Query 047946
Match_columns 321
No_of_seqs 234 out of 1998
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 04:50:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047946.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047946hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02155 polygalacturonase 100.0 6.8E-70 1.5E-74 518.3 36.2 309 4-321 5-392 (394)
2 PLN02793 Probable polygalactur 100.0 4.1E-67 8.9E-72 506.5 37.5 289 24-321 50-423 (443)
3 PLN03003 Probable polygalactur 100.0 6E-67 1.3E-71 502.2 32.4 296 13-321 10-389 (456)
4 PLN02188 polygalacturonase/gly 100.0 2.9E-66 6.2E-71 495.4 33.6 290 24-321 34-404 (404)
5 PLN02218 polygalacturonase ADP 100.0 1.2E-65 2.6E-70 494.2 35.5 297 19-320 60-430 (431)
6 PLN03010 polygalacturonase 100.0 7.8E-65 1.7E-69 484.6 36.7 282 19-321 39-403 (409)
7 PF00295 Glyco_hydro_28: Glyco 100.0 2.7E-45 5.8E-50 344.8 24.2 235 54-290 1-284 (326)
8 COG5434 PGU1 Endopygalactoruna 100.0 1.5E-35 3.3E-40 288.8 23.3 226 23-259 79-405 (542)
9 TIGR03808 RR_plus_rpt_1 twin-a 99.9 2E-22 4.3E-27 191.4 19.9 208 22-256 33-288 (455)
10 PF12708 Pectate_lyase_3: Pect 99.9 2.1E-20 4.6E-25 165.8 21.1 193 26-256 1-224 (225)
11 PF03718 Glyco_hydro_49: Glyco 99.4 4.8E-12 1E-16 122.1 18.2 213 60-289 232-489 (582)
12 TIGR03805 beta_helix_1 paralle 99.4 1.2E-11 2.7E-16 115.8 17.3 142 46-229 1-158 (314)
13 PLN02793 Probable polygalactur 99.2 1E-09 2.2E-14 107.0 20.8 125 133-259 202-377 (443)
14 PLN03010 polygalacturonase 99.2 9.3E-10 2E-14 106.1 17.1 122 132-262 131-291 (409)
15 PLN02188 polygalacturonase/gly 99.1 2E-08 4.3E-13 97.0 22.2 124 134-258 208-356 (404)
16 PLN03003 Probable polygalactur 99.1 3.7E-09 8E-14 102.8 16.6 130 131-261 104-271 (456)
17 PLN02155 polygalacturonase 99.1 1.7E-08 3.7E-13 97.1 20.9 127 133-261 108-278 (394)
18 PLN02218 polygalacturonase ADP 99.1 2.7E-09 5.8E-14 103.7 15.5 149 132-290 148-346 (431)
19 PF00295 Glyco_hydro_28: Glyco 99.0 1.4E-08 3E-13 95.9 15.8 158 133-311 117-324 (326)
20 COG5434 PGU1 Endopygalactoruna 98.4 2.6E-06 5.6E-11 84.5 11.8 126 153-289 237-398 (542)
21 TIGR03805 beta_helix_1 paralle 98.3 3.6E-05 7.9E-10 72.3 17.5 156 133-291 79-285 (314)
22 PRK10123 wcaM putative colanic 98.2 3.4E-05 7.4E-10 69.9 14.0 199 23-248 31-281 (464)
23 PF12541 DUF3737: Protein of u 98.2 1.1E-05 2.4E-10 72.2 9.2 37 130-173 90-128 (277)
24 PF12541 DUF3737: Protein of u 98.1 2.4E-05 5.3E-10 70.1 9.4 111 138-253 77-207 (277)
25 COG3866 PelB Pectate lyase [Ca 98.0 0.00019 4.1E-09 65.5 14.1 89 134-222 119-229 (345)
26 PF07602 DUF1565: Protein of u 98.0 0.00046 1E-08 62.3 15.5 173 41-260 13-196 (246)
27 PLN02682 pectinesterase family 97.9 0.0022 4.7E-08 61.2 20.5 132 40-191 79-228 (369)
28 PF03718 Glyco_hydro_49: Glyco 97.9 0.0016 3.5E-08 64.0 19.6 190 60-258 256-496 (582)
29 smart00656 Amb_all Amb_all dom 97.9 0.00035 7.7E-09 60.9 13.2 88 134-222 34-144 (190)
30 PF13229 Beta_helix: Right han 97.9 9.1E-05 2E-09 61.2 9.0 128 134-290 3-138 (158)
31 PF00544 Pec_lyase_C: Pectate 97.8 9.8E-05 2.1E-09 64.9 8.8 85 137-222 43-158 (200)
32 PLN02773 pectinesterase 97.7 0.0076 1.6E-07 56.5 19.8 141 42-198 16-169 (317)
33 PLN02480 Probable pectinestera 97.6 0.0036 7.8E-08 59.3 15.9 126 40-191 57-197 (343)
34 PLN02170 probable pectinestera 97.6 0.011 2.3E-07 59.0 19.6 129 41-191 235-373 (529)
35 PLN02665 pectinesterase family 97.5 0.017 3.6E-07 55.3 19.5 127 41-190 78-218 (366)
36 TIGR03808 RR_plus_rpt_1 twin-a 97.5 0.0033 7.2E-08 61.0 14.8 120 133-260 108-269 (455)
37 PF13229 Beta_helix: Right han 97.4 0.0019 4.2E-08 53.1 10.9 111 133-258 25-144 (158)
38 PLN02708 Probable pectinestera 97.4 0.016 3.4E-07 58.5 18.8 148 41-220 251-409 (553)
39 PLN02497 probable pectinestera 97.4 0.051 1.1E-06 51.3 20.7 125 41-191 42-182 (331)
40 PLN02304 probable pectinestera 97.3 0.027 5.8E-07 54.0 18.0 136 41-198 85-234 (379)
41 PLN02933 Probable pectinestera 97.2 0.032 7E-07 55.8 18.7 127 41-191 228-365 (530)
42 PLN02713 Probable pectinestera 97.2 0.028 6.1E-07 56.9 18.0 126 41-191 260-400 (566)
43 PLN02484 probable pectinestera 97.2 0.041 8.8E-07 55.9 19.1 128 41-191 282-420 (587)
44 PLN02671 pectinesterase 97.2 0.039 8.4E-07 52.6 17.7 133 41-191 69-218 (359)
45 PLN02634 probable pectinestera 97.2 0.053 1.1E-06 51.7 18.3 131 41-191 66-214 (359)
46 PF01095 Pectinesterase: Pecti 97.1 0.0034 7.5E-08 58.5 10.3 128 41-191 10-147 (298)
47 PLN02201 probable pectinestera 97.1 0.05 1.1E-06 54.4 18.9 126 41-191 216-353 (520)
48 PLN02916 pectinesterase family 97.1 0.036 7.9E-07 55.0 17.6 126 41-191 197-337 (502)
49 PLN02176 putative pectinestera 97.1 0.053 1.2E-06 51.3 18.0 125 41-191 49-188 (340)
50 PF14592 Chondroitinas_B: Chon 97.1 0.031 6.7E-07 54.2 16.6 186 42-248 3-236 (425)
51 PF05048 NosD: Periplasmic cop 97.1 0.012 2.6E-07 52.7 13.2 106 134-257 38-150 (236)
52 PLN02301 pectinesterase/pectin 97.1 0.048 1E-06 54.9 18.4 127 41-191 246-383 (548)
53 PLN03043 Probable pectinestera 97.1 0.044 9.5E-07 55.2 17.8 126 41-191 233-373 (538)
54 PLN02506 putative pectinestera 97.0 0.047 1E-06 54.9 17.7 147 41-221 242-399 (537)
55 PLN02488 probable pectinestera 97.0 0.093 2E-06 52.1 19.3 127 41-191 207-344 (509)
56 PLN02432 putative pectinestera 97.0 0.086 1.9E-06 49.0 17.9 130 42-198 22-160 (293)
57 PLN02416 probable pectinestera 97.0 0.061 1.3E-06 54.1 18.0 127 41-191 240-377 (541)
58 PLN02217 probable pectinestera 97.0 0.072 1.6E-06 54.7 18.6 113 41-178 260-380 (670)
59 PLN02995 Probable pectinestera 97.0 0.067 1.5E-06 53.8 17.9 127 41-191 233-372 (539)
60 PLN02745 Putative pectinestera 96.9 0.11 2.3E-06 53.0 19.2 128 41-191 295-432 (596)
61 PF05048 NosD: Periplasmic cop 96.9 0.019 4E-07 51.5 12.4 110 133-260 15-130 (236)
62 PLN02313 Pectinesterase/pectin 96.9 0.08 1.7E-06 53.9 18.1 127 41-191 285-422 (587)
63 PLN02990 Probable pectinestera 96.9 0.11 2.4E-06 52.7 18.9 127 41-191 269-407 (572)
64 COG3866 PelB Pectate lyase [Ca 96.8 0.015 3.2E-07 53.5 10.9 113 133-253 94-230 (345)
65 PLN02468 putative pectinestera 96.7 0.078 1.7E-06 53.7 16.4 125 42-191 269-405 (565)
66 PRK10531 acyl-CoA thioesterase 96.5 0.23 5.1E-06 48.2 17.7 172 36-221 88-302 (422)
67 PLN02197 pectinesterase 96.5 0.093 2E-06 53.3 15.4 126 41-190 285-423 (588)
68 PLN02314 pectinesterase 96.4 0.13 2.8E-06 52.4 15.8 125 42-191 289-425 (586)
69 PF12218 End_N_terminal: N ter 96.3 0.0047 1E-07 42.9 3.4 37 34-75 1-38 (67)
70 smart00656 Amb_all Amb_all dom 96.3 0.032 7E-07 48.6 9.3 98 155-252 32-144 (190)
71 PF01696 Adeno_E1B_55K: Adenov 96.0 0.57 1.2E-05 44.9 16.7 149 61-248 65-221 (386)
72 COG4677 PemB Pectin methyleste 95.4 0.35 7.7E-06 45.1 12.5 150 41-199 92-273 (405)
73 PF12708 Pectate_lyase_3: Pect 94.9 1.2 2.6E-05 38.8 14.4 113 144-290 96-221 (225)
74 PF00544 Pec_lyase_C: Pectate 94.7 0.13 2.7E-06 45.2 7.3 90 155-252 37-158 (200)
75 COG3420 NosD Nitrous oxidase a 94.0 5.6 0.00012 37.6 17.4 43 132-174 121-170 (408)
76 PF07602 DUF1565: Protein of u 91.3 2.1 4.5E-05 38.8 9.9 78 158-259 92-170 (246)
77 PF01696 Adeno_E1B_55K: Adenov 82.3 26 0.00056 33.9 12.0 79 159-249 117-202 (386)
78 COG3420 NosD Nitrous oxidase a 80.4 18 0.00039 34.3 9.9 116 96-231 72-203 (408)
79 PLN02698 Probable pectinestera 77.5 32 0.00069 34.6 11.5 56 136-191 266-330 (497)
80 PF08480 Disaggr_assoc: Disagg 74.7 33 0.00071 29.7 9.1 23 140-162 2-24 (198)
81 PF03211 Pectate_lyase: Pectat 71.8 72 0.0016 28.3 14.3 117 133-264 56-183 (215)
82 PRK10123 wcaM putative colanic 68.9 24 0.00051 32.8 7.5 103 140-250 246-372 (464)
83 smart00710 PbH1 Parallel beta- 63.6 8.1 0.00017 20.7 2.3 21 210-230 2-23 (26)
84 TIGR03804 para_beta_helix para 63.1 24 0.00051 22.4 4.8 40 134-174 2-41 (44)
85 PF08480 Disaggr_assoc: Disagg 49.8 58 0.0013 28.2 6.2 68 179-252 33-109 (198)
86 PF09251 PhageP22-tail: Salmon 48.6 70 0.0015 31.4 7.2 57 179-251 310-366 (549)
87 PF09251 PhageP22-tail: Salmon 47.8 1.9E+02 0.0042 28.4 9.9 68 179-249 263-347 (549)
88 TIGR02837 spore_II_R stage II 46.1 15 0.00032 31.2 2.0 9 110-118 142-150 (168)
89 PF09551 Spore_II_R: Stage II 44.2 17 0.00037 29.6 2.1 9 110-118 107-115 (130)
90 PF10162 G8: G8 domain; Inter 38.6 63 0.0014 25.8 4.6 32 60-95 12-43 (125)
91 PF05342 Peptidase_M26_N: M26 38.2 18 0.00038 32.9 1.4 9 66-74 154-162 (250)
92 PF14262 DUF4353: Domain of un 35.4 1.5E+02 0.0033 27.1 7.1 36 60-95 6-49 (264)
93 PF14592 Chondroitinas_B: Chon 29.5 4.8E+02 0.01 25.7 9.7 43 213-259 248-295 (425)
94 PF04519 Bactofilin: Polymer-f 27.9 2E+02 0.0044 21.6 5.7 45 62-112 2-48 (101)
95 PHA00672 hypothetical protein 27.7 93 0.002 25.2 3.7 16 61-76 50-65 (152)
96 PF11429 Colicin_D: Colicin D; 26.9 76 0.0016 24.2 3.0 38 30-72 10-48 (92)
97 PF13670 PepSY_2: Peptidase pr 23.8 2.9E+02 0.0063 20.0 7.8 43 42-90 30-73 (83)
98 PF03211 Pectate_lyase: Pectat 21.6 5.8E+02 0.012 22.7 11.3 155 61-246 20-194 (215)
No 1
>PLN02155 polygalacturonase
Probab=100.00 E-value=6.8e-70 Score=518.30 Aligned_cols=309 Identities=36% Similarity=0.689 Sum_probs=271.7
Q ss_pred hhhhhHHHHHHHHhhhcccCCceEEeeecCccCCCCcchHHHHHHHHHHHhhcCCCccEEEecCceEEEeeeeeecccCC
Q 047946 4 AARFSLLVSFITSVRGIDATNRVLNVKDFGAVADGITDDSKAFDTSWREAWNWDGIKGTVLVPPGKYLVSFAEFEGPCKA 83 (321)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~v~dfGA~~dg~tddt~Aiq~Ai~~ac~~~g~g~~v~vP~G~y~~~~l~l~g~~~s 83 (321)
|.+|-+++.||.++++.+..+++|||+||||+|||++|||+|||+||++||++.| |++|+||+|+|+++++.|+|||||
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~nv~~yGA~gDG~td~t~Ai~~Ai~~aC~~~g-Gg~v~vP~G~yl~g~i~l~gpcks 83 (394)
T PLN02155 5 AITFPLLFTLLTFIDVSSSASNVFNVVSFGAKPDGVTDSTAAFLKAWQGACGSAS-SATVVVPTGTFLLKVITFGGPCKS 83 (394)
T ss_pred eeehhHHHHHHHHhhccccCCcEEEhhhcCcCCCCccccHHHHHHHHHHHcccCC-CeEEEECCCcEEEEEEEEcccCCC
Confidence 3456666667778888999999999999999999999999999999987899888 899999999999999999999999
Q ss_pred ceEEEEcCeEEE-------------EEEcC--CeEEeccEEEeccccccCCccCCCCCCCC-CCeeEEEEeecceEEece
Q 047946 84 SISFQLQGLLDL-------------FSIDT--SLSLAKGTFHGQGETAWPLNQCHKNSDCQ-LPTPIRFNFLNDSTITGI 147 (321)
Q Consensus 84 ~v~l~i~G~l~~-------------i~~~~--ni~I~GG~idG~G~~~w~~~~~~~~~~~~-rp~~i~~~~~~nv~I~~i 147 (321)
+++|+|+|+|++ +.|.+ ++.|+||+|||||+.||... +...+++ +|+++.|.+|+|++|+++
T Consensus 84 nv~l~l~G~l~~~~d~~~~~~~~~wi~~~~~~~i~i~GG~iDGqG~~ww~~~--~~~~~~~~~p~~i~~~~~~nv~i~gi 161 (394)
T PLN02155 84 KITFQVAGTVVAPEDYRTFGNSGYWILFNKVNRFSLVGGTFDARANGFWSCR--KSGQNCPPGVRSISFNSAKDVIISGV 161 (394)
T ss_pred CceEEEeeEEECccccccccccceeEEEECcCCCEEEccEEecCceeEEEcc--cCCCCCCCcccceeEEEeeeEEEECe
Confidence 999999998864 56666 89999999999999999753 2222333 789999999999999999
Q ss_pred eEeCCCCeEEEEEceeeEEEEeeEEecCCCC---------------------------------cccEEEEeEEEcCCCe
Q 047946 148 KSVDSRYFHINILGCYNLKLNDLKITAHADS---------------------------------SKDILVSEVFCGPGQG 194 (321)
Q Consensus 148 ti~ns~~~~i~~~~s~nv~i~nv~I~~~~~~---------------------------------s~nI~I~n~~~~~~~G 194 (321)
+++|||+|++++..|+|+++++++|.++.++ ++||+|+|++|.++||
T Consensus 162 tl~nSp~w~i~~~~~~nv~i~~v~I~~p~~~~NtDGidi~~s~nV~I~~~~I~~gDDcIaik~gs~nI~I~n~~c~~GhG 241 (394)
T PLN02155 162 KSMNSQVSHMTLNGCTNVVVRNVKLVAPGNSPNTDGFHVQFSTGVTFTGSTVQTGDDCVAIGPGTRNFLITKLACGPGHG 241 (394)
T ss_pred EEEcCCCeEEEEECeeeEEEEEEEEECCCCCCCCCccccccceeEEEEeeEEecCCceEEcCCCCceEEEEEEEEECCce
Confidence 9999999999999999999999999987642 7899999999999999
Q ss_pred eEEeecCCCCCCCcEEEEEEEeeEEEeccceEEEEeeCCCCceeeeCcEEeeeEEecCCccEEEEeeecCCC-CCCCCCC
Q 047946 195 ISVGSLGKGIKDEEVVGLTVRNCTFTCTSNGVRVKTWPDSHIGIASNFTFEDIVMNNVENPIVIDQLYCPYN-KCNIKPK 273 (321)
Q Consensus 195 I~iGS~G~~~~~~~v~nI~v~n~~i~~~~~gi~ikt~~g~~~g~v~nIt~~ni~~~~v~~~i~i~~~y~~~~-~~~~~ps 273 (321)
|+|||+|++.+.+.|+||+|+||+|.++.+|+|||||.++++|+|+||+|+||+|+++++||+|+|+|++.. .|+..++
T Consensus 242 isIGS~g~~~~~~~V~nV~v~n~~~~~t~~GirIKT~~~~~gG~v~nI~f~ni~m~~v~~pI~i~q~Y~~~~~~~~~~~s 321 (394)
T PLN02155 242 VSIGSLAKELNEDGVENVTVSSSVFTGSQNGVRIKSWARPSTGFVRNVFFQDLVMKNVENPIIIDQNYCPTHEGCPNEYS 321 (394)
T ss_pred EEeccccccCCCCcEEEEEEEeeEEeCCCcEEEEEEecCCCCEEEEEEEEEeEEEcCccccEEEEecccCCCCCCcCCCC
Confidence 999999988767899999999999999999999999976557999999999999999999999999998643 2431110
Q ss_pred ---------------------------CC-C-CCEEEEeeEEEecCcccccCCCCCcceeeeeeecccccccCCCCC
Q 047946 274 ---------------------------DS-M-PNIEIGNRNLVYNGVNVKVEGPETTSLCSNVKPTLFGKQIPATCV 321 (321)
Q Consensus 274 ---------------------------~~-~-~ni~~~nI~i~~~~~~~~~~~~~~~~~C~n~~g~~~~~~~p~~c~ 321 (321)
+. . +||+|+||+++.+++. + ..++|+||+|.+.|.++|++|+
T Consensus 322 ~v~i~~It~~ni~gt~~~~~a~~l~c~~~~pc~~I~l~nv~i~~~~~~-----~-~~~~C~n~~G~~~~~~~p~~c~ 392 (394)
T PLN02155 322 GVKISQVTYKNIQGTSATQEAMKLVCSKSSPCTGITLQDIKLTYNKGT-----P-ATSFCFNAVGKSLGVIQPTSCL 392 (394)
T ss_pred CeEEEEEEEEeeEEEecCCceEEEEeCCCCCEEEEEEEeeEEEecCCC-----c-cCcEEeccEeEEcccCCccccc
Confidence 23 3 8999999999998754 5 6899999999999988999996
No 2
>PLN02793 Probable polygalacturonase
Probab=100.00 E-value=4.1e-67 Score=506.49 Aligned_cols=289 Identities=37% Similarity=0.671 Sum_probs=255.9
Q ss_pred CceEEeeecCccCCCCcchHHHHHHHHHHHhhcCCCccEEEecCc-eEEEeeeeeecccCCceEEEEcCeEEE-------
Q 047946 24 NRVLNVKDFGAVADGITDDSKAFDTSWREAWNWDGIKGTVLVPPG-KYLVSFAEFEGPCKASISFQLQGLLDL------- 95 (321)
Q Consensus 24 ~~~~~v~dfGA~~dg~tddt~Aiq~Ai~~ac~~~g~g~~v~vP~G-~y~~~~l~l~g~~~s~v~l~i~G~l~~------- 95 (321)
+++|||+||||+|||.+|||+|||+||++||+..+ +++|+||+| +|+++++.|.|||||+++|+++|+|++
T Consensus 50 ~~~~~V~dfGA~gDG~tddT~Aiq~Ai~~aC~~~g-gg~v~vP~G~~fl~~~i~l~gpcks~vtL~l~g~l~~~~d~~~w 128 (443)
T PLN02793 50 ERVLHVGDFGAKGDGVTDDTQAFKEAWKMACSSKV-KTRIVIPAGYTFLVRPIDLGGPCKAKLTLQISGTIIAPKDPDVW 128 (443)
T ss_pred ceEEEhhhcccCCCCCCccHHHHHHHHHHHhccCC-CCEEEECCCceEEEEEEEECCccCCCeEEEEEEEEEccCChHHc
Confidence 45899999999999999999999999987898877 899999999 599999999999999999999999886
Q ss_pred --------EEEcC--CeEEec-cEEEeccccccCCccCCCC--CCC-CCCeeEEEEeecceEEeceeEeCCCCeEEEEEc
Q 047946 96 --------FSIDT--SLSLAK-GTFHGQGETAWPLNQCHKN--SDC-QLPTPIRFNFLNDSTITGIKSVDSRYFHINILG 161 (321)
Q Consensus 96 --------i~~~~--ni~I~G-G~idG~G~~~w~~~~~~~~--~~~-~rp~~i~~~~~~nv~I~~iti~ns~~~~i~~~~ 161 (321)
+.|.+ |++|+| |+|||+|+.||+.. ++.. .++ .||+++.|.+|+|++|++++++|||+|++++..
T Consensus 129 ~~~~~~~~i~~~~~~ni~ItG~G~IDG~G~~ww~~~-~~~~~~~~~~~rP~~i~f~~~~nv~v~gitl~nSp~~~i~~~~ 207 (443)
T PLN02793 129 KGLNPRKWLYFHGVNHLTVEGGGTVNGMGHEWWAQS-CKINHTNPCRHAPTAITFHKCKDLRVENLNVIDSQQMHIAFTN 207 (443)
T ss_pred cCCCCceEEEEecCceEEEEeceEEECCCccccccc-ccccCCCCccCCceEEEEEeeccEEEECeEEEcCCCeEEEEEc
Confidence 55656 999999 99999999999752 2211 122 289999999999999999999999999999999
Q ss_pred eeeEEEEeeEEecCCCC---------------------------------cccEEEEeEEEcCCCeeEEeecCCCCCCCc
Q 047946 162 CYNLKLNDLKITAHADS---------------------------------SKDILVSEVFCGPGQGISVGSLGKGIKDEE 208 (321)
Q Consensus 162 s~nv~i~nv~I~~~~~~---------------------------------s~nI~I~n~~~~~~~GI~iGS~G~~~~~~~ 208 (321)
|+||+|++++|.++.++ ++||+|+||+|.++|||+|||+|++.+...
T Consensus 208 ~~nv~i~~l~I~~p~~spNTDGIdi~~s~nV~I~n~~I~~gDDcIaik~~s~nI~I~n~~c~~GhGisIGSlg~~~~~~~ 287 (443)
T PLN02793 208 CRRVTISGLKVIAPATSPNTDGIHISASRGVVIKDSIVRTGDDCISIVGNSSRIKIRNIACGPGHGISIGSLGKSNSWSE 287 (443)
T ss_pred cCcEEEEEEEEECCCCCCCCCcEeeeccceEEEEeCEEeCCCCeEEecCCcCCEEEEEeEEeCCccEEEecccCcCCCCc
Confidence 99999999999987532 899999999999999999999999887789
Q ss_pred EEEEEEEeeEEEeccceEEEEeeCCCCceeeeCcEEeeeEEecCCccEEEEeeecCCC-CCCCCCC--------------
Q 047946 209 VVGLTVRNCTFTCTSNGVRVKTWPDSHIGIASNFTFEDIVMNNVENPIVIDQLYCPYN-KCNIKPK-------------- 273 (321)
Q Consensus 209 v~nI~v~n~~i~~~~~gi~ikt~~g~~~g~v~nIt~~ni~~~~v~~~i~i~~~y~~~~-~~~~~ps-------------- 273 (321)
|+||+|+||+|.++.+|+|||||+|+ +|.|+||+|+||+|+++.+||+|+|+|++.. .|...++
T Consensus 288 V~nV~v~n~~~~~t~~GirIKt~~g~-~G~v~nItf~ni~m~nv~~pI~I~q~Y~~~~~~~~~~ts~v~I~nI~~~nI~G 366 (443)
T PLN02793 288 VRDITVDGAFLSNTDNGVRIKTWQGG-SGNASKITFQNIFMENVSNPIIIDQYYCDSRKPCANQTSAVKVENISFVHIKG 366 (443)
T ss_pred EEEEEEEccEEeCCCceEEEEEeCCC-CEEEEEEEEEeEEEecCCceEEEEeeecCCCCCCCCCCCCeEEEeEEEEEEEE
Confidence 99999999999999999999999976 6999999999999999999999999998632 3432211
Q ss_pred -------------CC-C-CCEEEEeeEEEecCcccccCCCCCcceeeeeeecccccccCCCCC
Q 047946 274 -------------DS-M-PNIEIGNRNLVYNGVNVKVEGPETTSLCSNVKPTLFGKQIPATCV 321 (321)
Q Consensus 274 -------------~~-~-~ni~~~nI~i~~~~~~~~~~~~~~~~~C~n~~g~~~~~~~p~~c~ 321 (321)
++ . +||+|+||+|+..+++ + ..+.|+|++|...|.+.|+||+
T Consensus 367 t~~~~~ai~l~cs~~~pc~ni~l~nI~l~~~~g~-----~-~~~~C~n~~g~~~~~~~p~~C~ 423 (443)
T PLN02793 367 TSATEEAIKFACSDSSPCEGLYLEDVQLLSSTGD-----F-TESFCWEAYGSSSGQVYPPPCF 423 (443)
T ss_pred EEcccccEEEEeCCCCCEeeEEEEeeEEEecCCC-----C-CCcEEEccEEeECCeEcCCccc
Confidence 33 3 8999999999988654 4 5689999999999999999996
No 3
>PLN03003 Probable polygalacturonase At3g15720
Probab=100.00 E-value=6e-67 Score=502.18 Aligned_cols=296 Identities=33% Similarity=0.574 Sum_probs=259.5
Q ss_pred HHHHhhhcccCCceEEeeecCccCCCCcchHHHHHHHHHHHhhcCCCccEEEecCc-eEEEeeeeeecccCCc-eEEEEc
Q 047946 13 FITSVRGIDATNRVLNVKDFGAVADGITDDSKAFDTSWREAWNWDGIKGTVLVPPG-KYLVSFAEFEGPCKAS-ISFQLQ 90 (321)
Q Consensus 13 ~~~~~~~~~~~~~~~~v~dfGA~~dg~tddt~Aiq~Ai~~ac~~~g~g~~v~vP~G-~y~~~~l~l~g~~~s~-v~l~i~ 90 (321)
|.|+||....++++|||+||||+|||.+|||+|||+||++||++.+ +++|+||+| +|+++++.|+|||++. ++++++
T Consensus 10 ~~~~~~~~~~~~~~fnV~~yGA~gDG~tDdT~Af~~Aw~aaC~~~g-gg~v~VP~G~~yl~~pl~l~gpck~~~~~~~i~ 88 (456)
T PLN03003 10 FSLFFLQIFTSSNALDVTQFGAVGDGVTDDSQAFLKAWEAVCSGTG-DGQFVVPAGMTFMLQPLKFQGSCKSTPVFVQML 88 (456)
T ss_pred eeeeeeeeeeeeeEEehhhcCCCCCCCcccHHHHHHHHHHhhhccC-CCEEEECCCceEEeeeeEeCCCccCcceeeccC
Confidence 3455667778899999999999999999999999999988898777 899999999 5999999999999874 788888
Q ss_pred CeEEE-------------EEEcC--CeEEec-cEEEeccccccCCccCCCCCCCCCCeeEEEEeecceEEeceeEeCCCC
Q 047946 91 GLLDL-------------FSIDT--SLSLAK-GTFHGQGETAWPLNQCHKNSDCQLPTPIRFNFLNDSTITGIKSVDSRY 154 (321)
Q Consensus 91 G~l~~-------------i~~~~--ni~I~G-G~idG~G~~~w~~~~~~~~~~~~rp~~i~~~~~~nv~I~~iti~ns~~ 154 (321)
|++++ |.|.+ +++|+| |+|||+|+.||+.. ..||+++.|.+|+|++|+|++++|||+
T Consensus 89 G~i~ap~~~~w~~~~~~wI~f~~~~~i~I~G~GtIDGqG~~wW~~~-------~~rP~~l~f~~~~nv~I~gitl~NSp~ 161 (456)
T PLN03003 89 GKLVAPSKGNWKGDKDQWILFTDIEGLVIEGDGEINGQGSSWWEHK-------GSRPTALKFRSCNNLRLSGLTHLDSPM 161 (456)
T ss_pred ceEecCccccccCCCcceEEEEcccceEEeccceEeCCchhhhhcc-------cCCceEEEEEecCCcEEeCeEEecCCc
Confidence 98874 67777 999999 99999999999742 238999999999999999999999999
Q ss_pred eEEEEEceeeEEEEeeEEecCCCC---------------------------------cccEEEEeEEEcCCCeeEEeecC
Q 047946 155 FHINILGCYNLKLNDLKITAHADS---------------------------------SKDILVSEVFCGPGQGISVGSLG 201 (321)
Q Consensus 155 ~~i~~~~s~nv~i~nv~I~~~~~~---------------------------------s~nI~I~n~~~~~~~GI~iGS~G 201 (321)
||+++..|+|+++++++|.++.++ ++||+|+||+|.++|||+|||+|
T Consensus 162 w~i~i~~c~nV~i~~l~I~ap~~spNTDGIDi~~S~nV~I~n~~I~tGDDCIaiksgs~NI~I~n~~c~~GHGISIGSlg 241 (456)
T PLN03003 162 AHIHISECNYVTISSLRINAPESSPNTDGIDVGASSNVVIQDCIIATGDDCIAINSGTSNIHISGIDCGPGHGISIGSLG 241 (456)
T ss_pred EEEEEeccccEEEEEEEEeCCCCCCCCCcEeecCcceEEEEecEEecCCCeEEeCCCCccEEEEeeEEECCCCeEEeecc
Confidence 999999999999999999997532 78999999999999999999999
Q ss_pred CCCCCCcEEEEEEEeeEEEeccceEEEEeeCCCCceeeeCcEEeeeEEecCCccEEEEeeecCCCC---CCCCCC-----
Q 047946 202 KGIKDEEVVGLTVRNCTFTCTSNGVRVKTWPDSHIGIASNFTFEDIVMNNVENPIVIDQLYCPYNK---CNIKPK----- 273 (321)
Q Consensus 202 ~~~~~~~v~nI~v~n~~i~~~~~gi~ikt~~g~~~g~v~nIt~~ni~~~~v~~~i~i~~~y~~~~~---~~~~ps----- 273 (321)
++++.+.|+||+|+||+|.++.+|+|||||+|+ +|+++||+|+||+|+++.+||+|+|+|++... |...++
T Consensus 242 ~~g~~~~V~NV~v~n~~~~~T~nGvRIKT~~Gg-~G~v~nItf~nI~m~nV~~pI~Idq~Y~~~~~~~~~~~~~s~v~Is 320 (456)
T PLN03003 242 KDGETATVENVCVQNCNFRGTMNGARIKTWQGG-SGYARMITFNGITLDNVENPIIIDQFYNGGDSDNAKDRKSSAVEVS 320 (456)
T ss_pred CCCCcceEEEEEEEeeEEECCCcEEEEEEeCCC-CeEEEEEEEEeEEecCccceEEEEcccCCCCCCCcccCCCCCcEEE
Confidence 987678999999999999999999999999976 69999999999999999999999999985321 211111
Q ss_pred ----------------------CC-C-CCEEEEeeEEEecC-cccccCCCCCcceeeeeeecccccccCCCCC
Q 047946 274 ----------------------DS-M-PNIEIGNRNLVYNG-VNVKVEGPETTSLCSNVKPTLFGKQIPATCV 321 (321)
Q Consensus 274 ----------------------~~-~-~ni~~~nI~i~~~~-~~~~~~~~~~~~~C~n~~g~~~~~~~p~~c~ 321 (321)
+. . +||+|+||+|++++ +. +++ +.|+|+||+|.+.+.++|++|+
T Consensus 321 nI~f~NI~GTs~~~~ai~l~Cs~~~PC~nI~l~ni~l~~~~~g~---~~~-~~~~C~Nv~G~~~~~~~~~~C~ 389 (456)
T PLN03003 321 KVVFSNFIGTSKSEYGVDFRCSERVPCTEIFLRDMKIETASSGS---GQV-AQGQCLNVRGASTIAVPGLECL 389 (456)
T ss_pred eEEEEeEEEEeCccceEEEEeCCCCCeeeEEEEEEEEEecCCCC---CCc-cCcEEeccccccCceECCCCcc
Confidence 33 3 99999999999874 21 024 6899999999999988888996
No 4
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=100.00 E-value=2.9e-66 Score=495.38 Aligned_cols=290 Identities=44% Similarity=0.851 Sum_probs=249.8
Q ss_pred CceEEeeecCccCCCCcchHHHHHHHHHHHhhcCCCccEEEecCceEEEeeeeeecccCCceEEEEcCeEEE--------
Q 047946 24 NRVLNVKDFGAVADGITDDSKAFDTSWREAWNWDGIKGTVLVPPGKYLVSFAEFEGPCKASISFQLQGLLDL-------- 95 (321)
Q Consensus 24 ~~~~~v~dfGA~~dg~tddt~Aiq~Ai~~ac~~~g~g~~v~vP~G~y~~~~l~l~g~~~s~v~l~i~G~l~~-------- 95 (321)
+++|||+||||+|||.+|||+|||+||++||+..| +++|+||+|+|+++++.|+|||++...|.+ +|++
T Consensus 34 ~~~~nv~d~GA~gDg~tddT~Ai~~Ai~~aC~~~G-gg~V~vP~G~yl~g~i~lkgpc~~~s~v~l--~L~~s~d~~~y~ 110 (404)
T PLN02188 34 TFLFDVRSFGARANGHTDDSKAFMAAWKAACASTG-AVTLLIPPGTYYIGPVQFHGPCTNVSSLTF--TLKAATDLSRYG 110 (404)
T ss_pred ceEEehhhcCcCCCCCeeCHHHHHHHHHHHhccCC-CeEEEECCCeEEEEeEEeCCCcCcceeEEE--EEEcCCCHHHCC
Confidence 46899999999999999999999999988898888 899999999999999999999965433333 4443
Q ss_pred -----EEEcC--CeEEec-cEEEeccccccCCccCCCCCCCC-CCeeEEEEeecceEEeceeEeCCCCeEEEEEceeeEE
Q 047946 96 -----FSIDT--SLSLAK-GTFHGQGETAWPLNQCHKNSDCQ-LPTPIRFNFLNDSTITGIKSVDSRYFHINILGCYNLK 166 (321)
Q Consensus 96 -----i~~~~--ni~I~G-G~idG~G~~~w~~~~~~~~~~~~-rp~~i~~~~~~nv~I~~iti~ns~~~~i~~~~s~nv~ 166 (321)
+.|.. |++|+| |+|||||+.||+...+.....+. ||+++.|.+|+|+.|+|++++|||+|++++..|+||+
T Consensus 111 ~~~~~i~~~~~~ni~I~G~G~IDG~G~~ww~~~~~~~~~~~~~rP~~i~f~~~~nv~i~gitl~nSp~w~i~~~~~~~v~ 190 (404)
T PLN02188 111 SGNDWIEFGWVNGLTLTGGGTFDGQGAAAWPFNKCPIRKDCKLLPTSVKFVNMNNTVVRGITSVNSKFFHIALVECRNFK 190 (404)
T ss_pred CccceEEEeceeeEEEEeeEEEeCCCcccccccccccCCCCCcCceEEEEEeeeeEEEeCeEEEcCCCeEEEEEccccEE
Confidence 56655 999999 99999999999864332222333 9999999999999999999999999999999999999
Q ss_pred EEeeEEecCCCC---------------------------------cccEEEEeEEEcCCCeeEEeecCCCCCCCcEEEEE
Q 047946 167 LNDLKITAHADS---------------------------------SKDILVSEVFCGPGQGISVGSLGKGIKDEEVVGLT 213 (321)
Q Consensus 167 i~nv~I~~~~~~---------------------------------s~nI~I~n~~~~~~~GI~iGS~G~~~~~~~v~nI~ 213 (321)
|++++|.++.++ ++||+|+|+.|.++|||+|||+|++.+.+.++||+
T Consensus 191 i~~v~I~~~~~spNtDGidi~~s~nV~I~n~~I~~GDDcIaiksg~~nI~I~n~~c~~ghGisiGSlG~~~~~~~V~nV~ 270 (404)
T PLN02188 191 GSGLKISAPSDSPNTDGIHIERSSGVYISDSRIGTGDDCISIGQGNSQVTITRIRCGPGHGISVGSLGRYPNEGDVTGLV 270 (404)
T ss_pred EEEEEEeCCCCCCCCCcEeeeCcccEEEEeeEEeCCCcEEEEccCCccEEEEEEEEcCCCcEEeCCCCCCCcCCcEEEEE
Confidence 999999987542 78999999999999999999999988788999999
Q ss_pred EEeeEEEeccceEEEEeeCCC-CceeeeCcEEeeeEEecCCccEEEEeeecCCCCCCCC-CC------------------
Q 047946 214 VRNCTFTCTSNGVRVKTWPDS-HIGIASNFTFEDIVMNNVENPIVIDQLYCPYNKCNIK-PK------------------ 273 (321)
Q Consensus 214 v~n~~i~~~~~gi~ikt~~g~-~~g~v~nIt~~ni~~~~v~~~i~i~~~y~~~~~~~~~-ps------------------ 273 (321)
|+||+|.++.+|+|||||.+. .+|.++||+|+||+|+++++||+|+|+|++...|... |+
T Consensus 271 v~n~~~~~t~~GiriKt~~g~~~~G~v~nI~f~ni~m~~v~~pI~i~~~Y~~~~~~~~~~~s~v~I~nIt~~nI~gt~~~ 350 (404)
T PLN02188 271 VRDCTFTGTTNGIRIKTWANSPGKSAATNMTFENIVMNNVTNPIIIDQKYCPFYSCESKYPSGVTLSDIYFKNIRGTSSS 350 (404)
T ss_pred EEeeEEECCCcEEEEEEecCCCCceEEEEEEEEeEEecCccceEEEEccccCCCCCCcCCCCCcEEEeEEEEEEEEEecC
Confidence 999999999999999999763 2589999999999999999999999999876544321 11
Q ss_pred ---------CC-C-CCEEEEeeEEEecCcccccCCCCCcceeeeeeecccccccCCCCC
Q 047946 274 ---------DS-M-PNIEIGNRNLVYNGVNVKVEGPETTSLCSNVKPTLFGKQIPATCV 321 (321)
Q Consensus 274 ---------~~-~-~ni~~~nI~i~~~~~~~~~~~~~~~~~C~n~~g~~~~~~~p~~c~ 321 (321)
+. . +||+|+||+++..++. ++ ..|.|+||+|++.|.++|++||
T Consensus 351 ~~a~~l~cs~~~pc~ni~~~nV~i~~~~g~----~~-~~~~C~nv~g~~~g~~~p~~C~ 404 (404)
T PLN02188 351 QVAVLLKCSRGVPCQGVYLQDVHLDLSSGE----GG-TSSSCENVRAKYIGTQIPPPCP 404 (404)
T ss_pred ceEEEEEECCCCCEeeEEEEeeEEEecCCC----CC-cCceeEcceeEEcccCcCCCCC
Confidence 33 3 8999999999988543 23 5799999999999999999997
No 5
>PLN02218 polygalacturonase ADPG
Probab=100.00 E-value=1.2e-65 Score=494.20 Aligned_cols=297 Identities=34% Similarity=0.615 Sum_probs=250.4
Q ss_pred hcccCCceEEeeecCccCCCCcchHHHHHHHHHHHhhcCCCccEEEecCc-eEEEeeeeeecccCCceEEEEcCeEEE--
Q 047946 19 GIDATNRVLNVKDFGAVADGITDDSKAFDTSWREAWNWDGIKGTVLVPPG-KYLVSFAEFEGPCKASISFQLQGLLDL-- 95 (321)
Q Consensus 19 ~~~~~~~~~~v~dfGA~~dg~tddt~Aiq~Ai~~ac~~~g~g~~v~vP~G-~y~~~~l~l~g~~~s~v~l~i~G~l~~-- 95 (321)
..++.+++|||+||||+|||++|||+|||+||++||+..| +++|+||+| +|+++++.|+|||+++++|++.|+|++
T Consensus 60 ~~~~~~~~~nv~dfGA~gDG~tddT~Af~~Ai~~aCs~~G-gg~v~vP~G~tyl~~~i~l~gp~ks~~~l~l~g~L~~s~ 138 (431)
T PLN02218 60 ASLRTPTTVSVSDFGAKGDGKTDDTQAFVNAWKKACSSNG-AVNLLVPKGNTYLLKSIQLTGPCKSIRTVQIFGTLSASQ 138 (431)
T ss_pred cccCCCcEEEeeecccCCCCCcccHHHHHHHHHHhhhcCC-CcEEEECCCCeEEEeeeEecCccCCceEEEEEEEEEeCC
Confidence 5556788999999999999999999999999988998887 889999999 699999999999999999999999987
Q ss_pred -----------EEEcC--CeEEec---cEEEeccccccCCccCCCC--CCCC-CCeeEEEEeecceEEeceeEeCCCCeE
Q 047946 96 -----------FSIDT--SLSLAK---GTFHGQGETAWPLNQCHKN--SDCQ-LPTPIRFNFLNDSTITGIKSVDSRYFH 156 (321)
Q Consensus 96 -----------i~~~~--ni~I~G---G~idG~G~~~w~~~~~~~~--~~~~-rp~~i~~~~~~nv~I~~iti~ns~~~~ 156 (321)
+.|.+ ||+|+| |+|||||+.||+.. ++.. .++. ||+++.|.+|+|++|+|++++|||+|+
T Consensus 139 d~~~y~~~~~wi~~~~~~ni~I~G~~~GtIDG~G~~WW~~~-~~~~~~~~~~~rP~~i~f~~~~nv~I~gitl~nSp~w~ 217 (431)
T PLN02218 139 KRSDYKDISKWIMFDGVNNLSVDGGSTGVVDGNGETWWQNS-CKRNKAKPCTKAPTALTFYNSKSLIVKNLRVRNAQQIQ 217 (431)
T ss_pred ChhhccccccCEEEecCcEEEEECCCCcEEeCCchhhhhcc-cccCCcCccCcCCEEEEEEccccEEEeCeEEEcCCCEE
Confidence 56666 999999 99999999999753 2222 2233 999999999999999999999999999
Q ss_pred EEEEceeeEEEEeeEEecCCCC---------------------------------cccEEEEeEEEcCCCeeEEeecCCC
Q 047946 157 INILGCYNLKLNDLKITAHADS---------------------------------SKDILVSEVFCGPGQGISVGSLGKG 203 (321)
Q Consensus 157 i~~~~s~nv~i~nv~I~~~~~~---------------------------------s~nI~I~n~~~~~~~GI~iGS~G~~ 203 (321)
+++..|+||+|+|++|.++.++ ++||+|+||+|.++|||+|||+|++
T Consensus 218 i~~~~~~nV~i~~v~I~a~~~spNTDGIdi~ss~nV~I~n~~I~tGDDcIaIksgs~nI~I~n~~c~~GHGisIGS~g~~ 297 (431)
T PLN02218 218 ISIEKCSNVQVSNVVVTAPADSPNTDGIHITNTQNIRVSNSIIGTGDDCISIESGSQNVQINDITCGPGHGISIGSLGDD 297 (431)
T ss_pred EEEEceeeEEEEEEEEeCCCCCCCCCcEeecccceEEEEccEEecCCceEEecCCCceEEEEeEEEECCCCEEECcCCCC
Confidence 9999999999999999987542 8899999999999999999999988
Q ss_pred CCCCcEEEEEEEeeEEEeccceEEEEeeCCCCceeeeCcEEeeeEEecCCccEEEEeeecCCCCCCCCCCCCC-CCEEEE
Q 047946 204 IKDEEVVGLTVRNCTFTCTSNGVRVKTWPDSHIGIASNFTFEDIVMNNVENPIVIDQLYCPYNKCNIKPKDSM-PNIEIG 282 (321)
Q Consensus 204 ~~~~~v~nI~v~n~~i~~~~~gi~ikt~~g~~~g~v~nIt~~ni~~~~v~~~i~i~~~y~~~~~~~~~ps~~~-~ni~~~ 282 (321)
...+.|+||+|+||+|.++.+|+|||||+|+ +|.|+||+|+||+|+++++||+|+|+|++...|...++.-. +||+|+
T Consensus 298 ~~~~~V~nV~v~n~~~~~t~nGvRIKT~~Gg-~G~v~nI~f~ni~m~~V~~pI~Idq~Y~~~~~~~~~~s~v~I~nI~~~ 376 (431)
T PLN02218 298 NSKAFVSGVTVDGAKLSGTDNGVRIKTYQGG-SGTASNIIFQNIQMENVKNPIIIDQDYCDKSKCTSQQSAVQVKNVVYR 376 (431)
T ss_pred CCCceEEEEEEEccEEecCCcceEEeecCCC-CeEEEEEEEEeEEEEcccccEEEEeeccCCCCCCCCCCCeEEEEEEEE
Confidence 7778999999999999999999999999976 69999999999999999999999999998666643332111 444444
Q ss_pred eeEEEecCcc-c-------------ccC----CCCCcceeeeeeecccccccCCCC
Q 047946 283 NRNLVYNGVN-V-------------KVE----GPETTSLCSNVKPTLFGKQIPATC 320 (321)
Q Consensus 283 nI~i~~~~~~-~-------------~~~----~~~~~~~C~n~~g~~~~~~~p~~c 320 (321)
||+.+..... . .++ .. ....|+||+|...|.++| .|
T Consensus 377 NI~gtsa~~~ai~l~cs~~~pc~nI~l~nV~i~~-~~~~c~n~~~~~~~~~~p-~c 430 (431)
T PLN02218 377 NISGTSASDVAITFNCSKNYPCQGIVLDNVNIKG-GKATCTNANVVDKGAVSP-QC 430 (431)
T ss_pred eEEEEecCCcEEEEEECCCCCEeeEEEEeEEEEC-CeeeEEEeeEEEcccCCC-CC
Confidence 4444432110 0 000 00 347899999999997766 77
No 6
>PLN03010 polygalacturonase
Probab=100.00 E-value=7.8e-65 Score=484.64 Aligned_cols=282 Identities=35% Similarity=0.605 Sum_probs=247.4
Q ss_pred hcccCCceEEeeecCccCCCCcchHHHHHHHHHHHhhcCCCccEEEecCc-eEEEeeeeeecccC-CceEEEEcCeEEE-
Q 047946 19 GIDATNRVLNVKDFGAVADGITDDSKAFDTSWREAWNWDGIKGTVLVPPG-KYLVSFAEFEGPCK-ASISFQLQGLLDL- 95 (321)
Q Consensus 19 ~~~~~~~~~~v~dfGA~~dg~tddt~Aiq~Ai~~ac~~~g~g~~v~vP~G-~y~~~~l~l~g~~~-s~v~l~i~G~l~~- 95 (321)
..+..+++|||+||||+|||++|||+|||+||+++|..++.+++|+||+| +|+++++.|++||+ ++++|+++|+|++
T Consensus 39 ~~~~~~~~~nV~dyGA~gDG~tddt~A~~~Ai~~ac~~~g~~g~v~vP~G~~yl~~~i~l~~pc~~~~v~l~l~G~l~~~ 118 (409)
T PLN03010 39 FGLVNGQNYNVLKFGAKGDGQTDDSNAFLQAWNATCGGEGNINTLLIPSGKTYLLQPIEFKGPCKSTSIKVQLDGIIVAP 118 (409)
T ss_pred cccCCCcEEeeeecCcCCCCCcccHHHHHHHHHHHccCCCCceEEEECCCCeEEEEeEEecCCCCCCcEEEEEccEEEcc
Confidence 34456789999999999999999999999999878864320279999999 79999999999997 5799999999887
Q ss_pred --------------EEEcC--CeEEec-cEEEeccccccCCccCCCCCCCCCCeeEEEEeecceEEeceeEeCCCCeEEE
Q 047946 96 --------------FSIDT--SLSLAK-GTFHGQGETAWPLNQCHKNSDCQLPTPIRFNFLNDSTITGIKSVDSRYFHIN 158 (321)
Q Consensus 96 --------------i~~~~--ni~I~G-G~idG~G~~~w~~~~~~~~~~~~rp~~i~~~~~~nv~I~~iti~ns~~~~i~ 158 (321)
+.|.+ |++|+| |+|||+|+.||+ ++.|.+|+|++|++++++|||+|+++
T Consensus 119 ~d~~~w~~~~~~~wi~f~~v~nv~I~G~G~IDG~G~~ww~--------------~l~~~~~~nv~v~gitl~nsp~~~i~ 184 (409)
T PLN03010 119 SNIVAWSNPKSQMWISFSTVSGLMIDGSGTIDGRGSSFWE--------------ALHISKCDNLTINGITSIDSPKNHIS 184 (409)
T ss_pred CChhhccCCCCcceEEEecccccEEeeceEEeCCCccccc--------------eEEEEeecCeEEeeeEEEcCCceEEE
Confidence 45767 999999 999999999995 48999999999999999999999999
Q ss_pred EEceeeEEEEeeEEecCCCC---------------------------------cccEEEEeEEEcCCCeeEEeecCCCCC
Q 047946 159 ILGCYNLKLNDLKITAHADS---------------------------------SKDILVSEVFCGPGQGISVGSLGKGIK 205 (321)
Q Consensus 159 ~~~s~nv~i~nv~I~~~~~~---------------------------------s~nI~I~n~~~~~~~GI~iGS~G~~~~ 205 (321)
+..|++++|++++|.++.++ ++|+.|+++.|.++|||+|||+|+++.
