BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047957
(211 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2JON|A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9
Length = 101
Score = 89.7 bits (221), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 41/90 (45%), Positives = 60/90 (66%), Gaps = 1/90 (1%)
Query: 32 AQRTWCIANPLTNISALLGNLDFACSH-VDCQLIQQGGSCFYPNTPIHHASFAMNLYFQV 90
A +WC+ P + L GN+++ACS +DC IQ GG+CF PNT HA++ MNLY+Q
Sbjct: 9 AAGSWCVPKPGVSDDQLTGNINYACSQGIDCGPIQPGGACFEPNTVKAHAAYVMNLYYQH 68
Query: 91 MGRHSSHCDFRGSGLISLTDPSYESCSFHS 120
GR+S +CDF + ++ T+PSY +C+F S
Sbjct: 69 AGRNSWNCDFSQTATLTNTNPSYGACNFPS 98
Score = 80.9 bits (198), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 52/81 (64%), Gaps = 1/81 (1%)
Query: 130 SATWCVAKPGSGEYILQQNINYACNY-VDCSPTHDGGSCFNPTTLINHASFAMNLYYQTS 188
+ +WCV KPG + L NINYAC+ +DC P GG+CF P T+ HA++ MNLYYQ +
Sbjct: 10 AGSWCVPKPGVSDDQLTGNINYACSQGIDCGPIQPGGACFEPNTVKAHAAYVMNLYYQHA 69
Query: 189 AKNTASCDFRNSGLVVVNDPS 209
+N+ +CDF + + +PS
Sbjct: 70 GRNSWNCDFSQTATLTNTNPS 90
>pdb|1JNY|A Chain A, Crystal Structure Of Sulfolobus Solfataricus Elongation
Factor 1 Alpha In Complex With Gdp
pdb|1JNY|B Chain B, Crystal Structure Of Sulfolobus Solfataricus Elongation
Factor 1 Alpha In Complex With Gdp
pdb|1SKQ|A Chain A, The Crystal Structure Of Sulfolobus Solfataricus
Elongation Factor 1-Alpha In Complex With Magnesium And
Gdp
pdb|1SKQ|B Chain B, The Crystal Structure Of Sulfolobus Solfataricus
Elongation Factor 1-Alpha In Complex With Magnesium And
Gdp
Length = 435
Score = 31.2 bits (69), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 45/107 (42%), Gaps = 20/107 (18%)
Query: 51 NLDFACSHVDCQLIQQGGSCFYPNTP-------------IHHASFAMNLYFQVMGRHSSH 97
N+ F V+ + I++G +PN P + H + N Y V+ H++
Sbjct: 294 NIGFNVRGVEKKDIKRGDVVGHPNNPPTVADEFTARIIVVWHPTALANGYTPVLHVHTAS 353
Query: 98 CDFRGSGLISLTDP-----SYESCSFHSEGDLA--EAPPSATWCVAK 137
R S L+S DP + ++ F +GD+A + P CV K
Sbjct: 354 VACRVSELVSKLDPRTGQEAEKNPQFLKQGDVAIVKFKPIKPLCVEK 400
>pdb|3CMB|A Chain A, Crystal Structure Of Acetoacetate Decarboxylase
(Yp_001047042.1) From Methanoculleus Marisnigri Jr1 At
1.60 A Resolution
pdb|3CMB|B Chain B, Crystal Structure Of Acetoacetate Decarboxylase
(Yp_001047042.1) From Methanoculleus Marisnigri Jr1 At
1.60 A Resolution
pdb|3CMB|C Chain C, Crystal Structure Of Acetoacetate Decarboxylase
(Yp_001047042.1) From Methanoculleus Marisnigri Jr1 At
1.60 A Resolution
pdb|3CMB|D Chain D, Crystal Structure Of Acetoacetate Decarboxylase
(Yp_001047042.1) From Methanoculleus Marisnigri Jr1 At
1.60 A Resolution
Length = 283
Score = 30.4 bits (67), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 20/35 (57%)
Query: 154 NYVDCSPTHDGGSCFNPTTLINHASFAMNLYYQTS 188
++ P H GG F+P TL+ + A++L ++T
Sbjct: 26 DFTYLXPVHFGGGKFDPETLVTQKATALSLSFETE 60
>pdb|1M11|R Chain R, Structural Model Of Human Decay-accelerating Factor Bound
To Echovirus 7 From Cryo-electron Microscopy
Length = 243
Score = 28.1 bits (61), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 6/74 (8%)
Query: 81 SFAMNLYFQVMGRHSSHCDFRGSGLISLTDPSYESCSFHSEGDLAEAPPSATWCVAKPGS 140
SF+ N +++ G SS C GS + +DP E + APP + +
Sbjct: 153 SFSCNTGYKLFGSTSSFCLISGSS-VQWSDPLPECREIY-----CPAPPQIDNGIIQGER 206
Query: 141 GEYILQQNINYACN 154
Y +Q++ YACN
Sbjct: 207 DHYGYRQSVTYACN 220
>pdb|3IYP|F Chain F, The Interaction Of Decay-Accelerating Factor With
Echovirus 7
Length = 381
Score = 27.7 bits (60), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 6/74 (8%)
Query: 81 SFAMNLYFQVMGRHSSHCDFRGSGLISLTDPSYESCSFHSEGDLAEAPPSATWCVAKPGS 140
SF+ N +++ G SS C GS + +DP E + APP + +
Sbjct: 187 SFSCNTGYKLFGSTSSFCLISGSS-VQWSDPLPECREIY-----CPAPPQIDNGIIQGER 240
Query: 141 GEYILQQNINYACN 154
Y +Q++ YACN
Sbjct: 241 DHYGYRQSVTYACN 254
>pdb|1OJV|A Chain A, Decay Accelerating Factor (Cd55): The Structure Of An
Intact Human Complement Regulator.
