BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047958
(103 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q38836|AGL11_ARATH Agamous-like MADS-box protein AGL11 OS=Arabidopsis thaliana
GN=AGL11 PE=1 SV=1
Length = 230
Score = 93.2 bits (230), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 68/153 (44%), Positives = 83/153 (54%), Gaps = 54/153 (35%)
Query: 5 NSGTVTEINA---QQESVKLRQQIQMLQNSNKHLMRDSLSSLTVKELKQLENR------- 54
N+ TV EINA QQES KLRQQIQ +QNSN++LM DSLSSL+VKELKQ+ENR
Sbjct: 78 NTSTVQEINAAYYQQESAKLRQQIQTIQNSNRNLMGDSLSSLSVKELKQVENRLEKAISR 137
Query: 55 -----HE--------------------------------FQQAN--MATGQELNAIHALA 75
HE +QQ + M +G E+NAI ALA
Sbjct: 138 IRSKKHELLLVEIENAQKREIELDNENIYLRTKVAEVERYQQHHHQMVSGSEINAIEALA 197
Query: 76 SQNFFGPAIIEG-----GGSAYSHPDKKILHLG 103
S+N+F +I+ G +YS PDKKILHLG
Sbjct: 198 SRNYFAHSIMTAGSGSGNGGSYSDPDKKILHLG 230
>sp|Q2QW53|MAD13_ORYSJ MADS-box transcription factor 13 OS=Oryza sativa subsp. japonica
GN=MADS13 PE=1 SV=2
Length = 270
Score = 62.4 bits (150), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/54 (61%), Positives = 43/54 (79%), Gaps = 4/54 (7%)
Query: 7 GTVTEINAQQ----ESVKLRQQIQMLQNSNKHLMRDSLSSLTVKELKQLENRHE 56
+ E+NAQQ ES KLR QIQMLQN+NKHL+ D++S+L++KELKQLE+R E
Sbjct: 82 APLIEVNAQQYYQQESAKLRHQIQMLQNTNKHLVGDNVSNLSLKELKQLESRLE 135
>sp|P17839|AG_ARATH Floral homeotic protein AGAMOUS OS=Arabidopsis thaliana GN=AG PE=1
SV=2
Length = 252
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/55 (56%), Positives = 41/55 (74%), Gaps = 3/55 (5%)
Query: 5 NSGTVTEINAQ---QESVKLRQQIQMLQNSNKHLMRDSLSSLTVKELKQLENRHE 56
N+G+V EINAQ QES KLRQQI +QNSN+ LM +++ S++ KEL+ LE R E
Sbjct: 94 NTGSVAEINAQYYQQESAKLRQQIISIQNSNRQLMGETIGSMSPKELRNLEGRLE 148
>sp|Q40704|MADS3_ORYSJ MADS-box transcription factor 3 OS=Oryza sativa subsp. japonica
GN=MADS3 PE=2 SV=1
Length = 236
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/56 (55%), Positives = 45/56 (80%), Gaps = 4/56 (7%)
Query: 5 NSGTVTEINAQ---QESVKLRQQIQMLQNSN-KHLMRDSLSSLTVKELKQLENRHE 56
NSGTV E+NAQ QES KLRQQI LQN+N + ++ DS++++++++LKQ+ENR E
Sbjct: 78 NSGTVAEVNAQHYQQESSKLRQQISSLQNANSRTIVGDSINTMSLRDLKQVENRLE 133
>sp|Q01540|AG_BRANA Floral homeotic protein AGAMOUS OS=Brassica napus GN=AG1 PE=2 SV=1
Length = 252
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/53 (56%), Positives = 40/53 (75%), Gaps = 3/53 (5%)
Query: 5 NSGTVTEINAQ---QESVKLRQQIQMLQNSNKHLMRDSLSSLTVKELKQLENR 54
