Query 047958
Match_columns 103
No_of_seqs 107 out of 1031
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 04:56:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047958.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047958hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01486 K-box: K-box region; 99.1 3.4E-10 7.3E-15 75.8 6.2 44 13-56 16-59 (100)
2 PF06698 DUF1192: Protein of u 81.8 1 2.2E-05 28.0 1.6 19 34-52 12-30 (59)
3 KOG0014 MADS box transcription 77.5 2.1 4.6E-05 30.6 2.4 42 15-56 113-158 (195)
4 PF04508 Pox_A_type_inc: Viral 50.6 22 0.00049 18.1 2.4 16 17-32 2-17 (23)
5 PF07106 TBPIP: Tat binding pr 42.1 87 0.0019 22.2 5.3 7 43-49 109-115 (169)
6 PF03250 Tropomodulin: Tropomo 37.2 21 0.00046 25.9 1.4 17 40-56 21-37 (147)
7 PTZ00108 DNA topoisomerase 2-l 36.3 29 0.00064 33.2 2.5 42 15-56 1101-1142(1388)
8 PLN03128 DNA topoisomerase 2; 34.9 28 0.00061 32.6 2.1 42 15-56 1094-1135(1135)
9 PHA02592 52 DNA topisomerase I 34.7 21 0.00046 29.9 1.3 39 15-53 401-439 (439)
10 PLN03237 DNA topoisomerase 2; 31.5 41 0.00089 32.5 2.7 42 15-56 1125-1166(1465)
11 KOG3156 Uncharacterized membra 30.6 55 0.0012 25.3 2.8 22 13-34 120-141 (220)
12 PF08656 DASH_Dad3: DASH compl 30.6 1E+02 0.0022 20.1 3.7 46 11-56 5-51 (78)
13 PF14775 NYD-SP28_assoc: Sperm 23.7 1.1E+02 0.0024 18.6 2.8 21 15-35 39-59 (60)
14 PF10224 DUF2205: Predicted co 23.5 75 0.0016 20.7 2.1 23 15-37 43-65 (80)
15 PF05306 DUF733: Protein of un 22.6 2.3E+02 0.0049 18.8 4.3 18 39-56 43-60 (88)
16 PF11460 DUF3007: Protein of u 22.4 51 0.0011 22.6 1.2 18 39-56 86-103 (104)
17 KOG4797 Transcriptional regula 21.6 1E+02 0.0022 21.6 2.6 41 15-55 66-109 (123)
18 PF09006 Surfac_D-trimer: Lung 20.9 92 0.002 18.4 1.9 14 20-33 3-16 (46)
19 PF14282 FlxA: FlxA-like prote 20.2 2.8E+02 0.006 18.4 5.7 34 13-48 16-49 (106)
20 PF04697 Pinin_SDK_N: pinin/SD 20.1 1.5E+02 0.0032 21.3 3.2 35 11-45 5-39 (134)
No 1
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=99.08 E-value=3.4e-10 Score=75.81 Aligned_cols=44 Identities=48% Similarity=0.635 Sum_probs=42.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCHHHHHHHHHHHH
Q 047958 13 NAQQESVKLRQQIQMLQNSNKHLMRDSLSSLTVKELKQLENRHE 56 (103)
Q Consensus 13 ~~~~E~~~Lr~eie~Lq~~~R~l~GEdL~~Ls~~EL~~LE~qLe 56 (103)
.++.++++|+.+++.|+..+|+|+|+||++|+++||.+||++|+
T Consensus 16 ~~~~e~~~L~~~~~~L~~~~R~~~GedL~~Ls~~eL~~LE~~Le 59 (100)
T PF01486_consen 16 ELQQEIAKLRKENESLQKELRHLMGEDLESLSLKELQQLEQQLE 59 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHhhh
Confidence 34899999999999999999999999999999999999999999
No 2
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=81.84 E-value=1 Score=27.96 Aligned_cols=19 Identities=37% Similarity=0.487 Sum_probs=16.2
Q ss_pred ccCCCCCCCCCHHHHHHHH
Q 047958 34 HLMRDSLSSLTVKELKQLE 52 (103)
Q Consensus 34 ~l~GEdL~~Ls~~EL~~LE 52 (103)
+..|+||+.||++||..==
T Consensus 12 ~~ig~dLs~lSv~EL~~RI 30 (59)
T PF06698_consen 12 HEIGEDLSLLSVEELEERI 30 (59)
T ss_pred cccCCCchhcCHHHHHHHH
Confidence 6789999999999997533
No 3
>KOG0014 consensus MADS box transcription factor [Transcription]
