BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047945
(482 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
Length = 465
Score = 371 bits (953), Expect = e-103, Method: Compositional matrix adjust.
Identities = 210/504 (41%), Positives = 289/504 (57%), Gaps = 63/504 (12%)
Query: 1 MTMRKLN----LVFTSTPGIGNLVPVVEFARLLTNRDRRFSATVLIITIPERPIVNSYIQ 56
M+M +N L+F PGIG+L +EFA+LLTN D+ TV I P P +SYI+
Sbjct: 1 MSMSDINKNSELIFIPAPGIGHLASALEFAKLLTNHDKNLYITVFCIKFPGMPFADSYIK 60
Query: 57 TRGTALSVHDNDDVNFLHLPTVDPLSPDEYQSSLGYLCTLIEKHKPHVKHAIANLMATES 116
+ + + + LP V+P + +S Y+ T +E PHVK I +++
Sbjct: 61 S-----VLASQPQIQLIDLPEVEPPPQELLKSPEFYILTFLESLIPHVKATIKTILSN-- 113
Query: 117 GSDNAVSVRVAGLFVDMFCTSMIDVANELGIPSYLYFASPASFLGFLLYFPTLDAQLATE 176
+V GL +D FC SMIDV NE GIPSYL+ S FL +L + Q+
Sbjct: 114 --------KVVGLVLDFFCVSMIDVGNEFGIPSYLFLTSNVGFLSLMLSLK--NRQIEEV 163
Query: 177 FVDSDTELIVPKDSSITELKIPSFANXXXXXXXXXXXXKRKQDGYMWYLYHGRRYLETKG 236
F DSD +D + L IP +N K GY+ Y R+ +TKG
Sbjct: 164 FDDSD------RDHQL--LNIPGISNQVPSNVLPDACF-NKDGGYIAYYKLAERFRDTKG 214
Query: 237 MIVNTFQELEPYAIDSL--RVTEMPPVYPIGPVLDLHGLAQWHPDRASQEKIMRWLDDQP 294
+IVNTF +LE +ID+L ++PP+Y +GP+LDL G D+A + I++WLD+QP
Sbjct: 215 IIVNTFSDLEQSSIDALYDHDEKIPPIYAVGPLLDLKGQPNPKLDQAQHDLILKWLDEQP 274
Query: 295 PSSVVFLCFGSMG-SLSEAQLREIAVGLERTGFRFLWSIREPSKGTIYLPGEYTNLEEIL 353
SVVFLCFGSMG S +Q+REIA+GL+ +G RFLWS K +
Sbjct: 275 DKSVVFLCFGSMGVSFGPSQIREIALGLKHSGVRFLWSNSAEKK--------------VF 320
Query: 354 PEGFFHRTAKIGL----------------AVGGFVSHCGWNSILESLWFGVPMATWPVYA 397
PEGF G A+GGFVSHCGWNSILES+WFGVP+ TWP+YA
Sbjct: 321 PEGFLEWMELEGKGMICGWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYA 380
Query: 398 EQQMNAFQLVKEFGLAVEIRLDYREGSDLVLAEELEKGLQQLMDGDDQVRRKVKQMKEKS 457
EQQ+NAF+LVKE+G+ + +R+DYR+GSD+V AEE+EKGL+ LMD D V +KV++MKE S
Sbjct: 381 EQQLNAFRLVKEWGVGLGLRVDYRKGSDVVAAEEIEKGLKDLMDKDSIVHKKVQEMKEMS 440
Query: 458 RTAMMEDGSSYKSLGSLIEELMAN 481
R A+++ GSS S+G LI+++ +
Sbjct: 441 RNAVVDGGSSLISVGKLIDDITGS 464
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 371 bits (953), Expect = e-103, Method: Compositional matrix adjust.
