L~~c~~l~~~p-~~l~~l~~L~~ 112 (479)
+..++.+.++.+ ++.+. ..+.++ +|+.+++..+ ++.++ .|.+ .+|+.+.+.. .+..++ ..+.+|.+
T Consensus 112 ~~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~--i~~I~~~aF~~-~~L~~i~lp~--~l~~I~~~aF~~c~~--- 181 (401)
T 4fdw_A 112 LKGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG--LKSIGDMAFFN-STVQEIVFPS--TLEQLKEDIFYYCYN--- 181 (401)
T ss_dssp CSSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT--CCEECTTTTTT-CCCCEEECCT--TCCEECSSTTTTCTT---
T ss_pred cCCccEEEECCc-cCEehHhhcccC-CccEEEeCCC--ccEECHHhcCC-CCceEEEeCC--CccEehHHHhhCccc---
Confidence 456677777653 55554 345554 7888888765 55555 3666 3688888875 344443 33444444
Q ss_pred cceeeccCCCceecCccccCCCCCCEEeccCCCCCCCCCEEecCCCCCCCcc-chhhhccccCCeeeccCccccccCccc
Q 047943 113 VIGLCLRNTAIEEVPSSIESLTKLEKLDLSYCTRLKGLCKLDLGYCSKFECF-PEIIEKMERLRSVDLQSTEVEELPSSM 191 (479)
Q Consensus 113 L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~L~~L~~L~L~~c~~l~~~-p~~~~~l~~L~~L~L~~~~i~~lp~~i 191 (479)
|+.+++..|.+..++.......+|+.+.+.. .+..+ ...+.++.+|+.+.+..+ ++.++..
T Consensus 182 L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~----------------~l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~- 243 (401)
T 4fdw_A 182 LKKADLSKTKITKLPASTFVYAGIEEVLLPV----------------TLKEIGSQAFLKTSQLKTIEIPEN-VSTIGQE- 243 (401)
T ss_dssp CCEEECTTSCCSEECTTTTTTCCCSEEECCT----------------TCCEECTTTTTTCTTCCCEECCTT-CCEECTT-
T ss_pred CCeeecCCCcceEechhhEeecccCEEEeCC----------------chheehhhHhhCCCCCCEEecCCC-ccCcccc-
Confidence 4558888888888876655556677666653 12222 234566667777776643 3333321
Q ss_pred ccccCCCCCCCCCCCCCCCCeeecCC-C-----ccccccCCCceeecCCCCCC------CCCcccCCCCCCCEEEcCCCC
Q 047943 192 ENLEGLKDLPDSLPNLKSLQFLNVER-L-----FSIADLDKLEDLSISGRRGL------ILPPLLSGLSSLTKLVLTCCD 259 (479)
Q Consensus 192 ~~l~~L~~lp~~l~~l~~L~~L~l~~-l-----~~l~~l~~L~~L~l~~~~~~------~lp~~~~~l~~L~~L~L~~~~ 259 (479)
.+.+ .+|+.+.+.. + ..+.++++|+.+.+.++... .-+..|.++++|+.+.+.+ +
T Consensus 244 -----------aF~~-~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~ 310 (401)
T 4fdw_A 244 -----------AFRE-SGITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-S 310 (401)
T ss_dssp -----------TTTT-CCCSEEEEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-T
T ss_pred -----------cccc-CCccEEEeCCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-c
Confidence 2222 3455555543 1 45667788888888776543 4445688999999999994 5
Q ss_pred CccC-CccCCCCCCCCEEeCCCCcCCccChhhhcCCCchhHHHHHhhhhhhh
Q 047943 260 VIEI-PQDIGCLSSLELLFLCGNNFSKFTCKYQSTFTAEKTLLELLQYATVI 310 (479)
Q Consensus 260 l~~l-p~~l~~l~~L~~L~Ls~n~l~~lp~~~i~~l~~L~~L~~~L~~n~~~ 310 (479)
+..+ ...+..+++|+.+.|..+ ++.|+...+..+ +|+.+ .+.+|...
T Consensus 311 i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l--~l~~n~~~ 358 (401)
T 4fdw_A 311 IRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEV--KVEGTTPP 358 (401)
T ss_dssp CCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEE--EECCSSCC
T ss_pred eEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEE--EEcCCCCc
Confidence 7764 456788999999999654 888876788888 99999 99888653
No 143
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.80 E-value=2.5e-08 Score=87.85 Aligned_cols=99 Identities=16% Similarity=0.250 Sum_probs=69.5
Q ss_pred ceEEECCCCCCcccccccCCCCCCcEEEccCCCCCCCCC-CCCCCCCCcEEeecCCCCCCCCCccccccCCccccceeec
Q 047943 40 LLELNLPYSKIETIWEVKKEAPKLKYINLHNSQYLTGMP-DLSETPNLERLNILNCTNLAYIPSCIHNFNNLRSVIGLCL 118 (479)
Q Consensus 40 L~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~p-~l~~l~~L~~L~L~~c~~l~~~p~~l~~l~~L~~L~~L~L 118 (479)
.++++++++.++.+|..+ .++|+.|+|++|......| .|.++++|++|+|++|.. ..+|... +..++.|++|+|
T Consensus 11 ~~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l-~~l~~~~--f~~l~~L~~L~L 85 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQL-TVLPAGV--FDKLTQLTQLSL 85 (170)
T ss_dssp TTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCC-CCCCTTT--TTTCTTCCEEEC
T ss_pred CCEEEeCCCCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCc-CccChhh--ccCCCCCCEEEC
Confidence 468999999999998766 4889999999987555445 488899999999998754 3444321 233444555777
Q ss_pred cCCCceecCcc-ccCCCCCCEEeccC
Q 047943 119 RNTAIEEVPSS-IESLTKLEKLDLSY 143 (479)
Q Consensus 119 ~~~~i~~lp~~-i~~l~~L~~L~L~~ 143 (479)
++|.+..+|.. ++.+++|+.|++++
T Consensus 86 ~~N~l~~~~~~~~~~l~~L~~L~L~~ 111 (170)
T 3g39_A 86 NDNQLKSIPRGAFDNLKSLTHIWLLN 111 (170)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCccCEeCHHHhcCCCCCCEEEeCC
Confidence 77777777653 56666666666655
No 144
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.78 E-value=3.2e-07 Score=92.09 Aligned_cols=275 Identities=15% Similarity=0.149 Sum_probs=165.3
Q ss_pred Ccccc-cccCCCCCCcEEEccCCCCCCCCC--CCCCCCCCcEEeecCCCCCCCCC-ccccccCCccccceeeccCCCcee
Q 047943 50 IETIW-EVKKEAPKLKYINLHNSQYLTGMP--DLSETPNLERLNILNCTNLAYIP-SCIHNFNNLRSVIGLCLRNTAIEE 125 (479)
Q Consensus 50 i~~l~-~~~~~l~~L~~L~Ls~~~~l~~~p--~l~~l~~L~~L~L~~c~~l~~~p-~~l~~l~~L~~L~~L~L~~~~i~~ 125 (479)
++.+. ..|.++.+|+.+.+..+ ++.++ .|.++++|+.+++..+ +..++ ..+.++.+|+. +.+..+ +..