Probab=77.49 E-value=2.1 Score=30.61 Aligned_cols=42 Identities=26% Similarity=0.340 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHH---hcccCCCCCCCCCH-HHHHHHHHHHH
Q 047958 15 QQESVKLRQQIQMLQNS---NKHLMRDSLSSLTV-KELKQLENRHE 56 (103)
Q Consensus 15 ~~E~~~Lr~eie~Lq~~---~R~l~GEdL~~Ls~-~EL~~LE~qLe 56 (103)
......++..++.|+.. .++++|+++.++++ .+|..+|.+++
T Consensus 113 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~l~~~~~~l~ 158 (195)
T KOG0014|consen 113 KSLESSLKVDPEDLELLELEQRKLTGEDLQSLSSLNELNSLESQLE 158 (195)
T ss_pred hhhhhhhhcchhhhhhhHHHHHHHhccccccCCHHHHhcchhhHHH
Confidence 34556677777777644 89999999999999 99999999998
No 4
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=50.64 E-value=22 Score=18.07 Aligned_cols=16 Identities=31% Similarity=0.376 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHh
Q 047958 17 ESVKLRQQIQMLQNSN 32 (103)
Q Consensus 17 E~~~Lr~eie~Lq~~~ 32 (103)
|+.++|..|..|++.+
T Consensus 2 E~~rlr~rI~dLer~L 17 (23)
T PF04508_consen 2 EMNRLRNRISDLERQL 17 (23)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 6778888888888765
No 5
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=42.08 E-value=87 Score=22.16 Aligned_cols=7 Identities=43% Similarity=0.453 Sum_probs=2.8
Q ss_pred CCHHHHH
Q 047958 43 LTVKELK 49 (103)
Q Consensus 43 Ls~~EL~ 49 (103)
++..||.
T Consensus 109 ~t~~el~ 115 (169)
T PF07106_consen 109 PTNEELR 115 (169)
T ss_pred CCHHHHH
Confidence 3444433
No 6
>PF03250 Tropomodulin: Tropomodulin; InterPro: IPR004934 Actin filaments have an intrinsic polarity, each with a fast-growing (barbed) end and a slow-growing (pointed) end. To regulate the dynamics at these ends, capping proteins have evolved that specifically bind to either the barbed or the pointed ends of the filament, where they block the association and dissociation of monomers. Pointed ends, for which actin monomers have significantly lower association and dissociation rate-constants than for barbed, are capped by either the Arp2/3 complex or tropomodulins []. Tropomodulin is a novel tropomyosin regulatory protein that binds to the end of erythrocyte tropomyosin and blocks head-to-tail association of tropomyosin along actin filaments []. Limited proteolysis shows this protein is composed of two domains. The unstructured tropomyosin-binding region at the N terminus has an actin pointed-end-capping activity that is dramatically up-regulated by tropomyosin coating of the actin filament[]. The second region is found near the C terminus. This tropomyosin-independent capping-domain caps pure actin. ; GO: 0005523 tropomyosin binding, 0005856 cytoskeleton
Probab=37.21 E-value=21 Score=25.93 Aligned_cols=17 Identities=47% Similarity=0.669 Sum_probs=15.3
Q ss_pred CCCCCHHHHHHHHHHHH
Q 047958 40 LSSLTVKELKQLENRHE 56 (103)
Q Consensus 40 L~~Ls~~EL~~LE~qLe 56 (103)
|..||.+||.+|+..|+
T Consensus 21 L~~LS~EEL~~L~~el~ 37 (147)
T PF03250_consen 21 LAKLSPEELEELENELE 37 (147)
T ss_pred HHhCCHHHHHHHHHHHH
Confidence 46899999999999887
No 7
>PTZ00108 DNA topoisomerase 2-like protein; Provisional
