Query 047949
Match_columns 388
No_of_seqs 181 out of 891
Neff 4.4
Searched_HMMs 46136
Date Fri Mar 29 04:52:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047949.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047949hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02365 NAM: No apical merist 100.0 1.1E-42 2.5E-47 299.0 6.3 127 3-133 1-129 (129)
2 KOG3238 Chloride ion current i 22.9 63 0.0014 31.4 2.3 61 4-64 110-171 (216)
3 PHA00692 hypothetical protein 21.5 34 0.00075 27.3 0.2 9 2-10 36-44 (74)
4 KOG1150 Predicted molecular ch 19.6 37 0.0008 33.2 0.1 18 327-344 211-228 (250)
5 cd07557 trimeric_dUTPase Trime 19.1 59 0.0013 26.0 1.2 24 357-380 44-68 (92)
6 PF08260 Kinin: Insect kinin p 17.9 51 0.0011 16.6 0.3 6 331-336 2-7 (8)
7 PF14382 ECR1_N: Exosome compl 17.7 92 0.002 22.3 1.7 22 359-380 15-36 (39)
8 PHA03123 dUTPase; Provisional 16.2 94 0.002 32.9 2.1 19 364-382 118-136 (402)
9 PLN03109 ETHYLENE-INSENSITIVE3 13.5 7.4E+02 0.016 27.6 7.8 48 245-299 465-512 (599)
10 PHA03126 dUTPase; Provisional 13.1 1.2E+02 0.0026 31.3 1.9 35 347-382 84-118 (326)
No 1
>PF02365 NAM: No apical meristem (NAM) protein; InterPro: IPR003441 The NAC domain (for Petunia hybrida (Petunia) NAM and for Arabidopsis ATAF1, ATAF2, and CUC2) is an N-terminal module of ~160 amino acids, which is found in proteins of the NAC family of plant-specific transcriptional regulators (no apical meristem (NAM) proteins) []. NAC proteins are involved in developmental processes, including formation of the shoot apical meristem, floral organs and lateral shoots, as well as in plant hormonal control and defence. The NAC domain is accompanied by diverse C-terminal transcriptional activation domains. The NAC domain has been shown to be a DNA-binding domain (DBD) and a dimerization domain [,]. The NAC domain can be subdivided into five subdomains (A-E). Each subdomain is distinguishable by blocks of heterogeneous amino acids or gaps. While the NAC domains were rich in basic amino acids (R, K and H) as a whole, the distribution of positive and negative amino acids in each subdomain were unequal. Subdomains C and D are rich in basic amino acids but poor in acidic amino acids, while subdomain B contains a high proportion of acidic amino acids. Putative nuclear localization signals (NLS) have been detected in subdomains C and D []. The DBD is contained within a 60 amino acid region located within subdomains D and E []. The overall structure of the NAC domain monomer consists of a very twisted antiparallel beta-sheet, which packs against an N-terminal alpha-helix on one side and one shorter helix on the other side surrounded by a few helical elements. The structure suggests that the NAC domain mediates dimerization through conserved interactions including a salt bridge, and DNA binding through the NAC dimer face rich in positive charges [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1UT4_A 3SWM_B 4DUL_B 3SWP_D 1UT7_B 3ULX_A.
Probab=100.00 E-value=1.1e-42 Score=298.96 Aligned_cols=127 Identities=42% Similarity=0.734 Sum_probs=95.2
Q ss_pred CCCCceecCCHHHHHH-HHHHhHcCCCCCc-ccEEeccCCCCCCCCCCCCCcccCCCceEEEeecccccccCCCccccCC
Q 047949 3 SLVGFRFYPTDEEIIC-LLKMKRLDPGFSV-RTIKEIDFYGFEPWELPCHSEIQSEEEVWYFFCEPDYKYAKSKRVNRGT 80 (388)
Q Consensus 3 LPpGFRF~PTDEELV~-YL~~Ki~G~plp~-~~I~evDVY~~ePWdLP~~s~~~g~d~eWYFFspr~rKy~nG~R~nRaT 80 (388)
|||||||+|||+|||. ||++|+.|.+++. .+|+++|||++|||+||+. ..+++++||||+++.++++++.|.+|++
T Consensus 1 LP~G~rF~PtD~ELi~~yL~~k~~g~~~~~~~~i~~~Diy~~~P~~L~~~--~~~~~~~~yFF~~~~~~~~~~~r~~R~~ 78 (129)
T PF02365_consen 1 LPPGFRFRPTDEELINHYLRPKILGEPLPCEDVIHDVDIYSAHPWELPAK--FKGGDEEWYFFSPRKKKYPNGGRPNRVT 78 (129)
T ss_dssp --TTEEE---HHHHHHCTHHHHHTT-HHCS-CHSEE--GGGS-GGGCHHH--SSS-SSEEEEEEE----------S-EEE
T ss_pred CCCceEecCChHHHHHHHHHHHhcCCCCCcccceeecccCccChHHhhhh--ccCCCceEEEEEecccccCCcccccccc
Confidence 8999999999999999 9999999999887 7999999999999999942 2234789999999999999999999999
Q ss_pred CCceEEecCCCceEEeCCCceEEEEEEEEEEEeecCCCCCCCcCeEEEEEEeC
Q 047949 81 KEGTWKKTGNGSKIKRKYSTEVIGTKRILSFSRHDSASKKAKTEWVMHEIAVE 133 (388)
Q Consensus 81 g~GyWKatGkdk~I~~~~~g~vIG~KKTLvFY~~Grap~G~KT~WvMhEYrL~ 133 (388)
++|+||++|+.++|... ++.+||+|++|+||. ++.+++.+|+|+||||+|.
