Query 047948
Match_columns 171
No_of_seqs 189 out of 1947
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 04:51:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047948.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047948hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 99.8 3.5E-21 7.7E-26 170.7 10.6 140 9-156 27-201 (968)
2 PLN03150 hypothetical protein; 99.8 5.4E-18 1.2E-22 144.3 10.8 135 6-164 367-511 (623)
3 PLN00113 leucine-rich repeat r 99.3 1E-12 2.2E-17 117.0 5.8 95 60-155 142-248 (968)
4 KOG0617 Ras suppressor protein 99.1 5.4E-12 1.2E-16 90.3 -1.3 83 58-156 33-115 (264)
5 KOG4237 Extracellular matrix p 99.0 2.4E-10 5.2E-15 90.8 4.5 51 52-103 51-111 (498)
6 PF08263 LRRNT_2: Leucine rich 98.9 2.1E-09 4.5E-14 60.0 4.3 41 10-55 2-43 (43)
7 PF13855 LRR_8: Leucine rich r 98.9 1E-09 2.3E-14 65.8 3.3 60 83-155 1-61 (61)
8 KOG4194 Membrane glycoprotein 98.9 1.4E-10 3E-15 96.1 -1.2 44 59-103 270-313 (873)
9 PLN03150 hypothetical protein; 98.9 1.7E-09 3.6E-14 92.7 5.0 86 58-156 442-528 (623)
10 KOG0472 Leucine-rich repeat pr 98.9 6E-10 1.3E-14 88.9 2.1 94 59-156 436-541 (565)
11 PF14580 LRR_9: Leucine-rich r 98.9 1.6E-09 3.4E-14 78.5 3.4 92 59-167 43-146 (175)
12 KOG4194 Membrane glycoprotein 98.9 1.2E-09 2.6E-14 90.8 2.8 37 59-96 198-234 (873)
13 KOG0617 Ras suppressor protein 98.8 3E-10 6.5E-15 81.5 -1.8 93 59-155 57-162 (264)
14 KOG0472 Leucine-rich repeat pr 98.8 2.7E-09 5.9E-14 85.2 2.1 52 104-156 420-471 (565)
15 PF14580 LRR_9: Leucine-rich r 98.7 1.2E-08 2.6E-13 73.9 4.3 94 59-170 20-122 (175)
16 KOG0444 Cytoskeletal regulator 98.7 2.6E-09 5.6E-14 89.7 -0.6 107 59-169 79-205 (1255)
17 PRK15370 E3 ubiquitin-protein 98.7 1.5E-07 3.3E-12 81.9 9.8 24 2-25 54-77 (754)
18 KOG0618 Serine/threonine phosp 98.7 2.1E-09 4.6E-14 92.9 -1.8 92 58-154 383-487 (1081)
19 PF13855 LRR_8: Leucine rich r 98.6 4.9E-08 1.1E-12 58.4 4.2 60 59-131 2-61 (61)
20 KOG0444 Cytoskeletal regulator 98.6 7.6E-09 1.6E-13 87.0 0.5 107 59-168 127-275 (1255)
21 PRK15370 E3 ubiquitin-protein 98.4 4.7E-07 1E-11 78.9 5.8 98 60-168 264-374 (754)
22 PF12799 LRR_4: Leucine Rich r 98.4 2.2E-07 4.8E-12 51.9 2.4 37 119-156 1-37 (44)
23 PRK15387 E3 ubiquitin-protein 98.4 3.3E-07 7.2E-12 79.9 4.5 46 119-165 422-467 (788)
24 KOG0618 Serine/threonine phosp 98.4 5.1E-08 1.1E-12 84.6 -0.5 94 73-169 301-438 (1081)
25 KOG0532 Leucine-rich repeat (L 98.3 1.1E-07 2.3E-12 79.1 -1.0 91 59-156 122-247 (722)
26 cd00116 LRR_RI Leucine-rich re 98.2 3.7E-07 8E-12 71.4 0.3 37 59-96 82-121 (319)
27 KOG1259 Nischarin, modulator o 98.2 4.9E-07 1.1E-11 70.3 0.8 92 60-168 286-406 (490)
28 PRK15387 E3 ubiquitin-protein 98.1 4.8E-06 1E-10 72.8 6.1 13 84-96 343-355 (788)
29 PF12799 LRR_4: Leucine Rich r 98.1 2.4E-06 5.2E-11 47.7 2.7 40 83-136 1-40 (44)
30 PLN03210 Resistant to P. syrin 98.0 1.2E-05 2.6E-10 73.6 7.2 92 59-153 612-714 (1153)
31 cd00116 LRR_RI Leucine-rich re 98.0 9.1E-07 2E-11 69.2 -0.1 97 59-156 138-263 (319)
32 PLN03210 Resistant to P. syrin 98.0 1.1E-05 2.4E-10 73.8 6.5 93 59-156 779-883 (1153)
33 COG4886 Leucine-rich repeat (L 98.0 3.8E-06 8.1E-11 68.1 2.9 95 59-169 117-217 (394)
34 KOG4237 Extracellular matrix p 98.0 1.7E-06 3.7E-11 69.3 0.5 79 78-156 269-359 (498)
35 KOG1259 Nischarin, modulator o 97.8 6.7E-06 1.5E-10 64.1 1.5 102 49-156 293-412 (490)
36 KOG4579 Leucine-rich repeat (L 97.8 2.7E-06 5.8E-11 59.1 -1.2 83 58-156 53-136 (177)
37 KOG4658 Apoptotic ATPase [Sign 97.7 1E-05 2.2E-10 71.9 0.9 96 59-168 546-649 (889)
38 COG4886 Leucine-rich repeat (L 97.7 1.5E-05 3.1E-10 64.7 1.2 79 59-153 141-219 (394)
39 KOG0532 Leucine-rich repeat (L 97.6 4.5E-06 9.7E-11 69.7 -3.1 48 104-153 220-270 (722)
40 KOG1859 Leucine-rich repeat pr 97.6 3.2E-06 7E-11 72.4 -4.2 47 121-169 234-287 (1096)
41 KOG0531 Protein phosphatase 1, 97.5 6.4E-05 1.4E-09 61.6 2.1 80 59-156 96-175 (414)
42 KOG1859 Leucine-rich repeat pr 97.4 1.1E-05 2.4E-10 69.3 -2.5 41 115-155 250-291 (1096)
43 KOG4579 Leucine-rich repeat (L 97.4 8.2E-06 1.8E-10 56.8 -3.6 88 54-156 23-113 (177)
44 KOG4658 Apoptotic ATPase [Sign 97.3 9.8E-05 2.1E-09 65.8 1.6 83 58-154 571-653 (889)
45 KOG1644 U2-associated snRNP A' 97.2 0.00047 1E-08 50.9 4.1 93 59-168 43-147 (233)
46 PF00560 LRR_1: Leucine Rich R 97.1 0.00023 5E-09 33.5 0.8 21 120-141 1-21 (22)
47 KOG3207 Beta-tubulin folding c 96.9 0.00011 2.3E-09 59.8 -1.8 100 59-169 147-254 (505)
48 KOG0531 Protein phosphatase 1, 96.8 0.00079 1.7E-08 55.2 2.6 92 60-168 74-169 (414)
49 KOG3207 Beta-tubulin folding c 96.8 0.00022 4.8E-09 58.0 -1.1 111 57-168 171-308 (505)
50 KOG2739 Leucine-rich acidic nu 96.7 0.00084 1.8E-08 51.1 1.9 94 60-168 45-150 (260)
51 KOG2739 Leucine-rich acidic nu 96.7 0.001 2.2E-08 50.7 1.9 63 80-156 40-104 (260)
52 KOG1644 U2-associated snRNP A' 96.6 0.0032 7E-08 46.6 4.0 73 83-169 42-121 (233)
53 KOG3665 ZYG-1-like serine/thre 96.4 0.0012 2.6E-08 57.6 1.0 37 59-96 149-186 (699)
54 KOG0473 Leucine-rich repeat pr 96.3 7.5E-05 1.6E-09 56.4 -5.8 83 58-156 42-124 (326)
55 KOG2982 Uncharacterized conser 96.1 0.0012 2.6E-08 51.7 -0.5 85 59-156 72-159 (418)
56 KOG1909 Ran GTPase-activating 95.8 0.0019 4.2E-08 51.3 -0.5 109 59-168 93-248 (382)
57 PF13504 LRR_7: Leucine rich r 95.4 0.0092 2E-07 26.1 1.1 13 120-132 2-14 (17)
58 KOG2123 Uncharacterized conser 94.9 0.00078 1.7E-08 52.2 -5.2 77 59-149 42-123 (388)
59 smart00369 LRR_TYP Leucine-ric 94.7 0.034 7.3E-07 26.8 2.1 20 118-138 1-20 (26)
60 smart00370 LRR Leucine-rich re 94.7 0.034 7.3E-07 26.8 2.1 20 118-138 1-20 (26)
61 PRK15386 type III secretion pr 94.6 0.091 2E-06 43.2 5.7 10 84-93 95-104 (426)
62 PRK15386 type III secretion pr 94.2 0.08 1.7E-06 43.5 4.5 13 59-71 53-65 (426)
63 KOG3665 ZYG-1-like serine/thre 93.6 0.038 8.3E-07 48.4 1.8 62 59-132 123-186 (699)
64 COG5238 RNA1 Ran GTPase-activa 92.7 0.047 1E-06 42.5 0.8 96 59-156 31-133 (388)
65 KOG1909 Ran GTPase-activating 91.7 0.07 1.5E-06 42.6 0.8 42 115-156 237-283 (382)
66 PF13516 LRR_6: Leucine Rich r 91.1 0.077 1.7E-06 25.0 0.3 14 143-156 2-15 (24)
67 KOG2982 Uncharacterized conser 90.2 0.11 2.4E-06 41.0 0.6 72 49-132 86-159 (418)
68 KOG0473 Leucine-rich repeat pr 90.2 0.0073 1.6E-07 45.9 -5.7 69 74-156 33-101 (326)
69 COG5238 RNA1 Ran GTPase-activa 89.7 0.3 6.6E-06 38.2 2.6 37 59-96 93-133 (388)
70 smart00364 LRR_BAC Leucine-ric 88.6 0.29 6.4E-06 23.8 1.2 18 119-137 2-19 (26)
71 KOG2123 Uncharacterized conser 86.6 0.15 3.3E-06 39.9 -0.7 80 59-156 20-101 (388)
72 KOG2120 SCF ubiquitin ligase, 86.6 0.053 1.2E-06 42.8 -3.2 110 59-168 235-370 (419)
73 KOG2120 SCF ubiquitin ligase, 85.0 0.061 1.3E-06 42.4 -3.6 14 84-97 186-199 (419)
74 smart00365 LRR_SD22 Leucine-ri 83.3 1 2.2E-05 21.9 1.6 14 119-132 2-15 (26)
75 PF13306 LRR_5: Leucine rich r 82.6 4.8 0.0001 26.6 5.4 33 59-93 13-45 (129)
76 smart00368 LRR_RI Leucine rich 80.6 1.3 2.9E-05 21.6 1.5 13 120-132 3-15 (28)
77 PF13306 LRR_5: Leucine rich r 70.2 12 0.00025 24.7 4.5 76 59-152 36-112 (129)
78 KOG3864 Uncharacterized conser 62.8 1.4 3E-05 32.9 -1.3 82 59-152 102-185 (221)
79 KOG3763 mRNA export factor TAP 50.5 8.4 0.00018 33.0 1.2 40 117-156 242-283 (585)
80 smart00367 LRR_CC Leucine-rich 36.0 25 0.00055 16.4 1.2 11 119-129 2-12 (26)
81 TIGR00864 PCC polycystin catio 25.3 47 0.001 34.2 1.9 32 64-96 1-32 (2740)
82 PF05725 FNIP: FNIP Repeat; I 24.4 41 0.00089 18.0 0.9 11 157-167 30-40 (44)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.85 E-value=3.5e-21 Score=170.73 Aligned_cols=140 Identities=34% Similarity=0.563 Sum_probs=102.6
Q ss_pred ChHHHHHHHHHHHhcccCCCCCCCCCCCccCCCCCCCCCcccceeeCCCCCEEEEEcCCCccceecCCCCCCCCCCCcEE
Q 047948 9 SIEEGHALVKWKASLKVHSRSLLHSWFLSSVNVTKISPCAWSGIHCNHAGRVVGINLTSMSLNGTLLEFPFSSFPHLAYL 88 (171)
Q Consensus 9 ~~~~~~~l~~~~~~l~~~~~~~~~~W~~~~~~~~~~~~c~w~gv~c~~~~~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L 88 (171)
.+.|..||++||+.+.+ +...+.+|+ ...++|.|.||+|+..++|+.|+++++.+++.++. .+..++.|+.|
T Consensus 27 ~~~~~~~l~~~~~~~~~-~~~~~~~w~------~~~~~c~w~gv~c~~~~~v~~L~L~~~~i~~~~~~-~~~~l~~L~~L 98 (968)
T PLN00113 27 HAEELELLLSFKSSIND-PLKYLSNWN------SSADVCLWQGITCNNSSRVVSIDLSGKNISGKISS-AIFRLPYIQTI 98 (968)
T ss_pred CHHHHHHHHHHHHhCCC-CcccCCCCC------CCCCCCcCcceecCCCCcEEEEEecCCCccccCCh-HHhCCCCCCEE
Confidence 55799999999999965 666678997 56789999999999777999999999988887777 77778888888
Q ss_pred EeecCcccccccccc-----------------------------------cccccccCCccccCCcCCCEEecccCcccc
Q 047948 89 VLYNNELFYIILPQI-----------------------------------TNKLSGQIPSEIGLLTHLTVLHISRNQLNG 133 (171)
Q Consensus 89 ~l~~n~l~g~~p~~~-----------------------------------~n~l~g~~p~~~~~l~~L~~L~ls~N~l~g 133 (171)
++++|.+.|.+|..+ .|.+.+.+|..++.+++|++|++++|.+.+
T Consensus 99 ~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~ 178 (968)
T PLN00113 99 NLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVG 178 (968)
T ss_pred ECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccc
Confidence 888877777666532 344444555555666666666666666666
Q ss_pred cCChhhhCccccCceeccccccc
Q 047948 134 SIPQEVGQLTFLNHLILDLIFLI 156 (171)
Q Consensus 134 ~~P~~~~~l~~L~~L~Ls~N~l~ 156 (171)
.+|..++++++|++|++++|.+.