Probab=36.26 E-value=29 Score=33.24 Aligned_cols=42 Identities=14% Similarity=0.274 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHhcccCCCCCCCCCHHHHHHHHHHHH
Q 047958 15 QQESVKLRQQIQMLQNSNKHLMRDSLSSLTVKELKQLENRHE 56 (103)
Q Consensus 15 ~~E~~~Lr~eie~Lq~~~R~l~GEdL~~Ls~~EL~~LE~qLe 56 (103)
..++.+|+++++.++..+..|..-....|+.+||..+++.++
T Consensus 1101 ~e~v~kL~~e~~~~~~e~~~L~~~t~~~lw~~DL~~~~~~~~ 1142 (1388)
T PTZ00108 1101 KEKVEKLNAELEKKEKELEKLKNTTPKDMWLEDLDKFEEALE 1142 (1388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 678899999999999999999999999999999999999998
No 8
>PLN03128 DNA topoisomerase 2; Provisional
Probab=34.91 E-value=28 Score=32.64 Aligned_cols=42 Identities=17% Similarity=0.201 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHhcccCCCCCCCCCHHHHHHHHHHHH
Q 047958 15 QQESVKLRQQIQMLQNSNKHLMRDSLSSLTVKELKQLENRHE 56 (103)
Q Consensus 15 ~~E~~~Lr~eie~Lq~~~R~l~GEdL~~Ls~~EL~~LE~qLe 56 (103)
..++.+|+++.+.++..+..+..-.-.+|+.+||..+|+.++
T Consensus 1094 ~e~~~kL~~e~~~~~~ei~~l~~~t~~~~w~~DLd~~~~~~~ 1135 (1135)
T PLN03128 1094 LEKVDELRAERAKKETEVEELKKTTPEDLWRKDLDAFEEALD 1135 (1135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhC
Confidence 568899999999999999999988888999999999998774
No 9
>PHA02592 52 DNA topisomerase II medium subunit; Provisional
Probab=34.69 E-value=21 Score=29.90 Aligned_cols=39 Identities=18% Similarity=0.331 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHhcccCCCCCCCCCHHHHHHHHH
Q 047958 15 QQESVKLRQQIQMLQNSNKHLMRDSLSSLTVKELKQLEN 53 (103)
Q Consensus 15 ~~E~~~Lr~eie~Lq~~~R~l~GEdL~~Ls~~EL~~LE~ 53 (103)
..+..+|+++++.|+..+..+.......+..+||..+++
T Consensus 401 ~~e~~kL~~e~~~l~~ei~~l~~~t~~~~w~~DL~~~~~ 439 (439)
T PHA02592 401 SDEREKLQKEAEELEKEHEYWKKTTAKKEYIKDLEELKK 439 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 567788888888888888888887888888888888763
No 10
>PLN03237 DNA topoisomerase 2; Provisional
Probab=31.47 E-value=41 Score=32.50 Aligned_cols=42 Identities=21% Similarity=0.240 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHhcccCCCCCCCCCHHHHHHHHHHHH
Q 047958 15 QQESVKLRQQIQMLQNSNKHLMRDSLSSLTVKELKQLENRHE 56 (103)
Q Consensus 15 ~~E~~~Lr~eie~Lq~~~R~l~GEdL~~Ls~~EL~~LE~qLe 56 (103)
..++.+|.++++.++..+..+.+-.-..|+.+||..||..|+
T Consensus 1125 ~E~~~kL~~~~~~k~~el~~l~~~t~~~lW~~DLd~f~~~~~ 1166 (1465)
T PLN03237 1125 LEKVQELCADRDKLNIEVEDLKKTTPKSLWLKDLDALEKELD 1166 (1465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 678899999999999999999999999999999999999999
No 11
>KOG3156 consensus Uncharacterized membrane protein [Function unknown]
Probab=30.65 E-value=55 Score=25.29 Aligned_cols=22 Identities=32% Similarity=0.537 Sum_probs=18.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhcc
Q 047958 13 NAQQESVKLRQQIQMLQNSNKH 34 (103)
Q Consensus 13 ~~~~E~~~Lr~eie~Lq~~~R~ 34 (103)
+.+.|.++|+.+++.++..+|+
T Consensus 120 ~lr~e~EklkndlEk~ks~lr~ 141 (220)
T KOG3156|consen 120 NLRAENEKLKNDLEKLKSSLRH 141 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4478888899999999888887
No 12
>PF08656 DASH_Dad3: DASH complex subunit Dad3; InterPro: IPR013965 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ].
