Query 047957
Match_columns 211
No_of_seqs 263 out of 1345
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 04:55:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047957.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047957hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00768 X8 Possibly involve 100.0 5.4E-31 1.2E-35 194.5 8.6 80 132-211 1-81 (85)
2 smart00768 X8 Possibly involve 100.0 7.3E-30 1.6E-34 188.4 8.1 84 35-118 1-85 (85)
3 PF07983 X8: X8 domain; Inter 99.9 3.2E-25 6.9E-30 161.2 6.7 71 132-202 1-78 (78)
4 PF07983 X8: X8 domain; Inter 99.9 3.1E-23 6.7E-28 150.8 6.4 71 35-105 1-78 (78)
5 PF00332 Glyco_hydro_17: Glyco 76.7 0.15 3.2E-06 46.0 -4.7 76 25-109 226-308 (310)
6 TIGR02794 tolA_full TolA prote 34.5 37 0.0008 31.2 2.9 13 6-18 6-18 (346)
7 PF09628 YvfG: YvfG protein; 23.5 48 0.001 23.1 1.3 9 179-187 27-35 (68)
8 PLN02931 nucleoside diphosphat 21.8 1.2E+02 0.0027 25.2 3.6 49 9-57 3-55 (177)
9 PRK14756 hypothetical protein; 18.7 1.4E+02 0.0029 17.6 2.3 20 3-22 4-23 (29)
10 PRK02655 psbI photosystem II r 16.9 89 0.0019 19.6 1.3 22 1-22 1-22 (38)
No 1
>smart00768 X8 Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges.
Probab=99.97 E-value=5.4e-31 Score=194.46 Aligned_cols=80 Identities=43% Similarity=0.930 Sum_probs=77.9
Q ss_pred ceeeeCCCCChhHHHHHHHhhcCC-CcCCcCCCCCCCCCCCChhhhHhHHHHHHHHhcCCCCCCCCCCCceEEEccCCCC
Q 047957 132 TWCVAKPGSGEYILQQNINYACNY-VDCSPTHDGGSCFNPTTLINHASFAMNLYYQTSAKNTASCDFRNSGLVVVNDPSK 210 (211)
Q Consensus 132 ~~CV~~~~~~~~~l~~~l~yaCg~-~dC~~I~~~g~c~~~~~~~~~~sya~N~Yy~~~~~~~~aCdF~G~a~~~~~dps~ 210 (211)
+|||+|+++++++||++|||||++ +||++|++||+||+|+++++|||||||+|||++++.+++|||+|.|+++++|||+
T Consensus 1 ~wCv~~~~~~~~~l~~~~~yaCg~~~dC~~I~~~g~c~~~~~~~~~aS~a~N~YYq~~~~~~~aC~F~G~a~~~~~~ps~ 80 (85)
T smart00768 1 LWCVAKPDADEAALQAALDYACGQGADCTAIQPGGSCYSPNTVKAHASYAFNSYYQKQGQSSGACDFGGTATITTTDPST 80 (85)
T ss_pred CccccCCCCCHHHHHHHHHHHhcCCCCccccCCCCcccCCCCHHHHHHHHHHHHHHHcCCCCCcCCCCCceEEEecCCCC
Confidence 599999999999999999999999 9999999999999999999999999999999999999999999999999999996
Q ss_pred C
Q 047957 211 S 211 (211)
Q Consensus 211 ~ 211 (211)
+
T Consensus 81 ~ 81 (85)
T smart00768 81 G 81 (85)
T ss_pred C
Confidence 3
No 2
>smart00768 X8 Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges.
Probab=99.96 E-value=7.3e-30 Score=188.42 Aligned_cols=84 Identities=50% Similarity=0.965 Sum_probs=81.7
Q ss_pred eeeEeCCCCCHHHHHHHHHHhccc-ccccccCCCCCCCCCCCchhhhHHHHHHHHHHhCCCccCccCCCCcceecCCCCC
Q 047957 35 TWCIANPLTNISALLGNLDFACSH-VDCQLIQQGGSCFYPNTPIHHASFAMNLYFQVMGRHSSHCDFRGSGLISLTDPSY 113 (211)
Q Consensus 35 ~wCV~~~~~~~~~l~~~ld~AC~~-~dC~~I~~~Gtc~~p~~~~~~aSyafn~Yyq~~~~~~~~CdF~g~a~v~~~dps~ 113 (211)
.|||+||++++++|+++|+|||++ +||++|++||+||+|+++++|+|||||+|||++++..++|+|+|.|++++.||+.
