Query 047959
Match_columns 478
No_of_seqs 333 out of 4550
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 04:57:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047959.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047959hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 9E-43 2E-47 364.9 13.6 204 3-211 401-650 (889)
2 PLN03210 Resistant to P. syrin 100.0 2.6E-35 5.6E-40 324.5 21.2 375 2-412 425-904 (1153)
3 PLN00113 leucine-rich repeat r 99.9 2.4E-26 5.2E-31 253.1 13.6 224 132-363 138-366 (968)
4 PLN00113 leucine-rich repeat r 99.9 3.1E-26 6.7E-31 252.2 14.4 283 117-410 91-389 (968)
5 KOG0444 Cytoskeletal regulator 99.9 6.4E-27 1.4E-31 224.7 -5.6 274 131-416 100-377 (1255)
6 KOG0444 Cytoskeletal regulator 99.9 9.5E-25 2.1E-29 209.8 -8.4 269 131-412 75-350 (1255)
7 KOG4194 Membrane glycoprotein 99.9 6.6E-23 1.4E-27 195.9 0.9 271 131-411 146-426 (873)
8 PLN03210 Resistant to P. syrin 99.8 6.8E-21 1.5E-25 210.6 14.1 270 127-412 551-836 (1153)
9 KOG4194 Membrane glycoprotein 99.8 4.3E-22 9.4E-27 190.3 1.1 279 127-412 95-403 (873)
10 KOG0472 Leucine-rich repeat pr 99.8 2E-22 4.4E-27 184.6 -12.0 262 135-412 46-308 (565)
11 KOG0618 Serine/threonine phosp 99.8 6.6E-21 1.4E-25 191.4 -6.4 169 239-412 254-487 (1081)
12 KOG0472 Leucine-rich repeat pr 99.8 1.6E-21 3.4E-26 178.8 -11.8 244 131-389 65-309 (565)
13 PRK15387 E3 ubiquitin-protein 99.7 3.2E-16 6.9E-21 162.2 13.0 233 135-412 223-456 (788)
14 PRK15370 E3 ubiquitin-protein 99.7 1.2E-16 2.6E-21 166.3 9.8 244 134-412 178-426 (754)
15 KOG0617 Ras suppressor protein 99.7 8.6E-19 1.9E-23 142.9 -5.7 159 131-293 30-190 (264)
16 PRK15387 E3 ubiquitin-protein 99.6 2.4E-15 5.2E-20 155.8 10.3 230 127-397 235-465 (788)
17 PRK15370 E3 ubiquitin-protein 99.6 1.8E-15 3.9E-20 157.6 8.0 224 134-389 199-427 (754)
18 KOG0618 Serine/threonine phosp 99.6 1.3E-17 2.7E-22 168.1 -8.1 245 133-390 240-489 (1081)
19 KOG0617 Ras suppressor protein 99.6 1.7E-17 3.7E-22 135.4 -6.4 159 148-316 25-186 (264)
20 cd00116 LRR_RI Leucine-rich re 99.5 1.1E-16 2.4E-21 154.0 -5.0 183 153-340 19-234 (319)
21 cd00116 LRR_RI Leucine-rich re 99.5 1.7E-15 3.7E-20 145.7 -4.6 231 126-362 15-287 (319)
22 KOG4237 Extracellular matrix p 99.4 2.6E-15 5.6E-20 138.1 -6.3 131 129-259 61-198 (498)
23 KOG4658 Apoptotic ATPase [Sign 99.4 1.6E-13 3.5E-18 145.3 4.3 229 131-371 542-788 (889)
24 KOG4237 Extracellular matrix p 99.3 1E-13 2.2E-18 127.7 -3.6 119 119-238 77-199 (498)
25 KOG4341 F-box protein containi 99.2 3.6E-13 7.8E-18 125.1 -4.8 300 135-444 139-462 (483)
26 KOG3207 Beta-tubulin folding c 99.1 1.4E-11 3.1E-16 115.2 -1.7 60 155-214 119-183 (505)
27 PF14580 LRR_9: Leucine-rich r 99.1 1.3E-10 2.9E-15 99.2 4.3 128 134-284 19-149 (175)
28 KOG1909 Ran GTPase-activating 99.0 1.2E-11 2.5E-16 112.8 -2.7 244 131-389 27-310 (382)
29 KOG1909 Ran GTPase-activating 99.0 1.5E-11 3.3E-16 112.0 -2.2 245 152-412 25-309 (382)
30 COG4886 Leucine-rich repeat (L 99.0 2.2E-10 4.7E-15 113.7 4.7 175 134-342 116-292 (394)
31 KOG0532 Leucine-rich repeat (L 99.0 1.2E-11 2.6E-16 119.3 -6.1 174 132-313 96-270 (722)
32 COG4886 Leucine-rich repeat (L 99.0 4.8E-10 1E-14 111.2 5.0 129 130-259 135-265 (394)
33 KOG3207 Beta-tubulin folding c 99.0 7.7E-11 1.7E-15 110.4 -0.7 238 169-412 110-365 (505)
34 KOG0532 Leucine-rich repeat (L 99.0 2.5E-11 5.4E-16 117.1 -4.1 195 131-337 72-270 (722)
35 KOG1259 Nischarin, modulator o 98.8 6.8E-10 1.5E-14 99.3 0.9 218 156-390 181-412 (490)
36 KOG2120 SCF ubiquitin ligase, 98.8 1.6E-11 3.5E-16 109.4 -10.1 188 227-421 185-384 (419)
37 KOG1259 Nischarin, modulator o 98.8 7.2E-10 1.6E-14 99.1 -0.5 225 131-369 179-414 (490)
38 KOG4341 F-box protein containi 98.7 1.2E-10 2.6E-15 108.6 -7.3 259 158-420 139-420 (483)
39 PLN03150 hypothetical protein; 98.6 6.6E-08 1.4E-12 100.7 8.2 89 136-224 420-511 (623)
40 KOG2120 SCF ubiquitin ligase, 98.6 3.1E-10 6.7E-15 101.3 -8.4 200 181-405 186-391 (419)
41 PF14580 LRR_9: Leucine-rich r 98.6 3.2E-08 6.9E-13 84.7 3.6 106 131-238 39-151 (175)
42 PF13855 LRR_8: Leucine rich r 98.5 9.2E-08 2E-12 67.1 3.5 57 135-191 2-60 (61)
43 PLN03150 hypothetical protein; 98.4 5.6E-07 1.2E-11 93.9 7.8 101 182-284 420-524 (623)
44 PF13855 LRR_8: Leucine rich r 98.4 2.9E-07 6.2E-12 64.5 3.0 58 157-214 1-60 (61)
45 KOG0531 Protein phosphatase 1, 98.3 4.4E-08 9.6E-13 97.5 -2.4 242 132-391 70-319 (414)
46 KOG0531 Protein phosphatase 1, 98.3 4.7E-08 1E-12 97.3 -3.1 220 130-363 91-315 (414)
47 KOG2982 Uncharacterized conser 98.2 1E-07 2.3E-12 85.5 -2.0 84 326-411 198-289 (418)
48 KOG2982 Uncharacterized conser 98.2 2E-07 4.3E-12 83.7 -1.3 85 129-213 66-156 (418)
49 PF12799 LRR_4: Leucine Rich r 98.2 2.2E-06 4.8E-11 55.1 3.9 39 158-196 2-40 (44)
50 COG5238 RNA1 Ran GTPase-activa 98.2 2.3E-07 5E-12 82.3 -1.5 247 132-389 28-315 (388)
51 KOG3665 ZYG-1-like serine/thre 98.1 5.6E-07 1.2E-11 93.7 -0.1 124 134-259 122-260 (699)
52 COG5238 RNA1 Ran GTPase-activa 98.1 7.2E-07 1.6E-11 79.2 -0.0 222 131-369 55-318 (388)
53 PF12799 LRR_4: Leucine Rich r 98.1 3.7E-06 8E-11 54.0 3.0 40 134-173 1-40 (44)
54 KOG1859 Leucine-rich repeat pr 97.9 1.7E-07 3.7E-12 93.6 -7.4 125 228-364 165-290 (1096)
55 PRK15386 type III secretion pr 97.9 3E-05 6.4E-10 74.8 7.4 69 132-211 50-120 (426)
56 KOG1859 Leucine-rich repeat pr 97.8 4.4E-07 9.5E-12 90.8 -7.2 174 131-316 106-292 (1096)
57 PRK15386 type III secretion pr 97.8 6.1E-05 1.3E-09 72.7 7.5 32 353-387 156-187 (426)
58 KOG3665 ZYG-1-like serine/thre 97.7 1.7E-05 3.6E-10 82.9 2.9 100 158-259 123-230 (699)
59 KOG1644 U2-associated snRNP A' 97.6 8.8E-05 1.9E-09 63.4 5.2 60 135-195 43-103 (233)
60 KOG1644 U2-associated snRNP A' 97.6 6.9E-05 1.5E-09 64.0 3.6 121 137-259 22-150 (233)
61 KOG1947 Leucine rich repeat pr 97.4 8.2E-06 1.8E-10 83.2 -4.3 110 179-288 187-308 (482)
62 KOG4579 Leucine-rich repeat (L 97.4 4.6E-05 9.9E-10 60.9 0.6 75 136-210 55-130 (177)
63 KOG1947 Leucine rich repeat pr 97.4 9.8E-06 2.1E-10 82.6 -4.6 234 156-414 187-440 (482)
64 KOG4579 Leucine-rich repeat (L 97.3 2.2E-05 4.7E-10 62.7 -2.5 73 127-199 70-142 (177)
65 KOG2739 Leucine-rich acidic nu 96.8 0.0007 1.5E-08 60.4 2.6 106 131-238 40-154 (260)
66 KOG2739 Leucine-rich acidic nu 96.6 0.00061 1.3E-08 60.8 0.3 63 153-216 39-104 (260)
67 KOG2123 Uncharacterized conser 96.4 0.00012 2.7E-09 65.6 -4.9 101 134-236 19-126 (388)
68 KOG2123 Uncharacterized conser 96.3 0.00011 2.4E-09 65.9 -5.9 100 302-408 18-124 (388)
69 PF13306 LRR_5: Leucine rich r 95.9 0.018 3.9E-07 46.8 5.5 103 128-235 6-111 (129)
70 PF00560 LRR_1: Leucine Rich R 95.8 0.0036 7.9E-08 33.3 0.7 16 159-174 2-17 (22)
71 PF00560 LRR_1: Leucine Rich R 95.5 0.0044 9.6E-08 33.0 0.3 21 181-201 1-21 (22)
72 KOG3864 Uncharacterized conser 94.4 0.0023 4.9E-08 55.0 -4.1 64 349-412 121-187 (221)
73 PF13504 LRR_7: Leucine rich r 94.1 0.032 6.9E-07 27.5 1.2 15 158-172 2-16 (17)
74 PF13504 LRR_7: Leucine rich r 94.0 0.039 8.5E-07 27.2 1.5 16 181-196 2-17 (17)
75 KOG3864 Uncharacterized conser 93.1 0.0052 1.1E-07 52.9 -4.2 88 303-391 101-190 (221)
76 PF13306 LRR_5: Leucine rich r 92.7 0.26 5.7E-06 39.8 5.5 82 126-211 27-111 (129)
77 KOG0473 Leucine-rich repeat pr 92.7 0.0032 6.9E-08 55.3 -6.2 80 132-211 40-119 (326)
78 smart00369 LRR_TYP Leucine-ric 91.7 0.2 4.3E-06 27.7 2.4 20 180-199 2-21 (26)
79 smart00370 LRR Leucine-rich re 91.7 0.2 4.3E-06 27.7 2.4 20 180-199 2-21 (26)
80 KOG0473 Leucine-rich repeat pr 89.7 0.01 2.2E-07 52.2 -6.0 84 153-237 38-121 (326)
81 smart00369 LRR_TYP Leucine-ric 89.6 0.32 7E-06 26.8 2.1 21 156-176 1-21 (26)
82 smart00370 LRR Leucine-rich re 89.6 0.32 7E-06 26.8 2.1 21 156-176 1-21 (26)
83 KOG4308 LRR-containing protein 87.4 0.0023 5.1E-08 64.2 -13.2 175 136-315 89-302 (478)
84 KOG4308 LRR-containing protein 78.1 0.026 5.5E-07 56.8 -10.1 284 129-415 110-446 (478)
85 smart00367 LRR_CC Leucine-rich 75.8 1.3 2.7E-05 24.5 0.6 14 377-390 2-15 (26)
86 smart00364 LRR_BAC Leucine-ric 75.3 1.8 3.9E-05 24.0 1.1 17 158-174 3-19 (26)
87 smart00365 LRR_SD22 Leucine-ri 72.3 3.3 7.3E-05 22.9 1.8 16 180-195 2-17 (26)
88 PF13516 LRR_6: Leucine Rich r 63.7 4.6 9.9E-05 21.6 1.2 14 180-193 2-15 (24)
89 smart00368 LRR_RI Leucine rich 50.2 11 0.00023 21.2 1.3 12 135-146 3-14 (28)
90 PF14162 YozD: YozD-like prote 48.3 31 0.00067 22.5 3.2 27 41-67 23-51 (57)
91 KOG3763 mRNA export factor TAP 35.6 11 0.00024 38.0 -0.3 64 302-367 217-284 (585)
92 KOG3763 mRNA export factor TAP 31.7 33 0.00071 34.9 2.2 36 178-213 216-254 (585)
93 PRK04841 transcriptional regul 30.9 1.3E+02 0.0027 33.6 7.0 73 7-94 260-332 (903)
94 cd04441 DEP_2_DEP6 DEP (Dishev 26.0 1.8E+02 0.0039 21.6 4.8 41 30-72 33-73 (85)
95 PF12802 MarR_2: MarR family; 23.4 2.3E+02 0.005 18.8 7.2 60 9-76 2-61 (62)
96 cd04443 DEP_GPR155 DEP (Dishev 23.1 2.4E+02 0.0052 20.8 5.0 40 30-71 31-70 (83)
97 PF00610 DEP: Domain found in 23.1 2.5E+02 0.0055 19.7 5.1 41 30-72 18-60 (74)
98 PF15385 SARG: Specifically an 22.9 44 0.00095 33.8 1.3 15 6-20 7-21 (497)
99 COG3432 Predicted transcriptio 22.7 3.3E+02 0.0071 20.7 5.6 41 47-90 42-82 (95)
100 cd04440 DEP_2_P-Rex DEP (Dishe 22.2 2.3E+02 0.005 21.5 4.7 40 31-72 39-78 (93)
101 PF13463 HTH_27: Winged helix 21.0 2E+02 0.0044 19.5 4.2 48 28-82 17-64 (68)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=9e-43 Score=364.85 Aligned_cols=204 Identities=26% Similarity=0.442 Sum_probs=177.1
Q ss_pred eecccCCChhhHHHHHhHhcccCCCceechhHHHHHHHHcCCCC-----CChHHHHHHHHHHHHHccceeeeecCCCCcE
Q 047959 3 QIFSVMELPFHLKVCCIYLCAFPPSIEISTEQLYQLWVAEGFIP-----YNSEETAKHYLKELIHRGFIQVSKRRSGGTI 77 (478)
Q Consensus 3 ~klSY~~L~~~~k~cFl~~a~Fp~~~~i~~~~Li~~w~~~g~~~-----~~~~~~~~~~~~~L~~~~ll~~~~~~~~g~~ 77 (478)
+++|||.||+++|.||+|||+|||||+|+++.||.+|+||||+. ..+++.|.+|+++|+++++++..... |+.
T Consensus 401 LklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~--~~~ 478 (889)
T KOG4658|consen 401 LKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDE--GRK 478 (889)
T ss_pred hhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccc--cce
Confidence 68999999988999999999999999999999999999999997 78899999999999999999987754 777
Q ss_pred eEEEeCHHHHHHHHHHhh-----hcCcEeeccCCC--------CccC-ceec--------------CCCCCeeee---c-
Q 047959 78 KACYVPSIAYTSLALMAR-----KTEFVSSIFSEE--------ESLS-NVKR--------------SKSDHLALI---H- 125 (478)
Q Consensus 78 ~~~~mhdli~dl~~~~~~-----~e~~~~~~~~~~--------~~~~-~~r~--------------~~~~~lr~l---~- 125 (478)
..|+|||+|||||.++|+ +|+.+. ..+ ...| .+|| ..+++++|| +
T Consensus 479 ~~~kmHDvvRe~al~ias~~~~~~e~~iv---~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n 555 (889)
T KOG4658|consen 479 ETVKMHDVVREMALWIASDFGKQEENQIV---SDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRN 555 (889)
T ss_pred eEEEeeHHHHHHHHHHhccccccccceEE---ECCcCccccccccchhheeEEEEeccchhhccCCCCCCccceEEEeec
Confidence 899999999999999999 666433 322 1112 4455 667789888 2
Q ss_pred -------CccccCCCCeEeEEEecCCC-CCcCCccCCCCCCCceEeecCCCCCccchhhhCCCCCcEEeCCCC-cCcccc
Q 047959 126 -------CENFCKKFKHLRVLNLGSAV-LDQYPPGLENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSS-YIDHSP 196 (478)
Q Consensus 126 -------~~~~~~~~~~L~~L~L~~~~-l~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~-~l~~lp 196 (478)
..+||..++.||+|||++|. +..+|++|+.+-+||||+++++.+..+|..+++|++|.+|++..+ .+..+|
T Consensus 556 ~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~ 635 (889)
T KOG4658|consen 556 SDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIP 635 (889)
T ss_pred chhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheecccccccccccc
Confidence 35678999999999999887 779999999999999999999999999999999999999999999 666666
Q ss_pred hhhhccccCcEEEee
Q 047959 197 EDIWMMQKLMHLNFG 211 (478)
Q Consensus 197 ~~i~~l~~L~~L~l~ 211 (478)
.....|++||+|.+.
T Consensus 636 ~i~~~L~~Lr~L~l~ 650 (889)
T KOG4658|consen 636 GILLELQSLRVLRLP 650 (889)
T ss_pred chhhhcccccEEEee
Confidence 666679999999994
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=2.6e-35 Score=324.53 Aligned_cols=375 Identities=18% Similarity=0.154 Sum_probs=213.5
Q ss_pred ceecccCCChh-hHHHHHhHhcccCCCceechhHHHHHHHHcCCCCCChHHHHHHHHHHHHHccceeeeecCCCCcEeEE
Q 047959 2 RQIFSVMELPF-HLKVCCIYLCAFPPSIEISTEQLYQLWVAEGFIPYNSEETAKHYLKELIHRGFIQVSKRRSGGTIKAC 80 (478)
Q Consensus 2 ~~klSY~~L~~-~~k~cFl~~a~Fp~~~~i~~~~Li~~w~~~g~~~~~~~~~~~~~~~~L~~~~ll~~~~~~~~g~~~~~ 80 (478)
.+|+|||+|++ +.|.||+|||+||+++.+ +.+..|.+.+.+. ++..++.|+++||++... ..+
T Consensus 425 ~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~---~~v~~~l~~~~~~------~~~~l~~L~~ksLi~~~~-------~~~ 488 (1153)
T PLN03210 425 TLRVSYDGLNNKKDKAIFRHIACLFNGEKV---NDIKLLLANSDLD------VNIGLKNLVDKSLIHVRE-------DIV 488 (1153)
T ss_pred HHHHhhhccCccchhhhhheehhhcCCCCH---HHHHHHHHhcCCC------chhChHHHHhcCCEEEcC-------CeE
Confidence 37899999987 599999999999998654 3466777776552 444599999999998743 249
Q ss_pred EeCHHHHHHHHHHhhhcCcEeeccCCCCccC----------------ceec------------------CCCCCeeeec-
Q 047959 81 YVPSIAYTSLALMARKTEFVSSIFSEEESLS----------------NVKR------------------SKSDHLALIH- 125 (478)
Q Consensus 81 ~mhdli~dl~~~~~~~e~~~~~~~~~~~~~~----------------~~r~------------------~~~~~lr~l~- 125 (478)
+|||++|+||+.+++++.. ..++....| +++. ..+++|+.|.
T Consensus 489 ~MHdLl~~~~r~i~~~~~~---~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~ 565 (1153)
T PLN03210 489 EMHSLLQEMGKEIVRAQSN---EPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKF 565 (1153)
T ss_pred EhhhHHHHHHHHHHHhhcC---CCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEE
Confidence 9999999999999987631 011110011 1111 3445555441
Q ss_pred ----C-----------ccccCCCCeEeEEEecCCCCCcCCccCCCCCCCceEeecCCCCCccchhhhCCCCCcEEeCCCC
Q 047959 126 ----C-----------ENFCKKFKHLRVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSS 190 (478)
Q Consensus 126 ----~-----------~~~~~~~~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~ 190 (478)
+ +.+..-...||.|.+.++.++.+|..+ ...+|+.|++.++.+..+|..+..+++|++|+++++
T Consensus 566 ~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~ 644 (1153)
T PLN03210 566 YTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGS 644 (1153)
T ss_pred ecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccccccccccCCCCCEEECCCC
Confidence 0 111111234566666665555555554 345566666666555555555555566666666555
Q ss_pred -cCcccchhhhccccCcEEEeeCCCCCCCCCCCCCCCCCCcEeCcccCC--CCCccccCCCCCCcEEEEEecCCcchhhH
Q 047959 191 -YIDHSPEDIWMMQKLMHLNFGSITLPAPPKNNSSPLKNLIFISALHPS--SCTPDILGRLPNVQTLRISGDLSYYHSGV 267 (478)
Q Consensus 191 -~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~l 267 (478)
.+..+|. +..+++|+.|++++|.....+|..++.+++|+.|++.+|. ...|..+ ++++|+.|++++|. ....+
T Consensus 645 ~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~--~L~~~ 720 (1153)
T PLN03210 645 KNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCS--RLKSF 720 (1153)
T ss_pred CCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCC--Ccccc
Confidence 4555553 4555566666665444444555555555566666655554 3333332 45555555555542 11111
Q ss_pred HHhccCCCCCCEEEEEecCcccccCcccccc------------------------------ccCCCCceEEEEEeecCCC
Q 047959 268 SKSLCQLHKLECLKLVNEGKMRQLSRMILSE------------------------------YKFPPSLTQLSLSNTELVE 317 (478)
Q Consensus 268 ~~~l~~~~~L~~L~l~~~~~l~~~p~~~~~~------------------------------~~~~~~L~~L~l~~~~~~~ 317 (478)
+. ..++|+.|++++ +.+..+|. .+ .. +++|+.|++++|....
T Consensus 721 p~---~~~nL~~L~L~~-n~i~~lP~---~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~-~~sL~~L~Ls~n~~l~ 792 (1153)
T PLN03210 721 PD---ISTNISWLDLDE-TAIEEFPS---NLRLENLDELILCEMKSEKLWERVQPLTPLMTML-SPSLTRLFLSDIPSLV 792 (1153)
T ss_pred cc---ccCCcCeeecCC-Cccccccc---cccccccccccccccchhhccccccccchhhhhc-cccchheeCCCCCCcc
Confidence 11 112333333333 22222222 10 01 2344555555554334
Q ss_pred CCcCcccCCCCCCeEEEeeCcccCceeEEeCCCCCc---------------------ccceeEEecCCCCCceeeCCCcc
Q 047959 318 DPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFP---------------------QLKILHLKSMLWLEEWTMGAGAM 376 (478)
Q Consensus 318 ~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~---------------------~L~~L~L~~~~~l~~l~~~~~~~ 376 (478)
..+..++++++|+.|+|++|......+. ...++ +|+.|+|++ +.++.+|...+.+
T Consensus 793 ~lP~si~~L~~L~~L~Ls~C~~L~~LP~---~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~-n~i~~iP~si~~l 868 (1153)
T PLN03210 793 ELPSSIQNLHKLEHLEIENCINLETLPT---GINLESLESLDLSGCSRLRTFPDISTNISDLNLSR-TGIEEVPWWIEKF 868 (1153)
T ss_pred ccChhhhCCCCCCEEECCCCCCcCeeCC---CCCccccCEEECCCCCccccccccccccCEeECCC-CCCccChHHHhcC
Confidence 4444455555555555554432222111 11233 455555555 3455666666778
Q ss_pred cccceeEEecCCCCCCCccccCCCCCCCEEEEecCc
Q 047959 377 PKLESLILNPCAYLRKLPEEQWCIKSLCKLELHWPQ 412 (478)
Q Consensus 377 ~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 412 (478)
++|+.|++++|+.++.+|..+..+++|+.+++++|+
T Consensus 869 ~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 869 SNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred CCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 899999999999999988888889999999999987
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.93 E-value=2.4e-26 Score=253.08 Aligned_cols=224 Identities=22% Similarity=0.292 Sum_probs=130.9
Q ss_pred CCCeEeEEEecCCCCC-cCCccCCCCCCCceEeecCCCCC-ccchhhhCCCCCcEEeCCCCcC-cccchhhhccccCcEE
Q 047959 132 KFKHLRVLNLGSAVLD-QYPPGLENLFYLKYLKLNIPSLK-CLPSLLCTLLNLQTLEMPSSYI-DHSPEDIWMMQKLMHL 208 (478)
Q Consensus 132 ~~~~L~~L~L~~~~l~-~lp~~~~~l~~L~~L~l~~~~i~-~lp~~~~~l~~L~~L~l~~~~l-~~lp~~i~~l~~L~~L 208 (478)
.+++|++|+|++|.++ .+|..++.+++|++|++++|.+. .+|..++++++|++|++++|.+ ..+|..++++++|++|
T Consensus 138 ~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 217 (968)
T PLN00113 138 SIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWI 217 (968)
T ss_pred ccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEE
Confidence 4555556666665554 55555666666666666666654 5566666666666666666643 3456666666666666
Q ss_pred EeeCCCCCCCCCCCCCCCCCCcEeCcccCC--CCCccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecC
Q 047959 209 NFGSITLPAPPKNNSSPLKNLIFISALHPS--SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEG 286 (478)
Q Consensus 209 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~ 286 (478)
++++|.....+|..++++++|++|++.+|. ...+..++++++|+.|++++| ...+.++..+..+++|+.|+++++.
T Consensus 218 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n--~l~~~~p~~l~~l~~L~~L~Ls~n~ 295 (968)
T PLN00113 218 YLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQN--KLSGPIPPSIFSLQKLISLDLSDNS 295 (968)
T ss_pred ECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCC--eeeccCchhHhhccCcCEEECcCCe
Confidence 666665555666666666666666666655 445555666666666666665 3444455555566666666666522
Q ss_pred cccccCccccccccCCCCceEEEEEeecCCCCCcCcccCCCCCCeEEEeeCcccCceeEEeCCCCCcccceeEEecC
Q 047959 287 KMRQLSRMILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLKSM 363 (478)
Q Consensus 287 ~l~~~p~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~ 363 (478)
....+|. ++.. +++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+.. +..+++|+.|+++++
T Consensus 296 l~~~~p~---~~~~-l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~--l~~~~~L~~L~Ls~n 366 (968)
T PLN00113 296 LSGEIPE---LVIQ-LQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKN--LGKHNNLTVLDLSTN 366 (968)
T ss_pred eccCCCh---hHcC-CCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChH--HhCCCCCcEEECCCC
Confidence 2224555 5555 666666666666655555555566666666666666555433322 344555555555543
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.93 E-value=3.1e-26 Score=252.20 Aligned_cols=283 Identities=22% Similarity=0.272 Sum_probs=218.7
Q ss_pred CCCCeeeec----------CccccCCCCeEeEEEecCCCCC-cCCccCCCCCCCceEeecCCCCC-ccchhhhCCCCCcE
Q 047959 117 KSDHLALIH----------CENFCKKFKHLRVLNLGSAVLD-QYPPGLENLFYLKYLKLNIPSLK-CLPSLLCTLLNLQT 184 (478)
Q Consensus 117 ~~~~lr~l~----------~~~~~~~~~~L~~L~L~~~~l~-~lp~~~~~l~~L~~L~l~~~~i~-~lp~~~~~l~~L~~ 184 (478)
.+++|+.|+ +..++..+++|++|+|++|.++ .+|. +.+++|++|++++|.+. .+|..++++++|++
T Consensus 91 ~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~ 168 (968)
T PLN00113 91 RLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKV 168 (968)
T ss_pred CCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCE
Confidence 466777772 2334457888888888888876 5553 46778888888888887 78888889999999
Q ss_pred EeCCCCcC-cccchhhhccccCcEEEeeCCCCCCCCCCCCCCCCCCcEeCcccCC--CCCccccCCCCCCcEEEEEecCC
Q 047959 185 LEMPSSYI-DHSPEDIWMMQKLMHLNFGSITLPAPPKNNSSPLKNLIFISALHPS--SCTPDILGRLPNVQTLRISGDLS 261 (478)
Q Consensus 185 L~l~~~~l-~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~ 261 (478)
|++++|.+ ..+|..++++++|++|++++|.+...+|..++++++|++|++..+. ...+..++++++|+.|++++|
T Consensus 169 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n-- 246 (968)
T PLN00113 169 LDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYN-- 246 (968)
T ss_pred EECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCc--
Confidence 99999855 5778888899999999998888877888888889999999988887 567788889999999999888
Q ss_pred cchhhHHHhccCCCCCCEEEEEecCcc-cccCccccccccCCCCceEEEEEeecCCCCCcCcccCCCCCCeEEEeeCccc
Q 047959 262 YYHSGVSKSLCQLHKLECLKLVNEGKM-RQLSRMILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYL 340 (478)
Q Consensus 262 ~~~~~l~~~l~~~~~L~~L~l~~~~~l-~~~p~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~ 340 (478)
...+.++..+..+++|+.|++++ +.+ ..+|. .+.. +++|+.|++++|.+.+..+..+.++++|+.|++++|.+.