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~~--i~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~c~~L~~---i~~p~~-l~~ 130 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPST--VREIGEFAFENCSKLEIINIPDS--VKMIGRCTFSGCYALKS---ILLPLM-LKS 130 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCTT--CCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCTTCCC---CCCCTT-CCE
T ss_pred EeEhHHHHhhCCCCceEEEeCCC--ccCcchhHhhCCCCCcEEEeCCC--ceEccchhhcccccchh---hcccCc-eee
Confidence 55564 45888999999999754 66665 5899999999999753 44443 34556665554 333222 222
Q ss_pred cC-ccccCCC--------CCCEEeccCCCCCCCCCEEecCCCCCCCccc-hhhhccccCCeeeccCccccccC-cccccc
Q 047943 126 VP-SSIESLT--------KLEKLDLSYCTRLKGLCKLDLGYCSKFECFP-EIIEKMERLRSVDLQSTEVEELP-SSMENL 194 (479)
Q Consensus 126 lp-~~i~~l~--------~L~~L~L~~c~~L~~L~~L~L~~c~~l~~~p-~~~~~l~~L~~L~L~~~~i~~lp-~~i~~l 194 (479)
+. ..+..+. ..+.+.-.-..++++|+.+.+... ...++ ..+.++.+|+.+.+..+ ++.++ ..+.++
T Consensus 131 i~~~aF~~~~~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~ 207 (394)
T 4fs7_A 131 IGVEAFKGCDFKEITIPEGVTVIGDEAFATCESLEYVSLPDS--METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAEC 207 (394)
T ss_dssp ECTTTTTTCCCSEEECCTTCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTC
T ss_pred ecceeeecccccccccCccccccchhhhcccCCCcEEecCCc--cceeccccccCCCCceEEEcCCC-ceEeCchhhccc
Confidence 21 1222222 222222222346677788877642 22333 45677788888888654 44433 234555
Q ss_pred cCCCCC---------CCCCCCCCCCCeeecCC-C-----ccccccCCCceeecCCCCCCCCCcccCCCCCCCEEEcCCCC
Q 047943 195 EGLKDL---------PDSLPNLKSLQFLNVER-L-----FSIADLDKLEDLSISGRRGLILPPLLSGLSSLTKLVLTCCD 259 (479)
Q Consensus 195 ~~L~~l---------p~~l~~l~~L~~L~l~~-l-----~~l~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~ 259 (479)
..|+.+ .........|+.+.+.. . ..+.++..|+.+.+..+....-...+..+..++.+......
T Consensus 208 ~~L~~i~~~~~~~~i~~~~~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~ 287 (394)
T 4fs7_A 208 ILLENMEFPNSLYYLGDFALSKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVI 287 (394)
T ss_dssp TTCCBCCCCTTCCEECTTTTTTCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSE
T ss_pred cccceeecCCCceEeehhhcccCCCceEEECCCceecccccccccccceeEEcCCCcceeeccccccccccceeccCcee
Confidence 555542 12223345666666554 1 34456677777777665544444456667777777766543
Q ss_pred CccCCccCCCCCCCCEEeCCCCcCCccChhhhcCCCchhHHHHHhhhhhhhhccCCccccCCCccccccCCCCcc-----
Q 047943 260 VIEIPQDIGCLSSLELLFLCGNNFSKFTCKYQSTFTAEKTLLELLQYATVITRASSSSTLFSCNELQAAPVFARA----- 334 (479)
Q Consensus 260 l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~~i~~l~~L~~L~~~L~~n~~~~~~~~~~~l~~C~~L~~lp~lp~~----- 334 (479)
+. ...+..+.+|+.+.+..+ ++.|+...+..+.+|+.+ ++..+ +. ... .....+|.+|+++ .+|..
T Consensus 288 i~--~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i--~lp~~-v~-~I~-~~aF~~c~~L~~i-~lp~~l~~I~ 358 (394)
T 4fs7_A 288 VP--EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSI--DLPYL-VE-EIG-KRSFRGCTSLSNI-NFPLSLRKIG 358 (394)
T ss_dssp EC--TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEE--CCCTT-CC-EEC-TTTTTTCTTCCEE-CCCTTCCEEC
T ss_pred ec--cccccccccccccccccc-cceechhhhcCCCCCCEE--EeCCc-cc-EEh-HHhccCCCCCCEE-EECccccEeh
Confidence 22 234567889999999754 777775678889999999 77543 21 111 1167789999887 34542
Q ss_pred -ccccCCcccc
Q 047943 335 -SIMSTRIRRI 344 (479)
Q Consensus 335 -~~~~~C~~L~ 344 (479)
..|.+|.+|.
T Consensus 359 ~~aF~~C~~L~ 369 (394)
T 4fs7_A 359 ANAFQGCINLK 369 (394)
T ss_dssp TTTBTTCTTCC
T ss_pred HHHhhCCCCCC
Confidence 3488999997
No 145
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.67 E-value=1.6e-09 Score=108.07 Aligned_cols=41 Identities=24% Similarity=0.205 Sum_probs=22.6
Q ss_pred CCCCCCCEEEcCCCCCcc-----CCccCCCCCCCCEEeCCCCcCCc
Q 047943 245 SGLSSLTKLVLTCCDVIE-----IPQDIGCLSSLELLFLCGNNFSK 285 (479)
Q Consensus 245 ~~l~~L~~L~L~~~~l~~-----lp~~l~~l~~L~~L~Ls~n~l~~ 285 (479)
...++|++|+|++|.+++ ++..+...++|++|+|++|.++.
