Query 047948
Match_columns 171
No_of_seqs 189 out of 1947
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 07:58:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047948.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047948hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ogq_A PGIP-2, polygalacturona 99.9 2E-25 6.8E-30 174.1 13.2 154 7-169 2-182 (313)
2 4eco_A Uncharacterized protein 99.9 6.3E-24 2.1E-28 179.7 11.6 82 7-95 26-117 (636)
3 3rgz_A Protein brassinosteroid 99.9 1.1E-23 3.6E-28 181.6 12.0 159 1-169 2-208 (768)
4 4ecn_A Leucine-rich repeat pro 99.9 1.8E-22 6.1E-27 175.9 10.7 86 5-98 263-363 (876)
5 4fcg_A Uncharacterized protein 99.8 1.9E-20 6.4E-25 146.9 4.4 146 5-156 21-196 (328)
6 3e6j_A Variable lymphocyte rec 99.7 2.5E-17 8.5E-22 122.9 9.7 126 42-169 14-167 (229)
7 2v9t_B SLIT homolog 2 protein 99.7 4E-16 1.4E-20 115.7 9.7 123 46-169 10-160 (220)
8 2o6s_A Variable lymphocyte rec 99.7 4.4E-16 1.5E-20 114.0 9.5 124 45-169 5-156 (208)
9 2v70_A SLIT-2, SLIT homolog 2 99.6 6.4E-16 2.2E-20 114.6 8.8 124 46-169 10-161 (220)
10 3m19_A Variable lymphocyte rec 99.6 1.2E-15 4E-20 115.0 7.1 109 59-168 60-186 (251)
11 2o6q_A Variable lymphocyte rec 99.6 2.1E-15 7E-20 114.8 8.4 97 59-156 38-146 (270)
12 1w8a_A SLIT protein; signaling 99.6 2.2E-15 7.6E-20 109.4 7.8 111 46-156 7-139 (192)
13 3rgz_A Protein brassinosteroid 99.6 3.2E-15 1.1E-19 128.8 8.1 57 104-160 641-697 (768)
14 2o6r_A Variable lymphocyte rec 99.5 1.8E-14 6.1E-19 103.0 8.8 111 46-157 6-138 (177)
15 3v47_A TOLL-like receptor 5B a 99.5 1.5E-14 5.3E-19 116.9 8.3 125 44-169 5-162 (455)
16 1ogq_A PGIP-2, polygalacturona 99.5 6.6E-15 2.2E-19 114.4 5.5 98 59-157 77-188 (313)
17 2wfh_A SLIT homolog 2 protein 99.5 2.4E-14 8.3E-19 104.1 7.7 109 46-156 9-139 (193)
18 2z81_A CD282 antigen, TOLL-lik 99.5 1.3E-14 4.3E-19 120.0 6.7 121 46-168 3-155 (549)
19 4g8a_A TOLL-like receptor 4; l 99.5 3.2E-14 1.1E-18 118.7 9.0 110 59-169 53-181 (635)
20 3m19_A Variable lymphocyte rec 99.5 5.2E-14 1.8E-18 105.9 8.7 110 59-169 36-163 (251)
21 2xot_A Amphoterin-induced prot 99.5 7.1E-14 2.4E-18 110.6 9.0 123 46-169 17-171 (361)
22 3g39_A Variable lymphocyte rec 99.5 7.4E-14 2.5E-18 99.5 8.0 98 46-156 8-115 (170)
23 3vq2_A TLR4, TOLL-like recepto 99.5 9.2E-14 3.1E-18 116.2 9.5 97 59-156 33-141 (606)
24 2v70_A SLIT-2, SLIT homolog 2 99.5 1.3E-13 4.5E-18 102.1 8.5 98 58-156 57-166 (220)
25 1ozn_A Reticulon 4 receptor; N 99.5 2.1E-13 7.2E-18 104.2 9.4 109 59-168 57-184 (285)
26 3v47_A TOLL-like receptor 5B a 99.5 1.3E-13 4.4E-18 111.5 8.4 110 59-169 276-403 (455)
27 2z80_A TOLL-like receptor 2, v 99.5 7.4E-14 2.5E-18 109.8 6.6 124 42-168 25-181 (353)
28 3rfs_A Internalin B, repeat mo 99.5 2E-13 6.7E-18 104.0 8.6 97 59-156 86-194 (272)
29 2z62_A TOLL-like receptor 4, v 99.4 4.4E-13 1.5E-17 101.9 10.0 97 59-156 53-162 (276)
30 1w8a_A SLIT protein; signaling 99.4 3E-13 1E-17 98.1 8.6 106 61-170 11-135 (192)
31 2id5_A Lingo-1, leucine rich r 99.4 3.6E-13 1.2E-17 109.7 10.0 109 59-168 33-159 (477)
32 4fcg_A Uncharacterized protein 99.4 1.9E-13 6.6E-18 106.9 7.1 100 59-161 184-295 (328)
33 4b8c_D Glucose-repressible alc 99.4 8.1E-14 2.8E-18 119.6 5.1 89 78-169 219-324 (727)
34 1ozn_A Reticulon 4 receptor; N 99.4 4E-13 1.4E-17 102.6 8.3 109 59-168 106-232 (285)
35 2ell_A Acidic leucine-rich nuc 99.4 1.8E-13 6.1E-18 96.8 5.7 94 59-168 50-154 (168)
36 3oja_B Anopheles plasmodium-re 99.4 5E-13 1.7E-17 112.2 9.3 109 59-168 76-199 (597)
37 3j0a_A TOLL-like receptor 5; m 99.4 3.3E-13 1.1E-17 117.3 8.5 108 47-156 14-136 (844)
38 2v9t_B SLIT homolog 2 protein 99.4 5.5E-13 1.9E-17 98.7 8.4 98 58-156 56-165 (220)
39 3t6q_A CD180 antigen; protein- 99.4 4.3E-13 1.5E-17 112.1 8.7 110 59-169 34-161 (606)
40 3rfs_A Internalin B, repeat mo 99.4 3E-13 1E-17 102.9 7.0 110 58-169 109-230 (272)
41 2je0_A Acidic leucine-rich nuc 99.4 3.1E-13 1E-17 93.8 6.3 95 59-168 43-147 (149)
42 2o6s_A Variable lymphocyte rec 99.4 3.3E-13 1.1E-17 98.7 6.8 110 58-169 52-173 (208)
43 2z66_A Variable lymphocyte rec 99.4 7.5E-13 2.6E-17 102.0 8.8 97 59-156 127-236 (306)
44 2o6q_A Variable lymphocyte rec 99.4 1.2E-12 4.2E-17 99.4 8.8 97 59-156 86-194 (270)
45 1p9a_G Platelet glycoprotein I 99.4 1.5E-12 5.1E-17 100.2 9.1 66 104-169 109-180 (290)
46 2z66_A Variable lymphocyte rec 99.4 7.7E-13 2.6E-17 101.9 7.4 111 59-169 102-231 (306)
47 3vq2_A TLR4, TOLL-like recepto 99.4 8.8E-13 3E-17 110.2 8.2 97 59-156 425-534 (606)
48 1wwl_A Monocyte differentiatio 99.4 4E-13 1.4E-17 104.2 5.3 110 58-169 95-236 (312)
49 4eco_A Uncharacterized protein 99.4 1.9E-13 6.6E-18 115.6 3.7 109 58-168 206-360 (636)
50 2r9u_A Variable lymphocyte rec 99.4 1.7E-12 6E-17 92.8 8.2 84 59-156 34-118 (174)
51 3zyi_A Leucine-rich repeat-con 99.4 1.8E-12 6.1E-17 105.2 9.2 103 49-152 56-180 (452)
52 1ziw_A TOLL-like receptor 3; i 99.4 8.8E-13 3E-17 111.7 7.6 97 59-156 26-134 (680)
53 4ezg_A Putative uncharacterize 99.4 1.1E-12 3.9E-17 95.2 7.0 108 59-170 67-190 (197)
54 3oja_A Leucine-rich immune mol 99.4 1.3E-12 4.4E-17 107.4 8.1 119 47-169 109-245 (487)
55 1p9a_G Platelet glycoprotein I 99.4 2.5E-12 8.5E-17 99.0 8.7 108 59-168 78-202 (290)
56 1xku_A Decorin; proteoglycan, 99.3 2.5E-12 8.5E-17 100.1 8.7 57 46-103 30-96 (330)
57 3g39_A Variable lymphocyte rec 99.3 3E-12 1E-16 91.2 8.1 95 60-170 11-111 (170)
58 1dce_A Protein (RAB geranylger 99.3 1.1E-12 3.7E-17 109.8 6.7 92 60-157 443-547 (567)
59 2z62_A TOLL-like receptor 4, v 99.3 2.8E-12 9.7E-17 97.4 8.3 97 59-156 29-137 (276)
60 2xot_A Amphoterin-induced prot 99.3 3E-12 1E-16 101.2 8.3 97 58-156 64-176 (361)
61 3zyj_A Leucine-rich repeat-con 99.3 5.3E-12 1.8E-16 102.1 9.5 104 49-153 45-170 (440)
62 2r9u_A Variable lymphocyte rec 99.3 3.8E-12 1.3E-16 91.0 7.5 93 61-169 15-113 (174)
63 3e6j_A Variable lymphocyte rec 99.3 4.4E-12 1.5E-16 94.3 8.1 97 58-156 64-172 (229)
64 2ft3_A Biglycan; proteoglycan, 99.3 7.8E-12 2.7E-16 97.4 9.8 107 46-156 32-160 (332)
65 2z63_A TOLL-like receptor 4, v 99.3 4.8E-12 1.6E-16 104.8 9.0 97 59-156 53-162 (570)
66 3o6n_A APL1; leucine-rich repe 99.3 5.6E-12 1.9E-16 100.3 9.0 97 59-156 70-178 (390)
67 4ezg_A Putative uncharacterize 99.3 3.4E-12 1.2E-16 92.7 7.0 106 59-169 45-167 (197)
68 2id5_A Lingo-1, leucine rich r 99.3 3.3E-12 1.1E-16 104.0 7.7 109 59-168 57-183 (477)
69 2z63_A TOLL-like receptor 4, v 99.3 2.9E-12 1E-16 106.0 7.5 111 59-169 397-526 (570)
70 2ifg_A High affinity nerve gro 99.3 4.5E-12 1.5E-16 99.3 8.1 97 46-156 7-116 (347)
71 2xwt_C Thyrotropin receptor; s 99.3 6.6E-12 2.3E-16 93.5 8.6 107 59-168 32-163 (239)
72 3o6n_A APL1; leucine-rich repe 99.3 1.3E-12 4.6E-17 103.9 5.0 109 59-169 46-173 (390)
73 4ecn_A Leucine-rich repeat pro 99.3 6.9E-13 2.3E-17 115.8 3.5 110 58-169 448-603 (876)
74 4g8a_A TOLL-like receptor 4; l 99.3 5.2E-12 1.8E-16 105.3 8.6 100 59-159 77-189 (635)
75 2o6r_A Variable lymphocyte rec 99.3 1.2E-11 4.3E-16 88.0 8.9 105 61-169 10-132 (177)
76 3oja_A Leucine-rich immune mol 99.3 1.6E-12 5.6E-17 106.7 4.8 109 58-169 58-199 (487)
77 3a79_B TLR6, VLRB.59, TOLL-lik 99.3 5.8E-12 2E-16 104.7 8.0 107 58-168 52-176 (562)
78 3o53_A Protein LRIM1, AGAP0063 99.3 7.5E-12 2.6E-16 97.1 8.1 106 59-168 121-244 (317)
79 3zyi_A Leucine-rich repeat-con 99.3 7.7E-12 2.6E-16 101.5 8.4 39 118-156 217-255 (452)
80 4b8c_D Glucose-repressible alc 99.3 1.6E-12 5.3E-17 111.7 3.8 100 59-163 225-336 (727)
81 2z7x_B TOLL-like receptor 1, v 99.3 2.3E-12 7.9E-17 105.9 4.7 106 59-168 22-145 (520)
82 3zyj_A Leucine-rich repeat-con 99.3 9.2E-12 3.1E-16 100.7 8.1 40 117-156 205-244 (440)
83 2je0_A Acidic leucine-rich nuc 99.3 3.4E-12 1.2E-16 88.5 4.4 97 59-170 18-122 (149)
84 3t6q_A CD180 antigen; protein- 99.3 9.8E-12 3.3E-16 103.9 7.7 109 59-169 426-555 (606)
85 4glp_A Monocyte differentiatio 99.2 3.3E-12 1.1E-16 98.8 4.0 110 58-168 145-279 (310)
86 2z7x_B TOLL-like receptor 1, v 99.2 1.2E-11 4.3E-16 101.5 7.4 109 59-169 325-476 (520)
87 2wfh_A SLIT homolog 2 protein 99.2 2.1E-11 7.2E-16 88.5 7.5 78 58-136 54-143 (193)
88 1xku_A Decorin; proteoglycan, 99.2 2E-11 6.7E-16 95.0 7.7 107 60-168 147-270 (330)
89 1ziw_A TOLL-like receptor 3; i 99.2 9.2E-12 3.1E-16 105.4 5.8 110 59-169 50-179 (680)
90 1wwl_A Monocyte differentiatio 99.2 6.1E-12 2.1E-16 97.5 4.2 98 58-156 149-266 (312)
91 1a9n_A U2A', U2A'; complex (nu 99.2 1.3E-11 4.3E-16 88.1 5.4 94 59-168 43-147 (176)
92 4glp_A Monocyte differentiatio 99.2 8.1E-12 2.8E-16 96.6 4.7 110 59-169 92-232 (310)
93 2z81_A CD282 antigen, TOLL-lik 99.2 9E-12 3.1E-16 102.8 5.2 99 58-157 50-162 (549)
94 2ft3_A Biglycan; proteoglycan, 99.2 2.9E-11 9.8E-16 94.2 7.8 97 59-156 124-254 (332)
95 2ifg_A High affinity nerve gro 99.2 3E-11 1E-15 94.6 7.8 93 62-169 12-111 (347)
96 4ay9_X Follicle-stimulating ho 99.2 2.7E-11 9.2E-16 95.3 7.2 103 47-150 9-135 (350)
97 3a79_B TLR6, VLRB.59, TOLL-lik 99.2 2.8E-11 9.6E-16 100.6 7.7 109 59-169 354-505 (562)
98 2z80_A TOLL-like receptor 2, v 99.2 1.7E-11 5.9E-16 96.2 5.7 97 58-156 76-187 (353)
99 3cvr_A Invasion plasmid antige 99.2 8.4E-12 2.9E-16 104.5 3.8 114 42-169 38-168 (571)
100 2xwt_C Thyrotropin receptor; s 99.2 3.1E-11 1.1E-15 89.9 6.4 95 59-156 56-169 (239)
101 3j0a_A TOLL-like receptor 5; m 99.2 5.6E-11 1.9E-15 103.4 8.7 109 59-168 267-388 (844)
102 3o53_A Protein LRIM1, AGAP0063 99.2 9.4E-12 3.2E-16 96.6 2.9 108 58-168 58-198 (317)
103 2ell_A Acidic leucine-rich nuc 99.2 5.4E-11 1.8E-15 83.9 6.3 87 58-156 71-160 (168)
104 1a9n_A U2A', U2A'; complex (nu 99.1 7.1E-11 2.4E-15 84.1 6.2 94 59-169 20-121 (176)
105 3oja_B Anopheles plasmodium-re 99.1 4.4E-11 1.5E-15 100.3 5.8 110 59-169 52-179 (597)
106 1xeu_A Internalin C; cellular 99.1 1.9E-10 6.4E-15 87.2 7.0 105 58-169 63-180 (263)
107 1h6t_A Internalin B; cell adhe 99.1 1.9E-10 6.6E-15 88.4 6.1 61 104-168 143-207 (291)
108 1h6t_A Internalin B; cell adhe 99.0 4.4E-10 1.5E-14 86.3 7.8 103 58-169 68-186 (291)
109 1xeu_A Internalin C; cellular 99.0 4.1E-10 1.4E-14 85.3 7.5 105 58-170 41-159 (263)
110 4fmz_A Internalin; leucine ric 99.0 3.7E-10 1.3E-14 88.1 7.3 107 59-171 222-343 (347)
111 1h6u_A Internalin H; cell adhe 99.0 3.9E-10 1.3E-14 87.2 7.1 40 115-156 147-186 (308)
112 1jl5_A Outer protein YOPM; leu 99.0 6.1E-10 2.1E-14 90.7 8.3 103 59-168 132-264 (454)
113 2ast_B S-phase kinase-associat 99.0 7.3E-11 2.5E-15 91.7 2.6 96 59-156 71-182 (336)
114 1m9s_A Internalin B; cell inva 99.0 4.9E-10 1.7E-14 94.4 7.6 102 59-168 88-204 (605)
115 1h6u_A Internalin H; cell adhe 99.0 3.4E-10 1.1E-14 87.6 6.1 104 59-169 108-225 (308)
116 1jl5_A Outer protein YOPM; leu 98.9 6.4E-10 2.2E-14 90.6 5.4 81 83-168 317-423 (454)
117 3bz5_A Internalin-J, INLJ; leu 98.9 1.8E-09 6.2E-14 88.0 7.6 100 59-168 65-177 (457)
118 1ds9_A Outer arm dynein; leuci 98.9 2E-11 6.9E-16 88.6 -3.6 92 58-156 48-153 (198)
119 1m9s_A Internalin B; cell inva 98.9 1.8E-09 6.1E-14 91.0 7.5 103 58-169 65-183 (605)
120 2ast_B S-phase kinase-associat 98.9 4.3E-11 1.5E-15 93.0 -2.6 120 45-169 35-176 (336)
121 3bz5_A Internalin-J, INLJ; leu 98.9 1.5E-09 5.1E-14 88.5 6.3 37 59-99 213-249 (457)
122 1o6v_A Internalin A; bacterial 98.9 1.9E-09 6.7E-14 87.6 6.8 17 140-156 350-366 (466)
123 3cvr_A Invasion plasmid antige 98.9 1.3E-09 4.6E-14 91.2 5.9 41 122-163 210-250 (571)
124 1o6v_A Internalin A; bacterial 98.9 3E-09 1E-13 86.5 6.8 39 116-156 306-344 (466)
125 1ds9_A Outer arm dynein; leuci 98.9 2.3E-11 7.8E-16 88.3 -5.2 104 60-169 20-148 (198)
126 1dce_A Protein (RAB geranylger 98.9 2.6E-09 8.8E-14 89.4 6.0 89 58-150 463-567 (567)
127 4fmz_A Internalin; leucine ric 98.9 2.3E-09 7.7E-14 83.6 5.2 93 58-156 243-346 (347)
128 2ca6_A RAN GTPase-activating p 98.8 3.7E-10 1.3E-14 89.7 -0.4 46 111-156 236-287 (386)
129 2ca6_A RAN GTPase-activating p 98.8 9E-10 3.1E-14 87.4 1.9 35 59-94 33-71 (386)
130 3goz_A Leucine-rich repeat-con 98.8 7E-10 2.4E-14 87.5 1.1 97 59-156 52-180 (362)
131 3g06_A SSPH2 (leucine-rich rep 98.8 9.5E-10 3.2E-14 93.0 1.9 115 42-169 17-149 (622)
132 3g06_A SSPH2 (leucine-rich rep 98.8 9.7E-09 3.3E-13 86.8 6.4 76 83-164 221-305 (622)
133 3goz_A Leucine-rich repeat-con 98.7 1.7E-09 5.8E-14 85.3 1.2 110 59-169 23-175 (362)
134 1z7x_W Ribonuclease inhibitor; 98.6 1.6E-09 5.5E-14 87.4 -3.0 16 81-96 282-297 (461)
135 4ay9_X Follicle-stimulating ho 98.6 6.5E-08 2.2E-12 75.9 6.1 91 63-156 85-215 (350)
136 1z7x_W Ribonuclease inhibitor; 98.5 6.1E-09 2.1E-13 84.0 -0.8 38 59-97 86-127 (461)
137 3rw6_A Nuclear RNA export fact 98.4 2.5E-07 8.5E-12 70.4 3.8 65 81-157 168-234 (267)
138 3un9_A NLR family member X1; l 98.3 7.4E-08 2.5E-12 76.6 0.4 43 114-156 178-224 (372)
139 3un9_A NLR family member X1; l 98.3 3.8E-08 1.3E-12 78.2 -2.7 103 59-170 102-220 (372)
140 3rw6_A Nuclear RNA export fact 98.2 4.8E-07 1.6E-11 68.8 3.2 78 59-149 171-257 (267)
141 3sb4_A Hypothetical leucine ri 98.2 2.1E-06 7.1E-11 66.6 6.2 95 58-167 226-327 (329)
142 1io0_A Tropomodulin; LRR prote 98.0 4.4E-07 1.5E-11 65.1 -0.7 89 59-156 37-136 (185)
143 3ogk_B Coronatine-insensitive 98.0 2.1E-07 7.1E-12 77.3 -3.5 41 116-156 485-526 (592)
144 3ogk_B Coronatine-insensitive 97.7 1E-05 3.6E-10 67.0 2.5 18 80-97 217-234 (592)
145 2p1m_B Transport inhibitor res 97.7 4E-06 1.4E-10 69.4 -0.2 84 59-154 106-195 (594)
146 3sb4_A Hypothetical leucine ri 97.6 0.00014 4.8E-09 56.2 7.0 37 58-96 101-137 (329)
147 3e4g_A ATP synthase subunit S, 97.6 2.8E-05 9.6E-10 55.4 2.5 85 59-156 62-153 (176)
148 2p1m_B Transport inhibitor res 97.6 5.9E-06 2E-10 68.5 -1.6 52 118-169 455-514 (594)
149 1io0_A Tropomodulin; LRR prote 97.4 3.5E-05 1.2E-09 55.0 1.3 83 78-168 31-128 (185)
150 2ra8_A Uncharacterized protein 97.1 0.0001 3.5E-09 58.3 1.2 53 117-169 250-315 (362)
151 3e4g_A ATP synthase subunit S, 97.0 0.0008 2.7E-08 47.8 4.3 75 83-169 61-147 (176)
152 4fdw_A Leucine rich hypothetic 96.8 0.0034 1.2E-07 50.1 7.4 39 113-151 265-308 (401)
153 2ra8_A Uncharacterized protein 96.8 0.00025 8.6E-09 56.0 0.7 48 117-164 277-328 (362)
154 3rfe_A Platelet glycoprotein I 96.6 0.0018 6.1E-08 43.6 3.6 55 62-132 12-68 (130)
155 4fdw_A Leucine rich hypothetic 96.4 0.01 3.4E-07 47.3 7.2 94 59-156 249-358 (401)
156 3rfe_A Platelet glycoprotein I 95.6 0.018 6.3E-07 38.5 4.9 37 120-156 32-68 (130)
157 1pgv_A TMD-1, tropomodulin TMD 95.3 0.0056 1.9E-07 44.2 1.5 87 58-153 41-136 (197)
158 4gt6_A Cell surface protein; l 94.6 0.092 3.1E-06 41.3 6.9 55 113-168 328-385 (394)
159 1pgv_A TMD-1, tropomodulin TMD 93.8 0.0098 3.3E-07 42.9 -0.2 90 58-156 70-170 (197)
160 4h09_A Hypothetical leucine ri 93.6 0.28 9.5E-06 38.1 7.8 37 115-151 282-318 (379)
161 4fs7_A Uncharacterized protein 91.2 0.42 1.4E-05 37.4 6.0 40 113-153 337-376 (394)
162 4h09_A Hypothetical leucine ri 91.2 0.67 2.3E-05 35.9 7.1 62 78-153 281-343 (379)
163 4gt6_A Cell surface protein; l 90.5 0.98 3.4E-05 35.3 7.6 55 113-168 305-364 (394)
164 4fs7_A Uncharacterized protein 89.4 1.5 5.2E-05 34.2 7.8 54 113-168 314-373 (394)
165 3ox7_P MH027; urokinase-type p 40.9 8.9 0.0003 16.7 0.6 10 44-53 5-14 (23)
166 2lz0_A Uncharacterized protein 27.6 78 0.0027 19.4 3.8 42 74-129 11-53 (100)
No 1
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.93 E-value=2e-25 Score=174.06 Aligned_cols=154 Identities=25% Similarity=0.414 Sum_probs=132.1
Q ss_pred CCChHHHHHHHHHHHhcccCCCCCCCCCCCccCCCCCCCCCc--ccceeeCCC---CCEEEEEcCCCccce--ecCCCCC
Q 047948 7 SNSIEEGHALVKWKASLKVHSRSLLHSWFLSSVNVTKISPCA--WSGIHCNHA---GRVVGINLTSMSLNG--TLLEFPF 79 (171)
Q Consensus 7 ~~~~~~~~~l~~~~~~l~~~~~~~~~~W~~~~~~~~~~~~c~--w~gv~c~~~---~~v~~L~l~~~~l~~--~~p~~~l 79 (171)
.|.+.|++||++||+.+.+ +. .+.+|. .+.+||. |.||+|+.. ++|+.|+++++.+.+ .+|. .+
T Consensus 2 ~c~~~~~~aL~~~k~~~~~-~~-~l~~W~------~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~-~l 72 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLGN-PT-TLSSWL------PTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPS-SL 72 (313)
T ss_dssp CSCHHHHHHHHHHHHHTTC-CG-GGTTCC------TTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCG-GG
T ss_pred CCCHHHHHHHHHHHHhcCC-cc-cccCCC------CCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccCh-hH
Confidence 5788999999999999965 44 688997 5678998 999999864 799999999999998 8898 99
Q ss_pred CCCCCCcEEEeec-Ccccccccccc------------cccccccCCccccCCcCCCEEecccCcccccCChhhhCccccC
Q 047948 80 SSFPHLAYLVLYN-NELFYIILPQI------------TNKLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQEVGQLTFLN 146 (171)
Q Consensus 80 ~~L~~L~~L~l~~-n~l~g~~p~~~------------~n~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~ 146 (171)
..++.|++|++++ |.+.+.+|..+ .|++++.+|..+..+++|++|++++|.+++.+|..+..+++|+
T Consensus 73 ~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 152 (313)
T 1ogq_A 73 ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLV 152 (313)
T ss_dssp GGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCC
T ss_pred hCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCC
Confidence 9999999999995 99999998876 6888888898899999999999999999988999999999999
Q ss_pred ceeccccccccccch-------hhhccccc
Q 047948 147 HLILDLIFLIFWMVQ-------SLVLLAIW 169 (171)
Q Consensus 147 ~L~Ls~N~l~~~~~~-------~L~~L~l~ 169 (171)
+|++++|++++.++. .|++|++.
T Consensus 153 ~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~ 182 (313)
T 1ogq_A 153 GITFDGNRISGAIPDSYGSFSKLFTSMTIS 182 (313)
T ss_dssp EEECCSSCCEEECCGGGGCCCTTCCEEECC
T ss_pred eEECcCCcccCcCCHHHhhhhhcCcEEECc
Confidence 999999988743332 56666653
No 2
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.90 E-value=6.3e-24 Score=179.75 Aligned_cols=82 Identities=22% Similarity=0.331 Sum_probs=70.2
Q ss_pred CCChHHHHHHHHHHHhcccCCCCCC-------CCCCCccCCCCCCCCCcc---cceeeCCCCCEEEEEcCCCccceecCC
Q 047948 7 SNSIEEGHALVKWKASLKVHSRSLL-------HSWFLSSVNVTKISPCAW---SGIHCNHAGRVVGINLTSMSLNGTLLE 76 (171)
Q Consensus 7 ~~~~~~~~~l~~~~~~l~~~~~~~~-------~~W~~~~~~~~~~~~c~w---~gv~c~~~~~v~~L~l~~~~l~~~~p~ 76 (171)
+....|+.||.+++.++.++.+... .+|+ .+.++|.| .||+|+..++|+.|+|+++++.|.+|+
T Consensus 26 ~~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~------~~~~~c~w~~~~GV~C~~~~~V~~L~L~~~~l~g~lp~ 99 (636)
T 4eco_A 26 AEYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWN------FNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPD 99 (636)
T ss_dssp CHHHHHHHHHHHHHHHTTGGGCCCCC------CCCC------CSSCGGGTTCCTTEEECTTCCEEEEECTTSCCEEEECG
T ss_pred hhHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCC------CCCCcccccCCCCeEEcCCCCEEEEEecCcccCCcCCh
Confidence 3444699999999999977444322 3787 56899999 999999889999999999999999999
Q ss_pred CCCCCCCCCcEEEeecCcc
Q 047948 77 FPFSSFPHLAYLVLYNNEL 95 (171)
Q Consensus 77 ~~l~~L~~L~~L~l~~n~l 95 (171)
++..|++|+.|++++|.+
T Consensus 100 -~l~~L~~L~~L~Ls~N~~ 117 (636)
T 4eco_A 100 -AIGQLTELEVLALGSHGE 117 (636)
T ss_dssp -GGGGCTTCCEEESCCGGG
T ss_pred -HHhcCccceEEECcCCcc
Confidence 999999999999999954
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.90 E-value=1.1e-23 Score=181.60 Aligned_cols=159 Identities=25% Similarity=0.299 Sum_probs=122.7
Q ss_pred CccccCCCChHHHHHHHHHHHhcccCCCCCCCCCCCccCCCCCCCCCcccceeeCCCCCEEEEEcCCCcccee---cC--
Q 047948 1 FSLDVSSNSIEEGHALVKWKASLKVHSRSLLHSWFLSSVNVTKISPCAWSGIHCNHAGRVVGINLTSMSLNGT---LL-- 75 (171)
Q Consensus 1 ~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~W~~~~~~~~~~~~c~w~gv~c~~~~~v~~L~l~~~~l~~~---~p-- 75 (171)
|+.+++++.+.|+.||++||+.+.+ |. .+++|. .+.+||.|.||+|+ .++|+.|+|+++.+.|. ++
T Consensus 2 ~~~~~~~~~~~~~~all~~k~~~~~-~~-~l~~W~------~~~~~C~w~gv~C~-~~~v~~L~L~~~~l~g~~~~l~~~ 72 (768)
T 3rgz_A 2 FQASPSQSLYREIHQLISFKDVLPD-KN-LLPDWS------SNKNPCTFDGVTCR-DDKVTSIDLSSKPLNVGFSAVSSS 72 (768)
T ss_dssp ------CCHHHHHHHHHHHHTTCSC-TT-SSTTCC------TTSCGGGSTTEEEE-TTEEEEEECTTSCCCEEHHHHHHH
T ss_pred CcCccccCCHHHHHHHHHHHhhCCC-cc-cccCCC------CCCCCcCCcceEEC-CCcEEEEECCCCCcCCccCccChh
Confidence 4566677778899999999999985 66 789997 56799999999998 68999999999998876 43
Q ss_pred ---------------------CCCCCCCCCCcEEEeecCcccccccc--cc------------cccccccCCccc-cCCc
Q 047948 76 ---------------------EFPFSSFPHLAYLVLYNNELFYIILP--QI------------TNKLSGQIPSEI-GLLT 119 (171)
Q Consensus 76 ---------------------~~~l~~L~~L~~L~l~~n~l~g~~p~--~~------------~n~l~g~~p~~~-~~l~ 119 (171)
. .+..+++|++|++++|.+.|.+|. .+ +|.+.+.+|..+ ..++
T Consensus 73 l~~L~~L~~l~~~~~~~~~l~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~ 151 (768)
T 3rgz_A 73 LLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLN 151 (768)
T ss_dssp TTTCTTCCEEECTTSCEEECCC-CCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCT
T ss_pred HhccCcccccCCcCCCcCCCch-hhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCC
Confidence 4 678888999999999999888877 44 678888877765 7888
Q ss_pred CCCEEecccCcccccCChh---hhCccccCceeccccccc----cccchhhhccccc
Q 047948 120 HLTVLHISRNQLNGSIPQE---VGQLTFLNHLILDLIFLI----FWMVQSLVLLAIW 169 (171)
Q Consensus 120 ~L~~L~ls~N~l~g~~P~~---~~~l~~L~~L~Ls~N~l~----~~~~~~L~~L~l~ 169 (171)
+|++|++++|++++..|.. +.++++|++|++++|.++ ...+++|++|++.
T Consensus 152 ~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls 208 (768)
T 3rgz_A 152 SLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVS 208 (768)
T ss_dssp TCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECC
T ss_pred CCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEEECc
Confidence 8888888888888777766 667777777777777766 2344566666653
No 4
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.87 E-value=1.8e-22 Score=175.94 Aligned_cols=86 Identities=20% Similarity=0.327 Sum_probs=69.7
Q ss_pred cCCCChHHHHHHHHHHHhcccCCCCCCCCCCCccCCCCCCCC--Ccc------------cceeeCCCCCEEEEEcCCCcc
Q 047948 5 VSSNSIEEGHALVKWKASLKVHSRSLLHSWFLSSVNVTKISP--CAW------------SGIHCNHAGRVVGINLTSMSL 70 (171)
Q Consensus 5 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~~W~~~~~~~~~~~~--c~w------------~gv~c~~~~~v~~L~l~~~~l 70 (171)
.++....|+.||++||+++.+ + +|...... ...+| |.| .||+|+..++|+.|+|+++++
T Consensus 263 ~~~~~~~d~~ALl~~k~~l~~-~-----~W~~~~~~-~~~~~~~C~W~~~~~~~~w~~~~GV~C~~~~~V~~L~Ls~~~L 335 (876)
T 4ecn_A 263 ETAEYIKDYKALKAIWEALDG-K-----NWRYYSGT-INNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGA 335 (876)
T ss_dssp CCCHHHHHHHHHHHHHHHTTG-G-----GCCCCCSS-CSSCCCCCSCCCSSCGGGTTCCTTEEECTTSCEEEEECTTTCC
T ss_pred ccccchHHHHHHHHHHHHcCC-C-----CCCcCCCc-ccccCCccccccccccccccCcCceEecCCCCEEEEECccCCC
Confidence 344456799999999999976 2 78621000 01355 999 999999888999999999999
Q ss_pred ceecCCCCCCCCCCCcEEEe-ecCccccc
Q 047948 71 NGTLLEFPFSSFPHLAYLVL-YNNELFYI 98 (171)
Q Consensus 71 ~~~~p~~~l~~L~~L~~L~l-~~n~l~g~ 98 (171)
.|.+|+ ++..|+.|+.|++ ++|.+.|.
T Consensus 336 ~G~ip~-~l~~L~~L~~LdLss~N~lsG~ 363 (876)
T 4ecn_A 336 KGRVPD-AIGQLTELKVLSFGTHSETVSG 363 (876)
T ss_dssp EEEECG-GGGGCTTCCEEESCCTTHHHHT
T ss_pred CCcCch-HHhccccceEeeeccccccccc
Confidence 999999 9999999999999 88888776
No 5
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.80 E-value=1.9e-20 Score=146.86 Aligned_cols=146 Identities=18% Similarity=0.218 Sum_probs=94.1
Q ss_pred cCCCChHHHHHHHHHHHhcccCCCCCCCCCCCccCCCCCCCCCcccceeeCC---------CCCEEEEEcCCCccceecC
Q 047948 5 VSSNSIEEGHALVKWKASLKVHSRSLLHSWFLSSVNVTKISPCAWSGIHCNH---------AGRVVGINLTSMSLNGTLL 75 (171)
Q Consensus 5 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~~W~~~~~~~~~~~~c~w~gv~c~~---------~~~v~~L~l~~~~l~~~~p 75 (171)
..+....|+.||++||..+..++.+....|... .....++|.|.|+.|.. ..+|+.|++++|.++ .+|
T Consensus 21 ~~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~--~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp 97 (328)
T 4fcg_A 21 GSTALRPYHDVLSQWQRHYNADRNRWHSAWRQA--NSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFP 97 (328)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHH--TTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCC
T ss_pred ccccCchHHHHHHHHHHhccCCchhhhhhhccc--ccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcC
Confidence 445566799999999998865565666778310 01467899999999942 247888888888877 666
Q ss_pred CCCCCCCCCCcEEEeecCcccccccccc------------cccccccCCccccCCcCCCEEecccCcccccCChhhhC--
Q 047948 76 EFPFSSFPHLAYLVLYNNELFYIILPQI------------TNKLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQEVGQ-- 141 (171)
Q Consensus 76 ~~~l~~L~~L~~L~l~~n~l~g~~p~~~------------~n~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~-- 141 (171)
. .+..++.|++|++++|.+. .+|..+ +|.+. .+|..++.+++|++|++++|++.+.+|..++.
