BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047949
(388 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1UT4|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT4|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT7|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT7|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|4DUL|A Chain A, Anac019 Nac Domain Crystal Form Iv
pdb|4DUL|B Chain B, Anac019 Nac Domain Crystal Form Iv
Length = 171
Score = 92.0 bits (227), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 61/154 (39%), Positives = 78/154 (50%), Gaps = 15/154 (9%)
Query: 6 GFRFYPTDEEIIC-LLKMKRLDPGFSVRTIKEIDFYGFEPWELPCHSEIQSEEEVWYFFC 64
GFRFYPTDEE++ L K FS++ I EID Y F+PW LP + +E WYFF
Sbjct: 20 GFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKE--WYFFS 77
Query: 65 EPDYKYAKSKRVNRGTKEGTWKKTGNGSKIKRKYSTE--VIGTKRILSFSRHDSASKKAK 122
D KY R NR G WK TG I STE +G K+ L F A K K
Sbjct: 78 PRDRKYPNGSRPNRVAGSGYWKATGTDKII----STEGQRVGIKKALVFY-IGKAPKGTK 132
Query: 123 TEWVMHEIAV-----EDDPVYKKDFVVCRLERKR 151
T W+MHE + + D+V+CR+ +K+
Sbjct: 133 TNWIMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQ 166
>pdb|3SWM|A Chain A, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|B Chain B, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|C Chain C, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|D Chain D, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWP|A Chain A, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|B Chain B, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|C Chain C, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|D Chain D, Anac019 Nac Domain In Complex With Dna
Length = 174
Score = 91.7 bits (226), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 61/154 (39%), Positives = 78/154 (50%), Gaps = 15/154 (9%)
Query: 6 GFRFYPTDEEIIC-LLKMKRLDPGFSVRTIKEIDFYGFEPWELPCHSEIQSEEEVWYFFC 64
GFRFYPTDEE++ L K FS++ I EID Y F+PW LP + +E WYFF
Sbjct: 23 GFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKE--WYFFS 80
Query: 65 EPDYKYAKSKRVNRGTKEGTWKKTGNGSKIKRKYSTE--VIGTKRILSFSRHDSASKKAK 122
D KY R NR G WK TG I STE +G K+ L F A K K
Sbjct: 81 PRDRKYPNGSRPNRVAGSGYWKATGTDKII----STEGQRVGIKKALVFY-IGKAPKGTK 135
Query: 123 TEWVMHEIAV-----EDDPVYKKDFVVCRLERKR 151
T W+MHE + + D+V+CR+ +K+
Sbjct: 136 TNWIMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQ 169
>pdb|3ULX|A Chain A, Crystal Structural Of The Conserved Domain Of Rice
Stress-Responsive Nac1
Length = 174
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 56/164 (34%), Positives = 79/164 (48%), Gaps = 16/164 (9%)
Query: 1 MNSLVGFRFYPTDEEII-CLLKMKRLDPGFSVRTIKEIDFYGFEPWELPCHSEIQSEEEV 59
+N GFRF+PTD+E++ L K V I E+D Y F+PW+LP + + E
Sbjct: 13 LNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFGARE-- 70
Query: 60 WYFFCEPDYKYAKSKRVNRGTKEGTWKKTGNGSKIKRKYSTEVIGTKRILSFSRHDSASK 119
WYFF D KY R NR G WK TG + + T +G K+ L F A +
Sbjct: 71 WYFFTPRDRKYPNGSRPNRAAGNGYWKATGADKPVAPRGRT--LGIKKALVFY-AGKAPR 127
Query: 120 KAKTEWVMHEIAVEDDPVYKK----------DFVVCRLERKRDQ 153
KT+W+MHE + D D+V+CRL K+++
Sbjct: 128 GVKTDWIMHEYRLADAGRAAAGAKKGSLRLDDWVLCRLYNKKNE 171
>pdb|1FS9|A Chain A, Cytochrome C Nitrite Reductase From Wolinella
Succinogenes-Azide Complex
Length = 507
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 27/60 (45%)
Query: 170 GVSTSDKDQPSQNLTSKRKRDQKLGVSISDQDQSSQNLTSKRNHLAEDTNRNHFTRKEDL 229