T Consensus 1 ~wCv~~~~~~~~~l~~~~~yaCg~~~dC~~I~~~g~c~~~~~~~~~aS~a~N~YYq~~~~~~~aC~F~G~a~~~~~~ps~ 80 (85)
T smart00768 1 LWCVAKPDADEAALQAALDYACGQGADCTAIQPGGSCYSPNTVKAHASYAFNSYYQKQGQSSGACDFGGTATITTTDPST 80 (85)
T ss_pred CccccCCCCCHHHHHHHHHHHhcCCCCccccCCCCcccCCCCHHHHHHHHHHHHHHHcCCCCCcCCCCCceEEEecCCCC
Confidence 599999999999999999999999 8999999999999999999999999999999999999999999999999999999
Q ss_pred CCccc
Q 047957 114 ESCSF 118 (211)
Q Consensus 114 ~sC~~ 118 (211)
++|.|
T Consensus 81 ~~C~~ 85 (85)
T smart00768 81 GSCKF 85 (85)
T ss_pred CccCC
Confidence 88875
No 3
>PF07983 X8: X8 domain; InterPro: IPR012946 The X8 domain [] contains 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen [] as well as at the C terminus of family 17 glycosyl hydrolases []. This domain may be involved in carbohydrate binding.; PDB: 2JON_A 2W61_A 2W62_A 2W63_A.
Probab=99.92 E-value=3.2e-25 Score=161.23 Aligned_cols=71 Identities=39% Similarity=0.846 Sum_probs=61.0
Q ss_pred ceeeeCCCCChhHHHHHHHhhcCC--CcCCcCCCCCC-----CCCCCChhhhHhHHHHHHHHhcCCCCCCCCCCCceE
Q 047957 132 TWCVAKPGSGEYILQQNINYACNY--VDCSPTHDGGS-----CFNPTTLINHASFAMNLYYQTSAKNTASCDFRNSGL 202 (211)
Q Consensus 132 ~~CV~~~~~~~~~l~~~l~yaCg~--~dC~~I~~~g~-----c~~~~~~~~~~sya~N~Yy~~~~~~~~aCdF~G~a~ 202 (211)
+|||+++++++++|+++|||||++ +||++|++||+ .|++|+.++|||||||+|||.+++.+++|||+|+||
T Consensus 1 l~Cv~~~~~~~~~l~~~l~~aC~~~~~dC~~I~~~g~~G~YG~~S~C~~~~~lSya~N~YY~~~~~~~~~C~F~G~at 78 (78)
T PF07983_consen 1 LWCVAKPDADDKELQDLLDYACGQGGVDCSPIQPNGTTGVYGAYSMCSPRQHLSYAFNQYYQKQGRNSSACDFSGNAT 78 (78)
T ss_dssp -EEEE-TTS-HHHHHHHHHHHTTT-SSSCCCC-EETTTTEE-TTTTS-CCHHHHHHHHHHHHHHTSSCCG-SS-STEE
T ss_pred CcceeCCCCCHHHHHHHHHHHHcCCCCChhhhCCCCcccccccccCCCHHHHHHHHHHHHHHHcCCCCCcCCCCCCCC
Confidence 699999999999999999999998 99999999998 477777799999999999999999999999999996
No 4
>PF07983 X8: X8 domain; InterPro: IPR012946 The X8 domain [] contains 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen [] as well as at the C terminus of family 17 glycosyl hydrolases []. This domain may be involved in carbohydrate binding.; PDB: 2JON_A 2W61_A 2W62_A 2W63_A.