T Consensus 179 ~~p~~~~~l~~L~~L~L~~n~l~ 201 (968)
T PLN00113 179 KIPNSLTNLTSLEFLTLASNQLV 201 (968)
T ss_pred cCChhhhhCcCCCeeeccCCCCc
Confidence 66666666666666666666554
No 2
>PLN03150 hypothetical protein; Provisional
Probab=99.75 E-value=5.4e-18 Score=144.27 Aligned_cols=135 Identities=35% Similarity=0.482 Sum_probs=109.3
Q ss_pred CCCChHHHHHHHHHHHhcccCCCCCCCCCCCccCCCCCCCCC-----cccceeeCCC-----CCEEEEEcCCCccceecC
Q 047948 6 SSNSIEEGHALVKWKASLKVHSRSLLHSWFLSSVNVTKISPC-----AWSGIHCNHA-----GRVVGINLTSMSLNGTLL 75 (171)
Q Consensus 6 ~~~~~~~~~~l~~~~~~l~~~~~~~~~~W~~~~~~~~~~~~c-----~w~gv~c~~~-----~~v~~L~l~~~~l~~~~p 75 (171)
.+....|..||+.+|..+.. +. ..+|. .++| .|.||.|... ..|+.|+|+++.+.|.+|
T Consensus 367 ~~t~~~~~~aL~~~k~~~~~-~~--~~~W~--------g~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip 435 (623)
T PLN03150 367 SKTLLEEVSALQTLKSSLGL-PL--RFGWN--------GDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIP 435 (623)
T ss_pred cccCchHHHHHHHHHHhcCC-cc--cCCCC--------CCCCCCcccccccceeeccCCCCceEEEEEECCCCCccccCC
Confidence 34566799999999999864 32 24787 2455 6999999521 248999999999999999
Q ss_pred CCCCCCCCCCcEEEeecCcccccccccccccccccCCccccCCcCCCEEecccCcccccCChhhhCccccCceecccccc
Q 047948 76 EFPFSSFPHLAYLVLYNNELFYIILPQITNKLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQEVGQLTFLNHLILDLIFL 155 (171)
Q Consensus 76 ~~~l~~L~~L~~L~l~~n~l~g~~p~~~~n~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l 155 (171)
. ++..|+.|+.|++++|.+.| .+|..++.+++|+.|+|++|+++|.+|+.++++++|++|+|++|++
T Consensus 436 ~-~i~~L~~L~~L~Ls~N~l~g------------~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l 502 (623)
T PLN03150 436 N-DISKLRHLQSINLSGNSIRG------------NIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSL 502 (623)
T ss_pred H-HHhCCCCCCEEECCCCcccC------------cCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcc
Confidence 9 99999999999999998875 4556778888888888888888888888888888888888888888
Q ss_pred ccccchhhh
Q 047948 156 IFWMVQSLV 164 (171)
Q Consensus 156 ~~~~~~~L~ 164 (171)
++.++..|.
T Consensus 503 ~g~iP~~l~ 511 (623)
T PLN03150 503 SGRVPAALG 511 (623)
T ss_pred cccCChHHh
Confidence 877766554
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.35 E-value=1e-12 Score=117.02 Aligned_cols=95 Identities=37% Similarity=0.494 Sum_probs=41.8
Q ss_pred EEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc------------cccccccCCccccCCcCCCEEecc
Q 047948 60 VVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI------------TNKLSGQIPSEIGLLTHLTVLHIS 127 (171)
Q Consensus 60 v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~------------~n~l~g~~p~~~~~l~~L~~L~ls 127 (171)
+++|++++|.+.+.+|. .+..+++|++|++++|.+.+.+|..+ .|.+.+.+|..++.+++|+.|+++
T Consensus 142 L~~L~Ls~n~~~~~~p~-~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~ 220 (968)
T PLN00113 142 LETLDLSNNMLSGEIPN-DIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLG 220 (968)
T ss_pred CCEEECcCCcccccCCh-HHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECc
Confidence 44444444444444444 44445555555555555444444333 333444444444444444444444
Q ss_pred cCcccccCChhhhCccccCceecccccc
Q 047948 128 RNQLNGSIPQEVGQLTFLNHLILDLIFL 155 (171)
Q Consensus 128 ~N~l~g~~P~~~~~l~~L~~L~Ls~N~l 155 (171)
+|++++.+|..++++++|++|++++|.+
T Consensus 221 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l 248 (968)
T PLN00113 221 YNNLSGEIPYEIGGLTSLNHLDLVYNNL 248 (968)
T ss_pred CCccCCcCChhHhcCCCCCEEECcCcee
Confidence 4444444444444444444444444433
No 4
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.12 E-value=5.4e-12 Score=90.34 Aligned_cols=83 Identities=25% Similarity=0.395 Sum_probs=57.7
Q ss_pred CCEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccccccccccCCccccCCcCCCEEecccCcccccCCh
Q 047948 58 GRVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQITNKLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQ 137 (171)
Q Consensus 58 ~~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~~n~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~ 137 (171)
.+++++.|+.|.++ .+|+ .+..|.+|+.|++.+|++. .+|..++.++.|++|+++-|++. .+|.
T Consensus 33 s~ITrLtLSHNKl~-~vpp-nia~l~nlevln~~nnqie-------------~lp~~issl~klr~lnvgmnrl~-~lpr 96 (264)
T KOG0617|consen 33 SNITRLTLSHNKLT-VVPP-NIAELKNLEVLNLSNNQIE-------------ELPTSISSLPKLRILNVGMNRLN-ILPR 96 (264)
T ss_pred hhhhhhhcccCcee-ecCC-cHHHhhhhhhhhcccchhh-------------hcChhhhhchhhhheecchhhhh-cCcc
Confidence 36888888999887 6666 7888999999999988886 45555555556666666655555 5555
Q ss_pred hhhCccccCceeccccccc
Q 047948 138 EVGQLTFLNHLILDLIFLI 156 (171)
Q Consensus 138 ~~~~l~~L~~L~Ls~N~l~ 156 (171)
.|+.++.|++|||++|++.
T Consensus 97 gfgs~p~levldltynnl~ 115 (264)
T KOG0617|consen 97 GFGSFPALEVLDLTYNNLN 115 (264)
T ss_pred ccCCCchhhhhhccccccc
Confidence 5665555666655555554
No 5
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.03 E-value=2.4e-10 Score=90.77 Aligned_cols=51 Identities=22% Similarity=0.370 Sum_probs=44.0
Q ss_pred eeeCCCC----------CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc
Q 047948 52 IHCNHAG----------RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI 103 (171)
Q Consensus 52 v~c~~~~----------~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~ 103 (171)
|.|..+| ..+.|+|+.|+++ .+|+.+|..|+.|++|||++|.++.+-|..|
T Consensus 51 VdCr~~GL~eVP~~LP~~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF 111 (498)
T KOG4237|consen 51 VDCRGKGLTEVPANLPPETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAF 111 (498)
T ss_pred EEccCCCcccCcccCCCcceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhh
Confidence 6676544 6799999999999 6776699999999999999999998888777
No 6
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.92 E-value=2.1e-09 Score=59.97 Aligned_cols=41 Identities=34% Similarity=0.807 Sum_probs=29.8
Q ss_pred hHHHHHHHHHHHhcccCCCCCCCCCCCccCCCC-CCCCCcccceeeC
Q 047948 10 IEEGHALVKWKASLKVHSRSLLHSWFLSSVNVT-KISPCAWSGIHCN 55 (171)
Q Consensus 10 ~~~~~~l~~~~~~l~~~~~~~~~~W~~~~~~~~-~~~~c~w~gv~c~ 55 (171)
+.|++||++||..+..++...+.+|+ .. ..+||.|.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~W~-----~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSSWN-----PSSDSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT-------TT--S-CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccCcccccCC-----CcCCCCCeeeccEEeC
Confidence 57999999999999864667899998 23 3799999999995
No 7
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.92 E-value=1e-09 Score=65.76 Aligned_cols=60 Identities=35% Similarity=0.410 Sum_probs=45.9
Q ss_pred CCCcEEEeecCcccccccccccccccccCC-ccccCCcCCCEEecccCcccccCChhhhCccccCceecccccc
Q 047948 83 PHLAYLVLYNNELFYIILPQITNKLSGQIP-SEIGLLTHLTVLHISRNQLNGSIPQEVGQLTFLNHLILDLIFL 155 (171)
Q Consensus 83 ~~L~~L~l~~n~l~g~~p~~~~n~l~g~~p-~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l 155 (171)
++|+.|++++|+++ .+| ..|..+++|++|++++|.++...|..|.++++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~-------------~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLT-------------EIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTES-------------EECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCC-------------ccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 35778888888776 233 4667788888888888888866666788888888888888875
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.90 E-value=1.4e-10 Score=96.14 Aligned_cols=44 Identities=18% Similarity=0.110 Sum_probs=27.4
Q ss_pred CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc
Q 047948 59 RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI 103 (171)
Q Consensus 59 ~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~ 103 (171)
.+..|+|+.|+++..-.. .+.+|+.|+.|++++|.+...-+..+
T Consensus 270 kme~l~L~~N~l~~vn~g-~lfgLt~L~~L~lS~NaI~rih~d~W 313 (873)
T KOG4194|consen 270 KMEHLNLETNRLQAVNEG-WLFGLTSLEQLDLSYNAIQRIHIDSW 313 (873)
T ss_pred ccceeecccchhhhhhcc-cccccchhhhhccchhhhheeecchh
Confidence 466677777776644334 66677777777777777665444433
No 9
>PLN03150 hypothetical protein; Provisional
Probab=98.90 E-value=1.7e-09 Score=92.65 Aligned_cols=86 Identities=26% Similarity=0.359 Sum_probs=76.3
Q ss_pred CCEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccccccccccCCccccCCcCCCEEecccCcccccCCh
Q 047948 58 GRVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQITNKLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQ 137 (171)
Q Consensus 58 ~~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~~n~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~ 137 (171)
.+++.|+|++|.+.|.+|. .+..++.|+.|++++|.++| .+|..++.+++|+.|++++|+++|.+|.
T Consensus 442 ~~L~~L~Ls~N~l~g~iP~-~~~~l~~L~~LdLs~N~lsg------------~iP~~l~~L~~L~~L~Ls~N~l~g~iP~ 508 (623)
T PLN03150 442 RHLQSINLSGNSIRGNIPP-SLGSITSLEVLDLSYNSFNG------------SIPESLGQLTSLRILNLNGNSLSGRVPA 508 (623)
T ss_pred CCCCEEECCCCcccCcCCh-HHhCCCCCCEEECCCCCCCC------------CCchHHhcCCCCCEEECcCCcccccCCh
Confidence 3789999999999999998 89999999999999998875 5668899999999999999999999999
Q ss_pred hhhCc-cccCceeccccccc
Q 047948 138 EVGQL-TFLNHLILDLIFLI 156 (171)
Q Consensus 138 ~~~~l-~~L~~L~Ls~N~l~ 156 (171)
.++.+ .++..+++.+|...
T Consensus 509 ~l~~~~~~~~~l~~~~N~~l 528 (623)
T PLN03150 509 ALGGRLLHRASFNFTDNAGL 528 (623)
T ss_pred HHhhccccCceEEecCCccc
Confidence 98764 46778889888754
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.90 E-value=6e-10 Score=88.90 Aligned_cols=94 Identities=29% Similarity=0.359 Sum_probs=81.9
Q ss_pred CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc------------cccccccCCccccCCcCCCEEec
Q 047948 59 RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI------------TNKLSGQIPSEIGLLTHLTVLHI 126 (171)
Q Consensus 59 ~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~------------~n~l~g~~p~~~~~l~~L~~L~l 126 (171)
+++-++|++|-+. .+|. +++.+..|+.|+++.|+|. .+|..+ .|++...-|+.+.+|.+|..||+
T Consensus 436 kLt~L~L~NN~Ln-~LP~-e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL 512 (565)
T KOG0472|consen 436 KLTFLDLSNNLLN-DLPE-EMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDL 512 (565)
T ss_pred cceeeecccchhh-hcch-hhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceecc
Confidence 6788899988877 8888 8999999999999999886 556554 46766555556999999999999
Q ss_pred ccCcccccCChhhhCccccCceeccccccc
Q 047948 127 SRNQLNGSIPQEVGQLTFLNHLILDLIFLI 156 (171)
Q Consensus 127 s~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~ 156 (171)
.+|.+. .+|+.+++|.+|++|++.+|+|+
T Consensus 513 ~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 513 QNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred CCCchh-hCChhhccccceeEEEecCCccC
Confidence 999999 99999999999999999999998
No 11
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.87 E-value=1.6e-09 Score=78.53 Aligned_cols=92 Identities=23% Similarity=0.317 Sum_probs=31.7
Q ss_pred CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccccccccccCCccc-cCCcCCCEEecccCcccccCC-
Q 047948 59 RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQITNKLSGQIPSEI-GLLTHLTVLHISRNQLNGSIP- 136 (171)
Q Consensus 59 ~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~~n~l~g~~p~~~-~~l~~L~~L~ls~N~l~g~~P- 136 (171)
+++.|++++|.++ .+.. +..|+.|+.|++++|.++ .+...+ ..+++|+.|++++|++.. +-
T Consensus 43 ~L~~L~Ls~N~I~-~l~~--l~~L~~L~~L~L~~N~I~-------------~i~~~l~~~lp~L~~L~L~~N~I~~-l~~ 105 (175)
T PF14580_consen 43 KLEVLDLSNNQIT-KLEG--LPGLPRLKTLDLSNNRIS-------------SISEGLDKNLPNLQELYLSNNKISD-LNE 105 (175)
T ss_dssp T--EEE-TTS--S---TT------TT--EEE--SS----------------S-CHHHHHH-TT--EEE-TTS---S-CCC
T ss_pred CCCEEECCCCCCc-cccC--ccChhhhhhcccCCCCCC-------------ccccchHHhCCcCCEEECcCCcCCC-hHH
Confidence 4566666666655 2332 455566666666666654 222222 245667777777776652 21
Q ss_pred -hhhhCccccCceeccccccc---------cccchhhhccc
Q 047948 137 -QEVGQLTFLNHLILDLIFLI---------FWMVQSLVLLA 167 (171)
Q Consensus 137 -~~~~~l~~L~~L~Ls~N~l~---------~~~~~~L~~L~ 167 (171)
..+..+++|++|++.+|+++ ...+++|+.||
T Consensus 106 l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD 146 (175)
T PF14580_consen 106 LEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLD 146 (175)
T ss_dssp CGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEET
T ss_pred hHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeC
Confidence 23455666777777777665 34455555555
No 12
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.86 E-value=1.2e-09 Score=90.77 Aligned_cols=37 Identities=24% Similarity=0.381 Sum_probs=20.0
Q ss_pred CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCccc
Q 047948 59 RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELF 96 (171)
Q Consensus 59 ~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~ 96 (171)
.+..+.|+.|+++ .+|...|.+|+.|+.|+|..|.+.