Identities = 210/501 (41%), Positives = 288/501 (57%), Gaps = 63/501 (12%)
Query: 1 MTMRKLN----LVFTSTPGIGNLVPVVEFARLLTNRDRRFSATVLIITIPERPIVNSYIQ 56
M+M +N L+F PGIG+L +EFA+LLTN D+ TV I P P +SYI+
Sbjct: 1 MSMSDINKNSELIFIPAPGIGHLASALEFAKLLTNHDKNLYITVFCIKFPGMPFADSYIK 60
Query: 57 TRGTALSVHDNDDVNFLHLPTVDPLSPDEYQSSLGYLCTLIEKHKPHVKHAIANLMATES 116
+ + + + LP V+P + +S Y+ T +E PHVK I +++
Sbjct: 61 S-----VLASQPQIQLIDLPEVEPPPQELLKSPEFYILTFLESLIPHVKATIKTILSN-- 113
Query: 117 GSDNAVSVRVAGLFVDMFCTSMIDVANELGIPSYLYFASPASFLGFLLYFPTLDAQLATE 176
+V GL +D FC SMIDV NE GIPSYL+ S FL +L + Q+
Sbjct: 114 --------KVVGLVLDFFCVSMIDVGNEFGIPSYLFLTSNVGFLSLMLSLK--NRQIEEV 163
Query: 177 FVDSDTELIVPKDSSITELKIPSFANXXXXXXXXXXXXKRKQDGYMWYLYHGRRYLETKG 236
F DSD +D + L IP +N K GY+ Y R+ +TKG
Sbjct: 164 FDDSD------RDHQL--LNIPGISNQVPSNVLPDACF-NKDGGYIAYYKLAERFRDTKG 214
Query: 237 MIVNTFQELEPYAIDSL--RVTEMPPVYPIGPVLDLHGLAQWHPDRASQEKIMRWLDDQP 294
+IVNTF +LE +ID+L ++PP+Y +GP+LDL G D+A + I++WLD+QP
Sbjct: 215 IIVNTFSDLEQSSIDALYDHDEKIPPIYAVGPLLDLKGQPNPKLDQAQHDLILKWLDEQP 274
Query: 295 PSSVVFLCFGSMG-SLSEAQLREIAVGLERTGFRFLWSIREPSKGTIYLPGEYTNLEEIL 353
SVVFLCFGSMG S +Q+REIA+GL+ +G RFLWS K +
Sbjct: 275 DKSVVFLCFGSMGVSFGPSQIREIALGLKHSGVRFLWSNSAEKK--------------VF 320
Query: 354 PEGFFHRTAKIGL----------------AVGGFVSHCGWNSILESLWFGVPMATWPVYA 397
PEGF G A+GGFVSHCGWNSILES+WFGVP+ TWP+YA
Sbjct: 321 PEGFLEWMELEGKGMICGWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYA 380
Query: 398 EQQMNAFQLVKEFGLAVEIRLDYREGSDLVLAEELEKGLQQLMDGDDQVRRKVKQMKEKS 457
EQQ+NAF+LVKE+G+ + +R+DYR+GSD+V AEE+EKGL+ LMD D V +KV++MKE S
Sbjct: 381 EQQLNAFRLVKEWGVGLGLRVDYRKGSDVVAAEEIEKGLKDLMDKDSIVHKKVQEMKEMS 440
Query: 458 RTAMMEDGSSYKSLGSLIEEL 478
R A+++ GSS S+G LI+++
Sbjct: 441 RNAVVDGGSSLISVGKLIDDI 461
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 234 bits (598), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 155/488 (31%), Positives = 248/488 (50%), Gaps = 58/488 (11%)
Query: 7 NLVFTSTPGIGNLVPVVEFARLLTNRDRRFSATVLIITIPERPIVNSYIQTRGTALSVHD 66
++ +PG+G+L+P+VEFA+ L + TV + E P + + S
Sbjct: 8 HVAIIPSPGMGHLIPLVEFAKRLVHL---HGLTVTFVIAGEGPPSKAQRTVLDSLPS--- 61
Query: 67 NDDVNFLHLPTVDPLSPDEYQSSLGYLCTLIEKHKPHVKHAIANLMATESGSDNAVSVRV 126
++ + LP VD + + + P ++ + + E G
Sbjct: 62 --SISSVFLPPVDLTDLSSSTRIESRISLTVTRSNPELRKVFDSFV--EGGR------LP 111
Query: 127 AGLFVDMFCTSMIDVANELGIPSYLYFASPASFLGFLLYFPTLDAQLATEFVDSDTELIV 186
L VD+F T DVA E +P Y+++ + A+ L F L+ P LD ++ EF + L++
Sbjct: 112 TALVVDLFGTDAFDVAVEFHVPPYIFYPTTANVLSFFLHLPKLDETVSCEFRELTEPLML 171
Query: 187 PKDSSITELKIPSFANXXXXXXXXXXXXKRKQDGYMWYLYHGRRYLETKGMIVNTFQELE 246
P + A RK D Y W L++ +RY E +G++VNTF ELE
Sbjct: 172 PGCVPVAGKDFLDPAQ------------DRKDDAYKWLLHNTKRYKEAEGILVNTFFELE 219
Query: 247 PYAIDSLRVT--EMPPVYPIGPVLDLHGLAQWHPDRASQEKIMRWLDDQPPSSVVFLCFG 304
P AI +L+ + PPVYP+GP++++ + + + + ++WLD+QP SV+++ FG
