BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047959
(478 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 128 NFCKKFKHLRVLNLGSAVLDQYPPGL-ENLFYLK 160
NF K HL +LNL S LD+ P G+ +NLF LK
Sbjct: 530 NFLKGLSHLHILNLESNGLDEIPVGVFKNLFELK 563
>pdb|2R1F|A Chain A, Crystal Structure Of Predicted Aminodeoxychorismate Lyase
From Escherichia Coli
pdb|2R1F|B Chain B, Crystal Structure Of Predicted Aminodeoxychorismate Lyase
From Escherichia Coli
Length = 270
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 49/116 (42%), Gaps = 28/116 (24%)
Query: 254 LRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQLSRMILSEYKFPPSLTQLSLSNT 313
LRI DLS++ +G + Q E LKL+ GK E +FP L L
Sbjct: 3 LRIEPDLSHFKAGTYRFTPQXTVREXLKLLESGK----------EAQFP-----LRLVEG 47
Query: 314 ELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLKSMLWLEEW 369
+ D + L E P++ +++ + K A V + L L++ W+E W
Sbjct: 48 XRLSDYLKQLREAPYI------KHTLSDDKYATVA-------QALELENPEWIEGW 90
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 61/125 (48%), Gaps = 12/125 (9%)
Query: 259 DLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQLSRMILSEYKFPPSLTQLSLSNTELVED 318
D Y S + LC + +E + L + + S + S ++ + +L L+ L +
Sbjct: 238 DDQYLTSATFEGLCDM-SVESINL----QKHRFSDLSSSTFRCFTRVQELDLTAAHL--N 290
Query: 319 PMPT-LEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLKSMLWLEEWTMGAGAMP 377
+P+ +E + L+ L L NS+ +L + +SFP L+ L++K + + +G +
Sbjct: 291 GLPSGIEGMNSLKKLVLNANSF--DQLCQINAASFPSLRDLYIKGN--MRKLDLGTRCLE 346
Query: 378 KLESL 382
KLE+L
Sbjct: 347 KLENL 351
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 23/36 (63%)
Query: 303 PSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNS 338
P L +LSL+N +L E P L L +L+ L L++NS
Sbjct: 148 PKLEKLSLANNDLTELPAGLLNGLENLDTLLLQENS 183
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 23/36 (63%)
Query: 303 PSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNS 338
P L +LSL+N +L E P L L +L+ L L++NS
Sbjct: 148 PKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENS 183
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 23/36 (63%)
Query: 303 PSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNS 338
P L +LSL+N +L E P L L +L+ L L++NS
Sbjct: 148 PKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENS 183
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 23/36 (63%)
Query: 303 PSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNS 338
P L +LSL+N +L E P L L +L+ L L++NS
Sbjct: 148 PKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENS 183
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 23/36 (63%)
Query: 303 PSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNS 338
P L +LSL+N +L E P L L +L+ L L++NS
Sbjct: 148 PKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENS 183
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 22/36 (61%)
Query: 303 PSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNS 338
P L +LSL+N L E P L L +L+ L L++NS
Sbjct: 148 PKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENS 183
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 28.5 bits (62), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 22/36 (61%)
Query: 303 PSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNS 338
P L +LSL+N L E P L L +L+ L L++NS
Sbjct: 148 PKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENS 183
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 22/36 (61%)
Query: 303 PSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNS 338
P L +LSL+N L E P L L +L+ L L++NS
Sbjct: 148 PKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENS 183
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 28.5 bits (62), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 22/36 (61%)
Query: 303 PSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNS 338
P L +LSL+N L E P L L +L+ L L++NS
Sbjct: 149 PKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENS 184
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 28.5 bits (62), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 22/36 (61%)
Query: 303 PSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNS 338
P L +LSL+N L E P L L +L+ L L++NS
Sbjct: 148 PKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENS 183
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,225,348
Number of Sequences: 62578
Number of extensions: 493123
Number of successful extensions: 942
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 925
Number of HSP's gapped (non-prelim): 22
length of query: 478
length of database: 14,973,337
effective HSP length: 103
effective length of query: 375
effective length of database: 8,527,803
effective search space: 3197926125
effective search space used: 3197926125
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)