T Consensus 185 i~~~~nv~i~~i~I~a~~~s~NTDGiDi~~s~nV~I~n~~I~~gDDcIaiksgs~ni~I~~~~C~~gHGisIGS~g~~~~ 264 (409)
T PLN03010 185 IKTCNYVAISKINILAPETSPNTDGIDISYSTNINIFDSTIQTGDDCIAINSGSSNINITQINCGPGHGISVGSLGADGA 264 (409)
T ss_pred EeccccEEEEEEEEeCCCCCCCCCceeeeccceEEEEeeEEecCCCeEEecCCCCcEEEEEEEeECcCCEEEccCCCCCC
Confidence 99999999999999987532 567888888898999999999999876
Q ss_pred CCcEEEEEEEeeEEEeccceEEEEeeCCCCceeeeCcEEeeeEEecCCccEEEEeeecCCCC-CCCCCC-----------
Q 047946 206 DEEVVGLTVRNCTFTCTSNGVRVKTWPDSHIGIASNFTFEDIVMNNVENPIVIDQLYCPYNK-CNIKPK----------- 273 (321)
Q Consensus 206 ~~~v~nI~v~n~~i~~~~~gi~ikt~~g~~~g~v~nIt~~ni~~~~v~~~i~i~~~y~~~~~-~~~~ps----------- 273 (321)
...|+||+|+||+|.++.+|+|||+|.|+ +|.|+||+|+||+|+++++||+|+|+|++... |...++
T Consensus 265 ~~~V~nV~v~n~~i~~t~~GirIKt~~G~-~G~v~nItf~nI~m~~v~~pI~I~q~Y~~~~~~~~~~~s~v~Isdi~~~n 343 (409)
T PLN03010 265 NAKVSDVHVTHCTFNQTTNGARIKTWQGG-QGYARNISFENITLINTKNPIIIDQQYIDKGKLDATKDSAVAISNVKYVG 343 (409)
T ss_pred CCeeEEEEEEeeEEeCCCcceEEEEecCC-CEEEEEeEEEeEEEecCCccEEEEeeccCCCCCCCCCCCceEEEeEEEEe
Confidence 78899999999999999999999999976 59999999999999999999999999987432 422221
Q ss_pred ----------------C-CC-CCEEEEeeEEEecCcccccCCCCCcceeeeeeecccccccCCCCC
Q 047946 274 ----------------D-SM-PNIEIGNRNLVYNGVNVKVEGPETTSLCSNVKPTLFGKQIPATCV 321 (321)
Q Consensus 274 ----------------~-~~-~ni~~~nI~i~~~~~~~~~~~~~~~~~C~n~~g~~~~~~~p~~c~ 321 (321)
+ .. +||+|+||+++..+++ + ..+.|+|++|++.+.++|.+||
T Consensus 344 i~GT~~~~~~i~l~Cs~~~pC~ni~~~~v~l~~~~g~-----~-~~~~C~nv~g~~~~~~~~~~C~ 403 (409)
T PLN03010 344 FRGTTSNENAITLKCSAITHCKDVVMDDIDVTMENGE-----K-PKVECQNVEGESSDTDLMRDCF 403 (409)
T ss_pred eEEEeCCCccEEEEeCCCCCEeceEEEEEEEEecCCC-----c-cceEeeCccccccCCCCCCccc
Confidence 2 23 8999999999998754 4 6799999999999999999997
No 7
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=100.00 E-value=2.7e-45 Score=344.84 Aligned_cols=235 Identities=35% Similarity=0.599 Sum_probs=192.5
Q ss_pred hhcCCCccEEEecCceEEEeeeeeecccCCceEEEEcCeEEE------------EEEcC--CeEEec-cEEEeccccccC
Q 047946 54 WNWDGIKGTVLVPPGKYLVSFAEFEGPCKASISFQLQGLLDL------------FSIDT--SLSLAK-GTFHGQGETAWP 118 (321)
Q Consensus 54 c~~~g~g~~v~vP~G~y~~~~l~l~g~~~s~v~l~i~G~l~~------------i~~~~--ni~I~G-G~idG~G~~~w~ 118 (321)
|++.+ +++|+||+|+|+++++.|++++.++++++|+|++.+ |.+.+ ++.|+| |+|||+|+.||+
T Consensus 1 C~~~~-~~~v~vP~g~~~~~~~~l~~~l~~~~~~~l~G~~~~~~~~~~~~~~~~i~~~~~~ni~i~G~G~IDG~G~~w~~ 79 (326)
T PF00295_consen 1 CSSIG-GGTVVVPAGTYLLGPLFLKSTLHSDVGLTLDGTINFSYDNWEGPNSALIYAENAENITITGKGTIDGNGQAWWD 79 (326)
T ss_dssp HSEEE-EESEEESTSTEEEEETSEETECETTCEEEEESEEEEG-EESTSE-SEEEEEESEEEEECTTSSEEE--GGGTCS
T ss_pred CcCCc-CCEEEECCCCeEEceeEEEcccCCCeEEEEEEEEEeCCCcccCCccEEEEEEceEEEEecCCceEcCchhhhhc
Confidence 55555 789999999999999999988778999999998776 55666 999999 999999999998
Q ss_pred CccCCCCCCCCCCeeEEEEeecceEEeceeEeCCCCeEEEEEceeeEEEEeeEEecCCCC--------------------
Q 047946 119 LNQCHKNSDCQLPTPIRFNFLNDSTITGIKSVDSRYFHINILGCYNLKLNDLKITAHADS-------------------- 178 (321)
Q Consensus 119 ~~~~~~~~~~~rp~~i~~~~~~nv~I~~iti~ns~~~~i~~~~s~nv~i~nv~I~~~~~~-------------------- 178 (321)
...........||+++.|.+|+|++|++++++|||+|++++..|+|+++++++|.++.+.
T Consensus 80 ~~~~~~~~~~~rp~~i~~~~~~~~~i~~i~~~nsp~w~~~~~~~~nv~i~~i~I~~~~~~~NtDGid~~~s~nv~I~n~~ 159 (326)
T PF00295_consen 80 GSGDANNNGQRRPRLIRFNNCKNVTIEGITIRNSPFWHIHINDCDNVTISNITINNPANSPNTDGIDIDSSKNVTIENCF 159 (326)
T ss_dssp SCTTHCCSSSSSSESEEEEEEEEEEEESEEEES-SSESEEEESEEEEEEESEEEEEGGGCTS--SEEEESEEEEEEESEE
T ss_pred cccccccccccccceeeeeeecceEEEeeEecCCCeeEEEEEccCCeEEcceEEEecCCCCCcceEEEEeeeEEEEEEee
Confidence 641111222349999999999999999999999999999999999999999999986431
Q ss_pred -------------cccEEEEeEEEcCCCeeEEeecCCCCCCCcEEEEEEEeeEEEeccceEEEEeeCCCCceeeeCcEEe
Q 047946 179 -------------SKDILVSEVFCGPGQGISVGSLGKGIKDEEVVGLTVRNCTFTCTSNGVRVKTWPDSHIGIASNFTFE 245 (321)
Q Consensus 179 -------------s~nI~I~n~~~~~~~GI~iGS~G~~~~~~~v~nI~v~n~~i~~~~~gi~ikt~~g~~~g~v~nIt~~ 245 (321)
+.||+|+||+|.++||++|||++..+....++||+|+||+|.++.+|+|||+|+++ +|.|+||+|+
T Consensus 160 i~~gDD~Iaiks~~~ni~v~n~~~~~ghGisiGS~~~~~~~~~i~nV~~~n~~i~~t~~gi~iKt~~~~-~G~v~nI~f~ 238 (326)
T PF00295_consen 160 IDNGDDCIAIKSGSGNILVENCTCSGGHGISIGSEGSGGSQNDIRNVTFENCTIINTDNGIRIKTWPGG-GGYVSNITFE 238 (326)
T ss_dssp EESSSESEEESSEECEEEEESEEEESSSEEEEEEESSSSE--EEEEEEEEEEEEESESEEEEEEEETTT-SEEEEEEEEE
T ss_pred cccccCcccccccccceEEEeEEEeccccceeeeccCCccccEEEeEEEEEEEeeccceEEEEEEeccc-ceEEeceEEE
Confidence 55999999999999999999998765456799999999999999999999999865 6999999999
Q ss_pred eeEEecCCccEEEEeeecCCCCCCCCCCCCC-CCEEEEeeEEEecC
Q 047946 246 DIVMNNVENPIVIDQLYCPYNKCNIKPKDSM-PNIEIGNRNLVYNG 290 (321)
Q Consensus 246 ni~~~~v~~~i~i~~~y~~~~~~~~~ps~~~-~ni~~~nI~i~~~~ 290 (321)
||+|+++.+||.|++.|.+...|...|+... +||+|+||+.+..+
T Consensus 239 ni~~~~v~~pi~i~~~y~~~~~~~~~~~~~~i~nI~~~nitg~~~~ 284 (326)
T PF00295_consen 239 NITMENVKYPIFIDQDYRDGGPCGKPPSGVSISNITFRNITGTSAG 284 (326)
T ss_dssp EEEEEEESEEEEEEEEECTTEESSCSSSSSEEEEEEEEEEEEEEST
T ss_pred EEEecCCceEEEEEeccccccccCcccCCceEEEEEEEeeEEEecc
Confidence 9999999999999999987544432222111 66666666666654
No 8
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=1.5e-35 Score=288.85 Aligned_cols=226 Identities=27% Similarity=0.430 Sum_probs=189.0
Q ss_pred CCceEEeeecCccCCCCcchHHHHHHHHHHHhhcCCCccEEEecCceEEEeeeeeecccCCceEEEEc-C-eEEE-----
Q 047946 23 TNRVLNVKDFGAVADGITDDSKAFDTSWREAWNWDGIKGTVLVPPGKYLVSFAEFEGPCKASISFQLQ-G-LLDL----- 95 (321)
Q Consensus 23 ~~~~~~v~dfGA~~dg~tddt~Aiq~Ai~~ac~~~g~g~~v~vP~G~y~~~~l~l~g~~~s~v~l~i~-G-~l~~----- 95 (321)
..+.++|.+|||++||.+||++|||+|| ++|+..+ |++|+||+|+|+.++|.|| |+++|+++ | +|.+
T Consensus 79 ~~t~~sv~~~ga~gDG~t~~~~aiq~AI-~~ca~a~-Gg~V~lPaGtylsg~l~LK----S~~~L~l~egatl~~~~~p~ 152 (542)
T COG5434 79 TDTAFSVSDDGAVGDGATDNTAAIQAAI-DACASAG-GGTVLLPAGTYLSGPLFLK----SNVTLHLAEGATLLASSNPK 152 (542)
T ss_pred ccceeeeccccccccCCccCHHHHHHHH-Hhhhhhc-CceEEECCceeEeeeEEEe----cccEEEecCCceeeCCCChh
Confidence 3457999999999999999999999999 6787677 8999999999999999999 99999995 8 6654
Q ss_pred --E-------------------------------------EEcC--Ce-EEec-cEEEecc----ccccCCccC-CCCCC
Q 047946 96 --F-------------------------------------SIDT--SL-SLAK-GTFHGQG----ETAWPLNQC-HKNSD 127 (321)
Q Consensus 96 --i-------------------------------------~~~~--ni-~I~G-G~idG~G----~~~w~~~~~-~~~~~ 127 (321)
. .... +. .|.| |+++|++ ..||..... .....
T Consensus 153 ~y~~~~~~~~~~~~~~~~a~~~~~~~~~~~g~~d~~~~~~~~~~~~n~~~i~g~~~i~g~~~~~g~~~~~~~g~~~~~i~ 232 (542)
T COG5434 153 DYPSFTSRFNGNSGPYVYATDSDNAMISGEGLADGKADLLIAGNSSNRKEIWGKGTIDGNGYKRGDKWFSGLGAVETRIG 232 (542)
T ss_pred hccccccccccccCcceeeecccCceeeeecccccCcccceeccCCceEEEeccceecCccccchhhhhhcccchhhccc
Confidence 0 0001 33 4888 8999975 227765310 01112
Q ss_pred C--CCCeeEEEEeecceEEeceeEeCCCCeEEEEEceeeEEEEeeEEecCCCC---------------------------
Q 047946 128 C--QLPTPIRFNFLNDSTITGIKSVDSRYFHINILGCYNLKLNDLKITAHADS--------------------------- 178 (321)
Q Consensus 128 ~--~rp~~i~~~~~~nv~I~~iti~ns~~~~i~~~~s~nv~i~nv~I~~~~~~--------------------------- 178 (321)
. .||..+.+..|+|++++|+++.++|.|++|+..|+|++++|++|.++...
T Consensus 233 ~~~~rp~~~~l~~c~NV~~~g~~i~ns~~~~~h~~~~~nl~~~nl~I~~~~~~NtDG~d~~sc~NvlI~~~~fdtgDD~I 312 (542)
T COG5434 233 GKGVRPRTVVLKGCRNVLLEGLNIKNSPLWTVHPVDCDNLTFRNLTIDANRFDNTDGFDPGSCSNVLIEGCRFDTGDDCI 312 (542)
T ss_pred ccCcCCceEEEeccceEEEeeeEecCCCcEEEeeecccCceecceEEECCCCCCCCccccccceeEEEeccEEecCCceE
Confidence 2 48999999999999999999999999999999999999999999987651
Q ss_pred ----------------cccEEEEeEEEcCCCe-eEEeecCCCCCCCcEEEEEEEeeEEEeccceEEEEeeCCCCceeeeC
Q 047946 179 ----------------SKDILVSEVFCGPGQG-ISVGSLGKGIKDEEVVGLTVRNCTFTCTSNGVRVKTWPDSHIGIASN 241 (321)
Q Consensus 179 ----------------s~nI~I~n~~~~~~~G-I~iGS~G~~~~~~~v~nI~v~n~~i~~~~~gi~ikt~~g~~~g~v~n 241 (321)
++||+|+||++..+|| +.+||+ +.+.++||+++||.|.++.+|||||+..+. +|.++|
T Consensus 313 ~iksg~~~~~~~~~~~~~~i~i~~c~~~~ghG~~v~Gse----~~ggv~ni~ved~~~~~~d~GLRikt~~~~-gG~v~n 387 (542)
T COG5434 313 AIKSGAGLDGKKGYGPSRNIVIRNCYFSSGHGGLVLGSE----MGGGVQNITVEDCVMDNTDRGLRIKTNDGR-GGGVRN 387 (542)
T ss_pred EeecccCCcccccccccccEEEecceecccccceEeeee----cCCceeEEEEEeeeeccCcceeeeeeeccc-ceeEEE
Confidence 6889999999999995 888998 578999999999999999999999999866 699999
Q ss_pred cEEeeeEEecCCccEEEE
Q 047946 242 FTFEDIVMNNVENPIVID 259 (321)
Q Consensus 242 It~~ni~~~~v~~~i~i~ 259 (321)
|+|++++|.++..+..|.
T Consensus 388 I~~~~~~~~nv~t~~~i~ 405 (542)
T COG5434 388 IVFEDNKMRNVKTKLSIN 405 (542)
T ss_pred EEEecccccCcccceeee
Confidence 999999999986544443
No 9
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=99.90 E-value=2e-22 Score=191.37 Aligned_cols=208 Identities=16% Similarity=0.111 Sum_probs=162.0
Q ss_pred cCCceEEeeecCccCCCCcchHHHHHHHHHHHhhcCCCccEEEecCceEEEeeeeeecccCCceEEEEc-CeE----EE-
Q 047946 22 ATNRVLNVKDFGAVADGITDDSKAFDTSWREAWNWDGIKGTVLVPPGKYLVSFAEFEGPCKASISFQLQ-GLL----DL- 95 (321)
Q Consensus 22 ~~~~~~~v~dfGA~~dg~tddt~Aiq~Ai~~ac~~~g~g~~v~vP~G~y~~~~l~l~g~~~s~v~l~i~-G~l----~~- 95 (321)
...+.+|+++|||++||.+|+|+|||+||+ +|+.. +++|.+|+|+|+.+++.|+ ++++|..+ |.. ..
T Consensus 33 ~p~r~~dv~~fGa~~dG~td~T~ALQaAId-aAa~g--G~tV~Lp~G~Y~~G~L~L~----spltL~G~~gAt~~vIdG~ 105 (455)
T TIGR03808 33 TSTLGRDATQYGVRPNSPDDQTRALQRAID-EAARA--QTPLALPPGVYRTGPLRLP----SGAQLIGVRGATRLVFTGG 105 (455)
T ss_pred CCccCCCHHHcCcCCCCcchHHHHHHHHHH-HhhcC--CCEEEECCCceecccEEEC----CCcEEEecCCcEEEEEcCC
Confidence 344569999999999999999999999995 45533 4689999999999999999 89999887 442 11
Q ss_pred ---E-EEcC-CeEEeccEEEeccccccCCccCCCCCCCCCCeeEEEEeecceEEeceeEeCCCCeEEEEEceeeEEEEee
Q 047946 96 ---F-SIDT-SLSLAKGTFHGQGETAWPLNQCHKNSDCQLPTPIRFNFLNDSTITGIKSVDSRYFHINILGCYNLKLNDL 170 (321)
Q Consensus 96 ---i-~~~~-ni~I~GG~idG~G~~~w~~~~~~~~~~~~rp~~i~~~~~~nv~I~~iti~ns~~~~i~~~~s~nv~i~nv 170 (321)
+ .... +|+|+|-+|||.|..|.. +|.++.+.+|++++|+++++.++..|+|.+..|+ ..|.+-
T Consensus 106 ~~lIiai~A~nVTIsGLtIdGsG~dl~~-----------rdAgI~v~~a~~v~Iedn~L~gsg~FGI~L~~~~-~~I~~N 173 (455)
T TIGR03808 106 PSLLSSEGADGIGLSGLTLDGGGIPLPQ-----------RRGLIHCQGGRDVRITDCEITGSGGNGIWLETVS-GDISGN 173 (455)
T ss_pred ceEEEEecCCCeEEEeeEEEeCCCcccC-----------CCCEEEEccCCceEEEeeEEEcCCcceEEEEcCc-ceEecc
Confidence 2 3333 999999999999975432 6789999999999999999999999999999999 667777
Q ss_pred EEecCCCC------cccEEEEeEEEcC--CCeeEEeec------------------------CCCCCC---CcEEEEEEE
Q 047946 171 KITAHADS------SKDILVSEVFCGP--GQGISVGSL------------------------GKGIKD---EEVVGLTVR 215 (321)
Q Consensus 171 ~I~~~~~~------s~nI~I~n~~~~~--~~GI~iGS~------------------------G~~~~~---~~v~nI~v~ 215 (321)
+|....+. +.+.+|+++++.+ +.||.|--. ++++.. ....+++|+
T Consensus 174 ~I~g~~~~~I~lw~S~g~~V~~N~I~g~RD~gi~i~r~~~~~dg~~v~~n~i~~i~a~~gg~~~~GNGI~~~~a~~v~V~ 253 (455)
T TIGR03808 174 TITQIAVTAIVSFDALGLIVARNTIIGANDNGIEILRSAIGDDGTIVTDNRIEDIKAGPGGSGQYGNAINAFRAGNVIVR 253 (455)
T ss_pred eEeccccceEEEeccCCCEEECCEEEccCCCCeEEEEeeecCCcceeeccccccccccCCCcCCccccEEEEccCCeEEE
Confidence 77665543 8899999998865 446666533 333322 245689999
Q ss_pred eeEEEecc-ceEEEEeeCCCCceeeeCcEEeeeEEecCCc-cE
Q 047946 216 NCTFTCTS-NGVRVKTWPDSHIGIASNFTFEDIVMNNVEN-PI 256 (321)
Q Consensus 216 n~~i~~~~-~gi~ikt~~g~~~g~v~nIt~~ni~~~~v~~-~i 256 (321)
++++.+++ .|||+.+. +|+.|++..++++++ ++
T Consensus 254 gN~I~~~r~dgI~~nss--------s~~~i~~N~~~~~R~~al 288 (455)
T TIGR03808 254 GNRIRNCDYSAVRGNSA--------SNIQITGNSVSDVREVAL 288 (455)
T ss_pred CCEEeccccceEEEEcc--------cCcEEECcEeeeeeeeEE
Confidence 99999999 89988853 566677777766666 54
No 10
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=99.87 E-value=2.1e-20 Score=165.76 Aligned_cols=193 Identities=25% Similarity=0.393 Sum_probs=131.2
Q ss_pred eEEeeecCccCCCCcchHHHHHHHHHHHhhcCCCccEEEecCceEEEee-eeeecccCCceEEEEcC---eEEE------
Q 047946 26 VLNVKDFGAVADGITDDSKAFDTSWREAWNWDGIKGTVLVPPGKYLVSF-AEFEGPCKASISFQLQG---LLDL------ 95 (321)
Q Consensus 26 ~~~v~dfGA~~dg~tddt~Aiq~Ai~~ac~~~g~g~~v~vP~G~y~~~~-l~l~g~~~s~v~l~i~G---~l~~------ 95 (321)
.+||+||||++||.+|||+|||+||++ .+..+ +++||||+|+|+++. +.++ ++++|+.+| ++..
T Consensus 1 ~inv~~fGa~~dG~tDdt~Aiq~Ai~~-~~~~~-g~~v~~P~G~Y~i~~~l~~~----s~v~l~G~g~~~~~~~~~~~~~ 74 (225)
T PF12708_consen 1 FINVTDFGAKGDGVTDDTAAIQAAIDA-AAAAG-GGVVYFPPGTYRISGTLIIP----SNVTLRGAGGNSTILFLSGSGD 74 (225)
T ss_dssp EEEGGGGT--TEEEEE-HHHHHHHHHH-HCSTT-SEEEEE-SEEEEESS-EEE-----TTEEEEESSTTTEEEEECTTTS
T ss_pred CcceeecCcCCCCChhHHHHHHHhhhh-cccCC-CeEEEEcCcEEEEeCCeEcC----CCeEEEccCCCeeEEEecCccc
Confidence 479999999999999999999999944 44445 799999999999986 8888 899999986 2222
Q ss_pred --------EEEcC---CeE--EeccEEEeccccccCCccCCCCCCCCCCeeEEEEeecceEEeceeEeCCCCeEEEEEce
Q 047946 96 --------FSIDT---SLS--LAKGTFHGQGETAWPLNQCHKNSDCQLPTPIRFNFLNDSTITGIKSVDSRYFHINILGC 162 (321)
Q Consensus 96 --------i~~~~---ni~--I~GG~idG~G~~~w~~~~~~~~~~~~rp~~i~~~~~~nv~I~~iti~ns~~~~i~~~~s 162 (321)
..+.. ++. |.+-+||+++...-. ....+.+..++++.|+++++.++...++.+..+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~i~nl~i~~~~~~~~~-----------~~~~i~~~~~~~~~i~nv~~~~~~~~~i~~~~~ 143 (225)
T PF12708_consen 75 SFSVVPGIGVFDSGNSNIGIQIRNLTIDGNGIDPNN-----------NNNGIRFNSSQNVSISNVRIENSGGDGIYFNTG 143 (225)
T ss_dssp TSCCEEEEEECCSCSCCEEEEEEEEEEEETCGCE-S-----------CEEEEEETTEEEEEEEEEEEES-SS-SEEEECC
T ss_pred ccccccceeeeecCCCCceEEEEeeEEEcccccCCC-----------CceEEEEEeCCeEEEEeEEEEccCccEEEEEcc
Confidence 11111 222 566667776643211 135788888999999999999987777777755
Q ss_pred eeEEEE------eeEEecCCCCcccEEEEeEEEcCC-CeeEEeecCCCCCCCcEEEEEEEeeEEEe-ccceEEEEeeCCC
Q 047946 163 YNLKLN------DLKITAHADSSKDILVSEVFCGPG-QGISVGSLGKGIKDEEVVGLTVRNCTFTC-TSNGVRVKTWPDS 234 (321)
Q Consensus 163 ~nv~i~------nv~I~~~~~~s~nI~I~n~~~~~~-~GI~iGS~G~~~~~~~v~nI~v~n~~i~~-~~~gi~ikt~~g~ 234 (321)
....+. ++.+.. ++.++.+.++....+ +|+..++ ++++++||++.+ ...|+.+....
T Consensus 144 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~~~~~----------~~~~i~n~~~~~~~~~gi~i~~~~-- 208 (225)
T PF12708_consen 144 TDYRIIGSTHVSGIFIDN---GSNNVIVNNCIFNGGDNGIILGN----------NNITISNNTFEGNCGNGINIEGGS-- 208 (225)
T ss_dssp EECEEECCEEEEEEEEES---CEEEEEEECEEEESSSCSEECEE----------EEEEEECEEEESSSSESEEEEECS--
T ss_pred ccCcEeecccceeeeecc---ceeEEEECCccccCCCceeEeec----------ceEEEEeEEECCccceeEEEECCe--
Confidence 544443 333433 135677788877654 3644432 899999999998 78899888532
Q ss_pred CceeeeCcEEeeeEEecCCccE
Q 047946 235 HIGIASNFTFEDIVMNNVENPI 256 (321)
Q Consensus 235 ~~g~v~nIt~~ni~~~~v~~~i 256 (321)
+++++|++++++..+|
T Consensus 209 ------~~~i~n~~i~~~~~g~ 224 (225)
T PF12708_consen 209 ------NIIISNNTIENCDDGI 224 (225)
T ss_dssp ------EEEEEEEEEESSSEEE
T ss_pred ------EEEEEeEEEECCccCc
Confidence 2778888888777664
No 11
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of dextranase (3.2.1.11 from EC) and isopullulanase (3.2.1.57 from EC) which are all members of glycoside hydrolase family 49 (GH49 from CAZY). Dextranase hydrolyses alpha-1,6-glycosidic bonds in dextran polymers.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1X0C_A 1WMR_A 2Z8G_B 1OGM_X 1OGO_X.
Probab=99.45 E-value=4.8e-12 Score=122.13 Aligned_cols=213 Identities=15% Similarity=0.195 Sum_probs=126.1
Q ss_pred ccEEEecCceEEEee---eeeecccCCc-eEEEEc-CeEEE--EEEcC---CeEEec-cEEEeccccccCCccCC-----
Q 047946 60 KGTVLVPPGKYLVSF---AEFEGPCKAS-ISFQLQ-GLLDL--FSIDT---SLSLAK-GTFHGQGETAWPLNQCH----- 123 (321)
Q Consensus 60 g~~v~vP~G~y~~~~---l~l~g~~~s~-v~l~i~-G~l~~--i~~~~---ni~I~G-G~idG~G~~~w~~~~~~----- 123 (321)
..++||+||+|.++. +.|. ++ .+++++ |+++. |.|.+ |+.|+| |+|+|.-..|-......
T Consensus 232 ~~~lYF~PGVy~ig~~~~l~L~----sn~~~VYlApGAyVkGAf~~~~~~~nv~i~G~GVLSGe~Yvy~A~~~e~y~~~s 307 (582)
T PF03718_consen 232 KDTLYFKPGVYWIGSDYHLRLP----SNTKWVYLAPGAYVKGAFEYTDTQQNVKITGRGVLSGEQYVYEADTEESYLHLS 307 (582)
T ss_dssp SSEEEE-SEEEEEBCTC-EEE-----TT--EEEE-TTEEEES-EEE---SSEEEEESSSEEE-TTS-TTBBCCCTTSB-S
T ss_pred cceEEeCCceEEeCCCccEEEC----CCccEEEEcCCcEEEEEEEEccCCceEEEEeeEEEcCcceeEeccCCCCccccc
Confidence 469999999999986 6776 77 479999 77665 66654 999999 99999887764322100
Q ss_pred CCCCCCC--CeeEEEEe---ecceEEeceeEeCCCCeEEEEEcee----eEEEEeeEEecCCCC-------cccEEEEeE
Q 047946 124 KNSDCQL--PTPIRFNF---LNDSTITGIKSVDSRYFHINILGCY----NLKLNDLKITAHADS-------SKDILVSEV 187 (321)
Q Consensus 124 ~~~~~~r--p~~i~~~~---~~nv~I~~iti~ns~~~~i~~~~s~----nv~i~nv~I~~~~~~-------s~nI~I~n~ 187 (321)
...++.| =+++.+.. +.++.++|+||.++|+|.+.+.+-+ +..|+|.++.+.... .+|-+|+||
T Consensus 308 ~A~~~~~~~lkm~~~~~~~g~q~~~~~GiTI~~pP~~Sm~l~g~~~~~~~~~i~nyKqVGaW~~qtDGi~ly~nS~i~dc 387 (582)
T PF03718_consen 308 GAVKCHRESLKMLWHISANGGQTLTCEGITINDPPFHSMDLYGNENDKFSMNISNYKQVGAWYFQTDGIELYPNSTIRDC 387 (582)
T ss_dssp SC---TTTB--SEEECS-SSSEEEEEES-EEE--SS-SEEEESSSGGGEEEEEEEEEEE---CTT----B--TT-EEEEE
T ss_pred cccccchhhhhhhhhhccCCcceEEEEeeEecCCCcceEEecCCccccccceeeceeeeeeEEeccCCccccCCCeeeee
Confidence 0111222 24565444 5589999999999999999999544 589999999975533 788899999
Q ss_pred EEcC-CCeeEEeecCCCCCCCcEEEEEEEeeEEEeccceEEEE-eeCCCCceeeeCcEEeeeEEecC---------CccE
Q 047946 188 FCGP-GQGISVGSLGKGIKDEEVVGLTVRNCTFTCTSNGVRVK-TWPDSHIGIASNFTFEDIVMNNV---------ENPI 256 (321)
Q Consensus 188 ~~~~-~~GI~iGS~G~~~~~~~v~nI~v~n~~i~~~~~gi~ik-t~~g~~~g~v~nIt~~ni~~~~v---------~~~i 256 (321)
.++. +++|.+- ..++.++||+++...+|--|. .|. +..++||+|+|+.+-.. ..+|
T Consensus 388 F~h~nDD~iKlY----------hS~v~v~~~ViWk~~Ngpiiq~GW~---pr~isnv~veni~IIh~r~~~~~~~~n~~I 454 (582)
T PF03718_consen 388 FIHVNDDAIKLY----------HSNVSVSNTVIWKNENGPIIQWGWT---PRNISNVSVENIDIIHNRWIWHNNYVNTAI 454 (582)
T ss_dssp EEEESS-SEE------------STTEEEEEEEEEE-SSS-SEE--CS------EEEEEEEEEEEEE---SSGGCTTT-EC
T ss_pred EEEecCchhhee----------ecCcceeeeEEEecCCCCeEEeecc---ccccCceEEeeeEEEeeeeecccCCCCcee
Confidence 9875 6688662 278999999999988875443 233 46799999999998432 2344
Q ss_pred EEE-eeecCCCCC-CCCCCCCCCCEEEEeeEEEec
Q 047946 257 VID-QLYCPYNKC-NIKPKDSMPNIEIGNRNLVYN 289 (321)
Q Consensus 257 ~i~-~~y~~~~~~-~~~ps~~~~ni~~~nI~i~~~ 289 (321)
+-- .+|.+...- ..+|+..+++++|+||..+..
