BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047952
(354 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3BEH|A Chain A, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|3BEH|B Chain B, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|3BEH|C Chain C, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|3BEH|D Chain D, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|2ZD9|A Chain A, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
pdb|2ZD9|B Chain B, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
pdb|2ZD9|C Chain C, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
pdb|2ZD9|D Chain D, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
Length = 355
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 62/114 (54%), Gaps = 13/114 (11%)
Query: 83 SLSFYAVNSQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLV 142
+L+ Y + I+ K I ++++ +VT++T GYGD +P S ++L+ A + +G+G+
Sbjct: 144 ALAAYVIERDIQPEKFGSIPQAMWWAVVTLSTTGYGDTIPQSFAGRVLAGAVMMSGIGIF 203
Query: 143 GMFLS----------KAADYLVDKQEILLVKALHRYQKVGPTDILKEIETNKVR 186
G++ + D++ + Q LV A+ +QK+GP +++ + + R
Sbjct: 204 GLWAGILATGFYQEVRRGDFVRNWQ---LVAAVPLFQKLGPAVLVEIVRALRAR 254
>pdb|3OUF|A Chain A, Structure Of A K+ Selective Nak Mutant
pdb|3OUF|B Chain B, Structure Of A K+ Selective Nak Mutant
Length = 97
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 40/60 (66%), Gaps = 3/60 (5%)
Query: 91 SQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGMFLSKAA 150
S +EGL+ +D++YF +VT+TTVGYGD P + K+ + ++F G+GLV F+ K A
Sbjct: 26 STVEGLRP---IDALYFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGLVFGFIHKLA 82
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 29/47 (61%)
Query: 203 GTIFLVVVEKMSFVDAFYCVCSTITTLGYGDKSFSTTGGRAFGVVWI 249
GTIF VE + +DA Y T+TT+GYGD S T G+ F +++I
Sbjct: 21 GTIFYSTVEGLRPIDALYFSVVTLTTVGYGDFSPQTDFGKIFTILYI 67
>pdb|3T4Z|A Chain A, Crystal Structure Of Nak2k Channel Y55w Mutant
pdb|3T4Z|B Chain B, Crystal Structure Of Nak2k Channel Y55w Mutant
Length = 97
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 40/60 (66%), Gaps = 3/60 (5%)
Query: 91 SQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGMFLSKAA 150
S +EGL+ +D+++F +VT+TTVGYGD P + K+ + ++F G+GLV F+ K A
Sbjct: 26 STVEGLRP---IDALWFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGLVFGFIHKLA 82
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 29/47 (61%)
Query: 203 GTIFLVVVEKMSFVDAFYCVCSTITTLGYGDKSFSTTGGRAFGVVWI 249
GTIF VE + +DA + T+TT+GYGD S T G+ F +++I
Sbjct: 21 GTIFYSTVEGLRPIDALWFSVVTLTTVGYGDFSPQTDFGKIFTILYI 67
>pdb|3TET|A Chain A, Crystal Structure Of Nak2k Channel Y66f Mutant
pdb|3TET|B Chain B, Crystal Structure Of Nak2k Channel Y66f Mutant
Length = 97
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 40/60 (66%), Gaps = 3/60 (5%)
Query: 91 SQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGMFLSKAA 150
S +EGL+ +D++YF +VT+TTVG+GD P + K+ + ++F G+GLV F+ K A
Sbjct: 26 STVEGLRP---IDALYFSVVTLTTVGFGDFSPQTDFGKIFTILYIFIGIGLVFGFIHKLA 82
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 29/47 (61%)
Query: 203 GTIFLVVVEKMSFVDAFYCVCSTITTLGYGDKSFSTTGGRAFGVVWI 249
GTIF VE + +DA Y T+TT+G+GD S T G+ F +++I
Sbjct: 21 GTIFYSTVEGLRPIDALYFSVVTLTTVGFGDFSPQTDFGKIFTILYI 67
>pdb|3T4D|A Chain A, Crystal Structure Of Nak2k Channel Y55f Mutant
pdb|3T4D|B Chain B, Crystal Structure Of Nak2k Channel Y55f Mutant
Length = 97
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 40/60 (66%), Gaps = 3/60 (5%)
Query: 91 SQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGMFLSKAA 150
S +EGL+ +D+++F +VT+TTVGYGD P + K+ + ++F G+GLV F+ K A
Sbjct: 26 STVEGLRP---IDALFFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGLVFGFIHKLA 82
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 29/47 (61%)
Query: 203 GTIFLVVVEKMSFVDAFYCVCSTITTLGYGDKSFSTTGGRAFGVVWI 249
GTIF VE + +DA + T+TT+GYGD S T G+ F +++I
Sbjct: 21 GTIFYSTVEGLRPIDALFFSVVTLTTVGYGDFSPQTDFGKIFTILYI 67
>pdb|3TCU|A Chain A, Crystal Structure Of Nak2k Channel D68e Mutant
pdb|3TCU|B Chain B, Crystal Structure Of Nak2k Channel D68e Mutant
Length = 97
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 40/60 (66%), Gaps = 3/60 (5%)
Query: 91 SQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGMFLSKAA 150
S +EGL+ +D++YF +VT+TTVGYG+ P + K+ + ++F G+GLV F+ K A
Sbjct: 26 STVEGLRP---IDALYFSVVTLTTVGYGEFSPQTDFGKIFTILYIFIGIGLVFGFIHKLA 82
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 29/47 (61%)
Query: 203 GTIFLVVVEKMSFVDAFYCVCSTITTLGYGDKSFSTTGGRAFGVVWI 249
GTIF VE + +DA Y T+TT+GYG+ S T G+ F +++I
Sbjct: 21 GTIFYSTVEGLRPIDALYFSVVTLTTVGYGEFSPQTDFGKIFTILYI 67
>pdb|3T1C|A Chain A, Crystal Structure Of Nak Channel D66y Mutant
pdb|3T1C|B Chain B, Crystal Structure Of Nak Channel D66y Mutant
Length = 97
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 40/60 (66%), Gaps = 3/60 (5%)
Query: 91 SQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGMFLSKAA 150
S +EGL+ +D++YF +VT+TTVGYG+ P + K+ + ++F G+GLV F+ K A
Sbjct: 26 STVEGLRP---IDALYFSVVTLTTVGYGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLA 82
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 29/47 (61%)
Query: 203 GTIFLVVVEKMSFVDAFYCVCSTITTLGYGDKSFSTTGGRAFGVVWI 249
GTIF VE + +DA Y T+TT+GYG+ S T G+ F +++I
Sbjct: 21 GTIFYSTVEGLRPIDALYFSVVTLTTVGYGNFSPQTDFGKIFTILYI 67
>pdb|3T2M|A Chain A, Crystal Structure Of Nak Channel N68d Mutant
pdb|3T2M|B Chain B, Crystal Structure Of Nak Channel N68d Mutant
Length = 97
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 39/60 (65%), Gaps = 3/60 (5%)
Query: 91 SQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGMFLSKAA 150
S +EGL+ +D++YF +VT+TTVG GD P + K+ + ++F G+GLV F+ K A
Sbjct: 26 STVEGLRP---IDALYFSVVTLTTVGDGDFSPQTDFGKIFTILYIFIGIGLVFGFIHKLA 82
Score = 36.2 bits (82), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 28/47 (59%)
Query: 203 GTIFLVVVEKMSFVDAFYCVCSTITTLGYGDKSFSTTGGRAFGVVWI 249
GTIF VE + +DA Y T+TT+G GD S T G+ F +++I
Sbjct: 21 GTIFYSTVEGLRPIDALYFSVVTLTTVGDGDFSPQTDFGKIFTILYI 67
>pdb|3VOU|A Chain A, The Crystal Structure Of Nak-Navsulp Chimera Channel
pdb|3VOU|B Chain B, The Crystal Structure Of Nak-Navsulp Chimera Channel
Length = 148
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 39/60 (65%), Gaps = 3/60 (5%)
Query: 91 SQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGMFLSKAA 150
S +EGL+ LD++YF +VT+TTVG G+ P + K+ + ++F G+GLV F+ K A
Sbjct: 46 STVEGLRP---LDALYFSVVTLTTVGDGNFSPQTDFGKVFTILYIFIGIGLVFGFIHKLA 102
Score = 35.0 bits (79), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 28/47 (59%)
Query: 203 GTIFLVVVEKMSFVDAFYCVCSTITTLGYGDKSFSTTGGRAFGVVWI 249
GTIF VE + +DA Y T+TT+G G+ S T G+ F +++I
Sbjct: 41 GTIFYSTVEGLRPLDALYFSVVTLTTVGDGNFSPQTDFGKVFTILYI 87
>pdb|3E83|A Chain A, Crystal Structure Of The The Open Nak Channel Pore
pdb|3E83|B Chain B, Crystal Structure Of The The Open Nak Channel Pore
pdb|3E86|A Chain A, High Resolution Crystal Structure Of The Open Nak Channel
Pore
pdb|3E86|B Chain B, High Resolution Crystal Structure Of The Open Nak Channel
Pore
pdb|3E89|A Chain A, Crystal Structure Of The The Open Nak Channel-Low Na+
Complex
pdb|3E89|B Chain B, Crystal Structure Of The The Open Nak Channel-Low Na+
Complex
pdb|3E8B|A Chain A, Crystal Structure Of The The Open Nak Channel- Rb+ Complex
pdb|3E8B|B Chain B, Crystal Structure Of The The Open Nak Channel- Rb+ Complex
pdb|3E8F|A Chain A, Crystal Structure Of The The Open Nak Channel- K+BA2+
pdb|3E8F|B Chain B, Crystal Structure Of The The Open Nak Channel- K+BA2+
pdb|3E8G|A Chain A, Crystal Structure Of The The Open Nak Channel-Na+CA2+
COMPLEX
pdb|3E8G|B Chain B, Crystal Structure Of The The Open Nak Channel-Na+CA2+
COMPLEX
pdb|3E8H|A Chain A, Crystal Structure Of The The Open Nak Channel-K+ Complex
pdb|3E8H|B Chain B, Crystal Structure Of The The Open Nak Channel-K+ Complex
Length = 96
Score = 49.7 bits (117), Expect = 2e-06, Method: Composition-based stats.