T Consensus 247 ~l~~~~p~~l~~l~~L~~L~L~~-n~l~~~~p~---~l~~-l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~ 321 (968)
T PLN00113 247 NLTGPIPSSLGNLKNLQYLFLYQ-NKLSGPIPP---SIFS-LQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFT 321 (968)
T ss_pred eeccccChhHhCCCCCCEEECcC-CeeeccCch---hHhh-ccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccC
Confidence 56667788888899999999987 444 46777 7787 899999999999888777888888999999999988887
Q ss_pred CceeEEeCCCCCcccceeEEecCCCCCceeeCCCcccccceeEEecCCCCCCCccccCCCCCCCEEEEec
Q 047959 341 ERKLACVGCSSFPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEEQWCIKSLCKLELHW 410 (478)
Q Consensus 341 ~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~ 410 (478)
+..+.. +..+++|+.|++++|.-...+|...+.+++|+.|++++|.....+|..+..+++|+.|++.+
T Consensus 322 ~~~~~~--~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~ 389 (968)
T PLN00113 322 GKIPVA--LTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFS 389 (968)
T ss_pred CcCChh--HhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcC
Confidence 665544 67789999999998654446666667777777777777765444444444444444444443
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.91 E-value=6.4e-27 Score=224.66 Aligned_cols=274 Identities=22% Similarity=0.251 Sum_probs=243.7
Q ss_pred CCCCeEeEEEecCCCCCcCCccCCCCCCCceEeecCCCCCccchh-hhCCCCCcEEeCCCCcCcccchhhhccccCcEEE
Q 047959 131 KKFKHLRVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLPSL-LCTLLNLQTLEMPSSYIDHSPEDIWMMQKLMHLN 209 (478)
Q Consensus 131 ~~~~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~ 209 (478)
-+++.|.+|||++|.+++.|..+...+++-+|+|++|+|.++|.+ +-+|..|-.||+++|++..+|+.+..+..|+.|+
T Consensus 100 F~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~ 179 (1255)
T KOG0444|consen 100 FRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLK 179 (1255)
T ss_pred cccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhh
Confidence 467889999999999999999999999999999999999999976 4589999999999999999999999999999999
Q ss_pred eeCCCCCCCCCCCCCCCCCCcEeCcccCC---CCCccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecC
Q 047959 210 FGSITLPAPPKNNSSPLKNLIFISALHPS---SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEG 286 (478)
Q Consensus 210 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~---~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~ 286 (478)
+++|.+...--..+..+++|++|.+++.. ..+|..+..+.||+.++++.| ....+|..+.++++|+.|++++ +
T Consensus 180 Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N---~Lp~vPecly~l~~LrrLNLS~-N 255 (1255)
T KOG0444|consen 180 LSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSEN---NLPIVPECLYKLRNLRRLNLSG-N 255 (1255)
T ss_pred cCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhcccccc---CCCcchHHHhhhhhhheeccCc-C
Confidence 98886654333456678999999999887 788999999999999999997 6667889999999999999998 9
Q ss_pred cccccCccccccccCCCCceEEEEEeecCCCCCcCcccCCCCCCeEEEeeCcccCceeEEeCCCCCcccceeEEecCCCC
Q 047959 287 KMRQLSRMILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLKSMLWL 366 (478)
Q Consensus 287 ~l~~~p~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l 366 (478)
.++.+.. ..+. ..+|+.|+++.|+++ ..|..+.++++|+.|.+.+|+++-+.++.. ++.+.+|+.+...+ +.+
T Consensus 256 ~iteL~~---~~~~-W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSG-IGKL~~Levf~aan-N~L 328 (1255)
T KOG0444|consen 256 KITELNM---TEGE-WENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSG-IGKLIQLEVFHAAN-NKL 328 (1255)
T ss_pred ceeeeec---cHHH-Hhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccc-hhhhhhhHHHHhhc-ccc
Confidence 9998887 7788 899999999999974 567889999999999999999876666544 89999999999998 689
Q ss_pred CceeeCCCcccccceeEEecCCCCCCCccccCCCCCCCEEEEecCcHHHH
Q 047959 367 EEWTMGAGAMPKLESLILNPCAYLRKLPEEQWCIKSLCKLELHWPQPELR 416 (478)
Q Consensus 367 ~~l~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~~~~ 416 (478)
+-+|.....++.|+.|.+..|. +-.+|+++.-++.|+.|++..+|+..+
T Consensus 329 ElVPEglcRC~kL~kL~L~~Nr-LiTLPeaIHlL~~l~vLDlreNpnLVM 377 (1255)
T KOG0444|consen 329 ELVPEGLCRCVKLQKLKLDHNR-LITLPEAIHLLPDLKVLDLRENPNLVM 377 (1255)
T ss_pred ccCchhhhhhHHHHHhcccccc-eeechhhhhhcCCcceeeccCCcCccC
Confidence 9999999999999999999775 567899999999999999999984443
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.86 E-value=9.5e-25 Score=209.85 Aligned_cols=269 Identities=21% Similarity=0.225 Sum_probs=233.1
Q ss_pred CCCCeEeEEEecCCCCC--cCCccCCCCCCCceEeecCCCCCccchhhhCCCCCcEEeCCCCcCcccchhh-hccccCcE
Q 047959 131 KKFKHLRVLNLGSAVLD--QYPPGLENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSPEDI-WMMQKLMH 207 (478)
Q Consensus 131 ~~~~~L~~L~L~~~~l~--~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i-~~l~~L~~ 207 (478)
+.++.||.++++.|++. .+|..+.++..|..|+|++|++++.|..+..-+++-+|++++|+|..+|..+ .+++.|-.
T Consensus 75 s~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLf 154 (1255)
T KOG0444|consen 75 SDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLF 154 (1255)
T ss_pred ccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhh
Confidence 67788999999999977 8999999999999999999999999999999999999999999999999664 58999999
Q ss_pred EEeeCCCCCCCCCCCCCCCCCCcEeCcccCC--CCCccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEec
Q 047959 208 LNFGSITLPAPPKNNSSPLKNLIFISALHPS--SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNE 285 (478)
Q Consensus 208 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~ 285 (478)
||+++|.+ ..+|+.+..+.+||+|.++++. ......+..+++|+.|.+++.. .....+|.++..+.+|..++++.
T Consensus 155 LDLS~NrL-e~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~Tq-RTl~N~Ptsld~l~NL~dvDlS~- 231 (1255)
T KOG0444|consen 155 LDLSNNRL-EMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQ-RTLDNIPTSLDDLHNLRDVDLSE- 231 (1255)
T ss_pred hccccchh-hhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhccccc-chhhcCCCchhhhhhhhhccccc-
Confidence 99977654 4688899999999999999987 5556667788899999999875 56677889999999999999996
Q ss_pred CcccccCccccccccCCCCceEEEEEeecCCCCCcCcccCCCCCCeEEEeeCcccCceeEEeCCCCCcccceeEEecCCC
Q 047959 286 GKMRQLSRMILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLKSMLW 365 (478)
Q Consensus 286 ~~l~~~p~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~ 365 (478)
+.+..+|. .+.+ +++|+.|+|++|.++. .....+...+|++|+++.|.++... .. +..+++|+.|.+.+ +.
T Consensus 232 N~Lp~vPe---cly~-l~~LrrLNLS~N~ite-L~~~~~~W~~lEtLNlSrNQLt~LP-~a--vcKL~kL~kLy~n~-Nk 302 (1255)
T KOG0444|consen 232 NNLPIVPE---CLYK-LRNLRRLNLSGNKITE-LNMTEGEWENLETLNLSRNQLTVLP-DA--VCKLTKLTKLYANN-NK 302 (1255)
T ss_pred cCCCcchH---HHhh-hhhhheeccCcCceee-eeccHHHHhhhhhhccccchhccch-HH--HhhhHHHHHHHhcc-Cc
Confidence 99999999 8888 9999999999999864 3335567789999999999987543 22 57789999999987 45
Q ss_pred CC--ceeeCCCcccccceeEEecCCCCCCCccccCCCCCCCEEEEecCc
Q 047959 366 LE--EWTMGAGAMPKLESLILNPCAYLRKLPEEQWCIKSLCKLELHWPQ 412 (478)
Q Consensus 366 l~--~l~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 412 (478)
++ .+|..++.+..|+.+...+| .++-+|+++.+|+.|+.|.++.+.
T Consensus 303 L~FeGiPSGIGKL~~Levf~aanN-~LElVPEglcRC~kL~kL~L~~Nr 350 (1255)
T KOG0444|consen 303 LTFEGIPSGIGKLIQLEVFHAANN-KLELVPEGLCRCVKLQKLKLDHNR 350 (1255)
T ss_pred ccccCCccchhhhhhhHHHHhhcc-ccccCchhhhhhHHHHHhcccccc
Confidence 54 89999999999999999875 689999999999999999998764
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.85 E-value=6.6e-23 Score=195.89 Aligned_cols=271 Identities=20% Similarity=0.235 Sum_probs=160.3
Q ss_pred CCCCeEeEEEecCCCCCcCCcc-CCCCCCCceEeecCCCCCccc-hhhhCCCCCcEEeCCCCcCcccchhhh-ccccCcE
Q 047959 131 KKFKHLRVLNLGSAVLDQYPPG-LENLFYLKYLKLNIPSLKCLP-SLLCTLLNLQTLEMPSSYIDHSPEDIW-MMQKLMH 207 (478)
Q Consensus 131 ~~~~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~l~~lp~~i~-~l~~L~~ 207 (478)
+-++.||+|||+.|.++.+|.. +..-.++++|+|++|.|+.+. ..|..+.+|.+|.|+.|.+..+|.... +|++|+.
T Consensus 146 ~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~ 225 (873)
T KOG4194|consen 146 SALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLES 225 (873)
T ss_pred HhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhh
Confidence 5567788888888888877765 666678888888888888654 357778888888888888888886544 4888888
Q ss_pred EEeeCCCCCCCCCCCCCCCCCCcEeCcccCC--CCCccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEec
Q 047959 208 LNFGSITLPAPPKNNSSPLKNLIFISALHPS--SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNE 285 (478)
Q Consensus 208 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~ 285 (478)
|++.+|.+...--..|..+.+|+.|.+..+. .-.-..|-.|.++++|++..| .....-...+.+++.|+.|+++.
T Consensus 226 LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N--~l~~vn~g~lfgLt~L~~L~lS~- 302 (873)
T KOG4194|consen 226 LDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETN--RLQAVNEGWLFGLTSLEQLDLSY- 302 (873)
T ss_pred hhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccc--hhhhhhcccccccchhhhhccch-
Confidence 8887775543323446777777777777776 222233556666777777766 23333334455666666666665
Q ss_pred CcccccCccccccccCCCCceEEEEEeecCCCCCcCcccCCCCCCeEEEeeCcccCceeEEeCCCCCcccceeEEecCCC
Q 047959 286 GKMRQLSRMILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLKSMLW 365 (478)
Q Consensus 286 ~~l~~~p~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~ 365 (478)
+.+..+.. .--.|.++|+.|+|++|.++......+..+..|++|+|++|.+....-. . +.++.+|++|+|++ +.
T Consensus 303 NaI~rih~---d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~-a-f~~lssL~~LdLr~-N~ 376 (873)
T KOG4194|consen 303 NAIQRIHI---DSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEG-A-FVGLSSLHKLDLRS-NE 376 (873)
T ss_pred hhhheeec---chhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhh-H-HHHhhhhhhhcCcC-Ce
Confidence 55554432 1112256666666666666555555555555566666655554322111 1 34445555555554 22
Q ss_pred CCcee----eCCCcccccceeEEecCCCCCCCcc-ccCCCCCCCEEEEecC
Q 047959 366 LEEWT----MGAGAMPKLESLILNPCAYLRKLPE-EQWCIKSLCKLELHWP 411 (478)
Q Consensus 366 l~~l~----~~~~~~~~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~l~~c 411 (478)
+.... ..+..+++|++|++.+|. ++.+|. .+.++++|+.|++.++
T Consensus 377 ls~~IEDaa~~f~gl~~LrkL~l~gNq-lk~I~krAfsgl~~LE~LdL~~N 426 (873)
T KOG4194|consen 377 LSWCIEDAAVAFNGLPSLRKLRLTGNQ-LKSIPKRAFSGLEALEHLDLGDN 426 (873)
T ss_pred EEEEEecchhhhccchhhhheeecCce-eeecchhhhccCcccceecCCCC
Confidence 22110 011235555555555542 344442 3445555555555443
No 8
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.85 E-value=6.8e-21 Score=210.61 Aligned_cols=270 Identities=21% Similarity=0.240 Sum_probs=206.0
Q ss_pred ccccCCCCeEeEEEecCCC------CC-cCCccCCCCC-CCceEeecCCCCCccchhhhCCCCCcEEeCCCCcCcccchh
Q 047959 127 ENFCKKFKHLRVLNLGSAV------LD-QYPPGLENLF-YLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSPED 198 (478)
Q Consensus 127 ~~~~~~~~~L~~L~L~~~~------l~-~lp~~~~~l~-~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~ 198 (478)
...|..|++|+.|.+..+. +. .+|..+..++ +||+|.+.++.++.+|..+ ...+|+.|++.++.+..+|.+
T Consensus 551 ~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~ 629 (1153)
T PLN03210 551 ENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDG 629 (1153)
T ss_pred HHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccccccc
Confidence 3457889999999997653 22 5777777765 7999999999999999887 578999999999999999999
Q ss_pred hhccccCcEEEeeCCCCCCCCCCCCCCCCCCcEeCcccCC--CCCccccCCCCCCcEEEEEecCCcchhhHHHhccCCCC
Q 047959 199 IWMMQKLMHLNFGSITLPAPPKNNSSPLKNLIFISALHPS--SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHK 276 (478)
Q Consensus 199 i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~ 276 (478)
+..+++|+.|+++++.....+| .+..+++|++|++.+|. ...|..++++++|+.|++++| .....+|..+ ++++
T Consensus 630 ~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c--~~L~~Lp~~i-~l~s 705 (1153)
T PLN03210 630 VHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRC--ENLEILPTGI-NLKS 705 (1153)
T ss_pred cccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCC--CCcCccCCcC-CCCC
Confidence 9999999999997776556666 48889999999999987 778888999999999999998 4556666655 7899
Q ss_pred CCEEEEEecCcccccCccccccccCCCCceEEEEEeecCCCCCcCcccCCCCCCeEEEeeCcccCc---e---eEEeCCC
Q 047959 277 LECLKLVNEGKMRQLSRMILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLER---K---LACVGCS 350 (478)
Q Consensus 277 L~~L~l~~~~~l~~~p~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~---~---~~~~~~~ 350 (478)
|+.|++++|..+..+|. ..++|+.|++++|.+.. .+.. ..+++|+.|.+.++..... . .... ..
T Consensus 706 L~~L~Lsgc~~L~~~p~-------~~~nL~~L~L~~n~i~~-lP~~-~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~-~~ 775 (1153)
T PLN03210 706 LYRLNLSGCSRLKSFPD-------ISTNISWLDLDETAIEE-FPSN-LRLENLDELILCEMKSEKLWERVQPLTPLM-TM 775 (1153)
T ss_pred CCEEeCCCCCCcccccc-------ccCCcCeeecCCCcccc-cccc-ccccccccccccccchhhccccccccchhh-hh
Confidence 99999999888888875 15689999999998643 2322 2567777777764321100 0 0000 22
Q ss_pred CCcccceeEEecCCCCCceeeCCCcccccceeEEecCCCCCCCccccCCCCCCCEEEEecCc
Q 047959 351 SFPQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPCAYLRKLPEEQWCIKSLCKLELHWPQ 412 (478)
Q Consensus 351 ~~~~L~~L~L~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 412 (478)
.+++|+.|++++|+.+..+|...+.+++|+.|++++|..++.+|..+ ++++|+.|++++|.
T Consensus 776 ~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~ 836 (1153)
T PLN03210 776 LSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCS 836 (1153)
T ss_pred ccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCC
Confidence 34677777777777777777777777777777777777777777655 57777777777775
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.83 E-value=4.3e-22 Score=190.33 Aligned_cols=279 Identities=19% Similarity=0.181 Sum_probs=188.0
Q ss_pred ccccCCCCeEeEEEecCCCCCcCCccCCCCCCCceEeecCCCCCccc-hhhhCCCCCcEEeCCCCcCcccch-hhhcccc
Q 047959 127 ENFCKKFKHLRVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLP-SLLCTLLNLQTLEMPSSYIDHSPE-DIWMMQK 204 (478)
Q Consensus 127 ~~~~~~~~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~l~~lp~-~i~~l~~ 204 (478)
-.+|.++++|+.+++..|.++.+|.......||+.|+|.+|.|.++- +++..++.|++|||+.|.|.++|. .+..-.+
T Consensus 95 ~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~n 174 (873)
T KOG4194|consen 95 FEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVN 174 (873)
T ss_pred HHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCC
Confidence 46679999999999999999999997777778999999999988655 457888899999999999988874 3555578
Q ss_pred CcEEEeeCCCCCCCCCCCCCCCCCCcEeCcccCC-CCC-ccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEE
Q 047959 205 LMHLNFGSITLPAPPKNNSSPLKNLIFISALHPS-SCT-PDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKL 282 (478)
Q Consensus 205 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~-~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l 282 (478)
+++|++++|.++..-...|..+.+|.+|.++.+. ... +..|+++++|+.|++..|. ....-...++.+++|+.|.+
T Consensus 175 i~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~--irive~ltFqgL~Sl~nlkl 252 (873)
T KOG4194|consen 175 IKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNR--IRIVEGLTFQGLPSLQNLKL 252 (873)
T ss_pred ceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccc--eeeehhhhhcCchhhhhhhh
Confidence 9999998888877666778888899999999888 444 4457779999999888874 22222234455555555555
Q ss_pred EecCcccccCcc----------------------ccccccCCCCceEEEEEeecCCCCCcCcccCCCCCCeEEEeeCccc
Q 047959 283 VNEGKMRQLSRM----------------------ILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYL 340 (478)
Q Consensus 283 ~~~~~l~~~p~~----------------------~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~ 340 (478)
.. +.+..+.++ ..|+.. +.+|+.|++++|.+....++....+++|++|+|+.|.++
T Consensus 253 qr-N~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfg-Lt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~ 330 (873)
T KOG4194|consen 253 QR-NDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFG-LTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRIT 330 (873)
T ss_pred hh-cCcccccCcceeeecccceeecccchhhhhhcccccc-cchhhhhccchhhhheeecchhhhcccceeEeccccccc
Confidence 54 444444331 004444 555555555555554444444455555555555555544
Q ss_pred CceeEEeCCCCCcccceeEEecCCCCCceeeC-CCcccccceeEEecCCCC---CCCccccCCCCCCCEEEEecCc
Q 047959 341 ERKLACVGCSSFPQLKILHLKSMLWLEEWTMG-AGAMPKLESLILNPCAYL---RKLPEEQWCIKSLCKLELHWPQ 412 (478)
Q Consensus 341 ~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~-~~~~~~L~~L~l~~c~~l---~~lp~~l~~l~~L~~L~l~~c~ 412 (478)
...... +..+..|++|.|++ +.++.+... +..+.+|++|++++|..- ++-...+..+++|+.|++.|+.
T Consensus 331 ~l~~~s--f~~L~~Le~LnLs~-Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNq 403 (873)
T KOG4194|consen 331 RLDEGS--FRVLSQLEELNLSH-NSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQ 403 (873)
T ss_pred cCChhH--HHHHHHhhhhcccc-cchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCce
Confidence 332221 34455555555555 344443321 235788889988887643 2323355679999999999976
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.78 E-value=2e-22 Score=184.62 Aligned_cols=262 Identities=21% Similarity=0.216 Sum_probs=190.8
Q ss_pred eEeEEEecCCCCCcCCccCCCCCCCceEeecCCCCCccchhhhCCCCCcEEeCCCCcCcccchhhhccccCcEEEeeCCC
Q 047959 135 HLRVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSPEDIWMMQKLMHLNFGSIT 214 (478)
Q Consensus 135 ~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~ 214 (478)
.+..|.+++|.+..+-+.+.++..|.+|++++|.+.++|++++.+..++.|+.+++++.++|+.++.+.+|++++.++|.
T Consensus 46 ~l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~ 125 (565)
T KOG0472|consen 46 DLQKLILSHNDLEVLREDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNE 125 (565)
T ss_pred chhhhhhccCchhhccHhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccc
Confidence 35667777777776666677777777777777777777777777777777777777777777777777777777776665
Q ss_pred CCCCCCCCCCCCCCCcEeCcccCC-CCCccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCcccccCc
Q 047959 215 LPAPPKNNSSPLKNLIFISALHPS-SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQLSR 293 (478)
Q Consensus 215 ~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~p~ 293 (478)
. ..+|++++.+..|+.++...+. ...|..+.++.+|..+++.++ ....++...-.++.|++|+... +.++.+|.
T Consensus 126 ~-~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n---~l~~l~~~~i~m~~L~~ld~~~-N~L~tlP~ 200 (565)
T KOG0472|consen 126 L-KELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGN---KLKALPENHIAMKRLKHLDCNS-NLLETLPP 200 (565)
T ss_pred e-eecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhcccc---chhhCCHHHHHHHHHHhcccch-hhhhcCCh
Confidence 4 3566677777777777766666 777777777777777777776 3333333333477788888765 77778887
Q ss_pred cccccccCCCCceEEEEEeecCCCCCcCcccCCCCCCeEEEeeCcccCceeEEeCCCCCcccceeEEecCCCCCceeeCC
Q 047959 294 MILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLKSMLWLEEWTMGA 373 (478)
Q Consensus 294 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~ 373 (478)
.++. +.+|.-|++..|++. ..+.++++..|++|++..|.+....-.. ...++++..|++.+ +.++++|.+.
T Consensus 201 ---~lg~-l~~L~~LyL~~Nki~--~lPef~gcs~L~Elh~g~N~i~~lpae~--~~~L~~l~vLDLRd-Nklke~Pde~ 271 (565)
T KOG0472|consen 201 ---ELGG-LESLELLYLRRNKIR--FLPEFPGCSLLKELHVGENQIEMLPAEH--LKHLNSLLVLDLRD-NKLKEVPDEI 271 (565)
T ss_pred ---hhcc-hhhhHHHHhhhcccc--cCCCCCccHHHHHHHhcccHHHhhHHHH--hcccccceeeeccc-cccccCchHH
Confidence 7777 788888888888763 3447777888888888766664432221 45678888888887 5788888877
Q ss_pred CcccccceeEEecCCCCCCCccccCCCCCCCEEEEecCc
Q 047959 374 GAMPKLESLILNPCAYLRKLPEEQWCIKSLCKLELHWPQ 412 (478)
Q Consensus 374 ~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 412 (478)
.-+.+|+.|++++|. +..+|..++++ .|+.|.+.|+|
T Consensus 272 clLrsL~rLDlSNN~-is~Lp~sLgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 272 CLLRSLERLDLSNND-ISSLPYSLGNL-HLKFLALEGNP 308 (565)
T ss_pred HHhhhhhhhcccCCc-cccCCcccccc-eeeehhhcCCc
Confidence 778888888888764 56777778878 88888888887
No 11
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.76 E-value=6.6e-21 Score=191.41 Aligned_cols=169 Identities=24% Similarity=0.246 Sum_probs=101.2
Q ss_pred CCCccccCCCCCCcEEEEEecCC--------------------cchhhHHHhccCCCCCCEEEEEecCcccccCcccc--
Q 047959 239 SCTPDILGRLPNVQTLRISGDLS--------------------YYHSGVSKSLCQLHKLECLKLVNEGKMRQLSRMIL-- 296 (478)
Q Consensus 239 ~~~~~~l~~l~~L~~L~l~~~~~--------------------~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~p~~~~-- 296 (478)
...|.-++.+.+|+.++...+.- ...+.++......++|++|++.. +.+..+|+.+.
T Consensus 254 ~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~-N~L~~lp~~~l~v 332 (1081)
T KOG0618|consen 254 SNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQS-NNLPSLPDNFLAV 332 (1081)
T ss_pred hcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehh-ccccccchHHHhh
Confidence 34444566777888888887730 01223334445567888888886 55555543100
Q ss_pred --------------------ccccCCCCceEEEEEeecCCCCCcCcccCCCCCCeEEEeeCcccCceeEEeCCCCCcccc
Q 047959 297 --------------------SEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLK 356 (478)
Q Consensus 297 --------------------~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~ 356 (478)
.-....+.|+.|.+.+|.+++...+.+.++++|+.|+|++|.+....-.. +.+++.|+
T Consensus 333 ~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~--~~kle~Le 410 (1081)
T KOG0618|consen 333 LNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASK--LRKLEELE 410 (1081)
T ss_pred hhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHH--HhchHHhH
Confidence 00011445666777777777777777888888888888877654322222 56777788
Q ss_pred eeEEecCCCCCceeeCC----------------------CcccccceeEEecCCCCC-CCccccCCCCCCCEEEEecCc
Q 047959 357 ILHLKSMLWLEEWTMGA----------------------GAMPKLESLILNPCAYLR-KLPEEQWCIKSLCKLELHWPQ 412 (478)
Q Consensus 357 ~L~L~~~~~l~~l~~~~----------------------~~~~~L~~L~l~~c~~l~-~lp~~l~~l~~L~~L~l~~c~ 412 (478)
+|+|++ +.++.+|... ..++.|+.++++.|..-. .+|..... ++||+|+++|+.
T Consensus 411 eL~LSG-NkL~~Lp~tva~~~~L~tL~ahsN~l~~fPe~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 411 ELNLSG-NKLTTLPDTVANLGRLHTLRAHSNQLLSFPELAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNT 487 (1081)
T ss_pred HHhccc-chhhhhhHHHHhhhhhHHHhhcCCceeechhhhhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCc
Confidence 888887 4666555433 345666777776554322 23333322 677888887776
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.75 E-value=1.6e-21 Score=178.83 Aligned_cols=244 Identities=22% Similarity=0.240 Sum_probs=212.2
Q ss_pred CCCCeEeEEEecCCCCCcCCccCCCCCCCceEeecCCCCCccchhhhCCCCCcEEeCCCCcCcccchhhhccccCcEEEe
Q 047959 131 KKFKHLRVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSPEDIWMMQKLMHLNF 210 (478)
Q Consensus 131 ~~~~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l 210 (478)
..+..|.+|++.+|.+..+|.+++.+..++.|+.++|++..+|+.++.+.+|..|+.+++.+.++|++++.+..|..++.
T Consensus 65 ~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~ 144 (565)
T KOG0472|consen 65 KNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDA 144 (565)
T ss_pred hcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhc
Confidence 56678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCCCCCCCCCCCCcEeCcccCC-CCCccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCccc
Q 047959 211 GSITLPAPPKNNSSPLKNLIFISALHPS-SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMR 289 (478)
Q Consensus 211 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~ 289 (478)
++|. ....|.++.++.+|..+.+.++. ...++..-+++.|++|+...+ ..+.+|..++.+.+|+.|+++. +++.