T Consensus 98 ~-~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~ 174 (328)
T 4fcg_A 98 D-QAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTD 174 (328)
T ss_dssp S-CGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC
T ss_pred h-hhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhcc
Confidence 6 6777777777777777777 566544 45555 45555555556666666555555555554432
Q ss_pred -------ccccCceeccccccc
Q 047948 142 -------LTFLNHLILDLIFLI 156 (171)
Q Consensus 142 -------l~~L~~L~Ls~N~l~ 156 (171)
+++|++|++++|+++
T Consensus 175 ~~~~~~~l~~L~~L~L~~n~l~ 196 (328)
T 4fcg_A 175 ASGEHQGLVNLQSLRLEWTGIR 196 (328)
T ss_dssp -CCCEEESTTCCEEEEEEECCC
T ss_pred chhhhccCCCCCEEECcCCCcC
Confidence 445555555555443
No 6
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.72 E-value=2.5e-17 Score=122.91 Aligned_cols=126 Identities=25% Similarity=0.289 Sum_probs=106.1
Q ss_pred CCCCCCcccceeeCCCC----------CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc--------
Q 047948 42 TKISPCAWSGIHCNHAG----------RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI-------- 103 (171)
Q Consensus 42 ~~~~~c~w~gv~c~~~~----------~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~-------- 103 (171)
.+...|.|.+|.|...+ +++.|+|++|.+++..+. .|..++.|+.|++++|.+....+..+
T Consensus 14 ~~~~~Cs~~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~ 92 (229)
T 3e6j_A 14 PSQCSCSGTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPG-VFDSLINLKELYLGSNQLGALPVGVFDSLTQLTV 92 (229)
T ss_dssp CTTCEEETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCCCEEeCCEeEccCCCcCccCCCCCCCCCEEEcCCCccCccCHH-HhhCccCCcEEECCCCCCCCcChhhcccCCCcCE
Confidence 46789999999997532 689999999999987777 89999999999999999975544433
Q ss_pred ----cccccccCCccccCCcCCCEEecccCcccccCChhhhCccccCceeccccccc------cccchhhhccccc
Q 047948 104 ----TNKLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQEVGQLTFLNHLILDLIFLI------FWMVQSLVLLAIW 169 (171)
Q Consensus 104 ----~n~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~------~~~~~~L~~L~l~ 169 (171)
+|++++..+..+..+++|+.|++++|+++ .+|..+..+++|++|+|++|+++ +..+++|+.|++.
T Consensus 93 L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 167 (229)
T 3e6j_A 93 LDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLF 167 (229)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECT
T ss_pred EECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEee
Confidence 78888766667889999999999999999 89999999999999999999988 3445677777774
No 7
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.66 E-value=4e-16 Score=115.69 Aligned_cols=123 Identities=21% Similarity=0.220 Sum_probs=100.2
Q ss_pred CCcccceeeCCCC----------CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc------------
Q 047948 46 PCAWSGIHCNHAG----------RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI------------ 103 (171)
Q Consensus 46 ~c~w~gv~c~~~~----------~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~------------ 103 (171)
.|.|..|.|...+ .++.|++++|.+++..+. .|..++.|+.|++++|.+++..|..+
T Consensus 10 ~C~~~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~i~~~-~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls 88 (220)
T 2v9t_B 10 TCSNNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPG-AFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLY 88 (220)
T ss_dssp EEETTEEECTTSCCSSCCSSCCTTCCEEECCSSCCCEECTT-SSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECC
T ss_pred EECCCEEEcCCCCcCcCCCccCcCCCEEECCCCcCCCcCHh-HhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECC
Confidence 4578888886432 689999999999966665 78999999999999999998777666
Q ss_pred cccccccCCccccCCcCCCEEecccCcccccCChhhhCccccCceeccccccc------cccchhhhccccc
Q 047948 104 TNKLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQEVGQLTFLNHLILDLIFLI------FWMVQSLVLLAIW 169 (171)
Q Consensus 104 ~n~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~------~~~~~~L~~L~l~ 169 (171)
+|+++...+..+..+++|+.|++++|++++..|..|..+++|++|+|++|+++ +..+++|+.|++.
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 160 (220)
T 2v9t_B 89 GNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLA 160 (220)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred CCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeC
Confidence 68887555555788999999999999999888888999999999999999987 3345677777774
No 8
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.65 E-value=4.4e-16 Score=114.05 Aligned_cols=124 Identities=25% Similarity=0.243 Sum_probs=94.4
Q ss_pred CCCcccceeeCCCC----------CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc-----------
Q 047948 45 SPCAWSGIHCNHAG----------RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI----------- 103 (171)
Q Consensus 45 ~~c~w~gv~c~~~~----------~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~----------- 103 (171)
-.|.|.+|.|...+ ++++|++++|.+++..+. .+..++.|++|++++|++++..+..+
T Consensus 5 C~C~~~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 83 (208)
T 2o6s_A 5 CSCSGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNG-VFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNL 83 (208)
T ss_dssp CEEETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTT-TTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CEECCCEEEecCCCccCCCCCCCCCCcEEEcCCCccCcCChh-hhcccccCcEEECCCCccCccChhhcCCCCCcCEEEC
Confidence 34789999997532 689999999999855444 67889999999999999886554333
Q ss_pred -cccccccCCccccCCcCCCEEecccCcccccCChhhhCccccCceeccccccc------cccchhhhccccc
Q 047948 104 -TNKLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQEVGQLTFLNHLILDLIFLI------FWMVQSLVLLAIW 169 (171)
Q Consensus 104 -~n~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~------~~~~~~L~~L~l~ 169 (171)
.|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|+++ +..+++|+.|++.
T Consensus 84 s~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 156 (208)
T 2o6s_A 84 STNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLH 156 (208)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred CCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEec
Confidence 67777655556788888899999888888655556788888888888888887 2345677777764
No 9
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.64 E-value=6.4e-16 Score=114.61 Aligned_cols=124 Identities=18% Similarity=0.165 Sum_probs=89.8
Q ss_pred CCcccceeeCCCC----------CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc------------
Q 047948 46 PCAWSGIHCNHAG----------RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI------------ 103 (171)
Q Consensus 46 ~c~w~gv~c~~~~----------~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~------------ 103 (171)
.|.|..+.|.... .++.|++++|.+++..+...|..++.|+.|++++|.+++..+..+
T Consensus 10 ~C~~~~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 10 RCEGTTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp EEETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred EECCCEeEeCCCCcccCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence 3567777775321 567888888888866554246788888888888888887665444
Q ss_pred cccccccCCccccCCcCCCEEecccCcccccCChhhhCccccCceeccccccc------cccchhhhccccc
Q 047948 104 TNKLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQEVGQLTFLNHLILDLIFLI------FWMVQSLVLLAIW 169 (171)
Q Consensus 104 ~n~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~------~~~~~~L~~L~l~ 169 (171)
+|++++..|..+..+++|++|++++|++++..|..|..+++|++|+|++|+++ +..+++|+.|++.
T Consensus 90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 161 (220)
T 2v70_A 90 SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLL 161 (220)
T ss_dssp SSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEec
Confidence 67777766667788888888888888888777777888888888888888877 2335566666663
No 10
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.60 E-value=1.2e-15 Score=115.01 Aligned_cols=109 Identities=26% Similarity=0.236 Sum_probs=56.1
Q ss_pred CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc------------cccccccCCccccCCcCCCEEec
Q 047948 59 RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI------------TNKLSGQIPSEIGLLTHLTVLHI 126 (171)
Q Consensus 59 ~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~------------~n~l~g~~p~~~~~l~~L~~L~l 126 (171)
++++|++++|.+++..+. .|..++.|+.|++++|.+++..+..+ +|++++..+..+..+++|++|++
T Consensus 60 ~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 138 (251)
T 3m19_A 60 KLTWLNLDYNQLQTLSAG-VFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRL 138 (251)
T ss_dssp TCCEEECTTSCCCCCCTT-TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cCCEEECCCCcCCccCHh-HhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEEC
Confidence 344555555554443333 44455555555555555543333222 45555444444555666666666
Q ss_pred ccCcccccCChhhhCccccCceeccccccc------cccchhhhcccc
Q 047948 127 SRNQLNGSIPQEVGQLTFLNHLILDLIFLI------FWMVQSLVLLAI 168 (171)
Q Consensus 127 s~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~------~~~~~~L~~L~l 168 (171)
++|++++..|..+..+++|++|+|++|+++ +..+++|+.|++
T Consensus 139 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 186 (251)
T 3m19_A 139 NTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITL 186 (251)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred cCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEe
Confidence 666666444445666666666666666665 222345555555
No 11
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.60 E-value=2.1e-15 Score=114.80 Aligned_cols=97 Identities=27% Similarity=0.255 Sum_probs=55.8
Q ss_pred CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc------------cccccccCCccccCCcCCCEEec
Q 047948 59 RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI------------TNKLSGQIPSEIGLLTHLTVLHI 126 (171)
Q Consensus 59 ~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~------------~n~l~g~~p~~~~~l~~L~~L~l 126 (171)
.++.|++++|.+++..+. .|..++.|++|++++|.++...+..+ .|++.+..+..+..+++|++|++
T Consensus 38 ~l~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 116 (270)
T 2o6q_A 38 DTKKLDLQSNKLSSLPSK-AFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRL 116 (270)
T ss_dssp TCSEEECCSSCCSCCCTT-SSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEEC
T ss_pred CCCEEECcCCCCCeeCHH-HhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEEC
Confidence 467777777777654444 67777777777777777764333222 45555443344455555555555
Q ss_pred ccCcccccCChhhhCccccCceeccccccc
Q 047948 127 SRNQLNGSIPQEVGQLTFLNHLILDLIFLI 156 (171)
Q Consensus 127 s~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~ 156 (171)
++|++++..|..|..+++|++|++++|+++
T Consensus 117 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 146 (270)
T 2o6q_A 117 DRNQLKSLPPRVFDSLTKLTYLSLGYNELQ 146 (270)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CCCccCeeCHHHhCcCcCCCEEECCCCcCC
Confidence 555555444444555555555555555544
No 12
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.60 E-value=2.2e-15 Score=109.39 Aligned_cols=111 Identities=23% Similarity=0.249 Sum_probs=91.4
Q ss_pred CCcccceeeCCCC----------CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc------------
Q 047948 46 PCAWSGIHCNHAG----------RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI------------ 103 (171)
Q Consensus 46 ~c~w~gv~c~~~~----------~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~------------ 103 (171)
.|.|..+.|...+ +++.|++++|.+++..+...+..++.|++|++++|.+++..|..+
T Consensus 7 ~C~~~~l~~s~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 7 HCEGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp EEETTEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred EECCCEEEcCCCCcCcCccCCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 3678778776422 789999999999855543137889999999999999998877665
Q ss_pred cccccccCCccccCCcCCCEEecccCcccccCChhhhCccccCceeccccccc
Q 047948 104 TNKLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQEVGQLTFLNHLILDLIFLI 156 (171)
Q Consensus 104 ~n~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~ 156 (171)
+|++++..|..+..+++|++|++++|++++..|..+..+++|++|++++|++.
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 78888877777888899999999999999888888888899999999999887
No 13
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.57 E-value=3.2e-15 Score=128.83 Aligned_cols=57 Identities=44% Similarity=0.521 Sum_probs=35.8
Q ss_pred cccccccCCccccCCcCCCEEecccCcccccCChhhhCccccCceeccccccccccc
Q 047948 104 TNKLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQEVGQLTFLNHLILDLIFLIFWMV 160 (171)
Q Consensus 104 ~n~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~~~~~ 160 (171)
+|+++|.+|..++.++.|+.|++++|+++|.+|..++++++|++|+|++|++++.++
T Consensus 641 ~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip 697 (768)
T 3rgz_A 641 YNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIP 697 (768)
T ss_dssp SSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCC
T ss_pred CCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCC
Confidence 455556666666666666666666666666666666666666666666666664443
No 14
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.55 E-value=1.8e-14 Score=102.98 Aligned_cols=111 Identities=24% Similarity=0.251 Sum_probs=84.1
Q ss_pred CCcccceeeCCCC----------CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc------------
Q 047948 46 PCAWSGIHCNHAG----------RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI------------ 103 (171)
Q Consensus 46 ~c~w~gv~c~~~~----------~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~------------ 103 (171)
.|.|.++.|...+ +++.|++++|.+++..+. .+..++.|++|++++|.+++..+..+
T Consensus 6 ~C~~~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 84 (177)
T 2o6r_A 6 SCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHG-VFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH 84 (177)
T ss_dssp EEETTEEECCSSCCSSCCTTCCTTCSEEECCSSCCCCCCTT-TTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred EeCCCEEEecCCCCccCCCCCCCCCcEEEeCCCcccEeCHH-HhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence 4679999986432 789999999999865555 68899999999999999986554433
Q ss_pred cccccccCCccccCCcCCCEEecccCcccccCChhhhCccccCceecccccccc
Q 047948 104 TNKLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQEVGQLTFLNHLILDLIFLIF 157 (171)
Q Consensus 104 ~n~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~~ 157 (171)
+|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|++.+
T Consensus 85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 85 ENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 677776655566778888888888888884444445677888888888888763
No 15
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.53 E-value=1.5e-14 Score=116.90 Aligned_cols=125 Identities=20% Similarity=0.228 Sum_probs=94.6
Q ss_pred CCCCcccc--eeeCCC---------CCEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccc-cc--------
Q 047948 44 ISPCAWSG--IHCNHA---------GRVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILP-QI-------- 103 (171)
Q Consensus 44 ~~~c~w~g--v~c~~~---------~~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~-~~-------- 103 (171)
...|.|.+ |.|... .++++|++++|.+++..|. .|..++.|++|++++|.+.+.++. .+
T Consensus 5 ~~~c~~~~~~~~c~~~~l~~lp~l~~~l~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~ 83 (455)
T 3v47_A 5 TSECSVIGYNAICINRGLHQVPELPAHVNYVDLSLNSIAELNET-SFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLII 83 (455)
T ss_dssp --CCEEETTEEECCSSCCSSCCCCCTTCCEEECCSSCCCEECTT-TTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCE
T ss_pred cceeEEEccccCcCCCCcccCCCCCCccCEEEecCCccCcCChh-HhccCccccEEECcCCcccceECcccccccccCCE
Confidence 44566655 777643 3689999999999877777 899999999999999988766643 23
Q ss_pred ----cccccccCCccccCCcCCCEEecccCcccccCChh--hhCccccCceecccccccc-------ccchhhhccccc
Q 047948 104 ----TNKLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQE--VGQLTFLNHLILDLIFLIF-------WMVQSLVLLAIW 169 (171)
Q Consensus 104 ----~n~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~--~~~l~~L~~L~Ls~N~l~~-------~~~~~L~~L~l~ 169 (171)
+|++.+..|..++.+++|++|++++|++++.+|.. +.++++|++|++++|+++. ..+++|++|++.
T Consensus 84 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~ 162 (455)
T 3v47_A 84 LKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLT 162 (455)
T ss_dssp EECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECT
T ss_pred EeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCC
Confidence 67788777888888888888888888888766655 7888888888888888772 235667777764
No 16
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.53 E-value=6.6e-15 Score=114.44 Aligned_cols=98 Identities=20% Similarity=0.331 Sum_probs=76.5
Q ss_pred CEEEEEcCC-CccceecCCCCCCCCCCCcEEEeecCcccccccccc------------cccccccCCccccCCcCCCEEe
Q 047948 59 RVVGINLTS-MSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI------------TNKLSGQIPSEIGLLTHLTVLH 125 (171)
Q Consensus 59 ~v~~L~l~~-~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~------------~n~l~g~~p~~~~~l~~L~~L~ 125 (171)
++++|++++ |.+.+.+|. .+..++.|++|++++|.+++.+|..+ +|.+.+.+|..+..+++|++|+
T Consensus 77 ~L~~L~L~~~n~l~~~~p~-~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 155 (313)
T 1ogq_A 77 YLNFLYIGGINNLVGPIPP-AIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGIT 155 (313)
T ss_dssp TCSEEEEEEETTEESCCCG-GGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEE
T ss_pred CCCeeeCCCCCcccccCCh-hHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEE
Confidence 678888884 888877877 78888888888888888887777665 6777777777777778888888
Q ss_pred cccCcccccCChhhhCcc-ccCceecccccccc
Q 047948 126 ISRNQLNGSIPQEVGQLT-FLNHLILDLIFLIF 157 (171)
Q Consensus 126 ls~N~l~g~~P~~~~~l~-~L~~L~Ls~N~l~~ 157 (171)
+++|+++|.+|..++.++ .|++|++++|++++
T Consensus 156 L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~ 188 (313)
T 1ogq_A 156 FDGNRISGAIPDSYGSFSKLFTSMTISRNRLTG 188 (313)
T ss_dssp CCSSCCEEECCGGGGCCCTTCCEEECCSSEEEE
T ss_pred CcCCcccCcCCHHHhhhhhcCcEEECcCCeeec
Confidence 888888777777777776 77777777777763
No 17
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.52 E-value=2.4e-14 Score=104.11 Aligned_cols=109 Identities=20% Similarity=0.283 Sum_probs=71.9
Q ss_pred CCcccceeeCCC----------CCEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc------------
Q 047948 46 PCAWSGIHCNHA----------GRVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI------------ 103 (171)
Q Consensus 46 ~c~w~gv~c~~~----------~~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~------------ 103 (171)
.|.+..+.|... ..++.|++++|.++ .+|. .|..++.|+.|++++|.+++..+..+
T Consensus 9 ~C~~~~l~~~~~~l~~ip~~~~~~l~~L~L~~n~i~-~ip~-~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls 86 (193)
T 2wfh_A 9 TCLDTVVRCSNKGLKVLPKGIPRDVTELYLDGNQFT-LVPK-ELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILS 86 (193)
T ss_dssp EEETTEEECTTSCCSSCCSCCCTTCCEEECCSSCCC-SCCG-GGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred EeCCCEEEcCCCCCCcCCCCCCCCCCEEECCCCcCc-hhHH-HhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECC
Confidence 355666777532 26899999999998 7776 89999999999999999986544333
Q ss_pred cccccccCCccccCCcCCCEEecccCcccccCChhhhCccccCceeccccccc
Q 047948 104 TNKLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQEVGQLTFLNHLILDLIFLI 156 (171)
Q Consensus 104 ~n~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~ 156 (171)
+|++++..|..|..+++|+.|++++|++++..+..|..+++|++|++++|++.
T Consensus 87 ~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 87 YNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp SSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 45555544455555566666666666665333334555555666666666554
No 18
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.52 E-value=1.3e-14 Score=119.96 Aligned_cols=121 Identities=22% Similarity=0.245 Sum_probs=89.4
Q ss_pred CCcccceeeCCC------------CCEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc----------
Q 047948 46 PCAWSGIHCNHA------------GRVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI---------- 103 (171)
Q Consensus 46 ~c~w~gv~c~~~------------~~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~---------- 103 (171)
.|.|.|+ |+.. .++++|++++|.+++..|. .|..++.|++|++++|++.+..|..+
T Consensus 3 ~C~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 80 (549)
T 2z81_A 3 SCDASGV-CDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHG-DLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLD 80 (549)
T ss_dssp EECTTSE-EECTTSCCSSCCSCCCTTCCEEECCSSCCCEECSS-TTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred cCCCCce-EECCCCccccccccCCCCccEEECcCCccCccChh-hhhcCCcccEEECCCCCcCccChhhccccccCCEEE
Confidence 4788887 7532 2689999999999877777 89999999999999999987766555
Q ss_pred --cccccccCCccccCCcCCCEEecccCcccc-cCChhhhCccccCceeccccccc-------cccchhhhcccc
Q 047948 104 --TNKLSGQIPSEIGLLTHLTVLHISRNQLNG-SIPQEVGQLTFLNHLILDLIFLI-------FWMVQSLVLLAI 168 (171)
Q Consensus 104 --~n~l~g~~p~~~~~l~~L~~L~ls~N~l~g-~~P~~~~~l~~L~~L~Ls~N~l~-------~~~~~~L~~L~l 168 (171)
+|++.+..|..++.+++|++|++++|.+++ ..|..++++++|++|++++|++. +..+++|++|++
T Consensus 81 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L 155 (549)
T 2z81_A 81 LSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEI 155 (549)
T ss_dssp CTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEE
T ss_pred CCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeec
Confidence 677776666667788888888888888775 35666777777777777777632 233455666655
No 19
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.51 E-value=3.2e-14 Score=118.65 Aligned_cols=110 Identities=21% Similarity=0.151 Sum_probs=91.3
Q ss_pred CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc------------cccccccCCccccCCcCCCEEec
Q 047948 59 RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI------------TNKLSGQIPSEIGLLTHLTVLHI 126 (171)
Q Consensus 59 ~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~------------~n~l~g~~p~~~~~l~~L~~L~l 126 (171)
.+++|+|++|.+++..+. .|..+++|++|++++|++++..|..| +|++++..+..|..+++|++|++
T Consensus 53 ~~~~LdLs~N~i~~l~~~-~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSY-SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp TCCEEECTTSCCCEECTT-TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred CCCEEEeeCCCCCCCCHH-HHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence 689999999999965555 89999999999999999997766655 68888766677899999999999
Q ss_pred ccCcccccCChhhhCccccCceeccccccc-------cccchhhhccccc
Q 047948 127 SRNQLNGSIPQEVGQLTFLNHLILDLIFLI-------FWMVQSLVLLAIW 169 (171)
Q Consensus 127 s~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~-------~~~~~~L~~L~l~ 169 (171)
++|++++..+..|+++++|++|++++|.++ ...+++|++|++.
T Consensus 132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~ 181 (635)
T 4g8a_A 132 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 181 (635)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECC
T ss_pred CCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhccc
Confidence 999999655567899999999999999886 2345677777764
No 20
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.51 E-value=5.2e-14 Score=105.94 Aligned_cols=110 Identities=25% Similarity=0.211 Sum_probs=68.9
Q ss_pred CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc------------cccccccCCccccCCcCCCEEec
Q 047948 59 RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI------------TNKLSGQIPSEIGLLTHLTVLHI 126 (171)
Q Consensus 59 ~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~------------~n~l~g~~p~~~~~l~~L~~L~l 126 (171)
.++.|++++|.+.+..+. .|..++.|++|++++|.+.+..+..+ +|++++..+..+..+++|++|++
T Consensus 36 ~l~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 114 (251)
T 3m19_A 36 DTEKLDLQSTGLATLSDA-TFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYL 114 (251)
T ss_dssp TCCEEECTTSCCCCCCTT-TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEEccCCCcCccCHh-HhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEc
Confidence 466677777776655555 56667777777777777666555433 56666555555666677777777
Q ss_pred ccCcccccCChhhhCccccCceeccccccc------cccchhhhccccc
Q 047948 127 SRNQLNGSIPQEVGQLTFLNHLILDLIFLI------FWMVQSLVLLAIW 169 (171)
Q Consensus 127 s~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~------~~~~~~L~~L~l~ 169 (171)
++|++++..+..+..+++|++|+|++|+++ +..+++|+.|++.
T Consensus 115 ~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 163 (251)
T 3m19_A 115 GGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLS 163 (251)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECC
Confidence 777777444444566677777777777665 2234556666653
No 21
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.49 E-value=7.1e-14 Score=110.61 Aligned_cols=123 Identities=20% Similarity=0.170 Sum_probs=91.0
Q ss_pred CCcccceeeCCCC----------CEEEEEcCCCccceecCCCCCC-CCCCCcEEEeecCcccccccccc-----------
Q 047948 46 PCAWSGIHCNHAG----------RVVGINLTSMSLNGTLLEFPFS-SFPHLAYLVLYNNELFYIILPQI----------- 103 (171)
Q Consensus 46 ~c~w~gv~c~~~~----------~v~~L~l~~~~l~~~~p~~~l~-~L~~L~~L~l~~n~l~g~~p~~~----------- 103 (171)
.|.+..+.|...+ .++.|+|++|.+++..+. .+. .+++|+.|++++|.+++..+..+
T Consensus 17 ~C~~~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~-~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L 95 (361)
T 2xot_A 17 LCASNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAE-WTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDL 95 (361)
T ss_dssp EEETTEEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTT-SSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred EECCCEEEeCCCCcCccCccCCCCCCEEECCCCCCCccChh-hhhhcccccCEEECCCCcCCccChhhccCCCCCCEEEC
Confidence 3467777775421 577889999988865555 666 88888888888888887665544
Q ss_pred -cccccccCCccccCCcCCCEEecccCcccccCChhhhCccccCceecccccccc---------ccchhhhccccc
Q 047948 104 -TNKLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQEVGQLTFLNHLILDLIFLIF---------WMVQSLVLLAIW 169 (171)
Q Consensus 104 -~n~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~~---------~~~~~L~~L~l~ 169 (171)
+|++.+..+..|..+++|+.|+|++|++++..|..|.++++|++|+|++|+|+. ..+++|+.|++.
T Consensus 96 s~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~ 171 (361)
T 2xot_A 96 SSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLS 171 (361)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECC
T ss_pred CCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECC
Confidence 677777666677888888888888888887777788888888888888888771 236677777764
No 22
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.49 E-value=7.4e-14 Score=99.55 Aligned_cols=98 Identities=22% Similarity=0.195 Sum_probs=81.4
Q ss_pred CCcccceeeCCC----------CCEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccccccccccCCccc
Q 047948 46 PCAWSGIHCNHA----------GRVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQITNKLSGQIPSEI 115 (171)
Q Consensus 46 ~c~w~gv~c~~~----------~~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~~n~l~g~~p~~~ 115 (171)
.|.|+.+.|... ..++.|+|++|.+++..+. .|..++.|++|++++|++++ ..+..|
T Consensus 8 ~C~~~~l~~s~n~l~~ip~~~~~~l~~L~L~~N~i~~~~~~-~~~~l~~L~~L~Ls~N~l~~------------l~~~~f 74 (170)
T 3g39_A 8 SCSGTTVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPG-VFDRLTQLTRLDLDNNQLTV------------LPAGVF 74 (170)
T ss_dssp EEETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTT-TTTTCTTCSEEECCSSCCCC------------CCTTTT
T ss_pred CcCCCEEEeCCCCcCccCccCCCCCcEEEcCCCcCCccChh-hhcCcccCCEEECCCCCcCc------------cChhhc
Confidence 356777777542 2688999999999977777 89999999999999998873 223456
Q ss_pred cCCcCCCEEecccCcccccCChhhhCccccCceeccccccc
Q 047948 116 GLLTHLTVLHISRNQLNGSIPQEVGQLTFLNHLILDLIFLI 156 (171)
Q Consensus 116 ~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~ 156 (171)
..+++|++|++++|++++..|..|..+++|++|+|++|++.
T Consensus 75 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 75 DKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 89999999999999999666667999999999999999987
No 23
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.48 E-value=9.2e-14 Score=116.16 Aligned_cols=97 Identities=25% Similarity=0.205 Sum_probs=63.8
Q ss_pred CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc------------cccccccCCccccCCcCCCEEec
Q 047948 59 RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI------------TNKLSGQIPSEIGLLTHLTVLHI 126 (171)
Q Consensus 59 ~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~------------~n~l~g~~p~~~~~l~~L~~L~l 126 (171)
++++|++++|.+++..+. .|..++.|++|++++|.+++..|..+ +|.+.+..|..|+.+++|++|++
T Consensus 33 ~l~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 111 (606)
T 3vq2_A 33 STKNIDLSFNPLKILKSY-SFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA 111 (606)
T ss_dssp TCCEEECTTSCCCEECTT-TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred CcCEEECCCCCcCEeChh-hccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEc
Confidence 577777777777765555 67777777777777777776655544 56666655666666666666666
Q ss_pred ccCcccccCChhhhCccccCceeccccccc
Q 047948 127 SRNQLNGSIPQEVGQLTFLNHLILDLIFLI 156 (171)
Q Consensus 127 s~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~ 156 (171)
++|.+++..|..++++++|++|++++|.+.
T Consensus 112 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 141 (606)
T 3vq2_A 112 VETKLASLESFPIGQLITLKKLNVAHNFIH 141 (606)
T ss_dssp TTSCCCCSSSSCCTTCTTCCEEECCSSCCC
T ss_pred cCCccccccccccCCCCCCCEEeCCCCccc
Confidence 666666444455666666666666666654
No 24
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.47 E-value=1.3e-13 Score=102.09 Aligned_cols=98 Identities=16% Similarity=0.134 Sum_probs=89.6
Q ss_pred CCEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc------------cccccccCCccccCCcCCCEEe
Q 047948 58 GRVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI------------TNKLSGQIPSEIGLLTHLTVLH 125 (171)
Q Consensus 58 ~~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~------------~n~l~g~~p~~~~~l~~L~~L~ 125 (171)
.+++.|++++|.+++..+. .|..++.|+.|++++|.+++..+..+ +|++.+..|..+..+++|++|+
T Consensus 57 ~~L~~L~L~~N~i~~i~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 135 (220)
T 2v70_A 57 PQLRKINFSNNKITDIEEG-AFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLS 135 (220)
T ss_dssp TTCCEEECCSSCCCEECTT-TTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEE
T ss_pred CCCCEEECCCCcCCEECHH-HhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEE
Confidence 4799999999999977666 89999999999999999998777655 7999988899999999999999
Q ss_pred cccCcccccCChhhhCccccCceeccccccc
Q 047948 126 ISRNQLNGSIPQEVGQLTFLNHLILDLIFLI 156 (171)
Q Consensus 126 ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~ 156 (171)
+++|++++..|..|..+++|++|++++|++.
T Consensus 136 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 136 LYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp CTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 9999999888999999999999999999997
No 25
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.47 E-value=2.1e-13 Score=104.18 Aligned_cols=109 Identities=23% Similarity=0.146 Sum_probs=59.2
Q ss_pred CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCc-ccccccccc------------cccccccCCccccCCcCCCEEe
Q 047948 59 RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNE-LFYIILPQI------------TNKLSGQIPSEIGLLTHLTVLH 125 (171)
Q Consensus 59 ~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~-l~g~~p~~~------------~n~l~g~~p~~~~~l~~L~~L~ 125 (171)
+++.|++++|.+++..+. .+..++.|++|++++|. +....|..+ +|.+.+..|..+..+++|++|+
T Consensus 57 ~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 135 (285)
T 1ozn_A 57 NLTILWLHSNVLARIDAA-AFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLY 135 (285)
T ss_dssp TCCEEECCSSCCCEECTT-TTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCEEECCCCccceeCHh-hcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEE
Confidence 455555555555544444 55555556666666554 433323322 4555555555556666666666
Q ss_pred cccCcccccCChhhhCccccCceeccccccc------cccchhhhcccc
Q 047948 126 ISRNQLNGSIPQEVGQLTFLNHLILDLIFLI------FWMVQSLVLLAI 168 (171)
Q Consensus 126 ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~------~~~~~~L~~L~l 168 (171)
+++|++++..+..+..+++|++|++++|+++ +..+++|+.|++
T Consensus 136 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 184 (285)
T 1ozn_A 136 LQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLL 184 (285)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEEC
Confidence 6666666444444556666666666666655 223445555555
No 26
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.46 E-value=1.3e-13 Score=111.50 Aligned_cols=110 Identities=27% Similarity=0.193 Sum_probs=76.6
Q ss_pred CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc------------cccccccCCccccCCcCCCEEec
Q 047948 59 RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI------------TNKLSGQIPSEIGLLTHLTVLHI 126 (171)
Q Consensus 59 ~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~------------~n~l~g~~p~~~~~l~~L~~L~l 126 (171)
.++.+++++|.+.+..+. .+..++.|+.|++++|.+.+..|..+ +|++.+..|..+..+++|++|++
T Consensus 276 ~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 354 (455)
T 3v47_A 276 GVKTCDLSKSKIFALLKS-VFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDL 354 (455)
T ss_dssp CCCEEECCSSCCCEECTT-TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEEC
T ss_pred CceEEEecCccccccchh-hcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEEC
Confidence 567777777777766666 67777777777777777776655444 56666666666777777777777
Q ss_pred ccCcccccCChhhhCccccCceeccccccc------cccchhhhccccc
Q 047948 127 SRNQLNGSIPQEVGQLTFLNHLILDLIFLI------FWMVQSLVLLAIW 169 (171)
Q Consensus 127 s~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~------~~~~~~L~~L~l~ 169 (171)
++|++++..|..+..+++|++|++++|+++ +..+++|++|++.