T Consensus 208 ~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 208 DRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp GGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred hcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence 334556666666666553 33334445566666666666553
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.64 E-value=8.6e-08 Score=94.35 Aligned_cols=106 Identities=17% Similarity=0.179 Sum_probs=73.5
Q ss_pred EEecCCCCCCCccchhhhccccCCeeeccC-ccccccCcccccccCCCCCCCCCCCCCCCCeeecCCCccccccCCCcee
Q 047943 152 KLDLGYCSKFECFPEIIEKMERLRSVDLQS-TEVEELPSSMENLEGLKDLPDSLPNLKSLQFLNVERLFSIADLDKLEDL 230 (479)
Q Consensus 152 ~L~L~~c~~l~~~p~~~~~l~~L~~L~L~~-~~i~~lp~~i~~l~~L~~lp~~l~~l~~L~~L~l~~l~~l~~l~~L~~L 230 (479)
.+++++++.+..+|. +..+++|++|+|++ |.+..+|.. .+.++++|+.|
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~-----------------------------~~~~l~~L~~L 61 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELR-----------------------------DLRGLGELRNL 61 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGG-----------------------------GSCSCCCCSEE
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChh-----------------------------HhccccCCCEE
Confidence 345555435666777 77777788888875 777776531 12334556666
Q ss_pred ecCCCCCCCC-CcccCCCCCCCEEEcCCCCCccCCccCCCCCCCCEEeCCCCcCCccC
Q 047943 231 SISGRRGLIL-PPLLSGLSSLTKLVLTCCDVIEIPQDIGCLSSLELLFLCGNNFSKFT 287 (479)
Q Consensus 231 ~l~~~~~~~l-p~~~~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp 287 (479)
+|++|....+ |..+.++++|+.|+|++|.+..+|..+.....|+.|+|.+|.+....
T Consensus 62 ~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~L~~l~l~~N~~~c~c 119 (347)
T 2ifg_A 62 TIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSC 119 (347)
T ss_dssp ECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCCCCEEECCSSCCCCCG
T ss_pred ECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCCceEEEeeCCCccCCC
Confidence 6666775444 44578899999999999999997765544444999999999988654
No 147
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.56 E-value=7e-06 Score=82.21 Aligned_cols=269 Identities=13% Similarity=0.161 Sum_probs=132.2
Q ss_pred CCCCCCC-C-CCC-CceEEECCCCCCcccc-cccCCCCCCcEEEccCC--CCCCCCC--CCCCCCCCcEEeecCCCCCCC
Q 047943 28 LKTLPSN-F-EPE-NLLELNLPYSKIETIW-EVKKEAPKLKYINLHNS--QYLTGMP--DLSETPNLERLNILNCTNLAY 99 (479)
Q Consensus 28 l~~lp~~-~-~~~-~L~~L~L~~s~i~~l~-~~~~~l~~L~~L~Ls~~--~~l~~~p--~l~~l~~L~~L~L~~c~~l~~ 99 (479)
.+.++.. | +++ .|+.+.++.+ ++.+. ..|.++.+|+.+.+..+ ..++.+. .|.++.+|+.+.+... +..
T Consensus 51 Vt~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~--~~~ 127 (394)
T 4gt6_A 51 VSKIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS--VTE 127 (394)
T ss_dssp EEEECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT--CSE
T ss_pred eeEcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc--cce
Confidence 4445443 4 343 4788888754 66664 55777888888887654 2344444 3667777777666542 223
Q ss_pred CC-ccccccCCccccceeeccCCCceecC-ccccCCCCCCEEeccCC--------CCCCCCCEEecCCCCCCCccchhhh
Q 047943 100 IP-SCIHNFNNLRSVIGLCLRNTAIEEVP-SSIESLTKLEKLDLSYC--------TRLKGLCKLDLGYCSKFECFPEIIE 169 (479)
Q Consensus 100 ~p-~~l~~l~~L~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~c--------~~L~~L~~L~L~~c~~l~~~p~~~~ 169 (479)
++ ..+.++.+|+. +.+..+ +..+. ..+..+.+|+.+.+.+. -.-..|+.+.+...- ...-...+.
T Consensus 128 I~~~aF~~c~~L~~---i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~~~~I~~~aF~~~~l~~i~ip~~~-~~i~~~af~ 202 (394)
T 4gt6_A 128 IDSEAFHHCEELDT---VTIPEG-VTSVADGMFSYCYSLHTVTLPDSVTAIEERAFTGTALTQIHIPAKV-TRIGTNAFS 202 (394)
T ss_dssp ECTTTTTTCTTCCE---EECCTT-CCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCCCSEEEECTTC-CEECTTTTT
T ss_pred ehhhhhhhhccccc---ccccce-eeeecccceecccccccccccceeeEeccccccccceeEEEECCcc-cccccchhh
Confidence 22 22334444333 444322 12222 23445556666655431 011234444433210 111112233
Q ss_pred ccccCCeeeccCccccccCcccc--------------cccCCCC--CC--------CCCCCCCCCCeeecCC-C-----c
Q 047943 170 KMERLRSVDLQSTEVEELPSSME--------------NLEGLKD--LP--------DSLPNLKSLQFLNVER-L-----F 219 (479)
Q Consensus 170 ~l~~L~~L~L~~~~i~~lp~~i~--------------~l~~L~~--lp--------~~l~~l~~L~~L~l~~-l-----~ 219 (479)
++.+++...........+...+. ....+.. +| ..+.++..|+.+.+.. . .
T Consensus 203 ~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp~~~~~I~~~ 282 (394)
T 4gt6_A 203 ECFALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNGVARIETHAFDSCAYLASVKMPDSVVSIGTG 282 (394)
T ss_dssp TCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTTEEEECTTTTTTCSSCCEEECCTTCCEECTT
T ss_pred hccccceecccccccccccceeecccccccccccccccccccceEEcCCcceEcccceeeecccccEEecccccceecCc
Confidence 44444444333222111111000 0000000 12 3455666777776654 1 3
Q ss_pred cccccCCCceeecCCCCCCCCCcccCCCCCCCEEEcCCCCCccC-CccCCCCCCCCEEeCCCCcCCccChhhhcCCCchh
Q 047943 220 SIADLDKLEDLSISGRRGLILPPLLSGLSSLTKLVLTCCDVIEI-PQDIGCLSSLELLFLCGNNFSKFTCKYQSTFTAEK 298 (479)
Q Consensus 220 ~l~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~l-p~~l~~l~~L~~L~Ls~n~l~~lp~~~i~~l~~L~ 298 (479)
.+.++++|+.+.+...-...-...|.++.+|+.+.+..+ ++.+ ...+..+.+|+.+.|..+ ++.|....+..+.+|+
T Consensus 283 aF~~c~~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~ 360 (394)
T 4gt6_A 283 AFMNCPALQDIEFSSRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALN 360 (394)
T ss_dssp TTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCC
T ss_pred ccccccccccccCCCcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCC
Confidence 445667777777754332222334666777777777643 4443 345667777777777543 6666645666777777
Q ss_pred HHHHHhhhhh
Q 047943 299 TLLELLQYAT 308 (479)
Q Consensus 299 ~L~~~L~~n~ 308 (479)
.+ ++.++.
