RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 047952
(354 letters)
>3ukm_A Potassium channel subfamily K member 1; membrane protein,
eukaryotic, two-pore DO potassium channel, K2P channel,
membrane; HET: UND; 3.40A {Homo sapiens}
Length = 280
Score = 94.1 bits (233), Expect = 3e-22
Identities = 32/210 (15%), Positives = 71/210 (33%), Gaps = 15/210 (7%)
Query: 86 FYAVNSQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGMF 145
+V SQ G + +++F ++T GYG VP S K + G+ +F
Sbjct: 79 GVSVLSQASGNWNWDFTSALFFASTVLSTTGYGHTVPLSDGGKAFCIIYSVIGIPFTLLF 138
Query: 146 LSKAADYLVDKQEILLVKALHRYQKVGPTDILKEIETNKVRYKCIIMLVLELVLILVGTI 205
L+ + V H + V + + + + +
Sbjct: 139 LTAVVQRITVHVTRRPVLYFHIRWGFSKQVV------AIVHAVLLGFVTVSCFFFIPAAV 192
Query: 206 FLVVVEKMSFVDAFYCVCSTITTLGYGDKSFSTTGG-------RAFGVVWISSSTMTLAQ 258
F V+ + +F+++FY +++T+G GD + ++ + +
Sbjct: 193 FSVLEDDWNFLESFYFCFISLSTIGLGDYVPGEGYNQKFRELYKIGITCYLLLGLIAMLV 252
Query: 259 FFLYVAEFNTEKRQKALVNWVLTRKMTHVD 288
E + K+ + + + + VD
Sbjct: 253 VLETFCELHELKKFRKMF--YVKKDKDEVD 280
>3um7_A Potassium channel subfamily K member 4; potassium ION channel,
metal transport; 3.31A {Homo sapiens}
Length = 309
Score = 91.4 bits (226), Expect = 4e-21
Identities = 34/189 (17%), Positives = 68/189 (35%), Gaps = 11/189 (5%)
Query: 104 SIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGMFLSKAADYLVDKQEILLVK 163
+ +F +TT+GYG++ + +L + G+ L G+ L+ D L +
Sbjct: 119 AFFFSGTIITTIGYGNVALRTDAGRLFCIFYALVGIPLFGILLAGVGDRLGSSLRHGIGH 178
Query: 164 ALHRYQKVGPTDILKEIETNKVRYKCIIMLVLELVLILVGTIFLVVVEKMSFVDAFYCVC 223
+ K E +V + +L+ L+ +L T +E S ++A Y V
Sbjct: 179 IEAIFLKWHVPP-----ELVRVLSAMLFLLIGCLLFVLTPTFVFCYMEDWSKLEAIYFVI 233
Query: 224 STITTLGYGD------KSFSTTGGRAFGVVWISSSTMTLAQFFLYVAEFNTEKRQKALVN 277
T+TT+G+GD + + WI A + + ++
Sbjct: 234 VTLTTVGFGDYVAGADPRQDSPAYQPLVWFWILLGLAYFASVLTTIGNWLRVVSRRTRAE 293
Query: 278 WVLTRKMTH 286
++
Sbjct: 294 MGGLTAQSN 302
Score = 54.5 bits (130), Expect = 2e-08
Identities = 22/106 (20%), Positives = 41/106 (38%), Gaps = 13/106 (12%)
Query: 64 PRPNFKRVLVYLAAYLGGGSLSFYAVNSQIEGLKTNEILDSIYFCIVTMTTVGYGDLVP- 122
+L+ ++ + F +E L++IYF IVT+TTVG+GD V
Sbjct: 195 VLSAMLFLLIGCLLFVLTPTFVF----CYMED---WSKLEAIYFVIVTLTTVGFGDYVAG 247
Query: 123 -----NSVVSKLLSCAFVFTGMGLVGMFLSKAADYLVDKQEILLVK 163
+S + L ++ G+ L+ ++L +
Sbjct: 248 ADPRQDSPAYQPLVWFWILLGLAYFASVLTTIGNWLRVVSRRTRAE 293
Score = 35.2 bits (80), Expect = 0.026
Identities = 13/85 (15%), Positives = 26/85 (30%)
Query: 194 VLELVLILVGTIFLVVVEKMSFVDAFYCVCSTITTLGYGDKSFSTTGGRAFGVVWISSST 253
+ + AF+ + ITT+GYG+ + T GR F + +
Sbjct: 95 LGGGADPETQSTSQSSHSAWDLGSAFFFSGTIITTIGYGNVALRTDAGRLFCIFYALVGI 154
Query: 254 MTLAQFFLYVAEFNTEKRQKALVNW 278
V + + + +
Sbjct: 155 PLFGILLAGVGDRLGSSLRHGIGHI 179
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein;
1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A
3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A
3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A
Length = 97
Score = 77.9 bits (192), Expect = 3e-18
Identities = 25/93 (26%), Positives = 51/93 (54%), Gaps = 3/93 (3%)
Query: 190 IIMLVLELVLILVGTIFLVVVEKMSFVDAFYCVCSTITTLGYGDKSFSTTGGRAFGVVWI 249
++ VL ++ ++ GTIF VE + +DA Y T+TT+GYGD S T G+ F +++I
Sbjct: 8 QVLFVLTILTLISGTIFYSTVEGLRPIDALYFSVVTLTTVGYGDFSPQTDFGKIFTILYI 67
Query: 250 SSSTMTLAQFFLYVAEFNTEKRQKALVNWVLTR 282
+ + F ++ + + ++++ ++ R
Sbjct: 68 ---FIGIGLVFGFIHKLAVNVQLPSILSNLVPR 97
Score = 72.6 bits (178), Expect = 3e-16
Identities = 31/103 (30%), Positives = 53/103 (51%), Gaps = 9/103 (8%)
Query: 65 RPNFKRVLVYLAAYLGGGSLSFYAVNSQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNS 124
F+ + V L G++ + +EGL+ +D++YF +VT+TTVGYGD P +
Sbjct: 4 DKEFQVLFVLTILTLISGTIFYS----TVEGLR---PIDALYFSVVTLTTVGYGDFSPQT 56
Query: 125 VVSKLLSCAFVFTGMGLVGMFLSKAADYLVDKQEILLVKALHR 167
K+ + ++F G+GLV F+ K A + +L + R
Sbjct: 57 DFGKIFTILYIFIGIGLVFGFIHKLAVNVQ--LPSILSNLVPR 97
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel;
4-helical bundle, ION channel, membrane, transport
protein; 3.20A {Bacillus weihenstephanensis}
Length = 148
Score = 78.4 bits (193), Expect = 7e-18
Identities = 29/134 (21%), Positives = 55/134 (41%), Gaps = 7/134 (5%)
Query: 176 ILKEIETNKVRYKCIIMLVLELVLILVGTIFLVVVEKMSFVDAFYCVCSTITTLGYGDKS 235
+LK + ++ VL + + GTIF VE + +DA Y T+TT+G G+ S
Sbjct: 14 MLKACLRAWKDKEFQVLFVLTFLTLTSGTIFYSTVEGLRPLDALYFSVVTLTTVGDGNFS 73
Query: 236 FSTTGGRAFGVVWI-------SSSTMTLAQFFLYVAEFNTEKRQKALVNWVLTRKMTHVD 288
T G+ F +++I LA + + K++ + K+ ++
Sbjct: 74 PQTDFGKVFTILYIFIGIGLVFGFIHKLAVNVQLPSILSNRKKETDAYRLEVMEKLEAIE 133
Query: 289 LEAADIDEDGVVSA 302
+ A+ G +
Sbjct: 134 KKLAEHSRQGSLVP 147
Score = 75.4 bits (185), Expect = 9e-17
Identities = 29/118 (24%), Positives = 58/118 (49%), Gaps = 10/118 (8%)
Query: 65 RPNFKRVLVYLAAYLGGGSLSFYAVNSQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNS 124
F+ + V L G++ + +EGL+ LD++YF +VT+TTVG G+ P +
Sbjct: 24 DKEFQVLFVLTFLTLTSGTIFYS----TVEGLR---PLDALYFSVVTLTTVGDGNFSPQT 76
Query: 125 VVSKLLSCAFVFTGMGLVGMFLSKAADYLVDKQEILLVKALHRYQKVGPTDILKEIET 182
K+ + ++F G+GLV F+ K A + ++ + ++++++E
Sbjct: 77 DFGKVFTILYIFIGIGLVFGFIHKLAVNVQLPS---ILSNRKKETDAYRLEVMEKLEA 131
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer,
central cavity, ION metal transport, membrane protein;
2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A
2ahz_A
Length = 114
Score = 76.8 bits (189), Expect = 1e-17
Identities = 24/107 (22%), Positives = 54/107 (50%), Gaps = 3/107 (2%)
Query: 176 ILKEIETNKVRYKCIIMLVLELVLILVGTIFLVVVEKMSFVDAFYCVCSTITTLGYGDKS 235
+L+ + ++ VL ++ ++ GTIF VE + +DA Y T+TT+G G+ S
Sbjct: 11 MLRACLRAWKDKEFQVLFVLTILTLISGTIFYSTVEGLRPIDALYFSVVTLTTVGAGNFS 70
Query: 236 FSTTGGRAFGVVWISSSTMTLAQFFLYVAEFNTEKRQKALVNWVLTR 282
T G+ F +++I + + F ++ + + ++++ ++ R
Sbjct: 71 PQTDFGKIFTILYI---FIGIGLVFGFIHKLAVNVQLPSILSNLVPR 114
Score = 74.5 bits (183), Expect = 7e-17
Identities = 28/95 (29%), Positives = 50/95 (52%), Gaps = 7/95 (7%)
Query: 65 RPNFKRVLVYLAAYLGGGSLSFYAVNSQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNS 124
F+ + V L G++ + S +EGL+ +D++YF +VT+TTVG G+ P +
Sbjct: 21 DKEFQVLFVLTILTLISGTIFY----STVEGLR---PIDALYFSVVTLTTVGAGNFSPQT 73
Query: 125 VVSKLLSCAFVFTGMGLVGMFLSKAADYLVDKQEI 159
K+ + ++F G+GLV F+ K A + +
Sbjct: 74 DFGKIFTILYIFIGIGLVFGFIHKLAVNVQLPSIL 108
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel,
open conformation, IO transport; 1.45A
{Methanothermobacter thermautotrophicusorganism_taxid}
PDB: 3lde_A 3r65_A 3ous_A 3ldd_A
Length = 82
Score = 74.3 bits (183), Expect = 4e-17
Identities = 23/87 (26%), Positives = 44/87 (50%), Gaps = 7/87 (8%)
Query: 68 FKRVLVYLAAYLGGGSLSFYAVNSQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVS 127
R+L+ + A + G+ F+ IEG S+Y+ VT+ TVGYGD P++ +
Sbjct: 3 ATRILLLVLAVIIYGTAGFHF----IEGE---SWTVSLYWTFVTIATVGYGDYSPHTPLG 55
Query: 128 KLLSCAFVFTGMGLVGMFLSKAADYLV 154
+C + G+G + + + ++L+
Sbjct: 56 MYFTCTLIVLGIGTFAVAVERLLEFLI 82
Score = 60.8 bits (148), Expect = 3e-12
Identities = 25/77 (32%), Positives = 34/77 (44%)
Query: 190 IIMLVLELVLILVGTIFLVVVEKMSFVDAFYCVCSTITTLGYGDKSFSTTGGRAFGVVWI 249
+L+L L +I+ GT +E S+ + Y TI T+GYGD S T G F I
Sbjct: 4 TRILLLVLAVIIYGTAGFHFIEGESWTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLI 63
Query: 250 SSSTMTLAQFFLYVAEF 266
T A + EF
Sbjct: 64 VLGIGTFAVAVERLLEF 80
>1lnq_A MTHK channels, potassium channel related protein; rossman fold,
helix bundle, membrane protein; 3.30A
{Methanothermobacter thermautotrophicusorganism_taxid}
SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Length = 336
Score = 70.6 bits (173), Expect = 8e-14
Identities = 22/93 (23%), Positives = 47/93 (50%), Gaps = 7/93 (7%)
Query: 65 RPNFKRVLVYLAAYLGGGSLSFYAVNSQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNS 124
+ R+L+ + A + G+ F+ IEG S+Y+ VT+ TVGYGD P++
Sbjct: 17 KVPATRILLLVLAVIIYGTAGFHF----IEGE---SWTVSLYWTFVTIATVGYGDYSPST 69
Query: 125 VVSKLLSCAFVFTGMGLVGMFLSKAADYLVDKQ 157
+ + + G+G + + + ++L++++
Sbjct: 70 PLGMYFTVTLIVLGIGTFAVAVERLLEFLINRE 102
Score = 69.8 bits (171), Expect = 2e-13
Identities = 34/117 (29%), Positives = 52/117 (44%)
Query: 171 VGPTDILKEIETNKVRYKCIIMLVLELVLILVGTIFLVVVEKMSFVDAFYCVCSTITTLG 230
V +I+++ ++ +L+L L +I+ GT +E S+ + Y TI T+G
Sbjct: 2 VLVIEIIRKHLPRVLKVPATRILLLVLAVIIYGTAGFHFIEGESWTVSLYWTFVTIATVG 61
Query: 231 YGDKSFSTTGGRAFGVVWISSSTMTLAQFFLYVAEFNTEKRQKALVNWVLTRKMTHV 287
YGD S ST G F V I T A + EF + Q L+ + K HV
Sbjct: 62 YGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLEFLINREQMKLMGLIDVAKSRHV 118
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer,
ION transport, ionic channel, membrane, transmembrane,
transport; NMR {Escherichia coli} PDB: 2kb1_A
Length = 103
Score = 62.1 bits (151), Expect = 2e-12
Identities = 16/74 (21%), Positives = 28/74 (37%)
Query: 71 VLVYLAAYLGGGSLSFYAVNSQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKLL 130
L L S G D+I++ + T TTVGYGD P + + +
Sbjct: 11 AEEELQKVLEEASKKAVEAERGAPGAALISYPDAIWWSVETATTVGYGDRYPVTEEGRKV 70
Query: 131 SCAFVFTGMGLVGM 144
+ + G+ + +
Sbjct: 71 AEQVMKAGIEVFAL 84
Score = 42.8 bits (101), Expect = 1e-05
Identities = 21/98 (21%), Positives = 33/98 (33%), Gaps = 16/98 (16%)
Query: 189 CIIMLVLELVLILVGTIFLVVVEK-------MSFVDAFYCVCSTITTLGYGDKSFSTTGG 241
++ + V E+ +S+ DA + T TT+GYGD+ T G
Sbjct: 8 AQKAEEELQKVLEEASKKAVEAERGAPGAALISYPDAIWWSVETATTVGYGDRYPVTEEG 67
Query: 242 RAF-------GVVWISSSTMTLAQFFLYVAEFNTEKRQ 272
R G+ + T LA F V +
Sbjct: 68 RKVAEQVMKAGIEVFALVTAALATDF--VRREEERRGH 103
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix,
cell membrane, ION transport, ionic channel, membrane,
transmembrane; 3.80A {Streptomyces lividans}
Length = 139
Score = 61.8 bits (150), Expect = 5e-12
Identities = 21/122 (17%), Positives = 43/122 (35%), Gaps = 4/122 (3%)
Query: 69 KRVLVYLAAYLGGG----SLSFYAVNSQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNS 124
R L S G + ++++ + T TTVGYGDL P +
Sbjct: 5 WRAAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVT 64
Query: 125 VVSKLLSCAFVFTGMGLVGMFLSKAADYLVDKQEILLVKALHRYQKVGPTDILKEIETNK 184
+ +L++ + G+ G+ + A + V +++ + +K +
Sbjct: 65 LWGRLVAVVVMVAGITSFGLVTAALATWFVGREQERRGHFVRHSEKAAEEAYTRTTRALH 124
Query: 185 VR 186
R
Sbjct: 125 ER 126
Score = 44.1 bits (104), Expect = 9e-06
Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 8/71 (11%)
Query: 185 VRYKCIIMLVLEL-VLILVGTIFLVVVEK-------MSFVDAFYCVCSTITTLGYGDKSF 236
+ ++ + L +++L G+ V+ E+ +++ A + T TT+GYGD
Sbjct: 3 LHWRAAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYP 62
Query: 237 STTGGRAFGVV 247
T GR VV
Sbjct: 63 VTLWGRLVAVV 73
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+
IONS, cell membrane, transport PROT; 3.80A {Streptomyces
lividans} PDB: 1f6g_A
Length = 166
Score = 60.3 bits (146), Expect = 3e-11
Identities = 21/122 (17%), Positives = 44/122 (36%), Gaps = 4/122 (3%)
Query: 69 KRVLVYLAAYLGGG----SLSFYAVNSQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNS 124
R L S G + ++++ + T TTVGYGDL P +
Sbjct: 32 WRAAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVT 91
Query: 125 VVSKLLSCAFVFTGMGLVGMFLSKAADYLVDKQEILLVKALHRYQKVGPTDILKEIETNK 184
+ +L++ + G+ G+ + A + V +++ + + +K +
Sbjct: 92 LWGRLVAVVVMVAGITSFGLVTAALATWFVGQEQQQQQQFVRHSEKAAEEAYTRTTRALH 151
Query: 185 VR 186
R
Sbjct: 152 ER 153
Score = 43.0 bits (101), Expect = 3e-05
Identities = 23/121 (19%), Positives = 42/121 (34%), Gaps = 14/121 (11%)
Query: 190 IIMLVLELVLILVGTIFLVVVEK-------MSFVDAFYCVCSTITTLGYGDKSFSTTGGR 242
VL ++++L G+ V+ E+ +++ A + T TT+GYGD T GR
Sbjct: 36 GAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGR 95
Query: 243 AF-------GVVWISSSTMTLAQFFLYVAEFNTEKRQKALVNWVLTRKMTHVDLEAADID 295
G+ T LA +F+ + ++ + D
Sbjct: 96 LVAVVVMVAGITSFGLVTAALATWFVGQEQQQQQQFVRHSEKAAEEAYTRTTRALHERFD 155
Query: 296 E 296
Sbjct: 156 R 156
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA,
structure, membrane protein, metal transport; HET: PCA;
NMR {Streptomyces lividans} SCOP: f.14.1.1
Length = 155
Score = 59.5 bits (144), Expect = 5e-11
Identities = 20/106 (18%), Positives = 40/106 (37%), Gaps = 4/106 (3%)
Query: 69 KRVLVYLAAYLGGG----SLSFYAVNSQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNS 124
R L S G D++++ + T TTVGYGDL P +
Sbjct: 49 WRAAGAATVLLVIVLLAGSYLAVLAERGAPGAALISYPDALWWSVETATTVGYGDLYPVT 108
Query: 125 VVSKLLSCAFVFTGMGLVGMFLSKAADYLVDKQEILLVKALHRYQK 170
+ + ++ + G+ G+ + A + V +++ + +K
Sbjct: 109 LWGRCVAVVVMVAGITSYGLVFAAVATWFVGREQERRGHFVRHSEK 154
Score = 42.5 bits (100), Expect = 4e-05
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 7/75 (9%)
Query: 190 IIMLVLELVLILVGTIFLVVVEK-------MSFVDAFYCVCSTITTLGYGDKSFSTTGGR 242
VL ++++L G+ V+ E+ +S+ DA + T TT+GYGD T GR
Sbjct: 53 GAATVLLVIVLLAGSYLAVLAERGAPGAALISYPDALWWSVETATTVGYGDLYPVTLWGR 112
Query: 243 AFGVVWISSSTMTLA 257
VV + + +
Sbjct: 113 CVAVVVMVAGITSYG 127
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid
semi-synthetic, membrane protein; HET: 1EM; 1.72A
{Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C*
1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C*
2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C*
3ifx_A* 1j95_A 2jk5_C* ...