T Consensus 455 ~~ss~~y~~~~s~~~adp~~ti~~~~~~nv~~EG~ 489 (582)
T PF03718_consen 455 LGSSPFYDDMASTKTADPSTTIRNMTFSNVRCEGM 489 (582)
T ss_dssp EEE--BTTS-SSS--BEEEEEEEEEEEEEEEEECC
T ss_pred EecccccccccCCCCCCcccceeeEEEEeEEEecc
Confidence 443 345322110 011211126777777776654
No 12
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=99.40 E-value=1.2e-11 Score=115.83 Aligned_cols=142 Identities=15% Similarity=0.270 Sum_probs=98.7
Q ss_pred HHHHHHHHhhcCCCccEEEecCceEEE-eeeeeecccCCceEEEEcCeEEEEEEcCCeEEeccEEEeccccccCCccCCC
Q 047946 46 FDTSWREAWNWDGIKGTVLVPPGKYLV-SFAEFEGPCKASISFQLQGLLDLFSIDTSLSLAKGTFHGQGETAWPLNQCHK 124 (321)
Q Consensus 46 iq~Ai~~ac~~~g~g~~v~vP~G~y~~-~~l~l~g~~~s~v~l~i~G~l~~i~~~~ni~I~GG~idG~G~~~w~~~~~~~ 124 (321)
||+|+++| +. |.+|++|+|+|.+ +++.+.. ++++|.-+|. +- -+||+.++..
T Consensus 1 iQ~Ai~~A-~~---GDtI~l~~G~Y~~~~~l~I~~---~~Iti~G~g~--------~~----tvid~~~~~~-------- 53 (314)
T TIGR03805 1 LQEALIAA-QP---GDTIVLPEGVFQFDRTLSLDA---DGVTIRGAGM--------DE----TILDFSGQVG-------- 53 (314)
T ss_pred CHhHHhhC-CC---CCEEEECCCEEEcceeEEEeC---CCeEEEecCC--------Cc----cEEecccCCC--------
Confidence 68998543 32 4699999999986 4666652 4555543331 00 1467666521
Q ss_pred CCCCCCCeeEEEEeecceEEeceeEeCCCCeEEEEEceeeEEEEeeEEecCC--------CC-----cccEEEEeEEEcC
Q 047946 125 NSDCQLPTPIRFNFLNDSTITGIKSVDSRYFHINILGCYNLKLNDLKITAHA--------DS-----SKDILVSEVFCGP 191 (321)
Q Consensus 125 ~~~~~rp~~i~~~~~~nv~I~~iti~ns~~~~i~~~~s~nv~i~nv~I~~~~--------~~-----s~nI~I~n~~~~~ 191 (321)
....+ ...+++++|+++++.+++.++|.+..|++++|+++++.... +. |++++|++|++.+
T Consensus 54 -----~~~~i-~v~a~~VtI~~ltI~~~~~~GI~v~~s~~i~I~n~~i~~~~~~~~~~~~~GI~~~~s~~v~I~~n~i~g 127 (314)
T TIGR03805 54 -----GAEGL-LVTSDDVTLSDLAVENTKGDGVKVKGSDGIIIRRLRVEWTGGPKSSNGAYGIYPVESTNVLVEDSYVRG 127 (314)
T ss_pred -----CCceE-EEEeCCeEEEeeEEEcCCCCeEEEeCCCCEEEEeeEEEeccCccccCCcceEEEeccCCEEEECCEEEC
Confidence 01233 33588999999999999888999999999999999987332 11 8899999999876
Q ss_pred C--CeeEEeecCCCCCCCcEEEEEEEeeEEEeccceEEEE
Q 047946 192 G--QGISVGSLGKGIKDEEVVGLTVRNCTFTCTSNGVRVK 229 (321)
Q Consensus 192 ~--~GI~iGS~G~~~~~~~v~nI~v~n~~i~~~~~gi~ik 229 (321)
. .||.++. .++++|+|+++++...||.+.
T Consensus 128 ~~d~GIyv~~---------s~~~~v~nN~~~~n~~GI~i~ 158 (314)
T TIGR03805 128 ASDAGIYVGQ---------SQNIVVRNNVAEENVAGIEIE 158 (314)
T ss_pred CCcccEEECC---------CCCeEEECCEEccCcceEEEE
Confidence 3 3777753 267888888888888888776
No 13
>PLN02793 Probable polygalacturonase
Probab=99.24 E-value=1e-09 Score=107.04 Aligned_cols=125 Identities=18% Similarity=0.230 Sum_probs=94.0
Q ss_pred eEEEEeecceEEeceeEeCCC---C-eEEEEEceeeEEEEeeEEec----------------------CCC---------
Q 047946 133 PIRFNFLNDSTITGIKSVDSR---Y-FHINILGCYNLKLNDLKITA----------------------HAD--------- 177 (321)
Q Consensus 133 ~i~~~~~~nv~I~~iti~ns~---~-~~i~~~~s~nv~i~nv~I~~----------------------~~~--------- 177 (321)
.+.+..|+|++|+++++.++. . .+|++..|+||+|+|++|.+ +++
T Consensus 202 ~i~~~~~~nv~i~~l~I~~p~~spNTDGIdi~~s~nV~I~n~~I~~gDDcIaik~~s~nI~I~n~~c~~GhGisIGSlg~ 281 (443)
T PLN02793 202 HIAFTNCRRVTISGLKVIAPATSPNTDGIHISASRGVVIKDSIVRTGDDCISIVGNSSRIKIRNIACGPGHGISIGSLGK 281 (443)
T ss_pred EEEEEccCcEEEEEEEEECCCCCCCCCcEeeeccceEEEEeCEEeCCCCeEEecCCcCCEEEEEeEEeCCccEEEecccC
Confidence 477788999999999998743 2 67888888888888887662 111
Q ss_pred -----CcccEEEEeEEEcCC-CeeEEeecCCCCCCCcEEEEEEEeeEEEeccceEEEEeeCCC---------CceeeeCc
Q 047946 178 -----SSKDILVSEVFCGPG-QGISVGSLGKGIKDEEVVGLTVRNCTFTCTSNGVRVKTWPDS---------HIGIASNF 242 (321)
Q Consensus 178 -----~s~nI~I~n~~~~~~-~GI~iGS~G~~~~~~~v~nI~v~n~~i~~~~~gi~ikt~~g~---------~~g~v~nI 242 (321)
..+||+|+||++.+. .|+.|++.-. ..+.++||+|+|++|.+..++|.|...... ....++||
T Consensus 282 ~~~~~~V~nV~v~n~~~~~t~~GirIKt~~g--~~G~v~nItf~ni~m~nv~~pI~I~q~Y~~~~~~~~~~ts~v~I~nI 359 (443)
T PLN02793 282 SNSWSEVRDITVDGAFLSNTDNGVRIKTWQG--GSGNASKITFQNIFMENVSNPIIIDQYYCDSRKPCANQTSAVKVENI 359 (443)
T ss_pred cCCCCcEEEEEEEccEEeCCCceEEEEEeCC--CCEEEEEEEEEeEEEecCCceEEEEeeecCCCCCCCCCCCCeEEEeE
Confidence 168899999999875 5999998622 236799999999999999999999775321 12468899
Q ss_pred EEeeeEEecC-CccEEEE
Q 047946 243 TFEDIVMNNV-ENPIVID 259 (321)
Q Consensus 243 t~~ni~~~~v-~~~i~i~ 259 (321)
+|+||+-... ..++.+.
T Consensus 360 ~~~nI~Gt~~~~~ai~l~ 377 (443)
T PLN02793 360 SFVHIKGTSATEEAIKFA 377 (443)
T ss_pred EEEEEEEEEcccccEEEE
Confidence 9999888764 3466554
No 14
>PLN03010 polygalacturonase
Probab=99.18 E-value=9.3e-10 Score=106.09 Aligned_cols=122 Identities=16% Similarity=0.236 Sum_probs=95.1
Q ss_pred eeEEEEeecceEEeceeEeCCCC---e-EEEEEceeeEEEEeeEEecCCCC------cccEEEEeEEEcC------CCee
Q 047946 132 TPIRFNFLNDSTITGIKSVDSRY---F-HINILGCYNLKLNDLKITAHADS------SKDILVSEVFCGP------GQGI 195 (321)
Q Consensus 132 ~~i~~~~~~nv~I~~iti~ns~~---~-~i~~~~s~nv~i~nv~I~~~~~~------s~nI~I~n~~~~~------~~GI 195 (321)
..+.|.+++|+.|.|=-.+|... | .+.+..|+|++|+++++.++... |+||+|+++++.. .+||
T Consensus 131 ~wi~f~~v~nv~I~G~G~IDG~G~~ww~~l~~~~~~nv~v~gitl~nsp~~~i~i~~~~nv~i~~i~I~a~~~s~NTDGi 210 (409)
T PLN03010 131 MWISFSTVSGLMIDGSGTIDGRGSSFWEALHISKCDNLTINGITSIDSPKNHISIKTCNYVAISKINILAPETSPNTDGI 210 (409)
T ss_pred ceEEEecccccEEeeceEEeCCCccccceEEEEeecCeEEeeeEEEcCCceEEEEeccccEEEEEEEEeCCCCCCCCCce
Confidence 46888999999999877776533 4 48899999999999999998764 9999999998752 3577
Q ss_pred EEeecCCCCCCCcEEEEEEEeeEEEeccceEEEEeeC-----------CC------------CceeeeCcEEeeeEEecC
Q 047946 196 SVGSLGKGIKDEEVVGLTVRNCTFTCTSNGVRVKTWP-----------DS------------HIGIASNFTFEDIVMNNV 252 (321)
Q Consensus 196 ~iGS~G~~~~~~~v~nI~v~n~~i~~~~~gi~ikt~~-----------g~------------~~g~v~nIt~~ni~~~~v 252 (321)
.+.+ .+||+|+||++.+.+.+|.||+.. ++ ....|+||+|+|++|.+.
T Consensus 211 Di~~---------s~nV~I~n~~I~~gDDcIaiksgs~ni~I~~~~C~~gHGisIGS~g~~~~~~~V~nV~v~n~~i~~t 281 (409)
T PLN03010 211 DISY---------STNINIFDSTIQTGDDCIAINSGSSNINITQINCGPGHGISVGSLGADGANAKVSDVHVTHCTFNQT 281 (409)
T ss_pred eeec---------cceEEEEeeEEecCCCeEEecCCCCcEEEEEEEeECcCCEEEccCCCCCCCCeeEEEEEEeeEEeCC
Confidence 7753 378888888888877777776421 00 013499999999999999
Q ss_pred CccEEEEeee
Q 047946 253 ENPIVIDQLY 262 (321)
Q Consensus 253 ~~~i~i~~~y 262 (321)
.+++.|....
T Consensus 282 ~~GirIKt~~ 291 (409)
T PLN03010 282 TNGARIKTWQ 291 (409)
T ss_pred CcceEEEEec
Confidence 9999998753
No 15
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=99.10 E-value=2e-08 Score=97.01 Aligned_cols=124 Identities=11% Similarity=0.109 Sum_probs=79.4
Q ss_pred EEEEeecceEEeceeEeCCCCeEEEEE-ceeeEEEEeeEEecCC-------------CCcccEEEEeEEEcCC-CeeEEe
Q 047946 134 IRFNFLNDSTITGIKSVDSRYFHINIL-GCYNLKLNDLKITAHA-------------DSSKDILVSEVFCGPG-QGISVG 198 (321)
Q Consensus 134 i~~~~~~nv~I~~iti~ns~~~~i~~~-~s~nv~i~nv~I~~~~-------------~~s~nI~I~n~~~~~~-~GI~iG 198 (321)
+.+..|+|++|++.++.+. ..+|.+. .++|++|+|+.....+ ..-+||+|+||++.+. +|+.|+
T Consensus 208 idi~~s~nV~I~n~~I~~G-DDcIaiksg~~nI~I~n~~c~~ghGisiGSlG~~~~~~~V~nV~v~n~~~~~t~~GiriK 286 (404)
T PLN02188 208 IHIERSSGVYISDSRIGTG-DDCISIGQGNSQVTITRIRCGPGHGISVGSLGRYPNEGDVTGLVVRDCTFTGTTNGIRIK 286 (404)
T ss_pred EeeeCcccEEEEeeEEeCC-CcEEEEccCCccEEEEEEEEcCCCcEEeCCCCCCCcCCcEEEEEEEeeEEECCCcEEEEE
Confidence 4444455555555444332 2344432 4445555555442110 1168999999999875 599999
Q ss_pred ecCCCCCCCcEEEEEEEeeEEEeccceEEEEeeCC---------CCceeeeCcEEeeeEEecCC-ccEEE
Q 047946 199 SLGKGIKDEEVVGLTVRNCTFTCTSNGVRVKTWPD---------SHIGIASNFTFEDIVMNNVE-NPIVI 258 (321)
Q Consensus 199 S~G~~~~~~~v~nI~v~n~~i~~~~~gi~ikt~~g---------~~~g~v~nIt~~ni~~~~v~-~~i~i 258 (321)
+.-..+..+.++||+++|++|.+..++|.|..... .....|+||+|+||+..... .++.+
T Consensus 287 t~~g~~~~G~v~nI~f~ni~m~~v~~pI~i~~~Y~~~~~~~~~~~s~v~I~nIt~~nI~gt~~~~~a~~l 356 (404)
T PLN02188 287 TWANSPGKSAATNMTFENIVMNNVTNPIIIDQKYCPFYSCESKYPSGVTLSDIYFKNIRGTSSSQVAVLL 356 (404)
T ss_pred EecCCCCceEEEEEEEEeEEecCccceEEEEccccCCCCCCcCCCCCcEEEeEEEEEEEEEecCceEEEE
Confidence 86332334689999999999999999998875321 11367899999999987653 35544
No 16
>PLN03003 Probable polygalacturonase At3g15720
Probab=99.09 E-value=3.7e-09 Score=102.81 Aligned_cols=130 Identities=14% Similarity=0.206 Sum_probs=93.5
Q ss_pred CeeEEEEeecceEEeceeEeCCCC---e--------EEEEEceeeEEEEeeEEecCCCC------cccEEEEeEEEcC--
Q 047946 131 PTPIRFNFLNDSTITGIKSVDSRY---F--------HINILGCYNLKLNDLKITAHADS------SKDILVSEVFCGP-- 191 (321)
Q Consensus 131 p~~i~~~~~~nv~I~~iti~ns~~---~--------~i~~~~s~nv~i~nv~I~~~~~~------s~nI~I~n~~~~~-- 191 (321)
...+.|.+++++.|.|=-.+|... | .+++..|+|++|+++++.++... |+||+|+++++..
T Consensus 104 ~~wI~f~~~~~i~I~G~GtIDGqG~~wW~~~~~rP~~l~f~~~~nv~I~gitl~NSp~w~i~i~~c~nV~i~~l~I~ap~ 183 (456)
T PLN03003 104 DQWILFTDIEGLVIEGDGEINGQGSSWWEHKGSRPTALKFRSCNNLRLSGLTHLDSPMAHIHISECNYVTISSLRINAPE 183 (456)
T ss_pred cceEEEEcccceEEeccceEeCCchhhhhcccCCceEEEEEecCCcEEeCeEEecCCcEEEEEeccccEEEEEEEEeCCC
Confidence 347999999999999865565432 3 57899999999999999988764 8999999997742
Q ss_pred ----CCeeEEeecC---------CCCC-----CCcEEEEEEEeeEEEeccceEEEEeeCCC-CceeeeCcEEeeeEEecC
Q 047946 192 ----GQGISVGSLG---------KGIK-----DEEVVGLTVRNCTFTCTSNGVRVKTWPDS-HIGIASNFTFEDIVMNNV 252 (321)
Q Consensus 192 ----~~GI~iGS~G---------~~~~-----~~~v~nI~v~n~~i~~~~~gi~ikt~~g~-~~g~v~nIt~~ni~~~~v 252 (321)
.+||.+.+-- ..++ ..+.+||+|+||++.. .+||.|.+.... ..+.|+||+++|+++.+.
T Consensus 184 ~spNTDGIDi~~S~nV~I~n~~I~tGDDCIaiksgs~NI~I~n~~c~~-GHGISIGSlg~~g~~~~V~NV~v~n~~~~~T 262 (456)
T PLN03003 184 SSPNTDGIDVGASSNVVIQDCIIATGDDCIAINSGTSNIHISGIDCGP-GHGISIGSLGKDGETATVENVCVQNCNFRGT 262 (456)
T ss_pred CCCCCCcEeecCcceEEEEecEEecCCCeEEeCCCCccEEEEeeEEEC-CCCeEEeeccCCCCcceEEEEEEEeeEEECC
Confidence 3466654310 0000 0234677777777764 457777776421 125699999999999999
Q ss_pred CccEEEEee
Q 047946 253 ENPIVIDQL 261 (321)
Q Consensus 253 ~~~i~i~~~ 261 (321)
.+++.|...
T Consensus 263 ~nGvRIKT~ 271 (456)
T PLN03003 263 MNGARIKTW 271 (456)
T ss_pred CcEEEEEEe
Confidence 999999875
No 17
>PLN02155 polygalacturonase
Probab=99.09 E-value=1.7e-08 Score=97.11 Aligned_cols=127 Identities=17% Similarity=0.179 Sum_probs=88.4
Q ss_pred eEEEEeecceEEeceeEeCCCC---e--------------EEEEEceeeEEEEeeEEecCCCC------cccEEEEeEEE
Q 047946 133 PIRFNFLNDSTITGIKSVDSRY---F--------------HINILGCYNLKLNDLKITAHADS------SKDILVSEVFC 189 (321)
Q Consensus 133 ~i~~~~~~nv~I~~iti~ns~~---~--------------~i~~~~s~nv~i~nv~I~~~~~~------s~nI~I~n~~~ 189 (321)
.+.|.+.+++.|.+ -.+|... | .+.+..|++++|+++++.++..+ |+||+|+++++
T Consensus 108 wi~~~~~~~i~i~G-G~iDGqG~~ww~~~~~~~~~~~~p~~i~~~~~~nv~i~gitl~nSp~w~i~~~~~~nv~i~~v~I 186 (394)
T PLN02155 108 WILFNKVNRFSLVG-GTFDARANGFWSCRKSGQNCPPGVRSISFNSAKDVIISGVKSMNSQVSHMTLNGCTNVVVRNVKL 186 (394)
T ss_pred eEEEECcCCCEEEc-cEEecCceeEEEcccCCCCCCCcccceeEEEeeeEEEECeEEEcCCCeEEEEECeeeEEEEEEEE
Confidence 57888888888887 4444321 2 37889999999999999988765 89999999987
Q ss_pred cC------CCeeEEeecCC---------CCC-----CCcEEEEEEEeeEEEeccceEEEEeeCCC-CceeeeCcEEeeeE
Q 047946 190 GP------GQGISVGSLGK---------GIK-----DEEVVGLTVRNCTFTCTSNGVRVKTWPDS-HIGIASNFTFEDIV 248 (321)
Q Consensus 190 ~~------~~GI~iGS~G~---------~~~-----~~~v~nI~v~n~~i~~~~~gi~ikt~~g~-~~g~v~nIt~~ni~ 248 (321)
.. .+||.+.+--. .++ ..+.+||+|+||++.. .+|+.|.+.... ..+.|+||+++|++
T Consensus 187 ~~p~~~~NtDGidi~~s~nV~I~~~~I~~gDDcIaik~gs~nI~I~n~~c~~-GhGisIGS~g~~~~~~~V~nV~v~n~~ 265 (394)
T PLN02155 187 VAPGNSPNTDGFHVQFSTGVTFTGSTVQTGDDCVAIGPGTRNFLITKLACGP-GHGVSIGSLAKELNEDGVENVTVSSSV 265 (394)
T ss_pred ECCCCCCCCCccccccceeEEEEeeEEecCCceEEcCCCCceEEEEEEEEEC-CceEEeccccccCCCCcEEEEEEEeeE
Confidence 42 24665532100 000 1234677777777764 457777775311 13779999999999
Q ss_pred EecCCccEEEEee
Q 047946 249 MNNVENPIVIDQL 261 (321)
Q Consensus 249 ~~~v~~~i~i~~~ 261 (321)
+.+..+++.|...
T Consensus 266 ~~~t~~GirIKT~ 278 (394)
T PLN02155 266 FTGSQNGVRIKSW 278 (394)
T ss_pred EeCCCcEEEEEEe
Confidence 9999999999764
No 18
>PLN02218 polygalacturonase ADPG
Probab=99.09 E-value=2.7e-09 Score=103.74 Aligned_cols=149 Identities=15% Similarity=0.203 Sum_probs=99.9
Q ss_pred eeEEEEeecceEEece--eEeCCC--------------------CeEEEEEceeeEEEEeeEEecCCCC------cccEE
Q 047946 132 TPIRFNFLNDSTITGI--KSVDSR--------------------YFHINILGCYNLKLNDLKITAHADS------SKDIL 183 (321)
Q Consensus 132 ~~i~~~~~~nv~I~~i--ti~ns~--------------------~~~i~~~~s~nv~i~nv~I~~~~~~------s~nI~ 183 (321)
..+.+.+.+|+.|+|= -.+|.. ...+.+..|+|++|+++++.++..+ |+||+
T Consensus 148 ~wi~~~~~~ni~I~G~~~GtIDG~G~~WW~~~~~~~~~~~~~~rP~~i~f~~~~nv~I~gitl~nSp~w~i~~~~~~nV~ 227 (431)
T PLN02218 148 KWIMFDGVNNLSVDGGSTGVVDGNGETWWQNSCKRNKAKPCTKAPTALTFYNSKSLIVKNLRVRNAQQIQISIEKCSNVQ 227 (431)
T ss_pred cCEEEecCcEEEEECCCCcEEeCCchhhhhcccccCCcCccCcCCEEEEEEccccEEEeCeEEEcCCCEEEEEEceeeEE
Confidence 4588889999999883 222221 1347889999999999999998765 99999
Q ss_pred EEeEEEc------CCCeeEEeecCC---------CCC-----CCcEEEEEEEeeEEEeccceEEEEeeCCC-CceeeeCc
Q 047946 184 VSEVFCG------PGQGISVGSLGK---------GIK-----DEEVVGLTVRNCTFTCTSNGVRVKTWPDS-HIGIASNF 242 (321)
Q Consensus 184 I~n~~~~------~~~GI~iGS~G~---------~~~-----~~~v~nI~v~n~~i~~~~~gi~ikt~~g~-~~g~v~nI 242 (321)
|+++++. +.+||.+.+--. .++ ..+.+||+|+||++.. .+|+.|.+.... ..+.|+||
T Consensus 228 i~~v~I~a~~~spNTDGIdi~ss~nV~I~n~~I~tGDDcIaIksgs~nI~I~n~~c~~-GHGisIGS~g~~~~~~~V~nV 306 (431)
T PLN02218 228 VSNVVVTAPADSPNTDGIHITNTQNIRVSNSIIGTGDDCISIESGSQNVQINDITCGP-GHGISIGSLGDDNSKAFVSGV 306 (431)
T ss_pred EEEEEEeCCCCCCCCCcEeecccceEEEEccEEecCCceEEecCCCceEEEEeEEEEC-CCCEEECcCCCCCCCceEEEE
Confidence 9999864 234666643200 000 0124566666666643 356666665321 12679999
Q ss_pred EEeeeEEecCCccEEEEeeecCCCCCCCCCCCCC-CCEEEEeeEEEecC
Q 047946 243 TFEDIVMNNVENPIVIDQLYCPYNKCNIKPKDSM-PNIEIGNRNLVYNG 290 (321)
Q Consensus 243 t~~ni~~~~v~~~i~i~~~y~~~~~~~~~ps~~~-~ni~~~nI~i~~~~ 290 (321)
+++|+++.+..+++.|...-.. .+. +||+|+||.++...
T Consensus 307 ~v~n~~~~~t~nGvRIKT~~Gg---------~G~v~nI~f~ni~m~~V~ 346 (431)
T PLN02218 307 TVDGAKLSGTDNGVRIKTYQGG---------SGTASNIIFQNIQMENVK 346 (431)
T ss_pred EEEccEEecCCcceEEeecCCC---------CeEEEEEEEEeEEEEccc
Confidence 9999999999999999875221 223 78888888777643
No 19
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=99.00 E-value=1.4e-08 Score=95.92 Aligned_cols=158 Identities=21% Similarity=0.219 Sum_probs=114.1
Q ss_pred eEEEEeecceEEeceeEeCCCC----eEEEEEceeeEEEEeeEEec----------------------CCCC--------
Q 047946 133 PIRFNFLNDSTITGIKSVDSRY----FHINILGCYNLKLNDLKITA----------------------HADS-------- 178 (321)
Q Consensus 133 ~i~~~~~~nv~I~~iti~ns~~----~~i~~~~s~nv~i~nv~I~~----------------------~~~~-------- 178 (321)
.+.+.+|+|+.|+++++.+++. .+|.+..|+||+|+|+.|.+ ....
T Consensus 117 ~~~~~~~~nv~i~~i~I~~~~~~~NtDGid~~~s~nv~I~n~~i~~gDD~Iaiks~~~ni~v~n~~~~~ghGisiGS~~~ 196 (326)
T PF00295_consen 117 HIHINDCDNVTISNITINNPANSPNTDGIDIDSSKNVTIENCFIDNGDDCIAIKSGSGNILVENCTCSGGHGISIGSEGS 196 (326)
T ss_dssp SEEEESEEEEEEESEEEEEGGGCTS--SEEEESEEEEEEESEEEESSSESEEESSEECEEEEESEEEESSSEEEEEEESS
T ss_pred EEEEEccCCeEEcceEEEecCCCCCcceEEEEeeeEEEEEEeecccccCcccccccccceEEEeEEEeccccceeeeccC
Confidence 3667778888888888877543 46788888887777777652 0110
Q ss_pred ------cccEEEEeEEEcCC-CeeEEeecCCCCCCCcEEEEEEEeeEEEeccceEEEEeeCCC--------CceeeeCcE
Q 047946 179 ------SKDILVSEVFCGPG-QGISVGSLGKGIKDEEVVGLTVRNCTFTCTSNGVRVKTWPDS--------HIGIASNFT 243 (321)
Q Consensus 179 ------s~nI~I~n~~~~~~-~GI~iGS~G~~~~~~~v~nI~v~n~~i~~~~~gi~ikt~~g~--------~~g~v~nIt 243 (321)
-+||+++||++.+. +|+.|++.- +..+.++||+++|++|.+..+++.|...... ....++||+
T Consensus 197 ~~~~~~i~nV~~~n~~i~~t~~gi~iKt~~--~~~G~v~nI~f~ni~~~~v~~pi~i~~~y~~~~~~~~~~~~~~i~nI~ 274 (326)
T PF00295_consen 197 GGSQNDIRNVTFENCTIINTDNGIRIKTWP--GGGGYVSNITFENITMENVKYPIFIDQDYRDGGPCGKPPSGVSISNIT 274 (326)
T ss_dssp SSE--EEEEEEEEEEEEESESEEEEEEEET--TTSEEEEEEEEEEEEEEEESEEEEEEEEECTTEESSCSSSSSEEEEEE
T ss_pred CccccEEEeEEEEEEEeeccceEEEEEEec--ccceEEeceEEEEEEecCCceEEEEEeccccccccCcccCCceEEEEE
Confidence 37999999999874 599999852 2357899999999999999999988653211 125799999
Q ss_pred EeeeEEecCC-ccEEEEeeecCCCCCCCCCCCCCCCEEEEeeEEEecCcccccCCCCCcceeeeeeecc
Q 047946 244 FEDIVMNNVE-NPIVIDQLYCPYNKCNIKPKDSMPNIEIGNRNLVYNGVNVKVEGPETTSLCSNVKPTL 311 (321)
Q Consensus 244 ~~ni~~~~v~-~~i~i~~~y~~~~~~~~~ps~~~~ni~~~nI~i~~~~~~~~~~~~~~~~~C~n~~g~~ 311 (321)
|+||+..... .++.+... +..+| +||+|+||+|+. + . ..+.|+|++...
T Consensus 275 ~~nitg~~~~~~~i~i~~~--~~~~~--------~ni~f~nv~i~~-g-~-------~~~~c~nv~~~~ 324 (326)
T PF00295_consen 275 FRNITGTSAGSSAISIDCS--PGSPC--------SNITFENVNITG-G-K-------KPAQCKNVPSGI 324 (326)
T ss_dssp EEEEEEEESTSEEEEEE-B--TTSSE--------EEEEEEEEEEES-S-B-------SESEEBSCCTT-
T ss_pred EEeeEEEeccceEEEEEEC--CcCcE--------EeEEEEeEEEEc-C-C-------cCeEEECCCCCC
Confidence 9999997665 57776531 11112 899999999999 4 2 459999997643
No 20
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=98.40 E-value=2.6e-06 Score=84.48 Aligned_cols=126 Identities=20% Similarity=0.210 Sum_probs=88.5
Q ss_pred CCeEEEEEceeeEEEEeeEEecCCCC------cccEEEEeEEE--------------------------cC-CCeeEEee
Q 047946 153 RYFHINILGCYNLKLNDLKITAHADS------SKDILVSEVFC--------------------------GP-GQGISVGS 199 (321)
Q Consensus 153 ~~~~i~~~~s~nv~i~nv~I~~~~~~------s~nI~I~n~~~--------------------------~~-~~GI~iGS 199 (321)
+..++.+..|.||.+.+++|.++.-. |+|++++|+++ .. ++.|++.|
T Consensus 237 rp~~~~l~~c~NV~~~g~~i~ns~~~~~h~~~~~nl~~~nl~I~~~~~~NtDG~d~~sc~NvlI~~~~fdtgDD~I~iks 316 (542)
T COG5434 237 RPRTVVLKGCRNVLLEGLNIKNSPLWTVHPVDCDNLTFRNLTIDANRFDNTDGFDPGSCSNVLIEGCRFDTGDDCIAIKS 316 (542)
T ss_pred CCceEEEeccceEEEeeeEecCCCcEEEeeecccCceecceEEECCCCCCCCccccccceeEEEeccEEecCCceEEeec
Confidence 45678899999999999999998754 66666666643 22 34677766
Q ss_pred cCCCC---CCCcEEEEEEEeeEEEeccceEEEEeeCCCCceeeeCcEEeeeEEecCCccEEEEeeecCCCCCCCCCCCCC
Q 047946 200 LGKGI---KDEEVVGLTVRNCTFTCTSNGVRVKTWPDSHIGIASNFTFEDIVMNNVENPIVIDQLYCPYNKCNIKPKDSM 276 (321)
Q Consensus 200 ~G~~~---~~~~v~nI~v~n~~i~~~~~gi~ikt~~g~~~g~v~nIt~~ni~~~~v~~~i~i~~~y~~~~~~~~~ps~~~ 276 (321)
-..-. .....+||+|+||.|....-++.+.+|. +|.++||++||+.|.+..+++.|....... ..+
T Consensus 317 g~~~~~~~~~~~~~~i~i~~c~~~~ghG~~v~Gse~---~ggv~ni~ved~~~~~~d~GLRikt~~~~g--------G~v 385 (542)
T COG5434 317 GAGLDGKKGYGPSRNIVIRNCYFSSGHGGLVLGSEM---GGGVQNITVEDCVMDNTDRGLRIKTNDGRG--------GGV 385 (542)
T ss_pred ccCCcccccccccccEEEecceecccccceEeeeec---CCceeEEEEEeeeeccCcceeeeeeecccc--------eeE
Confidence 32111 1235688888888888777677787887 477999999999999988999997753321 122
Q ss_pred CCEEEEeeEEEec
Q 047946 277 PNIEIGNRNLVYN 289 (321)
Q Consensus 277 ~ni~~~nI~i~~~ 289 (321)
+||+|+++.+...
T Consensus 386 ~nI~~~~~~~~nv 398 (542)
T COG5434 386 RNIVFEDNKMRNV 398 (542)
T ss_pred EEEEEecccccCc
Confidence 6777777655443
No 21
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=98.34 E-value=3.6e-05 Score=72.30 Aligned_cols=156 Identities=15% Similarity=0.165 Sum_probs=76.3
Q ss_pred eEEEEeecceEEeceeEe-------CCCCeEEEEEceeeEEEEeeEEecCCCC------cccEEEEeEEEcCCC-eeEE-
Q 047946 133 PIRFNFLNDSTITGIKSV-------DSRYFHINILGCYNLKLNDLKITAHADS------SKDILVSEVFCGPGQ-GISV- 197 (321)
Q Consensus 133 ~i~~~~~~nv~I~~iti~-------ns~~~~i~~~~s~nv~i~nv~I~~~~~~------s~nI~I~n~~~~~~~-GI~i- 197 (321)
.+.+..|++++|+++++. ....++|.+..|++++|+++++....+. +++++|+++++...+ ||-+
T Consensus 79 GI~v~~s~~i~I~n~~i~~~~~~~~~~~~~GI~~~~s~~v~I~~n~i~g~~d~GIyv~~s~~~~v~nN~~~~n~~GI~i~ 158 (314)
T TIGR03805 79 GVKVKGSDGIIIRRLRVEWTGGPKSSNGAYGIYPVESTNVLVEDSYVRGASDAGIYVGQSQNIVVRNNVAEENVAGIEIE 158 (314)
T ss_pred eEEEeCCCCEEEEeeEEEeccCccccCCcceEEEeccCCEEEECCEEECCCcccEEECCCCCeEEECCEEccCcceEEEE
Confidence 355556666666666664 1234566666666666666666665442 555555555554322 4443
Q ss_pred ---------------------eecCCCCCCCcEEEEEEEeeEEEecc-ceEE-----EEeeCCCCceee----eCcEEee
Q 047946 198 ---------------------GSLGKGIKDEEVVGLTVRNCTFTCTS-NGVR-----VKTWPDSHIGIA----SNFTFED 246 (321)
Q Consensus 198 ---------------------GS~G~~~~~~~v~nI~v~n~~i~~~~-~gi~-----ikt~~g~~~g~v----~nIt~~n 246 (321)
-++...+ ...-++++|+++.+.+.. ..+. +...+.+ .|.+ ++++|+|
T Consensus 159 ~S~~~~v~~N~~~~N~~Gi~v~~~p~~~-~~~s~~~~v~~N~i~~n~~~n~~~~gn~v~~~~~g-~Gi~i~~~~~v~I~~ 236 (314)
T TIGR03805 159 NSQNADVYNNIATNNTGGILVFDLPGLP-QPGGSNVRVFDNIIFDNNTPNFAPAGSIVASVPAG-TGVVVMANRDVEIFG 236 (314)
T ss_pred ecCCcEEECCEEeccceeEEEeecCCCC-cCCccceEEECCEEECCCCCCCcccCCceecCCCC-cEEEEEcccceEEEC
Confidence 2221100 012345555555555431 1111 1111212 1433 7788888
Q ss_pred eEEecCCc-cEEEEeeecCCC--CCCCCCC--CCCCCEEEEeeEEEecCc
Q 047946 247 IVMNNVEN-PIVIDQLYCPYN--KCNIKPK--DSMPNIEIGNRNLVYNGV 291 (321)
Q Consensus 247 i~~~~v~~-~i~i~~~y~~~~--~~~~~ps--~~~~ni~~~nI~i~~~~~ 291 (321)
.++.+... ++.+.. |.... .-+..+. +-.++|.+.|=.+...|.
T Consensus 237 N~i~~n~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~v~i~~N~~~~~g~ 285 (314)
T TIGR03805 237 NVISNNDTANVLISS-YHSTGLPDQPPDDGFDPYPRNISIHDNTFSDGGT 285 (314)
T ss_pred CEEeCCcceeEEEEe-cccccCCCCCcCCCccCCCcceEEEccEeecCCC
Confidence 88877664 555543 32211 0000000 111788888777777654
No 22
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional
Probab=98.24 E-value=3.4e-05 Score=69.92 Aligned_cols=199 Identities=20% Similarity=0.282 Sum_probs=102.2
Q ss_pred CCceEEeeecCccCCCCcchHHHHHHHHHHHhhcCCCccEEEecCce-E-EEe-eeeeecccCCceEEEEcCeEEE----
Q 047946 23 TNRVLNVKDFGAVADGITDDSKAFDTSWREAWNWDGIKGTVLVPPGK-Y-LVS-FAEFEGPCKASISFQLQGLLDL---- 95 (321)
Q Consensus 23 ~~~~~~v~dfGA~~dg~tddt~Aiq~Ai~~ac~~~g~g~~v~vP~G~-y-~~~-~l~l~g~~~s~v~l~i~G~l~~---- 95 (321)
....+|+.||-. .|=-++|.+|+.+ +.+|++|+|- - .+. .+.+. .+.||++.|.+..
T Consensus 31 ~~~~vni~dy~~-----~dwiasfkqaf~e-------~qtvvvpagl~cenint~ifip----~gktl~v~g~l~gngrg 94 (464)
T PRK10123 31 ARQSVNINDYNP-----HDWIASFKQAFSE-------GQTVVVPAGLVCDNINTGIFIP----PGKTLHILGSLRGNGRG 94 (464)
T ss_pred CCceeehhhcCc-----ccHHHHHHHHhcc-------CcEEEecCccEecccccceEeC----CCCeEEEEEEeecCCce
Confidence 456899999964 4667889999854 4699999994 1 233 35554 6778888887765
Q ss_pred -EEEcCCeEEec---c-----EEEecccc------ccCCccCC--CCCCCCCCeeEEEEeecceEEeceeEeCCCC----
Q 047946 96 -FSIDTSLSLAK---G-----TFHGQGET------AWPLNQCH--KNSDCQLPTPIRFNFLNDSTITGIKSVDSRY---- 154 (321)
Q Consensus 96 -i~~~~ni~I~G---G-----~idG~G~~------~w~~~~~~--~~~~~~rp~~i~~~~~~nv~I~~iti~ns~~---- 154 (321)
|...++-.+.| | ++|=.|.. ....+.+- --.+++.|+. -+|++|+++++-.+-+
T Consensus 95 rfvlqdg~qv~ge~~g~~hnitldvrgsdc~ikgiamsgfgpvtqiyiggk~prv-----mrnl~id~itv~~anyailr 169 (464)
T PRK10123 95 RFVLQDGSQVTGEEGGSMHNITLDVRGSDCTIKGLAMSGFGPVTQIYIGGKNKRV-----MRNLTIDNLTVSHANYAILR 169 (464)
T ss_pred eEEEecCCEeecCCCceeeeEEEeeccCceEEeeeeecccCceeEEEEcCCCchh-----hhccEEccEEEeeccHHHHh
Confidence 22222111111 1 11212110 00000000 0001113433 2577888888876532
Q ss_pred --eEEEEEceeeEEEEeeEEecCCCC---------cccE-----EEEeEEEcCC---CeeEEeecCC-----CCCCCcEE
Q 047946 155 --FHINILGCYNLKLNDLKITAHADS---------SKDI-----LVSEVFCGPG---QGISVGSLGK-----GIKDEEVV 210 (321)
Q Consensus 155 --~~i~~~~s~nv~i~nv~I~~~~~~---------s~nI-----~I~n~~~~~~---~GI~iGS~G~-----~~~~~~v~ 210 (321)
+|-. -+.++|.++++..-..+ -+|| .|+++.|..| .||.||-.|. |++...++
T Consensus 170 qgfhnq---~dgaritn~rfs~lqgdaiewnvaindr~ilisdhvie~inctngkinwgigiglagstydn~ype~q~vk 246 (464)
T PRK10123 170 QGFHNQ---IIGANITNCKFSDLQGDAIEWNVAINDRDILISDHVIERINCTNGKINWGIGIGLAGSTYDNNYPEDQAVK 246 (464)
T ss_pred hhhhhc---cccceeeccccccccCceEEEEEEecccceeeehheheeecccCCcccceeeeeeccccccCCCchhhhhh
Confidence 2221 22334444444332111 3344 4456667664 4888876554 33345688
Q ss_pred EEEEEeeEEEeccceEEEEeeCCCCceeeeCcEEeeeE
Q 047946 211 GLTVRNCTFTCTSNGVRVKTWPDSHIGIASNFTFEDIV 248 (321)
Q Consensus 211 nI~v~n~~i~~~~~gi~ikt~~g~~~g~v~nIt~~ni~ 248 (321)
|..|-|++=.+++.=+.+.. +.-=.|+||.-+||+
T Consensus 247 nfvvanitgs~crqlvhven---gkhfvirnvkaknit 281 (464)
T PRK10123 247 NFVVANITGSDCRQLIHVEN---GKHFVIRNIKAKNIT 281 (464)
T ss_pred hEEEEeccCcChhheEEecC---CcEEEEEeeeccccC
Confidence 88888877666654444431 111345555555555
No 23
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=98.16 E-value=1.1e-05 Score=72.22 Aligned_cols=37 Identities=19% Similarity=0.421 Sum_probs=23.1
Q ss_pred CCeeEEEEeecceEEeceeEeCCCC--eEEEEEceeeEEEEeeEEe
Q 047946 130 LPTPIRFNFLNDSTITGIKSVDSRY--FHINILGCYNLKLNDLKIT 173 (321)
Q Consensus 130 rp~~i~~~~~~nv~I~~iti~ns~~--~~i~~~~s~nv~i~nv~I~ 173 (321)
.|.+ |++|+++.++++++-|++- |. |++++++|+.+.
T Consensus 90 apK~--fR~~~~i~L~nv~~~~A~Et~W~-----c~~i~l~nv~~~ 128 (277)
T PF12541_consen 90 APKM--FRECSNITLENVDIPDADETLWN-----CRGIKLKNVQAN 128 (277)
T ss_pred CchH--hhcccCcEEEeeEeCCCcccCEE-----eCCeEEEeEEEe
Confidence 4543 4477777777777777653 44 556666666553
No 24
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=98.06 E-value=2.4e-05 Score=70.06 Aligned_cols=111 Identities=13% Similarity=0.154 Sum_probs=61.5
Q ss_pred eecceEEeceeEeCCCCeEEEEEceeeEEEEeeEEecCCCC---cccEEEEeEEEcCC------CeeEE---eecCCCCC
Q 047946 138 FLNDSTITGIKSVDSRYFHINILGCYNLKLNDLKITAHADS---SKDILVSEVFCGPG------QGISV---GSLGKGIK 205 (321)
Q Consensus 138 ~~~nv~I~~iti~ns~~~~i~~~~s~nv~i~nv~I~~~~~~---s~nI~I~n~~~~~~------~GI~i---GS~G~~~~ 205 (321)
..+|+.+++..+.-+.. +..|++++++|+++.....- |++|.++|+...+. .-|.+ -+.|+| .
