BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047946
(321 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1IA5|A Chain A, Polygalacturonase From Aspergillus Aculeatus
pdb|1IB4|A Chain A, Crystal Structure Of Polygalacturonase From Aspergillus
Aculeatus At Ph4.5
pdb|1IB4|B Chain B, Crystal Structure Of Polygalacturonase From Aspergillus
Aculeatus At Ph4.5
Length = 339
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 73/306 (23%), Positives = 121/306 (39%), Gaps = 77/306 (25%)
Query: 61 GTVLVPPGKYLVSFAEFEGPCKASISFQLQGLLDLFSIDTSLSLAKG-TFHGQGETAWPL 119
GT ++ G+ + E+ GP L+ + D +++ A G + +G G W
Sbjct: 46 GTHVIFSGETTFGYKEWSGP-----------LISVSGSDLTITGASGHSINGDGSRWW-- 92
Query: 120 NQCHKNSDCQLPTPIRFNFLNDSTITGIKSVDSRYFHINILGCYNLKLNDLKIT------ 173
+ N P + L +S I+G+K V+S ++ G L L D+ I
Sbjct: 93 DGEGGNGGKTKPKFFAAHSLTNSVISGLKIVNSPVQVFSVAGSDYLTLKDITIDNSDGDD 152
Query: 174 --AH----------------------------ADSSKDILVSEVFCGPGQGISVGSLGKG 203
H +S ++I S +C G G+S+GS+G G
Sbjct: 153 NGGHNTDAFDIGTSTYVTISGATVYNQDDCVAVNSGENIYFSGGYCSGGHGLSIGSVG-G 211
Query: 204 IKDEEVVGLTVRNCTFTCTSNGVRVKTWPDSHIGIASNFTFEDIVMNNVEN-PIVIDQLY 262
D V +T + T + NGVR+KT D+ G S+ T++DI + ++ IV+ Q
Sbjct: 212 RSDNTVKNVTFVDSTIINSDNGVRIKTNIDT-TGSVSDVTYKDITLTSIAKYGIVVQQ-- 268
Query: 263 CPYNKCNIKPKDSMPNIEIGNRN----LVYNGVN-----------------VKVEGPETT 301
Y + P +P + N +V +G N V V G +T+
Sbjct: 269 -NYGDTSSTPTTGVPITDFVLDNVHGSVVSSGTNILISCGSGSCSDWTWTDVSVSGGKTS 327
Query: 302 SLCSNV 307
S C+NV
Sbjct: 328 SKCTNV 333
>pdb|1BHE|A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora
Length = 376
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 6/81 (7%)
Query: 190 GPGQGISVGSLGKGIKDEEVVGLTVRNCTFTCTSNGVRVKTWPDSHIGIASNFTFEDIVM 249
G G G+S+GS G V +TV + T+NG+R+K+ S G+ + + ++VM
Sbjct: 248 GTGHGMSIGSETMG-----VYNVTVDDLKMNGTTNGLRIKS-DKSAAGVVNGVRYSNVVM 301
Query: 250 NNVENPIVIDQLYCPYNKCNI 270
NV PIVID +Y N+
Sbjct: 302 KNVAKPIVIDTVYEKKEGSNV 322
>pdb|2IQ7|A Chain A, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|B Chain B, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|C Chain C, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|D Chain D, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|E Chain E, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|F Chain F, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|G Chain G, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
Length = 339
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 67/234 (28%), Positives = 102/234 (43%), Gaps = 41/234 (17%)
Query: 61 GTVLVPPGKYLVSFAEFEGPCKASISFQLQGL----LDLFSIDTSLSL---AKGTFHGQG 113
GT + GK + E+EGP ISF + SID S +KG+ G+
Sbjct: 42 GTTVTFQGKTTFGYKEWEGPL---ISFSGTNININGASGHSIDCQGSRWWDSKGSNGGKT 98
Query: 114 ETAWPLNQCHKNSDCQ----LPTPIRFNFLNDSTITGIKSV-------DSRYFH------ 156
+ + K+S+ + L TP++ +N +T G+ V DS H