T Consensus 361 ~i--~~~~~~ 368 (394)
T 4gt6_A 361 NI--EYSGSR 368 (394)
T ss_dssp EE--EESSCH
T ss_pred EE--EECCce
Confidence 76 555443
No 148
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.55 E-value=1.1e-08 Score=102.13 Aligned_cols=149 Identities=16% Similarity=0.150 Sum_probs=78.4
Q ss_pred CCceEEECCCCCCcc-----cccccC-CCCCCcEEEccCCCCCCCC-CCC-CCCCCCcEEeecCCCCCCCCCcccccc--
Q 047943 38 ENLLELNLPYSKIET-----IWEVKK-EAPKLKYINLHNSQYLTGM-PDL-SETPNLERLNILNCTNLAYIPSCIHNF-- 107 (479)
Q Consensus 38 ~~L~~L~L~~s~i~~-----l~~~~~-~l~~L~~L~Ls~~~~l~~~-p~l-~~l~~L~~L~L~~c~~l~~~p~~l~~l-- 107 (479)
++|++|+|++|.+.. +...+. ..++|+.|+|++|..-... ..+ ..+++|++|+|++|.........+...
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 566777777777653 222222 2357777777776432111 112 234567777777764322211222111
Q ss_pred CCccccceeeccCCCcee-----cCccccCCCCCCEEeccCCC--------------CCCCCCEEecCCCCCCC----cc
Q 047943 108 NNLRSVIGLCLRNTAIEE-----VPSSIESLTKLEKLDLSYCT--------------RLKGLCKLDLGYCSKFE----CF 164 (479)
Q Consensus 108 ~~L~~L~~L~L~~~~i~~-----lp~~i~~l~~L~~L~L~~c~--------------~L~~L~~L~L~~c~~l~----~~ 164 (479)
.....|+.|+|++|.+.. ++..+..+++|++|+|++|. ..++|++|+|++|.... .+
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l 231 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL 231 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence 123446667777776642 34445566667777666642 23456666666665442 23
Q ss_pred chhhhccccCCeeeccCccccc
Q 047943 165 PEIIEKMERLRSVDLQSTEVEE 186 (479)
Q Consensus 165 p~~~~~l~~L~~L~L~~~~i~~ 186 (479)
+..+...++|++|++++|.|..
T Consensus 232 ~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 232 ARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HHHHHHCSSCCEEECTTSSCCH
T ss_pred HHHHHhCCCCCEEeccCCCCCH
Confidence 3445555667777777776654
No 149
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.44 E-value=4e-07 Score=89.54 Aligned_cols=73 Identities=23% Similarity=0.263 Sum_probs=40.5
Q ss_pred EEecCC-CCCCCCCCC-CCCCceEEECCC-CCCcccc-cccCCCCCCcEEEccCCCCCCCCC-CCCCCCCCcEEeecCC
Q 047943 21 LHWYEY-PLKTLPSNF-EPENLLELNLPY-SKIETIW-EVKKEAPKLKYINLHNSQYLTGMP-DLSETPNLERLNILNC 94 (479)
Q Consensus 21 L~~~~~-~l~~lp~~~-~~~~L~~L~L~~-s~i~~l~-~~~~~l~~L~~L~Ls~~~~l~~~p-~l~~l~~L~~L~L~~c 94 (479)
++..+. .++.+|. + .+.+|++|+|++ |+++.++ ..+..+++|+.|+|++|..-...| .|.++++|++|+|++|
T Consensus 13 v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 13 LRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp EECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 455555 5666666 4 555666666664 6666555 345566666666666654333233 2455555655555554
No 150
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.34 E-value=6.1e-05 Score=74.73 Aligned_cols=95 Identities=19% Similarity=0.207 Sum_probs=46.4
Q ss_pred CCCCCCCeeecCC-C-----ccccccCCCceeecCCCCCCCCCcccCCCCCCCEEEcCCCCCccC-CccCCCCCCCCEEe
Q 047943 205 PNLKSLQFLNVER-L-----FSIADLDKLEDLSISGRRGLILPPLLSGLSSLTKLVLTCCDVIEI-PQDIGCLSSLELLF 277 (479)
Q Consensus 205 ~~l~~L~~L~l~~-l-----~~l~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~l-p~~l~~l~~L~~L~ 277 (479)
.++..|+.+.+.. + ..+.++.+|+.+.+...-...-...+.++++|+.+.+.++.+..+ ...+.++.+|+.+.
T Consensus 237 ~~~~~L~~i~lp~~v~~I~~~aF~~~~~l~~i~l~~~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~ 316 (379)
T 4h09_A 237 YGMKALDEIAIPKNVTSIGSFLLQNCTALKTLNFYAKVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVT 316 (379)
T ss_dssp TTCSSCCEEEECTTCCEECTTTTTTCTTCCEEEECCCCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEE
T ss_pred cCCccceEEEcCCCccEeCccccceeehhccccccccceeccccccccccccccccccccccceehhhhhcCCCCCCEEE
Confidence 3444555554433 1 233344555555554332222222345556666666666555553 23455566666666
Q ss_pred CCCCcCCccChhhhcCCCchhHH
Q 047943 278 LCGNNFSKFTCKYQSTFTAEKTL 300 (479)
Q Consensus 278 Ls~n~l~~lp~~~i~~l~~L~~L 300 (479)
|..+ ++.|....+..+.+|+.+
T Consensus 317 lp~~-l~~I~~~aF~~C~~L~~i 338 (379)
T 4h09_A 317 LPTA-LKTIQVYAFKNCKALSTI 338 (379)
T ss_dssp CCTT-CCEECTTTTTTCTTCCCC
T ss_pred cCcc-ccEEHHHHhhCCCCCCEE
Confidence 6432 555543445555555555
No 151
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.24 E-value=5.3e-05 Score=75.74 Aligned_cols=269 Identities=14% Similarity=0.188 Sum_probs=135.9
Q ss_pred CceEEEecCCCCCCCCC-CC-CCCCceEEECCCC---CCcccc-cccCCCCCCcEEEccCCCCCCCCC--CCCCCCCCcE
Q 047943 17 ELRYLHWYEYPLKTLPS-NF-EPENLLELNLPYS---KIETIW-EVKKEAPKLKYINLHNSQYLTGMP--DLSETPNLER 88 (479)
Q Consensus 17 ~Lr~L~~~~~~l~~lp~-~~-~~~~L~~L~L~~s---~i~~l~-~~~~~l~~L~~L~Ls~~~~l~~~p--~l~~l~~L~~ 88 (479)
.|+.+.+-. .++.+.. .| ++.+|+.+.+..+ .++.+. ..+..+.+|+.+.+..+ ++.++ .|..+.+|+.