T Consensus 77 Ys~~i~m~d~~i~apK~----fR~~~~i~L~nv~~~~A~Et~W~c~~i~l~nv~~~gdYf~m~s~ni~id~l~~~GnY-~ 151 (277)
T PF12541_consen 77 YSNNITMKDSVIQAPKM----FRECSNITLENVDIPDADETLWNCRGIKLKNVQANGDYFFMNSENIYIDNLVLDGNY-S 151 (277)
T ss_pred EeCCEEEEeeeccCchH----hhcccCcEEEeeEeCCCcccCEEeCCeEEEeEEEeceEeeeeccceEEeceEEeCCE-E
Confidence 34566666666555543 45678888888888544332 77777777776321 11221 223555 2
Q ss_pred CCcEEEEEEEeeEEEe------ccceEEEEee-CCCC-ceeeeCcEEeeeEEecCC
Q 047946 206 DEEVVGLTVRNCTFTC------TSNGVRVKTW-PDSH-IGIASNFTFEDIVMNNVE 253 (321)
Q Consensus 206 ~~~v~nI~v~n~~i~~------~~~gi~ikt~-~g~~-~g~v~nIt~~ni~~~~v~ 253 (321)
..+++||.|+|+++.. +.|-.--.+. .|.- +..-+|+++.|++++..+
T Consensus 152 Fq~~kNvei~ns~l~sKDAFWn~eNVtVyDS~i~GEYLgW~SkNltliNC~I~g~Q 207 (277)
T PF12541_consen 152 FQYCKNVEIHNSKLDSKDAFWNCENVTVYDSVINGEYLGWNSKNLTLINCTIEGTQ 207 (277)
T ss_pred eeceeeEEEEccEEecccccccCCceEEEcceEeeeEEEEEcCCeEEEEeEEeccC
Confidence 4677788888877663 2221110111 1110 245688888888887643
No 25
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=98.01 E-value=0.00019 Score=65.55 Aligned_cols=89 Identities=15% Similarity=0.096 Sum_probs=68.4
Q ss_pred EEEEeecceEEeceeEeCCC-----CeEEEE-EceeeEEEEeeEEecCC--------CC-------cccEEEEeEEEcCC
Q 047946 134 IRFNFLNDSTITGIKSVDSR-----YFHINI-LGCYNLKLNDLKITAHA--------DS-------SKDILVSEVFCGPG 192 (321)
Q Consensus 134 i~~~~~~nv~I~~iti~ns~-----~~~i~~-~~s~nv~i~nv~I~~~~--------~~-------s~nI~I~n~~~~~~ 192 (321)
+.++..+|+.|+|+++...+ ...|.+ ....|++|+++++.... |. +.+|+|+++++...
T Consensus 119 l~i~~a~NVIirNltf~~~~~~d~~~D~Isi~~~~~nIWIDH~tf~~~s~~~~~~h~DGl~Dik~~AnyITiS~n~fhdh 198 (345)
T COG3866 119 LKIRDAGNVIIRNLTFEGFYQGDPNYDAISIYDDGHNIWIDHNTFSGGSYNASGSHGDGLVDIKKDANYITISYNKFHDH 198 (345)
T ss_pred EEEEeCCcEEEEeeEEEeeccCCCCCCcEEeccCCeEEEEEeeEeccccccccccCCCccEEeccCCcEEEEEeeeeecC
Confidence 56667889999999999887 456888 78999999999999832 22 89999999999854
Q ss_pred C-eeEEeecCCCCCCCcEEEEEEEeeEEEec
Q 047946 193 Q-GISVGSLGKGIKDEEVVGLTVRNCTFTCT 222 (321)
Q Consensus 193 ~-GI~iGS~G~~~~~~~v~nI~v~n~~i~~~ 222 (321)
+ ++-+|+--....+.+-.+|++.+|.|.+.
T Consensus 199 ~Kssl~G~sD~~~~~~~~~kvT~hhNyFkn~ 229 (345)
T COG3866 199 DKSSLLGSSDSSNYDDGKYKVTIHHNYFKNL 229 (345)
T ss_pred CeeeeeccCCcccccCCceeEEEeccccccc
Confidence 3 67777643222234567899999999985
No 26
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=97.95 E-value=0.00046 Score=62.27 Aligned_cols=173 Identities=14% Similarity=0.161 Sum_probs=101.2
Q ss_pred chHHHHHHHHHHHhhcCCCccEEEecCceEEEe-----eeeeecccCCceEEEEcCeEEEEEEcCCeEEec-c---EEEe
Q 047946 41 DDSKAFDTSWREAWNWDGIKGTVLVPPGKYLVS-----FAEFEGPCKASISFQLQGLLDLFSIDTSLSLAK-G---TFHG 111 (321)
Q Consensus 41 ddt~Aiq~Ai~~ac~~~g~g~~v~vP~G~y~~~-----~l~l~g~~~s~v~l~i~G~l~~i~~~~ni~I~G-G---~idG 111 (321)
---+-|++|++.|. . +.+|++.+|+|.-. |+.++ +.++|+-+..-+.. .++.+.| + +|+|
T Consensus 13 ~P~~Ti~~A~~~a~-~---g~~i~l~~GtY~~~~ge~fPi~i~----~gVtl~G~~~~kG~---~~il~~g~~~~~~I~g 81 (246)
T PF07602_consen 13 APFKTITKALQAAQ-P---GDTIQLAPGTYSEATGETFPIIIK----PGVTLIGNESNKGQ---IDILITGGGTGPTISG 81 (246)
T ss_pred cCHHHHHHHHHhCC-C---CCEEEECCceeccccCCcccEEec----CCeEEeecccCCCc---ceEEecCCceEEeEec
Confidence 34467899985432 2 56999999999764 46676 78888765311100 0233333 1 3455
Q ss_pred ccccccCCccCCCCCCCCCCeeEEEEeecceEEeceeEeCCCCeEEEEEceeeEEEEeeEEecCCCCcccEEEEeEEEcC
Q 047946 112 QGETAWPLNQCHKNSDCQLPTPIRFNFLNDSTITGIKSVDSRYFHINILGCYNLKLNDLKITAHADSSKDILVSEVFCGP 191 (321)
Q Consensus 112 ~G~~~w~~~~~~~~~~~~rp~~i~~~~~~nv~I~~iti~ns~~~~i~~~~s~nv~i~nv~I~~~~~~s~nI~I~n~~~~~ 191 (321)
.+..- .-+.+.+....+..|+++++.|+-. .+-..+.|. +.+.+|+||++.+
T Consensus 82 ~~~~~-------------~~qn~tI~~~~~~~i~GvtItN~n~----------~~g~Gi~Ie-----ss~~tI~Nntf~~ 133 (246)
T PF07602_consen 82 GGPDL-------------SGQNVTIILANNATISGVTITNPNI----------ARGTGIWIE-----SSSPTIANNTFTN 133 (246)
T ss_pred cCccc-------------cceeEEEEecCCCEEEEEEEEcCCC----------CcceEEEEe-----cCCcEEEeeEEEC
Confidence 54210 0134566667788999999988811 011222333 2366677777664
Q ss_pred --CCeeEEeecCCCCCCCcEEEEEEEeeEEEeccceEEEEeeCCCCceeeeCcEEeeeEEecCCccEEEEe
Q 047946 192 --GQGISVGSLGKGIKDEEVVGLTVRNCTFTCTSNGVRVKTWPDSHIGIASNFTFEDIVMNNVENPIVIDQ 260 (321)
Q Consensus 192 --~~GI~iGS~G~~~~~~~v~nI~v~n~~i~~~~~gi~ikt~~g~~~g~v~nIt~~ni~~~~v~~~i~i~~ 260 (321)
.+||.+-... ....+.++.|++..+.....|+.+..... + +. ..++|..+++-..+|.+..
T Consensus 134 ~~~~GI~v~g~~---~~~~i~~~vI~GN~~~~~~~Gi~i~~~~~---~-~~-n~I~NN~I~~N~~Gi~~~~ 196 (246)
T PF07602_consen 134 NGREGIFVTGTS---ANPGINGNVISGNSIYFNKTGISISDNAA---P-VE-NKIENNIIENNNIGIVAIG 196 (246)
T ss_pred CccccEEEEeee---cCCcccceEeecceEEecCcCeEEEcccC---C-cc-ceeeccEEEeCCcCeEeec
Confidence 3477663211 13567888899999999888998875542 2 22 2446666665444776543
No 27
>PLN02682 pectinesterase family protein
Probab=97.93 E-value=0.0022 Score=61.18 Aligned_cols=132 Identities=11% Similarity=0.023 Sum_probs=75.8
Q ss_pred cchHHHHHHHHHHHhhcCCCccEEEecCceEEEeeeeeecccCCceEEEEcCeEEEEEEcCCeEEec----cEEEecccc
Q 047946 40 TDDSKAFDTSWREAWNWDGIKGTVLVPPGKYLVSFAEFEGPCKASISFQLQGLLDLFSIDTSLSLAK----GTFHGQGET 115 (321)
Q Consensus 40 tddt~Aiq~Ai~~ac~~~g~g~~v~vP~G~y~~~~l~l~g~~~s~v~l~i~G~l~~i~~~~ni~I~G----G~idG~G~~ 115 (321)
.-|-.-||+||+++-......-+|+|.+|+|.- .+.+. ..|.+++|+.+|.= ...|+. +.....|..
T Consensus 79 sGdf~TIQ~AIdavP~~~~~r~vI~Ik~G~Y~E-kV~Ip-~~k~~Itl~G~g~~-------~TiIt~~~~a~~~~~~g~~ 149 (369)
T PLN02682 79 AGDFTTIQAAIDSLPVINLVRVVIKVNAGTYRE-KVNIP-PLKAYITLEGAGAD-------KTIIQWGDTADTPGPGGRP 149 (369)
T ss_pred CCCccCHHHHHhhccccCCceEEEEEeCceeeE-EEEEe-ccCceEEEEecCCC-------ccEEEeccccCccCCCCCc
Confidence 346778999996543222103578999999973 44542 01267888776520 111111 110001111
Q ss_pred ccCCccCCCCCCCCCCeeEEEEeecceEEeceeEeCCCCe---------EEEE-EceeeEEEEeeEEecCCCC----ccc
Q 047946 116 AWPLNQCHKNSDCQLPTPIRFNFLNDSTITGIKSVDSRYF---------HINI-LGCYNLKLNDLKITAHADS----SKD 181 (321)
Q Consensus 116 ~w~~~~~~~~~~~~rp~~i~~~~~~nv~I~~iti~ns~~~---------~i~~-~~s~nv~i~nv~I~~~~~~----s~n 181 (321)
| ............+++..+||++.|+..+ .+.+ ...+...+.+|++.+..|- ...
T Consensus 150 ~-----------gT~~SAT~~v~a~~F~a~nlTf~Nt~~~~~~g~~g~QAVAL~v~gDr~~fy~C~f~G~QDTLy~~~gR 218 (369)
T PLN02682 150 L-----------GTYGSATFAVNSPYFIAKNITFKNTAPVPPPGALGKQAVALRISADTAAFYGCKFLGAQDTLYDHLGR 218 (369)
T ss_pred c-----------ccccceEEEEECCCeEEEeeEEEcccccCCCCCCcccEEEEEecCCcEEEEcceEeccccceEECCCC
Confidence 0 0111233445678999999999997521 2222 2478899999999998764 345
Q ss_pred EEEEeEEEcC
Q 047946 182 ILVSEVFCGP 191 (321)
Q Consensus 182 I~I~n~~~~~ 191 (321)
-.++||++.+
T Consensus 219 qyf~~C~IeG 228 (369)
T PLN02682 219 HYFKDCYIEG 228 (369)
T ss_pred EEEEeeEEcc
Confidence 6677777664
No 28
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of dextranase (3.2.1.11 from EC) and isopullulanase (3.2.1.57 from EC) which are all members of glycoside hydrolase family 49 (GH49 from CAZY). Dextranase hydrolyses alpha-1,6-glycosidic bonds in dextran polymers.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1X0C_A 1WMR_A 2Z8G_B 1OGM_X 1OGO_X.
Probab=97.92 E-value=0.0016 Score=63.99 Aligned_cols=190 Identities=19% Similarity=0.311 Sum_probs=95.2
Q ss_pred ccEEEecCceEEEeeeeeecccCCceEEEEcCeEEE--EEEc-C----CeEEecc-EEEecccc-ccCCccCCCC--CCC
Q 047946 60 KGTVLVPPGKYLVSFAEFEGPCKASISFQLQGLLDL--FSID-T----SLSLAKG-TFHGQGET-AWPLNQCHKN--SDC 128 (321)
Q Consensus 60 g~~v~vP~G~y~~~~l~l~g~~~s~v~l~i~G~l~~--i~~~-~----ni~I~GG-~idG~G~~-~w~~~~~~~~--~~~ 128 (321)
..+|||.+|.|.-+.+.+.+-+ +++.+...|.|.. .... + ..+..|+ -.+....+ ||... .... ..+
T Consensus 256 ~~~VYlApGAyVkGAf~~~~~~-~nv~i~G~GVLSGe~Yvy~A~~~e~y~~~s~A~~~~~~~lkm~~~~~-~~g~q~~~~ 333 (582)
T PF03718_consen 256 TKWVYLAPGAYVKGAFEYTDTQ-QNVKITGRGVLSGEQYVYEADTEESYLHLSGAVKCHRESLKMLWHIS-ANGGQTLTC 333 (582)
T ss_dssp --EEEE-TTEEEES-EEE---S-SEEEEESSSEEE-TTS-TTBBCCCTTSB-SSC---TTTB--SEEECS--SSSEEEEE
T ss_pred ccEEEEcCCcEEEEEEEEccCC-ceEEEEeeEEEcCcceeEeccCCCCccccccccccchhhhhhhhhhc-cCCcceEEE
Confidence 3599999999999988766322 5666655678775 1111 0 1111110 11111111 11110 0000 000
Q ss_pred C------CC-eeEEEE-eec---ceEEeceeEeCCCCe---EEEEEceeeEEEEeeEEecCCCC----cccEEEEeEEEc
Q 047946 129 Q------LP-TPIRFN-FLN---DSTITGIKSVDSRYF---HINILGCYNLKLNDLKITAHADS----SKDILVSEVFCG 190 (321)
Q Consensus 129 ~------rp-~~i~~~-~~~---nv~I~~iti~ns~~~---~i~~~~s~nv~i~nv~I~~~~~~----s~nI~I~n~~~~ 190 (321)
. .| +.+.+. .++ +..|++.+.+-+-.| ++.+ +++-+|+||.+++.+|. -+++.|+|++++
T Consensus 334 ~GiTI~~pP~~Sm~l~g~~~~~~~~~i~nyKqVGaW~~qtDGi~l--y~nS~i~dcF~h~nDD~iKlYhS~v~v~~~ViW 411 (582)
T PF03718_consen 334 EGITINDPPFHSMDLYGNENDKFSMNISNYKQVGAWYFQTDGIEL--YPNSTIRDCFIHVNDDAIKLYHSNVSVSNTVIW 411 (582)
T ss_dssp ES-EEE--SS-SEEEESSSGGGEEEEEEEEEEE---CTT----B----TT-EEEEEEEEESS-SEE--STTEEEEEEEEE
T ss_pred EeeEecCCCcceEEecCCccccccceeeceeeeeeEEeccCCccc--cCCCeeeeeEEEecCchhheeecCcceeeeEEE
Confidence 0 12 235555 443 468899999977554 4555 46778899999998876 689999999998
Q ss_pred CCC-e--eEEeecCCCCCCCcEEEEEEEeeEEEecc---------ceEEEE--eeCC--C-----CceeeeCcEEeeeEE
Q 047946 191 PGQ-G--ISVGSLGKGIKDEEVVGLTVRNCTFTCTS---------NGVRVK--TWPD--S-----HIGIASNFTFEDIVM 249 (321)
Q Consensus 191 ~~~-G--I~iGS~G~~~~~~~v~nI~v~n~~i~~~~---------~gi~ik--t~~g--~-----~~g~v~nIt~~ni~~ 249 (321)
..+ | |.+|.. ...+.||.|+|+.+..++ .+|--. .|.+ . ..-.||+++|+|++.
T Consensus 412 k~~Ngpiiq~GW~-----pr~isnv~veni~IIh~r~~~~~~~~n~~I~~ss~~y~~~~s~~~adp~~ti~~~~~~nv~~ 486 (582)
T PF03718_consen 412 KNENGPIIQWGWT-----PRNISNVSVENIDIIHNRWIWHNNYVNTAILGSSPFYDDMASTKTADPSTTIRNMTFSNVRC 486 (582)
T ss_dssp E-SSS-SEE--CS--------EEEEEEEEEEEEE---SSGGCTTT-ECEEE--BTTS-SSS--BEEEEEEEEEEEEEEEE
T ss_pred ecCCCCeEEeecc-----ccccCceEEeeeEEEeeeeecccCCCCceeEecccccccccCCCCCCcccceeeEEEEeEEE
Confidence 644 3 555542 467999999999999762 344222 2210 0 024678999999999
Q ss_pred ecCCc-cEEE
Q 047946 250 NNVEN-PIVI 258 (321)
Q Consensus 250 ~~v~~-~i~i 258 (321)
+..-. .+.|
T Consensus 487 EG~~~~l~ri 496 (582)
T PF03718_consen 487 EGMCPCLFRI 496 (582)
T ss_dssp ECCE-ECEEE
T ss_pred ecccceeEEE
Confidence 87543 4444
No 29
>smart00656 Amb_all Amb_all domain.
Probab=97.88 E-value=0.00035 Score=60.87 Aligned_cols=88 Identities=15% Similarity=0.201 Sum_probs=66.9
Q ss_pred EEEEeecceEEeceeEeCCCC------eEEEEEceeeEEEEeeEEecC---------CCC-------cccEEEEeEEEcC
Q 047946 134 IRFNFLNDSTITGIKSVDSRY------FHINILGCYNLKLNDLKITAH---------ADS-------SKDILVSEVFCGP 191 (321)
Q Consensus 134 i~~~~~~nv~I~~iti~ns~~------~~i~~~~s~nv~i~nv~I~~~---------~~~-------s~nI~I~n~~~~~ 191 (321)
+.+..++|+.|++|++.+... .+|.+..+++|.|+.+++... .|. +.+|+|++|.|..
T Consensus 34 l~i~~~~NVIirnl~i~~~~~~~~~~~D~i~~~~~~~VwIDHct~s~~~~~~~~~~~~D~~~di~~~s~~vTvs~~~f~~ 113 (190)
T smart00656 34 LTIKSVSNVIIRNLTIHDPKPVYGSDGDAISIDGSSNVWIDHVSLSGCTVTGFGDDTYDGLIDIKNGSTYVTISNNYFHN 113 (190)
T ss_pred EEEEecceEEEeCCEEECCccCCCCCCCEEEEeCCCeEEEEccEeEcceeccCCCCCCCccEEECcccccEEEECceEec
Confidence 666678899999999998643 579999999999999999986 232 7899999999975
Q ss_pred CC-eeEEeecCCCCCCCcEEEEEEEeeEEEec
Q 047946 192 GQ-GISVGSLGKGIKDEEVVGLTVRNCTFTCT 222 (321)
Q Consensus 192 ~~-GI~iGS~G~~~~~~~v~nI~v~n~~i~~~ 222 (321)
.+ +.-+|+--.. ......+|++.++.+.++
T Consensus 114 h~~~~liG~~d~~-~~~~~~~vT~h~N~~~~~ 144 (190)
T smart00656 114 HWKVMLLGHSDSD-TDDGKMRVTIAHNYFGNL 144 (190)
T ss_pred CCEEEEEccCCCc-cccccceEEEECcEEcCc
Confidence 44 7778763111 112356899999988763
No 30
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=97.87 E-value=9.1e-05 Score=61.18 Aligned_cols=128 Identities=21% Similarity=0.291 Sum_probs=86.3
Q ss_pred EEEEeecceEEeceeEeCCCCeEEEEEceeeEEEEeeEEecCCCC-----cccEEEEeEEEcCCC-eeEEeecCCCCCCC
Q 047946 134 IRFNFLNDSTITGIKSVDSRYFHINILGCYNLKLNDLKITAHADS-----SKDILVSEVFCGPGQ-GISVGSLGKGIKDE 207 (321)
Q Consensus 134 i~~~~~~nv~I~~iti~ns~~~~i~~~~s~nv~i~nv~I~~~~~~-----s~nI~I~n~~~~~~~-GI~iGS~G~~~~~~ 207 (321)
+.+....+++|++.++.+...+++++..+..++|++++|...... ..++++++|++.... |+.+-
T Consensus 3 i~i~~~~~~~i~~~~i~~~~~~gi~~~~~~~~~i~n~~i~~~~~gi~~~~~~~~~i~~~~~~~~~~~i~~~--------- 73 (158)
T PF13229_consen 3 ISINNGSNVTIRNCTISNNGGDGIHVSGSSNITIENCTISNGGYGIYVSGGSNVTISNNTISDNGSGIYVS--------- 73 (158)
T ss_dssp EEETTCEC-EEESEEEESSSSECEEE-SSCESEEES-EEESSTTSEEEECCES-EEES-EEES-SEEEECC---------
T ss_pred EEEECCcCeEEeeeEEEeCCCeEEEEEcCCCeEEECeEEECCCcEEEEecCCCeEEECeEEEEccceEEEE---------
Confidence 567777889999999999999999999999999999999983332 688999999998655 44442
Q ss_pred cEEEEEEEeeEEEeccc-eEEEEeeCCCCceeeeCcEEeeeEEecCC-ccEEEEeeecCCCCCCCCCCCCCCCEEEEeeE
Q 047946 208 EVVGLTVRNCTFTCTSN-GVRVKTWPDSHIGIASNFTFEDIVMNNVE-NPIVIDQLYCPYNKCNIKPKDSMPNIEIGNRN 285 (321)
Q Consensus 208 ~v~nI~v~n~~i~~~~~-gi~ikt~~g~~~g~v~nIt~~ni~~~~v~-~~i~i~~~y~~~~~~~~~ps~~~~ni~~~nI~ 285 (321)
...++++++|.+.++.. |+.++. .-+++++++.++.+.. .++.+...- . .++++++-.
T Consensus 74 ~~~~~~i~~~~i~~~~~~gi~~~~-------~~~~~~i~~n~~~~~~~~gi~~~~~~--------~-----~~~~i~~n~ 133 (158)
T PF13229_consen 74 GSSNITIENNRIENNGDYGIYISN-------SSSNVTIENNTIHNNGGSGIYLEGGS--------S-----PNVTIENNT 133 (158)
T ss_dssp S-CS-EEES-EEECSSS-SCE-TC-------EECS-EEES-EEECCTTSSCEEEECC---------------S-EEECEE
T ss_pred ecCCceecCcEEEcCCCccEEEec-------cCCCEEEEeEEEEeCcceeEEEECCC--------C-----CeEEEEEEE
Confidence 34778889999998766 777763 2367888999988876 577775521 0 257777777
Q ss_pred EEecC
Q 047946 286 LVYNG 290 (321)
Q Consensus 286 i~~~~ 290 (321)
+....
T Consensus 134 i~~~~ 138 (158)
T PF13229_consen 134 ISNNG 138 (158)
T ss_dssp EECES
T ss_pred EEeCc
Confidence 77765
No 31
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=97.82 E-value=9.8e-05 Score=64.90 Aligned_cols=85 Identities=16% Similarity=0.167 Sum_probs=59.9
Q ss_pred EeecceEEeceeEeC---------------CCCeEEEEEceeeEEEEeeEEecC--------CCC-------cccEEEEe
Q 047946 137 NFLNDSTITGIKSVD---------------SRYFHINILGCYNLKLNDLKITAH--------ADS-------SKDILVSE 186 (321)
Q Consensus 137 ~~~~nv~I~~iti~n---------------s~~~~i~~~~s~nv~i~nv~I~~~--------~~~-------s~nI~I~n 186 (321)
.+++|+.|+++++.+ .....+.+..++||.|+.+++... .|. +.+|+|++
T Consensus 43 ~~~~NVIirNl~~~~~~~~~~~~~~~~~~~~~~Dai~i~~~~nVWIDH~sfs~~~~~~~~~~~Dg~idi~~~s~~vTiS~ 122 (200)
T PF00544_consen 43 KGASNVIIRNLRFRNVPVDPGPDWSGDGDSSDGDAISIDNSSNVWIDHCSFSWGNFECNSDSSDGLIDIKKGSDNVTISN 122 (200)
T ss_dssp ESCEEEEEES-EEECEEEECSTEEETTEEECS--SEEEESTEEEEEES-EEEETTS-GGGSSSSSSEEEESSTEEEEEES
T ss_pred cCCCeEEEECCEEEeccccCCcccCCCccccCCCeEEEEecccEEEeccEEeccccccccccCCceEEEEeCCceEEEEc
Confidence 478999999999998 233558899999999999999988 554 88999999
Q ss_pred EEEcCCC-eeEEeecCCCCCCCcEEEEEEEeeEEEec
Q 047946 187 VFCGPGQ-GISVGSLGKGIKDEEVVGLTVRNCTFTCT 222 (321)
Q Consensus 187 ~~~~~~~-GI~iGS~G~~~~~~~v~nI~v~n~~i~~~ 222 (321)
|.+...+ +.-+|+......... .+|++..+.+.++
T Consensus 123 n~f~~~~k~~l~G~~d~~~~~~~-~~vT~hhN~f~~~ 158 (200)
T PF00544_consen 123 NIFDNHNKTMLIGSSDSNSTDRG-LRVTFHHNYFANT 158 (200)
T ss_dssp -EEEEEEETCEESSCTTCGGGTT-EEEEEES-EEEEE
T ss_pred hhccccccccccCCCCCccccCC-ceEEEEeEEECch
Confidence 9987532 566776322212234 8999999999764
No 32
>PLN02773 pectinesterase
Probab=97.70 E-value=0.0076 Score=56.54 Aligned_cols=141 Identities=10% Similarity=0.010 Sum_probs=75.9
Q ss_pred hHHHHHHHHHHHhhcCCCccEEEecCceEEEeeeeeecccCCceEEEEcCeEEEEEEcCCeEEec----cEEEecccccc
Q 047946 42 DSKAFDTSWREAWNWDGIKGTVLVPPGKYLVSFAEFEGPCKASISFQLQGLLDLFSIDTSLSLAK----GTFHGQGETAW 117 (321)
Q Consensus 42 dt~Aiq~Ai~~ac~~~g~g~~v~vP~G~y~~~~l~l~g~~~s~v~l~i~G~l~~i~~~~ni~I~G----G~idG~G~~~w 117 (321)
|-.-||+||+++.......-+|+|.+|+|. ..+.+.. -+.+++|+.++.- +..|+. +.+...+..
T Consensus 16 df~TIq~Aida~P~~~~~~~~I~Ik~G~Y~-E~V~I~~-~k~~itl~G~~~~-------~TiI~~~~~a~~~~~~~~~-- 84 (317)
T PLN02773 16 DYCTVQDAIDAVPLCNRCRTVIRVAPGVYR-QPVYVPK-TKNLITLAGLSPE-------ATVLTWNNTATKIDHHQAS-- 84 (317)
T ss_pred CccCHHHHHhhchhcCCceEEEEEeCceEE-EEEEECc-CCccEEEEeCCCC-------ceEEEccCccccccccccc--
Confidence 577899999654432210357899999998 3555531 1135777665410 111121 011000000
Q ss_pred CCccCCCCCCCCCCeeEEEEeecceEEeceeEeCCCCe----EEEE-EceeeEEEEeeEEecCCCC----cccEEEEeEE
Q 047946 118 PLNQCHKNSDCQLPTPIRFNFLNDSTITGIKSVDSRYF----HINI-LGCYNLKLNDLKITAHADS----SKDILVSEVF 188 (321)
Q Consensus 118 ~~~~~~~~~~~~rp~~i~~~~~~nv~I~~iti~ns~~~----~i~~-~~s~nv~i~nv~I~~~~~~----s~nI~I~n~~ 188 (321)
...+.........+...+++.++|||+.|+..- .+.+ ...+.+.+.+|++.+..|- ...-.++||+
T Consensus 85 -----~~~g~gT~~SaTv~v~a~~f~a~nlT~~Nt~~~~~gQAvAl~v~gDr~~f~~c~~~G~QDTL~~~~gr~yf~~c~ 159 (317)
T PLN02773 85 -----RVIGTGTFGCGTVIVEGEDFIAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQYLRDCY 159 (317)
T ss_pred -----cccCcCccCceEEEEECCCeEEEeeEEEeCCCCCCCcEEEEEecCccEEEEccEeecccceeEeCCCCEEEEeeE
Confidence 000000111233445688999999999998431 1222 2468889999999987764 3346666666
Q ss_pred EcCCCeeEEe
Q 047946 189 CGPGQGISVG 198 (321)
Q Consensus 189 ~~~~~GI~iG 198 (321)
+.+.--+-+|
T Consensus 160 IeG~VDFIFG 169 (317)
T PLN02773 160 IEGSVDFIFG 169 (317)
T ss_pred EeecccEEee
Confidence 6643233333
No 33
>PLN02480 Probable pectinesterase
Probab=97.58 E-value=0.0036 Score=59.30 Aligned_cols=126 Identities=9% Similarity=-0.018 Sum_probs=73.5
Q ss_pred cchHHHHHHHHHHHhhcCCC-ccEEEecCceEEEeeeeeecccCCceEEEEcCeEEEEEEcCCeEEeccEEEeccccccC
Q 047946 40 TDDSKAFDTSWREAWNWDGI-KGTVLVPPGKYLVSFAEFEGPCKASISFQLQGLLDLFSIDTSLSLAKGTFHGQGETAWP 118 (321)
Q Consensus 40 tddt~Aiq~Ai~~ac~~~g~-g~~v~vP~G~y~~~~l~l~g~~~s~v~l~i~G~l~~i~~~~ni~I~GG~idG~G~~~w~ 118 (321)
..|-..||+||+++ ....+ .-+|+|.+|+|. ..+.+.- .+.+++|+.+|.= .. +|+++...
T Consensus 57 ~g~f~TIQ~AIdaa-p~~~~~~~~I~Ik~GvY~-E~V~I~~-~kp~ItL~G~g~~-------~T-----vI~~~~~~--- 118 (343)
T PLN02480 57 KGDFTSVQSAIDAV-PVGNSEWIIVHLRKGVYR-EKVHIPE-NKPFIFMRGNGKG-------RT-----SIVWSQSS--- 118 (343)
T ss_pred CCCcccHHHHHhhC-ccCCCceEEEEEcCcEEE-EEEEECC-CCceEEEEecCCC-------Ce-----EEEccccc---
Confidence 35788999999654 33220 235889999998 5666631 1135666554410 11 34433211
Q ss_pred CccCCCCCCCCCCeeEEEEeecceEEeceeEeCCCC---------eEEEE-EceeeEEEEeeEEecCCCC----cccEEE
Q 047946 119 LNQCHKNSDCQLPTPIRFNFLNDSTITGIKSVDSRY---------FHINI-LGCYNLKLNDLKITAHADS----SKDILV 184 (321)
Q Consensus 119 ~~~~~~~~~~~rp~~i~~~~~~nv~I~~iti~ns~~---------~~i~~-~~s~nv~i~nv~I~~~~~~----s~nI~I 184 (321)
... .+. .......++++++||+++|+.. -.+.+ ...+++.+.||++.+..|- ...-.+
T Consensus 119 ----~~~---~~s-aTvtV~a~~f~a~nLTf~Nta~~g~~~~~~~QAVAl~v~gDra~f~~c~f~G~QDTLy~~~gR~yf 190 (343)
T PLN02480 119 ----SDN---AAS-ATFTVEAPHFVAFGISIRNDAPTGMAFTSENQSVAAFVGADKVAFYHCAFYSTHNTLFDYKGRHYY 190 (343)
T ss_pred ----cCC---CCc-eEEEEECCCEEEEeeEEEecCCCCCCCCCCCceEEEEecCCcEEEEeeEEecccceeEeCCCCEEE
Confidence 000 011 2233457899999999999831 23433 3578899999999987764 334555
Q ss_pred EeEEEcC
Q 047946 185 SEVFCGP 191 (321)
Q Consensus 185 ~n~~~~~ 191 (321)
+||++.+
T Consensus 191 ~~C~IeG 197 (343)
T PLN02480 191 HSCYIQG 197 (343)
T ss_pred EeCEEEe
Confidence 6666553
No 34
>PLN02170 probable pectinesterase/pectinesterase inhibitor
Probab=97.56 E-value=0.011 Score=58.97 Aligned_cols=129 Identities=13% Similarity=0.081 Sum_probs=75.9
Q ss_pred chHHHHHHHHHHHhhcCCC-ccEEEecCceEEEeeeeeecccCCceEEEEcCeEEEEEEcCCeEEeccEEEeccccccCC
Q 047946 41 DDSKAFDTSWREAWNWDGI-KGTVLVPPGKYLVSFAEFEGPCKASISFQLQGLLDLFSIDTSLSLAKGTFHGQGETAWPL 119 (321)
Q Consensus 41 ddt~Aiq~Ai~~ac~~~g~-g~~v~vP~G~y~~~~l~l~g~~~s~v~l~i~G~l~~i~~~~ni~I~GG~idG~G~~~w~~ 119 (321)
-|-..||+||+++.....+ .-+|+|.+|+|.- .+.+.. .|.+++|+.+|.= ...|+|..-.+.| |.
T Consensus 235 G~f~TIq~AI~a~~~~~~~~r~vI~Ik~GvY~E-~V~I~~-~k~nItl~G~g~~-------~TiIt~~~~~~~g---~~- 301 (529)
T PLN02170 235 GTHKTIGEALLSTSLESGGGRTVIYLKAGTYHE-NLNIPT-KQKNVMLVGDGKG-------KTVIVGSRSNRGG---WT- 301 (529)
T ss_pred CchhhHHHHHHhcccccCCceEEEEEeCCeeEE-EEecCC-CCceEEEEEcCCC-------CeEEEeCCcCCCC---Cc-
Confidence 4578999999654322111 4689999999973 444421 1257777666520 1222331000011 10
Q ss_pred ccCCCCCCCCCCeeEEEEeecceEEeceeEeCCCCe----EEEE-EceeeEEEEeeEEecCCCC----cccEEEEeEEEc
Q 047946 120 NQCHKNSDCQLPTPIRFNFLNDSTITGIKSVDSRYF----HINI-LGCYNLKLNDLKITAHADS----SKDILVSEVFCG 190 (321)
Q Consensus 120 ~~~~~~~~~~rp~~i~~~~~~nv~I~~iti~ns~~~----~i~~-~~s~nv~i~nv~I~~~~~~----s~nI~I~n~~~~ 190 (321)
...........+++..+||+++|+... .+.+ ...+...+.+|++.+..|- ...-..++|++.
T Consensus 302 ---------T~~SaTv~v~~~~F~a~nitf~Ntag~~~~QAVALrv~gDr~~fy~C~f~GyQDTLy~~~~Rqyy~~C~I~ 372 (529)
T PLN02170 302 ---------TYQTATVAAMGDGFIARDITFVNSAGPNSEQAVALRVGSDKSVVYRCSVEGYQDSLYTHSKRQFYRETDIT 372 (529)
T ss_pred ---------cccceEEEEEcCCeEEEeeEEEecCCCCCCceEEEEecCCcEEEEeeeEeccCCcceeCCCCEEEEeeEEc
Confidence 111234455678999999999998432 2222 2477889999999998764 344566777766
Q ss_pred C
Q 047946 191 P 191 (321)
Q Consensus 191 ~ 191 (321)
+
T Consensus 373 G 373 (529)
T PLN02170 373 G 373 (529)
T ss_pred c
Confidence 4
No 35
>PLN02665 pectinesterase family protein
Probab=97.51 E-value=0.017 Score=55.28 Aligned_cols=127 Identities=9% Similarity=0.033 Sum_probs=71.2
Q ss_pred chHHHHHHHHHHHhhcCCCccEEEecCceEEEeeeeeecccCCceEEEEcCeEEEEEEcCCeEEeccEEEeccccccCCc
Q 047946 41 DDSKAFDTSWREAWNWDGIKGTVLVPPGKYLVSFAEFEGPCKASISFQLQGLLDLFSIDTSLSLAKGTFHGQGETAWPLN 120 (321)
Q Consensus 41 ddt~Aiq~Ai~~ac~~~g~g~~v~vP~G~y~~~~l~l~g~~~s~v~l~i~G~l~~i~~~~ni~I~GG~idG~G~~~w~~~ 120 (321)
-|-..||+||+++-......-+|+|.+|+|.- .+.+. ..|.+++|+.+|.= .. +|..++..
T Consensus 78 Gdf~TIq~AIdaiP~~~~~r~vI~Ik~GvY~E-kV~Ip-~~kp~Itl~G~~~~-------~t-----iIt~~~~a----- 138 (366)
T PLN02665 78 GDFKTITDAIKSIPAGNTQRVIIDIGPGEYNE-KITID-RSKPFVTLYGSPGA-------MP-----TLTFDGTA----- 138 (366)
T ss_pred CCccCHHHHHhhCcccCCceEEEEEeCcEEEE-EEEec-CCCCEEEEEecCCC-------CC-----EEEECCcc-----
Confidence 35778999996543322103478899999983 44442 11246777665420 11 12211110
Q ss_pred cCCCCCCCCCCeeEEEEeecceEEeceeEeCCCC---------eEEEE-EceeeEEEEeeEEecCCCC----cccEEEEe
Q 047946 121 QCHKNSDCQLPTPIRFNFLNDSTITGIKSVDSRY---------FHINI-LGCYNLKLNDLKITAHADS----SKDILVSE 186 (321)
Q Consensus 121 ~~~~~~~~~rp~~i~~~~~~nv~I~~iti~ns~~---------~~i~~-~~s~nv~i~nv~I~~~~~~----s~nI~I~n 186 (321)
... ...........++++..+||+++|+.. -.+.+ ...+...+.||++.+..|- .-.-.+++
T Consensus 139 --~~~--gT~~SaTv~v~a~~F~a~nitf~Nta~~~~~~~~g~QAVAl~v~gDka~f~~C~f~G~QDTL~~~~gr~yf~~ 214 (366)
T PLN02665 139 --AKY--GTVYSATLIVESDYFMAANIIIKNSAPRPDGKRKGAQAVAMRISGDKAAFYNCRFIGFQDTLCDDKGRHFFKD 214 (366)
T ss_pred --CCC--CCcceEEEEEECCCeEEEeeEEEeCCCCcCCCCCCcceEEEEEcCCcEEEEcceeccccceeEeCCCCEEEEe
Confidence 000 011123445578999999999999742 12222 2467888999999987764 33355566
Q ss_pred EEEc
Q 047946 187 VFCG 190 (321)
Q Consensus 187 ~~~~ 190 (321)
|++.
T Consensus 215 CyIe 218 (366)
T PLN02665 215 CYIE 218 (366)
T ss_pred eEEe
Confidence 6554
No 36
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=97.51 E-value=0.0033 Score=60.96 Aligned_cols=120 Identities=15% Similarity=0.107 Sum_probs=85.0
Q ss_pred eEEEEeecceEEeceeEeCCC------CeEEEEEceeeEEEEeeEEecCC-CC-----cccEEEEeEEEcCCCeeEEeec
Q 047946 133 PIRFNFLNDSTITGIKSVDSR------YFHINILGCYNLKLNDLKITAHA-DS-----SKDILVSEVFCGPGQGISVGSL 200 (321)
Q Consensus 133 ~i~~~~~~nv~I~~iti~ns~------~~~i~~~~s~nv~i~nv~I~~~~-~~-----s~nI~I~n~~~~~~~GI~iGS~ 200 (321)
++.-...++++|+|+++.++. ...|++..|++++|++++|.++. .. ++ ..|+++.+.+.....|-+
T Consensus 108 lIiai~A~nVTIsGLtIdGsG~dl~~rdAgI~v~~a~~v~Iedn~L~gsg~FGI~L~~~~-~~I~~N~I~g~~~~~I~l- 185 (455)
T TIGR03808 108 LLSSEGADGIGLSGLTLDGGGIPLPQRRGLIHCQGGRDVRITDCEITGSGGNGIWLETVS-GDISGNTITQIAVTAIVS- 185 (455)
T ss_pred EEEEecCCCeEEEeeEEEeCCCcccCCCCEEEEccCCceEEEeeEEEcCCcceEEEEcCc-ceEecceEeccccceEEE-
Confidence 455567899999999999875 35788999999999999999985 33 65 777777766533222322
Q ss_pred CCCCCCCcEEEEEEEeeEEEecc-ceEEEEee--------------------CCC---C-----ceeeeCcEEeeeEEec
Q 047946 201 GKGIKDEEVVGLTVRNCTFTCTS-NGVRVKTW--------------------PDS---H-----IGIASNFTFEDIVMNN 251 (321)
Q Consensus 201 G~~~~~~~v~nI~v~n~~i~~~~-~gi~ikt~--------------------~g~---~-----~g~v~nIt~~ni~~~~ 251 (321)
...++..|+++++.++. +||.|.-| +|+ + -....++++++.++.+
T Consensus 186 ------w~S~g~~V~~N~I~g~RD~gi~i~r~~~~~dg~~v~~n~i~~i~a~~gg~~~~GNGI~~~~a~~v~V~gN~I~~ 259 (455)
T TIGR03808 186 ------FDALGLIVARNTIIGANDNGIEILRSAIGDDGTIVTDNRIEDIKAGPGGSGQYGNAINAFRAGNVIVRGNRIRN 259 (455)
T ss_pred ------eccCCCEEECCEEEccCCCCeEEEEeeecCCcceeeccccccccccCCCcCCccccEEEEccCCeEEECCEEec
Confidence 24578899999999865 47777655 111 0 1235778888888888
Q ss_pred CC-ccEEEEe
Q 047946 252 VE-NPIVIDQ 260 (321)
Q Consensus 252 v~-~~i~i~~ 260 (321)
++ .+|++..