T Consensus 79 ~~G~Wk~~g~~~~i~~~-~g~~iG~k~~l~f~~-~~~~~~~kt~W~M~EY~L~ 129 (129)
T PF02365_consen 79 GGGYWKSTGKEKPIKDP-GGKVIGFKKTLVFYS-GKSPNGKKTGWVMHEYSLE 129 (129)
T ss_dssp TTEEEEEECEEEEEEE--TTCEEEEEEEEEEEE-SSTTS-EEEEEEEEEEEE-
T ss_pred cceEEeecccccccccc-cceeeeeEEEEEEEe-ccCCCCCcCCeEEEEEEeC
Confidence 99999999999999996 448999999999998 8888999999999999984
No 2
>KOG3238 consensus Chloride ion current inducer protein [Inorganic ion transport and metabolism]
Probab=22.91 E-value=63 Score=31.36 Aligned_cols=61 Identities=18% Similarity=0.267 Sum_probs=38.9
Q ss_pred CCCceecCCHHHHHH-HHHHhHcCCCCCcccEEeccCCCCCCCCCCCCCcccCCCceEEEee
Q 047949 4 LVGFRFYPTDEEIIC-LLKMKRLDPGFSVRTIKEIDFYGFEPWELPCHSEIQSEEEVWYFFC 64 (388)
Q Consensus 4 PpGFRF~PTDEELV~-YL~~Ki~G~plp~~~I~evDVY~~ePWdLP~~s~~~g~d~eWYFFs 64 (388)
--+|||+|+|.--.. ---.......+-+....+.|-|.-+=|+.-+....+++...||=+.
T Consensus 110 i~e~rfvpsDk~~l~a~f~qfcecqel~p~P~ED~~~~dgee~~mea~d~~~gDs~~~~t~d 171 (216)
T KOG3238|consen 110 ITEFRFVPSDKSALEAMFTQFCECQELNPDPDEDEDDYDGEEYDMEAHDAGQGDSPNSYTYD 171 (216)
T ss_pred cccceecCCchhHHHHHHHHHHhhhhcCCCccccccccccchhhhhhhhccCCCCccccccc
Confidence 357999999988777 4444444444444445666777777777765555555566666553
No 3
>PHA00692 hypothetical protein
Probab=21.45 E-value=34 Score=27.26 Aligned_cols=9 Identities=44% Similarity=0.600 Sum_probs=7.0
Q ss_pred CCCCCceec
Q 047949 2 NSLVGFRFY 10 (388)
Q Consensus 2 ~LPpGFRF~ 10 (388)
..||||||-
T Consensus 36 eyppgfrfg 44 (74)
T PHA00692 36 EYPPGFRFG 44 (74)
T ss_pred ecCCCcccc
Confidence 468999985
No 4
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=19.56 E-value=37 Score=33.22 Aligned_cols=18 Identities=50% Similarity=0.911 Sum_probs=14.8
Q ss_pred ccccccccchhhhcccCC
Q 047949 327 EQVDGQFNSWRDFQNKYS 344 (388)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~ 344 (388)
|--||..+|||+||.+-.
T Consensus 211 EsRd~Rv~sWrnFq~~t~ 228 (250)
T KOG1150|consen 211 ESRDGRVGSWRNFQAKTK 228 (250)
T ss_pred HhcccccchHHHHHHhhh
Confidence 556899999999998753
No 5
>cd07557 trimeric_dUTPase Trimeric dUTP diphosphatases. Trimeric dUTP diphosphatases, or dUTPases, are the most common family of dUTPase, found in bacteria, eukaryotes, and archaea. They catalyze the hydrolysis of the dUTP-Mg complex (dUTP-Mg) into dUMP and pyrophosphate. This reaction is crucial for the preservation of chromosomal integrity as it removes dUTP and therefore reduces the cellular dUTP/dTTP ratio, and prevents dUTP from being incorporated into DNA. It also provides dUMP as the precursor for dTTP synthesis via the thymidylate synthase pathway. dUTPases are homotrimeric, except some monomeric viral dUTPases, which have been shown to mimic a trimer. Active sites are located at the subunit interface.