Probab=30.63 E-value=1e+02 Score=20.05 Aligned_cols=46 Identities=24% Similarity=0.303 Sum_probs=35.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhcccCC-CCCCCCCHHHHHHHHHHHH
Q 047958 11 EINAQQESVKLRQQIQMLQNSNKHLMR-DSLSSLTVKELKQLENRHE 56 (103)
Q Consensus 11 e~~~~~E~~~Lr~eie~Lq~~~R~l~G-EdL~~Ls~~EL~~LE~qLe 56 (103)
|...-.|+++|-.....|-..++.+.. .+-..--++.|..||+++-
T Consensus 5 Eq~VL~eY~~La~~L~~L~~~l~~L~~~~~~~~~lL~~LR~LE~K~g 51 (78)
T PF08656_consen 5 EQEVLDEYQRLADNLKTLSDTLKDLNSSNSPSEELLDGLRELERKIG 51 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHH
Confidence 444568899999999999999999832 2233466889999999988
No 13
>PF14775 NYD-SP28_assoc: Sperm tail C-terminal domain
Probab=23.70 E-value=1.1e+02 Score=18.64 Aligned_cols=21 Identities=33% Similarity=0.241 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHhccc
Q 047958 15 QQESVKLRQQIQMLQNSNKHL 35 (103)
Q Consensus 15 ~~E~~~Lr~eie~Lq~~~R~l 35 (103)
..|...|++++..|+..++++
T Consensus 39 ~~e~~~L~~qN~eLr~lLkqY 59 (60)
T PF14775_consen 39 IQEKESLEQQNEELRSLLKQY 59 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 567788888888888777665
No 14
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=23.48 E-value=75 Score=20.67 Aligned_cols=23 Identities=30% Similarity=0.362 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHhcccCC
Q 047958 15 QQESVKLRQQIQMLQNSNKHLMR 37 (103)
Q Consensus 15 ~~E~~~Lr~eie~Lq~~~R~l~G 37 (103)
+.|..+|+.+++.|+..+..||-
T Consensus 43 k~E~~kL~~EN~~Lq~YI~nLm~ 65 (80)
T PF10224_consen 43 KEENEKLESENEYLQQYIGNLMS 65 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667777777777776666553
No 15
>PF05306 DUF733: Protein of unknown function (DUF733); InterPro: IPR007970 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=22.65 E-value=2.3e+02 Score=18.83 Aligned_cols=18 Identities=28% Similarity=0.473 Sum_probs=16.3
Q ss_pred CCCCCCHHHHHHHHHHHH
Q 047958 39 SLSSLTVKELKQLENRHE 56 (103)
Q Consensus 39 dL~~Ls~~EL~~LE~qLe 56 (103)
++..||++||..|.+++.
T Consensus 43 ~~~~cs~~dl~~l~RE~~ 60 (88)
T PF05306_consen 43 NLKTCSVDDLKALNRELQ 60 (88)
T ss_pred hhhhCCHHHHHHHHHHHH
Confidence 778999999999998887
No 16
>PF11460 DUF3007: Protein of unknown function (DUF3007); InterPro: IPR021562 This is a family of uncharacterised proteins found in bacteria and eukaryotes.