T Consensus 198 sL~tlkLsrNrit-tLp~r~Fk~L~~L~~LdLnrN~ir 234 (873)
T KOG4194|consen 198 SLLTLKLSRNRIT-TLPQRSFKRLPKLESLDLNRNRIR 234 (873)
T ss_pred hheeeecccCccc-ccCHHHhhhcchhhhhhcccccee
Confidence 4555555555555 334325555666666666665554
No 13
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.82 E-value=3e-10 Score=81.48 Aligned_cols=93 Identities=29% Similarity=0.366 Sum_probs=55.9
Q ss_pred CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc------------ccccc-ccCCccccCCcCCCEEe
Q 047948 59 RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI------------TNKLS-GQIPSEIGLLTHLTVLH 125 (171)
Q Consensus 59 ~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~------------~n~l~-g~~p~~~~~l~~L~~L~ 125 (171)
++..+++.+|++. .+|. ++..++.|+.|+++-|++. ..|..| +|++. ..+|..|..|+-|+.|.
T Consensus 57 nlevln~~nnqie-~lp~-~issl~klr~lnvgmnrl~-~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlraly 133 (264)
T KOG0617|consen 57 NLEVLNLSNNQIE-ELPT-SISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALY 133 (264)
T ss_pred hhhhhhcccchhh-hcCh-hhhhchhhhheecchhhhh-cCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHH
Confidence 6788889999988 7777 8999999999999988886 223222 22222 22344444444444444
Q ss_pred cccCcccccCChhhhCccccCceecccccc
Q 047948 126 ISRNQLNGSIPQEVGQLTFLNHLILDLIFL 155 (171)
Q Consensus 126 ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l 155 (171)
++.|.|. .+|+.++++++|+.|.+.+|.+
T Consensus 134 l~dndfe-~lp~dvg~lt~lqil~lrdndl 162 (264)
T KOG0617|consen 134 LGDNDFE-ILPPDVGKLTNLQILSLRDNDL 162 (264)
T ss_pred hcCCCcc-cCChhhhhhcceeEEeeccCch
Confidence 4444444 4555555555555555555544
No 14
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.77 E-value=2.7e-09 Score=85.20 Aligned_cols=52 Identities=35% Similarity=0.487 Sum_probs=45.0
Q ss_pred cccccccCCccccCCcCCCEEecccCcccccCChhhhCccccCceeccccccc
Q 047948 104 TNKLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQEVGQLTFLNHLILDLIFLI 156 (171)
Q Consensus 104 ~n~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~ 156 (171)
.|+.-+.+|..+..+++|..|++++|-+. .+|.+++.+..|+.|+++.|+|.
T Consensus 420 snn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr 471 (565)
T KOG0472|consen 420 SNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR 471 (565)
T ss_pred hcCccccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc
Confidence 56666678888889999999999998888 89999999999999999999886
No 15
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.74 E-value=1.2e-08 Score=73.89 Aligned_cols=94 Identities=22% Similarity=0.291 Sum_probs=35.2
Q ss_pred CEEEEEcCCCccceecCCCCCC-CCCCCcEEEeecCcccccccccccccccccCCccccCCcCCCEEecccCcccccCCh
Q 047948 59 RVVGINLTSMSLNGTLLEFPFS-SFPHLAYLVLYNNELFYIILPQITNKLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQ 137 (171)
Q Consensus 59 ~v~~L~l~~~~l~~~~p~~~l~-~L~~L~~L~l~~n~l~g~~p~~~~n~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~ 137 (171)
+++.|+|++|.++ .+. .+. .+..|+.|++++|.++. + ..+..++.|+.|++++|+++ .+.+
T Consensus 20 ~~~~L~L~~n~I~-~Ie--~L~~~l~~L~~L~Ls~N~I~~-------------l-~~l~~L~~L~~L~L~~N~I~-~i~~ 81 (175)
T PF14580_consen 20 KLRELNLRGNQIS-TIE--NLGATLDKLEVLDLSNNQITK-------------L-EGLPGLPRLKTLDLSNNRIS-SISE 81 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS--S----------------TT----TT--EEE--SS----S-CH
T ss_pred ccccccccccccc-ccc--chhhhhcCCCEEECCCCCCcc-------------c-cCccChhhhhhcccCCCCCC-cccc
Confidence 5789999999988 343 355 57899999999999972 2 24667899999999999999 6766
Q ss_pred hh-hCccccCceeccccccc-------cccchhhhcccccc
Q 047948 138 EV-GQLTFLNHLILDLIFLI-------FWMVQSLVLLAIWP 170 (171)
Q Consensus 138 ~~-~~l~~L~~L~Ls~N~l~-------~~~~~~L~~L~l~~ 170 (171)
.+ ..+++|++|++++|++. ...+++|+.|++..
T Consensus 82 ~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~ 122 (175)
T PF14580_consen 82 GLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEG 122 (175)
T ss_dssp HHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT
T ss_pred chHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccC
Confidence 55 46899999999999997 34567788887753
No 16
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.68 E-value=2.6e-09 Score=89.70 Aligned_cols=107 Identities=24% Similarity=0.296 Sum_probs=81.3
Q ss_pred CEEEEEcCCCccce-ecCCCCCCCCCCCcEEEeecCcccccccccc------------cccccccCCc-cccCCcCCCEE
Q 047948 59 RVVGINLTSMSLNG-TLLEFPFSSFPHLAYLVLYNNELFYIILPQI------------TNKLSGQIPS-EIGLLTHLTVL 124 (171)
Q Consensus 59 ~v~~L~l~~~~l~~-~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~------------~n~l~g~~p~-~~~~l~~L~~L 124 (171)
+++++++..|++.. .+|. .+..|..|+.||||+|++. ..|..+ +|++. .||. -+.+++.|-.|
T Consensus 79 ~LRsv~~R~N~LKnsGiP~-diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfL 155 (1255)
T KOG0444|consen 79 RLRSVIVRDNNLKNSGIPT-DIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFL 155 (1255)
T ss_pred hhHHHhhhccccccCCCCc-hhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhh
Confidence 45666777777653 3666 7888888888888888886 566655 56655 4664 46789999999
Q ss_pred ecccCcccccCChhhhCccccCceeccccccc------cccchhhhccccc
Q 047948 125 HISRNQLNGSIPQEVGQLTFLNHLILDLIFLI------FWMVQSLVLLAIW 169 (171)
Q Consensus 125 ~ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~------~~~~~~L~~L~l~ 169 (171)
|||.|++. .+|+.+..+..|+.|+|++|.+. ...+++|.+|.+.
T Consensus 156 DLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms 205 (1255)
T KOG0444|consen 156 DLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMS 205 (1255)
T ss_pred ccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcc
Confidence 99999999 99999999999999999999876 4445566655554
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.67 E-value=1.5e-07 Score=81.94 Aligned_cols=24 Identities=17% Similarity=-0.013 Sum_probs=18.5
Q ss_pred ccccCCCChHHHHHHHHHHHhccc
Q 047948 2 SLDVSSNSIEEGHALVKWKASLKV 25 (171)
Q Consensus 2 ~~~~~~~~~~~~~~l~~~~~~l~~ 25 (171)
|+.......++...+.++.+.+..
T Consensus 54 ~~~~~~~~~~~~~~~~~~~~~l~~ 77 (754)
T PRK15370 54 CHPPETASPEEIKSKFECLRMLAF 77 (754)
T ss_pred hCCCCCCCHHHHHHHHHHHHHhcC
Confidence 455667778888888888888865
No 18
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.66 E-value=2.1e-09 Score=92.87 Aligned_cols=92 Identities=25% Similarity=0.278 Sum_probs=66.6
Q ss_pred CCEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc------------cccccccCCccccCCcCCCEEe
Q 047948 58 GRVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI------------TNKLSGQIPSEIGLLTHLTVLH 125 (171)
Q Consensus 58 ~~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~------------~n~l~g~~p~~~~~l~~L~~L~ 125 (171)
.+++.|+|++|++. .+|+..+.+|..|+.|++|+|+++ .+|..+ +|++. .+| ++..+++|+.+|
T Consensus 383 ~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lD 458 (1081)
T KOG0618|consen 383 KHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLD 458 (1081)
T ss_pred cceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEe
Confidence 37899999999887 677657888999999999999988 455554 56665 344 677778888888
Q ss_pred cccCccccc-CChhhhCccccCceeccccc
Q 047948 126 ISRNQLNGS-IPQEVGQLTFLNHLILDLIF 154 (171)
Q Consensus 126 ls~N~l~g~-~P~~~~~l~~L~~L~Ls~N~ 154 (171)
+|.|+++.. +|.. ..-++|++||+++|.
T Consensus 459 lS~N~L~~~~l~~~-~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 459 LSCNNLSEVTLPEA-LPSPNLKYLDLSGNT 487 (1081)
T ss_pred cccchhhhhhhhhh-CCCcccceeeccCCc
Confidence 888887743 3332 223678888888775
No 19
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.63 E-value=4.9e-08 Score=58.38 Aligned_cols=60 Identities=32% Similarity=0.439 Sum_probs=50.9
Q ss_pred CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccccccccccCCccccCCcCCCEEecccCcc
Q 047948 59 RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQITNKLSGQIPSEIGLLTHLTVLHISRNQL 131 (171)
Q Consensus 59 ~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~~n~l~g~~p~~~~~l~~L~~L~ls~N~l 131 (171)
+++.|++++|+++ .+|...|..++.|++|++++|.+... .|..|..+++|++|++++|++
T Consensus 2 ~L~~L~l~~n~l~-~i~~~~f~~l~~L~~L~l~~N~l~~i------------~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLT-EIPPDSFSNLPNLETLDLSNNNLTSI------------PPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTES-EECTTTTTTGTTESEEEETSSSESEE------------ETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCC-ccCHHHHcCCCCCCEeEccCCccCcc------------CHHHHcCCCCCCEEeCcCCcC
Confidence 5889999999999 55543899999999999999998732 235789999999999999975
No 20
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.62 E-value=7.6e-09 Score=86.97 Aligned_cols=107 Identities=26% Similarity=0.311 Sum_probs=75.9
Q ss_pred CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc-----------------------------------
Q 047948 59 RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI----------------------------------- 103 (171)
Q Consensus 59 ~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~----------------------------------- 103 (171)
+...|+|++|++. .+|..-|.+|+-|-.||||+|++. .+|+.+
T Consensus 127 n~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhm 204 (1255)
T KOG0444|consen 127 NSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHM 204 (1255)
T ss_pred CcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhc
Confidence 5566666766665 555434566666777777777766 334333
Q ss_pred --cccccccCCccccCCcCCCEEecccCcccccCChhhhCccccCceeccccccc-----cccchhhhcccc
Q 047948 104 --TNKLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQEVGQLTFLNHLILDLIFLI-----FWMVQSLVLLAI 168 (171)
Q Consensus 104 --~n~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~-----~~~~~~L~~L~l 168 (171)
.++--..+|..+-.+.+|+.+|+|.|++. .+|+.+.++++|+.|+||+|+++ ...-..|+.|++
T Consensus 205 s~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNl 275 (1255)
T KOG0444|consen 205 SNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNL 275 (1255)
T ss_pred ccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhcc
Confidence 22223357888888899999999999999 99999999999999999999988 233345666665
No 21
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.40 E-value=4.7e-07 Score=78.93 Aligned_cols=98 Identities=20% Similarity=0.333 Sum_probs=45.5
Q ss_pred EEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc----------cccccccCCccccCCcCCCEEecccC
Q 047948 60 VVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI----------TNKLSGQIPSEIGLLTHLTVLHISRN 129 (171)
Q Consensus 60 v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~----------~n~l~g~~p~~~~~l~~L~~L~ls~N 129 (171)
++.|++++|.++ .+|. .+. +.|+.|++++|+++. +|..+ .|++.. +|..+ .++|+.|++++|
T Consensus 264 L~~L~Ls~N~L~-~LP~-~l~--~sL~~L~Ls~N~Lt~-LP~~lp~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N 335 (754)
T PRK15370 264 LQSLDLFHNKIS-CLPE-NLP--EELRYLSVYDNSIRT-LPAHLPSGITHLNVQSNSLTA-LPETL--PPGLKTLEAGEN 335 (754)
T ss_pred CCEEECcCCccC-cccc-ccC--CCCcEEECCCCcccc-CcccchhhHHHHHhcCCcccc-CCccc--cccceeccccCC
Confidence 445555555554 3444 332 356667777766663 23221 444442 33222 134555555555
Q ss_pred cccccCChhhhCccccCceeccccccc---cccchhhhcccc
Q 047948 130 QLNGSIPQEVGQLTFLNHLILDLIFLI---FWMVQSLVLLAI 168 (171)
Q Consensus 130 ~l~g~~P~~~~~l~~L~~L~Ls~N~l~---~~~~~~L~~L~l 168 (171)
.++ .+|..+. ++|+.|++++|+|+ ..++++|+.|++
T Consensus 336 ~Lt-~LP~~l~--~sL~~L~Ls~N~L~~LP~~lp~~L~~LdL 374 (754)
T PRK15370 336 ALT-SLPASLP--PELQVLDVSKNQITVLPETLPPTITTLDV 374 (754)
T ss_pred ccc-cCChhhc--CcccEEECCCCCCCcCChhhcCCcCEEEC
Confidence 555 3444332 34555555555544 223344444444
No 22
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.39 E-value=2.2e-07 Score=51.94 Aligned_cols=37 Identities=30% Similarity=0.386 Sum_probs=25.3
Q ss_pred cCCCEEecccCcccccCChhhhCccccCceeccccccc
Q 047948 119 THLTVLHISRNQLNGSIPQEVGQLTFLNHLILDLIFLI 156 (171)
Q Consensus 119 ~~L~~L~ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~ 156 (171)
++|++|++++|+++ .+|+.+++|++|++|++++|+|+
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 35777777777777 66666777777777777777765
No 23
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.39 E-value=3.3e-07 Score=79.91 Aligned_cols=46 Identities=26% Similarity=0.210 Sum_probs=36.3
Q ss_pred cCCCEEecccCcccccCChhhhCccccCceeccccccccccchhhhc
Q 047948 119 THLTVLHISRNQLNGSIPQEVGQLTFLNHLILDLIFLIFWMVQSLVL 165 (171)
Q Consensus 119 ~~L~~L~ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~~~~~~~L~~ 165 (171)
..|+.|++++|+++ .+|..+.++++|+.|+|++|+|++..+.+|..
