Query 047952
Match_columns 354
No_of_seqs 404 out of 2814
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 04:53:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047952.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047952hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4404 Tandem pore domain K+ 100.0 1.4E-30 3E-35 237.5 17.4 194 65-269 6-249 (350)
2 KOG1418 Tandem pore domain K+ 99.9 3.9E-25 8.4E-30 217.5 6.7 167 95-261 110-297 (433)
3 PF07885 Ion_trans_2: Ion chan 99.6 7.6E-16 1.6E-20 116.8 5.0 73 196-268 3-78 (79)
4 PF07885 Ion_trans_2: Ion chan 99.6 4.9E-15 1.1E-19 112.4 8.4 76 75-154 3-78 (79)
5 KOG3713 Voltage-gated K+ chann 99.5 4.5E-13 9.9E-18 129.9 19.3 83 194-277 351-440 (477)
6 KOG3713 Voltage-gated K+ chann 99.5 3.9E-14 8.4E-19 137.2 8.6 89 70-158 347-435 (477)
7 PRK10537 voltage-gated potassi 99.5 1.1E-13 2.4E-18 135.0 9.5 120 190-314 138-263 (393)
8 KOG1419 Voltage-gated K+ chann 99.4 1.3E-12 2.9E-17 127.2 9.5 115 155-270 200-325 (654)
9 KOG1419 Voltage-gated K+ chann 99.3 4.7E-12 1E-16 123.5 7.9 103 66-168 231-338 (654)
10 KOG1545 Voltage-gated shaker-l 99.2 2.3E-12 5E-17 119.9 2.6 78 192-269 365-448 (507)
11 KOG1545 Voltage-gated shaker-l 99.2 1.2E-12 2.6E-17 121.8 0.3 95 53-151 346-444 (507)
12 PLN03192 Voltage-dependent pot 99.2 3E-10 6.4E-15 121.7 16.7 57 215-271 251-307 (823)
13 KOG4404 Tandem pore domain K+ 99.2 3.6E-11 7.9E-16 110.8 8.0 76 72-154 165-248 (350)
14 PRK10537 voltage-gated potassi 99.2 8.3E-11 1.8E-15 114.9 11.0 82 77-159 146-227 (393)
15 PLN03192 Voltage-dependent pot 99.1 2.2E-10 4.8E-15 122.6 11.3 57 101-157 251-307 (823)
16 KOG4390 Voltage-gated A-type K 99.0 7.2E-11 1.6E-15 110.9 2.1 84 67-150 323-406 (632)
17 KOG1418 Tandem pore domain K+ 98.9 2E-09 4.3E-14 105.9 6.0 61 212-272 113-173 (433)
18 KOG1420 Ca2+-activated K+ chan 98.9 2E-09 4.3E-14 105.6 4.7 99 57-155 238-343 (1103)
19 KOG1420 Ca2+-activated K+ chan 98.8 2.9E-09 6.4E-14 104.5 5.5 82 188-269 249-343 (1103)
20 KOG4390 Voltage-gated A-type K 98.8 1.1E-09 2.4E-14 103.1 -0.7 71 199-269 334-411 (632)
21 KOG3684 Ca2+-activated K+ chan 98.7 1.5E-07 3.2E-12 90.8 12.9 83 189-271 254-344 (489)
22 KOG0498 K+-channel ERG and rel 98.6 1.9E-07 4.2E-12 96.6 10.2 57 100-156 294-350 (727)
23 KOG3684 Ca2+-activated K+ chan 98.6 2.6E-07 5.7E-12 89.2 9.9 90 66-156 253-343 (489)
24 KOG0498 K+-channel ERG and rel 98.6 5.7E-08 1.2E-12 100.5 4.9 54 216-269 296-349 (727)
25 KOG3193 K+ channel subunit [In 98.3 2.4E-06 5.2E-11 84.0 9.9 83 188-270 186-273 (1087)
26 PF01007 IRK: Inward rectifier 98.2 5.3E-06 1.2E-10 79.5 8.1 58 99-156 83-142 (336)
27 KOG0501 K+-channel KCNQ [Inorg 98.1 7.9E-06 1.7E-10 81.1 8.2 56 100-155 423-478 (971)
28 KOG0501 K+-channel KCNQ [Inorg 98.1 2.9E-05 6.3E-10 77.1 10.6 56 215-270 424-479 (971)
29 PF01007 IRK: Inward rectifier 97.9 1.6E-05 3.5E-10 76.2 5.8 57 213-269 83-141 (336)
30 KOG3193 K+ channel subunit [In 97.8 2.9E-05 6.2E-10 76.6 5.1 64 95-158 212-275 (1087)
31 TIGR00933 2a38 potassium uptak 97.5 0.0003 6.4E-09 69.3 8.5 173 75-252 204-389 (390)
32 PRK10750 potassium transporter 97.2 0.002 4.4E-08 65.0 9.4 182 68-253 274-466 (483)
33 KOG3827 Inward rectifier K+ ch 97.1 0.0015 3.3E-08 62.3 7.4 60 99-158 111-172 (400)
34 PRK05482 potassium-transportin 96.9 0.0088 1.9E-07 60.6 11.4 190 67-268 280-507 (559)
35 PF00520 Ion_trans: Ion transp 96.9 0.0024 5.2E-08 55.4 6.5 52 98-149 143-200 (200)
36 KOG0500 Cyclic nucleotide-gate 96.8 0.0056 1.2E-07 60.3 8.9 56 101-157 184-239 (536)
37 TIGR00933 2a38 potassium uptak 96.7 0.0057 1.2E-07 60.2 8.5 150 71-253 106-272 (390)
38 KOG0500 Cyclic nucleotide-gate 96.7 0.0099 2.2E-07 58.6 9.8 55 218-273 187-241 (536)
39 KOG3827 Inward rectifier K+ ch 96.6 0.011 2.4E-07 56.6 8.6 58 213-270 111-170 (400)
40 PRK10750 potassium transporter 96.5 0.018 3.9E-07 58.2 10.0 43 68-118 182-224 (483)
41 COG0168 TrkG Trk-type K+ trans 96.4 0.037 8E-07 56.2 11.7 153 100-253 301-471 (499)
42 PF02386 TrkH: Cation transpor 96.3 0.0095 2.1E-07 57.8 7.1 152 99-252 175-338 (354)
43 KOG0499 Cyclic nucleotide-gate 96.1 0.032 6.9E-07 56.3 9.4 80 75-155 370-457 (815)
44 KOG0499 Cyclic nucleotide-gate 96.0 0.018 3.8E-07 58.1 7.1 104 213-323 402-510 (815)
45 PF00520 Ion_trans: Ion transp 96.0 0.019 4.1E-07 49.6 6.8 50 213-262 144-199 (200)
46 TIGR00934 2a38euk potassium up 94.6 1.3 2.8E-05 47.0 15.5 64 191-255 586-662 (800)
47 PF00060 Lig_chan: Ligand-gate 94.1 0.035 7.7E-07 46.2 2.5 60 99-159 43-102 (148)
48 KOG0027 Calmodulin and related 94.1 0.068 1.5E-06 45.2 4.2 57 290-346 51-109 (151)
49 PF13499 EF-hand_7: EF-hand do 94.0 0.094 2E-06 37.4 4.3 56 290-345 7-63 (66)
50 PF13202 EF-hand_5: EF hand; P 93.8 0.036 7.8E-07 32.0 1.3 22 324-345 1-22 (25)
51 PF00060 Lig_chan: Ligand-gate 93.3 0.05 1.1E-06 45.3 2.0 57 213-270 43-99 (148)
52 PF00036 EF-hand_1: EF hand; 92.9 0.063 1.4E-06 32.2 1.4 23 324-346 2-24 (29)
53 PRK05702 flhB flagellar biosyn 92.0 3.8 8.1E-05 39.9 13.3 51 243-298 186-236 (359)
54 PF02386 TrkH: Cation transpor 92.0 0.12 2.7E-06 50.1 3.0 46 99-144 52-103 (354)
55 TIGR00934 2a38euk potassium up 91.3 0.36 7.9E-06 51.0 5.7 174 70-252 586-784 (800)
56 PF13405 EF-hand_6: EF-hand do 90.2 0.16 3.6E-06 30.6 1.3 23 324-346 2-24 (31)
57 KOG3676 Ca2+-permeable cation 90.1 15 0.00031 39.1 15.9 56 214-269 586-649 (782)
58 PRK12721 secretion system appa 89.2 6.3 0.00014 38.2 12.0 51 243-298 179-229 (349)
59 PRK13109 flhB flagellar biosyn 88.9 8.3 0.00018 37.5 12.6 50 244-298 189-238 (358)
60 KOG4440 NMDA selective glutama 88.8 1.1 2.3E-05 46.0 6.4 58 97-154 610-667 (993)
61 PRK09108 type III secretion sy 88.5 7.6 0.00017 37.7 12.0 51 243-298 181-231 (353)
62 COG0168 TrkG Trk-type K+ trans 88.0 2.6 5.6E-05 42.9 8.8 40 99-139 197-243 (499)
63 smart00027 EH Eps15 homology d 87.7 0.57 1.2E-05 36.3 3.1 31 316-346 4-34 (96)
64 PRK12468 flhB flagellar biosyn 87.1 11 0.00024 37.1 12.3 43 251-298 194-236 (386)
65 TIGR00328 flhB flagellar biosy 86.7 12 0.00027 36.2 12.3 51 243-298 179-229 (347)
66 KOG3676 Ca2+-permeable cation 86.2 5 0.00011 42.4 9.7 90 66-155 541-649 (782)
67 TIGR01404 FlhB_rel_III type II 85.6 12 0.00026 36.2 11.5 51 243-298 178-228 (342)
68 PRK06298 type III secretion sy 85.5 14 0.0003 36.0 11.9 43 251-298 188-230 (356)
69 KOG1052 Glutamate-gated kainat 85.1 2.2 4.7E-05 44.9 6.8 55 215-270 382-436 (656)
70 KOG1052 Glutamate-gated kainat 84.8 2.9 6.3E-05 44.0 7.6 57 98-155 379-435 (656)
71 PF13833 EF-hand_8: EF-hand do 84.8 1.5 3.2E-05 29.7 3.7 45 297-345 2-48 (54)
72 KOG0031 Myosin regulatory ligh 83.5 1 2.2E-05 38.1 2.7 32 316-347 26-57 (171)
73 KOG1053 Glutamate-gated NMDA-t 83.3 8.8 0.00019 41.2 9.9 57 98-158 607-667 (1258)
74 PF13499 EF-hand_7: EF-hand do 83.3 0.67 1.4E-05 32.8 1.4 24 323-346 1-24 (66)
75 PLN03223 Polycystin cation cha 82.8 33 0.00072 38.9 14.3 31 240-270 1394-1425(1634)
76 KOG0044 Ca2+ sensor (EF-Hand s 82.6 2.1 4.5E-05 37.9 4.5 57 290-346 107-171 (193)
77 cd05026 S-100Z S-100Z: S-100Z 81.8 4.5 9.8E-05 31.1 5.7 51 291-345 19-76 (93)
78 PTZ00183 centrin; Provisional 81.7 4.1 8.9E-05 33.8 6.0 54 290-346 97-150 (158)
79 PRK12772 bifunctional flagella 81.5 27 0.00059 36.6 12.9 46 248-298 447-492 (609)
80 PRK05482 potassium-transportin 81.1 6.3 0.00014 40.5 7.8 52 99-150 450-504 (559)
81 cd00052 EH Eps15 homology doma 80.1 5.2 0.00011 27.9 5.2 50 291-345 7-56 (67)
82 KOG0038 Ca2+-binding kinase in 80.0 4.1 8.8E-05 34.2 5.0 54 290-344 115-171 (189)
83 KOG0034 Ca2+/calmodulin-depend 79.8 4.4 9.5E-05 35.7 5.6 57 290-346 111-171 (187)
84 cd05029 S-100A6 S-100A6: S-100 79.5 6 0.00013 30.2 5.6 46 297-345 26-74 (88)
85 PTZ00183 centrin; Provisional 78.7 4.2 9E-05 33.7 5.0 51 292-345 62-113 (158)
86 PRK00523 hypothetical protein; 77.9 25 0.00054 25.8 9.5 64 247-328 4-68 (72)
87 KOG0028 Ca2+-binding protein ( 77.8 4.2 9.1E-05 34.7 4.5 51 294-346 80-130 (172)
88 PTZ00184 calmodulin; Provision 77.6 5.5 0.00012 32.5 5.4 48 293-344 94-142 (149)
89 KOG4440 NMDA selective glutama 77.6 2 4.3E-05 44.1 3.0 57 213-269 612-668 (993)
90 PLN02964 phosphatidylserine de 77.0 4.1 9E-05 42.7 5.3 52 291-346 187-239 (644)
91 cd05023 S-100A11 S-100A11: S-1 76.8 7.7 0.00017 29.7 5.5 51 292-345 19-75 (89)
92 PTZ00184 calmodulin; Provision 76.7 6.2 0.00013 32.2 5.4 53 291-345 55-107 (149)
93 cd00252 SPARC_EC SPARC_EC; ext 76.2 2.5 5.5E-05 34.2 2.8 27 319-345 45-71 (116)
94 KOG0036 Predicted mitochondria 76.1 4.2 9E-05 39.9 4.6 49 289-345 57-105 (463)
95 cd05027 S-100B S-100B: S-100B 75.2 9.1 0.0002 29.2 5.6 48 294-345 20-74 (88)
96 KOG1053 Glutamate-gated NMDA-t 74.6 13 0.00028 40.1 8.0 54 213-270 608-665 (1258)
97 cd05022 S-100A13 S-100A13: S-1 73.3 6.1 0.00013 30.3 4.1 47 295-344 21-69 (89)
98 COG5126 FRQ1 Ca2+-binding prot 73.1 7.9 0.00017 33.2 5.1 53 290-346 99-152 (160)
99 cd00213 S-100 S-100: S-100 dom 72.3 3.4 7.5E-05 31.1 2.6 29 318-346 4-34 (88)
100 PRK01844 hypothetical protein; 72.2 36 0.00078 25.0 9.4 64 247-328 3-67 (72)
101 cd00051 EFh EF-hand, calcium b 72.0 13 0.00028 24.5 5.3 51 291-345 8-59 (63)
102 cd00252 SPARC_EC SPARC_EC; ext 72.0 6.2 0.00013 31.9 4.1 47 290-343 55-101 (116)
103 KOG4223 Reticulocalbin, calume 70.9 3.2 6.9E-05 39.3 2.4 56 290-345 207-264 (325)
104 KOG0031 Myosin regulatory ligh 70.3 28 0.00061 29.6 7.6 24 323-346 102-125 (171)
105 KOG1054 Glutamate-gated AMPA-t 70.2 4.8 0.0001 41.2 3.6 55 99-154 594-648 (897)
106 PF07077 DUF1345: Protein of u 69.5 8.9 0.00019 33.5 4.8 52 96-147 128-179 (180)
107 TIGR00870 trp transient-recept 67.9 1.6E+02 0.0034 31.6 14.9 46 227-272 569-620 (743)
108 PRK12773 flhB flagellar biosyn 67.7 97 0.0021 32.4 12.3 50 244-298 478-527 (646)
109 PRK12309 transaldolase/EF-hand 66.3 13 0.00029 36.6 5.9 42 289-346 340-381 (391)
110 KOG1054 Glutamate-gated AMPA-t 65.2 2.8 6E-05 42.9 0.9 57 213-270 594-650 (897)
111 cd05027 S-100B S-100B: S-100B 63.4 7.2 0.00016 29.7 2.7 29 318-346 4-34 (88)
112 COG4792 EscU Type III secretor 63.3 61 0.0013 30.7 9.1 67 222-298 164-232 (349)
113 cd05022 S-100A13 S-100A13: S-1 63.2 7.3 0.00016 29.9 2.7 29 318-346 4-33 (89)
114 cd05025 S-100A1 S-100A1: S-100 63.1 7.1 0.00015 29.8 2.7 30 318-347 5-36 (92)
115 KOG4223 Reticulocalbin, calume 61.2 11 0.00025 35.7 4.1 54 290-347 170-225 (325)
116 cd00052 EH Eps15 homology doma 60.7 4.9 0.00011 28.1 1.3 22 325-346 2-23 (67)
117 cd05031 S-100A10_like S-100A10 60.6 23 0.00049 27.0 5.2 47 295-345 21-74 (94)
118 smart00054 EFh EF-hand, calciu 59.9 6.1 0.00013 21.5 1.4 22 325-346 3-24 (29)
119 PRK10929 putative mechanosensi 59.0 2.6E+02 0.0055 31.7 14.5 32 213-245 807-838 (1109)
120 cd05025 S-100A1 S-100A1: S-100 58.4 21 0.00045 27.1 4.6 50 293-345 20-75 (92)
121 cd05031 S-100A10_like S-100A10 57.7 9.5 0.00021 29.2 2.5 28 319-346 5-34 (94)
122 KOG0037 Ca2+-binding protein, 56.9 20 0.00043 32.2 4.7 47 293-348 104-150 (221)
123 COG5126 FRQ1 Ca2+-binding prot 56.6 15 0.00032 31.5 3.7 49 296-346 68-116 (160)
124 PF01595 DUF21: Domain of unkn 56.1 75 0.0016 27.0 8.3 25 215-239 86-110 (183)
125 KOG0044 Ca2+ sensor (EF-Hand s 53.5 20 0.00044 31.7 4.2 52 291-345 72-123 (193)
126 smart00027 EH Eps15 homology d 52.7 43 0.00093 25.5 5.6 50 291-345 18-67 (96)
127 cd00213 S-100 S-100: S-100 dom 51.8 37 0.00081 25.3 5.0 52 291-345 16-74 (88)
128 cd05026 S-100Z S-100Z: S-100Z 50.8 14 0.00031 28.3 2.5 29 318-346 6-36 (93)
129 KOG0027 Calmodulin and related 50.7 35 0.00076 28.5 5.1 52 290-344 92-143 (151)
130 cd05030 calgranulins Calgranul 50.1 35 0.00076 25.8 4.6 47 296-345 23-74 (88)
131 COG4325 Predicted membrane pro 49.8 1.6E+02 0.0035 29.0 9.8 33 230-264 153-185 (464)
132 COG3817 Predicted membrane pro 47.8 61 0.0013 29.9 6.3 28 97-125 29-56 (313)
133 KOG2302 T-type voltage-gated C 47.7 3.9E+02 0.0084 30.0 12.9 34 243-276 1364-1397(1956)
134 PRK08156 type III secretion sy 47.7 1.2E+02 0.0026 29.6 8.8 47 247-298 178-224 (361)
135 COG1615 Uncharacterized conser 47.1 1.4E+02 0.0031 31.8 9.5 34 110-143 220-253 (885)
136 PF10591 SPARC_Ca_bdg: Secrete 45.7 11 0.00023 30.3 1.1 31 316-346 48-78 (113)
137 KOG4065 Uncharacterized conser 45.3 58 0.0012 26.4 5.1 57 292-348 76-143 (144)
138 TIGR00870 trp transient-recept 42.7 1.5E+02 0.0033 31.6 9.7 41 114-154 570-616 (743)
139 COG3462 Predicted membrane pro 41.9 1.8E+02 0.0039 23.2 11.6 35 295-329 82-116 (117)
140 KOG3599 Ca2+-modulated nonsele 40.8 5.2E+02 0.011 28.2 17.5 59 192-250 596-657 (798)
141 PF14658 EF-hand_9: EF-hand do 40.0 58 0.0013 23.5 4.0 51 291-345 6-59 (66)
142 PF07077 DUF1345: Protein of u 39.4 8.8 0.00019 33.6 -0.3 48 213-260 131-178 (180)
143 cd05023 S-100A11 S-100A11: S-1 38.8 32 0.00069 26.2 2.8 29 318-346 5-35 (89)
144 PF01312 Bac_export_2: FlhB Hr 38.7 7.7 0.00017 37.6 -0.9 42 252-298 190-231 (343)
145 KOG0034 Ca2+/calmodulin-depend 38.6 47 0.001 29.2 4.1 32 315-346 26-58 (187)
146 cd05024 S-100A10 S-100A10: A s 37.8 38 0.00082 26.2 3.0 25 317-344 46-70 (91)
147 PF03699 UPF0182: Uncharacteri 34.8 6.3E+02 0.014 27.5 12.5 16 330-345 331-346 (774)
148 PLN02964 phosphatidylserine de 34.6 69 0.0015 33.8 5.2 51 290-345 150-202 (644)
149 COG1377 FlhB Flagellar biosynt 33.8 4.6E+02 0.01 25.6 15.5 30 261-295 204-233 (363)
150 PLN03223 Polycystin cation cha 33.8 1.6E+02 0.0034 33.9 7.9 57 97-155 1358-1424(1634)
151 PF08016 PKD_channel: Polycyst 33.7 3.7E+02 0.008 26.5 10.2 21 215-235 363-383 (425)
152 COG1253 TlyC Hemolysins and re 33.5 4.9E+02 0.011 25.8 13.9 19 221-239 101-119 (429)
153 PF12763 EF-hand_4: Cytoskelet 33.4 20 0.00043 28.3 0.9 19 328-346 49-67 (104)
154 PRK12438 hypothetical protein; 33.1 7.4E+02 0.016 27.7 15.0 32 225-256 244-275 (991)
155 COG2060 KdpA K+-transporting A 32.7 5.6E+02 0.012 26.3 13.8 152 102-268 334-510 (560)
156 PF00404 Dockerin_1: Dockerin 32.6 29 0.00064 19.1 1.2 15 332-346 1-15 (21)
157 PF06781 UPF0233: Uncharacteri 31.5 1.9E+02 0.0041 22.1 5.8 24 68-91 33-56 (87)
158 cd05029 S-100A6 S-100A6: S-100 31.3 44 0.00095 25.4 2.4 28 318-345 6-35 (88)
159 PF08016 PKD_channel: Polycyst 30.6 2.5E+02 0.0053 27.8 8.3 15 97-111 363-377 (425)
160 COG1226 Kch Kef-type K+ transp 30.1 33 0.00071 29.0 1.8 47 99-145 116-162 (212)
161 COG1226 Kch Kef-type K+ transp 29.6 20 0.00043 30.5 0.3 43 213-255 116-158 (212)
162 PF06166 DUF979: Protein of un 29.6 1.6E+02 0.0035 27.9 6.2 43 226-268 177-225 (308)
163 KOG4251 Calcium binding protei 29.4 43 0.00094 30.7 2.4 33 288-320 145-177 (362)
164 PF12763 EF-hand_4: Cytoskelet 29.3 80 0.0017 24.9 3.7 20 290-309 50-69 (104)
165 PF10011 DUF2254: Predicted me 28.4 3.2E+02 0.007 26.6 8.6 54 100-153 100-153 (371)
166 KOG3491 Predicted membrane pro 28.2 1.2E+02 0.0026 21.3 3.8 29 183-211 31-59 (65)
167 PF11947 DUF3464: Protein of u 28.0 3.8E+02 0.0082 22.8 9.2 23 128-150 98-120 (153)
168 PRK12438 hypothetical protein; 26.9 2.9E+02 0.0062 30.8 8.4 30 112-141 245-274 (991)
169 PF14788 EF-hand_10: EF hand; 26.8 83 0.0018 21.5 2.9 21 325-345 24-44 (51)
170 COG3763 Uncharacterized protei 25.5 2.7E+02 0.0059 20.3 9.1 26 304-329 42-68 (71)
171 KOG2562 Protein phosphatase 2 24.3 69 0.0015 32.1 2.9 49 294-345 326-374 (493)
172 PRK00159 putative septation in 23.6 3.4E+02 0.0074 20.8 6.6 25 68-92 33-57 (87)
173 PRK00068 hypothetical protein; 23.5 3.7E+02 0.008 29.9 8.5 28 112-139 245-272 (970)
174 PF10710 DUF2512: Protein of u 23.1 4E+02 0.0088 22.1 7.0 31 207-238 22-56 (136)
175 KOG0377 Protein serine/threoni 21.5 1.2E+02 0.0027 30.3 4.0 56 289-347 553-612 (631)
176 PF06624 RAMP4: Ribosome assoc 21.1 56 0.0012 23.4 1.3 26 185-210 33-58 (63)
177 KOG2302 T-type voltage-gated C 20.8 1.3E+03 0.027 26.3 15.2 29 62-90 1255-1283(1956)
178 PF12273 RCR: Chitin synthesis 20.7 97 0.0021 25.3 2.8 13 250-262 4-16 (130)
179 KOG0036 Predicted mitochondria 20.5 1.7E+02 0.0037 29.1 4.7 50 290-343 89-139 (463)
No 1
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=99.97 E-value=1.4e-30 Score=237.46 Aligned_cols=194 Identities=20% Similarity=0.281 Sum_probs=155.5
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHhhhcc---------------------------------------cCCCcCCchhhh
Q 047952 65 RPNFKRVLVYLAAYLGGGSLSFYAVNSQI---------------------------------------EGLKTNEILDSI 105 (354)
Q Consensus 65 ~~~~~~~~~~l~~~l~~g~~~~~~~e~~~---------------------------------------~~~~~~~~~~a~ 105 (354)
......+++..+.|+++|+.+|-..|.+. ....-|+|..||
T Consensus 6 nvR~l~Livct~tYLLvGAaVFdaLEse~E~~~r~~l~~~~~~~~~kyn~s~~d~r~~er~i~~s~ph~ag~qWkF~GaF 85 (350)
T KOG4404|consen 6 NVRTLLLIVCTFTYLLVGAAVFDALESENEARERERLERRLANLKRKYNLSEEDYRELERVILKSEPHKAGPQWKFAGAF 85 (350)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCccccccccccCcce
Confidence 44556677888899999999998887432 112239999999
Q ss_pred hhhhhhhcccccCccccCCccchhHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHhhc---cccCCccchhhhhh
Q 047952 106 YFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGMFLSKAADYLVDKQEILLVKALHRY---QKVGPTDILKEIET 182 (354)
Q Consensus 106 yf~~~t~tTvGyGdi~P~t~~~r~~~~~~~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 182 (354)
||+.+.+||||||...|.|..||+||++|+++|+++..++++.+++.+..-... ++++.++. +...+
T Consensus 86 YFa~TVItTIGyGhstP~T~~GK~Fcm~Yal~Gipl~lvmFqs~gERlnt~~ay-il~~~r~~~~~r~~~~--------- 155 (350)
T KOG4404|consen 86 YFATTVITTIGYGHSTPSTDGGKAFCMFYALVGIPLTLVMFQSIGERLNTFVAY-ILRRCRRRLGRRRWDV--------- 155 (350)
T ss_pred EEEEEEEeeeccCCCCCCCcCceehhhhHHHhcCchHHHHHHHHHHHHHHHHHH-HHHHHHHHhccccCCC---------
Confidence 999999999999999999999999999999999999999999999988654433 33333332 11111
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCccccceeeeeeecccccCCcccCC--------cCchHHHHHHHHHHHH
Q 047952 183 NKVRYKCIIMLVLELVLILVGTIFLVVVEKMSFVDAFYCVCSTITTLGYGDKSFST--------TGGRAFGVVWISSSTM 254 (354)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~da~yf~~vT~tTVGyGD~~p~t--------~~gr~~~~~~i~~g~~ 254 (354)
....-+++.+...+++++.|+.+|+..|+|+|+||+||||||+|||||||.++.. +.++.+..++|++|+.
T Consensus 156 -S~~~l~~i~~~~~~~~i~~gaa~fs~~E~Wsyfds~YyCFITltTIGFGDyValQ~~~alq~qplYv~~sf~fIL~Gl~ 234 (350)
T KOG4404|consen 156 -SVYNLVLILFTACILLICCGAAMFSSVEGWSYFDSYYYCFITLTTIGFGDYVALQQDAALQSQPLYVFFSFVFILLGLC 234 (350)
T ss_pred -cHHHHHHHHHHHHHHHHHhhHHHhhcccCcchhhhhheeeeeeeeccccchhhhcchhhhhCCCceehHhHHHHHHHHH
Confidence 1112334455666778999999999999999999999999999999999999864 3678999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 047952 255 TLAQFFLYVAEFNTE 269 (354)
Q Consensus 255 ~~~~~~~~i~~~~~~ 269 (354)
+++.+++.++-.+..
T Consensus 235 vi~a~~NllvLrf~t 249 (350)
T KOG4404|consen 235 VIYALLNLLVLRFMT 249 (350)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999988766554
No 2
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism]
Probab=99.91 E-value=3.9e-25 Score=217.52 Aligned_cols=167 Identities=25% Similarity=0.465 Sum_probs=132.4
Q ss_pred CCCcCCchhhhhhhhhhhcccccCccccCCccchhHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHH------HHhhc
Q 047952 95 GLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGMFLSKAADYLVDKQEILLVK------ALHRY 168 (354)
Q Consensus 95 ~~~~~~~~~a~yf~~~t~tTvGyGdi~P~t~~~r~~~~~~~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~ 168 (354)
....|+|.+|+||+++++||||||+++|.|..||+++++|+++|++++.++++.+++++.+.......+ ....+
T Consensus 110 ~~~~W~f~~al~fs~tv~TTIGYG~i~P~T~~Gr~~~i~YaliGIPl~li~l~~~g~~l~~~~~~~~~~~~~~~~~~~~~ 189 (433)
T KOG1418|consen 110 DTQQWSFSSALLFSITVITTIGYGNIAPRTDAGRLFTILYALVGIPLMLLILADIGKFLADSLRKLYRRRHVELQRDRIR 189 (433)
T ss_pred CCcceecchhHhhhhheeeeccCCcccCCcCcchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Confidence 344599999999999999999999999999999999999999999999999999999998766654421 11111
Q ss_pred cccCC--ccchh--hhhhhh---hhhhHHHHHHHHHHHHHHHHHHHHHHhcCCccccceeeeeeecccccCCcccCCcCc
Q 047952 169 QKVGP--TDILK--EIETNK---VRYKCIIMLVLELVLILVGTIFLVVVEKMSFVDAFYCVCSTITTLGYGDKSFSTTGG 241 (354)
Q Consensus 169 ~~~~~--~~~~~--~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~da~yf~~vT~tTVGyGD~~p~t~~g 241 (354)
..... ..... +..... .+.++...+.++++++..|+.++...|+|+|++|+||+++|+|||||||++|.+..+
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~w~f~~~~Yf~fisltTIG~GD~vp~~~~~ 269 (433)
T KOG1418|consen 190 SNLRRSIGLRNRSVELGIELLDELRFILLLLLGISLVYLSPGSLLFSLQEQWSFIEAFYFSFISLTTIGFGDIVPRTLLG 269 (433)
T ss_pred hhhhccccchhcccccchhhccCcceehhhhheeeEEEecccceeeeceeceeeEeeeeEEEEEeeeecCCccccCCCcc
Confidence 11110 00000 111111 255666777777788899999999999999999999999999999999999999886
Q ss_pred h--------HHHHHHHHHHHHHHHHHHH
Q 047952 242 R--------AFGVVWISSSTMTLAQFFL 261 (354)
Q Consensus 242 r--------~~~~~~i~~g~~~~~~~~~ 261 (354)
+ .+..+++++|...++....
T Consensus 270 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 297 (433)
T KOG1418|consen 270 RFRREELVDPLASVWILSGLALLALVLL 297 (433)
T ss_pred eeeccccccchhHHHHHhhhhHHHHHhh
Confidence 6 6899999999999998884
No 3
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria []. ; PDB: 1KKD_A 2A0L_A 1ORQ_C 3UKM_C 1LNQ_E 3OUS_A 3LDC_A 3LDD_A 3RBZ_A 3LDE_A ....
Probab=99.60 E-value=7.6e-16 Score=116.81 Aligned_cols=73 Identities=37% Similarity=0.605 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHH---HhcCCccccceeeeeeecccccCCcccCCcCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047952 196 ELVLILVGTIFLVV---VEKMSFVDAFYCVCSTITTLGYGDKSFSTTGGRAFGVVWISSSTMTLAQFFLYVAEFNT 268 (354)
Q Consensus 196 ~~~~~~~~~~~~~~---~e~~~~~da~yf~~vT~tTVGyGD~~p~t~~gr~~~~~~i~~g~~~~~~~~~~i~~~~~ 268 (354)
++.+++.++..++. .|+|++.|++||+++|+|||||||++|.++.||++++++++.|+.+++++++.+++.++
T Consensus 3 ~~~~l~~~~~~~~~~~~~~~~~~~da~yfs~~t~tTvGyGDi~p~t~~gr~~~~~~~~~G~~~~~~~~~~~~~~l~ 78 (79)
T PF07885_consen 3 LLLVLAFGAIFFYISEGSEKWSFIDALYFSFVTITTVGYGDIVPQTPAGRIFTIIYMLIGIFLFALFLSVLASVLT 78 (79)
T ss_dssp HHHHHHHHHHHHHHTTSSSTTSHHHHHHHHHHHHTT---SSSSTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEeeeHHHHHHHHHHHhcccCCHHHHHHHHHHHHhcccCCCccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44556677777777 56799999999999999999999999999999999999999999999999999998775
No 4
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria []. ; PDB: 1KKD_A 2A0L_A 1ORQ_C 3UKM_C 1LNQ_E 3OUS_A 3LDC_A 3LDD_A 3RBZ_A 3LDE_A ....