pdb|1OJV|B Chain B, Decay Accelerating Factor (Cd55): The Structure Of An
Intact Human Complement Regulator.
pdb|1OJW|A Chain A, Decay Accelerating Factor (Cd55): The Structure Of An
Intact Human Complement Regulator.
pdb|1OJW|B Chain B, Decay Accelerating Factor (Cd55): The Structure Of An
Intact Human Complement Regulator.
pdb|1OJY|A Chain A, Decay Accelerating Factor (Cd55): The Structure Of An
Intact Human Complement Regulator.
pdb|1OJY|B Chain B, Decay Accelerating Factor (Cd55): The Structure Of An
Intact Human Complement Regulator.
pdb|1OJY|C Chain C, Decay Accelerating Factor (Cd55): The Structure Of An
Intact Human Complement Regulator.
pdb|1OJY|D Chain D, Decay Accelerating Factor (Cd55): The Structure Of An
Intact Human Complement Regulator.
pdb|1OK1|A Chain A, Decay Accelerating Factor (cd55): The Structure Of An
Intact Human Complement Regulator.
pdb|1OK1|B Chain B, Decay Accelerating Factor (cd55): The Structure Of An
Intact Human Complement Regulator.
pdb|1OK2|A Chain A, Decay Accelerating Factor (Cd55): The Structure Of An
Intact Human Complement Regulator.
pdb|1OK2|B Chain B, Decay Accelerating Factor (Cd55): The Structure Of An
Intact Human Complement Regulator.
pdb|1OK9|A Chain A, Decay Accelerating Factor (Cd55): The Structure Of An
Intact Human Complement Regulator.
pdb|1OK9|B Chain B, Decay Accelerating Factor (Cd55): The Structure Of An
Intact Human Complement Regulator.
pdb|3J24|B Chain B, Cryoem Reconstruction Of Complement Decay-Accelerating
Factor
Length = 254
Score = 27.7 bits (60), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 6/74 (8%)
Query: 81 SFAMNLYFQVMGRHSSHCDFRGSGLISLTDPSYESCSFHSEGDLAEAPPSATWCVAKPGS 140
SF+ N +++ G SS C GS + +DP E + APP + +
Sbjct: 155 SFSCNTGYKLFGSTSSFCLISGSS-VQWSDPLPECREIY-----CPAPPQIDNGIIQGER 208
Query: 141 GEYILQQNINYACN 154
Y +Q++ YACN
Sbjct: 209 DHYGYRQSVTYACN 222
>pdb|1OK3|A Chain A, Decay Accelerating Factor (cd55): The Structure Of An
Intact Human Complement Regulator.