T Consensus 355 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 403 (455)
T 3v47_A 355 SYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLH 403 (455)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred CCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEcc
Confidence 777777666777777777777777777776 2345566666664
No 27
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.46 E-value=7.4e-14 Score=109.83 Aligned_cols=124 Identities=23% Similarity=0.216 Sum_probs=87.5
Q ss_pred CCCCCCcccceeeCCC------------CCEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc------
Q 047948 42 TKISPCAWSGIHCNHA------------GRVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI------ 103 (171)
Q Consensus 42 ~~~~~c~w~gv~c~~~------------~~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~------ 103 (171)
.....|.|.|+ |+.. .++++|++++|.+++..+. .+..++.|+.|++++|.+++..|..+
T Consensus 25 ~~~~~C~~~~~-c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 102 (353)
T 2z80_A 25 QASLSCDRNGI-CKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNS-DLQRCVNLQALVLTSNGINTIEEDSFSSLGSL 102 (353)
T ss_dssp --CCEECTTSE-EECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTT-TTTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred ccCCCCCCCeE-eeCCCCCcccccccccccCcEEECCCCcCcccCHH-HhccCCCCCEEECCCCccCccCHhhcCCCCCC
Confidence 45677899988 6532 2789999999999865555 78999999999999999987666544
Q ss_pred ------cccccccCCccccCCcCCCEEecccCcccccCCh--hhhCccccCceeccccc-cc------cccchhhhcccc
Q 047948 104 ------TNKLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQ--EVGQLTFLNHLILDLIF-LI------FWMVQSLVLLAI 168 (171)
Q Consensus 104 ------~n~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~--~~~~l~~L~~L~Ls~N~-l~------~~~~~~L~~L~l 168 (171)
+|++++..+..+..+++|++|++++|+++ .+|. .+.++++|++|++++|+ +. +..+++|++|++
T Consensus 103 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l 181 (353)
T 2z80_A 103 EHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEI 181 (353)
T ss_dssp CEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEE
T ss_pred CEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEEC
Confidence 56666543344677778888888888777 4554 56777777777777773 43 233455666655
No 28
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.46 E-value=2e-13 Score=103.97 Aligned_cols=97 Identities=28% Similarity=0.192 Sum_probs=56.3
Q ss_pred CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc------------cccccccCCccccCCcCCCEEec
Q 047948 59 RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI------------TNKLSGQIPSEIGLLTHLTVLHI 126 (171)
Q Consensus 59 ~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~------------~n~l~g~~p~~~~~l~~L~~L~l 126 (171)
++++|++++|.+++..+. .+..++.|++|++++|.+++..+..+ .|++++..+..+..+++|+.|++
T Consensus 86 ~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 164 (272)
T 3rfs_A 86 NLTYLILTGNQLQSLPNG-VFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDL 164 (272)
T ss_dssp TCCEEECTTSCCCCCCTT-TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCccCccChh-HhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEEC
Confidence 566666666666644433 45666666666666666665444332 45555444444556666666666
Q ss_pred ccCcccccCChhhhCccccCceeccccccc
Q 047948 127 SRNQLNGSIPQEVGQLTFLNHLILDLIFLI 156 (171)
Q Consensus 127 s~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~ 156 (171)
++|++++..|..+..+++|++|++++|+++
T Consensus 165 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 194 (272)
T 3rfs_A 165 SYNQLQSLPEGVFDKLTQLKDLRLYQNQLK 194 (272)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred CCCCcCccCHHHhcCCccCCEEECCCCcCC
Confidence 666666444444556666666666666655
No 29
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.45 E-value=4.4e-13 Score=101.91 Aligned_cols=97 Identities=23% Similarity=0.305 Sum_probs=63.0
Q ss_pred CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc------------cccccccCCccccCCcCCCEEec
Q 047948 59 RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI------------TNKLSGQIPSEIGLLTHLTVLHI 126 (171)
Q Consensus 59 ~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~------------~n~l~g~~p~~~~~l~~L~~L~l 126 (171)
++++|++++|.+++..+. .+..++.|++|++++|.+.+..+..+ .|.+.+..+..+..+++|++|++
T Consensus 53 ~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 131 (276)
T 2z62_A 53 ELQVLDLSRCEIQTIEDG-AYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNV 131 (276)
T ss_dssp TCSEEECTTCCCCEECTT-TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEEC
T ss_pred CCcEEECCCCcCCccCHH-HccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEEC
Confidence 566666666666644444 56666666666666666665544433 45555554445677777777777
Q ss_pred ccCcccc-cCChhhhCccccCceeccccccc
Q 047948 127 SRNQLNG-SIPQEVGQLTFLNHLILDLIFLI 156 (171)
Q Consensus 127 s~N~l~g-~~P~~~~~l~~L~~L~Ls~N~l~ 156 (171)
++|++++ .+|..+.++++|++|++++|+++
T Consensus 132 ~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~ 162 (276)
T 2z62_A 132 AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162 (276)
T ss_dssp CSSCCCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred cCCccceecCchhhccCCCCCEEECCCCCCC
Confidence 7777765 35777777777777777777776
No 30
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.45 E-value=3e-13 Score=98.06 Aligned_cols=106 Identities=23% Similarity=0.213 Sum_probs=90.2
Q ss_pred EEEEcCCCccceecCCCCCCCCCCCcEEEeecCccccccccc-c------------cccccccCCccccCCcCCCEEecc
Q 047948 61 VGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQ-I------------TNKLSGQIPSEIGLLTHLTVLHIS 127 (171)
Q Consensus 61 ~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~-~------------~n~l~g~~p~~~~~l~~L~~L~ls 127 (171)
+.+++++++++ .+|. .+.. .|+.|++++|.+.+..+.. + +|++++..|..|..+++|++|+++
T Consensus 11 ~~l~~s~~~l~-~ip~-~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPR-DIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TEEECTTSCCS-SCCS-CCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCCcC-cCcc-CCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 67999999996 7777 5544 8999999999998776642 3 799999889999999999999999
Q ss_pred cCcccccCChhhhCccccCceeccccccc------cccchhhhcccccc
Q 047948 128 RNQLNGSIPQEVGQLTFLNHLILDLIFLI------FWMVQSLVLLAIWP 170 (171)
Q Consensus 128 ~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~------~~~~~~L~~L~l~~ 170 (171)
+|++++..|..|.++++|++|+|++|+++ +..+++|+.|++..
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 135 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLAS 135 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTT
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCC
Confidence 99999888888999999999999999998 34566788888743
No 31
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.44 E-value=3.6e-13 Score=109.71 Aligned_cols=109 Identities=25% Similarity=0.191 Sum_probs=72.7
Q ss_pred CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc------------cccccccCCccccCCcCCCEEec
Q 047948 59 RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI------------TNKLSGQIPSEIGLLTHLTVLHI 126 (171)
Q Consensus 59 ~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~------------~n~l~g~~p~~~~~l~~L~~L~l 126 (171)
+++.|+|++|.+++..+. .|..++.|++|++++|.+.+..|..+ .|++....+..+..+++|++|++
T Consensus 33 ~l~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 111 (477)
T 2id5_A 33 ETRLLDLGKNRIKTLNQD-EFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI 111 (477)
T ss_dssp TCSEEECCSSCCCEECTT-TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEEC
T ss_pred CCcEEECCCCccceECHh-HccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEEC
Confidence 577788888887766565 77777788888888777776666554 45555444445666777777777
Q ss_pred ccCcccccCChhhhCccccCceeccccccc------cccchhhhcccc
Q 047948 127 SRNQLNGSIPQEVGQLTFLNHLILDLIFLI------FWMVQSLVLLAI 168 (171)
Q Consensus 127 s~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~------~~~~~~L~~L~l 168 (171)
++|++++..|..|.++++|++|++++|.+. +..+++|+.|++
T Consensus 112 s~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 159 (477)
T 2id5_A 112 SENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTL 159 (477)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEE
T ss_pred CCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEEC
Confidence 777777666666666777777777776665 233445555554
No 32
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.43 E-value=1.9e-13 Score=106.88 Aligned_cols=100 Identities=18% Similarity=0.166 Sum_probs=63.3
Q ss_pred CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc------------cccccccCCccccCCcCCCEEec
Q 047948 59 RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI------------TNKLSGQIPSEIGLLTHLTVLHI 126 (171)
Q Consensus 59 ~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~------------~n~l~g~~p~~~~~l~~L~~L~l 126 (171)
+++.|++++|.++ .+|. .+..++.|+.|++++|.+.+ +|..+ +|.+.+.+|..++.+++|+.|++
T Consensus 184 ~L~~L~L~~n~l~-~lp~-~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L 260 (328)
T 4fcg_A 184 NLQSLRLEWTGIR-SLPA-SIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLIL 260 (328)
T ss_dssp TCCEEEEEEECCC-CCCG-GGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEEC
T ss_pred CCCEEECcCCCcC-cchH-hhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEEC
Confidence 4555555555555 4555 55666666666666666664 33223 55666677777777777777777
Q ss_pred ccCcccccCChhhhCccccCceeccccccccccch
Q 047948 127 SRNQLNGSIPQEVGQLTFLNHLILDLIFLIFWMVQ 161 (171)
Q Consensus 127 s~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~~~~~~ 161 (171)
++|++.+.+|..+.++++|++|+|++|++.+.++.
T Consensus 261 ~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~ 295 (328)
T 4fcg_A 261 KDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPS 295 (328)
T ss_dssp TTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCG
T ss_pred CCCCchhhcchhhhcCCCCCEEeCCCCCchhhccH
Confidence 77777777777777777777777777766644444
No 33
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.42 E-value=8.1e-14 Score=119.65 Aligned_cols=89 Identities=29% Similarity=0.332 Sum_probs=50.1
Q ss_pred CCCCCCCCcEEEeecCcccccccccc------------cccccccCCccccCCcCCCEEecccCcccccCChhhhCcccc
Q 047948 78 PFSSFPHLAYLVLYNNELFYIILPQI------------TNKLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQEVGQLTFL 145 (171)
Q Consensus 78 ~l~~L~~L~~L~l~~n~l~g~~p~~~------------~n~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L 145 (171)
.+..+..|+.|+|++|.+. .+|..+ +|.++ .+|..|+.+++|++|+|++|.|+ .+|..|+.+++|
T Consensus 219 ~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L 295 (727)
T 4b8c_D 219 SKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQL 295 (727)
T ss_dssp ---CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTC
T ss_pred hhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCC
Confidence 4555666666666666655 333332 45555 55666666666666666666666 566666666666
Q ss_pred Cceeccccccc-----cccchhhhccccc
Q 047948 146 NHLILDLIFLI-----FWMVQSLVLLAIW 169 (171)
Q Consensus 146 ~~L~Ls~N~l~-----~~~~~~L~~L~l~ 169 (171)
++|+|++|.|+ +..+++|+.|+|.
T Consensus 296 ~~L~L~~N~l~~lp~~~~~l~~L~~L~L~ 324 (727)
T 4b8c_D 296 KYFYFFDNMVTTLPWEFGNLCNLQFLGVE 324 (727)
T ss_dssp SEEECCSSCCCCCCSSTTSCTTCCCEECT
T ss_pred CEEECCCCCCCccChhhhcCCCccEEeCC
Confidence 66666666654 2334455555553
No 34
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.42 E-value=4e-13 Score=102.63 Aligned_cols=109 Identities=22% Similarity=0.195 Sum_probs=57.7
Q ss_pred CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc------------cccccccCCccccCCcCCCEEec
Q 047948 59 RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI------------TNKLSGQIPSEIGLLTHLTVLHI 126 (171)
Q Consensus 59 ~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~------------~n~l~g~~p~~~~~l~~L~~L~l 126 (171)
++++|++++|.+.+..+. .+..++.|++|++++|.+.+..+..+ +|++++..+..+..+++|+.|++
T Consensus 106 ~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 184 (285)
T 1ozn_A 106 RLHTLHLDRCGLQELGPG-LFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLL 184 (285)
T ss_dssp TCCEEECTTSCCCCCCTT-TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCEECHh-HhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEEC
Confidence 445555555555543333 45555555555555555554333222 44555444444555666666666
Q ss_pred ccCcccccCChhhhCccccCceeccccccc------cccchhhhcccc
Q 047948 127 SRNQLNGSIPQEVGQLTFLNHLILDLIFLI------FWMVQSLVLLAI 168 (171)
Q Consensus 127 s~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~------~~~~~~L~~L~l 168 (171)
++|.+++..|..+.++++|++|++++|+++ ...+++|+.|++
T Consensus 185 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 232 (285)
T 1ozn_A 185 HQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRL 232 (285)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEEC
T ss_pred CCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEec
Confidence 666666555666666666666666666665 222345555555
No 35
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.42 E-value=1.8e-13 Score=96.85 Aligned_cols=94 Identities=24% Similarity=0.277 Sum_probs=60.1
Q ss_pred CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccccccccccCCccccCCcCCCEEecccCcccccCC--
Q 047948 59 RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQITNKLSGQIPSEIGLLTHLTVLHISRNQLNGSIP-- 136 (171)
Q Consensus 59 ~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~~n~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P-- 136 (171)
+++.|++++|.+++. . .+..++.|++|++++|.+. +.+|..+..+++|++|++++|.+++ +|
T Consensus 50 ~L~~L~l~~n~l~~~--~-~~~~l~~L~~L~Ls~N~l~------------~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~ 113 (168)
T 2ell_A 50 NLEFLSLINVGLISV--S-NLPKLPKLKKLELSENRIF------------GGLDMLAEKLPNLTHLNLSGNKLKD-ISTL 113 (168)
T ss_dssp GCCEEEEESSCCCCC--S-SCCCCSSCCEEEEESCCCC------------SCCCHHHHHCTTCCEEECBSSSCCS-SGGG
T ss_pred CCCEEeCcCCCCCCh--h-hhccCCCCCEEECcCCcCc------------hHHHHHHhhCCCCCEEeccCCccCc-chhH
Confidence 455555555555433 2 4555555555555555554 4455666668888888888888884 33
Q ss_pred hhhhCccccCceecccccccc---------ccchhhhcccc
Q 047948 137 QEVGQLTFLNHLILDLIFLIF---------WMVQSLVLLAI 168 (171)
Q Consensus 137 ~~~~~l~~L~~L~Ls~N~l~~---------~~~~~L~~L~l 168 (171)
..+..+++|++|++++|+++. ..+++|+.|++
T Consensus 114 ~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l 154 (168)
T 2ell_A 114 EPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDG 154 (168)
T ss_dssp GGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETT
T ss_pred HHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecC
Confidence 677788888888888888772 22456666666
No 36
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.42 E-value=5e-13 Score=112.16 Aligned_cols=109 Identities=21% Similarity=0.158 Sum_probs=79.3
Q ss_pred CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc------------cccccccCCccccCCcCCCEEec
Q 047948 59 RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI------------TNKLSGQIPSEIGLLTHLTVLHI 126 (171)
Q Consensus 59 ~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~------------~n~l~g~~p~~~~~l~~L~~L~l 126 (171)
+++.|++++|.+.+..+. .|..++.|+.|++++|.+.+..|..+ +|.+.+..+..|+.+++|++|++
T Consensus 76 ~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 154 (597)
T 3oja_B 76 QVELLNLNDLQIEEIDTY-AFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSM 154 (597)
T ss_dssp CCSEEECTTSCCCEECTT-TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCcEEECCCCCCCCCChH-HhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEe
Confidence 467777888887766665 78888888888888888887666554 67777544444678888888888
Q ss_pred ccCcccccCChhhhCccccCceeccccccc---cccchhhhcccc
Q 047948 127 SRNQLNGSIPQEVGQLTFLNHLILDLIFLI---FWMVQSLVLLAI 168 (171)
Q Consensus 127 s~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~---~~~~~~L~~L~l 168 (171)
++|.+++..|..|..+++|++|++++|.++ ...+++|+.|++
T Consensus 155 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l 199 (597)
T 3oja_B 155 SNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANV 199 (597)
T ss_dssp CSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEEC
T ss_pred eCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhc
Confidence 888888777777888888888888888877 233444444444
No 37
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.42 E-value=3.3e-13 Score=117.34 Aligned_cols=108 Identities=17% Similarity=0.112 Sum_probs=69.6
Q ss_pred CcccceeeCCCCCEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccc-cccc------------cccccccCCc
Q 047948 47 CAWSGIHCNHAGRVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYII-LPQI------------TNKLSGQIPS 113 (171)
Q Consensus 47 c~w~gv~c~~~~~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~-p~~~------------~n~l~g~~p~ 113 (171)
|.|..|.+ -..+++.|+|++|.+++..+. .|..++.|++|++++|...+.+ |..+ +|.+.+..|.
T Consensus 14 ~~L~~vP~-lp~~l~~LdLs~N~i~~i~~~-~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~ 91 (844)
T 3j0a_A 14 CNLTQVPQ-VLNTTERLLLSFNYIRTVTAS-SFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPD 91 (844)
T ss_dssp CCSSCCCS-SCTTCCEEEEESCCCCEECSS-SCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTT
T ss_pred CCCCCCCC-CCCCcCEEECCCCcCCccChh-HCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHh
Confidence 34555555 334677777777777766666 6777777777777777555554 3333 5666666666
Q ss_pred cccCCcCCCEEecccCcccccCChh--hhCccccCceeccccccc
Q 047948 114 EIGLLTHLTVLHISRNQLNGSIPQE--VGQLTFLNHLILDLIFLI 156 (171)
Q Consensus 114 ~~~~l~~L~~L~ls~N~l~g~~P~~--~~~l~~L~~L~Ls~N~l~ 156 (171)
.|..+++|++|++++|.+++.+|.. +.++++|++|+|++|.++
T Consensus 92 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~ 136 (844)
T 3j0a_A 92 AFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIR 136 (844)
T ss_dssp SSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCC
T ss_pred HccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCccc
Confidence 6666667777777777666655554 666666666666666664
No 38
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.42 E-value=5.5e-13 Score=98.71 Aligned_cols=98 Identities=19% Similarity=0.240 Sum_probs=87.3
Q ss_pred CCEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc------------cccccccCCccccCCcCCCEEe
Q 047948 58 GRVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI------------TNKLSGQIPSEIGLLTHLTVLH 125 (171)
Q Consensus 58 ~~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~------------~n~l~g~~p~~~~~l~~L~~L~ 125 (171)
.+++.|+|++|.+++..|. .|..++.|++|++++|.++...+..+ +|++.+..|..|..+++|+.|+
T Consensus 56 ~~L~~L~Ls~N~i~~~~~~-~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 134 (220)
T 2v9t_B 56 KKLRRIDLSNNQISELAPD-AFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLS 134 (220)
T ss_dssp TTCCEEECCSSCCCEECTT-TTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCcCCCcCHH-HhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEE
Confidence 4799999999999977787 89999999999999999985544333 7899988888999999999999
Q ss_pred cccCcccccCChhhhCccccCceeccccccc
Q 047948 126 ISRNQLNGSIPQEVGQLTFLNHLILDLIFLI 156 (171)
Q Consensus 126 ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~ 156 (171)
+++|++++..+..+..+++|++|++++|++.
T Consensus 135 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 135 LYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 9999999777777999999999999999987
No 39
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.41 E-value=4.3e-13 Score=112.07 Aligned_cols=110 Identities=15% Similarity=0.105 Sum_probs=90.0
Q ss_pred CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc------------cccccccCCccccCCcCCCEEec
Q 047948 59 RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI------------TNKLSGQIPSEIGLLTHLTVLHI 126 (171)
Q Consensus 59 ~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~------------~n~l~g~~p~~~~~l~~L~~L~l 126 (171)
.++.|++++|.+++..|. .|..+++|++|++++|.+.+..|..+ +|++.+..|..++.+++|++|++
T Consensus 34 ~l~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 112 (606)
T 3t6q_A 34 STECLEFSFNVLPTIQNT-TFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFF 112 (606)
T ss_dssp TCCEEECTTCCCSEECTT-TSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEEC
T ss_pred cCcEEEccCCccCcCChh-HhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeec
Confidence 789999999999977677 89999999999999999988777665 68888878888888888889988
Q ss_pred ccCcccccCChhhhCccccCceecccccccc------ccchhhhccccc
Q 047948 127 SRNQLNGSIPQEVGQLTFLNHLILDLIFLIF------WMVQSLVLLAIW 169 (171)
Q Consensus 127 s~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~~------~~~~~L~~L~l~ 169 (171)
++|++++..|..++++++|++|++++|+++. ..+++|++|++.
T Consensus 113 ~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 161 (606)
T 3t6q_A 113 IQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQ 161 (606)
T ss_dssp TTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECC
T ss_pred cccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcc
Confidence 8888886656778888888888888888762 224677777764
No 40
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.41 E-value=3e-13 Score=102.93 Aligned_cols=110 Identities=22% Similarity=0.178 Sum_probs=92.7
Q ss_pred CCEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc------------cccccccCCccccCCcCCCEEe
Q 047948 58 GRVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI------------TNKLSGQIPSEIGLLTHLTVLH 125 (171)
Q Consensus 58 ~~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~------------~n~l~g~~p~~~~~l~~L~~L~ 125 (171)
.++++|++++|.+++..+. .+..++.|+.|++++|.+++..+..+ .|++++..+..+..+++|+.|+
T Consensus 109 ~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 187 (272)
T 3rfs_A 109 TNLKELVLVENQLQSLPDG-VFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLR 187 (272)
T ss_dssp TTCCEEECTTSCCCCCCTT-TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cCCCEEECCCCcCCccCHH-HhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEE
Confidence 3799999999999966555 68999999999999999997666443 7888877777789999999999
Q ss_pred cccCcccccCChhhhCccccCceeccccccccccchhhhccccc
Q 047948 126 ISRNQLNGSIPQEVGQLTFLNHLILDLIFLIFWMVQSLVLLAIW 169 (171)
Q Consensus 126 ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~~~~~~~L~~L~l~ 169 (171)
+++|++++..|..+..+++|++|++++|++.+. ++.|+.|++|
T Consensus 188 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-~~~l~~l~~~ 230 (272)
T 3rfs_A 188 LYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-CPGIRYLSEW 230 (272)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-TTTTHHHHHH
T ss_pred CCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-CcHHHHHHHH
Confidence 999999987777789999999999999999754 4566666654
No 41
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.41 E-value=3.1e-13 Score=93.81 Aligned_cols=95 Identities=18% Similarity=0.149 Sum_probs=68.0
Q ss_pred CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccccccccccCCccccCCcCCCEEecccCccccc-CCh
Q 047948 59 RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQITNKLSGQIPSEIGLLTHLTVLHISRNQLNGS-IPQ 137 (171)
Q Consensus 59 ~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~~n~l~g~~p~~~~~l~~L~~L~ls~N~l~g~-~P~ 137 (171)
+++.|++++|.+++. . .+..++.|+.|++++|.++ +.+|..+..+++|++|++++|.+++. .|.
T Consensus 43 ~L~~L~l~~n~l~~~--~-~~~~l~~L~~L~Ls~n~i~------------~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~ 107 (149)
T 2je0_A 43 ELEFLSTINVGLTSI--A-NLPKLNKLKKLELSDNRVS------------GGLEVLAEKCPNLTHLNLSGNKIKDLSTIE 107 (149)
T ss_dssp TCCEEECTTSCCCCC--T-TCCCCTTCCEEECCSSCCC------------SCTHHHHHHCTTCCEEECTTSCCCSHHHHG
T ss_pred CCcEEECcCCCCCCc--h-hhhcCCCCCEEECCCCccc------------chHHHHhhhCCCCCEEECCCCcCCChHHHH
Confidence 566666666666644 3 4666666666666666665 34556667789999999999999863 447
Q ss_pred hhhCccccCceeccccccccc---------cchhhhcccc
Q 047948 138 EVGQLTFLNHLILDLIFLIFW---------MVQSLVLLAI 168 (171)
Q Consensus 138 ~~~~l~~L~~L~Ls~N~l~~~---------~~~~L~~L~l 168 (171)
.+..+++|++|++++|+++.. .+++|+.|++
T Consensus 108 ~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 108 PLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp GGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred HHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence 788999999999999988732 2356666665
No 42
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.41 E-value=3.3e-13 Score=98.66 Aligned_cols=110 Identities=23% Similarity=0.189 Sum_probs=87.8
Q ss_pred CCEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc------------cccccccCCccccCCcCCCEEe
Q 047948 58 GRVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI------------TNKLSGQIPSEIGLLTHLTVLH 125 (171)
Q Consensus 58 ~~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~------------~n~l~g~~p~~~~~l~~L~~L~ 125 (171)
.++++|++++|.+++..+. .|..++.|++|++++|.+++..+..+ .|++.+..+..+..+++|+.|+
T Consensus 52 ~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 130 (208)
T 2o6s_A 52 TSLTQLYLGGNKLQSLPNG-VFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLR 130 (208)
T ss_dssp TTCSEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred ccCcEEECCCCccCccChh-hcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEE
Confidence 3789999999998854444 67889999999999999886555433 6788876666788999999999
Q ss_pred cccCcccccCChhhhCccccCceeccccccccccchhhhccccc
Q 047948 126 ISRNQLNGSIPQEVGQLTFLNHLILDLIFLIFWMVQSLVLLAIW 169 (171)
Q Consensus 126 ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~~~~~~~L~~L~l~ 169 (171)
+++|++++..+..+..+++|++|++++|.+.+. ++.|+.|++|
T Consensus 131 l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-~~~l~~L~~~ 173 (208)
T 2o6s_A 131 LYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-CPGIRYLSEW 173 (208)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCC-TTTTHHHHHH
T ss_pred CCCCccceeCHHHhccCCCccEEEecCCCeecC-CCCHHHHHHH
Confidence 999999966666688999999999999998743 4566666654
No 43
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.40 E-value=7.5e-13 Score=101.98 Aligned_cols=97 Identities=16% Similarity=0.179 Sum_probs=51.4
Q ss_pred CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccc-cccccc------------cccccccCCccccCCcCCCEEe
Q 047948 59 RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFY-IILPQI------------TNKLSGQIPSEIGLLTHLTVLH 125 (171)
Q Consensus 59 ~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g-~~p~~~------------~n~l~g~~p~~~~~l~~L~~L~ 125 (171)
+++.|++++|.+.+..+. .+..++.|+.|++++|.+.+ .+|..+ +|++.+..|..+..+++|+.|+
T Consensus 127 ~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 205 (306)
T 2z66_A 127 NLIYLDISHTHTRVAFNG-IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 205 (306)
T ss_dssp TCCEEECTTSCCEECSTT-TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCEEECCCCcCCccchh-hcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEE
Confidence 445555555555444444 45555555555555555544 233322 4555555555555555666666
Q ss_pred cccCcccccCChhhhCccccCceeccccccc
Q 047948 126 ISRNQLNGSIPQEVGQLTFLNHLILDLIFLI 156 (171)
Q Consensus 126 ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~ 156 (171)
+++|++++..+..+..+++|++|++++|+++
T Consensus 206 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 236 (306)
T 2z66_A 206 MSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 236 (306)
T ss_dssp CTTSCCSBCCSGGGTTCTTCCEEECTTSCCC
T ss_pred CCCCccCccChhhccCcccCCEeECCCCCCc
Confidence 6666655444445555556666666666555
No 44
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.39 E-value=1.2e-12 Score=99.36 Aligned_cols=97 Identities=26% Similarity=0.183 Sum_probs=47.8
Q ss_pred CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc------------cccccccCCccccCCcCCCEEec
Q 047948 59 RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI------------TNKLSGQIPSEIGLLTHLTVLHI 126 (171)
Q Consensus 59 ~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~------------~n~l~g~~p~~~~~l~~L~~L~l 126 (171)
++++|++++|.+++..+. .|..++.|++|++++|.+++..+..+ +|.+.+..+..+..+++|+.|++
T Consensus 86 ~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 164 (270)
T 2o6q_A 86 NLETLWVTDNKLQALPIG-VFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRL 164 (270)
T ss_dssp TCCEEECCSSCCCCCCTT-TTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCcCCHh-HcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEe
Confidence 344444444444432222 34445555555555555444333222 34444433334555556666666
Q ss_pred ccCcccccCChhhhCccccCceeccccccc
Q 047948 127 SRNQLNGSIPQEVGQLTFLNHLILDLIFLI 156 (171)
Q Consensus 127 s~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~ 156 (171)
++|++++..+..|.++++|++|++++|+++
T Consensus 165 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 194 (270)
T 2o6q_A 165 YNNQLKRVPEGAFDKLTELKTLKLDNNQLK 194 (270)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred cCCcCcEeChhHhccCCCcCEEECCCCcCC
Confidence 666655443344555566666666666555
No 45
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.38 E-value=1.5e-12 Score=100.20 Aligned_cols=66 Identities=21% Similarity=0.117 Sum_probs=40.5
Q ss_pred cccccccCCccccCCcCCCEEecccCcccccCChhhhCccccCceeccccccc------cccchhhhccccc
Q 047948 104 TNKLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQEVGQLTFLNHLILDLIFLI------FWMVQSLVLLAIW 169 (171)
Q Consensus 104 ~n~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~------~~~~~~L~~L~l~ 169 (171)
.|++++..|..|..+++|++|++++|++++..+..|..+++|++|+|++|+++ +..+++|+.|++.
T Consensus 109 ~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~ 180 (290)
T 1p9a_G 109 FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQ 180 (290)
T ss_dssp SSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECC
T ss_pred CCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECC
Confidence 55666555555666667777777777766444444566667777777777666 2334566666653
No 46
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.38 E-value=7.7e-13 Score=101.92 Aligned_cols=111 Identities=20% Similarity=0.190 Sum_probs=80.8
Q ss_pred CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc------------cccccc-cCCccccCCcCCCEEe
Q 047948 59 RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI------------TNKLSG-QIPSEIGLLTHLTVLH 125 (171)
Q Consensus 59 ~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~------------~n~l~g-~~p~~~~~l~~L~~L~ 125 (171)
+++.|++++|.+++..+...+..++.|+.|++++|.+.+..+..+ +|.+.+ .+|..+..+++|++|+
T Consensus 102 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 181 (306)
T 2z66_A 102 QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD 181 (306)
T ss_dssp TCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEE
T ss_pred CCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEE
Confidence 456666666666644331256777777778887777776655544 677776 5677788888899999
Q ss_pred cccCcccccCChhhhCccccCceeccccccc------cccchhhhccccc
Q 047948 126 ISRNQLNGSIPQEVGQLTFLNHLILDLIFLI------FWMVQSLVLLAIW 169 (171)
Q Consensus 126 ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~------~~~~~~L~~L~l~ 169 (171)
+++|++++..|..+..+++|++|++++|+++ ...+++|+.|++.
T Consensus 182 Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 231 (306)
T 2z66_A 182 LSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYS 231 (306)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECT
T ss_pred CCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECC
Confidence 9999888777888888888999999998887 2335677777774
No 47
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.38 E-value=8.8e-13 Score=110.20 Aligned_cols=97 Identities=15% Similarity=0.064 Sum_probs=64.3
Q ss_pred CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCccccc-ccccc------------cccccccCCccccCCcCCCEEe
Q 047948 59 RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYI-ILPQI------------TNKLSGQIPSEIGLLTHLTVLH 125 (171)
Q Consensus 59 ~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~-~p~~~------------~n~l~g~~p~~~~~l~~L~~L~ 125 (171)
+++.|++++|.+.+..|. .+..++.|+.|++++|.+.+. +|..+ +|++++..|..+..+++|+.|+
T Consensus 425 ~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 503 (606)
T 3vq2_A 425 KLLYLDISYTNTKIDFDG-IFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLN 503 (606)
T ss_dssp TCCEEECTTSCCEECCTT-TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred cCCEEECcCCCCCccchh-hhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEE
Confidence 456666666666655555 566666666666666666653 44433 5666666666677777777777
Q ss_pred cccCcccccCChhhhCccccCceeccccccc
Q 047948 126 ISRNQLNGSIPQEVGQLTFLNHLILDLIFLI 156 (171)
Q Consensus 126 ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~ 156 (171)
+++|++++..|..+.++++|++|++++|+++
T Consensus 504 Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 534 (606)
T 3vq2_A 504 MSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE 534 (606)
T ss_dssp CCSSCCSCEEGGGTTTCTTCCEEECTTSCCC
T ss_pred CCCCcCCCcCHHHccCCCcCCEEECCCCcCc
Confidence 7777777666777777777777777777766
No 48
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.37 E-value=4e-13 Score=104.18 Aligned_cols=110 Identities=17% Similarity=0.119 Sum_probs=79.1
Q ss_pred CCEEEEEcCCCccceecCCCCC--CCCCCCcEEEeecCcccccccc-----------cc------cccccccCCccccCC
Q 047948 58 GRVVGINLTSMSLNGTLLEFPF--SSFPHLAYLVLYNNELFYIILP-----------QI------TNKLSGQIPSEIGLL 118 (171)
Q Consensus 58 ~~v~~L~l~~~~l~~~~p~~~l--~~L~~L~~L~l~~n~l~g~~p~-----------~~------~n~l~g~~p~~~~~l 118 (171)
.++++|++++|.+++.+|. .+ ..++.|++|++++|.+++. |. .+ +|++.+..|..++.+
T Consensus 95 ~~L~~L~L~~n~l~~~~~~-~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l 172 (312)
T 1wwl_A 95 SGLQELTLENLEVTGTAPP-PLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF 172 (312)
T ss_dssp SCCCEEEEEEEBCBSCCCC-CSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred CCccEEEccCCcccchhHH-HHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence 3678888888888888887 65 7888888888888888865 32 22 677777776778888
Q ss_pred cCCCEEecccCccccc--CChhh--hCccccCceecccccccc---------ccchhhhccccc
Q 047948 119 THLTVLHISRNQLNGS--IPQEV--GQLTFLNHLILDLIFLIF---------WMVQSLVLLAIW 169 (171)
Q Consensus 119 ~~L~~L~ls~N~l~g~--~P~~~--~~l~~L~~L~Ls~N~l~~---------~~~~~L~~L~l~ 169 (171)
++|++|++++|++.|. +|..+ ..+++|++|++++|+++. ..+++|++|++.
T Consensus 173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls 236 (312)
T 1wwl_A 173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLS 236 (312)
T ss_dssp SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECT
T ss_pred CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECC
Confidence 8888888888887765 34444 677777777777777761 122466666663
No 49
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.37 E-value=1.9e-13 Score=115.55 Aligned_cols=109 Identities=17% Similarity=0.197 Sum_probs=81.6
Q ss_pred CCEEEEEcCCCcccee-----------------cCCCCCC--CCCCCcEEEeecCcccccccccc------------ccc
Q 047948 58 GRVVGINLTSMSLNGT-----------------LLEFPFS--SFPHLAYLVLYNNELFYIILPQI------------TNK 106 (171)
Q Consensus 58 ~~v~~L~l~~~~l~~~-----------------~p~~~l~--~L~~L~~L~l~~n~l~g~~p~~~------------~n~ 106 (171)
.++++|+|++|.+++. +|. .+. .++.|++|++++|.+.|.+|..+ .|+
T Consensus 206 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~-~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~ 284 (636)
T 4eco_A 206 TKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTE-DLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNR 284 (636)
T ss_dssp TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTS-CCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCT
T ss_pred cCCCEEECcCCccccccccccccccccchhcccCch-hhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCC
Confidence 3688888888888875 777 777 88888888888888888888766 566
Q ss_pred -ccc-cCCccccCC------cCCCEEecccCcccccCCh--hhhCccccCceecccccccccc-----chhhhcccc
Q 047948 107 -LSG-QIPSEIGLL------THLTVLHISRNQLNGSIPQ--EVGQLTFLNHLILDLIFLIFWM-----VQSLVLLAI 168 (171)
Q Consensus 107 -l~g-~~p~~~~~l------~~L~~L~ls~N~l~g~~P~--~~~~l~~L~~L~Ls~N~l~~~~-----~~~L~~L~l 168 (171)
++| .+|..++.+ ++|++|++++|+++ .+|. .++++++|++|++++|+++|.+ +++|++|++
T Consensus 285 ~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L 360 (636)
T 4eco_A 285 GISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNL 360 (636)
T ss_dssp TSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEEC
T ss_pred CCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEEC
Confidence 777 777777665 77778888777777 7777 7777777777777777776333 345555555
No 50
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.37 E-value=1.7e-12 Score=92.78 Aligned_cols=84 Identities=23% Similarity=0.186 Sum_probs=70.3
Q ss_pred CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccccccccccCC-ccccCCcCCCEEecccCcccccCCh
Q 047948 59 RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQITNKLSGQIP-SEIGLLTHLTVLHISRNQLNGSIPQ 137 (171)
Q Consensus 59 ~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~~n~l~g~~p-~~~~~l~~L~~L~ls~N~l~g~~P~ 137 (171)
+++.|+|++|.+++..|. .|..++.|+.|++++|++++ +| ..|..+++|++|++++|++++..+.
T Consensus 34 ~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~-------------i~~~~~~~l~~L~~L~L~~N~l~~l~~~ 99 (174)
T 2r9u_A 34 DKQRLWLNNNQITKLEPG-VFDHLVNLQQLYFNSNKLTA-------------IPTGVFDKLTQLTQLDLNDNHLKSIPRG 99 (174)
T ss_dssp TCSEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCCC-------------CCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred CCcEEEeCCCCccccCHH-HhcCCcCCCEEECCCCCCCc-------------cChhHhCCcchhhEEECCCCccceeCHH
Confidence 678889999998876676 78888999999999888863 33 3468899999999999999955445
Q ss_pred hhhCccccCceeccccccc
Q 047948 138 EVGQLTFLNHLILDLIFLI 156 (171)
Q Consensus 138 ~~~~l~~L~~L~Ls~N~l~ 156 (171)
.|..+++|++|+|++|++.
