BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047948
(171 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 38/62 (61%), Gaps = 2/62 (3%)
Query: 91 YNNELFYIILPQITNKLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQEVGQLTFLNHLIL 150
++N + L N LSG IP EIG + +L +L++ N ++GSIP EVG L LN IL
Sbjct: 628 FDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLN--IL 685
Query: 151 DL 152
DL
Sbjct: 686 DL 687
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 29/46 (63%)
Query: 105 NKLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQEVGQLTFLNHLIL 150
N +SG IP E+G L L +L +S N+L+G IPQ + LT L + L
Sbjct: 666 NDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDL 711
Score = 40.0 bits (92), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 27/41 (65%)
Query: 105 NKLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQEVGQLTFL 145
N+L+G+IP IG L +L +L +S N +G+IP E+G L
Sbjct: 500 NRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSL 540
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 28/48 (58%)
Query: 105 NKLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQEVGQLTFLNHLILDL 152
N LSG IPS +G L+ L L + N L G IPQE+ + L LILD
Sbjct: 428 NYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDF 475
Score = 35.4 bits (80), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 35/67 (52%)
Query: 105 NKLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQEVGQLTFLNHLILDLIFLIFWMVQSLV 164
N +G+IP + + L LH+S N L+G+IP +G L+ L L L L L + Q L+
Sbjct: 404 NGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELM 463
Query: 165 LLAIWPT 171
+ T
Sbjct: 464 YVKTLET 470
Score = 34.3 bits (77), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 27/41 (65%)
Query: 105 NKLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQEVGQLTFL 145
N L+G+IPS + T+L + +S N+L G IP+ +G+L L
Sbjct: 476 NDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENL 516
Score = 30.8 bits (68), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 18/32 (56%)
Query: 105 NKLSGQIPSEIGLLTHLTVLHISRNQLNGSIP 136
NKLSG I T L +L+IS NQ G IP
Sbjct: 233 NKLSGDFSRAISTCTELKLLNISSNQFVGPIP 264
Score = 30.0 bits (66), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 21/38 (55%)
Query: 99 ILPQITNKLSGQIPSEIGLLTHLTVLHISRNQLNGSIP 136
IL N SG IP+E+G L L ++ N NG+IP
Sbjct: 518 ILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP 555
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 21/42 (50%)
Query: 105 NKLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQEVGQLTFLN 146
N L G+IP E+ + L L + N L G IP + T LN
Sbjct: 452 NMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLN 493
Score = 26.2 bits (56), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 51/125 (40%), Gaps = 20/125 (16%)
Query: 11 EEGHALVKWKASLKVHSRSLLHSWFLSSVNVTKISPCAWSGIHCNHAGRVVGINLTSMSL 70
E H L+ +K L ++LL W + +PC + G+ C +V I+L+S L
Sbjct: 12 REIHQLISFKDVLP--DKNLLPDW------SSNKNPCTFDGVTC-RDDKVTSIDLSSKPL 62
Query: 71 NGTLLEFPFSSFPHLAYLVLYNNELFYIILPQITNKLSGQIPSEIGLLTHLTVLHISRNQ 130
N FS+ + LF + I +SG LT L +SRN
Sbjct: 63 N-----VGFSAVSSSLLSLTGLESLF-LSNSHINGSVSG-----FKCSASLTSLDLSRNS 111
Query: 131 LNGSI 135
L+G +
Sbjct: 112 LSGPV 116
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 38/62 (61%), Gaps = 2/62 (3%)
Query: 91 YNNELFYIILPQITNKLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQEVGQLTFLNHLIL 150
++N + L N LSG IP EIG + +L +L++ N ++GSIP EVG L LN IL
Sbjct: 625 FDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLN--IL 682
Query: 151 DL 152
DL
Sbjct: 683 DL 684
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 29/46 (63%)
Query: 105 NKLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQEVGQLTFLNHLIL 150
N +SG IP E+G L L +L +S N+L+G IPQ + LT L + L
Sbjct: 663 NDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDL 708
Score = 39.7 bits (91), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 27/42 (64%)
Query: 104 TNKLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQEVGQLTFL 145
N+L+G+IP IG L +L +L +S N +G+IP E+G L
Sbjct: 496 NNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSL 537
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 28/48 (58%)
Query: 105 NKLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQEVGQLTFLNHLILDL 152
N LSG IPS +G L+ L L + N L G IPQE+ + L LILD
Sbjct: 425 NYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDF 472
Score = 35.4 bits (80), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 35/68 (51%)
Query: 104 TNKLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQEVGQLTFLNHLILDLIFLIFWMVQSL 163
N +G+IP + + L LH+S N L+G+IP +G L+ L L L L L + Q L
Sbjct: 400 NNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQEL 459
Query: 164 VLLAIWPT 171
+ + T
Sbjct: 460 MYVKTLET 467
Score = 34.3 bits (77), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 27/41 (65%)
Query: 105 NKLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQEVGQLTFL 145
N L+G+IPS + T+L + +S N+L G IP+ +G+L L
Sbjct: 473 NDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENL 513
Score = 30.8 bits (68), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 18/32 (56%)
Query: 105 NKLSGQIPSEIGLLTHLTVLHISRNQLNGSIP 136
NKLSG I T L +L+IS NQ G IP
Sbjct: 230 NKLSGDFSRAISTCTELKLLNISSNQFVGPIP 261
Score = 30.0 bits (66), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 21/38 (55%)
Query: 99 ILPQITNKLSGQIPSEIGLLTHLTVLHISRNQLNGSIP 136
IL N SG IP+E+G L L ++ N NG+IP
Sbjct: 515 ILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP 552
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 21/42 (50%)
Query: 105 NKLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQEVGQLTFLN 146
N L G+IP E+ + L L + N L G IP + T LN
Sbjct: 449 NMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLN 490
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 33.5 bits (75), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 50/113 (44%), Gaps = 19/113 (16%)
Query: 31 LHSWFLSSVNVTKISPCAWSGIHCNHAGRVVGINLTSMSLNGTLLEFPFSSFPHLAYLVL 90
LH +++ NV+ P S I +V ++ + +L+GTL SS P+L +
Sbjct: 103 LHYLYITHTNVSGAIPDFLSQIK-----TLVTLDFSYNALSGTLPPS-ISSLPNLVGITF 156
Query: 91 YNNELFYIILPQITNKLSGQIPSEIGLLTHL-TVLHISRNQLNGSIPQEVGQL 142
N ++SG IP G + L T + ISRN+L G IP L
Sbjct: 157 DGN------------RISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL 197
Score = 33.1 bits (74), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 37/160 (23%), Positives = 67/160 (41%), Gaps = 27/160 (16%)
Query: 11 EEGHALVKWKASLKVHSRSLLHSWFLSSVNVTKISPCAWSGIHCNHAGRVVGINLTSMSL 70
++ AL++ K L + + L SW ++ + W G+ C+ + +N ++ L
Sbjct: 6 QDKQALLQIKKDL--GNPTTLSSWLPTTDCCNR----TWLGVLCDTDTQTYRVN--NLDL 57
Query: 71 NGTLLEFPF------SSFPHLAYLVLYN-NELFYIILPQITN------------KLSGQI 111
+G L P+ ++ P+L +L + N L I P I +SG I
Sbjct: 58 SGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAI 117
Query: 112 PSEIGLLTHLTVLHISRNQLNGSIPQEVGQLTFLNHLILD 151
P + + L L S N L+G++P + L L + D
Sbjct: 118 PDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFD 157
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 105 NKLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQEVGQLTFL 145
N LSG +P I L +L + N+++G+IP G + L
Sbjct: 135 NALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKL 175
Score = 28.5 bits (62), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 23/35 (65%)
Query: 114 EIGLLTHLTVLHISRNQLNGSIPQEVGQLTFLNHL 148
++GL +L L + N++ G++PQ + QL FL+ L
Sbjct: 239 KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSL 273
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 31.6 bits (70), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 46/104 (44%), Gaps = 22/104 (21%)
Query: 77 FPFSSFPHLAYLVLYNNELFYIILPQITNKLSGQIPSEIGLLTHLTVLHISRNQLNGSIP 136
P + F L +L ELF NKL+ ++P I LTHLT L + +NQL SIP
Sbjct: 103 LPSAVFDRLVHL----KELFMCC-----NKLT-ELPRGIERLTHLTHLALDQNQLK-SIP 151
Query: 137 QEV-GQLTFLNHLIL----------DLIFLIFWMVQSLVLLAIW 169
+L+ L H L D+++L W+ + W
Sbjct: 152 HGAFDRLSSLTHAYLFGNPWDCECRDIMYLRNWVADHTSIAMRW 195
>pdb|1MHQ|A Chain A, Crystal Structure Of Human Gga2 Vhs Domain
pdb|1MHQ|B Chain B, Crystal Structure Of Human Gga2 Vhs Domain
Length = 148
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 18/40 (45%)
Query: 110 QIPSEIGLLTHLTVLHISRNQLNGSIPQEVGQLTFLNHLI 149
Q P E L LTVL + N EV + FLN LI
Sbjct: 48 QSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELI 87
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 28.5 bits (62), Expect = 1.8, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 23/31 (74%), Gaps = 1/31 (3%)