Probab=99.88 E-value=3.1e-23 Score=150.78 Aligned_cols=71 Identities=42% Similarity=0.840 Sum_probs=62.1
Q ss_pred eeeEeCCCCCHHHHHHHHHHhccc--ccccccCCCCC-----CCCCCCchhhhHHHHHHHHHHhCCCccCccCCCCcc
Q 047957 35 TWCIANPLTNISALLGNLDFACSH--VDCQLIQQGGS-----CFYPNTPIHHASFAMNLYFQVMGRHSSHCDFRGSGL 105 (211)
Q Consensus 35 ~wCV~~~~~~~~~l~~~ld~AC~~--~dC~~I~~~Gt-----c~~p~~~~~~aSyafn~Yyq~~~~~~~~CdF~g~a~ 105 (211)
+|||+||++++++|+++|||||++ +||++|++||+ .|++|.+++|+|||||+|||++++..++|+|+|.|+
T Consensus 1 l~Cv~~~~~~~~~l~~~l~~aC~~~~~dC~~I~~~g~~G~YG~~S~C~~~~~lSya~N~YY~~~~~~~~~C~F~G~at 78 (78)
T PF07983_consen 1 LWCVAKPDADDKELQDLLDYACGQGGVDCSPIQPNGTTGVYGAYSMCSPRQHLSYAFNQYYQKQGRNSSACDFSGNAT 78 (78)
T ss_dssp -EEEE-TTS-HHHHHHHHHHHTTT-SSSCCCC-EETTTTEE-TTTTS-CCHHHHHHHHHHHHHHTSSCCG-SS-STEE
T ss_pred CcceeCCCCCHHHHHHHHHHHHcCCCCChhhhCCCCcccccccccCCCHHHHHHHHHHHHHHHcCCCCCcCCCCCCCC
Confidence 699999999999999999999999 89999999999 899999999999999999999999999999999985
No 5
>PF00332 Glyco_hydro_17: Glycosyl hydrolases family 17; InterPro: IPR000490 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 17 GH17 from CAZY comprises enzymes with several known activities; endo-1,3-beta-glucosidase (3.2.1.39 from EC); lichenase (3.2.1.73 from EC); exo-1,3-glucanase (3.2.1.58 from EC). Currently these enzymes have only been found in plants and in fungi. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1AQ0_B 1GHR_A 1GHS_B 2CYG_A 3UR8_A 3UR7_B 3EM5_C 3F55_D.
Probab=76.69 E-value=0.15 Score=46.01 Aligned_cols=76 Identities=7% Similarity=0.065 Sum_probs=38.4
Q ss_pred CcccccCCCceeeEeCCCCCH--HHHHHHHHHhcccccccccCCCCCCCCCCCchhhhHHHHHHHHHHhC-----CCccC
Q 047957 25 GKLKMASAQRTWCIANPLTNI--SALLGNLDFACSHVDCQLIQQGGSCFYPNTPIHHASFAMNLYFQVMG-----RHSSH 97 (211)
Q Consensus 25 ~~~~~~~~~~~wCV~~~~~~~--~~l~~~ld~AC~~~dC~~I~~~Gtc~~p~~~~~~aSyafn~Yyq~~~-----~~~~~ 97 (211)
+.++++++|++| |+..+ ..++.+..|.-.. ..... .|+|.+|....+ .|.|.+|.|..+ +++|+
T Consensus 226 ~~~~vvv~ETGW----Ps~G~~~a~~~nA~~~~~nl-~~~~~--~gt~~~~~~~~~--~y~F~~FdE~~K~~~~~E~~wG 296 (310)
T PF00332_consen 226 PNVPVVVGETGW----PSAGDPGATPENAQAYNQNL-IKHVL--KGTPLRPGNGID--VYIFEAFDENWKPGPEVERHWG 296 (310)
T ss_dssp TT--EEEEEE-------SSSSTTCSHHHHHHHHHHH-HHHCC--GBBSSSBSS-----EEES-SB--TTSSSSGGGGG--
T ss_pred CCceeEEecccc----ccCCCCCCCcchhHHHHHHH-HHHHh--CCCcccCCCCCe--EEEEEEecCcCCCCCcccceee
Confidence 578899999999 88744 1223333332221 11222 789999987777 899999999986 46788
Q ss_pred ccCCCCcceecC
Q 047957 98 CDFRGSGLISLT 109 (211)
Q Consensus 98 CdF~g~a~v~~~ 109 (211)
.+..+...++..