T Consensus 422 ~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~ 467 (788)
T PRK15387 422 SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALRE 467 (788)
T ss_pred hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHH
Confidence 35667777777777 78888888999999999999998777666643
No 24
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.39 E-value=5.1e-08 Score=84.59 Aligned_cols=94 Identities=27% Similarity=0.234 Sum_probs=71.8
Q ss_pred ecCCCCCCCCCCCcEEEeecCcccccccccc--------------------------------------cccccccCCcc
Q 047948 73 TLLEFPFSSFPHLAYLVLYNNELFYIILPQI--------------------------------------TNKLSGQIPSE 114 (171)
Q Consensus 73 ~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~--------------------------------------~n~l~g~~p~~ 114 (171)
.+|+ ....++.|+.|++..|++. .+|..+ .|.+....-+.
T Consensus 301 yip~-~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~ 378 (1081)
T KOG0618|consen 301 YIPP-FLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPV 378 (1081)
T ss_pred hCCC-cccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhh
Confidence 5666 5667899999999999886 444433 68887776667
Q ss_pred ccCCcCCCEEecccCcccccCChh-hhCccccCceeccccccc-----cccchhhhccccc
Q 047948 115 IGLLTHLTVLHISRNQLNGSIPQE-VGQLTFLNHLILDLIFLI-----FWMVQSLVLLAIW 169 (171)
Q Consensus 115 ~~~l~~L~~L~ls~N~l~g~~P~~-~~~l~~L~~L~Ls~N~l~-----~~~~~~L~~L~l~ 169 (171)
+..+.+|++|+|++|++. .+|+. +.++..|++|+||+|+++ ......|++|..+
T Consensus 379 l~~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ah 438 (1081)
T KOG0618|consen 379 LVNFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAH 438 (1081)
T ss_pred hccccceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhc
Confidence 888899999999999998 88875 668889999999999987 4444555555544
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.27 E-value=1.1e-07 Score=79.07 Aligned_cols=91 Identities=26% Similarity=0.377 Sum_probs=54.2
Q ss_pred CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc-----------------------------------
Q 047948 59 RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI----------------------------------- 103 (171)
Q Consensus 59 ~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~----------------------------------- 103 (171)
.++.++|+.|+++ .+|. .++.|+ |+.|-+++|+++ .+|..+
T Consensus 122 ~lt~l~ls~NqlS-~lp~-~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vr 197 (722)
T KOG0532|consen 122 ALTFLDLSSNQLS-HLPD-GLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVR 197 (722)
T ss_pred HHHHhhhccchhh-cCCh-hhhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHh
Confidence 4566666666665 4454 444443 555555555554 233332
Q ss_pred cccccccCCccccCCcCCCEEecccCcccccCChhhhCccccCceeccccccc
Q 047948 104 TNKLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQEVGQLTFLNHLILDLIFLI 156 (171)
Q Consensus 104 ~n~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~ 156 (171)
.|++. .+|.++. .-.|..||+|.|+++ .+|-.|.+|+.|++|.|.+|.++
T Consensus 198 Rn~l~-~lp~El~-~LpLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 198 RNHLE-DLPEELC-SLPLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred hhhhh-hCCHHHh-CCceeeeecccCcee-ecchhhhhhhhheeeeeccCCCC
Confidence 34443 3455555 334667777777777 77777777777777777777776
No 26
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.18 E-value=3.7e-07 Score=71.42 Aligned_cols=37 Identities=24% Similarity=0.173 Sum_probs=16.6
Q ss_pred CEEEEEcCCCccceecCCCCCCCCCC---CcEEEeecCccc
Q 047948 59 RVVGINLTSMSLNGTLLEFPFSSFPH---LAYLVLYNNELF 96 (171)
Q Consensus 59 ~v~~L~l~~~~l~~~~p~~~l~~L~~---L~~L~l~~n~l~ 96 (171)
+++.++++++.+.+..+. .+..+.. |++|++++|.+.
T Consensus 82 ~L~~L~l~~~~~~~~~~~-~~~~l~~~~~L~~L~ls~~~~~ 121 (319)
T cd00116 82 GLQELDLSDNALGPDGCG-VLESLLRSSSLQELKLNNNGLG 121 (319)
T ss_pred ceeEEEccCCCCChhHHH-HHHHHhccCcccEEEeeCCccc
Confidence 455555555555432222 2222222 555555555444
No 27
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.17 E-value=4.9e-07 Score=70.30 Aligned_cols=92 Identities=21% Similarity=0.231 Sum_probs=51.0
Q ss_pred EEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccccccccccCCccccCCcCCCEEecccCcccccCC---
Q 047948 60 VVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQITNKLSGQIPSEIGLLTHLTVLHISRNQLNGSIP--- 136 (171)
Q Consensus 60 v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~~n~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P--- 136 (171)
++.+||++|.++ .+.. ++.-++.++.|++++|.+.- + ..+..+++|+.||||+|.++ ++-
T Consensus 286 LtelDLS~N~I~-~iDE-SvKL~Pkir~L~lS~N~i~~-------------v-~nLa~L~~L~~LDLS~N~Ls-~~~Gwh 348 (490)
T KOG1259|consen 286 LTELDLSGNLIT-QIDE-SVKLAPKLRRLILSQNRIRT-------------V-QNLAELPQLQLLDLSGNLLA-ECVGWH 348 (490)
T ss_pred hhhccccccchh-hhhh-hhhhccceeEEeccccceee-------------e-hhhhhcccceEeecccchhH-hhhhhH
Confidence 455666666655 4444 45555566666666665541 1 23455556666666666554 222
Q ss_pred -------------------hhhhCccccCceeccccccc-------cccchhhhcccc
Q 047948 137 -------------------QEVGQLTFLNHLILDLIFLI-------FWMVQSLVLLAI 168 (171)
Q Consensus 137 -------------------~~~~~l~~L~~L~Ls~N~l~-------~~~~~~L~~L~l 168 (171)
..++++-+|.+||+.+|++. ...++.|+.+.+
T Consensus 349 ~KLGNIKtL~La~N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L 406 (490)
T KOG1259|consen 349 LKLGNIKTLKLAQNKIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRL 406 (490)
T ss_pred hhhcCEeeeehhhhhHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhh
Confidence 12344556777777777776 344566665554
No 28
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.13 E-value=4.8e-06 Score=72.79 Aligned_cols=13 Identities=31% Similarity=0.309 Sum_probs=6.2
Q ss_pred CCcEEEeecCccc
Q 047948 84 HLAYLVLYNNELF 96 (171)
Q Consensus 84 ~L~~L~l~~n~l~ 96 (171)
.|+.|++++|+++
T Consensus 343 ~Lq~LdLS~N~Ls 355 (788)
T PRK15387 343 GLQELSVSDNQLA 355 (788)
T ss_pred ccceEecCCCccC
Confidence 3444555555444
No 29
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.12 E-value=2.4e-06 Score=47.69 Aligned_cols=40 Identities=33% Similarity=0.521 Sum_probs=29.2
Q ss_pred CCCcEEEeecCcccccccccccccccccCCccccCCcCCCEEecccCcccccCC
Q 047948 83 PHLAYLVLYNNELFYIILPQITNKLSGQIPSEIGLLTHLTVLHISRNQLNGSIP 136 (171)
Q Consensus 83 ~~L~~L~l~~n~l~g~~p~~~~n~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P 136 (171)
++|++|++++|+++ .+|+.++.+++|+.|++++|+++ .+|
T Consensus 1 ~~L~~L~l~~N~i~-------------~l~~~l~~l~~L~~L~l~~N~i~-~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-------------DLPPELSNLPNLETLNLSNNPIS-DIS 40 (44)
T ss_dssp TT-SEEEETSSS-S-------------SHGGHGTTCTTSSEEEETSSCCS-BEG
T ss_pred CcceEEEccCCCCc-------------ccCchHhCCCCCCEEEecCCCCC-CCc
Confidence 36788888888886 45566888888888888888888 443
No 30
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.05 E-value=1.2e-05 Score=73.64 Aligned_cols=92 Identities=22% Similarity=0.212 Sum_probs=48.0
Q ss_pred CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc-----------cccccccCCccccCCcCCCEEecc
Q 047948 59 RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI-----------TNKLSGQIPSEIGLLTHLTVLHIS 127 (171)
Q Consensus 59 ~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~-----------~n~l~g~~p~~~~~l~~L~~L~ls 127 (171)
+++.|++.++.+. .++. .+..++.|+.|+++++...+.+|..- ++..-..+|..+..+++|+.|+++
T Consensus 612 ~L~~L~L~~s~l~-~L~~-~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~ 689 (1153)
T PLN03210 612 NLVKLQMQGSKLE-KLWD-GVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMS 689 (1153)
T ss_pred CCcEEECcCcccc-cccc-ccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCC
Confidence 4566666666655 3444 45666666666666654333333210 122223455555566666666666
Q ss_pred cCcccccCChhhhCccccCceecccc
Q 047948 128 RNQLNGSIPQEVGQLTFLNHLILDLI 153 (171)
Q Consensus 128 ~N~l~g~~P~~~~~l~~L~~L~Ls~N 153 (171)
+|..-+.+|..+ ++++|++|++++|
T Consensus 690 ~c~~L~~Lp~~i-~l~sL~~L~Lsgc 714 (1153)
T PLN03210 690 RCENLEILPTGI-NLKSLYRLNLSGC 714 (1153)
T ss_pred CCCCcCccCCcC-CCCCCCEEeCCCC
Confidence 544333555543 4555555555544
No 31
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.04 E-value=9.1e-07 Score=69.20 Aligned_cols=97 Identities=21% Similarity=0.182 Sum_probs=49.7
Q ss_pred CEEEEEcCCCcccee----cCCCCCCCCCCCcEEEeecCcccccc----cc------cc------cccccc----cCCcc
Q 047948 59 RVVGINLTSMSLNGT----LLEFPFSSFPHLAYLVLYNNELFYII----LP------QI------TNKLSG----QIPSE 114 (171)
Q Consensus 59 ~v~~L~l~~~~l~~~----~p~~~l~~L~~L~~L~l~~n~l~g~~----p~------~~------~n~l~g----~~p~~ 114 (171)
+++.+++++|.+++. +.. .+..++.|+.|++++|.+.+.. +. .+ .|.+.+ .++..
T Consensus 138 ~L~~L~L~~n~l~~~~~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~ 216 (319)
T cd00116 138 ALEKLVLGRNRLEGASCEALAK-ALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAET 216 (319)
T ss_pred CceEEEcCCCcCCchHHHHHHH-HHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHH
Confidence 677777777776632 222 3445566777777777766321 10 01 233321 12233
Q ss_pred ccCCcCCCEEecccCcccccCChhhhC-----ccccCceeccccccc
Q 047948 115 IGLLTHLTVLHISRNQLNGSIPQEVGQ-----LTFLNHLILDLIFLI 156 (171)
Q Consensus 115 ~~~l~~L~~L~ls~N~l~g~~P~~~~~-----l~~L~~L~Ls~N~l~ 156 (171)
+..+++|++|++++|.+++.....+.. .+.|++|++++|.++
T Consensus 217 ~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~ 263 (319)
T cd00116 217 LASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDIT 263 (319)
T ss_pred hcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCC
Confidence 445566666666666666422222211 245666666666653
No 32
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.02 E-value=1.1e-05 Score=73.81 Aligned_cols=93 Identities=16% Similarity=0.160 Sum_probs=68.0
Q ss_pred CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc-----------cccccccCCccccCCcCCCEEecc
Q 047948 59 RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI-----------TNKLSGQIPSEIGLLTHLTVLHIS 127 (171)
Q Consensus 59 ~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~-----------~n~l~g~~p~~~~~l~~L~~L~ls 127 (171)
.++.|++++|...+.+|. ++..++.|+.|++++|...+.+|..+ ++..-..+|. ...+|+.|+++
T Consensus 779 sL~~L~Ls~n~~l~~lP~-si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~---~~~nL~~L~Ls 854 (1153)
T PLN03210 779 SLTRLFLSDIPSLVELPS-SIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPD---ISTNISDLNLS 854 (1153)
T ss_pred cchheeCCCCCCccccCh-hhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccc---cccccCEeECC
Confidence 578888988887778888 89999999999999876555666543 1111112232 23578888888
Q ss_pred cCcccccCChhhhCccccCceeccc-cccc
Q 047948 128 RNQLNGSIPQEVGQLTFLNHLILDL-IFLI 156 (171)
Q Consensus 128 ~N~l~g~~P~~~~~l~~L~~L~Ls~-N~l~ 156 (171)
+|.++ .+|..+..+++|++|++++ |++.
T Consensus 855 ~n~i~-~iP~si~~l~~L~~L~L~~C~~L~ 883 (1153)
T PLN03210 855 RTGIE-EVPWWIEKFSNLSFLDMNGCNNLQ 883 (1153)
T ss_pred CCCCc-cChHHHhcCCCCCEEECCCCCCcC
Confidence 88888 7888888888999998877 4454
No 33
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.01 E-value=3.8e-06 Score=68.09 Aligned_cols=95 Identities=22% Similarity=0.274 Sum_probs=67.8
Q ss_pred CEEEEEcCCCccceecCCCCCCCCC-CCcEEEeecCcccccccccccccccccCCccccCCcCCCEEecccCcccccCCh
Q 047948 59 RVVGINLTSMSLNGTLLEFPFSSFP-HLAYLVLYNNELFYIILPQITNKLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQ 137 (171)
Q Consensus 59 ~v~~L~l~~~~l~~~~p~~~l~~L~-~L~~L~l~~n~l~g~~p~~~~n~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~ 137 (171)
.++.+++.++.++ .+++ ....+. +|+.|+++.|.+. .+|..+..++.|+.|+++.|+++ .+|.
T Consensus 117 ~l~~L~l~~n~i~-~i~~-~~~~~~~nL~~L~l~~N~i~-------------~l~~~~~~l~~L~~L~l~~N~l~-~l~~ 180 (394)
T COG4886 117 NLTSLDLDNNNIT-DIPP-LIGLLKSNLKELDLSDNKIE-------------SLPSPLRNLPNLKNLDLSFNDLS-DLPK 180 (394)
T ss_pred ceeEEecCCcccc-cCcc-ccccchhhcccccccccchh-------------hhhhhhhccccccccccCCchhh-hhhh
Confidence 5788888888877 5666 555564 8888888888876 44456677788888888888888 7777
Q ss_pred hhhCccccCceeccccccc---c--ccchhhhccccc
Q 047948 138 EVGQLTFLNHLILDLIFLI---F--WMVQSLVLLAIW 169 (171)
Q Consensus 138 ~~~~l~~L~~L~Ls~N~l~---~--~~~~~L~~L~l~ 169 (171)
..+.++.|+.|++++|+++ . ..+..|.++.+-
T Consensus 181 ~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~ 217 (394)
T COG4886 181 LLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLS 217 (394)
T ss_pred hhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhc
Confidence 6667777888888888777 1 234446666553
No 34
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=97.98 E-value=1.7e-06 Score=69.28 Aligned_cols=79 Identities=27% Similarity=0.177 Sum_probs=41.3
Q ss_pred CCCCCCCCcEEEeecCcccccccccc------------cccccccCCccccCCcCCCEEecccCcccccCChhhhCcccc
Q 047948 78 PFSSFPHLAYLVLYNNELFYIILPQI------------TNKLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQEVGQLTFL 145 (171)
Q Consensus 78 ~l~~L~~L~~L~l~~n~l~g~~p~~~------------~n~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L 145 (171)
.|..|++|+.|++++|+++++-+..| .|++...--..|.++..|+.|+|++|+++-.-|-+|..+.+|
T Consensus 269 cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l 348 (498)
T KOG4237|consen 269 CFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSL 348 (498)
T ss_pred HHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEeccccccccee
Confidence 36667777777777777765433222 222221111234455555555555555554555555555555
Q ss_pred Cceeccccccc
Q 047948 146 NHLILDLIFLI 156 (171)
Q Consensus 146 ~~L~Ls~N~l~ 156 (171)
..|+|-.|.+.