GVS +D P + + D K+G + + D+S N + +D + F RKE L
Sbjct: 292 GVSCADCHMPYTQEGAVKYSDHKVGNPLDNMDKSCMNCHRESEQKLKDIVKQKFERKEFL 351
>pdb|1FS7|A Chain A, Cytochrome C Nitrite Reductase From Wolinella Succinogenes
pdb|1FS8|A Chain A, Cytochrome C Nitrite Reductase From Wolinella
Succinogenes-Sulfate Complex
pdb|2E80|A Chain A, Cytochrome C Nitrite Reductase From Wolinella Succinogenes
With Bound Substrate Nitrite
pdb|2E81|A Chain A, Cytochrome C Nitrite Reductase From Wolinella Succinogenes
With Bound Intermediate Hydroxylamine
pdb|3BNF|A Chain A, W. Succinogenes Nrfa Sulfite Complex
Length = 485
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 27/60 (45%)
Query: 170 GVSTSDKDQPSQNLTSKRKRDQKLGVSISDQDQSSQNLTSKRNHLAEDTNRNHFTRKEDL 229
GVS +D P + + D K+G + + D+S N + +D + F RKE L
Sbjct: 270 GVSCADCHMPYTQEGAVKYSDHKVGNPLDNMDKSCMNCHRESEQKLKDIVKQKFERKEFL 329
>pdb|3BNG|A Chain A, W. Succinogenes Nrfa Y218f
pdb|3BNH|A Chain A, W. Succinogenes Nrfa Y218f Nitrite Complex
pdb|3BNJ|A Chain A, W. Succinogenes Nrfa Y218f Sulfite Complex
Length = 485
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 27/60 (45%)
Query: 170 GVSTSDKDQPSQNLTSKRKRDQKLGVSISDQDQSSQNLTSKRNHLAEDTNRNHFTRKEDL 229
GVS +D P + + D K+G + + D+S N + +D + F RKE L
Sbjct: 270 GVSCADCHMPYTQEGAVKYSDHKVGNPLDNMDKSCMNCHRESEQKLKDIVKQKFERKEFL 329
>pdb|3A8R|A Chain A, The Structure Of The N-Terminal Regulatory Domain Of A
Plant Nadph Oxidase
pdb|3A8R|B Chain B, The Structure Of The N-Terminal Regulatory Domain Of A
Plant Nadph Oxidase
Length = 179
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 64/154 (41%), Gaps = 11/154 (7%)
Query: 147 LERKRDQMKFGVVSAKRKQAKKLGVSTSDKDQPSQNLTSKRKRDQKLGVSISDQDQSSQN 206
+E++ +Q++ V + + K +G+ SD+ + RKR I Q +
Sbjct: 30 VEKRFNQLQVDGVLLRSRFGKCIGMDGSDEFAVQMFDSLARKR------GIVKQVLTKDE 83
Query: 207 LTSKRNHLAEDTNRNHFTRKEDLVSNNNHVTENGVLVSEVQARDHSISHSRNRVSENIVE 266
L L + N D+V N +G L +E ++S S N++S+ I E
Sbjct: 84 LKDFYEQLTDQGFDNRLRTFFDMVDKN----ADGRLTAEEVKEIIALSASANKLSK-IKE 138
Query: 267 NSVEAEARQLLEFNPQGGGYTGLNDASFSALQSP 300
+ E A + E +P GY + D LQSP
Sbjct: 139 RADEYTALIMEELDPTNLGYIEMEDLEALLLQSP 172
>pdb|2VDW|B Chain B, Guanosine N7 Methyl-Transferase Sub-Complex (D1-D12) Of
The Vaccinia Virus Mrna Capping Enzyme
pdb|2VDW|D Chain D, Guanosine N7 Methyl-Transferase Sub-Complex (D1-D12) Of
The Vaccinia Virus Mrna Capping Enzyme
pdb|2VDW|F Chain F, Guanosine N7 Methyl-Transferase Sub-Complex (D1-D12) Of
The Vaccinia Virus Mrna Capping Enzyme
pdb|2VDW|H Chain H, Guanosine N7 Methyl-Transferase Sub-Complex (D1-D12) Of
The Vaccinia Virus Mrna Capping Enzyme
Length = 287
Score = 28.5 bits (62), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Query: 214 LAEDTNRNH-FTRKEDLVSNNNHVTENGVLVSE 245
+A+ + RN F R+ D + +NNH+TEN + +S+
Sbjct: 100 VADLSARNKLFKRERDAIKSNNHLTENNLYISD 132
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.130 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,398,532
Number of Sequences: 62578
Number of extensions: 459930
Number of successful extensions: 708
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 691
Number of HSP's gapped (non-prelim): 13
length of query: 388
length of database: 14,973,337
effective HSP length: 101
effective length of query: 287
effective length of database: 8,652,959
effective search space: 2483399233
effective search space used: 2483399233
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (24.6 bits)