T Consensus 145 ~~N~-i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N---~L~tlP~~lg~l~~L~~LyL~~-Nki~ 219 (565)
T KOG0472|consen 145 TNNQ-ISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSN---LLETLPPELGGLESLELLYLRR-NKIR 219 (565)
T ss_pred cccc-cccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchh---hhhcCChhhcchhhhHHHHhhh-cccc
Confidence 5554 45788889999999999988888 667766666999999998875 7888999999999999999998 9999
Q ss_pred ccCccccccccCCCCceEEEEEeecCCCCCcCcccCCCCCCeEEEeeCcccCceeEEeCCCCCcccceeEEecCCCCCce
Q 047959 290 QLSRMILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLKSMLWLEEW 369 (478)
Q Consensus 290 ~~p~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l 369 (478)
.+| .++. +..|+.|++..|++.-........++++.+|++++|++....-. +.-+.+|++|++++ +.++.+
T Consensus 220 ~lP----ef~g-cs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde---~clLrsL~rLDlSN-N~is~L 290 (565)
T KOG0472|consen 220 FLP----EFPG-CSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDE---ICLLRSLERLDLSN-NDISSL 290 (565)
T ss_pred cCC----CCCc-cHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchH---HHHhhhhhhhcccC-CccccC
Confidence 899 5777 89999999999987554444566899999999999998654322 45678899999998 689999
Q ss_pred eeCCCcccccceeEEecCCC
Q 047959 370 TMGAGAMPKLESLILNPCAY 389 (478)
Q Consensus 370 ~~~~~~~~~L~~L~l~~c~~ 389 (478)
|...+++ .|+.|.+.+||.
T Consensus 291 p~sLgnl-hL~~L~leGNPl 309 (565)
T KOG0472|consen 291 PYSLGNL-HLKFLALEGNPL 309 (565)
T ss_pred Ccccccc-eeeehhhcCCch
Confidence 9999999 999999999884
No 13
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.67 E-value=3.2e-16 Score=162.21 Aligned_cols=233 Identities=20% Similarity=0.149 Sum_probs=158.5
Q ss_pred eEeEEEecCCCCCcCCccCCCCCCCceEeecCCCCCccchhhhCCCCCcEEeCCCCcCcccchhhhccccCcEEEeeCCC
Q 047959 135 HLRVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSPEDIWMMQKLMHLNFGSIT 214 (478)
Q Consensus 135 ~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~ 214 (478)
+|+.|++++|.++.+|.. .++|++|++++|.++.+|.. .++|+.|++++|.+..+|.. ..+|+.|++++|.
T Consensus 223 ~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~L~~Lp~l---p~~L~~L~Ls~N~ 293 (788)
T PRK15387 223 HITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNPLTHLPAL---PSGLCKLWIFGNQ 293 (788)
T ss_pred CCCEEEccCCcCCCCCCC---CCCCcEEEecCCccCcccCc---ccccceeeccCCchhhhhhc---hhhcCEEECcCCc
Confidence 566777777777766652 45677777777777766642 35677777777777666652 2457777776665
Q ss_pred CCCCCCCCCCCCCCCcEeCcccCC-CCCccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCcccccCc
Q 047959 215 LPAPPKNNSSPLKNLIFISALHPS-SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQLSR 293 (478)
Q Consensus 215 ~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~p~ 293 (478)
+. .+|. .+++|+.|++++|. ..++.. ..+|+.|.+++|. ...+|. ...+|+.|++++ +.++.+|.
T Consensus 294 Lt-~LP~---~p~~L~~LdLS~N~L~~Lp~l---p~~L~~L~Ls~N~---L~~LP~---lp~~Lq~LdLS~-N~Ls~LP~ 359 (788)
T PRK15387 294 LT-SLPV---LPPGLQELSVSDNQLASLPAL---PSELCKLWAYNNQ---LTSLPT---LPSGLQELSVSD-NQLASLPT 359 (788)
T ss_pred cc-cccc---cccccceeECCCCccccCCCC---cccccccccccCc---cccccc---cccccceEecCC-CccCCCCC
Confidence 43 3443 23577888877776 333332 2356677777762 222332 124788999987 88888885
Q ss_pred cccccccCCCCceEEEEEeecCCCCCcCcccCCCCCCeEEEeeCcccCceeEEeCCCCCcccceeEEecCCCCCceeeCC
Q 047959 294 MILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLKSMLWLEEWTMGA 373 (478)
Q Consensus 294 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~ 373 (478)
..++|+.|++++|.+.. .+.. .++|+.|++++|.+.... ...++|+.|+++++ .++.+|..
T Consensus 360 -------lp~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt~LP------~l~s~L~~LdLS~N-~LssIP~l- 420 (788)
T PRK15387 360 -------LPSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTSLP------VLPSELKELMVSGN-RLTSLPML- 420 (788)
T ss_pred -------CCcccceehhhcccccc-Cccc---ccccceEEecCCcccCCC------CcccCCCEEEccCC-cCCCCCcc-
Confidence 14678888888888754 2222 357899999988876422 12468999999984 67777753
Q ss_pred CcccccceeEEecCCCCCCCccccCCCCCCCEEEEecCc
Q 047959 374 GAMPKLESLILNPCAYLRKLPEEQWCIKSLCKLELHWPQ 412 (478)
Q Consensus 374 ~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 412 (478)
+.+|+.|++++|. ++.+|..+.++++|+.|++++++
T Consensus 421 --~~~L~~L~Ls~Nq-Lt~LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 421 --PSGLLSLSVYRNQ-LTRLPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred --hhhhhhhhhccCc-ccccChHHhhccCCCeEECCCCC
Confidence 4578899999875 66899989999999999999987
No 14
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.67 E-value=1.2e-16 Score=166.30 Aligned_cols=244 Identities=18% Similarity=0.225 Sum_probs=177.2
Q ss_pred CeEeEEEecCCCCCcCCccCCCCCCCceEeecCCCCCccchhhhCCCCCcEEeCCCCcCcccchhhhccccCcEEEeeCC
Q 047959 134 KHLRVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSPEDIWMMQKLMHLNFGSI 213 (478)
Q Consensus 134 ~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~ 213 (478)
.+...|+++++.++.+|..+. ++|+.|++++|.++.+|..+. .+|++|++++|++..+|..+. .+|+.|++++|
T Consensus 178 ~~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N 251 (754)
T PRK15370 178 NNKTELRLKILGLTTIPACIP--EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSIN 251 (754)
T ss_pred cCceEEEeCCCCcCcCCcccc--cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcCC
Confidence 346788888888888887664 478899999998888887664 589999999888888887654 47889999777
Q ss_pred CCCCCCCCCCCCCCCCcEeCcccCC-CCCccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCcccccC
Q 047959 214 TLPAPPKNNSSPLKNLIFISALHPS-SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQLS 292 (478)
Q Consensus 214 ~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~p 292 (478)
.+. .+|..+. ++|+.|+++.+. ..+|..+. ++|+.|++++|. . ..++..+ .++|+.|++++ +.++.+|
T Consensus 252 ~L~-~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~--L-t~LP~~l--p~sL~~L~Ls~-N~Lt~LP 320 (754)
T PRK15370 252 RIT-ELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNS--I-RTLPAHL--PSGITHLNVQS-NSLTALP 320 (754)
T ss_pred ccC-cCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCc--c-ccCcccc--hhhHHHHHhcC-CccccCC
Confidence 654 6666553 478888888776 55555443 578999998873 2 2233322 24688888887 7888887
Q ss_pred ccccccccCCCCceEEEEEeecCCCCCcCcccCCCCCCeEEEeeCcccCceeEEeCCCCCcccceeEEecCCCCCceeeC
Q 047959 293 RMILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLKSMLWLEEWTMG 372 (478)
Q Consensus 293 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~ 372 (478)
. .+ +++|+.|++++|.++. .+..+ .++|+.|++++|.+.... . .-.++|+.|+|++| .+..+|..
T Consensus 321 ~---~l---~~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~L~~LP-~----~lp~~L~~LdLs~N-~Lt~LP~~ 385 (754)
T PRK15370 321 E---TL---PPGLKTLEAGENALTS-LPASL--PPELQVLDVSKNQITVLP-E----TLPPTITTLDVSRN-ALTNLPEN 385 (754)
T ss_pred c---cc---cccceeccccCCcccc-CChhh--cCcccEEECCCCCCCcCC-h----hhcCCcCEEECCCC-cCCCCCHh
Confidence 5 33 4689999999998765 33333 268999999988876422 1 12468999999985 67777754
Q ss_pred CCcccccceeEEecCCCCCCCccccC----CCCCCCEEEEecCc
Q 047959 373 AGAMPKLESLILNPCAYLRKLPEEQW----CIKSLCKLELHWPQ 412 (478)
Q Consensus 373 ~~~~~~L~~L~l~~c~~l~~lp~~l~----~l~~L~~L~l~~c~ 412 (478)
. .++|+.|++++|. +..+|..+. .++++..|++.++|
T Consensus 386 l--~~sL~~LdLs~N~-L~~LP~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 386 L--PAALQIMQASRNN-LVRLPESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred H--HHHHHHHhhccCC-cccCchhHHHHhhcCCCccEEEeeCCC
Confidence 3 2479999999875 556666443 45888999999987
No 15
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.66 E-value=8.6e-19 Score=142.94 Aligned_cols=159 Identities=19% Similarity=0.257 Sum_probs=132.3
Q ss_pred CCCCeEeEEEecCCCCCcCCccCCCCCCCceEeecCCCCCccchhhhCCCCCcEEeCCCCcCcccchhhhccccCcEEEe
Q 047959 131 KKFKHLRVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSPEDIWMMQKLMHLNF 210 (478)
Q Consensus 131 ~~~~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l 210 (478)
-.+.+++.|.|++|+++.+|..+..+.+|+.|++.+|+++++|.+++.+++|+.|+++-|++..+|.+++.++.|+.||+
T Consensus 30 f~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldl 109 (264)
T KOG0617|consen 30 FNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDL 109 (264)
T ss_pred cchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhc
Confidence 35677888899999999888889999999999999999999999999999999999998888889999999999999999
Q ss_pred eCCCCCC-CCCCCCCCCCCCcEeCcccCC-CCCccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCcc
Q 047959 211 GSITLPA-PPKNNSSPLKNLIFISALHPS-SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKM 288 (478)
Q Consensus 211 ~~~~~~~-~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l 288 (478)
++|.... .+|..|-.++.|..|++.++. ...|..++++++|+.|.+..+ ..-.+|..++.+..|+.|.+.+ +.+
T Consensus 110 tynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdn---dll~lpkeig~lt~lrelhiqg-nrl 185 (264)
T KOG0617|consen 110 TYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDN---DLLSLPKEIGDLTRLRELHIQG-NRL 185 (264)
T ss_pred cccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccC---chhhCcHHHHHHHHHHHHhccc-cee
Confidence 8887755 567778788888888888888 778888888888888888775 4556677777777777777776 777
Q ss_pred cccCc
Q 047959 289 RQLSR 293 (478)
Q Consensus 289 ~~~p~ 293 (478)
+-+|.
T Consensus 186 ~vlpp 190 (264)
T KOG0617|consen 186 TVLPP 190 (264)
T ss_pred eecCh
Confidence 76665
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.60 E-value=2.4e-15 Score=155.77 Aligned_cols=230 Identities=17% Similarity=0.091 Sum_probs=175.2
Q ss_pred ccccCCCCeEeEEEecCCCCCcCCccCCCCCCCceEeecCCCCCccchhhhCCCCCcEEeCCCCcCcccchhhhccccCc
Q 047959 127 ENFCKKFKHLRVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSPEDIWMMQKLM 206 (478)
Q Consensus 127 ~~~~~~~~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~ 206 (478)
..++...++|++|++++|.++.+|.. .++|+.|++++|.+..+|... .+|+.|++++|++..+|.. .++|+
T Consensus 235 t~LP~lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~L~~Lp~lp---~~L~~L~Ls~N~Lt~LP~~---p~~L~ 305 (788)
T PRK15387 235 TSLPALPPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNPLTHLPALP---SGLCKLWIFGNQLTSLPVL---PPGLQ 305 (788)
T ss_pred CCCCCCCCCCcEEEecCCccCcccCc---ccccceeeccCCchhhhhhch---hhcCEEECcCCcccccccc---ccccc
Confidence 44555678999999999999988863 468999999999999888643 5789999999999999863 47899
Q ss_pred EEEeeCCCCCCCCCCCCCCCCCCcEeCcccCC-CCCccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEec
Q 047959 207 HLNFGSITLPAPPKNNSSPLKNLIFISALHPS-SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNE 285 (478)
Q Consensus 207 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~ 285 (478)
+|++++|.+. .+|.. ..+|+.|.+.+|. ..+|.. ..+|+.|++++|. . ..+|. ..++|+.|++++
T Consensus 306 ~LdLS~N~L~-~Lp~l---p~~L~~L~Ls~N~L~~LP~l---p~~Lq~LdLS~N~--L-s~LP~---lp~~L~~L~Ls~- 371 (788)
T PRK15387 306 ELSVSDNQLA-SLPAL---PSELCKLWAYNNQLTSLPTL---PSGLQELSVSDNQ--L-ASLPT---LPSELYKLWAYN- 371 (788)
T ss_pred eeECCCCccc-cCCCC---cccccccccccCcccccccc---ccccceEecCCCc--c-CCCCC---CCcccceehhhc-
Confidence 9999888665 35542 2467788888876 444431 2479999999983 2 23443 245788899987
Q ss_pred CcccccCccccccccCCCCceEEEEEeecCCCCCcCcccCCCCCCeEEEeeCcccCceeEEeCCCCCcccceeEEecCCC
Q 047959 286 GKMRQLSRMILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLKSMLW 365 (478)
Q Consensus 286 ~~l~~~p~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~ 365 (478)
+.+..+|. . +.+|+.|++++|.++.. +.. .++|+.|++++|.+... +. .+.+|+.|++++ +.
T Consensus 372 N~L~~LP~---l----~~~L~~LdLs~N~Lt~L-P~l---~s~L~~LdLS~N~LssI-P~-----l~~~L~~L~Ls~-Nq 433 (788)
T PRK15387 372 NRLTSLPA---L----PSGLKELIVSGNRLTSL-PVL---PSELKELMVSGNRLTSL-PM-----LPSGLLSLSVYR-NQ 433 (788)
T ss_pred cccccCcc---c----ccccceEEecCCcccCC-CCc---ccCCCEEEccCCcCCCC-Cc-----chhhhhhhhhcc-Cc
Confidence 88888886 2 46899999999998642 222 36899999999988642 21 245789999998 57
Q ss_pred CCceeeCCCcccccceeEEecCCCCCCCcccc
Q 047959 366 LEEWTMGAGAMPKLESLILNPCAYLRKLPEEQ 397 (478)
Q Consensus 366 l~~l~~~~~~~~~L~~L~l~~c~~l~~lp~~l 397 (478)
++.+|..+..+++|+.|++++|+.-...|..+
T Consensus 434 Lt~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 434 LTRLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred ccccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 88999888899999999999998766555433
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.59 E-value=1.8e-15 Score=157.56 Aligned_cols=224 Identities=21% Similarity=0.272 Sum_probs=172.8
Q ss_pred CeEeEEEecCCCCCcCCccCCCCCCCceEeecCCCCCccchhhhCCCCCcEEeCCCCcCcccchhhhccccCcEEEeeCC
Q 047959 134 KHLRVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSPEDIWMMQKLMHLNFGSI 213 (478)
Q Consensus 134 ~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~ 213 (478)
+.|+.|++++|.++.+|..+. .+|++|++++|.++.+|..+. .+|+.|++++|.+..+|..+. .+|+.|++++|
T Consensus 199 ~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N 272 (754)
T PRK15370 199 EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSINRITELPERLP--SALQSLDLFHN 272 (754)
T ss_pred cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcCCccCcCChhHh--CCCCEEECcCC
Confidence 479999999999999998764 599999999999999998764 589999999999999998765 58999999877
Q ss_pred CCCCCCCCCCCCCCCCcEeCcccCC-CCCccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCcccccC
Q 047959 214 TLPAPPKNNSSPLKNLIFISALHPS-SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQLS 292 (478)
Q Consensus 214 ~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~p 292 (478)
.+. .+|..+. ++|+.|++++|. ..++..+. ++|+.|++++|. . ..++..+ .++|+.|++++ +.++.+|
T Consensus 273 ~L~-~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N~--L-t~LP~~l--~~sL~~L~Ls~-N~Lt~LP 341 (754)
T PRK15370 273 KIS-CLPENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQSNS--L-TALPETL--PPGLKTLEAGE-NALTSLP 341 (754)
T ss_pred ccC-ccccccC--CCCcEEECCCCccccCcccch--hhHHHHHhcCCc--c-ccCCccc--cccceeccccC-CccccCC
Confidence 665 5776554 589999999987 55554443 478899999873 2 2334332 36899999998 7788888
Q ss_pred ccccccccCCCCceEEEEEeecCCCCCcCcccCCCCCCeEEEeeCcccCceeEEeCCCCCcccceeEEecCCCCCceeeC
Q 047959 293 RMILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLKSMLWLEEWTMG 372 (478)
Q Consensus 293 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~ 372 (478)
. .+ +++|+.|++++|.+.. .+..+ .++|+.|+|++|.+..... .-..+|+.|++++ +.+..+|..
T Consensus 342 ~---~l---~~sL~~L~Ls~N~L~~-LP~~l--p~~L~~LdLs~N~Lt~LP~-----~l~~sL~~LdLs~-N~L~~LP~s 406 (754)
T PRK15370 342 A---SL---PPELQVLDVSKNQITV-LPETL--PPTITTLDVSRNALTNLPE-----NLPAALQIMQASR-NNLVRLPES 406 (754)
T ss_pred h---hh---cCcccEEECCCCCCCc-CChhh--cCCcCEEECCCCcCCCCCH-----hHHHHHHHHhhcc-CCcccCchh
Confidence 6 44 4799999999998764 33333 3689999999998874321 1234799999998 467777654
Q ss_pred C----CcccccceeEEecCCC
Q 047959 373 A----GAMPKLESLILNPCAY 389 (478)
Q Consensus 373 ~----~~~~~L~~L~l~~c~~ 389 (478)
. ..+|.+..|++.+|+.
T Consensus 407 l~~~~~~~~~l~~L~L~~Npl 427 (754)
T PRK15370 407 LPHFRGEGPQPTRIIVEYNPF 427 (754)
T ss_pred HHHHhhcCCCccEEEeeCCCc
Confidence 3 3458899999999985
No 18
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.58 E-value=1.3e-17 Score=168.11 Aligned_cols=245 Identities=22% Similarity=0.255 Sum_probs=145.7
Q ss_pred CCeEeEEEecCCCCCcCCccCCCCCCCceEeecCCCCCccchhhhCCCCCcEEeCCCCcCcccchhhhccccCcEEEeeC
Q 047959 133 FKHLRVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSPEDIWMMQKLMHLNFGS 212 (478)
Q Consensus 133 ~~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~ 212 (478)
-.+|++++++.+.++.+|+.++.+.+|+.++..+|.+.++|..+....+|+.|++..|.++.+|+....++.|++|++..
T Consensus 240 p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~ 319 (1081)
T KOG0618|consen 240 PLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQS 319 (1081)
T ss_pred cccceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehh
Confidence 34566777777777777766777777777777777777777666666777777777777777776666677777777755
Q ss_pred CCCCCCCCCC-CCCCC-CCcEeCcccCC-CCCcc-ccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCcc
Q 047959 213 ITLPAPPKNN-SSPLK-NLIFISALHPS-SCTPD-ILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKM 288 (478)
Q Consensus 213 ~~~~~~~~~~-~~~l~-~L~~L~l~~~~-~~~~~-~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l 288 (478)
|.+. .+|+. +..+. +|..|+.+.+. ...+. .=..+..|+.|.+.+| ...+.....+.++++|+.|++++ +.+
T Consensus 320 N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN--~Ltd~c~p~l~~~~hLKVLhLsy-NrL 395 (1081)
T KOG0618|consen 320 NNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANN--HLTDSCFPVLVNFKHLKVLHLSY-NRL 395 (1081)
T ss_pred cccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcC--cccccchhhhccccceeeeeecc-ccc
Confidence 5433 23321 11111 13333333222 11110 0112344566666666 45555556666777777777776 777
Q ss_pred cccCccccccccCCCCceEEEEEeecCCCCCcCcccCCCCCCeEEEeeCcccCceeEEeCCCCCcccceeEEecCCCCCc
Q 047959 289 RQLSRMILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLKSMLWLEE 368 (478)
Q Consensus 289 ~~~p~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~ 368 (478)
..+|.. .+.+ ++.|+.|++++|.++. .+..+..++.|++|...+|.+.... . +..++.|+.++++. ++++.
T Consensus 396 ~~fpas--~~~k-le~LeeL~LSGNkL~~-Lp~tva~~~~L~tL~ahsN~l~~fP-e---~~~l~qL~~lDlS~-N~L~~ 466 (1081)
T KOG0618|consen 396 NSFPAS--KLRK-LEELEELNLSGNKLTT-LPDTVANLGRLHTLRAHSNQLLSFP-E---LAQLPQLKVLDLSC-NNLSE 466 (1081)
T ss_pred ccCCHH--HHhc-hHHhHHHhcccchhhh-hhHHHHhhhhhHHHhhcCCceeech-h---hhhcCcceEEeccc-chhhh
Confidence 777763 3455 6777777777777543 4466677777777777666654322 1 45667777777765 55654
Q ss_pred eeeCCCcc-cccceeEEecCCCC
Q 047959 369 WTMGAGAM-PKLESLILNPCAYL 390 (478)
Q Consensus 369 l~~~~~~~-~~L~~L~l~~c~~l 390 (478)
+......- |+|+.|++++|..+
T Consensus 467 ~~l~~~~p~p~LkyLdlSGN~~l 489 (1081)
T KOG0618|consen 467 VTLPEALPSPNLKYLDLSGNTRL 489 (1081)
T ss_pred hhhhhhCCCcccceeeccCCccc
Confidence 33222222 67777777777654
No 19
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.58 E-value=1.7e-17 Score=135.40 Aligned_cols=159 Identities=19% Similarity=0.261 Sum_probs=131.8
Q ss_pred cCCccCCCCCCCceEeecCCCCCccchhhhCCCCCcEEeCCCCcCcccchhhhccccCcEEEeeCCCCCCCCCCCCCCCC
Q 047959 148 QYPPGLENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSPEDIWMMQKLMHLNFGSITLPAPPKNNSSPLK 227 (478)
Q Consensus 148 ~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~ 227 (478)
++|. +-.+.++..|.+++|.++..|+.+..+.+|+.|++.+|.++++|..++.+++|++|+++-|.. ..+|.+|+.++
T Consensus 25 ~~~g-Lf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl-~~lprgfgs~p 102 (264)
T KOG0617|consen 25 ELPG-LFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRL-NILPRGFGSFP 102 (264)
T ss_pred hccc-ccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhh-hcCccccCCCc
Confidence 4444 457788999999999999999999999999999999999999999999999999999966654 46899999999
Q ss_pred CCcEeCcccCC---CCCccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCcccccCccccccccCCCC
Q 047959 228 NLIFISALHPS---SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQLSRMILSEYKFPPS 304 (478)
Q Consensus 228 ~L~~L~l~~~~---~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~p~~~~~~~~~~~~ 304 (478)
.|+.|++..++ ...|..|-.++.|+-|.++.+ ..+.+|..++++++|+.|.++. +.+-++|+ .++. +..
T Consensus 103 ~levldltynnl~e~~lpgnff~m~tlralyl~dn---dfe~lp~dvg~lt~lqil~lrd-ndll~lpk---eig~-lt~ 174 (264)
T KOG0617|consen 103 ALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDN---DFEILPPDVGKLTNLQILSLRD-NDLLSLPK---EIGD-LTR 174 (264)
T ss_pred hhhhhhccccccccccCCcchhHHHHHHHHHhcCC---CcccCChhhhhhcceeEEeecc-CchhhCcH---HHHH-HHH
Confidence 99999998887 667777777777877777775 5566777777888888888876 66777777 7777 777
Q ss_pred ceEEEEEeecCC
Q 047959 305 LTQLSLSNTELV 316 (478)
Q Consensus 305 L~~L~l~~~~~~ 316 (478)
|+.|++.+|.++
T Consensus 175 lrelhiqgnrl~ 186 (264)
T KOG0617|consen 175 LRELHIQGNRLT 186 (264)
T ss_pred HHHHhcccceee
Confidence 888888777753
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.55 E-value=1.1e-16 Score=154.04 Aligned_cols=183 Identities=22% Similarity=0.206 Sum_probs=76.5
Q ss_pred CCCCCCCceEeecCCCCC-----ccchhhhCCCCCcEEeCCCCcCcc-------cchhhhccccCcEEEeeCCCCCCCCC
Q 047959 153 LENLFYLKYLKLNIPSLK-----CLPSLLCTLLNLQTLEMPSSYIDH-------SPEDIWMMQKLMHLNFGSITLPAPPK 220 (478)
Q Consensus 153 ~~~l~~L~~L~l~~~~i~-----~lp~~~~~l~~L~~L~l~~~~l~~-------lp~~i~~l~~L~~L~l~~~~~~~~~~ 220 (478)
+..+.+|++|+++++.++ .++..+...++|++|+++++.+.. ++..+..+++|++|++++|.+....+
T Consensus 19 ~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 98 (319)
T cd00116 19 LPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGC 98 (319)
T ss_pred HHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHH
Confidence 334444555555555542 234444444555555555553332 12334445555555554443332222
Q ss_pred CCCCCCC---CCcEeCcccCC-C-----CCccccCCC-CCCcEEEEEecCC--cchhhHHHhccCCCCCCEEEEEecCcc
Q 047959 221 NNSSPLK---NLIFISALHPS-S-----CTPDILGRL-PNVQTLRISGDLS--YYHSGVSKSLCQLHKLECLKLVNEGKM 288 (478)
Q Consensus 221 ~~~~~l~---~L~~L~l~~~~-~-----~~~~~l~~l-~~L~~L~l~~~~~--~~~~~l~~~l~~~~~L~~L~l~~~~~l 288 (478)
..+..+. +|+.|++.+|. . .....+..+ ++|+.|++++|.- .....+...+..+++|++|++++ +.+
T Consensus 99 ~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~-n~l 177 (319)
T cd00116 99 GVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLAN-NGI 177 (319)
T ss_pred HHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcC-CCC
Confidence 2221111 24444433332 1 111223333 5555555555530 01122333444445555555554 333
Q ss_pred c-----ccCccccccccCCCCceEEEEEeecCCCCCc----CcccCCCCCCeEEEeeCccc
Q 047959 289 R-----QLSRMILSEYKFPPSLTQLSLSNTELVEDPM----PTLEELPHLEVLKLKQNSYL 340 (478)
Q Consensus 289 ~-----~~p~~~~~~~~~~~~L~~L~l~~~~~~~~~~----~~l~~l~~L~~L~L~~~~~~ 340 (478)
+ .++. .+.. .++|++|++++|.+.+... ..+..+++|++|++++|.+.
T Consensus 178 ~~~~~~~l~~---~l~~-~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~ 234 (319)
T cd00116 178 GDAGIRALAE---GLKA-NCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLT 234 (319)
T ss_pred chHHHHHHHH---HHHh-CCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCc
Confidence 2 1222 2223 3455555555555432211 12334455555555555443
No 21
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.46 E-value=1.7e-15 Score=145.74 Aligned_cols=231 Identities=19% Similarity=0.142 Sum_probs=160.4
Q ss_pred CccccCCCCeEeEEEecCCCCC-----cCCccCCCCCCCceEeecCCCCCc-------cchhhhCCCCCcEEeCCCCcCc
Q 047959 126 CENFCKKFKHLRVLNLGSAVLD-----QYPPGLENLFYLKYLKLNIPSLKC-------LPSLLCTLLNLQTLEMPSSYID 193 (478)
Q Consensus 126 ~~~~~~~~~~L~~L~L~~~~l~-----~lp~~~~~l~~L~~L~l~~~~i~~-------lp~~~~~l~~L~~L~l~~~~l~ 193 (478)
|..++..+..|++|+++++.++ .++..+...+.|++|+++++.+.. ++..+..+++|+.|++++|.+.
T Consensus 15 ~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 94 (319)
T cd00116 15 ATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALG 94 (319)
T ss_pred hHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCC
Confidence 4556677788999999999984 466667788889999999887652 3455777889999999999765
Q ss_pred -ccchhhhcccc---CcEEEeeCCCCCC----CCCCCCCCC-CCCcEeCcccCC-C-----CCccccCCCCCCcEEEEEe
Q 047959 194 -HSPEDIWMMQK---LMHLNFGSITLPA----PPKNNSSPL-KNLIFISALHPS-S-----CTPDILGRLPNVQTLRISG 258 (478)
Q Consensus 194 -~lp~~i~~l~~---L~~L~l~~~~~~~----~~~~~~~~l-~~L~~L~l~~~~-~-----~~~~~l~~l~~L~~L~l~~ 258 (478)
..+..+..+.+ |++|++++|.... .+...+..+ ++|+.|++.+|. . .....+..+++|++|++++
T Consensus 95 ~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~ 174 (319)
T cd00116 95 PDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLAN 174 (319)
T ss_pred hhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcC
Confidence 45555666665 9999998886652 222334556 899999999997 2 2344577788999999999
Q ss_pred cC--CcchhhHHHhccCCCCCCEEEEEecCccc-----ccCccccccccCCCCceEEEEEeecCCCCCcCccc-----CC
Q 047959 259 DL--SYYHSGVSKSLCQLHKLECLKLVNEGKMR-----QLSRMILSEYKFPPSLTQLSLSNTELVEDPMPTLE-----EL 326 (478)
Q Consensus 259 ~~--~~~~~~l~~~l~~~~~L~~L~l~~~~~l~-----~~p~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~-----~l 326 (478)
+. ......++..+...++|+.|++++ +.++ .++. .+.. +++|++|++++|.+.+.....+. ..