Probab=99.59 E-value=4.9e-15 Score=112.36 Aligned_cols=76 Identities=36% Similarity=0.672 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHHhhhcccCCCcCCchhhhhhhhhhhcccccCccccCCccchhHHHHHHHHhHHHHHHhHHHHHHHHH
Q 047952 75 LAAYLGGGSLSFYAVNSQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGMFLSKAADYLV 154 (354)
Q Consensus 75 l~~~l~~g~~~~~~~e~~~~~~~~~~~~~a~yf~~~t~tTvGyGdi~P~t~~~r~~~~~~~l~Gi~~~~~~~~~~~~~~~ 154 (354)
++++++.|+..++. ++ +.+.|++.||+||+++|+||+||||++|.++.||++++++++.|++++++.++.+++.+.
T Consensus 3 ~~~~l~~~~~~~~~-~~---~~~~~~~~da~yfs~~t~tTvGyGDi~p~t~~gr~~~~~~~~~G~~~~~~~~~~~~~~l~ 78 (79)
T PF07885_consen 3 LLLVLAFGAIFFYI-SE---GSEKWSFIDALYFSFVTITTVGYGDIVPQTPAGRIFTIIYMLIGIFLFALFLSVLASVLT 78 (79)
T ss_dssp HHHHHHHHHHHHHH-TT---SSSTTSHHHHHHHHHHHHTT---SSSSTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEeeeHHHHHHHHH-HH---hcccCCHHHHHHHHHHHHhcccCCCccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44555666666655 21 233499999999999999999999999999999999999999999999999999988774
No 5
>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism]
Probab=99.54 E-value=4.5e-13 Score=129.87 Aligned_cols=83 Identities=22% Similarity=0.277 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHHHHHhc-------CCccccceeeeeeecccccCCcccCCcCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 047952 194 VLELVLILVGTIFLVVVEK-------MSFVDAFYCVCSTITTLGYGDKSFSTTGGRAFGVVWISSSTMTLAQFFLYVAEF 266 (354)
Q Consensus 194 ~~~~~~~~~~~~~~~~~e~-------~~~~da~yf~~vT~tTVGyGD~~p~t~~gr~~~~~~i~~g~~~~~~~~~~i~~~ 266 (354)
++.+.+.++++++| +.|+ .|..-++||+++|||||||||++|.|..||+++...++.|+.++|+.+..+.+.
T Consensus 351 fL~~GI~iFStlvY-~~Ek~~~~~~FtSIPa~~WWaiVTMTTVGYGDm~P~T~~Gklvas~cil~GVLvlAlPItiIv~n 429 (477)
T KOG3713|consen 351 FLAVGIVIFSTLVY-FAEKDEPDTKFTSIPAGFWWAVVTMTTVGYGDMVPVTVLGKLVASLCILCGVLVLALPITIIVNN 429 (477)
T ss_pred HHHHHHHHHHHHHH-HhhhcCCCCCCccccchhheeeEEEeeecccCccccccchHHHHHHHHHHhHHHhhcchHhHhhh
Confidence 33344444444444 5554 567789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 047952 267 NTEKRQKALVN 277 (354)
Q Consensus 267 ~~~~~~~~~~~ 277 (354)
|...+++...+
T Consensus 430 F~~~y~~~k~~ 440 (477)
T KOG3713|consen 430 FSMYYSELKAR 440 (477)
T ss_pred HHHHHHHHHHH
Confidence 99866554443
No 6
>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism]
Probab=99.51 E-value=3.9e-14 Score=137.23 Aligned_cols=89 Identities=26% Similarity=0.376 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccCCCcCCchhhhhhhhhhhcccccCccccCCccchhHHHHHHHHhHHHHHHhHHHH
Q 047952 70 RVLVYLAAYLGGGSLSFYAVNSQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGMFLSKA 149 (354)
Q Consensus 70 ~~~~~l~~~l~~g~~~~~~~e~~~~~~~~~~~~~a~yf~~~t~tTvGyGdi~P~t~~~r~~~~~~~l~Gi~~~~~~~~~~ 149 (354)
.+++++.+-+++.+...|+.|++.+..++.|...++||+++|||||||||++|.|..||+++...++.|+.++++-+..|
T Consensus 347 lLllfL~~GI~iFStlvY~~Ek~~~~~~FtSIPa~~WWaiVTMTTVGYGDm~P~T~~Gklvas~cil~GVLvlAlPItiI 426 (477)
T KOG3713|consen 347 LLLLFLAVGIVIFSTLVYFAEKDEPDTKFTSIPAGFWWAVVTMTTVGYGDMVPVTVLGKLVASLCILCGVLVLALPITII 426 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCCCCccccchhheeeEEEeeecccCccccccchHHHHHHHHHHhHHHhhcchHhH
Confidence 33333333344445555778887777779999999999999999999999999999999999999999999999988888
Q ss_pred HHHHHHHHH
Q 047952 150 ADYLVDKQE 158 (354)
Q Consensus 150 ~~~~~~~~~ 158 (354)
.+-+.+...
T Consensus 427 v~nF~~~y~ 435 (477)
T KOG3713|consen 427 VNNFSMYYS 435 (477)
T ss_pred hhhHHHHHH
Confidence 777765433
No 7
>PRK10537 voltage-gated potassium channel; Provisional
Probab=99.48 E-value=1.1e-13 Score=134.99 Aligned_cols=120 Identities=18% Similarity=0.179 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc------CCccccceeeeeeecccccCCcccCCcCchHHHHHHHHHHHHHHHHHHHHH
Q 047952 190 IIMLVLELVLILVGTIFLVVVEK------MSFVDAFYCVCSTITTLGYGDKSFSTTGGRAFGVVWISSSTMTLAQFFLYV 263 (354)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~e~------~~~~da~yf~~vT~tTVGyGD~~p~t~~gr~~~~~~i~~g~~~~~~~~~~i 263 (354)
...+..+..+++.+.+++++.|+ +++.||+||+++|+|||||||++|.+..||+|++++++.|++++++.++.+
T Consensus 138 l~~~~~~~~l~~~~~~g~~~~~~~f~~~~~s~~dA~y~svvt~tTvGyGdi~p~t~~grl~~i~~ii~Gi~vf~~~is~i 217 (393)
T PRK10537 138 LFAVISITSLLFYSTFGALYLGDGFSPPIESLSTAFYFSIVTMSTVGYGDIVPVSESARLFTISVIILGITVFATSISAI 217 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccccCcCCCCHHHHHHhhheeeecccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445556667776666664 799999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHhccccccchhhhcccCCCccchHHHHHHHHHHcC
Q 047952 264 AEFNTEKRQKALVNWVLTRKMTHVDLEAADIDEDGVVSAAEFIIYKLKEMG 314 (354)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~r~~~~~~l~~~~l~~~g~v~~~e~v~~~l~~~~ 314 (354)
...+.+++.++..+....+.+.+ ..--+.|.|++++ .+...|.+.+
T Consensus 218 ~~p~i~~~l~~~~~~~~~~~~~k---~HvII~G~g~lg~--~v~~~L~~~g 263 (393)
T PRK10537 218 FGPVIRGNLKRLVKGRISHMHRK---DHFIICGHSPLAI--NTYLGLRQRG 263 (393)
T ss_pred HHHHHHHHHHHHHHhhhhhcccC---CeEEEECCChHHH--HHHHHHHHCC
Confidence 88777655433322111111111 1122457777766 6778887766
No 8
>KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism]
Probab=99.38 E-value=1.3e-12 Score=127.23 Aligned_cols=115 Identities=18% Similarity=0.232 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHhhccccCCccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhc-----------CCccccceeee
Q 047952 155 DKQEILLVKALHRYQKVGPTDILKEIETNKVRYKCIIMLVLELVLILVGTIFLVVVEK-----------MSFVDAFYCVC 223 (354)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~-----------~~~~da~yf~~ 223 (354)
..+..+++|.+++.|..+..+++.++--.. +..++.++.+-++.+++.+++.+..|. -+|.||+||.+
T Consensus 200 slRFlQILRmlr~DRrggTWKLLGSvV~aH-~~ELiTt~YIGFL~LIfsSflVYLaEKd~~~e~~n~~F~TyADALWWG~ 278 (654)
T KOG1419|consen 200 SLRFLQILRMLRMDRRGGTWKLLGSVVYAH-SKELITTWYIGFLVLIFSSFLVYLAEKDAQGEGTNDEFPTYADALWWGV 278 (654)
T ss_pred hhHHHHHHHHHHhhccCchhhhhhhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccchhHHHHHHhhh
Confidence 334456788888887777777766552111 112222222222333345555556664 57999999999
Q ss_pred eeecccccCCcccCCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047952 224 STITTLGYGDKSFSTTGGRAFGVVWISSSTMTLAQFFLYVAEFNTEK 270 (354)
Q Consensus 224 vT~tTVGyGD~~p~t~~gr~~~~~~i~~g~~~~~~~~~~i~~~~~~~ 270 (354)
+|+|||||||.+|.|+.||+++..+.++|+.++++.-+.+.+-|.-+
T Consensus 279 ITltTIGYGDk~P~TWlGr~laa~fsligiSFFALPAGILGSGfALK 325 (654)
T KOG1419|consen 279 ITLTTIGYGDKTPQTWLGRLLAACFSLIGISFFALPAGILGSGFALK 325 (654)
T ss_pred eeEEeeccCCcCcccchhHHHHHHHHHHHHHHHhcccccccchhhhh
Confidence 99999999999999999999999999999999999999998877653
No 9
>KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism]
Probab=99.30 E-value=4.7e-12 Score=123.53 Aligned_cols=103 Identities=19% Similarity=0.276 Sum_probs=79.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhhcc----cCCCcCCchhhhhhhhhhhcccccCccccCCccchhHHHHHHHHhHHH
Q 047952 66 PNFKRVLVYLAAYLGGGSLSFYAVNSQI----EGLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGL 141 (354)
Q Consensus 66 ~~~~~~~~~l~~~l~~g~~~~~~~e~~~----~~~~~~~~~~a~yf~~~t~tTvGyGdi~P~t~~~r~~~~~~~l~Gi~~ 141 (354)
..+.....+-++.+++.+.+.|+.|.+. .+.++.+|.||+||..+|+|||||||.+|.|+.||+++..+.++|+.+
T Consensus 231 ~ELiTt~YIGFL~LIfsSflVYLaEKd~~~e~~n~~F~TyADALWWG~ITltTIGYGDk~P~TWlGr~laa~fsligiSF 310 (654)
T KOG1419|consen 231 KELITTWYIGFLVLIFSSFLVYLAEKDAQGEGTNDEFPTYADALWWGVITLTTIGYGDKTPQTWLGRLLAACFSLIGISF 310 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccchhHHHHHHhhheeEEeeccCCcCcccchhHHHHHHHHHHHHHH
Confidence 3445555566666777788888888653 234678999999999999999999999999999999999999999999
Q ss_pred HHHhHHHHHHHHH-HHHHHHHHHHHhhc
Q 047952 142 VGMFLSKAADYLV-DKQEILLVKALHRY 168 (354)
Q Consensus 142 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 168 (354)
|++..+.+++-+. +.+++...+..+++
T Consensus 311 FALPAGILGSGfALKVQeq~RQKHf~rr 338 (654)
T KOG1419|consen 311 FALPAGILGSGFALKVQEQHRQKHFNRR 338 (654)
T ss_pred HhcccccccchhhhhhHHHHHHHHHHhh
Confidence 9999888887553 23333333444333
No 10
>KOG1545 consensus Voltage-gated shaker-like K+ channel KCNA [Inorganic ion transport and metabolism]
Probab=99.25 E-value=2.3e-12 Score=119.86 Aligned_cols=78 Identities=26% Similarity=0.345 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhc------CCccccceeeeeeecccccCCcccCCcCchHHHHHHHHHHHHHHHHHHHHHHH
Q 047952 192 MLVLELVLILVGTIFLVVVEK------MSFVDAFYCVCSTITTLGYGDKSFSTTGGRAFGVVWISSSTMTLAQFFLYVAE 265 (354)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~e~------~~~~da~yf~~vT~tTVGyGD~~p~t~~gr~~~~~~i~~g~~~~~~~~~~i~~ 265 (354)
++++++.++++++.+|....+ .+..|||||+++|||||||||.+|.|..||+...++.+.|+..+++.+..+++
T Consensus 365 IFFlfIgviLFsSavYFAEade~~S~F~SIPdaFWwavVTMTTVGYGDm~P~TvgGKIVGslCAiaGVLTiALPVPVIVs 444 (507)
T KOG1545|consen 365 IFFLFIGVILFSSAVYFAEADEPESHFSSIPDAFWWAVVTMTTVGYGDMVPVTVGGKIVGSLCAIAGVLTIALPVPVIVS 444 (507)
T ss_pred HHHHHHHHHHHhceeeeeecCCCccCCCcCcccceEEEEEEEeeccccceecccCceehhhHHhhhhheEecccccEEEe
Confidence 344444444444444432211 67899999999999999999999999999999999999999999999998887
Q ss_pred HHHH
Q 047952 266 FNTE 269 (354)
Q Consensus 266 ~~~~ 269 (354)
-+.-
T Consensus 445 NFny 448 (507)
T KOG1545|consen 445 NFNY 448 (507)
T ss_pred cccc
Confidence 6653
No 11
>KOG1545 consensus Voltage-gated shaker-like K+ channel KCNA [Inorganic ion transport and metabolism]
Probab=99.24 E-value=1.2e-12 Score=121.79 Aligned_cols=95 Identities=23% Similarity=0.389 Sum_probs=70.2
Q ss_pred ChhhhHHhhcCCcchHHHHHHHHHHHHHHHHHH----HHHhhhcccCCCcCCchhhhhhhhhhhcccccCccccCCccch
Q 047952 53 STHLSESLFGKPRPNFKRVLVYLAAYLGGGSLS----FYAVNSQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSK 128 (354)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~----~~~~e~~~~~~~~~~~~~a~yf~~~t~tTvGyGdi~P~t~~~r 128 (354)
.++.+.+-+ +.+++-+.+ +++++.+|.+. .|+.|.+.....+.+..|||||+++|||||||||.+|.|+.||
T Consensus 346 GLQILGqTl---~aSmrElgL-LIFFlfIgviLFsSavYFAEade~~S~F~SIPdaFWwavVTMTTVGYGDm~P~TvgGK 421 (507)
T KOG1545|consen 346 GLQILGQTL---RASMRELGL-LIFFLFIGVILFSSAVYFAEADEPESHFSSIPDAFWWAVVTMTTVGYGDMVPVTVGGK 421 (507)
T ss_pred hHHHHHHHH---HHHHHHHHH-HHHHHHHHHHHHhceeeeeecCCCccCCCcCcccceEEEEEEEeeccccceecccCce
Confidence 445555544 444443332 22333344443 3677776677788999999999999999999999999999999
Q ss_pred hHHHHHHHHhHHHHHHhHHHHHH
Q 047952 129 LLSCAFVFTGMGLVGMFLSKAAD 151 (354)
Q Consensus 129 ~~~~~~~l~Gi~~~~~~~~~~~~ 151 (354)
++..+.++.|+..+++-+..+.+
T Consensus 422 IVGslCAiaGVLTiALPVPVIVs 444 (507)
T KOG1545|consen 422 IVGSLCAIAGVLTIALPVPVIVS 444 (507)
T ss_pred ehhhHHhhhhheEecccccEEEe
Confidence 99999999999998887665554
No 12
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=99.21 E-value=3e-10 Score=121.67 Aligned_cols=57 Identities=23% Similarity=0.290 Sum_probs=52.8
Q ss_pred ccccceeeeeeecccccCCcccCCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047952 215 FVDAFYCVCSTITTLGYGDKSFSTTGGRAFGVVWISSSTMTLAQFFLYVAEFNTEKR 271 (354)
Q Consensus 215 ~~da~yf~~vT~tTVGyGD~~p~t~~gr~~~~~~i~~g~~~~~~~~~~i~~~~~~~~ 271 (354)
|..|+||+++|+|||||||++|.+..+++|+++++++|++++++.++.+++.+.+..
T Consensus 251 Yi~slYwai~TmtTVGYGDi~p~t~~E~i~~i~~ml~g~~~~a~~ig~i~~li~~~~ 307 (823)
T PLN03192 251 YISAIYWSITTMTTVGYGDLHAVNTIEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGT 307 (823)
T ss_pred HHHHHHHHHHHHhhccCCCcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334799999999999999999999999999999999999999999999999887644
No 13
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=99.20 E-value=3.6e-11 Score=110.75 Aligned_cols=76 Identities=24% Similarity=0.452 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccCCCcCCchhhhhhhhhhhcccccCccccC--------CccchhHHHHHHHHhHHHHH
Q 047952 72 LVYLAAYLGGGSLSFYAVNSQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPN--------SVVSKLLSCAFVFTGMGLVG 143 (354)
Q Consensus 72 ~~~l~~~l~~g~~~~~~~e~~~~~~~~~~~~~a~yf~~~t~tTvGyGdi~P~--------t~~~r~~~~~~~l~Gi~~~~ 143 (354)
....++.++.|+.+|.-.|+ |+|+||+||||+|+|||||||.++. .+..+.+..+|+++|+.+++
T Consensus 165 ~~~~~~~i~~gaa~fs~~E~-------Wsyfds~YyCFITltTIGFGDyValQ~~~alq~qplYv~~sf~fIL~Gl~vi~ 237 (350)
T KOG4404|consen 165 FTACILLICCGAAMFSSVEG-------WSYFDSYYYCFITLTTIGFGDYVALQQDAALQSQPLYVFFSFVFILLGLCVIY 237 (350)
T ss_pred HHHHHHHHHhhHHHhhcccC-------cchhhhhheeeeeeeeccccchhhhcchhhhhCCCceehHhHHHHHHHHHHHH
Confidence 33445667888888988887 9999999999999999999999985 45778899999999999999
Q ss_pred HhHHHHHHHHH
Q 047952 144 MFLSKAADYLV 154 (354)
Q Consensus 144 ~~~~~~~~~~~ 154 (354)
.+++.+.-.+.
T Consensus 238 a~~NllvLrf~ 248 (350)
T KOG4404|consen 238 ALLNLLVLRFM 248 (350)
T ss_pred HHHHHHHHHHH
Confidence 99988765553
No 14
>PRK10537 voltage-gated potassium channel; Provisional
Probab=99.20 E-value=8.3e-11 Score=114.95 Aligned_cols=82 Identities=23% Similarity=0.372 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHhhhcccCCCcCCchhhhhhhhhhhcccccCccccCCccchhHHHHHHHHhHHHHHHhHHHHHHHHHHH
Q 047952 77 AYLGGGSLSFYAVNSQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGMFLSKAADYLVDK 156 (354)
Q Consensus 77 ~~l~~g~~~~~~~e~~~~~~~~~~~~~a~yf~~~t~tTvGyGdi~P~t~~~r~~~~~~~l~Gi~~~~~~~~~~~~~~~~~ 156 (354)
..++.+.+.+++.+++++ +..+++.+|+||+++|+||+||||++|.|+.||++++++++.|+.++++.++.+...+.+.
T Consensus 146 ~l~~~~~~g~~~~~~~f~-~~~~s~~dA~y~svvt~tTvGyGdi~p~t~~grl~~i~~ii~Gi~vf~~~is~i~~p~i~~ 224 (393)
T PRK10537 146 SLLFYSTFGALYLGDGFS-PPIESLSTAFYFSIVTMSTVGYGDIVPVSESARLFTISVIILGITVFATSISAIFGPVIRG 224 (393)
T ss_pred HHHHHHHHHHHHHccccC-cCCCCHHHHHHhhheeeecccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555666665443 3458999999999999999999999999999999999999999999999988887766554
Q ss_pred HHH
Q 047952 157 QEI 159 (354)
Q Consensus 157 ~~~ 159 (354)
+.+
T Consensus 225 ~l~ 227 (393)
T PRK10537 225 NLK 227 (393)
T ss_pred HHH
Confidence 433
No 15
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=99.13 E-value=2.2e-10 Score=122.60 Aligned_cols=57 Identities=28% Similarity=0.597 Sum_probs=53.1
Q ss_pred chhhhhhhhhhhcccccCccccCCccchhHHHHHHHHhHHHHHHhHHHHHHHHHHHH
Q 047952 101 ILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGMFLSKAADYLVDKQ 157 (354)
Q Consensus 101 ~~~a~yf~~~t~tTvGyGdi~P~t~~~r~~~~~~~l~Gi~~~~~~~~~~~~~~~~~~ 157 (354)
|..|+||+++|||||||||++|.|+.+++++++++++|+.++++.++.+++++.+..
T Consensus 251 Yi~slYwai~TmtTVGYGDi~p~t~~E~i~~i~~ml~g~~~~a~~ig~i~~li~~~~ 307 (823)
T PLN03192 251 YISAIYWSITTMTTVGYGDLHAVNTIEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGT 307 (823)
T ss_pred HHHHHHHHHHHHhhccCCCcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666999999999999999999999999999999999999999999999999886543
No 16
>KOG4390 consensus Voltage-gated A-type K+ channel KCND [Inorganic ion transport and metabolism]
Probab=99.04 E-value=7.2e-11 Score=110.95 Aligned_cols=84 Identities=21% Similarity=0.365 Sum_probs=69.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcCCchhhhhhhhhhhcccccCccccCCccchhHHHHHHHHhHHHHHHhH
Q 047952 67 NFKRVLVYLAAYLGGGSLSFYAVNSQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGMFL 146 (354)
Q Consensus 67 ~~~~~~~~l~~~l~~g~~~~~~~e~~~~~~~~~~~~~a~yf~~~t~tTvGyGdi~P~t~~~r~~~~~~~l~Gi~~~~~~~ 146 (354)
.+..+++.+..-+++.+.++++.|...+...+.+...||||.++||||+||||.+|.|..||+|..+..+.|+.++++-+
T Consensus 323 ELGFLlFSLtMAIIIFATvMfYAEKg~~at~FTsIPaaFWYTIVTmTTLGYGDMVp~TIaGKIfGsiCSLSGVLVIALPV 402 (632)
T KOG4390|consen 323 ELGFLLFSLTMAIIIFATVMFYAEKGSSATKFTSIPAAFWYTIVTMTTLGYGDMVPSTIAGKIFGSICSLSGVLVIALPV 402 (632)
T ss_pred HHhHHHHHHHHHHHHHHHHHHhhhccccccccccCcHhHhhheeeeeeccccccchHHHHHHHhhhhhcccceEEEeccc
Confidence 34444555555566677777788888788888999999999999999999999999999999999999999999888755
Q ss_pred HHHH
Q 047952 147 SKAA 150 (354)
Q Consensus 147 ~~~~ 150 (354)
..+.
T Consensus 403 PvIV 406 (632)
T KOG4390|consen 403 PVIV 406 (632)
T ss_pred cEEE
Confidence 4433
No 17
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism]
Probab=98.89 E-value=2e-09 Score=105.88 Aligned_cols=61 Identities=23% Similarity=0.399 Sum_probs=57.2
Q ss_pred cCCccccceeeeeeecccccCCcccCCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047952 212 KMSFVDAFYCVCSTITTLGYGDKSFSTTGGRAFGVVWISSSTMTLAQFFLYVAEFNTEKRQ 272 (354)
Q Consensus 212 ~~~~~da~yf~~vT~tTVGyGD~~p~t~~gr~~~~~~i~~g~~~~~~~~~~i~~~~~~~~~ 272 (354)
.|+|.+|+||+++++||||||+++|.|..||+|+++|.++|+.++.++++.+...+.+.-.
T Consensus 113 ~W~f~~al~fs~tv~TTIGYG~i~P~T~~Gr~~~i~YaliGIPl~li~l~~~g~~l~~~~~ 173 (433)
T KOG1418|consen 113 QWSFSSALLFSITVITTIGYGNIAPRTDAGRLFTILYALVGIPLMLLILADIGKFLADSLR 173 (433)
T ss_pred ceecchhHhhhhheeeeccCCcccCCcCcchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 3999999999999999999999999999999999999999999999999999988886433
No 18
>KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=98.86 E-value=2e-09 Score=105.64 Aligned_cols=99 Identities=14% Similarity=0.305 Sum_probs=78.3
Q ss_pred hHHhhcC-CcchHHHHHHHHHHHHHHHHHHHHHhhhccc------CCCcCCchhhhhhhhhhhcccccCccccCCccchh
Q 047952 57 SESLFGK-PRPNFKRVLVYLAAYLGGGSLSFYAVNSQIE------GLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKL 129 (354)
Q Consensus 57 ~~~~~~~-~~~~~~~~~~~l~~~l~~g~~~~~~~e~~~~------~~~~~~~~~a~yf~~~t~tTvGyGdi~P~t~~~r~ 129 (354)
+..++++ ....+..++-+++...+.++.+.++.|+.-+ +..-.+|.++.||.++||+||||||++..|..||+
T Consensus 238 ylnilktsssirl~qlvsifisvwltaag~ihllensgdp~~~f~n~hrltyw~cvyfl~vtmstvgygdvyc~t~lgrl 317 (1103)
T KOG1420|consen 238 YLNILKTSSSIRLVQLVSIFISVWLTAAGFIHLLENSGDPWENFQNNHRLTYWECVYFLMVTMSTVGYGDVYCKTTLGRL 317 (1103)
T ss_pred HHHHHhccchhhHHHHHHHHHHHHHhhcceeehhhcCCChhHhccCcccchhhheeeeeEEEeeeccccceeehhhhhHH
Confidence 3333443 4455666666677777778888888885432 23336899999999999999999999999999999
Q ss_pred HHHHHHHHhHHHHHHhHHHHHHHHHH
Q 047952 130 LSCAFVFTGMGLVGMFLSKAADYLVD 155 (354)
Q Consensus 130 ~~~~~~l~Gi~~~~~~~~~~~~~~~~ 155 (354)
|.++|++.|+++++..+..+.+.+-.
T Consensus 318 fmvffil~glamfasyvpeiielign 343 (1103)
T KOG1420|consen 318 FMVFFILGGLAMFASYVPEIIELIGN 343 (1103)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHcc
Confidence 99999999999999998888877643
No 19
>KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=98.85 E-value=2.9e-09 Score=104.48 Aligned_cols=82 Identities=23% Similarity=0.421 Sum_probs=71.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhc-------------CCccccceeeeeeecccccCCcccCCcCchHHHHHHHHHHHH
Q 047952 188 KCIIMLVLELVLILVGTIFLVVVEK-------------MSFVDAFYCVCSTITTLGYGDKSFSTTGGRAFGVVWISSSTM 254 (354)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~e~-------------~~~~da~yf~~vT~tTVGyGD~~p~t~~gr~~~~~~i~~g~~ 254 (354)
++...+.+++..++.++-+.+..|+ .+|+++.||-++||+||||||+...|..||.|.+++++.|++
T Consensus 249 rl~qlvsifisvwltaag~ihllensgdp~~~f~n~hrltyw~cvyfl~vtmstvgygdvyc~t~lgrlfmvffil~gla 328 (1103)
T KOG1420|consen 249 RLVQLVSIFISVWLTAAGFIHLLENSGDPWENFQNNHRLTYWECVYFLMVTMSTVGYGDVYCKTTLGRLFMVFFILGGLA 328 (1103)
T ss_pred hHHHHHHHHHHHHHhhcceeehhhcCCChhHhccCcccchhhheeeeeEEEeeeccccceeehhhhhHHHHHHHHHHHHH
Confidence 4455667777888888888888875 679999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 047952 255 TLAQFFLYVAEFNTE 269 (354)
Q Consensus 255 ~~~~~~~~i~~~~~~ 269 (354)
.++..+..+++++-.
T Consensus 329 mfasyvpeiielign 343 (1103)
T KOG1420|consen 329 MFASYVPEIIELIGN 343 (1103)
T ss_pred HHHhhhHHHHHHHcc
Confidence 999888888877654
No 20
>KOG4390 consensus Voltage-gated A-type K+ channel KCND [Inorganic ion transport and metabolism]
Probab=98.76 E-value=1.1e-09 Score=103.11 Aligned_cols=71 Identities=30% Similarity=0.387 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHhc-------CCccccceeeeeeecccccCCcccCCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047952 199 LILVGTIFLVVVEK-------MSFVDAFYCVCSTITTLGYGDKSFSTTGGRAFGVVWISSSTMTLAQFFLYVAEFNTE 269 (354)
Q Consensus 199 ~~~~~~~~~~~~e~-------~~~~da~yf~~vT~tTVGyGD~~p~t~~gr~~~~~~i~~g~~~~~~~~~~i~~~~~~ 269 (354)
.+++.+.++.+.|+ .+...||||+++||||.||||++|.|..||+|..++.+.|+.++++.+..+++-+..
T Consensus 334 AIIIFATvMfYAEKg~~at~FTsIPaaFWYTIVTmTTLGYGDMVp~TIaGKIfGsiCSLSGVLVIALPVPvIVSNFSR 411 (632)
T KOG4390|consen 334 AIIIFATVMFYAEKGSSATKFTSIPAAFWYTIVTMTTLGYGDMVPSTIAGKIFGSICSLSGVLVIALPVPVIVSNFSR 411 (632)
T ss_pred HHHHHHHHHHhhhccccccccccCcHhHhhheeeeeeccccccchHHHHHHHhhhhhcccceEEEeccccEEEechhH
Confidence 33344444445554 467789999999999999999999999999999999999999999999888777664
No 21
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]
Probab=98.73 E-value=1.5e-07 Score=90.83 Aligned_cols=83 Identities=18% Similarity=0.305 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc--------CCccccceeeeeeecccccCCcccCCcCchHHHHHHHHHHHHHHHHHH
Q 047952 189 CIIMLVLELVLILVGTIFLVVVEK--------MSFVDAFYCVCSTITTLGYGDKSFSTTGGRAFGVVWISSSTMTLAQFF 260 (354)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~e~--------~~~~da~yf~~vT~tTVGyGD~~p~t~~gr~~~~~~i~~g~~~~~~~~ 260 (354)
........+.++++.++.+...|. .+|.+++|+..+|+-+|||||++|.|..||.++++..+.|.++.+.++
T Consensus 254 g~vL~vftl~~Wii~sW~~~~cER~~~~~~~~~~~~nsmWli~iTFlsiGYGDiVP~TycGr~v~l~tGivGa~~sallv 333 (489)
T KOG3684|consen 254 GTVLLVFTLSLWIIASWMLRQCERYHDSQDVTINYLNSMWLIAITFLSIGYGDIVPNTYCGRGVALLTGIVGAGCSSLLV 333 (489)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHhhHHHHHHHHhhcccCcccCCccccchHHHHhhhhhhhHHHHHH
Confidence 334444556677888888888875 458999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 047952 261 LYVAEFNTEKR 271 (354)
Q Consensus 261 ~~i~~~~~~~~ 271 (354)
+.++..+...+
T Consensus 334 AvisRKLeLt~ 344 (489)
T KOG3684|consen 334 AVIARKLELTK 344 (489)
T ss_pred HHHHHHHHHHH
Confidence 99987666543
No 22
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=98.60 E-value=1.9e-07 Score=96.57 Aligned_cols=57 Identities=23% Similarity=0.426 Sum_probs=53.6
Q ss_pred CchhhhhhhhhhhcccccCccccCCccchhHHHHHHHHhHHHHHHhHHHHHHHHHHH
Q 047952 100 EILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGMFLSKAADYLVDK 156 (354)
Q Consensus 100 ~~~~a~yf~~~t~tTvGyGdi~P~t~~~r~~~~~~~l~Gi~~~~~~~~~~~~~~~~~ 156 (354)
.|..|+||+++||||+|||+.+|.+...++|++++|++|+.+++++++++.+++.+.