Probab=22.37 E-value=51 Score=22.63 Aligned_cols=18 Identities=33% Similarity=0.462 Sum_probs=15.4
Q ss_pred CCCCCCHHHHHHHHHHHH
Q 047958 39 SLSSLTVKELKQLENRHE 56 (103)
Q Consensus 39 dL~~Ls~~EL~~LE~qLe 56 (103)
.+++|+.+|+..|..++|
T Consensus 86 Rle~l~~eE~~~L~~eie 103 (104)
T PF11460_consen 86 RLEELSPEELEALQAEIE 103 (104)
T ss_pred HHHhCCHHHHHHHHHHhc
Confidence 367899999999998875
No 17
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=21.62 E-value=1e+02 Score=21.63 Aligned_cols=41 Identities=29% Similarity=0.412 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHhcccCCCC--C-CCCCHHHHHHHHHHH
Q 047958 15 QQESVKLRQQIQMLQNSNKHLMRDS--L-SSLTVKELKQLENRH 55 (103)
Q Consensus 15 ~~E~~~Lr~eie~Lq~~~R~l~GEd--L-~~Ls~~EL~~LE~qL 55 (103)
+.|.+-||.+|..|....+.+..|+ | ...+.+.|.+|--++
T Consensus 66 REEVe~Lk~qI~eL~er~~~Le~EN~lLk~~~spe~L~ql~~~~ 109 (123)
T KOG4797|consen 66 REEVEVLKEQIRELEERNSALERENSLLKTLASPEQLAQLPAQL 109 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHhc
Confidence 5677788888888887777776665 1 345566666655443
No 18
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=20.85 E-value=92 Score=18.40 Aligned_cols=14 Identities=43% Similarity=0.582 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHhc
Q 047958 20 KLRQQIQMLQNSNK 33 (103)
Q Consensus 20 ~Lr~eie~Lq~~~R 33 (103)
.||++++.|+..+|
T Consensus 3 aLrqQv~aL~~qv~ 16 (46)
T PF09006_consen 3 ALRQQVEALQGQVQ 16 (46)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34555555544443
No 19
>PF14282 FlxA: FlxA-like protein
Probab=20.24 E-value=2.8e+02 Score=18.45 Aligned_cols=34 Identities=26% Similarity=0.392 Sum_probs=25.6
Q ss_pred hHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCHHHH
Q 047958 13 NAQQESVKLRQQIQMLQNSNKHLMRDSLSSLTVKEL 48 (103)
Q Consensus 13 ~~~~E~~~Lr~eie~Lq~~~R~l~GEdL~~Ls~~EL 48 (103)
+....++.|+++|..|+..++.+... .+++.++-
T Consensus 16 ~~~~~I~~L~~Qi~~Lq~ql~~l~~~--~~~~~e~k 49 (106)
T PF14282_consen 16 SSDSQIEQLQKQIKQLQEQLQELSQD--SDLDAEQK 49 (106)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHcc--cCCCHHHH
Confidence 33788999999999999999987773 33455533
No 20
>PF04697 Pinin_SDK_N: pinin/SDK conserved region; InterPro: IPR006787 This conserved region is found at the N-terminal of the member proteins. It is located adjacent and N-terminal to the pinin/SKD/memA domain IPR006786 from INTERPRO. Members of this family have very varied localisations within the eukaryotic cell. Pinin is known to localise at the desmosomes and is implicated in anchoring intermediate filaments to the desmosomal plaque [, ]. SDK2/3 is a dynamically localised nuclear protein thought to be involved in modulation of alternative pre-mRNA splicing []. MemA is a tumour marker preferentially expressed in human melanoma cell lines. A common feature of the members of this family is that they may all participate in regulating protein-protein interactions [].
Probab=20.11 E-value=1.5e+02 Score=21.25 Aligned_cols=35 Identities=14% Similarity=0.070 Sum_probs=27.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCH
Q 047958 11 EINAQQESVKLRQQIQMLQNSNKHLMRDSLSSLTV 45 (103)
Q Consensus 11 e~~~~~E~~~Lr~eie~Lq~~~R~l~GEdL~~Ls~ 45 (103)
-..++.++++.|..+..+-..||+++|.|-..+..
T Consensus 5 v~~Lq~qlE~Ake~Lk~vDenIkKltGRDp~e~rp 39 (134)
T PF04697_consen 5 VRTLQAQLEKAKESLKNVDENIKKLTGRDPSENRP 39 (134)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHhCCCccccCc
Confidence 34457888888999999999999999999655543
Done!