Identities = 24/60 (40%), Positives = 39/60 (65%), Gaps = 3/60 (5%)
Query: 91 SQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGMFLSKAA 150
S +EGL+ +D++YF +VT+TTVG G+ P + K+ + ++F G+GLV F+ K A
Sbjct: 25 STVEGLRP---IDALYFSVVTLTTVGDGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLA 81
Score = 36.2 bits (82), Expect = 0.027, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 28/47 (59%)
Query: 203 GTIFLVVVEKMSFVDAFYCVCSTITTLGYGDKSFSTTGGRAFGVVWI 249
GTIF VE + +DA Y T+TT+G G+ S T G+ F +++I
Sbjct: 20 GTIFYSTVEGLRPIDALYFSVVTLTTVGDGNFSPQTDFGKIFTILYI 66
>pdb|2Q67|A Chain A, Crystal Structure Of Nak Channel D66a Mutant
pdb|2Q67|B Chain B, Crystal Structure Of Nak Channel D66a Mutant
Length = 114
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 39/60 (65%), Gaps = 3/60 (5%)
Query: 91 SQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGMFLSKAA 150
S +EGL+ +D++YF +VT+TTVG G+ P + K+ + ++F G+GLV F+ K A
Sbjct: 43 STVEGLRP---IDALYFSVVTLTTVGAGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLA 99
Score = 34.3 bits (77), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 28/47 (59%)
Query: 203 GTIFLVVVEKMSFVDAFYCVCSTITTLGYGDKSFSTTGGRAFGVVWI 249
GTIF VE + +DA Y T+TT+G G+ S T G+ F +++I
Sbjct: 38 GTIFYSTVEGLRPIDALYFSVVTLTTVGAGNFSPQTDFGKIFTILYI 84
>pdb|2Q69|A Chain A, Crystal Structure Of Nak Channel D66n Mutant
pdb|2Q69|B Chain B, Crystal Structure Of Nak Channel D66n Mutant
Length = 114
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 39/60 (65%), Gaps = 3/60 (5%)
Query: 91 SQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGMFLSKAA 150
S +EGL+ +D++YF +VT+TTVG G+ P + K+ + ++F G+GLV F+ K A
Sbjct: 43 STVEGLRP---IDALYFSVVTLTTVGNGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLA 99
Score = 34.3 bits (77), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 28/47 (59%)
Query: 203 GTIFLVVVEKMSFVDAFYCVCSTITTLGYGDKSFSTTGGRAFGVVWI 249
GTIF VE + +DA Y T+TT+G G+ S T G+ F +++I
Sbjct: 38 GTIFYSTVEGLRPIDALYFSVVTLTTVGNGNFSPQTDFGKIFTILYI 84
>pdb|2Q6A|A Chain A, Crystal Structure Of Nak Channel D66e Mutant
pdb|2Q6A|B Chain B, Crystal Structure Of Nak Channel D66e Mutant
Length = 114
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 39/60 (65%), Gaps = 3/60 (5%)
Query: 91 SQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGMFLSKAA 150
S +EGL+ +D++YF +VT+TTVG G+ P + K+ + ++F G+GLV F+ K A
Sbjct: 43 STVEGLRP---IDALYFSVVTLTTVGEGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLA 99
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 28/47 (59%)
Query: 203 GTIFLVVVEKMSFVDAFYCVCSTITTLGYGDKSFSTTGGRAFGVVWI 249
GTIF VE + +DA Y T+TT+G G+ S T G+ F +++I
Sbjct: 38 GTIFYSTVEGLRPIDALYFSVVTLTTVGEGNFSPQTDFGKIFTILYI 84
>pdb|2Q68|A Chain A, Crystal Structure Of Nak Channel D66a, S70e Double Mutants
pdb|2Q68|B Chain B, Crystal Structure Of Nak Channel D66a, S70e Double Mutants
Length = 114
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 39/60 (65%), Gaps = 3/60 (5%)
Query: 91 SQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGMFLSKAA 150
S +EGL+ +D++YF +VT+TTVG G+ P + K+ + ++F G+GLV F+ K A
Sbjct: 43 STVEGLRP---IDALYFSVVTLTTVGAGNFEPQTDFGKIFTILYIFIGIGLVFGFIHKLA 99
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 27/47 (57%)
Query: 203 GTIFLVVVEKMSFVDAFYCVCSTITTLGYGDKSFSTTGGRAFGVVWI 249
GTIF VE + +DA Y T+TT+G G+ T G+ F +++I
Sbjct: 38 GTIFYSTVEGLRPIDALYFSVVTLTTVGAGNFEPQTDFGKIFTILYI 84
>pdb|2AHY|A Chain A, Na+ Complex Of The Nak Channel
pdb|2AHY|B Chain B, Na+ Complex Of The Nak Channel
pdb|2AHZ|A Chain A, K+ Complex Of The Nak Channel
pdb|2AHZ|B Chain B, K+ Complex Of The Nak Channel
Length = 110
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 39/60 (65%), Gaps = 3/60 (5%)
Query: 91 SQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGMFLSKAA 150
S +EGL+ +D++YF +VT+TTVG G+ P + K+ + ++F G+GLV F+ K A
Sbjct: 43 STVEGLRP---IDALYFSVVTLTTVGDGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLA 99
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 28/47 (59%)
Query: 203 GTIFLVVVEKMSFVDAFYCVCSTITTLGYGDKSFSTTGGRAFGVVWI 249
GTIF VE + +DA Y T+TT+G G+ S T G+ F +++I
Sbjct: 38 GTIFYSTVEGLRPIDALYFSVVTLTTVGDGNFSPQTDFGKIFTILYI 84
>pdb|4H33|A Chain A, Crystal Structure Of A Voltage-gated K+ Channel Pore
Module In A Closed State In Lipid Membranes, Tetragonal
Crystal Form
pdb|4H37|A Chain A, Crystal Structure Of A Voltage-gated K+ Channel Pore
Domain In A Closed State In Lipid Membranes
pdb|4H37|B Chain B, Crystal Structure Of A Voltage-gated K+ Channel Pore
Domain In A Closed State In Lipid Membranes
Length = 137
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 37/62 (59%)
Query: 97 KTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGMFLSKAADYLVDK 156
+ N D++++ IVT TTVGYGD+VP + + ++L+ + G+ +GM S ++ K
Sbjct: 40 EINNYPDALWWAIVTATTVGYGDIVPVTPIGRILASIMMLFGIAFIGMITSTITNFFRCK 99
Query: 157 QE 158
+
Sbjct: 100 KP 101
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 45/103 (43%), Gaps = 15/103 (14%)
Query: 211 EKMSFVDAFYCVCSTITTLGYGDKSFSTTGGRA-------FGVVWISSSTMTLAQFFLYV 263
E ++ DA + T TT+GYGD T GR FG+ +I T T+ FF
Sbjct: 40 EINNYPDALWWAIVTATTVGYGDIVPVTPIGRILASIMMLFGIAFIGMITSTITNFFRCK 99
Query: 264 AEFNTEKRQKALVNWVLTRKMTHVDLEAADIDEDGVVSAAEFI 306
N+ Q+A K+T + E D+ ++ + +F+
Sbjct: 100 KPTNSST-QRA-------NKITQLISETPDLTKEEIAVVEQFL 134
>pdb|2A0L|A Chain A, Crystal Structure Of Kvap-33h1 Fv Complex
pdb|2A0L|B Chain B, Crystal Structure Of Kvap-33h1 Fv Complex
Length = 241
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 34/58 (58%)
Query: 82 GSLSFYAVNSQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGM 139
G+ + Y V + D++++ +VT TTVGYGD+VP + + K++ A + TG+
Sbjct: 159 GAFAIYIVEYPDPNSSIKSVFDALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLTGI 216
>pdb|1ORQ|C Chain C, X-Ray Structure Of A Voltage-Dependent Potassium Channel
In Complex With An Fab
Length = 223
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 34/58 (58%)
Query: 82 GSLSFYAVNSQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGM 139
G+ + Y V + D++++ +VT TTVGYGD+VP + + K++ A + TG+
Sbjct: 147 GAFAIYIVEYPDPNSSIKSVFDALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLTGI 204
>pdb|4HYO|A Chain A, Crystal Structure Of Mthk Pore
pdb|4HYO|B Chain B, Crystal Structure Of Mthk Pore
pdb|4HYO|C Chain C, Crystal Structure Of Mthk Pore
pdb|4HYO|D Chain D, Crystal Structure Of Mthk Pore
pdb|4HYO|E Chain E, Crystal Structure Of Mthk Pore
pdb|4HYO|F Chain F, Crystal Structure Of Mthk Pore
pdb|4HYO|G Chain G, Crystal Structure Of Mthk Pore
pdb|4HYO|H Chain H, Crystal Structure Of Mthk Pore
pdb|4HZ3|D Chain D, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|C Chain C, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|A Chain A, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|B Chain B, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|E Chain E, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|F Chain F, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|G Chain G, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|H Chain H, Mthk Pore Crystallized In Presence Of Tbsb
Length = 91
Score = 42.4 bits (98), Expect = 4e-04, Method: Composition-based stats.