T Consensus 65 ~L~sI~iP~-svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~--~~~I~~~aF~~c~~L~~ 141 (394)
T 4gt6_A 65 VLTSVQIPD-TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS--VTEIDSEAFHHCEELDT 141 (394)
T ss_dssp CCCEEEECT-TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT--CSEECTTTTTTCTTCCE
T ss_pred cCEEEEECC-CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc--cceehhhhhhhhccccc
Confidence 466666654 2566654 35 7788888887654 366554 44666777777766554 34443 4677777777
Q ss_pred EeecCCCCCCCCC-ccccccCCccccceeeccCCCceecCccccCCCCCCEEeccC---------CCCCCCCCEEecCCC
Q 047943 89 LNILNCTNLAYIP-SCIHNFNNLRSVIGLCLRNTAIEEVPSSIESLTKLEKLDLSY---------CTRLKGLCKLDLGYC 158 (479)
Q Consensus 89 L~L~~c~~l~~~p-~~l~~l~~L~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~---------c~~L~~L~~L~L~~c 158 (479)
+.+... +..++ ..+.++..|.. +.+..+ +..+........+|+.+.+.. ..++.+++.......
T Consensus 142 i~lp~~--~~~I~~~~F~~c~~L~~---i~~~~~-~~~I~~~aF~~~~l~~i~ip~~~~~i~~~af~~c~~l~~~~~~~~ 215 (394)
T 4gt6_A 142 VTIPEG--VTSVADGMFSYCYSLHT---VTLPDS-VTAIEERAFTGTALTQIHIPAKVTRIGTNAFSECFALSTITSDSE 215 (394)
T ss_dssp EECCTT--CCEECTTTTTTCTTCCE---EECCTT-CCEECTTTTTTCCCSEEEECTTCCEECTTTTTTCTTCCEEEECCS
T ss_pred ccccce--eeeecccceeccccccc---ccccce-eeEeccccccccceeEEEECCcccccccchhhhccccceeccccc
Confidence 777542 22222 22333333332 333322 222322222223444444432 112222222222111
Q ss_pred CCCCccchh--------------hhccccCCeeeccCccccccC-cccccccCCCC--CC--------CCCCCCCCCCee
Q 047943 159 SKFECFPEI--------------IEKMERLRSVDLQSTEVEELP-SSMENLEGLKD--LP--------DSLPNLKSLQFL 213 (479)
Q Consensus 159 ~~l~~~p~~--------------~~~l~~L~~L~L~~~~i~~lp-~~i~~l~~L~~--lp--------~~l~~l~~L~~L 213 (479)
... ..... ......+..+.+. +.+..+. ..+.+|..|+. +| ..+.++..|+.+
T Consensus 216 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip-~~v~~i~~~aF~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i 293 (394)
T 4gt6_A 216 SYP-AIDNVLYEKSANGDYALIRYPSQREDPAFKIP-NGVARIETHAFDSCAYLASVKMPDSVVSIGTGAFMNCPALQDI 293 (394)
T ss_dssp SSC-BSSSCEEEECTTSCEEEEECCTTCCCSEEECC-TTEEEECTTTTTTCSSCCEEECCTTCCEECTTTTTTCTTCCEE
T ss_pred ccc-cccceeecccccccccccccccccccceEEcC-CcceEcccceeeecccccEEecccccceecCcccccccccccc
Confidence 000 00000 0000011111111 0111111 12334444443 22 345677888888
Q ss_pred ecCC-C-----ccccccCCCceeecCCCCCCCCCcccCCCCCCCEEEcCCCCCccCC-ccCCCCCCCCEEeCCCCcCCcc
Q 047943 214 NVER-L-----FSIADLDKLEDLSISGRRGLILPPLLSGLSSLTKLVLTCCDVIEIP-QDIGCLSSLELLFLCGNNFSKF 286 (479)
Q Consensus 214 ~l~~-l-----~~l~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~lp-~~l~~l~~L~~L~Ls~n~l~~l 286 (479)
.+.. + ..+.++.+|+.+.+..+-...-...|.++.+|+.+.+..+ ++.+. ..+.++++|+.+++.++... +
T Consensus 294 ~l~~~i~~I~~~aF~~c~~L~~i~lp~~v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~-~ 371 (394)
T 4gt6_A 294 EFSSRITELPESVFAGCISLKSIDIPEGITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ-W 371 (394)
T ss_dssp ECCTTCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH-H
T ss_pred cCCCcccccCceeecCCCCcCEEEeCCcccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee-h
Confidence 8765 2 4567789999999976543334456888999999999654 66654 56889999999999887422 1
Q ss_pred ChhhhcCCCchhHH
Q 047943 287 TCKYQSTFTAEKTL 300 (479)
Q Consensus 287 p~~~i~~l~~L~~L 300 (479)
..+..+..|+.+
T Consensus 372 --~~~~~~~~L~~i 383 (394)
T 4gt6_A 372 --NAISTDSGLQNL 383 (394)
T ss_dssp --HTCBCCCCC---
T ss_pred --hhhhccCCCCEE
Confidence 234445556665
No 152
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.18 E-value=3.8e-05 Score=76.28 Aligned_cols=97 Identities=13% Similarity=0.129 Sum_probs=66.0
Q ss_pred CCCCCCCCCeeecCC-C-----ccccccCCCceeecCCCCCCCCCcccCCCCCCCEEEcCCCCCccCC-ccCCCCCCCCE
Q 047943 203 SLPNLKSLQFLNVER-L-----FSIADLDKLEDLSISGRRGLILPPLLSGLSSLTKLVLTCCDVIEIP-QDIGCLSSLEL 275 (479)
Q Consensus 203 ~l~~l~~L~~L~l~~-l-----~~l~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~lp-~~l~~l~~L~~ 275 (479)
.+..+..|+.+.+.. + ..+.++..|+.+.+..+-...-...+.++.+|+.+.+... +..++ ..+..+++|+.