N+G+V EINAQ QES KLRQQI +QNSN+ LM +++ S++ KEL+ LE R
Sbjct: 94 NTGSVAEINAQYYQQESAKLRQQIISIQNSNRQLMGETIGSMSPKELRNLEGR 146
>sp|Q8RU31|MAD21_ORYSJ MADS-box transcription factor 21 OS=Oryza sativa subsp. japonica
GN=MADS21 PE=2 SV=1
Length = 265
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 40/55 (72%), Gaps = 4/55 (7%)
Query: 6 SGTVTEINA----QQESVKLRQQIQMLQNSNKHLMRDSLSSLTVKELKQLENRHE 56
S V ++N+ QQE+ K+R QIQ LQN+N+HL+ +S+ ++T KELK LENR E
Sbjct: 80 SAPVIDVNSHQYFQQEAAKMRHQIQTLQNANRHLIGESIGNMTAKELKSLENRLE 134
>sp|P29381|AGL1_ARATH Agamous-like MADS-box protein AGL1 OS=Arabidopsis thaliana GN=AGL1
PE=1 SV=1
Length = 248
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 42/59 (71%), Gaps = 3/59 (5%)
Query: 1 TELINSGTVTEINAQ---QESVKLRQQIQMLQNSNKHLMRDSLSSLTVKELKQLENRHE 56
++ +N +VTE N Q QE+ KLR+QI+ +QNSN+H++ +SL SL KELK LE R E
Sbjct: 89 SDAVNPPSVTEANTQYYQQEASKLRRQIRDIQNSNRHIVGESLGSLNFKELKNLEGRLE 147
>sp|Q2V0P1|MAD58_ORYSJ MADS-box transcription factor 58 OS=Oryza sativa subsp. japonica
GN=MADS58 PE=2 SV=1
Length = 272
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/53 (54%), Positives = 40/53 (75%), Gaps = 3/53 (5%)
Query: 5 NSGTVTEINAQ---QESVKLRQQIQMLQNSNKHLMRDSLSSLTVKELKQLENR 54
N+ TV EINAQ QE+ KL+QQI LQNSN+ L+ D+++++ +ELKQLE R
Sbjct: 120 NASTVAEINAQHYQQEAAKLKQQITNLQNSNRTLVGDNITTMNHRELKQLEGR 172
>sp|P29385|AGL5_ARATH Agamous-like MADS-box protein AGL5 OS=Arabidopsis thaliana GN=AGL5
PE=1 SV=1
Length = 246
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 42/59 (71%), Gaps = 3/59 (5%)
Query: 1 TELINSGTVTEINAQ---QESVKLRQQIQMLQNSNKHLMRDSLSSLTVKELKQLENRHE 56
++ +N T+TE N Q QE+ KLR+QI+ +QN N+H++ +SL SL KELK LE+R E
Sbjct: 89 SDAVNPPTITEANTQYYQQEASKLRRQIRDIQNLNRHILGESLGSLNFKELKNLESRLE 147
>sp|Q40872|AG_PANGI Floral homeotic protein AGAMOUS OS=Panax ginseng GN=AG2 PE=2 SV=1
Length = 242
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 43/59 (72%), Gaps = 3/59 (5%)
Query: 1 TELINSGTVTEINAQ---QESVKLRQQIQMLQNSNKHLMRDSLSSLTVKELKQLENRHE 56
T+ N+ +V+E NAQ QE+ KLRQ+I +Q +N+++M +SL SLTV++LK LE + E
Sbjct: 90 TDSPNTSSVSEANAQFYQQEASKLRQEISSIQKNNRNMMGESLGSLTVRDLKGLETKLE 148
>sp|Q43585|AG_TOBAC Floral homeotic protein AGAMOUS OS=Nicotiana tabacum GN=AG1 PE=2
SV=1
Length = 248
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 42/55 (76%), Gaps = 3/55 (5%)
Query: 5 NSGTVTEINAQ---QESVKLRQQIQMLQNSNKHLMRDSLSSLTVKELKQLENRHE 56
N+G+++E NAQ QE+ KLR QI LQN N++++ +SL++L++++LK LE + E