T Consensus 294 kY~~aLyw~l~tLstvG~g~~~s~~~~E~iFsi~~mi~GllL~A~lIGNmt~~iqs~ 350 (727)
T KOG0498|consen 294 KYVYALYWGLSTLSTVGYGLVHANNMGEKIFSIFIMLFGLLLFAYLIGNMTALLQSL 350 (727)
T ss_pred HHHHHHHHHhhHhhhccCCccCCCCcHHHHHHHHHHHHhHHHHHHHHhhHHHhHHHH
Confidence 366799999999999999999999999999999999999999999999999998753
No 23
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]
Probab=98.59 E-value=2.6e-07 Score=89.18 Aligned_cols=90 Identities=20% Similarity=0.306 Sum_probs=67.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhhcccC-CCcCCchhhhhhhhhhhcccccCccccCCccchhHHHHHHHHhHHHHHH
Q 047952 66 PNFKRVLVYLAAYLGGGSLSFYAVNSQIEG-LKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGM 144 (354)
Q Consensus 66 ~~~~~~~~~l~~~l~~g~~~~~~~e~~~~~-~~~~~~~~a~yf~~~t~tTvGyGdi~P~t~~~r~~~~~~~l~Gi~~~~~ 144 (354)
|-..++++.+.+|+ +.+.++...|.+.+. +..-+|.+++|+..+|+.++||||++|.|..||.++++-.++|..+.++
T Consensus 253 Pg~vL~vftl~~Wi-i~sW~~~~cER~~~~~~~~~~~~nsmWli~iTFlsiGYGDiVP~TycGr~v~l~tGivGa~~sal 331 (489)
T KOG3684|consen 253 PGTVLLVFTLSLWI-IASWMLRQCERYHDSQDVTINYLNSMWLIAITFLSIGYGDIVPNTYCGRGVALLTGIVGAGCSSL 331 (489)
T ss_pred chHHHHHHHHHHHH-HHHHHHHHHHHHhcchhhHHHHHhhHHHHHHHHhhcccCcccCCccccchHHHHhhhhhhhHHHH
Confidence 33333344444444 444445555544322 2446799999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHH
Q 047952 145 FLSKAADYLVDK 156 (354)
Q Consensus 145 ~~~~~~~~~~~~ 156 (354)
+++.++.-+...
T Consensus 332 lvAvisRKLeLt 343 (489)
T KOG3684|consen 332 LVAVIARKLELT 343 (489)
T ss_pred HHHHHHHHHHHH
Confidence 999998766433
No 24
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=98.56 E-value=5.7e-08 Score=100.45 Aligned_cols=54 Identities=22% Similarity=0.309 Sum_probs=51.1
Q ss_pred cccceeeeeeecccccCCcccCCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047952 216 VDAFYCVCSTITTLGYGDKSFSTTGGRAFGVVWISSSTMTLAQFFLYVAEFNTE 269 (354)
Q Consensus 216 ~da~yf~~vT~tTVGyGD~~p~t~~gr~~~~~~i~~g~~~~~~~~~~i~~~~~~ 269 (354)
.-|+||++.|+|||||||..|.+..-++|++++|++|++++|++++++..++..
T Consensus 296 ~~aLyw~l~tLstvG~g~~~s~~~~E~iFsi~~mi~GllL~A~lIGNmt~~iqs 349 (727)
T KOG0498|consen 296 VYALYWGLSTLSTVGYGLVHANNMGEKIFSIFIMLFGLLLFAYLIGNMTALLQS 349 (727)
T ss_pred HHHHHHHhhHhhhccCCccCCCCcHHHHHHHHHHHHhHHHHHHHHhhHHHhHHH
Confidence 347999999999999999999999999999999999999999999999998876
No 25
>KOG3193 consensus K+ channel subunit [Inorganic ion transport and metabolism]
Probab=98.35 E-value=2.4e-06 Score=84.00 Aligned_cols=83 Identities=18% Similarity=0.288 Sum_probs=62.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHh-----cCCccccceeeeeeecccccCCcccCCcCchHHHHHHHHHHHHHHHHHHHH
Q 047952 188 KCIIMLVLELVLILVGTIFLVVVE-----KMSFVDAFYCVCSTITTLGYGDKSFSTTGGRAFGVVWISSSTMTLAQFFLY 262 (354)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~e-----~~~~~da~yf~~vT~tTVGyGD~~p~t~~gr~~~~~~i~~g~~~~~~~~~~ 262 (354)
.+.+.+..++.+++.|...+-.+. ..+.+.++||.++|++||||||.+|.-++.++..+++|...++++---+..
T Consensus 186 ql~ll~s~l~clift~~c~i~h~qra~~k~i~lf~s~y~v~vtfstvgygd~~pd~w~sql~~vi~icval~~ip~q~~~ 265 (1087)
T KOG3193|consen 186 QLLLLFSVLACLIFTGMCSIEHLQRARGKRIDLFTSFYFVMVTFSTVGYGDWYPDYWASQLCVVILICVALGLIPKQLDE 265 (1087)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHccCceeeeeeeEEEEEEEEeeccccccccccchhhHHHHHHHHHHHhccHHHHHH
Confidence 333334444444555555554444 278999999999999999999999999999999999999888887777776
Q ss_pred HHHHHHHH
Q 047952 263 VAEFNTEK 270 (354)
Q Consensus 263 i~~~~~~~ 270 (354)
++..+.|+
T Consensus 266 l~~tw~er 273 (1087)
T KOG3193|consen 266 LGQTWSER 273 (1087)
T ss_pred HHHHHHHH
Confidence 66666553
No 26
>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Inwardly-rectifying potassium channels (Kir) are the principal class of two-TM domain potassium channels. They are characterised by the property of inward-rectification, which is described as the ability to allow large inward currents and smaller outward currents. Inwardly rectifying potassium channels (Kir) are responsible for regulating diverse processes including: cellular excitability, vascular tone, heart rate, renal salt flow, and insulin release []. To date, around twenty members of this superfamily have been cloned, which can be grouped into six families by sequence similarity, and these are designated Kir1.x-6.x [, ]. Cloned Kir channel cDNAs encode proteins of between ~370-500 residues, both N- and C-termini are thought to be cytoplasmic, and the N terminus lacks a signal sequence. Kir channel alpha subunits possess only 2TM domains linked with a P-domain. Thus, Kir channels share similarity with the fifth and sixth domains, and P-domain of the other families. It is thought that four Kir subunits assemble to form a tetrameric channel complex, which may be hetero- or homomeric [].; PDB: 3AT9_A 3AUW_D 3SYA_A 3ATE_A 3SYQ_A 3SYO_A 3ATB_A 3SYC_A 3AT8_A 3ATA_A ....
Probab=98.18 E-value=5.3e-06 Score=79.51 Aligned_cols=58 Identities=21% Similarity=0.305 Sum_probs=48.4
Q ss_pred CCchhhhhhhhhhhcccccCc--cccCCccchhHHHHHHHHhHHHHHHhHHHHHHHHHHH
Q 047952 99 NEILDSIYFCIVTMTTVGYGD--LVPNSVVSKLLSCAFVFTGMGLVGMFLSKAADYLVDK 156 (354)
Q Consensus 99 ~~~~~a~yf~~~t~tTvGyGd--i~P~t~~~r~~~~~~~l~Gi~~~~~~~~~~~~~~~~~ 156 (354)
.+|.+||+|++.|+||||||. +.|..+.+-++..+.+++|+.+.+.+++.+-..+.+.
T Consensus 83 ~~f~~aF~FSveT~tTIGYG~~~~~~~c~~a~~l~~~q~~~g~l~~a~~~Glvfar~srP 142 (336)
T PF01007_consen 83 NSFTSAFLFSVETQTTIGYGSRYPTPECPYAIFLVTIQSLVGLLLDAFMTGLVFARFSRP 142 (336)
T ss_dssp TTHHHHHHHHHHHHTT---SSSEB-CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred cchhhheeEEEEEEEEeccCCcccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 589999999999999999998 6788889999999999999999999998887777543
No 27
>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]
Probab=98.12 E-value=7.9e-06 Score=81.07 Aligned_cols=56 Identities=25% Similarity=0.542 Sum_probs=52.3
Q ss_pred CchhhhhhhhhhhcccccCccccCCccchhHHHHHHHHhHHHHHHhHHHHHHHHHH
Q 047952 100 EILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGMFLSKAADYLVD 155 (354)
Q Consensus 100 ~~~~a~yf~~~t~tTvGyGdi~P~t~~~r~~~~~~~l~Gi~~~~~~~~~~~~~~~~ 155 (354)
-|..++||.+++|||||||++.|.|...|+|++..|++|-.+.+.+++.++.++.+
T Consensus 423 ~YissLYfTMt~mttvGFGNiA~~TD~EKiF~v~mMii~aLLYAtIFG~vTTI~QQ 478 (971)
T KOG0501|consen 423 AYISSLYFTMTCMTTVGFGNIAPNTDNEKIFGVCMMIIGALLYATIFGHVTTIIQQ 478 (971)
T ss_pred eehhhhhhhhhhhhcccccccCCCccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 58899999999999999999999999999999999999999999999988887754
No 28
>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]
Probab=98.06 E-value=2.9e-05 Score=77.14 Aligned_cols=56 Identities=21% Similarity=0.432 Sum_probs=52.4
Q ss_pred ccccceeeeeeecccccCCcccCCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047952 215 FVDAFYCVCSTITTLGYGDKSFSTTGGRAFGVVWISSSTMTLAQFFLYVAEFNTEK 270 (354)
Q Consensus 215 ~~da~yf~~vT~tTVGyGD~~p~t~~gr~~~~~~i~~g~~~~~~~~~~i~~~~~~~ 270 (354)
|..++||++.++||||||.+.|.|...++|++.+|++|-.+.+..++.++..+.+.
T Consensus 424 YissLYfTMt~mttvGFGNiA~~TD~EKiF~v~mMii~aLLYAtIFG~vTTI~QQM 479 (971)
T KOG0501|consen 424 YISSLYFTMTCMTTVGFGNIAPNTDNEKIFGVCMMIIGALLYATIFGHVTTIIQQM 479 (971)
T ss_pred ehhhhhhhhhhhhcccccccCCCccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 66789999999999999999999999999999999999999999999998887764
No 29
>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Inwardly-rectifying potassium channels (Kir) are the principal class of two-TM domain potassium channels. They are characterised by the property of inward-rectification, which is described as the ability to allow large inward currents and smaller outward currents. Inwardly rectifying potassium channels (Kir) are responsible for regulating diverse processes including: cellular excitability, vascular tone, heart rate, renal salt flow, and insulin release []. To date, around twenty members of this superfamily have been cloned, which can be grouped into six families by sequence similarity, and these are designated Kir1.x-6.x [, ]. Cloned Kir channel cDNAs encode proteins of between ~370-500 residues, both N- and C-termini are thought to be cytoplasmic, and the N terminus lacks a signal sequence. Kir channel alpha subunits possess only 2TM domains linked with a P-domain. Thus, Kir channels share similarity with the fifth and sixth domains, and P-domain of the other families. It is thought that four Kir subunits assemble to form a tetrameric channel complex, which may be hetero- or homomeric [].; PDB: 3AT9_A 3AUW_D 3SYA_A 3ATE_A 3SYQ_A 3SYO_A 3ATB_A 3SYC_A 3AT8_A 3ATA_A ....
Probab=97.91 E-value=1.6e-05 Score=76.25 Aligned_cols=57 Identities=21% Similarity=0.097 Sum_probs=46.7
Q ss_pred CCccccceeeeeeecccccCC--cccCCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047952 213 MSFVDAFYCVCSTITTLGYGD--KSFSTTGGRAFGVVWISSSTMTLAQFFLYVAEFNTE 269 (354)
Q Consensus 213 ~~~~da~yf~~vT~tTVGyGD--~~p~t~~gr~~~~~~i~~g~~~~~~~~~~i~~~~~~ 269 (354)
.+|.+||+|++-|.||||||. +.|..+.+-++..+-.++|+.+.+.+++.+..-+..
T Consensus 83 ~~f~~aF~FSveT~tTIGYG~~~~~~~c~~a~~l~~~q~~~g~l~~a~~~Glvfar~sr 141 (336)
T PF01007_consen 83 NSFTSAFLFSVETQTTIGYGSRYPTPECPYAIFLVTIQSLVGLLLDAFMTGLVFARFSR 141 (336)
T ss_dssp TTHHHHHHHHHHHHTT---SSSEB-CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred cchhhheeEEEEEEEEeccCCcccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 478999999999999999999 567777888888999999999999999998877664
No 30
>KOG3193 consensus K+ channel subunit [Inorganic ion transport and metabolism]
Probab=97.78 E-value=2.9e-05 Score=76.59 Aligned_cols=64 Identities=30% Similarity=0.515 Sum_probs=50.4
Q ss_pred CCCcCCchhhhhhhhhhhcccccCccccCCccchhHHHHHHHHhHHHHHHhHHHHHHHHHHHHH
Q 047952 95 GLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGMFLSKAADYLVDKQE 158 (354)
Q Consensus 95 ~~~~~~~~~a~yf~~~t~tTvGyGdi~P~t~~~r~~~~~~~l~Gi~~~~~~~~~~~~~~~~~~~ 158 (354)
+....+.+.++||.++|++||||||.+|.-+..++..++.+-+.+.++.--+..++.-..++++
T Consensus 212 ~~k~i~lf~s~y~v~vtfstvgygd~~pd~w~sql~~vi~icval~~ip~q~~~l~~tw~erqk 275 (1087)
T KOG3193|consen 212 RGKRIDLFTSFYFVMVTFSTVGYGDWYPDYWASQLCVVILICVALGLIPKQLDELGQTWSERQK 275 (1087)
T ss_pred cCceeeeeeeEEEEEEEEeeccccccccccchhhHHHHHHHHHHHhccHHHHHHHHHHHHHHhh
Confidence 3344789999999999999999999999998888888887777777776666666655554443
No 31
>TIGR00933 2a38 potassium uptake protein, TrkH family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system.
Probab=97.54 E-value=0.0003 Score=69.28 Aligned_cols=173 Identities=16% Similarity=0.175 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHHHhhhcc--cCCCcCCchhhhhhhhhhhcccccC--ccccCCccchhHHHHHHHHhHHHHHHh--HHH
Q 047952 75 LAAYLGGGSLSFYAVNSQI--EGLKTNEILDSIYFCIVTMTTVGYG--DLVPNSVVSKLLSCAFVFTGMGLVGMF--LSK 148 (354)
Q Consensus 75 l~~~l~~g~~~~~~~e~~~--~~~~~~~~~~a~yf~~~t~tTvGyG--di~P~t~~~r~~~~~~~l~Gi~~~~~~--~~~ 148 (354)
.++++..+.+.++..|... .+.....+.++.++..++++|.||. |..--++..+++.++.|++|-.--+.. +..
T Consensus 204 ~~~l~~~~~i~~~l~~~~~~~~~~~~~~~~~~~f~~~s~~~T~Gfst~d~~~~~~~~~lll~~lMfIGg~~gSTaGGiK~ 283 (390)
T TIGR00933 204 TFLLLAIGFILFLLLERGNTLYSYSFGALLLSAFFQSSTLRTAGFSTIDFAALPTATLVLLLLLMFIGGCSGSTAGGIKT 283 (390)
T ss_pred HHHHHHHHHHHHHHHHHcccccCCCHHHHHHHHHHHHhhccCCCccccChhhcCHHHHHHHHHHHHHcCCCcccCCchHH
Confidence 3334455666666666321 1122245788999999999999996 555456778888888888764332221 111
Q ss_pred HHHHHHHHHHHHHHHHHhhccccCCccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHh----cCCccccceeeee
Q 047952 149 AADYLVDKQEILLVKALHRYQKVGPTDILKEIETNKVRYKCIIMLVLELVLILVGTIFLVVVE----KMSFVDAFYCVCS 224 (354)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e----~~~~~da~yf~~v 224 (354)
..-.+.-+.....+|+....... ..++++.+.+.......+..++ ++.++.++....| +.++.|+++=++.
T Consensus 284 ~r~~vl~~~~~~~~~~~~~~~~v----~~~~i~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~fe~~S 358 (390)
T TIGR00933 284 TTFAILLKQVYREIRRGIHPRII----FSRRIGGKTIDKAILISVWSFF-LVFALIFLLSILELISSGYDFLTSLFEVVS 358 (390)
T ss_pred HHHHHHHHHHHHHHHccCCCceE----EeEEECCeehHHHHHHHHHHHH-HHHHHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 11111111111112211111100 1112222222222222111111 1112222333333 7899999999999
Q ss_pred eecccccCC-c-cc-CCcCchHHHHHHHHHH
Q 047952 225 TITTLGYGD-K-SF-STTGGRAFGVVWISSS 252 (354)
Q Consensus 225 T~tTVGyGD-~-~p-~t~~gr~~~~~~i~~g 252 (354)
.++|||.+- + .| -++.+|++.++.|++|
T Consensus 359 a~~tvGls~g~~~~~l~~~~k~il~~~M~~G 389 (390)
T TIGR00933 359 AFGTVGLSVGLTTANLPDAGKLILIVLMFIG 389 (390)
T ss_pred HhcCcCCCCCCCcccCCHHHHHHHHHHHHcC
Confidence 999998874 2 24 3557899888888766
No 32
>PRK10750 potassium transporter; Provisional
Probab=97.15 E-value=0.002 Score=64.96 Aligned_cols=182 Identities=13% Similarity=0.064 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccCCCcCCchhhhhhhhhhhcccccC--ccccCCccchhHHHHHHHHhHHHHHHh
Q 047952 68 FKRVLVYLAAYLGGGSLSFYAVNSQIEGLKTNEILDSIYFCIVTMTTVGYG--DLVPNSVVSKLLSCAFVFTGMGLVGMF 145 (354)
Q Consensus 68 ~~~~~~~l~~~l~~g~~~~~~~e~~~~~~~~~~~~~a~yf~~~t~tTvGyG--di~P~t~~~r~~~~~~~l~Gi~~~~~~ 145 (354)
.+..+.+.++..+++++.++..|. .++....+.++++.++..+||.||. |+.--++..+.+.++.|++|=.--+..
T Consensus 274 ~r~~l~~~~~~~~~~~~~l~~~~~--~~~~~~~l~~s~Fq~vS~~tTtGF~t~d~~~w~~~~~~ll~~lMfIGG~~GSTa 351 (483)
T PRK10750 274 FRMFIGVQLTLVVICTLVLWFHNV--YSSALMTLNQAFFQVVSMATTAGFTTDSIARWPLFLPVLLLCSAFIGGCAGSTG 351 (483)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc--ccCHHHHHHHHHHeeeecccCCCCCCCChhhccHHHHHHHHHHHHHcCCcccCc
Confidence 444444444445555555544331 1111134667777777778999997 444445566777777777654433331
Q ss_pred --HHHHHHHHHHHHHHHHHHHHhhccccCCccch-hhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCccccceee
Q 047952 146 --LSKAADYLVDKQEILLVKALHRYQKVGPTDIL-KEIETNKVRYKCIIMLVLELVLILVGTIFLVVVEKMSFVDAFYCV 222 (354)
Q Consensus 146 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~da~yf~ 222 (354)
+....-.+.-+..+...|+....+...+-++. |.++++ ...+....+++.++.+++++.+. ..++.+..+|+--+
T Consensus 352 GGIKv~R~~vl~~~~~~~l~~~~~P~~V~~v~~~gr~i~~~-~v~~v~~~~~ly~~~~~~~~~~l-~~~g~~~~sA~~~v 429 (483)
T PRK10750 352 GGLKVIRILLLFKQGNRELKRLVHPNAVYSIKLGNRALPER-ILEAVWGFFSAYALVFIVSMLAI-IATGVDDFSAFASV 429 (483)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhcCCCceeeeeECCEECCHH-HHHHHHHHHHHHHHHHHHHHHHH-HHcCCcHHHHHHHH
Confidence 11111111111112222222111111111111 122222 22344444444455555555555 56778889999888
Q ss_pred eeeecccccCC-cc-----cCCcCchHHHHHHHHHHH
Q 047952 223 CSTITTLGYGD-KS-----FSTTGGRAFGVVWISSST 253 (354)
Q Consensus 223 ~vT~tTVGyGD-~~-----p~t~~gr~~~~~~i~~g~ 253 (354)
..++++||.|= .+ .-++.+|++.++.|++|=
T Consensus 430 ~s~l~nvG~s~G~~~~~f~~l~~~~K~il~~~MllGR 466 (483)
T PRK10750 430 VATLNNLGPGLGVVADNFTSMNPVAKWILIANMLFGR 466 (483)
T ss_pred HHHhcCCCCCchhhccccccCCHHHHHHHHHHHHHHH
Confidence 88888887663 23 334678999999888874
No 33
>KOG3827 consensus Inward rectifier K+ channel [Inorganic ion transport and metabolism]
Probab=97.09 E-value=0.0015 Score=62.34 Aligned_cols=60 Identities=17% Similarity=0.211 Sum_probs=48.9
Q ss_pred CCchhhhhhhhhhhcccccCccccC--CccchhHHHHHHHHhHHHHHHhHHHHHHHHHHHHH
Q 047952 99 NEILDSIYFCIVTMTTVGYGDLVPN--SVVSKLLSCAFVFTGMGLVGMFLSKAADYLVDKQE 158 (354)
Q Consensus 99 ~~~~~a~yf~~~t~tTvGyGdi~P~--t~~~r~~~~~~~l~Gi~~~~~~~~~~~~~~~~~~~ 158 (354)
.+|..||-|++.|=||||||--++. =|.+-+..++.+++|+.+-+.+++.+-.-+.+..+
T Consensus 111 ~sf~sAFLFSiETQtTIGYG~R~vTeeCP~aI~ll~~Q~I~g~ii~afm~G~i~aKiarPkK 172 (400)
T KOG3827|consen 111 HSFTSAFLFSIETQTTIGYGFRYVTEECPEAIFLLVLQSILGVIINAFMVGAIFAKIARPKK 172 (400)
T ss_pred cchhhhheeeeeeeeeeeccccccCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchh
Confidence 5899999999999999999976665 45677888889999999999888877666654433
No 34
>PRK05482 potassium-transporting ATPase subunit A; Provisional
Probab=96.92 E-value=0.0088 Score=60.64 Aligned_cols=190 Identities=16% Similarity=0.145 Sum_probs=107.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhcccCC--------Cc-CC------chhhhhhhhhhhcccc-cCccccC-Cccchh
Q 047952 67 NFKRVLVYLAAYLGGGSLSFYAVNSQIEGL--------KT-NE------ILDSIYFCIVTMTTVG-YGDLVPN-SVVSKL 129 (354)
Q Consensus 67 ~~~~~~~~l~~~l~~g~~~~~~~e~~~~~~--------~~-~~------~~~a~yf~~~t~tTvG-yGdi~P~-t~~~r~ 129 (354)
.-+.++....+.++++++.+++.|...++. +. .. ...|+|-+++|-||.| +-.+... ++.+.+
T Consensus 280 h~kivl~~~~iL~i~g~~~~~~~E~~~np~l~~l~~~gn~egKE~RfG~~~salF~svTtrtTaG~fNsm~dsltp~~~l 359 (559)
T PRK05482 280 QGWAILAAMLVLFLAGLAVTMWAELQGNPALAALGIDGNMEGKEVRFGIAASALFAVVTTAASTGAVNAMHDSLTPLGGL 359 (559)
T ss_pred ceehhHHHHHHHHHHHHHHHHHHHccCCcchhhccCCCCcccchhhhhhHHHHHHHHHHhhhhcchHHHHHHhhccHHHH
Confidence 444455556667777888888888431110 00 12 5678888888887888 5544332 778889
Q ss_pred HHHHHHHHh-HH-------HHH-HhHHHHHHHHHHHHHHHHHHHHhhccccCCccchhhhhhhhhhhhHHHHHHHHHHHH
Q 047952 130 LSCAFVFTG-MG-------LVG-MFLSKAADYLVDKQEILLVKALHRYQKVGPTDILKEIETNKVRYKCIIMLVLELVLI 200 (354)
Q Consensus 130 ~~~~~~l~G-i~-------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (354)
+.++.|++| .. +.. ..+..+.-.+ ...++. | .++-.-|+++.+..+......+. ..+++
T Consensus 360 v~m~lMfIG~~~pGGtGgGl~~~~tfaIL~vfi-----~glmvG----r--tpe~~gRkI~~~eik~A~~vilv-~~~lV 427 (559)
T PRK05482 360 VPLLNMQLGEVIFGGVGSGLYGMLVFVILAVFI-----AGLMVG----R--TPEYLGKKIEAREMKLAALAILV-HPLLV 427 (559)
T ss_pred HHHHHHHhCCCCCccchHhHHHHHHHHHHHHHH-----HhHccC----C--CCeEEccccCHHHHHHHHHHHHH-HHHHH
Confidence 999999987 32 122 1111111111 011111 1 12223345555554444333332 22333
Q ss_pred HHHH-HHHHH-------Hhc--CCccccceeeeeeecccccC--CcccCCcCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047952 201 LVGT-IFLVV-------VEK--MSFVDAFYCVCSTITTLGYG--DKSFSTTGGRAFGVVWISSSTMTLAQFFLYVAEFNT 268 (354)
Q Consensus 201 ~~~~-~~~~~-------~e~--~~~~da~yf~~vT~tTVGyG--D~~p~t~~gr~~~~~~i~~g~~~~~~~~~~i~~~~~ 268 (354)
++++ +.... .|+ ..+.|.+|=......|+|.+ ++.+.++.+++..++.|++|=...-.+.-.++..+.
T Consensus 428 l~~taial~~~~~~~~~~n~g~hgfseiLyE~~SA~~tnGss~gGLt~~t~~~niil~~~M~iGR~Gpit~~lAlAgsla 507 (559)
T PRK05482 428 LVGTALALATPAGRAGISNPGPHGFSEVLYAYTSAAANNGSAFAGLGANTPFWNLTLGIAMLLGRFLPIIPVLAIAGSLA 507 (559)
T ss_pred HHHHHHHHHhccccccccCCCCCCHHHHHHHHHhhccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444 23222 232 58899999888888888754 588999999999999999885544433333444443
No 35
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=96.90 E-value=0.0024 Score=55.35 Aligned_cols=52 Identities=21% Similarity=0.468 Sum_probs=41.9
Q ss_pred cCCchhhhhhhhhhhcccccCccccC-----CccchhHHHH-HHHHhHHHHHHhHHHH
Q 047952 98 TNEILDSIYFCIVTMTTVGYGDLVPN-----SVVSKLLSCA-FVFTGMGLVGMFLSKA 149 (354)
Q Consensus 98 ~~~~~~a~yf~~~t~tTvGyGdi~P~-----t~~~r~~~~~-~~l~Gi~~~~~~~~~~ 149 (354)
+.+|..|+|+.+.++||.|+||..|. +..+.++.+. ..+.++.++.++++.+
T Consensus 143 f~~~~~s~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~nlliavi 200 (200)
T PF00520_consen 143 FDSFGESLYWLFQTMTGEGWGDVMPSCMSARSWLAVIFFISFIIIVSILLLNLLIAVI 200 (200)
T ss_dssp HSSHHHHHHHHHHHHTTTTCCCCHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccCCccccccccccccchhHhHHhhhhhhhHHHHHHHHHHhcC
Confidence 36899999999999999999999997 7788888844 4445667777777653
No 36
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.84 E-value=0.0056 Score=60.33 Aligned_cols=56 Identities=16% Similarity=0.285 Sum_probs=49.8
Q ss_pred chhhhhhhhhhhcccccCccccCCccchhHHHHHHHHhHHHHHHhHHHHHHHHHHHH
Q 047952 101 ILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGMFLSKAADYLVDKQ 157 (354)
Q Consensus 101 ~~~a~yf~~~t~tTvGyGdi~P~t~~~r~~~~~~~l~Gi~~~~~~~~~~~~~~~~~~ 157 (354)
|.-++||+.-|+||+| --..|.+...-.|.++=.++|+.+|+.+++.+|+.+....
T Consensus 184 Y~~S~YWStLTlTTiG-e~P~P~t~~ey~F~I~d~LiGvliFAtIvG~VGsmVtnmn 239 (536)
T KOG0500|consen 184 YLYSLYWSTLTLTTIG-EQPPPVTSSEYAFVIVDTLIGVLIFATIVGNVGSMVTNMN 239 (536)
T ss_pred HHHHHHHHhhhhhhcc-CCCCCCcCchhhHHHHHHHHHHHHHhhhhccHhHHHHhhh
Confidence 4569999999999998 4568889999999999999999999999999999987544
No 37
>TIGR00933 2a38 potassium uptake protein, TrkH family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system.
Probab=96.75 E-value=0.0057 Score=60.21 Aligned_cols=150 Identities=14% Similarity=0.198 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccCCCcCCchhhhhhhhhhhcccccCcccc------CCccchhHHHHHHHHhHHHHHH
Q 047952 71 VLVYLAAYLGGGSLSFYAVNSQIEGLKTNEILDSIYFCIVTMTTVGYGDLVP------NSVVSKLLSCAFVFTGMGLVGM 144 (354)
Q Consensus 71 ~~~~l~~~l~~g~~~~~~~e~~~~~~~~~~~~~a~yf~~~t~tTvGyGdi~P------~t~~~r~~~~~~~l~Gi~~~~~ 144 (354)
+..+-.+..++++..|+..+ . .++++|++.++.+++|-||.-... .++...++.++.+++|-.-+..
T Consensus 106 ~~~iy~~lt~l~~~~~~~~g------~-~~~~~Aif~avSa~~taGFs~~~~~~~~~~~~~~i~~v~~~lm~iGg~gF~v 178 (390)
T TIGR00933 106 IFVIYLLGTILLAVRFVLTG------W-MPLFDAIFHSISAFNNGGFSTHSDSSIGYFHDPSVNLVIAFLIILGGLGFTV 178 (390)
T ss_pred HHHHHHHHHHHHHHHHHHhc------c-hHHHHHHHHHHHHHhcCCcCCCCCcchhhccChHHHHHHHHHHHHHhcCHHH
Confidence 33333344444555555443 1 478999999999999999853322 1333455555555554333332
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhccccCCccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhc---------CCc
Q 047952 145 FLSKAADYLVDKQEILLVKALHRYQKVGPTDILKEIETNKVRYKCIIMLVLELVLILVGTIFLVVVEK---------MSF 215 (354)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~---------~~~ 215 (354)
.... +. . .+ +.. .++.+ ..+. .+ ...++++..+.+.+...|. ...
T Consensus 179 ~~~~----~~-------~---~~-~~~--~~l~~---~~~~--~~----~~~~~l~~~~~i~~~l~~~~~~~~~~~~~~~ 232 (390)
T TIGR00933 179 HYDV----YL-------L---LR-KRV--FKLSL---DTKV--RL----FVTFLLLAIGFILFLLLERGNTLYSYSFGAL 232 (390)
T ss_pred HHHH----HH-------H---cc-cCc--ceeec---CccH--HH----HHHHHHHHHHHHHHHHHHHcccccCCCHHHH
Confidence 2211 10 0 00 000 00111 0011 11 1122223344444444441 236
Q ss_pred cccceeeeeeecccccCCc--ccCCcCchHHHHHHHHHHH
Q 047952 216 VDAFYCVCSTITTLGYGDK--SFSTTGGRAFGVVWISSST 253 (354)
Q Consensus 216 ~da~yf~~vT~tTVGyGD~--~p~t~~gr~~~~~~i~~g~ 253 (354)
.++.++..++++|.||.-. .--++..+++.++.|++|-
T Consensus 233 ~~~~f~~~s~~~T~Gfst~d~~~~~~~~~lll~~lMfIGg 272 (390)
T TIGR00933 233 LLSAFFQSSTLRTAGFSTIDFAALPTATLVLLLLLMFIGG 272 (390)
T ss_pred HHHHHHHHhhccCCCccccChhhcCHHHHHHHHHHHHHcC
Confidence 7888999999999999754 2233456777777777763
No 38
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.74 E-value=0.0099 Score=58.61 Aligned_cols=55 Identities=22% Similarity=0.204 Sum_probs=48.0
Q ss_pred cceeeeeeecccccCCcccCCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047952 218 AFYCVCSTITTLGYGDKSFSTTGGRAFGVVWISSSTMTLAQFFLYVAEFNTEKRQK 273 (354)
Q Consensus 218 a~yf~~vT~tTVGyGD~~p~t~~gr~~~~~~i~~g~~~~~~~~~~i~~~~~~~~~~ 273 (354)
++|||..|+||+| --..|.+..--+|.++=.++|+.++|..++.++++++...+.
T Consensus 187 S~YWStLTlTTiG-e~P~P~t~~ey~F~I~d~LiGvliFAtIvG~VGsmVtnmna~ 241 (536)
T KOG0500|consen 187 SLYWSTLTLTTIG-EQPPPVTSSEYAFVIVDTLIGVLIFATIVGNVGSMVTNMNAA 241 (536)
T ss_pred HHHHHhhhhhhcc-CCCCCCcCchhhHHHHHHHHHHHHHhhhhccHhHHHHhhhHH
Confidence 7999999999997 234678888899999999999999999999999999876543
No 39
>KOG3827 consensus Inward rectifier K+ channel [Inorganic ion transport and metabolism]
Probab=96.56 E-value=0.011 Score=56.59 Aligned_cols=58 Identities=21% Similarity=0.123 Sum_probs=47.2
Q ss_pred CCccccceeeeeeecccccCCcccCC--cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047952 213 MSFVDAFYCVCSTITTLGYGDKSFST--TGGRAFGVVWISSSTMTLAQFFLYVAEFNTEK 270 (354)
Q Consensus 213 ~~~~da~yf~~vT~tTVGyGD~~p~t--~~gr~~~~~~i~~g~~~~~~~~~~i~~~~~~~ 270 (354)
.+|..||-|++-|=||||||--.++. +.+-+..++-.++|+.+-+..++.+...+...