T Consensus 212 ~f~~~~~l~~i~~~~~~~~i~~~~f~~~~~L~~i~lp~~v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~ 290 (379)
T 4h09_A 212 GFSYGKNLKKITITSGVTTLGDGAFYGMKALDEIAIPKNVTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTK 290 (379)
T ss_dssp TTTTCSSCSEEECCTTCCEECTTTTTTCSSCCEEEECTTCCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCE
T ss_pred ccccccccceeeeccceeEEccccccCCccceEEEcCCCccEeCccccceeehhcccccccc-ceecccccccccccccc
Confidence 344556666666654 1 3455677888888866543333345667788888888653 55543 45678889999
Q ss_pred EeCCCCcCCccChhhhcCCCchhHH
Q 047943 276 LFLCGNNFSKFTCKYQSTFTAEKTL 300 (479)
Q Consensus 276 L~Ls~n~l~~lp~~~i~~l~~L~~L 300 (479)
+.+.++.++.|+...+..+.+|+.+
T Consensus 291 i~l~~~~i~~I~~~aF~~c~~L~~i 315 (379)
T 4h09_A 291 VVMDNSAIETLEPRVFMDCVKLSSV 315 (379)
T ss_dssp EEECCTTCCEECTTTTTTCTTCCEE
T ss_pred ccccccccceehhhhhcCCCCCCEE
Confidence 9998888888875677788888877
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.12 E-value=2.5e-06 Score=84.42 Aligned_cols=58 Identities=19% Similarity=0.256 Sum_probs=36.5
Q ss_pred CCCCceEEECCCCCCc----------ccccccCCCCCCcEEEccCCCCCCCCCCCCCCCCCcEEeecCCC
Q 047943 36 EPENLLELNLPYSKIE----------TIWEVKKEAPKLKYINLHNSQYLTGMPDLSETPNLERLNILNCT 95 (479)
Q Consensus 36 ~~~~L~~L~L~~s~i~----------~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c~ 95 (479)
.+++|+.|.+.....+ .+...+..+++|+.|+|+++..+. ++.+. +++|++|++..|.
T Consensus 137 ~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~-l~~~~-~~~L~~L~L~~~~ 204 (362)
T 2ra8_A 137 KFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLS-IGKKP-RPNLKSLEIISGG 204 (362)
T ss_dssp HHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCB-CCSCB-CTTCSEEEEECSB
T ss_pred hcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCce-ecccc-CCCCcEEEEecCC
Confidence 4568888877543221 133334567888888888774332 33343 7788888887765
No 154
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.98 E-value=3.3e-06 Score=74.17 Aligned_cols=68 Identities=19% Similarity=0.330 Sum_probs=47.1
Q ss_pred CCCCCC-CCCCceEEECCCCCCccc-ccccCCCCCCcEEEccCCCCCCCCC--CCCCC----CCCcEEeecCCCCC
Q 047943 30 TLPSNF-EPENLLELNLPYSKIETI-WEVKKEAPKLKYINLHNSQYLTGMP--DLSET----PNLERLNILNCTNL 97 (479)
Q Consensus 30 ~lp~~~-~~~~L~~L~L~~s~i~~l-~~~~~~l~~L~~L~Ls~~~~l~~~p--~l~~l----~~L~~L~L~~c~~l 97 (479)
.+|..+ ...+|++|++++|.|+.. ...+..+++|+.|+|++|..+++-- .++.+ ++|++|+|++|..+
T Consensus 52 ~LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~I 127 (176)
T 3e4g_A 52 HLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNV 127 (176)
T ss_dssp GSCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTC
T ss_pred cCCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcC
Confidence 567655 556799999998887632 2445678888888888887766522 34443 46888888888765
No 155
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.97 E-value=2.3e-06 Score=84.73 Aligned_cols=158 Identities=17% Similarity=0.250 Sum_probs=94.9
Q ss_pred cCCCccCceEEEecCCCCC----------CCCCCC-CCCCceEEECCCCCCcccccccCCCCCCcEEEccCCCCCCCC-C
Q 047943 11 LEYLPEELRYLHWYEYPLK----------TLPSNF-EPENLLELNLPYSKIETIWEVKKEAPKLKYINLHNSQYLTGM-P 78 (479)
Q Consensus 11 ~~~l~~~Lr~L~~~~~~l~----------~lp~~~-~~~~L~~L~L~~s~i~~l~~~~~~l~~L~~L~Ls~~~~l~~~-p 78 (479)
...+| +||.|.+.+...+ .++..+ .+++|++|.|+++.-..++. +. +++|+.|++..|....+. .
T Consensus 135 ~~~l~-~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~-~~-~~~L~~L~L~~~~l~~~~l~ 211 (362)
T 2ra8_A 135 KEKFA-HFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK-KP-RPNLKSLEIISGGLPDSVVE 211 (362)
T ss_dssp HHHHT-TCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS-CB-CTTCSEEEEECSBCCHHHHH
T ss_pred hhhcc-hhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc-cc-CCCCcEEEEecCCCChHHHH
Confidence 44556 8999988664332 233323 67899999998873223433 33 889999999877532211 1
Q ss_pred CC--CCCCCCcEEeecCCCCC--C-----CCCccccccCCccccceeeccCCCcee-cCccc---cCCCCCCEEeccCCC
Q 047943 79 DL--SETPNLERLNILNCTNL--A-----YIPSCIHNFNNLRSVIGLCLRNTAIEE-VPSSI---ESLTKLEKLDLSYCT 145 (479)
Q Consensus 79 ~l--~~l~~L~~L~L~~c~~l--~-----~~p~~l~~l~~L~~L~~L~L~~~~i~~-lp~~i---~~l~~L~~L~L~~c~ 145 (479)
.+ ..+|+|++|+|..+... . .+...+. -..+++|+.|+|.+|.+.. .+..+ ..+++|+.|+|+.