T Consensus 260 ~r~dgI~~ns 269 (455)
T TIGR03808 260 CDYSAVRGNS 269 (455)
T ss_pred cccceEEEEc
Confidence 88 6777653
No 37
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=97.43 E-value=0.0019 Score=53.09 Aligned_cols=111 Identities=19% Similarity=0.246 Sum_probs=65.9
Q ss_pred eEEEEeecceEEeceeEeCCCCeEEEEEceeeEEEEeeEEecCC-----CCcccEEEEeEEEcCC--CeeEEeecCCCCC
Q 047946 133 PIRFNFLNDSTITGIKSVDSRYFHINILGCYNLKLNDLKITAHA-----DSSKDILVSEVFCGPG--QGISVGSLGKGIK 205 (321)
Q Consensus 133 ~i~~~~~~nv~I~~iti~ns~~~~i~~~~s~nv~i~nv~I~~~~-----~~s~nI~I~n~~~~~~--~GI~iGS~G~~~~ 205 (321)
.+.+..+..+.|++.++.+ ...++.+....+++++++++.... ..+.+++|++|.+... .||.+..
T Consensus 25 gi~~~~~~~~~i~n~~i~~-~~~gi~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~i~~~~i~~~~~~gi~~~~------ 97 (158)
T PF13229_consen 25 GIHVSGSSNITIENCTISN-GGYGIYVSGGSNVTISNNTISDNGSGIYVSGSSNITIENNRIENNGDYGIYISN------ 97 (158)
T ss_dssp CEEE-SSCESEEES-EEES-STTSEEEECCES-EEES-EEES-SEEEECCS-CS-EEES-EEECSSS-SCE-TC------
T ss_pred EEEEEcCCCeEEECeEEEC-CCcEEEEecCCCeEEECeEEEEccceEEEEecCCceecCcEEEcCCCccEEEec------
Confidence 5677777777888888888 666777777788888888887654 1277888888888752 2676632
Q ss_pred CCcEEEEEEEeeEEEecc-ceEEEEeeCCCCceeeeCcEEeeeEEecCC-ccEEE
Q 047946 206 DEEVVGLTVRNCTFTCTS-NGVRVKTWPDSHIGIASNFTFEDIVMNNVE-NPIVI 258 (321)
Q Consensus 206 ~~~v~nI~v~n~~i~~~~-~gi~ikt~~g~~~g~v~nIt~~ni~~~~v~-~~i~i 258 (321)
...++++++|+|.+.. .|+.+.... -.+++++++++.+.. .+|.+
T Consensus 98 --~~~~~~i~~n~~~~~~~~gi~~~~~~------~~~~~i~~n~i~~~~~~gi~~ 144 (158)
T PF13229_consen 98 --SSSNVTIENNTIHNNGGSGIYLEGGS------SPNVTIENNTISNNGGNGIYL 144 (158)
T ss_dssp --EECS-EEES-EEECCTTSSCEEEECC--------S-EEECEEEECESSEEEE-
T ss_pred --cCCCEEEEeEEEEeCcceeEEEECCC------CCeEEEEEEEEEeCcceeEEE
Confidence 2356888888888766 677776543 146677777776544 45544
No 38
>PLN02708 Probable pectinesterase/pectinesterase inhibitor
Probab=97.40 E-value=0.016 Score=58.47 Aligned_cols=148 Identities=9% Similarity=0.007 Sum_probs=88.2
Q ss_pred chHHHHHHHHHHHhhcC--CCccEEEecCceEEEeeeeeecccCCceEEEEcCeEEEEEEcCCeEEeccEEEeccccccC
Q 047946 41 DDSKAFDTSWREAWNWD--GIKGTVLVPPGKYLVSFAEFEGPCKASISFQLQGLLDLFSIDTSLSLAKGTFHGQGETAWP 118 (321)
Q Consensus 41 ddt~Aiq~Ai~~ac~~~--g~g~~v~vP~G~y~~~~l~l~g~~~s~v~l~i~G~l~~i~~~~ni~I~GG~idG~G~~~w~ 118 (321)
-|-.-||+||+++-... . .-+|+|.+|+|.- .+.+.. .+.+++|+.+|.= ...|+| +...-++
T Consensus 251 g~f~TIq~Av~a~p~~~~~~-r~vI~vk~GvY~E-~V~i~~-~k~~v~l~G~g~~-------~TiIt~-----~~~~~~~ 315 (553)
T PLN02708 251 CCYKTVQEAVNAAPDNNGDR-KFVIRIKEGVYEE-TVRVPL-EKKNVVFLGDGMG-------KTVITG-----SLNVGQP 315 (553)
T ss_pred CCccCHHHHHHhhhhccCCc-cEEEEEeCceEEe-eeeecC-CCccEEEEecCCC-------ceEEEe-----cCccCCC
Confidence 35778999996654422 2 4589999999984 444421 1256777666520 112222 1100000
Q ss_pred CccCCCCCCCCCCeeEEEEeecceEEeceeEeCCCCe----EEEE-EceeeEEEEeeEEecCCCC----cccEEEEeEEE
Q 047946 119 LNQCHKNSDCQLPTPIRFNFLNDSTITGIKSVDSRYF----HINI-LGCYNLKLNDLKITAHADS----SKDILVSEVFC 189 (321)
Q Consensus 119 ~~~~~~~~~~~rp~~i~~~~~~nv~I~~iti~ns~~~----~i~~-~~s~nv~i~nv~I~~~~~~----s~nI~I~n~~~ 189 (321)
+-......-.....+++..+||++.|+..- .+.+ ...+.+.+.||+|.+..|- +..-.+++|++
T Consensus 316 -------g~~T~~saT~~v~~~~f~a~~it~~Ntag~~~~QAVAlrv~~D~~~f~~c~~~G~QDTLy~~~~rq~y~~C~I 388 (553)
T PLN02708 316 -------GISTYNTATVGVLGDGFMARDLTIQNTAGPDAHQAVAFRSDSDLSVIENCEFLGNQDTLYAHSLRQFYKSCRI 388 (553)
T ss_pred -------CcCccceEEEEEEcCCeEEEeeEEEcCCCCCCCceEEEEecCCcEEEEeeeeeeccccceeCCCceEEEeeEE
Confidence 000111233444678999999999998642 2222 2578899999999998775 44567788888
Q ss_pred cCCCeeEEeecCCCCCCCcEEEEEEEeeEEE
Q 047946 190 GPGQGISVGSLGKGIKDEEVVGLTVRNCTFT 220 (321)
Q Consensus 190 ~~~~GI~iGS~G~~~~~~~v~nI~v~n~~i~ 220 (321)
.+.--+-+|. -...|+||+|.
T Consensus 389 ~GtVDFIFG~----------a~avfq~c~i~ 409 (553)
T PLN02708 389 QGNVDFIFGN----------SAAVFQDCAIL 409 (553)
T ss_pred eecCCEEecC----------ceEEEEccEEE
Confidence 7543444542 35667777776
No 39
>PLN02497 probable pectinesterase
Probab=97.38 E-value=0.051 Score=51.25 Aligned_cols=125 Identities=12% Similarity=0.074 Sum_probs=70.5
Q ss_pred chHHHHHHHHHHHhhcCCCccEEEecCceEEEeeeeeecccCCceEEEEcCeEEEEEEcCCeEEeccEEEeccccccCCc
Q 047946 41 DDSKAFDTSWREAWNWDGIKGTVLVPPGKYLVSFAEFEGPCKASISFQLQGLLDLFSIDTSLSLAKGTFHGQGETAWPLN 120 (321)
Q Consensus 41 ddt~Aiq~Ai~~ac~~~g~g~~v~vP~G~y~~~~l~l~g~~~s~v~l~i~G~l~~i~~~~ni~I~GG~idG~G~~~w~~~ 120 (321)
-|-..||+||+++-......-+|+|-+|+|.- .+.+.. .|.+++|+.+|.= .. +|. |+..
T Consensus 42 Gdf~TIq~AIdavP~~~~~~~~I~Ik~G~Y~E-kV~Ip~-~k~~itl~G~g~~-------~t-----iIt------~~~~ 101 (331)
T PLN02497 42 GNFTTIQSAIDSVPSNNKHWFCINVKAGLYRE-KVKIPY-DKPFIVLVGAGKR-------RT-----RIE------WDDH 101 (331)
T ss_pred CCccCHHHHHhhccccCCceEEEEEeCcEEEE-EEEecC-CCCcEEEEecCCC-------Cc-----eEE------Eecc
Confidence 35779999996543322103469999999964 444421 1256777666520 01 111 1100
Q ss_pred cCCCCCCCCCCeeEEEEeecceEEeceeEeCCCCe-----------EEEE-EceeeEEEEeeEEecCCCC----cccEEE
Q 047946 121 QCHKNSDCQLPTPIRFNFLNDSTITGIKSVDSRYF-----------HINI-LGCYNLKLNDLKITAHADS----SKDILV 184 (321)
Q Consensus 121 ~~~~~~~~~rp~~i~~~~~~nv~I~~iti~ns~~~-----------~i~~-~~s~nv~i~nv~I~~~~~~----s~nI~I 184 (321)
... ...++ .....+++..+||++.|+..+ .+.+ ...+...+.+|++.+..|- ...-.+
T Consensus 102 --~~t--~~SaT--~~v~a~~f~a~nlT~~Nt~~~~~~~~~~~~~QAVAl~v~gDr~~fy~C~f~G~QDTLy~~~gRqyf 175 (331)
T PLN02497 102 --DST--AQSPT--FSTLADNTVVKSITFANSYNFPSKGNKNPRVPAVAAMIGGDKSAFYSCGFAGVQDTLWDSDGRHYF 175 (331)
T ss_pred --ccc--cCceE--EEEecCCeEEEccEEEeCCCCccccCCCCCcceEEEEecCCcEEEEeeEEeccccceeeCCCcEEE
Confidence 000 01233 234678999999999998532 2222 2467888999999987764 334555
Q ss_pred EeEEEcC
Q 047946 185 SEVFCGP 191 (321)
Q Consensus 185 ~n~~~~~ 191 (321)
+||++.+
T Consensus 176 ~~C~IeG 182 (331)
T PLN02497 176 KRCTIQG 182 (331)
T ss_pred EeCEEEe
Confidence 6666553
No 40
>PLN02304 probable pectinesterase
Probab=97.30 E-value=0.027 Score=53.96 Aligned_cols=136 Identities=13% Similarity=0.149 Sum_probs=77.0
Q ss_pred chHHHHHHHHHHHhhcCCCccEEEecCceEEEeeeeeecccCCceEEEEcCeEEEEEEcCCeEEeccEEEeccccccCCc
Q 047946 41 DDSKAFDTSWREAWNWDGIKGTVLVPPGKYLVSFAEFEGPCKASISFQLQGLLDLFSIDTSLSLAKGTFHGQGETAWPLN 120 (321)
Q Consensus 41 ddt~Aiq~Ai~~ac~~~g~g~~v~vP~G~y~~~~l~l~g~~~s~v~l~i~G~l~~i~~~~ni~I~GG~idG~G~~~w~~~ 120 (321)
-|-.-||+||+++-......-+|+|.+|+|.- .+.+.- .|.+++|+.+|.= ...|+ |+..
T Consensus 85 Gdf~TIQ~AIdavP~~~~~r~vI~Ik~GvY~E-kV~Ip~-~K~~Itl~G~g~~-------~TiIt-----------~~~~ 144 (379)
T PLN02304 85 CNFTTVQSAVDAVGNFSQKRNVIWINSGIYYE-KVTVPK-TKPNITFQGQGFD-------STAIA-----------WNDT 144 (379)
T ss_pred CCccCHHHHHhhCcccCCCcEEEEEeCeEeEE-EEEECC-CCCcEEEEecCCC-------CcEEE-----------ccCc
Confidence 45778999996543322103578999999973 444421 1257777666520 11111 1110
Q ss_pred cCCCCCCCCCCeeEEEEeecceEEeceeEeCCCC---------eEEEE-EceeeEEEEeeEEecCCCC----cccEEEEe
Q 047946 121 QCHKNSDCQLPTPIRFNFLNDSTITGIKSVDSRY---------FHINI-LGCYNLKLNDLKITAHADS----SKDILVSE 186 (321)
Q Consensus 121 ~~~~~~~~~rp~~i~~~~~~nv~I~~iti~ns~~---------~~i~~-~~s~nv~i~nv~I~~~~~~----s~nI~I~n 186 (321)
...........-.....+++..+||++.|+.. -.+.+ ...+...+.+|++.+..|- .-.-.++|
T Consensus 145 --a~~~~gT~~SaTv~v~a~~F~a~nITf~Nta~~~~~g~~~~QAVAL~v~gDra~fy~C~f~G~QDTLy~~~gR~Yf~~ 222 (379)
T PLN02304 145 --AKSANGTFYSASVQVFASNFIAKNISFMNVAPIPKPGDVGAQAVAIRIAGDQAAFWGCGFFGAQDTLHDDRGRHYFKD 222 (379)
T ss_pred --ccCCCCccceEEEEEECCCeEEEeeEEEecCCCCCCCCCCccEEEEEecCCcEEEEeceEecccceeEeCCCCEEEEe
Confidence 00000011123333456899999999999842 12222 2578899999999998774 44566778
Q ss_pred EEEcCCCeeEEe
Q 047946 187 VFCGPGQGISVG 198 (321)
Q Consensus 187 ~~~~~~~GI~iG 198 (321)
|++.+.--+-+|
T Consensus 223 CyIeG~VDFIFG 234 (379)
T PLN02304 223 CYIQGSIDFIFG 234 (379)
T ss_pred eEEcccccEEec
Confidence 877753334444
No 41
>PLN02933 Probable pectinesterase/pectinesterase inhibitor
Probab=97.25 E-value=0.032 Score=55.77 Aligned_cols=127 Identities=14% Similarity=0.092 Sum_probs=75.1
Q ss_pred chHHHHHHHHHHHhhcCCCccEEEecCceEEEeeeeeecccCCceEEEEcCeEEEEEEcCCeEEec--cEEEeccccccC
Q 047946 41 DDSKAFDTSWREAWNWDGIKGTVLVPPGKYLVSFAEFEGPCKASISFQLQGLLDLFSIDTSLSLAK--GTFHGQGETAWP 118 (321)
Q Consensus 41 ddt~Aiq~Ai~~ac~~~g~g~~v~vP~G~y~~~~l~l~g~~~s~v~l~i~G~l~~i~~~~ni~I~G--G~idG~G~~~w~ 118 (321)
-|-..||+||+++.......-+|+|.+|+|. ..+.+.- .+.+++|+.+|.= ...|++ ...|| |.
T Consensus 228 G~f~TIq~Ai~a~P~~~~~r~vI~Ik~GvY~-E~V~I~~-~k~~itl~G~g~~-------~TiIt~~~~~~dg-----~~ 293 (530)
T PLN02933 228 GNFTTINEAVSAAPNSSETRFIIYIKGGEYF-ENVELPK-KKTMIMFIGDGIG-------KTVIKANRSRIDG-----WS 293 (530)
T ss_pred CCccCHHHHHHhchhcCCCcEEEEEcCceEE-EEEEecC-CCceEEEEEcCCC-------CcEEEeCCccCCC-----Cc
Confidence 3577899999654332210457999999998 4555531 1246777666520 122233 11111 10
Q ss_pred CccCCCCCCCCCCeeEEEEeecceEEeceeEeCCCCe----EEEE-EceeeEEEEeeEEecCCCC----cccEEEEeEEE
Q 047946 119 LNQCHKNSDCQLPTPIRFNFLNDSTITGIKSVDSRYF----HINI-LGCYNLKLNDLKITAHADS----SKDILVSEVFC 189 (321)
Q Consensus 119 ~~~~~~~~~~~rp~~i~~~~~~nv~I~~iti~ns~~~----~i~~-~~s~nv~i~nv~I~~~~~~----s~nI~I~n~~~ 189 (321)
..-..-.....+++..+||++.|+... .+.+ ...+...+.+|++.+..|- ...-.+++|++
T Consensus 294 ----------T~~SaT~~v~a~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G~QDTLy~~~~Rqyy~~C~I 363 (530)
T PLN02933 294 ----------TFQTATVGVKGKGFIAKDISFVNYAGPAKHQAVALRSGSDHSAFYRCEFDGYQDTLYVHSAKQFYRECDI 363 (530)
T ss_pred ----------cccceEEEEECCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEEeEEEecccccccCCCceEEEeeEE
Confidence 111233445678999999999998542 2333 2578889999999988764 33356677766
Q ss_pred cC
Q 047946 190 GP 191 (321)
Q Consensus 190 ~~ 191 (321)
.+
T Consensus 364 eG 365 (530)
T PLN02933 364 YG 365 (530)
T ss_pred ec
Confidence 54
No 42
>PLN02713 Probable pectinesterase/pectinesterase inhibitor
Probab=97.21 E-value=0.028 Score=56.85 Aligned_cols=126 Identities=13% Similarity=0.081 Sum_probs=73.8
Q ss_pred chHHHHHHHHHHHhhc----CCCccEEEecCceEEEeeeeeecccCCceEEEEcCeEEEEEEcCCeEEec--cEEEeccc
Q 047946 41 DDSKAFDTSWREAWNW----DGIKGTVLVPPGKYLVSFAEFEGPCKASISFQLQGLLDLFSIDTSLSLAK--GTFHGQGE 114 (321)
Q Consensus 41 ddt~Aiq~Ai~~ac~~----~g~g~~v~vP~G~y~~~~l~l~g~~~s~v~l~i~G~l~~i~~~~ni~I~G--G~idG~G~ 114 (321)
-|-..||+||+++-.. .+ .-+|||.+|+|.- .+.+.- .+.+++|+.+|.- ...|+| -..||
T Consensus 260 G~f~TIq~Av~a~p~~~~~~~~-~~vI~Ik~G~Y~E-~V~i~~-~k~~i~l~G~g~~-------~TiIt~~~~~~~g--- 326 (566)
T PLN02713 260 GNFTTINDAVAAAPNNTDGSNG-YFVIYVTAGVYEE-YVSIPK-NKKYLMMIGDGIN-------QTVITGNRSVVDG--- 326 (566)
T ss_pred CCCCCHHHHHHhhhcccCCCCc-eEEEEEcCcEEEE-EEEecC-CCceEEEEecCCC-------CcEEEcCCcccCC---
Confidence 3577899999654332 12 3579999999974 444431 1256777666520 223333 11122
Q ss_pred cccCCccCCCCCCCCCCeeEEEEeecceEEeceeEeCCCCe----EEEE-EceeeEEEEeeEEecCCCC----cccEEEE
Q 047946 115 TAWPLNQCHKNSDCQLPTPIRFNFLNDSTITGIKSVDSRYF----HINI-LGCYNLKLNDLKITAHADS----SKDILVS 185 (321)
Q Consensus 115 ~~w~~~~~~~~~~~~rp~~i~~~~~~nv~I~~iti~ns~~~----~i~~-~~s~nv~i~nv~I~~~~~~----s~nI~I~ 185 (321)
|. ...........+++..+||++.|+... .+.+ ...+...+.+|++.+..|- ...-.++
T Consensus 327 --~~----------T~~SaT~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G~QDTLy~~~~Rqyy~ 394 (566)
T PLN02713 327 --WT----------TFNSATFAVVGQNFVAVNITFRNTAGPAKHQAVALRSGADLSTFYSCSFEAYQDTLYTHSLRQFYR 394 (566)
T ss_pred --Cc----------cccceeEEEECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeeccCCcceEECCCCEEEE
Confidence 11 011123334568999999999997432 2222 2567888999999987764 3345666
Q ss_pred eEEEcC
Q 047946 186 EVFCGP 191 (321)
Q Consensus 186 n~~~~~ 191 (321)
+|++.+
T Consensus 395 ~C~I~G 400 (566)
T PLN02713 395 ECDIYG 400 (566)
T ss_pred eeEEec
Confidence 776653
No 43
>PLN02484 probable pectinesterase/pectinesterase inhibitor
Probab=97.20 E-value=0.041 Score=55.94 Aligned_cols=128 Identities=13% Similarity=0.043 Sum_probs=74.1
Q ss_pred chHHHHHHHHHHHhhcCCCccEEEecCceEEEeeeeeecccCCceEEEEcCeEEEEEEcCCeEEecc--EEEeccccccC
Q 047946 41 DDSKAFDTSWREAWNWDGIKGTVLVPPGKYLVSFAEFEGPCKASISFQLQGLLDLFSIDTSLSLAKG--TFHGQGETAWP 118 (321)
Q Consensus 41 ddt~Aiq~Ai~~ac~~~g~g~~v~vP~G~y~~~~l~l~g~~~s~v~l~i~G~l~~i~~~~ni~I~GG--~idG~G~~~w~ 118 (321)
-|-..||+||+++-......-+|+|.+|+|.-..+.+. ..+.+++|+.+|.= ...|+|+ ..++.+
T Consensus 282 G~f~TIq~Ai~a~P~~~~~r~vI~Ik~G~Y~E~~v~i~-~~k~ni~l~G~g~~-------~TiIt~~~~~~~~~~----- 348 (587)
T PLN02484 282 GTFKTISEAIKKAPEHSSRRTIIYVKAGRYEENNLKVG-RKKTNLMFIGDGKG-------KTVITGGKSIFDNLT----- 348 (587)
T ss_pred CCcccHHHHHHhccccCCCcEEEEEeCCEEEEEEEEEC-CCCceEEEEecCCC-------CeEEecCCcccCCCc-----
Confidence 35778999995543322104578999999986435443 12256777666520 1223331 111111
Q ss_pred CccCCCCCCCCCCeeEEEEeecceEEeceeEeCCCC----eEEEEE-ceeeEEEEeeEEecCCCC----cccEEEEeEEE
Q 047946 119 LNQCHKNSDCQLPTPIRFNFLNDSTITGIKSVDSRY----FHINIL-GCYNLKLNDLKITAHADS----SKDILVSEVFC 189 (321)
Q Consensus 119 ~~~~~~~~~~~rp~~i~~~~~~nv~I~~iti~ns~~----~~i~~~-~s~nv~i~nv~I~~~~~~----s~nI~I~n~~~ 189 (321)
.--..-.....+++..+||++.|+.. -.+.+. ..+...+.+|++.+..|- +..-.+++|++
T Consensus 349 ----------t~~saT~~v~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~fy~C~~~G~QDTLy~~~~Rqyy~~C~I 418 (587)
T PLN02484 349 ----------TFHTASFAATGAGFIARDMTFENWAGPAKHQAVALRVGADHAVVYRCNIIGYQDTLYVHSNRQFFRECDI 418 (587)
T ss_pred ----------ccceEEEEEEcCCEEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeeEeccCcccccCCCcEEEEecEE
Confidence 01123344567899999999999853 122222 467888999999987764 33345666665
Q ss_pred cC
Q 047946 190 GP 191 (321)
Q Consensus 190 ~~ 191 (321)
.+
T Consensus 419 ~G 420 (587)
T PLN02484 419 YG 420 (587)
T ss_pred Ee
Confidence 53
No 44
>PLN02671 pectinesterase
Probab=97.18 E-value=0.039 Score=52.59 Aligned_cols=133 Identities=11% Similarity=0.057 Sum_probs=73.2
Q ss_pred chHHHHHHHHHHHhhcCCCccEEEecCceEEEeeeeeecccCCceEEEEcCeEEEEEEcCCeEEec----cEEEeccccc
Q 047946 41 DDSKAFDTSWREAWNWDGIKGTVLVPPGKYLVSFAEFEGPCKASISFQLQGLLDLFSIDTSLSLAK----GTFHGQGETA 116 (321)
Q Consensus 41 ddt~Aiq~Ai~~ac~~~g~g~~v~vP~G~y~~~~l~l~g~~~s~v~l~i~G~l~~i~~~~ni~I~G----G~idG~G~~~ 116 (321)
-|-.-||+||+++-......-+|+|.+|+|.- .+.+.- .+.+++|+.+|.-. ++..|+. +..+.+|..|
T Consensus 69 Gdf~TIQ~AIdavP~~~~~~~~I~Ik~GvY~E-kV~I~~-~k~~Itl~G~g~~~-----~~TvIt~~~~a~~~~~~g~~~ 141 (359)
T PLN02671 69 GDSLTVQGAVDMVPDYNSQRVKIYILPGIYRE-KVLVPK-SKPYISFIGNESRA-----GDTVISWNDKASDLDSNGFEL 141 (359)
T ss_pred CCccCHHHHHHhchhcCCccEEEEEeCceEEE-EEEECC-CCCeEEEEecCCCC-----CCEEEEcCCcccccccCCccc
Confidence 45779999996543322103589999999974 444421 12566666554100 0112222 0111111111
Q ss_pred cCCccCCCCCCCCCCeeEEEEeecceEEeceeEeCCCC--------eEEEE-EceeeEEEEeeEEecCCCC----cccEE
Q 047946 117 WPLNQCHKNSDCQLPTPIRFNFLNDSTITGIKSVDSRY--------FHINI-LGCYNLKLNDLKITAHADS----SKDIL 183 (321)
Q Consensus 117 w~~~~~~~~~~~~rp~~i~~~~~~nv~I~~iti~ns~~--------~~i~~-~~s~nv~i~nv~I~~~~~~----s~nI~ 183 (321)
......-.....+++..+||++.|+.. -.+.+ ...+.+.+.+|++.+..|- .-.-.
T Consensus 142 -----------gT~~SaTv~v~a~~F~a~nitfeNt~~~~~g~~~~QAVALrv~gDra~f~~c~f~G~QDTLy~~~gR~y 210 (359)
T PLN02671 142 -----------GTYRTASVTIESDYFCATGITFENTVVAEPGGQGMQAVALRISGDKAFFYKVRVLGAQDTLLDETGSHY 210 (359)
T ss_pred -----------cceeeEEEEEECCceEEEeeEEEcCCCCCCCCCCccEEEEEEcCccEEEEcceEeccccccEeCCCcEE
Confidence 011223344567899999999999831 12222 2468899999999987764 33456
Q ss_pred EEeEEEcC
Q 047946 184 VSEVFCGP 191 (321)
Q Consensus 184 I~n~~~~~ 191 (321)
++||++.+
T Consensus 211 f~~CyIeG 218 (359)
T PLN02671 211 FYQCYIQG 218 (359)
T ss_pred EEecEEEE
Confidence 66666653
No 45
>PLN02634 probable pectinesterase
Probab=97.16 E-value=0.053 Score=51.66 Aligned_cols=131 Identities=12% Similarity=0.048 Sum_probs=71.9
Q ss_pred chHHHHHHHHHHHhhcCCCccEEEecCceEEEeeeeeecccCCceEEEEcCeEEEEEEcCCeEEec----cEEEeccccc
Q 047946 41 DDSKAFDTSWREAWNWDGIKGTVLVPPGKYLVSFAEFEGPCKASISFQLQGLLDLFSIDTSLSLAK----GTFHGQGETA 116 (321)
Q Consensus 41 ddt~Aiq~Ai~~ac~~~g~g~~v~vP~G~y~~~~l~l~g~~~s~v~l~i~G~l~~i~~~~ni~I~G----G~idG~G~~~ 116 (321)
-|-..||+||+++........+|+|-+|+|.- .+.+.- .+.+++|+.+|.= ...|+. +....+|..+
T Consensus 66 Gdf~TIQaAIda~P~~~~~r~vI~Ik~GvY~E-kV~Ip~-~k~~ItL~G~g~~-------~TiIt~~~~a~~~~~~g~~~ 136 (359)
T PLN02634 66 GDFRSVQDAVDSVPKNNTMSVTIKINAGFYRE-KVVVPA-TKPYITFQGAGRD-------VTAIEWHDRASDRGANGQQL 136 (359)
T ss_pred CCccCHHHHHhhCcccCCccEEEEEeCceEEE-EEEEcC-CCCeEEEEecCCC-------ceEEEecccccccCCCCccc
Confidence 36789999996543322103578999999974 444421 1256777766520 011111 0000011110
Q ss_pred cCCccCCCCCCCCCCeeEEEEeecceEEeceeEeCCCC---------eEEEE-EceeeEEEEeeEEecCCCC----cccE
Q 047946 117 WPLNQCHKNSDCQLPTPIRFNFLNDSTITGIKSVDSRY---------FHINI-LGCYNLKLNDLKITAHADS----SKDI 182 (321)
Q Consensus 117 w~~~~~~~~~~~~rp~~i~~~~~~nv~I~~iti~ns~~---------~~i~~-~~s~nv~i~nv~I~~~~~~----s~nI 182 (321)
-. ...++ .....+++..+||+++|+.. -.+.+ ...+...+.+|++.+..|- ...-
T Consensus 137 ~T---------~~SaT--v~V~a~~F~a~niTf~Nta~~~~~g~~~~QAVAl~v~gDra~f~~C~f~G~QDTL~~~~gR~ 205 (359)
T PLN02634 137 RT---------YQTAS--VTVYANYFTARNISFKNTAPAPMPGMQGWQAVAFRISGDKAFFFGCGFYGAQDTLCDDAGRH 205 (359)
T ss_pred cc---------ccceE--EEEECCCeEEEeCeEEeCCccCCCCCCCCceEEEEecCCcEEEEEeEEecccceeeeCCCCE
Confidence 00 00122 23356799999999999842 11222 2467889999999987764 3446
Q ss_pred EEEeEEEcC
Q 047946 183 LVSEVFCGP 191 (321)
Q Consensus 183 ~I~n~~~~~ 191 (321)
.++||++.+
T Consensus 206 yf~~CyIeG 214 (359)
T PLN02634 206 YFKECYIEG 214 (359)
T ss_pred EEEeeEEcc
Confidence 666676654
No 46
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3.1.1.11 from EC (pectin methylesterase) catalyses the de-esterification of pectin into pectate and methanol. Pectin is one of the main components of the plant cell wall. In plants, pectinesterase plays an important role in cell wall metabolism during fruit ripening. In plant bacterial pathogens such as Erwinia carotovora and in fungal pathogens such as Aspergillus niger, pectinesterase is involved in maceration and soft-rotting of plant tissue. Plant pectinesterases are regulated by pectinesterase inhibitors, which are ineffective against microbial enzymes []. Prokaryotic and eukaryotic pectinesterases share a few regions of sequence similarity. The crystal structure of pectinesterase from Erwinia chrysanthemi revealed a beta-helix structure similar to that found in pectinolytic enzymes, though it is different from most structures of esterases []. The putative catalytic residues are in a similar location to those of the active site and substrate-binding cleft of pectate lyase.; GO: 0030599 pectinesterase activity, 0042545 cell wall modification, 0005618 cell wall; PDB: 1QJV_B 1XG2_A 1GQ8_A 2NTQ_A 2NTP_A 2NT9_A 2NT6_B 2NSP_B 2NTB_A 2NST_A ....
Probab=97.15 E-value=0.0034 Score=58.51 Aligned_cols=128 Identities=12% Similarity=0.087 Sum_probs=64.1
Q ss_pred chHHHHHHHHHHHhhcCCCccEEEecCceEEEeeeeeecccCCceEEEEcCeEEEEEEcCCeEEeccEEEeccccccCCc
Q 047946 41 DDSKAFDTSWREAWNWDGIKGTVLVPPGKYLVSFAEFEGPCKASISFQLQGLLDLFSIDTSLSLAKGTFHGQGETAWPLN 120 (321)
Q Consensus 41 ddt~Aiq~Ai~~ac~~~g~g~~v~vP~G~y~~~~l~l~g~~~s~v~l~i~G~l~~i~~~~ni~I~GG~idG~G~~~w~~~ 120 (321)
-|-..||+||+++.......-+|+|.+|+|.- .+.+.. -+.+++|..+|.- .. +|-++.. +.+.
T Consensus 10 gdf~TIq~Aida~p~~~~~~~~I~I~~G~Y~E-~V~i~~-~k~~v~l~G~~~~-------~t-----iI~~~~~-~~~~- 73 (298)
T PF01095_consen 10 GDFTTIQAAIDAAPDNNTSRYTIFIKPGTYRE-KVTIPR-SKPNVTLIGEGRD-------KT-----IITGNDN-AADG- 73 (298)
T ss_dssp SSBSSHHHHHHHS-SSSSS-EEEEE-SEEEE---EEE-S-TSTTEEEEES-TT-------TE-----EEEE----TTTB-
T ss_pred CCccCHHHHHHhchhcCCceEEEEEeCeeEcc-ccEecc-ccceEEEEecCCC-------ce-----EEEEecc-cccc-
Confidence 46778999996544322104589999999983 455541 1146777666410 11 2222111 1000
Q ss_pred cCCCCCCCCCCeeEEEEeecceEEeceeEeCCCCe------EEEEEceeeEEEEeeEEecCCCC----cccEEEEeEEEc
Q 047946 121 QCHKNSDCQLPTPIRFNFLNDSTITGIKSVDSRYF------HINILGCYNLKLNDLKITAHADS----SKDILVSEVFCG 190 (321)
Q Consensus 121 ~~~~~~~~~rp~~i~~~~~~nv~I~~iti~ns~~~------~i~~~~s~nv~i~nv~I~~~~~~----s~nI~I~n~~~~ 190 (321)
.+....++ + ....+++.+++|++.|+... .+.+ ..+...+.+|++.+..|- .....++||++.
T Consensus 74 ----~~t~~saT-~-~v~a~~f~~~nit~~Nt~g~~~~qAvAl~~-~~d~~~f~~c~~~g~QDTL~~~~~r~y~~~c~Ie 146 (298)
T PF01095_consen 74 ----GGTFRSAT-F-SVNADDFTAENITFENTAGPSGGQAVALRV-SGDRAAFYNCRFLGYQDTLYANGGRQYFKNCYIE 146 (298)
T ss_dssp -----HCGGC-S-E-EE-STT-EEEEEEEEEHCSGSG----SEEE-T-TSEEEEEEEEE-STT-EEE-SSEEEEES-EEE
T ss_pred ----cccccccc-c-cccccceeeeeeEEecCCCCcccceeeeee-cCCcEEEEEeEEccccceeeeccceeEEEeeEEE
Confidence 00000122 2 33578999999999997432 1332 567889999999988764 344555666654
Q ss_pred C
Q 047946 191 P 191 (321)
Q Consensus 191 ~ 191 (321)
+
T Consensus 147 G 147 (298)
T PF01095_consen 147 G 147 (298)
T ss_dssp E
T ss_pred e
Confidence 3
No 47
>PLN02201 probable pectinesterase/pectinesterase inhibitor
Probab=97.15 E-value=0.05 Score=54.41 Aligned_cols=126 Identities=10% Similarity=-0.006 Sum_probs=73.4
Q ss_pred chHHHHHHHHHHHhhcC-CCccEEEecCceEEEeeeeeecccCCceEEEEcCeEEEEEEcCCeEEec--cEEEecccccc
Q 047946 41 DDSKAFDTSWREAWNWD-GIKGTVLVPPGKYLVSFAEFEGPCKASISFQLQGLLDLFSIDTSLSLAK--GTFHGQGETAW 117 (321)
Q Consensus 41 ddt~Aiq~Ai~~ac~~~-g~g~~v~vP~G~y~~~~l~l~g~~~s~v~l~i~G~l~~i~~~~ni~I~G--G~idG~G~~~w 117 (321)
-|-..||+||+++.... . .-+|+|.+|+|.- .+.+.. .+.+++|+.+|.= ...|++ ...||-+
T Consensus 216 G~f~TIq~Ai~a~P~~~~~-r~vI~Ik~GvY~E-~V~I~~-~k~~i~l~G~g~~-------~TiIt~~~~~~~g~~---- 281 (520)
T PLN02201 216 GNFTTIMDAVLAAPDYSTK-RYVIYIKKGVYLE-NVEIKK-KKWNIMMVGDGID-------ATVITGNRSFIDGWT---- 281 (520)
T ss_pred CCccCHHHHHHhchhcCCC-cEEEEEeCceeEE-EEEecC-CCceEEEEecCCC-------CcEEEeCCccCCCCc----
Confidence 46789999996543322 2 4689999999973 444431 1246777666520 122233 1111110
Q ss_pred CCccCCCCCCCCCCeeEEEEeecceEEeceeEeCCCC----eEEEE-EceeeEEEEeeEEecCCCC----cccEEEEeEE
Q 047946 118 PLNQCHKNSDCQLPTPIRFNFLNDSTITGIKSVDSRY----FHINI-LGCYNLKLNDLKITAHADS----SKDILVSEVF 188 (321)
Q Consensus 118 ~~~~~~~~~~~~rp~~i~~~~~~nv~I~~iti~ns~~----~~i~~-~~s~nv~i~nv~I~~~~~~----s~nI~I~n~~ 188 (321)
.--..-.....+++..+||++.|+.. -.+.+ ...+...+.+|++.+..|- ...-..++|+
T Consensus 282 -----------T~~SAT~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~f~G~QDTLy~~~~Rqyy~~C~ 350 (520)
T PLN02201 282 -----------TFRSATFAVSGRGFIARDITFQNTAGPEKHQAVALRSDSDLSVFYRCAMRGYQDTLYTHTMRQFYRECR 350 (520)
T ss_pred -----------ccceEEEEEECCCeEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeeeeccCCeeEeCCCCEEEEeeE
Confidence 00123344567899999999999853 12222 2467888999999987764 3334556666
Q ss_pred EcC
Q 047946 189 CGP 191 (321)
Q Consensus 189 ~~~ 191 (321)
+.+
T Consensus 351 I~G 353 (520)
T PLN02201 351 ITG 353 (520)
T ss_pred Eee
Confidence 553
No 48
>PLN02916 pectinesterase family protein
Probab=97.14 E-value=0.036 Score=55.01 Aligned_cols=126 Identities=8% Similarity=-0.013 Sum_probs=72.9
Q ss_pred chHHHHHHHHHHHhhc----CCCccEEEecCceEEEeeeeeecccCCceEEEEcCeEEEEEEcCCeEEec--cEEEeccc
Q 047946 41 DDSKAFDTSWREAWNW----DGIKGTVLVPPGKYLVSFAEFEGPCKASISFQLQGLLDLFSIDTSLSLAK--GTFHGQGE 114 (321)
Q Consensus 41 ddt~Aiq~Ai~~ac~~----~g~g~~v~vP~G~y~~~~l~l~g~~~s~v~l~i~G~l~~i~~~~ni~I~G--G~idG~G~ 114 (321)
-|-.-||+||+++... .. .-+|+|.+|+|.- .+.+.. .+.+++|+.+|.= ...|++ ..-||.+
T Consensus 197 G~f~TIq~AI~a~P~~~~~~~~-r~vI~Ik~GvY~E-~V~I~~-~k~~i~l~G~g~~-------~TiIt~~~~~~~g~~- 265 (502)
T PLN02916 197 GTHRTINQALAALSRMGKSRTN-RVIIYVKAGVYNE-KVEIDR-HMKNVMFVGDGMD-------KTIITNNRNVPDGST- 265 (502)
T ss_pred CCccCHHHHHHhcccccCCCCc-eEEEEEeCceeeE-EEEecC-CCceEEEEecCCC-------CcEEEeCCccCCCCc-
Confidence 3577899999654421 12 3579999999983 444431 1246777666520 122232 1111110
Q ss_pred cccCCccCCCCCCCCCCeeEEEEeecceEEeceeEeCCCCe----EEEEE-ceeeEEEEeeEEecCCCC----cccEEEE
Q 047946 115 TAWPLNQCHKNSDCQLPTPIRFNFLNDSTITGIKSVDSRYF----HINIL-GCYNLKLNDLKITAHADS----SKDILVS 185 (321)
Q Consensus 115 ~~w~~~~~~~~~~~~rp~~i~~~~~~nv~I~~iti~ns~~~----~i~~~-~s~nv~i~nv~I~~~~~~----s~nI~I~ 185 (321)
..-..-.....+++..+||++.|+... .+.+. ..+...+.+|++.+..|- +..-.++
T Consensus 266 --------------T~~SAT~~v~~~~F~A~nitf~Ntag~~~~QAVALrv~~D~a~fy~C~f~G~QDTLy~~~~Rqyy~ 331 (502)
T PLN02916 266 --------------TYSSATFGVSGDGFWARDITFENTAGPHKHQAVALRVSSDLSVFYRCSFKGYQDTLFVHSLRQFYR 331 (502)
T ss_pred --------------ceeeEEEEEECCCEEEEeeEEEeCCCCCCCceEEEEEcCCcEEEEeeeEeccCceeEeCCCCEEEE
Confidence 111234445678999999999998432 22222 467888999999987764 3335566
Q ss_pred eEEEcC
Q 047946 186 EVFCGP 191 (321)
Q Consensus 186 n~~~~~ 191 (321)
+|++.+
T Consensus 332 ~C~I~G 337 (502)
T PLN02916 332 DCHIYG 337 (502)
T ss_pred ecEEec
Confidence 666653
No 49
>PLN02176 putative pectinesterase
Probab=97.12 E-value=0.053 Score=51.33 Aligned_cols=125 Identities=13% Similarity=0.044 Sum_probs=69.3
Q ss_pred chHHHHHHHHHHHhhcCCCccEEEecCceEEEeeeeeecccCCceEEEEcCeEEEEEEcCCeEEeccEEEeccccccCCc
Q 047946 41 DDSKAFDTSWREAWNWDGIKGTVLVPPGKYLVSFAEFEGPCKASISFQLQGLLDLFSIDTSLSLAKGTFHGQGETAWPLN 120 (321)
Q Consensus 41 ddt~Aiq~Ai~~ac~~~g~g~~v~vP~G~y~~~~l~l~g~~~s~v~l~i~G~l~~i~~~~ni~I~GG~idG~G~~~w~~~ 120 (321)
-|-..||+||+++-......-+|+|++|+|.- .+.+.- .|.+++|+.+|.- ...|+ .+ ++. ...