T Consensus 111 ~sf~sAFLFSiETQtTIGYG~R~vTeeCP~aI~ll~~Q~I~g~ii~afm~G~i~aKiarP 170 (400)
T KOG3827|consen 111 HSFTSAFLFSIETQTTIGYGFRYVTEECPEAIFLLVLQSILGVIINAFMVGAIFAKIARP 170 (400)
T ss_pred cchhhhheeeeeeeeeeeccccccCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 35777899999999999999987665 45667777779999999999998887766654
No 40
>PRK10750 potassium transporter; Provisional
Probab=96.46 E-value=0.018 Score=58.19 Aligned_cols=43 Identities=14% Similarity=0.215 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccCCCcCCchhhhhhhhhhhcccccC
Q 047952 68 FKRVLVYLAAYLGGGSLSFYAVNSQIEGLKTNEILDSIYFCIVTMTTVGYG 118 (354)
Q Consensus 68 ~~~~~~~l~~~l~~g~~~~~~~e~~~~~~~~~~~~~a~yf~~~t~tTvGyG 118 (354)
.+.+..+.+.+.++++..++... .+++||+..++++++|-||.
T Consensus 182 a~~l~~iY~~lT~~~~~ll~~~G--------m~~fdAi~ha~saisTgGFs 224 (483)
T PRK10750 182 AKTLWLIYVLLTVACALALWFAG--------MDAFDAIGHSFSTIAIGGFS 224 (483)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC--------CcHHHHHHHHHHHHhccCcC
Confidence 44455555566666666665543 68999999999999999984
No 41
>COG0168 TrkG Trk-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=96.38 E-value=0.037 Score=56.16 Aligned_cols=153 Identities=14% Similarity=0.209 Sum_probs=77.3
Q ss_pred CchhhhhhhhhhhcccccC--cccc-----CCccchhHHHHHHHHhHHHHHHh--HHHHHHHHHHHHHHHHHHHHhhccc
Q 047952 100 EILDSIYFCIVTMTTVGYG--DLVP-----NSVVSKLLSCAFVFTGMGLVGMF--LSKAADYLVDKQEILLVKALHRYQK 170 (354)
Q Consensus 100 ~~~~a~yf~~~t~tTvGyG--di~P-----~t~~~r~~~~~~~l~Gi~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (354)
++.++++-+...+++.|+. |... -++..+++.++.|++|-.--+.. +..+.-.+.-..-+...++..+.+.
T Consensus 301 ~~~~~~f~~vs~~f~tg~trtgf~~vd~~~~~~~~~~~~~~~MfIGg~~gSTaGGIK~~r~~il~~~~~~~l~~~~~p~~ 380 (499)
T COG0168 301 SLRDAFFQSVSAIFQTGFTRTGFNTVDLSQWPPATLVLLMLLMFIGGSPGSTAGGIKTTRFAVLLKALKRELRRLGHPNA 380 (499)
T ss_pred HHHHHHHhHhHHheecccccCCCcccchhhcChHHHHHHHHHHHHcCCccccccchHHHHHHHHHHHHHHHHHHhcCccc
Confidence 3455555443334444443 2222 56677788888877765443332 2222222211111222222111111
Q ss_pred cCCccch-hhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCccccceeeeeeecccccCCcc--cCCcCc------
Q 047952 171 VGPTDIL-KEIETNKVRYKCIIMLVLELVLILVGTIFLVVVEKMSFVDAFYCVCSTITTLGYGDKS--FSTTGG------ 241 (354)
Q Consensus 171 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~da~yf~~vT~tTVGyGD~~--p~t~~g------ 241 (354)
..+.++. |++..+ ...+....+++.++++++++......+.-++.|+++=++.++.|||.|==. +.+..+
T Consensus 381 v~~~k~~~r~i~~~-~i~~~~~~~~l~~~~~~i~~~~l~~~~~~~~~~~lfEv~SA~gtVGlSlG~t~~~~~~~~~~~~~ 459 (499)
T COG0168 381 VISVKIFGRAIDED-TIRKALAFFFLYLLILIIGALILILTGYDPFIDALFEVVSAFGTVGLSLGITGDLASNFALPPLA 459 (499)
T ss_pred ceeeEEcCccCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHhhcCCCCCCCCCCCccccccCchH
Confidence 1111111 112222 222333444455556666666666666558999999999999999986432 223344
Q ss_pred hHHHHHHHHHHH
Q 047952 242 RAFGVVWISSST 253 (354)
Q Consensus 242 r~~~~~~i~~g~ 253 (354)
|+..++.|++|=
T Consensus 460 K~vli~~M~~GR 471 (499)
T COG0168 460 KLVLIALMLIGR 471 (499)
T ss_pred HHHHHHHHHhhc
Confidence 888888887773
No 42
>PF02386 TrkH: Cation transport protein; InterPro: IPR003445 This family consists of various potassium transport proteins (Trk) and V-type sodium ATP synthase subunit J or translocating ATPase J (3.6.1.34 from EC). These proteins are involved in active sodium up-take utilizing ATP in the process. TrkH from Escherichia coli is a hydrophobic membrane protein and determines the specificity and kinetics of cation transport by the TrK system in this organism []. This protein interacts with TrkA and requires TrkE for transport activity.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport; PDB: 3PJZ_A.
Probab=96.35 E-value=0.0095 Score=57.84 Aligned_cols=152 Identities=18% Similarity=0.236 Sum_probs=68.7
Q ss_pred CCchhhhhhhhhhhcccccC--ccccCCccchhHHHHHHHHhHHHHHHh--HHHHHHHHHHHHHHHHHHHHhhccccCCc
Q 047952 99 NEILDSIYFCIVTMTTVGYG--DLVPNSVVSKLLSCAFVFTGMGLVGMF--LSKAADYLVDKQEILLVKALHRYQKVGPT 174 (354)
Q Consensus 99 ~~~~~a~yf~~~t~tTvGyG--di~P~t~~~r~~~~~~~l~Gi~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (354)
.....+.++...+.+|.||. |+.--++..+++.++.|++|-.-.+.. +....-.+.-+..+...+....+ ...+.
T Consensus 175 ~~~~~~~f~~~s~~rTtGF~t~d~~~~~~~~~~l~~~lM~IGg~~gSTaGGiK~~r~~il~~~~~~~~~~~~p~-~~~~~ 253 (354)
T PF02386_consen 175 GSKRLSAFFQVSSLRTTGFSTVDISQWSPFTLLLLIILMFIGGSPGSTAGGIKITRFAILLKSIREIKRLIHPG-AVSPV 253 (354)
T ss_dssp HHHHHHHHHHHHTTTT----S---SS--THHHHHHHHHTTS-S-TTSS--SS-HHHHHHHHHHHHHHHHHH-SS-S----
T ss_pred HHHHHHHHHHHhhcCCcccCccChhhCCHHHHHHHHHHHHhcCccccccCCcceehhhHHHhhHHHHHHHhcCC-Cccce
Confidence 34566788888999999997 444446667777777777654433221 11111111111111122222221 11111
Q ss_pred cch-hhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCC-ccccceeeeeeecccccCCcc--cC-CcC---chHHHH
Q 047952 175 DIL-KEIETNKVRYKCIIMLVLELVLILVGTIFLVVVEKMS-FVDAFYCVCSTITTLGYGDKS--FS-TTG---GRAFGV 246 (354)
Q Consensus 175 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~-~~da~yf~~vT~tTVGyGD~~--p~-t~~---gr~~~~ 246 (354)
+.. |.++++..+ +....+++.++.+++++..+...+... +.|+++=++..++|||.+=-. |. +.. +|++.+
T Consensus 254 ~~~~r~i~~~~v~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lfe~~Sa~gtvGls~G~~~~~~s~~~~~~K~vli 332 (354)
T PF02386_consen 254 RFNGRRISEQTVR-KAFAFFFLYFIIVFISTLLLSLDGLDFSFFDALFEVISAFGTVGLSLGITTPNLSFSGPFSKLVLI 332 (354)
T ss_dssp -SSS---TTSHHH-HHCCHHHHHHHHHHHHHHHHHHHSS-H--HHHHHHHHHHCTT--S--SSS----SSS-HHHHHHHH
T ss_pred eecceeechhhhh-hHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhcCcCCCCCCCCCCccchhhHHHHHHH
Confidence 111 222222222 333334444555566666666666544 799999999999999876333 32 334 888888
Q ss_pred HHHHHH
Q 047952 247 VWISSS 252 (354)
Q Consensus 247 ~~i~~g 252 (354)
+.|++|
T Consensus 333 ~~M~~G 338 (354)
T PF02386_consen 333 FLMLLG 338 (354)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 888876
No 43
>KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.13 E-value=0.032 Score=56.30 Aligned_cols=80 Identities=21% Similarity=0.325 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHHhhh-cccCCCc-------CCchhhhhhhhhhhcccccCccccCCccchhHHHHHHHHhHHHHHHhH
Q 047952 75 LAAYLGGGSLSFYAVNS-QIEGLKT-------NEILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGMFL 146 (354)
Q Consensus 75 l~~~l~~g~~~~~~~e~-~~~~~~~-------~~~~~a~yf~~~t~tTvGyGdi~P~t~~~r~~~~~~~l~Gi~~~~~~~ 146 (354)
++..+.+-+++||+... +.-|.+- ..|.-++||+.-|++||| |.-.|.+...-+|..+--+.|+.+|++++
T Consensus 370 mlyilHinacvYY~~SayqglG~~rWVydg~Gn~YiRCyyfa~kt~~tiG-~~P~P~~~~E~Vf~~~~w~mGVFvFslli 448 (815)
T KOG0499|consen 370 LLYILHINACVYYWASAYQGLGTTRWVYDGEGNEYIRCYYFAVKTLITIG-GLPEPQTLFEIVFQLLNWFMGVFVFSLLI 448 (815)
T ss_pred HHHHHhhhHHHHHHHHhhcccccceeEEcCCCCceeeehhhHHHHHHHhc-CCCCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455666655542 2222222 478999999999999999 88899888888888887889999999999
Q ss_pred HHHHHHHHH
Q 047952 147 SKAADYLVD 155 (354)
Q Consensus 147 ~~~~~~~~~ 155 (354)
+.+.+.+..
T Consensus 449 GQmRDvi~a 457 (815)
T KOG0499|consen 449 GQMRDVIGA 457 (815)
T ss_pred HHHHHHHhh
Confidence 999988864
No 44
>KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.04 E-value=0.018 Score=58.10 Aligned_cols=104 Identities=12% Similarity=0.155 Sum_probs=70.7
Q ss_pred CCccccceeeeeeecccccCCcccCCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhhh
Q 047952 213 MSFVDAFYCVCSTITTLGYGDKSFSTTGGRAFGVVWISSSTMTLAQFFLYVAEFNTEKRQKALVNWVLTRKMTHVDLEAA 292 (354)
Q Consensus 213 ~~~~da~yf~~vT~tTVGyGD~~p~t~~gr~~~~~~i~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~l~~~ 292 (354)
..|+-++||++-|++|+| |-..|.+..-.+|..+=-+.|+.+++.+++.+-+.+......+. ..++.|.. ...
T Consensus 402 n~YiRCyyfa~kt~~tiG-~~P~P~~~~E~Vf~~~~w~mGVFvFslliGQmRDvi~aAt~nq~---~fr~~mD~---tl~ 474 (815)
T KOG0499|consen 402 NEYIRCYYFAVKTLITIG-GLPEPQTLFEIVFQLLNWFMGVFVFSLLIGQMRDVIGAATANQN---YFRACMDD---TLA 474 (815)
T ss_pred CceeeehhhHHHHHHHhc-CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHH---HHHHHHHH---HHH
Confidence 578899999999999999 77888887777888888889999999999999887765322111 11333322 112
Q ss_pred cccCCCc---cc--hHHHHHHHHHHcCCCCHHHHHH
Q 047952 293 DIDEDGV---VS--AAEFIIYKLKEMGKISQEDIAL 323 (354)
Q Consensus 293 ~l~~~g~---v~--~~e~v~~~l~~~~~~~~~~l~~ 323 (354)
-+++.+. |. ...|-.+.+..++.+++.++..
T Consensus 475 ym~~~~i~kevqnRVr~WyeyTW~sQr~LDEs~ll~ 510 (815)
T KOG0499|consen 475 YMNNYSIPKEVQNRVRTWYEYTWDSQRMLDESDLLK 510 (815)
T ss_pred HHHhcCCcHHHHHHHHHHHHhhhhhhccccHHHHHH
Confidence 2222111 11 2347777888888888887744
No 45
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=96.04 E-value=0.019 Score=49.61 Aligned_cols=50 Identities=26% Similarity=0.256 Sum_probs=39.1
Q ss_pred CCccccceeeeeeecccccCCcccC-----CcCchHHHHH-HHHHHHHHHHHHHHH
Q 047952 213 MSFVDAFYCVCSTITTLGYGDKSFS-----TTGGRAFGVV-WISSSTMTLAQFFLY 262 (354)
Q Consensus 213 ~~~~da~yf~~vT~tTVGyGD~~p~-----t~~gr~~~~~-~i~~g~~~~~~~~~~ 262 (354)
.++..++|+.+.++||.|+||..|. +..+.++.+. .++.++.+++++++.
T Consensus 144 ~~~~~s~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~nlliav 199 (200)
T PF00520_consen 144 DSFGESLYWLFQTMTGEGWGDVMPSCMSARSWLAVIFFISFIIIVSILLLNLLIAV 199 (200)
T ss_dssp SSHHHHHHHHHHHHTTTTCCCCHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccCCccccccccccccchhHhHHhhhhhhhHHHHHHHHHHhc
Confidence 4677899999999999999999997 6677887744 455555667776664
No 46
>TIGR00934 2a38euk potassium uptake protein, Trk family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system. This family is specific for the eukaryotic Trk system.
Probab=94.59 E-value=1.3 Score=47.01 Aligned_cols=64 Identities=13% Similarity=0.171 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc-----------CCccccceeeeeeecccccCCc--ccCCcCchHHHHHHHHHHHHH
Q 047952 191 IMLVLELVLILVGTIFLVVVEK-----------MSFVDAFYCVCSTITTLGYGDK--SFSTTGGRAFGVVWISSSTMT 255 (354)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~e~-----------~~~~da~yf~~vT~tTVGyGD~--~p~t~~gr~~~~~~i~~g~~~ 255 (354)
.++...+++++++.++|...|- ..+.+|++.++.+ =|-||.-+ .-.++...++.+++|++|..=
T Consensus 586 ill~tt~iL~~ig~ilf~lLE~nn~tl~~lp~g~Ril~aLFQSVst-RTAGFntVdls~Lspatlvl~iiLMyIGa~P 662 (800)
T TIGR00934 586 WLFFTLVGLNAIDLILFIILDWGSSVVDGLSKGIKVLNGLFQSVST-RTAGFTVVDLSQLHPAIQVSYMLMMYVSVLP 662 (800)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCccccccCCHHHHHHHHHHHhccc-ccccccccchHhcChhHHHHHHHHHHhccCC
Confidence 3445556677788888888872 1255677777665 56677632 233456677888888877644
No 47
>PF00060 Lig_chan: Ligand-gated ion channel; InterPro: IPR001320 The ability of synapses to modify their synaptic strength in response to activity is a fundamental property of the nervous system and may be an essential component of learning and memory. There are three classes of ionotropic glutamate receptor, namely NMDA (N-methyl-D-aspartate), AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazole-4-propionic acid) and kainate receptors. They are believed to play critical roles in synaptic plasticity. At many synapses in the brain, transient activation of NMDA receptors leads to a persistent modification in the strength of synaptic transmission mediated by AMPA receptors and kainate receptors can act as the induction trigger for long-term changes in synaptic transmission [].; GO: 0004970 ionotropic glutamate receptor activity, 0005234 extracellular-glutamate-gated ion channel activity, 0016020 membrane; PDB: 3FAT_A 3KFM_A 3KEI_A 3EN3_A 3EPE_B 3FAS_A 2F34_A 3C34_B 3S2V_A 3GBB_B ....
Probab=94.11 E-value=0.035 Score=46.22 Aligned_cols=60 Identities=12% Similarity=0.201 Sum_probs=45.7
Q ss_pred CCchhhhhhhhhhhcccccCccccCCccchhHHHHHHHHhHHHHHHhHHHHHHHHHHHHHH
Q 047952 99 NEILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGMFLSKAADYLVDKQEI 159 (354)
Q Consensus 99 ~~~~~a~yf~~~t~tTvGyGdi~P~t~~~r~~~~~~~l~Gi~~~~~~~~~~~~~~~~~~~~ 159 (354)
.++.+++|+.+.+++. +-++..|.+..+|++.++|.++.+.+.+...+.+++.+...+..
T Consensus 43 ~~~~~~~~~~~~~~~~-q~~~~~~~s~s~Ril~~~w~l~~lil~~~Yta~L~s~Lt~~~~~ 102 (148)
T PF00060_consen 43 FSLSNSFWYTFGTLLQ-QGSSIRPRSWSGRILLAFWWLFSLILIASYTANLTSFLTVPKYE 102 (148)
T ss_dssp HHHHHHHHHCCCCCHH-HHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHT
T ss_pred ccHHHHHHHHHHhhcc-ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcC
Confidence 5678899998888776 55679999999999999999999999999999999988765443
No 48
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=94.11 E-value=0.068 Score=45.22 Aligned_cols=57 Identities=28% Similarity=0.336 Sum_probs=45.5
Q ss_pred hhhcccCCCccchHHHHHHHHHHcCCCCHH--HHHHHHHHhhhcCCCCCCccChhhhhh
Q 047952 290 EAADIDEDGVVSAAEFIIYKLKEMGKISQE--DIALVMEEFQDLDFDQSGTLSPSDLFL 346 (354)
Q Consensus 290 ~~~~l~~~g~v~~~e~v~~~l~~~~~~~~~--~l~~i~~~f~~ld~~~~g~l~~~d~~~ 346 (354)
...|.+++|.++..||+...-........+ ..+.+.+.|...|.|++|.|+.+++.-
T Consensus 51 ~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~~~~el~eaF~~fD~d~~G~Is~~el~~ 109 (151)
T KOG0027|consen 51 KEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEASSEELKEAFRVFDKDGDGFISASELKK 109 (151)
T ss_pred HHhCCCCCCeEcHHHHHHHHHhhhcccccccccHHHHHHHHHHHccCCCCcCcHHHHHH
Confidence 345667899999999988876665554443 467889999999999999999999764
No 49
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=94.03 E-value=0.094 Score=37.37 Aligned_cols=56 Identities=23% Similarity=0.350 Sum_probs=41.1
Q ss_pred hhhcccCCCccchHHHHHHHHHHcCCCCHHHHHHHHHH-hhhcCCCCCCccChhhhh
Q 047952 290 EAADIDEDGVVSAAEFIIYKLKEMGKISQEDIALVMEE-FQDLDFDQSGTLSPSDLF 345 (354)
Q Consensus 290 ~~~~l~~~g~v~~~e~v~~~l~~~~~~~~~~l~~i~~~-f~~ld~~~~g~l~~~d~~ 345 (354)
..-|.+++|.++..|+....-.......++++++..+. |...|.|+||.|+.+|..
T Consensus 7 ~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~ 63 (66)
T PF13499_consen 7 KKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFL 63 (66)
T ss_dssp HHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHH
T ss_pred HHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHh
Confidence 45678899999988766554333334446677665544 999999999999999864
No 50
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=93.75 E-value=0.036 Score=32.00 Aligned_cols=22 Identities=27% Similarity=0.495 Sum_probs=18.8
Q ss_pred HHHHhhhcCCCCCCccChhhhh
Q 047952 324 VMEEFQDLDFDQSGTLSPSDLF 345 (354)
Q Consensus 324 i~~~f~~ld~~~~g~l~~~d~~ 345 (354)
+.+.|+.+|.|+||.|+.+|+.
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~ 22 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQ 22 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHH
Confidence 3457999999999999999874
No 51
>PF00060 Lig_chan: Ligand-gated ion channel; InterPro: IPR001320 The ability of synapses to modify their synaptic strength in response to activity is a fundamental property of the nervous system and may be an essential component of learning and memory. There are three classes of ionotropic glutamate receptor, namely NMDA (N-methyl-D-aspartate), AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazole-4-propionic acid) and kainate receptors. They are believed to play critical roles in synaptic plasticity. At many synapses in the brain, transient activation of NMDA receptors leads to a persistent modification in the strength of synaptic transmission mediated by AMPA receptors and kainate receptors can act as the induction trigger for long-term changes in synaptic transmission [].; GO: 0004970 ionotropic glutamate receptor activity, 0005234 extracellular-glutamate-gated ion channel activity, 0016020 membrane; PDB: 3FAT_A 3KFM_A 3KEI_A 3EN3_A 3EPE_B 3FAS_A 2F34_A 3C34_B 3S2V_A 3GBB_B ....
Probab=93.32 E-value=0.05 Score=45.29 Aligned_cols=57 Identities=18% Similarity=0.239 Sum_probs=44.6
Q ss_pred CCccccceeeeeeecccccCCcccCCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047952 213 MSFVDAFYCVCSTITTLGYGDKSFSTTGGRAFGVVWISSSTMTLAQFFLYVAEFNTEK 270 (354)
Q Consensus 213 ~~~~da~yf~~vT~tTVGyGD~~p~t~~gr~~~~~~i~~g~~~~~~~~~~i~~~~~~~ 270 (354)
.++.+++|+++.+++. +-++..|.+..+|++..+|.++++++.+...+.+++.++..
T Consensus 43 ~~~~~~~~~~~~~~~~-q~~~~~~~s~s~Ril~~~w~l~~lil~~~Yta~L~s~Lt~~ 99 (148)
T PF00060_consen 43 FSLSNSFWYTFGTLLQ-QGSSIRPRSWSGRILLAFWWLFSLILIASYTANLTSFLTVP 99 (148)
T ss_dssp HHHHHHHHHCCCCCHH-HHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred ccHHHHHHHHHHhhcc-ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3467789999988877 56678999999999999999999999999999999998854
No 52
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=92.88 E-value=0.063 Score=32.17 Aligned_cols=23 Identities=22% Similarity=0.404 Sum_probs=19.8
Q ss_pred HHHHhhhcCCCCCCccChhhhhh
Q 047952 324 VMEEFQDLDFDQSGTLSPSDLFL 346 (354)
Q Consensus 324 i~~~f~~ld~~~~g~l~~~d~~~ 346 (354)
+.+.|+..|.|+||.|+.+|+.-
T Consensus 2 ~~~~F~~~D~d~dG~I~~~Ef~~ 24 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDFEEFKE 24 (29)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHH
T ss_pred HHHHHHHHCCCCCCcCCHHHHHH
Confidence 46679999999999999999753
No 53
>PRK05702 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=92.04 E-value=3.8 Score=39.94 Aligned_cols=51 Identities=18% Similarity=0.249 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhhhcccCCC
Q 047952 243 AFGVVWISSSTMTLAQFFLYVAEFNTEKRQKALVNWVLTRKMTHVDLEAADIDEDG 298 (354)
Q Consensus 243 ~~~~~~i~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~l~~~~l~~~g 298 (354)
+...++.++..+++.+++-.+.++..++++ +.++-+|++.|++.+-.+.+|
T Consensus 186 ~~~~~~~l~~~~~~~~~via~~D~~~qr~~-----~~k~lkMskqEVKdE~Ke~EG 236 (359)
T PRK05702 186 ALDLVLKLLLLVVLALLVIAAIDVPFQRWQ-----YLKKLKMTKQEVKDEHKQSEG 236 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHhCCCCHHHHHHHHHhccC
Confidence 444444455555555556666777776533 344668888887766555444
No 54
>PF02386 TrkH: Cation transport protein; InterPro: IPR003445 This family consists of various potassium transport proteins (Trk) and V-type sodium ATP synthase subunit J or translocating ATPase J (3.6.1.34 from EC). These proteins are involved in active sodium up-take utilizing ATP in the process. TrkH from Escherichia coli is a hydrophobic membrane protein and determines the specificity and kinetics of cation transport by the TrK system in this organism []. This protein interacts with TrkA and requires TrkE for transport activity.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport; PDB: 3PJZ_A.
Probab=92.00 E-value=0.12 Score=50.09 Aligned_cols=46 Identities=15% Similarity=0.297 Sum_probs=25.3
Q ss_pred CCchhhhhhhhhhhcccccCc----cccCC--ccchhHHHHHHHHhHHHHHH
Q 047952 99 NEILDSIYFCIVTMTTVGYGD----LVPNS--VVSKLLSCAFVFTGMGLVGM 144 (354)
Q Consensus 99 ~~~~~a~yf~~~t~tTvGyGd----i~P~t--~~~r~~~~~~~l~Gi~~~~~ 144 (354)
.++++|++.++.+++|-|+.- +.|-. +...++.++.+++|-.-+..
T Consensus 52 ~~~~~aifhs~Sa~~t~GFs~~~~sl~~f~~~~~i~~i~~~lmi~Gg~~F~~ 103 (354)
T PF02386_consen 52 MPLFDAIFHSMSAFSTGGFSPFSDSLAPFNSNPFIEIIIIILMILGGLGFPL 103 (354)
T ss_dssp --SHHHHTTTHHHHTT----SSTTGGGSS---TTHHHHHHHHHHHHTS-HHH
T ss_pred CcHHHHHHHHHHHHhcCCceecCCceecccccHHHHHHHHHHHHHhcCCHHH
Confidence 578999999999999999832 23332 35556666666655443333
No 55
>TIGR00934 2a38euk potassium uptake protein, Trk family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system. This family is specific for the eukaryotic Trk system.
Probab=91.26 E-value=0.36 Score=51.05 Aligned_cols=174 Identities=14% Similarity=0.183 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcc---cCCCc-CCchhhhhhhhhhhcccccC--ccccCCccchhHHHHHHHHhHHHHH
Q 047952 70 RVLVYLAAYLGGGSLSFYAVNSQI---EGLKT-NEILDSIYFCIVTMTTVGYG--DLVPNSVVSKLLSCAFVFTGMGLVG 143 (354)
Q Consensus 70 ~~~~~l~~~l~~g~~~~~~~e~~~---~~~~~-~~~~~a~yf~~~t~tTvGyG--di~P~t~~~r~~~~~~~l~Gi~~~~ 143 (354)
.+++..+++++++++.|+..|-.. .+-+. ..+.+|++-++++ -|.||. |+.-.++...++.++.|++|..=++
T Consensus 586 ill~tt~iL~~ig~ilf~lLE~nn~tl~~lp~g~Ril~aLFQSVst-RTAGFntVdls~Lspatlvl~iiLMyIGa~Pta 664 (800)
T TIGR00934 586 WLFFTLVGLNAIDLILFIILDWGSSVVDGLSKGIKVLNGLFQSVST-RTAGFTVVDLSQLHPAIQVSYMLMMYVSVLPLA 664 (800)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCccccccCCHHHHHHHHHHHhccc-ccccccccchHhcChhHHHHHHHHHHhccCCcc
Confidence 455556677788888888888421 11111 2467777777665 777886 4455577778888888887654433
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHhhccccCCccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhc----------C
Q 047952 144 MFLSKAADYLVDKQEILLVKALHRYQKVGPTDILKEIETNKVRYKCIIMLVLELVLILVGTIFLVVVEK----------M 213 (354)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~----------~ 213 (354)
..+... +...+.... .. ..+.++... +...+.+... .+...+.+.+.+++++.++....|+ .
T Consensus 665 ggIK~T-Tvyee~sLg-i~-~~~g~~~~~-~~~~rsi~~~----~irrqLs~dlw~I~l~~flI~I~E~~~l~~~~~~~f 736 (800)
T TIGR00934 665 ISIRRT-NVYEEQSLG-LY-NEENEEHEG-ESSTKSFIGA----HLRRQLSFDLWYIFLGLFIICICEGRKIQDPDPPNF 736 (800)
T ss_pred ceeece-eeeheehee-ee-eccCCcccc-ccccccccHH----HHHHHHHHHHHHHHHHHHHHHHhcCccccccccccc
Confidence 322110 000000000 00 001110000 0000111111 1112222234455566667777775 3
Q ss_pred CccccceeeeeeecccccCCcccC---------CcCchHHHHHHHHHH
Q 047952 214 SFVDAFYCVCSTITTLGYGDKSFS---------TTGGRAFGVVWISSS 252 (354)
Q Consensus 214 ~~~da~yf~~vT~tTVGyGD~~p~---------t~~gr~~~~~~i~~g 252 (354)
++++.++=++.-..|||+.-=.|. +..||++.++.|+.|
T Consensus 737 s~f~ILFEVVSAyGTVGLSlG~p~~~~SfSg~ls~~sKLVII~vM~~G 784 (800)
T TIGR00934 737 NVFNILFEVVSAYGTVGLSLGYSCSNYSFSGQFTTLSKLVIIAMLIRG 784 (800)
T ss_pred cHHHHHhhhhhhccceeecCCCCCcccccCCCCCcchHHHHhHHHHcc
Confidence 556667666667777776544332 457888888888766
No 56
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=90.22 E-value=0.16 Score=30.57 Aligned_cols=23 Identities=26% Similarity=0.338 Sum_probs=19.0
Q ss_pred HHHHhhhcCCCCCCccChhhhhh
Q 047952 324 VMEEFQDLDFDQSGTLSPSDLFL 346 (354)
Q Consensus 324 i~~~f~~ld~~~~g~l~~~d~~~ 346 (354)
+.+.|...|.|+||.|+.+|+.-
T Consensus 2 l~~~F~~~D~d~dG~I~~~el~~ 24 (31)
T PF13405_consen 2 LREAFKMFDKDGDGFIDFEELRA 24 (31)
T ss_dssp HHHHHHHH-TTSSSEEEHHHHHH
T ss_pred HHHHHHHHCCCCCCcCcHHHHHH
Confidence 56779999999999999999753
No 57
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=90.06 E-value=15 Score=39.08 Aligned_cols=56 Identities=18% Similarity=0.136 Sum_probs=34.1
Q ss_pred Cccccceeeeeee--cccccCCcccCCc-----CchHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 047952 214 SFVDAFYCVCSTI--TTLGYGDKSFSTT-----GGRAFGV-VWISSSTMTLAQFFLYVAEFNTE 269 (354)
Q Consensus 214 ~~~da~yf~~vT~--tTVGyGD~~p~t~-----~gr~~~~-~~i~~g~~~~~~~~~~i~~~~~~ 269 (354)
+..|++.-.+.|+ .||||||..-... .+++..+ +.++.-+.++-++++.+++....