T Consensus 349 ~~l~l~~Np~~ 359 (498)
T KOG4237|consen 349 STLNLLSNPFN 359 (498)
T ss_pred eeeehccCccc
Confidence 55555555543
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.84 E-value=6.7e-06 Score=64.12 Aligned_cols=102 Identities=24% Similarity=0.226 Sum_probs=74.8
Q ss_pred ccceeeCCC-----CCEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc-----------cccccccCC
Q 047948 49 WSGIHCNHA-----GRVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI-----------TNKLSGQIP 112 (171)
Q Consensus 49 w~gv~c~~~-----~~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~-----------~n~l~g~~p 112 (171)
.+.++|... ..|+.|+++.|++. .+. .+..|.+|+.||+++|.++...-... .|.+...
T Consensus 293 ~N~I~~iDESvKL~Pkir~L~lS~N~i~-~v~--nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~iE~L-- 367 (490)
T KOG1259|consen 293 GNLITQIDESVKLAPKLRRLILSQNRIR-TVQ--NLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNKIETL-- 367 (490)
T ss_pred ccchhhhhhhhhhccceeEEecccccee-eeh--hhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhhhHhhh--
Confidence 344555432 37999999999987 332 47889999999999999874322111 3433321
Q ss_pred ccccCCcCCCEEecccCcccccCC--hhhhCccccCceeccccccc
Q 047948 113 SEIGLLTHLTVLHISRNQLNGSIP--QEVGQLTFLNHLILDLIFLI 156 (171)
Q Consensus 113 ~~~~~l~~L~~L~ls~N~l~g~~P--~~~~~l~~L~~L~Ls~N~l~ 156 (171)
..++++-+|..||+++|++. .+. ..+++++.|+++.|.+|.+.
T Consensus 368 SGL~KLYSLvnLDl~~N~Ie-~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 368 SGLRKLYSLVNLDLSSNQIE-ELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred hhhHhhhhheeccccccchh-hHHHhcccccccHHHHHhhcCCCcc
Confidence 34677889999999999998 333 35899999999999999997
No 36
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.79 E-value=2.7e-06 Score=59.12 Aligned_cols=83 Identities=25% Similarity=0.337 Sum_probs=67.8
Q ss_pred CCEEEEEcCCCccceecCCCCCC-CCCCCcEEEeecCcccccccccccccccccCCccccCCcCCCEEecccCcccccCC
Q 047948 58 GRVVGINLTSMSLNGTLLEFPFS-SFPHLAYLVLYNNELFYIILPQITNKLSGQIPSEIGLLTHLTVLHISRNQLNGSIP 136 (171)
Q Consensus 58 ~~v~~L~l~~~~l~~~~p~~~l~-~L~~L~~L~l~~n~l~g~~p~~~~n~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P 136 (171)
.+++.++|++|.+. .+|+ .|. .++.++.|++++|.++ .+|.++..++.|+.|+++.|.|. ..|
T Consensus 53 ~el~~i~ls~N~fk-~fp~-kft~kf~t~t~lNl~~neis-------------dvPeE~Aam~aLr~lNl~~N~l~-~~p 116 (177)
T KOG4579|consen 53 YELTKISLSDNGFK-KFPK-KFTIKFPTATTLNLANNEIS-------------DVPEELAAMPALRSLNLRFNPLN-AEP 116 (177)
T ss_pred ceEEEEecccchhh-hCCH-HHhhccchhhhhhcchhhhh-------------hchHHHhhhHHhhhcccccCccc-cch
Confidence 37888999999988 4555 444 4557888999999886 67888999999999999999999 888
Q ss_pred hhhhCccccCceeccccccc
Q 047948 137 QEVGQLTFLNHLILDLIFLI 156 (171)
Q Consensus 137 ~~~~~l~~L~~L~Ls~N~l~ 156 (171)
.-+..+.++.+|+..+|..-
T Consensus 117 ~vi~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 117 RVIAPLIKLDMLDSPENARA 136 (177)
T ss_pred HHHHHHHhHHHhcCCCCccc
Confidence 88888888888888888664
No 37
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.72 E-value=1e-05 Score=71.91 Aligned_cols=96 Identities=30% Similarity=0.366 Sum_probs=72.4
Q ss_pred CEEEEEcCCCc--cceecCCCCCCCCCCCcEEEeecCcccccccccccccccccCCccccCCcCCCEEecccCcccccCC
Q 047948 59 RVVGINLTSMS--LNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQITNKLSGQIPSEIGLLTHLTVLHISRNQLNGSIP 136 (171)
Q Consensus 59 ~v~~L~l~~~~--l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~~n~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P 136 (171)
.+++|-+.+|. +. .++..-|..++.|++||+++|.-- +.+|..++.+-+|++|++++..++ .+|
T Consensus 546 ~L~tLll~~n~~~l~-~is~~ff~~m~~LrVLDLs~~~~l------------~~LP~~I~~Li~LryL~L~~t~I~-~LP 611 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWLL-EISGEFFRSLPLLRVLDLSGNSSL------------SKLPSSIGELVHLRYLDLSDTGIS-HLP 611 (889)
T ss_pred ccceEEEeecchhhh-hcCHHHHhhCcceEEEECCCCCcc------------CcCChHHhhhhhhhcccccCCCcc-ccc
Confidence 57777777775 33 333313677999999999986533 367788999999999999999999 999
Q ss_pred hhhhCccccCceecccccccc------ccchhhhcccc
Q 047948 137 QEVGQLTFLNHLILDLIFLIF------WMVQSLVLLAI 168 (171)
Q Consensus 137 ~~~~~l~~L~~L~Ls~N~l~~------~~~~~L~~L~l 168 (171)
..+++++.|.+|++..+.... ..+.+|++|.+
T Consensus 612 ~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l 649 (889)
T KOG4658|consen 612 SGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRL 649 (889)
T ss_pred hHHHHHHhhheeccccccccccccchhhhcccccEEEe
Confidence 999999999999998776432 22667777665
No 38
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.68 E-value=1.5e-05 Score=64.66 Aligned_cols=79 Identities=27% Similarity=0.441 Sum_probs=56.7
Q ss_pred CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccccccccccCCccccCCcCCCEEecccCcccccCChh
Q 047948 59 RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQITNKLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQE 138 (171)
Q Consensus 59 ~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~~n~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~ 138 (171)
+++.++++.|.+. .+|. .+..++.|+.|+++.|.+. .+|...+.++.|+.|++++|+++ .+|..
T Consensus 141 nL~~L~l~~N~i~-~l~~-~~~~l~~L~~L~l~~N~l~-------------~l~~~~~~~~~L~~L~ls~N~i~-~l~~~ 204 (394)
T COG4886 141 NLKELDLSDNKIE-SLPS-PLRNLPNLKNLDLSFNDLS-------------DLPKLLSNLSNLNNLDLSGNKIS-DLPPE 204 (394)
T ss_pred hcccccccccchh-hhhh-hhhccccccccccCCchhh-------------hhhhhhhhhhhhhheeccCCccc-cCchh
Confidence 6899999999988 6655 6899999999999999997 34444445566666666666666 66655
Q ss_pred hhCccccCceecccc
Q 047948 139 VGQLTFLNHLILDLI 153 (171)
Q Consensus 139 ~~~l~~L~~L~Ls~N 153 (171)
+..+..|+++.+++|
T Consensus 205 ~~~~~~L~~l~~~~N 219 (394)
T COG4886 205 IELLSALEELDLSNN 219 (394)
T ss_pred hhhhhhhhhhhhcCC
Confidence 544445666666666
No 39
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=97.58 E-value=4.5e-06 Score=69.66 Aligned_cols=48 Identities=27% Similarity=0.464 Sum_probs=35.5
Q ss_pred cccccccCCccccCCcCCCEEecccCcccccCChhhhC---ccccCceecccc
Q 047948 104 TNKLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQEVGQ---LTFLNHLILDLI 153 (171)
Q Consensus 104 ~n~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~---l~~L~~L~Ls~N 153 (171)
.|+++ .+|..|.+|+.|++|-|.+|-+. .-|..+.- ..=.+||+....
T Consensus 220 cNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 220 CNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred cCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhc
Confidence 45555 68999999999999999999999 77776543 333456655443
No 40
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.57 E-value=3.2e-06 Score=72.41 Aligned_cols=47 Identities=28% Similarity=0.448 Sum_probs=25.4
Q ss_pred CCEEecccCcccccCChhhhCccccCceeccccccc-------cccchhhhccccc
Q 047948 121 LTVLHISRNQLNGSIPQEVGQLTFLNHLILDLIFLI-------FWMVQSLVLLAIW 169 (171)
Q Consensus 121 L~~L~ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~-------~~~~~~L~~L~l~ 169 (171)
|+.|.+.+|.++ .+- .+.++++|+.||+++|-+. .+.+.+|+.|.|.
T Consensus 234 L~~L~lrnN~l~-tL~-gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~Le 287 (1096)
T KOG1859|consen 234 LQLLNLRNNALT-TLR-GIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLE 287 (1096)
T ss_pred heeeeecccHHH-hhh-hHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhc
Confidence 555555555444 221 2445666777777777665 3444556666553
No 41
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.46 E-value=6.4e-05 Score=61.62 Aligned_cols=80 Identities=23% Similarity=0.213 Sum_probs=49.9
Q ss_pred CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccccccccccCCccccCCcCCCEEecccCcccccCChh
Q 047948 59 RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQITNKLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQE 138 (171)
Q Consensus 59 ~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~~n~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~ 138 (171)
.++.+++..|.+..... .+..+..|++|++++|.++... .+..++.|+.|++++|.++ .+..
T Consensus 96 ~l~~l~l~~n~i~~i~~--~l~~~~~L~~L~ls~N~I~~i~--------------~l~~l~~L~~L~l~~N~i~-~~~~- 157 (414)
T KOG0531|consen 96 SLEALDLYDNKIEKIEN--LLSSLVNLQVLDLSFNKITKLE--------------GLSTLTLLKELNLSGNLIS-DISG- 157 (414)
T ss_pred ceeeeeccccchhhccc--chhhhhcchheecccccccccc--------------chhhccchhhheeccCcch-hccC-
Confidence 67788888888773322 2566778888888888776321 2344455666666666666 3332
Q ss_pred hhCccccCceeccccccc
Q 047948 139 VGQLTFLNHLILDLIFLI 156 (171)
Q Consensus 139 ~~~l~~L~~L~Ls~N~l~ 156 (171)
+..+..|+.+++++|.+.
T Consensus 158 ~~~l~~L~~l~l~~n~i~ 175 (414)
T KOG0531|consen 158 LESLKSLKLLDLSYNRIV 175 (414)
T ss_pred CccchhhhcccCCcchhh
Confidence 334566666666666665
No 42
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.45 E-value=1.1e-05 Score=69.25 Aligned_cols=41 Identities=29% Similarity=0.143 Sum_probs=18.7
Q ss_pred ccCCcCCCEEecccCcccccCC-hhhhCccccCceecccccc
Q 047948 115 IGLLTHLTVLHISRNQLNGSIP-QEVGQLTFLNHLILDLIFL 155 (171)
Q Consensus 115 ~~~l~~L~~L~ls~N~l~g~~P-~~~~~l~~L~~L~Ls~N~l 155 (171)
+.++.+|+.||++.|-+++.-- ..++.+.+|+.|+|.+|.+
T Consensus 250 ie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 250 IENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred HHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 3444555555555555543211 1234444555555555554
No 43
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.35 E-value=8.2e-06 Score=56.75 Aligned_cols=88 Identities=22% Similarity=0.303 Sum_probs=65.0
Q ss_pred eCCCCCEEEEEcCCCccceecCCC--CCCCCCCCcEEEeecCcccccccccccccccccCCccc-cCCcCCCEEecccCc
Q 047948 54 CNHAGRVVGINLTSMSLNGTLLEF--PFSSFPHLAYLVLYNNELFYIILPQITNKLSGQIPSEI-GLLTHLTVLHISRNQ 130 (171)
Q Consensus 54 c~~~~~v~~L~l~~~~l~~~~p~~--~l~~L~~L~~L~l~~n~l~g~~p~~~~n~l~g~~p~~~-~~l~~L~~L~ls~N~ 130 (171)
|..+.....++|+++++- .+++. .+.....|+.+++++|.+. .+|+.| ...+-++.+++++|.
T Consensus 23 cedakE~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-------------~fp~kft~kf~t~t~lNl~~ne 88 (177)
T KOG4579|consen 23 CEDAKELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-------------KFPKKFTIKFPTATTLNLANNE 88 (177)
T ss_pred hHHHHHhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-------------hCCHHHhhccchhhhhhcchhh
Confidence 333335566777777653 23320 3455567777899999987 344444 344578999999999
Q ss_pred ccccCChhhhCccccCceeccccccc
Q 047948 131 LNGSIPQEVGQLTFLNHLILDLIFLI 156 (171)
Q Consensus 131 l~g~~P~~~~~l~~L~~L~Ls~N~l~ 156 (171)
++ .+|.++..++.|+.|+++.|.|.
T Consensus 89 is-dvPeE~Aam~aLr~lNl~~N~l~ 113 (177)
T KOG4579|consen 89 IS-DVPEELAAMPALRSLNLRFNPLN 113 (177)
T ss_pred hh-hchHHHhhhHHhhhcccccCccc
Confidence 99 99999999999999999999997
No 44
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.30 E-value=9.8e-05 Score=65.76 Aligned_cols=83 Identities=25% Similarity=0.254 Sum_probs=71.9
Q ss_pred CCEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccccccccccCCccccCCcCCCEEecccCcccccCCh
Q 047948 58 GRVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQITNKLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQ 137 (171)
Q Consensus 58 ~~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~~n~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~ 137 (171)
..++.|||++|.--+.+|. +++.|-+|++|+++...+. .+|..++++..|.+|++..+.....+|.