Sbjct: 220 PNAIKALQEPGLDKPPVYPVGPLVNI---GKQEAKQTEESECLKWLDNQPLGSVLYVSFG 276
Query: 305 SMGSLSEAQLREIAVGLERTGFRFLWSIREPS---KGTIYLPGEYTNLEEILPEGFFHRT 361
S G+L+ QL E+A+GL + RFLW IR PS + + T+ LP GF RT
Sbjct: 277 SGGTLTCEQLNELALGLADSEQRFLWVIRSPSGIANSSYFDSHSQTDPLTFLPPGFLERT 336
Query: 362 AKIGLAV---------------GGFVSHCGWNSILESLWFGVPMATWPVYAEQQMNAFQL 406
K G + GGF++HCGWNS LES+ G+P+ WP+YAEQ+MNA L
Sbjct: 337 KKRGFVIPFWAPQAQVLAHPSTGGFLTHCGWNSTLESVVSGIPLIAWPLYAEQKMNAVLL 396
Query: 407 VKEFGLAVEIRLDYREGSD-LVLAEELEKGLQQLMDGDD--QVRRKVKQMKEKSRTAMME 463
++ A L R G D LV EE+ + ++ LM+G++ VR K+K++KE + + +
Sbjct: 397 SEDIRAA----LRPRAGDDGLVRREEVARVVKGLMEGEEGKGVRNKMKELKEAACRVLKD 452
Query: 464 DGSSYKSL 471
DG+S K+L
Sbjct: 453 DGTSTKAL 460
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 140 bits (354), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 134/501 (26%), Positives = 228/501 (45%), Gaps = 54/501 (10%)
Query: 4 RKLNLVFTSTPGIGNLVPVVEFARLLTNRDRRFSATVLIITIPERPIVNSYIQTRGTALS 63
RK ++V P G++ P+ + A+LL R F T + + + +++RG +
Sbjct: 7 RKPHVVMIPYPVQGHINPLFKLAKLL--HLRGFHITFVNTEYNHKRL----LKSRGPK-A 59
Query: 64 VHDNDDVNFLHLPTVDPLSPDEYQSSLGY----LCTLIEKH--KPHVKHAIANLMATESG 117
D NF +P D L+P E + LC + K+ KP+ + L+ +
Sbjct: 60 FDGFTDFNFESIP--DGLTPMEGDGDVSQDVPTLCQSVRKNFLKPYCE-----LLTRLNH 112
Query: 118 SDNAVSVRVAGLFVDMFCTSMIDVANELGIPSYLYFASPASFLGFLLYFPTLDAQLATEF 177
S N V L D + I A E +P+ LYF+S A L +++F + + F
Sbjct: 113 STNVPPVTC--LVSDCCMSFTIQAAEEFELPNVLYFSSSACSLLNVMHFRSFVERGIIPF 170
Query: 178 VDSDTELIVPKDSSITELK-IPSFANXXXXXXXXXXXXKRKQDGYM-WYLYHGRRYLETK 235
D E + T++ IP N D + +++ R +
Sbjct: 171 KD---ESYLTNGCLETKVDWIPGLKNFRLKDIVDFIRTTNPNDIMLEFFIEVADRVNKDT 227
Query: 236 GMIVNTFQELEPYAIDSLRVTEMPPVYPIGPVLDL-------HGLAQWHPDRASQE-KIM 287
+++NTF ELE I++L T +P +YPIGP+ L H L + ++ + +
Sbjct: 228 TILLNTFNELESDVINALSST-IPSIYPIGPLPSLLKQTPQIHQLDSLDSNLWKEDTECL 286
Query: 288 RWLDDQPPSSVVFLCFGSMGSLSEAQLREIAVGLERTGFRFLWSIREP--SKGTIYLPGE 345
WL+ + P SVV++ FGS ++ QL E A GL FLW IR G++ E
Sbjct: 287 DWLESKEPGSVVYVNFGSTTVMTPEQLLEFAWGLANCKKSFLWIIRPDLVIGGSVIFSSE 346
Query: 346 YTNLEEILPEGFFHRTAKIGL-----AVGGFVSHCGWNSILESLWFGVPMATWPVYAEQQ 400
+TN EI G ++GGF++HCGWNS ES+ GVPM WP +A+Q
Sbjct: 347 FTN--EIADRGLIASWCPQDKVLNHPSIGGFLTHCGWNSTTESICAGVPMLCWPFFADQP 404
Query: 401 MNAFQLVKEFGLAVEIRLDYREGSDLVLAEELEKGLQQLMDGD--DQVRRKVKQMKEKSR 458
+ + E+ + +EI + + EEL K + +++ GD ++++K ++K+K+
Sbjct: 405 TDCRFICNEWEIGMEIDTNVKR-------EELAKLINEVIAGDKGKKMKQKAMELKKKAE 457
Query: 459 TAMMEDGSSYKSLGSLIEELM 479
G SY +L +I++++
Sbjct: 458 ENTRPGGCSYMNLNKVIKDVL 478
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 95.9 bits (237), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 70/256 (27%), Positives = 120/256 (46%), Gaps = 44/256 (17%)
Query: 239 VNTFQELEPYAIDSLRVTEMPPVYPIGPVLDLHGLAQWHPDRASQEKIMRWLDDQPPSSV 298
+N+F + P + L ++ + +GP L + + + WLD SSV