T Consensus 586 ~~~ds~~~~~l~lf~ftig~~dl~~~~~~~~~~~~kilfv~y~ilv~ILllNMLIAMMg~Ty~~ 649 (782)
T KOG3676|consen 586 NPYDSFSTFLLTLFEFTIGMGDLEACENTDYPVLFKILFVAYMILVTILLLNMLIAMMGNTYET 649 (782)
T ss_pred ChhhHHHHHHHHHHHHhhhhhhhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 3456655555555 6899999865443 3454433 34555666666777777666554
No 58
>PRK12721 secretion system apparatus protein SsaU; Reviewed
Probab=89.23 E-value=6.3 Score=38.25 Aligned_cols=51 Identities=10% Similarity=0.182 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhhhcccCCC
Q 047952 243 AFGVVWISSSTMTLAQFFLYVAEFNTEKRQKALVNWVLTRKMTHVDLEAADIDEDG 298 (354)
Q Consensus 243 ~~~~~~i~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~l~~~~l~~~g 298 (354)
+...++.+++.+++.+++-.+.++..++++ +..+-+|++.|++.+-.+.+|
T Consensus 179 ~~~~~~~l~~~~~~~~~via~~D~~~qr~~-----~~k~lkMskqEvKdE~Ke~EG 229 (349)
T PRK12721 179 VSTLIFWLWGGLLACYLVFGILDYSFQRYK-----IMKQLKMSKDDVKQEYKDSEG 229 (349)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHCCCCHHHHHHHHHhccC
Confidence 334444444555555555566777776533 334668888887766555444
No 59
>PRK13109 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=88.92 E-value=8.3 Score=37.53 Aligned_cols=50 Identities=16% Similarity=0.286 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhhhcccCCC
Q 047952 244 FGVVWISSSTMTLAQFFLYVAEFNTEKRQKALVNWVLTRKMTHVDLEAADIDEDG 298 (354)
Q Consensus 244 ~~~~~i~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~l~~~~l~~~g 298 (354)
...+..+++.++..+++-.+.++..++++ +..+-+|++.|.+.+-.+.+|
T Consensus 189 ~~~~~~l~~~~~~~~~via~~D~~~q~~~-----~~k~lkMSkqEVKdE~Ke~EG 238 (358)
T PRK13109 189 LTVAIRLVSAVAIATIVLVALDLVWARFH-----WRRSLRMTKQEIKDEHKQAEG 238 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHCCCCHHHHHHHHHhccC
Confidence 33334444445555555666777775533 334568888877766555444
No 60
>KOG4440 consensus NMDA selective glutamate-gated ion channel receptor subunit GRIN1 [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=88.76 E-value=1.1 Score=45.97 Aligned_cols=58 Identities=19% Similarity=0.352 Sum_probs=53.2
Q ss_pred CcCCchhhhhhhhhhhcccccCccccCCccchhHHHHHHHHhHHHHHHhHHHHHHHHH
Q 047952 97 KTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGMFLSKAADYLV 154 (354)
Q Consensus 97 ~~~~~~~a~yf~~~t~tTvGyGdi~P~t~~~r~~~~~~~l~Gi~~~~~~~~~~~~~~~ 154 (354)
+..++..|+||+--.+..-|-|+-.|.+--.|++.++|+=+.+++++...++++.+++
T Consensus 610 ~alnlssAmWF~WGVLLNSGigEgtPRSfSARvLGmVWaGFaMIiVASYTANLAAFLV 667 (993)
T KOG4440|consen 610 DALNLSSAMWFSWGVLLNSGIGEGTPRSFSARVLGMVWAGFAMIIVASYTANLAAFLV 667 (993)
T ss_pred hhcchhhhHHHHhHhhhccccCCCCCcchhHHHHHHHHhhhheeeehhhhhhhhhhee
Confidence 3478999999999999999999999999999999999999999999999999988775
No 61
>PRK09108 type III secretion system protein HrcU; Validated
Probab=88.48 E-value=7.6 Score=37.73 Aligned_cols=51 Identities=8% Similarity=0.210 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhhhcccCCC
Q 047952 243 AFGVVWISSSTMTLAQFFLYVAEFNTEKRQKALVNWVLTRKMTHVDLEAADIDEDG 298 (354)
Q Consensus 243 ~~~~~~i~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~l~~~~l~~~g 298 (354)
++..+..++..+++.+++-.+.++..++++ +..+-||++.|++.+-.+.+|
T Consensus 181 ~~~~~~~l~~~~~~~~~via~~D~~~qr~~-----~~k~lkMSkqEvK~E~K~~EG 231 (353)
T PRK09108 181 LWTVLMKLLAVAAGVFLLVGAADWKIQRWL-----FIRDNRMSKDEVKREHKESEG 231 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHCCCCHHHHHHHHHhccC
Confidence 334444444455555555666777775533 334668888887776555444
No 62
>COG0168 TrkG Trk-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=87.96 E-value=2.6 Score=42.92 Aligned_cols=40 Identities=15% Similarity=0.326 Sum_probs=26.5
Q ss_pred CCchhhhhhhhhhhcccccCccccC-------CccchhHHHHHHHHhH
Q 047952 99 NEILDSIYFCIVTMTTVGYGDLVPN-------SVVSKLLSCAFVFTGM 139 (354)
Q Consensus 99 ~~~~~a~yf~~~t~tTvGyGdi~P~-------t~~~r~~~~~~~l~Gi 139 (354)
.++.||++.++++++|-||- ..+. ++.=.+++++++++|=
T Consensus 197 m~~~dAi~hs~Sa~~ngGFS-~~~~Si~~f~~~~~i~~i~~~liI~Gg 243 (499)
T COG0168 197 MPLFDAIFHSMSAFNNGGFS-THDASIGYFNGSPLINLIITILIILGG 243 (499)
T ss_pred CCHHHHHHHHHHHhhcCCCC-CCcchhhhcccChhHHHHHHHHHHHhc
Confidence 47888999999999999986 4433 2333444555555443
No 63
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=87.65 E-value=0.57 Score=36.28 Aligned_cols=31 Identities=35% Similarity=0.369 Sum_probs=27.1
Q ss_pred CCHHHHHHHHHHhhhcCCCCCCccChhhhhh
Q 047952 316 ISQEDIALVMEEFQDLDFDQSGTLSPSDLFL 346 (354)
Q Consensus 316 ~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~~ 346 (354)
++++++..+.+.|..+|.|++|.|+.+|+.-
T Consensus 4 ls~~~~~~l~~~F~~~D~d~~G~Is~~el~~ 34 (96)
T smart00027 4 ISPEDKAKYEQIFRSLDKNQDGTVTGAQAKP 34 (96)
T ss_pred CCHHHHHHHHHHHHHhCCCCCCeEeHHHHHH
Confidence 5778899999999999999999999998754
No 64
>PRK12468 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=87.14 E-value=11 Score=37.05 Aligned_cols=43 Identities=12% Similarity=0.084 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhhhcccCCC
Q 047952 251 SSTMTLAQFFLYVAEFNTEKRQKALVNWVLTRKMTHVDLEAADIDEDG 298 (354)
Q Consensus 251 ~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~l~~~~l~~~g 298 (354)
+..+++.+++-.+.+++.++++ +.++-+|++.|.+.+-.+.+|
T Consensus 194 ~~~~~~~~~via~~D~~~qr~~-----~~k~lkMSkqEvKdE~K~~EG 236 (386)
T PRK12468 194 GLVVVLGLSPMVGFDVFYQITS-----HIKKLRMTKQDIRDEFKNQEG 236 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----HHHHCCCCHHHHHHHHHhccC
Confidence 3334444455556777775532 334567887777666555433
No 65
>TIGR00328 flhB flagellar biosynthetic protein FlhB. FlhB and its functionally equivalent orthologs, from among a larger superfamily of proteins involved in type III protein export systems, are specifically involved in flagellar protein export. The seed members are restricted and the trusted cutoff is set high such that the proteins gathered by this model play roles specifically related to flagellar structures. Full-length homologs scoring below the trusted cutoff are involved in peptide export but not necessarily in the creation of flagella.
Probab=86.72 E-value=12 Score=36.19 Aligned_cols=51 Identities=14% Similarity=0.178 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhhhcccCCC
Q 047952 243 AFGVVWISSSTMTLAQFFLYVAEFNTEKRQKALVNWVLTRKMTHVDLEAADIDEDG 298 (354)
Q Consensus 243 ~~~~~~i~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~l~~~~l~~~g 298 (354)
+...++.++..+++++++-.+.++..++++ +.++-+|++.|++.+-.+.+|
T Consensus 179 ~~~~~~~l~~~~~~~~~via~~D~~~qr~~-----~~k~lrMskqEVKdE~K~~EG 229 (347)
T TIGR00328 179 FLDIAKSLLILVLLLLLVIAVFDYFFQRWQ-----YIKSLKMTKQEVKDELKQSEG 229 (347)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHhCCCCHHHHHHHHHhccC
Confidence 334444444455555555666777775532 334668888887776655444
No 66
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=86.24 E-value=5 Score=42.41 Aligned_cols=90 Identities=23% Similarity=0.338 Sum_probs=54.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhhcccCC-----------CcCCchhhhhhhhhhh--cccccCccccC--C---ccc
Q 047952 66 PNFKRVLVYLAAYLGGGSLSFYAVNSQIEGL-----------KTNEILDSIYFCIVTM--TTVGYGDLVPN--S---VVS 127 (354)
Q Consensus 66 ~~~~~~~~~l~~~l~~g~~~~~~~e~~~~~~-----------~~~~~~~a~yf~~~t~--tTvGyGdi~P~--t---~~~ 127 (354)
..+.+++++..++++-.+-.||..-...++. ...+..|++.-.+.++ .|+||||..-. + ..+
T Consensus 541 ~DL~RF~~IY~Vfl~GFsqAfy~if~~~~~~~~~~~~~~~~~~m~~~~ds~~~~~l~lf~ftig~~dl~~~~~~~~~~~~ 620 (782)
T KOG3676|consen 541 GDLFRFLLIYLVFLVGFSQAFYSIFQTCDRDSSPNDKNVESNPMCNPYDSFSTFLLTLFEFTIGMGDLEACENTDYPVLF 620 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccccCChhhHHHHHHHHHHHHhhhhhhhhhcccccchHHH
Confidence 3444555555566665566666654333222 2345667655444444 79999997654 3 356
Q ss_pred hhHHHHHHH-HhHHHHHHhHHHHHHHHHH
Q 047952 128 KLLSCAFVF-TGMGLVGMFLSKAADYLVD 155 (354)
Q Consensus 128 r~~~~~~~l-~Gi~~~~~~~~~~~~~~~~ 155 (354)
+++.++|++ .-+.++-++|+.+++-..+
T Consensus 621 kilfv~y~ilv~ILllNMLIAMMg~Ty~~ 649 (782)
T KOG3676|consen 621 KILFVAYMILVTILLLNMLIAMMGNTYET 649 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 776666666 4566777788888776543
No 67
>TIGR01404 FlhB_rel_III type III secretion protein, YscU/HrpY family. This model represents one of several families of proteins related to bacterial flagellar biosynthesis proteins and involved in bacterial type III protein secretion systems. This family is homologous to, but distinguished from, flagellar biosynthetic protein FlhB (TIGRFAMs model TIGR00328). This model may not identify all type III secretion system FlhB homologs.
Probab=85.56 E-value=12 Score=36.22 Aligned_cols=51 Identities=10% Similarity=0.089 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhhhcccCCC
Q 047952 243 AFGVVWISSSTMTLAQFFLYVAEFNTEKRQKALVNWVLTRKMTHVDLEAADIDEDG 298 (354)
Q Consensus 243 ~~~~~~i~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~l~~~~l~~~g 298 (354)
++..++.++..+++.+++-.+.++..++++ +..+-+|++.|++.+-.+.+|
T Consensus 178 ~~~~~~~l~~~~~~~~~via~~D~~~qr~~-----~~k~lkMskqEvKdE~Ke~EG 228 (342)
T TIGR01404 178 VGELLKLLILVCLGFFLVVGLADFAFQRYL-----FMKDLKMSKDEVKREYKEQEG 228 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHhCCCCHHHHHHHHHhccC
Confidence 344444445555555555666777775532 334668888887776555444
No 68
>PRK06298 type III secretion system protein; Validated
Probab=85.55 E-value=14 Score=36.01 Aligned_cols=43 Identities=12% Similarity=0.247 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhhhcccCCC
Q 047952 251 SSTMTLAQFFLYVAEFNTEKRQKALVNWVLTRKMTHVDLEAADIDEDG 298 (354)
Q Consensus 251 ~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~l~~~~l~~~g 298 (354)
+..+++.+++-.+.++..++++ +..+-+|++.|++.+-.+.+|
T Consensus 188 ~~~~~~~~~via~~D~~~qr~~-----~~k~lkMSkqEvKdE~K~~EG 230 (356)
T PRK06298 188 VTSIGIFFLVVAVLDLVYQRHN-----FAKELKMEKFEVKQEFKDTEG 230 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----HHHHCCCCHHHHHHHHHhccC
Confidence 3333444555556677665432 334668888877766555443
No 69
>KOG1052 consensus Glutamate-gated kainate-type ion channel receptor subunit GluR5 and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=85.09 E-value=2.2 Score=44.91 Aligned_cols=55 Identities=9% Similarity=0.170 Sum_probs=44.2
Q ss_pred ccccceeeeeeecccccCCcccCCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047952 215 FVDAFYCVCSTITTLGYGDKSFSTTGGRAFGVVWISSSTMTLAQFFLYVAEFNTEK 270 (354)
Q Consensus 215 ~~da~yf~~vT~tTVGyGD~~p~t~~gr~~~~~~i~~g~~~~~~~~~~i~~~~~~~ 270 (354)
...++|+++.++..-|-+ ..|.+..+|++..+|.++++++.+..++.+++.++..
T Consensus 382 ~~~~~~~~~~~~~~q~~~-~~p~~~~~Rll~~~w~~~~lil~ssYTa~L~a~Lt~~ 436 (656)
T KOG1052|consen 382 LLNCLWLTVGSLLQQGSD-EIPRSLSTRLLLGAWWLFVLILISSYTANLTAFLTVP 436 (656)
T ss_pred cccchhhhhHHHhccCCC-ccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 334455666656666644 8899999999999999999999999999999988854
No 70
>KOG1052 consensus Glutamate-gated kainate-type ion channel receptor subunit GluR5 and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=84.81 E-value=2.9 Score=43.99 Aligned_cols=57 Identities=16% Similarity=0.317 Sum_probs=48.8
Q ss_pred cCCchhhhhhhhhhhcccccCccccCCccchhHHHHHHHHhHHHHHHhHHHHHHHHHH
Q 047952 98 TNEILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGMFLSKAADYLVD 155 (354)
Q Consensus 98 ~~~~~~a~yf~~~t~tTvGyGdi~P~t~~~r~~~~~~~l~Gi~~~~~~~~~~~~~~~~ 155 (354)
.|+..+++|+++.++..-|-+ ..|.+..+|++..+|.++++.+.+...+++++.+..
T Consensus 379 ~~~~~~~~~~~~~~~~~q~~~-~~p~~~~~Rll~~~w~~~~lil~ssYTa~L~a~Lt~ 435 (656)
T KOG1052|consen 379 LFSLLNCLWLTVGSLLQQGSD-EIPRSLSTRLLLGAWWLFVLILISSYTANLTAFLTV 435 (656)
T ss_pred EeecccchhhhhHHHhccCCC-ccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 366677888888888887755 999999999999999999999999999998888753
No 71
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=84.76 E-value=1.5 Score=29.74 Aligned_cols=45 Identities=29% Similarity=0.533 Sum_probs=33.6
Q ss_pred CCccchHHHHHHHHHHcC-C-CCHHHHHHHHHHhhhcCCCCCCccChhhhh
Q 047952 297 DGVVSAAEFIIYKLKEMG-K-ISQEDIALVMEEFQDLDFDQSGTLSPSDLF 345 (354)
Q Consensus 297 ~g~v~~~e~v~~~l~~~~-~-~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~ 345 (354)
+|.++..|+.... ...| . .++++++. -|...|.|++|.|+.+|+.
T Consensus 2 ~G~i~~~~~~~~l-~~~g~~~~s~~e~~~---l~~~~D~~~~G~I~~~EF~ 48 (54)
T PF13833_consen 2 DGKITREEFRRAL-SKLGIKDLSEEEVDR---LFREFDTDGDGYISFDEFI 48 (54)
T ss_dssp SSEEEHHHHHHHH-HHTTSSSSCHHHHHH---HHHHHTTSSSSSEEHHHHH
T ss_pred cCEECHHHHHHHH-HHhCCCCCCHHHHHH---HHHhcccCCCCCCCHHHHH
Confidence 5778877777666 6555 4 67777655 5677799999999999865
No 72
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=83.52 E-value=1 Score=38.12 Aligned_cols=32 Identities=25% Similarity=0.309 Sum_probs=29.0
Q ss_pred CCHHHHHHHHHHhhhcCCCCCCccChhhhhhc
Q 047952 316 ISQEDIALVMEEFQDLDFDQSGTLSPSDLFLA 347 (354)
Q Consensus 316 ~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~~~ 347 (354)
.++..|++.++.|.-+|+|.||.|+.+||.-.
T Consensus 26 f~q~QIqEfKEAF~~mDqnrDG~IdkeDL~d~ 57 (171)
T KOG0031|consen 26 FDQSQIQEFKEAFNLMDQNRDGFIDKEDLRDM 57 (171)
T ss_pred hhHHHHHHHHHHHHHHhccCCCcccHHHHHHH
Confidence 46889999999999999999999999998753
No 73
>KOG1053 consensus Glutamate-gated NMDA-type ion channel receptor subunit GRIN2A and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=83.33 E-value=8.8 Score=41.25 Aligned_cols=57 Identities=14% Similarity=0.357 Sum_probs=45.3
Q ss_pred cCCchhhhhhhhhhhcccccCcccc----CCccchhHHHHHHHHhHHHHHHhHHHHHHHHHHHHH
Q 047952 98 TNEILDSIYFCIVTMTTVGYGDLVP----NSVVSKLLSCAFVFTGMGLVGMFLSKAADYLVDKQE 158 (354)
Q Consensus 98 ~~~~~~a~yf~~~t~tTvGyGdi~P----~t~~~r~~~~~~~l~Gi~~~~~~~~~~~~~~~~~~~ 158 (354)
..++..|+|.+-.-+ |+..+| +...+|+...+|+++++.+++..+++++.+++....
T Consensus 607 ~FtigkaiwllwaLv----FnnsVpv~nPKgtTskiMv~VWAfFavifLAsYTANLAAfMIqE~~ 667 (1258)
T KOG1053|consen 607 SFTIGKAIWLLWALV----FNNSVPVENPKGTTSKIMVLVWAFFAVIFLASYTANLAAFMIQEEY 667 (1258)
T ss_pred ceehhhHHHHHHHHH----hCCCcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 467888888665544 566655 466799999999999999999999999998876443
No 74
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=83.30 E-value=0.67 Score=32.83 Aligned_cols=24 Identities=29% Similarity=0.404 Sum_probs=21.2
Q ss_pred HHHHHhhhcCCCCCCccChhhhhh
Q 047952 323 LVMEEFQDLDFDQSGTLSPSDLFL 346 (354)
Q Consensus 323 ~i~~~f~~ld~~~~g~l~~~d~~~ 346 (354)
++.+.|..+|.|++|.|+.+|+..
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~ 24 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRR 24 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHH
Confidence 467889999999999999999865
No 75
>PLN03223 Polycystin cation channel protein; Provisional
Probab=82.76 E-value=33 Score=38.88 Aligned_cols=31 Identities=10% Similarity=0.041 Sum_probs=20.2
Q ss_pred CchHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 047952 240 GGRAFGVVW-ISSSTMTLAQFFLYVAEFNTEK 270 (354)
Q Consensus 240 ~gr~~~~~~-i~~g~~~~~~~~~~i~~~~~~~ 270 (354)
.|.+|.+.| +++.++++-++++++.+.+.+-
T Consensus 1394 LGPIYFfSFILLV~FILLNMFIAII~DSFsEV 1425 (1634)
T PLN03223 1394 VGMIYFYSYNIFVFMILFNFLLAIICDAFGEV 1425 (1634)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555444 4456677778888888877764
No 76
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=82.60 E-value=2.1 Score=37.90 Aligned_cols=57 Identities=19% Similarity=0.299 Sum_probs=39.8
Q ss_pred hhhcccCCCccchHHH---HHHHHHHcCC----CCHHHHHHH-HHHhhhcCCCCCCccChhhhhh
Q 047952 290 EAADIDEDGVVSAAEF---IIYKLKEMGK----ISQEDIALV-MEEFQDLDFDQSGTLSPSDLFL 346 (354)
Q Consensus 290 ~~~~l~~~g~v~~~e~---v~~~l~~~~~----~~~~~l~~i-~~~f~~ld~~~~g~l~~~d~~~ 346 (354)
..-|++++|.|++.|. +.+.+..++. ..++..++. -.-|...|.|+||.|+.+|...
T Consensus 107 ~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~n~Dg~lT~eef~~ 171 (193)
T KOG0044|consen 107 RLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKMDKNKDGKLTLEEFIE 171 (193)
T ss_pred eeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHcCCCCCCcccHHHHHH
Confidence 5678899999998763 3444555554 223333333 3459999999999999999764
No 77
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=81.76 E-value=4.5 Score=31.11 Aligned_cols=51 Identities=14% Similarity=0.196 Sum_probs=33.7
Q ss_pred hhcccCCC-ccchHHHHHHHHHH------cCCCCHHHHHHHHHHhhhcCCCCCCccChhhhh
Q 047952 291 AADIDEDG-VVSAAEFIIYKLKE------MGKISQEDIALVMEEFQDLDFDQSGTLSPSDLF 345 (354)
Q Consensus 291 ~~~l~~~g-~v~~~e~v~~~l~~------~~~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~ 345 (354)
.++.+++| .++..|.... +.+ .+..++++++++ +.++|.|+||.++-++..
T Consensus 19 ~dd~dgdg~~Is~~EL~~l-l~~~~~~~~~~~~~~~~v~~i---~~elD~n~dG~Idf~EF~ 76 (93)
T cd05026 19 YSGKEGDRYKLSKGELKEL-LQRELTDFLSSQKDPMLVDKI---MNDLDSNKDNEVDFNEFV 76 (93)
T ss_pred HHccCCCCCEECHHHHHHH-HHHHhHHhcccccCHHHHHHH---HHHhCCCCCCCCCHHHHH
Confidence 45567887 4898776443 333 223455666554 555688999999999854
No 78
>PTZ00183 centrin; Provisional
Probab=81.67 E-value=4.1 Score=33.79 Aligned_cols=54 Identities=17% Similarity=0.254 Sum_probs=40.5
Q ss_pred hhhcccCCCccchHHHHHHHHHHcCCCCHHHHHHHHHHhhhcCCCCCCccChhhhhh
Q 047952 290 EAADIDEDGVVSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDLFL 346 (354)
Q Consensus 290 ~~~~l~~~g~v~~~e~v~~~l~~~~~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~~ 346 (354)
+..|.+++|.++..|+..........++.+++..+ |..+|.|++|.|+.+++.-
T Consensus 97 ~~~D~~~~G~i~~~e~~~~l~~~~~~l~~~~~~~~---~~~~d~~~~g~i~~~ef~~ 150 (158)
T PTZ00183 97 RLFDDDKTGKISLKNLKRVAKELGETITDEELQEM---IDEADRNGDGEISEEEFYR 150 (158)
T ss_pred HHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHH---HHHhCCCCCCcCcHHHHHH
Confidence 45577899999988877665544456788777765 4566889999999999753
No 79
>PRK12772 bifunctional flagellar biosynthesis protein FliR/FlhB; Provisional
Probab=81.47 E-value=27 Score=36.55 Aligned_cols=46 Identities=20% Similarity=0.247 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhhhcccCCC
Q 047952 248 WISSSTMTLAQFFLYVAEFNTEKRQKALVNWVLTRKMTHVDLEAADIDEDG 298 (354)
Q Consensus 248 ~i~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~l~~~~l~~~g 298 (354)
+.++......+.+-.+.++..++++ +.++-||++.|.+.+-.+.+|
T Consensus 447 ~~l~~~~~~~~~via~~D~~~q~~~-----~~k~lkMskqEvK~E~Ke~EG 492 (609)
T PRK12772 447 ISIFFRITLIMIIIAVADYVYQKYQ-----YNKDLRMTKQEVKEEYKQDEG 492 (609)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHhCCCCHHHHHHHHHhccC
Confidence 3333444445555556677775533 334668888887777655444
No 80
>PRK05482 potassium-transporting ATPase subunit A; Provisional
Probab=81.05 E-value=6.3 Score=40.47 Aligned_cols=52 Identities=15% Similarity=0.098 Sum_probs=41.1
Q ss_pred CCchhhhhhhhhhhccccc--CccccCCccchhHHHHHHHHh-HHHHHHhHHHHH
Q 047952 99 NEILDSIYFCIVTMTTVGY--GDLVPNSVVSKLLSCAFVFTG-MGLVGMFLSKAA 150 (354)
Q Consensus 99 ~~~~~a~yf~~~t~tTvGy--Gdi~P~t~~~r~~~~~~~l~G-i~~~~~~~~~~~ 150 (354)
..+.+.+|=......|+|. |.+.+.|+.+++..++.|++| +..+...++..+
T Consensus 450 hgfseiLyE~~SA~~tnGss~gGLt~~t~~~niil~~~M~iGR~Gpit~~lAlAg 504 (559)
T PRK05482 450 HGFSEVLYAYTSAAANNGSAFAGLGANTPFWNLTLGIAMLLGRFLPIIPVLAIAG 504 (559)
T ss_pred CCHHHHHHHHHhhccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999994 568899999999999999987 444444444333
No 81
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=80.12 E-value=5.2 Score=27.89 Aligned_cols=50 Identities=26% Similarity=0.406 Sum_probs=35.6
Q ss_pred hhcccCCCccchHHHHHHHHHHcCCCCHHHHHHHHHHhhhcCCCCCCccChhhhh
Q 047952 291 AADIDEDGVVSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDLF 345 (354)
Q Consensus 291 ~~~l~~~g~v~~~e~v~~~l~~~~~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~ 345 (354)
..|.+++|.++..|+... +.+.|. +.++++++ +...|.+++|.++.++..
T Consensus 7 ~~D~~~~G~i~~~el~~~-l~~~g~-~~~~~~~i---~~~~d~~~~g~i~~~ef~ 56 (67)
T cd00052 7 SLDPDGDGLISGDEARPF-LGKSGL-PRSVLAQI---WDLADTDKDGKLDKEEFA 56 (67)
T ss_pred HhCCCCCCcCcHHHHHHH-HHHcCC-CHHHHHHH---HHHhcCCCCCcCCHHHHH
Confidence 345678899998775544 455554 67766665 566788999999998864
No 82
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=79.97 E-value=4.1 Score=34.22 Aligned_cols=54 Identities=24% Similarity=0.457 Sum_probs=40.9
Q ss_pred hhhcccCCCccchHH--HHHHHHHHcCCCCHHHHHHHHHH-hhhcCCCCCCccChhhh
Q 047952 290 EAADIDEDGVVSAAE--FIIYKLKEMGKISQEDIALVMEE-FQDLDFDQSGTLSPSDL 344 (354)
Q Consensus 290 ~~~~l~~~g~v~~~e--~v~~~l~~~~~~~~~~l~~i~~~-f~~ld~~~~g~l~~~d~ 344 (354)
++-|.++++-++..+ ..+..| ..+.++.++++.++++ .++-|.|+||+|+..|.
T Consensus 115 kIYDfd~D~~i~~~DL~~~l~~l-Tr~eLs~eEv~~i~ekvieEAD~DgDgkl~~~eF 171 (189)
T KOG0038|consen 115 KIYDFDGDEFIGHDDLEKTLTSL-TRDELSDEEVELICEKVIEEADLDGDGKLSFAEF 171 (189)
T ss_pred EEeecCCCCcccHHHHHHHHHHH-hhccCCHHHHHHHHHHHHHHhcCCCCCcccHHHH
Confidence 567888999888654 233333 3456888999999877 78899999999998874
No 83
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=79.81 E-value=4.4 Score=35.69 Aligned_cols=57 Identities=23% Similarity=0.397 Sum_probs=40.9
Q ss_pred hhhcccCCCccchHHHHH--HHHHHcC-CCCHHHHHHHHHH-hhhcCCCCCCccChhhhhh
Q 047952 290 EAADIDEDGVVSAAEFII--YKLKEMG-KISQEDIALVMEE-FQDLDFDQSGTLSPSDLFL 346 (354)
Q Consensus 290 ~~~~l~~~g~v~~~e~v~--~~l~~~~-~~~~~~l~~i~~~-f~~ld~~~~g~l~~~d~~~ 346 (354)
+.-|++++|.+++.|... ..+...+ ..+.+.++++.+. |.+-|.|+||.|+.+|..-
T Consensus 111 ~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~ 171 (187)
T KOG0034|consen 111 RVYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDIVDKTFEEADTDGDGKISFEEFCK 171 (187)
T ss_pred HHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHhCCCCCCcCcHHHHHH
Confidence 466889999999876432 2332221 2247788888766 9999999999999999544
No 84
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=79.47 E-value=6 Score=30.21 Aligned_cols=46 Identities=22% Similarity=0.348 Sum_probs=33.0
Q ss_pred CCccchHHHHHHHHH--HcC-CCCHHHHHHHHHHhhhcCCCCCCccChhhhh
Q 047952 297 DGVVSAAEFIIYKLK--EMG-KISQEDIALVMEEFQDLDFDQSGTLSPSDLF 345 (354)
Q Consensus 297 ~g~v~~~e~v~~~l~--~~~-~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~ 345 (354)
+|.++..|+....-. .+| +.++++++++ ++++|.|++|.++.+|+.
T Consensus 26 ~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m---~~~~D~d~dG~Idf~EFv 74 (88)
T cd05029 26 KNTLSKKELKELIQKELTIGSKLQDAEIAKL---MEDLDRNKDQEVNFQEYV 74 (88)
T ss_pred CCEECHHHHHHHHHHHHhcCCCCCHHHHHHH---HHHhcCCCCCCCcHHHHH
Confidence 778887775554321 234 5788888776 556699999999999863
No 85
>PTZ00183 centrin; Provisional
Probab=78.72 E-value=4.2 Score=33.75 Aligned_cols=51 Identities=24% Similarity=0.379 Sum_probs=36.9
Q ss_pred hcccCCCccchHHHHHHHHHHc-CCCCHHHHHHHHHHhhhcCCCCCCccChhhhh
Q 047952 292 ADIDEDGVVSAAEFIIYKLKEM-GKISQEDIALVMEEFQDLDFDQSGTLSPSDLF 345 (354)
Q Consensus 292 ~~l~~~g~v~~~e~v~~~l~~~-~~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~ 345 (354)
.|.+++|.++..||+...-... ....+ +.+...|..+|.|++|.|+.+|+.
T Consensus 62 ~d~~~~g~i~~~eF~~~~~~~~~~~~~~---~~l~~~F~~~D~~~~G~i~~~e~~ 113 (158)
T PTZ00183 62 VDKDGSGKIDFEEFLDIMTKKLGERDPR---EEILKAFRLFDDDKTGKISLKNLK 113 (158)
T ss_pred hCCCCCCcEeHHHHHHHHHHHhcCCCcH---HHHHHHHHHhCCCCCCcCcHHHHH
Confidence 3457888999999987643322 23333 345677899999999999999875
No 86
>PRK00523 hypothetical protein; Provisional
Probab=77.94 E-value=25 Score=25.82 Aligned_cols=64 Identities=14% Similarity=0.110 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhhhcccCCCccchHHHHHHHHHHcC-CCCHHHHHHHH
Q 047952 247 VWISSSTMTLAQFFLYVAEFNTEKRQKALVNWVLTRKMTHVDLEAADIDEDGVVSAAEFIIYKLKEMG-KISQEDIALVM 325 (354)
Q Consensus 247 ~~i~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~l~~~~l~~~g~v~~~e~v~~~l~~~~-~~~~~~l~~i~ 325 (354)
.++.+++++++.+++.+..++..++ .+++.+... ..++ .+-+..+..+|| +-++..+.++.
T Consensus 4 ~~l~I~l~i~~li~G~~~Gffiark--~~~k~l~~N---------------Ppin-e~mir~M~~QMGqKPSekki~Q~m 65 (72)
T PRK00523 4 IGLALGLGIPLLIVGGIIGYFVSKK--MFKKQIREN---------------PPIT-ENMIRAMYMQMGRKPSESQIKQVM 65 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHC---------------cCCC-HHHHHHHHHHhCCCccHHHHHHHH
Confidence 3455667777788888887777542 333322211 1222 246777888888 68889999888
Q ss_pred HHh
Q 047952 326 EEF 328 (354)
Q Consensus 326 ~~f 328 (354)
+..
T Consensus 66 ~~m 68 (72)
T PRK00523 66 RSV 68 (72)
T ss_pred HHH
Confidence 776
No 87
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=77.79 E-value=4.2 Score=34.71 Aligned_cols=51 Identities=18% Similarity=0.271 Sum_probs=36.9
Q ss_pred ccCCCccchHHHHHHHHHHcCCCCHHHHHHHHHHhhhcCCCCCCccChhhhhh
Q 047952 294 IDEDGVVSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDLFL 346 (354)
Q Consensus 294 l~~~g~v~~~e~v~~~l~~~~~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~~ 346 (354)
-++.|.+.-.+|..-+-..++.-+ -.+++...|...|.|++|.|++.++..
T Consensus 80 k~~~g~i~fe~f~~~mt~k~~e~d--t~eEi~~afrl~D~D~~Gkis~~~lkr 130 (172)
T KOG0028|consen 80 KEGSGKITFEDFRRVMTVKLGERD--TKEEIKKAFRLFDDDKTGKISQRNLKR 130 (172)
T ss_pred hccCceechHHHHHHHHHHHhccC--cHHHHHHHHHcccccCCCCcCHHHHHH
Confidence 346677777777777666666555 445567788888999999988888653
No 88
>PTZ00184 calmodulin; Provisional
Probab=77.61 E-value=5.5 Score=32.49 Aligned_cols=48 Identities=27% Similarity=0.554 Sum_probs=23.1
Q ss_pred cccCCCccchHHHHHHHHHHcC-CCCHHHHHHHHHHhhhcCCCCCCccChhhh
Q 047952 293 DIDEDGVVSAAEFIIYKLKEMG-KISQEDIALVMEEFQDLDFDQSGTLSPSDL 344 (354)
Q Consensus 293 ~l~~~g~v~~~e~v~~~l~~~~-~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~ 344 (354)
|.+++|.++..|+... +...+ .++.++++.+ |..+|.+++|.++-++.