Identities = 20/87 (22%), Positives = 46/87 (52%), Gaps = 7/87 (8%)
Query: 70 RVLVYLAAYLGGGSLSFYAVNSQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKL 129
R+L+ + A + G+ F+ + + + S+Y+ VT+ TVGYGD P++ +
Sbjct: 12 RILLLVLAVIIYGTAGFHFIEGESWTV-------SLYWTFVTIATVGYGDYSPHTPLGMY 64
Query: 130 LSCAFVFTGMGLVGMFLSKAADYLVDK 156
+C + G+G + + + ++L+++
Sbjct: 65 FTCTLIVLGIGTFAVAVERLLEFLINR 91
>pdb|3K06|A Chain A, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Ntpp,
K+ Complex
pdb|3K06|B Chain B, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Ntpp,
K+ Complex
pdb|3K08|A Chain A, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Ntpp,
Na+ Complex
pdb|3K08|B Chain B, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Ntpp,
Na+ Complex
Length = 96
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 37/60 (61%), Gaps = 4/60 (6%)
Query: 91 SQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGMFLSKAA 150
S +EGL+ +D++YF +VT+TTVG P + K+ + ++F G+GLV F+ K A
Sbjct: 26 STVEGLRP---IDALYFSVVTLTTVG-NTPPPQTDFGKIFTILYIFIGIGLVFGFIHKLA 81
Score = 28.1 bits (61), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 203 GTIFLVVVEKMSFVDAFYCVCSTITTLGYGDKSFSTTGGRAFGVVWI 249
GTIF VE + +DA Y T+TT+G T G+ F +++I
Sbjct: 21 GTIFYSTVEGLRPIDALYFSVVTLTTVGNTPPP-QTDFGKIFTILYI 66
>pdb|3K0D|A Chain A, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Etpp,
K+ Complex
pdb|3K0D|B Chain B, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Etpp,
K+ Complex
pdb|3K0G|A Chain A, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Etpp,
Na+ Complex
pdb|3K0G|B Chain B, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Etpp,
Na+ Complex
Length = 96
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 37/60 (61%), Gaps = 4/60 (6%)
Query: 91 SQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGMFLSKAA 150
S +EGL+ +D++YF +VT+TTVG P + K+ + ++F G+GLV F+ K A
Sbjct: 26 STVEGLRP---IDALYFSVVTLTTVGETP-PPQTDFGKIFTILYIFIGIGLVFGFIHKLA 81
Score = 28.1 bits (61), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 203 GTIFLVVVEKMSFVDAFYCVCSTITTLGYGDKSFSTTGGRAFGVVWI 249
GTIF VE + +DA Y T+TT+G T G+ F +++I
Sbjct: 21 GTIFYSTVEGLRPIDALYFSVVTLTTVGETPPP-QTDFGKIFTILYI 66
>pdb|3K03|A Chain A, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Dtpp,
K+ Complex
pdb|3K03|B Chain B, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Dtpp,
K+ Complex
pdb|3K04|A Chain A, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Dtpp,
Na+ Complex
pdb|3K04|B Chain B, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Dtpp,
Na+ Complex
Length = 96
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 37/60 (61%), Gaps = 4/60 (6%)
Query: 91 SQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGMFLSKAA 150
S +EGL+ +D++YF +VT+TTVG P + K+ + ++F G+GLV F+ K A
Sbjct: 26 STVEGLRP---IDALYFSVVTLTTVG-DTPPPQTDFGKIFTILYIFIGIGLVFGFIHKLA 81
>pdb|3R65|A Chain A, Mthk Channel Pore E92q Mutant
Length = 82
Score = 40.4 bits (93), Expect = 0.001, Method: Composition-based stats.
Identities = 20/85 (23%), Positives = 44/85 (51%), Gaps = 7/85 (8%)
Query: 70 RVLVYLAAYLGGGSLSFYAVNSQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKL 129
R+L+ + A + G+ F+ + + + S+Y+ VT+ TVGYGD P++ +
Sbjct: 5 RILLLVLAVIIYGTAGFHFIEGESWTV-------SLYWTFVTIATVGYGDYSPHTPLGMY 57
Query: 130 LSCAFVFTGMGLVGMFLSKAADYLV 154
+C + G+G + + + ++L+
Sbjct: 58 FTCTLIVLGIGTFAVAVQRLLEFLI 82
>pdb|3LDC|A Chain A, High Resolution Open Mthk Pore Structure Crystallized In
100 Mm K+
pdb|3LDE|A Chain A, High Resolution Open Mthk Pore Structure Crystallized In
100 Mm K+ And Further Soaked In 100 Mm Na+
Length = 82
Score = 40.4 bits (93), Expect = 0.001, Method: Composition-based stats.
Identities = 20/85 (23%), Positives = 44/85 (51%), Gaps = 7/85 (8%)
Query: 70 RVLVYLAAYLGGGSLSFYAVNSQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKL 129
R+L+ + A + G+ F+ + + + S+Y+ VT+ TVGYGD P++ +
Sbjct: 5 RILLLVLAVIIYGTAGFHFIEGESWTV-------SLYWTFVTIATVGYGDYSPHTPLGMY 57
Query: 130 LSCAFVFTGMGLVGMFLSKAADYLV 154
+C + G+G + + + ++L+
Sbjct: 58 FTCTLIVLGIGTFAVAVERLLEFLI 82
>pdb|3LDD|A Chain A, High Resolution Open Mthk Pore Structure Crystallized In
100 Mm K+ And Further Soaked In 99 Mm Na+1 MM K+
Length = 82
Score = 40.0 bits (92), Expect = 0.002, Method: Composition-based stats.
Identities = 20/85 (23%), Positives = 43/85 (50%), Gaps = 7/85 (8%)
Query: 70 RVLVYLAAYLGGGSLSFYAVNSQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKL 129
R+L+ + A + G+ F+ + + + S+Y+ VT+ TVGYGD P + +
Sbjct: 5 RILLLVLAVIIYGTAGFHFIEGESWTV-------SLYWTFVTIATVGYGDYSPRTPLGMY 57
Query: 130 LSCAFVFTGMGLVGMFLSKAADYLV 154
+C + G+G + + + ++L+
Sbjct: 58 FTCTLIVLGIGTFAVAVERLLEFLI 82
>pdb|1LNQ|A Chain A, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|B Chain B, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|C Chain C, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|D Chain D, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|E Chain E, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|F Chain F, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|G Chain G, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|H Chain H, Crystal Structure Of Mthk At 3.3 A
Length = 336
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/93 (21%), Positives = 50/93 (53%), Gaps = 7/93 (7%)
Query: 70 RVLVYLAAYLGGGSLSFYAVNSQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKL 129
R+L+ + A + G+ F+ + + + S+Y+ VT+ TVGYGD P++ +
Sbjct: 22 RILLLVLAVIIYGTAGFHFIEGESWTV-------SLYWTFVTIATVGYGDYSPSTPLGMY 74
Query: 130 LSCAFVFTGMGLVGMFLSKAADYLVDKQEILLV 162
+ + G+G + + + ++L++++++ L+
Sbjct: 75 FTVTLIVLGIGTFAVAVERLLEFLINREQMKLM 107
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 36/85 (42%)
Query: 203 GTIFLVVVEKMSFVDAFYCVCSTITTLGYGDKSFSTTGGRAFGVVWISSSTMTLAQFFLY 262
GT +E S+ + Y TI T+GYGD S ST G F V I T A
Sbjct: 34 GTAGFHFIEGESWTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVER 93
Query: 263 VAEFNTEKRQKALVNWVLTRKMTHV 287
+ EF + Q L+ + K HV
Sbjct: 94 LLEFLINREQMKLMGLIDVAKSRHV 118
>pdb|3EFF|K Chain K, The Crystal Structure Of Full-Length Kcsa In Its Closed
Conformation
pdb|3EFF|L Chain L, The Crystal Structure Of Full-Length Kcsa In Its Closed
Conformation
pdb|3EFF|M Chain M, The Crystal Structure Of Full-Length Kcsa In Its Closed
Conformation
pdb|3EFF|N Chain N, The Crystal Structure Of Full-Length Kcsa In Its Closed
Conformation
Length = 139
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 33/55 (60%)
Query: 104 SIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGMFLSKAADYLVDKQE 158
++++ + T TTVGYGDL P ++ +L++ + G+ G+ + A + V +++
Sbjct: 44 ALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGREQ 98
>pdb|2A9H|A Chain A, Nmr Structural Studies Of A Potassium Channel
Charybdotoxin Complex
pdb|2A9H|B Chain B, Nmr Structural Studies Of A Potassium Channel
Charybdotoxin Complex
pdb|2A9H|C Chain C, Nmr Structural Studies Of A Potassium Channel
Charybdotoxin Complex
pdb|2A9H|D Chain D, Nmr Structural Studies Of A Potassium Channel
Charybdotoxin Complex
Length = 155
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 33/56 (58%)
Query: 103 DSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGMFLSKAADYLVDKQE 158
D++++ + T TTVGYGDL P ++ + ++ + G+ G+ + A + V +++
Sbjct: 87 DALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSYGLVFAAVATWFVGREQ 142
Score = 32.3 bits (72), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 29/61 (47%)
Query: 213 MSFVDAFYCVCSTITTLGYGDKSFSTTGGRAFGVVWISSSTMTLAQFFLYVAEFNTEKRQ 272
+S+ DA + T TT+GYGD T GR VV + + + F VA + + Q
Sbjct: 83 ISYPDALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSYGLVFAAVATWFVGREQ 142
Query: 273 K 273
+
Sbjct: 143 E 143
>pdb|3OGC|C Chain C, Kcsa E71a Variant In Presence Of Na+
Length = 131
