Query 047950
Match_columns 317
No_of_seqs 208 out of 1097
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 08:01:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047950.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047950hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gcc_A Ethylene responsive ele 99.9 3E-23 1E-27 156.1 6.4 60 156-215 2-62 (63)
2 3igm_B PF14_0633 protein; AP2 75.6 2.4 8.3E-05 33.0 3.5 26 153-180 4-30 (77)
3 1u3e_M HNH homing endonuclease 75.3 0.61 2.1E-05 39.8 0.1 38 157-197 109-146 (174)
4 1gcc_A Ethylene responsive ele 74.3 0.64 2.2E-05 34.2 0.0 28 275-303 6-34 (63)
5 1z1b_A Integrase; protein-DNA 59.0 7.6 0.00026 34.5 3.9 41 159-203 15-55 (356)
6 3jtz_A Integrase; four strande 49.1 33 0.0011 26.3 5.6 44 160-203 28-75 (88)
7 1x60_A Sporulation-specific N- 31.9 26 0.00089 25.4 2.4 24 178-201 45-68 (79)
8 3ju0_A Phage integrase; four s 31.8 73 0.0025 25.4 5.2 44 160-203 28-75 (108)
9 1uta_A FTSN, MSGA, cell divisi 28.4 49 0.0017 24.2 3.4 32 170-201 37-68 (81)
10 2ftc_I Mitochondrial ribosomal 26.9 70 0.0024 26.1 4.3 37 167-205 79-115 (118)
No 1
>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A
Probab=99.88 E-value=3e-23 Score=156.09 Aligned_cols=60 Identities=62% Similarity=1.058 Sum_probs=56.7
Q ss_pred ceeeEEeCCCCcEEEEEeeCCC-CeeecccCCCCHHHHHHHHHHHHHHhcCCCCcCCCCCC
Q 047950 156 NYRGVRKRPWGRWSAEIRDRIG-RCRHWLGTFDTAEEAARAYDAAARRLRGSKARTNFEIP 215 (317)
Q Consensus 156 ~yRGVr~r~~GKW~A~Ir~~~~-~kri~LGtFdT~EEAArAYD~AA~~~~G~~A~~NFp~s 215 (317)
+||||++++||||+|+|+++.. ++++|||+|+|+||||+|||.|+++++|.++.+|||.+
T Consensus 2 ~yrGV~~r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~ 62 (63)
T 1gcc_A 2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR 62 (63)
T ss_dssp CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred CcccEeeCCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCc
Confidence 6999999899999999999864 79999999999999999999999999999999999974
No 2
>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}
Probab=75.59 E-value=2.4 Score=32.95 Aligned_cols=26 Identities=31% Similarity=0.470 Sum_probs=20.7
Q ss_pred CCCceeeEEeC-CCCcEEEEEeeCCCCee
Q 047950 153 VQKNYRGVRKR-PWGRWSAEIRDRIGRCR 180 (317)
Q Consensus 153 ~tS~yRGVr~r-~~GKW~A~Ir~~~~~kr 180 (317)
.+|+|.||++. +.+.|.|.-.+ +|++
T Consensus 4 ~~Sg~pGVsw~kR~~~WlA~W~e--~g~r 30 (77)
T 3igm_B 4 MSSGYPGVSWNKRMCAWLAFFYD--GASR 30 (77)
T ss_dssp CCSSSTTEEEETTTTEEEEEEEE--TTEE
T ss_pred CCCCCCcEEeecCCceEEEEEec--CCeE
Confidence 47999999765 57999999987 5544
No 3
>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1
Probab=75.32 E-value=0.61 Score=39.81 Aligned_cols=38 Identities=5% Similarity=-0.115 Sum_probs=29.0
Q ss_pred eeeEEeCCCCcEEEEEeeCCCCeeecccCCCCHHHHHHHHH
Q 047950 157 YRGVRKRPWGRWSAEIRDRIGRCRHWLGTFDTAEEAARAYD 197 (317)
Q Consensus 157 yRGVr~r~~GKW~A~Ir~~~~~kri~LGtFdT~EEAArAYD 197 (317)
.+||.+...++|.+.|.. + +.++||.|++.+|||++|.