T Consensus 100 ~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 100 AFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp TTTTCTTCSEEECCSSCBC
T ss_pred HhccccCCCEEEeCCCCcc
Confidence 5899999999999999987
No 51
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.37 E-value=1.8e-12 Score=105.20 Aligned_cols=103 Identities=20% Similarity=0.230 Sum_probs=78.6
Q ss_pred ccceeeCCCC----------CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc------------ccc
Q 047948 49 WSGIHCNHAG----------RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI------------TNK 106 (171)
Q Consensus 49 w~gv~c~~~~----------~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~------------~n~ 106 (171)
|..|.|...+ +++.|+|++|.+++..+. .|..++.|+.|++++|.+.+..|..+ +|+
T Consensus 56 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~-~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~ 134 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQAD-TFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW 134 (452)
T ss_dssp SCEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTT-TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CcEEEECCCCcCccCCCCCCCccEEECcCCcCceECHH-HcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc
Confidence 5677786432 789999999999977777 89999999999999999987766555 677
Q ss_pred ccccCCccccCCcCCCEEecccCcccccCChhhhCccccCceeccc
Q 047948 107 LSGQIPSEIGLLTHLTVLHISRNQLNGSIPQEVGQLTFLNHLILDL 152 (171)
Q Consensus 107 l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~L~Ls~ 152 (171)
+.+..+..+..+++|++|++++|+++...+..|.++++|++|++++
T Consensus 135 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 180 (452)
T 3zyi_A 135 LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGE 180 (452)
T ss_dssp CSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCC
T ss_pred CCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCC
Confidence 7766556677888888888888888854444566666666666665
No 52
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.36 E-value=8.8e-13 Score=111.66 Aligned_cols=97 Identities=22% Similarity=0.136 Sum_probs=51.8
Q ss_pred CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc------------cccccccCCccccCCcCCCEEec
Q 047948 59 RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI------------TNKLSGQIPSEIGLLTHLTVLHI 126 (171)
Q Consensus 59 ~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~------------~n~l~g~~p~~~~~l~~L~~L~l 126 (171)
++++|++++|.+++..+. .|..++.|++|++++|.+.+..|..+ +|++++..+..|+.+++|++|++
T Consensus 26 ~l~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 104 (680)
T 1ziw_A 26 NITVLNLTHNQLRRLPAA-NFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL 104 (680)
T ss_dssp TCSEEECCSSCCCCCCGG-GGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCcEEECCCCCCCCcCHH-HHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence 566666666666644333 46666666666666666655544433 34444332234555555555555
Q ss_pred ccCcccccCChhhhCccccCceeccccccc
Q 047948 127 SRNQLNGSIPQEVGQLTFLNHLILDLIFLI 156 (171)
Q Consensus 127 s~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~ 156 (171)
++|++++..|..|+++++|++|++++|.++
T Consensus 105 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 134 (680)
T 1ziw_A 105 MSNSIQKIKNNPFVKQKNLITLDLSHNGLS 134 (680)
T ss_dssp CSSCCCCCCSCTTTTCTTCCEEECCSSCCS
T ss_pred CCCccCccChhHccccCCCCEEECCCCccc
Confidence 555555444444555555555555555544
No 53
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.36 E-value=1.1e-12 Score=95.20 Aligned_cols=108 Identities=15% Similarity=0.198 Sum_probs=75.8
Q ss_pred CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc------------cccccccCCccccCCcCCCEEec
Q 047948 59 RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI------------TNKLSGQIPSEIGLLTHLTVLHI 126 (171)
Q Consensus 59 ~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~------------~n~l~g~~p~~~~~l~~L~~L~l 126 (171)
+++.|++++|.+. . ++ .+..++.|++|++++|.+++..|..+ .|++.+..|..++.+++|++|++
T Consensus 67 ~L~~L~l~~n~~~-~-~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L 143 (197)
T 4ezg_A 67 NIKDLTINNIHAT-N-YN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDL 143 (197)
T ss_dssp TCSEEEEESCCCS-C-CG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEEC
T ss_pred CCCEEEccCCCCC-c-ch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEc
Confidence 5777777777554 2 22 46677777777777777776555444 56666666777888888888888
Q ss_pred ccCcccccCChhhhCccccCceeccccccc----cccchhhhcccccc
Q 047948 127 SRNQLNGSIPQEVGQLTFLNHLILDLIFLI----FWMVQSLVLLAIWP 170 (171)
Q Consensus 127 s~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~----~~~~~~L~~L~l~~ 170 (171)
++|.+.+.+| .+..+++|++|++++|+++ ...+++|+.|++.+
T Consensus 144 ~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~~l~~l~~L~~L~l~~ 190 (197)
T 4ezg_A 144 SYNGAITDIM-PLKTLPELKSLNIQFDGVHDYRGIEDFPKLNQLYAFS 190 (197)
T ss_dssp CSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCTTGGGCSSCCEEEECB
T ss_pred cCCCCccccH-hhcCCCCCCEEECCCCCCcChHHhccCCCCCEEEeeC
Confidence 8887333666 5778888888888888877 44556777777653
No 54
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.36 E-value=1.3e-12 Score=107.37 Aligned_cols=119 Identities=17% Similarity=0.120 Sum_probs=83.4
Q ss_pred CcccceeeCCCCCEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc-------------cccccccCCc
Q 047948 47 CAWSGIHCNHAGRVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI-------------TNKLSGQIPS 113 (171)
Q Consensus 47 c~w~gv~c~~~~~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~-------------~n~l~g~~p~ 113 (171)
|.+.++.|..-.+++.|++++|.+++..|. .+..++.|+.|++++|.+++..|..+ +|.+++. +
T Consensus 109 N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~--~ 185 (487)
T 3oja_A 109 NNISRVSCSRGQGKKNIYLANNKITMLRDL-DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV--K 185 (487)
T ss_dssp SCCCCEEECCCSSCEEEECCSSCCCSGGGB-CGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE--E
T ss_pred CcCCCCCccccCCCCEEECCCCCCCCCCch-hhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc--c
Confidence 445566665445688888888888877666 77788888888888888887666543 5666654 2
Q ss_pred cccCCcCCCEEecccCcccccCChhhhCccccCceeccccccc-----cccchhhhccccc
Q 047948 114 EIGLLTHLTVLHISRNQLNGSIPQEVGQLTFLNHLILDLIFLI-----FWMVQSLVLLAIW 169 (171)
Q Consensus 114 ~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~-----~~~~~~L~~L~l~ 169 (171)
....+++|+.|++++|.+++ +|+.+..+++|++|++++|.++ ...+++|+.|++.
T Consensus 186 ~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~ 245 (487)
T 3oja_A 186 GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLR 245 (487)
T ss_dssp CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECT
T ss_pred ccccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcC
Confidence 23457788888888888884 5555777888888888888876 2334566666664
No 55
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.35 E-value=2.5e-12 Score=98.96 Aligned_cols=108 Identities=21% Similarity=0.195 Sum_probs=78.8
Q ss_pred CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc------------cccccccCCccccCCcCCCEEec
Q 047948 59 RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI------------TNKLSGQIPSEIGLLTHLTVLHI 126 (171)
Q Consensus 59 ~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~------------~n~l~g~~p~~~~~l~~L~~L~l 126 (171)
+++.|++++|.++ .+|. .+..++.|++|++++|++++..|..+ +|++.+..+..+..+++|+.|++
T Consensus 78 ~L~~L~Ls~N~l~-~l~~-~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 155 (290)
T 1p9a_G 78 VLGTLDLSHNQLQ-SLPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155 (290)
T ss_dssp TCCEEECCSSCCS-SCCC-CTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cCCEEECCCCcCC-cCch-hhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEEC
Confidence 5777777777776 5666 67788888888888888886655544 67777666666778888999999
Q ss_pred ccCcccccCChhhhCccccCceeccccccc-----cccchhhhcccc
Q 047948 127 SRNQLNGSIPQEVGQLTFLNHLILDLIFLI-----FWMVQSLVLLAI 168 (171)
Q Consensus 127 s~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~-----~~~~~~L~~L~l 168 (171)
++|++++..+..+..+++|++|+|++|+++ .....+|+.+++
T Consensus 156 ~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L 202 (290)
T 1p9a_G 156 ANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFL 202 (290)
T ss_dssp TTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEEC
T ss_pred CCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEe
Confidence 998888444445677888888888888887 222335666655
No 56
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.35 E-value=2.5e-12 Score=100.12 Aligned_cols=57 Identities=18% Similarity=0.272 Sum_probs=40.9
Q ss_pred CCcccceeeCCC----------CCEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc
Q 047948 46 PCAWSGIHCNHA----------GRVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI 103 (171)
Q Consensus 46 ~c~w~gv~c~~~----------~~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~ 103 (171)
.|.|+.+.|... ..++.|++++|.+++..+. .|..++.|++|++++|.+++..|..+
T Consensus 30 ~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~ 96 (330)
T 1xku_A 30 QCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDG-DFKNLKNLHTLILINNKISKISPGAF 96 (330)
T ss_dssp EEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTT-TTTTCTTCCEEECCSSCCCCBCTTTT
T ss_pred cCCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChh-hhccCCCCCEEECCCCcCCeeCHHHh
Confidence 457888888632 2677888888888765555 67788888888888888876666554
No 57
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.34 E-value=3e-12 Score=91.16 Aligned_cols=95 Identities=25% Similarity=0.218 Sum_probs=78.6
Q ss_pred EEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccccccccccCCccccCCcCCCEEecccCcccccCChhh
Q 047948 60 VVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQITNKLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQEV 139 (171)
Q Consensus 60 v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~~n~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~ 139 (171)
.+.++++++.++ .+|. .+ .+.|+.|++++|.+++ ..|..|..+++|++|++++|++++..|..|
T Consensus 11 ~~~l~~s~n~l~-~ip~-~~--~~~l~~L~L~~N~i~~------------~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f 74 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPT-GI--PTTTQVLYLYDNQITK------------LEPGVFDRLTQLTRLDLDNNQLTVLPAGVF 74 (170)
T ss_dssp TTEEECTTSCCS-SCCS-CC--CTTCSEEECCSSCCCC------------CCTTTTTTCTTCSEEECCSSCCCCCCTTTT
T ss_pred CCEEEeCCCCcC-ccCc-cC--CCCCcEEEcCCCcCCc------------cChhhhcCcccCCEEECCCCCcCccChhhc
Confidence 368999999998 5776 55 3789999999999874 335678899999999999999996666667
Q ss_pred hCccccCceeccccccc------cccchhhhcccccc
Q 047948 140 GQLTFLNHLILDLIFLI------FWMVQSLVLLAIWP 170 (171)
Q Consensus 140 ~~l~~L~~L~Ls~N~l~------~~~~~~L~~L~l~~ 170 (171)
..+++|++|+|++|+|+ +..+++|+.|++..
T Consensus 75 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 111 (170)
T 3g39_A 75 DKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLN 111 (170)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred cCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCC
Confidence 89999999999999998 34567888888753
No 58
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.34 E-value=1.1e-12 Score=109.81 Aligned_cols=92 Identities=24% Similarity=0.191 Sum_probs=64.1
Q ss_pred EEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc------------cccccccCCccccCCcCCCEEecc
Q 047948 60 VVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI------------TNKLSGQIPSEIGLLTHLTVLHIS 127 (171)
Q Consensus 60 v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~------------~n~l~g~~p~~~~~l~~L~~L~ls 127 (171)
++.|++++|.+++ +|. +..++.|+.|++++|.++ .+|..+ +|++++ +| .++.+++|+.|+++
T Consensus 443 L~~L~Ls~n~l~~-lp~--~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls 516 (567)
T 1dce_A 443 VRVLHLAHKDLTV-LCH--LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLC 516 (567)
T ss_dssp CSEEECTTSCCSS-CCC--GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECC
T ss_pred ceEEEecCCCCCC-CcC--ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECC
Confidence 4445555555543 332 445555555555555554 344333 344554 56 78999999999999
Q ss_pred cCcccccC-ChhhhCccccCceecccccccc
Q 047948 128 RNQLNGSI-PQEVGQLTFLNHLILDLIFLIF 157 (171)
Q Consensus 128 ~N~l~g~~-P~~~~~l~~L~~L~Ls~N~l~~ 157 (171)
+|++++.. |..++.+++|++|+|++|++++
T Consensus 517 ~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~ 547 (567)
T 1dce_A 517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 547 (567)
T ss_dssp SSCCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred CCCCCCCCCcHHHhcCCCCCEEEecCCcCCC
Confidence 99999776 9999999999999999999983
No 59
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.34 E-value=2.8e-12 Score=97.42 Aligned_cols=97 Identities=21% Similarity=0.145 Sum_probs=53.9
Q ss_pred CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc------------cccccccCCccccCCcCCCEEec
Q 047948 59 RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI------------TNKLSGQIPSEIGLLTHLTVLHI 126 (171)
Q Consensus 59 ~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~------------~n~l~g~~p~~~~~l~~L~~L~l 126 (171)
.+++|++++|.+++..+. .|..++.|++|++++|.+.+..+..+ +|.+.+..|..+..+++|++|++
T Consensus 29 ~l~~L~ls~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSY-SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TCCEEECTTCCCCEECTT-TTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CccEEECCCCcccccCHh-HhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 355666666665544443 55556666666666665554433332 45555555555555666666666
Q ss_pred ccCcccccCChhhhCccccCceeccccccc
Q 047948 127 SRNQLNGSIPQEVGQLTFLNHLILDLIFLI 156 (171)
Q Consensus 127 s~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~ 156 (171)
++|++++..+..+.++++|++|++++|.++
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 137 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQ 137 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCC
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccc
Confidence 666665444444555666666666666554
No 60
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.33 E-value=3e-12 Score=101.20 Aligned_cols=97 Identities=26% Similarity=0.226 Sum_probs=83.0
Q ss_pred CCEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc------------cccccccCCccccCCcCCCEEe
Q 047948 58 GRVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI------------TNKLSGQIPSEIGLLTHLTVLH 125 (171)
Q Consensus 58 ~~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~------------~n~l~g~~p~~~~~l~~L~~L~ 125 (171)
.+++.|+|++|.+++..+. .|..++.|+.|++++|++.+..+..+ +|++.+..|..|..+++|+.|+
T Consensus 64 ~~L~~L~L~~N~i~~i~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~ 142 (361)
T 2xot_A 64 TNLHSLLLSHNHLNFISSE-AFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLY 142 (361)
T ss_dssp TTCCEEECCSSCCCEECTT-TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred cccCEEECCCCcCCccChh-hccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEE
Confidence 4789999999999966666 79999999999999999987666544 7888888888999999999999
Q ss_pred cccCcccccCChhh----hCccccCceeccccccc
Q 047948 126 ISRNQLNGSIPQEV----GQLTFLNHLILDLIFLI 156 (171)
Q Consensus 126 ls~N~l~g~~P~~~----~~l~~L~~L~Ls~N~l~ 156 (171)
|++|+++ .+|..+ ..+++|++|+|++|+|+
T Consensus 143 L~~N~l~-~l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 143 LSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp CCSSCCC-SCCGGGTC----CTTCCEEECCSSCCC
T ss_pred CCCCcCC-eeCHHHhcCcccCCcCCEEECCCCCCC
Confidence 9999999 566654 57899999999999998
No 61
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.32 E-value=5.3e-12 Score=102.07 Aligned_cols=104 Identities=19% Similarity=0.241 Sum_probs=77.9
Q ss_pred ccceeeCCC----------CCEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc------------ccc
Q 047948 49 WSGIHCNHA----------GRVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI------------TNK 106 (171)
Q Consensus 49 w~gv~c~~~----------~~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~------------~n~ 106 (171)
+..|.|... ..++.|+|++|.+++..+. .|..+++|+.|++++|.+.+..+..+ .|+
T Consensus 45 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~-~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~ 123 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVN-SFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123 (440)
T ss_dssp SCEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECTT-TTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC
T ss_pred CCEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHH-HhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc
Confidence 567888643 2688999999999976666 89999999999999999887665544 577
Q ss_pred ccccCCccccCCcCCCEEecccCcccccCChhhhCccccCceecccc
Q 047948 107 LSGQIPSEIGLLTHLTVLHISRNQLNGSIPQEVGQLTFLNHLILDLI 153 (171)
Q Consensus 107 l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~L~Ls~N 153 (171)
++...+..+..+++|++|++++|.++...+..|.++++|++|++++|
T Consensus 124 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~ 170 (440)
T 3zyj_A 124 LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGEL 170 (440)
T ss_dssp CSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCC
T ss_pred CCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCC
Confidence 77655556778888888888888887555555666666666666663
No 62
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.32 E-value=3.8e-12 Score=91.00 Aligned_cols=93 Identities=23% Similarity=0.215 Sum_probs=76.7
Q ss_pred EEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccccccccccCCccccCCcCCCEEecccCcccccCChhhh
Q 047948 61 VGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQITNKLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQEVG 140 (171)
Q Consensus 61 ~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~~n~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~ 140 (171)
+.++++++++. .+|. .+. +.|+.|++++|.+++ ..|..|..+++|++|+|++|++++..+..|.
T Consensus 15 ~~l~~~~n~l~-~iP~-~~~--~~L~~L~Ls~N~l~~------------~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~ 78 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPA-GIP--TDKQRLWLNNNQITK------------LEPGVFDHLVNLQQLYFNSNKLTAIPTGVFD 78 (174)
T ss_dssp SEEECCSSCCS-SCCS-CCC--TTCSEEECCSSCCCC------------CCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred cEEEeCCCCCC-ccCC-CcC--CCCcEEEeCCCCccc------------cCHHHhcCCcCCCEEECCCCCCCccChhHhC
Confidence 67889999986 6777 554 799999999999874 3356788999999999999999965555578
Q ss_pred CccccCceeccccccc------cccchhhhccccc
Q 047948 141 QLTFLNHLILDLIFLI------FWMVQSLVLLAIW 169 (171)
Q Consensus 141 ~l~~L~~L~Ls~N~l~------~~~~~~L~~L~l~ 169 (171)
++++|++|+|++|+|+ +..+++|+.|++.
T Consensus 79 ~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~ 113 (174)
T 2r9u_A 79 KLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLY 113 (174)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECC
T ss_pred CcchhhEEECCCCccceeCHHHhccccCCCEEEeC
Confidence 9999999999999998 3446788888874
No 63
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.32 E-value=4.4e-12 Score=94.30 Aligned_cols=97 Identities=29% Similarity=0.255 Sum_probs=82.8
Q ss_pred CCEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc------------cccccccCCccccCCcCCCEEe
Q 047948 58 GRVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI------------TNKLSGQIPSEIGLLTHLTVLH 125 (171)
Q Consensus 58 ~~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~------------~n~l~g~~p~~~~~l~~L~~L~ 125 (171)
.+++.|+|++|.++...+. .|..++.|+.|++++|.+++..+..+ .|++. .+|..+..+++|++|+
T Consensus 64 ~~L~~L~L~~N~l~~i~~~-~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~ 141 (229)
T 3e6j_A 64 INLKELYLGSNQLGALPVG-VFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLA 141 (229)
T ss_dssp TTCCEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEE
T ss_pred cCCcEEECCCCCCCCcChh-hcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEE
Confidence 3789999999999744334 67899999999999999987655443 67877 7888999999999999
Q ss_pred cccCcccccCChhhhCccccCceeccccccc
Q 047948 126 ISRNQLNGSIPQEVGQLTFLNHLILDLIFLI 156 (171)
Q Consensus 126 ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~ 156 (171)
+++|++++..+..+..+++|++|++++|++.
T Consensus 142 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 142 LDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred CCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 9999999666667899999999999999987
No 64
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.32 E-value=7.8e-12 Score=97.44 Aligned_cols=107 Identities=21% Similarity=0.274 Sum_probs=78.6
Q ss_pred CCcccceeeCCC----------CCEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc------------
Q 047948 46 PCAWSGIHCNHA----------GRVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI------------ 103 (171)
Q Consensus 46 ~c~w~gv~c~~~----------~~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~------------ 103 (171)
.|.|+.+.|... .+++.|++++|.+.+..+. .|..++.|++|++++|.+++..|..+
T Consensus 32 ~c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 32 HCHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKD-DFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp EEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTT-TTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHh-HhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 367888888642 2689999999999876666 79999999999999999987767655
Q ss_pred cccccccCCccccCCcCCCEEecccCcccccCChhhhCccccCceeccccccc
Q 047948 104 TNKLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQEVGQLTFLNHLILDLIFLI 156 (171)
Q Consensus 104 ~n~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~ 156 (171)
.|++. .+|..+. ++|++|++++|++++..+..+.++++|++|++++|.++
T Consensus 111 ~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~ 160 (332)
T 2ft3_A 111 KNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLE 160 (332)
T ss_dssp SSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCB
T ss_pred CCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccc
Confidence 45555 4555443 67777777777777444445677777777777777664
No 65
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.32 E-value=4.8e-12 Score=104.77 Aligned_cols=97 Identities=23% Similarity=0.305 Sum_probs=58.7
Q ss_pred CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc------------cccccccCCccccCCcCCCEEec
Q 047948 59 RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI------------TNKLSGQIPSEIGLLTHLTVLHI 126 (171)
Q Consensus 59 ~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~------------~n~l~g~~p~~~~~l~~L~~L~l 126 (171)
++++|++++|.+++..+. .|..++.|++|++++|.+++..|..+ .|++.+..+..++.+++|++|++
T Consensus 53 ~L~~L~Ls~n~i~~i~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 131 (570)
T 2z63_A 53 ELQVLDLSRCEIQTIEDG-AYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNV 131 (570)
T ss_dssp SCCEEECTTCCCCEECTT-TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEEC
T ss_pred CceEEECCCCcCCccCcc-cccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEec
Confidence 456666666666544444 56666666666666666655444433 45555433334666667777777
Q ss_pred ccCcccc-cCChhhhCccccCceeccccccc
Q 047948 127 SRNQLNG-SIPQEVGQLTFLNHLILDLIFLI 156 (171)
Q Consensus 127 s~N~l~g-~~P~~~~~l~~L~~L~Ls~N~l~ 156 (171)
++|.+++ .+|..++++++|++|++++|+++
T Consensus 132 ~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~ 162 (570)
T 2z63_A 132 AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162 (570)
T ss_dssp CSSCCCCCCCCGGGGGCTTCCEEECTTSCCC
T ss_pred CCCccceecChhhhcccCCCCEEeCcCCccc
Confidence 7776665 35666777777777777777665
No 66
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.32 E-value=5.6e-12 Score=100.25 Aligned_cols=97 Identities=22% Similarity=0.142 Sum_probs=66.2
Q ss_pred CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc------------cccccccCCccccCCcCCCEEec
Q 047948 59 RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI------------TNKLSGQIPSEIGLLTHLTVLHI 126 (171)
Q Consensus 59 ~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~------------~n~l~g~~p~~~~~l~~L~~L~l 126 (171)
++++|++++|.+++..+. .|..++.|++|++++|.+.+..|..+ +|++....+..+..+++|++|++
T Consensus 70 ~L~~L~L~~n~i~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 148 (390)
T 3o6n_A 70 QVELLNLNDLQIEEIDTY-AFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSM 148 (390)
T ss_dssp CCSEEECTTSCCCEECTT-TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cCcEEECCCCcccccChh-hccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEEC
Confidence 466677777777655555 67777777777777777776655543 56665332233567777777777
Q ss_pred ccCcccccCChhhhCccccCceeccccccc
Q 047948 127 SRNQLNGSIPQEVGQLTFLNHLILDLIFLI 156 (171)
Q Consensus 127 s~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~ 156 (171)
++|++++..|..+..+++|++|++++|+++
T Consensus 149 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 178 (390)
T 3o6n_A 149 SNNNLERIEDDTFQATTSLQNLQLSSNRLT 178 (390)
T ss_dssp CSSCCCBCCTTTTSSCTTCCEEECCSSCCS
T ss_pred CCCccCccChhhccCCCCCCEEECCCCcCC
Confidence 777777666666777777777777777776
No 67
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.31 E-value=3.4e-12 Score=92.66 Aligned_cols=106 Identities=20% Similarity=0.192 Sum_probs=89.4
Q ss_pred CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc------------cccccccCCccccCCcCCCEEec
Q 047948 59 RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI------------TNKLSGQIPSEIGLLTHLTVLHI 126 (171)
Q Consensus 59 ~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~------------~n~l~g~~p~~~~~l~~L~~L~l 126 (171)
+++.+++++|.+. .++. +..+++|+.|++++|.+... ..+ +|++++..|..++.+++|++|++
T Consensus 45 ~L~~L~l~~n~i~-~l~~--l~~l~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 119 (197)
T 4ezg_A 45 SLTYITLANINVT-DLTG--IEYAHNIKDLTINNIHATNY--NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119 (197)
T ss_dssp TCCEEEEESSCCS-CCTT--GGGCTTCSEEEEESCCCSCC--GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred CccEEeccCCCcc-ChHH--HhcCCCCCEEEccCCCCCcc--hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence 6899999999998 5554 88899999999999976532 222 78888888888999999999999
Q ss_pred ccCcccccCChhhhCccccCceeccccc-cc----cccchhhhccccc
Q 047948 127 SRNQLNGSIPQEVGQLTFLNHLILDLIF-LI----FWMVQSLVLLAIW 169 (171)
Q Consensus 127 s~N~l~g~~P~~~~~l~~L~~L~Ls~N~-l~----~~~~~~L~~L~l~ 169 (171)
++|++++..|..+..+++|++|++++|+ ++ ...+++|+.|++.
T Consensus 120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~ 167 (197)
T 4ezg_A 120 SHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQ 167 (197)
T ss_dssp CSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECT
T ss_pred cCCccCcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECC
Confidence 9999998889999999999999999998 65 4556778888774
No 68
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.31 E-value=3.3e-12 Score=103.98 Aligned_cols=109 Identities=21% Similarity=0.197 Sum_probs=74.1
Q ss_pred CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc------------cccccccCCccccCCcCCCEEec
Q 047948 59 RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI------------TNKLSGQIPSEIGLLTHLTVLHI 126 (171)
Q Consensus 59 ~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~------------~n~l~g~~p~~~~~l~~L~~L~l 126 (171)
++++|+|++|.+++..|. .|..++.|++|++++|.+....+..+ .|++.+..|..+..+++|+.|++
T Consensus 57 ~L~~L~L~~n~i~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 135 (477)
T 2id5_A 57 HLEELELNENIVSAVEPG-AFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEV 135 (477)
T ss_dssp TCCEEECTTSCCCEECTT-TTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEE
T ss_pred CCCEEECCCCccCEeChh-hhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEEC
Confidence 677888888887766666 77778888888888877775443332 56666666666777777777777
Q ss_pred ccCcccccCChhhhCccccCceeccccccc------cccchhhhcccc
Q 047948 127 SRNQLNGSIPQEVGQLTFLNHLILDLIFLI------FWMVQSLVLLAI 168 (171)
Q Consensus 127 s~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~------~~~~~~L~~L~l 168 (171)
++|.+++..|..|.++++|++|++++|+++ ...+++|+.|++
T Consensus 136 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 183 (477)
T 2id5_A 136 GDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRL 183 (477)
T ss_dssp CCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEE
T ss_pred CCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeC
Confidence 777777666666777777777777777665 223445555544
No 69
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.31 E-value=2.9e-12 Score=106.03 Aligned_cols=111 Identities=21% Similarity=0.178 Sum_probs=74.5
Q ss_pred CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc------------ccccc-ccCCccccCCcCCCEEe
Q 047948 59 RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI------------TNKLS-GQIPSEIGLLTHLTVLH 125 (171)
Q Consensus 59 ~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~------------~n~l~-g~~p~~~~~l~~L~~L~ 125 (171)
+++.|++++|.+.+..+...+..++.|+.|++++|.+.+..|..+ +|.+. +.+|..+..+++|+.|+
T Consensus 397 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~ 476 (570)
T 2z63_A 397 QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD 476 (570)
T ss_dssp TCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEE
T ss_pred CCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEE
Confidence 455555555555544442246667777777777777766655444 56665 56777777788888888
Q ss_pred cccCcccccCChhhhCccccCceeccccccc------cccchhhhccccc
Q 047948 126 ISRNQLNGSIPQEVGQLTFLNHLILDLIFLI------FWMVQSLVLLAIW 169 (171)
Q Consensus 126 ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~------~~~~~~L~~L~l~ 169 (171)
+++|++++..|..+.++++|++|++++|+++ +..+++|+.|++.
T Consensus 477 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 526 (570)
T 2z63_A 477 LSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLH 526 (570)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred CCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEec
Confidence 8888888777777778888888888888776 2334566666664
No 70
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.31 E-value=4.5e-12 Score=99.30 Aligned_cols=97 Identities=22% Similarity=0.296 Sum_probs=75.1
Q ss_pred CCcccceeeCCC------------CCEEEEEcCC-CccceecCCCCCCCCCCCcEEEeecCcccccccccccccccccCC
Q 047948 46 PCAWSGIHCNHA------------GRVVGINLTS-MSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQITNKLSGQIP 112 (171)
Q Consensus 46 ~c~w~gv~c~~~------------~~v~~L~l~~-~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~~n~l~g~~p 112 (171)
.|.|..|.|... .+++.|+|++ |.+++..+. .|..|++|+.|+|++|++++ ..|
T Consensus 7 ~C~~~~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~-~~~~l~~L~~L~l~~N~l~~------------~~~ 73 (347)
T 2ifg_A 7 PHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELR-DLRGLGELRNLTIVKSGLRF------------VAP 73 (347)
T ss_dssp CSSSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGG-GSCSCCCCSEEECCSSCCCE------------ECT
T ss_pred cccCCEEEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChh-HhccccCCCEEECCCCccce------------eCH
Confidence 388888888754 1488888986 888866556 78888999999999888774 344
Q ss_pred ccccCCcCCCEEecccCcccccCChhhhCccccCceeccccccc
Q 047948 113 SEIGLLTHLTVLHISRNQLNGSIPQEVGQLTFLNHLILDLIFLI 156 (171)
Q Consensus 113 ~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~ 156 (171)
..|..+++|+.|+|++|+|++..|..+..++ |++|+|.+|++.
T Consensus 74 ~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 74 DAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp TGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred HHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 6788899999999999999954444455555 999999999887
No 71
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.31 E-value=6.6e-12 Score=93.54 Aligned_cols=107 Identities=16% Similarity=0.169 Sum_probs=75.2
Q ss_pred CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCc-ccccccccc------------c-ccccccCCccccCCcCCCEE
Q 047948 59 RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNE-LFYIILPQI------------T-NKLSGQIPSEIGLLTHLTVL 124 (171)
Q Consensus 59 ~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~-l~g~~p~~~------------~-n~l~g~~p~~~~~l~~L~~L 124 (171)
.++.|++++|++++..+. .|..++.|+.|++++|. ++...+..+ + |++++..+..|..+++|++|
T Consensus 32 ~l~~L~l~~n~l~~i~~~-~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSH-AFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TCCEEEEESCCCSEECTT-TTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred cccEEEEeCCcceEECHH-HccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 688888888888865555 78888889999998886 665444333 4 67776655677788888888
Q ss_pred ecccCcccccCChhhhCccccC---ceecccc-ccc------cccchhhh-cccc
Q 047948 125 HISRNQLNGSIPQEVGQLTFLN---HLILDLI-FLI------FWMVQSLV-LLAI 168 (171)
Q Consensus 125 ~ls~N~l~g~~P~~~~~l~~L~---~L~Ls~N-~l~------~~~~~~L~-~L~l 168 (171)
++++|++++ +|. +..+++|+ +|++++| .++ +..+++|+ .|++
T Consensus 111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l 163 (239)
T 2xwt_C 111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKL 163 (239)
T ss_dssp EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEEC
T ss_pred eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEc
Confidence 888887774 665 66666666 7777777 665 23344555 5555
No 72
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.31 E-value=1.3e-12 Score=103.86 Aligned_cols=109 Identities=22% Similarity=0.178 Sum_probs=90.1
Q ss_pred CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc------------cccccccCCccccCCcCCCEEec
Q 047948 59 RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI------------TNKLSGQIPSEIGLLTHLTVLHI 126 (171)
Q Consensus 59 ~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~------------~n~l~g~~p~~~~~l~~L~~L~l 126 (171)
+++.+++.++.+. .+|...+..++.|++|++++|.+.+..+..+ +|.+.+..|..++.+++|++|++
T Consensus 46 ~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 124 (390)
T 3o6n_A 46 NQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 124 (390)
T ss_dssp CCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEEC
Confidence 6788999999887 5665246889999999999999987766555 68888877888899999999999
Q ss_pred ccCcccccCChh-hhCccccCceeccccccc------cccchhhhccccc
Q 047948 127 SRNQLNGSIPQE-VGQLTFLNHLILDLIFLI------FWMVQSLVLLAIW 169 (171)
Q Consensus 127 s~N~l~g~~P~~-~~~l~~L~~L~Ls~N~l~------~~~~~~L~~L~l~ 169 (171)
++|+++ .+|.. +.++++|++|++++|+++ +..+++|++|++.
T Consensus 125 ~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 173 (390)
T 3o6n_A 125 ERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLS 173 (390)
T ss_dssp CSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECC
T ss_pred CCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECC
Confidence 999999 66655 688999999999999987 3445778888774
No 73
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.31 E-value=6.9e-13 Score=115.84 Aligned_cols=110 Identities=17% Similarity=0.153 Sum_probs=87.3
Q ss_pred CCEEEEEcCCCccce-----------------ecCCCCCC--CCCCCcEEEeecCcccccccccc------------ccc
Q 047948 58 GRVVGINLTSMSLNG-----------------TLLEFPFS--SFPHLAYLVLYNNELFYIILPQI------------TNK 106 (171)
Q Consensus 58 ~~v~~L~l~~~~l~~-----------------~~p~~~l~--~L~~L~~L~l~~n~l~g~~p~~~------------~n~ 106 (171)
.+++.|+|++|.+++ .+|. .+. .++.|+.|++++|.+.+.+|..+ .|+
T Consensus 448 ~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~-~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~ 526 (876)
T 4ecn_A 448 TKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENE-ELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNR 526 (876)
T ss_dssp TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTS-CCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCT
T ss_pred CCCCEEECcCCcCCCCcccccccccccccccccCCh-hhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCC
Confidence 478999999999998 3888 777 89999999999999998888766 676
Q ss_pred -ccc-cCCccccCCc-------CCCEEecccCcccccCCh--hhhCccccCceeccccccc----cccchhhhccccc
Q 047948 107 -LSG-QIPSEIGLLT-------HLTVLHISRNQLNGSIPQ--EVGQLTFLNHLILDLIFLI----FWMVQSLVLLAIW 169 (171)
Q Consensus 107 -l~g-~~p~~~~~l~-------~L~~L~ls~N~l~g~~P~--~~~~l~~L~~L~Ls~N~l~----~~~~~~L~~L~l~ 169 (171)
++| .+|..++.++ +|+.|++++|+++ .+|. .++++++|++|+|++|+++ +..+++|+.|++.