T Consensus 49 Gdf~TIq~AIdavP~~~~~~~~I~Ik~GvY~E-kV~Ip~-~k~~vtl~G~g~~-------~TiIt---~~-~~~--~t~- 112 (340)
T PLN02176 49 RYFKTVQSAIDSIPLQNQNWIRILIQNGIYRE-KVTIPK-EKGYIYMQGKGIE-------KTIIA---YG-DHQ--ATD- 112 (340)
T ss_pred CCccCHHHHHhhchhcCCceEEEEECCcEEEE-EEEECC-CCccEEEEEcCCC-------ceEEE---Ee-CCc--ccc-
Confidence 35789999996543322103478899999984 444421 1257777766520 00111 00 000 000
Q ss_pred cCCCCCCCCCCeeEEEEeecceEEeceeEeCCCC----------eEEEE-EceeeEEEEeeEEecCCCC----cccEEEE
Q 047946 121 QCHKNSDCQLPTPIRFNFLNDSTITGIKSVDSRY----------FHINI-LGCYNLKLNDLKITAHADS----SKDILVS 185 (321)
Q Consensus 121 ~~~~~~~~~rp~~i~~~~~~nv~I~~iti~ns~~----------~~i~~-~~s~nv~i~nv~I~~~~~~----s~nI~I~ 185 (321)
..++ +. ...+++..+||++.|+.. -.+.+ ...+...+.+|++.+..|- ...-.++
T Consensus 113 --------~saT-~~-v~a~~F~a~nlT~~Nt~~~~~~~~~~~~QAVAl~v~gDr~~f~~C~f~G~QDTLy~~~gRqyf~ 182 (340)
T PLN02176 113 --------TSAT-FT-SYASNIIITGITFKNTYNIASNSSRPTKPAVAARMLGDKYAIIDSSFDGFQDTLFDGKGRHYYK 182 (340)
T ss_pred --------cceE-EE-EECCCEEEEeeEEEeCCCccCCCCCCccceEEEEecCccEEEEccEEecccceeEeCCcCEEEE
Confidence 0122 22 357899999999998742 12222 2467788889998887653 3345555
Q ss_pred eEEEcC
Q 047946 186 EVFCGP 191 (321)
Q Consensus 186 n~~~~~ 191 (321)
+|++.+
T Consensus 183 ~CyIeG 188 (340)
T PLN02176 183 RCVISG 188 (340)
T ss_pred ecEEEe
Confidence 665553
No 50
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=97.12 E-value=0.031 Score=54.17 Aligned_cols=186 Identities=17% Similarity=0.178 Sum_probs=80.3
Q ss_pred hHHHHHHHHHHHhhcCCCccEEEecCceEEEeeeeeecc--cCCceEEEEc--C-e-EEE---EEEcC-CeEEeccEE-E
Q 047946 42 DSKAFDTSWREAWNWDGIKGTVLVPPGKYLVSFAEFEGP--CKASISFQLQ--G-L-LDL---FSIDT-SLSLAKGTF-H 110 (321)
Q Consensus 42 dt~Aiq~Ai~~ac~~~g~g~~v~vP~G~y~~~~l~l~g~--~~s~v~l~i~--G-~-l~~---i~~~~-ni~I~GG~i-d 110 (321)
+.+++|+|++.|.+ |.+|+++.|+|.-..+.+++. -..+++|.-+ | + |.. +.+.+ .++|.|-.+ +
T Consensus 3 s~~~lq~Ai~~a~p----GD~I~L~~Gty~~~~i~~~~~GT~~~PItl~Ae~~G~vvi~G~s~l~i~G~yl~v~GL~F~n 78 (425)
T PF14592_consen 3 SVAELQSAIDNAKP----GDTIVLADGTYKDVEIVFKGSGTAAKPITLRAENPGKVVITGESNLRISGSYLVVSGLKFKN 78 (425)
T ss_dssp SHHHHHHHHHH--T----T-EEEE-SEEEET-EEEE-S--BTTB-EEEEESSTTSEEEEES-EEEE-SSSEEEES-EEEE
T ss_pred CHHHHHHHHHhCCC----CCEEEECCceeecceEEEEecccCCCCEEEEecCCCeEEEecceeEEEEeeeEEEeCeEEec
Confidence 57899999965433 579999999998445666542 2245788776 5 2 222 77777 788877333 4
Q ss_pred ecccc-ccCCccCCCCCCCCCCeeEEEEeecceEEeceeEeCC-----C---CeEE-EEEceeeEEEEeeEEecCCCC--
Q 047946 111 GQGET-AWPLNQCHKNSDCQLPTPIRFNFLNDSTITGIKSVDS-----R---YFHI-NILGCYNLKLNDLKITAHADS-- 178 (321)
Q Consensus 111 G~G~~-~w~~~~~~~~~~~~rp~~i~~~~~~nv~I~~iti~ns-----~---~~~i-~~~~s~nv~i~nv~I~~~~~~-- 178 (321)
|.... -|-.. |+..- -..+.+.++.+..+.+- . .|-. +....++-+|+++.+.+-...
T Consensus 79 g~~~~~~vi~f---------r~~~~-~~~a~~~RlT~~vi~~fn~~~~~~~~~wv~~~~l~G~~NrvDhn~F~gK~~~G~ 148 (425)
T PF14592_consen 79 GYTPTGAVISF---------RNGGD-ASYANHCRLTNCVIDDFNNPDREESDNWVTIYSLYGKHNRVDHNYFQGKTNRGP 148 (425)
T ss_dssp E---TTT--TT---------S--SE-EE-SSS-EEES-EEES--SS-S-SEEE---TT-----S-EEES-EEE---SSS-
T ss_pred CCCCCCceEEe---------ecCCC-cceecceEEEeEEeeccCCcccccCceEEEEEEeeccCceEEccEeeccccCCc
Confidence 43211 01000 11111 12355666666666542 1 1331 013456777888887753221
Q ss_pred --------------cccEEEEeEEEcC-----C---CeeEEeecCCCCCCCcEEEEEEEeeEEEeccc---eEEEEeeCC
Q 047946 179 --------------SKDILVSEVFCGP-----G---QGISVGSLGKGIKDEEVVGLTVRNCTFTCTSN---GVRVKTWPD 233 (321)
Q Consensus 179 --------------s~nI~I~n~~~~~-----~---~GI~iGS~G~~~~~~~v~nI~v~n~~i~~~~~---gi~ikt~~g 233 (321)
..+-+|++++|.+ + ..|.||.-. ..-.-.+.+|+++.|.+++- -|.+|+..
T Consensus 149 ~l~V~~~~~~~~~~~~~h~IdhNyF~~rp~~g~NggEtIRiG~S~---~S~~~s~t~Ve~NlFe~cdGE~EIISvKS~~- 224 (425)
T PF14592_consen 149 TLAVRVILNGSQSIANYHRIDHNYFGPRPPKGGNGGETIRIGTSH---SSMSDSNTTVENNLFERCDGEVEIISVKSSD- 224 (425)
T ss_dssp SEEE--S--SS-------EEES-EEE-E---SSS---SEEE-SST---T-B-----EEES-EEEEE-SSSEEEEEESBT-
T ss_pred EEEEEecccCccccccCceEEeccccccCCCCCCCceeEEEeccc---ccccccceeeecchhhhcCCceeEEEeecCC-
Confidence 3355788888861 2 248888532 22334788888988888653 34555432
Q ss_pred CCceeeeCcEEeeeE
Q 047946 234 SHIGIASNFTFEDIV 248 (321)
Q Consensus 234 ~~~g~v~nIt~~ni~ 248 (321)
-.+++-||.++.
T Consensus 225 ---N~ir~Ntf~es~ 236 (425)
T PF14592_consen 225 ---NTIRNNTFRESQ 236 (425)
T ss_dssp ----EEES-EEES-S
T ss_pred ---ceEeccEEEecc
Confidence 345555555443
No 51
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=97.11 E-value=0.012 Score=52.68 Aligned_cols=106 Identities=20% Similarity=0.229 Sum_probs=61.3
Q ss_pred EEEEeecceEEeceeEeCCCCeEEEEEceeeEEEEeeEEecCCCC-----cccEEEEeEEEcC-CCeeEEeecCCCCCCC
Q 047946 134 IRFNFLNDSTITGIKSVDSRYFHINILGCYNLKLNDLKITAHADS-----SKDILVSEVFCGP-GQGISVGSLGKGIKDE 207 (321)
Q Consensus 134 i~~~~~~nv~I~~iti~ns~~~~i~~~~s~nv~i~nv~I~~~~~~-----s~nI~I~n~~~~~-~~GI~iGS~G~~~~~~ 207 (321)
+.+..+.+++|++.++.+. ..++++..|++.+|++.++...... +.+.+|+++++.. ..||.+..
T Consensus 38 i~~~~s~~~~I~~n~i~~~-~~GI~~~~s~~~~i~~n~i~~n~~Gi~l~~s~~~~I~~N~i~~n~~GI~l~~-------- 108 (236)
T PF05048_consen 38 IYVENSDNNTISNNTISNN-RYGIHLMGSSNNTIENNTISNNGYGIYLMGSSNNTISNNTISNNGYGIYLYG-------- 108 (236)
T ss_pred EEEEEcCCeEEEeeEEECC-CeEEEEEccCCCEEEeEEEEccCCCEEEEcCCCcEEECCEecCCCceEEEee--------
Confidence 4556666677777766666 6667777777777777776665433 4444666666654 23555532
Q ss_pred cEEEEEEEeeEEEeccceEEEEeeCCCCceeeeCcEEeeeEEecC-CccEE
Q 047946 208 EVVGLTVRNCTFTCTSNGVRVKTWPDSHIGIASNFTFEDIVMNNV-ENPIV 257 (321)
Q Consensus 208 ~v~nI~v~n~~i~~~~~gi~ikt~~g~~~g~v~nIt~~ni~~~~v-~~~i~ 257 (321)
..+.+|+++++.+...||++... .+.++++.++.+- ..+|.
T Consensus 109 -s~~~~I~~N~i~~~~~GI~l~~s--------~~n~I~~N~i~~n~~~Gi~ 150 (236)
T PF05048_consen 109 -SSNNTISNNTISNNGYGIYLSSS--------SNNTITGNTISNNTDYGIY 150 (236)
T ss_pred -CCceEEECcEEeCCCEEEEEEeC--------CCCEEECeEEeCCCccceE
Confidence 13355666666666666666522 3444444445444 44555
No 52
>PLN02301 pectinesterase/pectinesterase inhibitor
Probab=97.11 E-value=0.048 Score=54.92 Aligned_cols=127 Identities=13% Similarity=0.077 Sum_probs=75.3
Q ss_pred chHHHHHHHHHHHhhcCCCccEEEecCceEEEeeeeeecccCCceEEEEcCeEEEEEEcCCeEEec--cEEEeccccccC
Q 047946 41 DDSKAFDTSWREAWNWDGIKGTVLVPPGKYLVSFAEFEGPCKASISFQLQGLLDLFSIDTSLSLAK--GTFHGQGETAWP 118 (321)
Q Consensus 41 ddt~Aiq~Ai~~ac~~~g~g~~v~vP~G~y~~~~l~l~g~~~s~v~l~i~G~l~~i~~~~ni~I~G--G~idG~G~~~w~ 118 (321)
-|-..||+||+++-......-+|+|.+|+|.- .+.+.- .+.+++|+.+|.= .-.|+| -..||.+
T Consensus 246 G~f~TIq~Ai~a~P~~~~~r~vI~Ik~G~Y~E-~V~i~~-~k~~i~l~G~g~~-------~TiIt~~~~~~dg~~----- 311 (548)
T PLN02301 246 GKYKTVKEAVASAPDNSKTRYVIYVKKGTYKE-NVEIGK-KKKNLMLVGDGMD-------STIITGSLNVIDGST----- 311 (548)
T ss_pred CCcccHHHHHHhhhhcCCceEEEEEeCceeeE-EEEecC-CCceEEEEecCCC-------CcEEEeCCccCCCCC-----
Confidence 35789999996544322103579999999974 444431 1256777666520 112232 1112111
Q ss_pred CccCCCCCCCCCCeeEEEEeecceEEeceeEeCCCCe----EEEE-EceeeEEEEeeEEecCCCC----cccEEEEeEEE
Q 047946 119 LNQCHKNSDCQLPTPIRFNFLNDSTITGIKSVDSRYF----HINI-LGCYNLKLNDLKITAHADS----SKDILVSEVFC 189 (321)
Q Consensus 119 ~~~~~~~~~~~rp~~i~~~~~~nv~I~~iti~ns~~~----~i~~-~~s~nv~i~nv~I~~~~~~----s~nI~I~n~~~ 189 (321)
...........+++..+|++++|+... .+.+ ..++...+.+|+|.+..|- +..-..++|++
T Consensus 312 ----------T~~SaT~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G~QDTLy~~~~Rqyy~~C~I 381 (548)
T PLN02301 312 ----------TFRSATVAAVGDGFIAQDIWFQNTAGPEKHQAVALRVSADQAVINRCRIDAYQDTLYAHSLRQFYRDSYI 381 (548)
T ss_pred ----------ceeeEEEEEECCceEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeeeeeccccceecCCcEEEEeeEE
Confidence 111234445678999999999998542 2222 2568899999999998764 33456777776
Q ss_pred cC
Q 047946 190 GP 191 (321)
Q Consensus 190 ~~ 191 (321)
.+
T Consensus 382 ~G 383 (548)
T PLN02301 382 TG 383 (548)
T ss_pred Ee
Confidence 64
No 53
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional
Probab=97.07 E-value=0.044 Score=55.17 Aligned_cols=126 Identities=11% Similarity=0.035 Sum_probs=74.4
Q ss_pred chHHHHHHHHHHHhhcC----CCccEEEecCceEEEeeeeeecccCCceEEEEcCeEEEEEEcCCeEEec--cEEEeccc
Q 047946 41 DDSKAFDTSWREAWNWD----GIKGTVLVPPGKYLVSFAEFEGPCKASISFQLQGLLDLFSIDTSLSLAK--GTFHGQGE 114 (321)
Q Consensus 41 ddt~Aiq~Ai~~ac~~~----g~g~~v~vP~G~y~~~~l~l~g~~~s~v~l~i~G~l~~i~~~~ni~I~G--G~idG~G~ 114 (321)
-|-.-||+||+++-... + .-+|||.+|+|.- .+.+.- .+.+++|+.+|. +...|+| -..||
T Consensus 233 G~f~TI~~Av~a~p~~~~~~~~-r~vI~vk~G~Y~E-~V~i~~-~k~~i~l~G~g~-------~~tiIt~~~~~~dg--- 299 (538)
T PLN03043 233 DNFTTITDAIAAAPNNSKPEDG-YFVIYAREGYYEE-YVVVPK-NKKNIMLIGDGI-------NKTIITGNHSVVDG--- 299 (538)
T ss_pred CCCcCHHHHHHhccccCCCCcc-eEEEEEcCeeeEE-EEEeCC-CCCcEEEEecCC-------CCeEEEeCCccCCC---
Confidence 45779999995443321 1 2479999999974 444421 125677766652 0223333 11222
Q ss_pred cccCCccCCCCCCCCCCeeEEEEeecceEEeceeEeCCCCe----EEEE-EceeeEEEEeeEEecCCCC----cccEEEE
Q 047946 115 TAWPLNQCHKNSDCQLPTPIRFNFLNDSTITGIKSVDSRYF----HINI-LGCYNLKLNDLKITAHADS----SKDILVS 185 (321)
Q Consensus 115 ~~w~~~~~~~~~~~~rp~~i~~~~~~nv~I~~iti~ns~~~----~i~~-~~s~nv~i~nv~I~~~~~~----s~nI~I~ 185 (321)
|.- ..........+++..+||+++|+... .+.+ ...+...+.+|+|.+..|- +..-..+
T Consensus 300 --~~T----------~~saT~~v~~~~F~a~~it~~Ntag~~~~QAvAlrv~~D~~~f~~C~~~gyQDTLy~~~~rq~y~ 367 (538)
T PLN03043 300 --WTT----------FNSSTFAVSGERFVAVDVTFRNTAGPEKHQAVALRNNADLSTFYRCSFEGYQDTLYVHSLRQFYR 367 (538)
T ss_pred --Ccc----------ccceEEEEECCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeEEeccCcccccCCCcEEEE
Confidence 110 11233445678999999999998542 2222 2567788999999988764 3345666
Q ss_pred eEEEcC
Q 047946 186 EVFCGP 191 (321)
Q Consensus 186 n~~~~~ 191 (321)
||++.+
T Consensus 368 ~c~I~G 373 (538)
T PLN03043 368 ECDIYG 373 (538)
T ss_pred eeEEee
Confidence 666653
No 54
>PLN02506 putative pectinesterase/pectinesterase inhibitor
Probab=97.04 E-value=0.047 Score=54.88 Aligned_cols=147 Identities=14% Similarity=0.121 Sum_probs=84.7
Q ss_pred chHHHHHHHHHHHhhcC-CCccEEEecCceEEEeeeeeecccCCceEEEEcCeEEEEEEcCCeEEec-cEEEeccccccC
Q 047946 41 DDSKAFDTSWREAWNWD-GIKGTVLVPPGKYLVSFAEFEGPCKASISFQLQGLLDLFSIDTSLSLAK-GTFHGQGETAWP 118 (321)
Q Consensus 41 ddt~Aiq~Ai~~ac~~~-g~g~~v~vP~G~y~~~~l~l~g~~~s~v~l~i~G~l~~i~~~~ni~I~G-G~idG~G~~~w~ 118 (321)
-|-..||+||+++-... . .-+|+|.+|+|.-. +.+. ..+.+++|+.+|.= ...|++ ... ..| |.
T Consensus 242 G~f~TIq~Av~a~p~~~~~-r~vI~Vk~GvY~E~-V~I~-~~k~~i~l~G~g~~-------~tiIt~~~~~-~~g---~~ 307 (537)
T PLN02506 242 GHYRTITEAINEAPNHSNR-RYIIYVKKGVYKEN-IDMK-KKKTNIMLVGDGIG-------QTVVTGNRNF-MQG---WT 307 (537)
T ss_pred CCccCHHHHHHhchhcCCC-cEEEEEeCCeeeEE-Eecc-CCCceEEEEEcCCC-------CeEEEeCccc-cCC---CC
Confidence 35778999996544322 2 45899999999743 3332 01256666665420 122233 110 011 00
Q ss_pred CccCCCCCCCCCCeeEEEEeecceEEeceeEeCCCCe----EEEE-EceeeEEEEeeEEecCCCC----cccEEEEeEEE
Q 047946 119 LNQCHKNSDCQLPTPIRFNFLNDSTITGIKSVDSRYF----HINI-LGCYNLKLNDLKITAHADS----SKDILVSEVFC 189 (321)
Q Consensus 119 ~~~~~~~~~~~rp~~i~~~~~~nv~I~~iti~ns~~~----~i~~-~~s~nv~i~nv~I~~~~~~----s~nI~I~n~~~ 189 (321)
..-........+++..+||+++|.... .+.+ ...+.+.+.+|++.+..|- ...-..++|++
T Consensus 308 ----------T~~saT~~v~~~~F~a~nit~~Ntag~~~~QAVAl~v~~D~~~fy~C~~~G~QDTLy~~~~rqyy~~C~I 377 (537)
T PLN02506 308 ----------TFRTATVAVSGRGFIARDITFRNTAGPQNHQAVALRVDSDQSAFYRCSMEGYQDTLYAHSLRQFYRECEI 377 (537)
T ss_pred ----------cccceEEEEEcCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEcceeecccccceecCCceEEEeeEE
Confidence 111233455788999999999998532 1222 2478899999999988764 44467788877
Q ss_pred cCCCeeEEeecCCCCCCCcEEEEEEEeeEEEe
Q 047946 190 GPGQGISVGSLGKGIKDEEVVGLTVRNCTFTC 221 (321)
Q Consensus 190 ~~~~GI~iGS~G~~~~~~~v~nI~v~n~~i~~ 221 (321)
.+.--+-+|. -...++||+|..
T Consensus 378 ~GtVDFIFG~----------a~avfq~C~i~~ 399 (537)
T PLN02506 378 YGTIDFIFGN----------GAAVLQNCKIYT 399 (537)
T ss_pred ecccceEccC----------ceeEEeccEEEE
Confidence 7533344442 235566666663
No 55
>PLN02488 probable pectinesterase/pectinesterase inhibitor
Probab=97.03 E-value=0.093 Score=52.07 Aligned_cols=127 Identities=9% Similarity=0.025 Sum_probs=74.0
Q ss_pred chHHHHHHHHHHHhhcCCCccEEEecCceEEEeeeeeecccCCceEEEEcCeEEEEEEcCCeEEec--cEEEeccccccC
Q 047946 41 DDSKAFDTSWREAWNWDGIKGTVLVPPGKYLVSFAEFEGPCKASISFQLQGLLDLFSIDTSLSLAK--GTFHGQGETAWP 118 (321)
Q Consensus 41 ddt~Aiq~Ai~~ac~~~g~g~~v~vP~G~y~~~~l~l~g~~~s~v~l~i~G~l~~i~~~~ni~I~G--G~idG~G~~~w~ 118 (321)
-|-.-||+||+++-......-+|+|.+|+|.- .+.+.. .|.+++|..+|.= ...|+| ..-||.+
T Consensus 207 G~f~TIq~AI~a~P~~~~~r~vI~Ik~GvY~E-~V~I~~-~k~nItliGdg~~-------~TiIt~n~~~~~g~~----- 272 (509)
T PLN02488 207 GKYNTVNAAIAAAPEHSRKRFVIYIKTGVYDE-IVRIGS-TKPNLTLIGDGQD-------STIITGNLSASNGKR----- 272 (509)
T ss_pred CCccCHHHHHHhchhcCCCcEEEEEeCCeeEE-EEEecC-CCccEEEEecCCC-------ceEEEEcccccCCCC-----
Confidence 46778999996544322104589999999974 444431 1257777666520 112222 1111110
Q ss_pred CccCCCCCCCCCCeeEEEEeecceEEeceeEeCCCCe----EEEE-EceeeEEEEeeEEecCCCC----cccEEEEeEEE
Q 047946 119 LNQCHKNSDCQLPTPIRFNFLNDSTITGIKSVDSRYF----HINI-LGCYNLKLNDLKITAHADS----SKDILVSEVFC 189 (321)
Q Consensus 119 ~~~~~~~~~~~rp~~i~~~~~~nv~I~~iti~ns~~~----~i~~-~~s~nv~i~nv~I~~~~~~----s~nI~I~n~~~ 189 (321)
.--..-.....+++..+||+++|+..- .+.+ ..++...+.+|+|.+..|- +..-.+++|++
T Consensus 273 ----------T~~SATv~v~g~gF~A~nitf~Ntag~~~~QAVALrv~~Dra~Fy~C~f~GyQDTLy~~~~RqyyrdC~I 342 (509)
T PLN02488 273 ----------TFYTATVASNGDGFIGIDMCFRNTAGPAKGPAVALRVSGDMSVIYRCRIEGYQDALYPHRDRQFYRECFI 342 (509)
T ss_pred ----------ceeeEEEEEEcCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEcceeeccCcceeeCCCCEEEEeeEE
Confidence 001233344578899999999998531 2222 2468888999999987764 44456667766
Q ss_pred cC
Q 047946 190 GP 191 (321)
Q Consensus 190 ~~ 191 (321)
.+
T Consensus 343 ~G 344 (509)
T PLN02488 343 TG 344 (509)
T ss_pred ee
Confidence 54
No 56
>PLN02432 putative pectinesterase
Probab=97.00 E-value=0.086 Score=48.99 Aligned_cols=130 Identities=10% Similarity=0.008 Sum_probs=73.4
Q ss_pred hHHHHHHHHHHHhhcCCCccEEEecCceEEEeeeeeecccCCceEEEEcCeEEEEEEcCCeEEeccEEEeccccccCCcc
Q 047946 42 DSKAFDTSWREAWNWDGIKGTVLVPPGKYLVSFAEFEGPCKASISFQLQGLLDLFSIDTSLSLAKGTFHGQGETAWPLNQ 121 (321)
Q Consensus 42 dt~Aiq~Ai~~ac~~~g~g~~v~vP~G~y~~~~l~l~g~~~s~v~l~i~G~l~~i~~~~ni~I~GG~idG~G~~~w~~~~ 121 (321)
|-.-||+||+++........+|+|.+|+|.- .+.+.- -+.+++|+.+|.= +. +|..+.. +..
T Consensus 22 ~f~TIq~Aida~p~~~~~~~~I~I~~G~Y~E-~V~ip~-~k~~itl~G~~~~-------~T-----vI~~~~~--~~~-- 83 (293)
T PLN02432 22 DFRKIQDAIDAVPSNNSQLVFIWVKPGIYRE-KVVVPA-DKPFITLSGTQAS-------NT-----IITWNDG--GDI-- 83 (293)
T ss_pred CccCHHHHHhhccccCCceEEEEEeCceeEE-EEEEec-cCceEEEEEcCCC-------Ce-----EEEecCC--ccc--
Confidence 5789999996544322103578999999963 444420 1156666555410 11 1111100 000
Q ss_pred CCCCCCCCCCeeEEEEeecceEEeceeEeCCCC-----eEEEEEceeeEEEEeeEEecCCCC----cccEEEEeEEEcCC
Q 047946 122 CHKNSDCQLPTPIRFNFLNDSTITGIKSVDSRY-----FHINILGCYNLKLNDLKITAHADS----SKDILVSEVFCGPG 192 (321)
Q Consensus 122 ~~~~~~~~rp~~i~~~~~~nv~I~~iti~ns~~-----~~i~~~~s~nv~i~nv~I~~~~~~----s~nI~I~n~~~~~~ 192 (321)
...++ .....+++.++||+++|+.. -.+. ...+...+.+|++.+..|- ...-.++||++.+.
T Consensus 84 ------~~saT--~~v~a~~f~a~nlt~~Nt~g~~~QAvAl~-v~gDr~~f~~c~~~G~QDTLy~~~gr~yf~~c~I~G~ 154 (293)
T PLN02432 84 ------FESPT--LSVLASDFVGRFLTIQNTFGSSGKAVALR-VAGDRAAFYGCRILSYQDTLLDDTGRHYYRNCYIEGA 154 (293)
T ss_pred ------ccceE--EEEECCCeEEEeeEEEeCCCCCCceEEEE-EcCCcEEEEcceEecccceeEECCCCEEEEeCEEEec
Confidence 01232 34457899999999999833 2222 2467888999999987764 33456677776643
Q ss_pred CeeEEe
Q 047946 193 QGISVG 198 (321)
Q Consensus 193 ~GI~iG 198 (321)
--+-+|
T Consensus 155 VDFIFG 160 (293)
T PLN02432 155 TDFICG 160 (293)
T ss_pred ccEEec
Confidence 233333
No 57
>PLN02416 probable pectinesterase/pectinesterase inhibitor
Probab=96.99 E-value=0.061 Score=54.13 Aligned_cols=127 Identities=13% Similarity=0.012 Sum_probs=75.5
Q ss_pred chHHHHHHHHHHHhhcCCCccEEEecCceEEEeeeeeecccCCceEEEEcCeEEEEEEcCCeEEec-c-EEEeccccccC
Q 047946 41 DDSKAFDTSWREAWNWDGIKGTVLVPPGKYLVSFAEFEGPCKASISFQLQGLLDLFSIDTSLSLAK-G-TFHGQGETAWP 118 (321)
Q Consensus 41 ddt~Aiq~Ai~~ac~~~g~g~~v~vP~G~y~~~~l~l~g~~~s~v~l~i~G~l~~i~~~~ni~I~G-G-~idG~G~~~w~ 118 (321)
-|-..||+||+++-......-+|+|.+|+|.- .+.+.- .+.+++|+.+|.= ...|+| . ..|| |.
T Consensus 240 G~f~TIq~Ai~a~p~~~~~r~vI~Ik~GvY~E-~V~i~~-~k~~i~l~G~g~~-------~TiIt~~~~~~~g-----~~ 305 (541)
T PLN02416 240 GNFSTITDAINFAPNNSNDRIIIYVREGVYEE-NVEIPI-YKTNIVLIGDGSD-------VTFITGNRSVVDG-----WT 305 (541)
T ss_pred CCccCHHHHHHhhhhcCCceEEEEEeCceeEE-EEecCC-CCccEEEEecCCC-------ceEEeCCCccCCC-----CC
Confidence 45779999996544322103578999999973 444421 1256777666520 112233 1 1111 11
Q ss_pred CccCCCCCCCCCCeeEEEEeecceEEeceeEeCCCCe----EEEE-EceeeEEEEeeEEecCCCC----cccEEEEeEEE
Q 047946 119 LNQCHKNSDCQLPTPIRFNFLNDSTITGIKSVDSRYF----HINI-LGCYNLKLNDLKITAHADS----SKDILVSEVFC 189 (321)
Q Consensus 119 ~~~~~~~~~~~rp~~i~~~~~~nv~I~~iti~ns~~~----~i~~-~~s~nv~i~nv~I~~~~~~----s~nI~I~n~~~ 189 (321)
.-.........+++..+||+++|+... .+.+ ...+...+.+|+|.+..|- +..-..++|++
T Consensus 306 ----------T~~saT~~v~~~~F~a~nitf~Ntag~~~~QAVAl~v~~D~~~fy~c~~~G~QDTLy~~~~Rqyy~~C~I 375 (541)
T PLN02416 306 ----------TFRSATLAVSGEGFLARDITIENTAGPEKHQAVALRVNADLVALYRCTINGYQDTLYVHSFRQFYRECDI 375 (541)
T ss_pred ----------ccceEEEEEECCCeEEEeeEEEECCCCCCCceEEEEEcCccEEEEcceEecccchhccCCCceEEEeeEE
Confidence 011233344578999999999998542 1222 2468899999999998774 44567777777
Q ss_pred cC
Q 047946 190 GP 191 (321)
Q Consensus 190 ~~ 191 (321)
.+
T Consensus 376 ~G 377 (541)
T PLN02416 376 YG 377 (541)
T ss_pred ee
Confidence 64
No 58
>PLN02217 probable pectinesterase/pectinesterase inhibitor
Probab=96.97 E-value=0.072 Score=54.71 Aligned_cols=113 Identities=11% Similarity=0.010 Sum_probs=64.5
Q ss_pred chHHHHHHHHHHHhhcC-CCccEEEecCceEEEeeeeeecccCCceEEEEcCeEEEEEEcCCeEEecc--EEEecccccc
Q 047946 41 DDSKAFDTSWREAWNWD-GIKGTVLVPPGKYLVSFAEFEGPCKASISFQLQGLLDLFSIDTSLSLAKG--TFHGQGETAW 117 (321)
Q Consensus 41 ddt~Aiq~Ai~~ac~~~-g~g~~v~vP~G~y~~~~l~l~g~~~s~v~l~i~G~l~~i~~~~ni~I~GG--~idG~G~~~w 117 (321)
-|-.-||+||+++-... . .-+|+|.+|+|.- .+.+.. -+.+++|+.+|.- ...|+|. .-||.+
T Consensus 260 G~f~TIq~Av~a~P~~~~~-r~vI~Ik~GvY~E-~V~I~~-~k~~i~l~Gdg~~-------~TiIt~~~~~~dg~~---- 325 (670)
T PLN02217 260 GQYKTINEALNFVPKKKNT-TFVVHIKAGIYKE-YVQVNR-SMTHLVFIGDGPD-------KTVISGSKSYKDGIT---- 325 (670)
T ss_pred CCccCHHHHHHhccccCCc-eEEEEEeCCceEE-EEEEcC-CCCcEEEEecCCC-------CeEEEcCCccCCCCC----
Confidence 35779999995543322 2 4579999999974 444431 1145666555420 1222320 111100
Q ss_pred CCccCCCCCCCCCCeeEEEEeecceEEeceeEeCCCC----eEEEE-EceeeEEEEeeEEecCCCC
Q 047946 118 PLNQCHKNSDCQLPTPIRFNFLNDSTITGIKSVDSRY----FHINI-LGCYNLKLNDLKITAHADS 178 (321)
Q Consensus 118 ~~~~~~~~~~~~rp~~i~~~~~~nv~I~~iti~ns~~----~~i~~-~~s~nv~i~nv~I~~~~~~ 178 (321)
.--..-.....+++..+||++.|+.. -.+.+ ...+...+.+|+|.+..|-
T Consensus 326 -----------T~~SAT~~v~g~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G~QDT 380 (670)
T PLN02217 326 -----------TYKTATVAIVGDHFIAKNIGFENTAGAIKHQAVAIRVLSDESIFYNCKFDGYQDT 380 (670)
T ss_pred -----------ccceEEEEEECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEcceeeeccch
Confidence 00122334457899999999999854 12222 2467888899999887664
No 59
>PLN02995 Probable pectinesterase/pectinesterase inhibitor
Probab=96.95 E-value=0.067 Score=53.84 Aligned_cols=127 Identities=13% Similarity=0.014 Sum_probs=73.9
Q ss_pred chHHHHHHHHHHHhh---cCCCccEEEecCceEEEeeeeeecccCCceEEEEcCeEEEEEEcCCeEEecc-EEEeccccc
Q 047946 41 DDSKAFDTSWREAWN---WDGIKGTVLVPPGKYLVSFAEFEGPCKASISFQLQGLLDLFSIDTSLSLAKG-TFHGQGETA 116 (321)
Q Consensus 41 ddt~Aiq~Ai~~ac~---~~g~g~~v~vP~G~y~~~~l~l~g~~~s~v~l~i~G~l~~i~~~~ni~I~GG-~idG~G~~~ 116 (321)
-|-.-||+||+++-. ... .-+|+|.+|+|.- .+.+. ..|.+++|+.+|.= ...|+|. .. +.| |
T Consensus 233 G~f~TIq~Ai~a~p~~~~~~~-r~vI~Ik~G~Y~E-~V~i~-~~k~~i~l~G~g~~-------~TvIt~~~~~-~~~--~ 299 (539)
T PLN02995 233 GHFNTVQAAIDVAGRRKVTSG-RFVIYVKRGIYQE-NINVR-LNNDDIMLVGDGMR-------STIITGGRSV-KGG--Y 299 (539)
T ss_pred CCccCHHHHHHhcccccCCCc-eEEEEEeCCEeEE-EEEec-CCCCcEEEEEcCCC-------CeEEEeCCcc-CCC--C
Confidence 467789999965432 222 4679999999975 34442 11257877777620 1222321 00 000 0
Q ss_pred cCCccCCCCCCCCCCeeEEEEeecceEEeceeEeCCCCe----EEEE-EceeeEEEEeeEEecCCCC----cccEEEEeE
Q 047946 117 WPLNQCHKNSDCQLPTPIRFNFLNDSTITGIKSVDSRYF----HINI-LGCYNLKLNDLKITAHADS----SKDILVSEV 187 (321)
Q Consensus 117 w~~~~~~~~~~~~rp~~i~~~~~~nv~I~~iti~ns~~~----~i~~-~~s~nv~i~nv~I~~~~~~----s~nI~I~n~ 187 (321)
- .....-.....+++..+||++.|+... .+.+ ...+...+.+|+|.+..|- ...-.+++|
T Consensus 300 ~-----------T~~SaT~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~Dr~~f~~c~~~G~QDTLy~~~~Rqyy~~C 368 (539)
T PLN02995 300 T-----------TYNSATAGIEGLHFIAKGITFRNTAGPAKGQAVALRSSSDLSIFYKCSIEGYQDTLMVHSQRQFYREC 368 (539)
T ss_pred c-----------ccceEEEEEECCCeEEEeeEEEeCCCCCCCceEEEEEcCCceeEEcceEecccchhccCCCceEEEee
Confidence 0 111233344678999999999998542 2222 2467888999999987764 333466666
Q ss_pred EEcC
Q 047946 188 FCGP 191 (321)
Q Consensus 188 ~~~~ 191 (321)
++.+
T Consensus 369 ~I~G 372 (539)
T PLN02995 369 YIYG 372 (539)
T ss_pred EEee
Confidence 6653
No 60
>PLN02745 Putative pectinesterase/pectinesterase inhibitor
Probab=96.92 E-value=0.11 Score=53.03 Aligned_cols=128 Identities=6% Similarity=-0.003 Sum_probs=74.2
Q ss_pred chHHHHHHHHHHHhhcC-CCccEEEecCceEEEeeeeeecccCCceEEEEcCeEEEEEEcCCeEEeccEEEeccccccCC
Q 047946 41 DDSKAFDTSWREAWNWD-GIKGTVLVPPGKYLVSFAEFEGPCKASISFQLQGLLDLFSIDTSLSLAKGTFHGQGETAWPL 119 (321)
Q Consensus 41 ddt~Aiq~Ai~~ac~~~-g~g~~v~vP~G~y~~~~l~l~g~~~s~v~l~i~G~l~~i~~~~ni~I~GG~idG~G~~~w~~ 119 (321)
-|-..||+||+++-... . .-+|+|.+|+|.- .+.+.. .+.+++|+.+|.= ...|+| +.. +.
T Consensus 295 G~f~TIq~Ai~a~P~~~~~-r~vI~Ik~GvY~E-~V~I~~-~k~~i~l~G~g~~-------~TiIt~-----~~~--~~- 356 (596)
T PLN02745 295 GNFTTISDALAAMPAKYEG-RYVIYVKQGIYDE-TVTVDK-KMVNVTMYGDGSQ-------KTIVTG-----NKN--FA- 356 (596)
T ss_pred CCcccHHHHHHhccccCCc-eEEEEEeCCeeEE-EEEEcC-CCceEEEEecCCC-------ceEEEE-----CCc--cc-
Confidence 35778999996543322 2 4578999999984 344431 1246777666520 111222 110 00
Q ss_pred ccCCCCCCCCCCeeEEEEeecceEEeceeEeCCCC----eEEEE-EceeeEEEEeeEEecCCCC----cccEEEEeEEEc
Q 047946 120 NQCHKNSDCQLPTPIRFNFLNDSTITGIKSVDSRY----FHINI-LGCYNLKLNDLKITAHADS----SKDILVSEVFCG 190 (321)
Q Consensus 120 ~~~~~~~~~~rp~~i~~~~~~nv~I~~iti~ns~~----~~i~~-~~s~nv~i~nv~I~~~~~~----s~nI~I~n~~~~ 190 (321)
. +...--........+++..+||++.|+.. -.+.+ ..++...+.+|++.+..|- ...-.+++|++.
T Consensus 357 ---~--g~~T~~saT~~v~~~~F~a~nitf~Ntag~~~~QAVAl~v~~Dr~~f~~c~~~G~QDTLy~~~~Rqyy~~C~I~ 431 (596)
T PLN02745 357 ---D--GVRTFRTATFVALGEGFMAKSMGFRNTAGPEKHQAVAIRVQSDRSIFLNCRFEGYQDTLYAQTHRQFYRSCVIT 431 (596)
T ss_pred ---C--CCcceeeEEEEEEcCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeEEeecccccccCCCcEEEEeeEEE
Confidence 0 00010123334467899999999999743 12222 2578899999999998764 344566777766
Q ss_pred C
Q 047946 191 P 191 (321)
Q Consensus 191 ~ 191 (321)
+
T Consensus 432 G 432 (596)
T PLN02745 432 G 432 (596)
T ss_pred e
Confidence 4
No 61
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=96.90 E-value=0.019 Score=51.46 Aligned_cols=110 Identities=18% Similarity=0.127 Sum_probs=85.5
Q ss_pred eEEEEeecceEEeceeEeCCCCeEEEEEceeeEEEEeeEEecCCCC-----cccEEEEeEEEcC-CCeeEEeecCCCCCC
Q 047946 133 PIRFNFLNDSTITGIKSVDSRYFHINILGCYNLKLNDLKITAHADS-----SKDILVSEVFCGP-GQGISVGSLGKGIKD 206 (321)
Q Consensus 133 ~i~~~~~~nv~I~~iti~ns~~~~i~~~~s~nv~i~nv~I~~~~~~-----s~nI~I~n~~~~~-~~GI~iGS~G~~~~~ 206 (321)
.+.+..+++..|++.++.+.. .++.+..+++++|++.++...... +++++|+++.+.. ..||.+...