Sbjct: 99 KPKFFYAHSLKSSNIKGLNVLNTPVQAFSINSATTLGVYDVIIDNSAGDSAGGHNTDAFD 158
Query: 157 -INILGCY----NLKLND--LKITAHADSSKDILVSEVFCGPGQGISVGSLGKGIKDEEV 209
+ G Y N+K D L I +S +I + C G G+S+GS+G G D V
Sbjct: 159 VGSSTGVYISGANVKNQDDCLAI----NSGTNITFTGGTCSGGHGLSIGSVG-GRSDNTV 213
Query: 210 VGLTVRNCTFTCTSNGVRVKTWPDSHIGIASNFTFEDIVMNNVEN-PIVIDQLY 262
+T+ N + NGVR+KT + G S T+ I ++N+ IVI+Q Y
Sbjct: 214 KTVTISNSKIVNSDNGVRIKTVSGA-TGSVSGVTYSGITLSNIAKYGIVIEQDY 266
>pdb|1HG8|A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus
Fusarium Moniliforme
Length = 349
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 43/76 (56%), Gaps = 2/76 (2%)
Query: 178 SSKDILVSEVFCGPGQGISVGSLGKGIKDEEVVGLTVRNCTFTCTSNGVRVKTWPDSHIG 237
S +I+VS ++C G G+S+GS+G G D V G+ + + NG R+K+ + G
Sbjct: 195 SGTNIVVSNMYCSGGHGLSIGSVG-GKSDNVVDGVQFLSSQVVNSQNGCRIKSNSGA-TG 252
Query: 238 IASNFTFEDIVMNNVE 253
+N T+++I + N+
Sbjct: 253 TINNVTYQNIALTNIS 268
>pdb|1NHC|A Chain A, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
pdb|1NHC|B Chain B, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
pdb|1NHC|C Chain C, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
pdb|1NHC|D Chain D, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
pdb|1NHC|E Chain E, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
pdb|1NHC|F Chain F, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
Length = 336
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 189 CGPGQGISVGSLGKGIKDEEVVGLTVRNCTFTCTSNGVRVKTWPDSHIGIASNFTFEDIV 248
C G G+S+GS+G G D V +T+ + T + ++NGVR+KT G S T+ +I
Sbjct: 193 CSGGHGLSIGSVG-GRDDNTVKNVTISDSTVSNSANGVRIKTIY-KETGDVSEITYSNIQ 250
Query: 249 MNNVEN-PIVIDQLY 262
++ + + IVI+Q Y
Sbjct: 251 LSGITDYGIVIEQDY 265
>pdb|1CZF|A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger
pdb|1CZF|B Chain B, Endo-Polygalacturonase Ii From Aspergillus Niger
Length = 362
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 48/87 (55%), Gaps = 3/87 (3%)
Query: 177 DSSKDILVSEVFCGPGQGISVGSLGKGIKDEEVVGLTVRNCTFTCTSNGVRVKTWPDSHI 236
+S ++I + C G G+S+GS+G + V +T+ + T + + N VR+KT +
Sbjct: 207 NSGENIWFTGGTCIGGHGLSIGSVGD-RSNNVVKNVTIEHSTVSNSENAVRIKTISGA-T 264
Query: 237 GIASNFTFEDIVMNNVEN-PIVIDQLY 262
G S T+ +IVM+ + + +VI Q Y
Sbjct: 265 GSVSEITYSNIVMSGISDYGVVIQQDY 291
>pdb|3JUR|A Chain A, The Crystal Structure Of A Hyperthermoactive
Exopolygalacturonase From Thermotoga Maritima
pdb|3JUR|B Chain B, The Crystal Structure Of A Hyperthermoactive
Exopolygalacturonase From Thermotoga Maritima
pdb|3JUR|C Chain C, The Crystal Structure Of A Hyperthermoactive
Exopolygalacturonase From Thermotoga Maritima
pdb|3JUR|D Chain D, The Crystal Structure Of A Hyperthermoactive
Exopolygalacturonase From Thermotoga Maritima
Length = 448
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 10/84 (11%)
Query: 12 SFITSVRGIDATNRVLNVKDFGAVADGITDDSKAFDTSWREAWNWDGIKGTVLVPPGKYL 71