T Consensus 175 n~l~~~~~~~l~~~l~~~~~L~~L~L~~-n~i~~~~~~~l~~---~~~~-~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~ 249 (319)
T cd00116 175 NGIGDAGIRALAEGLKANCNLEVLDLNN-NGLTDEGASALAE---TLAS-LKSLEVLNLGDNNLTDAGAAALASALLSPN 249 (319)
T ss_pred CCCchHHHHHHHHHHHhCCCCCEEeccC-CccChHHHHHHHH---Hhcc-cCCCCEEecCCCcCchHHHHHHHHHHhccC
Confidence 84 111234555666778999999998 4443 3444 5566 89999999999987653222222 23
Q ss_pred CCCCeEEEeeCcccCceeE---EeCCCCCcccceeEEec
Q 047959 327 PHLEVLKLKQNSYLERKLA---CVGCSSFPQLKILHLKS 362 (478)
Q Consensus 327 ~~L~~L~L~~~~~~~~~~~---~~~~~~~~~L~~L~L~~ 362 (478)
+.|+.|++++|.+++.... .. ...+++|+.+++++
T Consensus 250 ~~L~~L~l~~n~i~~~~~~~l~~~-~~~~~~L~~l~l~~ 287 (319)
T cd00116 250 ISLLTLSLSCNDITDDGAKDLAEV-LAEKESLLELDLRG 287 (319)
T ss_pred CCceEEEccCCCCCcHHHHHHHHH-HhcCCCccEEECCC
Confidence 6788888887776532210 00 23345666666665
No 22
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.42 E-value=2.6e-15 Score=138.08 Aligned_cols=131 Identities=17% Similarity=0.251 Sum_probs=88.7
Q ss_pred ccCCCC-eEeEEEecCCCCCcCCcc-CCCCCCCceEeecCCCCCc-cchhhhCCCCCcEEeCCC-CcCcccchh-hhccc
Q 047959 129 FCKKFK-HLRVLNLGSAVLDQYPPG-LENLFYLKYLKLNIPSLKC-LPSLLCTLLNLQTLEMPS-SYIDHSPED-IWMMQ 203 (478)
Q Consensus 129 ~~~~~~-~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~l~~~~i~~-lp~~~~~l~~L~~L~l~~-~~l~~lp~~-i~~l~ 203 (478)
++.+++ .-..+.|..|.|+.+|+. |+.+++||.|+|++|.|+. -|..+.++..|..|-+.+ |+|+++|.+ +++|.
T Consensus 61 VP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~ 140 (498)
T KOG4237|consen 61 VPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLS 140 (498)
T ss_pred CcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHH
Confidence 344433 356677888888877766 7788888888888888884 456677788777777777 588888754 56777
Q ss_pred cCcEEEeeCCCCCCCCCCCCCCCCCCcEeCcccCC-CCCcc-ccCCCCCCcEEEEEec
Q 047959 204 KLMHLNFGSITLPAPPKNNSSPLKNLIFISALHPS-SCTPD-ILGRLPNVQTLRISGD 259 (478)
Q Consensus 204 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~-~l~~l~~L~~L~l~~~ 259 (478)
.|+.|.+.-|...-.....+..+++|..|.+.++. ..+.. .+..+..++.+.+..+
T Consensus 141 slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~n 198 (498)
T KOG4237|consen 141 SLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQN 198 (498)
T ss_pred HHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcC
Confidence 78877775444443444556677777777777776 44443 5666677776666655
No 23
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.39 E-value=1.6e-13 Score=145.26 Aligned_cols=229 Identities=23% Similarity=0.220 Sum_probs=149.2
Q ss_pred CCCCeEeEEEecCCC--CCcCCcc-CCCCCCCceEeecCCC-CCccchhhhCCCCCcEEeCCCCcCcccchhhhccccCc
Q 047959 131 KKFKHLRVLNLGSAV--LDQYPPG-LENLFYLKYLKLNIPS-LKCLPSLLCTLLNLQTLEMPSSYIDHSPEDIWMMQKLM 206 (478)
Q Consensus 131 ~~~~~L~~L~L~~~~--l~~lp~~-~~~l~~L~~L~l~~~~-i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~ 206 (478)
...+.|++|-+.++. +..++.. |..++.|++|++++|. +..+|+++++|-+|++|+++++.+..+|.++++|.+|.
T Consensus 542 ~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~ 621 (889)
T KOG4658|consen 542 SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLI 621 (889)
T ss_pred CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhh
Confidence 556689999999996 5666555 7789999999999864 66999999999999999999999999999999999999
Q ss_pred EEEeeCCCCCCCCCCCCCCCCCCcEeCcccCC----CCCccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCE---
Q 047959 207 HLNFGSITLPAPPKNNSSPLKNLIFISALHPS----SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLEC--- 279 (478)
Q Consensus 207 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~----~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~--- 279 (478)
+|++.++.....+|.....+.+|++|.+.... .....++..+.+|+.+.+.... . .+...+..+..|.+
T Consensus 622 ~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s---~-~~~e~l~~~~~L~~~~~ 697 (889)
T KOG4658|consen 622 YLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISS---V-LLLEDLLGMTRLRSLLQ 697 (889)
T ss_pred eeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecch---h-HhHhhhhhhHHHHHHhH
Confidence 99997665555556566679999999998775 4445566777788877776552 1 22222333444332
Q ss_pred -EEEEecCcccccCccccccccCCCCceEEEEEeecCCCCCcCcccC------CCCCCeEEEeeCcccCceeEEeCCCCC
Q 047959 280 -LKLVNEGKMRQLSRMILSEYKFPPSLTQLSLSNTELVEDPMPTLEE------LPHLEVLKLKQNSYLERKLACVGCSSF 352 (478)
Q Consensus 280 -L~l~~~~~l~~~p~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~------l~~L~~L~L~~~~~~~~~~~~~~~~~~ 352 (478)
+.+.+ ......+. .++. +.+|+.|.+.+|............ ++++..+.+.++... ..+.. ....
T Consensus 698 ~l~~~~-~~~~~~~~---~~~~-l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~-r~l~~--~~f~ 769 (889)
T KOG4658|consen 698 SLSIEG-CSKRTLIS---SLGS-LGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHML-RDLTW--LLFA 769 (889)
T ss_pred hhhhcc-cccceeec---cccc-ccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccc-cccch--hhcc
Confidence 22222 22223333 5566 788888888888764322221111 223333333322211 11111 2345
Q ss_pred cccceeEEecCCCCCceee
Q 047959 353 PQLKILHLKSMLWLEEWTM 371 (478)
Q Consensus 353 ~~L~~L~L~~~~~l~~l~~ 371 (478)
|+|+.|.+.+|..++.+..
T Consensus 770 ~~L~~l~l~~~~~~e~~i~ 788 (889)
T KOG4658|consen 770 PHLTSLSLVSCRLLEDIIP 788 (889)
T ss_pred CcccEEEEecccccccCCC
Confidence 6677777776666554433
No 24
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.29 E-value=1e-13 Score=127.68 Aligned_cols=119 Identities=18% Similarity=0.167 Sum_probs=94.0
Q ss_pred CCeeeecCccccCCCCeEeEEEecCCCCCc-CCccCCCCCCCceEeecC-CCCCccchh-hhCCCCCcEEeCCCCcCccc
Q 047959 119 DHLALIHCENFCKKFKHLRVLNLGSAVLDQ-YPPGLENLFYLKYLKLNI-PSLKCLPSL-LCTLLNLQTLEMPSSYIDHS 195 (478)
Q Consensus 119 ~~lr~l~~~~~~~~~~~L~~L~L~~~~l~~-lp~~~~~l~~L~~L~l~~-~~i~~lp~~-~~~l~~L~~L~l~~~~l~~l 195 (478)
.+++++ ++..|+.+++||.|||++|.|+. -|+.|.++.+|..|-+.+ |+|+.+|+. +++|..|+.|.+.-|++..+
T Consensus 77 N~I~~i-P~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Ci 155 (498)
T KOG4237|consen 77 NQISSI-PPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCI 155 (498)
T ss_pred CCcccC-ChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcch
Confidence 334443 57788999999999999999994 466699999998887776 899999964 78999999999999988887
Q ss_pred c-hhhhccccCcEEEeeCCCCCCCCCCCCCCCCCCcEeCcccCC
Q 047959 196 P-EDIWMMQKLMHLNFGSITLPAPPKNNSSPLKNLIFISALHPS 238 (478)
Q Consensus 196 p-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 238 (478)
+ +.+..+++|..|.+..|.+.......+..+.+++++.+..+.
T Consensus 156 r~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 156 RQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred hHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCc
Confidence 6 457889999999996665443333357778888888776553
No 25
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.21 E-value=3.6e-13 Score=125.11 Aligned_cols=300 Identities=18% Similarity=0.125 Sum_probs=194.9
Q ss_pred eEeEEEecCCC-CC--cCCccCCCCCCCceEeecCCC-CC--ccchhhhCCCCCcEEeCCCC-cCcccc--hhhhccccC
Q 047959 135 HLRVLNLGSAV-LD--QYPPGLENLFYLKYLKLNIPS-LK--CLPSLLCTLLNLQTLEMPSS-YIDHSP--EDIWMMQKL 205 (478)
Q Consensus 135 ~L~~L~L~~~~-l~--~lp~~~~~l~~L~~L~l~~~~-i~--~lp~~~~~l~~L~~L~l~~~-~l~~lp--~~i~~l~~L 205 (478)
.|+.|.++|+. +. .+-.....+++++.|++.+|. ++ .+-.--..+++|+.|++..| .+.... .....+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 56777777776 22 333334567777777777764 33 22222346778888888777 554432 123467888
Q ss_pred cEEEeeCCCCCC--CCCCCCCCCCCCcEeCcccCCCC----CccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCE
Q 047959 206 MHLNFGSITLPA--PPKNNSSPLKNLIFISALHPSSC----TPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLEC 279 (478)
Q Consensus 206 ~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~ 279 (478)
++|+++.+.... .+......++.++.+...+|.+. +...-+.+..+.++++..|.....+.+...-..+..|+.
T Consensus 219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~ 298 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQV 298 (483)
T ss_pred HHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhh
Confidence 888886654322 12223445556666666666511 111223444455555555543333444444456778888
Q ss_pred EEEEecCcccccCccccccccCCCCceEEEEEeec-CCCCCcCccc-CCCCCCeEEEeeCcccCce-eEEeCCCCCcccc
Q 047959 280 LKLVNEGKMRQLSRMILSEYKFPPSLTQLSLSNTE-LVEDPMPTLE-ELPHLEVLKLKQNSYLERK-LACVGCSSFPQLK 356 (478)
Q Consensus 280 L~l~~~~~l~~~p~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~-~l~~L~~L~L~~~~~~~~~-~~~~~~~~~~~L~ 356 (478)
|..++|..++..+- ..++.-.++|+.|.+.+|+ ++...+..++ +++.|+.+++.++....+. +... ..+++.|+
T Consensus 299 l~~s~~t~~~d~~l--~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sl-s~~C~~lr 375 (483)
T KOG4341|consen 299 LCYSSCTDITDEVL--WALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASL-SRNCPRLR 375 (483)
T ss_pred hcccCCCCCchHHH--HHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhh-ccCCchhc
Confidence 88888777664442 1233337999999999995 5555555554 6789999999877654333 2222 56799999
Q ss_pred eeEEecCCCCCce-----eeCCCcccccceeEEecCCCCCC-CccccCCCCCCCEEEEecCcHHHHHHHHhccCCcccce
Q 047959 357 ILHLKSMLWLEEW-----TMGAGAMPKLESLILNPCAYLRK-LPEEQWCIKSLCKLELHWPQPELRQLLRAFEDMEWRKS 430 (478)
Q Consensus 357 ~L~L~~~~~l~~l-----~~~~~~~~~L~~L~l~~c~~l~~-lp~~l~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~i 430 (478)
+|.+++|..++.- .....++..|+.+.+.+|+.+++ .-+.+..+++||.+++.+|...+.+.+++ ..
T Consensus 376 ~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~-------~~ 448 (483)
T KOG4341|consen 376 VLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISR-------FA 448 (483)
T ss_pred cCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHH-------HH
Confidence 9999999877643 33345788899999999998764 34567789999999999999888888887 46
Q ss_pred eeeeeeEEeeeehh
Q 047959 431 QMVEASYIAAIWLS 444 (478)
Q Consensus 431 ~~lp~~~~~~~~~~ 444 (478)
+|+|.+++++....
T Consensus 449 ~~lp~i~v~a~~a~ 462 (483)
T KOG4341|consen 449 THLPNIKVHAYFAP 462 (483)
T ss_pred hhCccceehhhccC
Confidence 78999988866543
No 26
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=1.4e-11 Score=115.25 Aligned_cols=60 Identities=18% Similarity=0.109 Sum_probs=25.9
Q ss_pred CCCCCceEeecCCCCCccc--hhhhCCCCCcEEeCCCCcC---cccchhhhccccCcEEEeeCCC
Q 047959 155 NLFYLKYLKLNIPSLKCLP--SLLCTLLNLQTLEMPSSYI---DHSPEDIWMMQKLMHLNFGSIT 214 (478)
Q Consensus 155 ~l~~L~~L~l~~~~i~~lp--~~~~~l~~L~~L~l~~~~l---~~lp~~i~~l~~L~~L~l~~~~ 214 (478)
++++|+...|+++.+...+ .....|++++.||++.|-+ ..+-.....+++|+.|+++.|.
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nr 183 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNR 183 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhccccccc
Confidence 3344444444444444333 1334444555555555422 1222233345555555554443
No 27
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.06 E-value=1.3e-10 Score=99.24 Aligned_cols=128 Identities=23% Similarity=0.266 Sum_probs=46.2
Q ss_pred CeEeEEEecCCCCCcCCccCC-CCCCCceEeecCCCCCccchhhhCCCCCcEEeCCCCcCcccchhhh-ccccCcEEEee
Q 047959 134 KHLRVLNLGSAVLDQYPPGLE-NLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSPEDIW-MMQKLMHLNFG 211 (478)
Q Consensus 134 ~~L~~L~L~~~~l~~lp~~~~-~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~-~l~~L~~L~l~ 211 (478)
..++.|+|+++.|+.+.. ++ .+.+|+.|++++|.|+.++ .+..+++|++|++++|.|.++++.+. .+++|++|+++
T Consensus 19 ~~~~~L~L~~n~I~~Ie~-L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~ 96 (175)
T PF14580_consen 19 VKLRELNLRGNQISTIEN-LGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLS 96 (175)
T ss_dssp -----------------S---TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHHH-TT--EEE-T
T ss_pred cccccccccccccccccc-hhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHHhCCcCCEEECc
Confidence 357899999999887654 55 5789999999999999886 57788999999999999999876664 68999999997
Q ss_pred CCCCCCCCCCCCCCCCCCcEeCcccCCCCCccccCCCCCCcEEEEEecC-CcchhhHHHhccCCCCCCEEEEEe
Q 047959 212 SITLPAPPKNNSSPLKNLIFISALHPSSCTPDILGRLPNVQTLRISGDL-SYYHSGVSKSLCQLHKLECLKLVN 284 (478)
Q Consensus 212 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~l~~~l~~~~~L~~L~l~~ 284 (478)
+|.+.. +..+ ..++.+++|+.|++.+|+ ......-...+..+|+|+.||-..
T Consensus 97 ~N~I~~--------l~~l-------------~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 97 NNKISD--------LNEL-------------EPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp TS---S--------CCCC-------------GGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred CCcCCC--------hHHh-------------HHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence 774421 1111 224456677777777664 111122233445566666666443
No 28
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.05 E-value=1.2e-11 Score=112.78 Aligned_cols=244 Identities=18% Similarity=0.190 Sum_probs=134.9
Q ss_pred CCCCeEeEEEecCCCCC-----cCCccCCCCCCCceEeecCC--C-CC-ccchh-------hhCCCCCcEEeCCCCcC--
Q 047959 131 KKFKHLRVLNLGSAVLD-----QYPPGLENLFYLKYLKLNIP--S-LK-CLPSL-------LCTLLNLQTLEMPSSYI-- 192 (478)
Q Consensus 131 ~~~~~L~~L~L~~~~l~-----~lp~~~~~l~~L~~L~l~~~--~-i~-~lp~~-------~~~l~~L~~L~l~~~~l-- 192 (478)
-.+..++.++|+||.+. .+.+.+.+.++|+.-+++.- + .. ++|+. +-.+++|++|+|++|-+
T Consensus 27 ~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~ 106 (382)
T KOG1909|consen 27 EPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGP 106 (382)
T ss_pred cccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCc
Confidence 34566788888888865 44455666777777777652 1 11 45543 23445666666666622
Q ss_pred ccc---chhhhccccCcEEEeeCCCCCCCCCCCCCCCCCCcEeCcccCCCCCccccCCCCCCcEEEEEecC--CcchhhH
Q 047959 193 DHS---PEDIWMMQKLMHLNFGSITLPAPPKNNSSPLKNLIFISALHPSSCTPDILGRLPNVQTLRISGDL--SYYHSGV 267 (478)
Q Consensus 193 ~~l---p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~l~~l~~L~~L~l~~~~--~~~~~~l 267 (478)
..+ -+-+.++..|++|.+.+|.++..--..++. .|+.|. .....+.-++|+++....|. +.....+
T Consensus 107 ~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~--al~~l~-------~~kk~~~~~~Lrv~i~~rNrlen~ga~~~ 177 (382)
T KOG1909|consen 107 KGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR--ALFELA-------VNKKAASKPKLRVFICGRNRLENGGATAL 177 (382)
T ss_pred cchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH--HHHHHH-------HHhccCCCcceEEEEeeccccccccHHHH
Confidence 111 123345555666655322221100000000 011111 11223445677777777775 3344556
Q ss_pred HHhccCCCCCCEEEEEecCcccc-----cCccccccccCCCCceEEEEEeecCCCCC----cCcccCCCCCCeEEEeeCc
Q 047959 268 SKSLCQLHKLECLKLVNEGKMRQ-----LSRMILSEYKFPPSLTQLSLSNTELVEDP----MPTLEELPHLEVLKLKQNS 338 (478)
Q Consensus 268 ~~~l~~~~~L~~L~l~~~~~l~~-----~p~~~~~~~~~~~~L~~L~l~~~~~~~~~----~~~l~~l~~L~~L~L~~~~ 338 (478)
...++..+.|+.+.+.. +.+.. +.. .+.. +++|+.|+|.+|.++... -..+..+++|++|++.+|.
T Consensus 178 A~~~~~~~~leevr~~q-N~I~~eG~~al~e---al~~-~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcl 252 (382)
T KOG1909|consen 178 AEAFQSHPTLEEVRLSQ-NGIRPEGVTALAE---ALEH-CPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCL 252 (382)
T ss_pred HHHHHhccccceEEEec-ccccCchhHHHHH---HHHh-CCcceeeecccchhhhHHHHHHHHHhcccchheeecccccc
Confidence 66677777888888776 44431 111 3444 788888888888765432 2245567778888888777
Q ss_pred ccCceeEEe---CCCCCcccceeEEecCCCCC-----ceeeCCCcccccceeEEecCCC
Q 047959 339 YLERKLACV---GCSSFPQLKILHLKSMLWLE-----EWTMGAGAMPKLESLILNPCAY 389 (478)
Q Consensus 339 ~~~~~~~~~---~~~~~~~L~~L~L~~~~~l~-----~l~~~~~~~~~L~~L~l~~c~~ 389 (478)
+........ --..+|+|+.|.+.+| .++ .+.......|.|+.|.+++|..
T Consensus 253 l~~~Ga~a~~~al~~~~p~L~vl~l~gN-eIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 253 LENEGAIAFVDALKESAPSLEVLELAGN-EITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred cccccHHHHHHHHhccCCCCceeccCcc-hhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 654331110 0234788888888874 343 2223345588899999998875
No 29
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.04 E-value=1.5e-11 Score=111.99 Aligned_cols=245 Identities=23% Similarity=0.247 Sum_probs=162.7
Q ss_pred cCCCCCCCceEeecCCCCC-----ccchhhhCCCCCcEEeCCCCcC----cccchh-------hhccccCcEEEeeCCCC
Q 047959 152 GLENLFYLKYLKLNIPSLK-----CLPSLLCTLLNLQTLEMPSSYI----DHSPED-------IWMMQKLMHLNFGSITL 215 (478)
Q Consensus 152 ~~~~l~~L~~L~l~~~~i~-----~lp~~~~~l~~L~~L~l~~~~l----~~lp~~-------i~~l~~L~~L~l~~~~~ 215 (478)
.+..+..+++++|++|.+. .+.+.+.+.++|+..++++-.. .++|+. +..+++|++|++|.|.+
T Consensus 25 ~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~ 104 (382)
T KOG1909|consen 25 ELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAF 104 (382)
T ss_pred HhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccccc
Confidence 3556778999999999876 4556677788999998887632 344543 34667899999988887
Q ss_pred CCCCCCC----CCCCCCCcEeCcccCC-CCCc-cccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCccc
Q 047959 216 PAPPKNN----SSPLKNLIFISALHPS-SCTP-DILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMR 289 (478)
Q Consensus 216 ~~~~~~~----~~~l~~L~~L~l~~~~-~~~~-~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~ 289 (478)
+...+.. +.++++|++|.+.+|. +... ..++. .|..| .......+.+.|+++.... |++.
T Consensus 105 G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~--al~~l-----------~~~kk~~~~~~Lrv~i~~r-Nrle 170 (382)
T KOG1909|consen 105 GPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR--ALFEL-----------AVNKKAASKPKLRVFICGR-NRLE 170 (382)
T ss_pred CccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH--HHHHH-----------HHHhccCCCcceEEEEeec-cccc
Confidence 7655544 3456667777766664 1110 01110 00000 0223455778999999987 7776
Q ss_pred ccCcc--ccccccCCCCceEEEEEeecCCCCCc----CcccCCCCCCeEEEeeCcccCcee---EEeCCCCCcccceeEE
Q 047959 290 QLSRM--ILSEYKFPPSLTQLSLSNTELVEDPM----PTLEELPHLEVLKLKQNSYLERKL---ACVGCSSFPQLKILHL 360 (478)
Q Consensus 290 ~~p~~--~~~~~~~~~~L~~L~l~~~~~~~~~~----~~l~~l~~L~~L~L~~~~~~~~~~---~~~~~~~~~~L~~L~L 360 (478)
..+.. -..+.. .+.|+.+.++.|.+..... ..+..+++|+.|+|++|.++...- ... +..+++|+.|++
T Consensus 171 n~ga~~~A~~~~~-~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Laka-L~s~~~L~El~l 248 (382)
T KOG1909|consen 171 NGGATALAEAFQS-HPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKA-LSSWPHLRELNL 248 (382)
T ss_pred cccHHHHHHHHHh-ccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHH-hcccchheeecc
Confidence 54431 002444 7899999999998754333 356789999999999999875431 111 566889999999
Q ss_pred ecCCCCCcee-----eCCCcccccceeEEecCCCCCC----CccccCCCCCCCEEEEecCc
Q 047959 361 KSMLWLEEWT-----MGAGAMPKLESLILNPCAYLRK----LPEEQWCIKSLCKLELHWPQ 412 (478)
Q Consensus 361 ~~~~~l~~l~-----~~~~~~~~L~~L~l~~c~~l~~----lp~~l~~l~~L~~L~l~~c~ 412 (478)
.+|.--..-. ......|+|+.|.+.+|..... +...+...+.|+.|++++|.
T Consensus 249 ~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 249 GDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred cccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 9984222111 1123589999999999976432 22345568999999999986
No 30
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.02 E-value=2.2e-10 Score=113.66 Aligned_cols=175 Identities=27% Similarity=0.329 Sum_probs=93.4
Q ss_pred CeEeEEEecCCCCCcCCccCCCCC-CCceEeecCCCCCccchhhhCCCCCcEEeCCCCcCcccchhhhccccCcEEEeeC
Q 047959 134 KHLRVLNLGSAVLDQYPPGLENLF-YLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSPEDIWMMQKLMHLNFGS 212 (478)
Q Consensus 134 ~~L~~L~L~~~~l~~lp~~~~~l~-~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~ 212 (478)
+.++.|++.++.++.++.....+. +|+.|++++|.+..+|..++.+++|+.|++++|.+..+|...+.+++|+.|++
T Consensus 116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~l-- 193 (394)
T COG4886 116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDL-- 193 (394)
T ss_pred cceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheec--
Confidence 445555555555555555444442 55555555555555544455555555555555555555544444555555555
Q ss_pred CCCCCCCCCCCCCCCCCcEeCcccCC-CCCccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCccccc
Q 047959 213 ITLPAPPKNNSSPLKNLIFISALHPS-SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQL 291 (478)
Q Consensus 213 ~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~ 291 (478)
.++. ..++.......+|+++.++++ .....+..+.++.++..+.+.+ +.+..+
T Consensus 194 ----------------------s~N~i~~l~~~~~~~~~L~~l~~~~N---~~~~~~~~~~~~~~l~~l~l~~-n~~~~~ 247 (394)
T COG4886 194 ----------------------SGNKISDLPPEIELLSALEELDLSNN---SIIELLSSLSNLKNLSGLELSN-NKLEDL 247 (394)
T ss_pred ----------------------cCCccccCchhhhhhhhhhhhhhcCC---cceecchhhhhcccccccccCC-ceeeec
Confidence 4444 333333333344555555544 1223333444555555555444 555555
Q ss_pred CccccccccCCCCceEEEEEeecCCCCCcCcccCCCCCCeEEEeeCcccCc
Q 047959 292 SRMILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLER 342 (478)
Q Consensus 292 p~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~ 342 (478)
+. .++. +++++.|++++|.++.... ++.+.+++.|+++++.+...
T Consensus 248 ~~---~~~~-l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~ 292 (394)
T COG4886 248 PE---SIGN-LSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNA 292 (394)
T ss_pred cc---hhcc-ccccceecccccccccccc--ccccCccCEEeccCcccccc
Confidence 55 6666 7777777777777644322 67777777777777666543
No 31
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.97 E-value=1.2e-11 Score=119.32 Aligned_cols=174 Identities=24% Similarity=0.289 Sum_probs=96.5
Q ss_pred CCCeEeEEEecCCCCCcCCccCCCCCCCceEeecCCCCCccchhhhCCCCCcEEeCCCCcCcccchhhhccccCcEEEee
Q 047959 132 KFKHLRVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSPEDIWMMQKLMHLNFG 211 (478)
Q Consensus 132 ~~~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~ 211 (478)
.|..|..+.|+.|.+..+|..++++..|.+|+++.|++..+|..++.|+ |+.|-+++|+++.+|+.++.+++|.+|+.+
T Consensus 96 ~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s 174 (722)
T KOG0532|consen 96 AFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVS 174 (722)
T ss_pred HHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhh
Confidence 3444555555566665666666666666666666666666666655554 666666666666666666655666666664
Q ss_pred CCCCCCCCCCCCCCCCCCcEeCcccCC-CCCccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCcccc
Q 047959 212 SITLPAPPKNNSSPLKNLIFISALHPS-SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQ 290 (478)
Q Consensus 212 ~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~ 290 (478)
.|.+ ..+|..++.+.+|+.|++..+. ...|+++..|+ |.+||+++| ....+|..+.+|.+|++|.|.+ |-+..