Length = 122
Score = 57.8 bits (140), Expect = 8e-11
Identities = 18/93 (19%), Positives = 36/93 (38%), Gaps = 4/93 (4%)
Query: 70 RVLVYLAAYLGGG----SLSFYAVNSQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNSV 125
R L S G + ++++ T TTV YGDL P ++
Sbjct: 27 RAAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWACETATTVAYGDLYPVTL 86
Query: 126 VSKLLSCAFVFTGMGLVGMFLSKAADYLVDKQE 158
+L++ + G+ G+ + A + V +++
Sbjct: 87 WGRLVAVVVMVAGITSFGLVTAALATWFVGREQ 119
Score = 42.8 bits (101), Expect = 2e-05
Identities = 20/90 (22%), Positives = 39/90 (43%), Gaps = 8/90 (8%)
Query: 176 ILKEIETNKVRYKCIIMLVLELVL-ILVGTIFLVVVEK-------MSFVDAFYCVCSTIT 227
+L + + ++ + LV+ +L G+ V+ E+ +++ A + C T T
Sbjct: 15 LLLGRHGSALHWRAAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWACETAT 74
Query: 228 TLGYGDKSFSTTGGRAFGVVWISSSTMTLA 257
T+ YGD T GR VV + + +
Sbjct: 75 TVAYGDLYPVTLWGRLVAVVVMVAGITSFG 104
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM
protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB:
2a0l_A
Length = 223
Score = 59.5 bits (145), Expect = 1e-10
Identities = 20/93 (21%), Positives = 41/93 (44%), Gaps = 5/93 (5%)
Query: 57 SESLFGKPRPNFKRVLVYLAAYLGGGSLSFYAVN-SQIEGLKTNE----ILDSIYFCIVT 111
++ Y ++ + A +E N + D++++ +VT
Sbjct: 117 GSKFLSAIADAADKIRFYHLFGAVMLTVLYGAFAIYIVEYPDPNSSIKSVFDALWWAVVT 176
Query: 112 MTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGM 144
TTVGYGD+VP + + K++ A + TG+ + +
Sbjct: 177 ATTVGYGDVVPATPIGKVIGIAVMLTGISALTL 209
Score = 43.4 bits (103), Expect = 4e-05
Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 7/65 (10%)
Query: 190 IIMLVLELVLILVGTIFLVVVEK-------MSFVDAFYCVCSTITTLGYGDKSFSTTGGR 242
+ ++ +L G + +VE S DA + T TT+GYGD +T G+
Sbjct: 134 YHLFGAVMLTVLYGAFAIYIVEYPDPNSSIKSVFDALWWAVVTATTVGYGDVVPATPIGK 193
Query: 243 AFGVV 247
G+
Sbjct: 194 VIGIA 198
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor,
voltage dependent, ION CH shaker, membrane protein,
eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB:
3lnm_B* 3lut_B* 2a79_B*
Length = 514
Score = 59.3 bits (143), Expect = 7e-10
Identities = 15/44 (34%), Positives = 28/44 (63%)
Query: 101 ILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGM 144
I D+ ++ +V+MTTVGYGD+VP ++ K++ G+ + +
Sbjct: 376 IPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIAL 419
Score = 41.6 bits (97), Expect = 3e-04
Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 8/75 (10%)
Query: 190 IIMLVLELVLILVGTIFLVVVEKM-------SFVDAFYCVCSTITTLGYGDKSFSTTGGR 242
+++ L + +IL + + E S DAF+ ++TT+GYGD +T GG+
Sbjct: 345 LLIFFLFIGVILFSSA-VYFAEADERDSQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGK 403
Query: 243 AFGVVWISSSTMTLA 257
G + + +T+A
Sbjct: 404 IVGSLCAIAGVLTIA 418
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION
channel, inwardly rectifying channel, metal transport;
2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16
f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A*
2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A*
2x6a_A*
Length = 301
Score = 57.0 bits (137), Expect = 2e-09
Identities = 19/77 (24%), Positives = 31/77 (40%), Gaps = 1/77 (1%)
Query: 71 VLVYLAAYLGGGSLSFYAVNSQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKLL 130
+YL + A IE + D+ +F + TM T+GYG L+P ++ L
Sbjct: 54 TGLYLVTNALFALA-YLACGDVIENARPGSFTDAFFFSVQTMATIGYGKLIPIGPLANTL 112
Query: 131 SCAFVFTGMGLVGMFLS 147
GM + + S
Sbjct: 113 VTLEALCGMLGLAVAAS 129
Score = 44.3 bits (104), Expect = 3e-05
Identities = 18/96 (18%), Positives = 29/96 (30%), Gaps = 8/96 (8%)
Query: 186 RYKCIIMLVLELVLILVGTIFLVVVEKM-------SFVDAFYCVCSTITTLGYGDKSFST 238
++ L LV + + + + SF DAF+ T+ T+GYG
Sbjct: 47 PVFITLITGLYLVTNALFALAYLACGDVIENARPGSFTDAFFFSVQTMATIGYGKLIPIG 106
Query: 239 TGGRAFGVVWISSSTMTLA-QFFLYVAEFNTEKRQK 273
+ + LA L A F
Sbjct: 107 PLANTLVTLEALCGMLGLAVAASLIYARFTRPTAGV 142
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane
helices, ION conduction, immunoglobulin fold, assembly;
3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16
f.14.1.1 PDB: 2wll_B* 2wll_A*
Length = 333
Score = 56.3 bits (135), Expect = 4e-09
Identities = 29/152 (19%), Positives = 53/152 (34%), Gaps = 7/152 (4%)
Query: 7 NQPLLSGFVDSTPQTNNKDAPKRRRLRRCRSAPQTDVAALDINEKDSTHLSESLFGKPRP 66
N S + A K R R + +V A + L P
Sbjct: 2 NVDPFSPHSSDSFAQAASPARKPPRGGRRIWSGTREVIAYGMPASVWRDLYYWALKVSWP 61
Query: 67 NFKRVL--VYLAAYLGGGSLSFYAVNSQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNS 124
F L +++ L + ++ I + + +F + T+ TVGYGD+ P +
Sbjct: 62 VFFASLAALFVVNNTLFALL-YQLGDAPIANQSPPGFVGAFFFSVETLATVGYGDMHPQT 120
Query: 125 VVSKLLSCAFVFTGMGL----VGMFLSKAADY 152
V + ++ +F GM G+ ++ A
Sbjct: 121 VYAHAIATLEIFVGMSGIALSTGLVFARFARP 152
Score = 42.5 bits (99), Expect = 1e-04
Identities = 20/107 (18%), Positives = 34/107 (31%), Gaps = 8/107 (7%)
Query: 175 DILKEIETNKVRYKCIIMLVLELVLILVGTIFLVVVEK-------MSFVDAFYCVCSTIT 227
D+ + L +V + + + + FV AF+ T+
Sbjct: 50 DLYYWALKVSWPVFFASLAALFVVNNTLFALLYQLGDAPIANQSPPGFVGAFFFSVETLA 109
Query: 228 TLGYGDKSFSTTGGRAFGVVWISSSTMTLAQFF-LYVAEFNTEKRQK 273
T+GYGD T A + I +A L A F + +
Sbjct: 110 TVGYGDMHPQTVYAHAIATLEIFVGMSGIALSTGLVFARFARPRAKI 156
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA;
3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Length = 355
Score = 56.4 bits (136), Expect = 4e-09
Identities = 15/44 (34%), Positives = 31/44 (70%)
Query: 101 ILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGM 144
I ++++ +VT++T GYGD +P S ++L+ A + +G+G+ G+
Sbjct: 162 IPQAMWWAVVTLSTTGYGDTIPQSFAGRVLAGAVMMSGIGIFGL 205
Score = 38.3 bits (89), Expect = 0.002
Identities = 25/121 (20%), Positives = 41/121 (33%), Gaps = 10/121 (8%)
Query: 186 RYKCIIMLVLELVLILVGTIFLVVVEK-------MSFVDAFYCVCSTITTLGYGDKSFST 238
I + L V++ + V+E+ S A + T++T GYGD +
Sbjct: 126 ARNLIGVTTLFGVVLFAVALAAYVIERDIQPEKFGSIPQAMWWAVVTLSTTGYGDTIPQS 185
Query: 239 TGGRAFGVVWISSSTMTLAQ-FFLYVAEFNTE-KRQKALVNWVLTRKMTHV-DLEAADID 295
GR + S + F E +R + NW L + L A +
Sbjct: 186 FAGRVLAGAVMMSGIGIFGLWAGILATGFYQEVRRGDFVRNWQLVAAVPLFQKLGPAVLV 245
Query: 296 E 296
E
Sbjct: 246 E 246
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward
rectifier, potassium channel selectivity filter, metal
transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Length = 321
Score = 52.4 bits (125), Expect = 8e-08
Identities = 16/76 (21%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Query: 71 VLVYLAAYLGGGSLSFYAVNSQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKLL 130
+++L +L + ++ I + +F + T+ TVGYGD+ P +V + +
Sbjct: 50 AVLFLLLNTAFATL-YMLGSAPIANQFPAGFGGAFFFSVETLATVGYGDMHPQTVYAHWI 108
Query: 131 SCAFVFTGMGLVGMFL 146
+ +F GM + +
Sbjct: 109 ATLEIFVGMSSIALAT 124
Score = 43.2 bits (101), Expect = 6e-05
Identities = 21/108 (19%), Positives = 42/108 (38%), Gaps = 8/108 (7%)
Query: 174 TDILKEIETNKVRYKCIIMLVLELVLILV-GTIFLVVVE------KMSFVDAFYCVCSTI 226
+D+ + K R+ + + VL L+L T++++ F AF+ T+
Sbjct: 31 SDLFTTLVDLKWRWFFVSLAVLFLLLNTAFATLYMLGSAPIANQFPAGFGGAFFFSVETL 90
Query: 227 TTLGYGDKSFSTTGGRAFGVVWISSSTMTLAQFF-LYVAEFNTEKRQK 273
T+GYGD T + I ++A + + K++
Sbjct: 91 ATVGYGDMHPQTVYAHWIATLEIFVGMSSIALATGCAFIKMSQPKKRA 138
>3sya_A G protein-activated inward rectifier potassium CH; ION channel,
potassium channel, inward rectification, sodium PIP2
binding, G protein binding; HET: PIO; 2.98A {Mus
musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*
Length = 340
Score = 42.0 bits (98), Expect = 1e-04
Identities = 16/79 (20%), Positives = 27/79 (34%), Gaps = 2/79 (2%)
Query: 71 VLVYLAAYLGGGSLSFYAVNSQIEGLKTNEILDSIYFCIVTMTTVGYGDLVP--NSVVSK 128
++ +L AY+ G + N + + F I T TT+GYG V
Sbjct: 62 MIWWLIAYIRGDMDHIEDPSWTPCVTNLNGFVSAFLFSIETETTIGYGYRVITDKCPEGI 121
Query: 129 LLSCAFVFTGMGLVGMFLS 147
+L G + +
Sbjct: 122 ILLLIQSVLGSIVNAFMVG 140
Score = 37.8 bits (87), Expect = 0.004
Identities = 18/94 (19%), Positives = 34/94 (36%)
Query: 187 YKCIIMLVLELVLILVGTIFLVVVEKMSFVDAFYCVCSTITTLGYGDKSFSTTGGRAFGV 246
+ I + ++ I + V FV AF T TT+GYG + + +
Sbjct: 64 WWLIAYIRGDMDHIEDPSWTPCVTNLNGFVSAFLFSIETETTIGYGYRVITDKCPEGIIL 123
Query: 247 VWISSSTMTLAQFFLYVAEFNTEKRQKALVNWVL 280
+ I S ++ F+ F + K ++
Sbjct: 124 LLIQSVLGSIVNAFMVGCMFVKISQPKKRAETLV 157
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 42.1 bits (98), Expect = 2e-04
Identities = 45/362 (12%), Positives = 107/362 (29%), Gaps = 97/362 (26%)
Query: 1 MASNGANQPLLSGFVDSTPQTNNKDAPKRRRLRRCRSAPQTDVAALDI--NEKDSTHLSE 58
+ N ++ S + + + RRL + + L + N +++ +
Sbjct: 209 IDPNWTSRSDHS---SNIKLRIHSIQAELRRLLKSKPYEN----CLLVLLNVQNAKAWN- 260
Query: 59 SLFGKPRPNFK-RVLV-----YLAAYLGGGSLSFYAVNSQIEGLKTNEILDSIYFCIVTM 112
F N ++L+ + +L + + +++ L +E+ + +
Sbjct: 261 -AF-----NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL--- 311
Query: 113 TTVGYGDLVPNSV--VSKLLSCAFVFTGMGLVGMFLSKAAD-------YLVDKQEILLVK 163
DL P V + + ++ + DK ++
Sbjct: 312 -DCRPQDL-PREVLTTNPRR--------LSIIAESIRDGLATWDNWKHVNCDKLTTIIES 361
Query: 164 ALHRYQKVGPTDILKEIETNKVRYKCIIMLVL--ELVLILVGTIFLV-----VVEKMSFV 216
+L ++L+ E K + L + I + L+ + M V
Sbjct: 362 SL---------NVLEPAEYRK-MFD---RLSVFPPSAHIPTILLSLIWFDVIKSDVMVVV 408
Query: 217 DAFYCVCSTITTLGYGDKSFSTTGGRAFGVV--WISSSTMTLAQFFLYVAEFNTEKRQ-- 272
+ + S +V ST+++ +L + +
Sbjct: 409 NKLH------------KYS----------LVEKQPKESTISIPSIYLELKVKLENEYALH 446
Query: 273 KALVN-WVLTRKMTHVDLEAADIDEDGVVSAAEFIIYKLKEMGKISQEDIALVMEEFQDL 331
+++V+ + + + DL D I + LK + E + L F D
Sbjct: 447 RSIVDHYNIPKTFDSDDL--IPPYLDQYF--YSHIGHHLKNIEHP--ERMTLFRMVFLDF 500
Query: 332 DF 333
F
Sbjct: 501 RF 502
Score = 38.7 bits (89), Expect = 0.003
Identities = 51/383 (13%), Positives = 117/383 (30%), Gaps = 115/383 (30%)
Query: 15 VDSTPQTNNKDAPKRRRLRRCRSAPQTDVAAL--DINEKDSTHLSESLFGKPR-PNFKRV 71
+D + + + R S + V ++ + L + + R P+
Sbjct: 51 IDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTR 110
Query: 72 LVYLAAY--LGGGSLSF--YAVN--SQIEGLKTN--EILDSIYFCIVTMTTVGYGD--LV 121
+ Y+ L + F Y V+ L+ E+ + I + G G +
Sbjct: 111 M-YIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVL--GSGKTWVA 167
Query: 122 PNSVVSKLLSCAFVFTGMGLVGMF-LS----KAADYLVDKQEILLVKALHRYQKV--GPT 174
+ +S + C F +F L+ + + +++ + LL + + +
Sbjct: 168 LDVCLSYKVQCKMDF------KIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSS 221
Query: 175 DILKEIETNKVRYKCIIML-VLELVLILVGTIFLVV--VEKMSFVDAFYCVCST-ITTLG 230
+I I + + + ++ E L LV+ V+ +AF C +TT
Sbjct: 222 NIKLRIHSIQAELRRLLKSKPYENCL-------LVLLNVQNAKAWNAFNLSCKILLTT-- 272
Query: 231 YGDKSFSTTGGRAFGVVWISSSTMTLAQFFLYVAEFNTEKRQKALVNWVLTRKMTHVDLE 290