+ VR +R +N+ DFGA DG TD S++F + E G G ++VP G +L
Sbjct: 13 EILNHVREPQIPDREVNLLDFGARGDGRTDCSESFKRAIEELSKQGG--GRLIVPEGVFL 70
Query: 72 VSFAEFEGP--CKASISFQLQGLL 93
GP K++I ++G +
Sbjct: 71 T------GPIHLKSNIELHVKGTI 88
>pdb|1RMG|A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus
Length = 422
Score = 35.8 bits (81), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 66/303 (21%), Positives = 114/303 (37%), Gaps = 65/303 (21%)
Query: 6 RFSLLVSFITSVRGIDATNRVLNVKDFGAVADGITDDSKAFDTSWREAWNWDGIKGTVLV 65
+ S V +TS AT + N+ +GAVAD TD A ++W + G V +
Sbjct: 1 QLSGSVGPLTSASTKGAT-KTCNILSYGAVADNSTDVGPAITSAWAACKS----GGLVYI 55
Query: 66 PPGKY-LVSFAEFEGPCKASISFQLQGLL--------------DLFSIDTSLSLAKGTFH 110
P G Y L ++ G +I QL G++ D + S +KG
Sbjct: 56 PSGNYALNTWVTLTGGSATAI--QLDGIIYRTGTASGNMIAVTDTTDFELFSSTSKGAVQ 113
Query: 111 GQGETAWPLNQCHKNSDCQLPTPIRFNFLNDSTITGIKSVDSRYFHINILGC-----YNL 165
G G + +R + ++ I VD+ FH + C YN+
Sbjct: 114 GFG-------YVYHAEGTYGARILRLTDVTHFSVHDIILVDAPAFHFTMDTCSDGEVYNM 166
Query: 166 KL--------------------NDLKITAHAD------SSKDILVSEVFCGPGQGISVGS 199
+ +D+++T + + +ILV ++C G ++GS
Sbjct: 167 AIRGGNEGGLDGIDVWGSNIWVHDVEVTNKDECVTVKSPANNILVESIYCNWSGGCAMGS 226
Query: 200 LGKGIKDEEVVGLTVRNCTFTCTSNGVRVKTWPDSHIGIASNFTFEDIVMNNVENPIVID 259
LG D +V + RN +T +SN + + + G SN E+ + + + ID
Sbjct: 227 LG---ADTDVTDIVYRN-VYTWSSNQMYMIK-SNGGSGTVSNVLLENFIGHGNAYSLDID 281
Query: 260 QLY 262
+
Sbjct: 282 GYW 284
>pdb|2PYG|A Chain A, Azotobacter Vinelandii Mannuronan C-5 Epimerase Alge4
A-Module
pdb|2PYG|B Chain B, Azotobacter Vinelandii Mannuronan C-5 Epimerase Alge4
A-Module
pdb|2PYH|A Chain A, Azotobacter Vinelandii Mannuronan C-5 Epimerase Alge4
A-Module Complexed With Mannuronan Trisaccharide
pdb|2PYH|B Chain B, Azotobacter Vinelandii Mannuronan C-5 Epimerase Alge4
A-Module Complexed With Mannuronan Trisaccharide
Length = 377
Score = 34.7 bits (78), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Query: 28 NVKDFGAVADGITDDSKAFDTSWREAWNWDGIKGTVLVPPGKYLVSFA 75
NVKDFGA+ DG++DD + + A+ GTV +P G+Y VS A
Sbjct: 4 NVKDFGALGDGVSDDRASIQAAIDAAYAA--GGGTVYLPAGEYRVSAA 49
>pdb|1R9J|A Chain A, Transketolase From Leishmania Mexicana
pdb|1R9J|B Chain B, Transketolase From Leishmania Mexicana
Length = 673
Score = 34.7 bits (78), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
Query: 153 RYFHINILGCYNLKLNDLKITAHADSSKDILVSEVFCGPGQGISVGSLGKGIKDEEVVGL 212
+Y +++ G YNL ++DLK D S+ E F PG ++ G LG+GI + VGL
Sbjct: 73 QYALLHMAG-YNLTMDDLK-GFRQDGSRTPGHPERFVTPGVEVTTGPLGQGIAN--AVGL 128
Query: 213 TVRNCTFTCTSN 224
+ T N
Sbjct: 129 AIAEAHLAATFN 140
>pdb|3GQ7|A Chain A, Crystal Structure Of The Bacteriophage Phi29 Gene
Product 12 N- Terminal Fragment
pdb|3GQ8|A Chain A, Crystal Structure Of The Bacteriophage Phi29 Gene
Product 12 N- Terminal Fragment In Complex With
2-(N-Cyclohexylamino)ethane Sulfonic Acid (Ches)
