Query 047949
Match_columns 388
No_of_seqs 181 out of 891
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 08:00:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047949.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047949hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ulx_A Stress-induced transcri 100.0 1E-54 3.5E-59 395.1 13.3 148 1-153 13-171 (174)
2 1ut7_A No apical meristem prot 100.0 3.1E-54 1.1E-58 390.7 12.0 148 1-153 15-168 (171)
3 1ldd_A APC2WHB, anaphase promo 32.0 23 0.00078 27.8 2.1 28 3-30 36-64 (74)
4 3dct_B Nuclear receptor coacti 9.6 1.2E+02 0.0041 18.5 1.2 13 11-23 3-15 (21)
5 1flc_A Haemagglutinin-esterase 9.1 1.4E+02 0.0047 30.2 2.1 78 238-329 305-391 (432)
6 1cmb_A Met APO-repressor; DNA- 7.3 3.5E+02 0.012 22.1 3.5 38 10-51 50-88 (104)
7 3g1g_A GAG polyprotein, capsid 7.2 2.2E+02 0.0077 23.0 2.2 21 10-30 62-82 (87)
8 2ol1_A Deoxyuridine 5'-triphos 7.1 1.4E+02 0.0047 25.7 1.0 25 357-381 70-94 (147)
9 1f7d_A POL polyprotein; eight 7.1 1.4E+02 0.0047 25.2 1.0 21 361-381 60-80 (136)
10 2jv2_A Putative uncharacterize 6.8 1.9E+02 0.0065 22.7 1.6 28 13-40 26-53 (83)
No 1
>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1
Probab=100.00 E-value=1e-54 Score=395.08 Aligned_cols=148 Identities=36% Similarity=0.712 Sum_probs=132.1
Q ss_pred CCCCCCceecCCHHHHHH-HHHHhHcCCCCCcccEEeccCCCCCCCCCCCCCcccCCCceEEEeecccccccCCCccccC
Q 047949 1 MNSLVGFRFYPTDEEIIC-LLKMKRLDPGFSVRTIKEIDFYGFEPWELPCHSEIQSEEEVWYFFCEPDYKYAKSKRVNRG 79 (388)
Q Consensus 1 m~LPpGFRF~PTDEELV~-YL~~Ki~G~plp~~~I~evDVY~~ePWdLP~~s~~~g~d~eWYFFspr~rKy~nG~R~nRa 79 (388)
+.|||||||||||||||. ||++|+.|.+++.++|+++|||++|||+||+.+..+ +.+|||||++++||++|.|++|+
T Consensus 13 ~~LPpGfRF~PTDeELV~~YL~~K~~g~~~~~~~I~evDvy~~~Pw~Lp~~~~~g--~~ewYFFs~r~~ky~~g~R~nR~ 90 (174)
T 3ulx_A 13 LNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFG--AREWYFFTPRDRKYPNGSRPNRA 90 (174)
T ss_dssp TTCCTTCCCCCCHHHHHHHTHHHHHHTCCCSSSCCEECCGGGSCGGGSGGGCSSC--SSEEEEEEECCC-----CCSCEE
T ss_pred cCCCCcceeCCCHHHHHHHHHHHHhcCCCCCcCeeeecccccCCchhhhhhhccC--CceEEEEeccccccCCCCCceee
Confidence 479999999999999999 999999999999999999999999999999988765 78999999999999999999999
Q ss_pred CCCceEEecCCCceEEeCCCceEEEEEEEEEEEeecCCCCCCCcCeEEEEEEeCCCCC----------CCCCeEEEEEEE
Q 047949 80 TKEGTWKKTGNGSKIKRKYSTEVIGTKRILSFSRHDSASKKAKTEWVMHEIAVEDDPV----------YKKDFVVCRLER 149 (388)
Q Consensus 80 Tg~GyWKatGkdk~I~~~~~g~vIG~KKTLvFY~~Grap~G~KT~WvMhEYrL~~~~~----------~~~d~VLCRIfk 149 (388)
|++||||+||++++|... +.+||+||||+||. |++|++.||+|+||||+|..... ..++|||||||+
T Consensus 91 t~~G~WkatG~dk~I~~~--g~~vG~KktLvFy~-g~~p~g~kT~WvMhEY~L~~~~~~~~~~~~~~~~~~~wVlCrvf~ 167 (174)
T 3ulx_A 91 AGNGYWKATGADKPVAPR--GRTLGIKKALVFYA-GKAPRGVKTDWIMHEYRLADAGRAAAGAKKGSLRLDDWVLCRLYN 167 (174)
T ss_dssp ETTEEEEECSCCEEECCS--SSCCEEEEEEEEEE-SSTTSCEEEEEEEEEEEECSCC-----------CCSSEEEEEEEE
T ss_pred cCCceEccCCCCcEEeeC--CcEEEEEEEEEEec-CCCCCCCcCCeEEEEEEeCCCCCcccccccCCCCCCCEEEEEEEE
Confidence 999999999999999876 38999999999999 99999999999999999998643 157999999999
Q ss_pred eCCC
Q 047949 150 KRDQ 153 (388)
Q Consensus 150 K~~~ 153 (388)
|+..