T Consensus 212 ~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~-~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~-- 288 (362)
T 2ra8_A 212 DILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFS-KDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISA-- 288 (362)
T ss_dssp HHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSC-TTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCS--
T ss_pred HHHHccCCCCcEEEEeccccccccchhHHHHHHHHh-cCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCC--
Confidence 22 37899999998642211 1 1111111 1346778889999988752 22222 2455666666654
Q ss_pred CCCCCCEEecCCCCCCC----ccchhhhccccCCeeeccCccccc
Q 047943 146 RLKGLCKLDLGYCSKFE----CFPEIIEKMERLRSVDLQSTEVEE 186 (479)
Q Consensus 146 ~L~~L~~L~L~~c~~l~----~~p~~~~~l~~L~~L~L~~~~i~~ 186 (479)
|.... .++..+..+++|+.|++++|.+.+
T Consensus 289 ------------n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 289 ------------GVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp ------------SCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred ------------CCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence 33222 255666777888888888887764
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.60 E-value=2.2e-05 Score=69.88 Aligned_cols=42 Identities=14% Similarity=-0.011 Sum_probs=26.4
Q ss_pred ccCCCCCCCEEEc--CCCCCcc-----CCccCCCCCCCCEEeCCCCcCC
Q 047943 243 LLSGLSSLTKLVL--TCCDVIE-----IPQDIGCLSSLELLFLCGNNFS 284 (479)
Q Consensus 243 ~~~~l~~L~~L~L--~~~~l~~-----lp~~l~~l~~L~~L~Ls~n~l~ 284 (479)
.+...++|++|+| ++|.+.+ +...+...++|++|+|++|.+.
T Consensus 116 ~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 116 ALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp GGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 3444566777777 6676664 3444555667777777777654
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.55 E-value=6.4e-06 Score=73.36 Aligned_cols=64 Identities=11% Similarity=0.028 Sum_probs=48.8
Q ss_pred cCCCCCCCEEEcCCCCCcc-----CCccCCCCCCCCEEeC--CCCcCCc-----cChhhhcCCCchhHHHHHhhhhhhh
Q 047943 244 LSGLSSLTKLVLTCCDVIE-----IPQDIGCLSSLELLFL--CGNNFSK-----FTCKYQSTFTAEKTLLELLQYATVI 310 (479)
Q Consensus 244 ~~~l~~L~~L~L~~~~l~~-----lp~~l~~l~~L~~L~L--s~n~l~~-----lp~~~i~~l~~L~~L~~~L~~n~~~ 310 (479)
+...++|++|+|++|.+.+ +...+...++|++|+| ++|.++. +. ..+...++|++| ++++|.+.
T Consensus 89 L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~-~~L~~n~~L~~L--~L~~n~i~ 164 (185)
T 1io0_A 89 LKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIA-NMLEKNTTLLKF--GYHFTQQG 164 (185)
T ss_dssp HHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHH-HHHHHCSSCCEE--ECCCSSHH
T ss_pred HHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHH-HHHHhCCCcCEE--eccCCCCC
Confidence 3345789999999999886 5677788889999999 8898873 44 556666788888 77666653
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.49 E-value=8e-06 Score=76.95 Aligned_cols=41 Identities=22% Similarity=0.332 Sum_probs=26.8
Q ss_pred ccCCCCCCCEEEcCCCCCccCCccCCCCC--CCCEEeCCCCcCC
Q 047943 243 LLSGLSSLTKLVLTCCDVIEIPQDIGCLS--SLELLFLCGNNFS 284 (479)
Q Consensus 243 ~~~~l~~L~~L~L~~~~l~~lp~~l~~l~--~L~~L~Ls~n~l~ 284 (479)
.+..+++|+.|+|++|.+.++. .+..+. +|++|+|++|.+.
T Consensus 191 ~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 191 IVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLC 233 (267)
T ss_dssp HHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTG
T ss_pred HHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCc
Confidence 3445677777777777777642 223333 7888888888765
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.45 E-value=1.1e-05 Score=70.81 Aligned_cols=87 Identities=11% Similarity=0.030 Sum_probs=43.5
Q ss_pred CCCCEEEcCCCCCcc-CCccCCCCCCCCEEeCCCCc-CCccChhhhcCC----CchhHHHHHhhhhhhhhccCCccccCC
Q 047943 248 SSLTKLVLTCCDVIE-IPQDIGCLSSLELLFLCGNN-FSKFTCKYQSTF----TAEKTLLELLQYATVITRASSSSTLFS 321 (479)
Q Consensus 248 ~~L~~L~L~~~~l~~-lp~~l~~l~~L~~L~Ls~n~-l~~lp~~~i~~l----~~L~~L~~~L~~n~~~~~~~~~~~l~~ 321 (479)
..|+.|++++|.+++ --..+..+++|+.|+|++|. ++.--...+..+ ++|+.| +|++|..+|+..+. .+..
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L--~Ls~C~~ITD~Gl~-~L~~ 137 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEM--EIISCGNVTDKGII-ALHH 137 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEE--EEESCTTCCHHHHH-HGGG
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEE--EcCCCCcCCHHHHH-HHhc
Confidence 356666666666554 12224556666666666664 543222233332 245666 55555544443332 2334
Q ss_pred CccccccCCCCccccccCCcccc
Q 047943 322 CNELQAAPVFARASIMSTRIRRI 344 (479)
Q Consensus 322 C~~L~~lp~lp~~~~~~~C~~L~ 344 (479)
|++|+.+ ...+|++++
T Consensus 138 ~~~L~~L-------~L~~c~~It 153 (176)
T 3e4g_A 138 FRNLKYL-------FLSDLPGVK 153 (176)
T ss_dssp CTTCCEE-------EEESCTTCC
T ss_pred CCCCCEE-------ECCCCCCCC
Confidence 5555544 456676665
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.04 E-value=9.5e-05 Score=69.56 Aligned_cols=63 Identities=16% Similarity=0.184 Sum_probs=51.7
Q ss_pred CCCCCCCEEEcCCCCCccC---CccCCCCCCCCEEeCCCCcCCccChhhhcCCC--chhHHHHHhhhhhhhh
Q 047943 245 SGLSSLTKLVLTCCDVIEI---PQDIGCLSSLELLFLCGNNFSKFTCKYQSTFT--AEKTLLELLQYATVIT 311 (479)
Q Consensus 245 ~~l~~L~~L~L~~~~l~~l---p~~l~~l~~L~~L~Ls~n~l~~lp~~~i~~l~--~L~~L~~~L~~n~~~~ 311 (479)
..+++|+.|+|++|.+.++ |..+..+++|+.|+|++|.++.+. .+..+. +|+.| +|++|.+..
