Query 047958
Match_columns 103
No_of_seqs 107 out of 1031
Neff 5.7
Searched_HMMs 13730
Date Mon Mar 25 08:09:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047958.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/047958hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1bjta_ e.11.1.1 (A:) DNA topo 31.4 8.3 0.0006 30.9 1.5 42 15-56 708-749 (760)
2 d2jn6a1 a.4.1.19 (A:1-89) Unch 18.4 14 0.001 21.1 0.3 21 15-35 65-85 (89)
3 d1tuza_ a.39.1.7 (A:) Diacylgl 14.2 68 0.0049 19.0 2.9 21 36-56 1-21 (118)
4 d2paga1 d.369.1.1 (A:1-135) Hy 12.2 1.5E+02 0.011 18.0 4.3 34 22-56 2-35 (135)
5 d1x4ta1 a.2.15.1 (A:7-86) Pre- 11.1 1.3E+02 0.0096 17.2 3.4 26 15-40 52-77 (80)
6 d2oa5a1 d.362.1.1 (A:7-102) Un 10.9 95 0.0069 18.5 2.8 35 13-47 6-42 (96)
7 d1a4pa_ a.39.1.2 (A:) Calcycli 10.4 72 0.0053 17.9 2.0 34 21-55 4-37 (92)
8 d1zkea1 a.30.6.1 (A:1-79) Hypo 9.6 1.4E+02 0.011 16.9 3.1 21 15-35 56-76 (79)
9 d1ivsa1 a.2.7.3 (A:797-862) Va 9.1 1.2E+02 0.0087 15.9 2.6 16 16-31 4-19 (66)
10 d1yuta1 a.39.1.2 (A:1-98) Calc 8.1 1.6E+02 0.012 16.4 3.1 36 20-55 8-45 (98)
No 1
>d1bjta_ e.11.1.1 (A:) DNA topoisomerase II, C-terminal fragment (residues 410-1202) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=31.38 E-value=8.3 Score=30.95 Aligned_cols=42 Identities=21% Similarity=0.189 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHhcccCCCCCCCCCHHHHHHHHHHHH
Q 047958 15 QQESVKLRQQIQMLQNSNKHLMRDSLSSLTVKELKQLENRHE 56 (103)
Q Consensus 15 ~~E~~~Lr~eie~Lq~~~R~l~GEdL~~Ls~~EL~~LE~qLe 56 (103)
..+..+|+++++.++..+..+..-...+|..+||..|++.++
T Consensus 708 ~eei~kL~~E~~~l~~Ei~~L~~~t~~~lW~~DL~~l~~~y~ 749 (760)
T d1bjta_ 708 KERYQKLLKQKQEKETELENLLKLSAKDIWNTDLKAFEVGYQ 749 (760)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 457788888888888888777776667788899999998776
No 2
>d2jn6a1 a.4.1.19 (A:1-89) Uncharacterized protein Cgl2762 {Corynebacterium glutamicum [TaxId: 1718]}
Probab=18.39 E-value=14 Score=21.09 Aligned_cols=21 Identities=10% Similarity=0.270 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHhccc
Q 047958 15 QQESVKLRQQIQMLQNSNKHL 35 (103)
Q Consensus 15 ~~E~~~Lr~eie~Lq~~~R~l 35 (103)
..++.+|+++++.|++..+++
T Consensus 65 ~~ei~~L~~En~~Lk~~~~~~ 85 (89)
T d2jn6a1 65 AEQIRQLKKENALQRARTRHP 85 (89)
T ss_dssp HHHHHHHHHCGGGGGGTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 567777777777777665543
No 3
>d1tuza_ a.39.1.7 (A:) Diacylglycerol kinase alpha, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.17 E-value=68 Score=19.05 Aligned_cols=21 Identities=19% Similarity=0.273 Sum_probs=19.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHH
Q 047958 36 MRDSLSSLTVKELKQLENRHE 56 (103)
Q Consensus 36 ~GEdL~~Ls~~EL~~LE~qLe 56 (103)
||..-+.|+.++|.+|-+.-.
T Consensus 1 Mg~~~s~l~p~~l~~L~~~T~ 21 (118)
T d1tuza_ 1 MAKERGLISPSDFAQLQKYME 21 (118)
T ss_dssp CCCCCSCSCHHHHHHHHHHHH
T ss_pred CCcccCCCCHHHHHHHHHHcC
Confidence 788889999999999998887
No 4
>d2paga1 d.369.1.1 (A:1-135) Hypothetical protein PSPTO5518 {Pseudomonas syringae pv. tomato [TaxId: 323]}
Probab=12.20 E-value=1.5e+02 Score=18.04 Aligned_cols=34 Identities=18% Similarity=0.218 Sum_probs=24.8
Q ss_pred HHHHHHHHHHhcccCCCCCCCCCHHHHHHHHHHHH
Q 047958 22 RQQIQMLQNSNKHLMRDSLSSLTVKELKQLENRHE 56 (103)
Q Consensus 22 r~eie~Lq~~~R~l~GEdL~~Ls~~EL~~LE~qLe 56 (103)
..-++.|+..... .+-.++.-+.+++..+|++|.