T Consensus 94 D~~~~g~i~~~e~~~~-l~~~~~~~~~~~~~~~---~~~~d~~~~g~i~~~ef 142 (149)
T PTZ00184 94 DRDGNGFISAAELRHV-MTNLGEKLTDEEVDEM---IREADVDGDGQINYEEF 142 (149)
T ss_pred CCCCCCeEeHHHHHHH-HHHHCCCCCHHHHHHH---HHhcCCCCCCcCcHHHH
Confidence 4445555665554333 22223 2444444443 34445566666665554
No 89
>KOG4440 consensus NMDA selective glutamate-gated ion channel receptor subunit GRIN1 [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=77.61 E-value=2 Score=44.10 Aligned_cols=57 Identities=18% Similarity=0.378 Sum_probs=52.3
Q ss_pred CCccccceeeeeeecccccCCcccCCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047952 213 MSFVDAFYCVCSTITTLGYGDKSFSTTGGRAFGVVWISSSTMTLAQFFLYVAEFNTE 269 (354)
Q Consensus 213 ~~~~da~yf~~vT~tTVGyGD~~p~t~~gr~~~~~~i~~g~~~~~~~~~~i~~~~~~ 269 (354)
.++..|+||+--.+..-|-|+-+|.+...|++.++|.-+.+++++..++.++..++-
T Consensus 612 lnlssAmWF~WGVLLNSGigEgtPRSfSARvLGmVWaGFaMIiVASYTANLAAFLVL 668 (993)
T KOG4440|consen 612 LNLSSAMWFSWGVLLNSGIGEGTPRSFSARVLGMVWAGFAMIIVASYTANLAAFLVL 668 (993)
T ss_pred cchhhhHHHHhHhhhccccCCCCCcchhHHHHHHHHhhhheeeehhhhhhhhhheee
Confidence 678889999999999999999999999999999999999999999999999887763
No 90
>PLN02964 phosphatidylserine decarboxylase
Probab=76.96 E-value=4.1 Score=42.65 Aligned_cols=52 Identities=27% Similarity=0.404 Sum_probs=38.7
Q ss_pred hhcccCCCccchHHHHHHHHHHcCC-CCHHHHHHHHHHhhhcCCCCCCccChhhhhh
Q 047952 291 AADIDEDGVVSAAEFIIYKLKEMGK-ISQEDIALVMEEFQDLDFDQSGTLSPSDLFL 346 (354)
Q Consensus 291 ~~~l~~~g~v~~~e~v~~~l~~~~~-~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~~ 346 (354)
..|.+++|.++..||+...- .++. .++++ +.+.|+..|.|++|.|+.+|+.-
T Consensus 187 ~~D~DgdG~IdfdEFl~lL~-~lg~~~seEE---L~eaFk~fDkDgdG~Is~dEL~~ 239 (644)
T PLN02964 187 IVDYDEDGQLSFSEFSDLIK-AFGNLVAANK---KEELFKAADLNGDGVVTIDELAA 239 (644)
T ss_pred HhCCCCCCeEcHHHHHHHHH-HhccCCCHHH---HHHHHHHhCCCCCCcCCHHHHHH
Confidence 34678899999988876554 3443 34444 56688899999999999999853
No 91
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=76.76 E-value=7.7 Score=29.68 Aligned_cols=51 Identities=22% Similarity=0.370 Sum_probs=33.6
Q ss_pred hcccCCC-ccchHHHHHHHHHH-----cCCCCHHHHHHHHHHhhhcCCCCCCccChhhhh
Q 047952 292 ADIDEDG-VVSAAEFIIYKLKE-----MGKISQEDIALVMEEFQDLDFDQSGTLSPSDLF 345 (354)
Q Consensus 292 ~~l~~~g-~v~~~e~v~~~l~~-----~~~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~ 345 (354)
.+.++++ .++..|+....-.+ ....++++++++ +.++|.|+||.++-++..
T Consensus 19 ~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~l---l~~~D~d~DG~I~f~EF~ 75 (89)
T cd05023 19 AGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRM---MKKLDLNSDGQLDFQEFL 75 (89)
T ss_pred hccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHH---HHHcCCCCCCcCcHHHHH
Confidence 3445554 78887765543333 135566777765 557799999999998863
No 92
>PTZ00184 calmodulin; Provisional
Probab=76.69 E-value=6.2 Score=32.17 Aligned_cols=53 Identities=25% Similarity=0.406 Sum_probs=38.5
Q ss_pred hhcccCCCccchHHHHHHHHHHcCCCCHHHHHHHHHHhhhcCCCCCCccChhhhh
Q 047952 291 AADIDEDGVVSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDLF 345 (354)
Q Consensus 291 ~~~l~~~g~v~~~e~v~~~l~~~~~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~ 345 (354)
..|.+++|.++..||+........... ..+.+...|...|.|++|.++.+|+.
T Consensus 55 ~~d~~~~g~i~~~ef~~~l~~~~~~~~--~~~~~~~~F~~~D~~~~g~i~~~e~~ 107 (149)
T PTZ00184 55 EVDADGNGTIDFPEFLTLMARKMKDTD--SEEEIKEAFKVFDRDGNGFISAAELR 107 (149)
T ss_pred hcCcCCCCcCcHHHHHHHHHHhccCCc--HHHHHHHHHHhhCCCCCCeEeHHHHH
Confidence 345678889999999877554333222 22456778999999999999999975
No 93
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=76.20 E-value=2.5 Score=34.17 Aligned_cols=27 Identities=30% Similarity=0.160 Sum_probs=13.5
Q ss_pred HHHHHHHHHhhhcCCCCCCccChhhhh
Q 047952 319 EDIALVMEEFQDLDFDQSGTLSPSDLF 345 (354)
Q Consensus 319 ~~l~~i~~~f~~ld~~~~g~l~~~d~~ 345 (354)
+....+.-.|..+|.|+||.|+.+||.
T Consensus 45 ~~~~~l~w~F~~lD~d~DG~Ls~~EL~ 71 (116)
T cd00252 45 MCKDPVGWMFNQLDGNYDGKLSHHELA 71 (116)
T ss_pred HHHHHHHHHHHHHCCCCCCcCCHHHHH
Confidence 334444445555555555555555544
No 94
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=76.09 E-value=4.2 Score=39.85 Aligned_cols=49 Identities=27% Similarity=0.517 Sum_probs=37.1
Q ss_pred hhhhcccCCCccchHHHHHHHHHHcCCCCHHHHHHHHHHhhhcCCCCCCccChhhhh
Q 047952 289 LEAADIDEDGVVSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDLF 345 (354)
Q Consensus 289 l~~~~l~~~g~v~~~e~v~~~l~~~~~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~ 345 (354)
+...|.+.+|+++-.||..+... .-.++.+-|..+|.|+||.++++++.
T Consensus 57 ~~~~d~~~dg~vDy~eF~~Y~~~--------~E~~l~~~F~~iD~~hdG~i~~~Ei~ 105 (463)
T KOG0036|consen 57 FSAMDANRDGRVDYSEFKRYLDN--------KELELYRIFQSIDLEHDGKIDPNEIW 105 (463)
T ss_pred HHhcccCcCCcccHHHHHHHHHH--------hHHHHHHHHhhhccccCCccCHHHHH
Confidence 45667788899998888888633 22355677999999999999988754
No 95
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=75.19 E-value=9.1 Score=29.17 Aligned_cols=48 Identities=23% Similarity=0.286 Sum_probs=33.5
Q ss_pred ccCCC-ccchHHHHHHHHHH-----cC-CCCHHHHHHHHHHhhhcCCCCCCccChhhhh
Q 047952 294 IDEDG-VVSAAEFIIYKLKE-----MG-KISQEDIALVMEEFQDLDFDQSGTLSPSDLF 345 (354)
Q Consensus 294 l~~~g-~v~~~e~v~~~l~~-----~~-~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~ 345 (354)
.+++| .++..|.... |.. .| ..++++++++.+ ++|.|++|.++-++..
T Consensus 20 ~dgdG~~I~~~eL~~l-l~~~~~~~lg~~~~~~~v~~~i~---~~D~n~dG~v~f~eF~ 74 (88)
T cd05027 20 REGDKHKLKKSELKEL-INNELSHFLEEIKEQEVVDKVME---TLDSDGDGECDFQEFM 74 (88)
T ss_pred cCCCcCEECHHHHHHH-HHHHhHHHhcCCCCHHHHHHHHH---HhCCCCCCcCcHHHHH
Confidence 56788 5887664443 444 34 456777877655 5699999999999864
No 96
>KOG1053 consensus Glutamate-gated NMDA-type ion channel receptor subunit GRIN2A and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=74.59 E-value=13 Score=40.06 Aligned_cols=54 Identities=15% Similarity=0.289 Sum_probs=39.3
Q ss_pred CCccccceeeeeeecccccCCcccC----CcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047952 213 MSFVDAFYCVCSTITTLGYGDKSFS----TTGGRAFGVVWISSSTMTLAQFFLYVAEFNTEK 270 (354)
Q Consensus 213 ~~~~da~yf~~vT~tTVGyGD~~p~----t~~gr~~~~~~i~~g~~~~~~~~~~i~~~~~~~ 270 (354)
.++..|+|....-+ |+.-+|. ...+|+.+.+|.++++++++..+++++..+++.
T Consensus 608 FtigkaiwllwaLv----FnnsVpv~nPKgtTskiMv~VWAfFavifLAsYTANLAAfMIqE 665 (1258)
T KOG1053|consen 608 FTIGKAIWLLWALV----FNNSVPVENPKGTTSKIMVLVWAFFAVIFLASYTANLAAFMIQE 665 (1258)
T ss_pred eehhhHHHHHHHHH----hCCCcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34555666332221 5565554 446899999999999999999999999988854
No 97
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=73.32 E-value=6.1 Score=30.32 Aligned_cols=47 Identities=19% Similarity=0.326 Sum_probs=32.2
Q ss_pred cCCCccchHHHHHHHHHHcC-CCCH-HHHHHHHHHhhhcCCCCCCccChhhh
Q 047952 295 DEDGVVSAAEFIIYKLKEMG-KISQ-EDIALVMEEFQDLDFDQSGTLSPSDL 344 (354)
Q Consensus 295 ~~~g~v~~~e~v~~~l~~~~-~~~~-~~l~~i~~~f~~ld~~~~g~l~~~d~ 344 (354)
+++|.++..|...-.-.+.| .++. +++++ -+..+|.|+||.++-++.
T Consensus 21 ~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~---mi~~~D~d~DG~I~F~EF 69 (89)
T cd05022 21 GGKESLTASEFQELLTQQLPHLLKDVEGLEE---KMKNLDVNQDSKLSFEEF 69 (89)
T ss_pred CCCCeECHHHHHHHHHHHhhhhccCHHHHHH---HHHHhCCCCCCCCcHHHH
Confidence 77888888775444322244 3554 55544 467889999999999985
No 98
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=73.06 E-value=7.9 Score=33.18 Aligned_cols=53 Identities=26% Similarity=0.465 Sum_probs=40.0
Q ss_pred hhhcccCCCccchHHHHHHHHHHcC-CCCHHHHHHHHHHhhhcCCCCCCccChhhhhh
Q 047952 290 EAADIDEDGVVSAAEFIIYKLKEMG-KISQEDIALVMEEFQDLDFDQSGTLSPSDLFL 346 (354)
Q Consensus 290 ~~~~l~~~g~v~~~e~v~~~l~~~~-~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~~ 346 (354)
+.-|.+++|.|+..| +.+.|+..| +.++++++.+. ...|.|++|.++-+++.-
T Consensus 99 ~~fD~d~dG~Is~~e-L~~vl~~lge~~~deev~~ll---~~~d~d~dG~i~~~eF~~ 152 (160)
T COG5126 99 KLFDKDHDGYISIGE-LRRVLKSLGERLSDEEVEKLL---KEYDEDGDGEIDYEEFKK 152 (160)
T ss_pred HHhCCCCCceecHHH-HHHHHHhhcccCCHHHHHHHH---HhcCCCCCceEeHHHHHH
Confidence 456789999999765 555566666 68888887764 555789999999998653
No 99
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=72.27 E-value=3.4 Score=31.10 Aligned_cols=29 Identities=21% Similarity=0.297 Sum_probs=25.6
Q ss_pred HHHHHHHHHHhhhcCC--CCCCccChhhhhh
Q 047952 318 QEDIALVMEEFQDLDF--DQSGTLSPSDLFL 346 (354)
Q Consensus 318 ~~~l~~i~~~f~~ld~--~~~g~l~~~d~~~ 346 (354)
+++++.+.+.|..+|. |++|.|+.+++.-
T Consensus 4 ~~~~~~l~~~F~~~D~~~~~~G~Is~~el~~ 34 (88)
T cd00213 4 EKAIETIIDVFHKYSGKEGDKDTLSKKELKE 34 (88)
T ss_pred HHHHHHHHHHHHHHhhccCCCCcCcHHHHHH
Confidence 5788889999999999 8999999999764
No 100
>PRK01844 hypothetical protein; Provisional
Probab=72.22 E-value=36 Score=24.98 Aligned_cols=64 Identities=17% Similarity=0.311 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhhhcccCCCccchHHHHHHHHHHcC-CCCHHHHHHHH
Q 047952 247 VWISSSTMTLAQFFLYVAEFNTEKRQKALVNWVLTRKMTHVDLEAADIDEDGVVSAAEFIIYKLKEMG-KISQEDIALVM 325 (354)
Q Consensus 247 ~~i~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~l~~~~l~~~g~v~~~e~v~~~l~~~~-~~~~~~l~~i~ 325 (354)
.|+.+++++++.+++.+..++..++ .+++.+... ..++ .+-+..+..+|| +-++..+.++.
T Consensus 3 ~~~~I~l~I~~li~G~~~Gff~ark--~~~k~lk~N---------------Ppin-e~mir~Mm~QMGqkPSekki~Q~m 64 (72)
T PRK01844 3 IWLGILVGVVALVAGVALGFFIARK--YMMNYLQKN---------------PPIN-EQMLKMMMMQMGQKPSQKKINQMM 64 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHC---------------CCCC-HHHHHHHHHHhCCCccHHHHHHHH
Confidence 3445556677888888888777542 333323222 1222 246777888888 68888998888
Q ss_pred HHh
Q 047952 326 EEF 328 (354)
Q Consensus 326 ~~f 328 (354)
+..
T Consensus 65 ~~m 67 (72)
T PRK01844 65 SAM 67 (72)
T ss_pred HHH
Confidence 776
No 101
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=71.98 E-value=13 Score=24.52 Aligned_cols=51 Identities=31% Similarity=0.494 Sum_probs=34.6
Q ss_pred hhcccCCCccchHHHHHHHHHHcC-CCCHHHHHHHHHHhhhcCCCCCCccChhhhh
Q 047952 291 AADIDEDGVVSAAEFIIYKLKEMG-KISQEDIALVMEEFQDLDFDQSGTLSPSDLF 345 (354)
Q Consensus 291 ~~~l~~~g~v~~~e~v~~~l~~~~-~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~ 345 (354)
..|.+++|.+...|+... +...+ ..+.+.+.. -|...|.+++|.++.+++.
T Consensus 8 ~~d~~~~g~l~~~e~~~~-l~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~ef~ 59 (63)
T cd00051 8 LFDKDGDGTISADELKAA-LKSLGEGLSEEEIDE---MIREVDKDGDGKIDFEEFL 59 (63)
T ss_pred HhCCCCCCcCcHHHHHHH-HHHhCCCCCHHHHHH---HHHHhCCCCCCeEeHHHHH
Confidence 345678888888775555 44443 455555555 4666788999999998864
No 102
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=71.96 E-value=6.2 Score=31.90 Aligned_cols=47 Identities=26% Similarity=0.356 Sum_probs=31.3
Q ss_pred hhhcccCCCccchHHHHHHHHHHcCCCCHHHHHHHHHHhhhcCCCCCCccChhh
Q 047952 290 EAADIDEDGVVSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSD 343 (354)
Q Consensus 290 ~~~~l~~~g~v~~~e~v~~~l~~~~~~~~~~l~~i~~~f~~ld~~~~g~l~~~d 343 (354)
...|.+++|.++..|.....+ + ..++.+ .+-|...|.|+||.||.++
T Consensus 55 ~~lD~d~DG~Ls~~EL~~~~l---~-~~e~~~---~~f~~~~D~n~Dg~IS~~E 101 (116)
T cd00252 55 NQLDGNYDGKLSHHELAPIRL---D-PNEHCI---KPFFESCDLDKDGSISLDE 101 (116)
T ss_pred HHHCCCCCCcCCHHHHHHHHc---c-chHHHH---HHHHHHHCCCCCCCCCHHH
Confidence 345677999999877553321 1 112333 3457777999999999998
No 103
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=70.86 E-value=3.2 Score=39.28 Aligned_cols=56 Identities=27% Similarity=0.289 Sum_probs=37.4
Q ss_pred hhhcccCCCccchHHHHHHHHHHcCCC-CHHHHHHHH-HHhhhcCCCCCCccChhhhh
Q 047952 290 EAADIDEDGVVSAAEFIIYKLKEMGKI-SQEDIALVM-EEFQDLDFDQSGTLSPSDLF 345 (354)
Q Consensus 290 ~~~~l~~~g~v~~~e~v~~~l~~~~~~-~~~~l~~i~-~~f~~ld~~~~g~l~~~d~~ 345 (354)
+..|.+++|.|+..||+-.+.-..+.- .++-+..-. +-+...|.|+||+|+.+++.
T Consensus 207 ~d~Dkn~DG~I~~eEfigd~~~~~~~~~epeWv~~Ere~F~~~~DknkDG~L~~dEl~ 264 (325)
T KOG4223|consen 207 EDIDKNGDGKISLEEFIGDLYSHEGNEEEPEWVLTEREQFFEFRDKNKDGKLDGDELL 264 (325)
T ss_pred hhcccCCCCceeHHHHHhHHhhccCCCCCcccccccHHHHHHHhhcCCCCccCHHHHh
Confidence 445677999999999998877655421 122222222 34667788999999988876
No 104
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=70.27 E-value=28 Score=29.64 Aligned_cols=24 Identities=21% Similarity=0.396 Sum_probs=20.2
Q ss_pred HHHHHhhhcCCCCCCccChhhhhh
Q 047952 323 LVMEEFQDLDFDQSGTLSPSDLFL 346 (354)
Q Consensus 323 ~i~~~f~~ld~~~~g~l~~~d~~~ 346 (354)
.|.+.|...|.+++|+|..+.+..
T Consensus 102 ~I~~AF~~FD~~~~G~I~~d~lre 125 (171)
T KOG0031|consen 102 VILNAFKTFDDEGSGKIDEDYLRE 125 (171)
T ss_pred HHHHHHHhcCccCCCccCHHHHHH
Confidence 467889999999999999887643
No 105
>KOG1054 consensus Glutamate-gated AMPA-type ion channel receptor subunit GluR2 and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=70.20 E-value=4.8 Score=41.20 Aligned_cols=55 Identities=18% Similarity=0.437 Sum_probs=49.5
Q ss_pred CCchhhhhhhhhhhcccccCccccCCccchhHHHHHHHHhHHHHHHhHHHHHHHHH
Q 047952 99 NEILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGMFLSKAADYLV 154 (354)
Q Consensus 99 ~~~~~a~yf~~~t~tTvGyGdi~P~t~~~r~~~~~~~l~Gi~~~~~~~~~~~~~~~ 154 (354)
.+.++++||+.-.+.-=| -||.|.+.-||++...|-++-+++++...++++.++.
T Consensus 594 FgifNsLWFsLgAFMQQG-~DI~PRslSGRIvggvWWFFTlIIiSSYTANLAAFLT 648 (897)
T KOG1054|consen 594 FGIFNSLWFSLGAFMQQG-CDISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLT 648 (897)
T ss_pred chhhHHHHHHHHHHHhcC-CCCCccccccceeccchhhhhhhhhhhhhhHHHHHHh
Confidence 578999999999888777 4999999999999999999999999999999988774
No 106
>PF07077 DUF1345: Protein of unknown function (DUF1345); InterPro: IPR009781 This family consists of several hypothetical bacterial proteins of around 230 residues in length. The function of this family is unknown.
Probab=69.47 E-value=8.9 Score=33.53 Aligned_cols=52 Identities=15% Similarity=0.080 Sum_probs=45.0
Q ss_pred CCcCCchhhhhhhhhhhcccccCccccCCccchhHHHHHHHHhHHHHHHhHH
Q 047952 96 LKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGMFLS 147 (354)
Q Consensus 96 ~~~~~~~~a~yf~~~t~tTvGyGdi~P~t~~~r~~~~~~~l~Gi~~~~~~~~ 147 (354)
.+..+|.|=+||+++.=+|-.-.|..+.+..-|-....-.++...+.+.+++
T Consensus 128 ~~~P~y~DFlYfsftiG~t~q~SDv~v~s~~~Rr~vl~hsllSF~Fnt~ilA 179 (180)
T PF07077_consen 128 DWEPDYWDFLYFSFTIGMTFQTSDVNVTSRRMRRLVLLHSLLSFFFNTVILA 179 (180)
T ss_pred CCCCCchhhhHHHHHHHhhccccCCCcCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3446899999999999999899999999999999999998888877776654
No 107
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=67.93 E-value=1.6e+02 Score=31.55 Aligned_cols=46 Identities=11% Similarity=0.026 Sum_probs=23.8
Q ss_pred cccccCCcccCC-----cCchHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 047952 227 TTLGYGDKSFST-----TGGRAFGVVWIS-SSTMTLAQFFLYVAEFNTEKRQ 272 (354)
Q Consensus 227 tTVGyGD~~p~t-----~~gr~~~~~~i~-~g~~~~~~~~~~i~~~~~~~~~ 272 (354)
+++|.+|..... ..|.++.++|++ .-++++-++++.+.+.+.+-..
T Consensus 569 ~~~G~~~~~~~~~~~~~~~~~il~~~y~~i~~ilLlNlLIAmm~~t~~~v~~ 620 (743)
T TIGR00870 569 AIIGLGDLLANEHKFTEFVGLLLFGAYNVIMYILLLNMLIAMMGNTYQLIAD 620 (743)
T ss_pred HHcCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHh
Confidence 357777763222 234544444433 4445556666666666655333
No 108
>PRK12773 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=67.71 E-value=97 Score=32.38 Aligned_cols=50 Identities=10% Similarity=0.179 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhhhcccCCC
Q 047952 244 FGVVWISSSTMTLAQFFLYVAEFNTEKRQKALVNWVLTRKMTHVDLEAADIDEDG 298 (354)
Q Consensus 244 ~~~~~i~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~l~~~~l~~~g 298 (354)
...+..++..+++++++-.+.++..++++ +..+-+|++.|++.+-.+.+|
T Consensus 478 ~~ll~~Lvl~vllvllVIAiiD~~~QR~~-----f~KkLKMSKQEVKdE~KEsEG 527 (646)
T PRK12773 478 MNSSFKIFLIVGIILLAISIVDYLYQRYE-----YEESLKMTPSEAKREAKESDG 527 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHCCCCHHHHHHHHHhccC
Confidence 34444444455555555666777775533 334668888887766555444
No 109
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=66.31 E-value=13 Score=36.56 Aligned_cols=42 Identities=24% Similarity=0.536 Sum_probs=32.2
Q ss_pred hhhhcccCCCccchHHHHHHHHHHcCCCCHHHHHHHHHHhhhcCCCCCCccChhhhhh
Q 047952 289 LEAADIDEDGVVSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDLFL 346 (354)
Q Consensus 289 l~~~~l~~~g~v~~~e~v~~~l~~~~~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~~ 346 (354)
....|.+++|.++..|+.. ...-|+.+|.|+||.++.+|+.-
T Consensus 340 F~~~D~dgdG~Is~~E~~~----------------~~~~F~~~D~d~DG~Is~eEf~~ 381 (391)
T PRK12309 340 FRLYDLDGDGFITREEWLG----------------SDAVFDALDLNHDGKITPEEMRA 381 (391)
T ss_pred HHHhCCCCCCcCcHHHHHH----------------HHHHHHHhCCCCCCCCcHHHHHH
Confidence 3455777888888888731 34559999999999999999754
No 110
>KOG1054 consensus Glutamate-gated AMPA-type ion channel receptor subunit GluR2 and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=65.23 E-value=2.8 Score=42.86 Aligned_cols=57 Identities=19% Similarity=0.335 Sum_probs=51.0
Q ss_pred CCccccceeeeeeecccccCCcccCCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047952 213 MSFVDAFYCVCSTITTLGYGDKSFSTTGGRAFGVVWISSSTMTLAQFFLYVAEFNTEK 270 (354)
Q Consensus 213 ~~~~da~yf~~vT~tTVGyGD~~p~t~~gr~~~~~~i~~g~~~~~~~~~~i~~~~~~~ 270 (354)
.+.++++||+...+.--|. |+.|.+..||+...+|-++.+++++..++.++..++-.
T Consensus 594 FgifNsLWFsLgAFMQQG~-DI~PRslSGRIvggvWWFFTlIIiSSYTANLAAFLTvE 650 (897)
T KOG1054|consen 594 FGIFNSLWFSLGAFMQQGC-DISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTVE 650 (897)
T ss_pred chhhHHHHHHHHHHHhcCC-CCCccccccceeccchhhhhhhhhhhhhhHHHHHHhHH
Confidence 4577899999998888885 99999999999999999999999999999999988853
No 111
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=63.43 E-value=7.2 Score=29.73 Aligned_cols=29 Identities=14% Similarity=0.266 Sum_probs=24.2
Q ss_pred HHHHHHHHHHhhhcC-CCCCC-ccChhhhhh
Q 047952 318 QEDIALVMEEFQDLD-FDQSG-TLSPSDLFL 346 (354)
Q Consensus 318 ~~~l~~i~~~f~~ld-~~~~g-~l~~~d~~~ 346 (354)
+..|..+.+.|...| .|++| .|+.+|+..
T Consensus 4 e~~~~~l~~aF~~fD~~dgdG~~I~~~eL~~ 34 (88)
T cd05027 4 EKAMVALIDVFHQYSGREGDKHKLKKSELKE 34 (88)
T ss_pred HHHHHHHHHHHHHhcccCCCcCEECHHHHHH
Confidence 456788899999998 79999 599999764
No 112
>COG4792 EscU Type III secretory pathway, component EscU [Intracellular trafficking and secretion]
Probab=63.32 E-value=61 Score=30.69 Aligned_cols=67 Identities=13% Similarity=0.153 Sum_probs=34.0
Q ss_pred eeeeecccccCCcccCCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhhh--cccCCC
Q 047952 222 VCSTITTLGYGDKSFSTTGGRAFGVVWISSSTMTLAQFFLYVAEFNTEKRQKALVNWVLTRKMTHVDLEAA--DIDEDG 298 (354)
Q Consensus 222 ~~vT~tTVGyGD~~p~t~~gr~~~~~~i~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~l~~~--~l~~~g 298 (354)
++.-+++-|.+-..|.-. +...|+..| ..+++....+.++..++++- .+.-||++++.+.+ |++|+.
T Consensus 164 t~~~lp~CG~~C~~~Vv~----~~~~~L~~g-~~~~ylv~sv~Dy~fqr~~~-----~K~lkMSKdEVkRE~Kd~eG~P 232 (349)
T COG4792 164 TFLYLPGCGLYCALPVVS----FLLRLLWVG-VAVGYLVFSVADYAFQRYQI-----LKELKMSKDEVKREYKDMEGDP 232 (349)
T ss_pred HHhhccccccchHHHHHH----HHHHHHHHH-HHHHHHHHHHHHHHHHHHHH-----HHHhccCHHHHHHHHhcccCCc
Confidence 344455556555554321 222333333 24566667777887776542 22346766665544 444544
No 113
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=63.25 E-value=7.3 Score=29.86 Aligned_cols=29 Identities=14% Similarity=0.290 Sum_probs=25.0
Q ss_pred HHHHHHHHHHhhhcCC-CCCCccChhhhhh
Q 047952 318 QEDIALVMEEFQDLDF-DQSGTLSPSDLFL 346 (354)
Q Consensus 318 ~~~l~~i~~~f~~ld~-~~~g~l~~~d~~~ 346 (354)
++.+..+.+.|...|. +++|.|+.+|+.-
T Consensus 4 E~ai~~l~~~F~~fd~~~~~g~i~~~ELk~ 33 (89)
T cd05022 4 EKAIETLVSNFHKASVKGGKESLTASEFQE 33 (89)
T ss_pred HHHHHHHHHHHHHHhCCCCCCeECHHHHHH
Confidence 4567888899999999 9999999999764
No 114
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=63.07 E-value=7.1 Score=29.76 Aligned_cols=30 Identities=13% Similarity=0.159 Sum_probs=23.9
Q ss_pred HHHHHHHHHHhhhcC-CCCCC-ccChhhhhhc
Q 047952 318 QEDIALVMEEFQDLD-FDQSG-TLSPSDLFLA 347 (354)
Q Consensus 318 ~~~l~~i~~~f~~ld-~~~~g-~l~~~d~~~~ 347 (354)
+..++.+.+.|...| .|++| .|+.+|+...
T Consensus 5 e~~~~~l~~~F~~fDd~dg~G~~Is~~El~~~ 36 (92)
T cd05025 5 ETAMETLINVFHAHSGKEGDKYKLSKKELKDL 36 (92)
T ss_pred HHHHHHHHHHHHHHhcccCCCCeECHHHHHHH
Confidence 345677888999997 99999 5999997653
No 115
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=61.18 E-value=11 Score=35.66 Aligned_cols=54 Identities=26% Similarity=0.411 Sum_probs=40.0
Q ss_pred hhhcccCCCccchHHHHHHHHHHcCCCCHHHHHH--HHHHhhhcCCCCCCccChhhhhhc
Q 047952 290 EAADIDEDGVVSAAEFIIYKLKEMGKISQEDIAL--VMEEFQDLDFDQSGTLSPSDLFLA 347 (354)
Q Consensus 290 ~~~~l~~~g~v~~~e~v~~~l~~~~~~~~~~l~~--i~~~f~~ld~~~~g~l~~~d~~~~ 347 (354)
..+|.+++|.+...||....=.+. ..++.. +.+....+|.|+||.++.++....
T Consensus 170 k~AD~d~dg~lt~EEF~aFLHPEe----~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd 225 (325)
T KOG4223|consen 170 KAADQDGDGSLTLEEFTAFLHPEE----HPHMKDIVIAETLEDIDKNGDGKISLEEFIGD 225 (325)
T ss_pred hhcccCCCCcccHHHHHhccChhh----cchHHHHHHHHHHhhcccCCCCceeHHHHHhH
Confidence 678899999999999887643222 222222 357799999999999999987653
No 116
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=60.65 E-value=4.9 Score=28.06 Aligned_cols=22 Identities=27% Similarity=0.294 Sum_probs=18.6
Q ss_pred HHHhhhcCCCCCCccChhhhhh
Q 047952 325 MEEFQDLDFDQSGTLSPSDLFL 346 (354)
Q Consensus 325 ~~~f~~ld~~~~g~l~~~d~~~ 346 (354)
.+.|..+|.|++|.++.+|+.-
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~ 23 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARP 23 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHH
Confidence 3568999999999999999753
No 117
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=60.60 E-value=23 Score=27.02 Aligned_cols=47 Identities=17% Similarity=0.345 Sum_probs=32.5
Q ss_pred cC-CCccchHHHHHHHHHH-c----C-CCCHHHHHHHHHHhhhcCCCCCCccChhhhh
Q 047952 295 DE-DGVVSAAEFIIYKLKE-M----G-KISQEDIALVMEEFQDLDFDQSGTLSPSDLF 345 (354)
Q Consensus 295 ~~-~g~v~~~e~v~~~l~~-~----~-~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~ 345 (354)
++ +|.++..|.... +.. . | ..++++++.+.+ ++|.|++|.++.++..
T Consensus 21 dg~dG~Is~~El~~~-l~~~~g~~lg~~~s~~ei~~~~~---~~D~~~dg~I~f~eF~ 74 (94)
T cd05031 21 DGDKNTLSRKELKKL-MEKELSEFLKNQKDPMAVDKIMK---DLDQNRDGKVNFEEFV 74 (94)
T ss_pred CCCCCeECHHHHHHH-HHHHhHHHhhccccHHHHHHHHH---HhCCCCCCcCcHHHHH
Confidence 65 589998776554 232 1 2 456777776655 5688999999999864
No 118
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=59.93 E-value=6.1 Score=21.54 Aligned_cols=22 Identities=23% Similarity=0.276 Sum_probs=17.5
Q ss_pred HHHhhhcCCCCCCccChhhhhh
Q 047952 325 MEEFQDLDFDQSGTLSPSDLFL 346 (354)
Q Consensus 325 ~~~f~~ld~~~~g~l~~~d~~~ 346 (354)
.+-|...|.|++|.++.+++..