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 33/55 (60%)
Query: 104 SIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGMFLSKAADYLVDKQE 158
++++ + T TTVGYGDL P ++ +L++ + G+ G+ + A + V +++
Sbjct: 72 ALWWSVATATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGREQ 126
>pdb|3LNM|B Chain B, F233w Mutant Of The Kv2.1 Paddle-Kv1.2 Chimera Channel
pdb|3LNM|D Chain D, F233w Mutant Of The Kv2.1 Paddle-Kv1.2 Chimera Channel
Length = 514
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 26/35 (74%), Gaps = 2/35 (5%)
Query: 101 ILDSIYFCIVTMTTVGYGDLVPNSVVSKLLS--CA 133
I D+ ++ +V+MTTVGYGD+VP ++ K++ CA
Sbjct: 376 IPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCA 410
Score = 34.7 bits (78), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 26/44 (59%)
Query: 214 SFVDAFYCVCSTITTLGYGDKSFSTTGGRAFGVVWISSSTMTLA 257
S DAF+ ++TT+GYGD +T GG+ G + + +T+A
Sbjct: 375 SIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIA 418
>pdb|2R9R|B Chain B, Shaker Family Voltage Dependent Potassium Channel
(Kv1.2-Kv2.1 Paddle Chimera Channel) In Association With
Beta Subunit
pdb|2R9R|H Chain H, Shaker Family Voltage Dependent Potassium Channel
(Kv1.2-Kv2.1 Paddle Chimera Channel) In Association With
Beta Subunit
Length = 514
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 26/35 (74%), Gaps = 2/35 (5%)
Query: 101 ILDSIYFCIVTMTTVGYGDLVPNSVVSKLLS--CA 133
I D+ ++ +V+MTTVGYGD+VP ++ K++ CA
Sbjct: 376 IPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCA 410
Score = 34.7 bits (78), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 26/44 (59%)
Query: 214 SFVDAFYCVCSTITTLGYGDKSFSTTGGRAFGVVWISSSTMTLA 257
S DAF+ ++TT+GYGD +T GG+ G + + +T+A
Sbjct: 375 SIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIA 418
>pdb|3LUT|B Chain B, A Structural Model For The Full-Length Shaker Potassium
Channel Kv1.2
Length = 499
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 26/35 (74%), Gaps = 2/35 (5%)
Query: 101 ILDSIYFCIVTMTTVGYGDLVPNSVVSKLLS--CA 133
I D+ ++ +V+MTTVGYGD+VP ++ K++ CA
Sbjct: 361 IPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCA 395
Score = 34.7 bits (78), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 26/44 (59%)
Query: 214 SFVDAFYCVCSTITTLGYGDKSFSTTGGRAFGVVWISSSTMTLA 257
S DAF+ ++TT+GYGD +T GG+ G + + +T+A
Sbjct: 360 SIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIA 403
>pdb|2A79|B Chain B, Mammalian Shaker Kv1.2 Potassium Channel- Beta Subunit
Complex
Length = 499
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 26/35 (74%), Gaps = 2/35 (5%)
Query: 101 ILDSIYFCIVTMTTVGYGDLVPNSVVSKLLS--CA 133
I D+ ++ +V+MTTVGYGD+VP ++ K++ CA
Sbjct: 361 IPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCA 395
Score = 34.7 bits (78), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 26/44 (59%)
Query: 214 SFVDAFYCVCSTITTLGYGDKSFSTTGGRAFGVVWISSSTMTLA 257
S DAF+ ++TT+GYGD +T GG+ G + + +T+A
Sbjct: 360 SIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIA 403
>pdb|3OUS|A Chain A, Mthk Channel Pore T59a Mutant
Length = 82
Score = 38.9 bits (89), Expect = 0.005, Method: Composition-based stats.
Identities = 19/85 (22%), Positives = 43/85 (50%), Gaps = 7/85 (8%)
Query: 70 RVLVYLAAYLGGGSLSFYAVNSQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKL 129
R+L+ + A + G+ F+ + + + S+Y+ VT+ VGYGD P++ +
Sbjct: 5 RILLLVLAVIIYGTAGFHFIEGESWTV-------SLYWTFVTIAAVGYGDYSPHTPLGMY 57
Query: 130 LSCAFVFTGMGLVGMFLSKAADYLV 154
+C + G+G + + + ++L+
Sbjct: 58 FTCTLIVLGIGTFAVAVERLLEFLI 82
>pdb|3UM7|A Chain A, Crystal Structure Of The Human Two Pore Domain K+ Ion
Channel Traak (K2p4.1)
pdb|3UM7|B Chain B, Crystal Structure Of The Human Two Pore Domain K+ Ion
Channel Traak (K2p4.1)
pdb|4I9W|A Chain A, Human Two Pore Domain K+ Channel Traak (k2p4.1) - Fab
Complex Structure
pdb|4I9W|B Chain B, Human Two Pore Domain K+ Channel Traak (k2p4.1) - Fab
Complex Structure
Length = 309
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 54/133 (40%), Gaps = 9/133 (6%)
Query: 103 DSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGMFLSKAADYLVD--KQEIL 160
+ +F +TT+GYG++ + +L + G+ L G+ L+ D L + I
Sbjct: 118 SAFFFSGTIITTIGYGNVALRTDAGRLFCIFYALVGIPLFGILLAGVGDRLGSSLRHGIG 177
Query: 161 LVKALHRYQKVGPTDILKEIETNKVRYKCXXXXXXXXXXXXXGTIFLVVVEKMSFVDAFY 220
++A+ V P E +V T +E S ++A Y
Sbjct: 178 HIEAIFLKWHVPP-------ELVRVLSAMLFLLIGCLLFVLTPTFVFCYMEDWSKLEAIY 230
Query: 221 CVCSTITTLGYGD 233
V T+TT+G+GD
Sbjct: 231 FVIVTLTTVGFGD 243
Score = 34.7 bits (78), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 14/23 (60%), Positives = 19/23 (82%)
Query: 102 LDSIYFCIVTMTTVGYGDLVPNS 124
L++IYF IVT+TTVG+GD V +
Sbjct: 226 LEAIYFVIVTLTTVGFGDYVAGA 248
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 217 DAFYCVCSTITTLGYGDKSFSTTGGRAF 244
AF+ + ITT+GYG+ + T GR F
Sbjct: 118 SAFFFSGTIITTIGYGNVALRTDAGRLF 145
>pdb|3IFX|A Chain A, Crystal Structure Of The Spin-Labeled Kcsa Mutant V48r1
pdb|3IFX|B Chain B, Crystal Structure Of The Spin-Labeled Kcsa Mutant V48r1
pdb|3IFX|C Chain C, Crystal Structure Of The Spin-Labeled Kcsa Mutant V48r1
pdb|3IFX|D Chain D, Crystal Structure Of The Spin-Labeled Kcsa Mutant V48r1
Length = 129
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 33/55 (60%)
Query: 104 SIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGMFLSKAADYLVDKQE 158
++++ + T TTVGYGDL P ++ +L++ + G+ G+ + A + V +++
Sbjct: 65 ALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGREQ 119
>pdb|3RBZ|A Chain A, Mthk Channel, Ca2+-Bound
pdb|3RBZ|B Chain B, Mthk Channel, Ca2+-Bound
pdb|3RBZ|C Chain C, Mthk Channel, Ca2+-Bound
pdb|3RBZ|D Chain D, Mthk Channel, Ca2+-Bound
Length = 340
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/93 (20%), Positives = 49/93 (52%), Gaps = 7/93 (7%)
Query: 70 RVLVYLAAYLGGGSLSFYAVNSQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKL 129
R+L+ + A + G+ F+ + + + S+Y+ VT+ TVGYGD P++ +
Sbjct: 22 RILLLVLAVIIYGTAGFHFIEGESWTV-------SLYWTFVTIATVGYGDYSPSTPLGMY 74
Query: 130 LSCAFVFTGMGLVGMFLSKAADYLVDKQEILLV 162
+ + G+ + +++ +L++++++ L+
Sbjct: 75 FTVTLIVLGIATFAVAVARLLTFLINREQMKLI 107
Score = 36.2 bits (82), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 35/85 (41%)
Query: 203 GTIFLVVVEKMSFVDAFYCVCSTITTLGYGDKSFSTTGGRAFGVVWISSSTMTLAQFFLY 262
GT +E S+ + Y TI T+GYGD S ST G F V I T A
Sbjct: 34 GTAGFHFIEGESWTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIATFAVAVAR 93
Query: 263 VAEFNTEKRQKALVNWVLTRKMTHV 287
+ F + Q L+ + K HV
Sbjct: 94 LLTFLINREQMKLIGLIDVAKSRHV 118
>pdb|2WLI|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
Length = 301
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 28/57 (49%)
Query: 83 SLSFYAVNSQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGM 139
+L++ A IE + D+ +F + TM T+GYG L+P ++ L GM
Sbjct: 65 ALAYLACGDVIENARPGSFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGM 121
>pdb|3ZRS|A Chain A, X-Ray Crystal Structure Of A Kirbac Potassium Channel
Highlights A Mechanism Of Channel Opening At The
Bundle-Crossing Gate
Length = 301
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 28/57 (49%)
Query: 83 SLSFYAVNSQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGM 139
+L++ A IE + D+ +F + TM T+GYG L+P ++ L GM
Sbjct: 65 ALAYLACGDVIENARPGSFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGM 121
>pdb|2X6B|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2X6C|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
Length = 301
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 28/57 (49%)
Query: 83 SLSFYAVNSQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGM 139
+L++ A IE + D+ +F + TM T+GYG L+P ++ L GM
Sbjct: 65 ALAYLACGDVIENARPGSFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGM 121
>pdb|1XL4|A Chain A, Intermediate Gating Structure 1 Of The Inwardly Rectifying
K+ Channel Kirbac3.1