T Consensus 2 ~eiie~L~~~~~~-~p~~~e~pt~e~I~~~E~~lg 35 (135)
T d2paga1 2 EEVIEQLREANEP-VPVPLELPDEDQLVEIEEQLF 35 (135)
T ss_dssp HHHHHHHHHHCCC-CSSCCCCCCHHHHHHHHHHHT
T ss_pred hHHHHHHHHhccC-CCCCCCCCCHHHHHHHHHHHC
Confidence 3445666655444 455677779999999999999
No 5
>d1x4ta1 a.2.15.1 (A:7-86) Pre-mRNA-splicing factor ISY1 homolog {Mouse (Mus musculus) [TaxId: 10090]}
Probab=11.15 E-value=1.3e+02 Score=17.20 Aligned_cols=26 Identities=19% Similarity=0.050 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHhcccCCCCC
Q 047958 15 QQESVKLRQQIQMLQNSNKHLMRDSL 40 (103)
Q Consensus 15 ~~E~~~Lr~eie~Lq~~~R~l~GEdL 40 (103)
..|+.+|-++....+..++.|-|.|-
T Consensus 52 NDeINkL~reK~~WE~rI~eLGGpdY 77 (80)
T d1x4ta1 52 NDEINKLLREKGHWEVRIKELGGPDY 77 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 56788888888888888888888774
No 6
>d2oa5a1 d.362.1.1 (A:7-102) Uncharacterized protein BQLF2 {Murid herpesvirus 4 [TaxId: 33708]}
Probab=10.85 E-value=95 Score=18.48 Aligned_cols=35 Identities=20% Similarity=0.190 Sum_probs=21.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhccc--CCCCCCCCCHHH
Q 047958 13 NAQQESVKLRQQIQMLQNSNKHL--MRDSLSSLTVKE 47 (103)
Q Consensus 13 ~~~~E~~~Lr~eie~Lq~~~R~l--~GEdL~~Ls~~E 47 (103)
....++.+|+-++..|.+.+|+- .+.+=.-|+..+
T Consensus 6 eLaaeL~rL~~ENk~LKkkl~~~~~~~~~d~~LT~~q 42 (96)
T d2oa5a1 6 EMVKEVERLKLENKTLKQKVKSSGAVSSDDSILTAAK 42 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHTC---------CCBCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccCCHHH
Confidence 34688999999999999999874 223334466654
No 7
>d1a4pa_ a.39.1.2 (A:) Calcyclin (S100) {Human (Homo sapiens), P11 s100a10, calpactin [TaxId: 9606]}
Probab=10.39 E-value=72 Score=17.92 Aligned_cols=34 Identities=15% Similarity=0.292 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHhcccCCCCCCCCCHHHHHHHHHHH
Q 047958 21 LRQQIQMLQNSNKHLMRDSLSSLTVKELKQLENRH 55 (103)
Q Consensus 21 Lr~eie~Lq~~~R~l~GEdL~~Ls~~EL~~LE~qL 55 (103)
|.+.|+.|...-+++=+.+ +.++.+||+.+=+.+
T Consensus 4 lE~~ie~l~~~F~~yd~dd-G~is~~El~~~l~~~ 37 (92)
T d1a4pa_ 4 MEHAMETMMFTFHKFAGDK-GYLTKEDLRVLMEKE 37 (92)
T ss_dssp HHHHHHHHHHHHHHHHGGG-CSBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCC-CEEcHHHHHHHHHHh
Confidence 4456677777766666655 789999999886553
No 8
>d1zkea1 a.30.6.1 (A:1-79) Hypothetical protein HP1531 {Helicobacter pylori [TaxId: 210]}
Probab=9.56 E-value=1.4e+02 Score=16.93 Aligned_cols=21 Identities=29% Similarity=0.420 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHhccc
Q 047958 15 QQESVKLRQQIQMLQNSNKHL 35 (103)
Q Consensus 15 ~~E~~~Lr~eie~Lq~~~R~l 35 (103)
..|+++||..|+.|-+..|.+
T Consensus 56 d~ev~kLK~~IdaLNKiKke~ 76 (79)
T d1zkea1 56 SEEVERLKELINALNKIKKGL 76 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 579999999999998776654
No 9
>d1ivsa1 a.2.7.3 (A:797-862) Valyl-tRNA synthetase (ValRS) C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=9.06 E-value=1.2e+02 Score=15.91 Aligned_cols=16 Identities=6% Similarity=0.044 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 047958 16 QESVKLRQQIQMLQNS 31 (103)
Q Consensus 16 ~E~~~Lr~eie~Lq~~ 31 (103)
.|.++|.++++.++..
T Consensus 4 ~E~~RL~K~l~kl~~~ 19 (66)
T d1ivsa1 4 EWRRRQEKRLKELLAL 19 (66)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4555555555555543
No 10
>d1yuta1 a.39.1.2 (A:1-98) Calcyclin (S100) {Human (Homo sapiens), s100a13 [TaxId: 9606]}
Probab=8.08 E-value=1.6e+02 Score=16.44 Aligned_cols=36 Identities=25% Similarity=0.385 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHhcccCCCC--CCCCCHHHHHHHHHHH
Q 047958 20 KLRQQIQMLQNSNKHLMRDS--LSSLTVKELKQLENRH 55 (103)
Q Consensus 20 ~Lr~eie~Lq~~~R~l~GEd--L~~Ls~~EL~~LE~qL 55 (103)
.|.+.++.+...-+++-+.+ -+.+|..||+.+=+.+
T Consensus 8 ~lE~~i~~l~~vF~~y~d~dg~~g~is~~El~~~l~~~ 45 (98)
T d1yuta1 8 ELEESIETVVTTFFTFARQEGRKDSLSVNEFKELVTQQ 45 (98)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSSSSCBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcccCCCCCEEcHHHHHHHHHHh
Confidence 35566777777777765433 4789999999986554
Done!