T Consensus 3 ~~~f~~~d~~~~g~i~~~e~~~ 24 (29)
T smart00054 3 KEAFRLFDKDGDGKIDFEEFKD 24 (29)
T ss_pred HHHHHHHCCCCCCcEeHHHHHH
Confidence 4567888999999999988653
No 119
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=58.99 E-value=2.6e+02 Score=31.71 Aligned_cols=32 Identities=19% Similarity=0.091 Sum_probs=16.8
Q ss_pred CCccccceeeeeeecccccCCcccCCcCchHHH
Q 047952 213 MSFVDAFYCVCSTITTLGYGDKSFSTTGGRAFG 245 (354)
Q Consensus 213 ~~~~da~yf~~vT~tTVGyGD~~p~t~~gr~~~ 245 (354)
.+|.|.+-..-+|.|+-|=.-..|.|. +.++.
T Consensus 807 ~s~Ld~i~LW~~t~~~~g~~~~~~itl-~~ll~ 838 (1109)
T PRK10929 807 FGFLENISLWDVTSTVQGVESLQPITL-GSVLI 838 (1109)
T ss_pred HHHhcceeEEeeeceeccccceeeeeH-HHHHH
Confidence 567776665445545545333456664 44333
No 120
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=58.41 E-value=21 Score=27.10 Aligned_cols=50 Identities=16% Similarity=0.258 Sum_probs=32.9
Q ss_pred cccCCC-ccchHHHHHHHHHHcC-----CCCHHHHHHHHHHhhhcCCCCCCccChhhhh
Q 047952 293 DIDEDG-VVSAAEFIIYKLKEMG-----KISQEDIALVMEEFQDLDFDQSGTLSPSDLF 345 (354)
Q Consensus 293 ~l~~~g-~v~~~e~v~~~l~~~~-----~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~ 345 (354)
|.+++| .++..|.....-...| ..++++++++.+ .+|.|++|.++-++..
T Consensus 20 d~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~---~~D~d~~G~I~f~eF~ 75 (92)
T cd05025 20 GKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMK---ELDENGDGEVDFQEFV 75 (92)
T ss_pred cccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHH---HHCCCCCCcCcHHHHH
Confidence 367888 4887665444311233 246777776655 5688999999998864
No 121
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=57.73 E-value=9.5 Score=29.19 Aligned_cols=28 Identities=21% Similarity=0.213 Sum_probs=22.8
Q ss_pred HHHHHHHHHhhhcCC-CC-CCccChhhhhh
Q 047952 319 EDIALVMEEFQDLDF-DQ-SGTLSPSDLFL 346 (354)
Q Consensus 319 ~~l~~i~~~f~~ld~-~~-~g~l~~~d~~~ 346 (354)
..+..+.+.|...|. |+ +|.|+.+|+.-
T Consensus 5 ~~~~~l~~~F~~~D~~dg~dG~Is~~El~~ 34 (94)
T cd05031 5 HAMESLILTFHRYAGKDGDKNTLSRKELKK 34 (94)
T ss_pred HHHHHHHHHHHHHhccCCCCCeECHHHHHH
Confidence 446678888999997 87 69999999874
No 122
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=56.92 E-value=20 Score=32.20 Aligned_cols=47 Identities=32% Similarity=0.365 Sum_probs=30.7
Q ss_pred cccCCCccchHHHHHHHHHHcCCCCHHHHHHHHHHhhhcCCCCCCccChhhhhhcc
Q 047952 293 DIDEDGVVSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDLFLAQ 348 (354)
Q Consensus 293 ~l~~~g~v~~~e~v~~~l~~~~~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~~~~ 348 (354)
|-++.|.++..||..-. .-|.+-.+-|+.-|.|+||+|+..+|.-|-
T Consensus 104 d~~~~G~i~f~EF~~Lw---------~~i~~Wr~vF~~~D~D~SG~I~~sEL~~Al 150 (221)
T KOG0037|consen 104 DRDNSGTIGFKEFKALW---------KYINQWRNVFRTYDRDRSGTIDSSELRQAL 150 (221)
T ss_pred cCCCCCccCHHHHHHHH---------HHHHHHHHHHHhcccCCCCcccHHHHHHHH
Confidence 33455555555554433 334555666888899999999998887653
No 123
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=56.60 E-value=15 Score=31.49 Aligned_cols=49 Identities=20% Similarity=0.222 Sum_probs=32.9
Q ss_pred CCCccchHHHHHHHHHHcCCCCHHHHHHHHHHhhhcCCCCCCccChhhhhh
Q 047952 296 EDGVVSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDLFL 346 (354)
Q Consensus 296 ~~g~v~~~e~v~~~l~~~~~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~~ 346 (354)
+.+.++-.+|+..+=.....-+ .-+++...|+..|.|++|+|+..++..
T Consensus 68 ~~~~idf~~Fl~~ms~~~~~~~--~~Eel~~aF~~fD~d~dG~Is~~eL~~ 116 (160)
T COG5126 68 GNETVDFPEFLTVMSVKLKRGD--KEEELREAFKLFDKDHDGYISIGELRR 116 (160)
T ss_pred CCCccCHHHHHHHHHHHhccCC--cHHHHHHHHHHhCCCCCceecHHHHHH
Confidence 3455666666665544443222 234557789999999999999998754
No 124
>PF01595 DUF21: Domain of unknown function DUF21; InterPro: IPR002550 This transmembrane region has no known function. Many of the sequences in this family are annotated as hemolysins, however this is due to a similarity to Q54318 from SWISSPROT that does not contain this domain. This domain is found in the N terminus of the proteins adjacent to two intracellular CBS domains (IPR000644 from INTERPRO).
Probab=56.13 E-value=75 Score=27.01 Aligned_cols=25 Identities=12% Similarity=0.057 Sum_probs=16.7
Q ss_pred ccccceeeeeeecccccCCcccCCc
Q 047952 215 FVDAFYCVCSTITTLGYGDKSFSTT 239 (354)
Q Consensus 215 ~~da~yf~~vT~tTVGyGD~~p~t~ 239 (354)
....+.+.+.++-.+=+|++.|...
T Consensus 86 ~~~~~~~~~~~~l~lif~e~lPk~l 110 (183)
T PF01595_consen 86 WALLIAFLIITLLILIFGEILPKAL 110 (183)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445566677778889888763
No 125
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=53.53 E-value=20 Score=31.67 Aligned_cols=52 Identities=21% Similarity=0.321 Sum_probs=38.1
Q ss_pred hhcccCCCccchHHHHHHHHHHcCCCCHHHHHHHHHHhhhcCCCCCCccChhhhh
Q 047952 291 AADIDEDGVVSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDLF 345 (354)
Q Consensus 291 ~~~l~~~g~v~~~e~v~~~l~~~~~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~ 345 (354)
.-|.+++|.++-.||+++.=.-..-..+|-+. =.|.-.|.|++|.|+.++..
T Consensus 72 ~fD~~~dg~i~F~Efi~als~~~rGt~eekl~---w~F~lyD~dgdG~It~~Eml 123 (193)
T KOG0044|consen 72 TFDKNKDGTIDFLEFICALSLTSRGTLEEKLK---WAFRLYDLDGDGYITKEEML 123 (193)
T ss_pred HhcccCCCCcCHHHHHHHHHHHcCCcHHHHhh---hhheeecCCCCceEcHHHHH
Confidence 44568899999889888765544444444443 34999999999999998853
No 126
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=52.70 E-value=43 Score=25.54 Aligned_cols=50 Identities=26% Similarity=0.369 Sum_probs=35.6
Q ss_pred hhcccCCCccchHHHHHHHHHHcCCCCHHHHHHHHHHhhhcCCCCCCccChhhhh
Q 047952 291 AADIDEDGVVSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDLF 345 (354)
Q Consensus 291 ~~~l~~~g~v~~~e~v~~~l~~~~~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~ 345 (354)
.-|.+++|.++..|.... +.+.+ +++++++++. ...|.+++|.|+.++..
T Consensus 18 ~~D~d~~G~Is~~el~~~-l~~~~-~~~~ev~~i~---~~~d~~~~g~I~~~eF~ 67 (96)
T smart00027 18 SLDKNQDGTVTGAQAKPI-LLKSG-LPQTLLAKIW---NLADIDNDGELDKDEFA 67 (96)
T ss_pred HhCCCCCCeEeHHHHHHH-HHHcC-CCHHHHHHHH---HHhcCCCCCCcCHHHHH
Confidence 345678899987664444 45544 6777776654 55688999999999865
No 127
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=51.80 E-value=37 Score=25.28 Aligned_cols=52 Identities=15% Similarity=0.257 Sum_probs=33.7
Q ss_pred hhcc--cCCCccchHHHHHHHHHHcCC-----CCHHHHHHHHHHhhhcCCCCCCccChhhhh
Q 047952 291 AADI--DEDGVVSAAEFIIYKLKEMGK-----ISQEDIALVMEEFQDLDFDQSGTLSPSDLF 345 (354)
Q Consensus 291 ~~~l--~~~g~v~~~e~v~~~l~~~~~-----~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~ 345 (354)
.-|. +++|.++..|+....-...|. .+.++++++ +...|.+++|.++.++..
T Consensus 16 ~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i---~~~~d~~~~g~I~f~eF~ 74 (88)
T cd00213 16 KYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKI---MKDLDVNKDGKVDFQEFL 74 (88)
T ss_pred HHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHH---HHHhccCCCCcCcHHHHH
Confidence 3355 688889887765443111232 346777665 445588999999999864
No 128
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=50.80 E-value=14 Score=28.29 Aligned_cols=29 Identities=14% Similarity=0.220 Sum_probs=22.8
Q ss_pred HHHHHHHHHHhhhcC-CCCCC-ccChhhhhh
Q 047952 318 QEDIALVMEEFQDLD-FDQSG-TLSPSDLFL 346 (354)
Q Consensus 318 ~~~l~~i~~~f~~ld-~~~~g-~l~~~d~~~ 346 (354)
++.+..+.+.|...| .|++| +|+.+|+.-
T Consensus 6 e~a~~~~~~~F~~~dd~dgdg~~Is~~EL~~ 36 (93)
T cd05026 6 EGAMDTLIRIFHNYSGKEGDRYKLSKGELKE 36 (93)
T ss_pred HHHHHHHHHHHHHHHccCCCCCEECHHHHHH
Confidence 456777888899998 68898 599998764
No 129
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=50.69 E-value=35 Score=28.46 Aligned_cols=52 Identities=23% Similarity=0.320 Sum_probs=37.4
Q ss_pred hhhcccCCCccchHHHHHHHHHHcCCCCHHHHHHHHHHhhhcCCCCCCccChhhh
Q 047952 290 EAADIDEDGVVSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDL 344 (354)
Q Consensus 290 ~~~~l~~~g~v~~~e~v~~~l~~~~~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~ 344 (354)
..-|.+++|.++..|.......--.+.+.++++. -+.+.|.|+||.++-++.
T Consensus 92 ~~fD~d~~G~Is~~el~~~l~~lg~~~~~~e~~~---mi~~~d~d~dg~i~f~ef 143 (151)
T KOG0027|consen 92 RVFDKDGDGFISASELKKVLTSLGEKLTDEECKE---MIREVDVDGDGKVNFEEF 143 (151)
T ss_pred HHHccCCCCcCcHHHHHHHHHHhCCcCCHHHHHH---HHHhcCCCCCCeEeHHHH
Confidence 3456789999998886666555555777666655 455667799999977654
No 130
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=50.10 E-value=35 Score=25.78 Aligned_cols=47 Identities=30% Similarity=0.388 Sum_probs=28.8
Q ss_pred CCCccchHHHHHHHHHHcC-CCC----HHHHHHHHHHhhhcCCCCCCccChhhhh
Q 047952 296 EDGVVSAAEFIIYKLKEMG-KIS----QEDIALVMEEFQDLDFDQSGTLSPSDLF 345 (354)
Q Consensus 296 ~~g~v~~~e~v~~~l~~~~-~~~----~~~l~~i~~~f~~ld~~~~g~l~~~d~~ 345 (354)
+.|.++..|+..-.-...+ .++ +++++.+.+ +.|.|++|.++.++..
T Consensus 23 ~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~---~~D~d~dG~I~f~eF~ 74 (88)
T cd05030 23 HPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFE---DLDTNQDGQLSFEEFL 74 (88)
T ss_pred CcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHH---HcCCCCCCcCcHHHHH
Confidence 3556776654433222322 233 677766554 5588999999999864
No 131
>COG4325 Predicted membrane protein [Function unknown]
Probab=49.76 E-value=1.6e+02 Score=28.95 Aligned_cols=33 Identities=15% Similarity=0.070 Sum_probs=20.6
Q ss_pred ccCCcccCCcCchHHHHHHHHHHHHHHHHHHHHHH
Q 047952 230 GYGDKSFSTTGGRAFGVVWISSSTMTLAQFFLYVA 264 (354)
Q Consensus 230 GyGD~~p~t~~gr~~~~~~i~~g~~~~~~~~~~i~ 264 (354)
|+|-++|.- .-...+++.++.++.+.+++..+.
T Consensus 153 ~~g~FIp~~--avtv~lLlaiisig~~iyfl~~l~ 185 (464)
T COG4325 153 GQGAFIPKV--AVTVSLLLAIISIGALIYFLHHLM 185 (464)
T ss_pred ccccceehH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556677742 334555666667777777777665
No 132
>COG3817 Predicted membrane protein [Function unknown]
Probab=47.80 E-value=61 Score=29.92 Aligned_cols=28 Identities=25% Similarity=0.541 Sum_probs=21.5
Q ss_pred CcCCchhhhhhhhhhhcccccCccccCCc
Q 047952 97 KTNEILDSIYFCIVTMTTVGYGDLVPNSV 125 (354)
Q Consensus 97 ~~~~~~~a~yf~~~t~tTvGyGdi~P~t~ 125 (354)
++..|.++.+|..-.+|-+| ||..|.-.
T Consensus 29 np~r~~t~~FW~l~~~tFl~-g~~lp~~v 56 (313)
T COG3817 29 NPVRFGTGLFWGLFSLTFLG-GDRLPNIV 56 (313)
T ss_pred CCceecchHHHHHHHHHHhc-cccccchh
Confidence 34678899999999888887 67777543
No 133
>KOG2302 consensus T-type voltage-gated Ca2+ channel, pore-forming alpha1I subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=47.73 E-value=3.9e+02 Score=30.00 Aligned_cols=34 Identities=24% Similarity=0.088 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047952 243 AFGVVWISSSTMTLAQFFLYVAEFNTEKRQKALV 276 (354)
Q Consensus 243 ~~~~~~i~~g~~~~~~~~~~i~~~~~~~~~~~~~ 276 (354)
.|.+++.++...++.++++.+.+.+-..++++.+
T Consensus 1364 YfIsfllIvsffVlnmfVgvvvenfhKcrqhqe~ 1397 (1956)
T KOG2302|consen 1364 YFISFLLIVSFFVLNMFVGVVVENFHKCRQHQEA 1397 (1956)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666677777778888888777765554433
No 134
>PRK08156 type III secretion system protein SpaS; Validated
Probab=47.68 E-value=1.2e+02 Score=29.61 Aligned_cols=47 Identities=13% Similarity=0.159 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhhhcccCCC
Q 047952 247 VWISSSTMTLAQFFLYVAEFNTEKRQKALVNWVLTRKMTHVDLEAADIDEDG 298 (354)
Q Consensus 247 ~~i~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~l~~~~l~~~g 298 (354)
++.++..+++.+++-.+.++..++++ +..+-+|++.|++.+-.+.+|
T Consensus 178 ~~~l~~~~~~~~lvia~~D~~~Qr~~-----~~k~lkMSkqEvKdE~Ke~EG 224 (361)
T PRK08156 178 LVKLVLTFLACALIVLILDFIAEYFL-----HMKDMKMDKQEVKREYKEQEG 224 (361)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHCCCCHHHHHHHHHhccC
Confidence 33344444555555566777775533 334568888777666555443
No 135
>COG1615 Uncharacterized conserved protein [Function unknown]
Probab=47.11 E-value=1.4e+02 Score=31.80 Aligned_cols=34 Identities=18% Similarity=0.274 Sum_probs=24.6
Q ss_pred hhhcccccCccccCCccchhHHHHHHHHhHHHHH
Q 047952 110 VTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVG 143 (354)
Q Consensus 110 ~t~tTvGyGdi~P~t~~~r~~~~~~~l~Gi~~~~ 143 (354)
-++|.-||-|++...|.-.+++.+-++++++++.
T Consensus 220 g~~~GA~YTDI~~~lP~~~iL~aial~~aia~f~ 253 (885)
T COG1615 220 GTFTGAGYTDINAQLPAKLILIAIALLCAIAFFS 253 (885)
T ss_pred CcccccCceeeeeeccHHHHHHHHHHHHHHHHHH
Confidence 3667889999999888777776666666664443
No 136
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=45.66 E-value=11 Score=30.29 Aligned_cols=31 Identities=29% Similarity=0.256 Sum_probs=20.6
Q ss_pred CCHHHHHHHHHHhhhcCCCCCCccChhhhhh
Q 047952 316 ISQEDIALVMEEFQDLDFDQSGTLSPSDLFL 346 (354)
Q Consensus 316 ~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~~ 346 (354)
...+....+.=.|..||.|+||.|+..|+..
T Consensus 48 ~~~~~~~~~~W~F~~LD~n~d~~L~~~El~~ 78 (113)
T PF10591_consen 48 SYSECKRVVHWKFCQLDRNKDGVLDRSELKP 78 (113)
T ss_dssp TGGGGHHHHHHHHHHH--T-SSEE-TTTTGG
T ss_pred chhhhhhhhhhhHhhhcCCCCCccCHHHHHH
Confidence 3445555667789999999999999999865
No 137
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.26 E-value=58 Score=26.36 Aligned_cols=57 Identities=18% Similarity=0.397 Sum_probs=39.6
Q ss_pred hcccCCCccchHHHHHHHHH-----HcC-----CCCHHHHHHHHHH-hhhcCCCCCCccChhhhhhcc
Q 047952 292 ADIDEDGVVSAAEFIIYKLK-----EMG-----KISQEDIALVMEE-FQDLDFDQSGTLSPSDLFLAQ 348 (354)
Q Consensus 292 ~~l~~~g~v~~~e~v~~~l~-----~~~-----~~~~~~l~~i~~~-f~~ld~~~~g~l~~~d~~~~~ 348 (354)
-|+++++.++..|-+.+.-. ..| ..++.+++++.+. ++..|.|+||.|+-.+..-+|
T Consensus 76 HDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~q 143 (144)
T KOG4065|consen 76 HDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLKRQ 143 (144)
T ss_pred hccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHhhc
Confidence 35677777776654433221 222 4678888888876 888999999999988876554
No 138
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=42.74 E-value=1.5e+02 Score=31.63 Aligned_cols=41 Identities=27% Similarity=0.395 Sum_probs=21.0
Q ss_pred ccccCccccC-----CccchhHHHHHHHHh-HHHHHHhHHHHHHHHH
Q 047952 114 TVGYGDLVPN-----SVVSKLLSCAFVFTG-MGLVGMFLSKAADYLV 154 (354)
Q Consensus 114 TvGyGdi~P~-----t~~~r~~~~~~~l~G-i~~~~~~~~~~~~~~~ 154 (354)
++|.+|.... ...|.++.++|+++. +.++-++++.+++.+.
T Consensus 570 ~~G~~~~~~~~~~~~~~~~~il~~~y~~i~~ilLlNlLIAmm~~t~~ 616 (743)
T TIGR00870 570 IIGLGDLLANEHKFTEFVGLLLFGAYNVIMYILLLNMLIAMMGNTYQ 616 (743)
T ss_pred HcCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 4676665221 234555555555533 4455556666655554
No 139
>COG3462 Predicted membrane protein [Function unknown]
Probab=41.88 E-value=1.8e+02 Score=23.22 Aligned_cols=35 Identities=23% Similarity=0.298 Sum_probs=28.5
Q ss_pred cCCCccchHHHHHHHHHHcCCCCHHHHHHHHHHhh
Q 047952 295 DEDGVVSAAEFIIYKLKEMGKISQEDIALVMEEFQ 329 (354)
Q Consensus 295 ~~~g~v~~~e~v~~~l~~~~~~~~~~l~~i~~~f~ 329 (354)
++..+.++++-+.++=-..|.+++||-+++.+..+
T Consensus 82 d~~e~~sRA~eIlkER~AkGEItEEEY~r~~~~ir 116 (117)
T COG3462 82 DDAERGSRAEEILKERYAKGEITEEEYRRIIRTIR 116 (117)
T ss_pred cccccccHHHHHHHHHHhcCCCCHHHHHHHHHHhc
Confidence 44446788999999999999999999999887653
No 140
>KOG3599 consensus Ca2+-modulated nonselective cation channel polycystin [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=40.78 E-value=5.2e+02 Score=28.22 Aligned_cols=59 Identities=12% Similarity=0.139 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCC-ccccceeeeeeecccccCCcccCC--cCchHHHHHHHH
Q 047952 192 MLVLELVLILVGTIFLVVVEKMS-FVDAFYCVCSTITTLGYGDKSFST--TGGRAFGVVWIS 250 (354)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~e~~~-~~da~yf~~vT~tTVGyGD~~p~t--~~gr~~~~~~i~ 250 (354)
++.++++++..+.+++..+.++. =+-.+.-++.|+.-.=.||..|.+ +.+|++.+++..
T Consensus 596 ~l~~~I~~~aya~l~~llfG~~v~~f~~f~~s~~t~~~~~~G~~~~~~i~~~~r~LG~~~~~ 657 (798)
T KOG3599|consen 596 ALMFLILFFAYAQLGYLLFGNQVSDFRTFVASIVTLLRYILGDFCPAEIFHANRILGPLLFL 657 (798)
T ss_pred HHHHHHHHHHHHHHHHHHcCCccCChHHHHHHHHHHHHHHhccCCccccccCCchHHHHHHH
Confidence 34444444555555555555421 122334445555544456877764 356766665544
No 141
>PF14658 EF-hand_9: EF-hand domain
Probab=39.96 E-value=58 Score=23.55 Aligned_cols=51 Identities=18% Similarity=0.305 Sum_probs=33.6
Q ss_pred hhcccCCCccchHHHHHHHHHHcCC--CCHHHHHHHHHHhhhcCCCCC-CccChhhhh
Q 047952 291 AADIDEDGVVSAAEFIIYKLKEMGK--ISQEDIALVMEEFQDLDFDQS-GTLSPSDLF 345 (354)
Q Consensus 291 ~~~l~~~g~v~~~e~v~~~l~~~~~--~~~~~l~~i~~~f~~ld~~~~-g~l~~~d~~ 345 (354)
.-|-++.|+|... .++..|..++. .+++++ .+--.++|.++. |.++.++..
T Consensus 6 ~fD~~~tG~V~v~-~l~~~Lra~~~~~p~e~~L---q~l~~elDP~g~~~~v~~d~F~ 59 (66)
T PF14658_consen 6 AFDTQKTGRVPVS-DLITYLRAVTGRSPEESEL---QDLINELDPEGRDGSVNFDTFL 59 (66)
T ss_pred hcCCcCCceEeHH-HHHHHHHHHcCCCCcHHHH---HHHHHHhCCCCCCceEeHHHHH
Confidence 3455677777654 45555677766 344444 445667788888 999999864
No 142
>PF07077 DUF1345: Protein of unknown function (DUF1345); InterPro: IPR009781 This family consists of several hypothetical bacterial proteins of around 230 residues in length. The function of this family is unknown.
Probab=39.36 E-value=8.8 Score=33.57 Aligned_cols=48 Identities=13% Similarity=0.061 Sum_probs=40.3
Q ss_pred CCccccceeeeeeecccccCCcccCCcCchHHHHHHHHHHHHHHHHHH
Q 047952 213 MSFVDAFYCVCSTITTLGYGDKSFSTTGGRAFGVVWISSSTMTLAQFF 260 (354)
Q Consensus 213 ~~~~da~yf~~vT~tTVGyGD~~p~t~~gr~~~~~~i~~g~~~~~~~~ 260 (354)
-+|.|=+||+++.-+|-.=.|+.+.+..-|-.+..-.+++..+.+..+
T Consensus 131 P~y~DFlYfsftiG~t~q~SDv~v~s~~~Rr~vl~hsllSF~Fnt~il 178 (180)
T PF07077_consen 131 PDYWDFLYFSFTIGMTFQTSDVNVTSRRMRRLVLLHSLLSFFFNTVIL 178 (180)
T ss_pred CCchhhhHHHHHHHhhccccCCCcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999999999998888888877777766655554
No 143
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=38.82 E-value=32 Score=26.21 Aligned_cols=29 Identities=21% Similarity=0.292 Sum_probs=22.1
Q ss_pred HHHHHHHHHHhhh-cCCCCCC-ccChhhhhh
Q 047952 318 QEDIALVMEEFQD-LDFDQSG-TLSPSDLFL 346 (354)
Q Consensus 318 ~~~l~~i~~~f~~-ld~~~~g-~l~~~d~~~ 346 (354)
++.+..+.+.|.. .|.|++| +|+.+|+..
T Consensus 5 e~~i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ 35 (89)
T cd05023 5 ERCIESLIAVFQKYAGKDGDSYQLSKTEFLS 35 (89)
T ss_pred HHHHHHHHHHHHHHhccCCCcCeECHHHHHH
Confidence 4567778888888 7777876 888888754
No 144
>PF01312 Bac_export_2: FlhB HrpN YscU SpaS Family; InterPro: IPR006135 Salmonella, and related proteobacteria, secrete large amounts of proteins into the culture media. The major secreted proteins are either flagellar proteins or virulence factors [], secreted through the flagellar or virulence export structures respectively. Both secretion systems penetrate the inner and outer membranes and their components bear substantial sequence similarity. Both the flagellar and needle like pilus look fairly similar to each other []. The type III secretion system is of great interest, as it is used to transport virulence factors from the pathogen directly into the host cell [] and is only triggered when the bacterium comes into close contact with the host. It is believed that the family of type III flagellar and pilus inner membrane proteins are used as structural moieties in a complex with several other subunits []. One such set of inner membrane proteins, labeled "S" here for nomenclature purposes, includes the Salmonella and Shigella SpaS, the Yersinia YscU, Rhizobium Y4YO, and the Erwinia HrcU genes, Salmonella FlhB and Escherichia coli EscU [, , , ]. Many of the proteins, in this entry, undergo autocatalytic cleavage promoted by cyclization of a conserved asparagine. These proteins belong to the MEROPS peptidase family N6. ; GO: 0009306 protein secretion, 0016020 membrane; PDB: 3C03_C 3BZT_A 3BZV_B 3BZP_A 3BZX_B 3BZL_B 3C00_A 3BZR_A 3BZY_A 3BZO_A ....
Probab=38.69 E-value=7.7 Score=37.55 Aligned_cols=42 Identities=12% Similarity=0.253 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhhhcccCCC
Q 047952 252 STMTLAQFFLYVAEFNTEKRQKALVNWVLTRKMTHVDLEAADIDEDG 298 (354)
Q Consensus 252 g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~l~~~~l~~~g 298 (354)
..++..+++-.+.++..++++ +..+-+|++.|.+.+-.+.+|
T Consensus 190 ~~~~~~~~via~~D~~~qr~~-----~~k~lkMskqEvK~E~Ke~EG 231 (343)
T PF01312_consen 190 FAVLAALLVIAAIDFAYQRFE-----FEKKLKMSKQEVKDEHKESEG 231 (343)
T ss_dssp --------------------------------HHHHHH--HHHCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----HHHhCCCCHHHHHHHHHhccC
Confidence 333444444555666665432 222446666666555444443
No 145
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=38.56 E-value=47 Score=29.22 Aligned_cols=32 Identities=25% Similarity=0.481 Sum_probs=28.8
Q ss_pred CCCHHHHHHHHHHhhhcCCC-CCCccChhhhhh
Q 047952 315 KISQEDIALVMEEFQDLDFD-QSGTLSPSDLFL 346 (354)
Q Consensus 315 ~~~~~~l~~i~~~f~~ld~~-~~g~l~~~d~~~ 346 (354)
.-+.++|..++.+|..+|.+ ++|.++.+++..
T Consensus 26 ~fs~~EI~~L~~rF~kl~~~~~~g~lt~eef~~ 58 (187)
T KOG0034|consen 26 QFSANEIERLYERFKKLDRNNGDGYLTKEEFLS 58 (187)
T ss_pred ccCHHHHHHHHHHHHHhccccccCccCHHHHHH
Confidence 37789999999999999999 999999999754
No 146
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=37.84 E-value=38 Score=26.16 Aligned_cols=25 Identities=16% Similarity=0.197 Sum_probs=19.0
Q ss_pred CHHHHHHHHHHhhhcCCCCCCccChhhh
Q 047952 317 SQEDIALVMEEFQDLDFDQSGTLSPSDL 344 (354)
Q Consensus 317 ~~~~l~~i~~~f~~ld~~~~g~l~~~d~ 344 (354)
+++.+++ -+..||.|+||.++-.+.
T Consensus 46 d~~~vd~---im~~LD~n~Dg~vdF~EF 70 (91)
T cd05024 46 DPMAVDK---IMKDLDDCRDGKVGFQSF 70 (91)
T ss_pred CHHHHHH---HHHHhCCCCCCcCcHHHH
Confidence 5555544 567789999999998884
No 147
>PF03699 UPF0182: Uncharacterised protein family (UPF0182); InterPro: IPR005372 This family contains uncharacterised integral membrane proteins.; GO: 0016021 integral to membrane
Probab=34.83 E-value=6.3e+02 Score=27.47 Aligned_cols=16 Identities=44% Similarity=0.594 Sum_probs=8.6
Q ss_pred hcCCCCCCccChhhhh
Q 047952 330 DLDFDQSGTLSPSDLF 345 (354)
Q Consensus 330 ~ld~~~~g~l~~~d~~ 345 (354)
+-+.+.+..++++|+.
T Consensus 331 ~~~~~~~~~~t~~~l~ 346 (774)
T PF03699_consen 331 EEDFDASTNLTAEDLE 346 (774)
T ss_pred EEecCCCCCCCHhHhh
Confidence 3344555566666653
No 148
>PLN02964 phosphatidylserine decarboxylase
Probab=34.55 E-value=69 Score=33.79 Aligned_cols=51 Identities=16% Similarity=0.184 Sum_probs=36.4
Q ss_pred hhhcccCCCccchHHHHHHHHHHcC--CCCHHHHHHHHHHhhhcCCCCCCccChhhhh
Q 047952 290 EAADIDEDGVVSAAEFIIYKLKEMG--KISQEDIALVMEEFQDLDFDQSGTLSPSDLF 345 (354)
Q Consensus 290 ~~~~l~~~g~v~~~e~v~~~l~~~~--~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~ 345 (354)
...|.+++|.+ +...+...| ..++++...+.+-|.+.|.|++|.++.+|+.