T Consensus 175 ~nei-~slpsql~~l~slr~l~vrRn~l~~lp~El~~Lp-Li~lDfScN---kis~iPv~fr~m~~Lq~l~Len-NPLqS 248 (722)
T KOG0532|consen 175 KNEI-QSLPSQLGYLTSLRDLNVRRNHLEDLPEELCSLP-LIRLDFSCN---KISYLPVDFRKMRHLQVLQLEN-NPLQS 248 (722)
T ss_pred hhhh-hhchHHhhhHHHHHHHHHhhhhhhhCCHHHhCCc-eeeeecccC---ceeecchhhhhhhhheeeeecc-CCCCC
Confidence 4432 3455555666666666655555 55555555333 556666654 4445555666666666666654 55554
Q ss_pred cCccccccccCCCCceEEEEEee
Q 047959 291 LSRMILSEYKFPPSLTQLSLSNT 313 (478)
Q Consensus 291 ~p~~~~~~~~~~~~L~~L~l~~~ 313 (478)
-|..+...+. ..-.++|+..-|
T Consensus 249 PPAqIC~kGk-VHIFKyL~~qA~ 270 (722)
T KOG0532|consen 249 PPAQICEKGK-VHIFKYLSTQAC 270 (722)
T ss_pred ChHHHHhccc-eeeeeeecchhc
Confidence 4431111222 333455555555
No 32
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.97 E-value=4.8e-10 Score=111.19 Aligned_cols=129 Identities=29% Similarity=0.416 Sum_probs=101.4
Q ss_pred cCCCC-eEeEEEecCCCCCcCCccCCCCCCCceEeecCCCCCccchhhhCCCCCcEEeCCCCcCcccchhhhccccCcEE
Q 047959 130 CKKFK-HLRVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSPEDIWMMQKLMHL 208 (478)
Q Consensus 130 ~~~~~-~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L 208 (478)
...++ +|+.|++++|.+..+|..+..+++|+.|++++|.+.++|...+.+.+|+.|+++++.+..+|..+.....|+.|
T Consensus 135 ~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l 214 (394)
T COG4886 135 IGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEEL 214 (394)
T ss_pred cccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhh
Confidence 35553 89999999999999988899999999999999999999988878999999999999999999987778889999
Q ss_pred EeeCCCCCCCCCCCCCCCCCCcEeCcccCC-CCCccccCCCCCCcEEEEEec
Q 047959 209 NFGSITLPAPPKNNSSPLKNLIFISALHPS-SCTPDILGRLPNVQTLRISGD 259 (478)
Q Consensus 209 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~ 259 (478)
.+++|. ....+..+.+++++..+.+..+. ...+..++.+++++.|+++++
T Consensus 215 ~~~~N~-~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n 265 (394)
T COG4886 215 DLSNNS-IIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNN 265 (394)
T ss_pred hhcCCc-ceecchhhhhcccccccccCCceeeeccchhccccccceeccccc
Confidence 996664 33455566677777777655444 333445555555555555554
No 33
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=7.7e-11 Score=110.43 Aligned_cols=238 Identities=17% Similarity=0.160 Sum_probs=163.8
Q ss_pred CCccchhhhCCCCCcEEeCCCCcCcccc--hhhhccccCcEEEeeCCCCCC--CCCCCCCCCCCCcEeCcccCC-C--CC
Q 047959 169 LKCLPSLLCTLLNLQTLEMPSSYIDHSP--EDIWMMQKLMHLNFGSITLPA--PPKNNSSPLKNLIFISALHPS-S--CT 241 (478)
Q Consensus 169 i~~lp~~~~~l~~L~~L~l~~~~l~~lp--~~i~~l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~-~--~~ 241 (478)
+..+-.-=.++++|+...+.++.+...+ .....|++++.||++.|-+.. .+-.....+++|+.|+++.+. . ..
T Consensus 110 fDki~akQsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~ 189 (505)
T KOG3207|consen 110 FDKIAAKQSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFIS 189 (505)
T ss_pred HHHHHHHhhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCcc
Confidence 3344444567889999999999887777 367789999999998774432 122234668999999999998 1 11
Q ss_pred ccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCcccccCccccccccCCCCceEEEEEeecCCC-CCc
Q 047959 242 PDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQLSRMILSEYKFPPSLTQLSLSNTELVE-DPM 320 (478)
Q Consensus 242 ~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~p~~~~~~~~~~~~L~~L~l~~~~~~~-~~~ 320 (478)
...-..+++|+.|.++.|. .....+...+..+|+|+.|.+..++.+..... ...- +..|+.|+|++|++.. ...
T Consensus 190 s~~~~~l~~lK~L~l~~CG-ls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~---~~~i-~~~L~~LdLs~N~li~~~~~ 264 (505)
T KOG3207|consen 190 SNTTLLLSHLKQLVLNSCG-LSWKDVQWILLTFPSLEVLYLEANEIILIKAT---STKI-LQTLQELDLSNNNLIDFDQG 264 (505)
T ss_pred ccchhhhhhhheEEeccCC-CCHHHHHHHHHhCCcHHHhhhhcccccceecc---hhhh-hhHHhhccccCCcccccccc
Confidence 1122367899999999996 44666777788999999999998433321111 2233 7789999999998644 334
Q ss_pred CcccCCCCCCeEEEeeCcccCceeEEeC----CCCCcccceeEEecCCCCCceeeC--CCcccccceeEEecCCCCCCCc
Q 047959 321 PTLEELPHLEVLKLKQNSYLERKLACVG----CSSFPQLKILHLKSMLWLEEWTMG--AGAMPKLESLILNPCAYLRKLP 394 (478)
Q Consensus 321 ~~l~~l~~L~~L~L~~~~~~~~~~~~~~----~~~~~~L~~L~L~~~~~l~~l~~~--~~~~~~L~~L~l~~c~~l~~lp 394 (478)
...+.+|.|..|+++.+.+........+ ...|++|+.|++.. +.+..|+.. ...+++|+.|.+-.++.-+.-.
T Consensus 265 ~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~-N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e~~ 343 (505)
T KOG3207|consen 265 YKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISE-NNIRDWRSLNHLRTLENLKHLRITLNYLNKETD 343 (505)
T ss_pred cccccccchhhhhccccCcchhcCCCccchhhhcccccceeeeccc-Cccccccccchhhccchhhhhhccccccccccc
Confidence 5778999999999998876543221100 35799999999998 466666542 3567888888877766433211
Q ss_pred ----cccCCCCCCCEEEEecCc
Q 047959 395 ----EEQWCIKSLCKLELHWPQ 412 (478)
Q Consensus 395 ----~~l~~l~~L~~L~l~~c~ 412 (478)
..+...++|..|+=..|.
T Consensus 344 ~a~~~VIAr~~~l~~LN~~di~ 365 (505)
T KOG3207|consen 344 TAKLLVIARISQLVKLNDVDIS 365 (505)
T ss_pred ceeEEeeeehhhhhhhcccccC
Confidence 134556666666555554
No 34
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.96 E-value=2.5e-11 Score=117.14 Aligned_cols=195 Identities=18% Similarity=0.255 Sum_probs=165.0
Q ss_pred CCCCeEeEEEecCCCCCcCCccCCCCCCCceEeecCCCCCccchhhhCCCCCcEEeCCCCcCcccchhhhccccCcEEEe
Q 047959 131 KKFKHLRVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSPEDIWMMQKLMHLNF 210 (478)
Q Consensus 131 ~~~~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l 210 (478)
-.+..-...|++.|.+..+|..++.+..|..+.+..|.+..+|..++++..|.+|||+.|.+..+|..+..|+ |+.|.+
T Consensus 72 ~~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~ 150 (722)
T KOG0532|consen 72 YDLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIV 150 (722)
T ss_pred ccccchhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEE
Confidence 4566677899999999999999999999999999999999999999999999999999999999999888774 899999
Q ss_pred eCCCCCCCCCCCCCCCCCCcEeCcccCC-CCCccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCccc
Q 047959 211 GSITLPAPPKNNSSPLKNLIFISALHPS-SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMR 289 (478)
Q Consensus 211 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~ 289 (478)
++| ....+|..++.+..|..|+.+.|. ...+..++++.+|+.|.+..+ ....+|..+. .-.|..|+++. |++.
T Consensus 151 sNN-kl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn---~l~~lp~El~-~LpLi~lDfSc-Nkis 224 (722)
T KOG0532|consen 151 SNN-KLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRN---HLEDLPEELC-SLPLIRLDFSC-NKIS 224 (722)
T ss_pred ecC-ccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhh---hhhhCCHHHh-CCceeeeeccc-Ccee
Confidence 555 456789899988999999999888 889999999999999999987 5666777776 44688999995 9999
Q ss_pred ccCccccccccCCCCceEEEEEeecCCCCCcCcc---cCCCCCCeEEEeeC
Q 047959 290 QLSRMILSEYKFPPSLTQLSLSNTELVEDPMPTL---EELPHLEVLKLKQN 337 (478)
Q Consensus 290 ~~p~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l---~~l~~L~~L~L~~~ 337 (478)
.+|. .+.+ +..|+.|-|.+|.+.. .+..+ +...--++|+...|
T Consensus 225 ~iPv---~fr~-m~~Lq~l~LenNPLqS-PPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 225 YLPV---DFRK-MRHLQVLQLENNPLQS-PPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred ecch---hhhh-hhhheeeeeccCCCCC-ChHHHHhccceeeeeeecchhc
Confidence 9999 8999 9999999999999743 33222 33445566666655
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.84 E-value=6.8e-10 Score=99.29 Aligned_cols=218 Identities=23% Similarity=0.176 Sum_probs=138.5
Q ss_pred CCCCceEeecCCC-------CC--ccchhhhCCCCCcEEeCCCCcCcccchhhhccccCcEEEeeCCCCCCCCCCCCCCC
Q 047959 156 LFYLKYLKLNIPS-------LK--CLPSLLCTLLNLQTLEMPSSYIDHSPEDIWMMQKLMHLNFGSITLPAPPKNNSSPL 226 (478)
Q Consensus 156 l~~L~~L~l~~~~-------i~--~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l 226 (478)
+.+|.+|.+++.. |. .+|-.+.-+++|..+.++.|.-+.+-.-...-+.|+.+.+ ++......| .+--.
T Consensus 181 ~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v-~~s~~~~~~-~l~pe 258 (490)
T KOG1259|consen 181 CTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTENIVDIELLKPTLQTICV-HNTTIQDVP-SLLPE 258 (490)
T ss_pred hhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchhheeceeecCchhheeee-ecccccccc-cccch
Confidence 4456666665431 22 4555666678888888888855544333334567888888 333222222 12222
Q ss_pred CCCcEeCcccCC---CCCccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCcccccCccccccccCCC
Q 047959 227 KNLIFISALHPS---SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQLSRMILSEYKFPP 303 (478)
Q Consensus 227 ~~L~~L~l~~~~---~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~p~~~~~~~~~~~ 303 (478)
+.+.......-. +........++.|+++++++| ....+..++.-.|.++.|+++. +.+..+. .+.. ++
T Consensus 259 ~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N---~I~~iDESvKL~Pkir~L~lS~-N~i~~v~----nLa~-L~ 329 (490)
T KOG1259|consen 259 TILADPSGSEPSTSNGSALVSADTWQELTELDLSGN---LITQIDESVKLAPKLRRLILSQ-NRIRTVQ----NLAE-LP 329 (490)
T ss_pred hhhcCccCCCCCccCCceEEecchHhhhhhcccccc---chhhhhhhhhhccceeEEeccc-cceeeeh----hhhh-cc
Confidence 333322222221 334445566778888999987 5566677777888899999987 7777665 3555 88
Q ss_pred CceEEEEEeecCCCCCcCcccCCCCCCeEEEeeCcccCceeEEeCCCCCcccceeEEecCCCCCcee--eCCCcccccce
Q 047959 304 SLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLKSMLWLEEWT--MGAGAMPKLES 381 (478)
Q Consensus 304 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~--~~~~~~~~L~~ 381 (478)
+|+.|++++|.++. ...+-..+.+.+.|.|++|.+.+.. |+..+-+|+.|++++ ++++.+. ..++++|.|+.
T Consensus 330 ~L~~LDLS~N~Ls~-~~Gwh~KLGNIKtL~La~N~iE~LS----GL~KLYSLvnLDl~~-N~Ie~ldeV~~IG~LPCLE~ 403 (490)
T KOG1259|consen 330 QLQLLDLSGNLLAE-CVGWHLKLGNIKTLKLAQNKIETLS----GLRKLYSLVNLDLSS-NQIEELDEVNHIGNLPCLET 403 (490)
T ss_pred cceEeecccchhHh-hhhhHhhhcCEeeeehhhhhHhhhh----hhHhhhhheeccccc-cchhhHHHhcccccccHHHH
Confidence 89999999887643 2223345678888888888764422 256677888888887 4565432 45688899999
Q ss_pred eEEecCCCC
Q 047959 382 LILNPCAYL 390 (478)
Q Consensus 382 L~l~~c~~l 390 (478)
+.+.+||.-
T Consensus 404 l~L~~NPl~ 412 (490)
T KOG1259|consen 404 LRLTGNPLA 412 (490)
T ss_pred HhhcCCCcc
Confidence 999888853
No 36
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=1.6e-11 Score=109.39 Aligned_cols=188 Identities=19% Similarity=0.186 Sum_probs=129.3
Q ss_pred CCCcEeCcccCC---CCCccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCcccccCccccccccCCC
Q 047959 227 KNLIFISALHPS---SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQLSRMILSEYKFPP 303 (478)
Q Consensus 227 ~~L~~L~l~~~~---~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~p~~~~~~~~~~~ 303 (478)
+.||.|+++... ......++.|.+|+.|.+.+. ...+.+...+.+-.+|+.|+++.|+.++...- ...+.. ++
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~--~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~-~ll~~s-cs 260 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGL--RLDDPIVNTIAKNSNLVRLNLSMCSGFTENAL-QLLLSS-CS 260 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhcccccc--ccCcHHHHHHhccccceeeccccccccchhHH-HHHHHh-hh
Confidence 358888877765 344455678888888888888 67778888888888999999988888774321 003455 88
Q ss_pred CceEEEEEeecCCCCCcCc-cc-CCCCCCeEEEeeCccc--CceeEEeCCCCCcccceeEEecCCCCC-ceeeCCCcccc
Q 047959 304 SLTQLSLSNTELVEDPMPT-LE-ELPHLEVLKLKQNSYL--ERKLACVGCSSFPQLKILHLKSMLWLE-EWTMGAGAMPK 378 (478)
Q Consensus 304 ~L~~L~l~~~~~~~~~~~~-l~-~l~~L~~L~L~~~~~~--~~~~~~~~~~~~~~L~~L~L~~~~~l~-~l~~~~~~~~~ 378 (478)
.|..|+|++|.+..+.... +. --++|..|+|+|+.-. ....... ...+|+|.+|+|++|..++ .....+..++.
T Consensus 261 ~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL-~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~ 339 (419)
T KOG2120|consen 261 RLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTL-VRRCPNLVHLDLSDSVMLKNDCFQEFFKFNY 339 (419)
T ss_pred hHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHH-HHhCCceeeeccccccccCchHHHHHHhcch
Confidence 8889999999765543322 12 2367888888875421 1111111 4568999999999988777 33344567899
Q ss_pred cceeEEecCCCCCCCcc---ccCCCCCCCEEEEecCcHH-HHHHHHh
Q 047959 379 LESLILNPCAYLRKLPE---EQWCIKSLCKLELHWPQPE-LRQLLRA 421 (478)
Q Consensus 379 L~~L~l~~c~~l~~lp~---~l~~l~~L~~L~l~~c~~~-~~~~~~~ 421 (478)
|+.|.++.|..+ +|+ .+...|+|.+|++.||-.. .++-+..
T Consensus 340 L~~lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g~vsdt~mel~~e 384 (419)
T KOG2120|consen 340 LQHLSLSRCYDI--IPETLLELNSKPSLVYLDVFGCVSDTTMELLKE 384 (419)
T ss_pred heeeehhhhcCC--ChHHeeeeccCcceEEEEeccccCchHHHHHHH
Confidence 999999999865 333 4567899999999997533 4444433
No 37
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.80 E-value=7.2e-10 Score=99.12 Aligned_cols=225 Identities=18% Similarity=0.167 Sum_probs=152.1
Q ss_pred CCCCeEeEEEecCCC--CC-------cCCccCCCCCCCceEeecCCCCCccchhhhCCCCCcEEeCCCCcCcccchhhhc
Q 047959 131 KKFKHLRVLNLGSAV--LD-------QYPPGLENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSPEDIWM 201 (478)
Q Consensus 131 ~~~~~L~~L~L~~~~--l~-------~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~ 201 (478)
.-+..|.+|-+++.. +. .+|-.+.-+++|+.+.++.|.-+.+..-...-+.|+++.+.++-+...|. +--
T Consensus 179 df~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~~~~-l~p 257 (490)
T KOG1259|consen 179 DFCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQDVPS-LLP 257 (490)
T ss_pred HhhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchhheeceeecCchhheeeeeccccccccc-ccc
Confidence 445567777777654 21 44545667789999999998755444333334689999988875544432 111
Q ss_pred cccCcEEEeeCC-CCCCCCCCCCCCCCCCcEeCcccCC-CCCccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCE
Q 047959 202 MQKLMHLNFGSI-TLPAPPKNNSSPLKNLIFISALHPS-SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLEC 279 (478)
Q Consensus 202 l~~L~~L~l~~~-~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~ 279 (478)
...+....-+.. ...+.....+..-..|++++++.+. ..+-+...-+|.++.|+++.|. .. .+ ..++.+++|+.
T Consensus 258 e~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~--i~-~v-~nLa~L~~L~~ 333 (490)
T KOG1259|consen 258 ETILADPSGSEPSTSNGSALVSADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNR--IR-TV-QNLAELPQLQL 333 (490)
T ss_pred hhhhcCccCCCCCccCCceEEecchHhhhhhccccccchhhhhhhhhhccceeEEeccccc--ee-ee-hhhhhcccceE
Confidence 122222211111 1111222223344578889998887 6666677778999999999983 21 12 23778899999
Q ss_pred EEEEecCcccccCccccccccCCCCceEEEEEeecCCCCCcCcccCCCCCCeEEEeeCcccCceeEEeCCCCCcccceeE
Q 047959 280 LKLVNEGKMRQLSRMILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILH 359 (478)
Q Consensus 280 L~l~~~~~l~~~p~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~ 359 (478)
|++++ +.++.+-. |-.+ +-+.+.|.+++|.+ ..+..++.+-+|..|++++|++....-... ++++|.|+.+.
T Consensus 334 LDLS~-N~Ls~~~G---wh~K-LGNIKtL~La~N~i--E~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~-IG~LPCLE~l~ 405 (490)
T KOG1259|consen 334 LDLSG-NLLAECVG---WHLK-LGNIKTLKLAQNKI--ETLSGLRKLYSLVNLDLSSNQIEELDEVNH-IGNLPCLETLR 405 (490)
T ss_pred eeccc-chhHhhhh---hHhh-hcCEeeeehhhhhH--hhhhhhHhhhhheeccccccchhhHHHhcc-cccccHHHHHh
Confidence 99998 88888876 7777 89999999999986 346677888899999999999865443333 89999999999
Q ss_pred EecCCCCCce
Q 047959 360 LKSMLWLEEW 369 (478)
Q Consensus 360 L~~~~~l~~l 369 (478)
|.+++ +..+
T Consensus 406 L~~NP-l~~~ 414 (490)
T KOG1259|consen 406 LTGNP-LAGS 414 (490)
T ss_pred hcCCC-cccc
Confidence 99854 4433
No 38
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.75 E-value=1.2e-10 Score=108.55 Aligned_cols=259 Identities=18% Similarity=0.158 Sum_probs=180.6
Q ss_pred CCceEeecCCCC---CccchhhhCCCCCcEEeCCCC-cCccc--chhhhccccCcEEEeeCCCCCC--CCCCCCCCCCCC
Q 047959 158 YLKYLKLNIPSL---KCLPSLLCTLLNLQTLEMPSS-YIDHS--PEDIWMMQKLMHLNFGSITLPA--PPKNNSSPLKNL 229 (478)
Q Consensus 158 ~L~~L~l~~~~i---~~lp~~~~~l~~L~~L~l~~~-~l~~l--p~~i~~l~~L~~L~l~~~~~~~--~~~~~~~~l~~L 229 (478)
-||.|.++++.- ..+-.....+++++.|++.+| ++..- -..-..+.+|++|++..+.... .+......+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 689999998753 355555678999999999999 55432 2223478999999995533222 111223567899
Q ss_pred cEeCcccCC----CCCccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCcccccCccccc-cccCCCC
Q 047959 230 IFISALHPS----SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQLSRMILS-EYKFPPS 304 (478)
Q Consensus 230 ~~L~l~~~~----~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~p~~~~~-~~~~~~~ 304 (478)
++|+++.|. ...-....++.+++.+...+|.+...+.+...-..+.-+..+++..|+.++...- | +...+..
T Consensus 219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~---~~i~~~c~~ 295 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDL---WLIACGCHA 295 (483)
T ss_pred HHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHH---HHHhhhhhH
Confidence 999999997 2333445678888888888886555666665556677788888878877774432 2 1222788
Q ss_pred ceEEEEEeecC-CCCCcCcc-cCCCCCCeEEEeeCc-ccCceeEEeCCCCCcccceeEEecCCCCC--ceeeCCCccccc
Q 047959 305 LTQLSLSNTEL-VEDPMPTL-EELPHLEVLKLKQNS-YLERKLACVGCSSFPQLKILHLKSMLWLE--EWTMGAGAMPKL 379 (478)
Q Consensus 305 L~~L~l~~~~~-~~~~~~~l-~~l~~L~~L~L~~~~-~~~~~~~~~~~~~~~~L~~L~L~~~~~l~--~l~~~~~~~~~L 379 (478)
|+.|..++|.. ++.....+ .+.++|+.|.+.+|. +++..+... ..+++.|+.+++..|.... .+.....++|.|
T Consensus 296 lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l-~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~l 374 (483)
T KOG4341|consen 296 LQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTML-GRNCPHLERLDLEECGLITDGTLASLSRNCPRL 374 (483)
T ss_pred hhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhh-hcCChhhhhhcccccceehhhhHhhhccCCchh
Confidence 99999999853 33333344 467999999999886 555444443 5678999999999986554 344444689999
Q ss_pred ceeEEecCCCCCCC-----ccccCCCCCCCEEEEecCcHHHHHHHH
Q 047959 380 ESLILNPCAYLRKL-----PEEQWCIKSLCKLELHWPQPELRQLLR 420 (478)
Q Consensus 380 ~~L~l~~c~~l~~l-----p~~l~~l~~L~~L~l~~c~~~~~~~~~ 420 (478)
+.|.++.|...++. ...-.+...|+.+.+++||......++
T Consensus 375 r~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le 420 (483)
T KOG4341|consen 375 RVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLE 420 (483)
T ss_pred ccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHH
Confidence 99999999877654 334456789999999999944444433
No 39
>PLN03150 hypothetical protein; Provisional
Probab=98.64 E-value=6.6e-08 Score=100.74 Aligned_cols=89 Identities=20% Similarity=0.290 Sum_probs=50.2
Q ss_pred EeEEEecCCCCC-cCCccCCCCCCCceEeecCCCCC-ccchhhhCCCCCcEEeCCCCcCc-ccchhhhccccCcEEEeeC
Q 047959 136 LRVLNLGSAVLD-QYPPGLENLFYLKYLKLNIPSLK-CLPSLLCTLLNLQTLEMPSSYID-HSPEDIWMMQKLMHLNFGS 212 (478)
Q Consensus 136 L~~L~L~~~~l~-~lp~~~~~l~~L~~L~l~~~~i~-~lp~~~~~l~~L~~L~l~~~~l~-~lp~~i~~l~~L~~L~l~~ 212 (478)
++.|+|+++.+. .+|..++.+++|+.|+|++|.+. .+|..++.+++|+.|++++|.+. .+|+.++++++|++|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 555555555554 55555555556666666555555 55555555556666666555443 4555555555666666555
Q ss_pred CCCCCCCCCCCC
Q 047959 213 ITLPAPPKNNSS 224 (478)
Q Consensus 213 ~~~~~~~~~~~~ 224 (478)
|.+.+.+|..+.
T Consensus 500 N~l~g~iP~~l~ 511 (623)
T PLN03150 500 NSLSGRVPAALG 511 (623)
T ss_pred CcccccCChHHh
Confidence 555555554443
No 40
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=3.1e-10 Score=101.35 Aligned_cols=200 Identities=21% Similarity=0.186 Sum_probs=113.7
Q ss_pred CCcEEeCCCCcC--cccchhhhccccCcEEEeeCCCCCCCCCCCCCCCCCCcEeCcccCCCCCccccCCCCCCcEEEEEe
Q 047959 181 NLQTLEMPSSYI--DHSPEDIWMMQKLMHLNFGSITLPAPPKNNSSPLKNLIFISALHPSSCTPDILGRLPNVQTLRISG 258 (478)
Q Consensus 181 ~L~~L~l~~~~l--~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~l~~l~~L~~L~l~~ 258 (478)
.||+||++...+ ..+-.-+..|.+|+.|.+.++.+...+. ..+..-.+|+.|+++.
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~----------------------~~iAkN~~L~~lnlsm 243 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIV----------------------NTIAKNSNLVRLNLSM 243 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHH----------------------HHHhccccceeecccc
Confidence 366666666544 2233334555566665554444333333 3344445555555555
Q ss_pred cCCcchhhHHHhccCCCCCCEEEEEecCcccccCccccccccCCCCceEEEEEeec--CCCCCcCcc-cCCCCCCeEEEe
Q 047959 259 DLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQLSRMILSEYKFPPSLTQLSLSNTE--LVEDPMPTL-EELPHLEVLKLK 335 (478)
Q Consensus 259 ~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~p~~~~~~~~~~~~L~~L~l~~~~--~~~~~~~~l-~~l~~L~~L~L~ 335 (478)
++......+.-.+.+++.|..|++++|...+..-.+ .+...-++|+.|+|+++. +.......+ ..+|+|..|+|+
T Consensus 244 ~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv--~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLS 321 (419)
T KOG2120|consen 244 CSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTV--AVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLS 321 (419)
T ss_pred ccccchhHHHHHHHhhhhHhhcCchHhhccchhhhH--HHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccc
Confidence 542333344445667777777777776655422110 222224688888888874 222333333 578888888888
Q ss_pred eCcccCceeEEeCCCCCcccceeEEecCCCCC-ceeeCCCcccccceeEEecCCCCCCCccccCCCCCCCE
Q 047959 336 QNSYLERKLACVGCSSFPQLKILHLKSMLWLE-EWTMGAGAMPKLESLILNPCAYLRKLPEEQWCIKSLCK 405 (478)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~-~l~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~ 405 (478)
+|.......... +..|+.|++|.++.|-.+. .--......|+|..|++.+|-.-+...-....+++|+.
T Consensus 322 D~v~l~~~~~~~-~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~vsdt~mel~~e~~~~lki 391 (419)
T KOG2120|consen 322 DSVMLKNDCFQE-FFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCVSDTTMELLKEMLSHLKI 391 (419)
T ss_pred cccccCchHHHH-HHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccccCchHHHHHHHhCccccc
Confidence 776433221111 5678889999998887665 22234578899999999988644433223344555553
No 41
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.59 E-value=3.2e-08 Score=84.66 Aligned_cols=106 Identities=24% Similarity=0.239 Sum_probs=52.4
Q ss_pred CCCCeEeEEEecCCCCCcCCccCCCCCCCceEeecCCCCCccchhh-hCCCCCcEEeCCCCcCcccc--hhhhccccCcE
Q 047959 131 KKFKHLRVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLPSLL-CTLLNLQTLEMPSSYIDHSP--EDIWMMQKLMH 207 (478)
Q Consensus 131 ~~~~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~-~~l~~L~~L~l~~~~l~~lp--~~i~~l~~L~~ 207 (478)
..+.+|++|++++|.++.+.. +..+++|+.|++++|.|+.+...+ ..+++|++|++++|+|..+. ..+..+++|++
T Consensus 39 ~~l~~L~~L~Ls~N~I~~l~~-l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~ 117 (175)
T PF14580_consen 39 ATLDKLEVLDLSNNQITKLEG-LPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRV 117 (175)
T ss_dssp TT-TT--EEE-TTS--S--TT-----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--E
T ss_pred hhhcCCCEEECCCCCCccccC-ccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcce
Confidence 467889999999999998865 888999999999999999987665 46899999999999886664 45778999999
Q ss_pred EEeeCCCCCCCCCC----CCCCCCCCcEeCcccCC
Q 047959 208 LNFGSITLPAPPKN----NSSPLKNLIFISALHPS 238 (478)
Q Consensus 208 L~l~~~~~~~~~~~----~~~~l~~L~~L~l~~~~ 238 (478)
|++.+|..... +. .+..+++|+.|+.....