R K + +++ TH+ L+
Sbjct: 273 ----------------------------------------RFKQVTDFLSAATTTHISLD 292
Query: 291 AADIDEDGVVSAAE----FIIY------KL-KEMGKISQEDIALVMEEFQD--------- 330
++ E + Y L +E+ + ++++ E +D
Sbjct: 293 ----HHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWK 348
Query: 331 -LDFDQSGT--------LSPSDL 344
++ D+ T L P++
Sbjct: 349 HVNCDKLTTIIESSLNVLEPAEY 371
Score = 34.1 bits (77), Expect = 0.092
Identities = 43/372 (11%), Positives = 95/372 (25%), Gaps = 130/372 (34%)
Query: 41 TDVAALDINEKDSTHLSESLFGKPRPNFKRVLVYLAAYLGGGSLSFYAVNSQIEGLKTNE 100
+ KD + E F + V + + + E
Sbjct: 9 FETGEHQYQYKDILSVFE-------DAFVD------------NFDCKDVQDMPKSILSKE 49
Query: 101 ILDSIYFCIVTMTTVGYGDLVPNSV--VSKLLSCAFVFTGMGLVGMFLSKA--ADY--LV 154
+D I + ++V +L + +V F+ + +Y L+
Sbjct: 50 EIDHII-------------MSKDAVSGTLRLFWT-LLSKQEEMVQKFVEEVLRINYKFLM 95
Query: 155 DKQEILLVKALHRYQKVGPTDILKEIET---------------NKVRYKCIIMLVLELVL 199
+ ++ P+ + + N R + L L L
Sbjct: 96 SP---------IKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPY--LKLRQAL 144
Query: 200 ILVGTIFLVVVEKMSFVDAFYCVCSTITTLGYGDKS---------FSTTGGRAFGVVWIS 250
+ + V+++ + LG G K+ + F + W++
Sbjct: 145 LELRPAKNVLIDGV---------------LGSG-KTWVALDVCLSYKVQCKMDFKIFWLN 188
Query: 251 -------SSTMTLAQFFLYVAEFNTEKRQ------KALVNWV---LTRKMTHVDLEAADI 294
+ + + Q LY + N R K ++ + L R + E +
Sbjct: 189 LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL 248
Query: 295 DEDGV---------------------VSAAEFIIYKLKEMGKISQEDIALVMEEFQDLD- 332
V +F+ IS + ++ + +
Sbjct: 249 VLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFL--SAATTTHISLDHHSMTLTPDEVKSL 306
Query: 333 FDQSGTLSPSDL 344
+ P DL
Sbjct: 307 LLKYLDCRPQDL 318
Score = 32.5 bits (73), Expect = 0.21
Identities = 30/194 (15%), Positives = 60/194 (30%), Gaps = 57/194 (29%)
Query: 10 LLSGFVDSTPQTNNKDAPKRRRLRRCRSAPQTDVAALDINEKDSTHLSESLFGKPRPNFK 69
+ S +++ + N+ A R + + P+T DS L P +
Sbjct: 428 IPSIYLELKVKLENEYA-LHRSIVDHYNIPKT---------FDSDDLI------PPYLDQ 471
Query: 70 RVLVYLAAYLGGGSLSFYAVNSQIEGLKTNEILDSIY----FCIVTMTTVGYGDLVPNSV 125
Y +++G + + IE + + ++ F + S+
Sbjct: 472 ----YFYSHIG------HHL-KNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSI 520
Query: 126 VSKLLSCAFVFTGMGLVGMFLSKAADYLVDKQEIL--LVKALHRYQKVGPTDILKEIETN 183
++ L L Y+ D LV A+ D L +IE N
Sbjct: 521 LNTLQQ--------------LKFYKPYICDNDPKYERLVNAI--------LDFLPKIEEN 558
Query: 184 KVRYK--CIIMLVL 195
+ K ++ + L
Sbjct: 559 LICSKYTDLLRIAL 572
>3e3r_A Calcyphosin, calcyphosine; human calcyphosine, EF-hand,
phosphoprotein, calcium binding; 2.65A {Homo sapiens}
Length = 204
Score = 39.6 bits (93), Expect = 6e-04
Identities = 12/56 (21%), Positives = 19/56 (33%), Gaps = 3/56 (5%)
Query: 289 LEAADIDEDGVVSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDL 344
D + G + EF+ M + + I F LD G ++ DL
Sbjct: 79 CRKWDRNGSGTLDLEEFLRALRPPMSQAREAVI---AAAFAKLDRSGDGVVTVDDL 131
>3mse_B Calcium-dependent protein kinase, putative; CDPKS, malaria,
structural genomics consortium, SGC, transfe; 2.10A
{Plasmodium falciparum}
Length = 180
Score = 38.0 bits (89), Expect = 0.001
Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Query: 289 LEAADIDEDGVVSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDL 344
L+A DI++ G ++ EF+ + I + F +D D+ G +S SD+
Sbjct: 79 LQALDINDRGNITYTEFMAGCYRWK-NIESTFL---KAAFNKIDKDEDGYISKSDI 130
Score = 29.2 bits (66), Expect = 1.3
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 316 ISQEDIALVMEEFQDLDFDQSGTLSPSDL 344
+ I + E F LD + +G+LS ++
Sbjct: 33 VINNHIKYINELFYKLDTNHNGSLSHREI 61
>3li6_A Calcium-binding protein; calcium signaling protein, assemble free
energy, dynamic behaviour, cytoskeleton, metal binding;
2.50A {Entamoeba histolytica}
Length = 66
Score = 35.6 bits (83), Expect = 0.002
Identities = 11/51 (21%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Query: 290 EAADIDEDGVVSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLS 340
+ D++ DG VS E + K+ +++ + L+ + D D +G +
Sbjct: 7 KEIDVNGDGAVSYEEVKAFVSKKRAIKNEQLLQLIFKSI---DADGNGEID 54
>1nya_A Calerythrin; EF-hand, metal binding protein; NMR {Saccharopolyspora
erythraea} SCOP: a.39.1.5
Length = 176
Score = 37.8 bits (88), Expect = 0.002
Identities = 8/61 (13%), Positives = 21/61 (34%), Gaps = 5/61 (8%)
Query: 289 LEAADIDEDGVVSAAEFIIYKLKEMGKISQEDIALVMEE-----FQDLDFDQSGTLSPSD 343
+ A + DG ++ +FI + + + V+ D + G ++ +
Sbjct: 64 AKEAGVGSDGSLTEEQFIRVTENLIFEQGEASFNRVLGPVVKGIVGMCDKNADGQINADE 123
Query: 344 L 344
Sbjct: 124 F 124
>3akb_A Putative calcium binding protein; EF-hand, metal binding protein;
1.50A {Streptomyces coelicolor} PDB: 3aka_A
Length = 166
Score = 37.4 bits (87), Expect = 0.002
Identities = 11/60 (18%), Positives = 20/60 (33%), Gaps = 4/60 (6%)
Query: 289 LEAADIDEDGVVSAAEFIIYKLKEMGKISQEDIALVMEE----FQDLDFDQSGTLSPSDL 344
AD D D ++ EF+ +K + + D D G ++ +D
Sbjct: 61 AGIADRDGDQRITREEFVTGAVKRLRDKPDRFAEMARPFLHAALGVADTDGDGAVTVADT 120
Score = 27.4 bits (61), Expect = 4.6
Identities = 10/67 (14%), Positives = 21/67 (31%), Gaps = 13/67 (19%)
Query: 293 DIDEDGVVSAAEF--------IIYKLKEMGKISQEDIALVMEEFQDL----DFDQSGTLS 340
D D +G + ++F + + Q +Q L D D ++
Sbjct: 14 DQDGNGHIDRSDFSGAAKAMLAEFGVAARSDRGQALYGGAEALWQGLAGIADRDGDQRIT 73
Query: 341 PSDLFLA 347
+ F+
Sbjct: 74 REE-FVT 79
>3khe_A Calmodulin-like domain protein kinase isoform 3; calcium dependent
kinase, structural genomics, structural GE consortium,
SGC, ATP-binding; 1.95A {Toxoplasma gondii}
Length = 191
Score = 37.7 bits (88), Expect = 0.002
Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Query: 289 LEAADIDEDGVVSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDL 344
L++ D D +G + +EF+ + + +S+E + + FQ D D SG ++ +L
Sbjct: 93 LQSVDFDRNGYIEYSEFVTVCMDKQLLLSRERL---LAAFQQFDSDGSGKITNEEL 145
Score = 26.9 bits (60), Expect = 9.1
Identities = 7/29 (24%), Positives = 14/29 (48%)
Query: 316 ISQEDIALVMEEFQDLDFDQSGTLSPSDL 344
+ E+ + + F+ LD + G L +L
Sbjct: 34 TTLEETKELTQIFRQLDNNGDGQLDRKEL 62
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid,
receptor, metal transport; HET: P8P; 2.45A {Gallus
gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*
Length = 343
Score = 38.6 bits (89), Expect = 0.002
Identities = 13/80 (16%), Positives = 26/80 (32%), Gaps = 4/80 (5%)
Query: 72 LVYLAAYLGGGSLSFYAVNSQIEGLKTN--EILDSIYFCIVTMTTVGYG--DLVPNSVVS 127
L++ L G L + + + + F I T TT+GYG + ++
Sbjct: 64 LIFWLIALIHGDLENPGGDDTFKPCVLQVNGFVAAFLFSIETQTTIGYGFRCVTEECPLA 123
Query: 128 KLLSCAFVFTGMGLVGMFLS 147
+ G + +
Sbjct: 124 VFMVVVQSIVGCIIDSFMIG 143
Score = 32.8 bits (74), Expect = 0.14
Identities = 19/72 (26%), Positives = 29/72 (40%)
Query: 209 VVEKMSFVDAFYCVCSTITTLGYGDKSFSTTGGRAFGVVWISSSTMTLAQFFLYVAEFNT 268
V++ FV AF T TT+GYG + + A +V + S + F+ A
Sbjct: 89 VLQVNGFVAAFLFSIETQTTIGYGFRCVTEECPLAVFMVVVQSIVGCIIDSFMIGAIMAK 148
Query: 269 EKRQKALVNWVL 280
R K +L
Sbjct: 149 MARPKKRAQTLL 160
>3pm8_A PFCDPK2, calcium-dependent protein kinase 2; malaria, structural
genomics, structural genomics CONS SGC; 2.00A
{Plasmodium falciparum K1}
Length = 197
Score = 36.8 bits (86), Expect = 0.005
Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
Query: 289 LEAADIDEDGVVSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDL 344
L D + G + +F+ + + + +E + F+ D D +G +S +L
Sbjct: 99 LRDIDSNASGQIHYTDFLAATIDKQTYLKKEVC---LIPFKFFDIDGNGKISVEEL 151
Score = 26.8 bits (60), Expect = 8.6
Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 6/42 (14%)
Query: 309 KLKEMG------KISQEDIALVMEEFQDLDFDQSGTLSPSDL 344
+LK++ + +I + F LD D SGTLS ++
Sbjct: 38 ELKKIALTIIAKHLCDVEINNLRNIFIALDVDNSGTLSSQEI 79
>2sas_A Sarcoplasmic calcium-binding protein; 2.40A {Branchiostoma
lanceolatum} SCOP: a.39.1.5
Length = 185
Score = 36.4 bits (84), Expect = 0.005
Identities = 14/89 (15%), Positives = 27/89 (30%), Gaps = 8/89 (8%)
Query: 253 TMTLAQFFLYVAE-FNTEKRQKALVNWVLTRKMTHVDLEAADIDEDGVVSAAEFIIYKLK 311
++ ++ + T K L W + + D+ DG+V EF Y K
Sbjct: 76 VVSWEEYLAMWEKTIATCKSVADLPAWC--QNRIPFLFKGMDVSGDGIVDLEEFQNY-CK 132
Query: 312 EMGKISQEDIALVMEEFQDLDFDQSGTLS 340
+ D+ + + T
Sbjct: 133 NFQ-LQCADVP---AVYNVITDGGKVTFD 157
Score = 34.1 bits (78), Expect = 0.035
Identities = 13/62 (20%), Positives = 24/62 (38%), Gaps = 6/62 (9%)
Query: 289 LEAADIDEDGVVSAAEFI------IYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPS 342
ADI++D VVS E++ I K + + + F+ +D G +
Sbjct: 66 KGRADINKDDVVSWEEYLAMWEKTIATCKSVADLPAWCQNRIPFLFKGMDVSGDGIVDLE 125
Query: 343 DL 344
+
Sbjct: 126 EF 127
>2ccm_A Calexcitin; EF hand, calcium, signaling protein; 1.8A {Loligo
pealeii}
Length = 191
Score = 36.4 bits (84), Expect = 0.007
Identities = 9/62 (14%), Positives = 22/62 (35%), Gaps = 6/62 (9%)
Query: 289 LEAADIDEDGVVSAAEFIIYKLKEMGKI-SQEDIALVMEE-----FQDLDFDQSGTLSPS 342
+ AD +ED V+ E++ + + + E + + + F D +
Sbjct: 70 RKYADENEDEQVTKEEWLKMWAECVKSVEKGESLPEWLTKYMNFMFDVNDTSGDNIIDKH 129
Query: 343 DL 344
+
Sbjct: 130 EY 131
Score = 35.6 bits (82), Expect = 0.011
Identities = 9/59 (15%), Positives = 17/59 (28%), Gaps = 5/59 (8%)
Query: 282 RKMTHVDLEAADIDEDGVVSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLS 340
K + + D D ++ E+ G I + D F L ++
Sbjct: 108 TKYMNFMFDVNDTSGDNIIDKHEYSTV-YMSYG-IPKSDCD---AAFDTLSDGGKTMVT 161
>1q80_A SCP, sarcoplasmic calcium-binding protein; all-alpha, metal binding
protein; NMR {Neanthes diversicolor} SCOP: a.39.1.5 PDB:
2scp_A
Length = 174
Score = 35.9 bits (83), Expect = 0.008
Identities = 5/56 (8%), Positives = 18/56 (32%), Gaps = 2/56 (3%)
Query: 291 AADIDEDGVVSAAEFIIY--KLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDL 344
+ + FI ++ + + + F+ +D ++ +S +
Sbjct: 61 LTAVAGGKGIDETTFINSMKEMVKNPEAKSVVEGPLPLFFRAVDTNEDNNISRDEY 116
Score = 35.9 bits (83), Expect = 0.009
Identities = 17/88 (19%), Positives = 31/88 (35%), Gaps = 10/88 (11%)
Query: 253 TMTLAQFFLYVAEFNTEKRQKALVNWVLTRKMTHVDLEAADIDEDGVVSAAEFIIYKLKE 312
+ F + E K++V + A D +ED +S E+ I+
Sbjct: 69 GIDETTFINSMKEMVKNPEAKSVV-----EGPLPLFFRAVDTNEDNNISRDEYGIF-FGM 122
Query: 313 MGKISQEDIALVMEEFQDLDFDQSGTLS 340
+G + + F +D + G LS
Sbjct: 123 LG-LDKTMAP---ASFDAIDTNNDGLLS 146
Score = 31.6 bits (72), Expect = 0.23
Identities = 8/63 (12%), Positives = 24/63 (38%), Gaps = 9/63 (14%)
Query: 293 DIDEDGVVSAAEF--IIYKLKEMGKISQEDIALVMEEFQDL------DFDQSGTLSPSDL 344
D D+DG ++ +F + + + ++ E ++M+ + + +
Sbjct: 16 DFDKDGAITRMDFESMAERFAKESEMKAEHAKVLMDSLTGVWDNFLTAVAGGKGIDETT- 74
Query: 345 FLA 347
F+
Sbjct: 75 FIN 77
Score = 26.6 bits (59), Expect = 9.2
Identities = 8/41 (19%), Positives = 15/41 (36%), Gaps = 14/41 (34%)