Sbjct: 94 NTGSISEANAQYYQQEASKLRAQIGNLQNQNRNMLGESLAALSLRDLKNLEQKIE 148
>sp|Q40168|AG_SOLLC Floral homeotic protein AGAMOUS OS=Solanum lycopersicum GN=AG1 PE=2
SV=1
Length = 248
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 39/55 (70%), Gaps = 3/55 (5%)
Query: 5 NSGTVTEINAQ---QESVKLRQQIQMLQNSNKHLMRDSLSSLTVKELKQLENRHE 56
N+G+V+E NAQ QE+ KLR QI L N N+++M ++L+ + +KELK LE R E
Sbjct: 94 NTGSVSEANAQYYQQEASKLRAQIGNLMNQNRNMMGEALAGMKLKELKNLEQRIE 148
>sp|Q40885|AG_PETHY Floral homeotic protein AGAMOUS OS=Petunia hybrida GN=AG1 PE=1 SV=1
Length = 242
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 39/55 (70%), Gaps = 3/55 (5%)
Query: 5 NSGTVTEINAQ---QESVKLRQQIQMLQNSNKHLMRDSLSSLTVKELKQLENRHE 56
N+G++ E NAQ QE+ KLR QI LQN N++ + +SL++L +++L+ LE + E
Sbjct: 94 NTGSIAEANAQYYQQEASKLRAQIGNLQNQNRNFLGESLAALNLRDLRNLEQKIE 148
>sp|Q6Z6W2|MAD57_ORYSJ MADS-box transcription factor 57 OS=Oryza sativa subsp. japonica
GN=MADS57 PE=2 SV=2
Length = 241
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 2 ELINSGTVTEIN-AQQESVKLRQQIQMLQNSNKHLMRDSLSSLTVKELKQLENRHEFQQA 60
EL+ +EI Q+E+ LRQQ+ LQ S+K LM + LS L V++L+ LENR E
Sbjct: 75 ELLGGNATSEIKIWQREAASLRQQLHNLQESHKQLMGEELSGLGVRDLQGLENRLEISLR 134
Query: 61 NM 62
N+
Sbjct: 135 NI 136
>sp|Q6EP49|MAD27_ORYSJ MADS-box transcription factor 27 OS=Oryza sativa subsp. japonica
GN=MADS27 PE=2 SV=2
Length = 240
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 40/63 (63%), Gaps = 3/63 (4%)
Query: 15 QQESVKLRQQIQMLQNSNKHLMRDSLSSLTVKELKQLENRHEFQQANMATGQE---LNAI 71
Q+E+ LRQQ+ LQ +++ LM + LS L VKEL+ LEN+ E ++ T ++ ++ I
Sbjct: 90 QREAASLRQQLHNLQENHRQLMGEDLSGLNVKELQSLENQLEISLRSVRTKKDHVLIDEI 149
Query: 72 HAL 74
H L
Sbjct: 150 HEL 152
>sp|Q0DEB8|MADS5_ORYSJ MADS-box transcription factor 5 OS=Oryza sativa subsp. japonica
GN=MADS5 PE=1 SV=1
Length = 225
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 39/57 (68%)
Query: 10 TEINAQQESVKLRQQIQMLQNSNKHLMRDSLSSLTVKELKQLENRHEFQQANMATGQ 66
TE++ QE +KL+ +++ LQ + ++L+ + L L++KEL+QLEN+ E N+ + +
Sbjct: 88 TELSNYQEYLKLKTRVEFLQTTQRNLLGEDLVPLSLKELEQLENQIEISLMNIRSSK 144
>sp|A2Y9P0|MADS5_ORYSI MADS-box transcription factor 5 OS=Oryza sativa subsp. indica
GN=MADS5 PE=2 SV=1
Length = 225
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 39/57 (68%)
Query: 10 TEINAQQESVKLRQQIQMLQNSNKHLMRDSLSSLTVKELKQLENRHEFQQANMATGQ 66
TE++ QE +KL+ +++ LQ + ++L+ + L L++KEL+QLEN+ E N+ + +
Sbjct: 88 TELSNYQEYLKLKTRVEFLQTTQRNLLGEDLVPLSLKELEQLENQIEISLMNIRSSK 144