T Consensus 168 K~~~ 171 (174)
T 3ulx_A 168 KKNE 171 (174)
T ss_dssp SCC-
T ss_pred cCCC
Confidence 8753
No 2
>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A
Probab=100.00 E-value=3.1e-54 Score=390.71 Aligned_cols=148 Identities=39% Similarity=0.714 Sum_probs=129.4
Q ss_pred CCCCCCceecCCHHHHHH-HHHHhHcCCCCCcccEEeccCCCCCCCCCCCCCcccCCCceEEEeecccccccCCCccccC
Q 047949 1 MNSLVGFRFYPTDEEIIC-LLKMKRLDPGFSVRTIKEIDFYGFEPWELPCHSEIQSEEEVWYFFCEPDYKYAKSKRVNRG 79 (388)
Q Consensus 1 m~LPpGFRF~PTDEELV~-YL~~Ki~G~plp~~~I~evDVY~~ePWdLP~~s~~~g~d~eWYFFspr~rKy~nG~R~nRa 79 (388)
+.|||||||||||||||. ||++|+.|.+++.++|+++|||++|||+||+.+..+ +.+|||||++++||++|.|++|+
T Consensus 15 ~~lPpGfRF~PTDeELv~~YL~~K~~g~~~~~~~I~e~Diy~~~Pw~Lp~~~~~g--~~ewyFFs~r~~k~~~g~R~~R~ 92 (171)
T 1ut7_A 15 LSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFG--EKEWYFFSPRDRKYPNGSRPNRV 92 (171)
T ss_dssp SCCCTTEEECCCHHHHHHHTHHHHHTTCCCSSCCSEECCGGGSCGGGHHHHSSSC--SSEEEEEEECCC-------CCEE
T ss_pred cCCCCcceeCCChHHHHHHHHHHHhcCCCCCCCeEeecccccCChhHhhchhhcC--CccEEEEeccccccCCCCccccc
Confidence 479999999999999999 999999999999999999999999999999987655 78999999999999999999999
Q ss_pred CCCceEEecCCCceEEeCCCceEEEEEEEEEEEeecCCCCCCCcCeEEEEEEeCCCCC-----CCCCeEEEEEEEeCCC
Q 047949 80 TKEGTWKKTGNGSKIKRKYSTEVIGTKRILSFSRHDSASKKAKTEWVMHEIAVEDDPV-----YKKDFVVCRLERKRDQ 153 (388)
Q Consensus 80 Tg~GyWKatGkdk~I~~~~~g~vIG~KKTLvFY~~Grap~G~KT~WvMhEYrL~~~~~-----~~~d~VLCRIfkK~~~ 153 (388)
|++||||+||++++|...+ .+||+||+|+||. |++|++.||+|+||||+|..... ..++|||||||+|+..
T Consensus 93 t~~G~Wk~tG~~k~I~~~~--~~vG~KktLvFy~-g~~p~g~kT~WvMhEY~l~~~~~~~~~~~~~~~VlCrv~~k~~~ 168 (171)
T 1ut7_A 93 AGSGYWKATGTDKIISTEG--QRVGIKKALVFYI-GKAPKGTKTNWIMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQSS 168 (171)
T ss_dssp ETTEEEEEEEEEEEEEETT--EEEEEEEEEEEEE-SSTTSCEEEEEEEEEEEECCCC--------CCEEEEEEEECC--
T ss_pred CCCCEEeccCCCceEEecC--cEEEEEEEEEEEc-CcCCCCCcCCeEEEEEEcCCCccccCcccCCCEEEEEEEEcCCC
Confidence 9999999999999999865 8999999999999 99999999999999999998752 2689999999999864
No 3
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=32.02 E-value=23 Score=27.82 Aligned_cols=28 Identities=7% Similarity=0.005 Sum_probs=24.2
Q ss_pred CCCCceecC-CHHHHHHHHHHhHcCCCCC
Q 047949 3 SLVGFRFYP-TDEEIICLLKMKRLDPGFS 30 (388)
Q Consensus 3 LPpGFRF~P-TDEELV~YL~~Ki~G~plp 30 (388)
.|.|+.|.. |++||-.||-.|+....+.