T Consensus 150 ~lfD~dgdG~i-----Lg~ilrslG~~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl 202 (644)
T PLN02964 150 DLLDPSSSNKV-----VGSIFVSCSIEDPVETERSFARRILAIVDYDEDGQLSFSEFS 202 (644)
T ss_pred HHHCCCCCCcC-----HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHH
Confidence 34455677754 444566666 3566665567788889999999999999875
No 149
>COG1377 FlhB Flagellar biosynthesis pathway, component FlhB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=33.82 E-value=4.6e+02 Score=25.63 Aligned_cols=30 Identities=10% Similarity=0.175 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccccccchhhhccc
Q 047952 261 LYVAEFNTEKRQKALVNWVLTRKMTHVDLEAADID 295 (354)
Q Consensus 261 ~~i~~~~~~~~~~~~~~~~~~r~~~~~~l~~~~l~ 295 (354)
-.+.+++.+++ .+...-+|++.|.+.+-.+
T Consensus 204 ia~~D~~~qr~-----~~~k~lkMtKqEVKdE~K~ 233 (363)
T COG1377 204 VAAFDYFYQRF-----QYIKKLKMTKQEVKDEYKQ 233 (363)
T ss_pred HHHHHHHHHHH-----HHHHHccCcHHHHHHHHhh
Confidence 33455565443 2344567877776555444
No 150
>PLN03223 Polycystin cation channel protein; Provisional
Probab=33.81 E-value=1.6e+02 Score=33.86 Aligned_cols=57 Identities=19% Similarity=0.142 Sum_probs=32.1
Q ss_pred CcCCchhhhhhhhhhhcccccCc-----cccC----CccchhHHHHHHH-HhHHHHHHhHHHHHHHHHH
Q 047952 97 KTNEILDSIYFCIVTMTTVGYGD-----LVPN----SVVSKLLSCAFVF-TGMGLVGMFLSKAADYLVD 155 (354)
Q Consensus 97 ~~~~~~~a~yf~~~t~tTvGyGd-----i~P~----t~~~r~~~~~~~l-~Gi~~~~~~~~~~~~~~~~ 155 (354)
.+.++..|++-.+..+. |-.| +.+. ...|-++.+.|++ +.++++-++++.+.+.+.+
T Consensus 1358 ~FSTf~sSL~TLFqMLL--GDfdYF~eDLk~l~e~nrVLGPIYFfSFILLV~FILLNMFIAII~DSFsE 1424 (1634)
T PLN03223 1358 HFSDMTDSINSLFENLL--GDITYFNEDLKNLTGLQFVVGMIYFYSYNIFVFMILFNFLLAIICDAFGE 1424 (1634)
T ss_pred hhcCHHHHHHHHHHHHH--cCchHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777776666553 3222 1122 2345555555544 4566777777777776654
No 151
>PF08016 PKD_channel: Polycystin cation channel; InterPro: IPR013122 Polycystic kidney diseases (PKD) are disorders characterised by large numbers of cysts distributed throughout grossly-enlarged kidneys. Cyst development is associated with impairment of kidney function, and ultimately kidney failure and death []. Most cases of autosomal dominant PKD result from mutations in the PKD1 gene that cause premature protein termination. A second gene for autosomal dominant polycystic kidney disease has been identified by positional cloning []. The predicted 968-amino acid sequence of the PKD2 gene product (polycystin-2) contains 6 transmembrane domains, with intracellular N- and C-termini. Polycystin-2 shares some similarity with the family of voltage-activated calcium (and sodium) channels, and contains a potential calcium-binding domain. Polycystin-2 is strongly expressed in ovary, foetal and adult kidney, testis, and small intestine. Polycystin-1 requires the presence of this protein for stable expression and is believed to interact with it via its C terminus. All mutations between exons 1 and 11 result in a truncated polycystin-2 that lacks a calcium-binding EF-hand domain and the cytoplasmic domains required for the interaction of polycystin-2 with polycystin-1 []. PKD2, although clinically milder than PKD1, has a deleterious impact on life expectancy. This entry contains proteins belonging to the polycystin family including Mucolipin and Polycystin-1 and -2 (PKD1 and PKD2). The domain contains the cation channel region of PKD1 and PKD2 proteins. PKD1 and PKD2 may function through a common signalling pathway that is necessary for normal tubulogenesis. The PKD2 gene product has six transmembrane spans with intracellular amino- and carboxyl-termini []. Mucolipin is a cationic channel which probably plays a role in the endocytic pathway and in the control of membrane trafficking of proteins and lipids. It could play a major role in the calcium ion transport regulating lysosomal exocytosis [, , ].
Probab=33.66 E-value=3.7e+02 Score=26.53 Aligned_cols=21 Identities=19% Similarity=0.140 Sum_probs=10.3
Q ss_pred ccccceeeeeeecccccCCcc
Q 047952 215 FVDAFYCVCSTITTLGYGDKS 235 (354)
Q Consensus 215 ~~da~yf~~vT~tTVGyGD~~ 235 (354)
-+..+.-++.|+...-.||..
T Consensus 363 ~f~s~~~s~~tl~~~l~g~~~ 383 (425)
T PF08016_consen 363 DFSSFSSSLVTLFRMLLGDFD 383 (425)
T ss_pred ccCCHHHHHHHHHHHhcCCCc
Confidence 344555555555444445543
No 152
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=33.52 E-value=4.9e+02 Score=25.84 Aligned_cols=19 Identities=11% Similarity=0.095 Sum_probs=16.4
Q ss_pred eeeeeecccccCCcccCCc
Q 047952 221 CVCSTITTLGYGDKSFSTT 239 (354)
Q Consensus 221 f~~vT~tTVGyGD~~p~t~ 239 (354)
|..+|.-.+.+|++.|.+.
T Consensus 101 ~~~~t~l~~i~gEl~PK~~ 119 (429)
T COG1253 101 FAIITFLHVVFGELVPKSI 119 (429)
T ss_pred HHHHHhhhheeechhhhHH
Confidence 6778888899999999874
No 153
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=33.38 E-value=20 Score=28.34 Aligned_cols=19 Identities=21% Similarity=0.413 Sum_probs=10.0
Q ss_pred hhhcCCCCCCccChhhhhh
Q 047952 328 FQDLDFDQSGTLSPSDLFL 346 (354)
Q Consensus 328 f~~ld~~~~g~l~~~d~~~ 346 (354)
++--|.|++|.|+.++..+
T Consensus 49 W~LaD~~~dG~L~~~EF~i 67 (104)
T PF12763_consen 49 WNLADIDNDGKLDFEEFAI 67 (104)
T ss_dssp HHHH-SSSSSEEEHHHHHH
T ss_pred HhhhcCCCCCcCCHHHHHH
Confidence 3444556666666666544
No 154
>PRK12438 hypothetical protein; Provisional
Probab=33.07 E-value=7.4e+02 Score=27.75 Aligned_cols=32 Identities=16% Similarity=0.127 Sum_probs=18.9
Q ss_pred eecccccCCcccCCcCchHHHHHHHHHHHHHH
Q 047952 225 TITTLGYGDKSFSTTGGRAFGVVWISSSTMTL 256 (354)
Q Consensus 225 T~tTVGyGD~~p~t~~gr~~~~~~i~~g~~~~ 256 (354)
.++.-||-|+...=+...+++++-++++++++
T Consensus 244 ~~~GAgYTDv~a~LPa~~iL~~ia~i~Av~f~ 275 (991)
T PRK12438 244 TFTGAGYTDINAVLPAKLILVAIAVLCAVAFF 275 (991)
T ss_pred eEecCChhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 36778899987655444555554444444443
No 155
>COG2060 KdpA K+-transporting ATPase, A chain [Inorganic ion transport and metabolism]
Probab=32.71 E-value=5.6e+02 Score=26.27 Aligned_cols=152 Identities=14% Similarity=0.135 Sum_probs=73.2
Q ss_pred hhhhhhhhhhhcccccCcc--ccCCccchhHHHHHHHHhHH------------HHHHhHHHHHHHHHHHHHHHHHHHHhh
Q 047952 102 LDSIYFCIVTMTTVGYGDL--VPNSVVSKLLSCAFVFTGMG------------LVGMFLSKAADYLVDKQEILLVKALHR 167 (354)
Q Consensus 102 ~~a~yf~~~t~tTvGyGdi--~P~t~~~r~~~~~~~l~Gi~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (354)
..|+|=..+|-++-|--+- .--|+.|-++..+-+..|.+ ++.++.-.++..++-+.
T Consensus 334 ~SaLfav~TTa~s~GaVN~MHdS~tplGg~vpl~~m~L~~v~GGvG~Gl~~ml~fviltVFiagLMVGRT---------- 403 (560)
T COG2060 334 ASALFAVSTTAASCGAVNAMHDSLTPLGGMVPLFLMQLGEVFGGVGSGLYGMLLFVILTVFIAGLMVGRT---------- 403 (560)
T ss_pred HHHHHHHHHhhhcccchhhhhccccccccHHHHHHHHhCCCcCCcchhHHHHHHHHHHHHHHHHHhcCCC----------
Confidence 4577888888888885321 22377787777777765433 22222223333332222
Q ss_pred ccccCCccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhc---------CCccccce-eeeee-ecccccCCccc
Q 047952 168 YQKVGPTDILKEIETNKVRYKCIIMLVLELVLILVGTIFLVVVEK---------MSFVDAFY-CVCST-ITTLGYGDKSF 236 (354)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~---------~~~~da~y-f~~vT-~tTVGyGD~~p 236 (354)
|+-+-++++.++.++..+..+..-++.+...++..+.-+. ..+.+-+| |+..+ =..-||+...-
T Consensus 404 -----PEyLgkKIe~kEmk~~~L~iLv~PllvL~~~Aia~~~p~~~a~i~Npg~HG~SevLYa~tSaaaNNGS~F~Gl~~ 478 (560)
T COG2060 404 -----PEYLGKKIEAKEMKLAALAILVHPLLVLIFTAIALMLPGALASISNPGPHGFSEVLYAYTSAAANNGSAFAGLSA 478 (560)
T ss_pred -----HHHhcCccchhhHHHHHHHHHHHHHHHHHHHHHHHHCchHHhhCCCCCCccHHHHHHHHHhhcccCccccccccC
Confidence 2222233444444444333332222333333333333221 45566666 22221 12235666665
Q ss_pred CCcCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047952 237 STTGGRAFGVVWISSSTMTLAQFFLYVAEFNT 268 (354)
Q Consensus 237 ~t~~gr~~~~~~i~~g~~~~~~~~~~i~~~~~ 268 (354)
.|+..-+...+.+++|=-+.....-.++..+.
T Consensus 479 nt~f~N~~~g~~MllGRy~~Ii~~LaIAgsla 510 (560)
T COG2060 479 NTPFWNLTLGVAMLLGRFLPIIPVLAIAGSLA 510 (560)
T ss_pred CCchHhHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence 66666666666666665544444444444444
No 156
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=32.61 E-value=29 Score=19.07 Aligned_cols=15 Identities=33% Similarity=0.552 Sum_probs=10.4
Q ss_pred CCCCCCccChhhhhh
Q 047952 332 DFDQSGTLSPSDLFL 346 (354)
Q Consensus 332 d~~~~g~l~~~d~~~ 346 (354)
|.|+||.++.-|+.+
T Consensus 1 DvN~DG~vna~D~~~ 15 (21)
T PF00404_consen 1 DVNGDGKVNAIDLAL 15 (21)
T ss_dssp -TTSSSSSSHHHHHH
T ss_pred CCCCCCcCCHHHHHH
Confidence 567888888777654
No 157
>PF06781 UPF0233: Uncharacterised protein family (UPF0233); InterPro: IPR009619 This is a group of proteins of unknown function.
Probab=31.49 E-value=1.9e+02 Score=22.14 Aligned_cols=24 Identities=8% Similarity=0.030 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q 047952 68 FKRVLVYLAAYLGGGSLSFYAVNS 91 (354)
Q Consensus 68 ~~~~~~~l~~~l~~g~~~~~~~e~ 91 (354)
+..+.+.+++.-+++.++||+.+.
T Consensus 33 ~~p~m~~lmllGL~WiVvyYi~~~ 56 (87)
T PF06781_consen 33 YAPLMLGLMLLGLLWIVVYYISGG 56 (87)
T ss_pred HHHHHHHHHHHHHHHHhhhhcccC
Confidence 444555555666666777777665
No 158
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=31.35 E-value=44 Score=25.37 Aligned_cols=28 Identities=25% Similarity=0.350 Sum_probs=18.5
Q ss_pred HHHHHHHHHHhhhcCC-CC-CCccChhhhh
Q 047952 318 QEDIALVMEEFQDLDF-DQ-SGTLSPSDLF 345 (354)
Q Consensus 318 ~~~l~~i~~~f~~ld~-~~-~g~l~~~d~~ 345 (354)
++.+..+.+-|..-|. |+ +|.|+.+|+.
T Consensus 6 e~~~~~~i~~F~~y~~~~~~~g~Is~~EL~ 35 (88)
T cd05029 6 DQAIGLLVAIFHKYSGREGDKNTLSKKELK 35 (88)
T ss_pred HHHHHHHHHHHHHHHccCCCCCEECHHHHH
Confidence 4556666667777776 55 6777777754
No 159
>PF08016 PKD_channel: Polycystin cation channel; InterPro: IPR013122 Polycystic kidney diseases (PKD) are disorders characterised by large numbers of cysts distributed throughout grossly-enlarged kidneys. Cyst development is associated with impairment of kidney function, and ultimately kidney failure and death []. Most cases of autosomal dominant PKD result from mutations in the PKD1 gene that cause premature protein termination. A second gene for autosomal dominant polycystic kidney disease has been identified by positional cloning []. The predicted 968-amino acid sequence of the PKD2 gene product (polycystin-2) contains 6 transmembrane domains, with intracellular N- and C-termini. Polycystin-2 shares some similarity with the family of voltage-activated calcium (and sodium) channels, and contains a potential calcium-binding domain. Polycystin-2 is strongly expressed in ovary, foetal and adult kidney, testis, and small intestine. Polycystin-1 requires the presence of this protein for stable expression and is believed to interact with it via its C terminus. All mutations between exons 1 and 11 result in a truncated polycystin-2 that lacks a calcium-binding EF-hand domain and the cytoplasmic domains required for the interaction of polycystin-2 with polycystin-1 []. PKD2, although clinically milder than PKD1, has a deleterious impact on life expectancy. This entry contains proteins belonging to the polycystin family including Mucolipin and Polycystin-1 and -2 (PKD1 and PKD2). The domain contains the cation channel region of PKD1 and PKD2 proteins. PKD1 and PKD2 may function through a common signalling pathway that is necessary for normal tubulogenesis. The PKD2 gene product has six transmembrane spans with intracellular amino- and carboxyl-termini []. Mucolipin is a cationic channel which probably plays a role in the endocytic pathway and in the control of membrane trafficking of proteins and lipids. It could play a major role in the calcium ion transport regulating lysosomal exocytosis [, , ].
Probab=30.59 E-value=2.5e+02 Score=27.80 Aligned_cols=15 Identities=7% Similarity=-0.055 Sum_probs=8.2
Q ss_pred CcCCchhhhhhhhhh
Q 047952 97 KTNEILDSIYFCIVT 111 (354)
Q Consensus 97 ~~~~~~~a~yf~~~t 111 (354)
.+.++..|+.-.+..
T Consensus 363 ~f~s~~~s~~tl~~~ 377 (425)
T PF08016_consen 363 DFSSFSSSLVTLFRM 377 (425)
T ss_pred ccCCHHHHHHHHHHH
Confidence 345666666555443
No 160
>COG1226 Kch Kef-type K+ transport systems, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=30.11 E-value=33 Score=29.05 Aligned_cols=47 Identities=26% Similarity=0.272 Sum_probs=35.6
Q ss_pred CCchhhhhhhhhhhcccccCccccCCccchhHHHHHHHHhHHHHHHh
Q 047952 99 NEILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGMF 145 (354)
Q Consensus 99 ~~~~~a~yf~~~t~tTvGyGdi~P~t~~~r~~~~~~~l~Gi~~~~~~ 145 (354)
....+..|+...+++++||+++.|.+..+.......++.+.......
T Consensus 116 ~~~~~~~~~~~~~l~~~G~~~vi~~~~~~~~~~~~~~~~~~~~~~~~ 162 (212)
T COG1226 116 LARARDLDEAVETLTTVGADEVVPPTFESALLLARAALVGLGGDSVE 162 (212)
T ss_pred EEEeccchHHHHHHHHcCCCeeecHHHHHHHHHHHHHhcccCCchhh
Confidence 46677788888999999999999988777776666666555544443
No 161
>COG1226 Kch Kef-type K+ transport systems, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=29.63 E-value=20 Score=30.46 Aligned_cols=43 Identities=12% Similarity=-0.069 Sum_probs=31.2
Q ss_pred CCccccceeeeeeecccccCCcccCCcCchHHHHHHHHHHHHH
Q 047952 213 MSFVDAFYCVCSTITTLGYGDKSFSTTGGRAFGVVWISSSTMT 255 (354)
Q Consensus 213 ~~~~da~yf~~vT~tTVGyGD~~p~t~~gr~~~~~~i~~g~~~ 255 (354)
....+..|+...+++++|||+++|.+..+.......+..+...
T Consensus 116 ~~~~~~~~~~~~~l~~~G~~~vi~~~~~~~~~~~~~~~~~~~~ 158 (212)
T COG1226 116 LARARDLDEAVETLTTVGADEVVPPTFESALLLARAALVGLGG 158 (212)
T ss_pred EEEeccchHHHHHHHHcCCCeeecHHHHHHHHHHHHHhcccCC
Confidence 4567788888899999999999988766665555544444433
No 162
>PF06166 DUF979: Protein of unknown function (DUF979); InterPro: IPR009323 This family consists of several putative bacterial membrane proteins. The function of this family is unclear.
Probab=29.56 E-value=1.6e+02 Score=27.87 Aligned_cols=43 Identities=21% Similarity=0.172 Sum_probs=27.0
Q ss_pred ecccccCCcccC------CcCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047952 226 ITTLGYGDKSFS------TTGGRAFGVVWISSSTMTLAQFFLYVAEFNT 268 (354)
Q Consensus 226 ~tTVGyGD~~p~------t~~gr~~~~~~i~~g~~~~~~~~~~i~~~~~ 268 (354)
+|.-|-||.+-. ....+.+.++--.+|.+++++..++-...|.
T Consensus 177 F~~AGVG~vIa~lv~~viP~g~~~~~ViaYclGMalFTmIMGNAFAAF~ 225 (308)
T PF06166_consen 177 FTAAGVGDVIASLVSSVIPEGNRFIGVIAYCLGMALFTMIMGNAFAAFP 225 (308)
T ss_pred HHhcCccHHHHHHHHhhcCCCCeehhHHHHHHHHHHHHHHHccHHHHhH
Confidence 344466775421 1234667777777888888888877665554
No 163
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=29.36 E-value=43 Score=30.68 Aligned_cols=33 Identities=33% Similarity=0.373 Sum_probs=21.1
Q ss_pred chhhhcccCCCccchHHHHHHHHHHcCCCCHHH
Q 047952 288 DLEAADIDEDGVVSAAEFIIYKLKEMGKISQED 320 (354)
Q Consensus 288 ~l~~~~l~~~g~v~~~e~v~~~l~~~~~~~~~~ 320 (354)
...+.|-+++|.|+..||-.+.+...|+-..+-
T Consensus 145 hFraVDpdgDGhvsWdEykvkFlaskghsekev 177 (362)
T KOG4251|consen 145 HFRAVDPDGDGHVSWDEYKVKFLASKGHSEKEV 177 (362)
T ss_pred heeeeCCCCCCceehhhhhhHHHhhcCcchHHH
Confidence 345556667777777777777666665544444
No 164
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=29.29 E-value=80 Score=24.90 Aligned_cols=20 Identities=45% Similarity=0.604 Sum_probs=14.7
Q ss_pred hhhcccCCCccchHHHHHHH
Q 047952 290 EAADIDEDGVVSAAEFIIYK 309 (354)
Q Consensus 290 ~~~~l~~~g~v~~~e~v~~~ 309 (354)
...|.+++|.++..||++++
T Consensus 50 ~LaD~~~dG~L~~~EF~iAm 69 (104)
T PF12763_consen 50 NLADIDNDGKLDFEEFAIAM 69 (104)
T ss_dssp HHH-SSSSSEEEHHHHHHHH
T ss_pred hhhcCCCCCcCCHHHHHHHH
Confidence 45577788888888888876
No 165
>PF10011 DUF2254: Predicted membrane protein (DUF2254); InterPro: IPR018723 Members of this family of proteins comprises various hypothetical and putative membrane proteins. Their exact function, has not, as yet, been defined.
Probab=28.36 E-value=3.2e+02 Score=26.62 Aligned_cols=54 Identities=13% Similarity=0.284 Sum_probs=38.5
Q ss_pred CchhhhhhhhhhhcccccCccccCCccchhHHHHHHHHhHHHHHHhHHHHHHHH
Q 047952 100 EILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGMFLSKAADYL 153 (354)
Q Consensus 100 ~~~~a~yf~~~t~tTvGyGdi~P~t~~~r~~~~~~~l~Gi~~~~~~~~~~~~~~ 153 (354)
.|..+|-||+..+-+++=++.......+-.+++++.+..+..+.+++..+...+
T Consensus 100 ~Figtfvy~l~~l~~i~~~~~~~~p~~~~~~a~~l~i~~v~~li~fI~~i~~~i 153 (371)
T PF10011_consen 100 TFIGTFVYSLLVLIAIRSGDYGSVPRLSVFIALALAILSVVLLIYFIHHIARSI 153 (371)
T ss_pred HHHHHHHHHHHHHHHccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 578889999999998886665333344456666777777777877777766544
No 166
>KOG3491 consensus Predicted membrane protein [Function unknown]
Probab=28.25 E-value=1.2e+02 Score=21.29 Aligned_cols=29 Identities=14% Similarity=0.339 Sum_probs=19.6
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 047952 183 NKVRYKCIIMLVLELVLILVGTIFLVVVE 211 (354)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 211 (354)
.+..++..-.++.+++++++|+.+|.++.
T Consensus 31 ~e~kypvgPwLlglFvFVVcGSa~FqIIr 59 (65)
T KOG3491|consen 31 KEKKYPVGPWLLGLFVFVVCGSALFQIIR 59 (65)
T ss_pred ccccCCcchHHHHHHHHHhhcHHHHHHHH
Confidence 34445555555667778889999887664
No 167
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=27.96 E-value=3.8e+02 Score=22.79 Aligned_cols=23 Identities=30% Similarity=0.593 Sum_probs=13.4
Q ss_pred hhHHHHHHHHhHHHHHHhHHHHH
Q 047952 128 KLLSCAFVFTGMGLVGMFLSKAA 150 (354)
Q Consensus 128 r~~~~~~~l~Gi~~~~~~~~~~~ 150 (354)
-.+..-..++|+.++++..+.+.
T Consensus 98 ~~~~~S~~~Fg~gllGisYGilS 120 (153)
T PF11947_consen 98 AVLLVSLVFFGLGLLGISYGILS 120 (153)
T ss_pred HHHHHHHHHHHHHHHhhhhhhcc
Confidence 34444455666777776666554
No 168
>PRK12438 hypothetical protein; Provisional
Probab=26.91 E-value=2.9e+02 Score=30.81 Aligned_cols=30 Identities=20% Similarity=0.298 Sum_probs=17.2
Q ss_pred hcccccCccccCCccchhHHHHHHHHhHHH
Q 047952 112 MTTVGYGDLVPNSVVSKLLSCAFVFTGMGL 141 (354)
Q Consensus 112 ~tTvGyGdi~P~t~~~r~~~~~~~l~Gi~~ 141 (354)
++..||-|++..=|.-.+++++-+++++.+
T Consensus 245 ~~GAgYTDv~a~LPa~~iL~~ia~i~Av~f 274 (991)
T PRK12438 245 FTGAGYTDINAVLPAKLILVAIAVLCAVAF 274 (991)
T ss_pred EecCChhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 567788888875554444444444444333
No 169
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=26.76 E-value=83 Score=21.51 Aligned_cols=21 Identities=33% Similarity=0.396 Sum_probs=16.3
Q ss_pred HHHhhhcCCCCCCccChhhhh
Q 047952 325 MEEFQDLDFDQSGTLSPSDLF 345 (354)
Q Consensus 325 ~~~f~~ld~~~~g~l~~~d~~ 345 (354)
..-|.+-|.++||.|+-+++.
T Consensus 24 ~~LFq~~D~s~~g~Le~~Ef~ 44 (51)
T PF14788_consen 24 RQLFQECDKSQSGRLEGEEFE 44 (51)
T ss_dssp HHHHHHH-SSSSSEBEHHHHH
T ss_pred HHHHHHhcccCCCCccHHHHH
Confidence 346899999999999988864
No 170
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.50 E-value=2.7e+02 Score=20.34 Aligned_cols=26 Identities=35% Similarity=0.461 Sum_probs=20.0
Q ss_pred HHHHHHHHHcC-CCCHHHHHHHHHHhh
Q 047952 304 EFIIYKLKEMG-KISQEDIALVMEEFQ 329 (354)
Q Consensus 304 e~v~~~l~~~~-~~~~~~l~~i~~~f~ 329 (354)
|-+..++.++| |-++..++++.++..
T Consensus 42 ~~iR~M~~qmGqKpSe~kI~Qvm~~i~ 68 (71)
T COG3763 42 EMIRMMMAQMGQKPSEKKINQVMRSII 68 (71)
T ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 46777788888 678888988887654
No 171
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=24.34 E-value=69 Score=32.13 Aligned_cols=49 Identities=24% Similarity=0.405 Sum_probs=41.6
Q ss_pred ccCCCccchHHHHHHHHHHcCCCCHHHHHHHHHHhhhcCCCCCCccChhhhh
Q 047952 294 IDEDGVVSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDLF 345 (354)
Q Consensus 294 l~~~g~v~~~e~v~~~l~~~~~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~ 345 (354)
...+|+++-.+|+-..|...++-++.-++= =|+-+|.+++|.|+.+|+.
T Consensus 326 ~~~eGrmdykdFv~FilA~e~k~t~~SleY---wFrclDld~~G~Lt~~el~ 374 (493)
T KOG2562|consen 326 VKVEGRMDYKDFVDFILAEEDKDTPASLEY---WFRCLDLDGDGILTLNELR 374 (493)
T ss_pred eeecCcccHHHHHHHHHHhccCCCccchhh---heeeeeccCCCcccHHHHH
Confidence 356778999999999999999988877754 4999999999999999974
No 172
>PRK00159 putative septation inhibitor protein; Reviewed
Probab=23.58 E-value=3.4e+02 Score=20.76 Aligned_cols=25 Identities=8% Similarity=-0.053 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhc
Q 047952 68 FKRVLVYLAAYLGGGSLSFYAVNSQ 92 (354)
Q Consensus 68 ~~~~~~~l~~~l~~g~~~~~~~e~~ 92 (354)
+..+.+.+++.-++..++||+.+.+
T Consensus 33 ~~~~m~glm~~GllWlvvyYl~~~~ 57 (87)
T PRK00159 33 YVVLMLGLMLIGLAWLVVNYLAGPA 57 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCC
Confidence 4445555555666667777776543
No 173
>PRK00068 hypothetical protein; Validated
Probab=23.50 E-value=3.7e+02 Score=29.92 Aligned_cols=28 Identities=18% Similarity=0.196 Sum_probs=16.8
Q ss_pred hcccccCccccCCccchhHHHHHHHHhH
Q 047952 112 MTTVGYGDLVPNSVVSKLLSCAFVFTGM 139 (354)
Q Consensus 112 ~tTvGyGdi~P~t~~~r~~~~~~~l~Gi 139 (354)
++..||-|++..=|.-.+++++-+++++
T Consensus 245 v~GA~YTDv~a~Lpa~~iL~~ia~i~a~ 272 (970)
T PRK00068 245 FTGASYTDINAVLPAKLILLVIAVICAI 272 (970)
T ss_pred EecCChHhhhhHHHHHHHHHHHHHHHHH
Confidence 5678899988765544444444443333
No 174
>PF10710 DUF2512: Protein of unknown function (DUF2512); InterPro: IPR019649 Proteins in this entry are predicted to be integral membrane proteins, and many of them are annotated as being YndM protein. They are all found in Firmicutes. The true function is not known.
Probab=23.15 E-value=4e+02 Score=22.07 Aligned_cols=31 Identities=29% Similarity=0.220 Sum_probs=21.8
Q ss_pred HHHHhcCCccccceeeeeeeccccc--CCcc--cCC
Q 047952 207 LVVVEKMSFVDAFYCVCSTITTLGY--GDKS--FST 238 (354)
Q Consensus 207 ~~~~e~~~~~da~yf~~vT~tTVGy--GD~~--p~t 238 (354)
+...-+.++.+.+..+.+. |.|+| ||.. |.+
T Consensus 22 L~~~~~~sf~~~l~~sl~l-tvvaY~iGDl~ILPr~ 56 (136)
T PF10710_consen 22 LGLFFGASFGDILLISLVL-TVVAYLIGDLFILPRT 56 (136)
T ss_pred HHHHcCCCHHHHHHHHHHH-HHHHHHHHHHheeeCC
Confidence 3345568888988888663 67888 9964 653
No 175
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=21.46 E-value=1.2e+02 Score=30.29 Aligned_cols=56 Identities=27% Similarity=0.431 Sum_probs=38.4
Q ss_pred hhhhcccCCCccchHHHHHHH--HH--HcCCCCHHHHHHHHHHhhhcCCCCCCccChhhhhhc
Q 047952 289 LEAADIDEDGVVSAAEFIIYK--LK--EMGKISQEDIALVMEEFQDLDFDQSGTLSPSDLFLA 347 (354)
Q Consensus 289 l~~~~l~~~g~v~~~e~v~~~--l~--~~~~~~~~~l~~i~~~f~~ld~~~~g~l~~~d~~~~ 347 (354)
..+.|.|+.|.++-.||.... |. ..+.++..++. +..+..|.|+||.++..++..|
T Consensus 553 F~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~---~la~~mD~NkDG~IDlNEfLeA 612 (631)
T KOG0377|consen 553 FNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEIL---ELARSMDLNKDGKIDLNEFLEA 612 (631)
T ss_pred HHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHH---HHHHhhccCCCCcccHHHHHHH
Confidence 346677899999988876542 21 23345555554 4556779999999999997653
No 176
>PF06624 RAMP4: Ribosome associated membrane protein RAMP4; InterPro: IPR010580 This entry contains Serp1/Ramp4, which has been shown to interacts with target proteins during their translocation into the lumen of the endoplasmic reticulum. It has also been shown to protect unfolded target proteins against degradation during ER stress. It may facilitate glycosylation of target proteins after termination of ER stress and may modulate the use of N-glycosylation sites on target proteins [, ].
Probab=21.13 E-value=56 Score=23.37 Aligned_cols=26 Identities=12% Similarity=0.331 Sum_probs=18.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHH
Q 047952 185 VRYKCIIMLVLELVLILVGTIFLVVV 210 (354)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (354)
..+++.-.++.+++++++|+.+|-.+
T Consensus 33 ~k~pVgp~~L~l~iFVV~Gs~ifqii 58 (63)
T PF06624_consen 33 KKYPVGPWLLGLFIFVVCGSAIFQII 58 (63)
T ss_pred ccCCcCHHHHhhhheeeEcHHHHHHH
Confidence 45566666677788888999888654
No 177
>KOG2302 consensus T-type voltage-gated Ca2+ channel, pore-forming alpha1I subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=20.81 E-value=1.3e+03 Score=26.31 Aligned_cols=29 Identities=21% Similarity=0.151 Sum_probs=17.8
Q ss_pred cCCcchHHHHHHHHHHHHHHHHHHHHHhh
Q 047952 62 GKPRPNFKRVLVYLAAYLGGGSLSFYAVN 90 (354)
Q Consensus 62 ~~~~~~~~~~~~~l~~~l~~g~~~~~~~e 90 (354)
..+++....+++.+.+++++|++.-.+..
T Consensus 1255 sSLkpIgnIvliccaffiiFgilgvqLFk 1283 (1956)
T KOG2302|consen 1255 SSLKPIGNIVLICCAFFIIFGILGVQLFK 1283 (1956)
T ss_pred hccccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34555555566666667777777765554
No 178
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=20.67 E-value=97 Score=25.26 Aligned_cols=13 Identities=8% Similarity=0.151 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHHH
Q 047952 250 SSSTMTLAQFFLY 262 (354)
Q Consensus 250 ~~g~~~~~~~~~~ 262 (354)
+++++++.+++-.
T Consensus 4 l~~iii~~i~l~~ 16 (130)
T PF12273_consen 4 LFAIIIVAILLFL 16 (130)
T ss_pred eHHHHHHHHHHHH
Confidence 3333333333333
No 179
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=20.46 E-value=1.7e+02 Score=29.09 Aligned_cols=50 Identities=30% Similarity=0.521 Sum_probs=35.6
Q ss_pred hhhcccCCCccchHHHHHHHHHHcC-CCCHHHHHHHHHHhhhcCCCCCCccChhh
Q 047952 290 EAADIDEDGVVSAAEFIIYKLKEMG-KISQEDIALVMEEFQDLDFDQSGTLSPSD 343 (354)
Q Consensus 290 ~~~~l~~~g~v~~~e~v~~~l~~~~-~~~~~~l~~i~~~f~~ld~~~~g~l~~~d 343 (354)
...|.+++|.++..| +-..|++.| .++.|+.+. -|+..|.|+++.++.++
T Consensus 89 ~~iD~~hdG~i~~~E-i~~~l~~~gi~l~de~~~k---~~e~~d~~g~~~I~~~e 139 (463)
T KOG0036|consen 89 QSIDLEHDGKIDPNE-IWRYLKDLGIQLSDEKAAK---FFEHMDKDGKATIDLEE 139 (463)
T ss_pred hhhccccCCccCHHH-HHHHHHHhCCccCHHHHHH---HHHHhccCCCeeeccHH
Confidence 455778899988766 455567776 466666555 47777889999888776
Done!