T Consensus 527 ~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls 603 (876)
T 4ecn_A 527 GISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLD 603 (876)
T ss_dssp TSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCCBCCCCCTTSEESEEECC
T ss_pred CcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcccchhhcCCCcceEEECc
Confidence 888 7887666555 8888888888888 8887 7888888888888888776 3334566666663
No 74
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.30 E-value=5.2e-12 Score=105.30 Aligned_cols=100 Identities=22% Similarity=0.280 Sum_probs=87.0
Q ss_pred CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc------------cccccccCCccccCCcCCCEEec
Q 047948 59 RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI------------TNKLSGQIPSEIGLLTHLTVLHI 126 (171)
Q Consensus 59 ~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~------------~n~l~g~~p~~~~~l~~L~~L~l 126 (171)
++++|+|++|.+++..+. .|.+|++|++|++++|++++..+..+ .|++++..+..|+.+++|++|++
T Consensus 77 ~L~~L~Ls~N~i~~i~~~-~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~L 155 (635)
T 4g8a_A 77 ELQVLDLSRCEIQTIEDG-AYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNV 155 (635)
T ss_dssp TCCEEECTTCCCCEECTT-TTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCCcChh-HhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeecc
Confidence 799999999999965555 89999999999999999987666554 78888776677999999999999
Q ss_pred ccCcccc-cCChhhhCccccCceecccccccccc
Q 047948 127 SRNQLNG-SIPQEVGQLTFLNHLILDLIFLIFWM 159 (171)
Q Consensus 127 s~N~l~g-~~P~~~~~l~~L~~L~Ls~N~l~~~~ 159 (171)
++|.+++ .+|..++.+++|++|++++|+++...
T Consensus 156 s~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 189 (635)
T 4g8a_A 156 AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 189 (635)
T ss_dssp CSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEEC
T ss_pred ccCccccCCCchhhccchhhhhhcccCccccccc
Confidence 9999985 57888999999999999999998433
No 75
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.29 E-value=1.2e-11 Score=88.04 Aligned_cols=105 Identities=24% Similarity=0.179 Sum_probs=84.3
Q ss_pred EEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc------------cccccccCCccccCCcCCCEEeccc
Q 047948 61 VGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI------------TNKLSGQIPSEIGLLTHLTVLHISR 128 (171)
Q Consensus 61 ~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~------------~n~l~g~~p~~~~~l~~L~~L~ls~ 128 (171)
+.+++++++++ .+|. .+ .+.|+.|++++|.+.+..+..+ +|++++..+..+..+++|++|++++
T Consensus 10 ~~l~~~~~~l~-~~p~-~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 10 TEIRCNSKGLT-SVPT-GI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TEEECCSSCCS-SCCT-TC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEecCCCCc-cCCC-CC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 67889999887 5555 44 3689999999999987655443 6888876666688999999999999
Q ss_pred CcccccCChhhhCccccCceeccccccc------cccchhhhccccc
Q 047948 129 NQLNGSIPQEVGQLTFLNHLILDLIFLI------FWMVQSLVLLAIW 169 (171)
Q Consensus 129 N~l~g~~P~~~~~l~~L~~L~Ls~N~l~------~~~~~~L~~L~l~ 169 (171)
|++++..+..+..+++|++|++++|+++ +..+++|+.|++.
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 132 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLH 132 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEec
Confidence 9999666667889999999999999998 2345678888774
No 76
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.29 E-value=1.6e-12 Score=106.75 Aligned_cols=109 Identities=23% Similarity=0.210 Sum_probs=77.0
Q ss_pred CCEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccc-------------------cc---------cccccc
Q 047948 58 GRVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILP-------------------QI---------TNKLSG 109 (171)
Q Consensus 58 ~~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~-------------------~~---------~n~l~g 109 (171)
.+++.|+|++|.+++..+ +..++.|+.|++++|.+++..+. .+ +|.+++
T Consensus 58 ~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~l~~~~~~~l~~L~~L~L~~N~l~~ 134 (487)
T 3oja_A 58 TKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITM 134 (487)
T ss_dssp TTCCEEECTTSCCEEEEE---CTTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCCCEEECCCSSCEEEECCSSCCCS
T ss_pred CCCCEEEeeCCCCCCCcc---cccCCCCCEEEecCCcCCCCCCCCCcCEEECcCCcCCCCCccccCCCCEEECCCCCCCC
Confidence 478999999999886553 67788888888888887754321 00 566776
Q ss_pred cCCccccCCcCCCEEecccCcccccCChhhh-CccccCceeccccccc----cccchhhhccccc
Q 047948 110 QIPSEIGLLTHLTVLHISRNQLNGSIPQEVG-QLTFLNHLILDLIFLI----FWMVQSLVLLAIW 169 (171)
Q Consensus 110 ~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~-~l~~L~~L~Ls~N~l~----~~~~~~L~~L~l~ 169 (171)
..|..++.+++|+.|++++|.+++..|..+. .+++|++|+|++|.++ ...+++|+.|++.
T Consensus 135 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls 199 (487)
T 3oja_A 135 LRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLS 199 (487)
T ss_dssp GGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECC
T ss_pred CCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccccccCCCCCEEECC
Confidence 6677777778888888888888877777665 6777777777777776 2235566666653
No 77
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.29 E-value=5.8e-12 Score=104.72 Aligned_cols=107 Identities=22% Similarity=0.231 Sum_probs=86.2
Q ss_pred CCEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc------------cccccccCCccccCCcCCCEEe
Q 047948 58 GRVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI------------TNKLSGQIPSEIGLLTHLTVLH 125 (171)
Q Consensus 58 ~~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~------------~n~l~g~~p~~~~~l~~L~~L~ 125 (171)
.+++.|++++|.+++..+. .|..++.|++|++++|.+++..|..+ +|+++ .+|.. .+++|++|+
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~ 127 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMP-DISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLD 127 (562)
T ss_dssp TTCCEEECCSSCCCCCCGG-GTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEE
T ss_pred CCcCEEECCCCCccccChh-hhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEE
Confidence 4789999999999876666 89999999999999999998777665 67777 56665 789999999
Q ss_pred cccCcccc-cCChhhhCccccCceecccccccc---ccchhh--hcccc
Q 047948 126 ISRNQLNG-SIPQEVGQLTFLNHLILDLIFLIF---WMVQSL--VLLAI 168 (171)
Q Consensus 126 ls~N~l~g-~~P~~~~~l~~L~~L~Ls~N~l~~---~~~~~L--~~L~l 168 (171)
+++|++++ .+|..++++++|++|++++|+++. ..++.| ++|++
T Consensus 128 Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~L 176 (562)
T 3a79_B 128 LSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILL 176 (562)
T ss_dssp CCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGTTSCEEEEEE
T ss_pred CCCCCccccCchHhhcccCcccEEecCCCccccCchhhhhhceeeEEEe
Confidence 99999986 456889999999999999999873 333344 55554
No 78
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.29 E-value=7.5e-12 Score=97.14 Aligned_cols=106 Identities=17% Similarity=0.105 Sum_probs=59.5
Q ss_pred CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc-------------cccccccCCccccCCcCCCEEe
Q 047948 59 RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI-------------TNKLSGQIPSEIGLLTHLTVLH 125 (171)
Q Consensus 59 ~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~-------------~n~l~g~~p~~~~~l~~L~~L~ 125 (171)
+++.|++++|.+++..+. .+..++.|+.|++++|.+.+..+..+ +|.+++. | ....+++|+.|+
T Consensus 121 ~L~~L~l~~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~ 197 (317)
T 3o53_A 121 GKKNIYLANNKITMLRDL-DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLD 197 (317)
T ss_dssp SCEEEECCSSCCCSGGGB-CTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEE
T ss_pred CCCEEECCCCCCCCccch-hhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-c-cccccccCCEEE
Confidence 456666666666654444 56666666666666666665443322 4444433 1 223456666666
Q ss_pred cccCcccccCChhhhCccccCceeccccccc-----cccchhhhcccc
Q 047948 126 ISRNQLNGSIPQEVGQLTFLNHLILDLIFLI-----FWMVQSLVLLAI 168 (171)
Q Consensus 126 ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~-----~~~~~~L~~L~l 168 (171)
+++|+++ .+|+.+..+++|++|++++|+++ ...+++|+.|++
T Consensus 198 Ls~N~l~-~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l 244 (317)
T 3o53_A 198 LSSNKLA-FMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDL 244 (317)
T ss_dssp CCSSCCC-EECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEEC
T ss_pred CCCCcCC-cchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEc
Confidence 6666666 34444666666666666666665 223345555555
No 79
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.28 E-value=7.7e-12 Score=101.46 Aligned_cols=39 Identities=23% Similarity=0.173 Sum_probs=18.7
Q ss_pred CcCCCEEecccCcccccCChhhhCccccCceeccccccc
Q 047948 118 LTHLTVLHISRNQLNGSIPQEVGQLTFLNHLILDLIFLI 156 (171)
Q Consensus 118 l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~ 156 (171)
+++|+.|++++|++++..|..|.++++|++|++++|+++
T Consensus 217 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~ 255 (452)
T 3zyi_A 217 LVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVS 255 (452)
T ss_dssp CTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCC
T ss_pred cccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCc
Confidence 334444444444444444444555555555555555444
No 80
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.27 E-value=1.6e-12 Score=111.71 Aligned_cols=100 Identities=22% Similarity=0.292 Sum_probs=88.0
Q ss_pred CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc------------cccccccCCccccCCcCCCEEec
Q 047948 59 RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI------------TNKLSGQIPSEIGLLTHLTVLHI 126 (171)
Q Consensus 59 ~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~------------~n~l~g~~p~~~~~l~~L~~L~l 126 (171)
.++.|+|++|.+. .+|. .+..++.|+.|+|++|.++ .+|..+ +|.++ .+|..++.+++|++|+|
T Consensus 225 ~L~~L~Ls~n~l~-~l~~-~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L 300 (727)
T 4b8c_D 225 LWHALDLSNLQIF-NISA-NIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYF 300 (727)
T ss_dssp CCCEEECTTSCCS-CCCG-GGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEEC
T ss_pred CCcEEECCCCCCC-CCCh-hhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEEC
Confidence 5778999999988 7777 7889999999999999998 778766 78888 78999999999999999
Q ss_pred ccCcccccCChhhhCccccCceeccccccccccchhh
Q 047948 127 SRNQLNGSIPQEVGQLTFLNHLILDLIFLIFWMVQSL 163 (171)
Q Consensus 127 s~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~~~~~~~L 163 (171)
++|.++ .+|..|+.+++|++|+|++|+|++.++..+
T Consensus 301 ~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~ 336 (727)
T 4b8c_D 301 FDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKIL 336 (727)
T ss_dssp CSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHH
T ss_pred CCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHH
Confidence 999998 899999999999999999999985544433
No 81
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.27 E-value=2.3e-12 Score=105.90 Aligned_cols=106 Identities=21% Similarity=0.280 Sum_probs=71.9
Q ss_pred CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc------------cccccccCCccccCCcCCCEEec
Q 047948 59 RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI------------TNKLSGQIPSEIGLLTHLTVLHI 126 (171)
Q Consensus 59 ~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~------------~n~l~g~~p~~~~~l~~L~~L~l 126 (171)
++++|++++|.+++..+. .|..++.|++|++++|++++..|..+ +|+++ .+|.. .+++|++|++
T Consensus 22 ~L~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L 97 (520)
T 2z7x_B 22 KTTILNISQNYISELWTS-DILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDL 97 (520)
T ss_dssp TCSEEECCSSCCCCCCHH-HHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEEC
T ss_pred cccEEECCCCcccccChh-hccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEec
Confidence 566666666666644444 56666666666666666665555444 45555 35554 7888999999
Q ss_pred ccCcccc-cCChhhhCccccCceecccccccc---ccchhh--hcccc
Q 047948 127 SRNQLNG-SIPQEVGQLTFLNHLILDLIFLIF---WMVQSL--VLLAI 168 (171)
Q Consensus 127 s~N~l~g-~~P~~~~~l~~L~~L~Ls~N~l~~---~~~~~L--~~L~l 168 (171)
++|++++ .+|..++++++|++|++++|+++. ..+++| +.|++
T Consensus 98 ~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~l 145 (520)
T 2z7x_B 98 SFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLL 145 (520)
T ss_dssp CSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGGGGGGGTTSCEEEEEE
T ss_pred cCCccccccchhhhccCCcceEEEecCcccchhhccccccceeeEEEe
Confidence 9999886 578888899999999999988873 333344 55544
No 82
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.27 E-value=9.2e-12 Score=100.69 Aligned_cols=40 Identities=25% Similarity=0.235 Sum_probs=19.4
Q ss_pred CCcCCCEEecccCcccccCChhhhCccccCceeccccccc
Q 047948 117 LLTHLTVLHISRNQLNGSIPQEVGQLTFLNHLILDLIFLI 156 (171)
Q Consensus 117 ~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~ 156 (171)
.+++|+.|++++|++++..|..|.++++|++|++++|+++
T Consensus 205 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~ 244 (440)
T 3zyj_A 205 PLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ 244 (440)
T ss_dssp TCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred CCcccCEEECCCCccCccChhhhccCccCCEEECCCCcee
Confidence 3344444445555555444444555555555555554444
No 83
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.26 E-value=3.4e-12 Score=88.48 Aligned_cols=97 Identities=24% Similarity=0.239 Sum_probs=83.8
Q ss_pred CEEEEEcCCCccc-eecCCCCCCCCCCCcEEEeecCcccccccccccccccccCCccccCCcCCCEEecccCcccccCCh
Q 047948 59 RVVGINLTSMSLN-GTLLEFPFSSFPHLAYLVLYNNELFYIILPQITNKLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQ 137 (171)
Q Consensus 59 ~v~~L~l~~~~l~-~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~~n~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~ 137 (171)
+++.|++++|.++ +.+|. .+..++.|+.|++++|.+++ + ..++.+++|++|++++|.+++.+|.
T Consensus 18 ~l~~L~l~~n~l~~~~~~~-~~~~l~~L~~L~l~~n~l~~-------------~-~~~~~l~~L~~L~Ls~n~i~~~~~~ 82 (149)
T 2je0_A 18 DVKELVLDNSRSNEGKLEG-LTDEFEELEFLSTINVGLTS-------------I-ANLPKLNKLKKLELSDNRVSGGLEV 82 (149)
T ss_dssp GCSEEECTTCBCBTTBCCS-CCTTCTTCCEEECTTSCCCC-------------C-TTCCCCTTCCEEECCSSCCCSCTHH
T ss_pred cCeEEEccCCcCChhHHHH-HHhhcCCCcEEECcCCCCCC-------------c-hhhhcCCCCCEEECCCCcccchHHH
Confidence 6899999999998 78888 88999999999999998863 2 5678899999999999999987998
Q ss_pred hhhCccccCceecccccccc-------ccchhhhcccccc
Q 047948 138 EVGQLTFLNHLILDLIFLIF-------WMVQSLVLLAIWP 170 (171)
Q Consensus 138 ~~~~l~~L~~L~Ls~N~l~~-------~~~~~L~~L~l~~ 170 (171)
.+..+++|++|++++|+++. ..+++|++|++..
T Consensus 83 ~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~ 122 (149)
T 2je0_A 83 LAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFN 122 (149)
T ss_dssp HHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTT
T ss_pred HhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcC
Confidence 88889999999999999883 3456778887753
No 84
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.25 E-value=9.8e-12 Score=103.86 Aligned_cols=109 Identities=17% Similarity=0.114 Sum_probs=63.5
Q ss_pred CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccc-c--ccc------------cccccccCCccccCCcCCCE
Q 047948 59 RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYII-L--PQI------------TNKLSGQIPSEIGLLTHLTV 123 (171)
Q Consensus 59 ~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~-p--~~~------------~n~l~g~~p~~~~~l~~L~~ 123 (171)
+++.|++++|.+.+..+. .+..++.|+.|++++|.+.+.. | ..+ +|++.+..|..++.+++|+.
T Consensus 426 ~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 504 (606)
T 3t6q_A 426 LLKVLNLSHSLLDISSEQ-LFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNH 504 (606)
T ss_dssp TCCEEECTTCCCBTTCTT-TTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred cCCEEECCCCccCCcCHH-HHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCE
Confidence 455555555555544444 5555666666666666655421 1 111 55666666666666666777
Q ss_pred EecccCcccccCChhhhCccccCceecccccccc------ccchhhhccccc
Q 047948 124 LHISRNQLNGSIPQEVGQLTFLNHLILDLIFLIF------WMVQSLVLLAIW 169 (171)
Q Consensus 124 L~ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~~------~~~~~L~~L~l~ 169 (171)
|++++|++++..|..+.+++.| +|++++|++++ ..+++|+.|++.
T Consensus 505 L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 555 (606)
T 3t6q_A 505 VDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLR 555 (606)
T ss_dssp EECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECT
T ss_pred EECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCC
Confidence 7777777766666666666666 66677766662 223455566553
No 85
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.24 E-value=3.3e-12 Score=98.82 Aligned_cols=110 Identities=16% Similarity=0.143 Sum_probs=67.4
Q ss_pred CCEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCccccc--cc-c----cc---------cccccc--cCCc-cccCC
Q 047948 58 GRVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYI--IL-P----QI---------TNKLSG--QIPS-EIGLL 118 (171)
Q Consensus 58 ~~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~--~p-~----~~---------~n~l~g--~~p~-~~~~l 118 (171)
.++++|++++|.+.+..+. .+..++.|++|++++|++.+. ++ . .+ +|+++. ..+. .+..+
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l 223 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCE-QVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAG 223 (310)
T ss_dssp SCCCEEEEECCSSCCCCTT-SCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHT
T ss_pred cCCCEEEeeCCCcchhhHH-HhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcC
Confidence 3788899999998866666 788899999999999987642 11 1 11 455531 1111 13455
Q ss_pred cCCCEEecccCcccccCChhhhCc---cccCceeccccccc---cccchhhhcccc
Q 047948 119 THLTVLHISRNQLNGSIPQEVGQL---TFLNHLILDLIFLI---FWMVQSLVLLAI 168 (171)
Q Consensus 119 ~~L~~L~ls~N~l~g~~P~~~~~l---~~L~~L~Ls~N~l~---~~~~~~L~~L~l 168 (171)
++|++|++++|++++..|+.+..+ ++|++|++++|+++ ...+++|++|++
T Consensus 224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~L~~L~L 279 (310)
T 4glp_A 224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLPAKLRVLDL 279 (310)
T ss_dssp CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCCSCCSCEEC
T ss_pred CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhcCCCCEEEC
Confidence 666666666666665556555554 46666666666665 222345555555
No 86
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.24 E-value=1.2e-11 Score=101.53 Aligned_cols=109 Identities=23% Similarity=0.248 Sum_probs=61.2
Q ss_pred CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccc--cccccc------------cccccccCCcc-ccCC-----
Q 047948 59 RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFY--IILPQI------------TNKLSGQIPSE-IGLL----- 118 (171)
Q Consensus 59 ~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g--~~p~~~------------~n~l~g~~p~~-~~~l----- 118 (171)
+++.|++++|.+++.+|. .+..++.|+.|++++|.+.+ .+|..+ +|.+.+.+|.. +..+
T Consensus 325 ~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~ 403 (520)
T 2z7x_B 325 PFLHLDFSNNLLTDTVFE-NCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLS 403 (520)
T ss_dssp CCCEEECCSSCCCTTTTT-TCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCE
T ss_pred cccEEEeECCccChhhhh-hhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCE
Confidence 456666666666555555 55555566666666555553 222211 34444333322 2222
Q ss_pred -----------------cCCCEEecccCcccccCChhhhCccccCceeccccccc------cccchhhhccccc
Q 047948 119 -----------------THLTVLHISRNQLNGSIPQEVGQLTFLNHLILDLIFLI------FWMVQSLVLLAIW 169 (171)
Q Consensus 119 -----------------~~L~~L~ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~------~~~~~~L~~L~l~ 169 (171)
++|+.|++++|+++ .+|..+..+++|++|++++|+++ ...+++|++|++.
T Consensus 404 L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~ 476 (520)
T 2z7x_B 404 LNMSSNILTDTIFRCLPPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLH 476 (520)
T ss_dssp EECCSSCCCGGGGGSCCTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred EECcCCCCCcchhhhhcccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECc
Confidence 56666666666666 66666667777777777777776 2234456666663
No 87
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.23 E-value=2.1e-11 Score=88.48 Aligned_cols=78 Identities=23% Similarity=0.202 Sum_probs=65.7
Q ss_pred CCEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc------------cccccccCCccccCCcCCCEEe
Q 047948 58 GRVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI------------TNKLSGQIPSEIGLLTHLTVLH 125 (171)
Q Consensus 58 ~~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~------------~n~l~g~~p~~~~~l~~L~~L~ 125 (171)
.+++.|+|++|.+++..+. .|..++.|+.|++++|.+++..|..+ +|.++...+..+..+++|+.|+
T Consensus 54 ~~L~~L~Ls~N~i~~i~~~-~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 132 (193)
T 2wfh_A 54 KHLTLIDLSNNRISTLSNQ-SFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLA 132 (193)
T ss_dssp TTCCEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEE
T ss_pred cCCCEEECCCCcCCEeCHh-HccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEE
Confidence 4789999999999966666 89999999999999999998777655 7888866666788999999999
Q ss_pred cccCcccccCC
Q 047948 126 ISRNQLNGSIP 136 (171)
Q Consensus 126 ls~N~l~g~~P 136 (171)
+++|.+.....
T Consensus 133 L~~N~~~C~c~ 143 (193)
T 2wfh_A 133 IGANPLYCDCN 143 (193)
T ss_dssp CCSSCEECSGG
T ss_pred eCCCCeecCCc
Confidence 99999985433
No 88
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.23 E-value=2e-11 Score=95.01 Aligned_cols=107 Identities=16% Similarity=0.200 Sum_probs=57.8
Q ss_pred EEEEEcCCCccce--ecCCCCCCCCCCCcEEEeecCcccccccccc----------cccccccCCccccCCcCCCEEecc
Q 047948 60 VVGINLTSMSLNG--TLLEFPFSSFPHLAYLVLYNNELFYIILPQI----------TNKLSGQIPSEIGLLTHLTVLHIS 127 (171)
Q Consensus 60 v~~L~l~~~~l~~--~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~----------~n~l~g~~p~~~~~l~~L~~L~ls 127 (171)
++.+++++|.+.. ..+. .+..++.|+.|++++|.++. +|..+ +|++.+..|..+..+++|+.|+++
T Consensus 147 L~~L~l~~n~l~~~~~~~~-~~~~l~~L~~L~l~~n~l~~-l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls 224 (330)
T 1xku_A 147 MIVVELGTNPLKSSGIENG-AFQGMKKLSYIRIADTNITT-IPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLS 224 (330)
T ss_dssp CCEEECCSSCCCGGGBCTT-GGGGCTTCCEEECCSSCCCS-CCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECC
T ss_pred ccEEECCCCcCCccCcChh-hccCCCCcCEEECCCCcccc-CCccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECC
Confidence 4444444444431 2233 44555555555555555542 22221 455655555666666666666666
Q ss_pred cCcccccCChhhhCccccCceeccccccc-----cccchhhhcccc
Q 047948 128 RNQLNGSIPQEVGQLTFLNHLILDLIFLI-----FWMVQSLVLLAI 168 (171)
Q Consensus 128 ~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~-----~~~~~~L~~L~l 168 (171)
+|.+++..+..+..+++|++|++++|+++ ...+++|++|++
T Consensus 225 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l 270 (330)
T 1xku_A 225 FNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYL 270 (330)
T ss_dssp SSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEEC
T ss_pred CCcCceeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEEC
Confidence 66666555556666666666666666665 223345555555
No 89
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.22 E-value=9.2e-12 Score=105.42 Aligned_cols=110 Identities=20% Similarity=0.141 Sum_probs=76.0
Q ss_pred CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc------------cccccccCCccccCCcCCCEEec
Q 047948 59 RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI------------TNKLSGQIPSEIGLLTHLTVLHI 126 (171)
Q Consensus 59 ~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~------------~n~l~g~~p~~~~~l~~L~~L~l 126 (171)
++++|++++|.+.+..|. .+..++.|++|++++|.++...+..+ .|++.+..|..++.+++|++|++
T Consensus 50 ~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 128 (680)
T 1ziw_A 50 QLTSLDVGFNTISKLEPE-LCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDL 128 (680)
T ss_dssp TCSEEECCSSCCCCCCTT-HHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEEC
T ss_pred cCcEEECCCCccCccCHH-HHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEEC
Confidence 577777777777765565 66777777777777777764433333 56666655567778888888888
Q ss_pred ccCcccccCChhhhCccccCceeccccccccc--------cchhhhccccc
Q 047948 127 SRNQLNGSIPQEVGQLTFLNHLILDLIFLIFW--------MVQSLVLLAIW 169 (171)
Q Consensus 127 s~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~~~--------~~~~L~~L~l~ 169 (171)
++|.+++..|..++++++|++|++++|.+++. ..++|+.|++.
T Consensus 129 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~ 179 (680)
T 1ziw_A 129 SHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELS 179 (680)
T ss_dssp CSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECT
T ss_pred CCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECC
Confidence 88888877777777788888888888877622 12466666663
No 90
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.22 E-value=6.1e-12 Score=97.47 Aligned_cols=98 Identities=18% Similarity=0.118 Sum_probs=53.5
Q ss_pred CCEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccc--cc-----cc---------cccccc--cCCc-cccCC
Q 047948 58 GRVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYII--LP-----QI---------TNKLSG--QIPS-EIGLL 118 (171)
Q Consensus 58 ~~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~--p~-----~~---------~n~l~g--~~p~-~~~~l 118 (171)
.++++|++++|.+.+..+. .+..++.|++|++++|++.+.+ |. .+ +|++++ .++. .+..+
T Consensus 149 ~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l 227 (312)
T 1wwl_A 149 PGLKVLSIAQAHSLNFSCE-QVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAAR 227 (312)
T ss_dssp TTCCEEEEESCSCCCCCTT-TCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTT
T ss_pred CCCcEEEeeCCCCccchHH-HhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcC
Confidence 3567777777777655555 6777777777777777765431 11 11 444442 1221 22345
Q ss_pred cCCCEEecccCcccccCC-hhhhCccccCceeccccccc
Q 047948 119 THLTVLHISRNQLNGSIP-QEVGQLTFLNHLILDLIFLI 156 (171)
Q Consensus 119 ~~L~~L~ls~N~l~g~~P-~~~~~l~~L~~L~Ls~N~l~ 156 (171)
++|++|++++|++++..| ..+..+++|++|++++|+++
T Consensus 228 ~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~ 266 (312)
T 1wwl_A 228 VQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK 266 (312)
T ss_dssp CCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS
T ss_pred CCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC
Confidence 555555555555555443 23344555555555555554
No 91
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.21 E-value=1.3e-11 Score=88.08 Aligned_cols=94 Identities=19% Similarity=0.213 Sum_probs=64.3
Q ss_pred CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccccccccccCCccccCCcCCCEEecccCcccccCCh-
Q 047948 59 RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQITNKLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQ- 137 (171)
Q Consensus 59 ~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~~n~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~- 137 (171)
+++.|++++|.+++. . .+..++.|+.|++++|.+++.. |..+..+++|++|++++|+++ .+|.
T Consensus 43 ~L~~L~Ls~N~l~~~--~-~l~~l~~L~~L~Ls~N~l~~~~------------~~~~~~l~~L~~L~L~~N~i~-~~~~~ 106 (176)
T 1a9n_A 43 QFDAIDFSDNEIRKL--D-GFPLLRRLKTLLVNNNRICRIG------------EGLDQALPDLTELILTNNSLV-ELGDL 106 (176)
T ss_dssp CCSEEECCSSCCCEE--C-CCCCCSSCCEEECCSSCCCEEC------------SCHHHHCTTCCEEECCSCCCC-CGGGG
T ss_pred CCCEEECCCCCCCcc--c-ccccCCCCCEEECCCCcccccC------------cchhhcCCCCCEEECCCCcCC-cchhh
Confidence 678888888887754 3 5777888888888888776321 223366777777777777775 5665
Q ss_pred -hhhCccccCceeccccccc---------cccchhhhcccc
Q 047948 138 -EVGQLTFLNHLILDLIFLI---------FWMVQSLVLLAI 168 (171)
Q Consensus 138 -~~~~l~~L~~L~Ls~N~l~---------~~~~~~L~~L~l 168 (171)
.+..+++|++|++++|+++ ...+++|+.|++
T Consensus 107 ~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~ 147 (176)
T 1a9n_A 107 DPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDF 147 (176)
T ss_dssp GGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETT
T ss_pred HhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCC
Confidence 6777777777777777775 223445666655
No 92
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.21 E-value=8.1e-12 Score=96.60 Aligned_cols=110 Identities=15% Similarity=0.012 Sum_probs=81.3
Q ss_pred CEEEEEcCCCccceecCCCCC--CCCCCCcEEEeecCcccccccc----------cc------cccccccCCccccCCcC
Q 047948 59 RVVGINLTSMSLNGTLLEFPF--SSFPHLAYLVLYNNELFYIILP----------QI------TNKLSGQIPSEIGLLTH 120 (171)
Q Consensus 59 ~v~~L~l~~~~l~~~~p~~~l--~~L~~L~~L~l~~n~l~g~~p~----------~~------~n~l~g~~p~~~~~l~~ 120 (171)
++++|++++|.+.+..|. .+ ..++.|+.|++++|.+.+..+. .+ .|++.+..|..++.+++
T Consensus 92 ~L~~L~l~~n~l~~~~~~-~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 92 RLKELTLEDLKITGTMPP-LPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp CCCEEEEESCCCBSCCCC-CSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred ceeEEEeeCCEeccchhh-hhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 589999999999988888 77 8899999999999999875431 11 77887777778888888
Q ss_pred CCEEecccCccccc--CC--hhhhCccccCceeccccccc--c-------ccchhhhccccc
Q 047948 121 LTVLHISRNQLNGS--IP--QEVGQLTFLNHLILDLIFLI--F-------WMVQSLVLLAIW 169 (171)
Q Consensus 121 L~~L~ls~N~l~g~--~P--~~~~~l~~L~~L~Ls~N~l~--~-------~~~~~L~~L~l~ 169 (171)
|++|++++|++.+. ++ ..+..+++|++|++++|+++ . ..+++|++|++.
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls 232 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLS 232 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECT
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECC
Confidence 99999998887652 22 22356777777777777775 1 123566666663
No 93
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.21 E-value=9e-12 Score=102.85 Aligned_cols=99 Identities=24% Similarity=0.178 Sum_probs=77.9
Q ss_pred CCEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc------------cccccc-cCCccccCCcCCCEE
Q 047948 58 GRVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI------------TNKLSG-QIPSEIGLLTHLTVL 124 (171)
Q Consensus 58 ~~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~------------~n~l~g-~~p~~~~~l~~L~~L 124 (171)
.++++|++++|.+++..+. .|..++.|++|++++|.+.+..|..+ +|.+.+ .+|..++.+++|++|
T Consensus 50 ~~L~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L 128 (549)
T 2z81_A 50 ANLQVLILKSSRINTIEGD-AFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTL 128 (549)
T ss_dssp TTCCEEECTTSCCCEECTT-TTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEE
T ss_pred CcccEEECCCCCcCccChh-hccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEE
Confidence 4788999999998877666 78899999999999998887666534 677775 456778888888888
Q ss_pred ecccCcccccCC-hhhhCccccCceecccccccc
Q 047948 125 HISRNQLNGSIP-QEVGQLTFLNHLILDLIFLIF 157 (171)
Q Consensus 125 ~ls~N~l~g~~P-~~~~~l~~L~~L~Ls~N~l~~ 157 (171)
++++|.+.+.+| ..+.++++|++|++++|++++
T Consensus 129 ~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 162 (549)
T 2z81_A 129 RIGNVETFSEIRRIDFAGLTSLNELEIKALSLRN 162 (549)
T ss_dssp EEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE
T ss_pred ECCCCccccccCHhhhhcccccCeeeccCCcccc
Confidence 888888555665 467888888888888888773
No 94
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.21 E-value=2.9e-11 Score=94.24 Aligned_cols=97 Identities=18% Similarity=0.122 Sum_probs=52.5
Q ss_pred CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccc--cccccc--------------------------------c
Q 047948 59 RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFY--IILPQI--------------------------------T 104 (171)
Q Consensus 59 ~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g--~~p~~~--------------------------------~ 104 (171)
++++|++++|.+.+..+. .+..++.|+.|++++|.+.. ..|..+ +
T Consensus 124 ~L~~L~l~~n~i~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~ 202 (332)
T 2ft3_A 124 SLVELRIHDNRIRKVPKG-VFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDH 202 (332)
T ss_dssp TCCEEECCSSCCCCCCSG-GGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCS
T ss_pred cCCEEECCCCccCccCHh-HhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCC
Confidence 455555555555532222 46667777777777776642 222111 3
Q ss_pred ccccccCCccccCCcCCCEEecccCcccccCChhhhCccccCceeccccccc
Q 047948 105 NKLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQEVGQLTFLNHLILDLIFLI 156 (171)
Q Consensus 105 n~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~ 156 (171)
|.+.+..|..+..+++|+.|++++|++++..|..+..+++|++|++++|+++
T Consensus 203 n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 254 (332)
T 2ft3_A 203 NKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS 254 (332)
T ss_dssp SCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe
Confidence 4444444445555556666666666665544445555555666666655554
No 95
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.21 E-value=3e-11 Score=94.60 Aligned_cols=93 Identities=23% Similarity=0.145 Sum_probs=76.4
Q ss_pred EEEcCCC-ccceecCCCCCCCCCCCcEEEeec-CcccccccccccccccccCCccccCCcCCCEEecccCcccccCChhh
Q 047948 62 GINLTSM-SLNGTLLEFPFSSFPHLAYLVLYN-NELFYIILPQITNKLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQEV 139 (171)
Q Consensus 62 ~L~l~~~-~l~~~~p~~~l~~L~~L~~L~l~~-n~l~g~~p~~~~n~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~ 139 (171)
.++.+++ +++ .+|. +..+++|+.|+|++ |.+.+ ..|..|..+++|+.|+|++|+|++..|..|
T Consensus 12 ~v~~~~~n~l~-~ip~--l~~~~~L~~L~l~~~n~l~~------------~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~ 76 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH--LPGAENLTELYIENQQHLQH------------LELRDLRGLGELRNLTIVKSGLRFVAPDAF 76 (347)
T ss_dssp CEECCSSCCCT-TTTT--SCSCSCCSEEECCSCSSCCE------------ECGGGSCSCCCCSEEECCSSCCCEECTTGG
T ss_pred EEEcCCCCCCC-ccCC--CCCCCCeeEEEccCCCCCCC------------cChhHhccccCCCEEECCCCccceeCHHHh
Confidence 4688888 887 5776 88999999999996 98874 333678999999999999999999888899
Q ss_pred hCccccCceeccccccccccc-----hhhhccccc
Q 047948 140 GQLTFLNHLILDLIFLIFWMV-----QSLVLLAIW 169 (171)
Q Consensus 140 ~~l~~L~~L~Ls~N~l~~~~~-----~~L~~L~l~ 169 (171)
.++++|++|+|++|+|+.... ..|+.|++.