Sbjct: 221 INSFATIHPLIENELN-SKFKLLLNVGPF----NLTTPQRKVSDEHGCLEWLDQHENSSV 275
Query: 299 VFLCFGSMGSLSEAQLREIAVGLERTGFRFLWSIREPSKGTIYLPGEYTNLEEILPEGFF 358
V++ FGS+ + +L +A LE GF F+WS R K E LP+GF
Sbjct: 276 VYISFGSVVTPPPHELTALAESLEECGFPFIWSFRGDPK-------------EKLPKGFL 322
Query: 359 HRTAKIGL--------------AVGGFVSHCGWNSILESLWFGVPMATWPVYAEQQMNAF 404
RT G +VG F++H GWNS+LE + GVPM + P + +Q +N
Sbjct: 323 ERTKTKGKIVAWAPQVEILKHSSVGVFLTHSGWNSVLECIVGGVPMISRPFFGDQGLNTI 382
Query: 405 --QLVKEFGLAVEIRLDYREGSDLVLAEELEKGLQQLMDGDDQ--VRRKVKQMKEKSRTA 460
+ V E G+ V+ + ++ E ++K L+ M + +R+K+ ++KE + A
Sbjct: 383 LTESVLEIGVGVD--------NGVLTKESIKKALELTMSSEKGGIMRQKIVKLKESAFKA 434
Query: 461 MMEDGSSYKSLGSLIE 476
+ ++G+S +LI+
Sbjct: 435 VEQNGTSAMDFTTLIQ 450
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 70/269 (26%), Positives = 132/269 (49%), Gaps = 48/269 (17%)
Query: 228 GRRYLETKGMIVNTFQELEPYAIDSLRVTEMPPVYPIGPVLDLHGLAQWHPDRASQEKIM 287
G+ + + +N+F+EL+ + L+ +++ IGP L P + +
Sbjct: 208 GQVLPKATAVFINSFEELDDSLTNDLK-SKLKTYLNIGPF----NLITPPPVVPNTTGCL 262
Query: 288 RWLDDQPPSSVVFLCFGSMGSLSEAQLREIAVGLERTGFRFLWSIREPSKGTIYLPGEYT 347
+WL ++ P+SVV++ FG++ + A++ ++ LE + F+WS+R+ K ++LP
Sbjct: 263 QWLKERKPTSVVYISFGTVTTPPPAEVVALSEALEASRVPFIWSLRD--KARVHLP---- 316
Query: 348 NLEEILPEGFFHRTAKIGL--------------AVGGFVSHCGWNSILESLWFGVPMATW 393
EGF +T G+ AVG FV+HCGWNS+ ES+ GVP+
Sbjct: 317 -------EGFLEKTRGYGMVVPWAPQAEVLAHEAVGAFVTHCGWNSLWESVAGGVPLICR 369
Query: 394 PVYAEQQMNAFQL--VKEFGLAVEIRLDYREG----SDLVLAEELEKGLQQLMDGDDQVR 447
P + +Q++N + V E G+ +E + + G D +L++E K L R
Sbjct: 370 PFFGDQRLNGRMVEDVLEIGVRIEGGVFTKSGLMSCFDQILSQEKGKKL----------R 419
Query: 448 RKVKQMKEKSRTAMMEDGSSYKSLGSLIE 476
++ ++E + A+ GSS ++ +L++
Sbjct: 420 ENLRALRETADRAVGPKGSSTENFITLVD 448
>pdb|2O6L|A Chain A, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
pdb|2O6L|B Chain B, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
Length = 170
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 57/132 (43%), Gaps = 8/132 (6%)
Query: 298 VVFLCFGSMGSLSEAQLREIAVGLERTGFRFLWSIREPSKGTIYLPGEYTNLEEILPEGF 357
VVF + + +E + IA L + + LW T+ G T L + +P+
Sbjct: 24 VVFSLGSXVSNXTEERANVIASALAQIPQKVLWRFDGNKPDTL---GLNTRLYKWIPQND 80
Query: 358 FHRTAKIGLAVGGFVSHCGWNSILESLWFGVPMATWPVYAEQQMNAFQLVKEFGLAVEIR 417
K F++H G N I E+++ G+P P++A+Q N K G AV +
Sbjct: 81 LLGHPK----TRAFITHGGANGIYEAIYHGIPXVGIPLFADQPDN-IAHXKARGAAVRVD 135
Query: 418 LDYREGSDLVLA 429
+ +DL+ A
Sbjct: 136 FNTXSSTDLLNA 147
>pdb|2IYA|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYA|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 424
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 35/67 (52%), Gaps = 7/67 (10%)
Query: 370 GFVSHCGWNSILESLWFGVPMATWPVYAEQQMNAFQLVKEFGLAVEIRLDYREGSDLVLA 429
F++H G S +E+L VPM P AEQ MNA ++V E GL I D V A
Sbjct: 324 AFITHAGMGSTMEALSNAVPMVAVPQIAEQTMNAERIV-ELGLGRHIP------RDQVTA 376