Probab=19.13 E-value=59 Score=25.96 Aligned_cols=24 Identities=38% Similarity=0.776 Sum_probs=19.8
Q ss_pred cccCCCceEeec-ceeecccccccc
Q 047949 357 SSKSDNGVYVED-GVVESGYLGHLD 380 (388)
Q Consensus 357 ~~~~~~~~~~~~-~~~~~~~~~~~~ 380 (388)
||-.-.|+.|.. |++++||-|++-
T Consensus 44 Ss~~~~Gi~v~~~g~iD~gy~G~l~ 68 (92)
T cd07557 44 SSLARKGITVHNAGVIDPGYRGEIT 68 (92)
T ss_pred chhhcCCEEecCCcccCCCCcceEE
Confidence 444458999999 999999999864
No 6
>PF08260 Kinin: Insect kinin peptide; InterPro: IPR013202 This entry represents neuropeptides that are the first members of the insect kinin-family isolated from the American cockroach. Their occurrence in the retrocerebral complex suggests a physiological role as a neurohormone. The C-terminal sequence Phe-X-Ser-Trp-Gly-NH2 characterised the peptides as members of the insect kinin family. Data suggest a possible involvement of insect kinins in water-balance by regulating the osmoregulation. Insect kinins also mediate visceral muscle contractile activity (myotropic activity) []. These peptides have lengths ranging from 6 to 14 amino acids [].
Probab=17.90 E-value=51 Score=16.58 Aligned_cols=6 Identities=67% Similarity=1.409 Sum_probs=4.2
Q ss_pred ccccch
Q 047949 331 GQFNSW 336 (388)
Q Consensus 331 ~~~~~~ 336 (388)
-.||||
T Consensus 2 pafnsw 7 (8)
T PF08260_consen 2 PAFNSW 7 (8)
T ss_pred cccccc
Confidence 357888
No 7
>PF14382 ECR1_N: Exosome complex exonuclease RRP4 N-terminal region; PDB: 2NN6_I 3M7N_C 2BA1_A 3M85_C.
Probab=17.69 E-value=92 Score=22.33 Aligned_cols=22 Identities=27% Similarity=0.543 Sum_probs=18.3
Q ss_pred cCCCceEeecceeecccccccc
Q 047949 359 KSDNGVYVEDGVVESGYLGHLD 380 (388)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~ 380 (388)
....|.|++||.+-|...|.+.
T Consensus 15 ~~G~GTY~~~g~I~asv~G~v~ 36 (39)
T PF14382_consen 15 MPGHGTYVRDGNIYASVAGTVK 36 (39)
T ss_dssp EESTTEEEETTEEEESSSEEEE
T ss_pred ecCCCEEEeCCEEEEEeeEEEE
Confidence 3578999999999998888653
No 8
>PHA03123 dUTPase; Provisional
Probab=16.21 E-value=94 Score=32.88 Aligned_cols=19 Identities=32% Similarity=0.828 Sum_probs=16.1
Q ss_pred eEeecceeecccccccchh
Q 047949 364 VYVEDGVVESGYLGHLDAQ 382 (388)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~ 382 (388)
+.|.+|||.|||-|-+-|-
T Consensus 118 ~~iAnGviDsGYRG~i~av 136 (402)
T PHA03123 118 FFIANGVIDAGYRGRICAL 136 (402)
T ss_pred eEEEeeeeccCccceEEEE
Confidence 5678999999999988663
No 9
>PLN03109 ETHYLENE-INSENSITIVE3-like3 protein; Provisional
Probab=13.49 E-value=7.4e+02 Score=27.59 Aligned_cols=48 Identities=19% Similarity=0.070 Sum_probs=25.0
Q ss_pred cccccCCCCcccccCCCcccchhhHHHHHhhhhcccCCCCCCccccccccccccC
Q 047949 245 EVQARDHSISHSRNRVSENIVENSVEAEARQLLEFNPQGGGYTGLNDASFSALQS 299 (388)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (388)
.+.-..+.++.+.+.-++--..|+ .-.|+.....|-.+-+.-=++++-
T Consensus 465 ~~yvg~~Pl~y~~~qnselh~g~~-------f~~fyn~s~~y~~~~d~Q~~~l~m 512 (599)
T PLN03109 465 SIYVGGRPLLYPNNDNSELHSGNS-------YPGFYNPSSVYQHNPDKQPLPLSI 512 (599)
T ss_pred cceeCCCCccCCCCCCcccccCCc-------ccCcCCcccccCCCCcCCcccccc
Confidence 444344445555554433323333 226777777777766665555543
No 10
>PHA03126 dUTPase; Provisional
Probab=13.08 E-value=1.2e+02 Score=31.29 Aligned_cols=35 Identities=34% Similarity=0.548 Sum_probs=24.3
Q ss_pred CCCCCCcCcccccCCCceEeecceeecccccccchh
Q 047949 347 ETGQTTPDFFSSKSDNGVYVEDGVVESGYLGHLDAQ 382 (388)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (388)
|.||..+--|-.+++| +|+..|+|.+||-|-+-|-
T Consensus 84 ~~~~~~~v~~~~~~~~-~~~~~GlID~GYrG~lk~i 118 (326)
T PHA03126 84 EPGNFSNVTFPGNSAK-YYTAYGIVDSGYRGVVKAV 118 (326)
T ss_pred cccccccccccccccc-ceeeeceECCCcceEEEeE
Confidence 3444444434445544 7899999999999998764
Done!