T Consensus 118 L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD~~~V~ 151 (175)
T PF14580_consen 118 LSLEGNPVCEK-KNYRLFVIYKLPSLKVLDGQDVT 151 (175)
T ss_dssp EE-TT-GGGGS-TTHHHHHHHH-TT-SEETTEETT
T ss_pred eeccCCcccch-hhHHHHHHHHcChhheeCCEEcc
Confidence 99977754321 11 13456777777755544
No 42
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.51 E-value=9.2e-08 Score=67.06 Aligned_cols=57 Identities=30% Similarity=0.497 Sum_probs=32.3
Q ss_pred eEeEEEecCCCCCcCCcc-CCCCCCCceEeecCCCCCccch-hhhCCCCCcEEeCCCCc
Q 047959 135 HLRVLNLGSAVLDQYPPG-LENLFYLKYLKLNIPSLKCLPS-LLCTLLNLQTLEMPSSY 191 (478)
Q Consensus 135 ~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~ 191 (478)
+|++|++++|.++.+|.. +.++++|++|++++|.+..+|+ .+.++++|++|++++|.
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 455666666666655543 5556666666666666655443 34555555555555553
No 43
>PLN03150 hypothetical protein; Provisional
Probab=98.41 E-value=5.6e-07 Score=93.87 Aligned_cols=101 Identities=16% Similarity=0.281 Sum_probs=60.2
Q ss_pred CcEEeCCCCcC-cccchhhhccccCcEEEeeCCCCCCCCCCCCCCCCCCcEeCcccCC--CCCccccCCCCCCcEEEEEe
Q 047959 182 LQTLEMPSSYI-DHSPEDIWMMQKLMHLNFGSITLPAPPKNNSSPLKNLIFISALHPS--SCTPDILGRLPNVQTLRISG 258 (478)
Q Consensus 182 L~~L~l~~~~l-~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~ 258 (478)
++.|+|+++.+ ..+|..+..+++|+.|++++|.+.+.+|..++.+++|+.|++.+|. +..|..++++++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 55666666644 3456666666666666666666555666666666666666666665 45556666666666666666
Q ss_pred cCCcchhhHHHhccCC-CCCCEEEEEe
Q 047959 259 DLSYYHSGVSKSLCQL-HKLECLKLVN 284 (478)
Q Consensus 259 ~~~~~~~~l~~~l~~~-~~L~~L~l~~ 284 (478)
| ...+.+|..+... .++..+++.+
T Consensus 500 N--~l~g~iP~~l~~~~~~~~~l~~~~ 524 (623)
T PLN03150 500 N--SLSGRVPAALGGRLLHRASFNFTD 524 (623)
T ss_pred C--cccccCChHHhhccccCceEEecC
Confidence 6 4445555555432 3455666654
No 44
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.36 E-value=2.9e-07 Score=64.53 Aligned_cols=58 Identities=22% Similarity=0.312 Sum_probs=50.0
Q ss_pred CCCceEeecCCCCCccch-hhhCCCCCcEEeCCCCcCcccch-hhhccccCcEEEeeCCC
Q 047959 157 FYLKYLKLNIPSLKCLPS-LLCTLLNLQTLEMPSSYIDHSPE-DIWMMQKLMHLNFGSIT 214 (478)
Q Consensus 157 ~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~ 214 (478)
++|++|++++|.+..+|. .+.++++|++|++++|.+..+++ .+..+++|++|++++|.
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 478999999999998885 67889999999999999988874 57899999999997764
No 45
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.33 E-value=4.4e-08 Score=97.46 Aligned_cols=242 Identities=23% Similarity=0.252 Sum_probs=144.9
Q ss_pred CCCeEeEEEecCCCCCcCCccCCCCCCCceEeecCCCCCccchhhhCCCCCcEEeCCCCcCcccchhhhccccCcEEEee
Q 047959 132 KFKHLRVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSPEDIWMMQKLMHLNFG 211 (478)
Q Consensus 132 ~~~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~ 211 (478)
.+..+..++++.+.+...-..+..+.+|+.|++.+|.|..+...+..+.+|++|++++|.|.++. ++..++.|+.|+++
T Consensus 70 ~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~ 148 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLS 148 (414)
T ss_pred HhHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheecccccccccc-chhhccchhhheec
Confidence 34556666677777776555577788888888888888877655777888888888888888874 36777778888887
Q ss_pred CCCCCCCCCCCCCCCCCCcEeCcccCCCCCccc--cCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCccc
Q 047959 212 SITLPAPPKNNSSPLKNLIFISALHPSSCTPDI--LGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMR 289 (478)
Q Consensus 212 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~ 289 (478)
+|.+. -..++..+++|+.+++.++....... +..+.+++.+.+.++. ... ...+..+..+..+++.. +.+.
T Consensus 149 ~N~i~--~~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~--i~~--i~~~~~~~~l~~~~l~~-n~i~ 221 (414)
T KOG0531|consen 149 GNLIS--DISGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNS--IRE--IEGLDLLKKLVLLSLLD-NKIS 221 (414)
T ss_pred cCcch--hccCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCc--hhc--ccchHHHHHHHHhhccc-ccce
Confidence 76443 22345557788888877776222222 4677788888888774 110 01111222333334443 4444
Q ss_pred ccCccccccccCCCC--ceEEEEEeecCCCCCcCcccCCCCCCeEEEeeCcccCceeEEeCCCCCcccceeEEecCCCCC
Q 047959 290 QLSRMILSEYKFPPS--LTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLKSMLWLE 367 (478)
Q Consensus 290 ~~p~~~~~~~~~~~~--L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~ 367 (478)
.+- .+.. +.. |+.+++.++.+... ...+..+..+..|++.++.+..... ....+.+..+.........
T Consensus 222 ~~~----~l~~-~~~~~L~~l~l~~n~i~~~-~~~~~~~~~l~~l~~~~n~~~~~~~----~~~~~~~~~~~~~~~~~~~ 291 (414)
T KOG0531|consen 222 KLE----GLNE-LVMLHLRELYLSGNRISRS-PEGLENLKNLPVLDLSSNRISNLEG----LERLPKLSELWLNDNKLAL 291 (414)
T ss_pred ecc----Cccc-chhHHHHHHhcccCccccc-cccccccccccccchhhcccccccc----ccccchHHHhccCcchhcc
Confidence 332 1222 333 78888888875432 1456667777788887666554331 3344555555555432211
Q ss_pred ---ceeeC-CCcccccceeEEecCCCCC
Q 047959 368 ---EWTMG-AGAMPKLESLILNPCAYLR 391 (478)
Q Consensus 368 ---~l~~~-~~~~~~L~~L~l~~c~~l~ 391 (478)
..... ....+.++.+.+..++.-.
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (414)
T KOG0531|consen 292 SEAISQEYITSAAPTLVTLTLELNPIRK 319 (414)
T ss_pred hhhhhccccccccccccccccccCcccc
Confidence 11111 3456777777777776544
No 46
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.30 E-value=4.7e-08 Score=97.26 Aligned_cols=220 Identities=22% Similarity=0.191 Sum_probs=143.3
Q ss_pred cCCCCeEeEEEecCCCCCcCCccCCCCCCCceEeecCCCCCccchhhhCCCCCcEEeCCCCcCcccchhhhccccCcEEE
Q 047959 130 CKKFKHLRVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSPEDIWMMQKLMHLN 209 (478)
Q Consensus 130 ~~~~~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~ 209 (478)
...++.|..|++.+|.+..+...+..+++|++|++++|.|+.+. .+..+..|+.|++.+|.+..+.. +..++.|+.++
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N~i~~~~~-~~~l~~L~~l~ 168 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGNLISDISG-LESLKSLKLLD 168 (414)
T ss_pred cccccceeeeeccccchhhcccchhhhhcchheecccccccccc-chhhccchhhheeccCcchhccC-Cccchhhhccc
Confidence 35678899999999999988777888999999999999999875 56778889999999998888854 56689999999
Q ss_pred eeCCCCCCCCC-CCCCCCCCCcEeCcccCCCCCccccCCCCCCcEEEEEecCCcchhhHHHhccCCC--CCCEEEEEecC
Q 047959 210 FGSITLPAPPK-NNSSPLKNLIFISALHPSSCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLH--KLECLKLVNEG 286 (478)
Q Consensus 210 l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~--~L~~L~l~~~~ 286 (478)
+++|.....-+ . ...+.+++.+.+.++.......+..+..+..+++..+.-... ..+..+. +|+.+.+++ +
T Consensus 169 l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~~~~~~~~l~~~~l~~n~i~~~----~~l~~~~~~~L~~l~l~~-n 242 (414)
T KOG0531|consen 169 LSYNRIVDIENDE-LSELISLEELDLGGNSIREIEGLDLLKKLVLLSLLDNKISKL----EGLNELVMLHLRELYLSG-N 242 (414)
T ss_pred CCcchhhhhhhhh-hhhccchHHHhccCCchhcccchHHHHHHHHhhcccccceec----cCcccchhHHHHHHhccc-C
Confidence 97776543222 1 467788888888877633333333444444444444420000 1111222 377888887 7
Q ss_pred cccccCccccccccCCCCceEEEEEeecCCCCCcCcccCCCCCCeEEEeeCcccCcee--EEeCCCCCcccceeEEecC
Q 047959 287 KMRQLSRMILSEYKFPPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKL--ACVGCSSFPQLKILHLKSM 363 (478)
Q Consensus 287 ~l~~~p~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~--~~~~~~~~~~L~~L~L~~~ 363 (478)
.+...+. .+.. +..+..|++.++.+.. ...+...+.+..+....+.+....- ...+....+.++...+...
T Consensus 243 ~i~~~~~---~~~~-~~~l~~l~~~~n~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (414)
T KOG0531|consen 243 RISRSPE---GLEN-LKNLPVLDLSSNRISN--LEGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELN 315 (414)
T ss_pred ccccccc---cccc-cccccccchhhccccc--cccccccchHHHhccCcchhcchhhhhccccccccccccccccccC
Confidence 6666644 5666 7888888888887533 3334455566666666555432110 0000344566666666653
No 47
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.24 E-value=1e-07 Score=85.46 Aligned_cols=84 Identities=14% Similarity=0.170 Sum_probs=49.2
Q ss_pred CCCCCeEEEeeCcccCceeEEeCCCCCcccceeEEecCCCCCceee--CCCcccccceeEEecCCCCCCCcc------cc
Q 047959 326 LPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLKSMLWLEEWTM--GAGAMPKLESLILNPCAYLRKLPE------EQ 397 (478)
Q Consensus 326 l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~--~~~~~~~L~~L~l~~c~~l~~lp~------~l 397 (478)
+|++..+-+..|.+....-... ...+|.+-.|+|.. +++.+|.. ....||.|..|.+.++|..+.+-. -+
T Consensus 198 Fpnv~sv~v~e~PlK~~s~ek~-se~~p~~~~LnL~~-~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llI 275 (418)
T KOG2982|consen 198 FPNVNSVFVCEGPLKTESSEKG-SEPFPSLSCLNLGA-NNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLI 275 (418)
T ss_pred cccchheeeecCcccchhhccc-CCCCCcchhhhhcc-cccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEE
Confidence 3555555555554433332222 45566666666665 45665542 235678888888888776654422 35
Q ss_pred CCCCCCCEEEEecC
Q 047959 398 WCIKSLCKLELHWP 411 (478)
Q Consensus 398 ~~l~~L~~L~l~~c 411 (478)
+++++++.|+=+..
T Consensus 276 aRL~~v~vLNGskI 289 (418)
T KOG2982|consen 276 ARLTKVQVLNGSKI 289 (418)
T ss_pred eeccceEEecCccc
Confidence 67888888876544
No 48
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.19 E-value=2e-07 Score=83.71 Aligned_cols=85 Identities=22% Similarity=0.243 Sum_probs=52.4
Q ss_pred ccCCCCeEeEEEecCCCCC---cCCccCCCCCCCceEeecCCCCCccchhh-hCCCCCcEEeCCCCcC--cccchhhhcc
Q 047959 129 FCKKFKHLRVLNLGSAVLD---QYPPGLENLFYLKYLKLNIPSLKCLPSLL-CTLLNLQTLEMPSSYI--DHSPEDIWMM 202 (478)
Q Consensus 129 ~~~~~~~L~~L~L~~~~l~---~lp~~~~~l~~L~~L~l~~~~i~~lp~~~-~~l~~L~~L~l~~~~l--~~lp~~i~~l 202 (478)
|-..++.++.|||.+|.++ ++..-+.++++|++|++++|++..-..+. ..+.+|++|-+.++.+ ......+..+
T Consensus 66 ~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~l 145 (418)
T KOG2982|consen 66 FGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDL 145 (418)
T ss_pred HHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcc
Confidence 3366777777788777776 33344557777788887777654211121 3456777777777743 4444455666
Q ss_pred ccCcEEEeeCC
Q 047959 203 QKLMHLNFGSI 213 (478)
Q Consensus 203 ~~L~~L~l~~~ 213 (478)
++++.|+++.|
T Consensus 146 P~vtelHmS~N 156 (418)
T KOG2982|consen 146 PKVTELHMSDN 156 (418)
T ss_pred hhhhhhhhccc
Confidence 67777766555
No 49
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.18 E-value=2.2e-06 Score=55.07 Aligned_cols=39 Identities=31% Similarity=0.381 Sum_probs=24.1
Q ss_pred CCceEeecCCCCCccchhhhCCCCCcEEeCCCCcCcccc
Q 047959 158 YLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSP 196 (478)
Q Consensus 158 ~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp 196 (478)
+|++|++++|+|+.+|..+++|++|++|++++|.+.+++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 566666666666666666666666666666666665554
No 50
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.16 E-value=2.3e-07 Score=82.26 Aligned_cols=247 Identities=17% Similarity=0.137 Sum_probs=151.2
Q ss_pred CCCeEeEEEecCCCCC-----cCCccCCCCCCCceEeecCC--C-CC-ccch-------hhhCCCCCcEEeCCCCcC-cc
Q 047959 132 KFKHLRVLNLGSAVLD-----QYPPGLENLFYLKYLKLNIP--S-LK-CLPS-------LLCTLLNLQTLEMPSSYI-DH 194 (478)
Q Consensus 132 ~~~~L~~L~L~~~~l~-----~lp~~~~~l~~L~~L~l~~~--~-i~-~lp~-------~~~~l~~L~~L~l~~~~l-~~ 194 (478)
.+..+..++||||.|. .+...|.+-.+|+..+++.- + .+ .+|+ .+.+|++|++.+++.|-+ ..
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 3778899999999976 55555777788888888762 1 11 4443 356788899999988833 34
Q ss_pred cc----hhhhccccCcEEEeeCCCCCCCCCCCCCCCCCCcEeCcccCCCCCccccCCCCCCcEEEEEecC--CcchhhHH
Q 047959 195 SP----EDIWMMQKLMHLNFGSITLPAPPKNNSSPLKNLIFISALHPSSCTPDILGRLPNVQTLRISGDL--SYYHSGVS 268 (478)
Q Consensus 195 lp----~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~l~~l~~L~~L~l~~~~--~~~~~~l~ 268 (478)
.| +.|++-+.|.||.+++|.++..--..+++ .|++|- ......+-|.|+...+..|. +.......
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigk--al~~la-------~nKKaa~kp~Le~vicgrNRlengs~~~~a 178 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGK--ALFHLA-------YNKKAADKPKLEVVICGRNRLENGSKELSA 178 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecCCCCccchhHHHH--HHHHHH-------HHhhhccCCCceEEEeccchhccCcHHHHH
Confidence 44 34566788888888555332211111221 122221 11223456778888887775 22333444
Q ss_pred HhccCCCCCCEEEEEecCcccc--cCcc-ccccccCCCCceEEEEEeecCCCCCcC----cccCCCCCCeEEEeeCcccC
Q 047959 269 KSLCQLHKLECLKLVNEGKMRQ--LSRM-ILSEYKFPPSLTQLSLSNTELVEDPMP----TLEELPHLEVLKLKQNSYLE 341 (478)
Q Consensus 269 ~~l~~~~~L~~L~l~~~~~l~~--~p~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~----~l~~l~~L~~L~L~~~~~~~ 341 (478)
..+..-.+|+.+.+.. |.+.. +... +..+.. +++|+.|+|.+|.++..... .+...+.|++|.+.+|-++.
T Consensus 179 ~~l~sh~~lk~vki~q-NgIrpegv~~L~~~gl~y-~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~ 256 (388)
T COG5238 179 ALLESHENLKEVKIQQ-NGIRPEGVTMLAFLGLFY-SHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSN 256 (388)
T ss_pred HHHHhhcCceeEEeee-cCcCcchhHHHHHHHHHH-hCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhcc
Confidence 5555667899999987 65541 1110 113344 88999999999987654332 34567889999998887664
Q ss_pred ceeEEe----CCCCCcccceeEEecCCCCCcee-------eCCCcccccceeEEecCCC
Q 047959 342 RKLACV----GCSSFPQLKILHLKSMLWLEEWT-------MGAGAMPKLESLILNPCAY 389 (478)
Q Consensus 342 ~~~~~~----~~~~~~~L~~L~L~~~~~l~~l~-------~~~~~~~~L~~L~l~~c~~ 389 (478)
...... .-..+|+|..|...++..-.... ...+++|-|..|.+.+|..
T Consensus 257 ~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~ 315 (388)
T COG5238 257 EGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRI 315 (388)
T ss_pred ccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcc
Confidence 332110 02346788888887743222111 1236789999999988864
No 51
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.11 E-value=5.6e-07 Score=93.73 Aligned_cols=124 Identities=18% Similarity=0.222 Sum_probs=73.5
Q ss_pred CeEeEEEecCCC-CC-cCCccCC-CCCCCceEeecCCCCC--ccchhhhCCCCCcEEeCCCCcCcccchhhhccccCcEE
Q 047959 134 KHLRVLNLGSAV-LD-QYPPGLE-NLFYLKYLKLNIPSLK--CLPSLLCTLLNLQTLEMPSSYIDHSPEDIWMMQKLMHL 208 (478)
Q Consensus 134 ~~L~~L~L~~~~-l~-~lp~~~~-~l~~L~~L~l~~~~i~--~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L 208 (478)
.+|+.||++|.. +. .-|..++ .+|+|+.|.+.+-.+. ++-.-..++++|..||++++++..+ .++++|++|+.|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence 567788887766 32 4444444 5678888888775544 3444456677888888888877777 667788888887
Q ss_pred EeeCCC-CCC-CCCCCCCCCCCCcEeCcccCC-CC-------CccccCCCCCCcEEEEEec
Q 047959 209 NFGSIT-LPA-PPKNNSSPLKNLIFISALHPS-SC-------TPDILGRLPNVQTLRISGD 259 (478)
Q Consensus 209 ~l~~~~-~~~-~~~~~~~~l~~L~~L~l~~~~-~~-------~~~~l~~l~~L~~L~l~~~ 259 (478)
.+ .|- +.. ..-..+-++++|+.|+++... .. ..+.-..+|+|+.||.++.
T Consensus 201 ~m-rnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgT 260 (699)
T KOG3665|consen 201 SM-RNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGT 260 (699)
T ss_pred hc-cCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCc
Confidence 77 331 110 001123455666666665554 11 1122234667777777766
No 52
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.08 E-value=7.2e-07 Score=79.17 Aligned_cols=222 Identities=17% Similarity=0.167 Sum_probs=128.3
Q ss_pred CCCCeEeEEEecCCCCC----cCC-------ccCCCCCCCceEeecCCCCC-ccchh----hhCCCCCcEEeCCCCcCcc
Q 047959 131 KKFKHLRVLNLGSAVLD----QYP-------PGLENLFYLKYLKLNIPSLK-CLPSL----LCTLLNLQTLEMPSSYIDH 194 (478)
Q Consensus 131 ~~~~~L~~L~L~~~~l~----~lp-------~~~~~l~~L~~L~l~~~~i~-~lp~~----~~~l~~L~~L~l~~~~l~~ 194 (478)
.+-++|++.+++.-... .++ ..+-+|++|+..+|+.|.+. +.|+. ++.-..|..|.+.+|.++.
T Consensus 55 a~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp 134 (388)
T COG5238 55 ANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGP 134 (388)
T ss_pred hhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCc
Confidence 56788899888865422 333 33568899999999999887 55543 5677899999999997765
Q ss_pred cch-hhhccccCcEEEeeCCCCCCCCCCCCCCCCCCcEeCcccCC-CC-----CccccCCCCCCcEEEEEecCC--c-ch
Q 047959 195 SPE-DIWMMQKLMHLNFGSITLPAPPKNNSSPLKNLIFISALHPS-SC-----TPDILGRLPNVQTLRISGDLS--Y-YH 264 (478)
Q Consensus 195 lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~-----~~~~l~~l~~L~~L~l~~~~~--~-~~ 264 (478)
+.. .|++ .|.+|-. |. -..+-+.|++.....++ .. ....+..-.+|+.+.+..|.. . ..
T Consensus 135 ~aG~rigk--al~~la~--nK-------Kaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~ 203 (388)
T COG5238 135 IAGGRIGK--ALFHLAY--NK-------KAADKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVT 203 (388)
T ss_pred cchhHHHH--HHHHHHH--Hh-------hhccCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhH
Confidence 532 1221 1111111 10 11122334444333333 11 112233335777777777741 1 11
Q ss_pred hhHHHhccCCCCCCEEEEEecCcccc-----cCccccccccCCCCceEEEEEeecCCCCCcCcc------cCCCCCCeEE
Q 047959 265 SGVSKSLCQLHKLECLKLVNEGKMRQ-----LSRMILSEYKFPPSLTQLSLSNTELVEDPMPTL------EELPHLEVLK 333 (478)
Q Consensus 265 ~~l~~~l~~~~~L~~L~l~~~~~l~~-----~p~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l------~~l~~L~~L~ 333 (478)
.-+...+..+.+|+.|+++. |.++. +.. .+.. .+.|+.|.+.+|-++......+ ...|+|..|.
T Consensus 204 ~L~~~gl~y~~~LevLDlqD-Ntft~~gS~~La~---al~~-W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~ 278 (388)
T COG5238 204 MLAFLGLFYSHSLEVLDLQD-NTFTLEGSRYLAD---ALCE-WNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLP 278 (388)
T ss_pred HHHHHHHHHhCcceeeeccc-cchhhhhHHHHHH---Hhcc-cchhhhccccchhhccccHHHHHHHhhhhcCCCccccc
Confidence 12233455678888888887 65552 222 2344 5678888888887655433321 2357888888
Q ss_pred EeeCcccCceeEEeC-----CCCCcccceeEEecCCCCCce
Q 047959 334 LKQNSYLERKLACVG-----CSSFPQLKILHLKSMLWLEEW 369 (478)
Q Consensus 334 L~~~~~~~~~~~~~~-----~~~~~~L~~L~L~~~~~l~~l 369 (478)
..+|...+..+.... .+..|-|..|.+.+ +.+.+.
T Consensus 279 ~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ng-Nr~~E~ 318 (388)
T COG5238 279 GDYNERRGGIILDISLNEFEQDAVPLLVDLERNG-NRIKEL 318 (388)
T ss_pred cchhhhcCceeeeechhhhhhcccHHHHHHHHcc-CcchhH
Confidence 887776554443210 35678888888887 345433
No 53
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.06 E-value=3.7e-06 Score=54.03 Aligned_cols=40 Identities=30% Similarity=0.452 Sum_probs=35.4
Q ss_pred CeEeEEEecCCCCCcCCccCCCCCCCceEeecCCCCCccc
Q 047959 134 KHLRVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLP 173 (478)
Q Consensus 134 ~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp 173 (478)
++|++|++++|.++.+|..++++++|++|++++|.++.++
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 4689999999999999988999999999999999999776
No 54
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.93 E-value=1.7e-07 Score=93.63 Aligned_cols=125 Identities=25% Similarity=0.242 Sum_probs=88.7
Q ss_pred CCcEeCcccCC-CCCccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCcccccCccccccccCCCCce
Q 047959 228 NLIFISALHPS-SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQLSRMILSEYKFPPSLT 306 (478)
Q Consensus 228 ~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~p~~~~~~~~~~~~L~ 306 (478)
.|.+.+.+.|. ..+-..+.-++.|+.|+++.|. ... ...+..+++|++|+|+. |.+..+|.. .... + .|.
T Consensus 165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk--~~~--v~~Lr~l~~LkhLDlsy-N~L~~vp~l--~~~g-c-~L~ 235 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNK--FTK--VDNLRRLPKLKHLDLSY-NCLRHVPQL--SMVG-C-KLQ 235 (1096)
T ss_pred hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhh--hhh--hHHHHhccccccccccc-chhcccccc--chhh-h-hhe
Confidence 34555555554 5555667778889999999872 322 22677889999999998 888888851 2222 3 499
Q ss_pred EEEEEeecCCCCCcCcccCCCCCCeEEEeeCcccCceeEEeCCCCCcccceeEEecCC
Q 047959 307 QLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLKSML 364 (478)
Q Consensus 307 ~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~ 364 (478)
.|.+++|.++ .+..+.++.+|+.|++++|.+.+..-... ++.+..|+.|+|.+++
T Consensus 236 ~L~lrnN~l~--tL~gie~LksL~~LDlsyNll~~hseL~p-LwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 236 LLNLRNNALT--TLRGIENLKSLYGLDLSYNLLSEHSELEP-LWSLSSLIVLWLEGNP 290 (1096)
T ss_pred eeeecccHHH--hhhhHHhhhhhhccchhHhhhhcchhhhH-HHHHHHHHHHhhcCCc
Confidence 9999999864 35567888899999999888766443322 5677888888888865
No 55
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.90 E-value=3e-05 Score=74.83 Aligned_cols=69 Identities=19% Similarity=0.203 Sum_probs=49.5
Q ss_pred CCCeEeEEEecCCCCCcCCccCCCCCCCceEeecCC-CCCccchhhhCCCCCcEEeCCCC-cCcccchhhhccccCcEEE
Q 047959 132 KFKHLRVLNLGSAVLDQYPPGLENLFYLKYLKLNIP-SLKCLPSLLCTLLNLQTLEMPSS-YIDHSPEDIWMMQKLMHLN 209 (478)
Q Consensus 132 ~~~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~-~i~~lp~~~~~l~~L~~L~l~~~-~l~~lp~~i~~l~~L~~L~ 209 (478)
.+++++.|++++|.++.+|. + ..+|+.|.+++| .++.+|..+. .+|+.|++++| .+..+|. .|+.|+
T Consensus 50 ~~~~l~~L~Is~c~L~sLP~-L--P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~------sLe~L~ 118 (426)
T PRK15386 50 EARASGRLYIKDCDIESLPV-L--PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPE------SVRSLE 118 (426)
T ss_pred HhcCCCEEEeCCCCCcccCC-C--CCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccccccc------ccceEE
Confidence 45778889999988888773 2 236888888875 4567776553 57888999888 7777775 356666
Q ss_pred ee
Q 047959 210 FG 211 (478)
Q Consensus 210 l~ 211 (478)
++
T Consensus 119 L~ 120 (426)
T PRK15386 119 IK 120 (426)
T ss_pred eC
Confidence 64
No 56
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.79 E-value=4.4e-07 Score=90.83 Aligned_cols=174 Identities=20% Similarity=0.195 Sum_probs=80.6
Q ss_pred CCCCeEeEEEecCCCCCcCCccCCCCC-CCceEeecCCCCCccchh----hh------CCCCCcEEeCCCCcCcccchhh
Q 047959 131 KKFKHLRVLNLGSAVLDQYPPGLENLF-YLKYLKLNIPSLKCLPSL----LC------TLLNLQTLEMPSSYIDHSPEDI 199 (478)
Q Consensus 131 ~~~~~L~~L~L~~~~l~~lp~~~~~l~-~L~~L~l~~~~i~~lp~~----~~------~l~~L~~L~l~~~~l~~lp~~i 199 (478)
..++.||+|.|.+|.+...-. +..+. +|+.|.-++. +..+-.. .+ .-..|.+.+.+.|.+..+-..+
T Consensus 106 fpF~sLr~LElrg~~L~~~~G-L~~lr~qLe~LIC~~S-l~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~~mD~SL 183 (1096)
T KOG1859|consen 106 FPFRSLRVLELRGCDLSTAKG-LQELRHQLEKLICHNS-LDALRHVFASCGGDISNSPVWNKLATASFSYNRLVLMDESL 183 (1096)
T ss_pred ccccceeeEEecCcchhhhhh-hHHHHHhhhhhhhhcc-HHHHHHHHHHhccccccchhhhhHhhhhcchhhHHhHHHHH
Confidence 578889999999998763211 11111 2222222110 0000000 00 0013444444444444444444
Q ss_pred hccccCcEEEeeCCCCCCCCCCCCCCCCCCcEeCcccCC-CCCccc-cCCCCCCcEEEEEecCCcchhhHHHhccCCCCC
Q 047959 200 WMMQKLMHLNFGSITLPAPPKNNSSPLKNLIFISALHPS-SCTPDI-LGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKL 277 (478)
Q Consensus 200 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~-l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L 277 (478)
.-++.|++|++++|.+... +.+..++.|++|+++.|. ...+.. -..+. |+.|.+++| ... ....+.++++|
T Consensus 184 qll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN---~l~-tL~gie~LksL 256 (1096)
T KOG1859|consen 184 QLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNN---ALT-TLRGIENLKSL 256 (1096)
T ss_pred HHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhhh-heeeeeccc---HHH-hhhhHHhhhhh
Confidence 4445555555544433211 133444444444444443 111111 11122 666667665 111 22345567777
Q ss_pred CEEEEEecCcccccCccccccccCCCCceEEEEEeecCC
Q 047959 278 ECLKLVNEGKMRQLSRMILSEYKFPPSLTQLSLSNTELV 316 (478)
Q Consensus 278 ~~L~l~~~~~l~~~p~~~~~~~~~~~~L~~L~l~~~~~~ 316 (478)
+.|+++. |-+..... +..+.. +..|+.|.|.+|++-
T Consensus 257 ~~LDlsy-Nll~~hse-L~pLws-Ls~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 257 YGLDLSY-NLLSEHSE-LEPLWS-LSSLIVLWLEGNPLC 292 (1096)
T ss_pred hccchhH-hhhhcchh-hhHHHH-HHHHHHHhhcCCccc
Confidence 7777776 55543322 002333 667888888888763
No 57
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.79 E-value=6.1e-05 Score=72.69 Aligned_cols=32 Identities=25% Similarity=0.191 Sum_probs=16.8
Q ss_pred cccceeEEecCCCCCceeeCCCcccccceeEEecC
Q 047959 353 PQLKILHLKSMLWLEEWTMGAGAMPKLESLILNPC 387 (478)
Q Consensus 353 ~~L~~L~L~~~~~l~~l~~~~~~~~~L~~L~l~~c 387 (478)
++|++|.+.+|..+. +|.. -.++|+.|.++.+
T Consensus 156 sSLk~L~Is~c~~i~-LP~~--LP~SLk~L~ls~n 187 (426)
T PRK15386 156 PSLKTLSLTGCSNII-LPEK--LPESLQSITLHIE 187 (426)
T ss_pred CcccEEEecCCCccc-Cccc--ccccCcEEEeccc
Confidence 466777776665332 2211 1246666666654
No 58
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.73 E-value=1.7e-05 Score=82.89 Aligned_cols=100 Identities=22% Similarity=0.177 Sum_probs=49.5
Q ss_pred CCceEeecCCCCC--ccchhhh-CCCCCcEEeCCCCcC--cccchhhhccccCcEEEeeCCCCCCCCCCCCCCCCCCcEe
Q 047959 158 YLKYLKLNIPSLK--CLPSLLC-TLLNLQTLEMPSSYI--DHSPEDIWMMQKLMHLNFGSITLPAPPKNNSSPLKNLIFI 232 (478)
Q Consensus 158 ~L~~L~l~~~~i~--~lp~~~~-~l~~L~~L~l~~~~l--~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 232 (478)
+|++|+++|...- .-|..++ .||+|+.|.+++-.+ .++..-..++++|..||+|+.....- .+++++++||.|
T Consensus 123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L 200 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVL 200 (699)
T ss_pred hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHH
Confidence 5666666653321 2222332 356666666665522 22333344566666666644433211 455666666666
Q ss_pred CcccCC---CCCccccCCCCCCcEEEEEec
Q 047959 233 SALHPS---SCTPDILGRLPNVQTLRISGD 259 (478)
Q Consensus 233 ~l~~~~---~~~~~~l~~l~~L~~L~l~~~ 259 (478)
.+.+-. ......+-+|++|+.||+|..