T Consensus 77 ~~l~~L~~L~l~~N~l~~~~~~~~~~~~L~~l~l~ 111 (347)
T 2ifg_A 77 HFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLS 111 (347)
T ss_dssp GSCSCCCEEECCSSCCSCCCSTTTCSCCCCEEECC
T ss_pred cCCcCCCEEeCCCCccceeCHHHcccCCceEEEee
Confidence 999999999999999982211 127777764
No 96
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.20 E-value=2.7e-11 Score=95.30 Aligned_cols=103 Identities=17% Similarity=0.200 Sum_probs=77.7
Q ss_pred CcccceeeCCC----------CCEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc-------------
Q 047948 47 CAWSGIHCNHA----------GRVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI------------- 103 (171)
Q Consensus 47 c~w~gv~c~~~----------~~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~------------- 103 (171)
|.+..|.|... .++++|+|++|+++ .+|...|.+|++|++|++++|.+.+.+|...
T Consensus 9 C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 9 CSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp EETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCS-EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred eeCCEEEecCCCCCccCcCcCCCCCEEEccCCcCC-CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 67888889642 26899999999998 5665379999999999999999877666432
Q ss_pred -cccccccCCccccCCcCCCEEecccCcccccCChhhhCccccCceec
Q 047948 104 -TNKLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQEVGQLTFLNHLIL 150 (171)
Q Consensus 104 -~n~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~L~L 150 (171)
.|++....|..|..+++|++|++++|++++..+..+....++..+++
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l 135 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDI 135 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEE
T ss_pred cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhh
Confidence 57788777788899999999999999988544434433334444444
No 97
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.20 E-value=2.8e-11 Score=100.59 Aligned_cols=109 Identities=22% Similarity=0.251 Sum_probs=62.3
Q ss_pred CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccc--cccccc------------cccccccCCcc-ccCC-----
Q 047948 59 RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFY--IILPQI------------TNKLSGQIPSE-IGLL----- 118 (171)
Q Consensus 59 ~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g--~~p~~~------------~n~l~g~~p~~-~~~l----- 118 (171)
+++.|++++|.+++.+|. .+..++.|+.|++++|.+++ .+|..+ +|++.+.+|.. +..+
T Consensus 354 ~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~ 432 (562)
T 3a79_B 354 SFTFLNFTQNVFTDSVFQ-GCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILV 432 (562)
T ss_dssp CCCEEECCSSCCCTTTTT-TCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCE
T ss_pred CceEEECCCCccccchhh-hhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCE
Confidence 455666666665554554 55555555555555555554 112211 34444433321 2222
Q ss_pred -----------------cCCCEEecccCcccccCChhhhCccccCceeccccccc------cccchhhhccccc
Q 047948 119 -----------------THLTVLHISRNQLNGSIPQEVGQLTFLNHLILDLIFLI------FWMVQSLVLLAIW 169 (171)
Q Consensus 119 -----------------~~L~~L~ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~------~~~~~~L~~L~l~ 169 (171)
++|+.|++++|+++ .+|..+..+++|++|++++|+++ ...+++|+.|++.
T Consensus 433 L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~ 505 (562)
T 3a79_B 433 LNLSSNMLTGSVFRCLPPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLH 505 (562)
T ss_dssp EECCSSCCCGGGGSSCCTTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECC
T ss_pred EECCCCCCCcchhhhhcCcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEec
Confidence 56777777777777 67776677788888888888777 2334566666664
No 98
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.19 E-value=1.7e-11 Score=96.25 Aligned_cols=97 Identities=25% Similarity=0.224 Sum_probs=67.5
Q ss_pred CCEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc------------cccccccCCc--cccCCcCCCE
Q 047948 58 GRVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI------------TNKLSGQIPS--EIGLLTHLTV 123 (171)
Q Consensus 58 ~~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~------------~n~l~g~~p~--~~~~l~~L~~ 123 (171)
.+++.|++++|.+++..+. .|..++.|++|++++|.+++..+..+ +|++.+ +|. .+..+++|++
T Consensus 76 ~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~~l~~L~~ 153 (353)
T 2z80_A 76 VNLQALVLTSNGINTIEED-SFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKT-LGETSLFSHLTKLQI 153 (353)
T ss_dssp TTCCEEECTTSCCCEECTT-TTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSS-SCSSCSCTTCTTCCE
T ss_pred CCCCEEECCCCccCccCHh-hcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcc-cCchhhhccCCCCcE
Confidence 3788889998888876666 78888888888888888875443322 566654 333 5667777777
Q ss_pred EecccCc-ccccCChhhhCccccCceeccccccc
Q 047948 124 LHISRNQ-LNGSIPQEVGQLTFLNHLILDLIFLI 156 (171)
Q Consensus 124 L~ls~N~-l~g~~P~~~~~l~~L~~L~Ls~N~l~ 156 (171)
|++++|+ +++..|..+.++++|++|++++|+++
T Consensus 154 L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~ 187 (353)
T 2z80_A 154 LRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ 187 (353)
T ss_dssp EEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC
T ss_pred EECCCCccccccCHHHccCCCCCCEEECCCCCcC
Confidence 7777773 55444556677777777777777665
No 99
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.18 E-value=8.4e-12 Score=104.51 Aligned_cols=114 Identities=24% Similarity=0.309 Sum_probs=76.9
Q ss_pred CCCCCC-----cccce-eeCCCCCEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc---------ccc
Q 047948 42 TKISPC-----AWSGI-HCNHAGRVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI---------TNK 106 (171)
Q Consensus 42 ~~~~~c-----~w~gv-~c~~~~~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~---------~n~ 106 (171)
...++| .|.|+ .|.. ++++.|++++|.+++ +|. .+ ++.|+.|++++|.++ .+|..+ +|+
T Consensus 38 ~~~~~~~~~~~~~~~l~~C~~-~~L~~L~Ls~n~L~~-lp~-~l--~~~L~~L~Ls~N~l~-~ip~~l~~L~~L~Ls~N~ 111 (571)
T 3cvr_A 38 KQALPGENRNEAVSLLKECLI-NQFSELQLNRLNLSS-LPD-NL--PPQITVLEITQNALI-SLPELPASLEYLDACDNR 111 (571)
T ss_dssp TTCCTTCCHHHHHHHHHHHHH-TTCSEEECCSSCCSC-CCS-CC--CTTCSEEECCSSCCS-CCCCCCTTCCEEECCSSC
T ss_pred ccCCccccccchhhhcccccc-CCccEEEeCCCCCCc-cCH-hH--cCCCCEEECcCCCCc-ccccccCCCCEEEccCCC
Confidence 355677 69999 6754 478999999999886 776 55 367888888888887 455222 667
Q ss_pred ccccCCccccCCcCCCEEecccCcccccCChhhhCccccCceeccccccc--cccchhhhccccc
Q 047948 107 LSGQIPSEIGLLTHLTVLHISRNQLNGSIPQEVGQLTFLNHLILDLIFLI--FWMVQSLVLLAIW 169 (171)
Q Consensus 107 l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~--~~~~~~L~~L~l~ 169 (171)
+++ +|. +.. +|+.|++++|++++ +|. .+++|++|++++|+|+ ...+++|+.|++.
T Consensus 112 l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~lp~~l~~L~~L~Ls 168 (571)
T 3cvr_A 112 LST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTMLPELPTSLEVLSVR 168 (571)
T ss_dssp CSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCCCCCCTTCCEEECC
T ss_pred CCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCcCCCcCCCcCEEECC
Confidence 776 665 544 77777777777774 665 4566777777777666 2233455555553
No 100
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.18 E-value=3.1e-11 Score=89.89 Aligned_cols=95 Identities=16% Similarity=0.126 Sum_probs=48.8
Q ss_pred CEEEEEcCCCc-cceecCCCCCCCCCCCcEEEeec-Ccccccccccc------------cccccccCCccccCCcCCC--
Q 047948 59 RVVGINLTSMS-LNGTLLEFPFSSFPHLAYLVLYN-NELFYIILPQI------------TNKLSGQIPSEIGLLTHLT-- 122 (171)
Q Consensus 59 ~v~~L~l~~~~-l~~~~p~~~l~~L~~L~~L~l~~-n~l~g~~p~~~------------~n~l~g~~p~~~~~l~~L~-- 122 (171)
+++.|++++|. ++...+. .|..++.|++|++++ |.+++..+..+ +|.+++ +|. +..+++|+
T Consensus 56 ~L~~L~l~~n~~l~~i~~~-~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L 132 (239)
T 2xwt_C 56 NISRIYVSIDVTLQQLESH-SFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIF 132 (239)
T ss_dssp TCCEEEEECCSSCCEECTT-TEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSE
T ss_pred CCcEEeCCCCCCcceeCHh-HcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccc
Confidence 56666666665 5533333 556666666666665 66654433332 444443 333 44445554
Q ss_pred -EEecccC-cccccCChhhhCccccC-ceeccccccc
Q 047948 123 -VLHISRN-QLNGSIPQEVGQLTFLN-HLILDLIFLI 156 (171)
Q Consensus 123 -~L~ls~N-~l~g~~P~~~~~l~~L~-~L~Ls~N~l~ 156 (171)
+|++++| ++++..+..|.++++|+ +|++++|+++
T Consensus 133 ~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~ 169 (239)
T 2xwt_C 133 FILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT 169 (239)
T ss_dssp EEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC
T ss_pred cEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc
Confidence 5555555 55533333455555555 5555555544
No 101
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.17 E-value=5.6e-11 Score=103.37 Aligned_cols=109 Identities=18% Similarity=0.102 Sum_probs=91.5
Q ss_pred CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc------------cccccccCCccccCCcCCCEEec
Q 047948 59 RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI------------TNKLSGQIPSEIGLLTHLTVLHI 126 (171)
Q Consensus 59 ~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~------------~n~l~g~~p~~~~~l~~L~~L~l 126 (171)
+++.|++++|.+.+..+. .+..++.|+.|++++|.+.+..|..+ .|.+.+..|..+..+++|+.|++
T Consensus 267 ~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 345 (844)
T 3j0a_A 267 SVRHLDLSHGFVFSLNSR-VFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDL 345 (844)
T ss_dssp CCCEEECTTCCCCEECSC-CSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEEC
T ss_pred CccEEECCCCcccccChh-hhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEEC
Confidence 689999999999977777 89999999999999999998777655 68888777888899999999999
Q ss_pred ccCcccccCChhhhCccccCceeccccccc-cccchhhhcccc
Q 047948 127 SRNQLNGSIPQEVGQLTFLNHLILDLIFLI-FWMVQSLVLLAI 168 (171)
Q Consensus 127 s~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~-~~~~~~L~~L~l 168 (171)
++|.+++..+..|..+++|++|++++|.++ ...+++|+.|++
T Consensus 346 ~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l 388 (844)
T 3j0a_A 346 QKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFL 388 (844)
T ss_dssp CSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEE
T ss_pred CCCCCCccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhcc
Confidence 999998777777888999999999999887 334566666655
No 102
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.16 E-value=9.4e-12 Score=96.60 Aligned_cols=108 Identities=24% Similarity=0.244 Sum_probs=70.0
Q ss_pred CCEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccc-cc---------------------------cccccc
Q 047948 58 GRVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILP-QI---------------------------TNKLSG 109 (171)
Q Consensus 58 ~~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~-~~---------------------------~n~l~g 109 (171)
.+++.|++++|.+++..+ +..++.|++|++++|.+++..+. .+ .|++++
T Consensus 58 ~~L~~L~Ls~n~l~~~~~---~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~l~~ 134 (317)
T 3o53_A 58 TKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITM 134 (317)
T ss_dssp TTCCEEECTTSCCEEEEE---ETTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCSEEEECCCSSCEEEECCSSCCCS
T ss_pred CcCCEEECCCCcCCcchh---hhhcCCCCEEECcCCccccccCCCCcCEEECCCCccCCcCccccCCCCEEECCCCCCCC
Confidence 479999999999986543 77888999999999988764321 11 455555
Q ss_pred cCCccccCCcCCCEEecccCcccccCChhhh-CccccCceeccccccc----cccchhhhcccc
Q 047948 110 QIPSEIGLLTHLTVLHISRNQLNGSIPQEVG-QLTFLNHLILDLIFLI----FWMVQSLVLLAI 168 (171)
Q Consensus 110 ~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~-~l~~L~~L~Ls~N~l~----~~~~~~L~~L~l 168 (171)
..|..++.+++|++|++++|.+++..|..+. .+++|++|++++|+++ ...+++|++|++
T Consensus 135 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~l~~L~~L~L 198 (317)
T 3o53_A 135 LRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDL 198 (317)
T ss_dssp GGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEEC
T ss_pred ccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccccccccccCCEEEC
Confidence 4455566666677777777776655555543 5566666666666665 222455555555
No 103
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.15 E-value=5.4e-11 Score=83.93 Aligned_cols=87 Identities=18% Similarity=0.036 Sum_probs=72.6
Q ss_pred CCEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccccccccccCCccccCCcCCCEEecccCcccccCC-
Q 047948 58 GRVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQITNKLSGQIPSEIGLLTHLTVLHISRNQLNGSIP- 136 (171)
Q Consensus 58 ~~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~~n~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P- 136 (171)
.+++.|++++|.+.+.+|. .+..++.|+.|++++|.+++.. .+..+..+++|+.|++++|.+++..+
T Consensus 71 ~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~-----------~~~~l~~l~~L~~L~l~~N~l~~~~~~ 138 (168)
T 2ell_A 71 PKLKKLELSENRIFGGLDM-LAEKLPNLTHLNLSGNKLKDIS-----------TLEPLKKLECLKSLDLFNCEVTNLNDY 138 (168)
T ss_dssp SSCCEEEEESCCCCSCCCH-HHHHCTTCCEEECBSSSCCSSG-----------GGGGGSSCSCCCEEECCSSGGGTSTTH
T ss_pred CCCCEEECcCCcCchHHHH-HHhhCCCCCEEeccCCccCcch-----------hHHHHhcCCCCCEEEeeCCcCcchHHH
Confidence 3799999999999977766 6667999999999999987321 12568899999999999999995444
Q ss_pred --hhhhCccccCceeccccccc
Q 047948 137 --QEVGQLTFLNHLILDLIFLI 156 (171)
Q Consensus 137 --~~~~~l~~L~~L~Ls~N~l~ 156 (171)
..+..+++|++|++++|.+.
T Consensus 139 ~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 139 RESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp HHHHHTTCSSCCEETTEETTSC
T ss_pred HHHHHHhCccCcEecCCCCChh
Confidence 37899999999999999875
No 104
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.13 E-value=7.1e-11 Score=84.13 Aligned_cols=94 Identities=20% Similarity=0.209 Sum_probs=75.5
Q ss_pred CEEEEEcCCCccceecCCCCCCCCC-CCcEEEeecCcccccccccccccccccCCccccCCcCCCEEecccCcccccCCh
Q 047948 59 RVVGINLTSMSLNGTLLEFPFSSFP-HLAYLVLYNNELFYIILPQITNKLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQ 137 (171)
Q Consensus 59 ~v~~L~l~~~~l~~~~p~~~l~~L~-~L~~L~l~~n~l~g~~p~~~~n~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~ 137 (171)
+++.|++++|.++ .++. +..+. .|+.|++++|.+++ + ..+..+++|++|++++|++++..|.
T Consensus 20 ~L~~L~l~~n~l~-~i~~--~~~~~~~L~~L~Ls~N~l~~-------------~-~~l~~l~~L~~L~Ls~N~l~~~~~~ 82 (176)
T 1a9n_A 20 RDRELDLRGYKIP-VIEN--LGATLDQFDAIDFSDNEIRK-------------L-DGFPLLRRLKTLLVNNNRICRIGEG 82 (176)
T ss_dssp SCEEEECTTSCCC-SCCC--GGGGTTCCSEEECCSSCCCE-------------E-CCCCCCSSCCEEECCSSCCCEECSC
T ss_pred CceEEEeeCCCCc-hhHH--hhhcCCCCCEEECCCCCCCc-------------c-cccccCCCCCEEECCCCcccccCcc
Confidence 6899999999998 4544 55555 99999999999873 2 4678899999999999999954444
Q ss_pred hhhCccccCceeccccccc-------cccchhhhccccc
Q 047948 138 EVGQLTFLNHLILDLIFLI-------FWMVQSLVLLAIW 169 (171)
Q Consensus 138 ~~~~l~~L~~L~Ls~N~l~-------~~~~~~L~~L~l~ 169 (171)
.+..+++|++|++++|+++ ...+++|+.|++.
T Consensus 83 ~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~ 121 (176)
T 1a9n_A 83 LDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCIL 121 (176)
T ss_dssp HHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECC
T ss_pred hhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEec
Confidence 5589999999999999987 2234567777774
No 105
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.13 E-value=4.4e-11 Score=100.30 Aligned_cols=110 Identities=20% Similarity=0.110 Sum_probs=90.8
Q ss_pred CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc------------cccccccCCccccCCcCCCEEec
Q 047948 59 RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI------------TNKLSGQIPSEIGLLTHLTVLHI 126 (171)
Q Consensus 59 ~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~------------~n~l~g~~p~~~~~l~~L~~L~l 126 (171)
+++.+++.++.+. .+|...+..++.|+.|++++|.+.+..|..+ +|.+.+..|..|+.+++|++|++
T Consensus 52 ~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 130 (597)
T 3oja_B 52 NQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 130 (597)
T ss_dssp CCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEe
Confidence 5688889999887 4555257789999999999999998777665 78899888888899999999999
Q ss_pred ccCcccccCChhhhCccccCceeccccccc------cccchhhhccccc
Q 047948 127 SRNQLNGSIPQEVGQLTFLNHLILDLIFLI------FWMVQSLVLLAIW 169 (171)
Q Consensus 127 s~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~------~~~~~~L~~L~l~ 169 (171)
++|.+++..+..|.++++|++|+|++|.++ +..+++|+.|++.
T Consensus 131 ~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 179 (597)
T 3oja_B 131 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLS 179 (597)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECT
T ss_pred eCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECc
Confidence 999999444445689999999999999987 3445678888874
No 106
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.08 E-value=1.9e-10 Score=87.24 Aligned_cols=105 Identities=18% Similarity=0.185 Sum_probs=75.6
Q ss_pred CCEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccc---cc------cccccccCCccccCCcCCCEEeccc
Q 047948 58 GRVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILP---QI------TNKLSGQIPSEIGLLTHLTVLHISR 128 (171)
Q Consensus 58 ~~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~---~~------~n~l~g~~p~~~~~l~~L~~L~ls~ 128 (171)
.+++.|++++|.+++. ++ +..++.|+.|++++|++++..+. .+ +|++++. +.+..+++|+.|++++
T Consensus 63 ~~L~~L~L~~N~i~~~-~~--l~~l~~L~~L~L~~N~l~~l~~~~~~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~ 137 (263)
T 1xeu_A 63 TNLKELHLSHNQISDL-SP--LKDLTKLEELSVNRNRLKNLNGIPSACLSRLFLDNNELRDT--DSLIHLKNLEILSIRN 137 (263)
T ss_dssp TTCCEEECCSSCCCCC-GG--GTTCSSCCEEECCSSCCSCCTTCCCSSCCEEECCSSCCSBS--GGGTTCTTCCEEECTT
T ss_pred CCCCEEECCCCccCCC-hh--hccCCCCCEEECCCCccCCcCccccCcccEEEccCCccCCC--hhhcCcccccEEECCC
Confidence 3788999999988743 33 77888899999999888753211 11 5666653 3577888888888888
Q ss_pred CcccccCChhhhCccccCceeccccccc----cccchhhhccccc
Q 047948 129 NQLNGSIPQEVGQLTFLNHLILDLIFLI----FWMVQSLVLLAIW 169 (171)
Q Consensus 129 N~l~g~~P~~~~~l~~L~~L~Ls~N~l~----~~~~~~L~~L~l~ 169 (171)
|++++ +| .+..+++|++|++++|+++ ...+++|+.|++.
T Consensus 138 N~i~~-~~-~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~l~ 180 (263)
T 1xeu_A 138 NKLKS-IV-MLGFLSKLEVLDLHGNEITNTGGLTRLKKVNWIDLT 180 (263)
T ss_dssp SCCCB-CG-GGGGCTTCCEEECTTSCCCBCTTSTTCCCCCEEEEE
T ss_pred CcCCC-Ch-HHccCCCCCEEECCCCcCcchHHhccCCCCCEEeCC
Confidence 88884 44 5778888888888888887 3445566666663
No 107
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.06 E-value=1.9e-10 Score=88.36 Aligned_cols=61 Identities=26% Similarity=0.386 Sum_probs=32.2
Q ss_pred cccccccCCccccCCcCCCEEecccCcccccCChhhhCccccCceeccccccc----cccchhhhcccc
Q 047948 104 TNKLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQEVGQLTFLNHLILDLIFLI----FWMVQSLVLLAI 168 (171)
Q Consensus 104 ~n~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~----~~~~~~L~~L~l 168 (171)
.|++++. ..+..+++|+.|++++|++++..| +..+++|++|++++|.++ ...+++|+.|++
T Consensus 143 ~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l~~l~~l~~L~~L~l 207 (291)
T 1h6t_A 143 NNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLRALAGLKNLDVLEL 207 (291)
T ss_dssp SSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEEE
T ss_pred CCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCChhhccCCCCCEEEC
Confidence 3444432 345555666666666666653322 555666666666666655 233444555544
No 108
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.05 E-value=4.4e-10 Score=86.33 Aligned_cols=103 Identities=19% Similarity=0.208 Sum_probs=76.4
Q ss_pred CCEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc------------cccccccCCccccCCcCCCEEe
Q 047948 58 GRVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI------------TNKLSGQIPSEIGLLTHLTVLH 125 (171)
Q Consensus 58 ~~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~------------~n~l~g~~p~~~~~l~~L~~L~ 125 (171)
.+++.|++++|.+++. +. +..++.|+.|++++|.+.+. |. + .|++.+. +.+..+++|+.|+
T Consensus 68 ~~L~~L~L~~n~l~~~-~~--l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~ 140 (291)
T 1h6t_A 68 PNVTKLFLNGNKLTDI-KP--LANLKNLGWLFLDENKVKDL-SS-LKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLY 140 (291)
T ss_dssp TTCCEEECCSSCCCCC-GG--GTTCTTCCEEECCSSCCCCG-GG-GTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEE
T ss_pred CCCCEEEccCCccCCC-cc--cccCCCCCEEECCCCcCCCC-hh-hccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEE
Confidence 3789999999998853 33 78889999999999988753 21 2 5666653 4577788888888
Q ss_pred cccCcccccCChhhhCccccCceeccccccc----cccchhhhccccc
Q 047948 126 ISRNQLNGSIPQEVGQLTFLNHLILDLIFLI----FWMVQSLVLLAIW 169 (171)
Q Consensus 126 ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~----~~~~~~L~~L~l~ 169 (171)
+++|++++. +.+..+++|++|++++|+++ ...+++|+.|++.
T Consensus 141 l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~L~ 186 (291)
T 1h6t_A 141 LGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLS 186 (291)
T ss_dssp CCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGGGTTCTTCCEEECC
T ss_pred ccCCcCCcc--hhhccCCCCCEEEccCCccccchhhcCCCccCEEECC
Confidence 888888853 56778888888888888887 3445677777764
No 109
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.05 E-value=4.1e-10 Score=85.32 Aligned_cols=105 Identities=20% Similarity=0.216 Sum_probs=81.1
Q ss_pred CCEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCccccccccc----c------cccccccCCccccCCcCCCEEecc
Q 047948 58 GRVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQ----I------TNKLSGQIPSEIGLLTHLTVLHIS 127 (171)
Q Consensus 58 ~~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~----~------~n~l~g~~p~~~~~l~~L~~L~ls 127 (171)
.+++.|++++|.++ .++ .+..++.|+.|++++|.+++..+-. + +|++++ +|. +.. ++|+.|+++
T Consensus 41 ~~L~~L~l~~n~i~-~l~--~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~~N~l~~-l~~-~~~-~~L~~L~L~ 114 (263)
T 1xeu_A 41 SGVQNFNGDNSNIQ-SLA--GMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKN-LNG-IPS-ACLSRLFLD 114 (263)
T ss_dssp TTCSEEECTTSCCC-CCT--TGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCSC-CTT-CCC-SSCCEEECC
T ss_pred CcCcEEECcCCCcc-cch--HHhhCCCCCEEECCCCccCCChhhccCCCCCEEECCCCccCC-cCc-ccc-CcccEEEcc
Confidence 37899999999988 455 4888999999999999998654411 0 677765 333 223 889999999
Q ss_pred cCcccccCChhhhCccccCceeccccccc----cccchhhhcccccc
Q 047948 128 RNQLNGSIPQEVGQLTFLNHLILDLIFLI----FWMVQSLVLLAIWP 170 (171)
Q Consensus 128 ~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~----~~~~~~L~~L~l~~ 170 (171)
+|++++ +| .+..+++|++|++++|+++ ...+++|+.|++..
T Consensus 115 ~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~~~~l~~l~~L~~L~L~~ 159 (263)
T 1xeu_A 115 NNELRD-TD-SLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHG 159 (263)
T ss_dssp SSCCSB-SG-GGTTCTTCCEEECTTSCCCBCGGGGGCTTCCEEECTT
T ss_pred CCccCC-Ch-hhcCcccccEEECCCCcCCCChHHccCCCCCEEECCC
Confidence 999985 44 5889999999999999998 45567888888753
No 110
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.04 E-value=3.7e-10 Score=88.08 Aligned_cols=107 Identities=19% Similarity=0.252 Sum_probs=78.5
Q ss_pred CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCccccccccc-----c------cccccccCCccccCCcCCCEEecc
Q 047948 59 RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQ-----I------TNKLSGQIPSEIGLLTHLTVLHIS 127 (171)
Q Consensus 59 ~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~-----~------~n~l~g~~p~~~~~l~~L~~L~ls 127 (171)
+++.|++++|.+++. +. +..++.|+.|++++|.++.. +.. + +|.+.+. +.+..+++|+.|+++
T Consensus 222 ~L~~L~l~~n~l~~~-~~--~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~ 295 (347)
T 4fmz_A 222 RLNSLKIGNNKITDL-SP--LANLSQLTWLEIGTNQISDI-NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLN 295 (347)
T ss_dssp TCCEEECCSSCCCCC-GG--GTTCTTCCEEECCSSCCCCC-GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECC
T ss_pred cCCEEEccCCccCCC-cc--hhcCCCCCEEECCCCccCCC-hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECc
Confidence 567777777777632 22 66777788888887777653 211 1 5666653 457788999999999
Q ss_pred cCcccccCChhhhCccccCceeccccccc----cccchhhhccccccC
Q 047948 128 RNQLNGSIPQEVGQLTFLNHLILDLIFLI----FWMVQSLVLLAIWPT 171 (171)
Q Consensus 128 ~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~----~~~~~~L~~L~l~~~ 171 (171)
+|.+++..|..+..+++|++|++++|+++ ...+++|++|++.+|
T Consensus 296 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~N 343 (347)
T 4fmz_A 296 NNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLASLSKMDSADFANQ 343 (347)
T ss_dssp SSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGGGGGCTTCSEESSSCC
T ss_pred CCcCCCcChhHhhccccCCEEEccCCccccccChhhhhccceeehhhh
Confidence 99999888888899999999999999988 345678888887643
No 111
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.04 E-value=3.9e-10 Score=87.23 Aligned_cols=40 Identities=25% Similarity=0.265 Sum_probs=16.7
Q ss_pred ccCCcCCCEEecccCcccccCChhhhCccccCceeccccccc
Q 047948 115 IGLLTHLTVLHISRNQLNGSIPQEVGQLTFLNHLILDLIFLI 156 (171)
Q Consensus 115 ~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~ 156 (171)
+..+++|+.|++++|++++ ++. +..+++|++|++++|+++
T Consensus 147 l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~ 186 (308)
T 1h6u_A 147 LAGLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKADDNKIS 186 (308)
T ss_dssp GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCC
T ss_pred ccCCCCccEEEccCCcCCC-Chh-hcCCCCCCEEECCCCccC
Confidence 3344444444444444442 222 344444444444444443
No 112
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.03 E-value=6.1e-10 Score=90.72 Aligned_cols=103 Identities=24% Similarity=0.284 Sum_probs=65.9
Q ss_pred CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc---------cccccccCCccccCCcCCCEEecccC
Q 047948 59 RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI---------TNKLSGQIPSEIGLLTHLTVLHISRN 129 (171)
Q Consensus 59 ~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~---------~n~l~g~~p~~~~~l~~L~~L~ls~N 129 (171)
++++|++++|.+++ +| ++..++.|++|++++|.+++ +|..+ .|++.+ +| .++.+++|+.|++++|
T Consensus 132 ~L~~L~L~~n~l~~-lp--~~~~l~~L~~L~l~~N~l~~-lp~~~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N 205 (454)
T 1jl5_A 132 LLEYLGVSNNQLEK-LP--ELQNSSFLKIIDVDNNSLKK-LPDLPPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNN 205 (454)
T ss_dssp TCCEEECCSSCCSS-CC--CCTTCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSS
T ss_pred CCCEEECcCCCCCC-Cc--ccCCCCCCCEEECCCCcCcc-cCCCcccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCC
Confidence 67888888888875 55 48888889999999888876 44332 566665 44 4666666666666665
Q ss_pred cccc-------------------cCChhhhCccccCceecccccccc--ccchhhhcccc
Q 047948 130 QLNG-------------------SIPQEVGQLTFLNHLILDLIFLIF--WMVQSLVLLAI 168 (171)
Q Consensus 130 ~l~g-------------------~~P~~~~~l~~L~~L~Ls~N~l~~--~~~~~L~~L~l 168 (171)
++++ .+| .++.+++|++|++++|++++ ..+++|+.|++
T Consensus 206 ~l~~l~~~~~~L~~L~l~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l 264 (454)
T 1jl5_A 206 SLKKLPDLPLSLESIVAGNNILEELP-ELQNLPFLTTIYADNNLLKTLPDLPPSLEALNV 264 (454)
T ss_dssp CCSSCCCCCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSSCCSCCTTCCEEEC
T ss_pred cCCcCCCCcCcccEEECcCCcCCccc-ccCCCCCCCEEECCCCcCCcccccccccCEEEC
Confidence 5553 344 25556666666666666652 33345555554
No 113
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.03 E-value=7.3e-11 Score=91.65 Aligned_cols=96 Identities=16% Similarity=0.097 Sum_probs=61.7
Q ss_pred CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCccccc-ccccc------------cccccccCCccccCCcCCCEEe
Q 047948 59 RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYI-ILPQI------------TNKLSGQIPSEIGLLTHLTVLH 125 (171)
Q Consensus 59 ~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~-~p~~~------------~n~l~g~~p~~~~~l~~L~~L~ 125 (171)
+++.+++.+|.+.+..+. +..++.|++|++++|.+.+. +|..+ +|.+.+..|..++.+++|++|+
T Consensus 71 ~l~~L~l~~n~l~~~~~~--~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~ 148 (336)
T 2ast_B 71 GVIAFRCPRSFMDQPLAE--HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 148 (336)
T ss_dssp TCSEEECTTCEECSCCCS--CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred cceEEEcCCccccccchh--hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence 567777777777655443 56678888888888877654 43322 4555555566666667777777
Q ss_pred cccC-ccccc-CChhhhCccccCceecccc-ccc
Q 047948 126 ISRN-QLNGS-IPQEVGQLTFLNHLILDLI-FLI 156 (171)
Q Consensus 126 ls~N-~l~g~-~P~~~~~l~~L~~L~Ls~N-~l~ 156 (171)
+++| .+++. +|..+..+++|++|++++| .++
T Consensus 149 L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~ 182 (336)
T 2ast_B 149 LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFT 182 (336)
T ss_dssp CTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCC
T ss_pred CCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcC
Confidence 7776 56542 5555666666666666666 555
No 114
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.02 E-value=4.9e-10 Score=94.41 Aligned_cols=102 Identities=23% Similarity=0.281 Sum_probs=60.7
Q ss_pred CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCccccccccc-----c------cccccccCCccccCCcCCCEEecc
Q 047948 59 RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQ-----I------TNKLSGQIPSEIGLLTHLTVLHIS 127 (171)
Q Consensus 59 ~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~-----~------~n~l~g~~p~~~~~l~~L~~L~ls 127 (171)
+++.|+|++|.+.+ ++ .+..++.|+.|++++|.+.+. +.. + .|.+++. ..+..+++|+.|+|+
T Consensus 88 ~L~~L~Ls~N~l~~-l~--~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls 161 (605)
T 1m9s_A 88 NLGWLFLDENKIKD-LS--SLKDLKKLKSLSLEHNGISDI-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLE 161 (605)
T ss_dssp TCCEEECCSSCCCC-CT--TSTTCTTCCEEECTTSCCCCC-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECC
T ss_pred CCCEEECcCCCCCC-Ch--hhccCCCCCEEEecCCCCCCC-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECc
Confidence 45556666665553 22 366666666666666666542 110 0 4555543 456667777777777
Q ss_pred cCcccccCChhhhCccccCceeccccccc----cccchhhhcccc
Q 047948 128 RNQLNGSIPQEVGQLTFLNHLILDLIFLI----FWMVQSLVLLAI 168 (171)
Q Consensus 128 ~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~----~~~~~~L~~L~l 168 (171)
+|++++..| +..+++|++|+|++|+|+ ...+++|+.|+|
T Consensus 162 ~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~L 204 (605)
T 1m9s_A 162 DNQISDIVP--LAGLTKLQNLYLSKNHISDLRALAGLKNLDVLEL 204 (605)
T ss_dssp SSCCCCCGG--GTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEEC
T ss_pred CCcCCCchh--hccCCCCCEEECcCCCCCCChHHccCCCCCEEEc
Confidence 777775444 667777777777777766 334455666655
No 115
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.02 E-value=3.4e-10 Score=87.62 Aligned_cols=104 Identities=19% Similarity=0.269 Sum_probs=68.1
Q ss_pred CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCccccccccc----c------cccccccCCccccCCcCCCEEeccc
Q 047948 59 RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQ----I------TNKLSGQIPSEIGLLTHLTVLHISR 128 (171)
Q Consensus 59 ~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~----~------~n~l~g~~p~~~~~l~~L~~L~ls~ 128 (171)
+++.|++++|.+++ ++ .+..++.|+.|++++|.+++..+-. + .|++++. +. +..+++|+.|++++
T Consensus 108 ~L~~L~l~~n~l~~-~~--~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~ 182 (308)
T 1h6u_A 108 SIKTLDLTSTQITD-VT--PLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDL-TP-LANLSKLTTLKADD 182 (308)
T ss_dssp TCCEEECTTSCCCC-CG--GGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCS
T ss_pred CCCEEECCCCCCCC-ch--hhcCCCCCCEEECCCCccCcCccccCCCCccEEEccCCcCCCC-hh-hcCCCCCCEEECCC
Confidence 45555555555543 22 2556666666666666665433210 1 5666653 33 78889999999999
Q ss_pred CcccccCChhhhCccccCceeccccccc----cccchhhhccccc
Q 047948 129 NQLNGSIPQEVGQLTFLNHLILDLIFLI----FWMVQSLVLLAIW 169 (171)
Q Consensus 129 N~l~g~~P~~~~~l~~L~~L~Ls~N~l~----~~~~~~L~~L~l~ 169 (171)
|++++ ++. +..+++|++|++++|+++ ...+++|+.|++.