T Consensus 36 ~~~~~~~~~it~~eL~~fL~~~v~e~kL~ 64 (74)
T 1ldd_A 36 VPKDWGYNRITLQQLEGYLNTLADEGRLK 64 (74)
T ss_dssp SCGGGCCTTCCHHHHHHHHHHHHHTTSEE
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHhCCeEE
Confidence 477899998 9999999999999987654
No 4
>3dct_B Nuclear receptor coactivator 1; FXR, GW4064, alpha-helical sandwich, alternative splicing, DNA-binding, metal-binding nucleus, repressor; HET: 064; 2.50A {Homo sapiens} PDB: 3dcu_B* 3hc5_B* 3hc6_B* 3rvf_B*
Probab=9.59 E-value=1.2e+02 Score=18.46 Aligned_cols=13 Identities=23% Similarity=0.330 Sum_probs=10.3
Q ss_pred CCHHHHHHHHHHh
Q 047949 11 PTDEEIICLLKMK 23 (388)
Q Consensus 11 PTDEELV~YL~~K 23 (388)
+.|.+|+.||.-|
T Consensus 3 ~kdhqllrylldk 15 (21)
T 3dct_B 3 SKDHQLLRYLLDK 15 (26)
T ss_pred hhHHHHHHHHHcc
Confidence 6788999988765
No 5
>1flc_A Haemagglutinin-esterase-fusion glycoprotein; receptor binding, membrane fusion, influenz hydrolase; HET: NDG NAG BMA MAN; 3.20A {Influenza c virus} SCOP: b.19.1.3 c.23.10.2
Probab=9.07 E-value=1.4e+02 Score=30.18 Aligned_cols=78 Identities=19% Similarity=0.133 Sum_probs=53.5
Q ss_pred ccccccccccccCCCCcccccCCCcccchhhHHHHHhhhhc---ccCCCCCCccc------cccccccccCCCCCCcCCc
Q 047949 238 ENGVLVSEVQARDHSISHSRNRVSENIVENSVEAEARQLLE---FNPQGGGYTGL------NDASFSALQSPVYPEQESS 308 (388)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~ 308 (388)
||--.++.|+ .|+ |.+++-+.+ .+..|||..- |..-...|+|. |+++=+-||--.| +++
T Consensus 305 ~k~~vPVQaV---qSi-W~~~R~SD~-----ai~~ACq~~PyC~f~Nkt~~Y~G~~D~nHGD~e~r~mlsGLLy---Nss 372 (432)
T 1flc_A 305 MKEKGPVTAV---QSI-WGKGRESDY-----AVDQACLSTPGCMLIQKQKPYIGEADDHHGDQEMRELLSGLDY---EAR 372 (432)
T ss_dssp CCCCCCEEEE---CCC-CCTTSCCCC-----HHHHHHHTSTTEEEECCSSCCCCSSBTTBCCHHHHHHGGGGGS---BCS
T ss_pred cccccccEEe---eeh-hcccccchh-----HHHHHhccCCeEEEecCCCCcccccccccccHHHHHHHHHhhh---cCc
Confidence 6655555544 676 999999999 8899999333 45555667762 3344455666565 788
Q ss_pred ccCCCCccCCCcccccccccc
Q 047949 309 CSNGSSYGSGLLNSQFDSEQV 329 (388)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~ 329 (388)
|- |.+|+-.+++-|.++-.
T Consensus 373 Ci--S~qG~~~~~~~~Ss~~~ 391 (432)
T 1flc_A 373 CI--SQSGWVNETSPFTEKYL 391 (432)
T ss_dssp EE--ETTEEECSCCSEESSCC
T ss_pred cc--cccCceecccccccccc
Confidence 85 67888888887777644
No 6
>1cmb_A Met APO-repressor; DNA-binding regulatory protein; 1.80A {Escherichia coli} SCOP: a.43.1.5 PDB: 1cma_A 1cmc_A* 1mjl_A* 1mj2_A 1mjk_A* 1mjm_A 1mjo_A* 1mjp_A 1mjq_A*
Probab=7.32 E-value=3.5e+02 Score=22.15 Aligned_cols=38 Identities=16% Similarity=0.201 Sum_probs=30.0
Q ss_pred cCCHHHHHH-HHHHhHcCCCCCcccEEeccCCCCCCCCCCCCC
Q 047949 10 YPTDEEIIC-LLKMKRLDPGFSVRTIKEIDFYGFEPWELPCHS 51 (388)
Q Consensus 10 ~PTDEELV~-YL~~Ki~G~plp~~~I~evDVY~~ePWdLP~~s 51 (388)
|-|-.||++ -...-..|+|+|. +.|+-+..|-++|..+
T Consensus 50 HATNSELLCEAFLHA~TGQPLP~----D~Dl~Kd~~d~iP~~a 88 (104)
T 1cmb_A 50 HATNSELLCEAFLHAFTGQPLPD----DADLRKERSDEIPEAA 88 (104)
T ss_dssp CCSHHHHHHHHHHHHHHCCCCCC----GGGGBTTSCSCSCHHH
T ss_pred hcccHHHHHHHHHHHhcCCCCCC----chhhhhcCCccchHHH
Confidence 668899999 4445678999985 4688899999998754
No 7
>3g1g_A GAG polyprotein, capsid protein; alpha-helical bundle, virion, viral protein, retrovirus; 2.01A {Rous sarcoma virus}
Probab=7.20 E-value=2.2e+02 Score=23.01 Aligned_cols=21 Identities=19% Similarity=0.175 Sum_probs=13.2
Q ss_pred cCCHHHHHHHHHHhHcCCCCC
Q 047949 10 YPTDEEIICLLKMKRLDPGFS 30 (388)
Q Consensus 10 ~PTDEELV~YL~~Ki~G~plp 30 (388)
-|+.+|||.|+..|..-.++.