>sp|Q7XUN2|MAD17_ORYSJ MADS-box transcription factor 17 OS=Oryza sativa subsp. japonica
GN=MADS17 PE=1 SV=2
Length = 249
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 30/42 (71%)
Query: 16 QESVKLRQQIQMLQNSNKHLMRDSLSSLTVKELKQLENRHEF 57
QE +L+ +++ LQ S +H++ + L L++KEL+QLE + E+
Sbjct: 93 QEMSRLKTKLECLQRSQRHMLGEDLGPLSIKELQQLEKQLEY 134
>sp|Q10PZ9|MADS1_ORYSJ MADS-box transcription factor 1 OS=Oryza sativa subsp. japonica
GN=MADS1 PE=1 SV=1
Length = 257
Score = 36.2 bits (82), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 34/46 (73%), Gaps = 1/46 (2%)
Query: 11 EINAQQESVKLRQQIQMLQNSNKHLMRDSLSSLTVKELKQLENRHE 56
EIN Q E +KL+ +++ LQ + ++++ + L L++KEL+QLEN+ E
Sbjct: 86 EINYQ-EYLKLKTRVEFLQTTQRNILGEDLGPLSMKELEQLENQIE 130
>sp|A2XDY1|MADS1_ORYSI MADS-box transcription factor 1 OS=Oryza sativa subsp. indica
GN=MADS1 PE=2 SV=2
Length = 257
Score = 36.2 bits (82), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 34/46 (73%), Gaps = 1/46 (2%)
Query: 11 EINAQQESVKLRQQIQMLQNSNKHLMRDSLSSLTVKELKQLENRHE 56
EIN Q E +KL+ +++ LQ + ++++ + L L++KEL+QLEN+ E
Sbjct: 86 EINYQ-EYLKLKTRVEFLQTTQRNILGEDLGPLSMKELEQLENQIE 130
>sp|O65874|MTF1_PEA MADS-box transcription factor 1 OS=Pisum sativum GN=MTF1 PE=2 SV=1
Length = 247
Score = 36.2 bits (82), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 31/44 (70%)
Query: 9 VTEINAQQESVKLRQQIQMLQNSNKHLMRDSLSSLTVKELKQLE 52
V E+++QQE +KL+ + + LQ S ++LM + L L+ K+L+ LE
Sbjct: 89 VLELSSQQEYLKLKARYESLQRSQRNLMGEDLGPLSSKDLETLE 132
>sp|Q03489|AGL9_PETHY Agamous-like MADS-box protein AGL9 homolog OS=Petunia hybrida
GN=FBP2 PE=1 SV=2
Length = 241
Score = 35.8 bits (81), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 32/49 (65%)
Query: 4 INSGTVTEINAQQESVKLRQQIQMLQNSNKHLMRDSLSSLTVKELKQLE 52
I++ EI++QQE +KL+ + + LQ S ++L+ + L L KEL+ LE
Sbjct: 82 ISTREALEISSQQEYLKLKARYEALQRSQRNLLGEDLGPLNSKELESLE 130
>sp|Q2QQA3|MAD20_ORYSJ MADS-box transcription factor 20 OS=Oryza sativa subsp. japonica
GN=MADS20 PE=2 SV=2
Length = 233
Score = 35.8 bits (81), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 34/49 (69%)
Query: 19 VKLRQQIQMLQNSNKHLMRDSLSSLTVKELKQLENRHEFQQANMATGQE 67
+KLR +I+ L+ S ++LM L SLT+++++QLEN+ + N+ + +E
Sbjct: 99 IKLRGRIEALKKSQRNLMGQELDSLTLQDIQQLENQIDTSLNNIRSRKE 147
>sp|O22456|SEP3_ARATH Developmental protein SEPALLATA 3 OS=Arabidopsis thaliana GN=SEP3
PE=1 SV=1
Length = 251
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 30/44 (68%)