pdb|3GQ9|A Chain A, Crystal Structure Of The Bacteriophage Phi29 Gene
Product 12 N- Terminal Fragment In An Apo Form
pdb|3GQA|A Chain A, Crystal Structure Of The Bacteriophage Phi29 Gene
Product 12 N- Terminal Fragment In Complex With Cobalt
Ions
Length = 609
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 7/47 (14%)
Query: 27 LNVKDFGAVADGITDDSKAFDTSWREAWNWDGIKGTVLVPPGKYLVS 73
++VK +GA DG+TDD +AF+ + + V VP G ++VS
Sbjct: 23 VSVKTYGAKGDGVTDDIRAFEKAIESGF-------PVYVPYGTFMVS 62
>pdb|3SUC|A Chain A, Crystal Structure Of The Pre-Mature Bacteriophage Phi29
Gene Product 12
Length = 772
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 7/47 (14%)
Query: 27 LNVKDFGAVADGITDDSKAFDTSWREAWNWDGIKGTVLVPPGKYLVS 73
++VK +GA DG+TDD +AF+ + + V VP G ++VS
Sbjct: 23 VSVKTYGAKGDGVTDDIRAFEKAIESGF-------PVYVPYGTFMVS 62
>pdb|1EWK|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Complexed With Glutamate
pdb|1EWK|B Chain B, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Complexed With Glutamate
pdb|1EWT|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Ligand Free Form I
pdb|1EWT|B Chain B, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Ligand Free Form I
pdb|1EWV|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Ligand Free Form Ii
pdb|1EWV|B Chain B, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Ligand Free Form Ii
pdb|1ISR|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Complexed With Glutamate And Gadolinium Ion
pdb|1ISS|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Complexed With An Antagonist
pdb|1ISS|B Chain B, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Complexed With An Antagonist
Length = 490
Score = 31.2 bits (69), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 6/52 (11%)
Query: 65 VPPGKYLVSFAEFEGPCKASISFQLQGLLDLFSI------DTSLSLAKGTFH 110
+PPG+ A GP +S++ Q+Q LL LF I TS+ L+ T +
Sbjct: 115 LPPGRTKKPIAGVIGPGSSSVAIQVQNLLQLFDIPQIAYSATSIDLSDKTLY 166
>pdb|3KS9|A Chain A, Metabotropic Glutamate Receptor Mglur1 Complexed With
Ly341495 Antagonist
pdb|3KS9|B Chain B, Metabotropic Glutamate Receptor Mglur1 Complexed With
Ly341495 Antagonist
Length = 496
Score = 31.2 bits (69), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 6/52 (11%)
Query: 65 VPPGKYLVSFAEFEGPCKASISFQLQGLLDLFSI------DTSLSLAKGTFH 110
+PPG+ A GP +S++ Q+Q LL LF I TS+ L+ T +
Sbjct: 120 LPPGRTKKPIAGVIGPGSSSVAIQVQNLLQLFDIPQIAYSATSIDLSDKTLY 171
>pdb|1E1D|A Chain A, Hybrid Cluster Protein From Desulfovibrio Vulgaris
Length = 553
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 27/49 (55%)
Query: 139 LNDSTITGIKSVDSRYFHINILGCYNLKLNDLKITAHADSSKDILVSEV 187
L + I G+K V + H +LG ++++ + A A ++KD+ V E+
Sbjct: 147 LRELLIIGLKGVAAYAEHAAVLGFRKTEIDEFMLEALASTTKDLSVDEM 195
>pdb|1GNT|A Chain A, Hybrid Cluster Protein From Desulfovibrio Vulgaris. X-Ray
Structure At 1.25a Resolution Using Synchrotron
Radiation.
