Query 047958
Match_columns 103
No_of_seqs 107 out of 1031
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 08:08:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047958.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047958hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1a93_B MAX protein, coiled coi 66.4 5.9 0.0002 21.3 2.8 22 14-35 12-33 (34)
2 1go4_E MAD1 (mitotic arrest de 41.4 31 0.0011 22.5 3.7 24 14-37 73-96 (100)
3 3oa7_A Head morphogenesis prot 33.3 40 0.0014 24.7 3.5 37 15-51 50-86 (206)
4 1wmi_B RELB, hypothetical prot 33.0 81 0.0028 18.9 5.6 37 15-54 10-47 (67)
5 4dzn_A Coiled-coil peptide CC- 30.6 49 0.0017 17.1 2.6 18 15-32 8-25 (33)
6 1g6u_A Domain swapped dimer; d 27.1 86 0.0029 17.4 4.8 16 41-56 15-30 (48)
7 3qx3_A DNA topoisomerase 2-bet 26.7 24 0.00083 30.7 1.6 42 15-56 733-774 (803)
8 3l4j_A DNA topoisomerase 2; to 26.7 24 0.00083 30.5 1.6 42 15-56 706-747 (757)
9 3ra3_B P2F; coiled coil domain 22.3 85 0.0029 15.6 3.0 18 15-32 6-23 (28)
10 1t6f_A Geminin; coiled-coil, c 20.5 93 0.0032 16.7 2.6 15 15-29 20-34 (37)
No 1
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=66.37 E-value=5.9 Score=21.29 Aligned_cols=22 Identities=27% Similarity=0.366 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHhccc
Q 047958 14 AQQESVKLRQQIQMLQNSNKHL 35 (103)
Q Consensus 14 ~~~E~~~Lr~eie~Lq~~~R~l 35 (103)
.++++..||+++..|+..+|.+
T Consensus 12 ~qqDIddlkrQN~~Le~Qir~l 33 (34)
T 1a93_B 12 HQQDIDDLKRQNALLEQQVRAL 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHhhHHHHHHHHHHHHHHHHhc
Confidence 3899999999999999998875
No 2
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=41.44 E-value=31 Score=22.48 Aligned_cols=24 Identities=13% Similarity=0.267 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCC
Q 047958 14 AQQESVKLRQQIQMLQNSNKHLMR 37 (103)
Q Consensus 14 ~~~E~~~Lr~eie~Lq~~~R~l~G 37 (103)
...++.+|+.+++.|+..+|.|.+
T Consensus 73 ~~~~~e~Lq~E~erLr~~v~~lEe 96 (100)
T 1go4_E 73 LREDHSQLQAECERLRGLLRAMER 96 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 378899999999999999998766
No 3
>3oa7_A Head morphogenesis protein, chaotic nuclear migra protein 67 fusion protein; coiled coils, structural protein, spindle POLE BODY; 2.30A {Bacillus phage PHI29}
Probab=33.28 E-value=40 Score=24.73 Aligned_cols=37 Identities=16% Similarity=0.250 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHhcccCCCCCCCCCHHHHHHH
Q 047958 15 QQESVKLRQQIQMLQNSNKHLMRDSLSSLTVKELKQL 51 (103)
Q Consensus 15 ~~E~~~Lr~eie~Lq~~~R~l~GEdL~~Ls~~EL~~L 51 (103)
....++++.++..|+..++++.|.--+.++++.+.+.
T Consensus 50 ~~s~~~l~ae~~~L~~~l~kLeGn~se~ITfe~~~ks 86 (206)
T 3oa7_A 50 TKSHNTLSKELDNLRSRFGNLEGNTSERITIKNILQS 86 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCGGGCCCHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHccCCHHhccCHHHHhhc
Confidence 5666788999999999999999988888888888876
No 4
>1wmi_B RELB, hypothetical protein PHS014; toxin-antitoxin complex, hydrolase-hydrolase inhibitor compl; 2.30A {Pyrococcus horikoshii} SCOP: a.137.13.1
Probab=32.99 E-value=81 Score=18.94 Aligned_cols=37 Identities=22% Similarity=0.224 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHhc-ccCCCCCCCCCHHHHHHHHHH
Q 047958 15 QQESVKLRQQIQMLQNSNK-HLMRDSLSSLTVKELKQLENR 54 (103)
Q Consensus 15 ~~E~~~Lr~eie~Lq~~~R-~l~GEdL~~Ls~~EL~~LE~q 54 (103)
-.|+.+||.+|..|+.-+- -.-||| ++=+||..|+..