T Consensus 109 ~~g~~~~~~~k~~~vi~~--~-~~~~~~~f~s~~eAa~~~G 146 (174)
T 1u3e_M 109 SKAQQIAKIKNQKPIIVI--S-PDGIEKEYPSTKCACEELG 146 (174)
T ss_dssp HHHHHHHHHHTCCCEEEE--C-TTSCEEEESCHHHHHHHHT
T ss_pred eeeeeeccCCCCceEEEE--c-CCceEEeeCCHHHHHHHHC
Confidence 356644334568999977 4 5678999999999999964
No 4
>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A
Probab=74.31 E-value=0.64 Score=34.24 Aligned_cols=28 Identities=11% Similarity=0.048 Sum_probs=21.9
Q ss_pred ccchhhhhhhhhccccccc-cceeeccccc
Q 047950 275 FDHHQAKRNAKAKDTNTLE-LDLKLGVGLA 303 (317)
Q Consensus 275 ~~hHq~~~~~~~~~~~~~~-~dl~lg~~~~ 303 (317)
|+.|+.|+|+|.|.....+ +.++||| +.
T Consensus 6 V~~r~~gkw~A~I~~~~~~g~r~~LGt-f~ 34 (63)
T 1gcc_A 6 VRQRPWGKFAAEIRDPAKNGARVWLGT-FE 34 (63)
T ss_dssp EEEETTTEEEEEEEETTTTSEEEEEEE-ES
T ss_pred EeeCCCCcEEEEEccccCCCeEEEeee-CC
Confidence 4456789999999976654 7999998 53
No 5
>1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 3.80A {Enterobacteria phage lambda} SCOP: d.10.1.4 d.163.1.1 PDB: 1z1g_A 1kjk_A 2wcc_3*
Probab=58.96 E-value=7.6 Score=34.55 Aligned_cols=41 Identities=17% Similarity=-0.023 Sum_probs=30.8
Q ss_pred eEEeCCCCcEEEEEeeCCCCeeecccCCCCHHHHHHHHHHHHHHh
Q 047950 159 GVRKRPWGRWSAEIRDRIGRCRHWLGTFDTAEEAARAYDAAARRL 203 (317)
Q Consensus 159 GVr~r~~GKW~A~Ir~~~~~kri~LGtFdT~EEAArAYD~AA~~~ 203 (317)
||+.++.|.|..+.. .+|+++.+|. |..||..+...+...+
T Consensus 15 ~v~~~~~g~~~~r~~--~~gk~~~~g~--t~~eA~~~a~~~~~~~ 55 (356)
T 1z1b_A 15 NLYIRNNGYYCYRDP--RTGKEFGLGR--DRRIAITEAIQANIEL 55 (356)
T ss_dssp TEEEETTTEEEEECT--TTCCEEEEES--CHHHHHHHHHHHHHHH
T ss_pred cceecCCCeEEEEee--cCCeEEECCC--CHHHHHHHHHHHHHHH
Confidence 687778889987764 4788899996 8888877766655444
No 6
>3jtz_A Integrase; four stranded beta-sheet, DNA binding protein; 1.30A {Yersinia pestis} PDB: 3rmp_A
Probab=49.11 E-value=33 Score=26.34 Aligned_cols=44 Identities=20% Similarity=0.338 Sum_probs=30.6
Q ss_pred EEeCCCC--cEEEEEeeCCCCeeecccCCC--CHHHHHHHHHHHHHHh
Q 047950 160 VRKRPWG--RWSAEIRDRIGRCRHWLGTFD--TAEEAARAYDAAARRL 203 (317)
Q Consensus 160 Vr~r~~G--KW~A~Ir~~~~~kri~LGtFd--T~EEAArAYD~AA~~~ 203 (317)
++-.+.| .|.-+.+.....+++-||.|. |.+||...-+++...+
T Consensus 28 L~V~psG~K~w~~ryr~~Gk~~~~~LG~yp~~sL~~AR~~a~~~r~~l 75 (88)
T 3jtz_A 28 LLVKPGGSRHWYLKYRISGKESRIALGAYPAISLSDARQQREGIRKML 75 (88)
T ss_dssp EEECTTSCEEEEEEEEETTEEEEEEEEETTTSCHHHHHHHHHHHHHHH
T ss_pred EEEecCCCEEEEEEEEeCCeEEEEEeECCCCCCHHHHHHHHHHHHHHH
Confidence 3444554 498888774444678899996 5888887777766555
No 7
>1x60_A Sporulation-specific N-acetylmuramoyl-L-alanine amidase; CWLC, CWLCR, peptidoglycan, cell WALL lytic amidase, tandem repeats, hydrolase; NMR {Bacillus subtilis}
Probab=31.90 E-value=26 Score=25.37 Aligned_cols=24 Identities=17% Similarity=0.243 Sum_probs=19.3
Q ss_pred CeeecccCCCCHHHHHHHHHHHHH
Q 047950 178 RCRHWLGTFDTAEEAARAYDAAAR 201 (317)
Q Consensus 178 ~kri~LGtFdT~EEAArAYD~AA~ 201 (317)
--++++|-|.+.++|..+.++...