Query: 304 EFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDL 344
+ + K+K F +DFD+ G ++ D
Sbjct: 2 DLWVQKMKTY--------------FNRIDFDKDGAITRMDF 28
>1jfj_A Ehcabp, calcium-binding protein; EF-hand, helix-loop-helix, metal
binding protein; NMR {Entamoeba histolytica} SCOP:
a.39.1.5 PDB: 1jfk_A 2nxq_A 3px1_A 3qjk_A 2jnx_A 2i18_A
Length = 134
Score = 35.2 bits (82), Expect = 0.008
Identities = 11/56 (19%), Positives = 25/56 (44%)
Query: 289 LEAADIDEDGVVSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDL 344
++ D D +G + EF + G+ +D + ++ +D D G L+ ++
Sbjct: 42 FKSIDADGNGEIDQNEFAKFYGSIQGQDLSDDKIGLKVLYKLMDVDGDGKLTKEEV 97
>3k21_A PFCDPK3, calcium-dependent protein kinase 3; calcium kinase
structural genomics malaria, structural genom
consortium, SGC, ATP-binding; 1.15A {Plasmodium
falciparum} PDB: 3o4y_A
Length = 191
Score = 36.1 bits (84), Expect = 0.009
Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Query: 289 LEAADIDEDGVVSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDL 344
L+ D D G + EFI L ++S++ I F+ D D G ++ ++L
Sbjct: 93 LDQIDSDGSGKIDYTEFIAAALDRK-QLSKKLI---YCAFRVFDVDNDGEITTAEL 144
Score = 28.4 bits (64), Expect = 2.6
Identities = 8/42 (19%), Positives = 17/42 (40%), Gaps = 6/42 (14%)
Query: 309 KLKEMG------KISQEDIALVMEEFQDLDFDQSGTLSPSDL 344
K +++ + + D+ + F LD D G ++ L
Sbjct: 33 KFQKLAMTIIAQQSNDYDVEKLKSTFLVLDEDGKGYITKEQL 74
>2aao_A CDPK, calcium-dependent protein kinase, isoform AK1;
calmodulin-like domain, EF calcium binding protein,
transferase; 2.00A {Arabidopsis thaliana}
Length = 166
Score = 35.2 bits (82), Expect = 0.011
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Query: 289 LEAADIDEDGVVSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDL 344
++AAD+D G + EFI L ++ + F D D SG ++P +L
Sbjct: 69 MQAADVDNSGTIDYKEFIAATLHLNKIEREDHL---FAAFTYFDKDGSGYITPDEL 121
>2hps_A Coelenterazine-binding protein with bound coelent; bioluminescence,
southeast collabora structural genomics, secsg,
structural genomics, PSI; HET: CTZ; 1.72A {Renilla
muelleri} PDB: 2hq8_A
Length = 186
Score = 35.5 bits (82), Expect = 0.013
Identities = 9/60 (15%), Positives = 24/60 (40%), Gaps = 4/60 (6%)
Query: 289 LEAADIDEDGVVSAAEFIIYKLKEMGKISQEDIALVMEE----FQDLDFDQSGTLSPSDL 344
+ + +S E + + K+ E+ A+ + + + +D D+ G +S +
Sbjct: 65 ADQLGLAPGVRISVEEAAVNATDSLLKMKGEEKAMAVIQSLIMYDCIDTDKDGYVSLPEF 124
Score = 30.1 bits (68), Expect = 0.76
Identities = 11/61 (18%), Positives = 23/61 (37%), Gaps = 7/61 (11%)
Query: 293 DIDEDGVVSAAEF--IIYKLKEMGKISQEDIALVMEE----FQDLDFDQSGTLSPSDLFL 346
D+ DG +S ++ I ++ ++ K+S E +E L +S +
Sbjct: 24 DVTGDGFISREDYELIAVRIAKIAKLSAEKAEETRQEFLRVADQLGLAPGVRISVEE-AA 82
Query: 347 A 347
Sbjct: 83 V 83
>2hpk_A Photoprotein berovin; structural genomics, PSI, protein structure
initiative, southeast collaboratory for structural
genomics, secsg; 2.00A {Beroe abyssicola}
Length = 208
Score = 35.6 bits (82), Expect = 0.013
Identities = 18/89 (20%), Positives = 31/89 (34%), Gaps = 6/89 (6%)
Query: 253 TMTLAQFFLYVAEFNTEKRQKALVNW-VLTRKMTHVDLEAADIDEDGVVSAAEFIIYKLK 311
+ + F +R++ L +++ + D D DG V E +K
Sbjct: 97 GLLREDWVEANRVFAEAERERERRGEPSLIALLSNSYYDVLDDDGDGTVDVDELKTM-MK 155
Query: 312 EMGKISQEDIALVMEEFQDLDFDQSGTLS 340
+ QE E+ D D+SG L
Sbjct: 156 AFD-VPQEAAYTFFEK---ADTDKSGKLE 180
Score = 30.9 bits (70), Expect = 0.41
Identities = 9/61 (14%), Positives = 19/61 (31%), Gaps = 7/61 (11%)
Query: 293 DIDEDGVVSAAEF------IIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDLFL 346
D+D DG + E + + + ++ V F + L D ++
Sbjct: 46 DLDSDGKMEMDEVLYWPDRMRQLVNATDEQVEKMRDAVRVFFLHKGVEPVNGLLRED-WV 104
Query: 347 A 347
Sbjct: 105 E 105
Score = 30.6 bits (69), Expect = 0.58
Identities = 8/63 (12%), Positives = 19/63 (30%), Gaps = 8/63 (12%)
Query: 290 EAADIDEDGVVSAAEFI--------IYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSP 341
++ + +++ + +E L + LD D GT+
Sbjct: 88 LHKGVEPVNGLLREDWVEANRVFAEAERERERRGEPSLIALLSNSYYDVLDDDGDGTVDV 147
Query: 342 SDL 344
+L
Sbjct: 148 DEL 150
>3ll8_B Calcineurin subunit B type 1; protein-peptide docking, protein
targeting, AKA beta-augmentation, calmodulin-binding,
membrane, hydrolase; 2.00A {Homo sapiens} PDB: 1mf8_B*
2p6b_B 1aui_B 1m63_B* 1tco_B*
Length = 155
Score = 34.9 bits (81), Expect = 0.015
Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Query: 289 LEAADIDEDGVVSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDLFLA 347
++ D D +G V EFI + K +E + F+ D D+ G +S +LF
Sbjct: 44 IDIFDTDGNGEVDFKEFIEGVSQFSVKGDKEQ--KLRFAFRIYDMDKDGYISNGELFQV 100
>2f33_A Calbindin; EF-hand, Ca2+-binding, metal binding protein; NMR
{Rattus norvegicus} PDB: 2g9b_A
Length = 263
Score = 35.2 bits (81), Expect = 0.023
Identities = 10/61 (16%), Positives = 23/61 (37%), Gaps = 5/61 (8%)
Query: 289 LEAADIDEDGVVSAAEFIIYKLKEMGKISQEDIALVMEE-----FQDLDFDQSGTLSPSD 343
L+ D + DG + E + + + + + F+ D D +G + ++
Sbjct: 153 LKLFDSNNDGKLELTEMARLLPVQENFLLKFQGIKMCGKEFNKAFELYDQDGNGYIDENE 212
Query: 344 L 344
L
Sbjct: 213 L 213
Score = 32.2 bits (73), Expect = 0.20
Identities = 11/65 (16%), Positives = 23/65 (35%), Gaps = 12/65 (18%)
Query: 289 LEAADIDEDGVVSAAEFI---------IYKLKEMGKISQEDIALVMEEFQDLDFDQSGTL 339
++ +DG + E + + S E+ M+ ++ D D SG +
Sbjct: 64 VDQYGQRDDGKIGIVELAHVLPTEENFLLLFRCQQLKSCEEF---MKTWRKYDTDHSGFI 120
Query: 340 SPSDL 344
+L
Sbjct: 121 ETEEL 125
>1s6i_A CDPK, calcium-dependent protein kinase SK5; EF-hand,
helix-loop-helix, calcium-binding, calmodulin
superfamily, transferase, plant protein; NMR {Glycine
max} SCOP: a.39.1.5
Length = 188
Score = 34.1 bits (79), Expect = 0.036
Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 289 LEAADIDEDGVVSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDL 344
++AADID+ G + EFI + +E++ + F D D SG ++ ++
Sbjct: 52 MDAADIDKSGTIDYGEFIAATVHLNKLEREENL---VSAFSYFDKDGSGYITLDEI 104
>3h4s_E KCBP interacting Ca2+-binding protein; kinesin, motor protein,
regulation, complex, calcium, EF- hand, calmodulin,
ATP-binding, microtubule; HET: ADP; 2.40A {Arabidopsis
thaliana}
Length = 135
Score = 33.1 bits (76), Expect = 0.040
Identities = 9/63 (14%), Positives = 26/63 (41%), Gaps = 4/63 (6%)
Query: 283 KMTHVDLEA----ADIDEDGVVSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGT 338
M+ D + D+D DG ++ EF + ++ ++ ++ + + + + +
Sbjct: 73 GMSKEDAQGMVREGDLDGDGALNQTEFCVLMVRLSPEMMEDAETWLEKALTQELCNHNLS 132
Query: 339 LSP 341
P
Sbjct: 133 SMP 135
>3a4u_B Multiple coagulation factor deficiency protein 2; lectin, ergic,
ER, golgi, transport, disulfide bond, endopla reticulum,
ER-golgi transport; 1.84A {Homo sapiens} PDB: 2vrg_A
3lcp_C
Length = 143
Score = 33.0 bits (75), Expect = 0.048
Identities = 7/68 (10%), Positives = 27/68 (39%), Gaps = 9/68 (13%)
Query: 290 EAADIDEDGVVSAAEFI--------IYKLKEMGKISQEDIALVMEE-FQDLDFDQSGTLS 340
+ D D + ++ E ++ +S++++ +++ +D D + G +
Sbjct: 75 KMHDYDGNNLLDGLELSTAITHVHKEEGSEQAPLMSEDELINIIDGVLRDDDKNNDGYID 134
Query: 341 PSDLFLAQ 348
++ +
Sbjct: 135 YAEFAKSL 142
Score = 28.0 bits (62), Expect = 2.4
Identities = 7/18 (38%), Positives = 9/18 (50%)
Query: 289 LEAADIDEDGVVSAAEFI 306
L D + DG + AEF
Sbjct: 122 LRDDDKNNDGYIDYAEFA 139
>1ij5_A Plasmodial specific LAV1-2 protein; fourty kDa calcium binding
protein, CBP40, metal binding protein; 3.00A {Physarum
polycephalum} SCOP: a.39.1.9 PDB: 1ij6_A
Length = 323
Score = 33.6 bits (77), Expect = 0.073
Identities = 14/56 (25%), Positives = 22/56 (39%), Gaps = 9/56 (16%)
Query: 289 LEAADIDEDGVVSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDL 344
AD DE V +E++ + I + DFD+SG LS ++
Sbjct: 229 FRYADEDESDDVGFSEYV----HLGLCLLVLRIL-----YAFADFDKSGQLSKEEV 275
Score = 32.9 bits (75), Expect = 0.15
Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 309 KLKEMGK-ISQEDIALVMEEFQDLDFDQSGTLSPSDL 344
+L+ +S+ED ++ + F SG S DL
Sbjct: 108 RLRPSKPMLSEEDTNILRQLFLSSAVSGSGKFSFQDL 144
Score = 30.9 bits (70), Expect = 0.60
Identities = 9/56 (16%), Positives = 20/56 (35%), Gaps = 9/56 (16%)
Query: 289 LEAADIDEDGVVSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDL 344
+ D G +S + + + +F+ +D + +GTLS +
Sbjct: 164 FVMVENDTKGRMSYITLVAVANDLA-AL--------VADFRKIDTNSNGTLSRKEF 210
Score = 30.2 bits (68), Expect = 1.1
Identities = 7/49 (14%), Positives = 15/49 (30%), Gaps = 5/49 (10%)
Query: 293 DIDEDGVVSAAEFIIYKLKEMG-KISQEDIALVMEEFQDLDFDQSGTLS 340
+ G S + L + I + + + + D G +S
Sbjct: 132 AVSGSGKFSFQDLKQV-LAKYADTIPEGPLKKLFVMV---ENDTKGRMS 176
>2vn6_B Endoglucanase A; cell adhesion, carbohydrate metabolism,
polysaccharide degradation, hydrolase, glycosidase,
cellulose degradation; 1.49A {Clostridium
cellulolyticum} PDB: 2vn5_B
Length = 64
Score = 31.0 bits (71), Expect = 0.075
Identities = 9/36 (25%), Positives = 18/36 (50%)
Query: 283 KMTHVDLEAADIDEDGVVSAAEFIIYKLKEMGKISQ 318
H ++ D++ D V+A + I K +G +S+
Sbjct: 27 AADHAYVKNLDVNLDNEVNAFDLAILKKYLLGMVSK 62
>3sjs_A URE3-BP sequence specific DNA binding protein; EF-hand, structural
genomics, seattle S genomics center for infectious
disease, ssgcid; 1.90A {Entamoeba histolytica} PDB:
3sia_A 3sib_A
Length = 220
Score = 33.2 bits (76), Expect = 0.093
Identities = 14/82 (17%), Positives = 24/82 (29%), Gaps = 19/82 (23%)
Query: 272 QKALVNWVLT------RKMTHVDLEAADIDEDGVVSAAEFIIYKLKEMGKISQEDIALVM 325
+ +M + D D +G +S EF+ +
Sbjct: 74 MMGQFPGGIRLSPQTALRM----MRIFDTDFNGHISFYEFMAM----YKFMEL-----AY 120
Query: 326 EEFQDLDFDQSGTLSPSDLFLA 347
F +SGTL P ++ A
Sbjct: 121 NLFVMNARARSGTLEPHEILPA 142
Score = 28.6 bits (64), Expect = 2.6
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 316 ISQEDIALVMEEFQDLDFDQSGTLSPSDL 344
I + + + F +D D+SGTL ++L
Sbjct: 45 IPLDQYTRIYQWFMGVDRDRSGTLEINEL 73
Score = 28.2 bits (63), Expect = 3.2
Identities = 12/53 (22%), Positives = 20/53 (37%), Gaps = 5/53 (9%)
Query: 290 EAADIDEDGVVSAAEFIIYKLKEMG-KISQEDIALVMEEFQDLDFDQSGTLSP 341
D D G + E + G ++S + +M F D D +G +S
Sbjct: 58 MGVDRDRSGTLEINEL-MMGQFPGGIRLSPQTALRMMRIF---DTDFNGHISF 106
>1daq_A Endoglucanase SS, CELS; cellulose degradation, cellulosome,
calcium-binding, hydrolase; NMR {Clostridium
thermocellum} SCOP: a.139.1.1 PDB: 1dav_A
Length = 71
Score = 30.6 bits (70), Expect = 0.094
Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 275 LVNWVLTRKMTHVDLEAADIDEDGVVSAAEFIIYKLKEMGKISQ 318
L +VL R ++ + AD++EDG V++ + I K + +I
Sbjct: 23 LKRYVL-RSGISINTDNADLNEDGRVNSTDLGILKRYILKEIDT 65
>2kz2_A Calmodulin, CAM; TR2C, metal binding protein; NMR {Gallus gallus}
Length = 94
Score = 31.1 bits (71), Expect = 0.11
Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 13/70 (18%)
Query: 280 LTRKMTHVD----LEAA----DIDEDGVVSAAEFIIYKLKEMG-KISQEDIALVMEEFQD 330
M D + A D D +G +SAAE + + + +G K++ E++ ++ E
Sbjct: 18 FQSLMKDTDSEEEIREAFRVEDKDGNGYISAAE-LRHVMTNLGEKLTDEEVDEMIREA-- 74
Query: 331 LDFDQSGTLS 340
D D G ++
Sbjct: 75 -DIDGDGQVN 83
>1qv0_A Obelin, OBL; photoprotein, bioluminescence, atomic resolution, Ca
binding, EF-hand, luminescent protein; HET: CZH; 1.10A
{Obelia longissima} SCOP: a.39.1.5 PDB: 1qv1_A* 1sl9_A*
1el4_A* 2f8p_A* 1sl7_A 1jf2_A* 1s36_A* 1jf0_A* 3kpx_A*
Length = 195
Score = 32.4 bits (74), Expect = 0.12
Identities = 10/76 (13%), Positives = 25/76 (32%), Gaps = 8/76 (10%)
Query: 280 LTRKMTHVDLEAADIDEDGVVSAAEFIIYKLKEMG----KISQEDIALVMEE----FQDL 331
+ ++ ++ +F+ + K ++ + L+ E F
Sbjct: 63 RHQVCVEAFFRGCGMEYGKEIAFPQFLDGWKQLATSELKKWARNEPTLIREWGDAVFDIF 122
Query: 332 DFDQSGTLSPSDLFLA 347
D D SGT++ +
Sbjct: 123 DKDGSGTITLDEWKAY 138
>2be4_A Hypothetical protein LOC449832; DR.36843, BC083168, calicium
binding, EF-hand superfamily, S genomics, protein
structure initiative, PSI; 2.10A {Danio rerio} PDB:
2q4u_A
Length = 272
Score = 32.7 bits (74), Expect = 0.13
Identities = 13/67 (19%), Positives = 26/67 (38%), Gaps = 14/67 (20%)
Query: 289 LEAADIDEDGVVSAAEF-----------IIYKLKEMGKISQEDIALVMEEFQDLDFDQSG 337
+ A D DG + E ++ +E + + M+ ++ D D SG
Sbjct: 63 MSAYDATFDGRLQIEELANMILPQEENFLLIFRREAPLDNSVEF---MKIWRKYDADSSG 119
Query: 338 TLSPSDL 344
+S ++L
Sbjct: 120 YISAAEL 126
Score = 29.3 bits (65), Expect = 1.6
Identities = 9/65 (13%), Positives = 22/65 (33%), Gaps = 9/65 (13%)
Query: 289 LEAADIDEDGVVSAAEFI---------IYKLKEMGKISQEDIALVMEEFQDLDFDQSGTL 339
++ D ++DG + + + + K E + F D ++G L
Sbjct: 154 MKIFDKNKDGRLDLNDLARILALQENFLLQFKMDASSQVERKRDFEKIFAHYDVSRTGAL 213
Query: 340 SPSDL 344
++
Sbjct: 214 EGPEV 218
>1k9u_A Polcalcin PHL P 7; pollen allergen, calcium-binding, EF-hand,
cross-reactivity; 1.75A {Phleum pratense} SCOP:
a.39.1.10
Length = 78
Score = 30.6 bits (70), Expect = 0.14
Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Query: 293 DIDEDGVVSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLS 340
D + DG +S +E L+ +G S +++ +M E D D G +
Sbjct: 13 DTNGDGKISLSELTDA-LRTLGSTSADEVQRMMAEI---DTDGDGFID 56
>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer, domain-swapping,
EF-hand; 1.75A {Chenopodium album} SCOP: a.39.1.10 PDB:
1h4b_A
Length = 86
Score = 30.7 bits (70), Expect = 0.16
Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Query: 293 DIDEDGVVSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLS 340
D + DG +S++E LK +G ++ +++ +M E +D D G +S
Sbjct: 21 DTNGDGKISSSELGDA-LKTLGSVTPDEVRRMMAE---IDTDGDGFIS 64
>3cs1_A Flagellar calcium-binding protein; myristoylated, palmitoylated,
SEN membrane targeting, EF-hand, cell projection,
cilium; 2.00A {Trypanosoma cruzi}
Length = 219
Score = 32.2 bits (73), Expect = 0.19
Identities = 7/66 (10%), Positives = 21/66 (31%), Gaps = 3/66 (4%)
Query: 279 VLTRKMTHVDLEAADIDEDGVVSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGT 338
+ R + ++ G EF+ ++L ++ F ++D +
Sbjct: 90 ITKRAFDKSRTLGSKLENKGSEDFVEFLEFRLMLCYIYDFFEL---TVMFDEIDASGNML 146
Query: 339 LSPSDL 344
+ +
Sbjct: 147 VDEEEF 152
Score = 29.1 bits (65), Expect = 1.9
Identities = 6/28 (21%), Positives = 14/28 (50%)
Query: 317 SQEDIALVMEEFQDLDFDQSGTLSPSDL 344
+ E +E F+ D +++G L ++
Sbjct: 43 TAEAKQRRIELFKKFDKNETGKLCYDEV 70
>2ccl_B Endo-1,4-beta-xylanase Y; cell adhesion, cohesin/dockerin complex,
cellulosome, cohesi dockerin, scaffolding, cellulose
degradation; 2.03A {Clostridium thermocellum} SCOP:
a.139.1.1 PDB: 1ohz_B
Length = 63
Score = 29.8 bits (68), Expect = 0.19
Identities = 11/43 (25%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 275 LVNWVL-TRKMTHVDLEAADIDEDGVVSAAEFIIYKLKEMGKI 316
L VL +T AD+D++G ++AA+ ++ + I
Sbjct: 21 LKRSVLRAITLTDDAKARADVDKNGSINAADVLLLSRYLLRVI 63
>2r2i_A Guanylyl cyclase-activating protein 1; EF hand, GCAP, guanylate
cyclase activating protein, GCAP1, GCAP-1, calcium,
lipoprotein, myristate; HET: MYR; 2.00A {Gallus gallus}
Length = 198
Score = 31.7 bits (72), Expect = 0.24
Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
Query: 293 DIDEDGVVSAAEFIIYKLKEMGKISQEDIALVMEE-----FQDLDFDQSGTLS 340
D+D +G + E + +K + I++ + A+ EE F +D + G LS
Sbjct: 98 DVDGNGCIDRGELLNI-IKAIRAINRCNEAMTAEEFTNMVFDKIDINGDGELS 149
Score = 27.8 bits (62), Expect = 4.0
Identities = 12/56 (21%), Positives = 23/56 (41%), Gaps = 3/56 (5%)
Query: 290 EAADIDEDGVVSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDLF 345
E D ++DG + E++ L + K + F+ D D +G + +L
Sbjct: 59 ETFDFNKDGYIDFMEYVAA-LSLVLKGKVDQKLRWY--FKLYDVDGNGCIDRGELL 111
>1wlz_A DJBP, CAP-binding protein complex interacting protein 1 isoform A;
EF-hand like, unknown function; 1.60A {Homo sapiens}
SCOP: a.39.1.7
Length = 105
Score = 30.1 bits (68), Expect = 0.28
Identities = 12/63 (19%), Positives = 21/63 (33%), Gaps = 6/63 (9%)
Query: 293 DIDEDGVVSAAEFIIYKLKEMG-KISQEDIALVMEEFQDLDFDQSGTLSPSDLFLAQDSQ 351
D + +S EF ++ E + E + G L D FL++ S
Sbjct: 34 DTMKTNTISREEF-RAICNRRVQILTDEQFDRLWNEM---PVNAKGRLKYPD-FLSRFSS 88
Query: 352 TKS 354
+
Sbjct: 89 ETA 91
Score = 29.8 bits (67), Expect = 0.41
Identities = 9/44 (20%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
Query: 301 SAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDL 344
+A I+ +L + I +EF++ D ++ T+S +
Sbjct: 6 TADRDILARLHKAVTSHYHAI---TQEFENFDTMKTNTISREEF 46
>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain
and 4 calmodulin...; transferase, calcium dependent
protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum}
PDB: 3hzt_A* 3dxn_A 3l19_A*
Length = 494
Score = 31.6 bits (72), Expect = 0.35
Identities = 14/60 (23%), Positives = 23/60 (38%), Gaps = 6/60 (10%)
Query: 293 DIDEDGVVSAAEFIIYKLKEMGKISQEDIALVMEE-----FQDLDFDQSGTLSPSDLFLA 347
D + DG + E I K G+ +E DFD++G + S+ F+
Sbjct: 356 DKNGDGQLDRQELIDGYSKLSGEEVAVFDLPQIESEVDAILGAADFDRNGYIDYSE-FVT 414
Score = 30.8 bits (70), Expect = 0.68
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 316 ISQEDIALVMEEFQDLDFDQSGTLSPSDL 344
SQE+ + + F+ +D + G L +L
Sbjct: 340 TSQEETKELTDIFRHIDKNGDGQLDRQEL 368
Score = 29.7 bits (67), Expect = 1.6
Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 9/59 (15%)
Query: 289 LEAADIDEDGVVSAAEFIIYKLKEMGKISQ---EDIALVMEEFQDLDFDQSGTLSPSDL 344
L AAD D +G + +EF+ + + + FQ D D +G +S +L
Sbjct: 396 LGAADFDRNGYIDYSEFV------TVAMDRKSLLSKDKLESAFQKFDQDGNGKISVDEL 448
>1jba_A GCAP-2, protein (guanylate cyclase activating protein 2); EF-hand,
calcium-binding protein, guanylyl cyclase regulation,
lyase; NMR {Bos taurus} SCOP: a.39.1.5
Length = 204
Score = 31.3 bits (71), Expect = 0.35
Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
Query: 290 EAADIDEDGVVSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDLF 345
A D + D + E++ L + + + E + F+ D D++G + +L
Sbjct: 66 RAFDTNGDNTIDFLEYVAA-LNLVLRGTLEH--KLKWTFKIYDKDRNGCIDRQELL 118
>3sg6_A Gcamp2, myosin light chain kinase, green fluorescent PROT
calmodulin chimera; calcium sensor, fluorescent protein;
HET: CRO; 1.70A {Gallus gallus} PDB: 3evu_A* 3ek4_A*
3ek7_A* 3evv_A* 3ek8_A* 3ekh_A* 3sg2_A* 3sg3_A* 3sg7_A*
3ekj_A* 3sg4_A* 3sg5_A* 3evr_A* 3o78_A* 3o77_A* 1trf_A
Length = 450
Score = 31.8 bits (72), Expect = 0.39
Identities = 18/71 (25%), Positives = 37/71 (52%), Gaps = 13/71 (18%)
Query: 279 VLTRKM----THVDLEAA----DIDEDGVVSAAEFIIYKLKEMG-KISQEDIALVMEEFQ 329
++ RKM + ++ A D D +G +SAAE + + + +G K++ E++ ++ E
Sbjct: 373 MMARKMKDTDSEEEIREAFRVFDKDGNGYISAAE-LRHVMTNLGEKLTDEEVDEMIREA- 430
Query: 330 DLDFDQSGTLS 340
D D G ++
Sbjct: 431 --DIDGDGQVN 439
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.9 bits (72), Expect = 0.40
Identities = 18/104 (17%), Positives = 28/104 (26%), Gaps = 39/104 (37%)
Query: 1 MAS-NGANQPLLSGFVDSTPQTNNKDAPKRRRLRRCRSAPQTDVAALDINEKDSTHLSES 59
M S + Q + +V+ T N P + + S
Sbjct: 338 MLSISNLTQEQVQDYVNKT----NSHLPAGK------------------------QVEIS 369
Query: 60 LFGKPRPNFKRVLVYLAAYLGGGSLSFYAVNSQIEGLKTNEILD 103
L + N V + G S Y +N + K LD
Sbjct: 370 LVNGAK-NL----V-----VSGPPQSLYGLNLTLRKAKAPSGLD 403
Score = 29.6 bits (66), Expect = 2.0
Identities = 19/120 (15%), Positives = 35/120 (29%), Gaps = 35/120 (29%)
Query: 250 SSSTMTLAQFFLYVAEFNTEKRQKALVNWVLTRKMTHVD---LEAADI---------DED 297
++ + +F YV+ E + + VL +T + LE DI + D
Sbjct: 55 TTPAELVGKFLGYVSS-LVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQEND 113
Query: 298 GVVSAAEFII---YKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDLF-LAQDSQTK 353
+ + +I + M K S S LF + +
Sbjct: 114 TTLVKTKELIKNYITARIMAKRP------------------FDKKSNSALFRAVGEGNAQ 155
Score = 28.9 bits (64), Expect = 3.3
Identities = 23/142 (16%), Positives = 43/142 (30%), Gaps = 44/142 (30%)
Query: 74 YLAAY------LGGGSLSFYAVNSQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVS 127
YL + +G L+ Y V +++ G E+ + T LV ++
Sbjct: 230 YLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSY----LKGATGHS-QGLVTAVAIA 284
Query: 128 -------------KLLSCAFVFTG------MGLVGMFLSKAADYLVDKQE-----ILLVK 163
K ++ F F G + S D ++ E +L +
Sbjct: 285 ETDSWESFFVSVRKAITVLF-FIGVRCYEAYPNTSLPPSILEDS-LENNEGVPSPMLSIS 342
Query: 164 ALHRYQKVGPTDILKEIE-TNK 184
L + Q + + TN
Sbjct: 343 NLTQEQ------VQDYVNKTNS 358
>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural
genomics, structural genomic consortium, SGC,
transferase; HET: ANP; 2.10A {Plasmodium berghei}
Length = 504
Score = 31.6 bits (72), Expect = 0.42
Identities = 16/96 (16%), Positives = 37/96 (38%), Gaps = 14/96 (14%)
Query: 265 EFNTEKRQKALVNWVLTRKMTHVDL--------EAADIDEDGVVSAAEFI-----IYKLK 311
+F ++ + K+T ++ + D + DG + E I + K
Sbjct: 329 KFEGSQKLAQAAILFIGSKLTTLEERKELTDIFKKLDKNGDGQLDKKELIEGYNVLRNFK 388
Query: 312 EMGKISQEDIALVMEEFQDLDFDQSGTLSPSDLFLA 347
+ V +++DFD++G + S+ F++
Sbjct: 389 NELGELKNVEEEVDNILKEVDFDKNGYIEYSE-FIS 423
Score = 30.1 bits (68), Expect = 1.2
Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Query: 289 LEAADIDEDGVVSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDL 344
L+ D D++G + +EFI + + + E+ F D D+SG ++ +L
Sbjct: 405 LKEVDFDKNGYIEYSEFISVCM-DKQILFSEERLRRA--FNLFDTDKSGKITKEEL 457
>1wdc_C Scallop myosin; calcium binding protein, muscle protein; 2.00A
{Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Z
1kqm_C* 1kwo_C* 1l2o_C* 1qvi_Z* 1s5g_Z* 1sr6_C 1b7t_Z
3jvt_C 3jtd_C 1kk8_C* 2ec6_C 1dfk_Z 1dfl_Z* 2w4t_Z
2w4v_Z 2w4w_Z 2otg_C* 2os8_C* 3pn7_C ...