T Consensus 571 ~~LrVLDLs~~~~l~~LP~-~I~~Li~LryL~L~~t~I~-------------~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~ 636 (889)
T KOG4658|consen 571 PLLRVLDLSGNSSLSKLPS-SIGELVHLRYLDLSDTGIS-------------HLPSGLGNLKKLIYLNLEVTGRLESIPG 636 (889)
T ss_pred cceEEEECCCCCccCcCCh-HHhhhhhhhcccccCCCcc-------------ccchHHHHHHhhheeccccccccccccc
Confidence 3789999999877778999 9999999999999999886 6889999999999999998887767777
Q ss_pred hhhCccccCceeccccc
Q 047948 138 EVGQLTFLNHLILDLIF 154 (171)
Q Consensus 138 ~~~~l~~L~~L~Ls~N~ 154 (171)
....|++|++|.+..-.
T Consensus 637 i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 637 ILLELQSLRVLRLPRSA 653 (889)
T ss_pred hhhhcccccEEEeeccc
Confidence 77779999999886554
No 45
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.22 E-value=0.00047 Score=50.93 Aligned_cols=93 Identities=24% Similarity=0.282 Sum_probs=69.5
Q ss_pred CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccccccccccCCccc-cCCcCCCEEecccCcccccCCh
Q 047948 59 RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQITNKLSGQIPSEI-GLLTHLTVLHISRNQLNGSIPQ 137 (171)
Q Consensus 59 ~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~~n~l~g~~p~~~-~~l~~L~~L~ls~N~l~g~~P~ 137 (171)
+...|||+.|.+. .++ .|..++.|..|.+++|+++..-| .+ ..++.|..|.+.+|.+. .+-+
T Consensus 43 ~~d~iDLtdNdl~-~l~--~lp~l~rL~tLll~nNrIt~I~p-------------~L~~~~p~l~~L~LtnNsi~-~l~d 105 (233)
T KOG1644|consen 43 QFDAIDLTDNDLR-KLD--NLPHLPRLHTLLLNNNRITRIDP-------------DLDTFLPNLKTLILTNNSIQ-ELGD 105 (233)
T ss_pred ccceecccccchh-hcc--cCCCccccceEEecCCcceeecc-------------chhhhccccceEEecCcchh-hhhh
Confidence 5678999999976 333 37788999999999999984322 23 24567889999998887 3322
Q ss_pred --hhhCccccCceeccccccc---------cccchhhhcccc
Q 047948 138 --EVGQLTFLNHLILDLIFLI---------FWMVQSLVLLAI 168 (171)
Q Consensus 138 --~~~~l~~L~~L~Ls~N~l~---------~~~~~~L~~L~l 168 (171)
-+..+++|++|.+-+|+.. ...+++|+.||.
T Consensus 106 l~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF 147 (233)
T KOG1644|consen 106 LDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDF 147 (233)
T ss_pred cchhccCCccceeeecCCchhcccCceeEEEEecCcceEeeh
Confidence 2567889999999999887 566778888775
No 46
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=97.07 E-value=0.00023 Score=33.46 Aligned_cols=21 Identities=38% Similarity=0.585 Sum_probs=15.0
Q ss_pred CCCEEecccCcccccCChhhhC
Q 047948 120 HLTVLHISRNQLNGSIPQEVGQ 141 (171)
Q Consensus 120 ~L~~L~ls~N~l~g~~P~~~~~ 141 (171)
+|++||+++|+++ .+|+.|++
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT
T ss_pred CccEEECCCCcCE-eCChhhcC
Confidence 4677788888777 77776654
No 47
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=96.91 E-value=0.00011 Score=59.79 Aligned_cols=100 Identities=22% Similarity=0.158 Sum_probs=48.5
Q ss_pred CEEEEEcCCCccceecCCC-CCCCCCCCcEEEeecCcccccccccccccccccCCccccCCcCCCEEecccCcccccCC-
Q 047948 59 RVVGINLTSMSLNGTLLEF-PFSSFPHLAYLVLYNNELFYIILPQITNKLSGQIPSEIGLLTHLTVLHISRNQLNGSIP- 136 (171)
Q Consensus 59 ~v~~L~l~~~~l~~~~p~~-~l~~L~~L~~L~l~~n~l~g~~p~~~~n~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P- 136 (171)
+|+.|+|+.|-+..--+-. -...|++|+.|.++.|++.-.... .. -..+++|+.|.++++.|+..--
T Consensus 147 ~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s----~~-------~~~l~~lK~L~l~~CGls~k~V~ 215 (505)
T KOG3207|consen 147 NVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISS----NT-------TLLLSHLKQLVLNSCGLSWKDVQ 215 (505)
T ss_pred cceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccc----cc-------hhhhhhhheEEeccCCCCHHHHH
Confidence 6777777776654211100 123467777777777776521111 00 1134555666666666553211
Q ss_pred hhhhCccccCceeccccccc------cccchhhhccccc
Q 047948 137 QEVGQLTFLNHLILDLIFLI------FWMVQSLVLLAIW 169 (171)
Q Consensus 137 ~~~~~l~~L~~L~Ls~N~l~------~~~~~~L~~L~l~ 169 (171)
.....+|+|+.|+|..|... ..++..|++|+|.
T Consensus 216 ~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs 254 (505)
T KOG3207|consen 216 WILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLS 254 (505)
T ss_pred HHHHhCCcHHHhhhhcccccceecchhhhhhHHhhcccc
Confidence 12234455555555555211 3444455555554
No 48
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=96.82 E-value=0.00079 Score=55.20 Aligned_cols=92 Identities=27% Similarity=0.336 Sum_probs=67.6
Q ss_pred EEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccccccccccCCccccCCcCCCEEecccCcccccCChhh
Q 047948 60 VVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQITNKLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQEV 139 (171)
Q Consensus 60 v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~~n~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~ 139 (171)
+..+.+..|.+.. +-. .+..++.|..|++..|.+.. +...+..+.+|++|++++|.++...+ +
T Consensus 74 l~~l~l~~n~i~~-~~~-~l~~~~~l~~l~l~~n~i~~-------------i~~~l~~~~~L~~L~ls~N~I~~i~~--l 136 (414)
T KOG0531|consen 74 LKELNLRQNLIAK-ILN-HLSKLKSLEALDLYDNKIEK-------------IENLLSSLVNLQVLDLSFNKITKLEG--L 136 (414)
T ss_pred HHhhccchhhhhh-hhc-ccccccceeeeeccccchhh-------------cccchhhhhcchheeccccccccccc--h
Confidence 4445566666653 222 47888999999999999873 22226788999999999999994433 5
Q ss_pred hCccccCceeccccccc----cccchhhhcccc
Q 047948 140 GQLTFLNHLILDLIFLI----FWMVQSLVLLAI 168 (171)
Q Consensus 140 ~~l~~L~~L~Ls~N~l~----~~~~~~L~~L~l 168 (171)
..++.|+.|++++|.+. ...+..|..+++
T Consensus 137 ~~l~~L~~L~l~~N~i~~~~~~~~l~~L~~l~l 169 (414)
T KOG0531|consen 137 STLTLLKELNLSGNLISDISGLESLKSLKLLDL 169 (414)
T ss_pred hhccchhhheeccCcchhccCCccchhhhcccC
Confidence 56777999999999998 444677777766
No 49
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=96.75 E-value=0.00022 Score=58.01 Aligned_cols=111 Identities=24% Similarity=0.210 Sum_probs=68.2
Q ss_pred CCCEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCccccc--------ccccc-----cccccccCCccccCCcCCCE
Q 047948 57 AGRVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYI--------ILPQI-----TNKLSGQIPSEIGLLTHLTV 123 (171)
Q Consensus 57 ~~~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~--------~p~~~-----~n~l~g~~p~~~~~l~~L~~ 123 (171)
-.+++.|+++.|.+.......--..++.|+.|.++.|.++-. .|..- .|...+.--....-+..|+.
T Consensus 171 Lp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~ 250 (505)
T KOG3207|consen 171 LPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQE 250 (505)
T ss_pred cccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhh
Confidence 347888888888876433331223567788888888877621 11110 33211111112234567888
Q ss_pred EecccCcccccCC--hhhhCccccCceeccccccc------c------ccchhhhcccc
Q 047948 124 LHISRNQLNGSIP--QEVGQLTFLNHLILDLIFLI------F------WMVQSLVLLAI 168 (171)
Q Consensus 124 L~ls~N~l~g~~P--~~~~~l~~L~~L~Ls~N~l~------~------~~~~~L~~L~l 168 (171)
|||++|++- ..+ ...+.++.|..|+++.+.+. . ..+++|++|++
T Consensus 251 LdLs~N~li-~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i 308 (505)
T KOG3207|consen 251 LDLSNNNLI-DFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNI 308 (505)
T ss_pred ccccCCccc-ccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeec
Confidence 888888887 555 34667788888888888776 2 45667777776
No 50
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.74 E-value=0.00084 Score=51.14 Aligned_cols=94 Identities=24% Similarity=0.254 Sum_probs=61.4
Q ss_pred EEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccccccccccCCccccCCcCCCEEecccCcccccCChh-
Q 047948 60 VVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQITNKLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQE- 138 (171)
Q Consensus 60 v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~~n~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~- 138 (171)
+..+.+.+..++. +. .+..|+.|+.|.++.|.+.. ++.++.-.-.+++|+++.+++|++.- +..
T Consensus 45 le~ls~~n~gltt-~~--~~P~Lp~LkkL~lsdn~~~~----------~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl 109 (260)
T KOG2739|consen 45 LELLSVINVGLTT-LT--NFPKLPKLKKLELSDNYRRV----------SGGLEVLAEKAPNLKVLNLSGNKIKD--LSTL 109 (260)
T ss_pred hhhhhhhccceee-cc--cCCCcchhhhhcccCCcccc----------cccceehhhhCCceeEEeecCCcccc--cccc
Confidence 4444445544441 11 46678889999999995432 12233333455999999999999872 333
Q ss_pred --hhCccccCceeccccccc---------cccchhhhcccc
Q 047948 139 --VGQLTFLNHLILDLIFLI---------FWMVQSLVLLAI 168 (171)
Q Consensus 139 --~~~l~~L~~L~Ls~N~l~---------~~~~~~L~~L~l 168 (171)
+..+.+|..|++.++..+ +..+++|++|+-
T Consensus 110 ~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~ 150 (260)
T KOG2739|consen 110 RPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDG 150 (260)
T ss_pred chhhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccc
Confidence 345667788888887665 677778888764
No 51
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.67 E-value=0.001 Score=50.74 Aligned_cols=63 Identities=22% Similarity=0.224 Sum_probs=48.2
Q ss_pred CCCCCCcEEEeecCcccccccccccccccccCCccccCCcCCCEEecccC--cccccCChhhhCccccCceeccccccc
Q 047948 80 SSFPHLAYLVLYNNELFYIILPQITNKLSGQIPSEIGLLTHLTVLHISRN--QLNGSIPQEVGQLTFLNHLILDLIFLI 156 (171)
Q Consensus 80 ~~L~~L~~L~l~~n~l~g~~p~~~~n~l~g~~p~~~~~l~~L~~L~ls~N--~l~g~~P~~~~~l~~L~~L~Ls~N~l~ 156 (171)
-.+..|+.+.+.+..++. + ..+..|++|+.|+++.| +..+.++.-...+++|+++++++|++.
T Consensus 40 d~~~~le~ls~~n~gltt-------------~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTT-------------L-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred ccccchhhhhhhccceee-------------c-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence 344556666666666541 1 34668899999999999 777777777777899999999999998
No 52
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.58 E-value=0.0032 Score=46.58 Aligned_cols=73 Identities=21% Similarity=0.203 Sum_probs=54.7
Q ss_pred CCCcEEEeecCcccccccccccccccccCCccccCCcCCCEEecccCcccccCChhhhCccccCceeccccccc------
Q 047948 83 PHLAYLVLYNNELFYIILPQITNKLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQEVGQLTFLNHLILDLIFLI------ 156 (171)
Q Consensus 83 ~~L~~L~l~~n~l~g~~p~~~~n~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~------ 156 (171)
.....+||++|.+.. + ..+..++.|..|.++.|+++..-|.--.-++.|..|.|++|.++
T Consensus 42 d~~d~iDLtdNdl~~-------------l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~ 107 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRK-------------L-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLD 107 (233)
T ss_pred cccceecccccchhh-------------c-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcc
Confidence 456678999998752 1 45778899999999999999555544445678999999999998
Q ss_pred -cccchhhhccccc
Q 047948 157 -FWMVQSLVLLAIW 169 (171)
Q Consensus 157 -~~~~~~L~~L~l~ 169 (171)
...++.|++|.+.
T Consensus 108 pLa~~p~L~~Ltll 121 (233)
T KOG1644|consen 108 PLASCPKLEYLTLL 121 (233)
T ss_pred hhccCCccceeeec
Confidence 3445577777653
No 53
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.40 E-value=0.0012 Score=57.59 Aligned_cols=37 Identities=14% Similarity=0.283 Sum_probs=21.3
Q ss_pred CEEEEEcCCCcccee-cCCCCCCCCCCCcEEEeecCccc
Q 047948 59 RVVGINLTSMSLNGT-LLEFPFSSFPHLAYLVLYNNELF 96 (171)
Q Consensus 59 ~v~~L~l~~~~l~~~-~p~~~l~~L~~L~~L~l~~n~l~ 96 (171)
.+++|.+.+..+... ... ...++++|..||+|+.+++
T Consensus 149 sL~sL~i~~~~~~~~dF~~-lc~sFpNL~sLDIS~TnI~ 186 (699)
T KOG3665|consen 149 SLRSLVISGRQFDNDDFSQ-LCASFPNLRSLDISGTNIS 186 (699)
T ss_pred ccceEEecCceecchhHHH-HhhccCccceeecCCCCcc
Confidence 466666666554322 112 3456677777777777665
No 54
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=96.35 E-value=7.5e-05 Score=56.37 Aligned_cols=83 Identities=18% Similarity=0.140 Sum_probs=71.0
Q ss_pred CCEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccccccccccCCccccCCcCCCEEecccCcccccCCh
Q 047948 58 GRVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQITNKLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQ 137 (171)
Q Consensus 58 ~~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~~n~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~ 137 (171)
.+++.||++.|++. .+.. .|.-++.|..|+++.|.+. ..|..++....++.+++..|..+ ..|.