T Consensus 62 ~~~~~e~Ik~~l~~~~~~~~~ 82 (87)
T 3g1g_A 62 LTTPGEIIKYVLDRQKTAPLT 82 (87)
T ss_dssp CCSHHHHHHHHHHHHC-----
T ss_pred CCChHHHHHHHHHHhhcCCcc
Confidence 477899999888877666654
No 8
>2ol1_A Deoxyuridine 5'-triphosphate nucleotidohydrolase; fold, jelly-roll, superfamily, dutpase-like; HET: UMP; 1.80A {Vaccinia virus} PDB: 2oke_A* 2okd_A* 2ol0_A* 2okb_A
Probab=7.09 E-value=1.4e+02 Score=25.67 Aligned_cols=25 Identities=28% Similarity=0.551 Sum_probs=19.7
Q ss_pred cccCCCceEeecceeecccccccch
Q 047949 357 SSKSDNGVYVEDGVVESGYLGHLDA 381 (388)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (388)
|+-.-.|+.|.-|++.+||-|++..
T Consensus 70 Ssla~kGi~v~~GvID~dYrGei~v 94 (147)
T 2ol1_A 70 SGLSLKGIDIGGGVIDEDYRGNIGV 94 (147)
T ss_dssp HHHHTTTEEEECCEECTTCCSCCEE
T ss_pred CchhhCCeEECcEEeCCCCCCeeEE
Confidence 3444459999999999999999753
No 9
>1f7d_A POL polyprotein; eight stranded beta-barrel, viral protein, hydrolase; 1.40A {Feline immunodeficiency virus} SCOP: b.85.4.1 PDB: 1f7k_A* 1f7n_A* 1f7o_A 1f7p_A* 1f7q_A* 1f7r_A* 1dut_A
Probab=7.06 E-value=1.4e+02 Score=25.22 Aligned_cols=21 Identities=33% Similarity=0.727 Sum_probs=18.1
Q ss_pred CCceEeecceeecccccccch
Q 047949 361 DNGVYVEDGVVESGYLGHLDA 381 (388)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~ 381 (388)
-.|+.|.-|++.+||-|++..
T Consensus 60 ~kGi~v~~GvID~gYrGei~v 80 (136)
T 1f7d_A 60 SKGLDVLGGVIDEGYRGEIGV 80 (136)
T ss_dssp TTTEEEECCEECTTCCSCCEE
T ss_pred cCCEEecCceECCCCCceEEE
Confidence 358999999999999998754
No 10
>2jv2_A Putative uncharacterized protein PH1500; AAA ATPase NC-domain-like, unknown function; NMR {Pyrococcus horikoshii}
Probab=6.83 E-value=1.9e+02 Score=22.74 Aligned_cols=28 Identities=7% Similarity=0.176 Sum_probs=19.3
Q ss_pred HHHHHHHHHHhHcCCCCCcccEEeccCC
Q 047949 13 DEEIICLLKMKRLDPGFSVRTIKEIDFY 40 (388)
Q Consensus 13 DEELV~YL~~Ki~G~plp~~~I~evDVY 40 (388)
+.++..||++++.|+|+...-+..++++
T Consensus 26 ~~~~~~~lk~~L~grPV~~GD~I~i~~~ 53 (83)
T 2jv2_A 26 PPDFVDVIRIKLQGKTVRTGDVIGISIL 53 (83)
T ss_dssp CHHHHHHHHHHHTTSEECTTCEEEEEET
T ss_pred CccHHHHHHHHHCCCCccCCCEEEEeeC
Confidence 3555559999999999875433336654
Done!