Length = 156
Score = 30.6 bits (70), Expect = 0.42
Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 12/72 (16%)
Query: 279 VLTRKM-----THVDLEAA----DIDEDGVVSAAEFIIYKLKEMG-KISQEDIALVMEEF 328
M T D A D + G +S AE + + L +G ++S ED+ +++
Sbjct: 71 AYEGLMDCEQGTFADYMEAFKTFDREGQGFISGAE-LRHVLTALGERLSDEDVDEIIKLT 129
Query: 329 QDLDFDQSGTLS 340
DL D G +
Sbjct: 130 -DLQEDLEGNVK 140
>4fl4_A Glycoside hydrolase family 9; structural genomics,
montreal-kingston bacterial structural initiative, BSGI,
dockerin; 2.80A {Clostridium thermocellum} PDB: 3p0d_A
Length = 88
Score = 29.2 bits (66), Expect = 0.44
Identities = 10/47 (21%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Query: 275 LVNWVL---TRKMTHVDLEAADIDEDGVVSAAEFIIYKLKEMGKISQ 318
L +VL + + + AD++ DG V++++ I + I +
Sbjct: 39 LKRYVLKAVSTLPSSKAEKNADVNRDGRVNSSDVTILSRYLIRVIEK 85
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.3 bits (67), Expect = 0.48
Identities = 5/21 (23%), Positives = 8/21 (38%), Gaps = 8/21 (38%)
Query: 82 GSLSFY--------AVNSQIE 94
SL Y A+ + +E
Sbjct: 27 ASLKLYADDSAPALAIKATME 47
>2ovk_C Myosin catalytic light chain LC-1, mantle muscle, myosin regulatory
light chain LC-2, mantle muscle; rigor-like, squid,
contractIle protein; 2.60A {Todarodes pacificus} PDB:
2ekv_C 2ekw_C 2oy6_C* 3i5f_C* 3i5g_C 3i5h_C 3i5i_C
Length = 159
Score = 30.2 bits (69), Expect = 0.49
Identities = 13/49 (26%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Query: 293 DIDEDGVVSAAEFIIYKLKEMG-KISQEDIALVMEEFQDLDFDQSGTLS 340
D + G++S+AE I LK +G +I+++ + D+ D G +
Sbjct: 95 DREGQGLISSAE-IRNVLKMLGERITEDQCNDIFTFC-DIREDIDGNIK 141
>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein
kinase, transferase, calcium-bindin binding, EF hand,
bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma
gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A*
3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A*
3v5t_A* 3ku2_A* 3hx4_A*
Length = 484
Score = 31.2 bits (71), Expect = 0.50
Identities = 7/29 (24%), Positives = 14/29 (48%)
Query: 316 ISQEDIALVMEEFQDLDFDQSGTLSPSDL 344
SQ++ + F +D + G L ++L
Sbjct: 329 TSQDETKELTAIFHKMDKNGDGQLDRAEL 357
Score = 30.4 bits (69), Expect = 0.99
Identities = 14/59 (23%), Positives = 29/59 (49%), Gaps = 9/59 (15%)
Query: 289 LEAADIDEDGVVSAAEFIIYKLKEMGKISQEDI---ALVMEEFQDLDFDQSGTLSPSDL 344
L+A D D++G + +EF+ + ++ + + F+ D D SG +S ++L
Sbjct: 388 LDAVDFDKNGYIEYSEFV------TVAMDRKTLLSRERLERAFRMFDSDNSGKISSTEL 440
Score = 29.3 bits (66), Expect = 1.9
Identities = 15/63 (23%), Positives = 25/63 (39%), Gaps = 9/63 (14%)
Query: 293 DIDEDGVVSAAEFI--IYKLKEMGKISQEDIALVMEE------FQDLDFDQSGTLSPSDL 344
D + DG + AE I +L M + E +DFD++G + S+
Sbjct: 345 DKNGDGQLDRAELIEGYKELMRMKGQDASMLDASAVEHEVDQVLDAVDFDKNGYIEYSE- 403
Query: 345 FLA 347
F+
Sbjct: 404 FVT 406
>1dgu_A Calcium-saturated CIB; helical, EF-hands, blood clotting; NMR {Homo
sapiens} SCOP: a.39.1.5 PDB: 1dgv_A 1xo5_A 1y1a_A*
Length = 183
Score = 30.5 bits (69), Expect = 0.51
Identities = 11/57 (19%), Positives = 29/57 (50%), Gaps = 6/57 (10%)
Query: 293 DIDEDGVVSAAEFI-----IYKLKEMGKISQEDIALVMEE-FQDLDFDQSGTLSPSD 343
D D+DG ++ + + E ++S ++ +++ ++ D D+ GT++ S+
Sbjct: 108 DFDDDGTLNREDLSRLVNCLTGEGEDTRLSASEMKQLIDNILEESDIDRDGTINLSE 164
>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein
kinase, transferase, calcium-bindin binding, bumped
kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium
parvum} PDB: 3igo_A* 3ncg_A*
Length = 486
Score = 31.2 bits (71), Expect = 0.53
Identities = 14/59 (23%), Positives = 24/59 (40%), Gaps = 9/59 (15%)
Query: 289 LEAADIDEDGVVSAAEFIIYKLKEMGKISQEDI---ALVMEEFQDLDFDQSGTLSPSDL 344
+ D+D G + +EFI I + + + F+ D D SG +S +L
Sbjct: 387 MPLLDMDGSGSIEYSEFI------ASAIDRTILLSRERMERAFKMFDKDGSGKISTKEL 439
Score = 29.3 bits (66), Expect = 2.1
Identities = 7/28 (25%), Positives = 14/28 (50%)
Query: 317 SQEDIALVMEEFQDLDFDQSGTLSPSDL 344
+ ++ + E F+ LD + G L +L
Sbjct: 326 TLDETKQLTEIFRKLDTNNDGMLDRDEL 353
Score = 28.9 bits (65), Expect = 2.5
Identities = 20/103 (19%), Positives = 38/103 (36%), Gaps = 22/103 (21%)
Query: 265 EFNTEKRQKALVNWVLTRKMTHVD--------LEAADIDEDGVVSAAEFIIYKLKEMGKI 316
+F EK+ + K+T +D D + DG++ E + E ++
Sbjct: 305 QFQAEKKLAQAALLYMASKLTTLDETKQLTEIFRKLDTNNDGMLDRDELVRG-YHEFMRL 363
Query: 317 SQEDIALVMEE------------FQDLDFDQSGTLSPSDLFLA 347
D +++ LD D SG++ S+ F+A
Sbjct: 364 KGVDSNSLIQNEGSTIEDQIDSLMPLLDMDGSGSIEYSE-FIA 405
>1top_A Troponin C; contractIle system protein; 1.78A {Gallus gallus} SCOP:
a.39.1.5 PDB: 1ncy_A 1ncz_A 1ncx_A 1ytz_C* 1yv0_C 1tnw_A
1tnx_A 5tnc_A 2w49_0 2w4u_0 4tnc_A 1a2x_A 1tcf_A 1tn4_A
2tn4_A 1aj4_A 1jc2_A 1fi5_A 1sbj_A 1scv_A ...
Length = 162
Score = 30.2 bits (69), Expect = 0.59
Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 9/61 (14%)
Query: 289 LEAADIDEDGVVSAAEFIIYKLKEMGKISQEDIALVMEE-----FQDLDFDQSGTLSPSD 343
+E D D G + EF L M + +ED EE F+ D + G + +
Sbjct: 62 IEEVDEDGSGTIDFEEF----LVMMVRQMKEDAKGKSEEELANCFRIFDKNADGFIDIEE 117
Query: 344 L 344
L
Sbjct: 118 L 118
>2ggz_A Guanylyl cyclase-activating protein 3; EF hand, guanylate cyclase
activating protein, GCAP, GCAP3, GCAP-3, lyase
activator; 3.00A {Homo sapiens}
Length = 211
Score = 30.5 bits (69), Expect = 0.62
Identities = 11/53 (20%), Positives = 21/53 (39%), Gaps = 7/53 (13%)
Query: 293 DIDEDGVVSAAEFI-----IYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLS 340
D D +G + E + + L +S E+ + F +D + G L+
Sbjct: 103 DADGNGSIDKNELLDMFMAVQALNGQQTLSPEEF--INLVFHKIDINNDGELT 153
Score = 29.8 bits (67), Expect = 1.1
Identities = 13/56 (23%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
Query: 290 EAADIDEDGVVSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDLF 345
D ++DG V EFI + + + E + F+ D D +G++ ++L
Sbjct: 64 NTFDTNKDGFVDFLEFIAA-VNLIMQEKMEQ--KLKWYFKLYDADGNGSIDKNELL 116
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding
domain, structural genomics, structural genomics
consortium, SGC; 2.30A {Homo sapiens}
Length = 91
Score = 28.9 bits (65), Expect = 0.63
Identities = 7/34 (20%), Positives = 14/34 (41%)
Query: 311 KEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDL 344
+ E++A + F D ++SG L +
Sbjct: 16 FQGADGDGEELARLRSVFAACDANRSGRLEREEF 49
Score = 27.7 bits (62), Expect = 1.6
Identities = 11/48 (22%), Positives = 19/48 (39%), Gaps = 5/48 (10%)
Query: 293 DIDEDGVVSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLS 340
D + G + EF E+ + D V + LD D+ G ++
Sbjct: 37 DANRSGRLEREEFRAL-CTELR-VRPADAEAVFQR---LDADRDGAIT 79
>2kn2_A Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco MKP1, metal
binding Pro; NMR {Glycine max}
Length = 92
Score = 28.7 bits (65), Expect = 0.69
Identities = 12/46 (26%), Positives = 20/46 (43%), Gaps = 7/46 (15%)
Query: 283 KMTHVDLEA----ADIDEDGVVSAAEFI---IYKLKEMGKISQEDI 321
K+T ++E AD+D DG V+ EF+ + G +
Sbjct: 41 KLTDEEVEQMIKEADLDGDGQVNYEEFVKMMMTVRGGGGGNGWSRL 86
>1exr_A Calmodulin; high resolution, disorder, metal transport; 1.00A
{Paramecium tetraurelia} SCOP: a.39.1.5 PDB: 1n0y_A
1osa_A 1clm_A 1mxe_A 2bbm_A 2bbn_A 4cln_A 4djc_A 2wel_D*
2x51_B 2vas_B* 2bkh_B 3gn4_B 3l9i_C 2ygg_B* 2w73_A
1lvc_D* 1wrz_A 2bki_B 2r28_A ...