Query: 9 VTEINAQQESVKLRQQIQMLQNSNKHLMRDSLSSLTVKELKQLE 52
E+++QQE +KL+++ LQ + ++L+ + L L+ KEL+ LE
Sbjct: 89 AVELSSQQEYLKLKERYDALQRTQRNLLGEDLGPLSTKELESLE 132
>sp|Q6EU39|MADS6_ORYSJ MADS-box transcription factor 6 OS=Oryza sativa subsp. japonica
GN=MADS6 PE=1 SV=1
Length = 250
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 27/40 (67%)
Query: 17 ESVKLRQQIQMLQNSNKHLMRDSLSSLTVKELKQLENRHE 56
E KL+ + + LQ + +HL+ + L L+VKEL+QLE + E
Sbjct: 92 EMSKLKAKFEALQRTQRHLLGEDLGPLSVKELQQLEKQLE 131
>sp|Q38694|AGL9_ARADE Agamous-like MADS-box protein AGL9 homolog OS=Aranda deborah PE=2
SV=1
Length = 250
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 29/40 (72%)
Query: 13 NAQQESVKLRQQIQMLQNSNKHLMRDSLSSLTVKELKQLE 52
++QQE +KL+ +++ LQ S ++L+ + L L KEL+QLE
Sbjct: 89 SSQQEYLKLKNRVEALQRSQRNLLGEDLGPLGSKELEQLE 128
>sp|Q84NC5|MAD25_ORYSJ MADS-box transcription factor 25 OS=Oryza sativa subsp. japonica
GN=MADS25 PE=2 SV=2
Length = 227
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 31/43 (72%)
Query: 15 QQESVKLRQQIQMLQNSNKHLMRDSLSSLTVKELKQLENRHEF 57
Q+E LRQQ+Q L ++N+ L+ + +S+ TV++L+ L+N+ E
Sbjct: 90 QREVTTLRQQVQNLHHNNRQLLGEEISNFTVRDLQLLQNQVEM 132
>sp|P29383|AGL3_ARATH Agamous-like MADS-box protein AGL3 OS=Arabidopsis thaliana GN=AGL3
PE=2 SV=2
Length = 258
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 28/37 (75%)
Query: 16 QESVKLRQQIQMLQNSNKHLMRDSLSSLTVKELKQLE 52
Q+ +KL+ ++++LQ+S +HL+ + LS + V EL+ LE
Sbjct: 93 QDYLKLKSRVEILQHSQRHLLGEELSEMDVNELEHLE 129
>sp|Q39685|CMB1_DIACA MADS-box protein CMB1 OS=Dianthus caryophyllus GN=CMB1 PE=2 SV=1
Length = 233
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 28/37 (75%)
Query: 16 QESVKLRQQIQMLQNSNKHLMRDSLSSLTVKELKQLE 52
QE +KL+ ++ +LQ S+++L+ + L L+ KEL+QLE
Sbjct: 92 QEYLKLKAKVDVLQRSHRNLLGEDLGELSTKELEQLE 128
>sp|Q42464|AGL9_SOLLC Agamous-like MADS-box protein AGL9 homolog OS=Solanum lycopersicum
GN=TDR5 PE=2 SV=1
Length = 224
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 32/49 (65%)
Query: 4 INSGTVTEINAQQESVKLRQQIQMLQNSNKHLMRDSLSSLTVKELKQLE 52
I++ EI++QQE +KL+ + + LQ S ++L+ + L L KEL+ LE
Sbjct: 82 ISTREALEISSQQEYLKLKGRYEALQRSQRNLLGEDLGPLNSKELESLE 130
>sp|O04067|AGL9_SINAL Agamous-like MADS-box protein AGL9 homolog OS=Sinapis alba GN=AGL9
PE=2 SV=1
Length = 254
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 30/44 (68%)
Query: 9 VTEINAQQESVKLRQQIQMLQNSNKHLMRDSLSSLTVKELKQLE 52