pdb|1XL4|B Chain B, Intermediate Gating Structure 1 Of The Inwardly Rectifying
K+ Channel Kirbac3.1
pdb|1XL6|A Chain A, Intermediate Gating Structure 2 Of The Inwardly Rectifying
K+ Channel Kirbac3.1
pdb|1XL6|B Chain B, Intermediate Gating Structure 2 Of The Inwardly Rectifying
K+ Channel Kirbac3.1
pdb|2WLH|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLI|B Chain B, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLJ|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLJ|B Chain B, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLK|A Chain A, Structure Of The Atp-Sensitive Inward Rectifier Potassium
Channel From Magnetospirillum Magnetotacticum
pdb|2WLK|B Chain B, Structure Of The Atp-Sensitive Inward Rectifier Potassium
Channel From Magnetospirillum Magnetotacticum
pdb|2WLM|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLM|B Chain B, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLM|C Chain C, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLM|D Chain D, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLO|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLO|B Chain B, Potassium Channel From Magnetospirillum Magnetotacticum
Length = 301
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 28/57 (49%)
Query: 83 SLSFYAVNSQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGM 139
+L++ A IE + D+ +F + TM T+GYG L+P ++ L GM
Sbjct: 65 ALAYLACGDVIENARPGSFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGM 121
>pdb|2X6A|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
Length = 301
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 28/57 (49%)
Query: 83 SLSFYAVNSQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGM 139
+L++ A IE + D+ +F + TM T+GYG L+P ++ L GM
Sbjct: 65 ALAYLACGDVIENARPGSFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGM 121
>pdb|2WLN|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLN|B Chain B, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLN|C Chain C, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLN|D Chain D, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLN|E Chain E, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLN|F Chain F, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLN|G Chain G, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLN|H Chain H, Potassium Channel From Magnetospirillum Magnetotacticum
Length = 301
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 28/57 (49%)
Query: 83 SLSFYAVNSQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGM 139
+L++ A IE + D+ +F + TM T+GYG L+P ++ L GM
Sbjct: 65 ALAYLACGDVIENARPGSFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGM 121
>pdb|3STZ|C Chain C, Kcsa Potassium Channel Mutant Y82c With Nitroxide Spin
Label
Length = 102
Score = 37.0 bits (84), Expect = 0.015, Method: Composition-based stats.
Identities = 15/55 (27%), Positives = 33/55 (60%)
Query: 104 SIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGMFLSKAADYLVDKQE 158
++++ + T TTVGYGDL P ++ +L++ + G+ G+ + A + V +++
Sbjct: 43 ALWWSVETATTVGYGDLCPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGREQ 97
>pdb|3STL|C Chain C, Kcsa Potassium Channel Mutant Y82c With Cadmium Bound
Length = 103
Score = 37.0 bits (84), Expect = 0.015, Method: Composition-based stats.
Identities = 15/55 (27%), Positives = 33/55 (60%)
Query: 104 SIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGMFLSKAADYLVDKQE 158
++++ + T TTVGYGDL P ++ +L++ + G+ G+ + A + V +++
Sbjct: 44 ALWWSVETATTVGYGDLCPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGREQ 98
>pdb|3OR7|C Chain C, On The Structural Basis Of Modal Gating Behavior In
K+channels - E71i
Length = 103
Score = 37.0 bits (84), Expect = 0.018, Method: Composition-based stats.
Identities = 14/55 (25%), Positives = 33/55 (60%)
Query: 104 SIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGMFLSKAADYLVDKQE 158
++++ ++T TTVGYGDL P ++ + ++ + G+ G+ + A + V +++
Sbjct: 44 ALWWSVITATTVGYGDLYPVTLWGRCVAVVVMVAGITSFGLVTAALATWFVGREQ 98
>pdb|1F6G|A Chain A, Potassium Channel (Kcsa) Full-Length Fold
pdb|1F6G|B Chain B, Potassium Channel (Kcsa) Full-Length Fold
pdb|1F6G|C Chain C, Potassium Channel (Kcsa) Full-Length Fold
pdb|1F6G|D Chain D, Potassium Channel (Kcsa) Full-Length Fold
Length = 160
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 32/55 (58%)
Query: 104 SIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGMFLSKAADYLVDKQE 158
++++ + T TTVGYGDL P ++ + ++ + G+ G+ + A + V +++
Sbjct: 65 ALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSFGLVTAALATWFVGREQ 119
>pdb|2ATK|C Chain C, Structure Of A Mutant Kcsa K+ Channel
Length = 124
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 32/55 (58%)
Query: 104 SIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGMFLSKAADYLVDKQE 158
++++ + T TTVGYGDL P ++ + ++ + G+ G+ + A + V +++
Sbjct: 65 ALWWSVATATTVGYGDLYPVTLWGRCVAVVVMVAGITSFGLVTAALATWFVGREQ 119
>pdb|2WLL|A Chain A, Potassium Channel From Burkholderia Pseudomallei
Length = 333
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 25/41 (60%)
Query: 104 SIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGM 144
+ +F + T+ TVGYGD+ P +V + ++ +F GM + +
Sbjct: 100 AFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIAL 140
>pdb|1P7B|A Chain A, Crystal Structure Of An Inward Rectifier Potassium Channel
pdb|1P7B|B Chain B, Crystal Structure Of An Inward Rectifier Potassium Channel
pdb|2WLL|B Chain B, Potassium Channel From Burkholderia Pseudomallei
Length = 333
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 25/41 (60%)
Query: 104 SIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGM 144
+ +F + T+ TVGYGD+ P +V + ++ +F GM + +
Sbjct: 100 AFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIAL 140
>pdb|3HPL|C Chain C, Kcsa E71h-F103a Mutant In The Closed State
Length = 124
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 32/55 (58%)
Query: 104 SIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGMFLSKAADYLVDKQE 158
++++ + T TTVGYGDL P ++ + ++ + G+ G+ + A + V +++
Sbjct: 65 ALWWSVHTATTVGYGDLYPVTLWGRCVAVVVMVAGITSAGLVTAALATWFVGREQ 119
>pdb|3PJS|K Chain K, Mechanism Of Activation Gating In The Full-Length Kcsa K+
Channel
pdb|3PJS|L Chain L, Mechanism Of Activation Gating In The Full-Length Kcsa K+
Channel
pdb|3PJS|M Chain M, Mechanism Of Activation Gating In The Full-Length Kcsa K+
Channel
pdb|3PJS|N Chain N, Mechanism Of Activation Gating In The Full-Length Kcsa K+
Channel
Length = 166
Score = 36.2 bits (82), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 30/51 (58%)
Query: 104 SIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGMFLSKAADYLV 154
++++ + T TTVGYGDL P ++ +L++ + G+ G+ + A + V
Sbjct: 71 ALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFV 121
>pdb|2QKS|A Chain A, Crystal Structure Of A Kir3.1-Prokaryotic Kir Channel
Chimera
pdb|2QKS|B Chain B, Crystal Structure Of A Kir3.1-Prokaryotic Kir Channel
Chimera
Length = 321
Score = 35.8 bits (81), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 25/41 (60%)
Query: 104 SIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGM 144
+ +F + T+ TVGYGD+ P +V + ++ +F GM + +
Sbjct: 82 AFFFSVETLATVGYGDMHPQTVYAHWIATLEIFVGMSSIAL 122
>pdb|3K21|A Chain A, Crystal Structure Of Carboxy-Terminus Of Pfc0420w
Length = 191
Score = 35.8 bits (81), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 274 ALVNWVLTRKMTHVDLEAADIDEDGVVSAAEF--IIYKLKEMGKISQEDIALVMEEFQDL 331
AL L++K+ + D+D DG ++ AE I+Y + G I+Q D+ V +D+
Sbjct: 113 ALDRKQLSKKLIYCAFRVFDVDNDGEITTAELAHILYNGNKKGNITQRDVNRVKRMIRDV 172
Query: 332 DFDQSGTLS 340
D + G +
Sbjct: 173 DKNNDGKID 181
>pdb|1ZWI|C Chain C, Structure Of Mutant Kcsa Potassium Channel
Length = 103
Score = 35.8 bits (81), Expect = 0.040, Method: Composition-based stats.