Length = 148
Score = 29.4 bits (67), Expect = 0.81
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 8/59 (13%)
Query: 289 LEAADIDEDGVVSAAEFI---IYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDL 344
+ D D +G + EF+ K+KE S+E++ +E F+ D D +G +S ++L
Sbjct: 52 INEVDADGNGTIDFPEFLSLMARKMKEQD--SEEEL---IEAFKVFDRDGNGLISAAEL 105
Score = 26.3 bits (59), Expect = 9.9
Identities = 10/28 (35%), Positives = 17/28 (60%), Gaps = 4/28 (14%)
Query: 283 KMTHVDLEA----ADIDEDGVVSAAEFI 306
K+T +++ ADID DG ++ EF+
Sbjct: 115 KLTDDEVDEMIREADIDGDGHINYEEFV 142
>2f2o_A Calmodulin fused with calmodulin-binding domain of calcineurin;
EF-hands, calcium, metal binding protein; 2.17A {Bos
taurus} PDB: 2f2p_A
Length = 179
Score = 29.8 bits (68), Expect = 0.83
Identities = 13/62 (20%), Positives = 28/62 (45%), Gaps = 9/62 (14%)
Query: 283 KMTHVDLEA----ADIDEDGVVSAAEFI---IYKLKEMGKISQEDIALVMEEFQDLDFDQ 335
K+T +++ ADID DG V+ EF+ K G +++++ + + + +
Sbjct: 116 KLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAKGGGGGAAARKEV--IRNKIRAIGKMA 173
Query: 336 SG 337
Sbjct: 174 RV 175
Score = 29.4 bits (67), Expect = 1.2
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 8/59 (13%)
Query: 289 LEAADIDEDGVVSAAEFI---IYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDL 344
+ D D +G + EF+ K+K+ S+E+I E F+ D D +G +S ++L
Sbjct: 53 INEVDADGNGTIDFPEFLTMMARKMKDTD--SEEEI---REAFRVFDKDGNGYISAAEL 106
>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding,
ME binding protein-toxin complex; 2.20A {Chlamydomonas
reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A
Length = 169
Score = 29.9 bits (68), Expect = 0.88
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 8/59 (13%)
Query: 289 LEAADIDEDGVVSAAEFI---IYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDL 344
+ D D G + EF+ K+ E S+E+I ++ F+ D D SGT++ DL
Sbjct: 70 ISEIDKDGSGTIDFEEFLTMMTAKMGERD--SREEI---LKAFRLFDDDNSGTITIKDL 123
>1dtl_A Cardiac troponin C; helix-turn-helix, structural protein; HET: BEP;
2.15A {Gallus gallus} SCOP: a.39.1.5 PDB: 1j1d_A 1j1e_A
2jt3_A 2jt0_A 1la0_A 2jtz_A* 2jt8_A* 2kfx_T* 1wrk_A*
1wrl_A* 1ap4_A 1lxf_C* 1mxl_C 1spy_A 2krd_C* 2l1r_A*
3rv5_A* 2ctn_A 2kgb_C 2jxl_A ...
Length = 161
Score = 29.4 bits (67), Expect = 0.91
Identities = 15/61 (24%), Positives = 24/61 (39%), Gaps = 9/61 (14%)
Query: 289 LEAADIDEDGVVSAAEFIIYKLKEMGKISQEDIALVMEE-----FQDLDFDQSGTLSPSD 343
++ D D G V EF L M + ++D EE F+ D + G + +
Sbjct: 61 IDEVDEDGSGTVDFDEF----LVMMVRSMKDDSKGKSEEELSDLFRMFDKNADGYIDLEE 116
Query: 344 L 344
L
Sbjct: 117 L 117
>2yik_A Endoglucanase; hydrolase; 2.10A {Clostridium thermocellum}
Length = 611
Score = 30.4 bits (68), Expect = 0.94
Identities = 8/36 (22%), Positives = 17/36 (47%)
Query: 283 KMTHVDLEAADIDEDGVVSAAEFIIYKLKEMGKISQ 318
+ +AAD++ DG +++ + I K + I
Sbjct: 573 DRFNTSEQAADLNRDGKINSTDLTILKRYLLYSIPS 608
>1w7j_B Myosin light chain 1; motor protein, unconventional myosin, myosin
V, chicken, molecular motor, ATPase, ELC, IQ motif,
muscle protein, ATP-binding; HET: ADP; 2A {Homo sapiens}
SCOP: a.39.1.5 PDB: 1w7i_B* 1oe9_B* 3j04_C 1br1_B*
1br4_B* 1i84_T* 3dtp_C 2w4a_C 2w4g_C 2w4h_C
Length = 151
Score = 29.5 bits (67), Expect = 0.96
Identities = 11/41 (26%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 293 DIDEDGVVSAAEFIIYKLKEMG-KISQEDIALVMEEFQDLD 332
D + +G V AE + + L +G K+++E++ V+ +D +
Sbjct: 97 DKEGNGKVMGAE-LRHVLTTLGEKMTEEEVETVLAGHEDSN 136
>4ds7_A Calmodulin, CAM; protein binding, metal binding, structura; 2.15A
{Kluyveromyces lactis} PDB: 1lkj_A 1f54_A 1f55_A
Length = 147
Score = 29.4 bits (67), Expect = 0.99
Identities = 13/59 (22%), Positives = 30/59 (50%), Gaps = 8/59 (13%)
Query: 289 LEAADIDEDGVVSAAEFIIY---KLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDL 344
+ D+D + + +EF+ +LK S++++ +E F+ D + G +S ++L
Sbjct: 53 MNEIDVDGNHAIEFSEFLALMSRQLKCND--SEQEL---LEAFKVFDKNGDGLISAAEL 106
>2l4h_A Calcium and integrin-binding protein 1; metal binding protei; NMR
{Homo sapiens} PDB: 2l4i_A 2lm5_A
Length = 214
Score = 29.8 bits (67), Expect = 0.99
Identities = 12/57 (21%), Positives = 31/57 (54%), Gaps = 6/57 (10%)
Query: 293 DIDEDGVVSAAEF--IIYKL---KEMGKISQEDIALVMEE-FQDLDFDQSGTLSPSD 343
D D+DG ++ + ++ L E ++S ++ +++ ++ D D+ GT++ S+
Sbjct: 139 DFDDDGTLNREDLSRLVNCLTGEGEDTRLSASEMKQLIDNILEESDIDRDGTINLSE 195
>2obh_A Centrin-2; DNA repair complex EF hand superfamily protein-peptide
compl cycle; 1.80A {Homo sapiens} SCOP: a.39.1.5 PDB:
3kf9_A 1m39_A 2a4j_A 2k2i_A 1oqp_A
Length = 143
Score = 29.0 bits (66), Expect = 1.1
Identities = 13/59 (22%), Positives = 30/59 (50%), Gaps = 8/59 (13%)
Query: 289 LEAADIDEDGVVSAAEFI---IYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDL 344
+ D + G ++ +F+ K+ E ++E+I ++ F+ D D++G +S +L
Sbjct: 48 ISEIDKEGTGKMNFGDFLTVMTQKMSEKD--TKEEI---LKAFKLFDDDETGKISFKNL 101
Score = 26.7 bits (60), Expect = 7.1
Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 4/28 (14%)
Query: 283 KMTHVDLEA----ADIDEDGVVSAAEFI 306
+T +L+ AD D DG VS EF+
Sbjct: 111 NLTDEELQEMIDEADRDGDGEVSEQEFL 138
>1snl_A Nucleobindin 1, calnuc; EF-hand, calcium-binding, metal binding
protein; NMR {Homo sapiens} SCOP: a.39.1.7
Length = 103
Score = 28.4 bits (63), Expect = 1.1
Identities = 8/27 (29%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 280 LTRKMTHVDLEAADIDEDGVVSAAEFI 306
R HV ++ D ++D +V+ EF+
Sbjct: 70 RLRMREHV-MKNVDTNQDRLVTLEEFL 95
>1yx7_A Calsensin, LAN3-6 antigen; calcium-binding protein EF-hand,
helix-loop- helix, nervous system, metal binding
protein; NMR {Haemopis marmorata} PDB: 1yx8_A
Length = 83
Score = 28.0 bits (63), Expect = 1.2
Identities = 16/71 (22%), Positives = 28/71 (39%), Gaps = 14/71 (19%)
Query: 280 LTRKMTHVDLEAA----DIDEDGVVSAAEF------IIYKLKEMGKISQEDIALVMEEFQ 329
+ K+ +LEAA D + DG V+A E + +E A +++
Sbjct: 1 MACKVKA-ELEAAFKKLDANGDGYVTALELQTFMVTLDAYKALSKDKVKEASAKLIKMA- 58
Query: 330 DLDFDQSGTLS 340
D + G +S
Sbjct: 59 --DKNSDGKIS 67
>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus
gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F*
1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C*
1o1g_C*
Length = 149
Score = 29.0 bits (66), Expect = 1.3
Identities = 11/41 (26%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Query: 293 DIDEDGVVSAAEFIIYKLKEMG-KISQEDIALVMEEFQDLD 332
D + +G V AE + + L +G K+++E++ +M+ +D +
Sbjct: 95 DKEGNGTVMGAE-LRHVLATLGEKMTEEEVEELMKGQEDSN 134
>2bl0_C Myosin regulatory light chain; muscle protein, slime mould,
EF-hand; 1.75A {Physarum polycephalum}
Length = 142
Score = 28.6 bits (65), Expect = 1.5
Identities = 11/59 (18%), Positives = 26/59 (44%), Gaps = 8/59 (13%)
Query: 289 LEAADIDEDGVVSAAEFI---IYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDL 344
AD +G + EF+ ++K+ S++ + + F+ D + +G + + L
Sbjct: 48 FNEADATGNGKIQFPEFLSMMGRRMKQTT--SEDIL---RQAFRTFDPEGTGYIPKAAL 101
>2jnf_A Troponin C; stretch activated muscle contraction, EF-hand, metal
binding protein; NMR {Lethocerus indicus} PDB: 2k2a_A
Length = 158
Score = 28.7 bits (65), Expect = 1.7
Identities = 11/61 (18%), Positives = 26/61 (42%), Gaps = 8/61 (13%)
Query: 289 LEAADIDEDGVVSAAEFIIYKLKEMGK-----ISQEDIALVMEEFQDLDFDQSGTLSPSD 343
++ D +G + F I + +G+ Q+++ E F+ D + +G +S
Sbjct: 56 IDEFDPFGNGDIDFDSFKIIGARFLGEEVNPEQMQQEL---REAFRLYDKEGNGYISTDV 112
Query: 344 L 344
+
Sbjct: 113 M 113
>3ox6_A Calcium-binding protein 1; EF-hand, calcium-sensor; 2.40A {Homo
sapiens} PDB: 3ox5_A 2lan_A 2lap_A 2k7b_A 2k7c_A 2k7d_A
Length = 153
Score = 28.3 bits (64), Expect = 2.1
Identities = 13/62 (20%), Positives = 29/62 (46%), Gaps = 10/62 (16%)
Query: 289 LEAADIDEDGVVSAAEFIIYKLKEMG-KISQEDIALVMEE-----FQDLDFDQSGTLSPS 342
+ +++ G V +F ++ MG K+ E ++ + F++ D + G +S S
Sbjct: 53 SQQINMNLGGHVDFDDF----VELMGPKLLAETADMIGVKELRDAFREFDTNGDGEISTS 108
Query: 343 DL 344
+L
Sbjct: 109 EL 110
>1uhk_A Aequorin 2, aequorin; EF-hand motif, complex, luminescent protein;
HET: CZN; 1.60A {Aequorea victoria} SCOP: a.39.1.5 PDB:
1ej3_A* 1uhi_A* 1uhj_A* 1uhh_A* 1sl8_A
Length = 191
Score = 28.6 bits (64), Expect = 2.2
Identities = 8/73 (10%), Positives = 16/73 (21%), Gaps = 8/73 (10%)
Query: 280 LTRKMTHVDLEAADIDEDGVVSAAEFI--------IYKLKEMGKISQEDIALVMEEFQDL 331
+ A + +I K F +
Sbjct: 59 RHKDAVEAFFGGAGMKYGVETDWPAYIEGWKKLATDELEKYAKNEPTLIRIWGDALFDIV 118
Query: 332 DFDQSGTLSPSDL 344
D DQ+G ++ +
Sbjct: 119 DKDQNGAITLDEW 131
>2bl0_B Myosin regulatory light chain; muscle protein, slime mould,
EF-hand; 1.75A {Physarum polycephalum}
Length = 145
Score = 28.3 bits (64), Expect = 2.2
Identities = 9/49 (18%), Positives = 22/49 (44%), Gaps = 5/49 (10%)
Query: 293 DIDEDGVVSAAEFIIYKLKEMG-KISQEDIALVMEEFQDLDFDQSGTLS 340
D + +G + AE + L +G ++ ++ +M+E G ++
Sbjct: 86 DKEGNGTIQEAE-LRQLLLNLGDALTSSEVEELMKEV---SVSGDGAIN 130
>3dd4_A KV channel-interacting protein 4; EF-hands protein, ION transport,
ionic channel, membrane, PO potassium channel, potassium
transport, transport; 3.00A {Mus musculus} PDB: 2e6w_A
Length = 229
Score = 28.7 bits (64), Expect = 2.3
Identities = 12/56 (21%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
Query: 290 EAADIDEDGVVSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDLF 345
A D D +G VS +FI L + + + ++ F D ++ G ++ ++
Sbjct: 109 NAFDTDHNGAVSFEDFIKG-LSILLRGTVQEKLNWA--FNLYDINKDGYITKEEML 161
>1m45_A MLC1P, myosin light chain; protein-peptide complex, myosin light
chain, cell cycle protein; 1.65A {Saccharomyces
cerevisiae} SCOP: a.39.1.5 PDB: 1m46_A 1n2d_A 2fcd_A
2fce_A
Length = 148
Score = 28.3 bits (64), Expect = 2.3
Identities = 10/49 (20%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
Query: 293 DIDEDGVVSAAEFIIYKLKEMG-KISQEDIALVMEEFQDLDFDQSGTLS 340
D + G VS + + Y L +G K++ ++ +++ + D +G +
Sbjct: 93 DKESTGKVSVGD-LRYMLTGLGEKLTDAEVDELLKGV---EVDSNGEID 137
>2y3n_B Cellulosomal family-48 processive glycoside hydro; structrual
protein-hydrolase complex, cellulosome; 1.90A
{Bacteroides cellulosolvens}
Length = 71
Score = 26.5 bits (59), Expect = 3.0
Identities = 11/47 (23%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Query: 275 LVNWVLTRKMTHVDLEAADIDEDGVVSAAEFIIYKLKEMGKISQEDI 321
L E AD++ DGV+++ + II + GK ++
Sbjct: 23 LAQSFGKAIGNPGVNEKADLNNDGVINSDDAIILA-QYFGKTKSAEV 68
>2ehb_A Calcineurin B-like protein 4; protein complex, Ca(II) IONS bound to
SOS3 (EF-hands 1 and 4 FISL motif; 2.10A {Arabidopsis
thaliana} PDB: 1v1g_A 1v1f_A
Length = 207
Score = 28.2 bits (63), Expect = 3.0
Identities = 11/56 (19%), Positives = 21/56 (37%), Gaps = 2/56 (3%)
Query: 290 EAADIDEDGVVSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDLF 345
+ D+ +GV+ EF+ + V F+ D Q+G + +L
Sbjct: 81 DVFDVKRNGVIEFGEFVRSLGVFHPSAPVHE--KVKFAFKLYDLRQTGFIEREELK 134
>1gjy_A Sorcin, CP-22, V19; calcium binding, calcium-binding,
phosphorylation; 2.2A {Chinese hamster} SCOP: a.39.1.8
Length = 167
Score = 28.1 bits (63), Expect = 3.1