T Consensus 183 n~l~~-~~~-l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~l~ 225 (308)
T 1h6u_A 183 NKISD-ISP-LASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLT 225 (308)
T ss_dssp SCCCC-CGG-GGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEE
T ss_pred CccCc-Chh-hcCCCCCCEEEccCCccCccccccCCCCCCEEEcc
Confidence 99984 444 788889999999999887 3445677777663
No 116
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.95 E-value=6.4e-10 Score=90.58 Aligned_cols=81 Identities=30% Similarity=0.346 Sum_probs=39.6
Q ss_pred CCCcEEEeecCcccccccccc---------cccccccCCccccCCcCCCEEecccCcccc--cCChhhhCc---------
Q 047948 83 PHLAYLVLYNNELFYIILPQI---------TNKLSGQIPSEIGLLTHLTVLHISRNQLNG--SIPQEVGQL--------- 142 (171)
Q Consensus 83 ~~L~~L~l~~n~l~g~~p~~~---------~n~l~g~~p~~~~~l~~L~~L~ls~N~l~g--~~P~~~~~l--------- 142 (171)
+.|+.|++++|++++ +|..+ +|+++ .+|. .+++|++|++++|++++ .+|..+..+
T Consensus 317 ~~L~~L~Ls~N~l~~-lp~~~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i 391 (454)
T 1jl5_A 317 PSLEELNVSNNKLIE-LPALPPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEV 391 (454)
T ss_dssp TTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC-----
T ss_pred CcCCEEECCCCcccc-ccccCCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhccccccc
Confidence 467777777777765 44332 56666 3555 46889999999999998 788888877
Q ss_pred ----cccCceecccccccc--ccchhhhcccc
Q 047948 143 ----TFLNHLILDLIFLIF--WMVQSLVLLAI 168 (171)
Q Consensus 143 ----~~L~~L~Ls~N~l~~--~~~~~L~~L~l 168 (171)
++|++|++++|++++ .++++++.|.+
T Consensus 392 ~~~~~~L~~L~ls~N~l~~~~~iP~sl~~L~~ 423 (454)
T 1jl5_A 392 PELPQNLKQLHVETNPLREFPDIPESVEDLRM 423 (454)
T ss_dssp --------------------------------
T ss_pred ccccCcCCEEECCCCcCCccccchhhHhheeC
Confidence 789999999999985 78888888776
No 117
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.93 E-value=1.8e-09 Score=87.99 Aligned_cols=100 Identities=27% Similarity=0.233 Sum_probs=47.1
Q ss_pred CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc---------cccccccCCccccCCcCCCEEecccC
Q 047948 59 RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI---------TNKLSGQIPSEIGLLTHLTVLHISRN 129 (171)
Q Consensus 59 ~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~---------~n~l~g~~p~~~~~l~~L~~L~ls~N 129 (171)
++++|++++|.+++. ++..++.|++|++++|.+++.--..+ .|++++ +| ++.+++|++|++++|
T Consensus 65 ~L~~L~Ls~n~l~~~----~~~~l~~L~~L~Ls~N~l~~~~~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N 137 (457)
T 3bz5_A 65 GLTKLICTSNNITTL----DLSQNTNLTYLACDSNKLTNLDVTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARN 137 (457)
T ss_dssp TCSEEECCSSCCSCC----CCTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTS
T ss_pred CCCEEEccCCcCCeE----ccccCCCCCEEECcCCCCceeecCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCC
Confidence 456666666665542 24555666666666666554210000 344443 22 444455555555555
Q ss_pred cccccCChhhhCccccCceeccccccc----cccchhhhcccc
Q 047948 130 QLNGSIPQEVGQLTFLNHLILDLIFLI----FWMVQSLVLLAI 168 (171)
Q Consensus 130 ~l~g~~P~~~~~l~~L~~L~Ls~N~l~----~~~~~~L~~L~l 168 (171)
++++ +| ++.+++|++|++++|+.. ...+++|+.|++
T Consensus 138 ~l~~-l~--l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l 177 (457)
T 3bz5_A 138 TLTE-ID--VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDC 177 (457)
T ss_dssp CCSC-CC--CTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEEC
T ss_pred ccce-ec--cccCCcCCEEECCCCCcccccccccCCcCCEEEC
Confidence 5553 22 444455555555555222 233445555554
No 118
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.93 E-value=2e-11 Score=88.58 Aligned_cols=92 Identities=22% Similarity=0.227 Sum_probs=64.9
Q ss_pred CCEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc------------cccccccCCccccCCcCCCEEe
Q 047948 58 GRVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI------------TNKLSGQIPSEIGLLTHLTVLH 125 (171)
Q Consensus 58 ~~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~------------~n~l~g~~p~~~~~l~~L~~L~ 125 (171)
.+++.|++++|.+++ +| .+..++.|+.|++++|.+. .+|..+ +|++++ +| .+..+++|++|+
T Consensus 48 ~~L~~L~ls~n~l~~-l~--~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~ 121 (198)
T 1ds9_A 48 KACKHLALSTNNIEK-IS--SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLY 121 (198)
T ss_dssp TTCSEEECSEEEESC-CC--CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEE
T ss_pred CCCCEEECCCCCCcc-cc--ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEE
Confidence 378999999999886 55 5888999999999999987 344332 555554 33 466667777777
Q ss_pred cccCcccccCC--hhhhCccccCceeccccccc
Q 047948 126 ISRNQLNGSIP--QEVGQLTFLNHLILDLIFLI 156 (171)
Q Consensus 126 ls~N~l~g~~P--~~~~~l~~L~~L~Ls~N~l~ 156 (171)
+++|++++ +| ..+..+++|++|++++|++.
T Consensus 122 l~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~l~ 153 (198)
T 1ds9_A 122 MSNNKITN-WGEIDKLAALDKLEDLLLAGNPLY 153 (198)
T ss_dssp ESEEECCC-HHHHHHHTTTTTCSEEEECSCHHH
T ss_pred CCCCcCCc-hhHHHHHhcCCCCCEEEecCCccc
Confidence 77777763 33 35666777777777777765
No 119
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.93 E-value=1.8e-09 Score=91.01 Aligned_cols=103 Identities=19% Similarity=0.211 Sum_probs=80.5
Q ss_pred CCEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc------------cccccccCCccccCCcCCCEEe
Q 047948 58 GRVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI------------TNKLSGQIPSEIGLLTHLTVLH 125 (171)
Q Consensus 58 ~~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~------------~n~l~g~~p~~~~~l~~L~~L~ 125 (171)
.+++.|+|++|.+.+.. + +..++.|+.|++++|.+.+. | .+ .|.+.+. +.+..+++|+.|+
T Consensus 65 ~~L~~L~Ls~N~l~~~~-~--l~~l~~L~~L~Ls~N~l~~l-~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~ 137 (605)
T 1m9s_A 65 PNVTKLFLNGNKLTDIK-P--LTNLKNLGWLFLDENKIKDL-S-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLY 137 (605)
T ss_dssp TTCCEEECTTSCCCCCG-G--GGGCTTCCEEECCSSCCCCC-T-TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEE
T ss_pred CCCCEEEeeCCCCCCCh-h--hccCCCCCEEECcCCCCCCC-h-hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEE
Confidence 47999999999998543 3 78899999999999998853 2 22 6777652 4578888899999
Q ss_pred cccCcccccCChhhhCccccCceeccccccc----cccchhhhccccc
Q 047948 126 ISRNQLNGSIPQEVGQLTFLNHLILDLIFLI----FWMVQSLVLLAIW 169 (171)
Q Consensus 126 ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~----~~~~~~L~~L~l~ 169 (171)
|++|++++. ..+..+++|++|+|++|.+. ...+++|+.|+|.
T Consensus 138 Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls 183 (605)
T 1m9s_A 138 LGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLS 183 (605)
T ss_dssp CCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGGGTTCTTCCEEECC
T ss_pred CCCCccCCc--hhhcccCCCCEEECcCCcCCCchhhccCCCCCEEECc
Confidence 999988854 56888889999999999887 3456677777774
No 120
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.92 E-value=4.3e-11 Score=92.99 Aligned_cols=120 Identities=11% Similarity=0.046 Sum_probs=93.1
Q ss_pred CCCcccceeeCCCCCEEEEEcCCCccceecCCCCCCCC--CCCcEEEeecCcccccccccc-----------ccccccc-
Q 047948 45 SPCAWSGIHCNHAGRVVGINLTSMSLNGTLLEFPFSSF--PHLAYLVLYNNELFYIILPQI-----------TNKLSGQ- 110 (171)
Q Consensus 45 ~~c~w~gv~c~~~~~v~~L~l~~~~l~~~~p~~~l~~L--~~L~~L~l~~n~l~g~~p~~~-----------~n~l~g~- 110 (171)
-+..|.++.|+. ..++.++++++.+.. . .+..+ +.++.|++++|.+.+..+..+ +|.+.+.
T Consensus 35 vc~~W~~~~~~~-~~~~~l~l~~~~~~~---~-~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~ 109 (336)
T 2ast_B 35 VCKRWYRLASDE-SLWQTLDLTGKNLHP---D-VTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVST 109 (336)
T ss_dssp SCHHHHHHHTCS-TTSSEEECTTCBCCH---H-HHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHH
T ss_pred HHHHHHHHhcCc-hhheeeccccccCCH---H-HHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHH
Confidence 344699998763 357899999988762 2 45555 789999999999988766533 5667665
Q ss_pred CCccccCCcCCCEEecccCcccccCChhhhCccccCceecccc-ccc-------cccchhhhccccc
Q 047948 111 IPSEIGLLTHLTVLHISRNQLNGSIPQEVGQLTFLNHLILDLI-FLI-------FWMVQSLVLLAIW 169 (171)
Q Consensus 111 ~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~L~Ls~N-~l~-------~~~~~~L~~L~l~ 169 (171)
+|..+..+++|++|++++|.+++..|..+..+++|++|++++| .++ ...+++|++|++.
T Consensus 110 ~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~ 176 (336)
T 2ast_B 110 LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLS 176 (336)
T ss_dssp HHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECC
T ss_pred HHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCC
Confidence 7777888899999999999999888888888999999999998 566 2345677777774
No 121
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.91 E-value=1.5e-09 Score=88.49 Aligned_cols=37 Identities=16% Similarity=0.167 Sum_probs=22.7
Q ss_pred CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccc
Q 047948 59 RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYII 99 (171)
Q Consensus 59 ~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~ 99 (171)
+++.|++++|.+++ +| +..++.|+.|++++|.+++..
T Consensus 213 ~L~~L~Ls~N~l~~-ip---~~~l~~L~~L~l~~N~l~~~~ 249 (457)
T 3bz5_A 213 QLTFLDCSSNKLTE-ID---VTPLTQLTYFDCSVNPLTELD 249 (457)
T ss_dssp TCSEEECCSSCCSC-CC---CTTCTTCSEEECCSSCCSCCC
T ss_pred CCCEEECcCCcccc-cC---ccccCCCCEEEeeCCcCCCcC
Confidence 56666666666664 32 456666666676666666543
No 122
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.91 E-value=1.9e-09 Score=87.60 Aligned_cols=17 Identities=24% Similarity=0.104 Sum_probs=6.7
Q ss_pred hCccccCceeccccccc
Q 047948 140 GQLTFLNHLILDLIFLI 156 (171)
Q Consensus 140 ~~l~~L~~L~Ls~N~l~ 156 (171)
..+++|++|++++|+++
T Consensus 350 ~~l~~L~~L~l~~n~l~ 366 (466)
T 1o6v_A 350 ANLTNINWLSAGHNQIS 366 (466)
T ss_dssp TTCTTCCEEECCSSCCC
T ss_pred ccCCCCCEEeCCCCccC
Confidence 33334444444444333
No 123
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.90 E-value=1.3e-09 Score=91.18 Aligned_cols=41 Identities=22% Similarity=0.234 Sum_probs=21.5
Q ss_pred CEEecccCcccccCChhhhCccccCceeccccccccccchhh
Q 047948 122 TVLHISRNQLNGSIPQEVGQLTFLNHLILDLIFLIFWMVQSL 163 (171)
Q Consensus 122 ~~L~ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~~~~~~~L 163 (171)
+.|++++|+++ .+|..+..+++|++|+|++|++++.++..|
T Consensus 210 ~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l 250 (571)
T 3cvr_A 210 IFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESL 250 (571)
T ss_dssp EEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHH
T ss_pred eEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHH
Confidence 55555555555 455555555555555555555554444433
No 124
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.87 E-value=3e-09 Score=86.49 Aligned_cols=39 Identities=28% Similarity=0.253 Sum_probs=16.8
Q ss_pred cCCcCCCEEecccCcccccCChhhhCccccCceeccccccc
Q 047948 116 GLLTHLTVLHISRNQLNGSIPQEVGQLTFLNHLILDLIFLI 156 (171)
Q Consensus 116 ~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~ 156 (171)
..+++|+.|++++|++++..| +..+++|++|++++|+++
T Consensus 306 ~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~ 344 (466)
T 1o6v_A 306 SNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVS 344 (466)
T ss_dssp GGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCC
T ss_pred cCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccC
Confidence 344444444444444443322 334444444444444444
No 125
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.87 E-value=2.3e-11 Score=88.30 Aligned_cols=104 Identities=21% Similarity=0.221 Sum_probs=74.4
Q ss_pred EEEEEcCCCccceecC------CCCCCCCCCCcEEEeecCcccccccccc------------cccccccCCccccCCcCC
Q 047948 60 VVGINLTSMSLNGTLL------EFPFSSFPHLAYLVLYNNELFYIILPQI------------TNKLSGQIPSEIGLLTHL 121 (171)
Q Consensus 60 v~~L~l~~~~l~~~~p------~~~l~~L~~L~~L~l~~n~l~g~~p~~~------------~n~l~g~~p~~~~~l~~L 121 (171)
++.+++..+.+.|.+| . .+..++.|++|++++|.+.+ +| .+ .|.+. .+|..+..+++|
T Consensus 20 l~~l~l~~~~l~~~~~~l~~l~~-~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L 95 (198)
T 1ds9_A 20 VVATEAEKVELHGMIPPIEKMDA-TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTL 95 (198)
T ss_dssp CCCTTCSEEECCBCCTTCCCCHH-HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHC
T ss_pred ccCcchheeEeccccCcHhhhhH-HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcC
Confidence 3444444444444433 3 57788999999999999986 55 43 56666 567767777888
Q ss_pred CEEecccCcccccCChhhhCccccCceeccccccc-------cccchhhhccccc
Q 047948 122 TVLHISRNQLNGSIPQEVGQLTFLNHLILDLIFLI-------FWMVQSLVLLAIW 169 (171)
Q Consensus 122 ~~L~ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~-------~~~~~~L~~L~l~ 169 (171)
+.|++++|++++ +| .+..+++|++|++++|+++ ...+++|++|++.
T Consensus 96 ~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~ 148 (198)
T 1ds9_A 96 EELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLA 148 (198)
T ss_dssp SEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEEC
T ss_pred CEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEec
Confidence 888888888884 55 5788888888888888887 2345567777764
No 126
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.86 E-value=2.6e-09 Score=89.40 Aligned_cols=89 Identities=17% Similarity=0.172 Sum_probs=75.5
Q ss_pred CCEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc------------cccccccC-CccccCCcCCCEE
Q 047948 58 GRVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI------------TNKLSGQI-PSEIGLLTHLTVL 124 (171)
Q Consensus 58 ~~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~------------~n~l~g~~-p~~~~~l~~L~~L 124 (171)
.+++.|+|++|.++ .+|. .+..++.|+.|++++|.+++ +| .+ +|++++.. |..++.+++|+.|
T Consensus 463 ~~L~~L~Ls~N~l~-~lp~-~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L 538 (567)
T 1dce_A 463 LLVTHLDLSHNRLR-ALPP-ALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLL 538 (567)
T ss_dssp TTCCEEECCSSCCC-CCCG-GGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEE
T ss_pred ccCcEeecCccccc-ccch-hhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEE
Confidence 37899999999999 8888 89999999999999999997 56 44 78999887 9999999999999
Q ss_pred ecccCcccccCChh---hhCccccCceec
Q 047948 125 HISRNQLNGSIPQE---VGQLTFLNHLIL 150 (171)
Q Consensus 125 ~ls~N~l~g~~P~~---~~~l~~L~~L~L 150 (171)
++++|.+++..|.. +..+++|++|++
T Consensus 539 ~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 539 NLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp ECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred EecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 99999999665532 334788888864
No 127
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.85 E-value=2.3e-09 Score=83.62 Aligned_cols=93 Identities=18% Similarity=0.263 Sum_probs=75.8
Q ss_pred CCEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCccccccccc-----c------cccccccCCccccCCcCCCEEec
Q 047948 58 GRVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQ-----I------TNKLSGQIPSEIGLLTHLTVLHI 126 (171)
Q Consensus 58 ~~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~-----~------~n~l~g~~p~~~~~l~~L~~L~l 126 (171)
.+++.|++++|.+++ + + .+..++.|+.|++++|.+.+. +.. + +|.+.+..|..+..+++|+.|++
T Consensus 243 ~~L~~L~l~~n~l~~-~-~-~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 318 (347)
T 4fmz_A 243 SQLTWLEIGTNQISD-I-N-AVKDLTKLKMLNVGSNQISDI-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFL 318 (347)
T ss_dssp TTCCEEECCSSCCCC-C-G-GGTTCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEEC
T ss_pred CCCCEEECCCCccCC-C-h-hHhcCCCcCEEEccCCccCCC-hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEc
Confidence 478999999999875 3 3 588899999999999988864 211 1 78888888888999999999999
Q ss_pred ccCcccccCChhhhCccccCceeccccccc
Q 047948 127 SRNQLNGSIPQEVGQLTFLNHLILDLIFLI 156 (171)
Q Consensus 127 s~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~ 156 (171)
++|.+++..| +..+++|++|++++|.|+
T Consensus 319 ~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 319 SQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp CSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred cCCccccccC--hhhhhccceeehhhhccc
Confidence 9999996555 889999999999999875
No 128
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.82 E-value=3.7e-10 Score=89.66 Aligned_cols=46 Identities=13% Similarity=0.083 Sum_probs=19.9
Q ss_pred CCccccCCcCCCEEecccCccccc----CChhhh--CccccCceeccccccc
Q 047948 111 IPSEIGLLTHLTVLHISRNQLNGS----IPQEVG--QLTFLNHLILDLIFLI 156 (171)
Q Consensus 111 ~p~~~~~l~~L~~L~ls~N~l~g~----~P~~~~--~l~~L~~L~Ls~N~l~ 156 (171)
+|..+..+++|+.|++++|.+++. +|..+. .+++|++|+|++|.++
T Consensus 236 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~ 287 (386)
T 2ca6_A 236 LAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIE 287 (386)
T ss_dssp HHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCB
T ss_pred HHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCC
Confidence 334444444444444444444433 233332 2444444444444444
No 129
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.82 E-value=9e-10 Score=87.38 Aligned_cols=35 Identities=20% Similarity=0.106 Sum_probs=24.7
Q ss_pred CEEEEEcCCCcccee----cCCCCCCCCCCCcEEEeecCc
Q 047948 59 RVVGINLTSMSLNGT----LLEFPFSSFPHLAYLVLYNNE 94 (171)
Q Consensus 59 ~v~~L~l~~~~l~~~----~p~~~l~~L~~L~~L~l~~n~ 94 (171)
+++.|+|++|.+... ++. .+..++.|+.|++++|.
T Consensus 33 ~L~~L~L~~n~i~~~~~~~l~~-~l~~~~~L~~L~Ls~~~ 71 (386)
T 2ca6_A 33 SVKEIVLSGNTIGTEAARWLSE-NIASKKDLEIAEFSDIF 71 (386)
T ss_dssp CCCEEECTTSEECHHHHHHHHH-TTTTCTTCCEEECCSCC
T ss_pred CccEEECCCCCCCHHHHHHHHH-HHHhCCCccEEeCcccc
Confidence 578888888877654 223 36677888888888753
No 130
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.81 E-value=7e-10 Score=87.48 Aligned_cols=97 Identities=25% Similarity=0.184 Sum_probs=60.1
Q ss_pred CEEEEEcCCCccceecCCCCCCCC-----CCCcEEEeecCcccccccc-----------cc------cccccccCCcccc
Q 047948 59 RVVGINLTSMSLNGTLLEFPFSSF-----PHLAYLVLYNNELFYIILP-----------QI------TNKLSGQIPSEIG 116 (171)
Q Consensus 59 ~v~~L~l~~~~l~~~~p~~~l~~L-----~~L~~L~l~~n~l~g~~p~-----------~~------~n~l~g~~p~~~~ 116 (171)
++++|++++|.+.+..+. .+..+ +.|++|++++|.+++..+. .+ .|++++..+..+.
T Consensus 52 ~L~~L~Ls~N~l~~~~~~-~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~ 130 (362)
T 3goz_A 52 SVTSLNLSGNSLGFKNSD-ELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFK 130 (362)
T ss_dssp TCCEEECCSSCGGGSCHH-HHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH
T ss_pred ceeEEECcCCCCCHHHHH-HHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHH
Confidence 678888888887755444 44443 7788888888887754432 12 5566554443332
Q ss_pred ----C-CcCCCEEecccCcccccCC----hhhhCcc-ccCceeccccccc
Q 047948 117 ----L-LTHLTVLHISRNQLNGSIP----QEVGQLT-FLNHLILDLIFLI 156 (171)
Q Consensus 117 ----~-l~~L~~L~ls~N~l~g~~P----~~~~~l~-~L~~L~Ls~N~l~ 156 (171)
. .++|++|++++|++++.-+ ..+..++ +|++|+|++|+++
T Consensus 131 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~ 180 (362)
T 3goz_A 131 QAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLA 180 (362)
T ss_dssp HHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred HHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCc
Confidence 2 2577777777777774333 3334444 6777777777776
No 131
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.81 E-value=9.5e-10 Score=92.97 Aligned_cols=115 Identities=22% Similarity=0.160 Sum_probs=75.4
Q ss_pred CCCCCCcccceeeC------C-CCCEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc---------cc
Q 047948 42 TKISPCAWSGIHCN------H-AGRVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI---------TN 105 (171)
Q Consensus 42 ~~~~~c~w~gv~c~------~-~~~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~---------~n 105 (171)
...++|.|.|..|. + ...++.|+++++.++ .+|. .+. +.|+.|++++|.++. +|..+ +|
T Consensus 17 ~~~~~~~~~~r~~~~~~~~~c~~~~l~~L~ls~n~L~-~lp~-~l~--~~L~~L~L~~N~l~~-lp~~l~~L~~L~Ls~N 91 (622)
T 3g06_A 17 RAAPAEESRGRAAVVQKMRACLNNGNAVLNVGESGLT-TLPD-CLP--AHITTLVIPDNNLTS-LPALPPELRTLEVSGN 91 (622)
T ss_dssp HTCCGGGHHHHHHHHHHHHHHHHHCCCEEECCSSCCS-CCCS-CCC--TTCSEEEECSCCCSC-CCCCCTTCCEEEECSC
T ss_pred hcCCcchhccccccCcccccccCCCCcEEEecCCCcC-ccCh-hhC--CCCcEEEecCCCCCC-CCCcCCCCCEEEcCCC
Confidence 45677888664321 1 125889999999988 7776 554 789999999998873 44332 56
Q ss_pred cccccCCccccCCcCCCEEecccCcccccCChhhhCccccCceeccccccc--cccchhhhccccc
Q 047948 106 KLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQEVGQLTFLNHLILDLIFLI--FWMVQSLVLLAIW 169 (171)
Q Consensus 106 ~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~--~~~~~~L~~L~l~ 169 (171)
++++ +|. .+++|++|++++|.++ .+|. .+++|++|++++|+++ ...+++|+.|++.
T Consensus 92 ~l~~-lp~---~l~~L~~L~Ls~N~l~-~l~~---~l~~L~~L~L~~N~l~~lp~~l~~L~~L~Ls 149 (622)
T 3g06_A 92 QLTS-LPV---LPPGLLELSIFSNPLT-HLPA---LPSGLCKLWIFGNQLTSLPVLPPGLQELSVS 149 (622)
T ss_dssp CCSC-CCC---CCTTCCEEEECSCCCC-CCCC---CCTTCCEEECCSSCCSCCCCCCTTCCEEECC
T ss_pred cCCc-CCC---CCCCCCEEECcCCcCC-CCCC---CCCCcCEEECCCCCCCcCCCCCCCCCEEECc
Confidence 6653 554 5678888888888887 4555 4456666666666665 2223556666553
No 132
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.76 E-value=9.7e-09 Score=86.79 Aligned_cols=76 Identities=26% Similarity=0.262 Sum_probs=55.9
Q ss_pred CCCcEEEeecCcccccccccc---------cccccccCCccccCCcCCCEEecccCcccccCChhhhCccccCceecccc
Q 047948 83 PHLAYLVLYNNELFYIILPQI---------TNKLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQEVGQLTFLNHLILDLI 153 (171)
Q Consensus 83 ~~L~~L~l~~n~l~g~~p~~~---------~n~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~L~Ls~N 153 (171)
++|+.|++++|.+++ +|..+ +|+++ .+|. .+++|+.|++++|+++ .+|..+.++++|++|+|++|
T Consensus 221 ~~L~~L~Ls~N~L~~-lp~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N 294 (622)
T 3g06_A 221 SGLKELIVSGNRLTS-LPVLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGN 294 (622)
T ss_dssp TTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSC
T ss_pred CCCCEEEccCCccCc-CCCCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCC
Confidence 567777777777765 33222 56666 3554 5678889999999998 88888889999999999999
Q ss_pred ccccccchhhh
Q 047948 154 FLIFWMVQSLV 164 (171)
Q Consensus 154 ~l~~~~~~~L~ 164 (171)
++++..+..+.
T Consensus 295 ~l~~~~~~~l~ 305 (622)
T 3g06_A 295 PLSERTLQALR 305 (622)
T ss_dssp CCCHHHHHHHH
T ss_pred CCCCcCHHHHH
Confidence 98866555544
No 133
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.74 E-value=1.7e-09 Score=85.27 Aligned_cols=110 Identities=21% Similarity=0.177 Sum_probs=77.6
Q ss_pred CEEEEEcCCCccceecC----CCCCCCCC-CCcEEEeecCcccccccc-----------cc------cccccccCCcccc
Q 047948 59 RVVGINLTSMSLNGTLL----EFPFSSFP-HLAYLVLYNNELFYIILP-----------QI------TNKLSGQIPSEIG 116 (171)
Q Consensus 59 ~v~~L~l~~~~l~~~~p----~~~l~~L~-~L~~L~l~~n~l~g~~p~-----------~~------~n~l~g~~p~~~~ 116 (171)
+++.|++++|.+++..+ . .+..++ .|++|++++|.+.+..+. .+ +|.+++..+..++
T Consensus 23 ~L~~L~Ls~n~l~~~~~~~l~~-~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~ 101 (362)
T 3goz_A 23 GVTSLDLSLNNLYSISTVELIQ-AFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELV 101 (362)
T ss_dssp TCCEEECTTSCGGGSCHHHHHH-HHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH
T ss_pred CceEEEccCCCCChHHHHHHHH-HHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHH
Confidence 59999999999986544 4 577788 899999999999875442 22 6777666555433
Q ss_pred ----CC-cCCCEEecccCcccccCChhhhC-----ccccCceecccccccc-----------ccchhhhccccc
Q 047948 117 ----LL-THLTVLHISRNQLNGSIPQEVGQ-----LTFLNHLILDLIFLIF-----------WMVQSLVLLAIW 169 (171)
Q Consensus 117 ----~l-~~L~~L~ls~N~l~g~~P~~~~~-----l~~L~~L~Ls~N~l~~-----------~~~~~L~~L~l~ 169 (171)
.+ ++|+.|++++|++++..+..+.. .++|++|++++|.++. ..+.+|++|++.
T Consensus 102 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls 175 (362)
T 3goz_A 102 KTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLR 175 (362)
T ss_dssp HHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECT
T ss_pred HHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeec
Confidence 33 78888888888888655554433 2578888888888871 112377777764
No 134
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.60 E-value=1.6e-09 Score=87.43 Aligned_cols=16 Identities=38% Similarity=0.198 Sum_probs=7.4
Q ss_pred CCCCCcEEEeecCccc
Q 047948 81 SFPHLAYLVLYNNELF 96 (171)
Q Consensus 81 ~L~~L~~L~l~~n~l~ 96 (171)
.++.|+.|++++|.+.
T Consensus 282 ~~~~L~~L~Ls~n~i~ 297 (461)
T 1z7x_W 282 AKESLKELSLAGNELG 297 (461)
T ss_dssp HCTTCCEEECTTCCCH
T ss_pred hCCCcceEECCCCCCc
Confidence 3444444444444443
No 135
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.59 E-value=6.5e-08 Score=75.86 Aligned_cols=91 Identities=20% Similarity=0.131 Sum_probs=52.1
Q ss_pred EEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccc--------------------------------------c
Q 047948 63 INLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQI--------------------------------------T 104 (171)
Q Consensus 63 L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~--------------------------------------~ 104 (171)
+.+..|++....+. .|..++.|++|++++|++....+..+ .
T Consensus 85 l~~~~N~l~~l~~~-~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~ 163 (350)
T 4ay9_X 85 RIEKANNLLYINPE-AFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNK 163 (350)
T ss_dssp EEEEETTCCEECTT-SBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCS
T ss_pred hcccCCcccccCch-hhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccc
Confidence 34444555533344 56677777777777777764433222 3
Q ss_pred ccccccCCccccCCcCCCEEeccc-CcccccCCh-hhhCccccCceeccccccc
Q 047948 105 NKLSGQIPSEIGLLTHLTVLHISR-NQLNGSIPQ-EVGQLTFLNHLILDLIFLI 156 (171)
Q Consensus 105 n~l~g~~p~~~~~l~~L~~L~ls~-N~l~g~~P~-~~~~l~~L~~L~Ls~N~l~ 156 (171)
|+++ .+|.......+|+.+++++ |.++ .+|. .|..+++|++|++++|+|+
T Consensus 164 N~i~-~i~~~~f~~~~L~~l~l~~~n~l~-~i~~~~f~~l~~L~~LdLs~N~l~ 215 (350)
T 4ay9_X 164 NGIQ-EIHNSAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIH 215 (350)
T ss_dssp SCCC-EECTTSSTTEEEEEEECTTCTTCC-CCCTTTTTTEECCSEEECTTSCCC
T ss_pred cccc-CCChhhccccchhHHhhccCCccc-CCCHHHhccCcccchhhcCCCCcC
Confidence 3333 2333334445666666654 3333 5554 4577778888888888776
No 136
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.55 E-value=6.1e-09 Score=84.01 Aligned_cols=38 Identities=26% Similarity=0.363 Sum_probs=27.7
Q ss_pred CEEEEEcCCCccce----ecCCCCCCCCCCCcEEEeecCcccc
Q 047948 59 RVVGINLTSMSLNG----TLLEFPFSSFPHLAYLVLYNNELFY 97 (171)
Q Consensus 59 ~v~~L~l~~~~l~~----~~p~~~l~~L~~L~~L~l~~n~l~g 97 (171)
++++|++++|.++. .++. .+..++.|++|++++|.+..
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~-~l~~~~~L~~L~Ls~n~i~~ 127 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSS-TLRTLPTLQELHLSDNLLGD 127 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHH-HTTSCTTCCEEECCSSBCHH
T ss_pred ceeEEEccCCCCCHHHHHHHHH-HHccCCceeEEECCCCcCch
Confidence 57888888887763 4455 67777788888888887764
No 137
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.35 E-value=2.5e-07 Score=70.43 Aligned_cols=65 Identities=29% Similarity=0.372 Sum_probs=45.9
Q ss_pred CCCCCcEEEeecCcccccccccccccccccCCccccCCcCCCEEecccCcccccCChhhhCcc--ccCceecccccccc
Q 047948 81 SFPHLAYLVLYNNELFYIILPQITNKLSGQIPSEIGLLTHLTVLHISRNQLNGSIPQEVGQLT--FLNHLILDLIFLIF 157 (171)
Q Consensus 81 ~L~~L~~L~l~~n~l~g~~p~~~~n~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~--~L~~L~Ls~N~l~~ 157 (171)
.++.|+.|+|++|++++.. .+|..+..+++|+.|+|++|++++. ..+..++ +|++|+|++|.+.+
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~----------~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~ 234 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLD----------DMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCD 234 (267)
T ss_dssp HCTTCCEEECTTSCCCCCG----------GGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGG
T ss_pred hCCCCCEEECCCCCCCCCc----------cchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCcc
Confidence 3567778888877776421 2445566788888889988888854 3344444 78888888888874
No 138
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.33 E-value=7.4e-08 Score=76.55 Aligned_cols=43 Identities=14% Similarity=0.043 Sum_probs=25.1
Q ss_pred cccCCcCCCEEecccCccccc----CChhhhCccccCceeccccccc
Q 047948 114 EIGLLTHLTVLHISRNQLNGS----IPQEVGQLTFLNHLILDLIFLI 156 (171)
Q Consensus 114 ~~~~l~~L~~L~ls~N~l~g~----~P~~~~~l~~L~~L~Ls~N~l~ 156 (171)
.+...+.|++|+|++|.++.. ++..+...++|++|+|++|.++
T Consensus 178 ~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~ 224 (372)
T 3un9_A 178 GLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAG 224 (372)
T ss_dssp HHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCC
T ss_pred HHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCC
Confidence 334556666666666666532 2344455556666666666665
No 139
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.26 E-value=3.8e-08 Score=78.23 Aligned_cols=103 Identities=21% Similarity=0.094 Sum_probs=62.4
Q ss_pred CEEEEEcCCCccceecCCCCC-CCCCCCcEEEeecCcccccccccccccccccCCccc-cCCcCCCEEecccCcccc---
Q 047948 59 RVVGINLTSMSLNGTLLEFPF-SSFPHLAYLVLYNNELFYIILPQITNKLSGQIPSEI-GLLTHLTVLHISRNQLNG--- 133 (171)
Q Consensus 59 ~v~~L~l~~~~l~~~~p~~~l-~~L~~L~~L~l~~n~l~g~~p~~~~n~l~g~~p~~~-~~l~~L~~L~ls~N~l~g--- 133 (171)
+++.|+|++|.++..... .+ ..++.|+.|++++|.++..-.. .+...+ ...+.|+.|++++|.++.
T Consensus 102 ~L~~L~Ls~n~l~~~~~~-~l~~~L~~L~~L~Ls~n~l~~~~~~--------~L~~~L~~~~~~L~~L~Ls~n~l~~~~~ 172 (372)
T 3un9_A 102 ALDEVNLASCQLDPAGLR-TLLPVFLRARKLGLQLNSLGPEACK--------DLRDLLLHDQCQITTLRLSNNPLTAAGV 172 (372)
T ss_dssp CEEEEECTTCCCCHHHHH-HTHHHHHTEEEEECCSSCCCHHHHH--------HHHHHHHSTTCCCCEEECCSSCCHHHHH
T ss_pred CceEEEecCCCCCHHHHH-HHHHHHHhccHhhcCCCCCCHHHHH--------HHHHHHHhcCCccceeeCCCCCCChHHH
Confidence 466666666655432211 11 1234556666666655421110 011112 245789999999999975
Q ss_pred -cCChhhhCccccCceeccccccc----------cccchhhhcccccc
Q 047948 134 -SIPQEVGQLTFLNHLILDLIFLI----------FWMVQSLVLLAIWP 170 (171)
Q Consensus 134 -~~P~~~~~l~~L~~L~Ls~N~l~----------~~~~~~L~~L~l~~ 170 (171)
.++..+..+++|++|+|++|.++ ...+++|++|++..