Identities = 14/55 (25%), Positives = 32/55 (58%)
Query: 104 SIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGMFLSKAADYLVDKQE 158
++++ + T TTVGYGDL P ++ + ++ + G+ G+ + A + V +++
Sbjct: 44 ALWWSVATATTVGYGDLYPVTLWGRCVAVVVMVAGITSFGLVTAALATWFVGREQ 98
>pdb|2JK5|C Chain C, Potassium Channel Kcsa In Complex With Tetrabutylammonium
In High K
pdb|2W0F|C Chain C, Potassium Channel Kcsa-Fab Complex With Tetraoctylammonium
Length = 124
Score = 35.8 bits (81), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 32/55 (58%)
Query: 104 SIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGMFLSKAADYLVDKQE 158
++++ + T TTVGYGDL P ++ + ++ + G+ G+ + A + V +++
Sbjct: 65 ALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSFGLVTAALATWFVGREQ 119
>pdb|1K4D|C Chain C, Potassium Channel Kcsa-Fab Complex In Low Concentration Of
K+
pdb|1K4C|C Chain C, Potassium Channel Kcsa-Fab Complex In High Concentration
Of K+
pdb|1R3I|C Chain C, Potassium Channel Kcsa-Fab Complex In Rb+
pdb|1R3J|C Chain C, Potassium Channel Kcsa-Fab Complex In High Concentration
Of Tl+
pdb|1R3K|C Chain C, Potassium Channel Kcsa-Fab Complex In Low Concentration Of
Tl+
pdb|1R3L|C Chain C, Potassium Channel Kcsa-Fab Complex In Cs+
pdb|2BOB|C Chain C, Potassium Channel Kcsa-Fab Complex In Thallium With
Tetrabutylammonium (Tba)
pdb|2BOC|C Chain C, Potassium Channel Kcsa-Fab Complex In Thallium With
Tetraethylarsonium (Teas)
pdb|2HVJ|C Chain C, Crystal Structure Of Kcsa-fab-tba Complex In Low K+
pdb|2HVK|C Chain C, Crystal Structure Of The Kcsa-Fab-Tba Complex In High K+
pdb|2ITC|C Chain C, Potassium Channel Kcsa-Fab Complex In Sodium Chloride
pdb|2ITD|C Chain C, Potassium Channel Kcsa-Fab Complex In Barium Chloride
pdb|3GB7|C Chain C, Potassium Channel Kcsa-Fab Complex In Li+
pdb|3IGA|C Chain C, Potassium Channel Kcsa-Fab Complex In Li+ And K+
Length = 124
Score = 35.8 bits (81), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 32/55 (58%)
Query: 104 SIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGMFLSKAADYLVDKQE 158
++++ + T TTVGYGDL P ++ + ++ + G+ G+ + A + V +++
Sbjct: 65 ALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSFGLVTAALATWFVGREQ 119
>pdb|1JVM|A Chain A, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Rubidium
pdb|1JVM|B Chain B, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Rubidium
pdb|1JVM|C Chain C, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Rubidium
pdb|1JVM|D Chain D, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Rubidium
Length = 125
Score = 35.4 bits (80), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 32/55 (58%)
Query: 104 SIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGMFLSKAADYLVDKQE 158
++++ + T TTVGYGDL P ++ + ++ + G+ G+ + A + V +++
Sbjct: 65 ALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSFGLVTAALATWFVGREQ 119
>pdb|1S5H|C Chain C, Potassium Channel Kcsa-Fab Complex T75c Mutant In K+
Length = 124
Score = 35.4 bits (80), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 32/55 (58%)
Query: 104 SIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGMFLSKAADYLVDKQE 158
++++ + T T VGYGDL P ++ +L++ + G+ G+ + A + V +++
Sbjct: 65 ALWWSVETATCVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGREQ 119
>pdb|1J95|A Chain A, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Potassium
pdb|1J95|B Chain B, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Potassium
pdb|1J95|C Chain C, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Potassium
pdb|1J95|D Chain D, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Potassium
Length = 125
Score = 35.4 bits (80), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 32/55 (58%)
Query: 104 SIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGMFLSKAADYLVDKQE 158
++++ + T TTVGYGDL P ++ + ++ + G+ G+ + A + V +++
Sbjct: 65 ALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSFGLVTAALATWFVGREQ 119
>pdb|4GX5|A Chain A, Gsuk Channel
pdb|4GX5|B Chain B, Gsuk Channel
pdb|4GX5|C Chain C, Gsuk Channel
pdb|4GX5|D Chain D, Gsuk Channel
Length = 565
Score = 35.4 bits (80), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 15/101 (14%)
Query: 60 LFGKPRPNFKRVLVY----LAAYLGGGSLSFYAVNSQIEGLKTNEILDSIYFCIVTMTTV 115
L G+ R N K +L+Y L L S+ F + +EG + + IY+ I MTT+
Sbjct: 9 LRGRARQNLKVLLLYCAFLLVMLLAYASI-FRYLMWHLEG-RAYSFMAGIYWTITVMTTL 66
Query: 116 GYGDLVPNSVVSKLLSCAFVFTGM---------GLVGMFLS 147
G+GD+ S L + +G+ G V MFL+
Sbjct: 67 GFGDITFESDAGYLFASIVTVSGVIFLLIILPFGFVSMFLA 107
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 6/80 (7%)
Query: 214 SFVDAFYCVCSTITTLGYGDKSFSTTGGRAFGVVWISSSTMTLAQFFLYVAEFNTEKRQK 273
SF+ Y + +TTLG+GD +F + G F + S + F L + F
Sbjct: 51 SFMAGIYWTITVMTTLGFGDITFESDAGYLFASIVTVSGVI----FLLIILPFGFVS--M 104
Query: 274 ALVNWVLTRKMTHVDLEAAD 293
L W+ R H +E D
Sbjct: 105 FLAPWIERRLRYHPTIELPD 124
>pdb|4GX0|A Chain A, Crystal Structure Of The Gsuk L97d Mutant
pdb|4GX0|B Chain B, Crystal Structure Of The Gsuk L97d Mutant
pdb|4GX0|C Chain C, Crystal Structure Of The Gsuk L97d Mutant
pdb|4GX0|D Chain D, Crystal Structure Of The Gsuk L97d Mutant
pdb|4GX1|A Chain A, Crystal Structure Of The Gsuk Bound To Adp
pdb|4GX1|B Chain B, Crystal Structure Of The Gsuk Bound To Adp
pdb|4GX1|C Chain C, Crystal Structure Of The Gsuk Bound To Adp
pdb|4GX1|D Chain D, Crystal Structure Of The Gsuk Bound To Adp
pdb|4GX2|A Chain A, Gsuk Channel Bound To Nad
pdb|4GX2|B Chain B, Gsuk Channel Bound To Nad
pdb|4GX2|C Chain C, Gsuk Channel Bound To Nad
pdb|4GX2|D Chain D, Gsuk Channel Bound To Nad
Length = 565
Score = 35.4 bits (80), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 15/101 (14%)
Query: 60 LFGKPRPNFKRVLVY----LAAYLGGGSLSFYAVNSQIEGLKTNEILDSIYFCIVTMTTV 115
L G+ R N K +L+Y L L S+ F + +EG + + IY+ I MTT+
Sbjct: 9 LRGRARQNLKVLLLYCAFLLVMLLAYASI-FRYLMWHLEG-RAYSFMAGIYWTITVMTTL 66
Query: 116 GYGDLVPNSVVSKLLSCAFVFTGM---------GLVGMFLS 147
G+GD+ S L + +G+ G V MFL+
Sbjct: 67 GFGDITFESDAGYLFASIVTVSGVIFLDIILPFGFVSMFLA 107
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 10/82 (12%)
Query: 214 SFVDAFYCVCSTITTLGYGDKSFSTTGGRAFGVVWISSSTMTLAQF--FLYVAEFNTEKR 271
SF+ Y + +TTLG+GD +F + G F + S + L F +V+ F
Sbjct: 51 SFMAGIYWTITVMTTLGFGDITFESDAGYLFASIVTVSGVIFLDIILPFGFVSMF----- 105
Query: 272 QKALVNWVLTRKMTHVDLEAAD 293
L W+ R H +E D
Sbjct: 106 ---LAPWIERRLRYHPTIELPD 124
>pdb|2P7T|C Chain C, Crystal Structure Of Kcsa Mutant
Length = 103
Score = 35.0 bits (79), Expect = 0.061, Method: Composition-based stats.
Identities = 14/55 (25%), Positives = 32/55 (58%)
Query: 104 SIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGMFLSKAADYLVDKQE 158
++++ + T TTVGYGDL P ++ + ++ + G+ G+ + A + V +++
Sbjct: 44 ALWWSVSTATTVGYGDLYPVTLWGRCVAVVVMVAGITSFGLVTAALATWFVGREQ 98
>pdb|3OR6|C Chain C, On The Structural Basis Of Modal Gating Behavior In
K+channels - E71q
Length = 103
Score = 34.7 bits (78), Expect = 0.072, Method: Composition-based stats.