Identities = 19/85 (22%), Positives = 27/85 (31%), Gaps = 20/85 (23%)
Query: 272 QKALVNWVLTRKMTHVDLEA-------ADIDEDGVVSAAEFII--YKLKEMGKISQEDIA 322
Q+ L + +LE D D G + EF L +
Sbjct: 24 QRCLTQSGIAGGYKPFNLETCRLMVSMLDRDMSGTMGFNEFKELWAVLNGWRQH------ 77
Query: 323 LVMEEFQDLDFDQSGTLSPSDLFLA 347
F D D+SGT+ P +L A
Sbjct: 78 -----FISFDSDRSGTVDPQELQKA 97
>2ct9_A Calcium-binding protein P22; EF-hand, metal binding protein; 2.20A
{Rattus norvegicus} PDB: 2e30_A
Length = 208
Score = 28.2 bits (63), Expect = 3.1
Identities = 11/70 (15%), Positives = 21/70 (30%), Gaps = 13/70 (18%)
Query: 289 LEAADIDEDGVVSAAEFII-------YKLKEMGKISQEDIALVMEE------FQDLDFDQ 335
+ A + + V+ F+ + E K L F+ D D+
Sbjct: 67 INAFFSEGEDQVNFRGFMRTLAHFRPIEDNEKSKDVNGPEPLNSRSNKLHFAFRLYDLDK 126
Query: 336 SGTLSPSDLF 345
+S +L
Sbjct: 127 DDKISRDELL 136
Score = 27.0 bits (60), Expect = 8.6
Identities = 11/35 (31%), Positives = 16/35 (45%)
Query: 310 LKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDL 344
+K+ S I + F LD ++GTLS D
Sbjct: 17 IKKETGFSHSQITRLYSRFTSLDKGENGTLSREDF 51
>1juo_A Sorcin; calcium-binding proteins, penta-EF-hand, PEF, X-RAY, metal
transport; 2.20A {Homo sapiens} SCOP: a.39.1.8 PDB:
2jc2_A
Length = 198
Score = 28.2 bits (63), Expect = 3.2
Identities = 22/103 (21%), Positives = 38/103 (36%), Gaps = 20/103 (19%)
Query: 256 LAQFFLYVA----EFNTEKRQKALVNWVLTRKMTHVDLEA-------ADIDEDGVVSAAE 304
L +F VA + + ++ Q+ L + +LE D D G + E
Sbjct: 35 LYGYFAAVAGQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDMSGTMGFNE 94
Query: 305 FIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDLFLA 347
F + ++ + F D D+SGT+ P +L A
Sbjct: 95 F----KELWAVLNG-----WRQHFISFDTDRSGTVDPQELQKA 128
>1y1x_A Leishmania major homolog of programmed cell death protein; SGPP,
structural genomics, PSI; 1.95A {Leishmania major} SCOP:
a.39.1.8
Length = 191
Score = 28.0 bits (63), Expect = 3.9
Identities = 12/63 (19%), Positives = 20/63 (31%), Gaps = 13/63 (20%)
Query: 282 RKMTHVDLEAADIDEDGVVSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSP 341
K+ L D + G ++ EF I E F+ D G L
Sbjct: 66 EKL----LHMYDKNHSGEITFDEF----KDLHHFILSM-----REGFRKRDSSGDGRLDS 112
Query: 342 SDL 344
+++
Sbjct: 113 NEV 115
>2zfd_A Calcineurin B-like protein 2; calcium binding protein,
protein-protein complex, ATP-bindin kinase,
nucleotide-binding; 1.20A {Arabidopsis thaliana} SCOP:
a.39.1.5 PDB: 1uhn_A
Length = 226
Score = 27.9 bits (62), Expect = 4.0
Identities = 10/56 (17%), Positives = 18/56 (32%), Gaps = 2/56 (3%)
Query: 290 EAADIDEDGVVSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDLF 345
+ D +G++ EF +D FQ D Q G + ++
Sbjct: 92 DLFDTKHNGILGFEEFARALSVFHPNAPIDDKIHFS--FQLYDLKQQGFIERQEVK 145
Score = 27.5 bits (61), Expect = 5.3
Identities = 10/53 (18%), Positives = 23/53 (43%), Gaps = 5/53 (9%)
Query: 293 DIDEDGVVSAAEF---IIYKLKEMGK-ISQEDIALVMEE-FQDLDFDQSGTLS 340
D+ + G + E ++ L E G + I ++++ F++ D G +
Sbjct: 132 DLKQQGFIERQEVKQMVVATLAESGMNLKDTVIEDIIDKTFEEADTKHDGKID 184
>1bjf_A Neurocalcin delta; calcium-binding, myristoylation, neuronal
specific guanylate cyclase activator; 2.40A {Bos taurus}
SCOP: a.39.1.5
Length = 193
Score = 27.9 bits (62), Expect = 4.0
Identities = 18/95 (18%), Positives = 30/95 (31%), Gaps = 12/95 (12%)
Query: 251 SSTMTLAQFFLYVAEFNTEKRQKALVNWVLTRKMTHVDLEAADIDEDGVVSAAEFIIYKL 310
S +++ +F F V D + DG + EFII L
Sbjct: 40 SGHLSMEEFKKIYGNFFPYGDASKFAEHVF---------RTFDANGDGTIDFREFIIA-L 89
Query: 311 KEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDLF 345
+ E F D D +G +S +++
Sbjct: 90 SVTSRGKLEQKLKWA--FSMYDLDGNGYISKAEML 122
>1wy9_A Allograft inflammatory factor 1; EF-hand, calucium binding, metal
binding protein; 2.10A {Mus musculus} PDB: 2g2b_A
Length = 147
Score = 27.6 bits (61), Expect = 4.1
Identities = 4/51 (7%), Positives = 16/51 (31%), Gaps = 4/51 (7%)
Query: 294 IDEDGVVSAAEFIIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDL 344
++ +F+ + + ++ + D + +G + L
Sbjct: 24 LEGIN----KQFLDDPKYSNDEDLPSKLEAFKVKYMEFDLNGNGDIDIMSL 70
>2znd_A Programmed cell death protein 6; penta-EF-hand protein, calcium
binding protein, apoptosis, calcium, endoplasmic
reticulum, membrane, nucleus; 1.70A {Homo sapiens} PDB:
2zn9_A 2zn8_A 1hqv_A 3aak_A 2zne_A 2zrs_A 2zrt_A 3aaj_A
Length = 172
Score = 27.6 bits (62), Expect = 4.3
Identities = 10/57 (17%), Positives = 20/57 (35%), Gaps = 13/57 (22%)
Query: 290 EAADIDEDGVVSAAEFII--YKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDL 344
D + V+ +EF + + + F+ D D SG + ++L
Sbjct: 51 SMFDRENKAGVNFSEFTGVWKYITDWQNV-----------FRTYDRDNSGMIDKNEL 96
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand,
transport protein; 2.00A {Rattus norvegicus} SCOP:
a.39.1.5 PDB: 2nz0_A 2i2r_E
Length = 183
Score = 27.9 bits (62), Expect = 4.4
Identities = 13/57 (22%), Positives = 25/57 (43%), Gaps = 9/57 (15%)
Query: 293 DIDEDGVVSAAEFIIYK---LKEMGKISQEDI------ALVMEEFQDLDFDQSGTLS 340
DI++DG ++ E + MGK + + V FQ +D ++ G ++
Sbjct: 102 DINKDGYINKEEMMDIVKAIYDMMGKYTYPVLKEDTPRQHVDVFFQKMDKNKDGIVT 158
>1rwy_A Parvalbumin alpha; EF-hand, calcium-binding, calcium-binding
protein; HET: PG4; 1.05A {Rattus norvegicus} SCOP:
a.39.1.4 PDB: 1rtp_1* 2jww_A 3f45_A 1s3p_A 1xvj_A 1rjv_A
1rk9_A 1g33_A
Length = 109
Score = 26.5 bits (59), Expect = 5.3
Identities = 7/18 (38%), Positives = 9/18 (50%)
Query: 289 LEAADIDEDGVVSAAEFI 306
+ A D D DG + EF
Sbjct: 86 MAAGDKDGDGKIGVEEFS 103
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle,
cell division, mitosis, MR transport, nuclear pore
complex, nucleus, phosphoprotein; 2.50A {Saccharomyces
cerevisiae} PDB: 2gv5_A 2doq_A 3fwc_A
Length = 161
Score = 27.1 bits (61), Expect = 5.5
Identities = 11/59 (18%), Positives = 24/59 (40%), Gaps = 8/59 (13%)
Query: 289 LEAADIDEDGVVSAAEFI---IYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDL 344
++ D + ++ +F K+ + ++I FQ D D +G +S +L
Sbjct: 65 IDEYDSEGRHLMKYDDFYIVMGEKILKRD--PLDEI---KRAFQLFDDDHTGKISIKNL 118
Score = 26.4 bits (59), Expect = 9.5
Identities = 10/28 (35%), Positives = 15/28 (53%), Gaps = 4/28 (14%)
Query: 283 KMTHVDLEA----ADIDEDGVVSAAEFI 306
+T +L A D+D DG ++ EFI
Sbjct: 128 TLTDEELRAMIEEFDLDGDGEINENEFI 155
>3iyl_W VP1; non-enveloped virus, membrane penetration protein, autocleav
myristol group, icosahedral virus; HET: MYR; 3.30A
{Grass carp reovirus} PDB: 3k1q_A
Length = 1299
Score = 27.9 bits (61), Expect = 6.5
Identities = 11/54 (20%), Positives = 19/54 (35%), Gaps = 1/54 (1%)
Query: 29 RRRLRRCRSAPQTDVAALDINEKDSTHLSESLFG-KPRPNFKRVLVYLAAYLGG 81
RR R R P L + +T + +LF + P V +++
Sbjct: 768 NRRRARLRDVPMLITTTLVHQRRFTTPPTFTLFSSEAVPVTTLVAAGYNSFISE 821
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE;
2.30A {Sulfolobus tokodaii}
Length = 429
Score = 27.5 bits (62), Expect = 6.7
Identities = 9/51 (17%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 285 THVDLEAADIDEDGVVSAAE-FIIYKLKEMGKISQEDIALVMEEFQDLDFD 334
+D+E A D + V+ E + +K + + +E++ ++ E ++
Sbjct: 224 ISMDVEMAFADYNDVMQLLEKILHNIVKTIKEEGKEELKILNYEPPEVKIP 274
>2bec_A Calcineurin B homologous protein 2; calcineurin-homologous protein,
calcium-binding protein, NHE1 regulating protein; 2.70A
{Homo sapiens}
Length = 202
Score = 27.4 bits (61), Expect = 6.8
Identities = 11/71 (15%), Positives = 21/71 (29%), Gaps = 14/71 (19%)
Query: 289 LEAADIDEDGVVSAAEFI----------IYKLKEMGKISQEDIALVMEE----FQDLDFD 334
+E+ D V F+ + E + + FQ D D
Sbjct: 67 IESFFPDGSQRVDFPGFVRVLAHFRPVEDEDTETQDPKKPEPLNSRRNKLHYAFQLYDLD 126
Query: 335 QSGTLSPSDLF 345
+ G +S ++
Sbjct: 127 RDGKISRHEML 137
Score = 27.0 bits (60), Expect = 8.2
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 317 SQEDIALVMEEFQDLDFDQSGTLSPSDL 344
SQ + + F+ LD ++ G LS DL
Sbjct: 24 SQASLLRLHHRFRALDRNKKGYLSRMDL 51
>1k8u_A S100A6, calcyclin, CACY; calcium regulatory protein, calcium free,
signaling protein; HET: MSE; 1.15A {Homo sapiens} SCOP:
a.39.1.2 PDB: 1k96_A 1k9k_A 1k9p_A 1a03_A 1cnp_A 1jwd_A
2cnp_A 2jtt_A
Length = 90
Score = 25.9 bits (57), Expect = 7.3
Identities = 7/30 (23%), Positives = 15/30 (50%)
Query: 311 KEMGKISQEDIALVMEEFQDLDFDQSGTLS 340
KE+ S+ A + +DLD ++ ++
Sbjct: 40 KELTIGSKLQDAEIARLMEDLDRNKDQEVN 69
>1qxp_A MU-like calpain; M-calpain, MU-calpain, catalytic triad, Ca(2+)
requirement, hydrolase chimera; 2.80A {Rattus
norvegicus} SCOP: a.39.1.8 a.39.1.8 b.14.1.1 d.3.1.3
Length = 900
Score = 27.8 bits (61), Expect = 7.6
Identities = 13/57 (22%), Positives = 26/57 (45%), Gaps = 13/57 (22%)
Query: 293 DIDEDGVVSAAEF--IIYKLKEMGKISQEDIALVMEEFQDLDFDQSGTLSPSDLFLA 347
D D +G + EF + +++ I F+ D D+SG++S ++ +A
Sbjct: 587 DRDGNGKLGLVEFNILWNRIRNYLTI-----------FRKFDLDKSGSMSAYEMRMA 632
>1s6j_A CDPK, calcium-dependent protein kinase SK5; EF-hand,
helix-loop-helix, calcium-binding, calmodulin
superfamily, transferase, plant protein; NMR {Glycine
max} SCOP: a.39.1.5
Length = 87
Score = 25.6 bits (57), Expect = 8.2
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 305 FIIYKLKEMG-KISQEDIALVMEEFQDLDFDQSGTLSPSDL 344
I K M ++S+E+I + E F+ +D D SGT++ +L
Sbjct: 5 HIDDDDKHMAERLSEEEIGGLKELFKMIDTDNSGTITFDEL 45
>1clc_A Endoglucanase CELD; EC: 3.2.1.4; cellulase, glycosyl hydrolase;
1.90A {Clostridium thermocellum} SCOP: a.102.1.2
b.1.18.2
Length = 639
Score = 27.5 bits (61), Expect = 8.3
Identities = 7/34 (20%), Positives = 17/34 (50%)
Query: 285 THVDLEAADIDEDGVVSAAEFIIYKLKEMGKISQ 318
+ + AD++ DG V++++ I + I +
Sbjct: 603 SSKAEKNADVNRDGRVNSSDVTILSRYLIRVIEK 636
>1ggw_A Protein (CDC4P); light chain, cytokinesis, cell cycle, EF-hand; NMR
{Schizosaccharomyces pombe} SCOP: a.39.1.5
Length = 140
Score = 26.3 bits (59), Expect = 8.3
Identities = 10/41 (24%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 293 DIDEDGVVSAAEFIIYKLKEMG-KISQEDIALVMEEFQDLD 332
D D G++ E + Y L +G K+S E++ +++ +
Sbjct: 86 DKDATGMIGVGE-LRYVLTSLGEKLSNEEMDELLKGV-PVK 124
>1s1e_A KV channel interacting protein 1; kchip, calcium-binding protein,
EF-finger, transport protein; 2.30A {Homo sapiens} SCOP:
a.39.1.5
Length = 224
Score = 26.9 bits (59), Expect = 9.0
Identities = 13/57 (22%), Positives = 25/57 (43%), Gaps = 9/57 (15%)
Query: 293 DIDEDGVVSAAEF---IIYKLKEMGKISQEDI------ALVMEEFQDLDFDQSGTLS 340
DI++DG ++ E + MGK + + V FQ +D ++ G ++
Sbjct: 135 DINKDGYINKEEMMDIVKAIYDMMGKYTYPVLKEDTPRQHVDVFFQKMDKNKDGIVT 191
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.136 0.386
Gapped
Lambda K H
0.267 0.0796 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,289,617
Number of extensions: 320139
Number of successful extensions: 1043
Number of sequences better than 10.0: 1
Number of HSP's gapped: 980
Number of HSP's successfully gapped: 223
Length of query: 354
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 259
Effective length of database: 4,049,298
Effective search space: 1048768182
Effective search space used: 1048768182
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.0 bits)