T Consensus 45 ~yRV~vGpf~~~~~A~~~~~~L~~ 68 (79)
T 1x60_A 45 LYKVQIGAFSSKDNADTLAARAKN 68 (79)
T ss_dssp EEEEEEEEESSHHHHHHHHHHHHH
T ss_pred EEEEEECCcCCHHHHHHHHHHHHH
Confidence 367889999999999988765444
No 8
>3ju0_A Phage integrase; four stranded beta-sheet, DNA binding protein; 1.60A {Pectobacterium atrosepticum}
Probab=31.76 E-value=73 Score=25.37 Aligned_cols=44 Identities=23% Similarity=0.295 Sum_probs=29.8
Q ss_pred EEeCCCC--cEEEEEeeCCCCeeecccCCC--CHHHHHHHHHHHHHHh
Q 047950 160 VRKRPWG--RWSAEIRDRIGRCRHWLGTFD--TAEEAARAYDAAARRL 203 (317)
Q Consensus 160 Vr~r~~G--KW~A~Ir~~~~~kri~LGtFd--T~EEAArAYD~AA~~~ 203 (317)
++-.+.| .|.-+.+.....+++-||.|. |..+|...-+.+...+
T Consensus 28 L~V~psG~K~w~~rYr~~GK~~~~~LG~yp~~SLa~AR~~a~~~r~~l 75 (108)
T 3ju0_A 28 LLVHPNGSKYWRLSYRFEKKQRLLALGVYPAVSLADARQRRDEAKKLL 75 (108)
T ss_dssp EEECTTSCEEEEEEEEETTEEEEEEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred EEEEcCCCEEEEEEEEEcCceEEEecCCCCCCCHHHHHHHHHHHHHHH
Confidence 3444554 398888763344668899996 5888877776665555
No 9
>1uta_A FTSN, MSGA, cell division protein FTSN; bacterial cell division protein, RNP domain, transmembrane, inner membrane, repeat; NMR {Escherichia coli} SCOP: d.58.52.1
Probab=28.45 E-value=49 Score=24.20 Aligned_cols=32 Identities=19% Similarity=0.219 Sum_probs=22.2
Q ss_pred EEEeeCCCCeeecccCCCCHHHHHHHHHHHHH
Q 047950 170 AEIRDRIGRCRHWLGTFDTAEEAARAYDAAAR 201 (317)
Q Consensus 170 A~Ir~~~~~kri~LGtFdT~EEAArAYD~AA~ 201 (317)
+.|.....--+|++|-|.+.++|..+.++...
T Consensus 37 a~i~~~~~~yRV~vGpf~s~~~A~~~~~~L~~ 68 (81)
T 1uta_A 37 SKITTNNGWNRVVIGPVKGKENADSTLNRLKM 68 (81)
T ss_dssp EEEEECSSSEEEEESSCBTTTHHHHHHHHHHH
T ss_pred eEEEeCCcEEEEEECCcCCHHHHHHHHHHHHH
Confidence 44433223468899999999999988765444
No 10
>2ftc_I Mitochondrial ribosomal protein L16, 39S ribosomal protein L13, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_I
Probab=26.92 E-value=70 Score=26.10 Aligned_cols=37 Identities=22% Similarity=0.203 Sum_probs=30.3
Q ss_pred cEEEEEeeCCCCeeecccCCCCHHHHHHHHHHHHHHhcC
Q 047950 167 RWSAEIRDRIGRCRHWLGTFDTAEEAARAYDAAARRLRG 205 (317)
Q Consensus 167 KW~A~Ir~~~~~kri~LGtFdT~EEAArAYD~AA~~~~G 205 (317)
-|+|.|.. +..-+-++...+++.|..|...|+.+|=+
T Consensus 79 ~wva~Vk~--G~ilfEi~g~~~~~~a~eAlr~a~~KlP~ 115 (118)
T 2ftc_I 79 HYVTPVKA--GRLVVEMGGRCEFEEVQGFLDQVAHKLPF 115 (118)
T ss_pred EEEEEECC--CCEEEEEeccCCHHHHHHHHHHHHhhCCC
Confidence 39999966 77777777778899999999999988743
Done!