Identities = 14/55 (25%), Positives = 32/55 (58%)
Query: 104 SIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGMFLSKAADYLVDKQE 158
++++ + T TTVGYGDL P ++ + ++ + G+ G+ + A + V +++
Sbjct: 44 ALWWSVQTATTVGYGDLYPVTLWGRCVAVVVMVAGITSFGLVTAALATWFVGREQ 98
>pdb|2HJF|C Chain C, Potassium Channel Kcsa-Fab Complex With Tetrabutylammonium
(Tba)
pdb|2DWD|C Chain C, Crystal Structure Of Kcsa-Fab-Tba Complex In Tl+
pdb|2DWE|C Chain C, Crystal Structure Of Kcsa-Fab-Tba Complex In Rb+
Length = 103
Score = 34.7 bits (78), Expect = 0.077, Method: Composition-based stats.
Identities = 14/55 (25%), Positives = 32/55 (58%)
Query: 104 SIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGMFLSKAADYLVDKQE 158
++++ + T TTVGYGDL P ++ + ++ + G+ G+ + A + V +++
Sbjct: 44 ALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSFGLVTAALATWFVGREQ 98
>pdb|1BL8|A Chain A, Potassium Channel (Kcsa) From Streptomyces Lividans
pdb|1BL8|B Chain B, Potassium Channel (Kcsa) From Streptomyces Lividans
pdb|1BL8|C Chain C, Potassium Channel (Kcsa) From Streptomyces Lividans
pdb|1BL8|D Chain D, Potassium Channel (Kcsa) From Streptomyces Lividans
pdb|2QTO|A Chain A, An Anisotropic Model For Potassium Channel Kcsa
pdb|2QTO|B Chain B, An Anisotropic Model For Potassium Channel Kcsa
pdb|2QTO|C Chain C, An Anisotropic Model For Potassium Channel Kcsa
pdb|2QTO|D Chain D, An Anisotropic Model For Potassium Channel Kcsa
Length = 97
Score = 34.7 bits (78), Expect = 0.077, Method: Composition-based stats.
Identities = 14/55 (25%), Positives = 32/55 (58%)
Query: 104 SIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGMFLSKAADYLVDKQE 158
++++ + T TTVGYGDL P ++ + ++ + G+ G+ + A + V +++
Sbjct: 43 ALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSFGLVTAALATWFVGREQ 97
>pdb|3ACS|A Chain A, Crystal Structure Of Cellvibrio Gilvus Cellobiose
Phosphorylase W488f Mutant
pdb|3ACS|B Chain B, Crystal Structure Of Cellvibrio Gilvus Cellobiose
Phosphorylase W488f Mutant
Length = 842
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 43/96 (44%), Gaps = 8/96 (8%)
Query: 203 GTIFLVVVEKMSFVDAFYCVCSTITTLGYGDKSFSTTGGRAFGVVWISSSTMTLAQFFLY 262
G L ++ + F D C + T +SF TT +A GV + S AQF LY
Sbjct: 496 GPHGLPLIGRADFNDCLNLNCFSTTP----GESFQTTENQAGGV---AESVFIAAQFVLY 548
Query: 263 VAEFNTEKRQKALVNWVLTRKMTHVDLEAADIDEDG 298
AE+ T ++ L + V T +VD A + E G
Sbjct: 549 GAEYATLAERRGLAD-VATEARKYVDEVRAAVLEHG 583
>pdb|3UKM|A Chain A, Crystal Structure Of The Human Two Pore Domain Potassium
Ion Channel K2p1 (Twik-1)
pdb|3UKM|B Chain B, Crystal Structure Of The Human Two Pore Domain Potassium
Ion Channel K2p1 (Twik-1)
pdb|3UKM|C Chain C, Crystal Structure Of The Human Two Pore Domain Potassium
Ion Channel K2p1 (Twik-1)
pdb|3UKM|D Chain D, Crystal Structure Of The Human Two Pore Domain Potassium
Ion Channel K2p1 (Twik-1)
Length = 280
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 17/22 (77%)
Query: 102 LDSIYFCIVTMTTVGYGDLVPN 123
L+S YFC ++++T+G GD VP
Sbjct: 203 LESFYFCFISLSTIGLGDYVPG 224
Score = 31.6 bits (70), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 31/149 (20%), Positives = 60/149 (40%), Gaps = 12/149 (8%)
Query: 88 AVNSQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGMFLS 147
+V SQ G + +++F ++T GYG VP S K + G+ +FL+
Sbjct: 81 SVLSQASGNWNWDFTSALFFASTVLSTTGYGHTVPLSDGGKAFCIIYSVIGIPFTLLFLT 140
Query: 148 KAADYL---VDKQEILLVKALHRYQKVGPTDILKEIETNKVRYKCXXXXXXXXXXXXXGT 204
+ V ++ +L + K I+ + V C
Sbjct: 141 AVVQRITVHVTRRPVLYFHIRWGFSK-QVVAIVHAVLLGFVTVSC--------FFFIPAA 191
Query: 205 IFLVVVEKMSFVDAFYCVCSTITTLGYGD 233
+F V+ + +F+++FY +++T+G GD
Sbjct: 192 VFSVLEDDWNFLESFYFCFISLSTIGLGD 220
>pdb|2IH1|C Chain C, Ion Selectivity In A Semi-Synthetic K+ Channel Locked In
The Conductive Conformation
pdb|2IH3|C Chain C, Ion Selectivity In A Semi-Synthetic K+ Channel Locked In
The Conductive Conformation
Length = 122
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 31/55 (56%)
Query: 104 SIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGMFLSKAADYLVDKQE 158
++++ T TTV YGDL P ++ +L++ + G+ G+ + A + V +++
Sbjct: 65 ALWWACETATTVXYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGREQ 119
>pdb|2NLJ|C Chain C, Potassium Channel Kcsa(M96v)-Fab Complex In Kcl
Length = 124
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 32/55 (58%)
Query: 104 SIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGMFLSKAADYLVDKQE 158
++++ + T TTVGYGDL P ++ + ++ V G+ G+ + A + V +++
Sbjct: 65 ALWWSVETATTVGYGDLYPVTLWGRCVAVVVVVAGITSFGLVTAALATWFVGREQ 119
>pdb|3F5W|C Chain C, Kcsa Potassium Channel In The Open-Inactivated State With
32 A Opening At T112
pdb|3F7V|C Chain C, Kcsa Potassium Channel In The Open-Inactivated State With
23 A Opening At T112
pdb|3F7Y|C Chain C, Kcsa Potassium Channel In The Partially Open State With 17
A Opening At T112
pdb|3FB5|C Chain C, Kcsa Potassium Channel In The Partially Open State With
14.5 A Opening At T112
pdb|3FB6|C Chain C, Kcsa Potassium Channel In The Partially Open State With 16
A Opening At T112
pdb|3FB8|C Chain C, Kcsa Potassium Channel In The Open-Conductive State With
20 At T112 In The Presence Of Rb+ Ion
pdb|3FB7|C Chain C, Open Kcsa Potassium Channel In The Presence Of Rb+ Ion
Length = 104
Score = 32.7 bits (73), Expect = 0.29, Method: Composition-based stats.