pdb|1OA1|A Chain A, Reduced Hybrid Cluster Protein (Hcp) From Desulfovibrio
Vulgaris Hildenborough Structure At 1.55a Resolution
Using Synchrotron Radiation
Length = 553
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 27/49 (55%)
Query: 139 LNDSTITGIKSVDSRYFHINILGCYNLKLNDLKITAHADSSKDILVSEV 187
L + I G+K V + H +LG ++++ + A A ++KD+ V E+
Sbjct: 147 LRELLIIGLKGVAAYAEHAAVLGFRKTEIDEFMLEALASTTKDLSVDEM 195
>pdb|1E2U|A Chain A, Low Temperature Stucture Of Hybrid Cluster Protein From
Desulfovibrio Vulgaris To 1.6a
pdb|1E9V|A Chain A, Xenon Bound In Hydrophobic Channel Of Hybrid Cluster
Protein From Desulfovibrio Vulgaris
pdb|1W9M|A Chain A, As-Isolated Hybrid Cluster Protein From Desulfovibrio
Vulgaris X-Ray Structure At 1.35a Resolution Using Iron
Anomalous Signal
Length = 553
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 27/49 (55%)
Query: 139 LNDSTITGIKSVDSRYFHINILGCYNLKLNDLKITAHADSSKDILVSEV 187
L + I G+K V + H +LG ++++ + A A ++KD+ V E+
Sbjct: 147 LRELLIIGLKGVAAYAEHAAVLGFRKTEIDEFMLEALASTTKDLSVDEM 195
>pdb|1K5C|A Chain A, Endopolygalacturonase I From Stereum Purpureum At 0.96 A
Resolution
pdb|1KCC|A Chain A, Endopolygalacturonase I From Stereum Purpureum Complexed
With A Galacturonate At 1.00 A Resolution.
pdb|1KCD|A Chain A, Endopolygalacturonase I From Stereum Purpureum Complexed
With Two Galacturonate At 1.15 A Resolution
Length = 335
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
Query: 189 CGPGQGISVGSLGKGIKDEEVVGLTVRNCTFTCTSNGVRVKTWPDSHIGIASNFTFEDIV 248
C G GIS+GS+ G + V + ++ T T + GVR+K + S T++
Sbjct: 191 CSGGHGISIGSIATG---KHVSNVVIKGNTVTRSMYGVRIKAQRTATSASVSGVTYDANT 247
Query: 249 MNNVEN-PIVIDQLY 262
++ + ++I Q Y
Sbjct: 248 ISGIAKYGVLISQSY 262
>pdb|3EQN|A Chain A, Crystal Structure Of Beta-1,3-Glucanase From Phanerochaete
Chrysosporium (Lam55a)
pdb|3EQN|B Chain B, Crystal Structure Of Beta-1,3-Glucanase From Phanerochaete
Chrysosporium (Lam55a)
pdb|3EQO|A Chain A, Crystal Structure Of Beta-1,3-Glucanase From Phanerochaete
Chrysosporium (Lam55a) Gluconolactone Complex
pdb|3EQO|B Chain B, Crystal Structure Of Beta-1,3-Glucanase From Phanerochaete
Chrysosporium (Lam55a) Gluconolactone Complex
Length = 758
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 26/57 (45%), Gaps = 15/57 (26%)
Query: 28 NVKDFGAVADGITDDSKAFDTSWREAWNWDGIKGT-----------VLVPPGKYLVS 73
NVK++GA DG TDD+ A + A N G G V PPG Y VS
Sbjct: 51 NVKNYGAKGDGNTDDTAAI----QAAINAGGRCGQGCDSTTTQPALVYFPPGTYKVS 103
>pdb|2UVE|A Chain A, Structure Of Yersinia Enterocolitica Family 28
Exopolygalacturonase
pdb|2UVE|B Chain B, Structure Of Yersinia Enterocolitica Family 28
Exopolygalacturonase
pdb|2UVF|A Chain A, Structure Of Yersinia Enterocolitica Family 28
Exopolygalacturonase In Complex With Digalaturonic Acid
pdb|2UVF|B Chain B, Structure Of Yersinia Enterocolitica Family 28
Exopolygalacturonase In Complex With Digalaturonic Acid
Length = 608
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 20/28 (71%)
Query: 22 ATNRVLNVKDFGAVADGITDDSKAFDTS 49
A +++NV+DFGA+ DG T ++KA +
Sbjct: 152 AKPQIVNVRDFGAIDDGKTLNTKAIQQA 179
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,877,728
Number of Sequences: 62578
Number of extensions: 422782
Number of successful extensions: 914
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 891
Number of HSP's gapped (non-prelim): 26
length of query: 321
length of database: 14,973,337
effective HSP length: 99
effective length of query: 222
effective length of database: 8,778,115
effective search space: 1948741530
effective search space used: 1948741530
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)