T Consensus 297 lf~~d~~~ky~~ 308 (310)
T PF00332_consen 297 LFYPDGTPKYDL 308 (310)
T ss_dssp SB-TTSSBSS--
T ss_pred eECCCCCeecCC
Confidence 887776666644
No 6
>TIGR02794 tolA_full TolA protein. TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB.
Probab=34.51 E-value=37 Score=31.18 Aligned_cols=13 Identities=46% Similarity=0.416 Sum_probs=5.7
Q ss_pred chhHHHHHHHHHH
Q 047957 6 LSLRTTMCLLFLF 18 (211)
Q Consensus 6 ~~~~~~~~~~~~~ 18 (211)
|||.+|++||+||
T Consensus 6 lSv~lHvlLi~lL 18 (346)
T TIGR02794 6 LSLLLHILLLGLL 18 (346)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444333
No 7
>PF09628 YvfG: YvfG protein; InterPro: IPR018590 Yvfg is a hypothetical protein of 71 residues expressed in some bacteria. The monomer consists of two parallel alpha helices, and the protein crystallises as a homo-dimer. ; PDB: 2GSV_A 2JS1_B.
Probab=23.54 E-value=48 Score=23.06 Aligned_cols=9 Identities=56% Similarity=1.028 Sum_probs=7.6
Q ss_pred HHHHHHHHh
Q 047957 179 FAMNLYYQT 187 (211)
Q Consensus 179 ya~N~Yy~~ 187 (211)
-|||+||+.
T Consensus 27 ~AmNaYYr~ 35 (68)
T PF09628_consen 27 HAMNAYYRS 35 (68)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 489999985
No 8
>PLN02931 nucleoside diphosphate kinase family protein
Probab=21.76 E-value=1.2e+02 Score=25.15 Aligned_cols=49 Identities=16% Similarity=0.085 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHhhCC---CcccccCCCceeeEeCCCCC-HHHHHHHHHHhcc
Q 047957 9 RTTMCLLFLFISFNSG---GKLKMASAQRTWCIANPLTN-ISALLGNLDFACS 57 (211)
Q Consensus 9 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~wCV~~~~~~-~~~l~~~ld~AC~ 57 (211)
|.||--++||+.++.. ++++....++.-|+.||++= ...+++.++-+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~erTlalIKPdav~~~~~G~Il~~I~~ 55 (177)
T PLN02931 3 RSTLQPLFLLLLASFPIRCSSSGASEEERTLAMIKPDGLSGNYTERIKEVILE 55 (177)
T ss_pred chHHHHHHHHHHcccccccCCCCCCcceeEEEEECchhhhcccHHHHHHHHHH
Confidence 3455445555555553 67777778899999999973 2335666666654
No 9
>PRK14756 hypothetical protein; Provisional
Probab=18.67 E-value=1.4e+02 Score=17.62 Aligned_cols=20 Identities=35% Similarity=0.448 Sum_probs=13.9
Q ss_pred cccchhHHHHHHHHHHHHhh
Q 047957 3 KLPLSLRTTMCLLFLFISFN 22 (211)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~ 22 (211)
.|-.||-+|...+.+...++
T Consensus 4 dLK~SL~tTvvaL~~Iva~~ 23 (29)
T PRK14756 4 DLKFSLVTTIIVLGLIVAVG 23 (29)
T ss_pred chhhhHHHHHHHHHHHHHHH
Confidence 46679999988766555554
No 10
>PRK02655 psbI photosystem II reaction center I protein I; Provisional
Probab=16.87 E-value=89 Score=19.57 Aligned_cols=22 Identities=23% Similarity=0.389 Sum_probs=0.0
Q ss_pred CCcccchhHHHHHHHHHHHHhh
Q 047957 1 MLKLPLSLRTTMCLLFLFISFN 22 (211)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~ 22 (211)
|+.|-|..-+...||+.|..|+
T Consensus 1 MltLKi~Vy~vV~ffvsLFiFG 22 (38)
T PRK02655 1 MLALKISVYIVVFFFVGLFVFG 22 (38)
T ss_pred CeeEEeeehhhHHHHHHHHHcc
Done!