T Consensus 15 Gi~l~~~~~~~i~~n~i~~~~-~gi~~~~s~~~~I~~n~i~~~~~GI~~~~s~~~~i~~n~i~~n~~Gi~l~~s------ 87 (236)
T PF05048_consen 15 GIYLWNSSNNSIENNTISNSR-DGIYVENSDNNTISNNTISNNRYGIHLMGSSNNTIENNTISNNGYGIYLMGS------ 87 (236)
T ss_pred cEEEEeCCCCEEEcCEEEeCC-CEEEEEEcCCeEEEeeEEECCCeEEEEEccCCCEEEeEEEEccCCCEEEEcC------
Confidence 578888899999999998765 466888999999999999887543 8889999999876 468888532
Q ss_pred CcEEEEEEEeeEEEeccceEEEEeeCCCCceeeeCcEEeeeEEecCCccEEEEe
Q 047946 207 EEVVGLTVRNCTFTCTSNGVRVKTWPDSHIGIASNFTFEDIVMNNVENPIVIDQ 260 (321)
Q Consensus 207 ~~v~nI~v~n~~i~~~~~gi~ikt~~g~~~g~v~nIt~~ni~~~~v~~~i~i~~ 260 (321)
.+.+|+++++.+...||.+... ++.++++.++.+-..+|.+..
T Consensus 88 ---~~~~I~~N~i~~n~~GI~l~~s--------~~~~I~~N~i~~~~~GI~l~~ 130 (236)
T PF05048_consen 88 ---SNNTISNNTISNNGYGIYLYGS--------SNNTISNNTISNNGYGIYLSS 130 (236)
T ss_pred ---CCcEEECCEecCCCceEEEeeC--------CceEEECcEEeCCCEEEEEEe
Confidence 2448999999998889877742 335666666666667777765
No 62
>PLN02313 Pectinesterase/pectinesterase inhibitor
Probab=96.90 E-value=0.08 Score=53.89 Aligned_cols=127 Identities=12% Similarity=0.030 Sum_probs=75.0
Q ss_pred chHHHHHHHHHHHhhcCCCccEEEecCceEEEeeeeeecccCCceEEEEcCeEEEEEEcCCeEEec--cEEEeccccccC
Q 047946 41 DDSKAFDTSWREAWNWDGIKGTVLVPPGKYLVSFAEFEGPCKASISFQLQGLLDLFSIDTSLSLAK--GTFHGQGETAWP 118 (321)
Q Consensus 41 ddt~Aiq~Ai~~ac~~~g~g~~v~vP~G~y~~~~l~l~g~~~s~v~l~i~G~l~~i~~~~ni~I~G--G~idG~G~~~w~ 118 (321)
-|-..||+||+++-......-+|||.+|+|.- .+.+.. .+.+++|..+|.= ...|+| ...||.+
T Consensus 285 G~f~TI~~Av~a~p~~~~~r~vI~ik~GvY~E-~V~i~~-~k~ni~l~Gdg~~-------~TiIt~~~~~~~g~~----- 350 (587)
T PLN02313 285 GDFTTVAAAVAAAPEKSNKRFVIHIKAGVYRE-NVEVTK-KKKNIMFLGDGRG-------KTIITGSRNVVDGST----- 350 (587)
T ss_pred CCCccHHHHHHhccccCCceEEEEEeCceeEE-EEEeCC-CCCeEEEEecCCC-------ccEEEeCCcccCCCC-----
Confidence 35779999996544322104589999999974 344321 1246776666520 222333 1222211
Q ss_pred CccCCCCCCCCCCeeEEEEeecceEEeceeEeCCCCe----EEEE-EceeeEEEEeeEEecCCCC----cccEEEEeEEE
Q 047946 119 LNQCHKNSDCQLPTPIRFNFLNDSTITGIKSVDSRYF----HINI-LGCYNLKLNDLKITAHADS----SKDILVSEVFC 189 (321)
Q Consensus 119 ~~~~~~~~~~~rp~~i~~~~~~nv~I~~iti~ns~~~----~i~~-~~s~nv~i~nv~I~~~~~~----s~nI~I~n~~~ 189 (321)
.-.........+++..+||+++|.... .+.+ ...+...+.+|.+.+..|- +..-..++|++
T Consensus 351 ----------t~~sat~~v~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~fy~C~~~g~QDTLy~~~~rq~y~~c~I 420 (587)
T PLN02313 351 ----------TFHSATVAAVGERFLARDITFQNTAGPSKHQAVALRVGSDFSAFYQCDMFAYQDTLYVHSNRQFFVKCHI 420 (587)
T ss_pred ----------ceeeEEEEEECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeEecccchhccCCCcEEEEeeEE
Confidence 001233344678999999999998542 2222 2578888999999988764 33446677776
Q ss_pred cC
Q 047946 190 GP 191 (321)
Q Consensus 190 ~~ 191 (321)
.+
T Consensus 421 ~G 422 (587)
T PLN02313 421 TG 422 (587)
T ss_pred ee
Confidence 64
No 63
>PLN02990 Probable pectinesterase/pectinesterase inhibitor
Probab=96.89 E-value=0.11 Score=52.69 Aligned_cols=127 Identities=9% Similarity=0.035 Sum_probs=73.4
Q ss_pred chHHHHHHHHHHHhhcC-CCccEEEecCceEEEeeeeeecccCCceEEEEcCeEEEEEEcCCeEEec--cEEEecccccc
Q 047946 41 DDSKAFDTSWREAWNWD-GIKGTVLVPPGKYLVSFAEFEGPCKASISFQLQGLLDLFSIDTSLSLAK--GTFHGQGETAW 117 (321)
Q Consensus 41 ddt~Aiq~Ai~~ac~~~-g~g~~v~vP~G~y~~~~l~l~g~~~s~v~l~i~G~l~~i~~~~ni~I~G--G~idG~G~~~w 117 (321)
-|-..||+||+++.... . .-+|+|.+|+|.- .+.+.. .+.+++|+.+|.- ...|+| ..-+|. |
T Consensus 269 G~f~TIq~Av~a~p~~~~~-r~vI~Ik~GvY~E-~V~i~~-~k~~i~l~G~g~~-------~TiIt~~~~~~~g~----~ 334 (572)
T PLN02990 269 GQYKTINEALNAVPKANQK-PFVIYIKQGVYNE-KVDVTK-KMTHVTFIGDGPT-------KTKITGSLNFYIGK----V 334 (572)
T ss_pred CCCcCHHHHHhhCcccCCc-eEEEEEeCceeEE-EEEecC-CCCcEEEEecCCC-------ceEEEeccccCCCC----c
Confidence 35778999996543322 2 3579999999984 444431 1256777666520 122232 110110 0
Q ss_pred CCccCCCCCCCCCCeeEEEEeecceEEeceeEeCCCCe----EEEE-EceeeEEEEeeEEecCCCC----cccEEEEeEE
Q 047946 118 PLNQCHKNSDCQLPTPIRFNFLNDSTITGIKSVDSRYF----HINI-LGCYNLKLNDLKITAHADS----SKDILVSEVF 188 (321)
Q Consensus 118 ~~~~~~~~~~~~rp~~i~~~~~~nv~I~~iti~ns~~~----~i~~-~~s~nv~i~nv~I~~~~~~----s~nI~I~n~~ 188 (321)
. .--..-.....+++..+||++.|+... .+.+ ...+...+.+|++.+..|- +..-.+++|+
T Consensus 335 ~----------T~~saT~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~f~~c~~~G~QDTLy~~~~Rqyy~~C~ 404 (572)
T PLN02990 335 K----------TYLTATVAINGDHFTAKNIGFENTAGPEGHQAVALRVSADYAVFYNCQIDGYQDTLYVHSHRQFFRDCT 404 (572)
T ss_pred c----------ceeeeEEEEEcCCEEEEeeEEEeCCCCCCCceEEEEEcCCcEEEEeeeEecccchhccCCCcEEEEeeE
Confidence 0 001123334578999999999998542 2222 2467888999999987764 3345666666
Q ss_pred EcC
Q 047946 189 CGP 191 (321)
Q Consensus 189 ~~~ 191 (321)
+.+
T Consensus 405 I~G 407 (572)
T PLN02990 405 VSG 407 (572)
T ss_pred Eec
Confidence 654
No 64
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=96.82 E-value=0.015 Score=53.47 Aligned_cols=113 Identities=14% Similarity=0.132 Sum_probs=82.6
Q ss_pred eEEEEeecceEEeceeEeC-CCCeEEEEEceeeEEEEeeEEecCC------C------CcccEEEEeEEEcCC-------
Q 047946 133 PIRFNFLNDSTITGIKSVD-SRYFHINILGCYNLKLNDLKITAHA------D------SSKDILVSEVFCGPG------- 192 (321)
Q Consensus 133 ~i~~~~~~nv~I~~iti~n-s~~~~i~~~~s~nv~i~nv~I~~~~------~------~s~nI~I~n~~~~~~------- 192 (321)
.+.+.-|.|.+|.|+--.- --.|++.+.+.+||.|+|++|.... | ++.||.|.+|++..+
T Consensus 94 k~~iki~sNkTivG~g~~a~~~g~gl~i~~a~NVIirNltf~~~~~~d~~~D~Isi~~~~~nIWIDH~tf~~~s~~~~~~ 173 (345)
T COG3866 94 KITIKIGSNKTIVGSGADATLVGGGLKIRDAGNVIIRNLTFEGFYQGDPNYDAISIYDDGHNIWIDHNTFSGGSYNASGS 173 (345)
T ss_pred eEEEeeccccEEEeeccccEEEeceEEEEeCCcEEEEeeEEEeeccCCCCCCcEEeccCCeEEEEEeeEecccccccccc
Confidence 3777778888877764211 1358899999999999999999865 2 289999999998752
Q ss_pred --Ce-eEEeecCCCCCCCcEEEEEEEeeEEEeccceEEEEeeCCCC-ceeeeCcEEeeeEEecCC
Q 047946 193 --QG-ISVGSLGKGIKDEEVVGLTVRNCTFTCTSNGVRVKTWPDSH-IGIASNFTFEDIVMNNVE 253 (321)
Q Consensus 193 --~G-I~iGS~G~~~~~~~v~nI~v~n~~i~~~~~gi~ikt~~g~~-~g~v~nIt~~ni~~~~v~ 253 (321)
+| +.|+ .+-..|+|+++.|.+...++-+...+... -..-.+|||.+..++|..
T Consensus 174 h~DGl~Dik--------~~AnyITiS~n~fhdh~Kssl~G~sD~~~~~~~~~kvT~hhNyFkn~~ 230 (345)
T COG3866 174 HGDGLVDIK--------KDANYITISYNKFHDHDKSSLLGSSDSSNYDDGKYKVTIHHNYFKNLY 230 (345)
T ss_pred CCCccEEec--------cCCcEEEEEeeeeecCCeeeeeccCCcccccCCceeEEEecccccccc
Confidence 23 3332 45578999999999999888776544211 133478999999999853
No 65
>PLN02468 putative pectinesterase/pectinesterase inhibitor
Probab=96.72 E-value=0.078 Score=53.69 Aligned_cols=125 Identities=10% Similarity=0.044 Sum_probs=72.8
Q ss_pred hHHHHHHHHHHHhhcC-CCccEEEecCceEEEeeeeeecccCCceEEEEcCeEEEEEEcCCeEEec--cEEEeccccccC
Q 047946 42 DSKAFDTSWREAWNWD-GIKGTVLVPPGKYLVSFAEFEGPCKASISFQLQGLLDLFSIDTSLSLAK--GTFHGQGETAWP 118 (321)
Q Consensus 42 dt~Aiq~Ai~~ac~~~-g~g~~v~vP~G~y~~~~l~l~g~~~s~v~l~i~G~l~~i~~~~ni~I~G--G~idG~G~~~w~ 118 (321)
|-.-||+|++++.... . .-+|+|.+|+|.- .+.+.- .+.+++|+.+|.= .-.|+| -..||.. -|
T Consensus 269 ~f~tI~~Av~a~p~~~~~-~~vI~ik~GvY~E-~V~i~~-~k~~i~~~G~g~~-------~tiIt~~~~~~dg~~--t~- 335 (565)
T PLN02468 269 KYKTISEALKDVPEKSEK-RTIIYVKKGVYFE-NVRVEK-KKWNVVMVGDGMS-------KTIVSGSLNFVDGTP--TF- 335 (565)
T ss_pred CccCHHHHHHhchhcCCC-cEEEEEeCCceEE-EEEecC-CCCeEEEEecCCC-------CCEEEeCCccCCCCC--cc-
Confidence 4678999996544322 2 4689999999973 444431 1146777666520 112233 1112211 01
Q ss_pred CccCCCCCCCCCCeeEEEEeecceEEeceeEeCCCCe----EEEE-EceeeEEEEeeEEecCCCC----cccEEEEeEEE
Q 047946 119 LNQCHKNSDCQLPTPIRFNFLNDSTITGIKSVDSRYF----HINI-LGCYNLKLNDLKITAHADS----SKDILVSEVFC 189 (321)
Q Consensus 119 ~~~~~~~~~~~rp~~i~~~~~~nv~I~~iti~ns~~~----~i~~-~~s~nv~i~nv~I~~~~~~----s~nI~I~n~~~ 189 (321)
-..-.....+++..+|++++|+..- .+.+ ...+...+.+|++.+..|- +..-..++|++
T Consensus 336 ------------~saT~~v~~~~f~a~~itf~Ntag~~~~QAVAl~v~~D~~~fy~c~~~G~QDTLy~~~~rq~y~~C~I 403 (565)
T PLN02468 336 ------------STATFAVFGKGFMARDMGFRNTAGPIKHQAVALMSSADLSVFYRCTMDAFQDTLYAHAQRQFYRECNI 403 (565)
T ss_pred ------------ceeeeeEECCCeEEEEEEEEeCCCCCCCceEEEEEcCCcEEEEEeEEEeccchhccCCCceEEEeeEE
Confidence 1123334568999999999998542 1222 3578889999999987764 33345666665
Q ss_pred cC
Q 047946 190 GP 191 (321)
Q Consensus 190 ~~ 191 (321)
.+
T Consensus 404 ~G 405 (565)
T PLN02468 404 YG 405 (565)
T ss_pred ec
Confidence 53
No 66
>PRK10531 acyl-CoA thioesterase; Provisional
Probab=96.55 E-value=0.23 Score=48.25 Aligned_cols=172 Identities=10% Similarity=0.106 Sum_probs=90.4
Q ss_pred CCCCcchHHHHHHHHHHHhhcCCC-ccEEEecCceEEEeeeeeecccCCceEEEEcCe---EEEEEEcC-----------
Q 047946 36 ADGITDDSKAFDTSWREAWNWDGI-KGTVLVPPGKYLVSFAEFEGPCKASISFQLQGL---LDLFSIDT----------- 100 (321)
Q Consensus 36 ~dg~tddt~Aiq~Ai~~ac~~~g~-g~~v~vP~G~y~~~~l~l~g~~~s~v~l~i~G~---l~~i~~~~----------- 100 (321)
+||. -|-.-||+||+++...... ..+|+|.+|+|.- .+.+.. .+.+++|+.+|. -.-|.+..
T Consensus 88 ~dGs-Gdf~TIQaAIdAa~~~~~~~r~~I~Ik~GvY~E-kV~Ip~-~kp~ItL~G~G~~~~~TvIt~~~~~~~~~~~~~~ 164 (422)
T PRK10531 88 GTQG-VTHTTVQAAVDAAIAKRTNKRQYIAVMPGTYQG-TVYVPA-AAPPITLYGTGEKPIDVKIGLALDGEMSPADWRA 164 (422)
T ss_pred CCCC-CCccCHHHHHhhccccCCCceEEEEEeCceeEE-EEEeCC-CCceEEEEecCCCCCceEEEecCccccccccccc
Confidence 4443 2577899999654432210 3578899999974 444431 125788877652 00011110
Q ss_pred CeEEeccEEEeccccccCCccCCC--CCC-CCCCeeEEEEeecceEEeceeEeCCCCe--------EEEE-EceeeEEEE
Q 047946 101 SLSLAKGTFHGQGETAWPLNQCHK--NSD-CQLPTPIRFNFLNDSTITGIKSVDSRYF--------HINI-LGCYNLKLN 168 (321)
Q Consensus 101 ni~I~GG~idG~G~~~w~~~~~~~--~~~-~~rp~~i~~~~~~nv~I~~iti~ns~~~--------~i~~-~~s~nv~i~ 168 (321)
.+.-.|....++ ..|+....+.. ... ..--........+++..+||+++|+... .+.+ ...+.+.+.
T Consensus 165 ~~~~~g~~~~~~-p~~y~~d~~~~~~~~~~gT~~SATv~v~ad~F~a~NLTf~Ntag~~~~~~~~QAVALrv~GDra~fy 243 (422)
T PRK10531 165 NVNPRGKYMPGK-PAWYMYDSCQSKRAATIGTLCSAVFWSQNNGLQLQNLTIENTLGDSVDAGNHPAVALRTDGDKVQIE 243 (422)
T ss_pred cccccccccccc-cccccccccccccCCCcCceeeEEEEEECCCEEEEeeEEEeCCCCCCCCCcceeEEEEEcCCcEEEE
Confidence 000000011111 13443321211 111 1112234455789999999999999542 2222 256788899
Q ss_pred eeEEecCCCC--c--------------ccEEEEeEEEcCCCeeEEeecCCCCCCCcEEEEEEEeeEEEe
Q 047946 169 DLKITAHADS--S--------------KDILVSEVFCGPGQGISVGSLGKGIKDEEVVGLTVRNCTFTC 221 (321)
Q Consensus 169 nv~I~~~~~~--s--------------~nI~I~n~~~~~~~GI~iGS~G~~~~~~~v~nI~v~n~~i~~ 221 (321)
+|+|.+..|- . ..-.+++|++.+.--+-+|. -...++||+|..
T Consensus 244 ~C~flG~QDTLy~~~~~~~~~~~~~~~gRqYf~~CyIeG~VDFIFG~----------g~AvFenC~I~s 302 (422)
T PRK10531 244 NVNILGRQDTFFVTNSGVQNRLETDRQPRTYVKNSYIEGDVDFVFGR----------GAVVFDNTEFRV 302 (422)
T ss_pred eeEEecccceeeeccccccccccccccccEEEEeCEEeecccEEccC----------ceEEEEcCEEEE
Confidence 9999987664 1 14778888887533344442 234566666654
No 67
>PLN02197 pectinesterase
Probab=96.53 E-value=0.093 Score=53.28 Aligned_cols=126 Identities=8% Similarity=-0.055 Sum_probs=72.5
Q ss_pred chHHHHHHHHHHHhhcCCCccEEEecCceEEEeeeeeecccCCceEEEEcCeEEEEEEcCCeEEec-c-E--EEeccccc
Q 047946 41 DDSKAFDTSWREAWNWDGIKGTVLVPPGKYLVSFAEFEGPCKASISFQLQGLLDLFSIDTSLSLAK-G-T--FHGQGETA 116 (321)
Q Consensus 41 ddt~Aiq~Ai~~ac~~~g~g~~v~vP~G~y~~~~l~l~g~~~s~v~l~i~G~l~~i~~~~ni~I~G-G-~--idG~G~~~ 116 (321)
-|-..||+||+++-......-+|+|.+|+|.= .+.+.. .+.+++|+.+|.= ...|++ - . .+|.
T Consensus 285 G~f~TIq~Ai~a~P~~~~~r~vI~Ik~GvY~E-~V~I~~-~k~ni~l~G~g~~-------~TiIt~~~~~~~~~g~---- 351 (588)
T PLN02197 285 GQFKTISQAVMACPDKNPGRCIIHIKAGIYNE-QVTIPK-KKNNIFMFGDGAR-------KTVISYNRSVKLSPGT---- 351 (588)
T ss_pred CCcCCHHHHHHhccccCCceEEEEEeCceEEE-EEEccC-CCceEEEEEcCCC-------CeEEEeccccccCCCC----
Confidence 35778999996543322103578999999974 444431 1256777666520 122232 0 0 0110
Q ss_pred cCCccCCCCCCCCCCeeEEEEeecceEEeceeEeCCCCe----EEEE-EceeeEEEEeeEEecCCCC----cccEEEEeE
Q 047946 117 WPLNQCHKNSDCQLPTPIRFNFLNDSTITGIKSVDSRYF----HINI-LGCYNLKLNDLKITAHADS----SKDILVSEV 187 (321)
Q Consensus 117 w~~~~~~~~~~~~rp~~i~~~~~~nv~I~~iti~ns~~~----~i~~-~~s~nv~i~nv~I~~~~~~----s~nI~I~n~ 187 (321)
. .--..-.....+++..+||+++|+... .+.+ ...+...+.+|++.+..|- +..-.+++|
T Consensus 352 ~-----------T~~SaT~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~f~GyQDTLy~~~~Rqyy~~C 420 (588)
T PLN02197 352 T-----------TSLSGTVQVESEGFMAKWIGFKNTAGPMGHQAVAIRVNGDRAVIFNCRFDGYQDTLYVNNGRQFYRNI 420 (588)
T ss_pred c-----------ccceeEEEEECCcEEEEEeEEEeCCCCCCCceEEEEecCCcEEEEEeEEEecCcceEecCCCEEEEee
Confidence 0 001123344678999999999997542 2222 2477888999999987764 333456666
Q ss_pred EEc
Q 047946 188 FCG 190 (321)
Q Consensus 188 ~~~ 190 (321)
++.
T Consensus 421 ~I~ 423 (588)
T PLN02197 421 VVS 423 (588)
T ss_pred EEE
Confidence 655
No 68
>PLN02314 pectinesterase
Probab=96.42 E-value=0.13 Score=52.41 Aligned_cols=125 Identities=11% Similarity=0.024 Sum_probs=72.9
Q ss_pred hHHHHHHHHHHHhhcC-CCccEEEecCceEEEeeeeeecccCCceEEEEcCeEEEEEEcCCeEEec--cEEEeccccccC
Q 047946 42 DSKAFDTSWREAWNWD-GIKGTVLVPPGKYLVSFAEFEGPCKASISFQLQGLLDLFSIDTSLSLAK--GTFHGQGETAWP 118 (321)
Q Consensus 42 dt~Aiq~Ai~~ac~~~-g~g~~v~vP~G~y~~~~l~l~g~~~s~v~l~i~G~l~~i~~~~ni~I~G--G~idG~G~~~w~ 118 (321)
|-.-||+|++++.... . .-+|+|.+|+|.= .+.+.- .+.+++|+.+|.= ...|+| -..||.. .+
T Consensus 289 ~f~TI~~Av~a~p~~~~~-r~vI~ik~G~Y~E-~V~i~~-~k~~i~l~G~g~~-------~tiIt~~~~~~~g~~-t~-- 355 (586)
T PLN02314 289 DVKTINEAVASIPKKSKS-RFVIYVKEGTYVE-NVLLDK-SKWNVMIYGDGKD-------KTIISGSLNFVDGTP-TF-- 355 (586)
T ss_pred CccCHHHHHhhccccCCc-eEEEEEcCceEEE-EEEecC-CCceEEEEecCCC-------CcEEEecCCcCCCCC-cc--
Confidence 5678999995543322 2 3579999999974 444431 1246777666520 122233 1112211 00
Q ss_pred CccCCCCCCCCCCeeEEEEeecceEEeceeEeCCCCe----EEEE-EceeeEEEEeeEEecCCCC----cccEEEEeEEE
Q 047946 119 LNQCHKNSDCQLPTPIRFNFLNDSTITGIKSVDSRYF----HINI-LGCYNLKLNDLKITAHADS----SKDILVSEVFC 189 (321)
Q Consensus 119 ~~~~~~~~~~~rp~~i~~~~~~nv~I~~iti~ns~~~----~i~~-~~s~nv~i~nv~I~~~~~~----s~nI~I~n~~~ 189 (321)
-..-.....+++..+||++.|+..- .+.+ ...+...+.+|++.+..|- +..-..++|++
T Consensus 356 ------------~saT~~v~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~f~~c~~~G~QDTLy~~~~rq~y~~C~I 423 (586)
T PLN02314 356 ------------STATFAAAGKGFIAKDMGFINTAGAAKHQAVAFRSGSDMSVFYQCSFDAFQDTLYAHSNRQFYRDCDI 423 (586)
T ss_pred ------------ceEEEEEEcCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeEEEeccchheeCCCCEEEEeeEE
Confidence 1233344678999999999998431 1222 2567788999999987764 33356666666
Q ss_pred cC
Q 047946 190 GP 191 (321)
Q Consensus 190 ~~ 191 (321)
.+
T Consensus 424 ~G 425 (586)
T PLN02314 424 TG 425 (586)
T ss_pred Ee
Confidence 53
No 69
>PF12218 End_N_terminal: N terminal extension of bacteriophage endosialidase; InterPro: IPR024429 This entry represents the N-terminal extension domain of endosialidases which is approximately 70 amino acids in length. The two N-terminal domains (this domain and the beta propeller) assemble in the compact 'cap' whereas the C-terminal domain forms an extended tail-like structure. The very N-terminal part of the 'cap' region (residues 246 to 312) holds the only alpha-helix of the protein and is presumably the residual part of the deleted N-terminal head-binding domain [].; PDB: 3JU4_A 3GVL_A 3GVK_B 3GVJ_A 1V0E_B 1V0F_E.
Probab=96.33 E-value=0.0047 Score=42.89 Aligned_cols=37 Identities=32% Similarity=0.405 Sum_probs=21.6
Q ss_pred ccCCCCcchHHHHHHHHHHHhhcCCCccEEEecCc-eEEEeee
Q 047946 34 AVADGITDDSKAFDTSWREAWNWDGIKGTVLVPPG-KYLVSFA 75 (321)
Q Consensus 34 A~~dg~tddt~Aiq~Ai~~ac~~~g~g~~v~vP~G-~y~~~~l 75 (321)
|+|||.+|||.||.+|+++ .. .+.++=-+| ||.++++
T Consensus 1 A~GDGvtdDt~A~~a~l~a-~~----~g~~IDg~GlTykVs~l 38 (67)
T PF12218_consen 1 AKGDGVTDDTAAITAALEA-SP----VGRKIDGAGLTYKVSSL 38 (67)
T ss_dssp ---CCCCE-HHHHHHHHHH-S-----TTS-EE-TT-EEEESS-
T ss_pred CCCccccCcHHHHHHHHhc-cC----CCeEEecCCceEEEeeC
Confidence 7999999999999999943 22 224444445 7998765
No 70
>smart00656 Amb_all Amb_all domain.
Probab=96.28 E-value=0.032 Score=48.58 Aligned_cols=98 Identities=13% Similarity=0.031 Sum_probs=63.3
Q ss_pred eEEEEEceeeEEEEeeEEecCCC------C------cccEEEEeEEEcCCCeeEEeec---CCCCCCCcEEEEEEEeeEE
Q 047946 155 FHINILGCYNLKLNDLKITAHAD------S------SKDILVSEVFCGPGQGISVGSL---GKGIKDEEVVGLTVRNCTF 219 (321)
Q Consensus 155 ~~i~~~~s~nv~i~nv~I~~~~~------~------s~nI~I~n~~~~~~~GI~iGS~---G~~~~~~~v~nI~v~n~~i 219 (321)
..+.+..++||.|+|++|+.... + +++|.|..|++..+.....+.. |.-.......+|++++|.|
T Consensus 32 ~gl~i~~~~NVIirnl~i~~~~~~~~~~~D~i~~~~~~~VwIDHct~s~~~~~~~~~~~~D~~~di~~~s~~vTvs~~~f 111 (190)
T smart00656 32 GGLTIKSVSNVIIRNLTIHDPKPVYGSDGDAISIDGSSNVWIDHVSLSGCTVTGFGDDTYDGLIDIKNGSTYVTISNNYF 111 (190)
T ss_pred eEEEEEecceEEEeCCEEECCccCCCCCCCEEEEeCCCeEEEEccEeEcceeccCCCCCCCccEEECcccccEEEECceE
Confidence 45666668899999999998643 1 8999999999876511111100 0000013458999999999
Q ss_pred EeccceEEEEeeCCCCceeeeCcEEeeeEEecC
Q 047946 220 TCTSNGVRVKTWPDSHIGIASNFTFEDIVMNNV 252 (321)
Q Consensus 220 ~~~~~gi~ikt~~g~~~g~v~nIt~~ni~~~~v 252 (321)
.+...+.-+............+|||.+..+.++
T Consensus 112 ~~h~~~~liG~~d~~~~~~~~~vT~h~N~~~~~ 144 (190)
T smart00656 112 HNHWKVMLLGHSDSDTDDGKMRVTIAHNYFGNL 144 (190)
T ss_pred ecCCEEEEEccCCCccccccceEEEECcEEcCc
Confidence 988878777653311112244788888888764
No 71
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=95.99 E-value=0.57 Score=44.93 Aligned_cols=149 Identities=13% Similarity=0.093 Sum_probs=86.2
Q ss_pred cEEEecCc-eEEEe-eeeeecccCCceEEEEcCeEEEEEEcCCeEEeccEEEeccccccCCccCCCCCCCCCCeeEEEEe
Q 047946 61 GTVLVPPG-KYLVS-FAEFEGPCKASISFQLQGLLDLFSIDTSLSLAKGTFHGQGETAWPLNQCHKNSDCQLPTPIRFNF 138 (321)
Q Consensus 61 ~~v~vP~G-~y~~~-~l~l~g~~~s~v~l~i~G~l~~i~~~~ni~I~GG~idG~G~~~w~~~~~~~~~~~~rp~~i~~~~ 138 (321)
+.|++-|| +|.+. ++.++ +...+...|+.+ .| ++.+.....- ... ...|. +..
T Consensus 65 aKVaL~Pg~~Y~i~~~V~I~----~~cYIiGnGA~V--------~v-----~~~~~~~f~v---~~~--~~~P~---V~g 119 (386)
T PF01696_consen 65 AKVALRPGAVYVIRKPVNIR----SCCYIIGNGATV--------RV-----NGPDRVAFRV---CMQ--SMGPG---VVG 119 (386)
T ss_pred CEEEeCCCCEEEEeeeEEec----ceEEEECCCEEE--------EE-----eCCCCceEEE---EcC--CCCCe---Eee
Confidence 47777666 69985 78998 666666666422 12 2221110000 000 01353 233
Q ss_pred ecceEEeceeEeCCC-CeEEEEEceeeEEEEeeEEecCCCC----cccEEEEeEEEcCCC-eeEEeecCCCCCCCcEEEE
Q 047946 139 LNDSTITGIKSVDSR-YFHINILGCYNLKLNDLKITAHADS----SKDILVSEVFCGPGQ-GISVGSLGKGIKDEEVVGL 212 (321)
Q Consensus 139 ~~nv~I~~iti~ns~-~~~i~~~~s~nv~i~nv~I~~~~~~----s~nI~I~n~~~~~~~-GI~iGS~G~~~~~~~v~nI 212 (321)
-.++++.|+.+...+ .-++.+....++.++++.+.+.... .....|++|++.+-. |+. ..+...+
T Consensus 120 M~~VtF~ni~F~~~~~~~g~~f~~~t~~~~hgC~F~gf~g~cl~~~~~~~VrGC~F~~C~~gi~---------~~~~~~l 190 (386)
T PF01696_consen 120 MEGVTFVNIRFEGRDTFSGVVFHANTNTLFHGCSFFGFHGTCLESWAGGEVRGCTFYGCWKGIV---------SRGKSKL 190 (386)
T ss_pred eeeeEEEEEEEecCCccceeEEEecceEEEEeeEEecCcceeEEEcCCcEEeeeEEEEEEEEee---------cCCcceE
Confidence 446788888888776 5666677777888888888876653 567788888875321 332 2344677
Q ss_pred EEEeeEEEeccceEEEEeeCCCCceeeeCcEEeeeE
Q 047946 213 TVRNCTFTCTSNGVRVKTWPDSHIGIASNFTFEDIV 248 (321)
Q Consensus 213 ~v~n~~i~~~~~gi~ikt~~g~~~g~v~nIt~~ni~ 248 (321)
.|++|+|..+.-|+ .+. + ...+++-.+.|..
T Consensus 191 sVk~C~FekC~igi--~s~--G-~~~i~hn~~~ec~ 221 (386)
T PF01696_consen 191 SVKKCVFEKCVIGI--VSE--G-PARIRHNCASECG 221 (386)
T ss_pred EeeheeeeheEEEE--Eec--C-CeEEecceecccc
Confidence 88888888776666 221 1 2455555554443
No 72
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism]
Probab=95.42 E-value=0.35 Score=45.06 Aligned_cols=150 Identities=11% Similarity=0.101 Sum_probs=80.5
Q ss_pred chHHHHHHHHHHHhhcCCC-ccEEEecCceEEEeeeeeecccCCceEEEEcCe--EE-EEEEcCCeEEeccEEEeccccc
Q 047946 41 DDSKAFDTSWREAWNWDGI-KGTVLVPPGKYLVSFAEFEGPCKASISFQLQGL--LD-LFSIDTSLSLAKGTFHGQGETA 116 (321)
Q Consensus 41 ddt~Aiq~Ai~~ac~~~g~-g~~v~vP~G~y~~~~l~l~g~~~s~v~l~i~G~--l~-~i~~~~ni~I~GG~idG~G~~~ 116 (321)
++-..||+|+++|....+. ...+.+.+|.|.- .+.+.-+- ..++|+.++. +. -|.+ ...+|... ..|
T Consensus 92 ~~f~TIQaAvdaA~~~~~~kr~yI~vk~GvY~e-~v~Vp~~~-~~ITLyGed~~~~~tvIg~----n~aagp~n---p~~ 162 (405)
T COG4677 92 VTFTTIQAAVDAAIIKRTNKRQYIAVKAGVYQE-TVYVPAAP-GGITLYGEDEKPIDTVIGL----NLAAGPGN---PAG 162 (405)
T ss_pred cchHHHHHHHhhhcccCCCceEEEEEccceece-eEEecCCC-CceeEEecCCCCcceEEEE----ecCCCCCC---ccc
Confidence 5677899999665543320 2344558999963 33333110 1377766642 00 0111 00112211 124
Q ss_pred cCCccCCCCCCCC---CCeeEEEEeecceEEeceeEeCCCCeE---------EEEEceeeEEEEeeEEecCCCC------
Q 047946 117 WPLNQCHKNSDCQ---LPTPIRFNFLNDSTITGIKSVDSRYFH---------INILGCYNLKLNDLKITAHADS------ 178 (321)
Q Consensus 117 w~~~~~~~~~~~~---rp~~i~~~~~~nv~I~~iti~ns~~~~---------i~~~~s~nv~i~nv~I~~~~~~------ 178 (321)
+....|....... --..-.+..-+++..+++|+.|....+ ..-...+.+.++||++.+..|-
T Consensus 163 ~m~n~c~ss~~~tigt~~Sat~~v~~ndf~~~nlT~en~~gd~~lagn~~AVaL~~dgDka~frnv~llg~QdTlFv~~~ 242 (405)
T COG4677 163 YMYNSCQSSRSATIGTLCSATFWVQNNDFQLQNLTIENTLGDGVLAGNHPAVALATDGDKAIFRNVNLLGNQDTLFVGNS 242 (405)
T ss_pred eeecccccchhhhhhhhhhhhheeecCCcccccceeecccCCccccCCceeEEEEecCCceeeeeeeEeeccceEEecCC
Confidence 4444444221110 011234455678888999999875543 2234678899999999987653
Q ss_pred ------cc----cEEEEeEEEcCCCeeEEee
Q 047946 179 ------SK----DILVSEVFCGPGQGISVGS 199 (321)
Q Consensus 179 ------s~----nI~I~n~~~~~~~GI~iGS 199 (321)
.. .-.++||++.++--+-+||
T Consensus 243 ~~~~~~~tn~~~R~yftNsyI~GdvDfIfGs 273 (405)
T COG4677 243 GVQNRLETNRQPRTYFTNSYIEGDVDFIFGS 273 (405)
T ss_pred CCccccccCcchhhheecceecccceEEecc
Confidence 11 3357888888655666665
No 73
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=94.93 E-value=1.2 Score=38.76 Aligned_cols=113 Identities=19% Similarity=0.242 Sum_probs=67.4
Q ss_pred EeceeEeCCC------CeEEEEEceeeEEEEeeEEecCCCCcccEEEEeEE---EcCC---CeeEEeecCCCCCCCcEEE
Q 047946 144 ITGIKSVDSR------YFHINILGCYNLKLNDLKITAHADSSKDILVSEVF---CGPG---QGISVGSLGKGIKDEEVVG 211 (321)
Q Consensus 144 I~~iti~ns~------~~~i~~~~s~nv~i~nv~I~~~~~~s~nI~I~n~~---~~~~---~GI~iGS~G~~~~~~~v~n 211 (321)
|+++++.... .-.+++..+++++++|+++...... .+.+..++ +... .++.+-. .-.+
T Consensus 96 i~nl~i~~~~~~~~~~~~~i~~~~~~~~~i~nv~~~~~~~~--~i~~~~~~~~~~~~~~~~~~~~~~~--------~~~~ 165 (225)
T PF12708_consen 96 IRNLTIDGNGIDPNNNNNGIRFNSSQNVSISNVRIENSGGD--GIYFNTGTDYRIIGSTHVSGIFIDN--------GSNN 165 (225)
T ss_dssp EEEEEEEETCGCE-SCEEEEEETTEEEEEEEEEEEES-SS---SEEEECCEECEEECCEEEEEEEEES--------CEEE
T ss_pred EEeeEEEcccccCCCCceEEEEEeCCeEEEEeEEEEccCcc--EEEEEccccCcEeecccceeeeecc--------ceeE
Confidence 6777666543 2458888899999999988875443 23333111 1111 0222211 1255
Q ss_pred EEEEeeEEEeccceEEEEeeCCCCceeeeCcEEeeeEEec-CCccEEEEeeecCCCCCCCCCCCCCCCEEEEeeEEEecC
Q 047946 212 LTVRNCTFTCTSNGVRVKTWPDSHIGIASNFTFEDIVMNN-VENPIVIDQLYCPYNKCNIKPKDSMPNIEIGNRNLVYNG 290 (321)
Q Consensus 212 I~v~n~~i~~~~~gi~ikt~~g~~~g~v~nIt~~ni~~~~-v~~~i~i~~~y~~~~~~~~~ps~~~~ni~~~nI~i~~~~ 290 (321)
+.+.|+.+.....|+... . ++++++|+.+++ ...+|.+... .++.++|+.++...
T Consensus 166 ~~~~~~~~~~~~~g~~~~--------~-~~~~i~n~~~~~~~~~gi~i~~~---------------~~~~i~n~~i~~~~ 221 (225)
T PF12708_consen 166 VIVNNCIFNGGDNGIILG--------N-NNITISNNTFEGNCGNGINIEGG---------------SNIIISNNTIENCD 221 (225)
T ss_dssp EEEECEEEESSSCSEECE--------E-EEEEEECEEEESSSSESEEEEEC---------------SEEEEEEEEEESSS
T ss_pred EEECCccccCCCceeEee--------c-ceEEEEeEEECCccceeEEEECC---------------eEEEEEeEEEECCc
Confidence 667777777777773111 1 789999999987 5678888663 34777777776543
No 74
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=94.66 E-value=0.13 Score=45.21 Aligned_cols=90 Identities=17% Similarity=0.263 Sum_probs=55.3
Q ss_pred eEEEEE-ceeeEEEEeeEEecC----------------CCC-----cccEEEEeEEEcCC---------Ce-eEEeecCC
Q 047946 155 FHINIL-GCYNLKLNDLKITAH----------------ADS-----SKDILVSEVFCGPG---------QG-ISVGSLGK 202 (321)
Q Consensus 155 ~~i~~~-~s~nv~i~nv~I~~~----------------~~~-----s~nI~I~n~~~~~~---------~G-I~iGS~G~ 202 (321)
+++.+. .++||.|+|++|+.. .|. ++||.|.+|++..+ +| +.+.