Identities = 14/51 (27%), Positives = 29/51 (56%)
Query: 104 SIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGMFLSKAADYLV 154
++++ + T TTVGYGDL P ++ + ++ + G+ G+ + A + V
Sbjct: 45 ALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSFGLVTAALATWFV 95
>pdb|3ACT|A Chain A, Crystal Structure Of Cellvibrio Gilvus Cellobiose
Phosphorylase Histidine Mutant
pdb|3ACT|B Chain B, Crystal Structure Of Cellvibrio Gilvus Cellobiose
Phosphorylase Histidine Mutant
Length = 842
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 43/96 (44%), Gaps = 8/96 (8%)
Query: 203 GTIFLVVVEKMSFVDAFYCVCSTITTLGYGDKSFSTTGGRAFGVVWISSSTMTLAQFFLY 262
G L ++ + + D C + T +SF TT +A GV + S AQF LY
Sbjct: 496 GPHGLPLIGRADWNDCLNLNCFSTTP----GESFQTTENQAGGV---AESVFIAAQFVLY 548
Query: 263 VAEFNTEKRQKALVNWVLTRKMTHVDLEAADIDEDG 298
AE+ T ++ L + V T +VD A + E G
Sbjct: 549 GAEYATLAERRGLAD-VATEARKYVDEVRAAVLEHG 583
>pdb|2CQS|A Chain A, Crystal Structure Of Cellvibrio Gilvus Cellobiose
Phosphorylase Crystallized From Ammonium Sulfate
pdb|2CQS|B Chain B, Crystal Structure Of Cellvibrio Gilvus Cellobiose
Phosphorylase Crystallized From Ammonium Sulfate
pdb|2CQT|A Chain A, Crystal Structure Of Cellvibrio Gilvus Cellobiose
Phosphorylase Crystallized From SodiumPOTASSIUM
PHOSPHATE
pdb|2CQT|B Chain B, Crystal Structure Of Cellvibrio Gilvus Cellobiose
Phosphorylase Crystallized From SodiumPOTASSIUM
PHOSPHATE
pdb|3QFY|A Chain A, Crystal Structure Of Cellvibrio Gilvus Cellobiose
Phosphorylase Complexed With Sulfate And Isofagomine
pdb|3QFY|B Chain B, Crystal Structure Of Cellvibrio Gilvus Cellobiose
Phosphorylase Complexed With Sulfate And Isofagomine
pdb|3QFZ|A Chain A, Crystal Structure Of Cellvibrio Gilvus Cellobiose
Phosphorylase Complexed With Sulfate And
1-Deoxynojirimycin
pdb|3QFZ|B Chain B, Crystal Structure Of Cellvibrio Gilvus Cellobiose
Phosphorylase Complexed With Sulfate And
1-Deoxynojirimycin
pdb|3QG0|A Chain A, Crystal Structure Of Cellvibrio Gilvus Cellobiose
Phosphorylase Complexed With Phosphate And
1-Deoxynojirimycin
pdb|3QG0|B Chain B, Crystal Structure Of Cellvibrio Gilvus Cellobiose
Phosphorylase Complexed With Phosphate And
1-Deoxynojirimycin
Length = 842
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 43/96 (44%), Gaps = 8/96 (8%)
Query: 203 GTIFLVVVEKMSFVDAFYCVCSTITTLGYGDKSFSTTGGRAFGVVWISSSTMTLAQFFLY 262
G L ++ + + D C + T +SF TT +A GV + S AQF LY
Sbjct: 496 GPHGLPLIGRADWNDCLNLNCFSTTP----GESFQTTENQAGGV---AESVFIAAQFVLY 548
Query: 263 VAEFNTEKRQKALVNWVLTRKMTHVDLEAADIDEDG 298
AE+ T ++ L + V T +VD A + E G
Sbjct: 549 GAEYATLAERRGLAD-VATEARKYVDEVRAAVLEHG 583
>pdb|3AFJ|A Chain A, Crystal Structure Of Cellvibrio Gilvus Cellobiose
Phosphorylase Triple Mutant
pdb|3AFJ|B Chain B, Crystal Structure Of Cellvibrio Gilvus Cellobiose
Phosphorylase Triple Mutant
Length = 842
Score = 31.2 bits (69), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 6/68 (8%)
Query: 236 FSTTGGRAFGVV-----WISSSTMTLAQFFLYVAEFNTEKRQKALVNWVLTRKMTHVDLE 290
FSTT G +F + ++ S AQF LY AE+ T ++ L + V T +VD
Sbjct: 517 FSTTPGESFQTIENQAGGVAESVFIAAQFVLYGAEYATLAERRGLAD-VATEARKYVDEV 575
Query: 291 AADIDEDG 298
A + E G
Sbjct: 576 RAAVLEHG 583
>pdb|3AL0|B Chain B, Crystal Structure Of The Glutamine Transamidosome From
Thermotoga Maritima In The Glutamylation State
Length = 482
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Query: 251 SSTMTLAQFFLYVAEFNTEKRQKALVNWVLTRKMTHVDLEAADIDEDGVVSAAEFIIYKL 310
+S+ LA+FF + R K L NW++T + ++ +I E + ++KL
Sbjct: 325 TSSKELAEFFEECVKVVN--RPKDLSNWIMTEVLRELNERNIEITESKLTPQHFADLFKL 382
Query: 311 KEMGKIS 317
+ GKIS
Sbjct: 383 MDEGKIS 389
>pdb|2AAO|A Chain A, Regulatory Apparatus Of Calcium Dependent Protein Kinase
From Arabidopsis Thaliana
pdb|2AAO|B Chain B, Regulatory Apparatus Of Calcium Dependent Protein Kinase
From Arabidopsis Thaliana
Length = 166
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 290 EAADIDEDGVVSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDL 344
+AAD+D G + EFI L + KI +ED F D D SG ++P +L
Sbjct: 70 QAADVDNSGTIDYKEFIAATLH-LNKIEREDHLFAA--FTYFDKDGSGYITPDEL 121
>pdb|3O4Y|A Chain A, Crystal Structure Of Cad Domain Of The Plasmodium Vivax
Cdpk, Pvx_11610
Length = 196
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/63 (22%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 280 LTRKMTHVDLEAADIDEDGVVSAAEF--IIYKLKEMGKISQEDIALVMEEFQDLDFDQSG 337
L++K+ + D+D DG ++ AE +++ + G I++ D+ V + +++D + G
Sbjct: 122 LSKKLIYCAFRVFDVDNDGEITTAELAHVLFNGNKRGNITERDVNQVKKMIREVDKNGDG 181
Query: 338 TLS 340
+
Sbjct: 182 KID 184
>pdb|2K1E|A Chain A, Nmr Studies Of A Channel Protein Without Membranes:
Structure And Dynamics Of Water-Solubilized Kcsa
pdb|2K1E|B Chain B, Nmr Studies Of A Channel Protein Without Membranes:
Structure And Dynamics Of Water-Solubilized Kcsa
pdb|2K1E|C Chain C, Nmr Studies Of A Channel Protein Without Membranes:
Structure And Dynamics Of Water-Solubilized Kcsa
pdb|2K1E|D Chain D, Nmr Studies Of A Channel Protein Without Membranes:
Structure And Dynamics Of Water-Solubilized Kcsa
pdb|2KB1|A Chain A, Nmr Studies Of A Channel Protein Without Membrane:
Structure And Dynamics Of Water-Solubilized Kcsa
pdb|2KB1|B Chain B, Nmr Studies Of A Channel Protein Without Membrane:
Structure And Dynamics Of Water-Solubilized Kcsa
pdb|2KB1|C Chain C, Nmr Studies Of A Channel Protein Without Membrane:
Structure And Dynamics Of Water-Solubilized Kcsa
pdb|2KB1|D Chain D, Nmr Studies Of A Channel Protein Without Membrane:
Structure And Dynamics Of Water-Solubilized Kcsa
Length = 103
Score = 29.3 bits (64), Expect = 3.2, Method: Composition-based stats.
Identities = 15/56 (26%), Positives = 30/56 (53%)
Query: 103 DSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGMFLSKAADYLVDKQE 158
D+I++ + T TTVGYGD P + + ++ + G+ + + + A V ++E
Sbjct: 43 DAIWWSVETATTVGYGDRYPVTEEGRKVAEQVMKAGIEVFALVTAALATDFVRREE 98
>pdb|3K6H|A Chain A, Crystal Structure Of A Nitroreductase Family Protein From
Agrobacterium Tumefaciens Str. C58
pdb|3K6H|B Chain B, Crystal Structure Of A Nitroreductase Family Protein From
Agrobacterium Tumefaciens Str. C58
Length = 197
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 11/45 (24%), Positives = 26/45 (57%)
Query: 291 AADIDEDGVVSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQ 335
A + + G ++ F++Y+ +E ++S+ + + +E+ DLD Q
Sbjct: 43 AVRVPDHGKLAPWRFVVYRGEERVRLSEAALRIALEKNPDLDLQQ 87
>pdb|3I79|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1)
pdb|3I7B|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor Nm-Pp1
pdb|3N51|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor
Rm-1-95
pdb|3SX9|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor,
Rm-1-132
pdb|3SXF|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor,
Rm-1-89
pdb|3T3U|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor,
Rm-1-130
pdb|3T3V|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor,
Rm-1-87
pdb|3UPX|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Inhibitor Uw1300
pdb|3UPZ|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumpless Bki Analog Uw1243
pdb|3V51|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Inhibitor Rm-1-176
pdb|3V5P|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Inhibitor Uw1288
pdb|3V5T|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Inhibitor Uw1299
Length = 484
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Query: 289 LEAADIDEDGVVSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDL 344
L+A D D++G + +EF+ + +S+E + F+ D D SG +S ++L
Sbjct: 388 LDAVDFDKNGYIEYSEFVTVAMDRKTLLSRERLERA---FRMFDSDNSGKISSTEL 440
>pdb|3KU2|A Chain A, Crystal Structure Of Inactivated Form Of Cdpk1 From
Toxoplasma Gondii, Tgme49.101440
Length = 507
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Query: 289 LEAADIDEDGVVSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDL 344
L+A D D++G + +EF+ + +S+E + F+ D D SG +S ++L
Sbjct: 411 LDAVDFDKNGYIEYSEFVTVAMDRKTLLSRERLERA---FRMFDSDNSGKISSTEL 463
>pdb|3HX4|A Chain A, Crystal Structure Of Cdpk1 Of Toxoplasma Gondii,
Tgme49_101440, In Presence Of Calcium
Length = 508
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Query: 289 LEAADIDEDGVVSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDL 344
L+A D D++G + +EF+ + +S+E + F+ D D SG +S ++L
Sbjct: 412 LDAVDFDKNGYIEYSEFVTVAMDRKTLLSRERLERA---FRMFDSDNSGKISSTEL 464
>pdb|3I7C|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor Na-Pp2
pdb|3NYV|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Non-Specific Inhibitor
Whi-P180
Length = 484
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 289 LEAADIDEDGVVSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDL 344
L+A D D++G + +EF+ +S+E + F+ D D SG +S ++L
Sbjct: 388 LDAVDFDKNGYIEYSEFVTVAXDRKTLLSRERLERA---FRXFDSDNSGKISSTEL 440
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,547,298
Number of Sequences: 62578
Number of extensions: 363578
Number of successful extensions: 965
Number of sequences better than 100.0: 94
Number of HSP's better than 100.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 816
Number of HSP's gapped (non-prelim): 167
length of query: 354
length of database: 14,973,337
effective HSP length: 100
effective length of query: 254
effective length of database: 8,715,537
effective search space: 2213746398
effective search space used: 2213746398
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)