T Consensus 10 l~ELeRlkveiQRLE~ml~p~~~~e~---v~eeEl~ei~~e 47 (67)
T 1wmi_B 10 LKELERLKVEIQRLEAMLMPEERDED---ITEEEIAELLEL 47 (67)
T ss_dssp HHHHHHHHHHHHHHHHHTSCBCCCTT---CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccccCCCC---CCHHHHHHHHHH
Confidence 6789999999999987654 233444 777888888764
No 5
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=30.58 E-value=49 Score=17.08 Aligned_cols=18 Identities=28% Similarity=0.344 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 047958 15 QQESVKLRQQIQMLQNSN 32 (103)
Q Consensus 15 ~~E~~~Lr~eie~Lq~~~ 32 (103)
.+|++.|+++|..|.-.+
T Consensus 8 kqeiaalkkeiaalkfei 25 (33)
T 4dzn_A 8 KQEIAALKKEIAALKFEI 25 (33)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 667777777777765443
No 6
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=27.14 E-value=86 Score=17.39 Aligned_cols=16 Identities=25% Similarity=0.401 Sum_probs=12.9
Q ss_pred CCCCHHHHHHHHHHHH
Q 047958 41 SSLTVKELKQLENRHE 56 (103)
Q Consensus 41 ~~Ls~~EL~~LE~qLe 56 (103)
+++|.+||-.||..|+
T Consensus 15 egfspeelaaleselq 30 (48)
T 1g6u_A 15 EGFSPEELAALESELQ 30 (48)
T ss_dssp TTCSHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHH
Confidence 3588999988888776
No 7
>3qx3_A DNA topoisomerase 2-beta; toprim domain, winged-helix domain, coiled-coil domain, DNA and cleavage, nucleus; HET: DNA EVP; 2.16A {Homo sapiens} PDB: 4fm9_A*
Probab=26.70 E-value=24 Score=30.71 Aligned_cols=42 Identities=19% Similarity=0.172 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHhcccCCCCCCCCCHHHHHHHHHHHH
Q 047958 15 QQESVKLRQQIQMLQNSNKHLMRDSLSSLTVKELKQLENRHE 56 (103)
Q Consensus 15 ~~E~~~Lr~eie~Lq~~~R~l~GEdL~~Ls~~EL~~LE~qLe 56 (103)
..++.+|.++.+..+..+..+..-.-.+|+.+||..++..++
T Consensus 733 ~E~~~kL~~q~~~k~~El~~L~~~t~~dlW~~DLd~f~~~~~ 774 (803)
T 3qx3_A 733 KEKVEELIKQRDAKGREVNDLKRKSPSDLWKEDLAAFVEELD 774 (803)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 678999999999999999999999999999999999999998
No 8
>3l4j_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, covalently linked comple supercoiling; HET: DNA PTR TSP; 2.48A {Saccharomyces cerevisiae} SCOP: e.11.1.1 PDB: 3l4k_A* 1bjt_A 1bgw_A 2rgr_A*
Probab=26.69 E-value=24 Score=30.50 Aligned_cols=42 Identities=21% Similarity=0.189 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHhcccCCCCCCCCCHHHHHHHHHHHH
Q 047958 15 QQESVKLRQQIQMLQNSNKHLMRDSLSSLTVKELKQLENRHE 56 (103)
Q Consensus 15 ~~E~~~Lr~eie~Lq~~~R~l~GEdL~~Ls~~EL~~LE~qLe 56 (103)
..++.+|.++.+..+..+..+..-.-.+|+.+||..++..++
T Consensus 706 ~E~~~kL~~q~~~k~~El~~L~~~t~~dlW~~DLd~f~~~~~ 747 (757)
T 3l4j_A 706 KERYQKLLKQKQEKETELENLLKLSAKDIWNTDLKAFEVGYQ 747 (757)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 678999999999999999999999999999999999999887
No 9
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=22.28 E-value=85 Score=15.61 Aligned_cols=18 Identities=28% Similarity=0.464 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 047958 15 QQESVKLRQQIQMLQNSN 32 (103)
Q Consensus 15 ~~E~~~Lr~eie~Lq~~~ 32 (103)
.+.-++|+++|..|+-.+
T Consensus 6 kqknarlkqeiaaleyei 23 (28)
T 3ra3_B 6 KQKNARLKQEIAALEYEI 23 (28)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHH
Confidence 456677888888877654
No 10
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=20.45 E-value=93 Score=16.73 Aligned_cols=15 Identities=20% Similarity=0.370 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHH
Q 047958 15 QQESVKLRQQIQMLQ 29 (103)
Q Consensus 15 ~~E~~~Lr~eie~Lq 29 (103)
..++++||.+++.|.
T Consensus 20 deeIa~Lk~eN~eL~ 34 (37)
T 1t6f_A 20 DNEIARLKKENKELA 34 (37)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHH
Confidence 455666666665553
Done!