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~--~l~~l~~l~L~~L--~L~~Npl~~ 234 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER--ELDKIKGLKLEEL--WLDGNSLCD 234 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG--GGGGGTTSCCSEE--ECTTSTTGG
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch--hhhhcccCCcceE--EccCCcCcc
Confidence 4578999999999999874 456678999999999999999874 455555 89999 888888754
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.16 E-value=0.012 Score=48.60 Aligned_cols=44 Identities=27% Similarity=0.407 Sum_probs=25.8
Q ss_pred CCCcccCCCCCCCEEEcCCCCCccCCcc-CCCCCCCCEEeCCCCcCC
Q 047943 239 ILPPLLSGLSSLTKLVLTCCDVIEIPQD-IGCLSSLELLFLCGNNFS 284 (479)
Q Consensus 239 ~lp~~~~~l~~L~~L~L~~~~l~~lp~~-l~~l~~L~~L~Ls~n~l~ 284 (479)
.+|..+ .++|+.|+|++|.++.+|.. +..+++|+.|+|++|.+.
T Consensus 24 ~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 24 SLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred cCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 555432 24566667776666665433 455666666666666554
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.85 E-value=0.044 Score=45.21 Aligned_cols=52 Identities=21% Similarity=0.271 Sum_probs=33.4
Q ss_pred EEEecCCCCC--CCCCCCCCCCceEEECCCCCCcccccc-cCCCCCCcEEEccCCC
Q 047943 20 YLHWYEYPLK--TLPSNFEPENLLELNLPYSKIETIWEV-KKEAPKLKYINLHNSQ 72 (479)
Q Consensus 20 ~L~~~~~~l~--~lp~~~~~~~L~~L~L~~s~i~~l~~~-~~~l~~L~~L~Ls~~~ 72 (479)
.++.++..++ .+|..+ +.+|++|+|++|+|+.++.+ +..+++|+.|+|++|.
T Consensus 12 ~v~Cs~~~L~~~~vP~~l-p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF-PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCSSCCCTTTSCSCC-CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCCCCCccccCCCCC-CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 5666666666 777553 34577777777777776543 4556666666666653
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=93.56 E-value=0.012 Score=52.22 Aligned_cols=34 Identities=12% Similarity=-0.048 Sum_probs=17.2
Q ss_pred CCCCEEEcCCCCCcc-----CCccCCCCCCCCEEeCCCC
Q 047943 248 SSLTKLVLTCCDVIE-----IPQDIGCLSSLELLFLCGN 281 (479)
Q Consensus 248 ~~L~~L~L~~~~l~~-----lp~~l~~l~~L~~L~Ls~n 281 (479)
+.|++|+|++|.+.+ +.+.+..-+.|++|+|++|
T Consensus 98 ~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 98 PSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp SSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred CccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 445555555555543 3344444455555555543
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=90.74 E-value=0.043 Score=48.73 Aligned_cols=81 Identities=14% Similarity=0.101 Sum_probs=56.4
Q ss_pred cCCCceeecCCC-CC-----CCCCcccCCCCCCCEEEcCCCCCcc-----CCccCCCCCCCCEEeCCCCcCC-----ccC
Q 047943 224 LDKLEDLSISGR-RG-----LILPPLLSGLSSLTKLVLTCCDVIE-----IPQDIGCLSSLELLFLCGNNFS-----KFT 287 (479)
Q Consensus 224 l~~L~~L~l~~~-~~-----~~lp~~~~~l~~L~~L~L~~~~l~~-----lp~~l~~l~~L~~L~Ls~n~l~-----~lp 287 (479)
-+.|++|+++++ .. ..+-..+..-+.|+.|+|++|.+.+ +.+.+..-+.|+.|+|++|.|. .|-
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala 119 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL 119 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence 356777777765 32 1233345556889999999999986 5555667789999999999987 333
Q ss_pred hhhhcCCCchhHHHHHhhhh
Q 047943 288 CKYQSTFTAEKTLLELLQYA 307 (479)
Q Consensus 288 ~~~i~~l~~L~~L~~~L~~n 307 (479)
..+..-..|+.| +|++|
T Consensus 120 -~aL~~N~tL~~L--~L~n~ 136 (197)
T 1pgv_A 120 -RSTLVTQSIVEF--KADNQ 136 (197)
T ss_dssp -HHTTTTCCCSEE--ECCCC
T ss_pred -HHHhhCCceeEE--ECCCC
Confidence 455566678888 66543
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=24.90 E-value=99 Score=23.36 Aligned_cols=36 Identities=14% Similarity=0.148 Sum_probs=19.5
Q ss_pred ccCCCCCCcEEEccCCCCCCCCC--CCCCCCCCcEEeecC
Q 047943 56 VKKEAPKLKYINLHNSQYLTGMP--DLSETPNLERLNILN 93 (479)
Q Consensus 56 ~~~~l~~L~~L~Ls~~~~l~~~p--~l~~l~~L~~L~L~~ 93 (479)
.|..+.+|+.+.+-.+ ++.+. .|.++.+|+.+.+.+
T Consensus 15 aF~~c~~L~~i~iP~~--v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 15 LFAGNTVIREITVQPN--IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp TTTTCTTCCCEEECTT--SSCCCTTSSTTCTTCCCEEECC
T ss_pred HhcCCCCCcEEEcCCc--hheEcHHHHhccCCccEEEEcC
Confidence 3455556666655543 33332 366666666666654
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=21.36 E-value=1e+02 Score=23.23 Aligned_cols=13 Identities=54% Similarity=0.835 Sum_probs=5.4
Q ss_pred cCCCCCCCEEEcC
Q 047943 244 LSGLSSLTKLVLT 256 (479)
Q Consensus 244 ~~~l~~L~~L~L~ 256 (479)
|.++.+|+.+.+.
T Consensus 39 F~~C~~L~~i~~~ 51 (100)
T 2lz0_A 39 FSGCTALEKLILT 51 (100)
T ss_dssp STTCTTCCCEEEC
T ss_pred HhccCCccEEEEc
Confidence 3344444444443
Done!