Query: 110 QIPSEIGLLTHLTVLHISRNQLNGSIPQEVG 140
++P+EI L++L VL +S N+L S+P E+G
Sbjct: 261 ELPAEIKNLSNLRVLDLSHNRLT-SLPAELG 290
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 28.1 bits (61), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 28/65 (43%), Gaps = 15/65 (23%)
Query: 74 LLEFPFSSFPHLAYLVLYNNELFYIILPQITNKLSGQIPSE--IGLLTHLTVLHISRNQL 131
L E P H L+L +NEL G+I S+ G L HL L + RNQL
Sbjct: 20 LKEIPRDIPLHTTELLLNDNEL-------------GRISSDGLFGRLPHLVKLELKRNQL 66
Query: 132 NGSIP 136
G P
Sbjct: 67 TGIEP 71
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 27.7 bits (60), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 47/107 (43%), Gaps = 7/107 (6%)
Query: 47 CAWSGIHCNHAG-RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQITN 105
C+ + I CN G V + S + L S PH + L +L + L Q N
Sbjct: 7 CSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKL--TQLTKLSLSQ--N 62
Query: 106 KLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQEV-GQLTFLNHLILD 151
++ LT LT+L++ N+L S+P V +LT L L LD
Sbjct: 63 QIQSLPDGVFDKLTKLTILYLHENKLQ-SLPNGVFDKLTQLKELALD 108
>pdb|1JPL|A Chain A, Gga3 Vhs Domain Complexed With C-Terminal Peptide From
Cation-Independent Mannose 6-Phosphate Receptor
pdb|1JPL|B Chain B, Gga3 Vhs Domain Complexed With C-Terminal Peptide From
Cation-Independent Mannose 6-Phosphate Receptor
pdb|1JPL|C Chain C, Gga3 Vhs Domain Complexed With C-Terminal Peptide From
Cation-Independent Mannose 6-Phosphate Receptor
pdb|1JPL|D Chain D, Gga3 Vhs Domain Complexed With C-Terminal Peptide From
Cation-Independent Mannose 6-Phosphate Receptor
pdb|1JUQ|A Chain A, Gga3 Vhs Domain Complexed With C-Terminal Peptide From
Cation-Dependent Mannose 6-Phosphate Receptor
pdb|1JUQ|B Chain B, Gga3 Vhs Domain Complexed With C-Terminal Peptide From
Cation-Dependent Mannose 6-Phosphate Receptor
pdb|1JUQ|C Chain C, Gga3 Vhs Domain Complexed With C-Terminal Peptide From
Cation-Dependent Mannose 6-Phosphate Receptor
pdb|1JUQ|D Chain D, Gga3 Vhs Domain Complexed With C-Terminal Peptide From
Cation-Dependent Mannose 6-Phosphate Receptor
Length = 171
Score = 27.7 bits (60), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 22/52 (42%), Gaps = 3/52 (5%)
Query: 101 PQITNKLSG---QIPSEIGLLTHLTVLHISRNQLNGSIPQEVGQLTFLNHLI 149
PQI +L Q P E L LTVL EVG+ FLN LI
Sbjct: 48 PQIAVRLLAHKIQSPQEWEALQALTVLEACXKNCGRRFHNEVGKFRFLNELI 99
>pdb|1LF8|A Chain A, Complex Of Gga3-Vhs Domain And Ci-Mpr C-Terminal
Phosphopeptide
pdb|1LF8|B Chain B, Complex Of Gga3-Vhs Domain And Ci-Mpr C-Terminal
Phosphopeptide
pdb|1LF8|C Chain C, Complex Of Gga3-Vhs Domain And Ci-Mpr C-Terminal
Phosphopeptide
pdb|1LF8|D Chain D, Complex Of Gga3-Vhs Domain And Ci-Mpr C-Terminal
Phosphopeptide
Length = 171
Score = 27.7 bits (60), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 22/52 (42%), Gaps = 3/52 (5%)
Query: 101 PQITNKLSG---QIPSEIGLLTHLTVLHISRNQLNGSIPQEVGQLTFLNHLI 149
PQI +L Q P E L LTVL EVG+ FLN LI
Sbjct: 48 PQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELI 99
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 26.6 bits (57), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 47/104 (45%), Gaps = 27/104 (25%)
Query: 47 CAWSGIHCNHAGRVVGINLTSMSLNGTLLE-FPFSSFPHLAYLVLYNNELFYIILPQITN 105
CAW A ++ +NL+S L G++ P P + L L+NN +
Sbjct: 424 CAW-------AESILVLNLSSNMLTGSVFRCLP----PKVKVLDLHNNRIM--------- 463
Query: 106 KLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQEV-GQLTFLNHL 148
IP ++ L L L+++ NQL S+P V +LT L ++
Sbjct: 464 ----SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYI 502
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.138 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,768,818
Number of Sequences: 62578
Number of extensions: 174670
Number of successful extensions: 456
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 408
Number of HSP's gapped (non-prelim): 60
length of query: 171
length of database: 14,973,337
effective HSP length: 92
effective length of query: 79
effective length of database: 9,216,161
effective search space: 728076719
effective search space used: 728076719
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 48 (23.1 bits)