Query: 430 EELEKGL 436
E+L + +
Sbjct: 377 EKLREAV 383
>pdb|2IYF|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYF|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 430
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 51/111 (45%), Gaps = 12/111 (10%)
Query: 371 FVSHCGWNSILESLWFGVPMATWPVYAEQQMNAFQLVKEFGLAVEIRLDYREGSDLVLAE 430
FV+H G E L PM P +Q NA L GL V +L E + A+
Sbjct: 303 FVTHAGAGGSQEGLATATPMIAVPQAVDQFGNADMLQ---GLGVARKLATEEAT----AD 355
Query: 431 ELEKGLQQLMDGDDQVRRKVKQMKEKSRTAMMEDGSSYKSLGSLIEELMAN 481
L + L+D D +V R++++++ + M ++G + ++ + EL A
Sbjct: 356 LLRETALALVD-DPEVARRLRRIQAE----MAQEGGTRRAADLIEAELPAR 401
>pdb|3D0R|A Chain A, Crystal Structure Of Calg3 From Micromonospora
Echinospora Determined In Space Group P2(1)
pdb|3D0R|B Chain B, Crystal Structure Of Calg3 From Micromonospora
Echinospora Determined In Space Group P2(1)
pdb|3OTI|A Chain A, Crystal Structure Of Calg3, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin T0 Bound
Form
pdb|3OTI|B Chain B, Crystal Structure Of Calg3, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin T0 Bound
Form
Length = 398
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 18/23 (78%)
Query: 4 RKLNLVFTSTPGIGNLVPVVEFA 26
R + ++F S+PGIG+L P+++ A
Sbjct: 19 RHMRVLFVSSPGIGHLFPLIQLA 41
>pdb|2OTN|A Chain A, Crystal Structure Of The Catalytically Active Form Of
Diaminopimelate Epimerase From Bacillus Anthracis
pdb|2OTN|B Chain B, Crystal Structure Of The Catalytically Active Form Of
Diaminopimelate Epimerase From Bacillus Anthracis
Length = 308
Score = 28.5 bits (62), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 9/63 (14%)
Query: 224 YLYHGRRYLETKGMIVNTFQELEPYAIDSLRVTEMPPVYPIGPVLDLHGLAQWHPDRASQ 283
+LY+ RY T + N P+A+ + E P+ +GPVL+ H + P+R +
Sbjct: 170 FLYNNHRYAFTAVSMGN------PHAVIFVDDVEQAPLTTLGPVLETH---EMFPERVNV 220
Query: 284 EKI 286
E I
Sbjct: 221 EFI 223
>pdb|3IA7|A Chain A, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
pdb|3IA7|B Chain B, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
Length = 402
Score = 28.5 bits (62), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 30/60 (50%)
Query: 372 VSHCGWNSILESLWFGVPMATWPVYAEQQMNAFQLVKEFGLAVEIRLDYREGSDLVLAEE 431
++H ++LE+ GVP+ P +A + + + V E GL +R D E + + A E
Sbjct: 302 LTHGTTGAVLEAFAAGVPLVLVPHFATEAAPSAERVIELGLGSVLRPDQLEPASIREAVE 361
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,635,191
Number of Sequences: 62578
Number of extensions: 559009
Number of successful extensions: 1319
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1283
Number of HSP's gapped (non-prelim): 16
length of query: 482
length of database: 14,973,337
effective HSP length: 103
effective length of query: 379
effective length of database: 8,527,803
effective search space: 3232037337
effective search space used: 3232037337
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)