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~ 230 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRD 230 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeecccc
Confidence 655544 223334455555555555554
No 59
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.63 E-value=8.8e-05 Score=63.39 Aligned_cols=60 Identities=27% Similarity=0.261 Sum_probs=27.7
Q ss_pred eEeEEEecCCCCCcCCccCCCCCCCceEeecCCCCCccchhhhC-CCCCcEEeCCCCcCccc
Q 047959 135 HLRVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLPSLLCT-LLNLQTLEMPSSYIDHS 195 (478)
Q Consensus 135 ~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~-l~~L~~L~l~~~~l~~l 195 (478)
....+||++|.+..++. +..++.|..|.+++|+|+.+-+.+.. +++|++|.+.+|++.++
T Consensus 43 ~~d~iDLtdNdl~~l~~-lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l 103 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLDN-LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQEL 103 (233)
T ss_pred ccceecccccchhhccc-CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhh
Confidence 34445555555443333 44445555555555555544433332 33455555555544333
No 60
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.56 E-value=6.9e-05 Score=64.04 Aligned_cols=121 Identities=20% Similarity=0.197 Sum_probs=70.4
Q ss_pred eEEEecCCCCCcCCccCC-CCCCCceEeecCCCCCccchhhhCCCCCcEEeCCCCcCcccchhhhc-cccCcEEEeeCCC
Q 047959 137 RVLNLGSAVLDQYPPGLE-NLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSPEDIWM-MQKLMHLNFGSIT 214 (478)
Q Consensus 137 ~~L~L~~~~l~~lp~~~~-~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~-l~~L~~L~l~~~~ 214 (478)
+.++|++..+..+-. ++ -..+...++|+.|.+..++ .+..++.|.+|.+.+|.|..+.+.+.. +++|+.|.+++|.
T Consensus 22 ~e~~LR~lkip~ien-lg~~~d~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs 99 (233)
T KOG1644|consen 22 RELDLRGLKIPVIEN-LGATLDQFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNS 99 (233)
T ss_pred cccccccccccchhh-ccccccccceecccccchhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcc
Confidence 566777766553332 22 2336677888888777554 455778888888888888887666654 4678888886664
Q ss_pred CCC-CCCCCCCCCCCCcEeCcccCC-----CCCccccCCCCCCcEEEEEec
Q 047959 215 LPA-PPKNNSSPLKNLIFISALHPS-----SCTPDILGRLPNVQTLRISGD 259 (478)
Q Consensus 215 ~~~-~~~~~~~~l~~L~~L~l~~~~-----~~~~~~l~~l~~L~~L~l~~~ 259 (478)
+.. .--..+..+++|++|.+.++. ..-...+..+++|+.||+...
T Consensus 100 i~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 100 IQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred hhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 432 111223445556665555554 122223445555555555544
No 61
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.43 E-value=8.2e-06 Score=83.17 Aligned_cols=110 Identities=17% Similarity=0.083 Sum_probs=49.9
Q ss_pred CCCCcEEeCCCC-cCcc--cchhhhccccCcEEEeeCCCCC-CCC----CCCCCCCCCCcEeCcccCC---CCCcccc-C
Q 047959 179 LLNLQTLEMPSS-YIDH--SPEDIWMMQKLMHLNFGSITLP-APP----KNNSSPLKNLIFISALHPS---SCTPDIL-G 246 (478)
Q Consensus 179 l~~L~~L~l~~~-~l~~--lp~~i~~l~~L~~L~l~~~~~~-~~~----~~~~~~l~~L~~L~l~~~~---~~~~~~l-~ 246 (478)
+++|+.|.+.+| .+.. +-.....+++|+.|+++++... ... ......+.+|+.|++..+. ......+ .
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 455555555555 4433 2233344555555555331111 000 1112233455555555544 1112222 2
Q ss_pred CCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCcc
Q 047959 247 RLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKM 288 (478)
Q Consensus 247 ~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l 288 (478)
.+++|+.|.+.+|.......+......+++|++|++++|..+
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 256666666555532244455555556666666666665544
No 62
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.40 E-value=4.6e-05 Score=60.94 Aligned_cols=75 Identities=19% Similarity=0.245 Sum_probs=42.4
Q ss_pred EeEEEecCCCCCcCCccCCC-CCCCceEeecCCCCCccchhhhCCCCCcEEeCCCCcCcccchhhhccccCcEEEe
Q 047959 136 LRVLNLGSAVLDQYPPGLEN-LFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSPEDIWMMQKLMHLNF 210 (478)
Q Consensus 136 L~~L~L~~~~l~~lp~~~~~-l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l 210 (478)
|...+|++|.+..+|+.+.. ++.++.|++++|.+.++|..+..++.|+.|+++.|.+...|..+..|.+|-.|+.
T Consensus 55 l~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds 130 (177)
T KOG4579|consen 55 LTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDS 130 (177)
T ss_pred EEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcC
Confidence 55555566555555555432 3355555666555555555555555566666665555555555555555555555
No 63
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.37 E-value=9.8e-06 Score=82.60 Aligned_cols=234 Identities=25% Similarity=0.195 Sum_probs=123.9
Q ss_pred CCCCceEeecCCC-CCc--cchhhhCCCCCcEEeCCCC--cCcccc----hhhhccccCcEEEeeCCCC-CCCCCCC-CC
Q 047959 156 LFYLKYLKLNIPS-LKC--LPSLLCTLLNLQTLEMPSS--YIDHSP----EDIWMMQKLMHLNFGSITL-PAPPKNN-SS 224 (478)
Q Consensus 156 l~~L~~L~l~~~~-i~~--lp~~~~~l~~L~~L~l~~~--~l~~lp----~~i~~l~~L~~L~l~~~~~-~~~~~~~-~~ 224 (478)
++.|+.|.+.++. +.. +-.....+++|+.|++++| .+...+ .....+.+|+.|+++++.. ....-.. ..
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 5667777666653 333 3345566677777777763 222211 2233557777777755542 1111111 12
Q ss_pred CCCCCcEeCcccCC----CCCccccCCCCCCcEEEEEecCCcchhhHHHhccCCCCCCEEEEEecCcccccCcccccccc
Q 047959 225 PLKNLIFISALHPS----SCTPDILGRLPNVQTLRISGDLSYYHSGVSKSLCQLHKLECLKLVNEGKMRQLSRMILSEYK 300 (478)
Q Consensus 225 ~l~~L~~L~l~~~~----~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~p~~~~~~~~ 300 (478)
.+++|++|.+..|. ..+......+++|++|+++.+.......+.....++++|+.|.+.....
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~------------- 333 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNG------------- 333 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCC-------------
Confidence 36678887755554 2233445678889999999986333444555566777777766544111
Q ss_pred CCCCceEEEEEeecCCC---CCcCcccCCCCCCeEEEeeCcccCceeEEeCCCCCcccceeEEecCCCCCceeeCCCccc
Q 047959 301 FPPSLTQLSLSNTELVE---DPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLKSMLWLEEWTMGAGAMP 377 (478)
Q Consensus 301 ~~~~L~~L~l~~~~~~~---~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~~~ 377 (478)
++.++.+.+.++.... ...-....+++++.+.+..+.......... ..+++.|. ..+........
T Consensus 334 -c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~-l~gc~~l~----------~~l~~~~~~~~ 401 (482)
T KOG1947|consen 334 -CPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELS-LRGCPNLT----------ESLELRLCRSD 401 (482)
T ss_pred -CccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHH-hcCCcccc----------hHHHHHhccCC
Confidence 3445555554443211 112234567777777777666332221111 33444441 12211122233
Q ss_pred ccceeEEecCCCCCCCcc-ccCC-CCCCCEEEEecCcHH
Q 047959 378 KLESLILNPCAYLRKLPE-EQWC-IKSLCKLELHWPQPE 414 (478)
Q Consensus 378 ~L~~L~l~~c~~l~~lp~-~l~~-l~~L~~L~l~~c~~~ 414 (478)
.++.|.+..|...+.--. .... +..++.+++.+|+..
T Consensus 402 ~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~ 440 (482)
T KOG1947|consen 402 SLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVI 440 (482)
T ss_pred ccceEecccCccccccchHHHhhhhhccccCCccCcccc
Confidence 378888888876553211 1111 667777888887633
No 64
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.28 E-value=2.2e-05 Score=62.74 Aligned_cols=73 Identities=25% Similarity=0.408 Sum_probs=66.8
Q ss_pred ccccCCCCeEeEEEecCCCCCcCCccCCCCCCCceEeecCCCCCccchhhhCCCCCcEEeCCCCcCcccchhh
Q 047959 127 ENFCKKFKHLRVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSPEDI 199 (478)
Q Consensus 127 ~~~~~~~~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i 199 (478)
+.|-.+++.++.|++++|.++.+|.++..++.||.|+++.|.+...|..+..|.+|-.|+..++.+..+|..+
T Consensus 70 ~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~dl 142 (177)
T KOG4579|consen 70 KKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPENARAEIDVDL 142 (177)
T ss_pred HHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCCCCccccCcHHH
Confidence 4455788889999999999999999999999999999999999999999999999999999999888888654
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.84 E-value=0.0007 Score=60.44 Aligned_cols=106 Identities=18% Similarity=0.166 Sum_probs=58.1
Q ss_pred CCCCeEeEEEecCCCCCcCCccCCCCCCCceEeecCC--CCC-ccchhhhCCCCCcEEeCCCCcCcccc--hhhhccccC
Q 047959 131 KKFKHLRVLNLGSAVLDQYPPGLENLFYLKYLKLNIP--SLK-CLPSLLCTLLNLQTLEMPSSYIDHSP--EDIWMMQKL 205 (478)
Q Consensus 131 ~~~~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~--~i~-~lp~~~~~l~~L~~L~l~~~~l~~lp--~~i~~l~~L 205 (478)
-.+..|..|++.++.++.+-. +-.+++|++|.++.| .+. .++..+..+++|++|++++|+++.+. ..+..+++|
T Consensus 40 d~~~~le~ls~~n~gltt~~~-~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL 118 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTLTN-FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENL 118 (260)
T ss_pred ccccchhhhhhhccceeeccc-CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcch
Confidence 344455555566655543322 335667777777777 444 55555556677777777777554321 224566677
Q ss_pred cEEEeeCCCCCCCCCC----CCCCCCCCcEeCcccCC
Q 047959 206 MHLNFGSITLPAPPKN----NSSPLKNLIFISALHPS 238 (478)
Q Consensus 206 ~~L~l~~~~~~~~~~~----~~~~l~~L~~L~l~~~~ 238 (478)
..|++ +|+....+-. .+.-+++|++|+-.+..
T Consensus 119 ~~Ldl-~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 119 KSLDL-FNCSVTNLDDYREKVFLLLPSLKYLDGCDVD 154 (260)
T ss_pred hhhhc-ccCCccccccHHHHHHHHhhhhccccccccC
Confidence 77777 3332222211 13345566666655554
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.58 E-value=0.00061 Score=60.81 Aligned_cols=63 Identities=17% Similarity=0.136 Sum_probs=34.5
Q ss_pred CCCCCCCceEeecCCCCCccchhhhCCCCCcEEeCCCC--cC-cccchhhhccccCcEEEeeCCCCC
Q 047959 153 LENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSS--YI-DHSPEDIWMMQKLMHLNFGSITLP 216 (478)
Q Consensus 153 ~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~--~l-~~lp~~i~~l~~L~~L~l~~~~~~ 216 (478)
...+..|+.|++.+..++++- .+-.|++|++|.++.| .+ ..++.-..++++|++|+++.|.+.
T Consensus 39 ~d~~~~le~ls~~n~gltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 39 TDEFVELELLSVINVGLTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred cccccchhhhhhhccceeecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence 334455666666655544321 2235567777777776 32 334444455577777777666543
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.44 E-value=0.00012 Score=65.56 Aligned_cols=101 Identities=20% Similarity=0.177 Sum_probs=62.5
Q ss_pred CeEeEEEecCCCCCcCCccCCCCCCCceEeecCCCCCccchhhhCCCCCcEEeCCCCcCcccc--hhhhccccCcEEEee
Q 047959 134 KHLRVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSP--EDIWMMQKLMHLNFG 211 (478)
Q Consensus 134 ~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp--~~i~~l~~L~~L~l~ 211 (478)
.+.+.|+..||.++.+.- +.+|+.|++|.|+-|.|+.+. .+..|.+|+.|+|+.|.|.++- ..+.++++|+.|-+.
T Consensus 19 ~~vkKLNcwg~~L~DIsi-c~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ 96 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDISI-CEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLD 96 (388)
T ss_pred HHhhhhcccCCCccHHHH-HHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhc
Confidence 345667777777664332 346777778888777777664 5667777888888877776664 345577777777776
Q ss_pred CCCCCCCCCCC-----CCCCCCCcEeCccc
Q 047959 212 SITLPAPPKNN-----SSPLKNLIFISALH 236 (478)
Q Consensus 212 ~~~~~~~~~~~-----~~~l~~L~~L~l~~ 236 (478)
.|.-.+.-+.. +.-+++|+.|+-..
T Consensus 97 ENPCc~~ag~nYR~~VLR~LPnLkKLDnv~ 126 (388)
T KOG2123|consen 97 ENPCCGEAGQNYRRKVLRVLPNLKKLDNVP 126 (388)
T ss_pred cCCcccccchhHHHHHHHHcccchhccCcc
Confidence 55433332222 23455666665433
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.31 E-value=0.00011 Score=65.89 Aligned_cols=100 Identities=22% Similarity=0.216 Sum_probs=62.0
Q ss_pred CCCceEEEEEeecCCCCCcCcccCCCCCCeEEEeeCcccCceeEEeCCCCCcccceeEEecCCCCCceee--CCCccccc
Q 047959 302 PPSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLERKLACVGCSSFPQLKILHLKSMLWLEEWTM--GAGAMPKL 379 (478)
Q Consensus 302 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~--~~~~~~~L 379 (478)
+.+.++|+..+|.+.+ ......++.|++|.|+-|+++...+ +..|.+|++|+|.. +.+.++.. ...++|+|
T Consensus 18 l~~vkKLNcwg~~L~D--Isic~kMp~lEVLsLSvNkIssL~p----l~rCtrLkElYLRk-N~I~sldEL~YLknlpsL 90 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDD--ISICEKMPLLEVLSLSVNKISSLAP----LQRCTRLKELYLRK-NCIESLDELEYLKNLPSL 90 (388)
T ss_pred HHHhhhhcccCCCccH--HHHHHhcccceeEEeeccccccchh----HHHHHHHHHHHHHh-cccccHHHHHHHhcCchh
Confidence 4456667777776532 3445667777777777777665443 45577777777766 34444322 23567788
Q ss_pred ceeEEecCCCCCCCcc-----ccCCCCCCCEEEE
Q 047959 380 ESLILNPCAYLRKLPE-----EQWCIKSLCKLEL 408 (478)
Q Consensus 380 ~~L~l~~c~~l~~lp~-----~l~~l~~L~~L~l 408 (478)
+.|.|..||....-+. .+.-+|+|+.|+=
T Consensus 91 r~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDn 124 (388)
T KOG2123|consen 91 RTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLDN 124 (388)
T ss_pred hhHhhccCCcccccchhHHHHHHHHcccchhccC
Confidence 8888877776654433 3445777777753
No 69
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.86 E-value=0.018 Score=46.80 Aligned_cols=103 Identities=14% Similarity=0.160 Sum_probs=47.9
Q ss_pred cccCCCCeEeEEEecCCCCCcCCcc-CCCCCCCceEeecCCCCCccch-hhhCCCCCcEEeCCCCcCcccchh-hhcccc
Q 047959 128 NFCKKFKHLRVLNLGSAVLDQYPPG-LENLFYLKYLKLNIPSLKCLPS-LLCTLLNLQTLEMPSSYIDHSPED-IWMMQK 204 (478)
Q Consensus 128 ~~~~~~~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~ 204 (478)
..|..+..|+.+.+.. .+..++.. +.++.+|+.+.+..+ +..++. .+..+.+|+.+.+.. .+..++.. +..+++
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN 82 (129)
T ss_dssp TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccc
Confidence 4566677777777764 45555544 667777888877664 655553 355666777777755 45455433 344777
Q ss_pred CcEEEeeCCCCCCCCCCCCCCCCCCcEeCcc
Q 047959 205 LMHLNFGSITLPAPPKNNSSPLKNLIFISAL 235 (478)
Q Consensus 205 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 235 (478)
|+.+.+..+ ....-...+.++ +|+.+.+.
T Consensus 83 l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 83 LKNIDIPSN-ITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp ECEEEETTT--BEEHTTTTTT--T--EEE-T
T ss_pred ccccccCcc-ccEEchhhhcCC-CceEEEEC
Confidence 777777322 221122234444 55555543
No 70
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.80 E-value=0.0036 Score=33.34 Aligned_cols=16 Identities=44% Similarity=0.723 Sum_probs=6.4
Q ss_pred CceEeecCCCCCccch
Q 047959 159 LKYLKLNIPSLKCLPS 174 (478)
Q Consensus 159 L~~L~l~~~~i~~lp~ 174 (478)
|++|++++|.++.+|+
T Consensus 2 L~~Ldls~n~l~~ip~ 17 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPS 17 (22)
T ss_dssp ESEEEETSSEESEEGT
T ss_pred ccEEECCCCcCEeCCh
Confidence 3344444444434333
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.47 E-value=0.0044 Score=33.00 Aligned_cols=21 Identities=19% Similarity=0.351 Sum_probs=15.9
Q ss_pred CCcEEeCCCCcCcccchhhhc
Q 047959 181 NLQTLEMPSSYIDHSPEDIWM 201 (478)
Q Consensus 181 ~L~~L~l~~~~l~~lp~~i~~ 201 (478)
+|++||+++|++..+|+++++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 478888888887788876554
No 72
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.42 E-value=0.0023 Score=55.01 Aligned_cols=64 Identities=22% Similarity=0.315 Sum_probs=42.6
Q ss_pred CCCCcccceeEEecCCCCCcee--eCCCcccccceeEEecCCCCCCCc-cccCCCCCCCEEEEecCc
Q 047959 349 CSSFPQLKILHLKSMLWLEEWT--MGAGAMPKLESLILNPCAYLRKLP-EEQWCIKSLCKLELHWPQ 412 (478)
Q Consensus 349 ~~~~~~L~~L~L~~~~~l~~l~--~~~~~~~~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~c~ 412 (478)
+..+++++.|.+.+|..+..+. ...+-.|+|+.|+|++|+.+++-. ..+..+++|+.|.+.+-+
T Consensus 121 L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~ 187 (221)
T KOG3864|consen 121 LRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLP 187 (221)
T ss_pred HhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCch
Confidence 4556667777777777666442 222456788888888888776532 355677888888887765
No 73
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.06 E-value=0.032 Score=27.53 Aligned_cols=15 Identities=33% Similarity=0.381 Sum_probs=5.5
Q ss_pred CCceEeecCCCCCcc
Q 047959 158 YLKYLKLNIPSLKCL 172 (478)
Q Consensus 158 ~L~~L~l~~~~i~~l 172 (478)
+|+.|++++|+++++
T Consensus 2 ~L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSL 16 (17)
T ss_dssp T-SEEEETSS--SSE
T ss_pred ccCEEECCCCCCCCC
Confidence 344444444444443
No 74
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.01 E-value=0.039 Score=27.19 Aligned_cols=16 Identities=31% Similarity=0.621 Sum_probs=6.5
Q ss_pred CCcEEeCCCCcCcccc
Q 047959 181 NLQTLEMPSSYIDHSP 196 (478)
Q Consensus 181 ~L~~L~l~~~~l~~lp 196 (478)
+|++|++++|++.++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4555555555555443
No 75
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.15 E-value=0.0052 Score=52.87 Aligned_cols=88 Identities=17% Similarity=0.237 Sum_probs=64.6
Q ss_pred CCceEEEEEeecCCCCCcCcccCCCCCCeEEEeeCcccC-ceeEEeCCCCCcccceeEEecCCCCCcee-eCCCcccccc
Q 047959 303 PSLTQLSLSNTELVEDPMPTLEELPHLEVLKLKQNSYLE-RKLACVGCSSFPQLKILHLKSMLWLEEWT-MGAGAMPKLE 380 (478)
Q Consensus 303 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~-~~~~~~~~~~~~~L~~L~L~~~~~l~~l~-~~~~~~~~L~ 380 (478)
-.++.++-+++.+....+..+..++.++.|.+.+|..-+ ..+... .+.+++|+.|+|++|+.+++-. .....+++|+
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l-~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr 179 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERL-GGLAPSLQDLDLSGCPRITDGGLACLLKLKNLR 179 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHh-cccccchheeeccCCCeechhHHHHHHHhhhhH
Confidence 356777888888777778888899999999999877543 333332 3467999999999999988432 2346789999
Q ss_pred eeEEecCCCCC
Q 047959 381 SLILNPCAYLR 391 (478)
Q Consensus 381 ~L~l~~c~~l~ 391 (478)
.|.+.+-+...
T Consensus 180 ~L~l~~l~~v~ 190 (221)
T KOG3864|consen 180 RLHLYDLPYVA 190 (221)
T ss_pred HHHhcCchhhh
Confidence 99998755443
No 76
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=92.73 E-value=0.26 Score=39.83 Aligned_cols=82 Identities=20% Similarity=0.262 Sum_probs=49.9
Q ss_pred CccccCCCCeEeEEEecCCCCCcCCcc-CCCCCCCceEeecCCCCCccch-hhhCCCCCcEEeCCCCcCcccch-hhhcc
Q 047959 126 CENFCKKFKHLRVLNLGSAVLDQYPPG-LENLFYLKYLKLNIPSLKCLPS-LLCTLLNLQTLEMPSSYIDHSPE-DIWMM 202 (478)
Q Consensus 126 ~~~~~~~~~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~l~~lp~-~i~~l 202 (478)
....|..++.|+.+.+.++ +..++.. +.+++.|+.+.+.. .+..++. .+..+.+|+.+++..+ +..++. .+.++
T Consensus 27 ~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~ 103 (129)
T PF13306_consen 27 GENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC 103 (129)
T ss_dssp -TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT-
T ss_pred Chhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccCcc-ccEEchhhhcCC
Confidence 3556788888999999885 7666655 77888899999976 5665554 3556899999999765 666654 34555
Q ss_pred ccCcEEEee
Q 047959 203 QKLMHLNFG 211 (478)
Q Consensus 203 ~~L~~L~l~ 211 (478)
+|+.+.+.
T Consensus 104 -~l~~i~~~ 111 (129)
T PF13306_consen 104 -NLKEINIP 111 (129)
T ss_dssp -T--EEE-T
T ss_pred -CceEEEEC
Confidence 88888883
No 77
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.68 E-value=0.0032 Score=55.28 Aligned_cols=80 Identities=19% Similarity=0.103 Sum_probs=50.7
Q ss_pred CCCeEeEEEecCCCCCcCCccCCCCCCCceEeecCCCCCccchhhhCCCCCcEEeCCCCcCcccchhhhccccCcEEEee
Q 047959 132 KFKHLRVLNLGSAVLDQYPPGLENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSPEDIWMMQKLMHLNFG 211 (478)
Q Consensus 132 ~~~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~ 211 (478)
.++..++||++.+.+..+-..++-+..|..|+++.+.+..+|.+++.+..+..+++..|+....|.+.++.+++++++.-
T Consensus 40 ~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~k 119 (326)
T KOG0473|consen 40 SFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQK 119 (326)
T ss_pred ccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhhc
Confidence 34556667776666665555566666666666666666666666666666666666666666666666666666666653
No 78
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=91.65 E-value=0.2 Score=27.72 Aligned_cols=20 Identities=20% Similarity=0.406 Sum_probs=11.7
Q ss_pred CCCcEEeCCCCcCcccchhh
Q 047959 180 LNLQTLEMPSSYIDHSPEDI 199 (478)
Q Consensus 180 ~~L~~L~l~~~~l~~lp~~i 199 (478)
.+|++|++++|.+..+|.+.
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCEEECCCCcCCcCCHHH
Confidence 45666666666666665543
No 79
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=91.65 E-value=0.2 Score=27.72 Aligned_cols=20 Identities=20% Similarity=0.406 Sum_probs=11.7
Q ss_pred CCCcEEeCCCCcCcccchhh
Q 047959 180 LNLQTLEMPSSYIDHSPEDI 199 (478)
Q Consensus 180 ~~L~~L~l~~~~l~~lp~~i 199 (478)
.+|++|++++|.+..+|.+.