T Consensus 37 ~G~~i~~~~~NVIirNl~~~~~~~~~~~~~~~~~~~~~~Dai~i~~~~nVWIDH~sfs~~~~~~~~~~~Dg~idi~---- 112 (200)
T PF00544_consen 37 GGLRIIKGASNVIIRNLRFRNVPVDPGPDWSGDGDSSDGDAISIDNSSNVWIDHCSFSWGNFECNSDSSDGLIDIK---- 112 (200)
T ss_dssp SEEEEEESCEEEEEES-EEECEEEECSTEEETTEEECS--SEEEESTEEEEEES-EEEETTS-GGGSSSSSSEEEE----
T ss_pred ceEEEecCCCeEEEECCEEEeccccCCcccCCCccccCCCeEEEEecccEEEeccEEeccccccccccCCceEEEE----
Confidence 455555 899999999999982 111 78999999998644 23 4443
Q ss_pred CCCCCcEEEEEEEeeEEEeccceEEEEeeCCCCceeeeCcEEeeeEEecC
Q 047946 203 GIKDEEVVGLTVRNCTFTCTSNGVRVKTWPDSHIGIASNFTFEDIVMNNV 252 (321)
Q Consensus 203 ~~~~~~v~nI~v~n~~i~~~~~gi~ikt~~g~~~g~v~nIt~~ni~~~~v 252 (321)
....+|+|++|.|.+...+.-+........-.-.+|||-+....++
T Consensus 113 ----~~s~~vTiS~n~f~~~~k~~l~G~~d~~~~~~~~~vT~hhN~f~~~ 158 (200)
T PF00544_consen 113 ----KGSDNVTISNNIFDNHNKTMLIGSSDSNSTDRGLRVTFHHNYFANT 158 (200)
T ss_dssp ----SSTEEEEEES-EEEEEEETCEESSCTTCGGGTTEEEEEES-EEEEE
T ss_pred ----eCCceEEEEchhccccccccccCCCCCccccCCceEEEEeEEECch
Confidence 3458999999999987666555443211000116777777777654
No 75
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=94.01 E-value=5.6 Score=37.58 Aligned_cols=43 Identities=16% Similarity=-0.018 Sum_probs=29.7
Q ss_pred eeEEEEeecceEEeceeEeCC-------CCeEEEEEceeeEEEEeeEEec
Q 047946 132 TPIRFNFLNDSTITGIKSVDS-------RYFHINILGCYNLKLNDLKITA 174 (321)
Q Consensus 132 ~~i~~~~~~nv~I~~iti~ns-------~~~~i~~~~s~nv~i~nv~I~~ 174 (321)
..+.+.++.+++|++.++.-- ..-+|++.+++...|.+-.|.-
T Consensus 121 ~Gi~l~~s~d~~i~~n~i~G~~~~r~~~rGnGI~vyNa~~a~V~~ndisy 170 (408)
T COG3420 121 FGIYLHGSADVRIEGNTIQGLADLRVAERGNGIYVYNAPGALVVGNDISY 170 (408)
T ss_pred eEEEEeccCceEEEeeEEeeccccchhhccCceEEEcCCCcEEEcCcccc
Confidence 357788888888888888632 2356777777777776655543
No 76
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=91.31 E-value=2.1 Score=38.81 Aligned_cols=78 Identities=22% Similarity=0.178 Sum_probs=48.5
Q ss_pred EEEceeeEEEEeeEEecCCCCcccEEEEeEEEcCCCeeEEeecCCCCCCCcEEEEEEEeeEEEec-cceEEEEeeCCCCc
Q 047946 158 NILGCYNLKLNDLKITAHADSSKDILVSEVFCGPGQGISVGSLGKGIKDEEVVGLTVRNCTFTCT-SNGVRVKTWPDSHI 236 (321)
Q Consensus 158 ~~~~s~nv~i~nv~I~~~~~~s~nI~I~n~~~~~~~GI~iGS~G~~~~~~~v~nI~v~n~~i~~~-~~gi~ikt~~g~~~ 236 (321)
.+...++.+|++++|.++.. ..+-||.|.| .+.+|+||+|.++ ..|+.+.... . .
T Consensus 92 tI~~~~~~~i~GvtItN~n~------------~~g~Gi~Ies----------s~~tI~Nntf~~~~~~GI~v~g~~-~-~ 147 (246)
T PF07602_consen 92 TIILANNATISGVTITNPNI------------ARGTGIWIES----------SSPTIANNTFTNNGREGIFVTGTS-A-N 147 (246)
T ss_pred EEEecCCCEEEEEEEEcCCC------------CcceEEEEec----------CCcEEEeeEEECCccccEEEEeee-c-C
Confidence 33445566777777776521 1245788854 2566777777773 6687765331 0 1
Q ss_pred eeeeCcEEeeeEEecCCccEEEE
Q 047946 237 GIASNFTFEDIVMNNVENPIVID 259 (321)
Q Consensus 237 g~v~nIt~~ni~~~~v~~~i~i~ 259 (321)
..+.++++++..+.+...+|.+.
T Consensus 148 ~~i~~~vI~GN~~~~~~~Gi~i~ 170 (246)
T PF07602_consen 148 PGINGNVISGNSIYFNKTGISIS 170 (246)
T ss_pred CcccceEeecceEEecCcCeEEE
Confidence 45677888888887766676664
No 77
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=82.30 E-value=26 Score=33.89 Aligned_cols=79 Identities=19% Similarity=0.233 Sum_probs=57.9
Q ss_pred EEceeeEEEEeeEEecCC-CC------cccEEEEeEEEcCCCeeEEeecCCCCCCCcEEEEEEEeeEEEeccceEEEEee
Q 047946 159 ILGCYNLKLNDLKITAHA-DS------SKDILVSEVFCGPGQGISVGSLGKGIKDEEVVGLTVRNCTFTCTSNGVRVKTW 231 (321)
Q Consensus 159 ~~~s~nv~i~nv~I~~~~-~~------s~nI~I~n~~~~~~~GI~iGS~G~~~~~~~v~nI~v~n~~i~~~~~gi~ikt~ 231 (321)
+.+-.+|++.|+++.... .. ..++++.+|.+.+-+|.++-+. ....|+.|+|..+-.|++-+..
T Consensus 117 V~gM~~VtF~ni~F~~~~~~~g~~f~~~t~~~~hgC~F~gf~g~cl~~~---------~~~~VrGC~F~~C~~gi~~~~~ 187 (386)
T PF01696_consen 117 VVGMEGVTFVNIRFEGRDTFSGVVFHANTNTLFHGCSFFGFHGTCLESW---------AGGEVRGCTFYGCWKGIVSRGK 187 (386)
T ss_pred EeeeeeeEEEEEEEecCCccceeEEEecceEEEEeeEEecCcceeEEEc---------CCcEEeeeEEEEEEEEeecCCc
Confidence 445567888899888776 22 8899999999998888888654 4567899999988888743321
Q ss_pred CCCCceeeeCcEEeeeEE
Q 047946 232 PDSHIGIASNFTFEDIVM 249 (321)
Q Consensus 232 ~g~~~g~v~nIt~~ni~~ 249 (321)
. .-.|++-+|+.+.+
T Consensus 188 ~---~lsVk~C~FekC~i 202 (386)
T PF01696_consen 188 S---KLSVKKCVFEKCVI 202 (386)
T ss_pred c---eEEeeheeeeheEE
Confidence 1 24567777777765
No 78
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=80.45 E-value=18 Score=34.26 Aligned_cols=116 Identities=16% Similarity=0.134 Sum_probs=62.4
Q ss_pred EEEcC-CeEEeccEEEeccccccCCccCCCCCCCCCCeeEEEEeecceEEeceeEeCCCCeEEEEEceeeEEEEeeEEec
Q 047946 96 FSIDT-SLSLAKGTFHGQGETAWPLNQCHKNSDCQLPTPIRFNFLNDSTITGIKSVDSRYFHINILGCYNLKLNDLKITA 174 (321)
Q Consensus 96 i~~~~-ni~I~GG~idG~G~~~w~~~~~~~~~~~~rp~~i~~~~~~nv~I~~iti~ns~~~~i~~~~s~nv~i~nv~I~~ 174 (321)
+...- ++.|+|-+..|.|..-.+ .. .-.+.-.....-.|+.-.++. ..++|.+..+.++.+.+.+|..
T Consensus 72 vtv~aP~~~v~Gl~vr~sg~~lp~-------m~---agI~v~~~at~A~Vr~N~l~~-n~~Gi~l~~s~d~~i~~n~i~G 140 (408)
T COG3420 72 VTVAAPDVIVEGLTVRGSGRSLPA-------MD---AGIFVGRTATGAVVRHNDLIG-NSFGIYLHGSADVRIEGNTIQG 140 (408)
T ss_pred EEEeCCCceeeeEEEecCCCCccc-------cc---ceEEeccCcccceEEcccccc-cceEEEEeccCceEEEeeEEee
Confidence 55555 777777555555542111 00 111222233333444444433 2467888888888888888887
Q ss_pred CCCC-------------cccEEEEeEEEcCC-CeeEEeecCCCCCCCcEEEEEEEeeEEEeccceE-EEEee
Q 047946 175 HADS-------------SKDILVSEVFCGPG-QGISVGSLGKGIKDEEVVGLTVRNCTFTCTSNGV-RVKTW 231 (321)
Q Consensus 175 ~~~~-------------s~nI~I~n~~~~~~-~GI~iGS~G~~~~~~~v~nI~v~n~~i~~~~~gi-~ikt~ 231 (321)
..+- +.+..|....+..+ +||-.- .-+.-.|+++.|...+.|. ++.|.
T Consensus 141 ~~~~r~~~rGnGI~vyNa~~a~V~~ndisy~rDgIy~~---------~S~~~~~~gnr~~~~RygvHyM~t~ 203 (408)
T COG3420 141 LADLRVAERGNGIYVYNAPGALVVGNDISYGRDGIYSD---------TSQHNVFKGNRFRDLRYGVHYMYTN 203 (408)
T ss_pred ccccchhhccCceEEEcCCCcEEEcCccccccceEEEc---------ccccceecccchhheeeeEEEEecc
Confidence 6542 45555555554433 355542 2355566777777777775 34443
No 79
>PLN02698 Probable pectinesterase/pectinesterase inhibitor
Probab=77.48 E-value=32 Score=34.55 Aligned_cols=56 Identities=11% Similarity=-0.107 Sum_probs=38.8
Q ss_pred EEeecceEEeceeEeCCCCe----EEEE-EceeeEEEEeeEEecCCCC----cccEEEEeEEEcC
Q 047946 136 FNFLNDSTITGIKSVDSRYF----HINI-LGCYNLKLNDLKITAHADS----SKDILVSEVFCGP 191 (321)
Q Consensus 136 ~~~~~nv~I~~iti~ns~~~----~i~~-~~s~nv~i~nv~I~~~~~~----s~nI~I~n~~~~~ 191 (321)
....+++..+||+++|+... .+.+ ...+...+.+|++.+..|- ...-.+++|++.+
T Consensus 266 ~v~~~~F~a~nitf~Ntag~~~~QAvAl~v~~D~~~fy~c~~~G~QDTLy~~~~rqyy~~C~I~G 330 (497)
T PLN02698 266 TITGDGFIARDIGFKNAAGPKGEQAIALSITSDHSVLYRCSIAGYQDTLYAAALRQFYRECDIYG 330 (497)
T ss_pred EEECCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEcceeecccchheeCCCcEEEEeeEEEe
Confidence 34578999999999998652 2222 2478888999999987764 3334666666653
No 80
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina. Disaggregatases cause aggregates to separate into single cells [] and contain parallel beta-helix repeats. Also see IPR010671 from INTERPRO.
Probab=74.65 E-value=33 Score=29.70 Aligned_cols=23 Identities=17% Similarity=0.088 Sum_probs=16.0
Q ss_pred cceEEeceeEeCCCCeEEEEEce
Q 047946 140 NDSTITGIKSVDSRYFHINILGC 162 (321)
Q Consensus 140 ~nv~I~~iti~ns~~~~i~~~~s 162 (321)
+++.|-+=+|-+...++|-+.+.
T Consensus 2 ~dIEIYnN~I~~T~g~GIWl~gy 24 (198)
T PF08480_consen 2 DDIEIYNNTIYNTYGPGIWLFGY 24 (198)
T ss_pred CceEEecceeecccCceEEEEec
Confidence 46777777777777777766554
No 81
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue. It catalyses the eliminative cleavage of pectate to produce oligosaccharides with 4-deoxy-alpha-D-gluc-4-enuronosyl groups at their non-reducing ends. Pectate lyase is an extracellular enzyme and is induced by pectin. It is subject to self-catabolite repression, and has been implicated in plant disease. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail []. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization.; GO: 0030570 pectate lyase activity, 0005576 extracellular region; PDB: 3T9G_B 3B90_B 3B8Y_A 3B4N_B 1EE6_A.
Probab=71.85 E-value=72 Score=28.31 Aligned_cols=117 Identities=9% Similarity=0.053 Sum_probs=58.8
Q ss_pred eEEEEeecceEEeceeEeCCCCeEEEEEceeeEEEEeeEEecCCCC------cc-cEEEEeEEEcCCC--eeEEeecCCC
Q 047946 133 PIRFNFLNDSTITGIKSVDSRYFHINILGCYNLKLNDLKITAHADS------SK-DILVSEVFCGPGQ--GISVGSLGKG 203 (321)
Q Consensus 133 ~i~~~~~~nv~I~~iti~ns~~~~i~~~~s~nv~i~nv~I~~~~~~------s~-nI~I~n~~~~~~~--GI~iGS~G~~ 203 (321)
++.+. +..+|+|+.|-.+...+||-.+ +-+|+||....-.++ .. .++|.+.-..+.. -|-+-
T Consensus 56 vF~le--~GatlkNvIiG~~~~dGIHC~G--~Ctl~NVwwedVcEDA~T~kg~~~~~~I~ggga~~A~DKV~Q~N----- 126 (215)
T PF03211_consen 56 VFILE--DGATLKNVIIGANQADGIHCKG--SCTLENVWWEDVCEDAATFKGDGGTVTIIGGGARNASDKVFQHN----- 126 (215)
T ss_dssp SEEEE--TTEEEEEEEETSS-TT-EEEES--CEEEEEEEESS-SSESEEEESSEEEEEEESTEEEEEEEEEEEE------
T ss_pred EEEec--CCCEEEEEEEcCCCcCceEEcC--CEEEEEEEecccceeeeEEcCCCceEEEeCCcccCCCccEEEec-----
Confidence 44444 4789999988778888999887 567888777654433 22 3333333222111 12221
Q ss_pred CCCCcEEEEEEEeeEEEeccceEEEEeeCCCC--ceeeeCcEEeeeEEecCCccEEEEeeecC
Q 047946 204 IKDEEVVGLTVRNCTFTCTSNGVRVKTWPDSH--IGIASNFTFEDIVMNNVENPIVIDQLYCP 264 (321)
Q Consensus 204 ~~~~~v~nI~v~n~~i~~~~~gi~ikt~~g~~--~g~v~nIt~~ni~~~~v~~~i~i~~~y~~ 264 (321)
.--.+.|+|-+.. +.|--..+..+-. ++.-|.|++++........-+-|.+.|.+
T Consensus 127 ----g~Gtv~I~nF~a~--d~GKl~RSCGnC~~~~~~~r~v~v~~~~~~~~~~~~giN~N~gD 183 (215)
T PF03211_consen 127 ----GGGTVTIKNFYAE--DFGKLYRSCGNCSNNGGPRRHVVVNNVVAGPGNSLVGINRNYGD 183 (215)
T ss_dssp ----SSEEEEEEEEEEE--EEEEEEEE-TTETS----EEEEEEEEEEEEEEEEEEEEEEGGTT
T ss_pred ----CceeEEEEeEEEc--CCCEEEEeCCCCCCCCCcceEEEEeeEEecCCcEEEEEECCCCC
Confidence 1124666664444 3343333332211 13446677776665544445566677765
No 82
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional
Probab=68.91 E-value=24 Score=32.77 Aligned_cols=103 Identities=16% Similarity=0.228 Sum_probs=56.5
Q ss_pred cceEEeceeEeCCCCeEEEEEceeeEEEEeeEEecC--CCC--------------cccEEEEeEEEcCCCeeEEee---c
Q 047946 140 NDSTITGIKSVDSRYFHINILGCYNLKLNDLKITAH--ADS--------------SKDILVSEVFCGPGQGISVGS---L 200 (321)
Q Consensus 140 ~nv~I~~iti~ns~~~~i~~~~s~nv~i~nv~I~~~--~~~--------------s~nI~I~n~~~~~~~GI~iGS---~ 200 (321)
+|+.+.++|--|... -+|+.+-++..|+|++-.+- ..+ |.|..|.|+.+..+.|+-||- -
T Consensus 246 knfvvanitgs~crq-lvhvengkhfvirnvkaknitpdfskkagidnatvaiygcdnfvidni~mvnsagmligygvik 324 (464)
T PRK10123 246 KNFVVANITGSDCRQ-LIHVENGKHFVIRNIKAKNITPDFSKKAGIDNATVAIYGCDNFVIDNIEMINSAGMLIGYGVIK 324 (464)
T ss_pred hhEEEEeccCcChhh-eEEecCCcEEEEEeeeccccCCCchhhcCCCcceEEEEcccceEEeccccccccccEEEeeeee
Confidence 455555555444322 35666777777777776542 211 888888888887777776653 1
Q ss_pred CCCCCCCcEEEEEEEeeEEEec-----cceEEEEeeCCCCceeeeCcEEeeeEEe
Q 047946 201 GKGIKDEEVVGLTVRNCTFTCT-----SNGVRVKTWPDSHIGIASNFTFEDIVMN 250 (321)
Q Consensus 201 G~~~~~~~v~nI~v~n~~i~~~-----~~gi~ikt~~g~~~g~v~nIt~~ni~~~ 250 (321)
|.|- .--+|....|+.+.++ -.||.|.+-. ..+=|-+.|+.|+
T Consensus 325 g~yl--sipqnfkln~i~ldn~~l~yklrgiqissgn-----atsfvaitn~~mk 372 (464)
T PRK10123 325 GKYL--SIPQNFKLNNIQLDNTHLAYKLRGIQISAGN-----AVSFVALTNIEMK 372 (464)
T ss_pred ccEe--cccccceeceEeecccccceeeeeeEeccCC-----cceEEEEeeeehh
Confidence 2221 1234555555555554 3566665422 2244455555554
No 83
>smart00710 PbH1 Parallel beta-helix repeats. The tertiary structures of pectate lyases and rhamnogalacturonase A show a stack of parallel beta strands that are coiled into a large helix. Each coil of the helix represents a structural repeat that, in some homologues, can be recognised from sequence information alone. Conservation of asparagines might be connected with asparagine-ladders that contribute to the stability of the fold. Proteins containing these repeats most often are enzymes with polysaccharide substrates.
Probab=63.65 E-value=8.1 Score=20.74 Aligned_cols=21 Identities=19% Similarity=0.332 Sum_probs=13.9
Q ss_pred EEEEEEeeEEEeccc-eEEEEe
Q 047946 210 VGLTVRNCTFTCTSN-GVRVKT 230 (321)
Q Consensus 210 ~nI~v~n~~i~~~~~-gi~ikt 230 (321)
.+++|++|+|.+... |+.+..
T Consensus 2 ~~~~i~~n~i~~~~~~Gi~i~~ 23 (26)
T smart00710 2 SNVTIENNTIRNNGGDGIYIGG 23 (26)
T ss_pred CCEEEECCEEEeCCCCcEEEec
Confidence 356777777777665 676653
No 84
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies). This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.
Probab=63.12 E-value=24 Score=22.39 Aligned_cols=40 Identities=15% Similarity=0.217 Sum_probs=32.9
Q ss_pred EEEEeecceEEeceeEeCCCCeEEEEEceeeEEEEeeEEec
Q 047946 134 IRFNFLNDSTITGIKSVDSRYFHINILGCYNLKLNDLKITA 174 (321)
Q Consensus 134 i~~~~~~nv~I~~iti~ns~~~~i~~~~s~nv~i~nv~I~~ 174 (321)
+.+..+.+.+|++=++.+... +|++..+++-++++-++..
T Consensus 2 I~l~~s~~~~i~~N~i~~~~~-GI~~~~s~~n~i~~N~~~~ 41 (44)
T TIGR03804 2 IYLESSSNNTLENNTASNNSY-GIYLTDSSNNTLSNNTASS 41 (44)
T ss_pred EEEEecCCCEEECcEEeCCCC-EEEEEeCCCCEeECCEEEc
Confidence 567778888899999999888 9999998888887777654
No 85
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina. Disaggregatases cause aggregates to separate into single cells [] and contain parallel beta-helix repeats. Also see IPR010671 from INTERPRO.
Probab=49.78 E-value=58 Score=28.21 Aligned_cols=68 Identities=13% Similarity=0.144 Sum_probs=35.0
Q ss_pred cccEEEEeEEEcC-C--Cee-EEeecCCCCCCCcEEEEEEEeeEEEeccce-EEEEeeCC---CC-ceeeeCcEEeeeEE
Q 047946 179 SKDILVSEVFCGP-G--QGI-SVGSLGKGIKDEEVVGLTVRNCTFTCTSNG-VRVKTWPD---SH-IGIASNFTFEDIVM 249 (321)
Q Consensus 179 s~nI~I~n~~~~~-~--~GI-~iGS~G~~~~~~~v~nI~v~n~~i~~~~~g-i~ikt~~g---~~-~g~v~nIt~~ni~~ 249 (321)
.+||+|.+..+.. | ..+ .+|-. ...+++|.+|+|++|.+..++ +.-+-..+ .. .|+. .++||..|
T Consensus 33 a~nVhIhhN~fY~tGtn~~~~wvGGI----v~sGF~ntlIENNVfDG~y~aai~~~y~~~~~sp~gsgyt--tivRNNII 106 (198)
T PF08480_consen 33 AKNVHIHHNIFYDTGTNPNIDWVGGI----VTSGFYNTLIENNVFDGVYHAAIAQMYPDYDLSPKGSGYT--TIVRNNII 106 (198)
T ss_pred cccEEEECcEeecCCcCCCCceeeeE----EeccccccEEEeeeecccccceEEEEecccccCCCCCceE--EEEEcceE
Confidence 5688888888763 1 111 11111 124567888888888876543 43321111 01 1333 56666666
Q ss_pred ecC
Q 047946 250 NNV 252 (321)
Q Consensus 250 ~~v 252 (321)
.|.
T Consensus 107 ~NT 109 (198)
T PF08480_consen 107 VNT 109 (198)
T ss_pred eee
Confidence 553
No 86
>PF09251 PhageP22-tail: Salmonella phage P22 tail-spike; InterPro: IPR015331 This entry is represented by the Bacteriophage P22, Gp9, tailspike protein (TSP). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The TSP C-terminal domain adopts a structure that consists of a single-stranded right-handed beta-helix, which in turn is made of parallel beta-strands and short turns. They are required for recognition of the 0-antigenic repeating units of the cell surface, and for subsequent infection of the bacterial cell by the phage []. ; PDB: 1QA3_A 1QRB_A 2XC1_C 1QA2_A 1TYX_A 2VFQ_A 2VFO_A 1TYU_A 2VFN_A 1QA1_A ....
Probab=48.65 E-value=70 Score=31.35 Aligned_cols=57 Identities=21% Similarity=0.467 Sum_probs=31.7
Q ss_pred cccEEEEeEEEcCCCeeEEeecCCCCCCCcEEEEEEEeeEEEeccceEEEEeeCCCCceeeeCcEEeeeEEec
Q 047946 179 SKDILVSEVFCGPGQGISVGSLGKGIKDEEVVGLTVRNCTFTCTSNGVRVKTWPDSHIGIASNFTFEDIVMNN 251 (321)
Q Consensus 179 s~nI~I~n~~~~~~~GI~iGS~G~~~~~~~v~nI~v~n~~i~~~~~gi~ikt~~g~~~g~v~nIt~~ni~~~~ 251 (321)
-.|=.|+|+...+.+|+-+|--|+ ...++||++++| ...|+.+++. +=+|.||++.+
T Consensus 310 PtnHiidNi~~~~~lGVG~~~DG~---~~yvsni~~~d~----~g~G~~~~~~---------~~~ftNitvId 366 (549)
T PF09251_consen 310 PTNHIIDNILVRGSLGVGIGMDGK---GGYVSNITVQDC----AGAGIFIRGT---------NKVFTNITVID 366 (549)
T ss_dssp ----EEEEEEEES-SSESCEEECC---S-EEEEEEEES-----SSESEEEECC---------S-EEEEEEEES
T ss_pred chhhhhhhhheeccceeeeeecCC---CceEeeEEeecc----cCCceEEeec---------CCceeeeEEEe
Confidence 456677888877778877765542 456777777766 3456666643 34566666643
No 87
>PF09251 PhageP22-tail: Salmonella phage P22 tail-spike; InterPro: IPR015331 This entry is represented by the Bacteriophage P22, Gp9, tailspike protein (TSP). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The TSP C-terminal domain adopts a structure that consists of a single-stranded right-handed beta-helix, which in turn is made of parallel beta-strands and short turns. They are required for recognition of the 0-antigenic repeating units of the cell surface, and for subsequent infection of the bacterial cell by the phage []. ; PDB: 1QA3_A 1QRB_A 2XC1_C 1QA2_A 1TYX_A 2VFQ_A 2VFO_A 1TYU_A 2VFN_A 1QA1_A ....
Probab=47.78 E-value=1.9e+02 Score=28.45 Aligned_cols=68 Identities=18% Similarity=0.161 Sum_probs=31.7
Q ss_pred cccEEEEeEEE-cC-CCeeEEeecCCCC---------------CCCcEEEEEEEeeEEEeccceEEEEeeCCCCceeeeC
Q 047946 179 SKDILVSEVFC-GP-GQGISVGSLGKGI---------------KDEEVVGLTVRNCTFTCTSNGVRVKTWPDSHIGIASN 241 (321)
Q Consensus 179 s~nI~I~n~~~-~~-~~GI~iGS~G~~~---------------~~~~v~nI~v~n~~i~~~~~gi~ikt~~g~~~g~v~n 241 (321)
+-|..+++... .. =+|+.+|+-...+ -..--.|=.|+|+...++. |+.+. ..+++++|+|
T Consensus 263 nYnLqF~d~~~i~~~~DG~Dl~aDtg~~~~~dR~~D~~laqYp~~qLPtnHiidNi~~~~~l-GVG~~--~DG~~~yvsn 339 (549)
T PF09251_consen 263 NYNLQFRDSVTISPVWDGFDLGADTGMGPETDRPGDYPLAQYPWHQLPTNHIIDNILVRGSL-GVGIG--MDGKGGYVSN 339 (549)
T ss_dssp EBS-EEEEEEEES-SSESEEE-SS-SSSTTS--TTS--TTTS-TT------EEEEEEEES-S-SESCE--EECCS-EEEE
T ss_pred eeeEEEeccceEEEeecceeccCCCCCCCCccCCCCcchhhCchhhCchhhhhhhhheeccc-eeeee--ecCCCceEee
Confidence 67888888763 22 2477777642211 1111234456666666543 44332 2234689998
Q ss_pred cEEeeeEE
Q 047946 242 FTFEDIVM 249 (321)
Q Consensus 242 It~~ni~~ 249 (321)
|+.+++.-
T Consensus 340 i~~~d~~g 347 (549)
T PF09251_consen 340 ITVQDCAG 347 (549)
T ss_dssp EEEES-SS
T ss_pred EEeecccC
Confidence 88887764
No 88
>TIGR02837 spore_II_R stage II sporulation protein R. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage II sporulation protein R.
Probab=46.08 E-value=15 Score=31.23 Aligned_cols=9 Identities=33% Similarity=0.792 Sum_probs=6.9
Q ss_pred EeccccccC
Q 047946 110 HGQGETAWP 118 (321)
Q Consensus 110 dG~G~~~w~ 118 (321)
+|+|+.||=
T Consensus 142 ~g~G~NWWC 150 (168)
T TIGR02837 142 EGAGANWWC 150 (168)
T ss_pred CcCCcceEE
Confidence 467889993
No 89
>PF09551 Spore_II_R: Stage II sporulation protein R (spore_II_R); InterPro: IPR014202 This entry is designated stage II sporulation protein R. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species. SpoIIR is a signalling protein that links the activation of sigma E to the transcriptional activity of sigma F during sporulation [, ].
Probab=44.24 E-value=17 Score=29.60 Aligned_cols=9 Identities=33% Similarity=0.870 Sum_probs=6.8
Q ss_pred EeccccccC
Q 047946 110 HGQGETAWP 118 (321)
Q Consensus 110 dG~G~~~w~ 118 (321)
+|+|..||=
T Consensus 107 ~g~G~NWWC 115 (130)
T PF09551_consen 107 EGKGHNWWC 115 (130)
T ss_pred CccCcceEE
Confidence 467889993
No 90
>PF10162 G8: G8 domain; InterPro: IPR019316 This entry represents a domain found in disease proteins PKHD1 and KIAA1199 and is named G8 after its 8 conserved glycines. It is predicted to contain 10 beta strands and an alpha helix [].
Probab=38.57 E-value=63 Score=25.83 Aligned_cols=32 Identities=19% Similarity=0.222 Sum_probs=18.7
Q ss_pred ccEEEecCceEEEeeeeeecccCCceEEEEcCeEEE
Q 047946 60 KGTVLVPPGKYLVSFAEFEGPCKASISFQLQGLLDL 95 (321)
Q Consensus 60 g~~v~vP~G~y~~~~l~l~g~~~s~v~l~i~G~l~~ 95 (321)
+..|+||+|...+-..... .--.|.+.|+|.+
T Consensus 12 g~~V~I~~g~~v~lD~~~~----~l~~l~I~G~L~f 43 (125)
T PF10162_consen 12 GDNVVIPAGQTVLLDVSTP----KLGSLIIGGTLIF 43 (125)
T ss_pred CCEEEECCCCEEEEcCCCh----heeEEEEEEEEEE
Confidence 5799999997543222211 1124556788765
No 91
>PF05342 Peptidase_M26_N: M26 IgA1-specific Metallo-endopeptidase N-terminal region; InterPro: IPR008006 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases corresponds to MEROPS peptidase family M26 (clan MA(E)). The active site residues for members of this family and family M4 occur in the motif HEXXH. The type example is IgA1-specific metalloendopeptidase from Streptococcus sanguis (Q59986 from SWISSPROT).; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0016021 integral to membrane
Probab=38.22 E-value=18 Score=32.85 Aligned_cols=9 Identities=33% Similarity=0.752 Sum_probs=6.0
Q ss_pred cCceEEEee
Q 047946 66 PPGKYLVSF 74 (321)
Q Consensus 66 P~G~y~~~~ 74 (321)
|.|+|.++.
T Consensus 154 p~Gty~Lga 162 (250)
T PF05342_consen 154 PSGTYKLGA 162 (250)
T ss_pred CCceEEECC
Confidence 567777763
No 92
>PF14262 DUF4353: Domain of unknown function (DUF4353)
Probab=35.37 E-value=1.5e+02 Score=27.13 Aligned_cols=36 Identities=19% Similarity=0.304 Sum_probs=22.7
Q ss_pred ccEEEe-cCceEEEe------eeeeecccCCceEEEEcC-eEEE
Q 047946 60 KGTVLV-PPGKYLVS------FAEFEGPCKASISFQLQG-LLDL 95 (321)
Q Consensus 60 g~~v~v-P~G~y~~~------~l~l~g~~~s~v~l~i~G-~l~~ 95 (321)
+.+|.| .+|+|.++ ++.+.-+-...++|.|+| .|..
T Consensus 6 ~~~vtIt~~GtY~lsGs~~~g~i~V~a~~~~~v~lvL~gv~it~ 49 (264)
T PF14262_consen 6 GSTVTITKAGTYVLSGSLSDGQIVVDAGDTDKVRLVLDGVSITN 49 (264)
T ss_pred CCEEEEcCCEEEEEEEEccCcEEEEEcCCCceEEEEECCeEEeC
Confidence 468888 57899874 244443223458888888 4543
No 93
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=29.47 E-value=4.8e+02 Score=25.73 Aligned_cols=43 Identities=19% Similarity=0.197 Sum_probs=21.7
Q ss_pred EEEeeEEEecc-----ceEEEEeeCCCCceeeeCcEEeeeEEecCCccEEEE
Q 047946 213 TVRNCTFTCTS-----NGVRVKTWPDSHIGIASNFTFEDIVMNNVENPIVID 259 (321)
Q Consensus 213 ~v~n~~i~~~~-----~gi~ikt~~g~~~g~v~nIt~~ni~~~~v~~~i~i~ 259 (321)
+|+++.|.+.. -||||-.. +-.|.|-.|++++-.....++.+-
T Consensus 248 ~V~gN~FiGng~~~~tGGIRIi~~----~H~I~nNY~~gl~g~~~~~~~~v~ 295 (425)
T PF14592_consen 248 TVEGNVFIGNGVKEGTGGIRIIGE----GHTIYNNYFEGLTGTRFRGALAVM 295 (425)
T ss_dssp EEES-EEEE-SSSS-B--EEE-SB----S-EEES-EEEESSB-TTTTSEE-E
T ss_pred eEeccEEecCCCcCCCCceEEecC----CcEEEcceeeccccceeecceeec
Confidence 45566666432 36777633 256788888888766666677643
No 94
>PF04519 Bactofilin: Polymer-forming cytoskeletal; InterPro: IPR007607 This family contains several uncharacterised hypothetical proteins.
Probab=27.90 E-value=2e+02 Score=21.64 Aligned_cols=45 Identities=11% Similarity=0.287 Sum_probs=27.9
Q ss_pred EEEecCceEEEeeeeeecccCCceEEEEcCeEEE-EEEcCCeEEec-cEEEec
Q 047946 62 TVLVPPGKYLVSFAEFEGPCKASISFQLQGLLDL-FSIDTSLSLAK-GTFHGQ 112 (321)
Q Consensus 62 ~v~vP~G~y~~~~l~l~g~~~s~v~l~i~G~l~~-i~~~~ni~I~G-G~idG~ 112 (321)
+..++++....+.+.+. . .+.++|.+.. +...+.+.|.+ +.+.|+
T Consensus 2 ~~~I~~~~~i~G~i~~~----~--~v~i~G~v~G~i~~~g~v~i~~~~~v~G~ 48 (101)
T PF04519_consen 2 TTIIGKGTKIEGDISSD----G--DVRIDGRVEGNIKAEGKVKIGGNGEVKGD 48 (101)
T ss_pred cEEECCCCEEEEEEEEC----c--EEEEEEEEEEEEEEceEEEEcCCCEEEEE
Confidence 35678888777777765 3 4566666554 44433666666 666654
No 95
>PHA00672 hypothetical protein
Probab=27.73 E-value=93 Score=25.20 Aligned_cols=16 Identities=25% Similarity=0.299 Sum_probs=12.9
Q ss_pred cEEEecCceEEEeeee
Q 047946 61 GTVLVPPGKYLVSFAE 76 (321)
Q Consensus 61 ~~v~vP~G~y~~~~l~ 76 (321)
.++.+|+|+-+++.+.
T Consensus 50 Rei~IPkGt~LtG~~h 65 (152)
T PHA00672 50 RTIRIPAGVALTGALI 65 (152)
T ss_pred EEEeccCceeeeeeee
Confidence 5788999999988643
No 96
>PF11429 Colicin_D: Colicin D; InterPro: IPR024440 Colicin D is a bacteriocin that kills target cells by cleaving tRNA(Arg). This entry represents a domain found in the C terminus of colicin D, which is responsible for its catalytic activity []. The domain is also found in some S-type pyocins, which are also bacteriocins.; GO: 0004540 ribonuclease activity; PDB: 1TFO_A 1V74_A 1TFK_A.
Probab=26.91 E-value=76 Score=24.22 Aligned_cols=38 Identities=24% Similarity=0.320 Sum_probs=20.8
Q ss_pred eecCccC-CCCcchHHHHHHHHHHHhhcCCCccEEEecCceEEE
Q 047946 30 KDFGAVA-DGITDDSKAFDTSWREAWNWDGIKGTVLVPPGKYLV 72 (321)
Q Consensus 30 ~dfGA~~-dg~tddt~Aiq~Ai~~ac~~~g~g~~v~vP~G~y~~ 72 (321)
.|||-.+ +.....-..|++||..--... .+|+ .|||+-
T Consensus 10 ~DFGi~~~~~N~~t~~~F~~aI~~hi~~~---~tv~--~GtYr~ 48 (92)
T PF11429_consen 10 GDFGITGTNWNKETLEEFEDAIKEHIKNP---DTVE--KGTYRR 48 (92)
T ss_dssp GGGT------SHHHHHHHHHHHHHHHH-T---T-EE----BETT
T ss_pred cccCcccCCCChhhHHHHHHHHHHHhCCC---CeEe--ccceec
Confidence 5899988 666666788999997654433 4644 899984
No 97
>PF13670 PepSY_2: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification.
Probab=23.78 E-value=2.9e+02 Score=20.01 Aligned_cols=43 Identities=12% Similarity=0.057 Sum_probs=22.5
Q ss_pred hHHHHHHHHHHHhhcCCCccEEEe-cCceEEEeeeeeecccCCceEEEEc
Q 047946 42 DSKAFDTSWREAWNWDGIKGTVLV-PPGKYLVSFAEFEGPCKASISFQLQ 90 (321)
Q Consensus 42 dt~Aiq~Ai~~ac~~~g~g~~v~v-P~G~y~~~~l~l~g~~~s~v~l~i~ 90 (321)
..+++.+++.+..- . -..|-+ -.|.|.+.-..-.| ..+.++++
T Consensus 30 ~~~~~~~~l~~~G~--~-v~~ve~~~~g~yev~~~~~dG---~~~ev~vD 73 (83)
T PF13670_consen 30 SIEQAVAKLEAQGY--Q-VREVEFDDDGCYEVEARDKDG---KKVEVYVD 73 (83)
T ss_pred CHHHHHHHHHhcCC--c-eEEEEEcCCCEEEEEEEECCC---CEEEEEEc
Confidence 56666666643211 1 235666 55578776333222 34667776
No 98
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue. It catalyses the eliminative cleavage of pectate to produce oligosaccharides with 4-deoxy-alpha-D-gluc-4-enuronosyl groups at their non-reducing ends. Pectate lyase is an extracellular enzyme and is induced by pectin. It is subject to self-catabolite repression, and has been implicated in plant disease. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail []. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization.; GO: 0030570 pectate lyase activity, 0005576 extracellular region; PDB: 3T9G_B 3B90_B 3B8Y_A 3B4N_B 1EE6_A.
Probab=21.61 E-value=5.8e+02 Score=22.68 Aligned_cols=155 Identities=17% Similarity=0.174 Sum_probs=67.2
Q ss_pred cEEEecCc-eEEEeeeeee-c--ccC-------CceEEEEc-C-eEEEEEEcC----CeEEec-cEEEeccccccCCccC
Q 047946 61 GTVLVPPG-KYLVSFAEFE-G--PCK-------ASISFQLQ-G-LLDLFSIDT----SLSLAK-GTFHGQGETAWPLNQC 122 (321)
Q Consensus 61 ~~v~vP~G-~y~~~~l~l~-g--~~~-------s~v~l~i~-G-~l~~i~~~~----ni~I~G-G~idG~G~~~w~~~~~ 122 (321)
.++.+++| +|.-+-..+. + .|. ..--+.|+ | +|+-+.+.. .|+-.| -+|+- .||.+. |
T Consensus 20 ~~i~V~aG~~fDG~~k~~~~~~~~~~~~~q~e~q~~vF~le~GatlkNvIiG~~~~dGIHC~G~Ctl~N---VwwedV-c 95 (215)
T PF03211_consen 20 STIVVKAGEVFDGGMKRYDRGPSACGDGGQSEDQDPVFILEDGATLKNVIIGANQADGIHCKGSCTLEN---VWWEDV-C 95 (215)
T ss_dssp S-EEE-TTEEEEEEEEEEEECCCTT--SSSGSC---SEEEETTEEEEEEEETSS-TT-EEEESCEEEEE---EEESS--S
T ss_pred cCeEECCCceEeCCeeEEccCCCccCCCCcCCccceEEEecCCCEEEEEEEcCCCcCceEEcCCEEEEE---EEeccc-c
Confidence 46778888 5755433332 2 121 11224454 5 555444432 677777 56653 577653 1
Q ss_pred CCCCCCCCCeeEEEEeec-ceEEeceeEeCCCCeEEEEEceeeEEEEeeEEecCCCCcccEEEEeEEEcCCCeeEEeecC
Q 047946 123 HKNSDCQLPTPIRFNFLN-DSTITGIKSVDSRYFHINILGCYNLKLNDLKITAHADSSKDILVSEVFCGPGQGISVGSLG 201 (321)
Q Consensus 123 ~~~~~~~rp~~i~~~~~~-nv~I~~iti~ns~~~~i~~~~s~nv~i~nv~I~~~~~~s~nI~I~n~~~~~~~GI~iGS~G 201 (321)
--++.|..-. .+.|.+=-.++++.--|.....-.+.|+|.... +.|--.-|-|
T Consensus 96 --------EDA~T~kg~~~~~~I~ggga~~A~DKV~Q~Ng~Gtv~I~nF~a~------------------d~GKl~RSCG 149 (215)
T PF03211_consen 96 --------EDAATFKGDGGTVTIIGGGARNASDKVFQHNGGGTVTIKNFYAE------------------DFGKLYRSCG 149 (215)
T ss_dssp --------SESEEEESSEEEEEEESTEEEEEEEEEEEE-SSEEEEEEEEEEE------------------EEEEEEEE-T
T ss_pred --------eeeeEEcCCCceEEEeCCcccCCCccEEEecCceeEEEEeEEEc------------------CCCEEEEeCC
Confidence 1245555444 344444444444333444555555555554443 2343344544
Q ss_pred CCCCC-CcEEEEEEEeeEEEeccceEEEEeeCCCCceeeeCcEEee
Q 047946 202 KGIKD-EEVVGLTVRNCTFTCTSNGVRVKTWPDSHIGIASNFTFED 246 (321)
Q Consensus 202 ~~~~~-~~v~nI~v~n~~i~~~~~gi~ikt~~g~~~g~v~nIt~~n 246 (321)
.-... ..-+.|.+++........-+.|-...+. ...++++.+..
T Consensus 150 nC~~~~~~~r~v~v~~~~~~~~~~~~giN~N~gD-~ati~~~~~~~ 194 (215)
T PF03211_consen 150 NCSNNGGPRRHVVVNNVVAGPGNSLVGINRNYGD-TATISNSCIKG 194 (215)
T ss_dssp TETS----EEEEEEEEEEEEEEEEEEEEEEGGTT-TEEEEEEEEEE
T ss_pred CCCCCCCcceEEEEeeEEecCCcEEEEEECCCCC-eEEEEEEEecC
Confidence 43222 2345566665544332222345444433 25555555444
Done!