pdb|1OK3|B Chain B, Decay Accelerating Factor (cd55): The Structure Of An
Intact Human Complement Regulator
Length = 254
Score = 27.7 bits (60), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 6/74 (8%)
Query: 81 SFAMNLYFQVMGRHSSHCDFRGSGLISLTDPSYESCSFHSEGDLAEAPPSATWCVAKPGS 140
SF+ N +++ G SS C GS + +DP E + APP + +
Sbjct: 155 SFSCNTGYKLFGSTSSFCLISGSS-VQWSDPLPECREIY-----CPAPPQIDNGIIQGER 208
Query: 141 GEYILQQNINYACN 154
Y +Q++ YACN
Sbjct: 209 DHYGYRQSVTYACN 222
>pdb|2C8I|E Chain E, Complex Of Echovirus Type 12 With Domains 1, 2, 3 And 4 Of
Its Receptor Decay Accelerating Factor (Cd55) By Cryo
Electron Microscopy At 16 A
Length = 316
Score = 27.7 bits (60), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 6/74 (8%)
Query: 81 SFAMNLYFQVMGRHSSHCDFRGSGLISLTDPSYESCSFHSEGDLAEAPPSATWCVAKPGS 140
SF+ N +++ G SS C GS + +DP E + APP + +
Sbjct: 218 SFSCNTGYKLFGSTSSFCLISGSS-VQWSDPLPECREIY-----CPAPPQIDNGIIQGER 271
Query: 141 GEYILQQNINYACN 154
Y +Q++ YACN
Sbjct: 272 DHYGYRQSVTYACN 285
>pdb|1UPN|E Chain E, Complex Of Echovirus Type 12 With Domains 3 And 4 Of Its
Receptor Decay Accelerating Factor (Cd55) By Cryo
Electron Microscopy At 16 A
Length = 129
Score = 27.7 bits (60), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 6/74 (8%)
Query: 81 SFAMNLYFQVMGRHSSHCDFRGSGLISLTDPSYESCSFHSEGDLAEAPPSATWCVAKPGS 140
SF+ N +++ G SS C GS + +DP E + APP + +
Sbjct: 31 SFSCNTGYKLFGSTSSFCLISGSS-VQWSDPLPECREIY-----CPAPPQIDNGIIQGER 84
Query: 141 GEYILQQNINYACN 154
Y +Q++ YACN
Sbjct: 85 DHYGYRQSVTYACN 98
>pdb|1H2P|P Chain P, Human Cd55 Domains 3 & 4
Length = 125
Score = 27.3 bits (59), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 6/74 (8%)
Query: 81 SFAMNLYFQVMGRHSSHCDFRGSGLISLTDPSYESCSFHSEGDLAEAPPSATWCVAKPGS 140
SF+ N +++ G SS C GS + +DP E + APP + +
Sbjct: 27 SFSCNTGYKLFGSTSSFCLISGSS-VQWSDPLPECREIY-----CPAPPQIDNGIIQGER 80
Query: 141 GEYILQQNINYACN 154
Y +Q++ YACN
Sbjct: 81 DHYGYRQSVTYACN 94
>pdb|1H03|P Chain P, Human Cd55 Domains 3 & 4
pdb|1H03|Q Chain Q, Human Cd55 Domains 3 & 4
pdb|1H2Q|P Chain P, Human Cd55 Domains 3 & 4
pdb|1UOT|P Chain P, Human Cd55 Domains 3 & 4
Length = 125
Score = 27.3 bits (59), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 6/74 (8%)
Query: 81 SFAMNLYFQVMGRHSSHCDFRGSGLISLTDPSYESCSFHSEGDLAEAPPSATWCVAKPGS 140
SF+ N +++ G SS C GS + +DP E + APP + +
Sbjct: 27 SFSCNTGYKLFGSTSSFCLISGSS-VQWSDPLPECREIY-----CPAPPQIDNGIIQGER 80
Query: 141 GEYILQQNINYACN 154
Y +Q++ YACN
Sbjct: 81 DHYGYRQSVTYACN 94
>pdb|1H04|P Chain P, Human Cd55 Domains 3 & 4
Length = 125
Score = 27.3 bits (59), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 6/74 (8%)
Query: 81 SFAMNLYFQVMGRHSSHCDFRGSGLISLTDPSYESCSFHSEGDLAEAPPSATWCVAKPGS 140
SF+ N +++ G SS C GS + +DP E + APP + +
Sbjct: 27 SFSCNTGYKLAGSTSSFCLISGSS-VQWSDPLPECREIY-----CPAPPQIDNGIIQGER 80
Query: 141 GEYILQQNINYACN 154
Y +Q++ YACN
Sbjct: 81 DHYGYRQSVTYACN 94
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.133 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,572,985
Number of Sequences: 62578
Number of extensions: 269186
Number of successful extensions: 868
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 849
Number of HSP's gapped (non-prelim): 25
length of query: 211
length of database: 14,973,337
effective HSP length: 95
effective length of query: 116
effective length of database: 9,028,427
effective search space: 1047297532
effective search space used: 1047297532
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)