T Consensus 173 ~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~ 220 (372)
T 3un9_A 173 AVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAY 220 (372)
T ss_dssp HHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCS
T ss_pred HHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCC
Confidence 34555677899999999999997 13455788888853
No 140
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.24 E-value=4.8e-07 Score=68.84 Aligned_cols=78 Identities=23% Similarity=0.226 Sum_probs=60.8
Q ss_pred CEEEEEcCCCccce--ecCCCCCCCCCCCcEEEeecCcccccccccccccccccCCccccCCcCCCEEecccCcccccCC
Q 047948 59 RVVGINLTSMSLNG--TLLEFPFSSFPHLAYLVLYNNELFYIILPQITNKLSGQIPSEIGLLTHLTVLHISRNQLNGSIP 136 (171)
Q Consensus 59 ~v~~L~l~~~~l~~--~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~~n~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P 136 (171)
+++.|+|++|.+++ .++. .+..+++|+.|+|++|.+.+. . .+ ..+..+ +|+.|++++|.+++.+|
T Consensus 171 ~L~~L~Ls~N~l~~l~~l~~-~~~~l~~L~~L~Ls~N~i~~~-~---------~l-~~l~~l-~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 171 ELLSLNLSNNRLYRLDDMSS-IVQKAPNLKILNLSGNELKSE-R---------EL-DKIKGL-KLEELWLDGNSLCDTFR 237 (267)
T ss_dssp TCCEEECTTSCCCCCGGGTT-HHHHSTTCCEEECTTSCCCSG-G---------GG-GGGTTS-CCSEEECTTSTTGGGCS
T ss_pred CCCEEECCCCCCCCCccchh-HHhhCCCCCEEECCCCccCCc-h---------hh-hhcccC-CcceEEccCCcCccccC
Confidence 79999999999997 4555 567899999999999999742 0 11 223344 89999999999998887
Q ss_pred h-------hhhCccccCcee
Q 047948 137 Q-------EVGQLTFLNHLI 149 (171)
Q Consensus 137 ~-------~~~~l~~L~~L~ 149 (171)
. .+..+++|+.||
T Consensus 238 ~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 238 DQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp SHHHHHHHHHHHCTTCCEES
T ss_pred cchhHHHHHHHHCcccCeEC
Confidence 3 356788888876
No 141
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.21 E-value=2.1e-06 Score=66.62 Aligned_cols=95 Identities=15% Similarity=0.066 Sum_probs=75.3
Q ss_pred CCEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccccccccccccccccCCccccCCcCCC-EEecccCcccccCC
Q 047948 58 GRVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFYIILPQITNKLSGQIPSEIGLLTHLT-VLHISRNQLNGSIP 136 (171)
Q Consensus 58 ~~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~~n~l~g~~p~~~~~l~~L~-~L~ls~N~l~g~~P 136 (171)
.+++.+++++|+++ .++...|.++..|+.++++.| +.. ++ +..|..+.+|+ .+++.. .++..-+
T Consensus 226 ~~L~~l~L~~n~i~-~I~~~aF~~~~~L~~l~l~~n-i~~-I~-----------~~aF~~~~~L~~~l~l~~-~l~~I~~ 290 (329)
T 3sb4_A 226 PNLVSLDISKTNAT-TIPDFTFAQKKYLLKIKLPHN-LKT-IG-----------QRVFSNCGRLAGTLELPA-SVTAIEF 290 (329)
T ss_dssp TTCCEEECTTBCCC-EECTTTTTTCTTCCEEECCTT-CCE-EC-----------TTTTTTCTTCCEEEEECT-TCCEECT
T ss_pred CCCeEEECCCCCcc-eecHhhhhCCCCCCEEECCcc-cce-eh-----------HHHhhCChhccEEEEEcc-cceEEch
Confidence 37899999999988 566558999999999999987 541 11 24688999999 999988 7775556
Q ss_pred hhhhCccccCceeccccccc------cccchhhhccc
Q 047948 137 QEVGQLTFLNHLILDLIFLI------FWMVQSLVLLA 167 (171)
Q Consensus 137 ~~~~~l~~L~~L~Ls~N~l~------~~~~~~L~~L~ 167 (171)
..|.+|++|+.++++.|+++ +..+++|+.++
T Consensus 291 ~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 291 GAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp TTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred hhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 78999999999999999887 45556666553
No 142
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.04 E-value=4.4e-07 Score=65.11 Aligned_cols=89 Identities=13% Similarity=0.113 Sum_probs=48.1
Q ss_pred CEEEEEcCCC-cccee----cCCCCCCCCCCCcEEEeecCcccccccccccccccccCCccccCCcCCCEEecccCcccc
Q 047948 59 RVVGINLTSM-SLNGT----LLEFPFSSFPHLAYLVLYNNELFYIILPQITNKLSGQIPSEIGLLTHLTVLHISRNQLNG 133 (171)
Q Consensus 59 ~v~~L~l~~~-~l~~~----~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~~n~l~g~~p~~~~~l~~L~~L~ls~N~l~g 133 (171)
.++.|+|++| .+... +.. .+...+.|++|++++|.+...--. .+...+...+.|++|+|++|.++.
T Consensus 37 ~L~~L~L~~n~~i~~~g~~~l~~-~L~~~~~L~~L~Ls~n~i~~~g~~--------~l~~~L~~n~~L~~L~L~~N~i~~ 107 (185)
T 1io0_A 37 DLEEVNLNNIMNIPVPTLKACAE-ALKTNTYVKKFSIVGTRSNDPVAF--------ALAEMLKVNNTLKSLNVESNFISG 107 (185)
T ss_dssp TCCEEECTTCTTCCHHHHHHHHH-HHTTCCSCCEEECTTSCCCHHHHH--------HHHHHHHHCSSCCEEECCSSCCCH
T ss_pred CCCEEEecCCCCCCHHHHHHHHH-HHHhCCCcCEEECcCCCCChHHHH--------HHHHHHHhCCCcCEEECcCCcCCH
Confidence 5777777777 66421 222 345556777777777776421000 111223344556666666666653
Q ss_pred c----CChhhhCccccCceec--cccccc
Q 047948 134 S----IPQEVGQLTFLNHLIL--DLIFLI 156 (171)
Q Consensus 134 ~----~P~~~~~l~~L~~L~L--s~N~l~ 156 (171)
. +...+...++|++|+| ++|.+.
T Consensus 108 ~g~~~l~~~L~~n~~L~~L~L~~~~N~i~ 136 (185)
T 1io0_A 108 SGILALVEALQSNTSLIELRIDNQSQPLG 136 (185)
T ss_dssp HHHHHHHHGGGGCSSCCEEECCCCSSCCC
T ss_pred HHHHHHHHHHHhCCCceEEEecCCCCCCC
Confidence 2 2334444556666666 556665
No 143
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.00 E-value=2.1e-07 Score=77.25 Aligned_cols=41 Identities=17% Similarity=0.043 Sum_probs=18.1
Q ss_pred cCCcCCCEEecccCccccc-CChhhhCccccCceeccccccc
Q 047948 116 GLLTHLTVLHISRNQLNGS-IPQEVGQLTFLNHLILDLIFLI 156 (171)
Q Consensus 116 ~~l~~L~~L~ls~N~l~g~-~P~~~~~l~~L~~L~Ls~N~l~ 156 (171)
..+++|+.|++++|.+++. ++..+..+++|++|++++|+++
T Consensus 485 ~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it 526 (592)
T 3ogk_B 485 RGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRAS 526 (592)
T ss_dssp TCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCC
T ss_pred hcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCC
Confidence 3444444455544444432 2222334444555555555444
No 144
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=97.74 E-value=1e-05 Score=66.99 Aligned_cols=18 Identities=11% Similarity=0.071 Sum_probs=9.7
Q ss_pred CCCCCCcEEEeecCcccc
Q 047948 80 SSFPHLAYLVLYNNELFY 97 (171)
Q Consensus 80 ~~L~~L~~L~l~~n~l~g 97 (171)
..+++|+.|++++|.+.+
T Consensus 217 ~~~~~L~~L~L~~~~~~~ 234 (592)
T 3ogk_B 217 RNCRSLVSVKVGDFEILE 234 (592)
T ss_dssp HHCTTCCEEECSSCBGGG
T ss_pred hhCCCCcEEeccCccHHH
Confidence 345556666666555443
No 145
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=97.73 E-value=4e-06 Score=69.44 Aligned_cols=84 Identities=18% Similarity=0.170 Sum_probs=45.4
Q ss_pred CEEEEEcCCCccceecCCCCCC-CCCCCcEEEeecC-cccccccccccccccccCCccccCCcCCCEEecccCcccccCC
Q 047948 59 RVVGINLTSMSLNGTLLEFPFS-SFPHLAYLVLYNN-ELFYIILPQITNKLSGQIPSEIGLLTHLTVLHISRNQLNGSIP 136 (171)
Q Consensus 59 ~v~~L~l~~~~l~~~~p~~~l~-~L~~L~~L~l~~n-~l~g~~p~~~~n~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~P 136 (171)
++++|+++++.+++..+. .+. .+++|+.|++++| .+... .++..+..+++|++|++++|.+++..+
T Consensus 106 ~L~~L~L~~~~~~~~~~~-~l~~~~~~L~~L~L~~~~~~~~~-----------~l~~~~~~~~~L~~L~L~~~~i~~~~~ 173 (594)
T 2p1m_B 106 WLEEIRLKRMVVTDDCLE-LIAKSFKNFKVLVLSSCEGFSTD-----------GLAAIAATCRNLKELDLRESDVDDVSG 173 (594)
T ss_dssp TCCEEEEESCBCCHHHHH-HHHHHCTTCCEEEEESCEEEEHH-----------HHHHHHHHCTTCCEEECTTCEEECCCG
T ss_pred CCCeEEeeCcEEcHHHHH-HHHHhCCCCcEEeCCCcCCCCHH-----------HHHHHHHhCCCCCEEeCcCCccCCcch
Confidence 566777777666554443 343 4667777777766 33211 022223355666666666666654433
Q ss_pred hhhh----CccccCceeccccc
Q 047948 137 QEVG----QLTFLNHLILDLIF 154 (171)
Q Consensus 137 ~~~~----~l~~L~~L~Ls~N~ 154 (171)
..+. .+++|++|++++|.
T Consensus 174 ~~l~~~~~~~~~L~~L~l~~~~ 195 (594)
T 2p1m_B 174 HWLSHFPDTYTSLVSLNISCLA 195 (594)
T ss_dssp GGGGGSCTTCCCCCEEECTTCC
T ss_pred HHHHHHhhcCCcCcEEEecccC
Confidence 3332 44566666666654
No 146
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.61 E-value=0.00014 Score=56.19 Aligned_cols=37 Identities=8% Similarity=0.120 Sum_probs=28.1
Q ss_pred CCEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCccc
Q 047948 58 GRVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELF 96 (171)
Q Consensus 58 ~~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~ 96 (171)
.+++.|+|.. .++ .++...|.++++|+.++++.|.+.
T Consensus 101 ~~L~~l~L~~-~i~-~I~~~aF~~~~~L~~l~l~~n~i~ 137 (329)
T 3sb4_A 101 QTLEKVILSE-KIK-NIEDAAFKGCDNLKICQIRKKTAP 137 (329)
T ss_dssp TTCCC-CBCT-TCC-EECTTTTTTCTTCCEEEBCCSSCC
T ss_pred CCCcEEECCc-ccc-chhHHHhhcCcccceEEcCCCCcc
Confidence 3688888888 776 455448899999999999988765
No 147
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.59 E-value=2.8e-05 Score=55.44 Aligned_cols=85 Identities=9% Similarity=0.054 Sum_probs=63.1
Q ss_pred CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCc-ccccccccccccccccCCccccCC----cCCCEEecccCc-cc
Q 047948 59 RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNE-LFYIILPQITNKLSGQIPSEIGLL----THLTVLHISRNQ-LN 132 (171)
Q Consensus 59 ~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~-l~g~~p~~~~n~l~g~~p~~~~~l----~~L~~L~ls~N~-l~ 132 (171)
++++|+++++.++..--. .+..++.|+.|+|++|. ++.. --..++.+ ++|++|+++++. ++
T Consensus 62 ~L~~LDLs~~~Itd~GL~-~L~~~~~L~~L~L~~C~~ItD~------------gL~~L~~~~~~~~~L~~L~Ls~C~~IT 128 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFD-HMEGLQYVEKIRLCKCHYIEDG------------CLERLSQLENLQKSMLEMEIISCGNVT 128 (176)
T ss_dssp CEEEEEEESCCCCGGGGG-GGTTCSCCCEEEEESCTTCCHH------------HHHHHHTCHHHHHHCCEEEEESCTTCC
T ss_pred eEeEEeCcCCCccHHHHH-HhcCCCCCCEEEeCCCCccCHH------------HHHHHHhcccccCCCCEEEcCCCCcCC
Confidence 799999999998755444 67899999999999985 5421 11234554 479999999974 77
Q ss_pred ccCChhhhCccccCceeccccc-cc
Q 047948 133 GSIPQEVGQLTFLNHLILDLIF-LI 156 (171)
Q Consensus 133 g~~P~~~~~l~~L~~L~Ls~N~-l~ 156 (171)
..--..+.++++|++|++++.. ++
T Consensus 129 D~Gl~~L~~~~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 129 DKGIIALHHFRNLKYLFLSDLPGVK 153 (176)
T ss_dssp HHHHHHGGGCTTCCEEEEESCTTCC
T ss_pred HHHHHHHhcCCCCCEEECCCCCCCC
Confidence 5433457789999999998874 44
No 148
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=97.56 E-value=5.9e-06 Score=68.45 Aligned_cols=52 Identities=10% Similarity=-0.068 Sum_probs=31.7
Q ss_pred CcCCCEEecccCcccccCChhh-hCccccCceeccccccc-------cccchhhhccccc
Q 047948 118 LTHLTVLHISRNQLNGSIPQEV-GQLTFLNHLILDLIFLI-------FWMVQSLVLLAIW 169 (171)
Q Consensus 118 l~~L~~L~ls~N~l~g~~P~~~-~~l~~L~~L~Ls~N~l~-------~~~~~~L~~L~l~ 169 (171)
+++|+.|++++|.+++..+..+ ..+++|++|++++|.++ ...+++|+.|++.
T Consensus 455 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~ 514 (594)
T 2p1m_B 455 AKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMS 514 (594)
T ss_dssp CTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEE
T ss_pred chhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeee
Confidence 5667777777777665444444 45667777777777765 1224566666653
No 149
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.43 E-value=3.5e-05 Score=55.01 Aligned_cols=83 Identities=18% Similarity=0.117 Sum_probs=60.1
Q ss_pred CCCCCCCCcEEEeecC-cccccccccccccccccCCccccCCcCCCEEecccCccccc----CChhhhCccccCceeccc
Q 047948 78 PFSSFPHLAYLVLYNN-ELFYIILPQITNKLSGQIPSEIGLLTHLTVLHISRNQLNGS----IPQEVGQLTFLNHLILDL 152 (171)
Q Consensus 78 ~l~~L~~L~~L~l~~n-~l~g~~p~~~~n~l~g~~p~~~~~l~~L~~L~ls~N~l~g~----~P~~~~~l~~L~~L~Ls~ 152 (171)
.+...+.|++|++++| .+...-- ..+...+...+.|++|+|++|.+... +...+...++|++|+|++
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~--------~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~ 102 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTL--------KACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVES 102 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHH--------HHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCS
T ss_pred HHhcCCCCCEEEecCCCCCCHHHH--------HHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcC
Confidence 4567789999999999 7753110 02334566778999999999999753 334455668899999999
Q ss_pred cccc----------cccchhhhcccc
Q 047948 153 IFLI----------FWMVQSLVLLAI 168 (171)
Q Consensus 153 N~l~----------~~~~~~L~~L~l 168 (171)
|.|. ....++|++|++
T Consensus 103 N~i~~~g~~~l~~~L~~n~~L~~L~L 128 (185)
T 1io0_A 103 NFISGSGILALVEALQSNTSLIELRI 128 (185)
T ss_dssp SCCCHHHHHHHHHGGGGCSSCCEEEC
T ss_pred CcCCHHHHHHHHHHHHhCCCceEEEe
Confidence 9998 233356888887
No 150
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.14 E-value=0.0001 Score=58.27 Aligned_cols=53 Identities=13% Similarity=0.045 Sum_probs=32.4
Q ss_pred CCcCCCEEecccCcccccCChhhh---CccccCceecccccccc----------ccchhhhccccc
Q 047948 117 LLTHLTVLHISRNQLNGSIPQEVG---QLTFLNHLILDLIFLIF----------WMVQSLVLLAIW 169 (171)
Q Consensus 117 ~l~~L~~L~ls~N~l~g~~P~~~~---~l~~L~~L~Ls~N~l~~----------~~~~~L~~L~l~ 169 (171)
.+++|++|++.+|.+.+..+..+. .+++|++|+|+.|.+.. ..+++|+.|++.
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~ 315 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMK 315 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECC
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECC
Confidence 356777777777776654443333 35677777777777762 223556666653
No 151
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=96.96 E-value=0.0008 Score=47.83 Aligned_cols=75 Identities=9% Similarity=0.089 Sum_probs=54.8
Q ss_pred CCCcEEEeecCcccccccccccccccccCCccccCCcCCCEEecccCc-ccccCChhhhCc----cccCceeccccc-cc
Q 047948 83 PHLAYLVLYNNELFYIILPQITNKLSGQIPSEIGLLTHLTVLHISRNQ-LNGSIPQEVGQL----TFLNHLILDLIF-LI 156 (171)
Q Consensus 83 ~~L~~L~l~~n~l~g~~p~~~~n~l~g~~p~~~~~l~~L~~L~ls~N~-l~g~~P~~~~~l----~~L~~L~Ls~N~-l~ 156 (171)
-.|+.||++++.++.. | -..+..+++|+.|+|+++. ++..--..+..+ ++|++|+|+++. ++
T Consensus 61 ~~L~~LDLs~~~Itd~----------G--L~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~IT 128 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSI----------G--FDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVT 128 (176)
T ss_dssp CCEEEEEEESCCCCGG----------G--GGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCC
T ss_pred ceEeEEeCcCCCccHH----------H--HHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCC
Confidence 4699999999987621 1 1346789999999999985 664433445553 479999999874 77
Q ss_pred ------cccchhhhccccc
Q 047948 157 ------FWMVQSLVLLAIW 169 (171)
Q Consensus 157 ------~~~~~~L~~L~l~ 169 (171)
...+++|+.|++.
T Consensus 129 D~Gl~~L~~~~~L~~L~L~ 147 (176)
T 3e4g_A 129 DKGIIALHHFRNLKYLFLS 147 (176)
T ss_dssp HHHHHHGGGCTTCCEEEEE
T ss_pred HHHHHHHhcCCCCCEEECC
Confidence 4556788888873
No 152
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=96.82 E-value=0.0034 Score=50.10 Aligned_cols=39 Identities=10% Similarity=-0.001 Sum_probs=20.8
Q ss_pred ccccCCcCCCEEecccCccc-----ccCChhhhCccccCceecc
Q 047948 113 SEIGLLTHLTVLHISRNQLN-----GSIPQEVGQLTFLNHLILD 151 (171)
Q Consensus 113 ~~~~~l~~L~~L~ls~N~l~-----g~~P~~~~~l~~L~~L~Ls 151 (171)
..|..+++|+.+++.+|.+. ..-+..|.+|++|+.+++.
T Consensus 265 ~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~ 308 (401)
T 4fdw_A 265 RAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP 308 (401)
T ss_dssp TTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC
T ss_pred hHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC
Confidence 34555666666666655543 1223345555556665555
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=96.81 E-value=0.00025 Score=56.04 Aligned_cols=48 Identities=21% Similarity=0.311 Sum_probs=37.4
Q ss_pred CCcCCCEEecccCccccc----CChhhhCccccCceeccccccccccchhhh
Q 047948 117 LLTHLTVLHISRNQLNGS----IPQEVGQLTFLNHLILDLIFLIFWMVQSLV 164 (171)
Q Consensus 117 ~l~~L~~L~ls~N~l~g~----~P~~~~~l~~L~~L~Ls~N~l~~~~~~~L~ 164 (171)
.+++|+.|+|+.|.+++. ++..+..+++|+.|+|+.|.++......|.
T Consensus 277 ~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~ 328 (362)
T 2ra8_A 277 ILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQ 328 (362)
T ss_dssp SGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHH
T ss_pred cCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHH
Confidence 578999999999999864 444456789999999999999844444443
No 154
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.60 E-value=0.0018 Score=43.57 Aligned_cols=55 Identities=24% Similarity=0.313 Sum_probs=26.5
Q ss_pred EEEcCCCccc-eecCCCCCCCCCCCcEEEeecCcccccccccccccccccCC-ccccCCcCCCEEecccCccc
Q 047948 62 GINLTSMSLN-GTLLEFPFSSFPHLAYLVLYNNELFYIILPQITNKLSGQIP-SEIGLLTHLTVLHISRNQLN 132 (171)
Q Consensus 62 ~L~l~~~~l~-~~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~~n~l~g~~p-~~~~~l~~L~~L~ls~N~l~ 132 (171)
.++-++++++ ..+|. .+. ..|+.|+|++|+++ .+| ..|..+++|+.|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~-~lp--~~l~~L~Ls~N~l~-------------~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPT-AFP--VDTTELVLTGNNLT-------------ALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCS-CCC--TTCSEEECTTSCCS-------------SCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCC-CCC--cCCCEEECCCCcCC-------------ccChhhhhhccccCEEEecCCCee
Confidence 3444455543 23443 221 24566666666654 122 23445556666666666543
No 155
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=96.35 E-value=0.01 Score=47.34 Aligned_cols=94 Identities=14% Similarity=0.116 Sum_probs=51.9
Q ss_pred CEEEEEcCCCccceecCCCCCCCCCCCcEEEeecCcccc----cccc-cc-----------cccccccCCccccCCcCCC
Q 047948 59 RVVGINLTSMSLNGTLLEFPFSSFPHLAYLVLYNNELFY----IILP-QI-----------TNKLSGQIPSEIGLLTHLT 122 (171)
Q Consensus 59 ~v~~L~l~~~~l~~~~p~~~l~~L~~L~~L~l~~n~l~g----~~p~-~~-----------~n~l~g~~p~~~~~l~~L~ 122 (171)
.++.+.+. +.++ .++...|..++.|+.+++.+|.+.. .++. .+ .+.+...-...|..+++|+
T Consensus 249 ~L~~i~lp-~~i~-~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~i~~I~~~aF~~c~~L~ 326 (401)
T 4fdw_A 249 GITTVKLP-NGVT-NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPESIRILGQGLLGGNRKVT 326 (401)
T ss_dssp CCSEEEEE-TTCC-EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTTCCEECTTTTTTCCSCC
T ss_pred CccEEEeC-CCcc-EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCceEEEhhhhhcCCCCcc
Confidence 34555552 3344 3444378888888888888776541 1111 11 1222222223456667777
Q ss_pred EEecccCcccccCChhhhCccccCceeccccccc
Q 047948 123 VLHISRNQLNGSIPQEVGQLTFLNHLILDLIFLI 156 (171)
Q Consensus 123 ~L~ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~ 156 (171)
.+.+..| ++..-+..|.++ +|+.+++.+|.+.
T Consensus 327 ~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~ 358 (401)
T 4fdw_A 327 QLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPP 358 (401)
T ss_dssp EEEECTT-CCEECTTSSSSS-CCCEEEECCSSCC
T ss_pred EEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCc
Confidence 7777544 553344556666 7777777777654
No 156
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.62 E-value=0.018 Score=38.49 Aligned_cols=37 Identities=22% Similarity=0.100 Sum_probs=24.3
Q ss_pred CCCEEecccCcccccCChhhhCccccCceeccccccc
Q 047948 120 HLTVLHISRNQLNGSIPQEVGQLTFLNHLILDLIFLI 156 (171)
Q Consensus 120 ~L~~L~ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~ 156 (171)
+|+.|+|++|+++..-+..|..+++|++|+|++|.+.
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 5677777777777333334566777777777777665
No 157
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.33 E-value=0.0056 Score=44.25 Aligned_cols=87 Identities=16% Similarity=0.133 Sum_probs=57.6
Q ss_pred CCEEEEEcCCC-ccce----ecCCCCCCCCCCCcEEEeecCcccccccccccccccccCCccccCCcCCCEEecccCccc
Q 047948 58 GRVVGINLTSM-SLNG----TLLEFPFSSFPHLAYLVLYNNELFYIILPQITNKLSGQIPSEIGLLTHLTVLHISRNQLN 132 (171)
Q Consensus 58 ~~v~~L~l~~~-~l~~----~~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~~n~l~g~~p~~~~~l~~L~~L~ls~N~l~ 132 (171)
..++.|+|.++ .+.. .+-. .+..=+.|+.|+|++|.+...-- ..+-..+..-+.|+.|+|+.|++.
T Consensus 41 ~~L~~L~L~~nn~igd~ga~~la~-aL~~N~~L~~L~L~~n~igd~ga--------~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 41 TDLKEVNINNMKRVSKERIRSLIE-AACNSKHIEKFSLANTAISDSEA--------RGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHH-HHTTCSCCCEEECTTSCCBHHHH--------TTHHHHHHHCSSCCEEECCSSBCC
T ss_pred CCccEEECCCCCCCCHHHHHHHHH-HHhhCCCcCEEEccCCCCChHHH--------HHHHHHHhcCCccCeEecCCCcCC
Confidence 46899999985 6642 2333 46667889999999998862110 012233444578999999999998
Q ss_pred ccCC----hhhhCccccCceecccc
Q 047948 133 GSIP----QEVGQLTFLNHLILDLI 153 (171)
Q Consensus 133 g~~P----~~~~~l~~L~~L~Ls~N 153 (171)
..-- +.+..-+.|++|+|++|
T Consensus 112 ~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 112 PELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred HHHHHHHHHHHhhCCceeEEECCCC
Confidence 5322 23444467999999865
No 158
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=94.58 E-value=0.092 Score=41.27 Aligned_cols=55 Identities=13% Similarity=0.005 Sum_probs=33.8
Q ss_pred ccccCCcCCCEEecccCcccccCChhhhCccccCceeccccccc---cccchhhhcccc
Q 047948 113 SEIGLLTHLTVLHISRNQLNGSIPQEVGQLTFLNHLILDLIFLI---FWMVQSLVLLAI 168 (171)
Q Consensus 113 ~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~---~~~~~~L~~L~l 168 (171)
..|..+.+|+.+.+..+ ++-.-..+|.+|++|+.+++.+|... +....+|+.+.+
T Consensus 328 ~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~~~~~~~~~L~~i~i 385 (394)
T 4gt6_A 328 DAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQWNAISTDSGLQNLPV 385 (394)
T ss_dssp TTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHHHTCBCCCCC-----
T ss_pred hHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeehhhhhccCCCCEEEe
Confidence 45677888888888654 55233456788888888888877654 333445555554
No 159
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=93.83 E-value=0.0098 Score=42.94 Aligned_cols=90 Identities=10% Similarity=0.095 Sum_probs=53.9
Q ss_pred CCEEEEEcCCCccceecCCCC----CCCCCCCcEEEeecCcccccccccccccccccCCccccCCcCCCEEecccC---c
Q 047948 58 GRVVGINLTSMSLNGTLLEFP----FSSFPHLAYLVLYNNELFYIILPQITNKLSGQIPSEIGLLTHLTVLHISRN---Q 130 (171)
Q Consensus 58 ~~v~~L~l~~~~l~~~~p~~~----l~~L~~L~~L~l~~n~l~g~~p~~~~n~l~g~~p~~~~~l~~L~~L~ls~N---~ 130 (171)
..++.|+|++|.+....-. . +..=+.|+.|+|+.|.+...-- -.+-..+..-+.|+.|+|++| .
T Consensus 70 ~~L~~L~L~~n~igd~ga~-alA~aL~~N~tL~~L~L~~N~Ig~~Ga--------~ala~aL~~N~tL~~L~L~n~~~~~ 140 (197)
T 1pgv_A 70 KHIEKFSLANTAISDSEAR-GLIELIETSPSLRVLNVESNFLTPELL--------ARLLRSTLVTQSIVEFKADNQRQSV 140 (197)
T ss_dssp SCCCEEECTTSCCBHHHHT-THHHHHHHCSSCCEEECCSSBCCHHHH--------HHHHHHTTTTCCCSEEECCCCSSCC
T ss_pred CCcCEEEccCCCCChHHHH-HHHHHHhcCCccCeEecCCCcCCHHHH--------HHHHHHHhhCCceeEEECCCCcCcC
Confidence 3688899999888743222 2 2234678889999888863200 012233444566889998765 3
Q ss_pred cccc----CChhhhCccccCceeccccccc
Q 047948 131 LNGS----IPQEVGQLTFLNHLILDLIFLI 156 (171)
Q Consensus 131 l~g~----~P~~~~~l~~L~~L~Ls~N~l~ 156 (171)
+... +-+.+..=++|+.|+++.|.+.
T Consensus 141 ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 141 LGNQVEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp CCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred cCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 3322 2233444467888888877654
No 160
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=93.60 E-value=0.28 Score=38.08 Aligned_cols=37 Identities=14% Similarity=0.107 Sum_probs=17.5
Q ss_pred ccCCcCCCEEecccCcccccCChhhhCccccCceecc
Q 047948 115 IGLLTHLTVLHISRNQLNGSIPQEVGQLTFLNHLILD 151 (171)
Q Consensus 115 ~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~L~Ls 151 (171)
|..+.+|+.+.+..+.++-.-...|.++.+|+.+.|.
T Consensus 282 F~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp 318 (379)
T 4h09_A 282 CSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLP 318 (379)
T ss_dssp TTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECC
T ss_pred cccccccccccccccccceehhhhhcCCCCCCEEEcC
Confidence 3444555555555444442222344455555555554
No 161
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=91.21 E-value=0.42 Score=37.43 Aligned_cols=40 Identities=13% Similarity=-0.015 Sum_probs=23.6
Q ss_pred ccccCCcCCCEEecccCcccccCChhhhCccccCceecccc
Q 047948 113 SEIGLLTHLTVLHISRNQLNGSIPQEVGQLTFLNHLILDLI 153 (171)
Q Consensus 113 ~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~L~Ls~N 153 (171)
..|..+.+|+.+.+..+ ++-.-..+|.+|++|+.+++..+
T Consensus 337 ~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 337 RSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp TTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred HhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence 34566667777776655 44233345666777777766543
No 162
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=91.15 E-value=0.67 Score=35.87 Aligned_cols=62 Identities=13% Similarity=0.081 Sum_probs=41.6
Q ss_pred CCCCCCCCcEEEeecCcccccccccccccccccC-CccccCCcCCCEEecccCcccccCChhhhCccccCceecccc
Q 047948 78 PFSSFPHLAYLVLYNNELFYIILPQITNKLSGQI-PSEIGLLTHLTVLHISRNQLNGSIPQEVGQLTFLNHLILDLI 153 (171)
Q Consensus 78 ~l~~L~~L~~L~l~~n~l~g~~p~~~~n~l~g~~-p~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~L~Ls~N 153 (171)
.|..+..|+.+.+..+.++ .+ ...|..+.+|+.+.+..+ ++-.-..+|.+|++|+.+.+..+
T Consensus 281 aF~~c~~L~~i~l~~~~i~-------------~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 281 LCSGCSNLTKVVMDNSAIE-------------TLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp TTTTCTTCCEEEECCTTCC-------------EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred ccccccccccccccccccc-------------eehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence 4555666666666555443 22 246788899999999754 66233456889999999988654
No 163
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=90.54 E-value=0.98 Score=35.27 Aligned_cols=55 Identities=11% Similarity=0.093 Sum_probs=39.1
Q ss_pred ccccCCcCCCEEecccCcccccCChhhhCccccCceeccccc--cc---cccchhhhcccc
Q 047948 113 SEIGLLTHLTVLHISRNQLNGSIPQEVGQLTFLNHLILDLIF--LI---FWMVQSLVLLAI 168 (171)
Q Consensus 113 ~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~--l~---~~~~~~L~~L~l 168 (171)
..|..+.+|+.+++..+ ++-.-..+|.+|.+|+.+.+..+- +. +....+|+.+.+
T Consensus 305 ~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~sv~~I~~~aF~~C~~L~~i~~ 364 (394)
T 4gt6_A 305 SVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSSVTKIPESAFSNCTALNNIEY 364 (394)
T ss_dssp TTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTTCCBCCGGGGTTCTTCCEEEE
T ss_pred eeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcccCEEhHhHhhCCCCCCEEEE
Confidence 45778899999999764 553444578899999999987551 21 556677777665
No 164
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=89.35 E-value=1.5 Score=34.17 Aligned_cols=54 Identities=15% Similarity=0.079 Sum_probs=36.3
Q ss_pred ccccCCcCCCEEecccCcccccCChhhhCccccCceeccccccc------cccchhhhcccc
Q 047948 113 SEIGLLTHLTVLHISRNQLNGSIPQEVGQLTFLNHLILDLIFLI------FWMVQSLVLLAI 168 (171)
Q Consensus 113 ~~~~~l~~L~~L~ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~------~~~~~~L~~L~l 168 (171)
..|..+.+|+.+++..+ ++-.-..+|.+|++|+.+.+..| ++ +..+.+|+.+.+
T Consensus 314 ~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~l 373 (394)
T 4fs7_A 314 EAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVEL 373 (394)
T ss_dssp TTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEE
T ss_pred hhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEE
Confidence 35677888888888644 66333456888888998888766 33 455556666554
No 165
>3ox7_P MH027; urokinase-type plasminogen activator, peptidyl inhibitor, pharmacophore, hydrolase, hydrolase-hydrolase inhibitor COM; HET: PG4; 1.58A {Homo sapiens} PDB: 3oy5_P 3oy6_P
Probab=40.94 E-value=8.9 Score=16.68 Aligned_cols=10 Identities=30% Similarity=1.109 Sum_probs=7.2
Q ss_pred CCCCccccee
Q 047948 44 ISPCAWSGIH 53 (171)
Q Consensus 44 ~~~c~w~gv~ 53 (171)
...|+|+|..
T Consensus 5 dgacswrgle 14 (23)
T 3ox7_P 5 DGACSWRGLE 14 (26)
T ss_pred Ccccccccch
Confidence 3469999864
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=27.60 E-value=78 Score=19.43 Aligned_cols=42 Identities=12% Similarity=0.010 Sum_probs=28.2
Q ss_pred cCCCCCCCCCCCcEEEeecCcccccccccccccccccC-CccccCCcCCCEEecccC
Q 047948 74 LLEFPFSSFPHLAYLVLYNNELFYIILPQITNKLSGQI-PSEIGLLTHLTVLHISRN 129 (171)
Q Consensus 74 ~p~~~l~~L~~L~~L~l~~n~l~g~~p~~~~n~l~g~~-p~~~~~l~~L~~L~ls~N 129 (171)
+....|.+++.|+.+.+..+=- .| ...|..+.+|+.+.+...
T Consensus 11 I~~~aF~~c~~L~~i~iP~~v~--------------~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 11 MDKSLFAGNTVIREITVQPNIG--------------LLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp SCSCTTTTCTTCCCEEECTTSS--------------CCCTTSSTTCTTCCCEEECCS
T ss_pred ecHHHhcCCCCCcEEEcCCchh--------------eEcHHHHhccCCccEEEEcCC
Confidence 3433788888898888876521 11 146778888888887653
Done!