E+++QQE +KL+++ LQ + ++L+ + L L+ KEL+ LE
Sbjct: 89 AVELSSQQEYLKLKERYDALQRTQRNLLGEDLGPLSTKELELLE 132
>sp|Q0D4T4|MAD18_ORYSJ MADS-box transcription factor 18 OS=Oryza sativa subsp. japonica
GN=MADS18 PE=1 SV=1
Length = 249
Score = 32.7 bits (73), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 27/37 (72%)
Query: 21 LRQQIQMLQNSNKHLMRDSLSSLTVKELKQLENRHEF 57
L+ ++ LQ S + L+ + L +LT+KEL+QLE++ E+
Sbjct: 98 LKSKLDALQKSQRQLLGEQLDTLTIKELQQLEHQLEY 134
>sp|A2YNI2|MAD18_ORYSI MADS-box transcription factor 18 OS=Oryza sativa subsp. indica
GN=MADS18 PE=2 SV=2
Length = 249
Score = 32.7 bits (73), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 27/37 (72%)
Query: 21 LRQQIQMLQNSNKHLMRDSLSSLTVKELKQLENRHEF 57
L+ ++ LQ S + L+ + L +LT+KEL+QLE++ E+
Sbjct: 98 LKSKLDALQKSQRQLLGEQLDTLTIKELQQLEHQLEY 134
>sp|Q6VAM4|MAD23_ORYSJ MADS-box transcription factor 23 OS=Oryza sativa subsp. japonica
GN=MADS23 PE=2 SV=1
Length = 159
Score = 32.3 bits (72), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 30/48 (62%)
Query: 15 QQESVKLRQQIQMLQNSNKHLMRDSLSSLTVKELKQLENRHEFQQANM 62
QQE+ LRQQ+ LQ ++ L+ LS L V++L+ LE++ E N+
Sbjct: 90 QQEAASLRQQLHNLQEYHRQLLGQQLSGLDVEDLQNLESKLEMSLKNI 137
>sp|Q9SZJ6|AGL21_ARATH Agamous-like MADS-box protein AGL21 OS=Arabidopsis thaliana
GN=AGL21 PE=1 SV=1
Length = 228
Score = 32.3 bits (72), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 29/43 (67%)
Query: 15 QQESVKLRQQIQMLQNSNKHLMRDSLSSLTVKELKQLENRHEF 57
Q+E+ LRQ++ LQ +++ +M + L+ L+V EL LEN+ E
Sbjct: 90 QREAAVLRQELHALQENHRQMMGEQLNGLSVNELNSLENQIEI 132
>sp|Q9SAR1|MADS8_ORYSJ MADS-box transcription factor 8 OS=Oryza sativa subsp. japonica
GN=MADS8 PE=1 SV=1
Length = 248
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 30/40 (75%)
Query: 13 NAQQESVKLRQQIQMLQNSNKHLMRDSLSSLTVKELKQLE 52
+++ E +KL+ +++ LQ + ++L+ + L +L +KEL+QLE
Sbjct: 92 SSRNEYLKLKARVENLQRTQRNLLGEDLGTLGIKELEQLE 131
>sp|Q6Q9I2|MAD15_ORYSJ MADS-box transcription factor 15 OS=Oryza sativa subsp. japonica
GN=MADS15 PE=1 SV=2
Length = 267
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 29/45 (64%)
Query: 3 LINSGTVTEINAQQESVKLRQQIQMLQNSNKHLMRDSLSSLTVKE 47
LI++ + +E N E KL+ +I+ +Q +KHLM + L SL +KE
Sbjct: 80 LISAESESEGNWCHEYRKLKAKIETIQKCHKHLMGEDLESLNLKE 124
>sp|A4SFY3|GLYA_PROVI Serine hydroxymethyltransferase OS=Prosthecochloris vibrioformis
(strain DSM 265) GN=glyA PE=3 SV=1
Length = 441
Score = 31.2 bits (69), Expect = 1.9, Method: Composition-based stats.