T Consensus 42 kr~tvld~~s~r~v-n~~~-n~s~~t~~~rl~~sknq~~-------------~~~~d~~q~~e~~~~~~~~n~~~-~~p~ 105 (326)
T KOG0473|consen 42 KRVTVLDLSSNRLV-NLGK-NFSILTRLVRLDLSKNQIK-------------FLPKDAKQQRETVNAASHKNNHS-QQPK 105 (326)
T ss_pred ceeeeehhhhhHHH-hhcc-chHHHHHHHHHhccHhhHh-------------hChhhHHHHHHHHHHHhhccchh-hCCc
Confidence 38999999999976 3444 5788889999999998876 57788888889999999999888 8999
Q ss_pred hhhCccccCceeccccccc
Q 047948 138 EVGQLTFLNHLILDLIFLI 156 (171)
Q Consensus 138 ~~~~l~~L~~L~Ls~N~l~ 156 (171)
+++..+.++++++-.|.|.
T Consensus 106 s~~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 106 SQKKEPHPKKNEQKKTEFF 124 (326)
T ss_pred cccccCCcchhhhccCcch
Confidence 9999999999999988876
No 55
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.10 E-value=0.0012 Score=51.71 Aligned_cols=85 Identities=22% Similarity=0.199 Sum_probs=60.9
Q ss_pred CEEEEEcCCCccce--ecCCCCCCCCCCCcEEEeecCcccccccccccccccccCCccccCCcCCCEEecccCcccccCC
Q 047948 59 RVVGINLTSMSLNG--TLLEFPFSSFPHLAYLVLYNNELFYIILPQITNKLSGQIPSEIGLLTHLTVLHISRNQLNGSIP 136 (171)
Q Consensus 59 ~v~~L~l~~~~l~~--~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~~n~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P 136 (171)
+|..+||.+|.++. .+.. -+..|+.|+.|+++.|.+...|- ..| ..+.+|+.|-|.+..+.+..-
T Consensus 72 ~v~elDL~~N~iSdWseI~~-ile~lP~l~~LNls~N~L~s~I~---------~lp---~p~~nl~~lVLNgT~L~w~~~ 138 (418)
T KOG2982|consen 72 DVKELDLTGNLISDWSEIGA-ILEQLPALTTLNLSCNSLSSDIK---------SLP---LPLKNLRVLVLNGTGLSWTQS 138 (418)
T ss_pred hhhhhhcccchhccHHHHHH-HHhcCccceEeeccCCcCCCccc---------cCc---ccccceEEEEEcCCCCChhhh
Confidence 78999999999873 2333 35678999999999999874332 233 245678888888877776544
Q ss_pred h-hhhCccccCceeccccccc
Q 047948 137 Q-EVGQLTFLNHLILDLIFLI 156 (171)
Q Consensus 137 ~-~~~~l~~L~~L~Ls~N~l~ 156 (171)
. .+..++.++.|+++.|++.
T Consensus 139 ~s~l~~lP~vtelHmS~N~~r 159 (418)
T KOG2982|consen 139 TSSLDDLPKVTELHMSDNSLR 159 (418)
T ss_pred hhhhhcchhhhhhhhccchhh
Confidence 4 3567788888888888554
No 56
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=95.81 E-value=0.0019 Score=51.25 Aligned_cols=109 Identities=17% Similarity=0.129 Sum_probs=59.8
Q ss_pred CEEEEEcCCCccceecCCCC----CCCCCCCcEEEeecCccccc---c-cc---------------cc------cccccc
Q 047948 59 RVVGINLTSMSLNGTLLEFP----FSSFPHLAYLVLYNNELFYI---I-LP---------------QI------TNKLSG 109 (171)
Q Consensus 59 ~v~~L~l~~~~l~~~~p~~~----l~~L~~L~~L~l~~n~l~g~---~-p~---------------~~------~n~l~g 109 (171)
+++.|+|+.|.+.-..++ . +..+..|++|.+.+|.+.-. . -. .+ .|++..
T Consensus 93 ~L~~ldLSDNA~G~~g~~-~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen 171 (382)
T KOG1909|consen 93 KLQKLDLSDNAFGPKGIR-GLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLEN 171 (382)
T ss_pred ceeEeeccccccCccchH-HHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccccc
Confidence 788888888877633222 2 34567778888887776411 0 00 00 333322
Q ss_pred c----CCccccCCcCCCEEecccCcccc--c--CChhhhCccccCceeccccccc----------cccchhhhcccc
Q 047948 110 Q----IPSEIGLLTHLTVLHISRNQLNG--S--IPQEVGQLTFLNHLILDLIFLI----------FWMVQSLVLLAI 168 (171)
Q Consensus 110 ~----~p~~~~~l~~L~~L~ls~N~l~g--~--~P~~~~~l~~L~~L~Ls~N~l~----------~~~~~~L~~L~l 168 (171)
. +-..+...+.|+.+.+++|.+.- . +-..+..+++|++|||.+|-|+ ....++|++|++
T Consensus 172 ~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l 248 (382)
T KOG1909|consen 172 GGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNL 248 (382)
T ss_pred ccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecc
Confidence 1 11223344566666666665541 1 1123566777888888888776 334445555554
No 57
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.41 E-value=0.0092 Score=26.06 Aligned_cols=13 Identities=38% Similarity=0.629 Sum_probs=5.5
Q ss_pred CCCEEecccCccc
Q 047948 120 HLTVLHISRNQLN 132 (171)
Q Consensus 120 ~L~~L~ls~N~l~ 132 (171)
+|+.|++++|+|+
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 4555555555554
No 58
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.87 E-value=0.00078 Score=52.24 Aligned_cols=77 Identities=21% Similarity=0.223 Sum_probs=43.9
Q ss_pred CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccccccccccCCccccCCcCCCEEecccCcccccCChh
Q 047948 59 RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQITNKLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQE 138 (171)
Q Consensus 59 ~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~~n~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~ 138 (171)
-|..|.|+-|.++ .+. .+..++.|++|+|..|.+...- ++ ..+.++++|+.|.|..|...|.-+..
T Consensus 42 ~lEVLsLSvNkIs-sL~--pl~rCtrLkElYLRkN~I~sld----------EL-~YLknlpsLr~LWL~ENPCc~~ag~n 107 (388)
T KOG2123|consen 42 LLEVLSLSVNKIS-SLA--PLQRCTRLKELYLRKNCIESLD----------EL-EYLKNLPSLRTLWLDENPCCGEAGQN 107 (388)
T ss_pred cceeEEeeccccc-cch--hHHHHHHHHHHHHHhcccccHH----------HH-HHHhcCchhhhHhhccCCcccccchh
Confidence 4566666666665 222 2556667777777766654210 01 23456677777777777776665543
Q ss_pred -----hhCccccCcee
Q 047948 139 -----VGQLTFLNHLI 149 (171)
Q Consensus 139 -----~~~l~~L~~L~ 149 (171)
+.-+++|+.||
T Consensus 108 YR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 108 YRRKVLRVLPNLKKLD 123 (388)
T ss_pred HHHHHHHHcccchhcc
Confidence 23455555554
No 59
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=94.65 E-value=0.034 Score=26.82 Aligned_cols=20 Identities=45% Similarity=0.665 Sum_probs=14.4
Q ss_pred CcCCCEEecccCcccccCChh
Q 047948 118 LTHLTVLHISRNQLNGSIPQE 138 (171)
Q Consensus 118 l~~L~~L~ls~N~l~g~~P~~ 138 (171)
+++|+.|++++|+++ .+|..
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~ 20 (26)
T smart00369 1 LPNLRELDLSNNQLS-SLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHH
Confidence 456788888888887 66654
No 60
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=94.65 E-value=0.034 Score=26.82 Aligned_cols=20 Identities=45% Similarity=0.665 Sum_probs=14.4
Q ss_pred CcCCCEEecccCcccccCChh
Q 047948 118 LTHLTVLHISRNQLNGSIPQE 138 (171)
Q Consensus 118 l~~L~~L~ls~N~l~g~~P~~ 138 (171)
+++|+.|++++|+++ .+|..
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~ 20 (26)
T smart00370 1 LPNLRELDLSNNQLS-SLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHH
Confidence 456788888888887 66654
No 61
>PRK15386 type III secretion protein GogB; Provisional
Probab=94.63 E-value=0.091 Score=43.22 Aligned_cols=10 Identities=20% Similarity=0.175 Sum_probs=5.7
Q ss_pred CCcEEEeecC
Q 047948 84 HLAYLVLYNN 93 (171)
Q Consensus 84 ~L~~L~l~~n 93 (171)
.|+.|++++|
T Consensus 95 nLe~L~Ls~C 104 (426)
T PRK15386 95 GLEKLTVCHC 104 (426)
T ss_pred hhhheEccCc
Confidence 4555555555
No 62
>PRK15386 type III secretion protein GogB; Provisional
Probab=94.19 E-value=0.08 Score=43.54 Aligned_cols=13 Identities=0% Similarity=0.059 Sum_probs=6.8
Q ss_pred CEEEEEcCCCccc
Q 047948 59 RVVGINLTSMSLN 71 (171)
Q Consensus 59 ~v~~L~l~~~~l~ 71 (171)
+.+.|+++++.++
T Consensus 53 ~l~~L~Is~c~L~ 65 (426)
T PRK15386 53 ASGRLYIKDCDIE 65 (426)
T ss_pred CCCEEEeCCCCCc
Confidence 3455555555444
No 63
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=93.62 E-value=0.038 Score=48.43 Aligned_cols=62 Identities=15% Similarity=0.207 Sum_probs=35.4
Q ss_pred CEEEEEcCCCccc-eecCCCCC-CCCCCCcEEEeecCcccccccccccccccccCCccccCCcCCCEEecccCccc
Q 047948 59 RVVGINLTSMSLN-GTLLEFPF-SSFPHLAYLVLYNNELFYIILPQITNKLSGQIPSEIGLLTHLTVLHISRNQLN 132 (171)
Q Consensus 59 ~v~~L~l~~~~l~-~~~p~~~l-~~L~~L~~L~l~~n~l~g~~p~~~~n~l~g~~p~~~~~l~~L~~L~ls~N~l~ 132 (171)
++..|++++...- ...+. .+ .-|+.|+.|.+.+-.+... ..-.-...+++|..||+|+.+++
T Consensus 123 nL~~LdI~G~~~~s~~W~~-kig~~LPsL~sL~i~~~~~~~~-----------dF~~lc~sFpNL~sLDIS~TnI~ 186 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPK-KIGTMLPSLRSLVISGRQFDND-----------DFSQLCASFPNLRSLDISGTNIS 186 (699)
T ss_pred hhhhcCccccchhhccHHH-HHhhhCcccceEEecCceecch-----------hHHHHhhccCccceeecCCCCcc
Confidence 5666777665432 11222 22 2477888888887665421 11122356677888888887776
No 64
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=92.67 E-value=0.047 Score=42.53 Aligned_cols=96 Identities=18% Similarity=0.176 Sum_probs=58.4
Q ss_pred CEEEEEcCCCccceecCC---CCCCCCCCCcEEEeecCcccccccccccccccccCCccccCCcCCCEEecccCcccccC
Q 047948 59 RVVGINLTSMSLNGTLLE---FPFSSFPHLAYLVLYNNELFYIILPQITNKLSGQIPSEIGLLTHLTVLHISRNQLNGSI 135 (171)
Q Consensus 59 ~v~~L~l~~~~l~~~~p~---~~l~~L~~L~~L~l~~n~l~g~~p~~~~n~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~ 135 (171)
.++.++|++|.+...-.. ..+.+-.+|+...++.- ++|..-..+.-.+.- +-+.+.++++|+..+||.|.|.-..
T Consensus 31 ~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~-Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 31 ELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLVM-LLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred ceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHHH-HHHHHhcCCcceeeeccccccCccc
Confidence 678899999887632111 02344455666655543 222221111111111 1134567889999999999998888
Q ss_pred Chhhh----CccccCceeccccccc
Q 047948 136 PQEVG----QLTFLNHLILDLIFLI 156 (171)
Q Consensus 136 P~~~~----~l~~L~~L~Ls~N~l~ 156 (171)
|+.++ +.+.|.+|.+++|.+.
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnGlG 133 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNGLG 133 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCCCC
Confidence 87654 4567899999999876
No 65
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=91.73 E-value=0.07 Score=42.64 Aligned_cols=42 Identities=17% Similarity=0.059 Sum_probs=18.4
Q ss_pred ccCCcCCCEEecccCcccccCChhh-----hCccccCceeccccccc
Q 047948 115 IGLLTHLTVLHISRNQLNGSIPQEV-----GQLTFLNHLILDLIFLI 156 (171)
Q Consensus 115 ~~~l~~L~~L~ls~N~l~g~~P~~~-----~~l~~L~~L~Ls~N~l~ 156 (171)
+..+++|+.|.++++.++..=-..| ...++|++|.+.+|.++
T Consensus 237 L~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt 283 (382)
T KOG1909|consen 237 LSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEIT 283 (382)
T ss_pred hcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhH
Confidence 3344455555555555442211111 12345555555555554
No 66
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=91.09 E-value=0.077 Score=25.01 Aligned_cols=14 Identities=21% Similarity=0.005 Sum_probs=6.4
Q ss_pred cccCceeccccccc
Q 047948 143 TFLNHLILDLIFLI 156 (171)
Q Consensus 143 ~~L~~L~Ls~N~l~ 156 (171)
++|++|+|++|+|+
T Consensus 2 ~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 2 PNLETLDLSNNQIT 15 (24)
T ss_dssp TT-SEEE-TSSBEH
T ss_pred CCCCEEEccCCcCC
Confidence 34555555555554
No 67
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.17 E-value=0.11 Score=40.98 Aligned_cols=72 Identities=29% Similarity=0.357 Sum_probs=49.1
Q ss_pred ccceeeC--CCCCEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccccccccccCCccccCCcCCCEEec
Q 047948 49 WSGIHCN--HAGRVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQITNKLSGQIPSEIGLLTHLTVLHI 126 (171)
Q Consensus 49 w~gv~c~--~~~~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~~n~l~g~~p~~~~~l~~L~~L~l 126 (171)
|.-|.|. .-.+++.|+++.|++...+.. .-..+.+|+.|.|.+..+.-. ..-..+..++.++.|.+
T Consensus 86 WseI~~ile~lP~l~~LNls~N~L~s~I~~-lp~p~~nl~~lVLNgT~L~w~-----------~~~s~l~~lP~vtelHm 153 (418)
T KOG2982|consen 86 WSEIGAILEQLPALTTLNLSCNSLSSDIKS-LPLPLKNLRVLVLNGTGLSWT-----------QSTSSLDDLPKVTELHM 153 (418)
T ss_pred HHHHHHHHhcCccceEeeccCCcCCCcccc-CcccccceEEEEEcCCCCChh-----------hhhhhhhcchhhhhhhh
Confidence 6655554 456899999999999866654 225778899999988776421 11233456677778888
Q ss_pred ccCccc
Q 047948 127 SRNQLN 132 (171)
Q Consensus 127 s~N~l~ 132 (171)
|.|.+.