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCEEECCCCcCCcCCHHH
Confidence 45666666666666665543
No 80
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=89.74 E-value=0.01 Score=52.18 Aligned_cols=84 Identities=12% Similarity=0.061 Sum_probs=67.4
Q ss_pred CCCCCCCceEeecCCCCCccchhhhCCCCCcEEeCCCCcCcccchhhhccccCcEEEeeCCCCCCCCCCCCCCCCCCcEe
Q 047959 153 LENLFYLKYLKLNIPSLKCLPSLLCTLLNLQTLEMPSSYIDHSPEDIWMMQKLMHLNFGSITLPAPPKNNSSPLKNLIFI 232 (478)
Q Consensus 153 ~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 232 (478)
+.....-+.|+++.+++..+-..+..+..|..|+++.+.+..+|.+++++..+++++. ++......|..++..+.++.+
T Consensus 38 i~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~-~~n~~~~~p~s~~k~~~~k~~ 116 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAAS-HKNNHSQQPKSQKKEPHPKKN 116 (326)
T ss_pred hhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHh-hccchhhCCccccccCCcchh
Confidence 6677888899999988887777788888899999999999999999999999999988 444445677777777777776
Q ss_pred CcccC
Q 047959 233 SALHP 237 (478)
Q Consensus 233 ~l~~~ 237 (478)
+...+
T Consensus 117 e~k~~ 121 (326)
T KOG0473|consen 117 EQKKT 121 (326)
T ss_pred hhccC
Confidence 65544
No 81
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=89.56 E-value=0.32 Score=26.84 Aligned_cols=21 Identities=33% Similarity=0.308 Sum_probs=15.8
Q ss_pred CCCCceEeecCCCCCccchhh
Q 047959 156 LFYLKYLKLNIPSLKCLPSLL 176 (478)
Q Consensus 156 l~~L~~L~l~~~~i~~lp~~~ 176 (478)
+++|++|++++|.++.+|..+
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 357788888888888887654
No 82
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=89.56 E-value=0.32 Score=26.84 Aligned_cols=21 Identities=33% Similarity=0.308 Sum_probs=15.8
Q ss_pred CCCCceEeecCCCCCccchhh
Q 047959 156 LFYLKYLKLNIPSLKCLPSLL 176 (478)
Q Consensus 156 l~~L~~L~l~~~~i~~lp~~~ 176 (478)
+++|++|++++|.++.+|..+
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 357788888888888887654
No 83
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=87.41 E-value=0.0023 Score=64.15 Aligned_cols=175 Identities=23% Similarity=0.182 Sum_probs=80.6
Q ss_pred EeEEEecCCCCC-----cCCccCCCCCCCceEeecCCCCC-----ccchhhhCC-CCCcEEeCCCCcCc-----ccchhh
Q 047959 136 LRVLNLGSAVLD-----QYPPGLENLFYLKYLKLNIPSLK-----CLPSLLCTL-LNLQTLEMPSSYID-----HSPEDI 199 (478)
Q Consensus 136 L~~L~L~~~~l~-----~lp~~~~~l~~L~~L~l~~~~i~-----~lp~~~~~l-~~L~~L~l~~~~l~-----~lp~~i 199 (478)
+..|.|.+|.+. .+-..+....+|..|++++|.+. .+-..+... ..|++|++..|.+. .+...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 555666666544 22233444556666666666554 111111121 34555666555442 223444
Q ss_pred hccccCcEEEeeCCCCCC----CCCCCC----CCCCCCcEeCcccCC------CCCccccCCCCC-CcEEEEEecC--Cc
Q 047959 200 WMMQKLMHLNFGSITLPA----PPKNNS----SPLKNLIFISALHPS------SCTPDILGRLPN-VQTLRISGDL--SY 262 (478)
Q Consensus 200 ~~l~~L~~L~l~~~~~~~----~~~~~~----~~l~~L~~L~l~~~~------~~~~~~l~~l~~-L~~L~l~~~~--~~ 262 (478)
.....++.++++.|.+.. .++..+ ....++++|++..|. ......+...+. +..|++..|. +.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 455566666664443321 111122 234556666666654 111122344444 4456666553 11
Q ss_pred chhhHHHhccCC-CCCCEEEEEecCccc-----ccCccccccccCCCCceEEEEEeecC
Q 047959 263 YHSGVSKSLCQL-HKLECLKLVNEGKMR-----QLSRMILSEYKFPPSLTQLSLSNTEL 315 (478)
Q Consensus 263 ~~~~l~~~l~~~-~~L~~L~l~~~~~l~-----~~p~~~~~~~~~~~~L~~L~l~~~~~ 315 (478)
....+...+..+ ..++.++++. +.++ .+.. .+.. ++.++.+.+++|.+
T Consensus 249 g~~~L~~~l~~~~~~l~~l~l~~-nsi~~~~~~~L~~---~l~~-~~~l~~l~l~~n~l 302 (478)
T KOG4308|consen 249 GVEKLLPCLSVLSETLRVLDLSR-NSITEKGVRDLAE---VLVS-CRQLEELSLSNNPL 302 (478)
T ss_pred HHHHHHHHhcccchhhhhhhhhc-CCccccchHHHHH---HHhh-hHHHHHhhcccCcc
Confidence 233344444444 5556666665 3332 1222 2333 55666666666654
No 84
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=78.11 E-value=0.026 Score=56.83 Aligned_cols=284 Identities=19% Similarity=0.093 Sum_probs=146.3
Q ss_pred ccCCCCeEeEEEecCCCCC-----cCCccCCCC-CCCceEeecCCCCC-----ccchhhhCCCCCcEEeCCCCcCc----
Q 047959 129 FCKKFKHLRVLNLGSAVLD-----QYPPGLENL-FYLKYLKLNIPSLK-----CLPSLLCTLLNLQTLEMPSSYID---- 193 (478)
Q Consensus 129 ~~~~~~~L~~L~L~~~~l~-----~lp~~~~~l-~~L~~L~l~~~~i~-----~lp~~~~~l~~L~~L~l~~~~l~---- 193 (478)
.......|..|++++|.+. .+-+.+... ..|++|.+..|.+. .+...+.....++.++++.|.+.
T Consensus 110 ~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~ 189 (478)
T KOG4308|consen 110 ALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGL 189 (478)
T ss_pred HhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhh
Confidence 3356677888888888876 222223232 46777887777665 45555666778888888888442
Q ss_pred -ccchhhh----ccccCcEEEeeCCCCCCC----CCCCCCCCCC-CcEeCcccCC-C-----CCccccCCC-CCCcEEEE
Q 047959 194 -HSPEDIW----MMQKLMHLNFGSITLPAP----PKNNSSPLKN-LIFISALHPS-S-----CTPDILGRL-PNVQTLRI 256 (478)
Q Consensus 194 -~lp~~i~----~l~~L~~L~l~~~~~~~~----~~~~~~~l~~-L~~L~l~~~~-~-----~~~~~l~~l-~~L~~L~l 256 (478)
.++..+. ...++++|+++++..+.. +...+...++ +..|++..+. . .....+..+ ..++.+++
T Consensus 190 ~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l 269 (478)
T KOG4308|consen 190 LVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDL 269 (478)
T ss_pred HHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhh
Confidence 1223333 366788888866654421 1111233344 5557766665 1 123345555 67788888
Q ss_pred EecC--CcchhhHHHhccCCCCCCEEEEEecCcccccCcc--ccccccCCCCceEEEEEeecCCCCCcCc-c----cCCC
Q 047959 257 SGDL--SYYHSGVSKSLCQLHKLECLKLVNEGKMRQLSRM--ILSEYKFPPSLTQLSLSNTELVEDPMPT-L----EELP 327 (478)
Q Consensus 257 ~~~~--~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~p~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~-l----~~l~ 327 (478)
+.|. ......+...+..+++++.+.++. +.+...-.. +..... ...+.++.+.++..-...... + ..-.
T Consensus 270 ~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~-n~l~~~~~~~~~~~l~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 347 (478)
T KOG4308|consen 270 SRNSITEKGVRDLAEVLVSCRQLEELSLSN-NPLTDYGVELLLEALER-KTPLLHLVLGGTGKGTRGGTSVLAEADAQRQ 347 (478)
T ss_pred hcCCccccchHHHHHHHhhhHHHHHhhccc-CccccHHHHHHHHHhhh-cccchhhhccccCccchhHHHHHHHHHHHhh
Confidence 8886 445566777888888999999886 544311000 001222 344555555544321111100 0 0001
Q ss_pred CCCeEEEeeCcccCcee---EEeCCCCCcccceeEEecCCCCC----ceeeCCCcccccceeEEecCCCCCCCcc-----
Q 047959 328 HLEVLKLKQNSYLERKL---ACVGCSSFPQLKILHLKSMLWLE----EWTMGAGAMPKLESLILNPCAYLRKLPE----- 395 (478)
Q Consensus 328 ~L~~L~L~~~~~~~~~~---~~~~~~~~~~L~~L~L~~~~~l~----~l~~~~~~~~~L~~L~l~~c~~l~~lp~----- 395 (478)
.+.....+++...+... ...-...-+.+..+++..+.... .++....+.+.++.++++.|.....-+.
T Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~l~~~~l~~n~~~~~~~~~l~~~ 427 (478)
T KOG4308|consen 348 LLSELGISGNRVGEEGLALLVLAKSNPKSELLRLSLNSQVIEGRGALRLAAQLASNEKLEILDLSLNSLHDEGAEVLTEQ 427 (478)
T ss_pred hhHHHHhhhccchHHHHHHHhhhhcccCcccchhhhhccccccHHHHHhhhhhhhcchhhhhhhhcCccchhhHHHHHHh
Confidence 11122222222211110 00001111223344444322111 3334445678888888887765443222
Q ss_pred ccCCCCCCCEEEEecCcHHH
Q 047959 396 EQWCIKSLCKLELHWPQPEL 415 (478)
Q Consensus 396 ~l~~l~~L~~L~l~~c~~~~ 415 (478)
.-.+. +++.++++..+...
T Consensus 428 ~~~~~-~~~~~~l~~~~~~~ 446 (478)
T KOG4308|consen 428 LSRNG-SLKALRLSRNPITA 446 (478)
T ss_pred hhhcc-cchhhhhccChhhh
Confidence 12345 88888888877333
No 85
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=75.80 E-value=1.3 Score=24.47 Aligned_cols=14 Identities=36% Similarity=0.714 Sum_probs=6.2
Q ss_pred cccceeEEecCCCC
Q 047959 377 PKLESLILNPCAYL 390 (478)
Q Consensus 377 ~~L~~L~l~~c~~l 390 (478)
|+|+.|++++|+.+
T Consensus 2 ~~L~~L~l~~C~~i 15 (26)
T smart00367 2 PNLRELDLSGCTNI 15 (26)
T ss_pred CCCCEeCCCCCCCc
Confidence 34444444444433
No 86
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=75.34 E-value=1.8 Score=23.96 Aligned_cols=17 Identities=35% Similarity=0.444 Sum_probs=9.2
Q ss_pred CCceEeecCCCCCccch
Q 047959 158 YLKYLKLNIPSLKCLPS 174 (478)
Q Consensus 158 ~L~~L~l~~~~i~~lp~ 174 (478)
+|++|++++|+++++|+
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 45555555555555553
No 87
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=72.34 E-value=3.3 Score=22.93 Aligned_cols=16 Identities=25% Similarity=0.424 Sum_probs=10.0
Q ss_pred CCCcEEeCCCCcCccc
Q 047959 180 LNLQTLEMPSSYIDHS 195 (478)
Q Consensus 180 ~~L~~L~l~~~~l~~l 195 (478)
.+|+.|++++|+|+.+
T Consensus 2 ~~L~~L~L~~NkI~~I 17 (26)
T smart00365 2 TNLEELDLSQNKIKKI 17 (26)
T ss_pred CccCEEECCCCcccee
Confidence 4666777777665444
No 88
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=63.70 E-value=4.6 Score=21.57 Aligned_cols=14 Identities=36% Similarity=0.565 Sum_probs=8.0
Q ss_pred CCCcEEeCCCCcCc
Q 047959 180 LNLQTLEMPSSYID 193 (478)
Q Consensus 180 ~~L~~L~l~~~~l~ 193 (478)
++|++|++++|.+.
T Consensus 2 ~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 2 PNLETLDLSNNQIT 15 (24)
T ss_dssp TT-SEEE-TSSBEH
T ss_pred CCCCEEEccCCcCC
Confidence 56777777777553
No 89
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=50.23 E-value=11 Score=21.20 Aligned_cols=12 Identities=42% Similarity=0.559 Sum_probs=5.7
Q ss_pred eEeEEEecCCCC
Q 047959 135 HLRVLNLGSAVL 146 (478)
Q Consensus 135 ~L~~L~L~~~~l 146 (478)
.|++|+|++|.+
T Consensus 3 ~L~~LdL~~N~i 14 (28)
T smart00368 3 SLRELDLSNNKL 14 (28)
T ss_pred ccCEEECCCCCC
Confidence 344455554444
No 90
>PF14162 YozD: YozD-like protein
Probab=48.35 E-value=31 Score=22.46 Aligned_cols=27 Identities=26% Similarity=0.473 Sum_probs=18.1
Q ss_pred HcCCCC--CChHHHHHHHHHHHHHcccee
Q 047959 41 AEGFIP--YNSEETAKHYLKELIHRGFIQ 67 (478)
Q Consensus 41 ~~g~~~--~~~~~~~~~~~~~L~~~~ll~ 67 (478)
.-||++ .+.++.|.--|+-|+.+|++.
T Consensus 23 kRGyvP~e~El~eiADItFeYll~K~iId 51 (57)
T PF14162_consen 23 KRGYVPTEEELEEIADITFEYLLEKCIID 51 (57)
T ss_pred HccCCCcHHHHHHHHHHHHHHHHHHHhhh
Confidence 347776 666666777777777777664
No 91
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=35.59 E-value=11 Score=38.03 Aligned_cols=64 Identities=27% Similarity=0.242 Sum_probs=33.9
Q ss_pred CCCceEEEEEeecCCC-CCcCcc-cCCCCCCeEEEeeC--cccCceeEEeCCCCCcccceeEEecCCCCC
Q 047959 302 PPSLTQLSLSNTELVE-DPMPTL-EELPHLEVLKLKQN--SYLERKLACVGCSSFPQLKILHLKSMLWLE 367 (478)
Q Consensus 302 ~~~L~~L~l~~~~~~~-~~~~~l-~~l~~L~~L~L~~~--~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~ 367 (478)
.+.+..+++++|++.. +....+ ...|+|+.|+|++| .+....... -.....|++|.+.+++-.+
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~--K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELD--KLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhh--hhcCCCHHHeeecCCcccc
Confidence 6778888888887643 112222 34577777777766 222211111 1223446666666655433
No 92
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=31.70 E-value=33 Score=34.90 Aligned_cols=36 Identities=14% Similarity=0.186 Sum_probs=20.2
Q ss_pred CCCCCcEEeCCCCcCccc---chhhhccccCcEEEeeCC
Q 047959 178 TLLNLQTLEMPSSYIDHS---PEDIWMMQKLMHLNFGSI 213 (478)
Q Consensus 178 ~l~~L~~L~l~~~~l~~l---p~~i~~l~~L~~L~l~~~ 213 (478)
+.+.+..+.+++|++..+ ..-...-++|+.|+|++|
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 445566666666654433 222234567777777665
No 93
>PRK04841 transcriptional regulator MalT; Provisional
Probab=30.89 E-value=1.3e+02 Score=33.56 Aligned_cols=73 Identities=14% Similarity=0.148 Sum_probs=49.7
Q ss_pred cCCChhhHHHHHhHhcccCCCceechhHHHHHHHHcCCCCCChHHHHHHHHHHHHHccceeeeecCCCCcEeEEEeCHHH
Q 047959 7 VMELPFHLKVCCIYLCAFPPSIEISTEQLYQLWVAEGFIPYNSEETAKHYLKELIHRGFIQVSKRRSGGTIKACYVPSIA 86 (478)
Q Consensus 7 Y~~L~~~~k~cFl~~a~Fp~~~~i~~~~Li~~w~~~g~~~~~~~~~~~~~~~~L~~~~ll~~~~~~~~g~~~~~~mhdli 86 (478)
++.||++.++.++..|+++ .++ .++...-. | .+.+...+++|...+++..... .++ ..|+.|+++
T Consensus 260 ~~~l~~~~~~~l~~~a~~~---~~~-~~l~~~l~--~------~~~~~~~L~~l~~~~l~~~~~~-~~~--~~yr~H~L~ 324 (903)
T PRK04841 260 LDNVDLETRHFLLRCSVLR---SMN-DALIVRVT--G------EENGQMRLEELERQGLFIQRMD-DSG--EWFRYHPLF 324 (903)
T ss_pred HhcCCHHHHHHHHHhcccc---cCC-HHHHHHHc--C------CCcHHHHHHHHHHCCCeeEeec-CCC--CEEehhHHH
Confidence 6789999999999999986 344 33433221 1 1125678999999999754321 112 347789999
Q ss_pred HHHHHHHh
Q 047959 87 YTSLALMA 94 (478)
Q Consensus 87 ~dl~~~~~ 94 (478)
+++.....
T Consensus 325 r~~l~~~l 332 (903)
T PRK04841 325 ASFLRHRC 332 (903)
T ss_pred HHHHHHHH
Confidence 99988765
No 94
>cd04441 DEP_2_DEP6 DEP (Dishevelled, Egl-10, and Pleckstrin) domain 2 found in DEP6-like proteins. DEP6 proteins contain two DEP and a PDZ domain. Their function is unknown.
Probab=25.96 E-value=1.8e+02 Score=21.57 Aligned_cols=41 Identities=20% Similarity=0.312 Sum_probs=32.3
Q ss_pred echhHHHHHHHHcCCCCCChHHHHHHHHHHHHHccceeeeecC
Q 047959 30 ISTEQLYQLWVAEGFIPYNSEETAKHYLKELIHRGFIQVSKRR 72 (478)
Q Consensus 30 i~~~~Li~~w~~~g~~~~~~~~~~~~~~~~L~~~~ll~~~~~~ 72 (478)
|.-.++|++.+..|.+ ...+.|..+.+.|.+.++|+.+..+
T Consensus 33 F~GsElVdWL~~~~~~--~sR~eAv~lgq~Ll~~gii~HV~~~ 73 (85)
T cd04441 33 FVGSEFIDWLLQEGEA--ESRREAVQLCRRLLEHGIIQHVSNK 73 (85)
T ss_pred eEchHHHHHHHHcCCC--CCHHHHHHHHHHHHHCCCEEecCCC
Confidence 4457899988888865 4566688899999999999987643
No 95
>PF12802 MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP4_B 3KP2_A 3KP5_A 3KP3_B 3KP7_A 3NQO_B 3K0L_B ....
Probab=23.42 E-value=2.3e+02 Score=18.79 Aligned_cols=60 Identities=17% Similarity=0.191 Sum_probs=41.5
Q ss_pred CChhhHHHHHhHhcccCCCceechhHHHHHHHHcCCCCCChHHHHHHHHHHHHHccceeeeecCCCCc
Q 047959 9 ELPFHLKVCCIYLCAFPPSIEISTEQLYQLWVAEGFIPYNSEETAKHYLKELIHRGFIQVSKRRSGGT 76 (478)
Q Consensus 9 ~L~~~~k~cFl~~a~Fp~~~~i~~~~Li~~w~~~g~~~~~~~~~~~~~~~~L~~~~ll~~~~~~~~g~ 76 (478)
+|....-.++.++.-+|++ .+...+|.+.+. -........++.|..+++++......|++
T Consensus 2 glt~~q~~vL~~l~~~~~~-~~t~~~la~~l~-------~~~~~vs~~v~~L~~~Glv~r~~~~~D~R 61 (62)
T PF12802_consen 2 GLTPSQFRVLMALARHPGE-ELTQSELAERLG-------ISKSTVSRIVKRLEKKGLVERERDPGDRR 61 (62)
T ss_dssp TSTHHHHHHHHHHHHSTTS-GEEHHHHHHHHT-------S-HHHHHHHHHHHHHTTSEEEEE-SSSTT
T ss_pred ccCHHHHHHHHHHHHCCCC-CcCHHHHHHHHC-------cCHHHHHHHHHHHHHCCCEEEeCCCCCCC
Confidence 4555566778888888876 567778777652 22344667899999999998877655554
No 96
>cd04443 DEP_GPR155 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in GPR155-like proteins. GRP155-like proteins, also known as PGR22, contain an N-terminal permease domain, a central transmembrane region and a C-terminal DEP domain. They are orphan receptors of the class B G protein-coupled receptors. Their function is unknown.
Probab=23.12 E-value=2.4e+02 Score=20.78 Aligned_cols=40 Identities=18% Similarity=0.255 Sum_probs=31.2
Q ss_pred echhHHHHHHHHcCCCCCChHHHHHHHHHHHHHccceeeeec
Q 047959 30 ISTEQLYQLWVAEGFIPYNSEETAKHYLKELIHRGFIQVSKR 71 (478)
Q Consensus 30 i~~~~Li~~w~~~g~~~~~~~~~~~~~~~~L~~~~ll~~~~~ 71 (478)
|.-.++|++.+..|.+ ...+.|..+-+.|.+.++|..+..
T Consensus 31 F~GselVdWL~~~~~~--~sR~eAv~lg~~Ll~~G~i~HV~~ 70 (83)
T cd04443 31 FCGCDLVSWLIEVGLA--QDRGEAVLYGRRLLQGGVLQHITN 70 (83)
T ss_pred ccHHHHHHHHHHcCCC--CCHHHHHHHHHHHHHCCCEEecCC
Confidence 4567899977777777 344568889999999999988764
No 97
>PF00610 DEP: Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP); InterPro: IPR000591 This entry represents the DEP (Dishevelled, Egl-10 and Pleckstrin) domain, a globular domain of about 80 residues that is found in over 50 proteins involved in G-protein signalling pathways. It was named after the three proteins it was initially found in: Dishevelled (Dsh and Dvl), which play a key role in the transduction of the Wg/Wnt signal from the cell surface to the nucleus; it is a segment polarity protein required to establish coherent arrays of polarized cells and segments in embryos, and plays a role in wingless signalling. Egl-10, which regulates G-protein signalling in the central nervous system. Pleckstrin, the major substrate of protein kinase C in platelets; Pleckstrin contains two PH domains flanking the DEP domain. Mammalian regulators of G-protein signalling also contain these domains, and regulate signal transduction by increasing the GTPase activity of G-protein alpha subunits, thereby driving them into their inactive GDP-bound form. It has been proposed that the DEP domain could play a selective role in targeting DEP domain-containing proteins to specific subcellular membranous sites, perhaps even to specific G protein-coupled signaling pathways [, ]. Nuclear magnetic resonance spectroscopy has revealed that the DEP domain comprises a three-helix bundle, a beta-hairpin 'arm' composed of two beta-strands and two short beta-strands in the C-terminal region [].; GO: 0035556 intracellular signal transduction; PDB: 1UHW_A 1V3F_A 2YSR_A 2CSO_A 1W4M_A 2PBI_C 1O7F_A 2BYV_E 1FSH_A 3ML6_D ....
Probab=23.12 E-value=2.5e+02 Score=19.65 Aligned_cols=41 Identities=24% Similarity=0.456 Sum_probs=32.1
Q ss_pred echhHHHHHHHH--cCCCCCChHHHHHHHHHHHHHccceeeeecC
Q 047959 30 ISTEQLYQLWVA--EGFIPYNSEETAKHYLKELIHRGFIQVSKRR 72 (478)
Q Consensus 30 i~~~~Li~~w~~--~g~~~~~~~~~~~~~~~~L~~~~ll~~~~~~ 72 (478)
|.-.++|++.+. +|++ ...+.|..+-+.|+++++|+.+...
T Consensus 18 F~G~e~v~WL~~~~~~~~--~~r~eA~~l~q~Ll~~g~i~~v~~~ 60 (74)
T PF00610_consen 18 FTGSEAVDWLMDNFEGFV--RDREEAVQLGQELLDHGFIEHVSDK 60 (74)
T ss_dssp EEHHHHHHHHHHTSCTST--SSHHHHHHHHHHHHHCTSEEESSSS
T ss_pred eEhHHHHHHHHHhccccc--cCHHHHHHHHHHHHHCCCEEECCCC
Confidence 566788887775 6766 5666688899999999999987643
No 98
>PF15385 SARG: Specifically androgen-regulated gene protein
Probab=22.95 E-value=44 Score=33.83 Aligned_cols=15 Identities=27% Similarity=0.383 Sum_probs=14.3
Q ss_pred ccCCChhhHHHHHhH
Q 047959 6 SVMELPFHLKVCCIY 20 (478)
Q Consensus 6 SY~~L~~~~k~cFl~ 20 (478)
|||+|..+.|.|.+|
T Consensus 7 Sl~~LS~EEkecLlF 21 (497)
T PF15385_consen 7 SLDYLSAEEKECLLF 21 (497)
T ss_pred cccccchhhHHHHHH
Confidence 899999999999998
No 99
>COG3432 Predicted transcriptional regulator [Transcription]
Probab=22.66 E-value=3.3e+02 Score=20.73 Aligned_cols=41 Identities=20% Similarity=0.269 Sum_probs=29.0
Q ss_pred CChHHHHHHHHHHHHHccceeeeecCCCCcEeEEEeCHHHHHHH
Q 047959 47 YNSEETAKHYLKELIHRGFIQVSKRRSGGTIKACYVPSIAYTSL 90 (478)
Q Consensus 47 ~~~~~~~~~~~~~L~~~~ll~~~~~~~~g~~~~~~mhdli~dl~ 90 (478)
.-..+.|..|++.|++++++.... +|+-+.|..=+-=.++.
T Consensus 42 Nlny~~~~~yi~~L~~~Gli~~~~---~~~~~~y~lT~KG~~fl 82 (95)
T COG3432 42 NLNYKRAQKYIEMLVEKGLIIKQD---NGRRKVYELTEKGKRFL 82 (95)
T ss_pred CcCHHHHHHHHHHHHhCCCEEecc---CCccceEEEChhHHHHH
Confidence 456778999999999999776654 34444677666555553
No 100
>cd04440 DEP_2_P-Rex DEP (Dishevelled, Egl-10, and Pleckstrin) domain 2 found in P-Rex-like proteins. The P-Rex family is the guanine-nucleotide exchange factor (GEF) for the small GTPase Rac that contains an N-terminal RhoGEF domain, two DEP and PDZ domains. Rac-GEF activity is stimulated by phosphatidylinositol (3,4,5)-trisphosphate (PtdIns(3,4,5)P3), a lipid second messenger, and the G beta-gamma subunits of heterotrimeric G proteins. The DEP domains are not involved in mediating these stimuli, but may be of importance for basal and stimulated levels Rac-GEF activity.
Probab=22.25 E-value=2.3e+02 Score=21.45 Aligned_cols=40 Identities=20% Similarity=0.243 Sum_probs=32.6
Q ss_pred chhHHHHHHHHcCCCCCChHHHHHHHHHHHHHccceeeeecC
Q 047959 31 STEQLYQLWVAEGFIPYNSEETAKHYLKELIHRGFIQVSKRR 72 (478)
Q Consensus 31 ~~~~Li~~w~~~g~~~~~~~~~~~~~~~~L~~~~ll~~~~~~ 72 (478)
--.+++.+.+..|-+ ...+.|..+-+.|.+.++++-+..+
T Consensus 39 vGsElVdWLi~~g~~--~tR~eAv~~gq~Ll~~gii~HV~~~ 78 (93)
T cd04440 39 PASKLVDWLLAQGDC--RTREEAVILGVGLCNNGFMHHVLEK 78 (93)
T ss_pred chhHHHHHHHHcCCC--CCHHHHHHHHHHHHhCCCEEecCCC
Confidence 346899998999888 4666688999999999999887644
No 101
>PF13463 HTH_27: Winged helix DNA-binding domain; PDB: 3GFL_A 2YR2_B 3GFM_A 3GFJ_A 3GF2_A 3GEZ_A 2GXG_A 3GFI_A 2EB7_A.
Probab=20.98 E-value=2e+02 Score=19.53 Aligned_cols=48 Identities=15% Similarity=0.174 Sum_probs=30.8
Q ss_pred ceechhHHHHHHHHcCCCCCChHHHHHHHHHHHHHccceeeeecCCCCcEeEEEe
Q 047959 28 IEISTEQLYQLWVAEGFIPYNSEETAKHYLKELIHRGFIQVSKRRSGGTIKACYV 82 (478)
Q Consensus 28 ~~i~~~~Li~~w~~~g~~~~~~~~~~~~~~~~L~~~~ll~~~~~~~~g~~~~~~m 82 (478)
-..+..+|.+.+. -........++.|+.+++++......|++...+..
T Consensus 17 ~~~t~~~l~~~~~-------~~~~~vs~~i~~L~~~glv~~~~~~~d~R~~~~~L 64 (68)
T PF13463_consen 17 GPMTQSDLAERLG-------ISKSTVSRIIKKLEEKGLVEKERDPHDKRSKRYRL 64 (68)
T ss_dssp S-BEHHHHHHHTT---------HHHHHHHHHHHHHTTSEEEEEESSCTTSEEEEE
T ss_pred CCcCHHHHHHHHC-------cCHHHHHHHHHHHHHCCCEEecCCCCcCCeeEEEe
Confidence 3445555555431 12233557899999999998888777887666653
Done!