Identities = 11/48 (22%), Positives = 30/48 (62%)
Query: 47 ELKQLENRHEFQQANMATGQELNAIHALASQNFFGPAIIEGGGSAYSH 94
++ ++++R F+ + TG+++ + +AS+NF A+++ GS ++
Sbjct: 4 DILKMQDREVFEAIALETGRQMETLELIASENFTSRAVMQACGSVMTN 51
>sp|Q40170|AGL8_SOLLC Agamous-like MADS-box protein AGL8 homolog OS=Solanum lycopersicum
GN=TDR4 PE=2 SV=1
Length = 227
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 33/51 (64%)
Query: 2 ELINSGTVTEINAQQESVKLRQQIQMLQNSNKHLMRDSLSSLTVKELKQLE 52
+L+ + + ++ E KL+ ++++LQ + KH + + L SL++KEL+ LE
Sbjct: 79 QLVPTDHTSPVSWTLEHRKLKARLEVLQRNQKHYVGEDLESLSMKELQNLE 129
>sp|P07942|LAMB1_HUMAN Laminin subunit beta-1 OS=Homo sapiens GN=LAMB1 PE=1 SV=2
Length = 1786
Score = 30.8 bits (68), Expect = 2.4, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 16 QESVKLRQQIQMLQNSNKHLMRDSLSSLTVKELKQLENRHEFQQANMA-TGQEL 68
+ES R++ +MLQN K L+ + S L + LK LE ++E Q + QEL
Sbjct: 1710 EESADARRKAEMLQNEAKTLLAQANSKLQL--LKDLERKYEDNQRYLEDKAQEL 1761
>sp|Q42429|AGL8_SOLTU Agamous-like MADS-box protein AGL8 homolog OS=Solanum tuberosum
PE=2 SV=1
Length = 250
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 25/36 (69%)
Query: 17 ESVKLRQQIQMLQNSNKHLMRDSLSSLTVKELKQLE 52
E KL+ ++++LQ + KH + + L SL +KEL+ LE
Sbjct: 94 EHAKLKARLEVLQRNQKHYVGEDLESLNMKELQNLE 129
>sp|Q0J466|MADS7_ORYSJ MADS-box transcription factor 7 OS=Oryza sativa subsp. japonica
GN=MADS7 PE=1 SV=2
Length = 249
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 28/39 (71%)
Query: 14 AQQESVKLRQQIQMLQNSNKHLMRDSLSSLTVKELKQLE 52
++ E +KL+ +++ LQ + ++L+ + L SL +KEL+ LE
Sbjct: 93 SRNEYLKLKARVENLQRTQRNLLGEDLDSLGIKELESLE 131
>sp|P0C5B0|MADS7_ORYSI MADS-box transcription factor 7 OS=Oryza sativa subsp. indica
GN=MADS7 PE=2 SV=2
Length = 249
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 28/39 (71%)
Query: 14 AQQESVKLRQQIQMLQNSNKHLMRDSLSSLTVKELKQLE 52
++ E +KL+ +++ LQ + ++L+ + L SL +KEL+ LE
Sbjct: 93 SRNEYLKLKARVENLQRTQRNLLGEDLDSLGIKELESLE 131
>sp|A2RVQ5|AGL16_ARATH Agamous-like MADS-box protein AGL16 OS=Arabidopsis thaliana
GN=AGL16 PE=1 SV=1
Length = 240
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 30/43 (69%)
Query: 15 QQESVKLRQQIQMLQNSNKHLMRDSLSSLTVKELKQLENRHEF 57
Q+E+ L++Q+ LQ +++ +M + LS L+V+ L+ LEN+ E
Sbjct: 90 QKEAAILKRQLHNLQENHRQMMGEELSGLSVEALQNLENQLEL 132
>sp|C4ZD46|CH60_EUBR3 60 kDa chaperonin OS=Eubacterium rectale (strain ATCC 33656 / VPI
0990) GN=groL PE=3 SV=1
Length = 541
Score = 30.4 bits (67), Expect = 3.4, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