T Consensus 154 S~N~~r 159 (418)
T KOG2982|consen 154 SDNSLR 159 (418)
T ss_pred ccchhh
Confidence 877443
No 68
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=90.17 E-value=0.0073 Score=45.89 Aligned_cols=69 Identities=22% Similarity=0.236 Sum_probs=58.1
Q ss_pred cCCCCCCCCCCCcEEEeecCcccccccccccccccccCCccccCCcCCCEEecccCcccccCChhhhCccccCceecccc
Q 047948 74 LLEFPFSSFPHLAYLVLYNNELFYIILPQITNKLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQEVGQLTFLNHLILDLI 153 (171)
Q Consensus 74 ~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~~n~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~L~Ls~N 153 (171)
+|-.++..+...+.||++.|++. .+-..+..++.|..||++.|++. .+|..++....+..+++..|
T Consensus 33 ~~v~ei~~~kr~tvld~~s~r~v-------------n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n 98 (326)
T KOG0473|consen 33 IPVREIASFKRVTVLDLSSNRLV-------------NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKN 98 (326)
T ss_pred cchhhhhccceeeeehhhhhHHH-------------hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhcc
Confidence 34336778888999999999875 33456778899999999999999 99999999999999999999
Q ss_pred ccc
Q 047948 154 FLI 156 (171)
Q Consensus 154 ~l~ 156 (171)
..+
T Consensus 99 ~~~ 101 (326)
T KOG0473|consen 99 NHS 101 (326)
T ss_pred chh
Confidence 876
No 69
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=89.72 E-value=0.3 Score=38.19 Aligned_cols=37 Identities=30% Similarity=0.327 Sum_probs=25.5
Q ss_pred CEEEEEcCCCccceecCCCCC----CCCCCCcEEEeecCccc
Q 047948 59 RVVGINLTSMSLNGTLLEFPF----SSFPHLAYLVLYNNELF 96 (171)
Q Consensus 59 ~v~~L~l~~~~l~~~~p~~~l----~~L~~L~~L~l~~n~l~ 96 (171)
++..++|+.|.+....|+ .+ ..-+.|.+|.+++|.+-
T Consensus 93 ~l~~v~LSDNAfg~~~~e-~L~d~is~~t~l~HL~l~NnGlG 133 (388)
T COG5238 93 RLQKVDLSDNAFGSEFPE-ELGDLISSSTDLVHLKLNNNGLG 133 (388)
T ss_pred cceeeeccccccCcccch-HHHHHHhcCCCceeEEeecCCCC
Confidence 677888888887755554 43 34466788888888764
No 70
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=88.57 E-value=0.29 Score=23.81 Aligned_cols=18 Identities=44% Similarity=0.707 Sum_probs=14.0
Q ss_pred cCCCEEecccCcccccCCh
Q 047948 119 THLTVLHISRNQLNGSIPQ 137 (171)
Q Consensus 119 ~~L~~L~ls~N~l~g~~P~ 137 (171)
.+|+.|++++|+++ .+|+
T Consensus 2 ~~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLT-SLPE 19 (26)
T ss_pred cccceeecCCCccc-cCcc
Confidence 36788888888888 7776
No 71
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.65 E-value=0.15 Score=39.90 Aligned_cols=80 Identities=23% Similarity=0.211 Sum_probs=61.1
Q ss_pred CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccccccccccCCccccCCcCCCEEecccCcccccCCh-
Q 047948 59 RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQITNKLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQ- 137 (171)
Q Consensus 59 ~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~~n~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~- 137 (171)
.|+.|+.=++++. .+.- ...++.|++|.|+-|+++.. ..+..+++|++|.|..|.+. .+.+
T Consensus 20 ~vkKLNcwg~~L~-DIsi--c~kMp~lEVLsLSvNkIssL--------------~pl~rCtrLkElYLRkN~I~-sldEL 81 (388)
T KOG2123|consen 20 NVKKLNCWGCGLD-DISI--CEKMPLLEVLSLSVNKISSL--------------APLQRCTRLKELYLRKNCIE-SLDEL 81 (388)
T ss_pred HhhhhcccCCCcc-HHHH--HHhcccceeEEeeccccccc--------------hhHHHHHHHHHHHHHhcccc-cHHHH
Confidence 4566666666665 2322 45789999999999998732 34678899999999999888 5544
Q ss_pred -hhhCccccCceeccccccc
Q 047948 138 -EVGQLTFLNHLILDLIFLI 156 (171)
Q Consensus 138 -~~~~l~~L~~L~Ls~N~l~ 156 (171)
-+.++++|+.|.|..|.-.
T Consensus 82 ~YLknlpsLr~LWL~ENPCc 101 (388)
T KOG2123|consen 82 EYLKNLPSLRTLWLDENPCC 101 (388)
T ss_pred HHHhcCchhhhHhhccCCcc
Confidence 3678999999999999876
No 72
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=86.64 E-value=0.053 Score=42.77 Aligned_cols=110 Identities=26% Similarity=0.285 Sum_probs=62.1
Q ss_pred CEEEEEcCCCc-cceecCCCCCCCCCCCcEEEeecCcccccccccc---------cccccc--------cCCccccCCcC
Q 047948 59 RVVGINLTSMS-LNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI---------TNKLSG--------QIPSEIGLLTH 120 (171)
Q Consensus 59 ~v~~L~l~~~~-l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~---------~n~l~g--------~~p~~~~~l~~ 120 (171)
.+++++++... ++..--..-+.+++.|..|+++.+.+....-..+ .-+++| .+..-...+++
T Consensus 235 ~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~ 314 (419)
T KOG2120|consen 235 NLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPN 314 (419)
T ss_pred cceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCc
Confidence 56666666532 2211000024567778888888877664432111 111222 12122356788
Q ss_pred CCEEecccCcc-cccCChhhhCccccCceeccccccc-------cccchhhhcccc
Q 047948 121 LTVLHISRNQL-NGSIPQEVGQLTFLNHLILDLIFLI-------FWMVQSLVLLAI 168 (171)
Q Consensus 121 L~~L~ls~N~l-~g~~P~~~~~l~~L~~L~Ls~N~l~-------~~~~~~L~~L~l 168 (171)
|.+||||.+.. +...-.+|.+++.|++|.++....- ....++|.+|++
T Consensus 315 l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv 370 (419)
T KOG2120|consen 315 LVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDV 370 (419)
T ss_pred eeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEe
Confidence 99999997653 3334445677888888888876543 455667777776
No 73
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=84.96 E-value=0.061 Score=42.45 Aligned_cols=14 Identities=29% Similarity=0.185 Sum_probs=11.1
Q ss_pred CCcEEEeecCcccc
Q 047948 84 HLAYLVLYNNELFY 97 (171)
Q Consensus 84 ~L~~L~l~~n~l~g 97 (171)
.|++|||++..++.
T Consensus 186 Rlq~lDLS~s~it~ 199 (419)
T KOG2120|consen 186 RLQHLDLSNSVITV 199 (419)
T ss_pred hhHHhhcchhheeH
Confidence 58889999887764
No 74
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=83.32 E-value=1 Score=21.89 Aligned_cols=14 Identities=36% Similarity=0.608 Sum_probs=8.1
Q ss_pred cCCCEEecccCccc
Q 047948 119 THLTVLHISRNQLN 132 (171)
Q Consensus 119 ~~L~~L~ls~N~l~ 132 (171)
++|+.|+++.|+++
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 45566666666554
No 75
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=82.62 E-value=4.8 Score=26.64 Aligned_cols=33 Identities=21% Similarity=0.309 Sum_probs=15.4
Q ss_pred CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecC
Q 047948 59 RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNN 93 (171)
Q Consensus 59 ~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n 93 (171)
+++.+.+.. .+. .++...|..++.|+.+.+..+
T Consensus 13 ~l~~i~~~~-~~~-~I~~~~F~~~~~l~~i~~~~~ 45 (129)
T PF13306_consen 13 NLESITFPN-TIK-KIGENAFSNCTSLKSINFPNN 45 (129)
T ss_dssp T--EEEETS-T---EE-TTTTTT-TT-SEEEESST
T ss_pred CCCEEEECC-Cee-EeChhhccccccccccccccc
Confidence 466666663 344 344336677767777777654
No 76
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=80.56 E-value=1.3 Score=21.65 Aligned_cols=13 Identities=38% Similarity=0.542 Sum_probs=6.4
Q ss_pred CCCEEecccCccc
Q 047948 120 HLTVLHISRNQLN 132 (171)
Q Consensus 120 ~L~~L~ls~N~l~ 132 (171)
.|++|||++|.+.
T Consensus 3 ~L~~LdL~~N~i~ 15 (28)
T smart00368 3 SLRELDLSNNKLG 15 (28)
T ss_pred ccCEEECCCCCCC
Confidence 3455555555443
No 77
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=70.15 E-value=12 Score=24.72 Aligned_cols=76 Identities=18% Similarity=0.207 Sum_probs=41.0
Q ss_pred CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccccccccccCC-ccccCCcCCCEEecccCcccccCCh
Q 047948 59 RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQITNKLSGQIP-SEIGLLTHLTVLHISRNQLNGSIPQ 137 (171)
Q Consensus 59 ~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~~n~l~g~~p-~~~~~l~~L~~L~ls~N~l~g~~P~ 137 (171)
.++.+.+..+ +. .++...|..+..++.+.+.. .+. .++ ..+..+++|+.+++..+ +.-.-..
T Consensus 36 ~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~-~~~-------------~i~~~~F~~~~~l~~i~~~~~-~~~i~~~ 98 (129)
T PF13306_consen 36 SLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN-NLK-------------SIGDNAFSNCTNLKNIDIPSN-ITEIGSS 98 (129)
T ss_dssp T-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS-TT--------------EE-TTTTTT-TTECEEEETTT--BEEHTT
T ss_pred cccccccccc-cc-ccceeeeecccccccccccc-ccc-------------ccccccccccccccccccCcc-ccEEchh
Confidence 5778888774 54 34443788887899998865 322 111 34566888888888765 5523334
Q ss_pred hhhCccccCceeccc
Q 047948 138 EVGQLTFLNHLILDL 152 (171)
Q Consensus 138 ~~~~l~~L~~L~Ls~ 152 (171)
.|.++ .|+.+.+..
T Consensus 99 ~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 99 SFSNC-NLKEINIPS 112 (129)
T ss_dssp TTTT--T--EEE-TT
T ss_pred hhcCC-CceEEEECC
Confidence 46665 777777664
No 78
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.80 E-value=1.4 Score=32.89 Aligned_cols=82 Identities=21% Similarity=0.154 Sum_probs=49.5
Q ss_pred CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccccccccccCCcccc-CCcCCCEEecccCc-ccccCC
Q 047948 59 RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQITNKLSGQIPSEIG-LLTHLTVLHISRNQ-LNGSIP 136 (171)
Q Consensus 59 ~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~~n~l~g~~p~~~~-~l~~L~~L~ls~N~-l~g~~P 136 (171)
.|+.++-++..+...--. .+..++.++.|.+.++.--+- -.+ ..++ -.++|+.|++++|. ++..=-
T Consensus 102 ~IeaVDAsds~I~~eGle-~L~~l~~i~~l~l~~ck~~dD------~~L-----~~l~~~~~~L~~L~lsgC~rIT~~GL 169 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLE-HLRDLRSIKSLSLANCKYFDD------WCL-----ERLGGLAPSLQDLDLSGCPRITDGGL 169 (221)
T ss_pred eEEEEecCCchHHHHHHH-HHhccchhhhheeccccchhh------HHH-----HHhcccccchheeeccCCCeechhHH
Confidence 477888888877655445 677788888888887753210 000 1111 33678899988653 332222
Q ss_pred hhhhCccccCceeccc
Q 047948 137 QEVGQLTFLNHLILDL 152 (171)
Q Consensus 137 ~~~~~l~~L~~L~Ls~ 152 (171)
..+..+++|+.|.+.+
T Consensus 170 ~~L~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 170 ACLLKLKNLRRLHLYD 185 (221)
T ss_pred HHHHHhhhhHHHHhcC
Confidence 3456667777776654
No 79
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=50.50 E-value=8.4 Score=33.00 Aligned_cols=40 Identities=28% Similarity=0.273 Sum_probs=21.3
Q ss_pred CCcCCCEEecccCcccccCChhhhCc--cccCceeccccccc
Q 047948 117 LLTHLTVLHISRNQLNGSIPQEVGQL--TFLNHLILDLIFLI 156 (171)
Q Consensus 117 ~l~~L~~L~ls~N~l~g~~P~~~~~l--~~L~~L~Ls~N~l~ 156 (171)
..++|..|+|++|.-.-..-.++.++ ..|++|-+.+|++.
T Consensus 242 ~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 242 IAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLC 283 (585)
T ss_pred hcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccc
Confidence 34667777777772111111222222 24677777777775
No 80
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=35.98 E-value=25 Score=16.41 Aligned_cols=11 Identities=27% Similarity=0.298 Sum_probs=5.3
Q ss_pred cCCCEEecccC
Q 047948 119 THLTVLHISRN 129 (171)
Q Consensus 119 ~~L~~L~ls~N 129 (171)
++|+.|+++++
T Consensus 2 ~~L~~L~l~~C 12 (26)
T smart00367 2 PNLRELDLSGC 12 (26)
T ss_pred CCCCEeCCCCC
Confidence 34555555544
No 81
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=25.33 E-value=47 Score=34.23 Aligned_cols=32 Identities=16% Similarity=0.156 Sum_probs=25.8
Q ss_pred EcCCCccceecCCCCCCCCCCCcEEEeecCccc
Q 047948 64 NLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELF 96 (171)
Q Consensus 64 ~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~ 96 (171)
||++|+|+ .++...|..|.+|+.|+|++|.+.
T Consensus 1 DLSnN~Ls-tLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKIS-TIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCC-ccChHHhccCCCceEEEeeCCccc
Confidence 57888888 555547888999999999998775
No 82
>PF05725 FNIP: FNIP Repeat; InterPro: IPR008615 This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum (Slime mould). It appears to be related to IPR001611 from INTERPRO. The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.
Probab=24.35 E-value=41 Score=18.05 Aligned_cols=11 Identities=27% Similarity=0.023 Sum_probs=5.0
Q ss_pred cccchhhhccc
Q 047948 157 FWMVQSLVLLA 167 (171)
Q Consensus 157 ~~~~~~L~~L~ 167 (171)
+.++++|+.|.
T Consensus 30 ~~lP~sl~~L~ 40 (44)
T PF05725_consen 30 GSLPNSLKSLS 40 (44)
T ss_pred CccCCCceEEE
Confidence 44444444443
Done!