Query: 56 EFQQANMATGQELNAIHALASQNFFGPAIIEGGGSAYSHPDKKILHL 102
E ++A + LNA A + II GGGSAY H KK+ L
Sbjct: 386 EMKEAKLRMEDALNATRAAVEE-----GIIAGGGSAYIHASKKVAEL 427
>sp|Q10CQ1|MAD14_ORYSJ MADS-box transcription factor 14 OS=Oryza sativa subsp. japonica
GN=MADS14 PE=1 SV=2
Length = 246
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 28/45 (62%)
Query: 3 LINSGTVTEINAQQESVKLRQQIQMLQNSNKHLMRDSLSSLTVKE 47
LI++ + T+ N E KL+ +++ +Q KHLM + L SL +KE
Sbjct: 80 LISAESDTQGNWCHEYRKLKAKVETIQKCQKHLMGEDLESLNLKE 124
>sp|P0C5B1|MAD14_ORYSI MADS-box transcription factor 14 OS=Oryza sativa subsp. indica
GN=MADS14 PE=2 SV=1
Length = 246
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 28/45 (62%)
Query: 3 LINSGTVTEINAQQESVKLRQQIQMLQNSNKHLMRDSLSSLTVKE 47
LI++ + T+ N E KL+ +++ +Q KHLM + L SL +KE
Sbjct: 80 LISAESDTQGNWCHEYRKLKAKVETIQKCQKHLMGEDLESLNLKE 124
>sp|B2S0W8|ACKA_BORHD Acetate kinase OS=Borrelia hermsii (strain DAH) GN=ackA PE=3 SV=1
Length = 408
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 37/64 (57%), Gaps = 6/64 (9%)
Query: 1 TELINSGTVTEINAQQESVKLRQQIQMLQNSNKHL------MRDSLSSLTVKELKQLENR 54
T+++ SGT+ +I ++ ++++ Q +L+ +KH+ ++ + LT K+L + N
Sbjct: 23 TQILASGTIEKIKTKKSIIRIKTQNDLLEKIDKHIKSHKEALKQLIKILTNKKLNIINNL 82
Query: 55 HEFQ 58
+E Q
Sbjct: 83 NEIQ 86
>sp|Q38876|AGL8_ARATH Agamous-like MADS-box protein AGL8 OS=Arabidopsis thaliana GN=AGL8
PE=1 SV=1
Length = 242
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 26/36 (72%)
Query: 17 ESVKLRQQIQMLQNSNKHLMRDSLSSLTVKELKQLE 52
E KL+ ++++L+ + ++ M + L SL++KEL+ LE
Sbjct: 94 EHAKLKARVEVLEKNKRNFMGEDLDSLSLKELQSLE 129
>sp|P29384|SEP2_ARATH Developmental protein SEPALLATA 2 OS=Arabidopsis thaliana GN=SEP2
PE=1 SV=1
Length = 250
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 4 INSGTVTEI-NAQQESVKLRQQIQMLQNSNKHLMRDSLSSLTVKELKQLE 52
+N+ E+ N+ +E +KL+ + + LQ ++L+ + L L KEL+QLE
Sbjct: 80 VNNKPAKELENSYREYLKLKGRYENLQRQQRNLLGEDLGPLNSKELEQLE 129
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.126 0.337
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,532,212
Number of Sequences: 539616
Number of extensions: 1077332
Number of successful extensions: 3793
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 3708
Number of HSP's gapped (non-prelim): 105
length of query: 103
length of database: 191,569,459
effective HSP length: 72
effective length of query: 31
effective length of database: 152,717,107
effective search space: 4734230317
effective search space used: 4734230317
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)